BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 007400
         (605 letters)

Database: nr 
           23,463,169 sequences; 8,064,228,071 total letters

Searching..................................................done



>gi|225427963|ref|XP_002277549.1| PREDICTED: pentatricopeptide repeat-containing protein At2g21090
           [Vitis vinifera]
          Length = 612

 Score =  848 bits (2190), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 400/612 (65%), Positives = 496/612 (81%), Gaps = 7/612 (1%)

Query: 1   MPS------NFSPRGIN-RKNLPNNCLIQSFLSLISKGQLSEAISSLDLLAQRGIRLPAE 53
           MPS      NFSP   N RK     CL+++ + L  K +L+EA+SSL+ LA+RG+RL + 
Sbjct: 1   MPSLSSPNLNFSPFRTNPRKPRRRPCLVEAIVKLCKKNKLNEAVSSLENLARRGLRLDSR 60

Query: 54  TLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDK 113
           TLA +LQ CA+S++L+ GKRVHLHLKLT  K P TFLSNHLI+MY KCG +V+ARKVFDK
Sbjct: 61  TLASLLQHCADSRALREGKRVHLHLKLTGLKRPGTFLSNHLINMYAKCGKEVEARKVFDK 120

Query: 114 IPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFY 173
           +  +NL+S+NNMLSGYA LGM+K AR LFD M E+DVVSWNTM+I +A+ G  +E L+FY
Sbjct: 121 MSARNLYSWNNMLSGYAKLGMIKPARKLFDKMPEKDVVSWNTMVIAHAQCGYWDEALRFY 180

Query: 174 KVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKC 233
              R+  I CN FSFAG+LT+CVKL+E+ LTRQVHGQ+LV GFLSNVV+SSS++DAY KC
Sbjct: 181 SEFRQLGIQCNGFSFAGVLTVCVKLKEVGLTRQVHGQILVAGFLSNVVLSSSVLDAYVKC 240

Query: 234 GELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYT 293
           G + DAR+LFDE  ARDVL WTTMVSGYAK GDM+SA++LF EMPEKNPVSWT LI+GY 
Sbjct: 241 GLMGDARKLFDEMSARDVLAWTTMVSGYAKWGDMKSANELFVEMPEKNPVSWTALISGYA 300

Query: 294 RNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTI 353
           RNG+G KALELFT+MM+  +RP+Q TFSSCLCACASI SLKHGKQ+H +L+R NF+ NTI
Sbjct: 301 RNGMGHKALELFTKMMLFHVRPDQFTFSSCLCACASIASLKHGKQIHAYLLRINFQPNTI 360

Query: 354 VMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRS 413
           V+S+LIDMYSKCG L  GR+VFDL  NK + +LWNT+ISAL QHG  E+AI++  DMVRS
Sbjct: 361 VVSALIDMYSKCGSLGIGRKVFDLMGNKLDVVLWNTIISALAQHGCGEEAIQMLDDMVRS 420

Query: 414 SVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQ 473
             KPDKIT  VILNAC+HSGLVQ+GL +FESM+ D GI+P+QEH+ACLI+LL +AGC ++
Sbjct: 421 GAKPDKITFVVILNACSHSGLVQQGLNFFESMSCDYGIVPSQEHYACLIDLLGRAGCFEE 480

Query: 474 LMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSA 533
           +M+QLEKMPY+ D  +WNAL GVCRIHG+I++GRK  ++LI+  PQSS  + LLSSIY+ 
Sbjct: 481 VMDQLEKMPYKPDDRVWNALLGVCRIHGHIELGRKAAERLIELEPQSSTAYVLLSSIYAV 540

Query: 534 LGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQ 593
           LG+   V+KVRQL+NERQ KKE+AISW+EIENKVH+FSVSDS HP+++ +YSVLEQLAGQ
Sbjct: 541 LGRWESVQKVRQLMNERQVKKERAISWLEIENKVHSFSVSDSSHPLKEQIYSVLEQLAGQ 600

Query: 594 MGEDAPSLDADR 605
           M EDA    A R
Sbjct: 601 MEEDASLFIAQR 612


>gi|255574750|ref|XP_002528283.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223532320|gb|EEF34121.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 602

 Score =  803 bits (2074), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 382/596 (64%), Positives = 481/596 (80%), Gaps = 2/596 (0%)

Query: 1   MPSNFSPRGINRKNLPNNCLIQSFLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQ 60
           MP++        K +P  C+++S L L S+GQL +AISSL LL++ GIRLP++TLA++LQ
Sbjct: 1   MPTSSKFHSNRTKRVP--CIVKSLLHLSSQGQLFQAISSLGLLSRNGIRLPSKTLAYLLQ 58

Query: 61  QCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLF 120
           QCA +KSLKLGK VHLHLK+T  K P TFL+NHLI+MY KCG    A KVFD++  +NL+
Sbjct: 59  QCANTKSLKLGKWVHLHLKVTGLKRPNTFLANHLINMYSKCGDYPSAYKVFDEMSTRNLY 118

Query: 121 SYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFS 180
           S+N MLSGYA LG +K AR LFD M E+DVVSWNTM+I YAKSG   + L+FY+ LRR  
Sbjct: 119 SWNGMLSGYAKLGKIKPARKLFDKMPEKDVVSWNTMVIAYAKSGFCNDALRFYRELRRLG 178

Query: 181 ISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDAR 240
           I  NE+SFAG+L ICVK++EL+L++Q HGQVLV GFLSN+VISSS++DAYAKC E+ DAR
Sbjct: 179 IGYNEYSFAGLLNICVKVKELELSKQAHGQVLVAGFLSNLVISSSVLDAYAKCSEMGDAR 238

Query: 241 RLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQK 300
           RLFDE   RDVL WTTMVSGYA+ GD+E+A +LF+ MPEKNPV+WT+LIAGY R+ LG K
Sbjct: 239 RLFDEMIIRDVLAWTTMVSGYAQWGDVEAARELFDLMPEKNPVAWTSLIAGYARHDLGHK 298

Query: 301 ALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLID 360
           ALELFT+MM L IRP+Q TFSSCLCA ASI SL HGKQ+HG+LIRTN R NTIV+SSLID
Sbjct: 299 ALELFTKMMALNIRPDQFTFSSCLCASASIASLNHGKQIHGYLIRTNIRPNTIVVSSLID 358

Query: 361 MYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKI 420
           MYSKCGCL  GR VFDL  +K + +LWNT+IS+L QHG  ++AI++F DMVR  +KPD+I
Sbjct: 359 MYSKCGCLEVGRLVFDLMGDKWDVVLWNTIISSLAQHGRGQEAIQMFDDMVRLGMKPDRI 418

Query: 421 TLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEK 480
           TL V+LNAC+HSGLVQEGL  +ES+T   G+IPNQEH+ACLI+LL +AG  D LMNQLEK
Sbjct: 419 TLIVLLNACSHSGLVQEGLRLYESITSCHGVIPNQEHYACLIDLLGRAGHFDTLMNQLEK 478

Query: 481 MPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLV 540
           MP + +  +WNAL GVCR+HGNI+ GR+V +++I+ +PQSSA + LLSSI++A+G+  LV
Sbjct: 479 MPCKPNDEIWNALLGVCRMHGNIEFGREVAEKIIELDPQSSAAYVLLSSIHAAVGRWELV 538

Query: 541 EKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQMGE 596
           E VRQL+NER  +K++AISWIEIENKVH+F+ SD LHP+++V+Y  L+QLAG M E
Sbjct: 539 ENVRQLMNERHVRKDRAISWIEIENKVHSFTASDRLHPLKEVIYLALKQLAGHMEE 594


>gi|449530628|ref|XP_004172296.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g21090-like [Cucumis sativus]
          Length = 611

 Score =  747 bits (1929), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 351/596 (58%), Positives = 460/596 (77%)

Query: 2   PSNFSPRGINRKNLPNNCLIQSFLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQ 61
           P++F P+   R +    C+ QS L L S+G+L EA+S LD LAQRGIRLP      +L+ 
Sbjct: 12  PASFGPKSKQRPDSTGLCIAQSLLDLSSQGRLPEALSYLDRLAQRGIRLPTGIFVDLLRL 71

Query: 62  CAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFS 121
           CA++K  K GK VHLHLK T  K PTT ++NHLI MYF+CG DV+ARKVFDK+ V+NL+S
Sbjct: 72  CAKAKYFKGGKCVHLHLKHTGFKRPTTIVANHLIGMYFECGRDVEARKVFDKMSVRNLYS 131

Query: 122 YNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSI 181
           +N+ML+GYA LG + +AR LFD M E+DVVSWNT+++ YAK G   E +  Y+  RR  +
Sbjct: 132 WNHMLAGYAKLGDVNNARKLFDRMMEKDVVSWNTIVLAYAKQGCFNEAIGLYRDFRRLDM 191

Query: 182 SCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARR 241
             N FSFAG+L +CVKL+EL+L +QVHGQVLV GFLSN+V+SSSIVDAY+KCGE+  AR 
Sbjct: 192 GFNAFSFAGVLILCVKLKELQLAKQVHGQVLVAGFLSNLVLSSSIVDAYSKCGEMRCART 251

Query: 242 LFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKA 301
           LFDE   +D+  WTT+VSGYAK GDM SAS+LF++MPEKNPVSW+ LI+GY RN LG +A
Sbjct: 252 LFDEMLVKDIHAWTTIVSGYAKWGDMNSASELFHQMPEKNPVSWSALISGYARNSLGHEA 311

Query: 302 LELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDM 361
           L+ FT+MM   I P Q+TFSSCLCACASI +LKHGKQVHG+LIRT FR NTIV+SSLIDM
Sbjct: 312 LDYFTKMMKFGINPEQYTFSSCLCACASIAALKHGKQVHGYLIRTYFRCNTIVVSSLIDM 371

Query: 362 YSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKIT 421
           YSKCG L     VF L  NK++ ++WNTMISAL Q+G+ E+A+++F+DMV S +KPD+IT
Sbjct: 372 YSKCGMLEASCCVFHLMGNKQDVVVWNTMISALAQNGHGEKAMQMFNDMVESGLKPDRIT 431

Query: 422 LAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKM 481
             VIL+AC+HSGLVQEGL +F++MT+D G+ P+QEH+ACLI+LL +AGC  +L+N+LE M
Sbjct: 432 FIVILSACSHSGLVQEGLRFFKAMTYDHGVFPDQEHYACLIDLLGRAGCFVELVNELENM 491

Query: 482 PYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVE 541
             + D  +W+AL GVCRIH NI++GRKV +++I+  PQSSA +  L+S+Y+ LGK   VE
Sbjct: 492 SCKPDDRVWSALLGVCRIHNNIELGRKVAERVIELKPQSSAAYVSLASLYAFLGKWESVE 551

Query: 542 KVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQMGED 597
           KVR+L++E+  +KE+ ISWI++ NK H+F  SD LHP+++ +Y +LEQLA    ED
Sbjct: 552 KVRELMDEKFIRKERGISWIDVGNKTHSFIASDRLHPLKEEIYLLLEQLARHTEED 607


>gi|449438554|ref|XP_004137053.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g21090-like [Cucumis sativus]
          Length = 611

 Score =  747 bits (1929), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 350/596 (58%), Positives = 461/596 (77%)

Query: 2   PSNFSPRGINRKNLPNNCLIQSFLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQ 61
           P++F P+   R +  + C+ QS L L S+G+L EA+S LD LAQRG+RLP      +L+ 
Sbjct: 12  PASFGPKSKQRPDSTSLCIAQSLLDLSSQGRLPEALSYLDRLAQRGVRLPTGIFVDLLRL 71

Query: 62  CAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFS 121
           CA++K  K GK VHLHLK T  K PTT ++NHLI MYF+CG DV+ARKVFDK+ V+NL+S
Sbjct: 72  CAKAKYFKGGKCVHLHLKHTGFKRPTTIVANHLIGMYFECGRDVEARKVFDKMSVRNLYS 131

Query: 122 YNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSI 181
           +N+ML+GYA LG + +AR LFD M E+DVVSWNT+++ YAK G   E +  Y+  RR  +
Sbjct: 132 WNHMLAGYAKLGDVNNARKLFDRMMEKDVVSWNTIVLAYAKQGCFNEAIGLYRDFRRLDM 191

Query: 182 SCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARR 241
             N FSFAG+L +CVKL+EL+L +QVHGQVLV GFLSN+V+SSSIVDAYAKCGE+  AR 
Sbjct: 192 GFNAFSFAGVLILCVKLKELQLAKQVHGQVLVAGFLSNLVLSSSIVDAYAKCGEMRCART 251

Query: 242 LFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKA 301
           LFDE   +D+  WTT+VSGYAK GDM SAS+LF++MPEKNPVSW+ LI+GY RN LG +A
Sbjct: 252 LFDEMLVKDIHAWTTIVSGYAKWGDMNSASELFHQMPEKNPVSWSALISGYARNSLGHEA 311

Query: 302 LELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDM 361
           L+ FT+MM   I P Q+TFSSCLCACASI +LKHGKQVHG+LIRT FR NTIV+SSLIDM
Sbjct: 312 LDYFTKMMKFGINPEQYTFSSCLCACASIAALKHGKQVHGYLIRTYFRCNTIVVSSLIDM 371

Query: 362 YSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKIT 421
           YSKCG L     VF L  NK++ ++WNTMISAL Q+G+ E+A+++F+DMV S +KPD+IT
Sbjct: 372 YSKCGMLEASCCVFHLMGNKQDVVVWNTMISALAQNGHGEKAMQMFNDMVESGLKPDRIT 431

Query: 422 LAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKM 481
             VIL+AC+HSGLVQEGL +F++MT+D G+ P+QEH++CLI+LL +AGC  +L+N+LE M
Sbjct: 432 FIVILSACSHSGLVQEGLRFFKAMTYDHGVFPDQEHYSCLIDLLGRAGCFVELVNELENM 491

Query: 482 PYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVE 541
             + D  +W+AL GVCRIH NI++GRKV +++I+  PQSSA +  L+S+Y+ LGK   VE
Sbjct: 492 SCKPDDRVWSALLGVCRIHNNIELGRKVAERVIELKPQSSAAYVSLASLYAFLGKWESVE 551

Query: 542 KVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQMGED 597
           KVR+L++E+  +KE+ ISWI++ NK H+F  SD LHP+++ +Y +LEQLA    ED
Sbjct: 552 KVRELMDEKFIRKERGISWIDVGNKTHSFIASDRLHPLKEEIYLLLEQLARHTEED 607


>gi|15226463|ref|NP_179705.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206523|sp|Q9SKQ4.1|PP167_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g21090
 gi|4803934|gb|AAD29807.1| unknown protein [Arabidopsis thaliana]
 gi|330252028|gb|AEC07122.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 597

 Score =  727 bits (1876), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 342/583 (58%), Positives = 445/583 (76%), Gaps = 3/583 (0%)

Query: 19  CLIQSFLSL-ISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLH 77
           C+ QSFLS   +K +LS+A+S L+ L Q+GIRLP + LA +LQQC ++KSLK GK +H H
Sbjct: 12  CVAQSFLSKHATKAELSQAVSRLESLTQQGIRLPFDLLASLLQQCGDTKSLKQGKWIHRH 71

Query: 78  LKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKH 137
           LK+T  K P T LSNHLI MY KCG  +DA KVFD++ ++NL+S+NNM+SGY   GM+  
Sbjct: 72  LKITGFKRPNTLLSNHLIGMYMKCGKPIDACKVFDQMHLRNLYSWNNMVSGYVKSGMLVR 131

Query: 138 ARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVK 197
           AR +FD+M ERDVVSWNTM+IGYA+ G + E L FYK  RR  I  NEFSFAG+LT CVK
Sbjct: 132 ARVVFDSMPERDVVSWNTMVIGYAQDGNLHEALWFYKEFRRSGIKFNEFSFAGLLTACVK 191

Query: 198 LEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTM 257
             +L+L RQ HGQVLV GFLSNVV+S SI+DAYAKCG++  A+R FDE   +D+  WTT+
Sbjct: 192 SRQLQLNRQAHGQVLVAGFLSNVVLSCSIIDAYAKCGQMESAKRCFDEMTVKDIHIWTTL 251

Query: 258 VSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQ 317
           +SGYAKLGDME+A KLF EMPEKNPVSWT LIAGY R G G +AL+LF +M+ L ++P Q
Sbjct: 252 ISGYAKLGDMEAAEKLFCEMPEKNPVSWTALIAGYVRQGSGNRALDLFRKMIALGVKPEQ 311

Query: 318 HTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDL 377
            TFSSCLCA ASI SL+HGK++HG++IRTN R N IV+SSLIDMYSK G L    +VF +
Sbjct: 312 FTFSSCLCASASIASLRHGKEIHGYMIRTNVRPNAIVISSLIDMYSKSGSLEASERVFRI 371

Query: 378 TDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQE 437
            D+K + + WNTMISAL QHG   +A+R+  DM++  V+P++ TL VILNAC+HSGLV+E
Sbjct: 372 CDDKHDCVFWNTMISALAQHGLGHKALRMLDDMIKFRVQPNRTTLVVILNACSHSGLVEE 431

Query: 438 GLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVC 497
           GL +FESMT   GI+P+QEH+ACLI+LL +AGC  +LM ++E+MP+E D ++WNA+ GVC
Sbjct: 432 GLRWFESMTVQHGIVPDQEHYACLIDLLGRAGCFKELMRKIEEMPFEPDKHIWNAILGVC 491

Query: 498 RIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQA 557
           RIHGN ++G+K  D+LI  +P+SSA + LLSSIY+  GK  LVEK+R ++ +R+  KE+A
Sbjct: 492 RIHGNEELGKKAADELIKLDPESSAPYILLSSIYADHGKWELVEKLRGVMKKRRVNKEKA 551

Query: 558 ISWIEIENKVHAFSVSDS--LHPMRDVLYSVLEQLAGQMGEDA 598
           +SWIEIE KV AF+VSD    H  ++ +Y +L  LA  + E+A
Sbjct: 552 VSWIEIEKKVEAFTVSDGSHAHARKEEIYFILHNLAAVIEEEA 594


>gi|297824945|ref|XP_002880355.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297326194|gb|EFH56614.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 599

 Score =  717 bits (1852), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 338/585 (57%), Positives = 446/585 (76%), Gaps = 5/585 (0%)

Query: 19  CLIQSFLSL-ISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLH 77
           C+ +S LS   +K +LS+A+S L+ L Q+GIRLP + LA +LQQC ++KSLK GK +H H
Sbjct: 12  CVARSLLSRHATKAELSQAVSRLESLTQQGIRLPFDLLASLLQQCGDTKSLKQGKWIHRH 71

Query: 78  LKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKH 137
           LK+T  K P T LSNHLI MY KCG  +DA KVFD++ ++NL+S+NNM+SG+   GM+  
Sbjct: 72  LKITGFKRPNTLLSNHLIGMYMKCGKPIDACKVFDQMHLRNLYSWNNMVSGFVKSGMLVR 131

Query: 138 ARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVK 197
           AR +FD+M ERDVVSWNTM+IGYA+ G + E L F+K LRR  I  NEFSFAG+LT CVK
Sbjct: 132 ARVVFDSMPERDVVSWNTMVIGYAQDGNLHEALWFFKELRRSGIKFNEFSFAGLLTACVK 191

Query: 198 LEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTM 257
             +L+L +Q HGQVLV GFLSNVV+S SI+DAYAKCG++  A+R FDE   +D+  WTT+
Sbjct: 192 SRQLQLNQQAHGQVLVAGFLSNVVLSCSIIDAYAKCGQMESAKRCFDEMTVKDIHIWTTL 251

Query: 258 VSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQ 317
           +SGYAKLGDME+A KLF EMPEKNPVSWT LIAGY R G G  AL+LF +M+ +R++P Q
Sbjct: 252 ISGYAKLGDMEAADKLFREMPEKNPVSWTALIAGYVRQGSGDLALDLFRKMIAMRVKPEQ 311

Query: 318 HTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDL 377
            TFSSCLCA ASI SL+HGKQ+HG++IRTN R N IV SSLIDMYSK G L    +VF +
Sbjct: 312 FTFSSCLCASASIASLRHGKQIHGYMIRTNVRPNAIVTSSLIDMYSKSGSLEASERVFRI 371

Query: 378 TDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQE 437
             +K++ +LWNTMISAL QHG   +A+++  DM++  V P++ TL VILNAC+HSGLV+E
Sbjct: 372 CYDKQDCVLWNTMISALAQHGLGHKALQMLDDMIKFRVHPNRTTLVVILNACSHSGLVEE 431

Query: 438 GLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVC 497
           G+ +FESMT   GI+P+QEH+ACLI+LL +AGC  +LM+++E+MP+E D ++WNA+ GVC
Sbjct: 432 GVRWFESMTVQHGIVPDQEHYACLIDLLGRAGCFKELMSKIEEMPFEPDKHIWNAILGVC 491

Query: 498 RIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQA 557
           RIHGN ++G+K  ++LI  +P+SSA + LLSSIY+  GK  LVEK+R ++ +R+  KE+A
Sbjct: 492 RIHGNEELGKKAAEELIKLDPESSAPYILLSSIYADHGKWELVEKLRGIMKKRRVNKEKA 551

Query: 558 ISWIEIENKVHAFSVSDS----LHPMRDVLYSVLEQLAGQMGEDA 598
           +SWIEIENKV AF+VSD      H  ++ +Y +L  LA  M E+A
Sbjct: 552 VSWIEIENKVKAFTVSDGSHAHAHARKEEIYFILHNLAALMEEEA 596


>gi|297744641|emb|CBI37903.3| unnamed protein product [Vitis vinifera]
          Length = 516

 Score =  715 bits (1845), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 335/511 (65%), Positives = 415/511 (81%), Gaps = 7/511 (1%)

Query: 1   MPS------NFSPRGIN-RKNLPNNCLIQSFLSLISKGQLSEAISSLDLLAQRGIRLPAE 53
           MPS      NFSP   N RK     CL+++ + L  K +L+EA+SSL+ LA+RG+RL + 
Sbjct: 1   MPSLSSPNLNFSPFRTNPRKPRRRPCLVEAIVKLCKKNKLNEAVSSLENLARRGLRLDSR 60

Query: 54  TLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDK 113
           TLA +LQ CA+S++L+ GKRVHLHLKLT  K P TFLSNHLI+MY KCG +V+ARKVFDK
Sbjct: 61  TLASLLQHCADSRALREGKRVHLHLKLTGLKRPGTFLSNHLINMYAKCGKEVEARKVFDK 120

Query: 114 IPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFY 173
           +  +NL+S+NNMLSGYA LGM+K AR LFD M E+DVVSWNTM+I +A+ G  +E L+FY
Sbjct: 121 MSARNLYSWNNMLSGYAKLGMIKPARKLFDKMPEKDVVSWNTMVIAHAQCGYWDEALRFY 180

Query: 174 KVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKC 233
              R+  I CN FSFAG+LT+CVKL+E+ LTRQVHGQ+LV GFLSNVV+SSS++DAY KC
Sbjct: 181 SEFRQLGIQCNGFSFAGVLTVCVKLKEVGLTRQVHGQILVAGFLSNVVLSSSVLDAYVKC 240

Query: 234 GELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYT 293
           G + DAR+LFDE  ARDVL WTTMVSGYAK GDM+SA++LF EMPEKNPVSWT LI+GY 
Sbjct: 241 GLMGDARKLFDEMSARDVLAWTTMVSGYAKWGDMKSANELFVEMPEKNPVSWTALISGYA 300

Query: 294 RNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTI 353
           RNG+G KALELFT+MM+  +RP+Q TFSSCLCACASI SLKHGKQ+H +L+R NF+ NTI
Sbjct: 301 RNGMGHKALELFTKMMLFHVRPDQFTFSSCLCACASIASLKHGKQIHAYLLRINFQPNTI 360

Query: 354 VMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRS 413
           V+S+LIDMYSKCG L  GR+VFDL  NK + +LWNT+ISAL QHG  E+AI++  DMVRS
Sbjct: 361 VVSALIDMYSKCGSLGIGRKVFDLMGNKLDVVLWNTIISALAQHGCGEEAIQMLDDMVRS 420

Query: 414 SVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQ 473
             KPDKIT  VILNAC+HSGLVQ+GL +FESM+ D GI+P+QEH+ACLI+LL +AGC ++
Sbjct: 421 GAKPDKITFVVILNACSHSGLVQQGLNFFESMSCDYGIVPSQEHYACLIDLLGRAGCFEE 480

Query: 474 LMNQLEKMPYEHDSYLWNALHGVCRIHGNID 504
           +M+QLEKMPY+ D  +WNAL GVCRIHG+I+
Sbjct: 481 VMDQLEKMPYKPDDRVWNALLGVCRIHGHIE 511



 Score =  171 bits (433), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 103/389 (26%), Positives = 187/389 (48%), Gaps = 32/389 (8%)

Query: 157 IIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGF 216
           I+   K   + E +   + L R  +  +  + A +L  C     L+  ++VH  + +TG 
Sbjct: 31  IVKLCKKNKLNEAVSSLENLARRGLRLDSRTLASLLQHCADSRALREGKRVHLHLKLTGL 90

Query: 217 -LSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFN 275
                 +S+ +++ YAKCG+  +AR++FD+  AR++ +W  M+SGYAKLG ++ A KLF+
Sbjct: 91  KRPGTFLSNHLINMYAKCGKEVEARKVFDKMSARNLYSWNNMLSGYAKLGMIKPARKLFD 150

Query: 276 EMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKH 335
           +MPEK+ VSW T++  + + G   +AL  ++    L I+ N  +F+  L  C  +  +  
Sbjct: 151 KMPEKDVVSWNTMVIAHAQCGYWDEALRFYSEFRQLGIQCNGFSFAGVLTVCVKLKEVGL 210

Query: 336 GKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKE------------- 382
            +QVHG ++   F SN ++ SS++D Y KCG + D R++FD    ++             
Sbjct: 211 TRQVHGQILVAGFLSNVVLSSSVLDAYVKCGLMGDARKLFDEMSARDVLAWTTMVSGYAK 270

Query: 383 -----------------NSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVI 425
                            N + W  +IS   ++G   +A+ LF  M+   V+PD+ T +  
Sbjct: 271 WGDMKSANELFVEMPEKNPVSWTALISGYARNGMGHKALELFTKMMLFHVRPDQFTFSSC 330

Query: 426 LNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEH 485
           L AC     ++ G     +    +   PN    + LI++ ++ G         + M  + 
Sbjct: 331 LCACASIASLKHG-KQIHAYLLRINFQPNTIVVSALIDMYSKCGSLGIGRKVFDLMGNKL 389

Query: 486 DSYLWNALHGVCRIHGNIDMGRKVVDQLI 514
           D  LWN +      HG  +   +++D ++
Sbjct: 390 DVVLWNTIISALAQHGCGEEAIQMLDDMV 418



 Score =  166 bits (421), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 102/378 (26%), Positives = 180/378 (47%), Gaps = 42/378 (11%)

Query: 31  GQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFL 90
           G   EA+       Q GI+    + A +L  C + K + L ++VH  + L         L
Sbjct: 171 GYWDEALRFYSEFRQLGIQCNGFSFAGVLTVCVKLKEVGLTRQVHGQI-LVAGFLSNVVL 229

Query: 91  SNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDV 150
           S+ ++  Y KCG   DARK+FD++  +++ ++  M+SGYA  G MK A  LF  M E++ 
Sbjct: 230 SSSVLDAYVKCGLMGDARKLFDEMSARDVLAWTTMVSGYAKWGDMKSANELFVEMPEKNP 289

Query: 151 VSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQ 210
           VSW  +I GYA++G   + L+ +  +  F +  ++F+F+  L  C  +  LK  +Q+H  
Sbjct: 290 VSWTALISGYARNGMGHKALELFTKMMLFHVRPDQFTFSSCLCACASIASLKHGKQIHAY 349

Query: 211 VLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDAR-DVLTWTTMVSGYAKLGDMES 269
           +L   F  N ++ S+++D Y+KCG L   R++FD    + DV+ W T++S  A+ G  E 
Sbjct: 350 LLRINFQPNTIVVSALIDMYSKCGSLGIGRKVFDLMGNKLDVVLWNTIISALAQHGCGEE 409

Query: 270 ASKLFNEM----PEKNPVSWTTLIAGYTRNGLGQKALELFTRMMI-LRIRPNQHTFSSCL 324
           A ++ ++M     + + +++  ++   + +GL Q+ L  F  M     I P+Q  +    
Sbjct: 410 AIQMLDDMVRSGAKPDKITFVVILNACSHSGLVQQGLNFFESMSCDYGIVPSQEHY---- 465

Query: 325 CACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENS 384
            AC                              LID+  + GC  +     +    K + 
Sbjct: 466 -AC------------------------------LIDLLGRAGCFEEVMDQLEKMPYKPDD 494

Query: 385 MLWNTMISALTQHGYDEQ 402
            +WN ++     HG+ E+
Sbjct: 495 RVWNALLGVCRIHGHIER 512


>gi|297821407|ref|XP_002878586.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297324425|gb|EFH54845.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 786

 Score =  412 bits (1059), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 204/564 (36%), Positives = 343/564 (60%), Gaps = 6/564 (1%)

Query: 31  GQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVH-LHLKLTQRKTPTTF 89
           GQ  +AI  +  + + GI     TL  +L   A ++ L+ GK+VH   +KL  R   +  
Sbjct: 125 GQYHKAIRIMGEMMREGIEPSQFTLTNVLASVAATRCLETGKKVHSFIVKLGLRGNVS-- 182

Query: 90  LSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERD 149
           +SN L++MY KCG  + A+ VFD++ VK++ S+N M++ +  +G M  A   F+ MAERD
Sbjct: 183 VSNSLLNMYAKCGDPMMAKVVFDRMVVKDISSWNAMIALHMQVGQMDLAMAQFEQMAERD 242

Query: 150 VVSWNTMIIGYAKSGAVEEGLK-FYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVH 208
           +V+WN+MI GY + G     L  F K+LR   +S + F+ A +L+ C  LE+L +  Q+H
Sbjct: 243 IVTWNSMISGYNQRGYDLRALDMFSKMLRDSMLSPDRFTLASVLSACANLEKLCIGEQIH 302

Query: 209 GQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARD--VLTWTTMVSGYAKLGD 266
             ++ TGF  + ++ ++++  Y++CG +  ARRL ++   +D  +  +T ++ GY KLGD
Sbjct: 303 SHIVTTGFDISGIVLNALISMYSRCGGVETARRLIEQRGTKDLKIEGFTALLDGYIKLGD 362

Query: 267 MESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCA 326
           M  A  +F+ + +++ V+WT +I GY ++GL  +A+ LF  M+    RPN +T ++ L  
Sbjct: 363 MNEAKNIFDSLKDRDVVAWTAMIVGYEQHGLYGEAINLFRSMVGEEQRPNSYTLAAMLSV 422

Query: 327 CASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSML 386
            +S+ SL HGKQ+HG  +++    +  V ++LI MY+K G +    + FDL   + +++ 
Sbjct: 423 ASSLASLGHGKQIHGSAVKSGEIYSVSVSNALITMYAKAGSITSASRAFDLIRCERDTVS 482

Query: 387 WNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMT 446
           W +MI AL QHG+ E+A+ LF  M+   ++PD IT   + +ACTH+GLV +G  YF+ M 
Sbjct: 483 WTSMIIALAQHGHAEEALELFETMLMEGLRPDHITYVGVFSACTHAGLVNQGRQYFDMMK 542

Query: 447 HDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMG 506
               IIP   H+AC+++L  +AG   +    +EKMP E D   W +L   CR++ NID+G
Sbjct: 543 DVDKIIPTLSHYACMVDLFGRAGLLQEAQEFIEKMPIEPDVVTWGSLLSACRVYKNIDLG 602

Query: 507 RKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENK 566
           +   ++L+   P++S  +  L+++YSA GK     K+R+ + + + KKEQ  SWIE+++K
Sbjct: 603 KVAAERLLLLEPENSGAYSALANLYSACGKWEEAAKIRKSMKDGRVKKEQGFSWIEVKHK 662

Query: 567 VHAFSVSDSLHPMRDVLYSVLEQL 590
           VHAF V D +HP ++ +Y  ++++
Sbjct: 663 VHAFGVEDGIHPQKNEIYITMKKI 686



 Score =  230 bits (586), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 139/509 (27%), Positives = 253/509 (49%), Gaps = 64/509 (12%)

Query: 87  TTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMA 146
           + +L N+L+++Y K G  + ARK+FD++P++  FS+N +LS YA  G M  +   FD + 
Sbjct: 48  SVYLMNNLMNVYSKTGYALHARKLFDEMPLRTAFSWNTVLSAYAKRGDMDSSCEFFDRLP 107

Query: 147 ERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQ 206
           +RD VSW TMI+GY   G   + ++    + R  I  ++F+   +L        L+  ++
Sbjct: 108 QRDSVSWTTMIVGYKNIGQYHKAIRIMGEMMREGIEPSQFTLTNVLASVAATRCLETGKK 167

Query: 207 VHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGD 266
           VH  ++  G   NV +S+S+++ YAKCG+   A+ +FD    +D+ +W  M++ + ++G 
Sbjct: 168 VHSFIVKLGLRGNVSVSNSLLNMYAKCGDPMMAKVVFDRMVVKDISSWNAMIALHMQVGQ 227

Query: 267 MESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILR---IRPNQHTFSSC 323
           M+ A   F +M E++ V+W ++I+GY + G   +AL++F++M  LR   + P++ T +S 
Sbjct: 228 MDLAMAQFEQMAERDIVTWNSMISGYNQRGYDLRALDMFSKM--LRDSMLSPDRFTLASV 285

Query: 324 LCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGC---------------- 367
           L ACA++  L  G+Q+H  ++ T F  + IV+++LI MYS+CG                 
Sbjct: 286 LSACANLEKLCIGEQIHSHIVTTGFDISGIVLNALISMYSRCGGVETARRLIEQRGTKDL 345

Query: 368 -----------------LNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDM 410
                            +N+ + +FD   ++ + + W  MI    QHG   +AI LF  M
Sbjct: 346 KIEGFTALLDGYIKLGDMNEAKNIFDSLKDR-DVVAWTAMIVGYEQHGLYGEAINLFRSM 404

Query: 411 VRSSVKPDKITLAVILNACT-----------HSGLVQEGLTYFESMTHDLGIIPNQEHHA 459
           V    +P+  TLA +L+  +           H   V+ G  Y  S+++            
Sbjct: 405 VGEEQRPNSYTLAAMLSVASSLASLGHGKQIHGSAVKSGEIYSVSVSN------------ 452

Query: 460 CLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQ 519
            LI + A+AG         + +  E D+  W ++      HG+ +   ++ + ++ +  +
Sbjct: 453 ALITMYAKAGSITSASRAFDLIRCERDTVSWTSMIIALAQHGHAEEALELFETMLMEGLR 512

Query: 520 SSATHGLLSSIYSALGKGRLVEKVRQLIN 548
               H     ++SA     LV + RQ  +
Sbjct: 513 PD--HITYVGVFSACTHAGLVNQGRQYFD 539



 Score =  169 bits (428), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 94/285 (32%), Positives = 155/285 (54%), Gaps = 39/285 (13%)

Query: 186 FSFAGILTICVKLEELKLTRQ--------VHGQVLVTGFLSNVVISSSIVDAYAKCGELS 237
            S + +L +C  L +  + +         VH +V+ +G + +V + +++++ Y+K G   
Sbjct: 7   LSLSTLLELCTNLLQKSVNKSNGRFTAQLVHCRVIKSGLVFSVYLMNNLMNVYSKTGYAL 66

Query: 238 DARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGL 297
            AR+LFDE   R   +W T++S YAK GDM+S+ + F+ +P+++ VSWTT+I GY   G 
Sbjct: 67  HARKLFDEMPLRTAFSWNTVLSAYAKRGDMDSSCEFFDRLPQRDSVSWTTMIVGYKNIGQ 126

Query: 298 GQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSS 357
             KA+ +   MM   I P+Q T ++ L + A+   L+ GK+VH F+++   R N  V +S
Sbjct: 127 YHKAIRIMGEMMREGIEPSQFTLTNVLASVAATRCLETGKKVHSFIVKLGLRGNVSVSNS 186

Query: 358 LIDMYSKCGCLNDGRQVFDLTDNKE----NSML--------------------------W 387
           L++MY+KCG     + VFD    K+    N+M+                          W
Sbjct: 187 LLNMYAKCGDPMMAKVVFDRMVVKDISSWNAMIALHMQVGQMDLAMAQFEQMAERDIVTW 246

Query: 388 NTMISALTQHGYDEQAIRLFHDMVRSS-VKPDKITLAVILNACTH 431
           N+MIS   Q GYD +A+ +F  M+R S + PD+ TLA +L+AC +
Sbjct: 247 NSMISGYNQRGYDLRALDMFSKMLRDSMLSPDRFTLASVLSACAN 291


>gi|242050732|ref|XP_002463110.1| hypothetical protein SORBIDRAFT_02g037960 [Sorghum bicolor]
 gi|241926487|gb|EER99631.1| hypothetical protein SORBIDRAFT_02g037960 [Sorghum bicolor]
          Length = 802

 Score =  400 bits (1028), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 208/582 (35%), Positives = 324/582 (55%), Gaps = 24/582 (4%)

Query: 21  IQSFLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQ-QCAESKSLKLGKRVHLHLK 79
           +  F SL++ G L     S   L      LP  ++    Q QC+  KS   G        
Sbjct: 141 VAVFRSLLASGSLRPDDYSFTALLSAAGHLPNISVRHCAQLQCSVLKSGAGG-------- 192

Query: 80  LTQRKTPTTFLSNHLISMYFKCGS---DVDARKVFDKIPVKNLFSYNNMLSGYANLGMMK 136
                     +SN L+++Y KC +     DARKV D++P K+  ++  M+ GY   G + 
Sbjct: 193 -------VLSVSNALVALYMKCEALEATRDARKVLDEMPDKDALTWTTMVVGYVRRGDVG 245

Query: 137 HARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICV 196
            AR++F+ +  +  V WN MI GY  SG V E  + ++ +    +  +EF+F  +L+ C 
Sbjct: 246 AARSVFEEVDVKFDVVWNAMISGYVHSGMVVEAFELFRRMVLERVPLDEFTFTSVLSACA 305

Query: 197 KLEELKLTRQVHGQV--LVTGFLSNVV--ISSSIVDAYAKCGELSDARRLFDETDARDVL 252
                   + VHGQ+  L   F+      +++++V  Y+KCG ++ ARR+FD   ++DV+
Sbjct: 306 NAGFFAHGKSVHGQITRLQPNFVPEAALPVNNALVTLYSKCGNIAVARRIFDNMKSKDVV 365

Query: 253 TWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILR 312
           +W T++SGY +   ++ A ++F EMP KN +SW  +++GY   G  + AL+LF RM    
Sbjct: 366 SWNTILSGYVESSCLDKAVEVFEEMPYKNELSWMVMVSGYVHGGFSEDALKLFNRMRAED 425

Query: 313 IRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGR 372
           ++P  +T++  + AC  + SLKHGKQ+HG L++  F  +    ++LI MY++CG + +  
Sbjct: 426 VKPCDYTYAGAISACGELGSLKHGKQLHGHLVQLGFEGSNSAGNALITMYARCGAVKEAN 485

Query: 373 QVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHS 432
            +F +  N + S+ WN MISAL QHG+  +A+ LF  MV   + PD+I+   +L AC HS
Sbjct: 486 LMFLVMPNID-SVSWNAMISALGQHGHGREALELFDRMVAEGIYPDRISFLTVLTACNHS 544

Query: 433 GLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNA 492
           GLV EG  YFESM  D GIIP ++H+  LI+LL +AG   +  + ++ MP+E    +W A
Sbjct: 545 GLVDEGFQYFESMKRDFGIIPGEDHYTRLIDLLGRAGRIGEARDLIKTMPFEPTPSIWEA 604

Query: 493 LHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQF 552
           +   CR  G++++G    DQL    PQ   T+ LLS+ YSA G+     +VR+L+ +R  
Sbjct: 605 ILSGCRTSGDMELGAHAADQLFKMTPQHDGTYILLSNTYSAAGRWVDAARVRKLMRDRGV 664

Query: 553 KKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQM 594
           KKE   SWIE  NKVH F V D+ HP    +Y  LE +  +M
Sbjct: 665 KKEPGCSWIEAGNKVHVFVVGDTKHPEAHKVYKFLEMVGARM 706


>gi|224096249|ref|XP_002310592.1| predicted protein [Populus trichocarpa]
 gi|222853495|gb|EEE91042.1| predicted protein [Populus trichocarpa]
          Length = 747

 Score =  399 bits (1025), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 200/546 (36%), Positives = 330/546 (60%), Gaps = 7/546 (1%)

Query: 50  LPAE-TLAFILQQCAESKSLKLGKRVH-LHLKLTQRKTPTTFLSNHLISMYFKCGSDVDA 107
           LP + TL  +L  CA + S  +GK+VH   +KL         ++N L++MY K G    A
Sbjct: 104 LPTQFTLTNVLASCAATGSRGIGKKVHSFVVKLGLHACVP--VANSLLNMYAKTGDLKMA 161

Query: 108 RKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVE 167
           + VFD++ ++N  S+N M+S + N G +  A   F+ ++ERD+VSWN+MI G  + G   
Sbjct: 162 KVVFDRMKLRNTSSWNAMISLHMNCGRVDLALAQFELLSERDIVSWNSMIAGCNQHGFDN 221

Query: 168 EGLKFYK-VLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSI 226
           E L+F+  +L+  S+  + FS A  L+ C  LE+L   +Q+HG ++ T F ++  + +++
Sbjct: 222 EALQFFSSILKDTSLKPDRFSLASALSACANLEKLSFGKQIHGYIVRTMFDASGAVGNAL 281

Query: 227 VDAYAKCGELSDARRLFDETDARD--VLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVS 284
           +  YAK G +  ARR+ +++   D  V+ +T +++GY KLGD+  A ++FN + + + V+
Sbjct: 282 ISMYAKSGGVEIARRIIEQSGISDLDVIAFTALLNGYVKLGDITPARQIFNSLKDPDVVA 341

Query: 285 WTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLI 344
           WT +I GY +NGL   A+E+F  M+    RPN  T ++ L A +S+ SL HGKQ+H   I
Sbjct: 342 WTAMIVGYVQNGLNNDAIEVFKTMVSEGPRPNSFTLAAMLSASSSVTSLNHGKQIHASAI 401

Query: 345 RTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAI 404
           R+    +  V ++L  MY+K G +N  R+VF+L     +++ W +MI AL QHG  E+AI
Sbjct: 402 RSGEALSPSVGNALTTMYAKAGSINGARKVFNLLRQNRDTVSWTSMIMALAQHGLGEEAI 461

Query: 405 RLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIEL 464
            LF  M+   +KPD IT   +L+ACTH GLV++G +YF+ M +   I P   H+AC+++L
Sbjct: 462 ELFEQMLTLGIKPDHITYVGVLSACTHGGLVEQGRSYFDLMKNVHKIDPTLSHYACMVDL 521

Query: 465 LAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATH 524
             +AG   +    +E MP E D   W +L   C+++ N+D+ +   ++L+   P +S  +
Sbjct: 522 FGRAGLLQEAYKFVENMPMEPDVIAWGSLLSSCKVYKNVDLAKVAAERLLLIEPNNSGAY 581

Query: 525 GLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLY 584
             L+++YS+ GK     K+R+L+  R  KKEQ +SW++I+NK H F V D LHP +D +Y
Sbjct: 582 SALANVYSSCGKWDDAAKIRKLMKARGVKKEQGLSWVQIQNKTHVFGVEDGLHPQKDEIY 641

Query: 585 SVLEQL 590
            +++++
Sbjct: 642 KMMDKI 647



 Score =  215 bits (548), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 136/508 (26%), Positives = 253/508 (49%), Gaps = 58/508 (11%)

Query: 85  TPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDN 144
           T + +L N+L+++Y K G  +DA  +F+++PVK  FS+N +LSGYA  G ++ A  +FD 
Sbjct: 7   TFSVYLMNNLMNLYAKTGFHLDAHDLFNEMPVKTTFSWNTILSGYAKQGKLEKAHQVFDL 66

Query: 145 MAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLT 204
           +  RD VSW T+I+GY + G  E+ +K +  + +  +   +F+   +L  C       + 
Sbjct: 67  IPVRDSVSWTTIIVGYNQMGRFEDAIKIFVDMVKDKVLPTQFTLTNVLASCAATGSRGIG 126

Query: 205 RQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKL 264
           ++VH  V+  G  + V +++S+++ YAK G+L  A+ +FD    R+  +W  M+S +   
Sbjct: 127 KKVHSFVVKLGLHACVPVANSLLNMYAKTGDLKMAKVVFDRMKLRNTSSWNAMISLHMNC 186

Query: 265 GDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMI-LRIRPNQHTFSSC 323
           G ++ A   F  + E++ VSW ++IAG  ++G   +AL+ F+ ++    ++P++ + +S 
Sbjct: 187 GRVDLALAQFELLSERDIVSWNSMIAGCNQHGFDNEALQFFSSILKDTSLKPDRFSLASA 246

Query: 324 LCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVF-------- 375
           L ACA++  L  GKQ+HG+++RT F ++  V ++LI MY+K G +   R++         
Sbjct: 247 LSACANLEKLSFGKQIHGYIVRTMFDASGAVGNALISMYAKSGGVEIARRIIEQSGISDL 306

Query: 376 ----------------DLTDNKE--NSM------LWNTMISALTQHGYDEQAIRLFHDMV 411
                           D+T  ++  NS+       W  MI    Q+G +  AI +F  MV
Sbjct: 307 DVIAFTALLNGYVKLGDITPARQIFNSLKDPDVVAWTAMIVGYVQNGLNNDAIEVFKTMV 366

Query: 412 RSSVKPDKITLAVILNACT-----------HSGLVQEGLTYFESMTHDLGIIPNQEHHAC 460
               +P+  TLA +L+A +           H+  ++ G    E+++  +G          
Sbjct: 367 SEGPRPNSFTLAAMLSASSSVTSLNHGKQIHASAIRSG----EALSPSVG--------NA 414

Query: 461 LIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQS 520
           L  + A+AG  +        +    D+  W ++      HG  +   ++ +Q++    + 
Sbjct: 415 LTTMYAKAGSINGARKVFNLLRQNRDTVSWTSMIMALAQHGLGEEAIELFEQMLTLGIKP 474

Query: 521 SATHGLLSSIYSALGKGRLVEKVRQLIN 548
              H     + SA   G LVE+ R   +
Sbjct: 475 D--HITYVGVLSACTHGGLVEQGRSYFD 500



 Score =  149 bits (376), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 79/248 (31%), Positives = 139/248 (56%), Gaps = 31/248 (12%)

Query: 215 GFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLF 274
           G   +V + +++++ YAK G   DA  LF+E   +   +W T++SGYAK G +E A ++F
Sbjct: 5   GLTFSVYLMNNLMNLYAKTGFHLDAHDLFNEMPVKTTFSWNTILSGYAKQGKLEKAHQVF 64

Query: 275 NEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLK 334
           + +P ++ VSWTT+I GY + G  + A+++F  M+  ++ P Q T ++ L +CA+  S  
Sbjct: 65  DLIPVRDSVSWTTIIVGYNQMGRFEDAIKIFVDMVKDKVLPTQFTLTNVLASCAATGSRG 124

Query: 335 HGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFD----LTDNKENSML---- 386
            GK+VH F+++    +   V +SL++MY+K G L   + VFD       +  N+M+    
Sbjct: 125 IGKKVHSFVVKLGLHACVPVANSLLNMYAKTGDLKMAKVVFDRMKLRNTSSWNAMISLHM 184

Query: 387 ----------------------WNTMISALTQHGYDEQAIRLFHDMVR-SSVKPDKITLA 423
                                 WN+MI+   QHG+D +A++ F  +++ +S+KPD+ +LA
Sbjct: 185 NCGRVDLALAQFELLSERDIVSWNSMIAGCNQHGFDNEALQFFSSILKDTSLKPDRFSLA 244

Query: 424 VILNACTH 431
             L+AC +
Sbjct: 245 SALSACAN 252



 Score = 64.7 bits (156), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 60/241 (24%), Positives = 105/241 (43%), Gaps = 47/241 (19%)

Query: 28  ISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLH-LKLTQRKTP 86
           +  G  ++AI     +   G R  + TLA +L   +   SL  GK++H   ++  +  +P
Sbjct: 350 VQNGLNNDAIEVFKTMVSEGPRPNSFTLAAMLSASSSVTSLNHGKQIHASAIRSGEALSP 409

Query: 87  TTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMA 146
           +  + N L +MY K GS   ARKVF      NL   N                       
Sbjct: 410 S--VGNALTTMYAKAGSINGARKVF------NLLRQN----------------------- 438

Query: 147 ERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVK---LEE--- 200
            RD VSW +MI+  A+ G  EE ++ ++ +    I  +  ++ G+L+ C     +E+   
Sbjct: 439 -RDTVSWTSMIMALAQHGLGEEAIELFEQMLTLGIKPDHITYVGVLSACTHGGLVEQGRS 497

Query: 201 -LKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDAR-DVLTWTTMV 258
              L + VH    +   LS+    + +VD + + G L +A +  +      DV+ W +++
Sbjct: 498 YFDLMKNVHK---IDPTLSHY---ACMVDLFGRAGLLQEAYKFVENMPMEPDVIAWGSLL 551

Query: 259 S 259
           S
Sbjct: 552 S 552


>gi|125588087|gb|EAZ28751.1| hypothetical protein OsJ_12773 [Oryza sativa Japonica Group]
          Length = 698

 Score =  399 bits (1025), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 193/573 (33%), Positives = 341/573 (59%), Gaps = 14/573 (2%)

Query: 31  GQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVH---LHLKLTQRKTPT 87
           G+  EAI +L  +   G      TL  +L  CA +++  +G++VH   + L L       
Sbjct: 37  GRFGEAIKTLLDMTADGFTPTQFTLTNVLSSCAVTQAGAVGRKVHSFVVKLGLGS----C 92

Query: 88  TFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAE 147
             ++N +++MY KCG    A  VF+++PV+++ S+N M+S   +LG M  A +LF++M +
Sbjct: 93  VPVANSVLNMYGKCGDSETATTVFERMPVRSVSSWNAMVSLNTHLGRMDLAESLFESMPD 152

Query: 148 RDVVSWNTMIIGYAKSGAVEEGLK-FYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQ 206
           R +VSWN MI GY ++G   + LK F ++L   S++ +EF+   +L+ C  L  +++ +Q
Sbjct: 153 RSIVSWNAMIAGYNQNGLDAKALKLFSRMLHESSMAPDEFTITSVLSACANLGNVRIGKQ 212

Query: 207 VHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARD--VLTWTTMVSGYAKL 264
           VH  +L T    N  ++++++  YAK G + +ARR+ D++   D  V+++T ++ GY K+
Sbjct: 213 VHAYILRTEMAYNSQVTNALISTYAKSGSVENARRIMDQSMETDLNVISFTALLEGYVKI 272

Query: 265 GDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCL 324
           GDMESA ++F  M  ++ V+WT +I GY +NG   +A++LF  M+     PN +T ++ L
Sbjct: 273 GDMESAREMFGVMNNRDVVAWTAMIVGYEQNGRNDEAIDLFRSMITCGPEPNSYTLAAVL 332

Query: 325 CACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENS 384
             CAS+  L +GKQ+H   IR+    ++ V +++I MY++ G     R++FD    ++ +
Sbjct: 333 SVCASLACLDYGKQIHCRAIRSLLEQSSSVSNAIITMYARSGSFPWARRMFDQVCWRKET 392

Query: 385 MLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFES 444
           + W +MI AL QHG  E+A+ LF +M+R+ V+PD+IT   +L+AC+H+G V EG  Y++ 
Sbjct: 393 ITWTSMIVALAQHGQGEEAVGLFEEMLRAGVEPDRITYVGVLSACSHAGFVNEGKRYYDQ 452

Query: 445 MTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNID 504
           + ++  I P   H+AC+++LLA+AG   +    + +MP E D+  W +L   CR+H N +
Sbjct: 453 IKNEHQIAPEMSHYACMVDLLARAGLFSEAQEFIRRMPVEPDAIAWGSLLSACRVHKNAE 512

Query: 505 MGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIE 564
           +     ++L+  +P +S  +  ++++YSA G+     ++ +   E+  +KE   SW  I 
Sbjct: 513 LAELAAEKLLSIDPNNSGAYSAIANVYSACGRWSDAARIWKARKEKAVRKETGFSWTHIR 572

Query: 565 NKVHAFSVSDSLHPMRDVLYSVLEQLAGQMGED 597
           +K+H F   D +HP RD +Y+    +A +M E+
Sbjct: 573 SKIHVFGADDVVHPQRDAVYA----MAARMWEE 601



 Score =  198 bits (503), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 129/469 (27%), Positives = 222/469 (47%), Gaps = 50/469 (10%)

Query: 129 YANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSF 188
           +A  G +  AR +F  M ERD VSW  M++G  ++G   E +K    +     +  +F+ 
Sbjct: 2   FAKSGRLADARGVFAEMPERDAVSWTVMVVGLNRAGRFGEAIKTLLDMTADGFTPTQFTL 61

Query: 189 AGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDA 248
             +L+ C   +   + R+VH  V+  G  S V +++S+++ Y KCG+   A  +F+    
Sbjct: 62  TNVLSSCAVTQAGAVGRKVHSFVVKLGLGSCVPVANSVLNMYGKCGDSETATTVFERMPV 121

Query: 249 RDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRM 308
           R V +W  MVS    LG M+ A  LF  MP+++ VSW  +IAGY +NGL  KAL+LF+RM
Sbjct: 122 RSVSSWNAMVSLNTHLGRMDLAESLFESMPDRSIVSWNAMIAGYNQNGLDAKALKLFSRM 181

Query: 309 M-ILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGC 367
           +    + P++ T +S L ACA++ +++ GKQVH +++RT    N+ V ++LI  Y+K G 
Sbjct: 182 LHESSMAPDEFTITSVLSACANLGNVRIGKQVHAYILRTEMAYNSQVTNALISTYAKSGS 241

Query: 368 LNDGRQVFDL---TD-----------------------------NKENSMLWNTMISALT 395
           + + R++ D    TD                             N  + + W  MI    
Sbjct: 242 VENARRIMDQSMETDLNVISFTALLEGYVKIGDMESAREMFGVMNNRDVVAWTAMIVGYE 301

Query: 396 QHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEG----LTYFESMTHDLGI 451
           Q+G +++AI LF  M+    +P+  TLA +L+ C     +  G         S+      
Sbjct: 302 QNGRNDEAIDLFRSMITCGPEPNSYTLAAVLSVCASLACLDYGKQIHCRAIRSLLEQSSS 361

Query: 452 IPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVD 511
           + N      +I + A++G         +++ +  ++  W ++      HG  +    + +
Sbjct: 362 VSN-----AIITMYARSGSFPWARRMFDQVCWRKETITWTSMIVALAQHGQGEEAVGLFE 416

Query: 512 QLIDQN--PQSSATHGLLSSIYSALGKGRLVEKVR---QLINERQFKKE 555
           +++     P      G+LS+   A   G + E  R   Q+ NE Q   E
Sbjct: 417 EMLRAGVEPDRITYVGVLSACSHA---GFVNEGKRYYDQIKNEHQIAPE 462


>gi|359497788|ref|XP_002273247.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g13600-like [Vitis vinifera]
          Length = 580

 Score =  399 bits (1024), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 208/569 (36%), Positives = 334/569 (58%), Gaps = 18/569 (3%)

Query: 33  LSEAISSLDLLAQRGIRLPA-ETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLS 91
           L+E +SSLD         PA +  + ++ +C  ++ LKLGK +H H   T     TTFL+
Sbjct: 3   LNETLSSLD---------PAHQHYSSLISKCITTRHLKLGKLLHSHFIKTAL-IFTTFLA 52

Query: 92  NHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVV 151
           N LI  Y KC S   A KVF  +PVKN  S+N ++S Y+  G+   A NL D M + ++V
Sbjct: 53  NRLIDFYSKCDSIQSAHKVFHVLPVKNTHSWNIIISAYSRSGLFNEAHNLLDQMPKPNLV 112

Query: 152 SWNTMIIGYAKSGAVEEGLKFYKVLRR--FSISCNEFSFAGILTICVKLEELKLTRQVHG 209
           S+N++I G    G  +E L  +K + +   ++  +EF+   ++  C  L   +L RQVHG
Sbjct: 113 SYNSLISGLGHHGFRKESLNVFKTMLKQCSNVLFDEFTLVSLVGSCASLGAPELLRQVHG 172

Query: 210 QVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMES 269
             ++ G  SN++I ++++DAY KCGE   +  +F     RDV++WT+MV+ YA+   +E 
Sbjct: 173 AAIIIGLNSNIIIGNALIDAYGKCGEPDISFSIFSRMPERDVVSWTSMVAAYAQASRLED 232

Query: 270 ASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACAS 329
           A  LF++M EKN VSWT LIAG+ +NG G +AL LF +M    I P+  TF+S L ACA 
Sbjct: 233 AHWLFSQMQEKNTVSWTALIAGFAQNGRGDEALHLFEQMREEGIPPSAFTFASVLSACAD 292

Query: 330 IVSLKHGKQVHGFLIRT---NFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSML 386
           +  +  GK++HG +IR+   ++  N  ++++LIDMY KCG +     +F     K+  + 
Sbjct: 293 LALIARGKEIHGHIIRSTCIDYFCNIFILNALIDMYCKCGQMRSATTLFKGMHEKD-IVS 351

Query: 387 WNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMT 446
           WN++I+   Q+G+ E+++ +F  M+ + ++P+ +T   +L+AC H+GLV EGL   +SM 
Sbjct: 352 WNSLITGFAQNGHGEESLAVFERMIEADIRPNHVTFLGLLSACCHTGLVSEGLRILDSME 411

Query: 447 HDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSY-LWNALHGVCRIHGNIDM 505
            D G+ P  +H+A +I+LL +    ++ M  +++ P   D   +W AL G CRIHGN+D+
Sbjct: 412 KDYGVCPRSDHYAIMIDLLGRNNRLEEAMGLIKRAPKGSDHVGMWGALLGACRIHGNMDL 471

Query: 506 GRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIEN 565
            R+  + L    P ++A + ++ +IY+A  +     +VR+L+ ER  +KE A SWIE+ N
Sbjct: 472 ARRAAEVLFQLEPGNAARYVMVYNIYAAASRWDEARQVRRLMMERGLRKEAACSWIEVRN 531

Query: 566 KVHAFSVSDSLHPMRDVLYSVLEQLAGQM 594
             H F   +  H   + +Y V+  L  QM
Sbjct: 532 TRHQFVAKERSHCQINEVYEVIHNLVDQM 560



 Score = 65.5 bits (158), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 44/157 (28%), Positives = 78/157 (49%), Gaps = 12/157 (7%)

Query: 31  GQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKT----- 85
           G+  EA+   + + + GI   A T A +L  CA+   +  GK +H H+    R T     
Sbjct: 259 GRGDEALHLFEQMREEGIPPSAFTFASVLSACADLALIARGKEIHGHII---RSTCIDYF 315

Query: 86  PTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNM 145
              F+ N LI MY KCG    A  +F  +  K++ S+N++++G+A  G  + +  +F+ M
Sbjct: 316 CNIFILNALIDMYCKCGQMRSATTLFKGMHEKDIVSWNSLITGFAQNGHGEESLAVFERM 375

Query: 146 AERDV----VSWNTMIIGYAKSGAVEEGLKFYKVLRR 178
            E D+    V++  ++     +G V EGL+    + +
Sbjct: 376 IEADIRPNHVTFLGLLSACCHTGLVSEGLRILDSMEK 412


>gi|115455659|ref|NP_001051430.1| Os03g0775400 [Oryza sativa Japonica Group]
 gi|24899461|gb|AAN65031.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|108711328|gb|ABF99123.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113549901|dbj|BAF13344.1| Os03g0775400 [Oryza sativa Japonica Group]
 gi|215741536|dbj|BAG98031.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 804

 Score =  399 bits (1024), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 193/573 (33%), Positives = 341/573 (59%), Gaps = 14/573 (2%)

Query: 31  GQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVH---LHLKLTQRKTPT 87
           G+  EAI +L  +   G      TL  +L  CA +++  +G++VH   + L L       
Sbjct: 143 GRFGEAIKTLLDMTADGFTPTQFTLTNVLSSCAVTQAGAVGRKVHSFVVKLGLGS----C 198

Query: 88  TFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAE 147
             ++N +++MY KCG    A  VF+++PV+++ S+N M+S   +LG M  A +LF++M +
Sbjct: 199 VPVANSVLNMYGKCGDSETATTVFERMPVRSVSSWNAMVSLNTHLGRMDLAESLFESMPD 258

Query: 148 RDVVSWNTMIIGYAKSGAVEEGLK-FYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQ 206
           R +VSWN MI GY ++G   + LK F ++L   S++ +EF+   +L+ C  L  +++ +Q
Sbjct: 259 RSIVSWNAMIAGYNQNGLDAKALKLFSRMLHESSMAPDEFTITSVLSACANLGNVRIGKQ 318

Query: 207 VHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARD--VLTWTTMVSGYAKL 264
           VH  +L T    N  ++++++  YAK G + +ARR+ D++   D  V+++T ++ GY K+
Sbjct: 319 VHAYILRTEMAYNSQVTNALISTYAKSGSVENARRIMDQSMETDLNVISFTALLEGYVKI 378

Query: 265 GDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCL 324
           GDMESA ++F  M  ++ V+WT +I GY +NG   +A++LF  M+     PN +T ++ L
Sbjct: 379 GDMESAREMFGVMNNRDVVAWTAMIVGYEQNGRNDEAIDLFRSMITCGPEPNSYTLAAVL 438

Query: 325 CACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENS 384
             CAS+  L +GKQ+H   IR+    ++ V +++I MY++ G     R++FD    ++ +
Sbjct: 439 SVCASLACLDYGKQIHCRAIRSLLEQSSSVSNAIITMYARSGSFPWARRMFDQVCWRKET 498

Query: 385 MLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFES 444
           + W +MI AL QHG  E+A+ LF +M+R+ V+PD+IT   +L+AC+H+G V EG  Y++ 
Sbjct: 499 ITWTSMIVALAQHGQGEEAVGLFEEMLRAGVEPDRITYVGVLSACSHAGFVNEGKRYYDQ 558

Query: 445 MTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNID 504
           + ++  I P   H+AC+++LLA+AG   +    + +MP E D+  W +L   CR+H N +
Sbjct: 559 IKNEHQIAPEMSHYACMVDLLARAGLFSEAQEFIRRMPVEPDAIAWGSLLSACRVHKNAE 618

Query: 505 MGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIE 564
           +     ++L+  +P +S  +  ++++YSA G+     ++ +   E+  +KE   SW  I 
Sbjct: 619 LAELAAEKLLSIDPNNSGAYSAIANVYSACGRWSDAARIWKARKEKAVRKETGFSWTHIR 678

Query: 565 NKVHAFSVSDSLHPMRDVLYSVLEQLAGQMGED 597
           +K+H F   D +HP RD +Y+    +A +M E+
Sbjct: 679 SKIHVFGADDVVHPQRDAVYA----MAARMWEE 707



 Score =  233 bits (594), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 153/548 (27%), Positives = 267/548 (48%), Gaps = 57/548 (10%)

Query: 56  AFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFK----CGSDVDARKVF 111
           A +LQ C  + +   G+ +H    +      + +L N+L+S Y +     G   DAR++F
Sbjct: 30  ARLLQLCQTAANPGAGRAIHAR-AVKAGLLASAYLCNNLLSYYGETAGGAGGLRDARRLF 88

Query: 112 DKIPV--KNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEG 169
           D+IP+  +N+F++N++LS +A  G +  AR +F  M ERD VSW  M++G  ++G   E 
Sbjct: 89  DEIPLARRNVFTWNSLLSMFAKSGRLADARGVFAEMPERDAVSWTVMVVGLNRAGRFGEA 148

Query: 170 LKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDA 229
           +K    +     +  +F+   +L+ C   +   + R+VH  V+  G  S V +++S+++ 
Sbjct: 149 IKTLLDMTADGFTPTQFTLTNVLSSCAVTQAGAVGRKVHSFVVKLGLGSCVPVANSVLNM 208

Query: 230 YAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLI 289
           Y KCG+   A  +F+    R V +W  MVS    LG M+ A  LF  MP+++ VSW  +I
Sbjct: 209 YGKCGDSETATTVFERMPVRSVSSWNAMVSLNTHLGRMDLAESLFESMPDRSIVSWNAMI 268

Query: 290 AGYTRNGLGQKALELFTRMM-ILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNF 348
           AGY +NGL  KAL+LF+RM+    + P++ T +S L ACA++ +++ GKQVH +++RT  
Sbjct: 269 AGYNQNGLDAKALKLFSRMLHESSMAPDEFTITSVLSACANLGNVRIGKQVHAYILRTEM 328

Query: 349 RSNTIVMSSLIDMYSKCGCLNDGRQVFDL---TD-------------------------- 379
             N+ V ++LI  Y+K G + + R++ D    TD                          
Sbjct: 329 AYNSQVTNALISTYAKSGSVENARRIMDQSMETDLNVISFTALLEGYVKIGDMESAREMF 388

Query: 380 ---NKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQ 436
              N  + + W  MI    Q+G +++AI LF  M+    +P+  TLA +L+ C     + 
Sbjct: 389 GVMNNRDVVAWTAMIVGYEQNGRNDEAIDLFRSMITCGPEPNSYTLAAVLSVCASLACLD 448

Query: 437 EG----LTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNA 492
            G         S+      + N      +I + A++G         +++ +  ++  W +
Sbjct: 449 YGKQIHCRAIRSLLEQSSSVSN-----AIITMYARSGSFPWARRMFDQVCWRKETITWTS 503

Query: 493 LHGVCRIHGNIDMGRKVVDQLIDQN--PQSSATHGLLSSIYSALGKGRLVEKVR---QLI 547
           +      HG  +    + ++++     P      G+LS+   A   G + E  R   Q+ 
Sbjct: 504 MIVALAQHGQGEEAVGLFEEMLRAGVEPDRITYVGVLSACSHA---GFVNEGKRYYDQIK 560

Query: 548 NERQFKKE 555
           NE Q   E
Sbjct: 561 NEHQIAPE 568


>gi|125545880|gb|EAY92019.1| hypothetical protein OsI_13712 [Oryza sativa Indica Group]
          Length = 804

 Score =  397 bits (1020), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 193/573 (33%), Positives = 340/573 (59%), Gaps = 14/573 (2%)

Query: 31  GQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVH---LHLKLTQRKTPT 87
           G+  EAI +L  +   G      TL  +L  CA +++  +G++VH   + L L       
Sbjct: 143 GRFGEAIKTLLDMTADGFTPTQFTLTNVLSSCAVTQAGAVGRKVHSFVVKLGLGS----C 198

Query: 88  TFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAE 147
             ++N +++MY KCG    A  VF+++PV+++ S+N M+S   +LG M  A +LF++M  
Sbjct: 199 VPVANSVLNMYGKCGDAETASTVFERMPVRSVSSWNAMVSLNTHLGRMDLAESLFESMPG 258

Query: 148 RDVVSWNTMIIGYAKSGAVEEGLK-FYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQ 206
           R +VSWN MI GY ++G   + LK F ++L   S++ +EF+   +L+ C  L  +++ +Q
Sbjct: 259 RSIVSWNAMIAGYNQNGLDAKALKLFSRMLHESSMAPDEFTITSVLSACANLGNVRIGKQ 318

Query: 207 VHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARD--VLTWTTMVSGYAKL 264
           VH  +L T    N  ++++++  YAK G + +ARR+ D++   D  V+++T ++ GY K+
Sbjct: 319 VHAYILRTEMAYNSQVTNALISTYAKSGSVENARRIMDQSMETDLNVISFTALLEGYVKI 378

Query: 265 GDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCL 324
           GDMESA ++F  M  ++ V+WT +I GY +NG   +A++LF  M+     PN +T ++ L
Sbjct: 379 GDMESAREMFGVMNNRDVVAWTAMIVGYEQNGRNDEAIDLFRSMITCGPEPNSYTLAAVL 438

Query: 325 CACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENS 384
             CAS+  L +GKQ+H   IR+    ++ V +++I MY++ G     R++FD    ++ +
Sbjct: 439 SVCASLACLDYGKQIHCRAIRSLLERSSSVSNAIITMYARSGSFPWARRMFDQVCWRKET 498

Query: 385 MLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFES 444
           + W +MI AL QHG  E+A+ LF +M+R+ V+PD+IT   +L+AC+H+G V EG  Y++ 
Sbjct: 499 ITWTSMIVALAQHGQGEEAVGLFEEMLRAGVEPDRITYVGVLSACSHAGFVNEGKRYYDQ 558

Query: 445 MTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNID 504
           + ++  I P   H+AC+++LLA+AG   +    + +MP E D+  W +L   CR+H N +
Sbjct: 559 IKNEHQIAPEMSHYACMVDLLARAGLFSEAQEFIRRMPVEPDAIAWGSLLSACRVHKNAE 618

Query: 505 MGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIE 564
           +     ++L+  +P +S  +  ++++YSA G+     ++ +   E+  +KE   SW  I 
Sbjct: 619 LAELAAEKLLSIDPNNSGAYSAIANVYSACGRWSDAARIWKARKEKAVRKETGFSWTHIR 678

Query: 565 NKVHAFSVSDSLHPMRDVLYSVLEQLAGQMGED 597
           +K+H F   D +HP RD +Y+    +A +M E+
Sbjct: 679 SKIHVFGADDVVHPQRDAVYA----MAARMWEE 707



 Score =  232 bits (592), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 159/578 (27%), Positives = 277/578 (47%), Gaps = 76/578 (13%)

Query: 56  AFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFK----CGSDVDARKVF 111
           A +LQ C  + +   G+ +H    +      + +L N+L+S Y +     G   DAR++F
Sbjct: 30  ARLLQLCQTAANPGAGRAIHAR-AVKAGLLASAYLCNNLLSYYGETAGGAGGLRDARRLF 88

Query: 112 DKIPV--KNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEG 169
           D+IP+  +N+F++N++LS +A  G +  AR +F  M ERD VSW  M++G  ++G   E 
Sbjct: 89  DEIPLARRNVFTWNSLLSMFAKSGRLADARGVFAEMPERDAVSWTVMVVGLNRAGRFGEA 148

Query: 170 LKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDA 229
           +K    +     +  +F+   +L+ C   +   + R+VH  V+  G  S V +++S+++ 
Sbjct: 149 IKTLLDMTADGFTPTQFTLTNVLSSCAVTQAGAVGRKVHSFVVKLGLGSCVPVANSVLNM 208

Query: 230 YAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLI 289
           Y KCG+   A  +F+    R V +W  MVS    LG M+ A  LF  MP ++ VSW  +I
Sbjct: 209 YGKCGDAETASTVFERMPVRSVSSWNAMVSLNTHLGRMDLAESLFESMPGRSIVSWNAMI 268

Query: 290 AGYTRNGLGQKALELFTRMM-ILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNF 348
           AGY +NGL  KAL+LF+RM+    + P++ T +S L ACA++ +++ GKQVH +++RT  
Sbjct: 269 AGYNQNGLDAKALKLFSRMLHESSMAPDEFTITSVLSACANLGNVRIGKQVHAYILRTEM 328

Query: 349 RSNTIVMSSLIDMYSKCGCLNDGRQVFDL---TD-------------------------- 379
             N+ V ++LI  Y+K G + + R++ D    TD                          
Sbjct: 329 AYNSQVTNALISTYAKSGSVENARRIMDQSMETDLNVISFTALLEGYVKIGDMESAREMF 388

Query: 380 ---NKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACT------ 430
              N  + + W  MI    Q+G +++AI LF  M+    +P+  TLA +L+ C       
Sbjct: 389 GVMNNRDVVAWTAMIVGYEQNGRNDEAIDLFRSMITCGPEPNSYTLAAVLSVCASLACLD 448

Query: 431 -----HSGLVQEGLTYFESMTHDL-------GIIPNQEH---HAC----------LIELL 465
                H   ++  L    S+++ +       G  P         C          +I  L
Sbjct: 449 YGKQIHCRAIRSLLERSSSVSNAIITMYARSGSFPWARRMFDQVCWRKETITWTSMIVAL 508

Query: 466 AQAGCSDQLMNQLEKM---PYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSA 522
           AQ G  ++ +   E+M     E D   +  +   C   G ++ G++  DQ+ +++ Q + 
Sbjct: 509 AQHGQGEEAVGLFEEMLRAGVEPDRITYVGVLSACSHAGFVNEGKRYYDQIKNEH-QIAP 567

Query: 523 THGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISW 560
                + +   L +  L  + ++ I  R   +  AI+W
Sbjct: 568 EMSHYACMVDLLARAGLFSEAQEFI-RRMPVEPDAIAW 604


>gi|449459160|ref|XP_004147314.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Cucumis sativus]
          Length = 695

 Score =  394 bits (1013), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 199/595 (33%), Positives = 332/595 (55%), Gaps = 37/595 (6%)

Query: 39  SLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMY 98
           S+DLL  R     +E    ++ +C  +  +   KR+  H++    +   +FL N L+ +Y
Sbjct: 10  SVDLLCSRSTA-TSEAYTQLVLECVRTNEINQAKRLQSHMEHHLFQPTDSFLHNQLLHLY 68

Query: 99  FKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMII 158
            K G   DA+ +FDK+  +++FS+N +LS YA  G +++ +  FD M  RD VS+NT I 
Sbjct: 69  AKFGKLRDAQNLFDKMLKRDIFSWNALLSAYAKSGSIQNLKATFDRMPFRDSVSYNTTIA 128

Query: 159 GYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLS 218
           G++ +   +E L+ +K ++R      E++   IL    +L +L+  +Q+HG ++V  FL 
Sbjct: 129 GFSGNSCPQESLELFKRMQREGFEPTEYTIVSILNASAQLSDLRYGKQIHGSIIVRNFLG 188

Query: 219 NVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAK--------------- 263
           NV I +++ D YAKCGE+  AR LFD    +++++W  M+SGYAK               
Sbjct: 189 NVFIWNALTDMYAKCGEIEQARWLFDCLTKKNLVSWNLMISGYAKNGQPEKCIGLLHQMR 248

Query: 264 --------------------LGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALE 303
                                G ++ A ++F+E  EK+ V WT ++ GY +NG  + AL 
Sbjct: 249 LSGHMPDQVTMSTIIAAYCQCGRVDEARRVFSEFKEKDIVCWTAMMVGYAKNGREEDALL 308

Query: 304 LFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYS 363
           LF  M++  I P+ +T SS + +CA + SL HG+ VHG  I     +N +V S+LIDMYS
Sbjct: 309 LFNEMLLEHIEPDSYTLSSVVSSCAKLASLHHGQAVHGKSILAGLNNNLLVSSALIDMYS 368

Query: 364 KCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLA 423
           KCG ++D R VF+L   + N + WN MI    Q+G+D+ A+ LF +M++   KPD +T  
Sbjct: 369 KCGFIDDARSVFNLMPTR-NVVSWNAMIVGCAQNGHDKDALELFENMLQQKFKPDNVTFI 427

Query: 424 VILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPY 483
            IL+AC H   +++G  YF+S+T+  G+ P  +H+AC++ LL + G  +Q +  ++ M +
Sbjct: 428 GILSACLHCNWIEQGQEYFDSITNQHGMTPTLDHYACMVNLLGRTGRIEQAVALIKNMAH 487

Query: 484 EHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKV 543
           + D  +W+ L  +C   G+I         L + +P  +  + +LS++Y+++G+ + V  V
Sbjct: 488 DPDFLIWSTLLSICSTKGDIVNAEVAARHLFELDPTIAVPYIMLSNMYASMGRWKDVASV 547

Query: 544 RQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQMGEDA 598
           R L+  +  KK    SWIEI+N+VH F+  D  HP  + +Y  L  L G++ E+ 
Sbjct: 548 RNLMKSKNVKKFAGFSWIEIDNEVHRFTSEDRTHPESEDIYEKLNMLIGKLQEEG 602



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 70/277 (25%), Positives = 115/277 (41%), Gaps = 24/277 (8%)

Query: 19  CLIQSFLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHL 78
           C     +     G+  +A+   + +    I   + TL+ ++  CA+  SL  G+ VH   
Sbjct: 289 CWTAMMVGYAKNGREEDALLLFNEMLLEHIEPDSYTLSSVVSSCAKLASLHHGQAVHGKS 348

Query: 79  KLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHA 138
            L         +S+ LI MY KCG   DAR VF+ +P +N+ S+N M+ G A  G  K A
Sbjct: 349 ILAGLNN-NLLVSSALIDMYSKCGFIDDARSVFNLMPTRNVVSWNAMIVGCAQNGHDKDA 407

Query: 139 RNLFDNMAERDVVSWNTMIIGYAKS----GAVEEGLKFY----------KVLRRFSISCN 184
             LF+NM ++     N   IG   +      +E+G +++            L  ++   N
Sbjct: 408 LELFENMLQQKFKPDNVTFIGILSACLHCNWIEQGQEYFDSITNQHGMTPTLDHYACMVN 467

Query: 185 EFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFD 244
                G +   V L  +K        ++ +  LS       IV+A         AR LF 
Sbjct: 468 LLGRTGRIEQAVAL--IKNMAHDPDFLIWSTLLSICSTKGDIVNAEVA------ARHLF- 518

Query: 245 ETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKN 281
           E D    + +  + + YA +G  +  + + N M  KN
Sbjct: 519 ELDPTIAVPYIMLSNMYASMGRWKDVASVRNLMKSKN 555


>gi|414873128|tpg|DAA51685.1| TPA: hypothetical protein ZEAMMB73_445170 [Zea mays]
          Length = 987

 Score =  393 bits (1010), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 198/580 (34%), Positives = 337/580 (58%), Gaps = 14/580 (2%)

Query: 24  FLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVH---LHLKL 80
            + L   G+  +A+ +   +   G      TL  +L  CA  ++  +G++VH   + L L
Sbjct: 319 IVGLNRSGRFWDAVKTFLDMVSEGFAPSQFTLTNVLSSCAAMEACGVGRKVHPFVVKLGL 378

Query: 81  TQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARN 140
           +        ++N ++ MY KCG    AR VF+++ V+++ S+N M+S Y + G M+ A +
Sbjct: 379 SS----CVPVANSVLYMYGKCGDAETARAVFERMQVRSVSSWNVMVSLYTHQGRMELAVS 434

Query: 141 LFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFY-KVLRRFSISCNEFSFAGILTICVKLE 199
           +F+NM ER +VSWNT+I GY ++G     LKF+ ++L   S+  + F+   +L+ C  L 
Sbjct: 435 MFENMVERSIVSWNTIIAGYNQNGLDGMALKFFSRMLSASSMEPDAFTVTSVLSACANLR 494

Query: 200 ELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARD--VLTWTTM 257
            LK+ +Q+H  +L TG   +  I ++++  YAK G +  ARR+ D+    D  V+++T +
Sbjct: 495 MLKMGKQMHSYILRTGMPCSSQIMNALISTYAKSGSVETARRIMDQAVVADLNVISFTAL 554

Query: 258 VSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQ 317
           + GY KLGD + A ++F+ M  ++ ++WT +I GY +NG   +A+ELF  M+++   PN 
Sbjct: 555 LEGYVKLGDTKQAREIFDIMNNRDVIAWTAMIVGYHQNGQNDEAMELFRSMILIGPEPNS 614

Query: 318 HTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDL 377
           HT ++ L ACAS+  L +GKQ+H   IR+    +  V +++I +Y++ G +   R+VFD 
Sbjct: 615 HTLAAVLSACASLAYLDYGKQIHCKAIRSLQEQSVSVSNAIITVYARSGSVPLARRVFDQ 674

Query: 378 TDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQE 437
              ++ ++ W +MI A+ QHG  EQA+ LF +MVR  VKPD IT   +L+AC H+G V +
Sbjct: 675 ICWRKETITWTSMIVAMAQHGLGEQAVVLFEEMVRVGVKPDHITYVGVLSACAHAGFVDK 734

Query: 438 GLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVC 497
           G  Y+E M ++ GI+P   H+AC+++L A+AG   +    +++MP   D+ +W +L   C
Sbjct: 735 GKRYYEQMQNEHGIVPQMSHYACMVDLHARAGLLTEAHEFIQRMPVAPDTVVWGSLLAAC 794

Query: 498 RIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQA 557
           R+  N D+      +L+  +P +S  +  L+++YSA G+     ++ +L  ++  KKE  
Sbjct: 795 RVRKNADLAELAAGKLLSIDPHNSGAYSALANVYSACGRWNDAARIWKLRKDKGVKKETG 854

Query: 558 ISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQMGED 597
            SW  +  KVH F   D LHP RD +Y    + A +M E+
Sbjct: 855 FSWTHVRGKVHVFGADDVLHPQRDSIY----RKAAEMWEE 890



 Score =  226 bits (577), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 131/415 (31%), Positives = 218/415 (52%), Gaps = 42/415 (10%)

Query: 56  AFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDV----DARKVF 111
           A +LQ C  + +   G+ +H H  +      +T+L N+L++ Y   G       +AR +F
Sbjct: 213 ARLLQLCRTAVNPSAGRAIHAH-AVKAGLLVSTYLCNNLLAYYASVGVSRGCFREARCLF 271

Query: 112 DKIPV--KNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEG 169
           D IP   +N F++N++LS YA  G +  A  +F  M +RD VSW  MI+G  +SG   + 
Sbjct: 272 DDIPYARRNAFTWNSLLSLYAKSGRLPDAHVVFAEMPDRDAVSWTIMIVGLNRSGRFWDA 331

Query: 170 LKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDA 229
           +K +  +     + ++F+   +L+ C  +E   + R+VH  V+  G  S V +++S++  
Sbjct: 332 VKTFLDMVSEGFAPSQFTLTNVLSSCAAMEACGVGRKVHPFVVKLGLSSCVPVANSVLYM 391

Query: 230 YAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLI 289
           Y KCG+   AR +F+    R V +W  MVS Y   G ME A  +F  M E++ VSW T+I
Sbjct: 392 YGKCGDAETARAVFERMQVRSVSSWNVMVSLYTHQGRMELAVSMFENMVERSIVSWNTII 451

Query: 290 AGYTRNGLGQKALELFTRMM-ILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNF 348
           AGY +NGL   AL+ F+RM+    + P+  T +S L ACA++  LK GKQ+H +++RT  
Sbjct: 452 AGYNQNGLDGMALKFFSRMLSASSMEPDAFTVTSVLSACANLRMLKMGKQMHSYILRTGM 511

Query: 349 RSNTIVMSSLIDMYSKCGCL---------------------------------NDGRQVF 375
             ++ +M++LI  Y+K G +                                    R++F
Sbjct: 512 PCSSQIMNALISTYAKSGSVETARRIMDQAVVADLNVISFTALLEGYVKLGDTKQAREIF 571

Query: 376 DLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACT 430
           D+ +N++  + W  MI    Q+G +++A+ LF  M+    +P+  TLA +L+AC 
Sbjct: 572 DIMNNRD-VIAWTAMIVGYHQNGQNDEAMELFRSMILIGPEPNSHTLAAVLSACA 625



 Score =  140 bits (352), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 100/387 (25%), Positives = 181/387 (46%), Gaps = 30/387 (7%)

Query: 188 FAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGE----LSDARRLF 243
           +A +L +C         R +H   +  G L +  + ++++  YA  G       +AR LF
Sbjct: 212 YARLLQLCRTAVNPSAGRAIHAHAVKAGLLVSTYLCNNLLAYYASVGVSRGCFREARCLF 271

Query: 244 DETD--ARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKA 301
           D+     R+  TW +++S YAK G +  A  +F EMP+++ VSWT +I G  R+G    A
Sbjct: 272 DDIPYARRNAFTWNSLLSLYAKSGRLPDAHVVFAEMPDRDAVSWTIMIVGLNRSGRFWDA 331

Query: 302 LELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDM 361
           ++ F  M+     P+Q T ++ L +CA++ +   G++VH F+++    S   V +S++ M
Sbjct: 332 VKTFLDMVSEGFAPSQFTLTNVLSSCAAMEACGVGRKVHPFVVKLGLSSCVPVANSVLYM 391

Query: 362 YSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKIT 421
           Y KCG     R VF+    +  S  WN M+S  T  G  E A+ +F +MV  S+    ++
Sbjct: 392 YGKCGDAETARAVFERMQVRSVSS-WNVMVSLYTHQGRMELAVSMFENMVERSI----VS 446

Query: 422 LAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKM 481
              I+     +GL    L +F  M     + P+      ++     + C++  M ++ K 
Sbjct: 447 WNTIIAGYNQNGLDGMALKFFSRMLSASSMEPDAFTVTSVL-----SACANLRMLKMGKQ 501

Query: 482 PYEH--------DSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSA 533
            + +         S + NAL       G+++  R+++DQ +  +    +   LL   Y  
Sbjct: 502 MHSYILRTGMPCSSQIMNALISTYAKSGSVETARRIMDQAVVADLNVISFTALLEG-YVK 560

Query: 534 LGKGRLVEKVRQLINERQFKKEQAISW 560
           LG  +   ++  ++N R       I+W
Sbjct: 561 LGDTKQAREIFDIMNNR-----DVIAW 582


>gi|15227144|ref|NP_179798.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206010|sp|Q9SHZ8.1|PP168_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g22070
 gi|4587589|gb|AAD25817.1| hypothetical protein [Arabidopsis thaliana]
 gi|330252165|gb|AEC07259.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 786

 Score =  392 bits (1008), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 200/564 (35%), Positives = 340/564 (60%), Gaps = 6/564 (1%)

Query: 31  GQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVH-LHLKLTQRKTPTTF 89
           GQ  +AI  +  + + GI     TL  +L   A ++ ++ GK+VH   +KL  R   +  
Sbjct: 125 GQYHKAIRVMGDMVKEGIEPTQFTLTNVLASVAATRCMETGKKVHSFIVKLGLRGNVS-- 182

Query: 90  LSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERD 149
           +SN L++MY KCG  + A+ VFD++ V+++ S+N M++ +  +G M  A   F+ MAERD
Sbjct: 183 VSNSLLNMYAKCGDPMMAKFVFDRMVVRDISSWNAMIALHMQVGQMDLAMAQFEQMAERD 242

Query: 150 VVSWNTMIIGYAKSGAVEEGLK-FYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVH 208
           +V+WN+MI G+ + G     L  F K+LR   +S + F+ A +L+ C  LE+L + +Q+H
Sbjct: 243 IVTWNSMISGFNQRGYDLRALDIFSKMLRDSLLSPDRFTLASVLSACANLEKLCIGKQIH 302

Query: 209 GQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARD--VLTWTTMVSGYAKLGD 266
             ++ TGF  + ++ ++++  Y++CG +  ARRL ++   +D  +  +T ++ GY KLGD
Sbjct: 303 SHIVTTGFDISGIVLNALISMYSRCGGVETARRLIEQRGTKDLKIEGFTALLDGYIKLGD 362

Query: 267 MESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCA 326
           M  A  +F  + +++ V+WT +I GY ++G   +A+ LF  M+    RPN +T ++ L  
Sbjct: 363 MNQAKNIFVSLKDRDVVAWTAMIVGYEQHGSYGEAINLFRSMVGGGQRPNSYTLAAMLSV 422

Query: 327 CASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSML 386
            +S+ SL HGKQ+HG  +++    +  V ++LI MY+K G +    + FDL   + +++ 
Sbjct: 423 ASSLASLSHGKQIHGSAVKSGEIYSVSVSNALITMYAKAGNITSASRAFDLIRCERDTVS 482

Query: 387 WNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMT 446
           W +MI AL QHG+ E+A+ LF  M+   ++PD IT   + +ACTH+GLV +G  YF+ M 
Sbjct: 483 WTSMIIALAQHGHAEEALELFETMLMEGLRPDHITYVGVFSACTHAGLVNQGRQYFDMMK 542

Query: 447 HDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMG 506
               IIP   H+AC+++L  +AG   +    +EKMP E D   W +L   CR+H NID+G
Sbjct: 543 DVDKIIPTLSHYACMVDLFGRAGLLQEAQEFIEKMPIEPDVVTWGSLLSACRVHKNIDLG 602

Query: 507 RKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENK 566
           +   ++L+   P++S  +  L+++YSA GK     K+R+ + + + KKEQ  SWIE+++K
Sbjct: 603 KVAAERLLLLEPENSGAYSALANLYSACGKWEEAAKIRKSMKDGRVKKEQGFSWIEVKHK 662

Query: 567 VHAFSVSDSLHPMRDVLYSVLEQL 590
           VH F V D  HP ++ +Y  ++++
Sbjct: 663 VHVFGVEDGTHPEKNEIYMTMKKI 686



 Score =  220 bits (561), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 135/497 (27%), Positives = 246/497 (49%), Gaps = 40/497 (8%)

Query: 87  TTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMA 146
           + +L N+L+++Y K G  + ARK+FD++P++  FS+N +LS Y+  G M      FD + 
Sbjct: 48  SVYLMNNLMNVYSKTGYALHARKLFDEMPLRTAFSWNTVLSAYSKRGDMDSTCEFFDQLP 107

Query: 147 ERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQ 206
           +RD VSW TMI+GY   G   + ++    + +  I   +F+   +L        ++  ++
Sbjct: 108 QRDSVSWTTMIVGYKNIGQYHKAIRVMGDMVKEGIEPTQFTLTNVLASVAATRCMETGKK 167

Query: 207 VHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGD 266
           VH  ++  G   NV +S+S+++ YAKCG+   A+ +FD    RD+ +W  M++ + ++G 
Sbjct: 168 VHSFIVKLGLRGNVSVSNSLLNMYAKCGDPMMAKFVFDRMVVRDISSWNAMIALHMQVGQ 227

Query: 267 MESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILR---IRPNQHTFSSC 323
           M+ A   F +M E++ V+W ++I+G+ + G   +AL++F++M  LR   + P++ T +S 
Sbjct: 228 MDLAMAQFEQMAERDIVTWNSMISGFNQRGYDLRALDIFSKM--LRDSLLSPDRFTLASV 285

Query: 324 LCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKE- 382
           L ACA++  L  GKQ+H  ++ T F  + IV+++LI MYS+CG +   R++ +    K+ 
Sbjct: 286 LSACANLEKLCIGKQIHSHIVTTGFDISGIVLNALISMYSRCGGVETARRLIEQRGTKDL 345

Query: 383 -------------------------------NSMLWNTMISALTQHGYDEQAIRLFHDMV 411
                                          + + W  MI    QHG   +AI LF  MV
Sbjct: 346 KIEGFTALLDGYIKLGDMNQAKNIFVSLKDRDVVAWTAMIVGYEQHGSYGEAINLFRSMV 405

Query: 412 RSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCS 471
               +P+  TLA +L+  +    +  G     S     G I +      LI + A+AG  
Sbjct: 406 GGGQRPNSYTLAAMLSVASSLASLSHGKQIHGSAVKS-GEIYSVSVSNALITMYAKAGNI 464

Query: 472 DQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIY 531
                  + +  E D+  W ++      HG+ +   ++ + ++ +  +    H     ++
Sbjct: 465 TSASRAFDLIRCERDTVSWTSMIIALAQHGHAEEALELFETMLMEGLRPD--HITYVGVF 522

Query: 532 SALGKGRLVEKVRQLIN 548
           SA     LV + RQ  +
Sbjct: 523 SACTHAGLVNQGRQYFD 539



 Score =  164 bits (414), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 90/285 (31%), Positives = 154/285 (54%), Gaps = 39/285 (13%)

Query: 186 FSFAGILTICVKLEELKLTRQ--------VHGQVLVTGFLSNVVISSSIVDAYAKCGELS 237
            S + +L +C  L +  + +         VH +V+ +G + +V + +++++ Y+K G   
Sbjct: 7   LSLSTLLELCTNLLQKSVNKSNGRFTAQLVHCRVIKSGLMFSVYLMNNLMNVYSKTGYAL 66

Query: 238 DARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGL 297
            AR+LFDE   R   +W T++S Y+K GDM+S  + F+++P+++ VSWTT+I GY   G 
Sbjct: 67  HARKLFDEMPLRTAFSWNTVLSAYSKRGDMDSTCEFFDQLPQRDSVSWTTMIVGYKNIGQ 126

Query: 298 GQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSS 357
             KA+ +   M+   I P Q T ++ L + A+   ++ GK+VH F+++   R N  V +S
Sbjct: 127 YHKAIRVMGDMVKEGIEPTQFTLTNVLASVAATRCMETGKKVHSFIVKLGLRGNVSVSNS 186

Query: 358 LIDMYSKCGCLNDGRQVFDLTDNKE----NSML--------------------------W 387
           L++MY+KCG     + VFD    ++    N+M+                          W
Sbjct: 187 LLNMYAKCGDPMMAKFVFDRMVVRDISSWNAMIALHMQVGQMDLAMAQFEQMAERDIVTW 246

Query: 388 NTMISALTQHGYDEQAIRLFHDMVRSS-VKPDKITLAVILNACTH 431
           N+MIS   Q GYD +A+ +F  M+R S + PD+ TLA +L+AC +
Sbjct: 247 NSMISGFNQRGYDLRALDIFSKMLRDSLLSPDRFTLASVLSACAN 291


>gi|414887370|tpg|DAA63384.1| TPA: hypothetical protein ZEAMMB73_689576 [Zea mays]
          Length = 802

 Score =  392 bits (1008), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 203/582 (34%), Positives = 323/582 (55%), Gaps = 24/582 (4%)

Query: 21  IQSFLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKL 80
           +  F SL++ G L     S   L   G  LP  ++    + CA+           LH  +
Sbjct: 141 VAVFRSLLASGSLRPDDYSFTALLSAGGHLPNISV----RHCAQ-----------LHCSV 185

Query: 81  TQRKTPTTF-LSNHLISMYFKCGSDV---DARKVFDKIPVKNLFSYNNMLSGYANLGMMK 136
            +        + N L+++Y KC S     DARKV D++P K+  ++  M+ GY   G + 
Sbjct: 186 LKSGAGGALSVCNALVALYMKCESPEATRDARKVLDEMPNKDDLTWTTMVVGYVRRGDVG 245

Query: 137 HARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICV 196
            AR++F+ +  +  V WN MI GY  SG   E  + ++ +    +  +EF+F  +L+ C 
Sbjct: 246 AARSVFEEVDGKFDVVWNAMISGYVHSGMAVEAFELFRRMVLERVPLDEFTFTSVLSACA 305

Query: 197 KLEELKLTRQVHGQV--LVTGFLSNVV--ISSSIVDAYAKCGELSDARRLFDETDARDVL 252
            +      + VHGQ+  L   F+      +++++V  Y+KCG ++ ARR+FD    +DV+
Sbjct: 306 NVGLFAHGKSVHGQIIRLQPNFVPEAALPVNNALVTFYSKCGNIAVARRIFDNMTLKDVV 365

Query: 253 TWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILR 312
           +W T++SGY +   ++ A ++F EMP KN +SW  +++GY   G  + AL+LF +M    
Sbjct: 366 SWNTILSGYVESSCLDKAVEVFEEMPYKNELSWMVMVSGYVHGGFAEDALKLFNKMRSEN 425

Query: 313 IRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGR 372
           ++P  +T++  + AC  + +LKHGKQ+HG +++  F  +    ++LI MY++CG + +  
Sbjct: 426 VKPCDYTYAGAIAACGELGALKHGKQLHGHIVQLGFEGSNSAGNALITMYARCGAVKEAH 485

Query: 373 QVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHS 432
            +F +  N + S+ WN MISAL QHG+  +A+ LF  MV   + PD+I+   +L AC HS
Sbjct: 486 LMFLVMPNID-SVSWNAMISALGQHGHGREALELFDRMVAEGIYPDRISFLTVLTACNHS 544

Query: 433 GLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNA 492
           GLV EG  YFESM  D GIIP ++H+  LI+LL +AG   +  + ++ MP+E    +W A
Sbjct: 545 GLVDEGFRYFESMKRDFGIIPGEDHYTRLIDLLGRAGRIGEARDLIKTMPFEPTPSIWEA 604

Query: 493 LHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQF 552
           +   CR  G++++G    DQL    PQ   T+ LLS+ YSA G      +VR+L+ +R  
Sbjct: 605 ILSGCRTSGDMELGAHAADQLFKMTPQHDGTYILLSNTYSAAGCWVDAARVRKLMRDRGV 664

Query: 553 KKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQM 594
           KKE   SWIE  NKVH F V D+ HP    +Y  LE +  +M
Sbjct: 665 KKEPGCSWIEAGNKVHVFLVGDTKHPEAHEVYKFLEMVGAKM 706


>gi|242032827|ref|XP_002463808.1| hypothetical protein SORBIDRAFT_01g006560 [Sorghum bicolor]
 gi|241917662|gb|EER90806.1| hypothetical protein SORBIDRAFT_01g006560 [Sorghum bicolor]
          Length = 803

 Score =  391 bits (1005), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 192/557 (34%), Positives = 331/557 (59%), Gaps = 6/557 (1%)

Query: 31  GQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVH-LHLKLTQRKTPTTF 89
           G+  +A+ +   +   G+      L  +L  CA +++  +G++VH   +KL    +    
Sbjct: 142 GRFWDAVKTFLDMVGEGLAPSQFMLTNVLSSCAATEARGIGRKVHSFVIKLGL--SSCVP 199

Query: 90  LSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERD 149
           ++N ++ MY KCG    AR VF+++ V++  S+N M+S Y + G M  A ++F+NM ER 
Sbjct: 200 VANSVLYMYGKCGDAETARAVFERMKVRSESSWNAMVSLYTHQGRMDLALSMFENMEERS 259

Query: 150 VVSWNTMIIGYAKSGAVEEGLKFY-KVLRRFSISCNEFSFAGILTICVKLEELKLTRQVH 208
           +VSWN +I GY ++G  +  LKF+ ++L   S+  +EF+   +L+ C  L  LK+ +Q+H
Sbjct: 260 IVSWNAIIAGYNQNGLDDMALKFFSRMLTASSMEPDEFTVTSVLSACANLRMLKMGKQMH 319

Query: 209 GQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARD--VLTWTTMVSGYAKLGD 266
             +L TG   +  I ++++  YAK G +  ARR+ D+    D  V+++T ++ GY KLGD
Sbjct: 320 SYILRTGMPYSSQIMNALISTYAKSGSVETARRIMDKAVVADLNVISFTALLEGYVKLGD 379

Query: 267 MESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCA 326
            + A ++F+ M  ++ ++WT +I GY +NG   +A+ELF  M+     PN HT ++ L A
Sbjct: 380 TKQAREVFDVMNNRDVIAWTAMIVGYEQNGQNDEAMELFRSMIRSGPEPNSHTLAAVLSA 439

Query: 327 CASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSML 386
           CAS+  L +GKQ+H   IR+    +  V +++I +Y++ G +   R+VFD    ++ ++ 
Sbjct: 440 CASLAYLGYGKQIHCRAIRSLQEQSVSVSNAIITVYARSGSVPLARRVFDQICWRKETVT 499

Query: 387 WNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMT 446
           W +MI AL QHG  EQAI LF +M+R  VKPD++T   + +ACTH+G + +G  Y+E M 
Sbjct: 500 WTSMIVALAQHGLGEQAIVLFEEMLRVGVKPDRVTYIGVFSACTHAGFIDKGKRYYEQML 559

Query: 447 HDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMG 506
           ++ GI+P   H+AC+++LLA+AG   +    +++MP   D+ +W +L   CR+  N D+ 
Sbjct: 560 NEHGIVPEMSHYACMVDLLARAGLLTEAHEFIQRMPVAPDTVVWGSLLAACRVRKNADLA 619

Query: 507 RKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENK 566
               ++L+  +P +S  +  L+++YSA G+     ++ +L  ++  KKE   SW  +++K
Sbjct: 620 ELAAEKLLSIDPDNSGAYSALANVYSACGRWNDAARIWKLRKDKAVKKETGFSWTHVQSK 679

Query: 567 VHAFSVSDSLHPMRDVL 583
           VH F   D LHP RD +
Sbjct: 680 VHVFGADDVLHPQRDAI 696



 Score =  229 bits (584), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 141/491 (28%), Positives = 243/491 (49%), Gaps = 51/491 (10%)

Query: 55  LAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDV----DARKV 110
            A +LQ    + +   G+ +H H  +      + +L N+L+S Y + G       +AR++
Sbjct: 28  FARLLQLSQTAVNPSAGRAIHAH-AVKAGLLVSAYLCNNLLSYYARAGVGRGCFHEARRL 86

Query: 111 FDKIPV--KNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEE 168
           FD IP   +N F++N++LS YA  G +  AR +F  M ERD VSW  M++G  ++G   +
Sbjct: 87  FDDIPYARRNAFTWNSLLSMYAKSGRLADARVVFAQMPERDAVSWTVMVVGLNRAGRFWD 146

Query: 169 GLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVD 228
            +K +  +    ++ ++F    +L+ C   E   + R+VH  V+  G  S V +++S++ 
Sbjct: 147 AVKTFLDMVGEGLAPSQFMLTNVLSSCAATEARGIGRKVHSFVIKLGLSSCVPVANSVLY 206

Query: 229 AYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTL 288
            Y KCG+   AR +F+    R   +W  MVS Y   G M+ A  +F  M E++ VSW  +
Sbjct: 207 MYGKCGDAETARAVFERMKVRSESSWNAMVSLYTHQGRMDLALSMFENMEERSIVSWNAI 266

Query: 289 IAGYTRNGLGQKALELFTRMMIL-RIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTN 347
           IAGY +NGL   AL+ F+RM+    + P++ T +S L ACA++  LK GKQ+H +++RT 
Sbjct: 267 IAGYNQNGLDDMALKFFSRMLTASSMEPDEFTVTSVLSACANLRMLKMGKQMHSYILRTG 326

Query: 348 FRSNTIVMSSLIDMYSKCGCL---------------------------------NDGRQV 374
              ++ +M++LI  Y+K G +                                    R+V
Sbjct: 327 MPYSSQIMNALISTYAKSGSVETARRIMDKAVVADLNVISFTALLEGYVKLGDTKQAREV 386

Query: 375 FDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGL 434
           FD+ +N++  + W  MI    Q+G +++A+ LF  M+RS  +P+  TLA +L+AC     
Sbjct: 387 FDVMNNRD-VIAWTAMIVGYEQNGQNDEAMELFRSMIRSGPEPNSHTLAAVLSACASLAY 445

Query: 435 VQEGLTYFESMTHDLGIIPNQEHHA----CLIELLAQAGCSDQLMNQLEKMPYEHDSYLW 490
           +  G        H   I   QE        +I + A++G         +++ +  ++  W
Sbjct: 446 LGYG-----KQIHCRAIRSLQEQSVSVSNAIITVYARSGSVPLARRVFDQICWRKETVTW 500

Query: 491 NALHGVCRIHG 501
            ++      HG
Sbjct: 501 TSMIVALAQHG 511


>gi|357113684|ref|XP_003558631.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Brachypodium distachyon]
          Length = 802

 Score =  391 bits (1005), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 199/573 (34%), Positives = 336/573 (58%), Gaps = 14/573 (2%)

Query: 31  GQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVH---LHLKLTQRKTPT 87
           G+  EAI     +   G+     TL  +L  CA +++  +G++VH   + L L+      
Sbjct: 141 GRFGEAIKMFLDMVTDGLSPTQFTLTNVLSSCAATEARGVGRKVHSFVVKLGLSS----C 196

Query: 88  TFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAE 147
             ++N +++MY KCG    AR VF+++P +++ S+N M+S  A+LG M  A +LF+NM +
Sbjct: 197 VPVANSVLNMYGKCGDAETARAVFERMPERSVSSWNAMVSLDAHLGRMDLALSLFENMPD 256

Query: 148 RDVVSWNTMIIGYAKSGAVEEGLKFY-KVLRRFSISCNEFSFAGILTICVKLEELKLTRQ 206
           R +VSWN +I GY ++G   + L F+ ++L   +++ +EF+   +L+ C  L  + + +Q
Sbjct: 257 RTIVSWNAVIAGYNQNGLNAKALWFFSRMLSYSTMAPDEFTITSVLSACANLGMVSIGKQ 316

Query: 207 VHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARD--VLTWTTMVSGYAKL 264
           VH  +L +       ++++++  YAK G + +AR +  +    D  V+++T ++ GY KL
Sbjct: 317 VHAYILRSRMPYIGQVTNALISMYAKSGSVENARGVMQQAVMADLNVISFTALLEGYVKL 376

Query: 265 GDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCL 324
           GDM+ A ++F+ M  ++ V+WT +I GY +NG   +A+ELF  M+     PN +T ++ L
Sbjct: 377 GDMKHAREMFDVMSNRDVVAWTAMIVGYEQNGHNDEAMELFRLMIRSGPEPNSYTVAAVL 436

Query: 325 CACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENS 384
             CAS+  L++GKQ+H   IR+    ++ V +S++ MY++ G L   R+VFD    ++ +
Sbjct: 437 SVCASLACLEYGKQIHCKAIRSLQEQSSSVSNSIVTMYARSGSLPWARRVFDRVHWRKET 496

Query: 385 MLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFES 444
           + W +MI AL QHG  E A+ LF +M+R  VKPD+IT   +L+ACTH G V EG  YF+ 
Sbjct: 497 VTWTSMIVALAQHGLGEDAVGLFEEMLRVGVKPDRITFVGVLSACTHVGFVDEGKRYFQQ 556

Query: 445 MTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNID 504
           +    GI+P   H+AC+++LLA+AG   +    +++MP E D+  W +L   CR+H N D
Sbjct: 557 LQDKHGIVPEMSHYACMVDLLARAGLFSEAQEFIQQMPVEPDAIAWGSLLSACRVHKNAD 616

Query: 505 MGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIE 564
           +     ++L+  +P +S  +  LS++YSA G+     K+ +   ++  KKE   SW  I 
Sbjct: 617 LAELAAEKLLSIDPGNSGAYSALSNVYSACGRWNDAAKIWKRRKDKSVKKETGFSWTHIG 676

Query: 565 NKVHAFSVSDSLHPMRDVLYSVLEQLAGQMGED 597
           N+VH F   D LHP RD +Y    + A +M +D
Sbjct: 677 NRVHVFGADDVLHPQRDTVY----RTAAKMWDD 705



 Score =  232 bits (592), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 142/491 (28%), Positives = 247/491 (50%), Gaps = 52/491 (10%)

Query: 56  AFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDV-----DARKV 110
           A +LQ+C  + +   G+ +H    +      + +L N+L+S Y    +       +AR++
Sbjct: 27  ARLLQRCQTAANPGAGRAIHAR-AVKAGLLASAYLCNNLLSYYAGPAAGGGGGFREARRL 85

Query: 111 FDKIPV--KNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEE 168
           FD+IP   +N+F++N++LS YA  G +  AR +F  M ERD VSW  M++G  + G   E
Sbjct: 86  FDEIPAAQRNVFTWNSLLSLYAKSGRLADARAVFAEMPERDPVSWTVMVVGLNRVGRFGE 145

Query: 169 GLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVD 228
            +K +  +    +S  +F+   +L+ C   E   + R+VH  V+  G  S V +++S+++
Sbjct: 146 AIKMFLDMVTDGLSPTQFTLTNVLSSCAATEARGVGRKVHSFVVKLGLSSCVPVANSVLN 205

Query: 229 AYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTL 288
            Y KCG+   AR +F+    R V +W  MVS  A LG M+ A  LF  MP++  VSW  +
Sbjct: 206 MYGKCGDAETARAVFERMPERSVSSWNAMVSLDAHLGRMDLALSLFENMPDRTIVSWNAV 265

Query: 289 IAGYTRNGLGQKALELFTRMMILR-IRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRT- 346
           IAGY +NGL  KAL  F+RM+    + P++ T +S L ACA++  +  GKQVH +++R+ 
Sbjct: 266 IAGYNQNGLNAKALWFFSRMLSYSTMAPDEFTITSVLSACANLGMVSIGKQVHAYILRSR 325

Query: 347 ----------------------NFRS----------NTIVMSSLIDMYSKCGCLNDGRQV 374
                                 N R           N I  ++L++ Y K G +   R++
Sbjct: 326 MPYIGQVTNALISMYAKSGSVENARGVMQQAVMADLNVISFTALLEGYVKLGDMKHAREM 385

Query: 375 FDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGL 434
           FD+  N++  + W  MI    Q+G++++A+ LF  M+RS  +P+  T+A +L+ C     
Sbjct: 386 FDVMSNRD-VVAWTAMIVGYEQNGHNDEAMELFRLMIRSGPEPNSYTVAAVLSVCASLAC 444

Query: 435 VQEGLTYFESMTHDLGIIPNQEHHA----CLIELLAQAGCSDQLMNQLEKMPYEHDSYLW 490
           ++ G        H   I   QE  +     ++ + A++G         +++ +  ++  W
Sbjct: 445 LEYG-----KQIHCKAIRSLQEQSSSVSNSIVTMYARSGSLPWARRVFDRVHWRKETVTW 499

Query: 491 NALHGVCRIHG 501
            ++      HG
Sbjct: 500 TSMIVALAQHG 510


>gi|449520543|ref|XP_004167293.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At1g68930-like [Cucumis
           sativus]
          Length = 695

 Score =  390 bits (1003), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 198/595 (33%), Positives = 331/595 (55%), Gaps = 37/595 (6%)

Query: 39  SLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMY 98
           S+DLL  R     +E    ++ +C  +  +   KR+  H++    +   +FL N L+ +Y
Sbjct: 10  SVDLLCSRSTA-TSEAYTQLVLECVRTNEINQAKRLQSHMEHHLFQPTDSFLHNQLLHLY 68

Query: 99  FKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMII 158
            K G   DA+ +FDK+  ++ FS+N +LS YA  G +++ +  FD M  RD VS+NT I 
Sbjct: 69  AKFGKLRDAQNLFDKMLKRDXFSWNALLSAYAKSGSIQNLKATFDRMPFRDSVSYNTTIA 128

Query: 159 GYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLS 218
           G++ +   +E L+ +K ++R      E++   IL    +L +L+  +Q+HG ++V  FL 
Sbjct: 129 GFSGNSCPQESLELFKRMQREGFEPTEYTIVSILNASAQLLDLRYGKQIHGSIIVRNFLG 188

Query: 219 NVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAK--------------- 263
           NV I +++ D YAKCGE+  AR LFD    +++++W  M+SGYAK               
Sbjct: 189 NVFIWNALTDMYAKCGEIEQARWLFDCLTKKNLVSWNLMISGYAKNGQPEKCIGLLHQMR 248

Query: 264 --------------------LGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALE 303
                                G ++ A ++F+E  EK+ V WT ++ GY +NG  + AL 
Sbjct: 249 LSGHMPDQVTMSTIIAAYCQCGRVDEARRVFSEFKEKDIVCWTAMMVGYAKNGREEDALL 308

Query: 304 LFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYS 363
           LF  M++  I P+ +T SS + +CA + SL HG+ VHG  I     +N +V S+LIDMYS
Sbjct: 309 LFNEMLLEHIEPDSYTLSSVVSSCAKLASLHHGQAVHGKSILAGLNNNLLVSSALIDMYS 368

Query: 364 KCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLA 423
           KCG ++D R VF+L   + N + WN MI    Q+G+D+ A+ LF +M++   KPD +T  
Sbjct: 369 KCGFIDDARSVFNLMPTR-NVVSWNAMIVGCAQNGHDKDALELFENMLQQKFKPDNVTFI 427

Query: 424 VILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPY 483
            IL+AC H   +++G  YF+S+++  G+ P  +H+AC++ LL + G  +Q +  ++ M +
Sbjct: 428 GILSACLHCNWIEQGQEYFDSISNQHGMTPTLDHYACMVNLLGRTGRIEQAVALIKNMAH 487

Query: 484 EHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKV 543
           + D  +W+ L  +C   G+I         L + +P  +  + +LS++Y+++G+ + V  V
Sbjct: 488 DPDFLIWSTLLSICSTKGDIVNAEVAARHLFELDPTIAVPYIMLSNMYASMGRWKDVASV 547

Query: 544 RQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQMGEDA 598
           R L+  +  KK    SWIEI+N+VH F+  D  HP  + +Y  L  L G++ E+ 
Sbjct: 548 RNLMKSKNVKKFAGFSWIEIDNEVHRFTSEDRTHPESEDIYEKLNMLIGKLQEEG 602



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 70/277 (25%), Positives = 115/277 (41%), Gaps = 24/277 (8%)

Query: 19  CLIQSFLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHL 78
           C     +     G+  +A+   + +    I   + TL+ ++  CA+  SL  G+ VH   
Sbjct: 289 CWTAMMVGYAKNGREEDALLLFNEMLLEHIEPDSYTLSSVVSSCAKLASLHHGQAVHGKS 348

Query: 79  KLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHA 138
            L         +S+ LI MY KCG   DAR VF+ +P +N+ S+N M+ G A  G  K A
Sbjct: 349 ILAGLNN-NLLVSSALIDMYSKCGFIDDARSVFNLMPTRNVVSWNAMIVGCAQNGHDKDA 407

Query: 139 RNLFDNMAERDVVSWNTMIIGYAKS----GAVEEGLKFY----------KVLRRFSISCN 184
             LF+NM ++     N   IG   +      +E+G +++            L  ++   N
Sbjct: 408 LELFENMLQQKFKPDNVTFIGILSACLHCNWIEQGQEYFDSISNQHGMTPTLDHYACMVN 467

Query: 185 EFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFD 244
                G +   V L  +K        ++ +  LS       IV+A         AR LF 
Sbjct: 468 LLGRTGRIEQAVAL--IKNMAHDPDFLIWSTLLSICSTKGDIVNAEVA------ARHLF- 518

Query: 245 ETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKN 281
           E D    + +  + + YA +G  +  + + N M  KN
Sbjct: 519 ELDPTIAVPYIMLSNMYASMGRWKDVASVRNLMKSKN 555


>gi|359480846|ref|XP_002280702.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Vitis vinifera]
          Length = 785

 Score =  390 bits (1003), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 199/565 (35%), Positives = 332/565 (58%), Gaps = 8/565 (1%)

Query: 31  GQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFL 90
           GQ   AI     +    +     TL  +L  CA  + L +G++VH       +   ++++
Sbjct: 124 GQFENAIGMFREMVSDDVPPTQFTLTNVLASCAAVECLGIGRKVH---SFVVKHGLSSYI 180

Query: 91  S--NHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAER 148
           S  N L++MY K G  V A+ VFD++ +K+  S+N M+S +   G++  A+  F+ M ER
Sbjct: 181 SVANSLLNMYAKSGDPVTAKIVFDRMKLKSTSSWNTMISSHMQSGLVDLAQVQFEQMIER 240

Query: 149 DVVSWNTMIIGYAKSGAVEEGLK-FYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQV 207
           DVVSWN MI GY + G   E L  F K+L   S   ++F+ A  L+ C  LE LKL +Q+
Sbjct: 241 DVVSWNAMISGYNQHGFDREALDIFSKMLMDSSSKPDKFTLASALSACANLENLKLGKQI 300

Query: 208 HGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDET--DARDVLTWTTMVSGYAKLG 265
           H  ++ T F +   + ++++  Y+K G +  A+++ +++     DV+ +T ++ GY KLG
Sbjct: 301 HAHIIRTEFDTFGAVGNALISMYSKSGGVEIAQKIIEQSMISNLDVIAFTALLDGYVKLG 360

Query: 266 DMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLC 325
           D+  A ++F+ +  ++ V+WT +I GY +NG  Q A+ELF  M+    +PN +T ++ L 
Sbjct: 361 DINPARRIFDSLRVRDVVAWTAMIVGYVQNGFNQDAMELFRSMIKEGPKPNNYTLATMLS 420

Query: 326 ACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSM 385
             +S+ SL HG+Q+H    R+   S+  V ++LI MY+K G +ND R VF+L   K +++
Sbjct: 421 VSSSLASLDHGRQIHASATRSGNASSVSVSNALITMYAKSGSINDARWVFNLIHWKRDTI 480

Query: 386 LWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESM 445
            W +MI AL QHG  E+A+ LF  M+ + +KPD IT   +L+ACTH GLV++G +Y+  M
Sbjct: 481 TWTSMIIALAQHGLGEEALTLFERMLENGIKPDHITYVGVLSACTHVGLVEQGRSYYNLM 540

Query: 446 THDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDM 505
            +   IIP   H+AC+I+L  +AG   +    +E MP E D   W +L   C++H N+++
Sbjct: 541 QNAHKIIPTPSHYACMIDLFGRAGLLQEAHAFIENMPIEPDVIAWGSLLASCKVHKNVEL 600

Query: 506 GRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIEN 565
                ++L+   P++S  +  L+++YSA G+      +R+ + ++  KK+Q  SW++I+N
Sbjct: 601 AEVAAERLLLIEPENSGAYSALANVYSACGQWENAANIRKSMKDKGVKKDQGFSWVQIKN 660

Query: 566 KVHAFSVSDSLHPMRDVLYSVLEQL 590
           KVH F V D LHP RD +Y ++ ++
Sbjct: 661 KVHIFGVDDGLHPQRDAIYEMMAKI 685



 Score =  236 bits (602), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 152/542 (28%), Positives = 269/542 (49%), Gaps = 53/542 (9%)

Query: 51  PAETLAFILQQCAESKSLKLGKRVH-------LHLKLTQRKTPTTFLSNHLISMYFKCGS 103
           P++     LQ+  + K    GK +H       LHL +        FL N+L++ Y K G 
Sbjct: 12  PSDPYTSFLQRSLKFKDPFTGKSIHARIIKAGLHLGV--------FLMNNLMNFYAKTGF 63

Query: 104 DVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKS 163
             DA +VFD++PVK++FS+N +LSGYA  G ++ A  +F+ M E D VSW  MI+GY + 
Sbjct: 64  IYDAHRVFDEMPVKSVFSWNIILSGYAKGGRLEEAHRVFEEMPEPDSVSWTAMIVGYNQM 123

Query: 164 GAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVIS 223
           G  E  +  ++ +    +   +F+   +L  C  +E L + R+VH  V+  G  S + ++
Sbjct: 124 GQFENAIGMFREMVSDDVPPTQFTLTNVLASCAAVECLGIGRKVHSFVVKHGLSSYISVA 183

Query: 224 SSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPV 283
           +S+++ YAK G+   A+ +FD    +   +W TM+S + + G ++ A   F +M E++ V
Sbjct: 184 NSLLNMYAKSGDPVTAKIVFDRMKLKSTSSWNTMISSHMQSGLVDLAQVQFEQMIERDVV 243

Query: 284 SWTTLIAGYTRNGLGQKALELFTRMMI-LRIRPNQHTFSSCLCACASIVSLKHGKQVHGF 342
           SW  +I+GY ++G  ++AL++F++M++    +P++ T +S L ACA++ +LK GKQ+H  
Sbjct: 244 SWNAMISGYNQHGFDREALDIFSKMLMDSSSKPDKFTLASALSACANLENLKLGKQIHAH 303

Query: 343 LIRTNFRSNTIVMSSLIDMYSKCGC---------------------------------LN 369
           +IRT F +   V ++LI MYSK G                                  +N
Sbjct: 304 IIRTEFDTFGAVGNALISMYSKSGGVEIAQKIIEQSMISNLDVIAFTALLDGYVKLGDIN 363

Query: 370 DGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNAC 429
             R++FD +    + + W  MI    Q+G+++ A+ LF  M++   KP+  TLA +L+  
Sbjct: 364 PARRIFD-SLRVRDVVAWTAMIVGYVQNGFNQDAMELFRSMIKEGPKPNNYTLATMLSVS 422

Query: 430 THSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYL 489
           +    +  G     S T   G   +      LI + A++G  +        + ++ D+  
Sbjct: 423 SSLASLDHGRQIHASATRS-GNASSVSVSNALITMYAKSGSINDARWVFNLIHWKRDTIT 481

Query: 490 WNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINE 549
           W ++      HG  +    + +++++   +    H     + SA     LVE+ R   N 
Sbjct: 482 WTSMIIALAQHGLGEEALTLFERMLENGIKPD--HITYVGVLSACTHVGLVEQGRSYYNL 539

Query: 550 RQ 551
            Q
Sbjct: 540 MQ 541


>gi|225458036|ref|XP_002280360.1| PREDICTED: pentatricopeptide repeat-containing protein At1g25360
           [Vitis vinifera]
          Length = 799

 Score =  390 bits (1001), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 194/521 (37%), Positives = 311/521 (59%), Gaps = 14/521 (2%)

Query: 87  TTFLSNHLISMYFKCGSD---------VDARKVFDKIPVKNLFSYNNMLSGYANLGMMKH 137
            T + N L+S++ KC S            ARK+FD++  ++  S+  M++GY   G +  
Sbjct: 184 VTSVLNALLSVFVKCASSPLVSSSSLMAAARKLFDEMTERDELSWTTMIAGYVRNGELDA 243

Query: 138 ARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVK 197
           AR   D M E+ VV+WN MI GY   G   E L+ ++ +    I  +EF++  +L+ C  
Sbjct: 244 ARQFLDGMTEKLVVAWNAMISGYVHHGFFLEALEMFRKMYLLGIQWDEFTYTSVLSACAN 303

Query: 198 LEELKLTRQVHGQVLVTGFLSNVVISSSIVDA----YAKCGELSDARRLFDETDARDVLT 253
                  +QVH  +L T    ++  S S+ +A    Y KCG++ +AR++F++   +D+++
Sbjct: 304 AGFFLHGKQVHAYILRTEPRPSLDFSLSVNNALATLYWKCGKVDEARQVFNQMPVKDLVS 363

Query: 254 WTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRI 313
           W  ++SGY   G ++ A   F EMPE+N ++WT +I+G  +NG G+++L+LF RM     
Sbjct: 364 WNAILSGYVNAGRIDEAKSFFEEMPERNLLTWTVMISGLAQNGFGEESLKLFNRMKSEGF 423

Query: 314 RPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQ 373
            P  + F+  + ACA + +L HG+Q+H  L+R  F S+    ++LI MY+KCG +     
Sbjct: 424 EPCDYAFAGAIIACAWLAALMHGRQLHAQLVRLGFDSSLSAGNALITMYAKCGVVEAAHC 483

Query: 374 VFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSG 433
           +F LT    +S+ WN MI+AL QHG+  QA+ LF  M++  + PD+IT   +L+ C+H+G
Sbjct: 484 LF-LTMPYLDSVSWNAMIAALGQHGHGAQALELFELMLKEDILPDRITFLTVLSTCSHAG 542

Query: 434 LVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNAL 493
           LV+EG  YF+SM+   GI P ++H+A +I+LL +AG   +  + +E MP E    +W AL
Sbjct: 543 LVEEGHRYFKSMSGLYGICPGEDHYARMIDLLCRAGKFSEAKDMIETMPVEPGPPIWEAL 602

Query: 494 HGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFK 553
              CRIHGN+D+G +  ++L +  PQ   T+ LLS++Y+ +G+   V KVR+L+ ++  K
Sbjct: 603 LAGCRIHGNMDLGIQAAERLFELMPQHDGTYVLLSNMYATVGRWDDVAKVRKLMRDKGVK 662

Query: 554 KEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQM 594
           KE   SWIE+ENKVH F V D +HP    +Y+ LE+L  +M
Sbjct: 663 KEPGCSWIEVENKVHVFLVDDIVHPEVQAVYNYLEELGLKM 703



 Score =  209 bits (531), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 143/513 (27%), Positives = 250/513 (48%), Gaps = 55/513 (10%)

Query: 40  LDLLAQRGIRLPAETLAFILQQCAESK--SLKLGKRVHLHLKLTQRKTPTTFLSNHLISM 97
           +D+     +R  A   A  LQQC      S  + + VH H+  +  K P  ++ N LI +
Sbjct: 1   MDMRNAANVRRLANQYAAQLQQCCPHNPMSYSIARTVHAHMIASGFK-PRGYILNRLIDV 59

Query: 98  YFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLF--DNMAERDVVSWNT 155
           Y K    V A  +FD+I   ++ +   +++ +++ G    AR +F    +  RD V +N 
Sbjct: 60  YCKSSDLVSAHHLFDEIRQPDIVARTTLIAAHSSAGNSNLAREIFFATPLGIRDTVCYNA 119

Query: 156 MIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGIL-TICVKLEELKLTRQVHGQVLV- 213
           MI GY+ +      ++ ++ L R     + F+F  +L  + + +E+ K  +Q+H  V+  
Sbjct: 120 MITGYSHNNDGFGAIELFRDLLRNGFRPDNFTFTSVLGALALIVEDEKQCQQIHCAVVKS 179

Query: 214 -TGFLSNVVISSSIVDAYAKCG---------ELSDARRLFDETDARDVLTWTTMVSGYAK 263
            +GF+++V+  ++++  + KC           ++ AR+LFDE   RD L+WTTM++GY +
Sbjct: 180 GSGFVTSVL--NALLSVFVKCASSPLVSSSSLMAAARKLFDEMTERDELSWTTMIAGYVR 237

Query: 264 LGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSC 323
            G++++A +  + M EK  V+W  +I+GY  +G   +ALE+F +M +L I+ ++ T++S 
Sbjct: 238 NGELDAARQFLDGMTEKLVVAWNAMISGYVHHGFFLEALEMFRKMYLLGIQWDEFTYTSV 297

Query: 324 LCACASIVSLKHGKQVHGFLIRTNFRS----NTIVMSSLIDMYSKCGCLNDGRQVFDLTD 379
           L ACA+     HGKQVH +++RT  R     +  V ++L  +Y KCG +++ RQVF+   
Sbjct: 298 LSACANAGFFLHGKQVHAYILRTEPRPSLDFSLSVNNALATLYWKCGKVDEARQVFNQMP 357

Query: 380 NKE------------------------------NSMLWNTMISALTQHGYDEQAIRLFHD 409
            K+                              N + W  MIS L Q+G+ E++++LF+ 
Sbjct: 358 VKDLVSWNAILSGYVNAGRIDEAKSFFEEMPERNLLTWTVMISGLAQNGFGEESLKLFNR 417

Query: 410 MVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAG 469
           M     +P     A  + AC     +  G      +   LG   +      LI + A+ G
Sbjct: 418 MKSEGFEPCDYAFAGAIIACAWLAALMHGRQLHAQLVR-LGFDSSLSAGNALITMYAKCG 476

Query: 470 CSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGN 502
             +        MPY  DS  WNA+      HG+
Sbjct: 477 VVEAAHCLFLTMPYL-DSVSWNAMIAALGQHGH 508



 Score =  159 bits (403), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 108/409 (26%), Positives = 192/409 (46%), Gaps = 58/409 (14%)

Query: 18  NCLIQSFLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLH 77
           N +I  +   +  G   EA+     +   GI+    T   +L  CA +     GK+VH +
Sbjct: 260 NAMISGY---VHHGFFLEALEMFRKMYLLGIQWDEFTYTSVLSACANAGFFLHGKQVHAY 316

Query: 78  LKLTQRKTPTTF---LSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGM 134
           +  T+ +    F   ++N L ++Y+KCG   +AR+VF+++PVK+L S+N +LSGY N G 
Sbjct: 317 ILRTEPRPSLDFSLSVNNALATLYWKCGKVDEARQVFNQMPVKDLVSWNAILSGYVNAGR 376

Query: 135 MKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTI 194
           +  A++ F+ M ER++++W  MI G A++G  EE LK +  ++       +++FAG +  
Sbjct: 377 IDEAKSFFEEMPERNLLTWTVMISGLAQNGFGEESLKLFNRMKSEGFEPCDYAFAGAIIA 436

Query: 195 CVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTW 254
           C  L  L   RQ+H Q++  GF S++   ++++  YAKCG +  A  LF      D ++W
Sbjct: 437 CAWLAALMHGRQLHAQLVRLGFDSSLSAGNALITMYAKCGVVEAAHCLFLTMPYLDSVSW 496

Query: 255 TTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIR 314
             M                               IA   ++G G +ALELF  M+   I 
Sbjct: 497 NAM-------------------------------IAALGQHGHGAQALELFELMLKEDIL 525

Query: 315 PNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIV---------MSSLIDMYSKC 365
           P++ TF + L  C+    ++ G +         F+S + +          + +ID+  + 
Sbjct: 526 PDRITFLTVLSTCSHAGLVEEGHRY--------FKSMSGLYGICPGEDHYARMIDLLCRA 577

Query: 366 GCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAI----RLFHDM 410
           G  ++ + + +    +    +W  +++    HG  +  I    RLF  M
Sbjct: 578 GKFSEAKDMIETMPVEPGPPIWEALLAGCRIHGNMDLGIQAAERLFELM 626


>gi|222637368|gb|EEE67500.1| hypothetical protein OsJ_24934 [Oryza sativa Japonica Group]
          Length = 830

 Score =  390 bits (1001), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 198/588 (33%), Positives = 330/588 (56%), Gaps = 11/588 (1%)

Query: 17  NNCLIQSFLSLISKGQLSEAISSL--DLLAQRGIRLPAETLAFILQQCAESKSLKLGKRV 74
           +  L  + +S  ++  L+    S+   LL    +R    +   ++    +  +L      
Sbjct: 124 DTVLHNAMMSAFARASLAAPAVSVFHALLGSGSLRPDDYSFTALISAVGQMHNLAAPHCT 183

Query: 75  HLHLKLTQRKTPTTF-LSNHLISMYFKCGS---DVDARKVFDKIPVKNLFSYNNMLSGYA 130
            LH  + +        +SN LI++Y KC +     DARKV D++P K+  ++  M+ GY 
Sbjct: 184 QLHCSVLKSGAAAVLSVSNALIALYMKCDTPEASWDARKVLDEMPDKDDLTWTTMVVGYV 243

Query: 131 NLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAG 190
             G +  AR++F+ +  +  V WN MI GY +SG   +  + ++ +    +  +EF+F  
Sbjct: 244 RRGDVNAARSVFEEVDGKFDVVWNAMISGYVQSGMCADAFELFRRMVSEKVPLDEFTFTS 303

Query: 191 ILTICVKLEELKLTRQVHGQV--LVTGFLSNVV--ISSSIVDAYAKCGELSDARRLFDET 246
           +L+ C         + VHGQ+  L   F+      +++++V  Y+K G++  A+R+FD  
Sbjct: 304 VLSACANAGFFVHGKSVHGQIIRLQPNFVPEAALPVNNALVTLYSKGGKIVIAKRIFDTM 363

Query: 247 DARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFT 306
           + +DV++W T++SGY   G ++ A ++F  MP KN +SW  +++GY   GL + AL+LF 
Sbjct: 364 NLKDVVSWNTILSGYIDSGCLDKAVEVFKVMPYKNDLSWMVMVSGYVHGGLSEDALKLFN 423

Query: 307 RMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCG 366
           +M    ++P  +T++  + AC  + +LKHG+Q+H  L++  F ++    ++L+ MY+KCG
Sbjct: 424 QMRAEDVKPCDYTYAGAIAACGELGALKHGRQLHAHLVQCGFEASNSAGNALLTMYAKCG 483

Query: 367 CLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVIL 426
            +ND R VF +  N + S+ WN MISAL QHG+  +A+ LF  MV   + PD+I+   IL
Sbjct: 484 AVNDARLVFLVMPNLD-SVSWNAMISALGQHGHGREALELFDQMVAEGIDPDRISFLTIL 542

Query: 427 NACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHD 486
            AC H+GLV EG  YFESM  D GI P ++H+A LI+LL ++G   +  + ++ MP+E  
Sbjct: 543 TACNHAGLVDEGFHYFESMKRDFGISPGEDHYARLIDLLGRSGRIGEARDLIKTMPFEPT 602

Query: 487 SYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQL 546
             +W A+   CR +G+++ G    DQL    PQ   T+ LLS+ YSA G+     +VR+L
Sbjct: 603 PSIWEAILSGCRTNGDMEFGAYAADQLFRMIPQHDGTYILLSNTYSAAGRWVDAARVRKL 662

Query: 547 INERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQM 594
           + +R  KKE   SWIE+ +K+H F V D+ HP    +Y  LE +  +M
Sbjct: 663 MRDRGVKKEPGCSWIEVGSKIHVFLVGDTKHPEAQEVYQFLEVIGARM 710



 Score =  172 bits (435), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 125/448 (27%), Positives = 209/448 (46%), Gaps = 46/448 (10%)

Query: 113 KIPVKNLFSYNNMLSGYANLGMMKHARNLFDNM--AERDVVSWNTMIIGYAKSGAVEEGL 170
           + P +      ++++  A  G ++ A   FD +  A RD V  N M+  +A++      +
Sbjct: 86  RTPTRAPSPATSLVAAQAAAGRLRDAAAFFDAVPPARRDTVLHNAMMSAFARASLAAPAV 145

Query: 171 K-FYKVLRRFSISCNEFSFAGILTICVKLEELKLTR--QVHGQVLVTGFLSNVVISSSIV 227
             F+ +L   S+  +++SF  +++   ++  L      Q+H  VL +G  + + +S++++
Sbjct: 146 SVFHALLGSGSLRPDDYSFTALISAVGQMHNLAAPHCTQLHCSVLKSGAAAVLSVSNALI 205

Query: 228 DAYAKCG--ELS-DARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVS 284
             Y KC   E S DAR++ DE   +D LTWTTMV GY + GD+ +A  +F E+  K  V 
Sbjct: 206 ALYMKCDTPEASWDARKVLDEMPDKDDLTWTTMVVGYVRRGDVNAARSVFEEVDGKFDVV 265

Query: 285 WTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLI 344
           W  +I+GY ++G+   A ELF RM+  ++  ++ TF+S L ACA+     HGK VHG +I
Sbjct: 266 WNAMISGYVQSGMCADAFELFRRMVSEKVPLDEFTFTSVLSACANAGFFVHGKSVHGQII 325

Query: 345 R--TNF--RSNTIVMSSLIDMYSK-------------------------------CGCLN 369
           R   NF   +   V ++L+ +YSK                                GCL+
Sbjct: 326 RLQPNFVPEAALPVNNALVTLYSKGGKIVIAKRIFDTMNLKDVVSWNTILSGYIDSGCLD 385

Query: 370 DGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNAC 429
              +VF +   K N + W  M+S     G  E A++LF+ M    VKP   T A  + AC
Sbjct: 386 KAVEVFKVMPYK-NDLSWMVMVSGYVHGGLSEDALKLFNQMRAEDVKPCDYTYAGAIAAC 444

Query: 430 THSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYL 489
              G ++ G      +    G   +      L+ + A+ G  +        MP   DS  
Sbjct: 445 GELGALKHGRQLHAHLVQ-CGFEASNSAGNALLTMYAKCGAVNDARLVFLVMP-NLDSVS 502

Query: 490 WNALHGVCRIHGNIDMGRKVVDQLIDQN 517
           WNA+      HG+     ++ DQ++ + 
Sbjct: 503 WNAMISALGQHGHGREALELFDQMVAEG 530


>gi|449487256|ref|XP_004157540.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Cucumis sativus]
          Length = 782

 Score =  390 bits (1001), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 198/548 (36%), Positives = 333/548 (60%), Gaps = 8/548 (1%)

Query: 49  RLPAE--TLAFILQQCAESKSLKLGKRVH-LHLKLTQRKTPTTFLSNHLISMYFKCGSDV 105
           R+P    T++ +L  CA +++L +G+++H   +KL         ++  L++MY KCG  V
Sbjct: 137 RVPPSQFTVSNVLSSCAANQTLDIGRKIHSFVVKLGLGSCVP--VATSLLNMYAKCGDPV 194

Query: 106 DARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGA 165
            A+ VFD++ VKN+ ++N ++S Y   G  + A + F+ M +RD+VSWN+MI GY++ G 
Sbjct: 195 IAKVVFDRMTVKNISTWNALISLYMQSGQFELAASQFEKMPDRDIVSWNSMISGYSQQGY 254

Query: 166 VEEGLK-FYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISS 224
             E L  F K+L   S+  + F+ A IL+ C  LE+L + +Q+H  +L     ++  + +
Sbjct: 255 NLEALAIFSKMLNEPSLKPDNFTLASILSACANLEKLNIGKQIHAYILRAETETSGAVGN 314

Query: 225 SIVDAYAKCGELSDARRLFD--ETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNP 282
           +++  YAK G +  AR + +   T   +++ +T+++ GY KLG+++ A ++FN++ +++ 
Sbjct: 315 ALISMYAKSGGVEIARLIVEHNRTSNLNIIAFTSLLDGYTKLGNVKPAREIFNKLRDRDV 374

Query: 283 VSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGF 342
           V+WT +I GY +NGL   ALELF  M+     PN +T ++ L   +S+  L+HGKQ+H  
Sbjct: 375 VAWTAMIVGYVQNGLWNDALELFRLMVNEGPEPNSYTLAAMLSVSSSLTILEHGKQIHAS 434

Query: 343 LIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQ 402
            I+    S   V ++LI MY+K G +N  ++VFDL + K+  + W +MI AL QHG  ++
Sbjct: 435 AIKAGESSTPSVTNALIAMYAKTGNINVAKRVFDLPNGKKEIVSWTSMIMALAQHGLGKE 494

Query: 403 AIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLI 462
           AI LF  M+   +KPD IT   +L+ACTH GLV++G  Y+  MT    I P   H+AC+I
Sbjct: 495 AINLFERMLSVGMKPDHITYVGVLSACTHVGLVEQGRKYYNMMTEVHEIEPTLSHYACMI 554

Query: 463 ELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSA 522
           +L  +AG   +    +E MP E D+  W +L   C+IH N D+ +   ++L+  +P +S 
Sbjct: 555 DLYGRAGLLQEAYLFIESMPIEPDNIAWGSLLASCKIHKNADLAKVAAERLLLIDPGNSG 614

Query: 523 THGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDV 582
            +  L+++YSA GK     + R+L+ +R  +KE+ ISWI I+N+VHAF V D +HP +D 
Sbjct: 615 AYLALANVYSACGKWENAAQTRKLMKDRGVRKEKGISWIHIKNEVHAFGVEDVIHPQKDE 674

Query: 583 LYSVLEQL 590
           +Y ++ ++
Sbjct: 675 IYKLMAEI 682



 Score =  216 bits (551), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 141/534 (26%), Positives = 259/534 (48%), Gaps = 74/534 (13%)

Query: 52  AETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVF 111
           +E  A ILQ     K    G+ VH  + + +      +L N+L++ Y K GS   A  VF
Sbjct: 10  SEFFAHILQTSVRIKDPFAGRSVHCQI-IKKGLHLGVYLMNNLMTFYAKTGSLRFAHHVF 68

Query: 112 DKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLK 171
           D++P+K+ FS+N ++SGYA  G  + +R L   M + D VSW  +I+GY + G  +  + 
Sbjct: 69  DEMPLKSTFSWNTLISGYAKQGNFEVSRRLLYEMPDCDPVSWTAIIVGYNQFGLFDNAIW 128

Query: 172 FYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYA 231
            +  +    +  ++F+ + +L+ C   + L + R++H  V+  G  S V +++S+++ YA
Sbjct: 129 MFAKMISERVPPSQFTVSNVLSSCAANQTLDIGRKIHSFVVKLGLGSCVPVATSLLNMYA 188

Query: 232 KCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAG 291
           KCG+   A+ +FD    +++ TW  ++S Y + G  E A+  F +MP+++ VSW ++I+G
Sbjct: 189 KCGDPVIAKVVFDRMTVKNISTWNALISLYMQSGQFELAASQFEKMPDRDIVSWNSMISG 248

Query: 292 YTRNGLGQKALELFTRMM-ILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRS 350
           Y++ G   +AL +F++M+    ++P+  T +S L ACA++  L  GKQ+H +++R    +
Sbjct: 249 YSQQGYNLEALAIFSKMLNEPSLKPDNFTLASILSACANLEKLNIGKQIHAYILRAETET 308

Query: 351 ---------------------------------NTIVMSSLIDMYSKCGCLNDGRQVFDL 377
                                            N I  +SL+D Y+K G +   R++F+ 
Sbjct: 309 SGAVGNALISMYAKSGGVEIARLIVEHNRTSNLNIIAFTSLLDGYTKLGNVKPAREIFNK 368

Query: 378 TDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACT------- 430
             +++  + W  MI    Q+G    A+ LF  MV    +P+  TLA +L+  +       
Sbjct: 369 LRDRD-VVAWTAMIVGYVQNGLWNDALELFRLMVNEGPEPNSYTLAAMLSVSSSLTILEH 427

Query: 431 ----HSGLVQEGLTYFESMTHDLGI----------------IPNQEHH----ACLIELLA 466
               H+  ++ G +   S+T+ L                  +PN +        +I  LA
Sbjct: 428 GKQIHASAIKAGESSTPSVTNALIAMYAKTGNINVAKRVFDLPNGKKEIVSWTSMIMALA 487

Query: 467 QAGCSDQLMNQLEK-----MPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLID 515
           Q G   + +N  E+     M  +H +Y+   +   C   G ++ GRK  + + +
Sbjct: 488 QHGLGKEAINLFERMLSVGMKPDHITYV--GVLSACTHVGLVEQGRKYYNMMTE 539



 Score = 59.3 bits (142), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 45/156 (28%), Positives = 82/156 (52%), Gaps = 10/156 (6%)

Query: 28  ISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLH-LKLTQRKTP 86
           +  G  ++A+    L+   G    + TLA +L   +    L+ GK++H   +K  +  TP
Sbjct: 385 VQNGLWNDALELFRLMVNEGPEPNSYTLAAMLSVSSSLTILEHGKQIHASAIKAGESSTP 444

Query: 87  TTFLSNHLISMYFKCGSDVDARKVFDKIP--VKNLFSYNNMLSGYANLGMMKHARNLFDN 144
           +  ++N LI+MY K G+   A++VFD +P   K + S+ +M+   A  G+ K A NLF+ 
Sbjct: 445 S--VTNALIAMYAKTGNINVAKRVFD-LPNGKKEIVSWTSMIMALAQHGLGKEAINLFER 501

Query: 145 M----AERDVVSWNTMIIGYAKSGAVEEGLKFYKVL 176
           M     + D +++  ++      G VE+G K+Y ++
Sbjct: 502 MLSVGMKPDHITYVGVLSACTHVGLVEQGRKYYNMM 537


>gi|449449306|ref|XP_004142406.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Cucumis sativus]
          Length = 782

 Score =  389 bits (999), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 198/548 (36%), Positives = 333/548 (60%), Gaps = 8/548 (1%)

Query: 49  RLPAE--TLAFILQQCAESKSLKLGKRVH-LHLKLTQRKTPTTFLSNHLISMYFKCGSDV 105
           R+P    T++ +L  CA +++L +G+++H   +KL         ++  L++MY KCG  V
Sbjct: 137 RVPPSQFTVSNVLSSCAANQTLDIGRKIHSFVVKLGLGSCVP--VATSLLNMYAKCGDPV 194

Query: 106 DARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGA 165
            A+ VFD++ VKN+ ++N ++S Y   G  + A + F+ M +RD+VSWN+MI GY++ G 
Sbjct: 195 IAKVVFDRMTVKNISTWNALISLYMQSGQFELAASQFEKMPDRDIVSWNSMISGYSQQGY 254

Query: 166 VEEGLK-FYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISS 224
             E L  F K+L   S+  + F+ A IL+ C  LE+L + +Q+H  +L     ++  + +
Sbjct: 255 NLEALVIFSKMLNEPSLKPDNFTLASILSACANLEKLNIGKQIHAYILRAETETSGAVGN 314

Query: 225 SIVDAYAKCGELSDARRLFD--ETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNP 282
           +++  YAK G +  AR + +   T   +++ +T+++ GY KLG+++ A ++FN++ +++ 
Sbjct: 315 ALISMYAKSGGVEIARLIVEHNRTSNLNIIAFTSLLDGYTKLGNVKPAREIFNKLRDRDV 374

Query: 283 VSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGF 342
           V+WT +I GY +NGL   ALELF  M+     PN +T ++ L   +S+  L+HGKQ+H  
Sbjct: 375 VAWTAMIVGYVQNGLWNDALELFRLMVNEGPEPNSYTLAAMLSVSSSLTILEHGKQIHAS 434

Query: 343 LIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQ 402
            I+    S   V ++LI MY+K G +N  ++VFDL + K+  + W +MI AL QHG  ++
Sbjct: 435 AIKAGESSTPSVTNALIAMYAKTGNINVAKRVFDLPNGKKEIVSWTSMIMALAQHGLGKE 494

Query: 403 AIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLI 462
           AI LF  M+   +KPD IT   +L+ACTH GLV++G  Y+  MT    I P   H+AC+I
Sbjct: 495 AINLFERMLSVGMKPDHITYVGVLSACTHVGLVEQGRKYYNMMTEVHEIEPTLSHYACMI 554

Query: 463 ELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSA 522
           +L  +AG   +    +E MP E D+  W +L   C+IH N D+ +   ++L+  +P +S 
Sbjct: 555 DLYGRAGLLQEAYLFIESMPIEPDNIAWGSLLASCKIHKNADLAKVAAERLLLIDPGNSG 614

Query: 523 THGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDV 582
            +  L+++YSA GK     + R+L+ +R  +KE+ ISWI I+N+VHAF V D +HP +D 
Sbjct: 615 AYLALANVYSACGKWENAAQTRKLMKDRGVRKEKGISWIHIKNEVHAFGVEDVIHPQKDE 674

Query: 583 LYSVLEQL 590
           +Y ++ ++
Sbjct: 675 IYKLMAEI 682



 Score =  216 bits (549), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 141/534 (26%), Positives = 259/534 (48%), Gaps = 74/534 (13%)

Query: 52  AETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVF 111
           +E  A ILQ     K    G+ VH  + + +      +L N+L++ Y K GS   A  VF
Sbjct: 10  SEFFAHILQTSVRIKDPFAGRSVHCQI-IKKGLHLGVYLMNNLMTFYAKTGSLRFAHHVF 68

Query: 112 DKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLK 171
           D++P+K+ FS+N ++SGYA  G  + +R L   M + D VSW  +I+GY + G  +  + 
Sbjct: 69  DEMPLKSTFSWNTLISGYAKQGNFEVSRRLLYEMPDCDPVSWTAIIVGYNQFGLFDNAIW 128

Query: 172 FYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYA 231
            +  +    +  ++F+ + +L+ C   + L + R++H  V+  G  S V +++S+++ YA
Sbjct: 129 MFAKMISERVPPSQFTVSNVLSSCAANQTLDIGRKIHSFVVKLGLGSCVPVATSLLNMYA 188

Query: 232 KCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAG 291
           KCG+   A+ +FD    +++ TW  ++S Y + G  E A+  F +MP+++ VSW ++I+G
Sbjct: 189 KCGDPVIAKVVFDRMTVKNISTWNALISLYMQSGQFELAASQFEKMPDRDIVSWNSMISG 248

Query: 292 YTRNGLGQKALELFTRMM-ILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRS 350
           Y++ G   +AL +F++M+    ++P+  T +S L ACA++  L  GKQ+H +++R    +
Sbjct: 249 YSQQGYNLEALVIFSKMLNEPSLKPDNFTLASILSACANLEKLNIGKQIHAYILRAETET 308

Query: 351 ---------------------------------NTIVMSSLIDMYSKCGCLNDGRQVFDL 377
                                            N I  +SL+D Y+K G +   R++F+ 
Sbjct: 309 SGAVGNALISMYAKSGGVEIARLIVEHNRTSNLNIIAFTSLLDGYTKLGNVKPAREIFNK 368

Query: 378 TDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACT------- 430
             +++  + W  MI    Q+G    A+ LF  MV    +P+  TLA +L+  +       
Sbjct: 369 LRDRD-VVAWTAMIVGYVQNGLWNDALELFRLMVNEGPEPNSYTLAAMLSVSSSLTILEH 427

Query: 431 ----HSGLVQEGLTYFESMTHDLGI----------------IPNQEHH----ACLIELLA 466
               H+  ++ G +   S+T+ L                  +PN +        +I  LA
Sbjct: 428 GKQIHASAIKAGESSTPSVTNALIAMYAKTGNINVAKRVFDLPNGKKEIVSWTSMIMALA 487

Query: 467 QAGCSDQLMNQLEK-----MPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLID 515
           Q G   + +N  E+     M  +H +Y+   +   C   G ++ GRK  + + +
Sbjct: 488 QHGLGKEAINLFERMLSVGMKPDHITYV--GVLSACTHVGLVEQGRKYYNMMTE 539



 Score = 59.3 bits (142), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 45/156 (28%), Positives = 82/156 (52%), Gaps = 10/156 (6%)

Query: 28  ISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLH-LKLTQRKTP 86
           +  G  ++A+    L+   G    + TLA +L   +    L+ GK++H   +K  +  TP
Sbjct: 385 VQNGLWNDALELFRLMVNEGPEPNSYTLAAMLSVSSSLTILEHGKQIHASAIKAGESSTP 444

Query: 87  TTFLSNHLISMYFKCGSDVDARKVFDKIP--VKNLFSYNNMLSGYANLGMMKHARNLFDN 144
           +  ++N LI+MY K G+   A++VFD +P   K + S+ +M+   A  G+ K A NLF+ 
Sbjct: 445 S--VTNALIAMYAKTGNINVAKRVFD-LPNGKKEIVSWTSMIMALAQHGLGKEAINLFER 501

Query: 145 M----AERDVVSWNTMIIGYAKSGAVEEGLKFYKVL 176
           M     + D +++  ++      G VE+G K+Y ++
Sbjct: 502 MLSVGMKPDHITYVGVLSACTHVGLVEQGRKYYNMM 537


>gi|34393605|dbj|BAC83258.1| pentatricopeptide (PPR) repeat-containing protein-like protein
           [Oryza sativa Japonica Group]
 gi|50509373|dbj|BAD30928.1| pentatricopeptide (PPR) repeat-containing protein-like protein
           [Oryza sativa Japonica Group]
          Length = 808

 Score =  388 bits (997), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 198/588 (33%), Positives = 330/588 (56%), Gaps = 11/588 (1%)

Query: 17  NNCLIQSFLSLISKGQLSEAISSL--DLLAQRGIRLPAETLAFILQQCAESKSLKLGKRV 74
           +  L  + +S  ++  L+    S+   LL    +R    +   ++    +  +L      
Sbjct: 126 DTVLHNAMMSAFARASLAAPAVSVFHALLGSGSLRPDDYSFTALISAVGQMHNLAAPHCT 185

Query: 75  HLHLKLTQRKTPTTF-LSNHLISMYFKCGS---DVDARKVFDKIPVKNLFSYNNMLSGYA 130
            LH  + +        +SN LI++Y KC +     DARKV D++P K+  ++  M+ GY 
Sbjct: 186 QLHCSVLKSGAAAVLSVSNALIALYMKCDTPEASWDARKVLDEMPDKDDLTWTTMVVGYV 245

Query: 131 NLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAG 190
             G +  AR++F+ +  +  V WN MI GY +SG   +  + ++ +    +  +EF+F  
Sbjct: 246 RRGDVNAARSVFEEVDGKFDVVWNAMISGYVQSGMCADAFELFRRMVSEKVPLDEFTFTS 305

Query: 191 ILTICVKLEELKLTRQVHGQV--LVTGFLSNVV--ISSSIVDAYAKCGELSDARRLFDET 246
           +L+ C         + VHGQ+  L   F+      +++++V  Y+K G++  A+R+FD  
Sbjct: 306 VLSACANAGFFVHGKSVHGQIIRLQPNFVPEAALPVNNALVTLYSKGGKIVIAKRIFDTM 365

Query: 247 DARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFT 306
           + +DV++W T++SGY   G ++ A ++F  MP KN +SW  +++GY   GL + AL+LF 
Sbjct: 366 NLKDVVSWNTILSGYIDSGCLDKAVEVFKVMPYKNDLSWMVMVSGYVHGGLSEDALKLFN 425

Query: 307 RMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCG 366
           +M    ++P  +T++  + AC  + +LKHG+Q+H  L++  F ++    ++L+ MY+KCG
Sbjct: 426 QMRAEDVKPCDYTYAGAIAACGELGALKHGRQLHAHLVQCGFEASNSAGNALLTMYAKCG 485

Query: 367 CLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVIL 426
            +ND R VF +  N + S+ WN MISAL QHG+  +A+ LF  MV   + PD+I+   IL
Sbjct: 486 AVNDARLVFLVMPNLD-SVSWNAMISALGQHGHGREALELFDQMVAEGIDPDRISFLTIL 544

Query: 427 NACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHD 486
            AC H+GLV EG  YFESM  D GI P ++H+A LI+LL ++G   +  + ++ MP+E  
Sbjct: 545 TACNHAGLVDEGFHYFESMKRDFGISPGEDHYARLIDLLGRSGRIGEARDLIKTMPFEPT 604

Query: 487 SYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQL 546
             +W A+   CR +G+++ G    DQL    PQ   T+ LLS+ YSA G+     +VR+L
Sbjct: 605 PSIWEAILSGCRTNGDMEFGAYAADQLFRMIPQHDGTYILLSNTYSAAGRWVDAARVRKL 664

Query: 547 INERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQM 594
           + +R  KKE   SWIE+ +K+H F V D+ HP    +Y  LE +  +M
Sbjct: 665 MRDRGVKKEPGCSWIEVGSKIHVFLVGDTKHPEAQEVYQFLEVIGARM 712



 Score =  173 bits (439), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 130/471 (27%), Positives = 217/471 (46%), Gaps = 46/471 (9%)

Query: 90  LSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNM--AE 147
           L+  LI +Y           +F   P     +  ++++ +A  G ++ A   FD +  A 
Sbjct: 65  LTLRLIHLYTLSPDLATPAALFRSDPDPGPVAATSLVAAHAAAGRLRDAAAFFDAVPPAR 124

Query: 148 RDVVSWNTMIIGYAKSGAVEEGLK-FYKVLRRFSISCNEFSFAGILTICVKLEELKLTR- 205
           RD V  N M+  +A++      +  F+ +L   S+  +++SF  +++   ++  L     
Sbjct: 125 RDTVLHNAMMSAFARASLAAPAVSVFHALLGSGSLRPDDYSFTALISAVGQMHNLAAPHC 184

Query: 206 -QVHGQVLVTGFLSNVVISSSIVDAYAKCG--ELS-DARRLFDETDARDVLTWTTMVSGY 261
            Q+H  VL +G  + + +S++++  Y KC   E S DAR++ DE   +D LTWTTMV GY
Sbjct: 185 TQLHCSVLKSGAAAVLSVSNALIALYMKCDTPEASWDARKVLDEMPDKDDLTWTTMVVGY 244

Query: 262 AKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFS 321
            + GD+ +A  +F E+  K  V W  +I+GY ++G+   A ELF RM+  ++  ++ TF+
Sbjct: 245 VRRGDVNAARSVFEEVDGKFDVVWNAMISGYVQSGMCADAFELFRRMVSEKVPLDEFTFT 304

Query: 322 SCLCACASIVSLKHGKQVHGFLIR--TNF--RSNTIVMSSLIDMYSK------------- 364
           S L ACA+     HGK VHG +IR   NF   +   V ++L+ +YSK             
Sbjct: 305 SVLSACANAGFFVHGKSVHGQIIRLQPNFVPEAALPVNNALVTLYSKGGKIVIAKRIFDT 364

Query: 365 ------------------CGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRL 406
                              GCL+   +VF +   K N + W  M+S     G  E A++L
Sbjct: 365 MNLKDVVSWNTILSGYIDSGCLDKAVEVFKVMPYK-NDLSWMVMVSGYVHGGLSEDALKL 423

Query: 407 FHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLA 466
           F+ M    VKP   T A  + AC   G ++ G      +    G   +      L+ + A
Sbjct: 424 FNQMRAEDVKPCDYTYAGAIAACGELGALKHGRQLHAHLVQ-CGFEASNSAGNALLTMYA 482

Query: 467 QAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQN 517
           + G  +        MP   DS  WNA+      HG+     ++ DQ++ + 
Sbjct: 483 KCGAVNDARLVFLVMP-NLDSVSWNAMISALGQHGHGREALELFDQMVAEG 532


>gi|357116509|ref|XP_003560023.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Brachypodium distachyon]
          Length = 804

 Score =  388 bits (996), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 192/513 (37%), Positives = 309/513 (60%), Gaps = 10/513 (1%)

Query: 90  LSNHLISMYFKC---GSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNM- 145
           +SN LI++Y KC   G   DARKV D++P K+  ++  ++ G+   G +  AR+ F+ + 
Sbjct: 198 VSNALIALYMKCDAPGVTRDARKVLDEMPEKDELTWTTIVVGHVRKGDVHAARSAFEEID 257

Query: 146 AERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTR 205
            E DVV WN MI GY +SG   E  + ++ +    I  +EF+F  +L+ C         +
Sbjct: 258 GEFDVV-WNAMISGYVQSGMCAEAFELFRRMVSKRIPPDEFTFTSLLSACANAGFFLHGK 316

Query: 206 QVHGQV--LVTGFLSNVV--ISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGY 261
            VHGQ   L   F+      +++++V  Y+K G+++ A ++FD    +DV++W T++SGY
Sbjct: 317 SVHGQFIRLQPDFVPEAALPVNNALVTLYSKSGKIAVATKIFDSMTLKDVVSWNTILSGY 376

Query: 262 AKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFS 321
            + G +++A+++F EMP K+ +SW  +++GY   GL + AL+LF +M    ++P  +T++
Sbjct: 377 IESGCLDNAARIFKEMPYKSELSWMVMVSGYVHGGLAEDALKLFNQMRSEDVKPCDYTYA 436

Query: 322 SCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNK 381
             + AC  + +LKHGKQ+H  L++  F ++    ++L+ MY++CG + D R VF +  N 
Sbjct: 437 GAVAACGELGALKHGKQLHAHLVQCGFEASNSAGNALLTMYARCGAVKDARLVFLVMPNV 496

Query: 382 ENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTY 441
            +S+ WN MISAL QHG+  +A+ LF  MV   + PD+I+   IL AC H+GLV +G  Y
Sbjct: 497 -DSVSWNAMISALGQHGHGREALELFDQMVAQGIYPDRISFLTILTACNHAGLVDDGFQY 555

Query: 442 FESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHG 501
           FESM  D GI P ++H+A LI+LL +AG   +  + ++ MP+E    +W A+   CRI+G
Sbjct: 556 FESMERDFGISPGEDHYARLIDLLGRAGRIGEARDLIKTMPFEPTPAIWEAILSGCRING 615

Query: 502 NIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWI 561
           ++++G    DQL    P+   T+ LLS+ YSA G+     +VR+L+ +R  KKE   SWI
Sbjct: 616 DMELGAYAADQLFKMVPEHDGTYILLSNTYSAAGRWVDAARVRKLMRDRGVKKEPGCSWI 675

Query: 562 EIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQM 594
           E+ NKVH F V D+ HP    +Y  LE +  +M
Sbjct: 676 EVGNKVHVFLVGDTKHPDAHEVYRFLEMVGAKM 708



 Score =  164 bits (415), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 128/476 (26%), Positives = 208/476 (43%), Gaps = 72/476 (15%)

Query: 83  RKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLF 142
           R  P    +  L+S Y   G   D+   FD +PV                          
Sbjct: 84  RADPGPVAATSLVSAYAVAGRLRDSAAFFDSVPV-------------------------- 117

Query: 143 DNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVL--RRFSISCNEFSFAGILTICVKLEE 200
              A RD V  N MI  +A++      +  ++ L     S+  +++SF  +L+   ++ +
Sbjct: 118 ---ARRDTVLHNAMISAFARASLAAPAVSVFRSLLASDDSLRPDDYSFTSLLSAVGQMHD 174

Query: 201 LKLTR--QVHGQVLVTGFLSNVVISSSIVDAYAKC---GELSDARRLFDETDARDVLTWT 255
           L ++   Q+H  V   G  + + +S++++  Y KC   G   DAR++ DE   +D LTWT
Sbjct: 175 LAVSHCTQLHCAVHKLGAGAVLSVSNALIALYMKCDAPGVTRDARKVLDEMPEKDELTWT 234

Query: 256 TMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRP 315
           T+V G+ + GD+ +A   F E+  +  V W  +I+GY ++G+  +A ELF RM+  RI P
Sbjct: 235 TIVVGHVRKGDVHAARSAFEEIDGEFDVVWNAMISGYVQSGMCAEAFELFRRMVSKRIPP 294

Query: 316 NQHTFSSCLCACASIVSLKHGKQVHGFLIR--TNF--RSNTIVMSSLIDMYSKCGCLNDG 371
           ++ TF+S L ACA+     HGK VHG  IR   +F   +   V ++L+ +YSK G +   
Sbjct: 295 DEFTFTSLLSACANAGFFLHGKSVHGQFIRLQPDFVPEAALPVNNALVTLYSKSGKIAVA 354

Query: 372 RQVFDLTDNKE----NSML--------------------------WNTMISALTQHGYDE 401
            ++FD    K+    N++L                          W  M+S     G  E
Sbjct: 355 TKIFDSMTLKDVVSWNTILSGYIESGCLDNAARIFKEMPYKSELSWMVMVSGYVHGGLAE 414

Query: 402 QAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACL 461
            A++LF+ M    VKP   T A  + AC   G ++ G      +    G   +      L
Sbjct: 415 DALKLFNQMRSEDVKPCDYTYAGAVAACGELGALKHGKQLHAHLVQ-CGFEASNSAGNAL 473

Query: 462 IELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQN 517
           + + A+ G           MP   DS  WNA+      HG+     ++ DQ++ Q 
Sbjct: 474 LTMYARCGAVKDARLVFLVMP-NVDSVSWNAMISALGQHGHGREALELFDQMVAQG 528


>gi|359491499|ref|XP_003634283.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Vitis vinifera]
          Length = 766

 Score =  384 bits (986), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 190/507 (37%), Positives = 305/507 (60%), Gaps = 9/507 (1%)

Query: 92  NHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVV 151
           N +++ Y + G   DAR++F+      L S+N M+ GY     +  AR +FD M ERD V
Sbjct: 177 NGMLAAYVQNGRIEDARRLFESKADWELISWNCMMGGYVKRNRLVDARGIFDRMPERDEV 236

Query: 152 SWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQV 211
           SWNTMI GYA++G + E  + ++     S   + F++  +++  V+   L   R+V   +
Sbjct: 237 SWNTMISGYAQNGELLEAQRLFEE----SPVRDVFTWTAMVSGYVQNGMLDEARRVFDGM 292

Query: 212 LVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESAS 271
                  N V  ++I+  Y +C  +  AR LF+    ++V +W TM++GYA+ GD+  A 
Sbjct: 293 PE----KNSVSWNAIIAGYVQCKRMDQARELFEAMPCQNVSSWNTMITGYAQNGDIAQAR 348

Query: 272 KLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIV 331
             F+ MP+++ +SW  +IAGY ++G G++AL LF  M     R N+ TF+S L  CA I 
Sbjct: 349 NFFDRMPQRDSISWAAIIAGYAQSGYGEEALHLFVEMKRDGERLNRSTFTSTLSTCAEIA 408

Query: 332 SLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMI 391
           +L+ GKQVHG +++    S   V ++L+ MY KCG ++D   VF+  + KE  + WNTMI
Sbjct: 409 ALELGKQVHGRVVKAGLESGCYVGNALLVMYCKCGNIDDAYIVFEGIEEKE-VVSWNTMI 467

Query: 392 SALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGI 451
           +   +HG+ ++A+ LF  M ++ + PD +T+  +L+AC+H+GLV +G  YF SMT D GI
Sbjct: 468 AGYARHGFGKEALMLFESMKKTGILPDDVTMVGVLSACSHTGLVDKGTEYFYSMTQDYGI 527

Query: 452 IPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVD 511
             N +H+ C+I+LL +AG  D   N ++ MP+E D+  W AL G  RIHGN ++G K   
Sbjct: 528 TANSKHYTCMIDLLGRAGRLDDAQNLMKNMPFEPDAATWGALLGASRIHGNTELGEKAAK 587

Query: 512 QLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFS 571
            + +  P +S  + LLS++Y+A G+   V ++R  + +R  KK    SW+E++NK+H F+
Sbjct: 588 MIFEMEPDNSGMYVLLSNLYAASGRWGDVGRMRLRMRDRGVKKVPGYSWVEVQNKIHTFT 647

Query: 572 VSDSLHPMRDVLYSVLEQLAGQMGEDA 598
           V DS+HP RD +Y+ LE+L  +M ++ 
Sbjct: 648 VGDSVHPERDRIYTFLEELDLKMKKEG 674



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 113/439 (25%), Positives = 185/439 (42%), Gaps = 70/439 (15%)

Query: 149 DVVSWNTMIIGYAKSGAVEEGLKFYKVL-RRFSISCNEFSFAGILTICVKLEELKLTRQV 207
           D+V WN  I  + ++G  +  L+ +  + RR SIS N      +++ C+  ++  L RQ+
Sbjct: 48  DIVKWNIAITNHMRNGQCDSALRLFNSMPRRSSISWN-----AMISGCLSNDKFYLARQL 102

Query: 208 HGQVLVTGFLS-NVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGD 266
             ++     +S NV+IS  +     +   L  AR LFD+   RDV++W  M+SGYA+ G 
Sbjct: 103 FEKMPTRDLVSWNVMISGCV-----RYRNLRAARLLFDQMPERDVVSWNAMLSGYAQNGY 157

Query: 267 MESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCA 326
           ++ A ++F+EMP KN +SW  ++A Y +NG  + A  LF       +             
Sbjct: 158 VKEAKEIFDEMPCKNSISWNGMLAAYVQNGRIEDARRLFESKADWEL------------- 204

Query: 327 CASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSML 386
                                     I  + ++  Y K   L D R +FD    ++  + 
Sbjct: 205 --------------------------ISWNCMMGGYVKRNRLVDARGIFDRMPERD-EVS 237

Query: 387 WNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMT 446
           WNTMIS   Q+G   +A RLF +   S V+ D  T   +++    +G++ E    F+ M 
Sbjct: 238 WNTMISGYAQNGELLEAQRLFEE---SPVR-DVFTWTAMVSGYVQNGMLDEARRVFDGMP 293

Query: 447 HDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMG 506
               +  N      +I    Q    DQ     E MP ++ S  WN +      +G+I   
Sbjct: 294 EKNSVSWN-----AIIAGYVQCKRMDQARELFEAMPCQNVSS-WNTMITGYAQNGDIAQA 347

Query: 507 RKVVDQLIDQNPQSSAT--HGLLSSIYSALGKGRLVEKVR--QLINERQFKKE----QAI 558
           R   D++  ++  S A    G   S Y        VE  R  + +N   F         I
Sbjct: 348 RNFFDRMPQRDSISWAAIIAGYAQSGYGEEALHLFVEMKRDGERLNRSTFTSTLSTCAEI 407

Query: 559 SWIEIENKVHAFSVSDSLH 577
           + +E+  +VH   V   L 
Sbjct: 408 AALELGKQVHGRVVKAGLE 426



 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 76/304 (25%), Positives = 128/304 (42%), Gaps = 52/304 (17%)

Query: 4   NFSPRGINRKNLPNNCLIQSFLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCA 63
           NF  R   R ++    +I  +      G   EA+     + + G RL   T    L  CA
Sbjct: 349 NFFDRMPQRDSISWAAIIAGY---AQSGYGEEALHLFVEMKRDGERLNRSTFTSTLSTCA 405

Query: 64  ESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYN 123
           E  +L+LGK+VH  +     ++   ++ N L+ MY KCG+  DA  VF+ I  K + S+N
Sbjct: 406 EIAALELGKQVHGRVVKAGLES-GCYVGNALLVMYCKCGNIDDAYIVFEGIEEKEVVSWN 464

Query: 124 NMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGY----AKSGAVEEGLK-FYKVLRR 178
            M++GYA  G  K A  LF++M +  ++  +  ++G     + +G V++G + FY + + 
Sbjct: 465 TMIAGYARHGFGKEALMLFESMKKTGILPDDVTMVGVLSACSHTGLVDKGTEYFYSMTQD 524

Query: 179 FSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSD 238
           + I+ N   +                                   + ++D   + G L D
Sbjct: 525 YGITANSKHY-----------------------------------TCMIDLLGRAGRLDD 549

Query: 239 ARRLFDETDAR-DVLTWTTM-----VSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGY 292
           A+ L        D  TW  +     + G  +LG  E A+K+  EM   N   +  L   Y
Sbjct: 550 AQNLMKNMPFEPDAATWGALLGASRIHGNTELG--EKAAKMIFEMEPDNSGMYVLLSNLY 607

Query: 293 TRNG 296
             +G
Sbjct: 608 AASG 611



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 65/277 (23%), Positives = 124/277 (44%), Gaps = 24/277 (8%)

Query: 246 TDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELF 305
           TDA D++ W   ++ + + G  +SA +LFN MP ++ +SW  +I+G   N     A +LF
Sbjct: 45  TDA-DIVKWNIAITNHMRNGQCDSALRLFNSMPRRSSISWNAMISGCLSNDKFYLARQLF 103

Query: 306 TRMMILRIRPNQH--TFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYS 363
            +M      P +   +++  +  C    +L+  +     L       + +  ++++  Y+
Sbjct: 104 EKM------PTRDLVSWNVMISGCVRYRNLRAAR----LLFDQMPERDVVSWNAMLSGYA 153

Query: 364 KCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLA 423
           + G + + +++FD    K NS+ WN M++A  Q+G  E A RLF     S    + I+  
Sbjct: 154 QNGYVKEAKEIFDEMPCK-NSISWNGMLAAYVQNGRIEDARRLFE----SKADWELISWN 208

Query: 424 VILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPY 483
            ++        + +    F+ M     +  N      +I   AQ G   +     E+ P 
Sbjct: 209 CMMGGYVKRNRLVDARGIFDRMPERDEVSWN-----TMISGYAQNGELLEAQRLFEESPV 263

Query: 484 EHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQS 520
             D + W A+      +G +D  R+V D + ++N  S
Sbjct: 264 -RDVFTWTAMVSGYVQNGMLDEARRVFDGMPEKNSVS 299


>gi|297734304|emb|CBI15551.3| unnamed protein product [Vitis vinifera]
          Length = 685

 Score =  383 bits (984), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 190/507 (37%), Positives = 305/507 (60%), Gaps = 9/507 (1%)

Query: 92  NHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVV 151
           N +++ Y + G   DAR++F+      L S+N M+ GY     +  AR +FD M ERD V
Sbjct: 96  NGMLAAYVQNGRIEDARRLFESKADWELISWNCMMGGYVKRNRLVDARGIFDRMPERDEV 155

Query: 152 SWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQV 211
           SWNTMI GYA++G + E  + ++     S   + F++  +++  V+   L   R+V   +
Sbjct: 156 SWNTMISGYAQNGELLEAQRLFEE----SPVRDVFTWTAMVSGYVQNGMLDEARRVFDGM 211

Query: 212 LVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESAS 271
                  N V  ++I+  Y +C  +  AR LF+    ++V +W TM++GYA+ GD+  A 
Sbjct: 212 PE----KNSVSWNAIIAGYVQCKRMDQARELFEAMPCQNVSSWNTMITGYAQNGDIAQAR 267

Query: 272 KLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIV 331
             F+ MP+++ +SW  +IAGY ++G G++AL LF  M     R N+ TF+S L  CA I 
Sbjct: 268 NFFDRMPQRDSISWAAIIAGYAQSGYGEEALHLFVEMKRDGERLNRSTFTSTLSTCAEIA 327

Query: 332 SLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMI 391
           +L+ GKQVHG +++    S   V ++L+ MY KCG ++D   VF+  + KE  + WNTMI
Sbjct: 328 ALELGKQVHGRVVKAGLESGCYVGNALLVMYCKCGNIDDAYIVFEGIEEKE-VVSWNTMI 386

Query: 392 SALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGI 451
           +   +HG+ ++A+ LF  M ++ + PD +T+  +L+AC+H+GLV +G  YF SMT D GI
Sbjct: 387 AGYARHGFGKEALMLFESMKKTGILPDDVTMVGVLSACSHTGLVDKGTEYFYSMTQDYGI 446

Query: 452 IPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVD 511
             N +H+ C+I+LL +AG  D   N ++ MP+E D+  W AL G  RIHGN ++G K   
Sbjct: 447 TANSKHYTCMIDLLGRAGRLDDAQNLMKNMPFEPDAATWGALLGASRIHGNTELGEKAAK 506

Query: 512 QLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFS 571
            + +  P +S  + LLS++Y+A G+   V ++R  + +R  KK    SW+E++NK+H F+
Sbjct: 507 MIFEMEPDNSGMYVLLSNLYAASGRWGDVGRMRLRMRDRGVKKVPGYSWVEVQNKIHTFT 566

Query: 572 VSDSLHPMRDVLYSVLEQLAGQMGEDA 598
           V DS+HP RD +Y+ LE+L  +M ++ 
Sbjct: 567 VGDSVHPERDRIYTFLEELDLKMKKEG 593



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 103/374 (27%), Positives = 166/374 (44%), Gaps = 58/374 (15%)

Query: 135 MKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISC-NEFSFAGILT 193
           ++ AR LFD M ERDVVSWN M+ GYA++G V+E  + +       + C N  S+ G+L 
Sbjct: 46  LRAARLLFDQMPERDVVSWNAMLSGYAQNGYVKEAKEIFD-----EMPCKNSISWNGMLA 100

Query: 194 ICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLT 253
                                              AY + G + DARRLF+     ++++
Sbjct: 101 -----------------------------------AYVQNGRIEDARRLFESKADWELIS 125

Query: 254 WTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRI 313
           W  M+ GY K   +  A  +F+ MPE++ VSW T+I+GY +NG   +A  LF    +  +
Sbjct: 126 WNCMMGGYVKRNRLVDARGIFDRMPERDEVSWNTMISGYAQNGELLEAQRLFEESPVRDV 185

Query: 314 RPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQ 373
                T+++ +        L   ++V   +       N++  +++I  Y +C  ++  R+
Sbjct: 186 ----FTWTAMVSGYVQNGMLDEARRVFDGMP----EKNSVSWNAIIAGYVQCKRMDQARE 237

Query: 374 VFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSG 433
           +F+     +N   WNTMI+   Q+G   QA   F  M +     D I+ A I+     SG
Sbjct: 238 LFEAMPC-QNVSSWNTMITGYAQNGDIAQARNFFDRMPQR----DSISWAAIIAGYAQSG 292

Query: 434 LVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGC---SDQLMNQLEKMPYEHDSYLW 490
             +E L  F  M  D G   N+      +   A+        Q+  ++ K   E   Y+ 
Sbjct: 293 YGEEALHLFVEMKRD-GERLNRSTFTSTLSTCAEIAALELGKQVHGRVVKAGLESGCYVG 351

Query: 491 NALHGVCRIHGNID 504
           NAL  +    GNID
Sbjct: 352 NALLVMYCKCGNID 365



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 76/304 (25%), Positives = 128/304 (42%), Gaps = 52/304 (17%)

Query: 4   NFSPRGINRKNLPNNCLIQSFLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCA 63
           NF  R   R ++    +I  +      G   EA+     + + G RL   T    L  CA
Sbjct: 268 NFFDRMPQRDSISWAAIIAGY---AQSGYGEEALHLFVEMKRDGERLNRSTFTSTLSTCA 324

Query: 64  ESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYN 123
           E  +L+LGK+VH  +     ++   ++ N L+ MY KCG+  DA  VF+ I  K + S+N
Sbjct: 325 EIAALELGKQVHGRVVKAGLES-GCYVGNALLVMYCKCGNIDDAYIVFEGIEEKEVVSWN 383

Query: 124 NMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGY----AKSGAVEEGLK-FYKVLRR 178
            M++GYA  G  K A  LF++M +  ++  +  ++G     + +G V++G + FY + + 
Sbjct: 384 TMIAGYARHGFGKEALMLFESMKKTGILPDDVTMVGVLSACSHTGLVDKGTEYFYSMTQD 443

Query: 179 FSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSD 238
           + I+ N   +                                   + ++D   + G L D
Sbjct: 444 YGITANSKHY-----------------------------------TCMIDLLGRAGRLDD 468

Query: 239 ARRLFDETDAR-DVLTWTTM-----VSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGY 292
           A+ L        D  TW  +     + G  +LG  E A+K+  EM   N   +  L   Y
Sbjct: 469 AQNLMKNMPFEPDAATWGALLGASRIHGNTELG--EKAAKMIFEMEPDNSGMYVLLSNLY 526

Query: 293 TRNG 296
             +G
Sbjct: 527 AASG 530


>gi|449470104|ref|XP_004152758.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Cucumis sativus]
 gi|449504088|ref|XP_004162249.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Cucumis sativus]
          Length = 797

 Score =  383 bits (983), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 184/516 (35%), Positives = 308/516 (59%), Gaps = 14/516 (2%)

Query: 92  NHLISMYFKCGSD---------VDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLF 142
           N L+S+Y KC S            ARK+FD++P +N F +  +++GY   G +  AR + 
Sbjct: 187 NALLSVYVKCASSPLVSSSSLMASARKLFDEMPKRNEFIWTTLITGYVRNGDLTGAREIL 246

Query: 143 DNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELK 202
           D M E+  ++WN MI GY   G  E+ L  ++ +R   +  +E ++  +++ C       
Sbjct: 247 DTMTEQPGIAWNAMISGYLHHGLFEDALTLFRKMRLLGVQVDESTYTSVISACADGGFFL 306

Query: 203 LTRQVHGQVLVTGFLSN----VVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMV 258
           L +QVH  +L      +    + + ++++  Y K G++  AR++F E   +D++TW T++
Sbjct: 307 LGKQVHAYILKNELNPDRDFLLSVGNTLITLYWKYGKVDGARKIFYEMPVKDIITWNTLL 366

Query: 259 SGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQH 318
           SGY   G ME A   F +MPEKN ++WT +I+G  +NG G++AL+LF +M +    PN +
Sbjct: 367 SGYVNAGRMEEAKSFFAQMPEKNLLTWTVMISGLAQNGFGEQALKLFNQMKLDGYEPNDY 426

Query: 319 TFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLT 378
            F+  + AC+ + +L++G+Q+H  ++     S   V +++I MY++CG +   R +F LT
Sbjct: 427 AFAGAITACSVLGALENGRQLHAQIVHLGHDSTLSVGNAMITMYARCGIVEAARTMF-LT 485

Query: 379 DNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEG 438
               + + WN+MI+AL QHG+  +AI L+  M++  + PD+ T   +L+AC+H+GLV+EG
Sbjct: 486 MPFVDPVSWNSMIAALGQHGHGVKAIELYEQMLKEGILPDRRTFLTVLSACSHAGLVEEG 545

Query: 439 LTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCR 498
             YF SM  + GI P ++H+A +I+L  +AG      N ++ MP+E  + +W AL   CR
Sbjct: 546 NRYFNSMLENYGIAPGEDHYARMIDLFCRAGKFSDAKNVIDSMPFEARAPIWEALLAGCR 605

Query: 499 IHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAI 558
            HGN+D+G +  ++L    PQ   T+ LLS++Y++LG+   V + R+L+ +R  KKE A 
Sbjct: 606 THGNMDLGIEAAEKLFKLIPQHDGTYVLLSNMYASLGRWNDVARTRKLMRDRGVKKEPAC 665

Query: 559 SWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQM 594
           SW E+ENKVH F V D++HP    +Y+ LE+L  +M
Sbjct: 666 SWTEVENKVHVFLVDDTVHPEVLSIYNYLEKLNLEM 701



 Score =  202 bits (513), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 137/528 (25%), Positives = 253/528 (47%), Gaps = 51/528 (9%)

Query: 67  SLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNML 126
           S  L + VH H+  +  K     + N LI +Y+K    V ARK+FD+IP  ++ +   ++
Sbjct: 28  SYSLARTVHGHVIASGFKL-RGHIVNRLIDIYWKSSDFVYARKLFDEIPQPDVIARTTLI 86

Query: 127 SGYANLGMMKHARNLFDN--MAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCN 184
           + Y+ LG +K AR +F+   +  RD V +N MI GY+        ++ ++ +R  +   +
Sbjct: 87  TAYSALGNLKMAREIFNETPLDMRDTVFYNAMITGYSHMNDGHSAIELFRAMRWANFQPD 146

Query: 185 EFSFAGILTI-CVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCG--------- 234
           +F+FA +L+   +   + +   Q+HG V+  G      + ++++  Y KC          
Sbjct: 147 DFTFASVLSASTLIFYDERQCGQMHGTVVKFGIEIFPAVLNALLSVYVKCASSPLVSSSS 206

Query: 235 ELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTR 294
            ++ AR+LFDE   R+   WTT+++GY + GD+  A ++ + M E+  ++W  +I+GY  
Sbjct: 207 LMASARKLFDEMPKRNEFIWTTLITGYVRNGDLTGAREILDTMTEQPGIAWNAMISGYLH 266

Query: 295 NGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNT-- 352
           +GL + AL LF +M +L ++ ++ T++S + ACA       GKQVH ++++     +   
Sbjct: 267 HGLFEDALTLFRKMRLLGVQVDESTYTSVISACADGGFFLLGKQVHAYILKNELNPDRDF 326

Query: 353 --IVMSSLIDMYSKCGCLNDGRQVFD-------LTDN----------------------- 380
              V ++LI +Y K G ++  R++F        +T N                       
Sbjct: 327 LLSVGNTLITLYWKYGKVDGARKIFYEMPVKDIITWNTLLSGYVNAGRMEEAKSFFAQMP 386

Query: 381 KENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLT 440
           ++N + W  MIS L Q+G+ EQA++LF+ M     +P+    A  + AC+  G ++ G  
Sbjct: 387 EKNLLTWTVMISGLAQNGFGEQALKLFNQMKLDGYEPNDYAFAGAITACSVLGALENGRQ 446

Query: 441 YFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIH 500
               + H LG          +I + A+ G  +        MP+  D   WN++      H
Sbjct: 447 LHAQIVH-LGHDSTLSVGNAMITMYARCGIVEAARTMFLTMPFV-DPVSWNSMIAALGQH 504

Query: 501 GNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLIN 548
           G+     ++ +Q++ +         L  ++ SA     LVE+  +  N
Sbjct: 505 GHGVKAIELYEQMLKEGILPDRRTFL--TVLSACSHAGLVEEGNRYFN 550



 Score =  171 bits (433), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 101/385 (26%), Positives = 189/385 (49%), Gaps = 38/385 (9%)

Query: 18  NCLIQSFLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLH 77
           N +I  +L     G   +A++    +   G+++   T   ++  CA+     LGK+VH +
Sbjct: 258 NAMISGYLH---HGLFEDALTLFRKMRLLGVQVDESTYTSVISACADGGFFLLGKQVHAY 314

Query: 78  LKLTQRKTPTTFL---SNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGM 134
           +   +      FL    N LI++Y+K G    ARK+F ++PVK++ ++N +LSGY N G 
Sbjct: 315 ILKNELNPDRDFLLSVGNTLITLYWKYGKVDGARKIFYEMPVKDIITWNTLLSGYVNAGR 374

Query: 135 MKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTI 194
           M+ A++ F  M E+++++W  MI G A++G  E+ LK +  ++      N+++FAG +T 
Sbjct: 375 MEEAKSFFAQMPEKNLLTWTVMISGLAQNGFGEQALKLFNQMKLDGYEPNDYAFAGAITA 434

Query: 195 CVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTW 254
           C  L  L+  RQ+H Q++  G  S + + ++++  YA+CG +  AR +F      D ++W
Sbjct: 435 CSVLGALENGRQLHAQIVHLGHDSTLSVGNAMITMYARCGIVEAARTMFLTMPFVDPVSW 494

Query: 255 TTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIR 314
            +M                               IA   ++G G KA+EL+ +M+   I 
Sbjct: 495 NSM-------------------------------IAALGQHGHGVKAIELYEQMLKEGIL 523

Query: 315 PNQHTFSSCLCACASIVSLKHG-KQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQ 373
           P++ TF + L AC+    ++ G +  +  L            + +ID++ + G  +D + 
Sbjct: 524 PDRRTFLTVLSACSHAGLVEEGNRYFNSMLENYGIAPGEDHYARMIDLFCRAGKFSDAKN 583

Query: 374 VFDLTDNKENSMLWNTMISALTQHG 398
           V D    +  + +W  +++    HG
Sbjct: 584 VIDSMPFEARAPIWEALLAGCRTHG 608



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 104/408 (25%), Positives = 173/408 (42%), Gaps = 60/408 (14%)

Query: 192 LTICV--KLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDAR 249
           L +C    L    L R VHG V+ +GF     I + ++D Y K  +   AR+LFDE    
Sbjct: 18  LNLCCPQNLSSYSLARTVHGHVIASGFKLRGHIVNRLIDIYWKSSDFVYARKLFDEIPQP 77

Query: 250 DVLTWTTMVSGYAKLGDMESASKLFNEMP--EKNPVSWTTLIAGYTRNGLGQKALELFTR 307
           DV+  TT+++ Y+ LG+++ A ++FNE P   ++ V +  +I GY+    G  A+ELF  
Sbjct: 78  DVIARTTLITAYSALGNLKMAREIFNETPLDMRDTVFYNAMITGYSHMNDGHSAIELFRA 137

Query: 308 MMILRIRPNQHTFSSCLCACASIV-SLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKC- 365
           M     +P+  TF+S L A   I    +   Q+HG +++        V+++L+ +Y KC 
Sbjct: 138 MRWANFQPDDFTFASVLSASTLIFYDERQCGQMHGTVVKFGIEIFPAVLNALLSVYVKCA 197

Query: 366 ---------------------------------------GCLNDGRQVFDLTDNKENSML 386
                                                  G L   R++ D T  ++  + 
Sbjct: 198 SSPLVSSSSLMASARKLFDEMPKRNEFIWTTLITGYVRNGDLTGAREILD-TMTEQPGIA 256

Query: 387 WNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMT 446
           WN MIS    HG  E A+ LF  M    V+ D+ T   +++AC   G    G      + 
Sbjct: 257 WNAMISGYLHHGLFEDALTLFRKMRLLGVQVDESTYTSVISACADGGFFLLGKQVHAYIL 316

Query: 447 HDLGIIPNQEH----HACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGN 502
            +  + P+++        LI L  + G  D       +MP + D   WN L     + G 
Sbjct: 317 KN-ELNPDRDFLLSVGNTLITLYWKYGKVDGARKIFYEMPVK-DIITWNTL-----LSGY 369

Query: 503 IDMGR-KVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINE 549
           ++ GR +       Q P+ +      + + S L +    E+  +L N+
Sbjct: 370 VNAGRMEEAKSFFAQMPEKNLL--TWTVMISGLAQNGFGEQALKLFNQ 415


>gi|356502620|ref|XP_003520116.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Glycine max]
          Length = 785

 Score =  383 bits (983), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 196/564 (34%), Positives = 328/564 (58%), Gaps = 6/564 (1%)

Query: 31  GQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVH-LHLKLTQRKTPTTF 89
           G    A+ +   +   GI     T   +L  CA +++L +GK+VH   +KL Q  +    
Sbjct: 124 GLFKSAVHAFLRMVSSGISPTQFTFTNVLASCAAAQALDVGKKVHSFVVKLGQ--SGVVP 181

Query: 90  LSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERD 149
           ++N L++MY KCG  V A+ VFD++ +K+  ++N M+S +        A  LFD M + D
Sbjct: 182 VANSLLNMYAKCGDSVMAKVVFDRMRLKDTSTWNTMISMHMQFCQFDLALALFDQMTDPD 241

Query: 150 VVSWNTMIIGYAKSGAVEEGLK-FYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVH 208
           +VSWN++I GY   G     L+ F  +L+  S+  ++F+   +L+ C   E LKL +Q+H
Sbjct: 242 IVSWNSIITGYCHQGYDIRALETFSFMLKSSSLKPDKFTLGSVLSACANRESLKLGKQIH 301

Query: 209 GQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFD--ETDARDVLTWTTMVSGYAKLGD 266
             ++         + ++++  YAK G +  A R+ +   T + +V+ +T+++ GY K+GD
Sbjct: 302 AHIVRADVDIAGAVGNALISMYAKSGAVEVAHRIVEITGTPSLNVIAFTSLLDGYFKIGD 361

Query: 267 MESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCA 326
           ++ A  +F+ +  ++ V+WT +I GY +NGL   AL LF  M+    +PN +T ++ L  
Sbjct: 362 IDPARAIFDSLKHRDVVAWTAMIVGYAQNGLISDALVLFRLMIREGPKPNNYTLAAVLSV 421

Query: 327 CASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSML 386
            +S+ SL HGKQ+H   IR    S+  V ++LI MYS+ G + D R++F+   +  +++ 
Sbjct: 422 ISSLASLDHGKQLHAVAIRLEEVSSVSVGNALITMYSRSGSIKDARKIFNHICSYRDTLT 481

Query: 387 WNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMT 446
           W +MI +L QHG   +AI LF  M+R ++KPD IT   +L+ACTH GLV++G +YF  M 
Sbjct: 482 WTSMILSLAQHGLGNEAIELFEKMLRINLKPDHITYVGVLSACTHVGLVEQGKSYFNLMK 541

Query: 447 HDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMG 506
           +   I P   H+AC+I+LL +AG  ++  N +  MP E D   W +L   CR+H  +D+ 
Sbjct: 542 NVHNIEPTSSHYACMIDLLGRAGLLEEAYNFIRNMPIEPDVVAWGSLLSSCRVHKYVDLA 601

Query: 507 RKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENK 566
           +   ++L+  +P +S  +  L++  SA GK     KVR+ + ++  KKEQ  SW++I+NK
Sbjct: 602 KVAAEKLLLIDPNNSGAYLALANTLSACGKWEDAAKVRKSMKDKAVKKEQGFSWVQIKNK 661

Query: 567 VHAFSVSDSLHPMRDVLYSVLEQL 590
           VH F V D+LHP RD +Y ++ ++
Sbjct: 662 VHIFGVEDALHPQRDAIYCMISKI 685



 Score =  221 bits (564), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 126/415 (30%), Positives = 213/415 (51%), Gaps = 35/415 (8%)

Query: 58  ILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVK 117
           +LQ   +S+   +G+ +H  +     +    FL+N+L+++Y K GS  DA ++FD++P+K
Sbjct: 18  LLQSAIKSRDPFIGRCIHARIIKHGLRYLGVFLTNNLLNLYVKTGSSSDAHRLFDEMPLK 77

Query: 118 NLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLR 177
             FS+N +LS +A  G +  AR +FD + + D VSW TMI+GY   G  +  +  +  + 
Sbjct: 78  TTFSWNTILSAHAKAGNLDSARRVFDEIPQPDSVSWTTMIVGYNHLGLFKSAVHAFLRMV 137

Query: 178 RFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELS 237
              IS  +F+F  +L  C   + L + ++VH  V+  G    V +++S+++ YAKCG+  
Sbjct: 138 SSGISPTQFTFTNVLASCAAAQALDVGKKVHSFVVKLGQSGVVPVANSLLNMYAKCGDSV 197

Query: 238 DARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGL 297
            A+ +FD    +D  TW TM+S + +    + A  LF++M + + VSW ++I GY   G 
Sbjct: 198 MAKVVFDRMRLKDTSTWNTMISMHMQFCQFDLALALFDQMTDPDIVSWNSIITGYCHQGY 257

Query: 298 GQKALELFTRMM-ILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNF-------- 348
             +ALE F+ M+    ++P++ T  S L ACA+  SLK GKQ+H  ++R +         
Sbjct: 258 DIRALETFSFMLKSSSLKPDKFTLGSVLSACANRESLKLGKQIHAHIVRADVDIAGAVGN 317

Query: 349 -------------------------RSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKEN 383
                                      N I  +SL+D Y K G ++  R +FD   +++ 
Sbjct: 318 ALISMYAKSGAVEVAHRIVEITGTPSLNVIAFTSLLDGYFKIGDIDPARAIFDSLKHRD- 376

Query: 384 SMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEG 438
            + W  MI    Q+G    A+ LF  M+R   KP+  TLA +L+  +    +  G
Sbjct: 377 VVAWTAMIVGYAQNGLISDALVLFRLMIREGPKPNNYTLAAVLSVISSLASLDHG 431


>gi|224143620|ref|XP_002325018.1| predicted protein [Populus trichocarpa]
 gi|222866452|gb|EEF03583.1| predicted protein [Populus trichocarpa]
          Length = 695

 Score =  376 bits (966), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 204/605 (33%), Positives = 331/605 (54%), Gaps = 44/605 (7%)

Query: 29  SKGQLSEAISSLDLLAQRGIRLPA--ETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTP 86
           SK +L +AI   D L   G   PA  E    +  +C  +  +   KR+  H+ L   K  
Sbjct: 3   SKLKLRQAI---DTLYTNG---PASHECYTRLALECFRASDVDQAKRLKSHMHLHLFKPN 56

Query: 87  TTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMA 146
            TF+ N L+++Y K G    ARK+FD++  ++ FS+N MLS YA  G+++  R +FDNM 
Sbjct: 57  DTFIHNRLLNLYAKSGEISHARKLFDEMTQRDNFSWNAMLSLYAKSGLVEDLRVIFDNMP 116

Query: 147 ERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQ 206
            RD VS+NT+I G+A +G     L  +  +++  +   E++   +L  C +L +L+  +Q
Sbjct: 117 SRDSVSYNTVISGFAGNGRGGPALGVFLRMQKEGLKPTEYTHVSVLNACTQLLDLRRGKQ 176

Query: 207 VHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAK--- 263
           +HG++++     NV + +++ D YA+CGE+  ARRLFD    R+V+TW  M+SGY K   
Sbjct: 177 IHGRIIICNLGGNVFVCNALTDLYARCGEIDQARRLFDRMVIRNVVTWNLMISGYLKNRQ 236

Query: 264 --------------------------------LGDMESASKLFNEMPEKNPVSWTTLIAG 291
                                            G ++ A K+F E+ EK+ V WT +I G
Sbjct: 237 PEKCIDLFHEMQVSNLKPDQVTASSVLGAYIQAGYIDEARKVFGEIREKDEVCWTIMIVG 296

Query: 292 YTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSN 351
             +NG  + AL LF+ M++   RP+ +T SS + +CA + SL HG+ VHG         +
Sbjct: 297 CAQNGKEEDALLLFSEMLLENARPDGYTISSVVSSCAKLASLYHGQVVHGKAFLMGVNDD 356

Query: 352 TIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMV 411
            +V S+L+DMY KCG   D   +F  T    N + WN+MI     +G D +A+ L+ +M+
Sbjct: 357 LLVSSALVDMYCKCGVTRDAWTIFS-TMQTRNVVSWNSMIGGYALNGQDLEALSLYENML 415

Query: 412 RSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCS 471
             ++KPD +T   +L+AC H+GLV+EG  YF SM+   G+ P  +H+AC++ L  ++G  
Sbjct: 416 EENLKPDSVTFVGVLSACVHAGLVEEGKEYFCSMSDQHGLEPTPDHYACMVNLFGRSGHM 475

Query: 472 DQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIY 531
           D+ ++ +  M  E +S +W  +  VC + G+I  G      LI+ NP ++  + +LS++Y
Sbjct: 476 DKAVDLISSMSQEPNSLIWTTVLSVCVMKGDIKHGEMAARCLIELNPFNAVPYIMLSNMY 535

Query: 532 SALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLA 591
           +A G+ + V  +R L+  +  KK  A SWIEI+N+VH F   D  HP   +++  L +L 
Sbjct: 536 AARGRWKDVASIRSLMKSKHVKKFSAYSWIEIDNEVHKFVADDRTHPDAKIIHVQLNRLI 595

Query: 592 GQMGE 596
            ++ E
Sbjct: 596 RKLQE 600



 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 96/430 (22%), Positives = 185/430 (43%), Gaps = 83/430 (19%)

Query: 11  NRKNLPNNCLIQSFLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKL 70
           +R ++  N +I  F      G+   A+     + + G++    T   +L  C +   L+ 
Sbjct: 117 SRDSVSYNTVISGF---AGNGRGGPALGVFLRMQKEGLKPTEYTHVSVLNACTQLLDLRR 173

Query: 71  GKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGY- 129
           GK++H  + +        F+ N L  +Y +CG    AR++FD++ ++N+ ++N M+SGY 
Sbjct: 174 GKQIHGRIIICNLGG-NVFVCNALTDLYARCGEIDQARRLFDRMVIRNVVTWNLMISGYL 232

Query: 130 -----------------ANL-----------------GMMKHARNLFDNMAERDVVSWNT 155
                            +NL                 G +  AR +F  + E+D V W  
Sbjct: 233 KNRQPEKCIDLFHEMQVSNLKPDQVTASSVLGAYIQAGYIDEARKVFGEIREKDEVCWTI 292

Query: 156 MIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTG 215
           MI+G A++G  E+ L  +  +   +   + ++ + +++ C KL  L   + VHG+  + G
Sbjct: 293 MIVGCAQNGKEEDALLLFSEMLLENARPDGYTISSVVSSCAKLASLYHGQVVHGKAFLMG 352

Query: 216 FLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFN 275
              ++++SS++VD Y KCG   DA  +F     R+V++W +M+ GYA             
Sbjct: 353 VNDDLLVSSALVDMYCKCGVTRDAWTIFSTMQTRNVVSWNSMIGGYA------------- 399

Query: 276 EMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKH 335
                              NG   +AL L+  M+   ++P+  TF   L AC     ++ 
Sbjct: 400 ------------------LNGQDLEALSLYENMLEENLKPDSVTFVGVLSACVHAGLVEE 441

Query: 336 GKQV-------HGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWN 388
           GK+        HG     +        + +++++ + G ++    +      + NS++W 
Sbjct: 442 GKEYFCSMSDQHGLEPTPDH------YACMVNLFGRSGHMDKAVDLISSMSQEPNSLIWT 495

Query: 389 TMISALTQHG 398
           T++S     G
Sbjct: 496 TVLSVCVMKG 505


>gi|225425182|ref|XP_002264325.1| PREDICTED: pentatricopeptide repeat-containing protein At2g13600
           [Vitis vinifera]
          Length = 684

 Score =  376 bits (965), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 201/587 (34%), Positives = 334/587 (56%), Gaps = 42/587 (7%)

Query: 16  PNNCLIQSFLSLISK-GQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRV 74
           P+ C   S +S  ++  +  E++     + +    L   +    L  CA    L +G +V
Sbjct: 110 PDQCSWNSMVSGFAQHDRFEESLEYFVKMHREDFLLNEYSFGSALSACAGLMDLNMGTQV 169

Query: 75  HLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGM 134
           H  L    R +   ++ + LI MY KCGS   A +VF                       
Sbjct: 170 HA-LVSKSRYSTDVYMGSALIDMYSKCGSVACAEEVFS---------------------- 206

Query: 135 MKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTI 194
                     M ER++V+WN++I  Y ++G   E L+ +  +    +  +E + A +++ 
Sbjct: 207 ---------GMIERNLVTWNSLITCYEQNGPASEALEVFVRMMDSGLEPDEVTLASVVSA 257

Query: 195 CVKLEELKLTRQVHGQVLVTG-FLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLT 253
           C  L  LK   Q+H +V+ T  F  ++V+ +++VD YAKC ++++ARR+FD    R+V++
Sbjct: 258 CASLCALKEGLQIHARVVKTNKFRDDLVLGNALVDMYAKCSKVNEARRVFDRMSIRNVVS 317

Query: 254 WTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRI 313
            T+MVSGYA+   +++A  +F++M ++N VSW  LIAGYT+NG  ++AL LF  +    I
Sbjct: 318 ETSMVSGYARAASVKAARFMFSKMTQRNVVSWNALIAGYTQNGENEEALRLFRLLKRESI 377

Query: 314 RPNQHTFSSCLCACASIVSLKHGKQVH------GFLIRTNFRSNTIVMSSLIDMYSKCGC 367
            P  +TF + L ACA++  L  G+Q H      GF  ++   S+  V +SLIDMY KCG 
Sbjct: 378 WPTHYTFGNLLSACANLADLLLGRQAHTHVLKQGFEFQSGAESDIFVGNSLIDMYMKCGS 437

Query: 368 LNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILN 427
           + DG +VF+    ++  + WN +I    Q+GY  +A+++F  M+    KPD +T+  +L 
Sbjct: 438 IEDGSRVFEKMKERD-CVSWNAIIVGYAQNGYGAEALQIFRKMLVCGEKPDHVTMIGVLC 496

Query: 428 ACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDS 487
           AC+H+GLV+EG  YF SM  + G+IP ++H+ C+++LL +AGC ++  N +E MP   D+
Sbjct: 497 ACSHAGLVEEGRHYFFSM-EEHGLIPLKDHYTCMVDLLGRAGCLNEAKNLIEAMPVNPDA 555

Query: 488 YLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLI 547
            +W +L   C++HGNI+MG+   ++L++ +P +S  + LLS++Y+ LG+   V +VR+L+
Sbjct: 556 VVWGSLLAACKVHGNIEMGKHAAEKLLEIDPWNSGPYVLLSNMYAELGRWGDVVRVRKLM 615

Query: 548 NERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQM 594
            ++   K+   SWIE+E++VH F V D  HP R  +YSVL+ L  QM
Sbjct: 616 RQQGVTKQPGCSWIEVESRVHVFLVKDKSHPHRKQIYSVLKMLTEQM 662



 Score =  234 bits (597), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 146/491 (29%), Positives = 245/491 (49%), Gaps = 82/491 (16%)

Query: 46  RGIRLP-AETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSD 104
           R + LP +   A +L  C  S+S +  + VH  + +TQ  +   F+ N LI +Y KC   
Sbjct: 8   RDLYLPNSSPFAKLLDSCLRSRSARGTRLVHARILMTQF-SMEIFIQNRLIDVYGKCDCL 66

Query: 105 VDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSG 164
            DARK+FD++P +N F++N+++S     G +  A  LF +M E D  SWN+M+ G+A+  
Sbjct: 67  DDARKLFDRMPQRNTFTWNSLISVLTKSGFLDEAARLFGSMPEPDQCSWNSMVSGFAQHD 126

Query: 165 AVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISS 224
             EE L+++  + R     NE+SF   L+ C  L +L +  QVH  V  + + ++V + S
Sbjct: 127 RFEESLEYFVKMHREDFLLNEYSFGSALSACAGLMDLNMGTQVHALVSKSRYSTDVYMGS 186

Query: 225 SIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVS 284
           +++D Y+KCG ++ A  +F     R+++TW +                            
Sbjct: 187 ALIDMYSKCGSVACAEEVFSGMIERNLVTWNS---------------------------- 218

Query: 285 WTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLI 344
              LI  Y +NG   +ALE+F RMM   + P++ T +S + ACAS+ +LK G Q+H  ++
Sbjct: 219 ---LITCYEQNGPASEALEVFVRMMDSGLEPDEVTLASVVSACASLCALKEGLQIHARVV 275

Query: 345 RTN-FRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNK----ENSML------------- 386
           +TN FR + ++ ++L+DMY+KC  +N+ R+VFD    +    E SM+             
Sbjct: 276 KTNKFRDDLVLGNALVDMYAKCSKVNEARRVFDRMSIRNVVSETSMVSGYARAASVKAAR 335

Query: 387 -------------WNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNAC---- 429
                        WN +I+  TQ+G +E+A+RLF  + R S+ P   T   +L+AC    
Sbjct: 336 FMFSKMTQRNVVSWNALIAGYTQNGENEEALRLFRLLKRESIWPTHYTFGNLLSACANLA 395

Query: 430 -------THSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMP 482
                   H+ ++++G  +      D+  + N      LI++  + G  +      EKM 
Sbjct: 396 DLLLGRQAHTHVLKQGFEFQSGAESDI-FVGNS-----LIDMYMKCGSIEDGSRVFEKMK 449

Query: 483 YEHDSYLWNAL 493
            E D   WNA+
Sbjct: 450 -ERDCVSWNAI 459


>gi|359484341|ref|XP_002280538.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Vitis vinifera]
 gi|297738773|emb|CBI28018.3| unnamed protein product [Vitis vinifera]
          Length = 695

 Score =  376 bits (965), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 203/608 (33%), Positives = 337/608 (55%), Gaps = 40/608 (6%)

Query: 32  QLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLS 91
           +L EAI   D L  RG    +E+   +L QC  S  +   KR+  H+ L   +   TFL 
Sbjct: 6   RLREAI---DALYSRGT-ANSESYTRLLLQCVRSNDVVQAKRLQTHMDLHLYQPTDTFLQ 61

Query: 92  NHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVV 151
           N L+ +Y K G+  DAR +FDK+  +++FS+N MLS Y+  G ++  R +FD M+  D V
Sbjct: 62  NRLLHLYAKSGNLSDARDLFDKMSRRDVFSWNAMLSAYSKSGNVEDLRAVFDQMSVHDAV 121

Query: 152 SWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQV 211
           S+NT+I G++ +G   + L+F+  ++       +++   +L  C +L ++K  +Q+HG++
Sbjct: 122 SYNTVIAGFSGNGCSSQALEFFVRMQEEGFESTDYTHVSVLHACSQLLDIKRGKQIHGRI 181

Query: 212 LVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESAS 271
           + T    +V + +++ + YAKCG L  AR LFD    ++V++W +M+SGY + G  E+ +
Sbjct: 182 VATSLGESVFVWNALTNMYAKCGALDQARWLFDRMVNKNVVSWNSMISGYLQNGQPETCT 241

Query: 272 KLFNEM-----------------------------------PEKNPVSWTTLIAGYTRNG 296
           KLF EM                                    EK+ V WTT++ G  +NG
Sbjct: 242 KLFCEMQSSGLMPDQVTISNILSAYFQCGYIDEACKTFREIKEKDKVCWTTMMVGCAQNG 301

Query: 297 LGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMS 356
             + AL LF  M++  +RP+  T SS + +CA + SL  G+ VHG  +      + +V S
Sbjct: 302 KEEDALLLFREMLLENVRPDNFTISSVVSSCARLASLCQGQAVHGKAVIFGVDHDLLVSS 361

Query: 357 SLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVK 416
           +L+DMYSKCG   D   VF     + N + WN+MI    Q+G D +A+ L+ +M+  ++K
Sbjct: 362 ALVDMYSKCGETADAWIVFKRMLTR-NVISWNSMILGYAQNGKDLEALALYEEMLHENLK 420

Query: 417 PDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMN 476
           PD IT   +L+AC H+GLV+ G  YF S++   G+ P  +H++C+I LL +AG  D+ ++
Sbjct: 421 PDNITFVGVLSACMHAGLVERGQGYFYSISKIHGMNPTFDHYSCMINLLGRAGYMDKAVD 480

Query: 477 QLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGK 536
            ++ M +E +  +W+ L  VCRI+ +++ G      L + +P ++  + +LS+IY+A G+
Sbjct: 481 LIKSMTFEPNCLIWSTLLSVCRINCDVNNGEMAARHLFELDPHNAGPYIMLSNIYAACGR 540

Query: 537 GRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQMGE 596
            + V  VR L+   + KK  A SWIEI+N+VH F   D  H   + +Y  L +L  ++ E
Sbjct: 541 WKDVAAVRSLMKNNKIKKFAAYSWIEIDNQVHKFVAEDRTHSETEQIYEELNRLIKKLQE 600

Query: 597 DAPSLDAD 604
              + D +
Sbjct: 601 SGFTPDTN 608



 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 99/404 (24%), Positives = 185/404 (45%), Gaps = 80/404 (19%)

Query: 31  GQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFL 90
           G  S+A+     + + G      T   +L  C++   +K GK++H  +  T     + F+
Sbjct: 134 GCSSQALEFFVRMQEEGFESTDYTHVSVLHACSQLLDIKRGKQIHGRIVATSL-GESVFV 192

Query: 91  SNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGY--------------------- 129
            N L +MY KCG+   AR +FD++  KN+ S+N+M+SGY                     
Sbjct: 193 WNALTNMYAKCGALDQARWLFDRMVNKNVVSWNSMISGYLQNGQPETCTKLFCEMQSSGL 252

Query: 130 -------ANL-------GMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKV 175
                  +N+       G +  A   F  + E+D V W TM++G A++G  E+ L  ++ 
Sbjct: 253 MPDQVTISNILSAYFQCGYIDEACKTFREIKEKDKVCWTTMMVGCAQNGKEEDALLLFRE 312

Query: 176 LRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGE 235
           +   ++  + F+ + +++ C +L  L   + VHG+ ++ G   ++++SS++VD Y+KCGE
Sbjct: 313 MLLENVRPDNFTISSVVSSCARLASLCQGQAVHGKAVIFGVDHDLLVSSALVDMYSKCGE 372

Query: 236 LSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRN 295
            +DA  +F     R+V++W +M+ GYA+                               N
Sbjct: 373 TADAWIVFKRMLTRNVISWNSMILGYAQ-------------------------------N 401

Query: 296 GLGQKALELFTRMMILRIRPNQHTFSSCLCAC--ASIVSLKHG-----KQVHGFLIRTNF 348
           G   +AL L+  M+   ++P+  TF   L AC  A +V    G      ++HG  +   F
Sbjct: 402 GKDLEALALYEEMLHENLKPDNITFVGVLSACMHAGLVERGQGYFYSISKIHG--MNPTF 459

Query: 349 RSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMIS 392
                  S +I++  + G ++    +      + N ++W+T++S
Sbjct: 460 DH----YSCMINLLGRAGYMDKAVDLIKSMTFEPNCLIWSTLLS 499



 Score = 54.7 bits (130), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 40/159 (25%), Positives = 70/159 (44%), Gaps = 5/159 (3%)

Query: 19  CLIQSFLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHL 78
           C     +     G+  +A+     +    +R    T++ ++  CA   SL  G+ VH   
Sbjct: 289 CWTTMMVGCAQNGKEEDALLLFREMLLENVRPDNFTISSVVSSCARLASLCQGQAVHGKA 348

Query: 79  KLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHA 138
            +         +S+ L+ MY KCG   DA  VF ++  +N+ S+N+M+ GYA  G    A
Sbjct: 349 VIFGVDHD-LLVSSALVDMYSKCGETADAWIVFKRMLTRNVISWNSMILGYAQNGKDLEA 407

Query: 139 RNLFDNMAERDVVSWNTMIIGY----AKSGAVEEGLKFY 173
             L++ M   ++   N   +G       +G VE G  ++
Sbjct: 408 LALYEEMLHENLKPDNITFVGVLSACMHAGLVERGQGYF 446


>gi|224066034|ref|XP_002302000.1| predicted protein [Populus trichocarpa]
 gi|222843726|gb|EEE81273.1| predicted protein [Populus trichocarpa]
          Length = 797

 Score =  374 bits (961), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 184/529 (34%), Positives = 319/529 (60%), Gaps = 21/529 (3%)

Query: 84  KTPTTFLS---NHLISMYFKCGSD---------VDARKVFDKIPVKNLFSYNNMLSGYAN 131
           K+ T F++   N LIS Y KC +           +ARK+FD++P ++  S+  +++GY  
Sbjct: 176 KSGTGFVTSVLNALISSYVKCAASPSAQSSSLMAEARKLFDEMPNRDELSWTTIITGYVK 235

Query: 132 LGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGI 191
              +  A+   +  +++  V+WN MI GYA  G   E  + ++ +    I  +EF+F  +
Sbjct: 236 NNDLDAAKEFLNGTSKKLGVAWNAMISGYAHRGLYLEAFEMFRKMIMSKIQLDEFTFTSV 295

Query: 192 LTICVKLEELKLTRQVHGQVLVTGFLSN------VVISSSIVDAYAKCGELSDARRLFDE 245
           +++C      +L +++H   L T  ++N      + ++++++  Y KCG++  A+ +F++
Sbjct: 296 ISVCANAGCFRLGKEMHAYFLKT--VANPAPDVAMPVNNALITFYWKCGKVDIAQEIFNK 353

Query: 246 TDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELF 305
              RD+++W  ++SGY  +  M+ A   FNEMPEKN +SW  +I+G  + G  ++AL+ F
Sbjct: 354 MPERDLVSWNIILSGYVNVRCMDEAKSFFNEMPEKNILSWIIMISGLAQIGFAEEALKFF 413

Query: 306 TRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKC 365
            RM +    P  + F+  + +C+ + SLKHG+Q+H  ++R  + S+    ++LI MY++C
Sbjct: 414 NRMKLQGFEPCDYAFAGAIISCSVLGSLKHGRQLHAQVVRYGYESSLSAGNALITMYARC 473

Query: 366 GCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVI 425
           G ++    +F +     +++ WN MI+AL QHG   QAI LF +M++  + PD+I+   +
Sbjct: 474 GVVDAAHCLF-INMPCVDAISWNAMIAALGQHGQGTQAIELFEEMLKEGILPDRISFLTV 532

Query: 426 LNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEH 485
           ++AC+H+GLV+EG  YF+SM +  G+ P++EH+A +I+LL +AG   +    +E MP+E 
Sbjct: 533 ISACSHAGLVKEGRKYFDSMHNVYGVNPDEEHYARIIDLLCRAGKFSEAKEVMESMPFEP 592

Query: 486 DSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQ 545
            + +W AL   CRIHGNID+G +  ++L +  PQ   T+ LLS++Y+  G+   + KVR+
Sbjct: 593 GAPIWEALLAGCRIHGNIDLGIEAAERLFELKPQHDGTYVLLSNMYAVAGQWNDMAKVRK 652

Query: 546 LINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQM 594
           L+ +R  KKE   SWIE+ENKVH+F V D+ HP    +Y+ LEQL  +M
Sbjct: 653 LMRDRGVKKEPGCSWIEVENKVHSFLVGDANHPEVRQIYNYLEQLVLEM 701



 Score =  182 bits (461), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 137/552 (24%), Positives = 257/552 (46%), Gaps = 59/552 (10%)

Query: 48  IRLPAETLAFILQQCA--ESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDV 105
           IR  A     +LQ C      S  L + VH H+ +     P   + N LI +Y K     
Sbjct: 7   IRTAANRYGSLLQICCLQSPISYSLARPVHAHM-IASGFQPRGHILNRLIDIYSKSSKLN 65

Query: 106 DARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDN--MAERDVVSWNTMIIGYAKS 163
            AR +FD+IP  ++ +   +++ Y+  G +K +R +F +  +  RD V +N MI  Y+ +
Sbjct: 66  YARYLFDEIPQPDIVARTTLIAAYSAAGDLKLSRKIFSDTPLGMRDSVFYNAMITAYSHN 125

Query: 164 GAVEEGLKFYKVLRRFSISCNEFSFAGIL-TICVKLEELKLTRQVHGQVLV--TGFLSNV 220
                 ++ +  ++R +   + ++F  +L  + +  E+ K  +Q+H  V+   TGF+++V
Sbjct: 126 HDGHAAIELFCDMQRDNFRPDNYTFTSVLGALALVAEKEKHCQQLHCAVVKSGTGFVTSV 185

Query: 221 VISSSIVDAYAKCGE---------LSDARRLFDETDARDVLTWTTMVSGYAKLGDMESAS 271
           +  ++++ +Y KC           +++AR+LFDE   RD L+WTT+++GY K  D+++A 
Sbjct: 186 L--NALISSYVKCAASPSAQSSSLMAEARKLFDEMPNRDELSWTTIITGYVKNNDLDAAK 243

Query: 272 KLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIV 331
           +  N   +K  V+W  +I+GY   GL  +A E+F +M++ +I+ ++ TF+S +  CA+  
Sbjct: 244 EFLNGTSKKLGVAWNAMISGYAHRGLYLEAFEMFRKMIMSKIQLDEFTFTSVISVCANAG 303

Query: 332 SLKHGKQVHGFLIRTNFRSNTIVM----SSLIDMYSKCG--------------------- 366
             + GK++H + ++T       V     ++LI  Y KCG                     
Sbjct: 304 CFRLGKEMHAYFLKTVANPAPDVAMPVNNALITFYWKCGKVDIAQEIFNKMPERDLVSWN 363

Query: 367 ----------CLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVK 416
                     C+++ +  F+    K N + W  MIS L Q G+ E+A++ F+ M     +
Sbjct: 364 IILSGYVNVRCMDEAKSFFNEMPEK-NILSWIIMISGLAQIGFAEEALKFFNRMKLQGFE 422

Query: 417 PDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMN 476
           P     A  + +C+  G ++ G      +    G   +      LI + A+ G  D    
Sbjct: 423 PCDYAFAGAIISCSVLGSLKHGRQLHAQVVR-YGYESSLSAGNALITMYARCGVVDAAHC 481

Query: 477 QLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGK 536
               MP   D+  WNA+      HG      ++ ++++ +         L  ++ SA   
Sbjct: 482 LFINMPCV-DAISWNAMIAALGQHGQGTQAIELFEEMLKEGILPDRISFL--TVISACSH 538

Query: 537 GRLVEKVRQLIN 548
             LV++ R+  +
Sbjct: 539 AGLVKEGRKYFD 550



 Score =  161 bits (407), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 104/386 (26%), Positives = 187/386 (48%), Gaps = 39/386 (10%)

Query: 30  KGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLH-LKLTQRKTPTT 88
           +G   EA      +    I+L   T   ++  CA +   +LGK +H + LK      P  
Sbjct: 267 RGLYLEAFEMFRKMIMSKIQLDEFTFTSVISVCANAGCFRLGKEMHAYFLKTVANPAPDV 326

Query: 89  FL--SNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMA 146
            +  +N LI+ Y+KCG    A+++F+K+P ++L S+N +LSGY N+  M  A++ F+ M 
Sbjct: 327 AMPVNNALITFYWKCGKVDIAQEIFNKMPERDLVSWNIILSGYVNVRCMDEAKSFFNEMP 386

Query: 147 ERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQ 206
           E++++SW  MI G A+ G  EE LKF+  ++       +++FAG +  C  L  LK  RQ
Sbjct: 387 EKNILSWIIMISGLAQIGFAEEALKFFNRMKLQGFEPCDYAFAGAIISCSVLGSLKHGRQ 446

Query: 207 VHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGD 266
           +H QV+  G+ S++   ++++  YA+CG +  A  LF      D ++W  M+   A LG 
Sbjct: 447 LHAQVVRYGYESSLSAGNALITMYARCGVVDAAHCLFINMPCVDAISWNAMI---AALG- 502

Query: 267 MESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCA 326
                                      ++G G +A+ELF  M+   I P++ +F + + A
Sbjct: 503 ---------------------------QHGQGTQAIELFEEMLKEGILPDRISFLTVISA 535

Query: 327 CASIVSLKHGKQVHGFLIRT-NFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSM 385
           C+    +K G++    +        +    + +ID+  + G  ++ ++V +    +  + 
Sbjct: 536 CSHAGLVKEGRKYFDSMHNVYGVNPDEEHYARIIDLLCRAGKFSEAKEVMESMPFEPGAP 595

Query: 386 LWNTMISALTQHGY----DEQAIRLF 407
           +W  +++    HG      E A RLF
Sbjct: 596 IWEALLAGCRIHGNIDLGIEAAERLF 621


>gi|357440933|ref|XP_003590744.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355479792|gb|AES60995.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 795

 Score =  373 bits (957), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 188/524 (35%), Positives = 305/524 (58%), Gaps = 20/524 (3%)

Query: 90  LSNHLISMYFKCGSD---------VDARKVFDKIPVKNLF--SYNNMLSGYANLGMMKHA 138
           ++N L+S Y  C S            ARKVFD+ P   ++  S+  M++GY     +  A
Sbjct: 177 VTNALLSCYVCCASSPLVKSSQLMASARKVFDETPKNQIYEPSWTTMIAGYVRNDDLVAA 236

Query: 139 RNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKL 198
           R L D +     V+WN MI GY + G  EE    ++ +    I  +E+++  +++ C   
Sbjct: 237 RELLDGLTYPIDVAWNAMISGYVRRGLYEEAFDTFRRMHSMGIQEDEYTYTSLISACGSC 296

Query: 199 EE----LKLTRQVHGQVLVTGFLSN----VVISSSIVDAYAKCGELSDARRLFDETDARD 250
            E        RQVHG +L T    +    + ++++++  Y K   + +ARR+FD+   RD
Sbjct: 297 NEKMGMFNCGRQVHGYILRTVVEPSHHFVLSVNNALITFYTKYDRMIEARRVFDKMPVRD 356

Query: 251 VLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMI 310
           +++W  ++SGY     +E A+ +F+EMPE+N ++WT +I+G  +NG G++ L+LF +M  
Sbjct: 357 IISWNAVLSGYVNAQRIEEANSIFSEMPERNVLTWTVMISGLAQNGFGEEGLKLFNQMKS 416

Query: 311 LRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLND 370
             + P  + F+  + AC+ + SL +G+Q+H  +IR    S     ++LI MYS+CG +  
Sbjct: 417 EGLEPCDYAFAGAITACSVLGSLDNGQQIHSQVIRLGHDSGLSAGNALITMYSRCGVVES 476

Query: 371 GRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACT 430
              VF LT    +S+ WN MI+AL QHG+  +AI LF  M++  + PD+IT   IL AC 
Sbjct: 477 AESVF-LTMPYVDSVSWNAMIAALAQHGHGVKAIELFEQMMKEDILPDRITFLTILTACN 535

Query: 431 HSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLW 490
           H+GL++EG  YF++M    GI P ++H+A LI+LL +AG   +  + ++ MP+E  + +W
Sbjct: 536 HAGLIKEGRHYFDTMCTRYGITPGEDHYARLIDLLCRAGMFLKAQSVIKSMPFEAGAPIW 595

Query: 491 NALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINER 550
            AL   CRIHGN+++G +  D+L++  P    T+ +LS++Y+ALG+   V +VR L+ ER
Sbjct: 596 EALLAGCRIHGNMELGIQAADRLLELIPGQDGTYIILSNMYAALGQWDEVARVRLLMRER 655

Query: 551 QFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQM 594
             KKE   SW+E+EN VH F V D+ HP    +Y+ L+QL  +M
Sbjct: 656 GVKKEPGCSWVEVENMVHVFLVDDARHPEVQAVYTYLQQLVNEM 699



 Score =  199 bits (505), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 135/503 (26%), Positives = 248/503 (49%), Gaps = 61/503 (12%)

Query: 70  LGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGY 129
           + + VH H+ LT    P TF+ N LI++Y K  +   ARK+FDKIP  ++ +   +LS Y
Sbjct: 23  IARAVHAHI-LTSGFKPNTFILNRLINIYCKSSNITYARKLFDKIPKPDIVARTTLLSAY 81

Query: 130 ANLGMMKHARNLFDN--MAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFS 187
           ++ G +K A+ LF+   +  RD VS+N MI  Y+        L  +  ++R+    + F+
Sbjct: 82  SSSGNVKLAQQLFNATPLTIRDTVSYNAMITAYSHGNDGHAALNLFVQMKRYGFLPDPFT 141

Query: 188 FAGILT-ICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGE---------LS 237
           F+ +L+ + +  +E +  + +H +V+  G L    ++++++  Y  C           ++
Sbjct: 142 FSSVLSALSLIADEERHCQMLHCEVIKLGTLLIPSVTNALLSCYVCCASSPLVKSSQLMA 201

Query: 238 DARRLFDETDARDVL--TWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRN 295
            AR++FDET    +   +WTTM++GY +  D+ +A +L + +     V+W  +I+GY R 
Sbjct: 202 SARKVFDETPKNQIYEPSWTTMIAGYVRNDDLVAARELLDGLTYPIDVAWNAMISGYVRR 261

Query: 296 GLGQKALELFTRMMILRIRPNQHTFSSCLCACAS----IVSLKHGKQVHGFLIRTNFR-S 350
           GL ++A + F RM  + I+ +++T++S + AC S    +     G+QVHG+++RT    S
Sbjct: 262 GLYEEAFDTFRRMHSMGIQEDEYTYTSLISACGSCNEKMGMFNCGRQVHGYILRTVVEPS 321

Query: 351 NTIVMS---SLIDMYSKCGCLNDGRQVFDLTDNKE------------------------- 382
           +  V+S   +LI  Y+K   + + R+VFD    ++                         
Sbjct: 322 HHFVLSVNNALITFYTKYDRMIEARRVFDKMPVRDIISWNAVLSGYVNAQRIEEANSIFS 381

Query: 383 -----NSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQE 437
                N + W  MIS L Q+G+ E+ ++LF+ M    ++P     A  + AC+  G +  
Sbjct: 382 EMPERNVLTWTVMISGLAQNGFGEEGLKLFNQMKSEGLEPCDYAFAGAITACSVLGSLDN 441

Query: 438 GLTYFES---MTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALH 494
           G         + HD G+         LI + ++ G  +   +    MPY  DS  WNA+ 
Sbjct: 442 GQQIHSQVIRLGHDSGLSAGN----ALITMYSRCGVVESAESVFLTMPYV-DSVSWNAMI 496

Query: 495 GVCRIHGNIDMGRKVVDQLIDQN 517
                HG+     ++ +Q++ ++
Sbjct: 497 AALAQHGHGVKAIELFEQMMKED 519


>gi|357481283|ref|XP_003610927.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355512262|gb|AES93885.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 802

 Score =  372 bits (956), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 200/576 (34%), Positives = 325/576 (56%), Gaps = 38/576 (6%)

Query: 30  KGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTF 89
           + +L EA+  L  + Q   RL +  +A     C   + L+LGKRVH H K +    P   
Sbjct: 45  QNRLKEAVDYLHRIPQPSPRLYSTLIA----ACLRHRKLELGKRVHAHTKASNF-IPGIV 99

Query: 90  LSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERD 149
           +SN LI MY KCGS VDA+ +FD+IP K+L S+N M+SGYAN+G ++ AR LFD M  RD
Sbjct: 100 ISNRLIHMYAKCGSLVDAQMLFDEIPQKDLCSWNTMISGYANVGRIEQARKLFDEMPHRD 159

Query: 150 VVSWNTMIIGYAKSGAVEEGLKFYKVLRR-FSISCNEFSFAGILTICVKLEELKLTRQVH 208
             SWN +I GY   G   E L  +++++   S +CN F+ +  L     +  L+  +++H
Sbjct: 160 NFSWNAVISGYVSQGWYMEALDLFRMMQENESSNCNMFTLSSALAAAAAISSLRRGKEIH 219

Query: 209 GQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDME 268
           G ++ +G   + V+ ++++D Y KCG L++AR +FD+   +D+++WTTM+          
Sbjct: 220 GYLIRSGLELDEVVWTALLDLYGKCGSLNEARGIFDQMADKDIVSWTTMI---------- 269

Query: 269 SASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACA 328
              + F +                   G  ++   LF  +M   +RPN++TF+  L ACA
Sbjct: 270 --HRCFED-------------------GRKKEGFSLFRDLMGSGVRPNEYTFAGVLNACA 308

Query: 329 SIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWN 388
            + + + GK+VHG++ R  +   +   S+L+ +YSKCG     R+VF+    + + + W 
Sbjct: 309 DLAAEQMGKEVHGYMTRVGYDPFSFAASALVHVYSKCGNTETARRVFNQMP-RPDLVSWT 367

Query: 389 TMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHD 448
           ++I    Q+G  + A++ F  ++RS  KPD+IT   +L+ACTH+GLV  GL YF S+   
Sbjct: 368 SLIVGYAQNGQPDMALQFFESLLRSGTKPDEITFVGVLSACTHAGLVDIGLEYFHSVKEK 427

Query: 449 LGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRK 508
            G++   +H+AC+I+LLA++G   +  N ++ MP + D +LW +L G CRIHGNI++  +
Sbjct: 428 HGLVHTADHYACVIDLLARSGRFKEAENIIDNMPMKPDKFLWASLLGGCRIHGNIELAER 487

Query: 509 VVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVH 568
               L +  P++ AT+  LS+IY+  G      KVR  ++ R   K+   SWIEI+ +VH
Sbjct: 488 AAKALFELEPENPATYITLSNIYANAGLWTEETKVRNDMDNRGIVKKPGKSWIEIKRQVH 547

Query: 569 AFSVSDSLHPMRDVLYSVLEQLAGQMGEDAPSLDAD 604
            F V D+ HP    ++  L +L+ +M E+    D +
Sbjct: 548 VFLVGDTSHPKISDIHEYLGELSKKMKEEGYVADTN 583


>gi|356511265|ref|XP_003524347.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Glycine max]
          Length = 750

 Score =  372 bits (954), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 206/592 (34%), Positives = 318/592 (53%), Gaps = 86/592 (14%)

Query: 92  NHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVV 151
           N +IS Y +      AR +FDK+P K+LFS+N ML+GYA    ++ AR LFD+M E+DVV
Sbjct: 68  NAMISGYLRNAKFSLARDLFDKMPHKDLFSWNLMLTGYARNRRLRDARMLFDSMPEKDVV 127

Query: 152 SWNTMIIGYAKSGAVEEGLK-FYKVLRRFSISCNEFSFAGI------------------- 191
           SWN M+ GY +SG V+E    F ++  + SIS N    A +                   
Sbjct: 128 SWNAMLSGYVRSGHVDEARDVFDRMPHKNSISWNGLLAAYVRSGRLEEARRLFESKSDWE 187

Query: 192 LTIC-------VKLEELKLTRQVHGQVLVTGFLS-NVVIS-------------------- 223
           L  C       VK   L   RQ+  Q+ V   +S N +IS                    
Sbjct: 188 LISCNCLMGGYVKRNMLGDARQLFDQIPVRDLISWNTMISGYAQDGDLSQARRLFEESPV 247

Query: 224 ------SSIVDAYAKCGELSDARRLFDETDAR---------------------------- 249
                 +++V AY + G L +ARR+FDE   +                            
Sbjct: 248 RDVFTWTAMVYAYVQDGMLDEARRVFDEMPQKREMSYNVMIAGYAQYKRMDMGRELFEEM 307

Query: 250 ---DVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFT 306
              ++ +W  M+SGY + GD+  A  LF+ MP+++ VSW  +IAGY +NGL ++A+ +  
Sbjct: 308 PFPNIGSWNIMISGYCQNGDLAQARNLFDMMPQRDSVSWAAIIAGYAQNGLYEEAMNMLV 367

Query: 307 RMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCG 366
            M       N+ TF   L ACA I +L+ GKQVHG ++RT +    +V ++L+ MY KCG
Sbjct: 368 EMKRDGESLNRSTFCCALSACADIAALELGKQVHGQVVRTGYEKGCLVGNALVGMYCKCG 427

Query: 367 CLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVIL 426
           C+++   VF    +K+  + WNTM++   +HG+  QA+ +F  M+ + VKPD+IT+  +L
Sbjct: 428 CIDEAYDVFQGVQHKD-IVSWNTMLAGYARHGFGRQALTVFESMITAGVKPDEITMVGVL 486

Query: 427 NACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHD 486
           +AC+H+GL   G  YF SM  D GI PN +H+AC+I+LL +AGC ++  N +  MP+E D
Sbjct: 487 SACSHTGLTDRGTEYFHSMNKDYGITPNSKHYACMIDLLGRAGCLEEAQNLIRNMPFEPD 546

Query: 487 SYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQL 546
           +  W AL G  RIHGN+++G +  + +    P +S  + LLS++Y+A G+   V K+R  
Sbjct: 547 AATWGALLGASRIHGNMELGEQAAEMVFKMEPHNSGMYVLLSNLYAASGRWVDVSKMRLK 606

Query: 547 INERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQMGEDA 598
           + +   +K    SW+E++NK+H F+V D  HP +  +Y+ LE+L  +M  + 
Sbjct: 607 MRQIGVQKTPGYSWVEVQNKIHTFTVGDCFHPEKGRIYAFLEELDLKMKHEG 658



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 88/308 (28%), Positives = 145/308 (47%), Gaps = 21/308 (6%)

Query: 217 LSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNE 276
           L N V  ++++  Y +  + S AR LFD+   +D+ +W  M++GYA+   +  A  LF+ 
Sbjct: 61  LRNSVSYNAMISGYLRNAKFSLARDLFDKMPHKDLFSWNLMLTGYARNRRLRDARMLFDS 120

Query: 277 MPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHG 336
           MPEK+ VSW  +++GY R+G   +A ++F RM       N  +++  L A      L+  
Sbjct: 121 MPEKDVVSWNAMLSGYVRSGHVDEARDVFDRM----PHKNSISWNGLLAAYVRSGRLEEA 176

Query: 337 KQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQ 396
           ++    L  +      I  + L+  Y K   L D RQ+FD    ++  + WNTMIS   Q
Sbjct: 177 RR----LFESKSDWELISCNCLMGGYVKRNMLGDARQLFDQIPVRD-LISWNTMISGYAQ 231

Query: 397 HGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQE 456
            G   QA RLF +   S V+ D  T   ++ A    G++ E    F+ M     +  N  
Sbjct: 232 DGDLSQARRLFEE---SPVR-DVFTWTAMVYAYVQDGMLDEARRVFDEMPQKREMSYN-- 285

Query: 457 HHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNAL-HGVCRIHGNIDMGRKVVDQLID 515
               +I   AQ    D      E+MP+ +    WN +  G C+ +G++   R + D +  
Sbjct: 286 ---VMIAGYAQYKRMDMGRELFEEMPFPNIGS-WNIMISGYCQ-NGDLAQARNLFDMMPQ 340

Query: 516 QNPQSSAT 523
           ++  S A 
Sbjct: 341 RDSVSWAA 348



 Score = 68.6 bits (166), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 46/169 (27%), Positives = 84/169 (49%), Gaps = 6/169 (3%)

Query: 31  GQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFL 90
           G   EA++ L  + + G  L   T    L  CA+  +L+LGK+VH  +  T  +     +
Sbjct: 357 GLYEEAMNMLVEMKRDGESLNRSTFCCALSACADIAALELGKQVHGQVVRTGYEK-GCLV 415

Query: 91  SNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDV 150
            N L+ MY KCG   +A  VF  +  K++ S+N ML+GYA  G  + A  +F++M    V
Sbjct: 416 GNALVGMYCKCGCIDEAYDVFQGVQHKDIVSWNTMLAGYARHGFGRQALTVFESMITAGV 475

Query: 151 VSWNTMIIGY----AKSGAVEEGLKFYKVLRR-FSISCNEFSFAGILTI 194
                 ++G     + +G  + G +++  + + + I+ N   +A ++ +
Sbjct: 476 KPDEITMVGVLSACSHTGLTDRGTEYFHSMNKDYGITPNSKHYACMIDL 524


>gi|357464703|ref|XP_003602633.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355491681|gb|AES72884.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 647

 Score =  371 bits (952), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 189/533 (35%), Positives = 314/533 (58%), Gaps = 8/533 (1%)

Query: 53  ETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFD 112
           E  + ++  C  +KSLK GK +H  L  T      TFL+N LI +Y KCG      K FD
Sbjct: 79  EKFSSLISNCVSAKSLKHGKALHSQLIKTALFF-ETFLANGLIDLYSKCGCKESIHKAFD 137

Query: 113 KIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKF 172
            +P K   ++N +LS Y+  G+   A  LFD M +R++VS+N++I G  +    +E +KF
Sbjct: 138 DLPNKTTRTWNTLLSFYSKKGVFNQAYKLFDEMPQRNLVSYNSLISGLTRHEFHKEAVKF 197

Query: 173 YKVLRRF--SISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAY 230
           ++ ++     +  +EF+   +++ C  L+ +K  RQVHG   + GF +N++++++++DAY
Sbjct: 198 FREMQNGVGGLMLDEFTLVSLVSNCSCLDTVKWLRQVHGVATIVGFRTNLILNNALIDAY 257

Query: 231 AKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIA 290
            KCGE + +  LF     +D ++WT+MV  Y +   ++ A K+FNEMP K  VSW  LI+
Sbjct: 258 GKCGEPNSSFCLFRSMVEKDAVSWTSMVVTYTRASRIDDACKVFNEMPVKYTVSWAALIS 317

Query: 291 GYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIR---TN 347
           G+ +NG   +ALE+F +M+   + P   TF S L ACAS   +  GKQVH  +IR   ++
Sbjct: 318 GFVKNGRCYEALEVFHQMIKEGVLPRAQTFVSVLDACASEALIGRGKQVHCQIIRGRSSD 377

Query: 348 FRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLF 407
              N  V ++L+DMY+KCG +     +F++  + ++ + WNT+I+   Q+G  E ++ +F
Sbjct: 378 NLFNVYVFNALMDMYAKCGDMKSAENLFEMMIHVKDVVSWNTLITGFAQNGRGEDSLAVF 437

Query: 408 HDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQ 467
             M+ S+++P+ +T   +L+AC H+GLV  GL   +SM    G+ P   H+A LI+LL +
Sbjct: 438 DRMIESNIEPNHVTFLGVLSACNHAGLVNAGLELLDSMERRYGVKPKSNHYALLIDLLGR 497

Query: 468 AGCSDQLMNQLEKMPYEHDSY--LWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHG 525
               ++ M  +EK+P E  ++  +W A+ G CR+HGN+++ RK  + L    P+++  + 
Sbjct: 498 KNRLEEAMCLIEKVPNEISNHIAMWGAVLGGCRVHGNLELARKAAEALFALEPENTGRYV 557

Query: 526 LLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHP 578
           +LS+IY+A G+     ++R ++ ER  KKE A S IE++   H F   D  HP
Sbjct: 558 MLSNIYAASGRWSDTNRIRNVMKERGLKKEPAFSRIELKESRHEFVAKDKFHP 610



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 42/160 (26%), Positives = 76/160 (47%), Gaps = 9/160 (5%)

Query: 27  LISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTP 86
            +  G+  EA+     + + G+   A+T   +L  CA    +  GK+VH  + +  R + 
Sbjct: 319 FVKNGRCYEALEVFHQMIKEGVLPRAQTFVSVLDACASEALIGRGKQVHCQI-IRGRSSD 377

Query: 87  TTF---LSNHLISMYFKCGSDVDARKVFD-KIPVKNLFSYNNMLSGYANLGMMKHARNLF 142
             F   + N L+ MY KCG    A  +F+  I VK++ S+N +++G+A  G  + +  +F
Sbjct: 378 NLFNVYVFNALMDMYAKCGDMKSAENLFEMMIHVKDVVSWNTLITGFAQNGRGEDSLAVF 437

Query: 143 DNMAERDVVSWNTMIIGYAK----SGAVEEGLKFYKVLRR 178
           D M E ++   +   +G       +G V  GL+    + R
Sbjct: 438 DRMIESNIEPNHVTFLGVLSACNHAGLVNAGLELLDSMER 477


>gi|297809863|ref|XP_002872815.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297318652|gb|EFH49074.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 776

 Score =  369 bits (948), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 192/560 (34%), Positives = 320/560 (57%), Gaps = 43/560 (7%)

Query: 66  KSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNM 125
           ++  LGK   L  ++ +R   +    N ++S Y + G   DAR+VFD++P KN  S+N +
Sbjct: 133 RNRNLGKARELFERMPERDVCSW---NTILSGYAQNGCVDDARRVFDRMPEKNDVSWNAL 189

Query: 126 LSGYAN--------------------------LGMMK-----HARNLFDNMAERDVVSWN 154
           LS Y                             G +K      AR  FD+M  RDVVSWN
Sbjct: 190 LSAYVQNSKLEEACVLFGSRENWALVSWNCLLGGFVKKKKIVEARQFFDSMKVRDVVSWN 249

Query: 155 TMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVT 214
           T+I GYA++G ++E  + +      S   + F++  +++  ++   ++  R++  ++   
Sbjct: 250 TIITGYAQNGEIDEARQLFDE----SPVHDVFTWTAMVSGYIQNRMVEEARELFDRMPE- 304

Query: 215 GFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLF 274
               N V  ++++  Y +   +  A+ LFD    R+V TW TM++GYA+ G +  A  LF
Sbjct: 305 ---RNEVSWNAMLAGYVQGERVEMAKELFDVMPCRNVSTWNTMITGYAQCGKISEAKNLF 361

Query: 275 NEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLK 334
           ++MP+++PVSW  +IAGY+++G   +AL LF  M     R N+ +FSS L  CA +V+L+
Sbjct: 362 DKMPKRDPVSWAAMIAGYSQSGHSYEALRLFVLMEREGGRLNRSSFSSALSTCADVVALE 421

Query: 335 HGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISAL 394
            GKQ+HG L++  + +   V ++L+ MY KCG + +   +F     K+  + WNTMI+  
Sbjct: 422 LGKQLHGRLVKGGYETGCFVGNALLLMYCKCGSIEEANDLFKEMAGKD-IVSWNTMIAGY 480

Query: 395 TQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPN 454
           ++HG+ E+A+R F  M R  +KPD  T+  +L+AC+H+GLV +G  YF +MT D G+ PN
Sbjct: 481 SRHGFGEEALRFFESMKREGLKPDDATMVAVLSACSHTGLVDKGRQYFHTMTQDYGVRPN 540

Query: 455 QEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLI 514
            +H+AC+++LL +AG  ++  N ++ MP+E D+ +W  L G  R+HGN ++     D++ 
Sbjct: 541 SQHYACMVDLLGRAGLLEEAHNLMKNMPFEPDAAIWGTLLGASRVHGNTELAETAADKIF 600

Query: 515 DQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSD 574
              P++S  + LLS++Y++ G+   V K+R  + ++  KK    SWIEI+NK H FSV D
Sbjct: 601 AMEPENSGMYVLLSNLYASSGRWGDVGKLRVRMRDKGVKKVPGYSWIEIQNKTHTFSVGD 660

Query: 575 SLHPMRDVLYSVLEQLAGQM 594
             HP +D +++ LE L  +M
Sbjct: 661 EFHPEKDEIFAFLEDLDLRM 680



 Score =  166 bits (421), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 112/366 (30%), Positives = 181/366 (49%), Gaps = 71/366 (19%)

Query: 92  NHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVV 151
           N +IS Y + G    AR +FD++P ++L S+N M+ GY     +  AR LF+ M ERDV 
Sbjct: 94  NAMISGYLRNGEFELARMLFDEMPERDLVSWNVMIKGYVRNRNLGKARELFERMPERDVC 153

Query: 152 SWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICV---KLEE---LKLTR 205
           SWNT++ GYA++G V++  + +  +       N+ S+  +L+  V   KLEE   L  +R
Sbjct: 154 SWNTILSGYAQNGCVDDARRVFDRM----PEKNDVSWNALLSAYVQNSKLEEACVLFGSR 209

Query: 206 Q----VHGQVLVTGFLS-----------------NVVISSSIVDAYAKCGELSDARRLFD 244
           +    V    L+ GF+                  +VV  ++I+  YA+ GE+ +AR+LFD
Sbjct: 210 ENWALVSWNCLLGGFVKKKKIVEARQFFDSMKVRDVVSWNTIITGYAQNGEIDEARQLFD 269

Query: 245 ETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALEL 304
           E+   DV TWT MVSGY +   +E A +LF+ MPE+N VSW  ++AGY +    + A EL
Sbjct: 270 ESPVHDVFTWTAMVSGYIQNRMVEEARELFDRMPERNEVSWNAMLAGYVQGERVEMAKEL 329

Query: 305 FTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSK 364
           F  M                  C                       N    +++I  Y++
Sbjct: 330 FDVM-----------------PC----------------------RNVSTWNTMITGYAQ 350

Query: 365 CGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAV 424
           CG +++ + +FD    K + + W  MI+  +Q G+  +A+RLF  M R   + ++ + + 
Sbjct: 351 CGKISEAKNLFDKMP-KRDPVSWAAMIAGYSQSGHSYEALRLFVLMEREGGRLNRSSFSS 409

Query: 425 ILNACT 430
            L+ C 
Sbjct: 410 ALSTCA 415



 Score =  102 bits (254), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 88/378 (23%), Positives = 157/378 (41%), Gaps = 58/378 (15%)

Query: 146 AERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTR 205
            + D+  WN  I  Y ++G   E L+ +K + R+S                         
Sbjct: 55  GDSDIKEWNVAISSYMRTGRCSEALRVFKRMPRWS------------------------- 89

Query: 206 QVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLG 265
            V    +++G+L N              GE   AR LFDE   RD+++W  M+ GY +  
Sbjct: 90  SVSYNAMISGYLRN--------------GEFELARMLFDEMPERDLVSWNVMIKGYVRNR 135

Query: 266 DMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLC 325
           ++  A +LF  MPE++  SW T+++GY +NG    A  +F RM      P ++  S    
Sbjct: 136 NLGKARELFERMPERDVCSWNTILSGYAQNGCVDDARRVFDRM------PEKNDVSWNAL 189

Query: 326 ACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSM 385
             A + + K  +    F  R N+    +  + L+  + K   + + RQ FD    ++  +
Sbjct: 190 LSAYVQNSKLEEACVLFGSRENW--ALVSWNCLLGGFVKKKKIVEARQFFDSMKVRD-VV 246

Query: 386 LWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESM 445
            WNT+I+   Q+G  ++A +LF +    S   D  T   +++    + +V+E    F+ M
Sbjct: 247 SWNTIITGYAQNGEIDEARQLFDE----SPVHDVFTWTAMVSGYIQNRMVEEARELFDRM 302

Query: 446 THDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDM 505
                   N+     ++    Q    +      + MP  + S  WN +       G I  
Sbjct: 303 PER-----NEVSWNAMLAGYVQGERVEMAKELFDVMPCRNVS-TWNTMITGYAQCGKISE 356

Query: 506 GRKVVDQLIDQNPQSSAT 523
            + + D++  ++P S A 
Sbjct: 357 AKNLFDKMPKRDPVSWAA 374



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 85/330 (25%), Positives = 146/330 (44%), Gaps = 61/330 (18%)

Query: 219 NVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMP 278
           NV ISS     Y + G  S+A R+F        +++  M+SGY + G+ E A  LF+EMP
Sbjct: 63  NVAISS-----YMRTGRCSEALRVFKRMPRWSSVSYNAMISGYLRNGEFELARMLFDEMP 117

Query: 279 EKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQ 338
           E++ VSW  +I GY RN    KA ELF RM      P +      +C+  +I+S      
Sbjct: 118 ERDLVSWNVMIKGYVRNRNLGKARELFERM------PERD-----VCSWNTILS------ 160

Query: 339 VHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHG 398
                                  Y++ GC++D R+VFD    K N + WN ++SA  Q+ 
Sbjct: 161 ----------------------GYAQNGCVDDARRVFDRMPEK-NDVSWNALLSAYVQNS 197

Query: 399 YDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHH 458
             E+A  LF      ++    ++   +L        + E   +F+SM      + +    
Sbjct: 198 KLEEACVLFGSRENWAL----VSWNCLLGGFVKKKKIVEARQFFDSMK-----VRDVVSW 248

Query: 459 ACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNP 518
             +I   AQ G  D+     ++ P  HD + W A+      +  ++  R++ D++ ++N 
Sbjct: 249 NTIITGYAQNGEIDEARQLFDESPV-HDVFTWTAMVSGYIQNRMVEEARELFDRMPERNE 307

Query: 519 QSSATHGLLSSIYSALGKGRLVEKVRQLIN 548
            S       +++ +   +G  VE  ++L +
Sbjct: 308 VS------WNAMLAGYVQGERVEMAKELFD 331



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 75/308 (24%), Positives = 125/308 (40%), Gaps = 50/308 (16%)

Query: 31  GQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFL 90
           G   EA+    L+ + G RL   + +  L  CA+  +L+LGK++H  L     +T   F+
Sbjct: 383 GHSYEALRLFVLMEREGGRLNRSSFSSALSTCADVVALELGKQLHGRLVKGGYET-GCFV 441

Query: 91  SNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDV 150
            N L+ MY KCGS  +A  +F ++  K++ S+N M++GY                     
Sbjct: 442 GNALLLMYCKCGSIEEANDLFKEMAGKDIVSWNTMIAGY--------------------- 480

Query: 151 VSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQ-VHG 209
                     ++ G  EE L+F++ ++R  +  ++ +   +L+ C     +   RQ  H 
Sbjct: 481 ----------SRHGFGEEALRFFESMKREGLKPDDATMVAVLSACSHTGLVDKGRQYFHT 530

Query: 210 QVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDAR-DVLTWTTMVSGYAKLGDME 268
                G   N    + +VD   + G L +A  L        D   W T++      G+ E
Sbjct: 531 MTQDYGVRPNSQHYACMVDLLGRAGLLEEAHNLMKNMPFEPDAAIWGTLLGASRVHGNTE 590

Query: 269 ----SASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMM-----------ILRI 313
               +A K+F   PE N   +  L   Y  +G      +L  RM             + I
Sbjct: 591 LAETAADKIFAMEPE-NSGMYVLLSNLYASSGRWGDVGKLRVRMRDKGVKKVPGYSWIEI 649

Query: 314 RPNQHTFS 321
           +   HTFS
Sbjct: 650 QNKTHTFS 657


>gi|15235498|ref|NP_192184.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75213324|sp|Q9SY02.1|PP301_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g02750
 gi|4263522|gb|AAD15348.1| hypothetical protein [Arabidopsis thaliana]
 gi|7269760|emb|CAB77760.1| hypothetical protein [Arabidopsis thaliana]
 gi|332656824|gb|AEE82224.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 781

 Score =  369 bits (947), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 192/560 (34%), Positives = 318/560 (56%), Gaps = 43/560 (7%)

Query: 66  KSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNM 125
           ++  LGK   L   + +R   +    N ++S Y + G   DAR VFD++P KN  S+N +
Sbjct: 138 RNRNLGKARELFEIMPERDVCSW---NTMLSGYAQNGCVDDARSVFDRMPEKNDVSWNAL 194

Query: 126 LSGYANLGMMKHA-------------------------------RNLFDNMAERDVVSWN 154
           LS Y     M+ A                               R  FD+M  RDVVSWN
Sbjct: 195 LSAYVQNSKMEEACMLFKSRENWALVSWNCLLGGFVKKKKIVEARQFFDSMNVRDVVSWN 254

Query: 155 TMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVT 214
           T+I GYA+SG ++E  + +      S   + F++  +++  ++   ++  R++  ++   
Sbjct: 255 TIITGYAQSGKIDEARQLFDE----SPVQDVFTWTAMVSGYIQNRMVEEARELFDKMPE- 309

Query: 215 GFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLF 274
               N V  ++++  Y +   +  A+ LFD    R+V TW TM++GYA+ G +  A  LF
Sbjct: 310 ---RNEVSWNAMLAGYVQGERMEMAKELFDVMPCRNVSTWNTMITGYAQCGKISEAKNLF 366

Query: 275 NEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLK 334
           ++MP+++PVSW  +IAGY+++G   +AL LF +M     R N+ +FSS L  CA +V+L+
Sbjct: 367 DKMPKRDPVSWAAMIAGYSQSGHSFEALRLFVQMEREGGRLNRSSFSSALSTCADVVALE 426

Query: 335 HGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISAL 394
            GKQ+HG L++  + +   V ++L+ MY KCG + +   +F     K+  + WNTMI+  
Sbjct: 427 LGKQLHGRLVKGGYETGCFVGNALLLMYCKCGSIEEANDLFKEMAGKD-IVSWNTMIAGY 485

Query: 395 TQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPN 454
           ++HG+ E A+R F  M R  +KPD  T+  +L+AC+H+GLV +G  YF +MT D G++PN
Sbjct: 486 SRHGFGEVALRFFESMKREGLKPDDATMVAVLSACSHTGLVDKGRQYFYTMTQDYGVMPN 545

Query: 455 QEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLI 514
            +H+AC+++LL +AG  +   N ++ MP+E D+ +W  L G  R+HGN ++     D++ 
Sbjct: 546 SQHYACMVDLLGRAGLLEDAHNLMKNMPFEPDAAIWGTLLGASRVHGNTELAETAADKIF 605

Query: 515 DQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSD 574
              P++S  + LLS++Y++ G+   V K+R  + ++  KK    SWIEI+NK H FSV D
Sbjct: 606 AMEPENSGMYVLLSNLYASSGRWGDVGKLRVRMRDKGVKKVPGYSWIEIQNKTHTFSVGD 665

Query: 575 SLHPMRDVLYSVLEQLAGQM 594
             HP +D +++ LE+L  +M
Sbjct: 666 EFHPEKDEIFAFLEELDLRM 685



 Score =  169 bits (427), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 112/366 (30%), Positives = 183/366 (50%), Gaps = 71/366 (19%)

Query: 92  NHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVV 151
           N +IS Y + G    ARK+FD++P ++L S+N M+ GY     +  AR LF+ M ERDV 
Sbjct: 99  NGMISGYLRNGEFELARKLFDEMPERDLVSWNVMIKGYVRNRNLGKARELFEIMPERDVC 158

Query: 152 SWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICV---KLEE---LKLTR 205
           SWNTM+ GYA++G V++    +  +       N+ S+  +L+  V   K+EE   L  +R
Sbjct: 159 SWNTMLSGYAQNGCVDDARSVFDRM----PEKNDVSWNALLSAYVQNSKMEEACMLFKSR 214

Query: 206 Q----VHGQVLVTGFLS-----------------NVVISSSIVDAYAKCGELSDARRLFD 244
           +    V    L+ GF+                  +VV  ++I+  YA+ G++ +AR+LFD
Sbjct: 215 ENWALVSWNCLLGGFVKKKKIVEARQFFDSMNVRDVVSWNTIITGYAQSGKIDEARQLFD 274

Query: 245 ETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALEL 304
           E+  +DV TWT MVSGY +   +E A +LF++MPE+N VSW  ++AGY +    + A EL
Sbjct: 275 ESPVQDVFTWTAMVSGYIQNRMVEEARELFDKMPERNEVSWNAMLAGYVQGERMEMAKEL 334

Query: 305 FTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSK 364
           F  M                  C                       N    +++I  Y++
Sbjct: 335 FDVM-----------------PC----------------------RNVSTWNTMITGYAQ 355

Query: 365 CGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAV 424
           CG +++ + +FD    K + + W  MI+  +Q G+  +A+RLF  M R   + ++ + + 
Sbjct: 356 CGKISEAKNLFDKMP-KRDPVSWAAMIAGYSQSGHSFEALRLFVQMEREGGRLNRSSFSS 414

Query: 425 ILNACT 430
            L+ C 
Sbjct: 415 ALSTCA 420



 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 96/372 (25%), Positives = 154/372 (41%), Gaps = 58/372 (15%)

Query: 122 YNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSI 181
           +N  +S Y   G    A  +F  M     VS+N MI GY ++G  E   K +        
Sbjct: 67  WNVAISSYMRTGRCNEALRVFKRMPRWSSVSYNGMISGYLRNGEFELARKLF-------- 118

Query: 182 SCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARR 241
                            +E+     V   V++ G++ N                L  AR 
Sbjct: 119 -----------------DEMPERDLVSWNVMIKGYVRNR--------------NLGKARE 147

Query: 242 LFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKA 301
           LF+    RDV +W TM+SGYA+ G ++ A  +F+ MPEKN VSW  L++ Y +N   ++A
Sbjct: 148 LFEIMPERDVCSWNTMLSGYAQNGCVDDARSVFDRMPEKNDVSWNALLSAYVQNSKMEEA 207

Query: 302 LELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDM 361
             LF      + R N     S  C     V  K   +   F    N R + +  +++I  
Sbjct: 208 CMLF------KSRENW-ALVSWNCLLGGFVKKKKIVEARQFFDSMNVR-DVVSWNTIITG 259

Query: 362 YSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKIT 421
           Y++ G +++ RQ+FD +   ++   W  M+S   Q+   E+A  LF  M     + ++++
Sbjct: 260 YAQSGKIDEARQLFDESP-VQDVFTWTAMVSGYIQNRMVEEARELFDKM----PERNEVS 314

Query: 422 LAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKM 481
              +L     +G VQ           D+    N      +I   AQ G   +  N  +KM
Sbjct: 315 WNAML-----AGYVQGERMEMAKELFDVMPCRNVSTWNTMITGYAQCGKISEAKNLFDKM 369

Query: 482 PYEHDSYLWNAL 493
           P + D   W A+
Sbjct: 370 P-KRDPVSWAAM 380



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 68/299 (22%), Positives = 132/299 (44%), Gaps = 25/299 (8%)

Query: 250 DVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMM 309
           D+  W   +S Y + G    A ++F  MP  + VS+  +I+GY RNG  + A +LF  M 
Sbjct: 63  DIKEWNVAISSYMRTGRCNEALRVFKRMPRWSSVSYNGMISGYLRNGEFELARKLFDEM- 121

Query: 310 ILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLN 369
                P +   S  +     + +   GK    F I      +    ++++  Y++ GC++
Sbjct: 122 -----PERDLVSWNVMIKGYVRNRNLGKARELFEIMPE--RDVCSWNTMLSGYAQNGCVD 174

Query: 370 DGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNAC 429
           D R VFD    K N + WN ++SA  Q+   E+A  LF    +S      ++   +L   
Sbjct: 175 DARSVFDRMPEK-NDVSWNALLSAYVQNSKMEEACMLF----KSRENWALVSWNCLLGGF 229

Query: 430 THSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYL 489
                + E   +F+SM      + +      +I   AQ+G  D+     ++ P + D + 
Sbjct: 230 VKKKKIVEARQFFDSMN-----VRDVVSWNTIITGYAQSGKIDEARQLFDESPVQ-DVFT 283

Query: 490 WNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLIN 548
           W A+      +  ++  R++ D++ ++N  S       +++ +   +G  +E  ++L +
Sbjct: 284 WTAMVSGYIQNRMVEEARELFDKMPERNEVS------WNAMLAGYVQGERMEMAKELFD 336



 Score = 69.3 bits (168), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 73/308 (23%), Positives = 124/308 (40%), Gaps = 50/308 (16%)

Query: 31  GQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFL 90
           G   EA+     + + G RL   + +  L  CA+  +L+LGK++H  L     +T   F+
Sbjct: 388 GHSFEALRLFVQMEREGGRLNRSSFSSALSTCADVVALELGKQLHGRLVKGGYET-GCFV 446

Query: 91  SNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDV 150
            N L+ MY KCGS  +A  +F ++  K++ S+N M++G                      
Sbjct: 447 GNALLLMYCKCGSIEEANDLFKEMAGKDIVSWNTMIAG---------------------- 484

Query: 151 VSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQ-VHG 209
                    Y++ G  E  L+F++ ++R  +  ++ +   +L+ C     +   RQ  + 
Sbjct: 485 ---------YSRHGFGEVALRFFESMKREGLKPDDATMVAVLSACSHTGLVDKGRQYFYT 535

Query: 210 QVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDAR-DVLTWTTMVSGYAKLGDME 268
                G + N    + +VD   + G L DA  L        D   W T++      G+ E
Sbjct: 536 MTQDYGVMPNSQHYACMVDLLGRAGLLEDAHNLMKNMPFEPDAAIWGTLLGASRVHGNTE 595

Query: 269 ----SASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMM-----------ILRI 313
               +A K+F   PE N   +  L   Y  +G      +L  RM             + I
Sbjct: 596 LAETAADKIFAMEPE-NSGMYVLLSNLYASSGRWGDVGKLRVRMRDKGVKKVPGYSWIEI 654

Query: 314 RPNQHTFS 321
           +   HTFS
Sbjct: 655 QNKTHTFS 662


>gi|224141479|ref|XP_002324099.1| predicted protein [Populus trichocarpa]
 gi|222867101|gb|EEF04232.1| predicted protein [Populus trichocarpa]
          Length = 676

 Score =  369 bits (946), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 200/608 (32%), Positives = 338/608 (55%), Gaps = 50/608 (8%)

Query: 3   SNFSPRGINRKNLPNNCLIQSFLSLISKGQLSEAI----------SSLDLLAQRGIRLP- 51
           S F P+   + N  +  L+     L +  +  EAI           +L +L Q  I  P 
Sbjct: 15  SPFQPKTFFKSNTKDTTLVPH---LCNHKRFDEAIHILCQQNRLKEALQILHQ--IDKPS 69

Query: 52  AETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVF 111
           A   + ++Q C +S+ L+ GK+VH H+KL+    P  F+ N L+ MY KC S +D++K+F
Sbjct: 70  ASVYSTLIQSCIKSRLLQQGKKVHQHIKLSGF-VPGLFILNRLLEMYAKCDSLMDSQKLF 128

Query: 112 DKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLK 171
           D++P ++L S+N ++SGYA +G+++ A++LFD M ERD  SW  MI GY +     E L+
Sbjct: 129 DEMPERDLCSWNILISGYAKMGLLQEAKSLFDKMPERDNFSWTAMISGYVRHDRPNEALE 188

Query: 172 FYKVLRRFSIS-CNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAY 230
            +++++R   S  N+F+ +  L     +  L++ +++HG ++ TG  S+ V+        
Sbjct: 189 LFRMMKRSDNSKSNKFTVSSALAAAAAVPCLRIGKEIHGYIMRTGLDSDEVV-------- 240

Query: 231 AKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIA 290
                                  W+ +   Y K G +E A  +F++M +++ V+WT +I 
Sbjct: 241 -----------------------WSALSDMYGKCGSIEEARHIFDKMVDRDIVTWTAMID 277

Query: 291 GYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRS 350
            Y ++G  ++  +LF  ++   IRPN+ TFS  L ACA+  S + GK+VHG++ R  F  
Sbjct: 278 RYFQDGRRKEGFDLFADLLRSGIRPNEFTFSGVLNACANQTSEELGKKVHGYMTRVGFDP 337

Query: 351 NTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDM 410
            +   S+L+ MYSKCG +    +VF  T  + +   W ++I+   Q+G  ++AIR F  +
Sbjct: 338 FSFAASALVHMYSKCGNMVSAERVFKETP-QPDLFSWTSLIAGYAQNGQPDEAIRYFELL 396

Query: 411 VRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGC 470
           V+S  +PD IT   +L+AC H+GLV +GL YF S+    G+    +H+AC+I+LLA++G 
Sbjct: 397 VKSGTQPDHITFVGVLSACAHAGLVDKGLDYFHSIKEQYGLTHTADHYACIIDLLARSGQ 456

Query: 471 SDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSI 530
            D+  N + KM  + D +LW +L G CRIHGN+ + ++  + L +  P++ AT+  L++I
Sbjct: 457 FDEAENIISKMSMKPDKFLWASLLGGCRIHGNLKLAQRAAEALFEIEPENPATYVTLANI 516

Query: 531 YSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQL 590
           Y+  G    V K+R+ +++R   K+  +SWI I+  VH F V D  HP    +   L +L
Sbjct: 517 YATAGMWSEVAKIRKTMDDRGVVKKPGLSWIAIKRDVHVFLVGDDSHPKSKEINEFLGKL 576

Query: 591 AGQMGEDA 598
           + +M E+ 
Sbjct: 577 SKRMKEEG 584


>gi|414885035|tpg|DAA61049.1| TPA: hypothetical protein ZEAMMB73_995105 [Zea mays]
          Length = 824

 Score =  369 bits (946), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 181/502 (36%), Positives = 303/502 (60%), Gaps = 15/502 (2%)

Query: 92  NHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVV 151
           N +++ Y + G   +AR++FD     +  S+N +++GY     ++ A+ +F+ M +RDVV
Sbjct: 235 NGMLAAYVRNGRIQEARELFDSRTEWDAISWNALMAGYVQRSQIEEAQKMFNKMPQRDVV 294

Query: 152 SWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVK---LEELKLTRQVH 208
           SWNTM+ GYA+ G + E  + + V     +    F++  I++   +   LEE K      
Sbjct: 295 SWNTMVSGYARRGDMAEARRLFDVAPIRDV----FTWTAIVSGYAQNGMLEEAK------ 344

Query: 209 GQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDME 268
            +V       N V  ++++ AY +   + +A+ LFD    R+V +W TM++GYA+ G ++
Sbjct: 345 -RVFDAMPDKNAVSWNAMMAAYVQRRMMEEAKELFDAMPCRNVASWNTMLTGYAQAGMLD 403

Query: 269 SASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACA 328
            A  +F  MP+K+ VSW  ++A Y++ G  ++ L+LF  M       N+  F+  L  CA
Sbjct: 404 EARAIFGMMPQKDAVSWAAMLAAYSQIGFSEETLQLFKEMGRCGEWVNRSAFACVLSTCA 463

Query: 329 SIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWN 388
            I +L+ G Q+H  LI+  +     V ++L+ MY KCG + +    F+  + + + + WN
Sbjct: 464 DIAALECGMQLHSRLIKAGYGVGCFVGNALLAMYFKCGSMEEAHSAFEEMEER-DVVSWN 522

Query: 389 TMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHD 448
           TMI+   +HG+ ++A+ +F  M ++S KPD ITL  +L AC+HSGLV++G++YF SM  D
Sbjct: 523 TMIAGYARHGFGKEALEVFDTMRKTSTKPDDITLVGVLAACSHSGLVEKGISYFYSMHRD 582

Query: 449 LGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRK 508
            G+    EH+ C+I+LL +AG  D+ +N ++ MP+E DS +W AL G  RIH N ++GR 
Sbjct: 583 FGVATKPEHYTCMIDLLGRAGRLDEAVNLMKDMPFEPDSTMWGALLGASRIHRNSELGRN 642

Query: 509 VVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVH 568
             +++ +  P+++  + LLS+IY++ GK R V+K+R +++ER  KK    SWIE++NKVH
Sbjct: 643 AAEKIFELEPENAGMYVLLSNIYASSGKWRDVDKMRHIMHERGVKKVPGFSWIEVQNKVH 702

Query: 569 AFSVSDSLHPMRDVLYSVLEQL 590
            FSV DS+HP R+ +Y+ LE L
Sbjct: 703 TFSVGDSVHPEREDIYAFLEDL 724



 Score =  176 bits (445), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 118/461 (25%), Positives = 222/461 (48%), Gaps = 60/461 (13%)

Query: 86  PTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNM 145
           P +F  N L+       S  D R +FD++PVK+  SYN M+S +AN G++  AR+ FD  
Sbjct: 167 PDSFSYNTLLHALGVSSSLADVRALFDEMPVKDSVSYNVMISSHANHGLVSLARHYFDLA 226

Query: 146 AERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTR 205
            E+D VSWN M+  Y ++G ++E  + +     +    +  S+  ++   V+  +++  +
Sbjct: 227 PEKDAVSWNGMLAAYVRNGRIQEARELFDSRTEW----DAISWNALMAGYVQRSQIEEAQ 282

Query: 206 QVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLG 265
           ++  ++       +VV  +++V  YA+ G++++ARRLFD    RDV TWT +VSGYA+ G
Sbjct: 283 KMFNKMP----QRDVVSWNTMVSGYARRGDMAEARRLFDVAPIRDVFTWTAIVSGYAQNG 338

Query: 266 DMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLC 325
            +E A ++F+ MP+KN VSW  ++A Y +  + ++A ELF  M                 
Sbjct: 339 MLEEAKRVFDAMPDKNAVSWNAMMAAYVQRRMMEEAKELFDAM----------------- 381

Query: 326 ACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSM 385
            C ++ S                       ++++  Y++ G L++ R +F +   K +++
Sbjct: 382 PCRNVASW----------------------NTMLTGYAQAGMLDEARAIFGMMPQK-DAV 418

Query: 386 LWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESM 445
            W  M++A +Q G+ E+ ++LF +M R     ++   A +L+ C     ++ G+     +
Sbjct: 419 SWAAMLAAYSQIGFSEETLQLFKEMGRCGEWVNRSAFACVLSTCADIAALECGMQLHSRL 478

Query: 446 T---HDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGN 502
               + +G          L+ +  + G  ++  +  E+M  E D   WN +      HG 
Sbjct: 479 IKAGYGVGCFVGN----ALLAMYFKCGSMEEAHSAFEEME-ERDVVSWNTMIAGYARHG- 532

Query: 503 IDMGRKVVDQLIDQNPQSSATHGL-LSSIYSALGKGRLVEK 542
              G++ ++        S+    + L  + +A     LVEK
Sbjct: 533 --FGKEALEVFDTMRKTSTKPDDITLVGVLAACSHSGLVEK 571



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 104/409 (25%), Positives = 187/409 (45%), Gaps = 48/409 (11%)

Query: 115 PVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYK 174
           P   +   N  ++ +   G +  A  LF  M  R   ++NTM+ GYA +G + + L F++
Sbjct: 103 PDMEVIRRNRAITAHMRAGRVPDAERLFAAMPRRSTSTYNTMLAGYAANGRLPQALSFFR 162

Query: 175 VLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLS-NVVISS--------- 224
            + R     + FS+  +L        L   R +  ++ V   +S NV+ISS         
Sbjct: 163 SIPR----PDSFSYNTLLHALGVSSSLADVRALFDEMPVKDSVSYNVMISSHANHGLVSL 218

Query: 225 -----------------SIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDM 267
                             ++ AY + G + +AR LFD     D ++W  +++GY +   +
Sbjct: 219 ARHYFDLAPEKDAVSWNGMLAAYVRNGRIQEARELFDSRTEWDAISWNALMAGYVQRSQI 278

Query: 268 ESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCAC 327
           E A K+FN+MP+++ VSW T+++GY R G   +A  LF    +  IR +  T+++ +   
Sbjct: 279 EEAQKMFNKMPQRDVVSWNTMVSGYARRGDMAEARRLFD---VAPIR-DVFTWTAIVSGY 334

Query: 328 ASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLW 387
           A    L+  K+V   +       N +  ++++  Y +   + + +++FD    + N   W
Sbjct: 335 AQNGMLEEAKRVFDAMP----DKNAVSWNAMMAAYVQRRMMEEAKELFDAMPCR-NVASW 389

Query: 388 NTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTH 447
           NTM++   Q G  ++A  +F  M +     D ++ A +L A +  G  +E L  F+ M  
Sbjct: 390 NTMLTGYAQAGMLDEARAIFGMMPQK----DAVSWAAMLAAYSQIGFSEETLQLFKEMGR 445

Query: 448 DLGIIPNQEHHACLIELLAQAG---CSDQLMNQLEKMPYEHDSYLWNAL 493
             G   N+   AC++   A      C  QL ++L K  Y    ++ NAL
Sbjct: 446 -CGEWVNRSAFACVLSTCADIAALECGMQLHSRLIKAGYGVGCFVGNAL 493



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 42/134 (31%), Positives = 73/134 (54%), Gaps = 6/134 (4%)

Query: 54  TLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDK 113
             A +L  CA+  +L+ G ++H  L +        F+ N L++MYFKCGS  +A   F++
Sbjct: 454 AFACVLSTCADIAALECGMQLHSRL-IKAGYGVGCFVGNALLAMYFKCGSMEEAHSAFEE 512

Query: 114 IPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGY----AKSGAVEEG 169
           +  +++ S+N M++GYA  G  K A  +FD M +      +  ++G     + SG VE+G
Sbjct: 513 MEERDVVSWNTMIAGYARHGFGKEALEVFDTMRKTSTKPDDITLVGVLAACSHSGLVEKG 572

Query: 170 LK-FYKVLRRFSIS 182
           +  FY + R F ++
Sbjct: 573 ISYFYSMHRDFGVA 586


>gi|297609253|ref|NP_001062888.2| Os09g0327200 [Oryza sativa Japonica Group]
 gi|255678787|dbj|BAF24802.2| Os09g0327200 [Oryza sativa Japonica Group]
          Length = 739

 Score =  368 bits (945), Expect = 4e-99,   Method: Compositional matrix adjust.
 Identities = 182/503 (36%), Positives = 298/503 (59%), Gaps = 9/503 (1%)

Query: 92  NHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVV 151
           N +++ Y + G   +AR +F+     ++ S+N ++SGY   G M  AR LFD M  RDVV
Sbjct: 166 NGMLAAYVRNGRVEEARGLFNSRTEWDVISWNALMSGYVQWGKMSEARELFDRMPGRDVV 225

Query: 152 SWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQV 211
           SWN M+ GYA+ G + E  + +       +    F++  +++   +   L+  R+V   +
Sbjct: 226 SWNIMVSGYARRGDMVEARRLFDAAPVRDV----FTWTAVVSGYAQNGMLEEARRVFDAM 281

Query: 212 LVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESAS 271
                  N V  +++V AY +   + +A+ LF+    R+V +W TM++GYA+ G +E A 
Sbjct: 282 PE----RNAVSWNAMVAAYIQRRMMDEAKELFNMMPCRNVASWNTMLTGYAQAGMLEEAK 337

Query: 272 KLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIV 331
            +F+ MP+K+ VSW  ++A Y++ G  ++ L+LF  M       N+  F+  L  CA I 
Sbjct: 338 AVFDTMPQKDAVSWAAMLAAYSQGGCSEETLQLFIEMGRCGEWVNRSAFACVLSTCADIA 397

Query: 332 SLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMI 391
           +L+ G Q+HG LIR  +     V ++L+ MY KCG + D R  F+  + + + + WNTMI
Sbjct: 398 ALECGMQLHGRLIRAGYGVGCFVGNALLAMYFKCGNMEDARNAFEEMEER-DVVSWNTMI 456

Query: 392 SALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGI 451
           +   +HG+ ++A+ +F  M  +S KPD ITL  +L AC+HSGLV++G++YF SM HD G+
Sbjct: 457 AGYARHGFGKEALEIFDMMRTTSTKPDDITLVGVLAACSHSGLVEKGISYFYSMHHDFGV 516

Query: 452 IPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVD 511
               EH+ C+I+LL +AG   +  + ++ MP+E DS +W AL G  RIH N ++GR   +
Sbjct: 517 TAKPEHYTCMIDLLGRAGRLAEAHDLMKDMPFEPDSTMWGALLGASRIHRNPELGRSAAE 576

Query: 512 QLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFS 571
           ++ +  P+++  + LLS+IY++ GK R   K+R ++ ER  KK    SWIE++NKVH FS
Sbjct: 577 KIFELEPENAGMYVLLSNIYASSGKWRDARKMRVMMEERGVKKVPGFSWIEVQNKVHTFS 636

Query: 572 VSDSLHPMRDVLYSVLEQLAGQM 594
             D +HP ++ +Y+ LE L  +M
Sbjct: 637 AGDCVHPEKEKIYAFLEDLDMRM 659



 Score =  172 bits (435), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 113/419 (26%), Positives = 199/419 (47%), Gaps = 56/419 (13%)

Query: 86  PTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNM 145
           P  +  N L+       S  DAR +FD++PV++  +YN M+S +AN G++  AR+ FD  
Sbjct: 98  PDNYSYNTLLHALAVSSSLADARGLFDEMPVRDSVTYNVMISSHANHGLVSLARHYFDLA 157

Query: 146 AERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTR 205
            E+D VSWN M+  Y ++G VEE    +     + +     S+  +++  V+  ++   R
Sbjct: 158 PEKDAVSWNGMLAAYVRNGRVEEARGLFNSRTEWDV----ISWNALMSGYVQWGKMSEAR 213

Query: 206 QVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLG 265
           ++  ++       +VV  + +V  YA+ G++ +ARRLFD    RDV TWT +VSGYA+ G
Sbjct: 214 ELFDRMPG----RDVVSWNIMVSGYARRGDMVEARRLFDAAPVRDVFTWTAVVSGYAQNG 269

Query: 266 DMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLC 325
            +E A ++F+ MPE+N VSW  ++A Y +  +  +A ELF  M                 
Sbjct: 270 MLEEARRVFDAMPERNAVSWNAMVAAYIQRRMMDEAKELFNMM----------------- 312

Query: 326 ACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSM 385
            C ++ S                       ++++  Y++ G L + + VFD    K +++
Sbjct: 313 PCRNVASW----------------------NTMLTGYAQAGMLEEAKAVFDTMPQK-DAV 349

Query: 386 LWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESM 445
            W  M++A +Q G  E+ ++LF +M R     ++   A +L+ C     ++ G+     +
Sbjct: 350 SWAAMLAAYSQGGCSEETLQLFIEMGRCGEWVNRSAFACVLSTCADIAALECGMQLHGRL 409

Query: 446 T---HDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHG 501
               + +G          L+ +  + G  +   N  E+M  E D   WN +      HG
Sbjct: 410 IRAGYGVGCFVGN----ALLAMYFKCGNMEDARNAFEEME-ERDVVSWNTMIAGYARHG 463



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 50/167 (29%), Positives = 87/167 (52%), Gaps = 7/167 (4%)

Query: 23  SFLSLISKGQLSEAISSLDLLAQR-GIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLT 81
           + L+  S+G  SE    L +   R G  +     A +L  CA+  +L+ G ++H  L + 
Sbjct: 353 AMLAAYSQGGCSEETLQLFIEMGRCGEWVNRSAFACVLSTCADIAALECGMQLHGRL-IR 411

Query: 82  QRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNL 141
                  F+ N L++MYFKCG+  DAR  F+++  +++ S+N M++GYA  G  K A  +
Sbjct: 412 AGYGVGCFVGNALLAMYFKCGNMEDARNAFEEMEERDVVSWNTMIAGYARHGFGKEALEI 471

Query: 142 FDNM----AERDVVSWNTMIIGYAKSGAVEEGLK-FYKVLRRFSISC 183
           FD M     + D ++   ++   + SG VE+G+  FY +   F ++ 
Sbjct: 472 FDMMRTTSTKPDDITLVGVLAACSHSGLVEKGISYFYSMHHDFGVTA 518


>gi|449520177|ref|XP_004167110.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Cucumis sativus]
          Length = 797

 Score =  368 bits (945), Expect = 5e-99,   Method: Compositional matrix adjust.
 Identities = 183/515 (35%), Positives = 300/515 (58%), Gaps = 13/515 (2%)

Query: 92  NHLISMYFK--------CGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFD 143
           N L+S+Y K        C + V ARK+FD++P ++  ++  M++GY     +  AR +F+
Sbjct: 188 NALLSVYVKRASELGISCSAMVSARKLFDEMPKRDELTWTTMITGYVRNDDLNGAREVFE 247

Query: 144 NMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKL 203
            M E    +WN MI GY   G  +E L   + +R   I  ++ ++  I++ C  +   ++
Sbjct: 248 AMVENLGAAWNAMISGYVHCGCFQEALTLCRKMRFLGIQFDDITYTTIISACANVGSFQM 307

Query: 204 TRQVHGQVLVTGFLSN----VVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVS 259
            +QVH  +L      N    + +S++++  Y K  ++ +AR++F     R+++TW  ++S
Sbjct: 308 GKQVHAYILKNELNPNHSFCLSVSNALITLYCKNNKVDEARKIFYAMPVRNIITWNAILS 367

Query: 260 GYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHT 319
           GY   G ME A   F EMP KN ++ T +I+G  +NG G + L+LF +M +    P    
Sbjct: 368 GYVNAGRMEEAKSFFEEMPVKNLLTLTVMISGLAQNGFGDEGLKLFKQMRLDGFEPCDFA 427

Query: 320 FSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTD 379
           F+  L AC+ + +L++G+Q+H  L+   + S+  V +++I MY+KCG +     VF +T 
Sbjct: 428 FAGALTACSVLGALENGRQLHAQLVHLGYESSLSVGNAMISMYAKCGVVEAAESVF-VTM 486

Query: 380 NKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGL 439
              + + WN+MI+AL QHG+  +AI LF  M++  V PD+IT   +L AC+H+GLV++G 
Sbjct: 487 PSVDLVSWNSMIAALGQHGHGVKAIELFDQMLKEGVFPDRITFLTVLTACSHAGLVEKGR 546

Query: 440 TYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRI 499
            YF SM    GI P ++H+A +++L  +AG        ++ MP +  + +W AL   CRI
Sbjct: 547 HYFNSMLESYGITPCEDHYARMVDLFCRAGMFSYARIVIDSMPSKPGAPVWEALLAGCRI 606

Query: 500 HGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAIS 559
           HGN+D+G +  +QL    PQ+  T+ LLS+IY+ +G+   V KVR+L+ ++  +KE A S
Sbjct: 607 HGNMDLGIEAAEQLFKLMPQNDGTYVLLSNIYADVGRWNEVAKVRKLMRDQAVRKEPACS 666

Query: 560 WIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQM 594
           WIE+ENKVH F V D +HP    +Y  LEQL  +M
Sbjct: 667 WIEVENKVHVFMVDDDVHPEVLSVYRYLEQLGLEM 701



 Score =  204 bits (519), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 154/553 (27%), Positives = 258/553 (46%), Gaps = 61/553 (11%)

Query: 48  IRLPAETLAFILQQCA--ESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDV 105
           IRL A   A  LQ C+  +  S  L + VH H+  +  K    FL N L+ MY K  + V
Sbjct: 7   IRLLANRYAEKLQLCSPQDPASFSLARAVHAHMIASGFKPRGHFL-NRLLEMYCKSSNLV 65

Query: 106 DARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDN--MAERDVVSWNTMIIGYAKS 163
            AR++F++IP  +  +   +++ Y  LG ++  R +F+   +  RD V +N MI GYA +
Sbjct: 66  YARQLFEEIPNPDAIARTTLITAYCALGNLELGREIFNGTPLYMRDSVFYNAMITGYAHN 125

Query: 164 GAVEEGLKFYKVLRRFSISCNEFSFAGILTICVK-LEELKLTRQVHGQVLVTGFLSNVVI 222
           G     L+ ++ +RR     ++F+F  +L+  V  +   +   Q+H  V+ TG      +
Sbjct: 126 GDGHSALELFRAMRRDDFRPDDFTFTSVLSALVLFVGNEQQCGQMHCAVVKTGM---GCV 182

Query: 223 SSSIVDA----YAK--------CGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESA 270
           SSS+++A    Y K        C  +  AR+LFDE   RD LTWTTM++GY +  D+  A
Sbjct: 183 SSSVLNALLSVYVKRASELGISCSAMVSARKLFDEMPKRDELTWTTMITGYVRNDDLNGA 242

Query: 271 SKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASI 330
            ++F  M E    +W  +I+GY   G  Q+AL L  +M  L I+ +  T+++ + ACA++
Sbjct: 243 REVFEAMVENLGAAWNAMISGYVHCGCFQEALTLCRKMRFLGIQFDDITYTTIISACANV 302

Query: 331 VSLKHGKQVHGFLIRTNFRSN----TIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSML 386
            S + GKQVH ++++     N      V ++LI +Y K   +++ R++F     + N + 
Sbjct: 303 GSFQMGKQVHAYILKNELNPNHSFCLSVSNALITLYCKNNKVDEARKIFYAMPVR-NIIT 361

Query: 387 WN-------------------------------TMISALTQHGYDEQAIRLFHDMVRSSV 415
           WN                                MIS L Q+G+ ++ ++LF  M     
Sbjct: 362 WNAILSGYVNAGRMEEAKSFFEEMPVKNLLTLTVMISGLAQNGFGDEGLKLFKQMRLDGF 421

Query: 416 KPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLM 475
           +P     A  L AC+  G ++ G      + H LG   +      +I + A+ G  +   
Sbjct: 422 EPCDFAFAGALTACSVLGALENGRQLHAQLVH-LGYESSLSVGNAMISMYAKCGVVEAAE 480

Query: 476 NQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALG 535
           +    MP   D   WN++      HG+     ++ DQ++ +         L  ++ +A  
Sbjct: 481 SVFVTMP-SVDLVSWNSMIAALGQHGHGVKAIELFDQMLKEGVFPDRITFL--TVLTACS 537

Query: 536 KGRLVEKVRQLIN 548
              LVEK R   N
Sbjct: 538 HAGLVEKGRHYFN 550



 Score =  166 bits (421), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 101/372 (27%), Positives = 188/372 (50%), Gaps = 35/372 (9%)

Query: 31  GQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTF- 89
           G   EA++    +   GI+    T   I+  CA   S ++GK+VH ++   +     +F 
Sbjct: 268 GCFQEALTLCRKMRFLGIQFDDITYTTIISACANVGSFQMGKQVHAYILKNELNPNHSFC 327

Query: 90  --LSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAE 147
             +SN LI++Y K     +ARK+F  +PV+N+ ++N +LSGY N G M+ A++ F+ M  
Sbjct: 328 LSVSNALITLYCKNNKVDEARKIFYAMPVRNIITWNAILSGYVNAGRMEEAKSFFEEMPV 387

Query: 148 RDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQV 207
           +++++   MI G A++G  +EGLK +K +R       +F+FAG LT C  L  L+  RQ+
Sbjct: 388 KNLLTLTVMISGLAQNGFGDEGLKLFKQMRLDGFEPCDFAFAGALTACSVLGALENGRQL 447

Query: 208 HGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDM 267
           H Q++  G+ S++ + ++++  YAKCG +  A  +F    + D+++W +M          
Sbjct: 448 HAQLVHLGYESSLSVGNAMISMYAKCGVVEAAESVFVTMPSVDLVSWNSM---------- 497

Query: 268 ESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCAC 327
                                IA   ++G G KA+ELF +M+   + P++ TF + L AC
Sbjct: 498 ---------------------IAALGQHGHGVKAIELFDQMLKEGVFPDRITFLTVLTAC 536

Query: 328 ASIVSLKHGKQVHGFLIRT-NFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSML 386
           +    ++ G+     ++ +          + ++D++ + G  +  R V D   +K  + +
Sbjct: 537 SHAGLVEKGRHYFNSMLESYGITPCEDHYARMVDLFCRAGMFSYARIVIDSMPSKPGAPV 596

Query: 387 WNTMISALTQHG 398
           W  +++    HG
Sbjct: 597 WEALLAGCRIHG 608


>gi|48716903|dbj|BAD23598.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
          Length = 755

 Score =  368 bits (944), Expect = 6e-99,   Method: Compositional matrix adjust.
 Identities = 182/503 (36%), Positives = 298/503 (59%), Gaps = 9/503 (1%)

Query: 92  NHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVV 151
           N +++ Y + G   +AR +F+     ++ S+N ++SGY   G M  AR LFD M  RDVV
Sbjct: 166 NGMLAAYVRNGRVEEARGLFNSRTEWDVISWNALMSGYVQWGKMSEARELFDRMPGRDVV 225

Query: 152 SWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQV 211
           SWN M+ GYA+ G + E  + +       +    F++  +++   +   L+  R+V   +
Sbjct: 226 SWNIMVSGYARRGDMVEARRLFDAAPVRDV----FTWTAVVSGYAQNGMLEEARRVFDAM 281

Query: 212 LVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESAS 271
                  N V  +++V AY +   + +A+ LF+    R+V +W TM++GYA+ G +E A 
Sbjct: 282 PER----NAVSWNAMVAAYIQRRMMDEAKELFNMMPCRNVASWNTMLTGYAQAGMLEEAK 337

Query: 272 KLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIV 331
            +F+ MP+K+ VSW  ++A Y++ G  ++ L+LF  M       N+  F+  L  CA I 
Sbjct: 338 AVFDTMPQKDAVSWAAMLAAYSQGGCSEETLQLFIEMGRCGEWVNRSAFACVLSTCADIA 397

Query: 332 SLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMI 391
           +L+ G Q+HG LIR  +     V ++L+ MY KCG + D R  F+  + + + + WNTMI
Sbjct: 398 ALECGMQLHGRLIRAGYGVGCFVGNALLAMYFKCGNMEDARNAFEEMEER-DVVSWNTMI 456

Query: 392 SALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGI 451
           +   +HG+ ++A+ +F  M  +S KPD ITL  +L AC+HSGLV++G++YF SM HD G+
Sbjct: 457 AGYARHGFGKEALEIFDMMRTTSTKPDDITLVGVLAACSHSGLVEKGISYFYSMHHDFGV 516

Query: 452 IPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVD 511
               EH+ C+I+LL +AG   +  + ++ MP+E DS +W AL G  RIH N ++GR   +
Sbjct: 517 TAKPEHYTCMIDLLGRAGRLAEAHDLMKDMPFEPDSTMWGALLGASRIHRNPELGRSAAE 576

Query: 512 QLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFS 571
           ++ +  P+++  + LLS+IY++ GK R   K+R ++ ER  KK    SWIE++NKVH FS
Sbjct: 577 KIFELEPENAGMYVLLSNIYASSGKWRDARKMRVMMEERGVKKVPGFSWIEVQNKVHTFS 636

Query: 572 VSDSLHPMRDVLYSVLEQLAGQM 594
             D +HP ++ +Y+ LE L  +M
Sbjct: 637 AGDCVHPEKEKIYAFLEDLDMRM 659



 Score =  172 bits (435), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 113/419 (26%), Positives = 199/419 (47%), Gaps = 56/419 (13%)

Query: 86  PTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNM 145
           P  +  N L+       S  DAR +FD++PV++  +YN M+S +AN G++  AR+ FD  
Sbjct: 98  PDNYSYNTLLHALAVSSSLADARGLFDEMPVRDSVTYNVMISSHANHGLVSLARHYFDLA 157

Query: 146 AERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTR 205
            E+D VSWN M+  Y ++G VEE    +     + +     S+  +++  V+  ++   R
Sbjct: 158 PEKDAVSWNGMLAAYVRNGRVEEARGLFNSRTEWDV----ISWNALMSGYVQWGKMSEAR 213

Query: 206 QVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLG 265
           ++  ++       +VV  + +V  YA+ G++ +ARRLFD    RDV TWT +VSGYA+ G
Sbjct: 214 ELFDRMPG----RDVVSWNIMVSGYARRGDMVEARRLFDAAPVRDVFTWTAVVSGYAQNG 269

Query: 266 DMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLC 325
            +E A ++F+ MPE+N VSW  ++A Y +  +  +A ELF  M                 
Sbjct: 270 MLEEARRVFDAMPERNAVSWNAMVAAYIQRRMMDEAKELFNMM----------------- 312

Query: 326 ACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSM 385
            C ++ S                       ++++  Y++ G L + + VFD    K +++
Sbjct: 313 PCRNVASW----------------------NTMLTGYAQAGMLEEAKAVFDTMPQK-DAV 349

Query: 386 LWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESM 445
            W  M++A +Q G  E+ ++LF +M R     ++   A +L+ C     ++ G+     +
Sbjct: 350 SWAAMLAAYSQGGCSEETLQLFIEMGRCGEWVNRSAFACVLSTCADIAALECGMQLHGRL 409

Query: 446 T---HDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHG 501
               + +G          L+ +  + G  +   N  E+M  E D   WN +      HG
Sbjct: 410 IRAGYGVGCFVGN----ALLAMYFKCGNMEDARNAFEEME-ERDVVSWNTMIAGYARHG 463



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 50/167 (29%), Positives = 87/167 (52%), Gaps = 7/167 (4%)

Query: 23  SFLSLISKGQLSEAISSLDLLAQR-GIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLT 81
           + L+  S+G  SE    L +   R G  +     A +L  CA+  +L+ G ++H  L + 
Sbjct: 353 AMLAAYSQGGCSEETLQLFIEMGRCGEWVNRSAFACVLSTCADIAALECGMQLHGRL-IR 411

Query: 82  QRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNL 141
                  F+ N L++MYFKCG+  DAR  F+++  +++ S+N M++GYA  G  K A  +
Sbjct: 412 AGYGVGCFVGNALLAMYFKCGNMEDARNAFEEMEERDVVSWNTMIAGYARHGFGKEALEI 471

Query: 142 FDNM----AERDVVSWNTMIIGYAKSGAVEEGLK-FYKVLRRFSISC 183
           FD M     + D ++   ++   + SG VE+G+  FY +   F ++ 
Sbjct: 472 FDMMRTTSTKPDDITLVGVLAACSHSGLVEKGISYFYSMHHDFGVTA 518


>gi|125563252|gb|EAZ08632.1| hypothetical protein OsI_30906 [Oryza sativa Indica Group]
          Length = 755

 Score =  367 bits (942), Expect = 9e-99,   Method: Compositional matrix adjust.
 Identities = 182/503 (36%), Positives = 297/503 (59%), Gaps = 9/503 (1%)

Query: 92  NHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVV 151
           N +++ Y + G   +AR +F+     +  S+N ++SGY   G M  AR LFD M  RDVV
Sbjct: 166 NGMLAAYVRNGRVEEARGLFNSRTEWDAISWNALMSGYVQWGKMSEARELFDRMPGRDVV 225

Query: 152 SWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQV 211
           SWN M+ GYA+ G + E  + +       +    F++  +++   +   L+  R+V   +
Sbjct: 226 SWNIMVSGYARRGDMVEARRLFDAAPVRDV----FTWTAVVSGYAQNGMLEEARRVFDAM 281

Query: 212 LVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESAS 271
                  N V  +++V AY +   + +A+ LF+    R+V +W TM++GYA+ G +E A 
Sbjct: 282 PER----NAVSWNAMVAAYIQRRMMDEAKELFNMMPCRNVASWNTMLTGYAQAGMLEEAK 337

Query: 272 KLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIV 331
            +F+ MP+K+ VSW  ++A Y++ G  ++ L+LF  M       N+  F+  L  CA I 
Sbjct: 338 AVFDTMPQKDAVSWAAMLAAYSQGGCSEETLQLFIEMGRCGEWVNRSAFACVLSTCADIA 397

Query: 332 SLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMI 391
           +L+ G Q+HG LIR  +     V ++L+ MY KCG + D R  F+  + + + + WNTMI
Sbjct: 398 ALECGMQLHGRLIRAGYGVGCFVGNALLAMYFKCGNMEDARNAFEEMEER-DVVSWNTMI 456

Query: 392 SALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGI 451
           +   +HG+ ++A+ +F  M  +S KPD ITL  +L AC+HSGLV++G++YF SM HD G+
Sbjct: 457 AGYARHGFGKEALEIFDMMRTTSTKPDDITLVGVLAACSHSGLVEKGISYFYSMHHDFGV 516

Query: 452 IPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVD 511
               EH+ C+I+LL +AG   +  + ++ MP+E DS +W AL G  RIH N ++GR   +
Sbjct: 517 TAKPEHYTCMIDLLGRAGRLAEAHDLMKDMPFEPDSTMWGALLGASRIHRNPELGRSAAE 576

Query: 512 QLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFS 571
           ++ +  P+++  + LLS+IY++ GK R   K+R ++ ER  KK    SWIE++NKVH FS
Sbjct: 577 KIFELEPENAGMYVLLSNIYASSGKWRDARKMRVMMEERGVKKVPGFSWIEVQNKVHTFS 636

Query: 572 VSDSLHPMRDVLYSVLEQLAGQM 594
             D +HP ++ +Y+ LE L  +M
Sbjct: 637 AGDCVHPEKEKIYAFLEDLDMRM 659



 Score =  171 bits (433), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 113/419 (26%), Positives = 199/419 (47%), Gaps = 56/419 (13%)

Query: 86  PTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNM 145
           P  +  N L+       S  DAR +FD++PV++  +YN M+S +AN G++  AR+ FD  
Sbjct: 98  PDNYSYNTLLHALAVSSSLADARGLFDEMPVRDSVTYNVMISSHANHGLVSLARHYFDLA 157

Query: 146 AERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTR 205
            E+D VSWN M+  Y ++G VEE    +     +    +  S+  +++  V+  ++   R
Sbjct: 158 PEKDAVSWNGMLAAYVRNGRVEEARGLFNSRTEW----DAISWNALMSGYVQWGKMSEAR 213

Query: 206 QVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLG 265
           ++  ++       +VV  + +V  YA+ G++ +ARRLFD    RDV TWT +VSGYA+ G
Sbjct: 214 ELFDRMPG----RDVVSWNIMVSGYARRGDMVEARRLFDAAPVRDVFTWTAVVSGYAQNG 269

Query: 266 DMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLC 325
            +E A ++F+ MPE+N VSW  ++A Y +  +  +A ELF  M                 
Sbjct: 270 MLEEARRVFDAMPERNAVSWNAMVAAYIQRRMMDEAKELFNMM----------------- 312

Query: 326 ACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSM 385
            C ++ S                       ++++  Y++ G L + + VFD    K +++
Sbjct: 313 PCRNVASW----------------------NTMLTGYAQAGMLEEAKAVFDTMPQK-DAV 349

Query: 386 LWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESM 445
            W  M++A +Q G  E+ ++LF +M R     ++   A +L+ C     ++ G+     +
Sbjct: 350 SWAAMLAAYSQGGCSEETLQLFIEMGRCGEWVNRSAFACVLSTCADIAALECGMQLHGRL 409

Query: 446 T---HDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHG 501
               + +G          L+ +  + G  +   N  E+M  E D   WN +      HG
Sbjct: 410 IRAGYGVGCFVGN----ALLAMYFKCGNMEDARNAFEEME-ERDVVSWNTMIAGYARHG 463



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 50/167 (29%), Positives = 87/167 (52%), Gaps = 7/167 (4%)

Query: 23  SFLSLISKGQLSEAISSLDLLAQR-GIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLT 81
           + L+  S+G  SE    L +   R G  +     A +L  CA+  +L+ G ++H  L + 
Sbjct: 353 AMLAAYSQGGCSEETLQLFIEMGRCGEWVNRSAFACVLSTCADIAALECGMQLHGRL-IR 411

Query: 82  QRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNL 141
                  F+ N L++MYFKCG+  DAR  F+++  +++ S+N M++GYA  G  K A  +
Sbjct: 412 AGYGVGCFVGNALLAMYFKCGNMEDARNAFEEMEERDVVSWNTMIAGYARHGFGKEALEI 471

Query: 142 FDNM----AERDVVSWNTMIIGYAKSGAVEEGLK-FYKVLRRFSISC 183
           FD M     + D ++   ++   + SG VE+G+  FY +   F ++ 
Sbjct: 472 FDMMRTTSTKPDDITLVGVLAACSHSGLVEKGISYFYSMHHDFGVTA 518


>gi|449470118|ref|XP_004152765.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Cucumis sativus]
          Length = 797

 Score =  366 bits (940), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 182/515 (35%), Positives = 300/515 (58%), Gaps = 13/515 (2%)

Query: 92  NHLISMYFK--------CGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFD 143
           N L+S+Y K        C + V ARK+FD++P ++  ++  M++GY     +  AR +F+
Sbjct: 188 NALLSVYVKRASELGIPCSAMVSARKLFDEMPKRDELTWTTMITGYVRNDDLNGAREVFE 247

Query: 144 NMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKL 203
            M E    +WN MI GY   G  +E L   + +R   I  ++ ++  I++ C  +   ++
Sbjct: 248 AMVENLGAAWNAMISGYVHCGCFQEALTLCRKMRFLGIQFDDITYTTIISACANVGSFQM 307

Query: 204 TRQVHGQVLVTGFLSN----VVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVS 259
            +Q+H  +L      N    + +S++++  Y K  ++ +AR++F     R+++TW  ++S
Sbjct: 308 GKQMHAYILKNELNPNHSFCLSVSNALITLYCKNNKVDEARKIFYAMPVRNIITWNAILS 367

Query: 260 GYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHT 319
           GY   G ME A   F EMP KN ++ T +I+G  +NG G + L+LF +M +    P    
Sbjct: 368 GYVNAGRMEEAKSFFEEMPVKNLLTLTVMISGLAQNGFGDEGLKLFKQMRLDGFEPCDFA 427

Query: 320 FSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTD 379
           F+  L AC+ + +L++G+Q+H  L+   + S+  V +++I MY+KCG +     VF +T 
Sbjct: 428 FAGALTACSVLGALENGRQLHAQLVHLGYESSLSVGNAMISMYAKCGVVEAAESVF-VTM 486

Query: 380 NKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGL 439
              + + WN+MI+AL QHG+  +AI LF  M++  V PD+IT   +L AC+H+GLV++G 
Sbjct: 487 PSVDLVSWNSMIAALGQHGHGVKAIELFDQMLKEGVFPDRITFLTVLTACSHAGLVEKGR 546

Query: 440 TYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRI 499
            YF SM    GI P ++H+A +++L  +AG        ++ MP +  + +W AL   CRI
Sbjct: 547 HYFNSMLESYGITPCEDHYARMVDLFCRAGMFSYARIVIDSMPSKPGAPVWEALLAGCRI 606

Query: 500 HGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAIS 559
           HGN+D+G +  +QL    PQ+  T+ LLS+IY+ +G+   V KVR+L+ ++  +KE A S
Sbjct: 607 HGNMDLGIEAAEQLFKLMPQNDGTYVLLSNIYADVGRWNDVAKVRKLMRDQAVRKEPACS 666

Query: 560 WIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQM 594
           WIE+ENKVH F V D +HP    +Y  LEQL  +M
Sbjct: 667 WIEVENKVHVFMVDDDVHPEVLSVYRYLEQLGLEM 701



 Score =  202 bits (515), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 153/553 (27%), Positives = 258/553 (46%), Gaps = 61/553 (11%)

Query: 48  IRLPAETLAFILQQCA--ESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDV 105
           IRL A   A  LQ C+  +  S  L + VH H+  +  K    FL N L+ MY K  + V
Sbjct: 7   IRLLANRYAEKLQLCSPQDPASFSLARAVHAHMIASGFKPRGHFL-NRLLEMYCKSSNVV 65

Query: 106 DARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDN--MAERDVVSWNTMIIGYAKS 163
            AR++F++IP  +  +   +++ Y  LG ++  R +F+   +  RD V +N MI GYA +
Sbjct: 66  YARQLFEEIPNPDAIARTTLITAYCALGNLELGREIFNGTPLYMRDSVFYNAMITGYAHN 125

Query: 164 GAVEEGLKFYKVLRRFSISCNEFSFAGILTICVK-LEELKLTRQVHGQVLVTGFLSNVVI 222
           G     L+ ++ +RR     ++F+F  +L+  V  +   +   Q+H  V+ TG      +
Sbjct: 126 GDGHSALELFRAMRRDDFRPDDFTFTSVLSALVLFVGNEQQCGQMHCAVVKTGM---GCV 182

Query: 223 SSSIVDA----YAK--------CGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESA 270
           SSS+++A    Y K        C  +  AR+LFDE   RD LTWTTM++GY +  D+  A
Sbjct: 183 SSSVLNALLSVYVKRASELGIPCSAMVSARKLFDEMPKRDELTWTTMITGYVRNDDLNGA 242

Query: 271 SKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASI 330
            ++F  M E    +W  +I+GY   G  Q+AL L  +M  L I+ +  T+++ + ACA++
Sbjct: 243 REVFEAMVENLGAAWNAMISGYVHCGCFQEALTLCRKMRFLGIQFDDITYTTIISACANV 302

Query: 331 VSLKHGKQVHGFLIRTNFRSN----TIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSML 386
            S + GKQ+H ++++     N      V ++LI +Y K   +++ R++F     + N + 
Sbjct: 303 GSFQMGKQMHAYILKNELNPNHSFCLSVSNALITLYCKNNKVDEARKIFYAMPVR-NIIT 361

Query: 387 WN-------------------------------TMISALTQHGYDEQAIRLFHDMVRSSV 415
           WN                                MIS L Q+G+ ++ ++LF  M     
Sbjct: 362 WNAILSGYVNAGRMEEAKSFFEEMPVKNLLTLTVMISGLAQNGFGDEGLKLFKQMRLDGF 421

Query: 416 KPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLM 475
           +P     A  L AC+  G ++ G      + H LG   +      +I + A+ G  +   
Sbjct: 422 EPCDFAFAGALTACSVLGALENGRQLHAQLVH-LGYESSLSVGNAMISMYAKCGVVEAAE 480

Query: 476 NQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALG 535
           +    MP   D   WN++      HG+     ++ DQ++ +         L  ++ +A  
Sbjct: 481 SVFVTMP-SVDLVSWNSMIAALGQHGHGVKAIELFDQMLKEGVFPDRITFL--TVLTACS 537

Query: 536 KGRLVEKVRQLIN 548
              LVEK R   N
Sbjct: 538 HAGLVEKGRHYFN 550



 Score =  165 bits (418), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 100/372 (26%), Positives = 188/372 (50%), Gaps = 35/372 (9%)

Query: 31  GQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTF- 89
           G   EA++    +   GI+    T   I+  CA   S ++GK++H ++   +     +F 
Sbjct: 268 GCFQEALTLCRKMRFLGIQFDDITYTTIISACANVGSFQMGKQMHAYILKNELNPNHSFC 327

Query: 90  --LSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAE 147
             +SN LI++Y K     +ARK+F  +PV+N+ ++N +LSGY N G M+ A++ F+ M  
Sbjct: 328 LSVSNALITLYCKNNKVDEARKIFYAMPVRNIITWNAILSGYVNAGRMEEAKSFFEEMPV 387

Query: 148 RDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQV 207
           +++++   MI G A++G  +EGLK +K +R       +F+FAG LT C  L  L+  RQ+
Sbjct: 388 KNLLTLTVMISGLAQNGFGDEGLKLFKQMRLDGFEPCDFAFAGALTACSVLGALENGRQL 447

Query: 208 HGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDM 267
           H Q++  G+ S++ + ++++  YAKCG +  A  +F    + D+++W +M          
Sbjct: 448 HAQLVHLGYESSLSVGNAMISMYAKCGVVEAAESVFVTMPSVDLVSWNSM---------- 497

Query: 268 ESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCAC 327
                                IA   ++G G KA+ELF +M+   + P++ TF + L AC
Sbjct: 498 ---------------------IAALGQHGHGVKAIELFDQMLKEGVFPDRITFLTVLTAC 536

Query: 328 ASIVSLKHGKQVHGFLIRT-NFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSML 386
           +    ++ G+     ++ +          + ++D++ + G  +  R V D   +K  + +
Sbjct: 537 SHAGLVEKGRHYFNSMLESYGITPCEDHYARMVDLFCRAGMFSYARIVIDSMPSKPGAPV 596

Query: 387 WNTMISALTQHG 398
           W  +++    HG
Sbjct: 597 WEALLAGCRIHG 608


>gi|125605235|gb|EAZ44271.1| hypothetical protein OsJ_28890 [Oryza sativa Japonica Group]
          Length = 630

 Score =  366 bits (940), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 184/518 (35%), Positives = 303/518 (58%), Gaps = 11/518 (2%)

Query: 77  HLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMK 136
           +  L   K   ++  N +++ Y + G   +AR +F+     ++ S+N ++SGY   G M 
Sbjct: 28  YFDLAPEKDAVSW--NGMLAAYVRNGRVEEARGLFNSRTEWDVISWNALMSGYVQWGKMS 85

Query: 137 HARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICV 196
            AR LFD M  RDVVSWN M+ GYA+ G + E  + +       +    F++  +++   
Sbjct: 86  EARELFDRMPGRDVVSWNIMVSGYARRGDMVEARRLFDAAPVRDV----FTWTAVVSGYA 141

Query: 197 KLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTT 256
           +   L+  R+V   +       N V  +++V AY +   + +A+ LF+    R+V +W T
Sbjct: 142 QNGMLEEARRVFDAMPE----RNAVSWNAMVAAYIQRRMMDEAKELFNMMPCRNVASWNT 197

Query: 257 MVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPN 316
           M++GYA+ G +E A  +F+ MP+K+ VSW  ++A Y++ G  ++ L+LF  M       N
Sbjct: 198 MLTGYAQAGMLEEAKAVFDTMPQKDAVSWAAMLAAYSQGGCSEETLQLFIEMGRCGEWVN 257

Query: 317 QHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFD 376
           +  F+  L  CA I +L+ G Q+HG LIR  +     V ++L+ MY KCG + D R  F+
Sbjct: 258 RSAFACVLSTCADIAALECGMQLHGRLIRAGYGVGCFVGNALLAMYFKCGNMEDARNAFE 317

Query: 377 LTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQ 436
             + + + + WNTMI+   +HG+ ++A+ +F  M  +S KPD ITL  +L AC+HSGLV+
Sbjct: 318 EMEER-DVVSWNTMIAGYARHGFGKEALEIFDMMRTTSTKPDDITLVGVLAACSHSGLVE 376

Query: 437 EGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGV 496
           +G++YF SM HD G+    EH+ C+I+LL +AG   +  + ++ MP+E DS +W AL G 
Sbjct: 377 KGISYFYSMHHDFGVTAKPEHYTCMIDLLGRAGRLAEAHDLMKDMPFEPDSTMWGALLGA 436

Query: 497 CRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQ 556
            RIH N ++GR   +++ +  P+++  + LLS+IY++ GK R   K+R ++ ER  KK  
Sbjct: 437 SRIHRNPELGRSAAEKIFELEPENAGMYVLLSNIYASSGKWRDARKMRVMMEERGVKKVP 496

Query: 557 AISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQM 594
             SWIE++NKVH FS  D +HP ++ +Y+ LE L  +M
Sbjct: 497 GFSWIEVQNKVHTFSAGDCVHPEKEKIYAFLEDLDMRM 534



 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 111/432 (25%), Positives = 200/432 (46%), Gaps = 58/432 (13%)

Query: 114 IPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFY 173
           +PV++  +YN M+S +AN G++  AR+ FD   E+D VSWN M+  Y ++G VEE    +
Sbjct: 1   MPVRDSVTYNVMISSHANHGLVSLARHYFDLAPEKDAVSWNGMLAAYVRNGRVEEARGLF 60

Query: 174 KVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKC 233
                + +     S+  +++  V+  ++   R++  ++       +VV  + +V  YA+ 
Sbjct: 61  NSRTEWDV----ISWNALMSGYVQWGKMSEARELFDRMPG----RDVVSWNIMVSGYARR 112

Query: 234 GELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYT 293
           G++ +ARRLFD    RDV TWT +VSGYA+ G +E A ++F+ MPE+N VSW  ++A Y 
Sbjct: 113 GDMVEARRLFDAAPVRDVFTWTAVVSGYAQNGMLEEARRVFDAMPERNAVSWNAMVAAYI 172

Query: 294 RNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTI 353
           +  +  +A ELF  M                  C ++ S                     
Sbjct: 173 QRRMMDEAKELFNMM-----------------PCRNVASW-------------------- 195

Query: 354 VMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRS 413
             ++++  Y++ G L + + VFD    K +++ W  M++A +Q G  E+ ++LF +M R 
Sbjct: 196 --NTMLTGYAQAGMLEEAKAVFDTMPQK-DAVSWAAMLAAYSQGGCSEETLQLFIEMGRC 252

Query: 414 SVKPDKITLAVILNACTHSGLVQEGLTYFESMT---HDLGIIPNQEHHACLIELLAQAGC 470
               ++   A +L+ C     ++ G+     +    + +G          L+ +  + G 
Sbjct: 253 GEWVNRSAFACVLSTCADIAALECGMQLHGRLIRAGYGVGCFVGN----ALLAMYFKCGN 308

Query: 471 SDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSI 530
            +   N  E+M  E D   WN +      HG      ++ D +  +   +      L  +
Sbjct: 309 MEDARNAFEEME-ERDVVSWNTMIAGYARHGFGKEALEIFDMM--RTTSTKPDDITLVGV 365

Query: 531 YSALGKGRLVEK 542
            +A     LVEK
Sbjct: 366 LAACSHSGLVEK 377



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 50/166 (30%), Positives = 87/166 (52%), Gaps = 7/166 (4%)

Query: 23  SFLSLISKGQLSEAISSLDLLAQR-GIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLT 81
           + L+  S+G  SE    L +   R G  +     A +L  CA+  +L+ G ++H  L + 
Sbjct: 228 AMLAAYSQGGCSEETLQLFIEMGRCGEWVNRSAFACVLSTCADIAALECGMQLHGRL-IR 286

Query: 82  QRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNL 141
                  F+ N L++MYFKCG+  DAR  F+++  +++ S+N M++GYA  G  K A  +
Sbjct: 287 AGYGVGCFVGNALLAMYFKCGNMEDARNAFEEMEERDVVSWNTMIAGYARHGFGKEALEI 346

Query: 142 FDNM----AERDVVSWNTMIIGYAKSGAVEEGLK-FYKVLRRFSIS 182
           FD M     + D ++   ++   + SG VE+G+  FY +   F ++
Sbjct: 347 FDMMRTTSTKPDDITLVGVLAACSHSGLVEKGISYFYSMHHDFGVT 392


>gi|359481906|ref|XP_003632690.1| PREDICTED: pentatricopeptide repeat-containing protein At2g35030,
           mitochondrial-like [Vitis vinifera]
          Length = 635

 Score =  366 bits (939), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 192/554 (34%), Positives = 318/554 (57%), Gaps = 30/554 (5%)

Query: 69  KLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVK-NLFSYNNMLS 127
           K G+ +       + + P       +IS Y KCG   +AR++FD++  K N+ ++  M+ 
Sbjct: 64  KDGRIMEARRLFDEMREPDVITWTTVISGYIKCGMIEEARRLFDRVDAKKNVVTWTAMVG 123

Query: 128 GYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLK-FYKVLRRFSISCNEF 186
           GY     +  A  LF+ M  ++VVSWNTMI GYA++G ++  +  F K+  R  +S N  
Sbjct: 124 GYIRSNKISDAEKLFNEMPNKNVVSWNTMIDGYAQNGRIDSAMYLFEKMPERNVVSWN-- 181

Query: 187 SFAGILTICVKLEELKL------TRQVHGQVLVTGFLS------------------NVVI 222
           +   +L  C ++EE +        R V     +   LS                  NVV 
Sbjct: 182 TVMSMLAQCGRIEEARRLFDRMPERDVISWTAMIAGLSKNGRIDEARLLFDRMPERNVVS 241

Query: 223 SSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNP 282
            ++++  YA+   L +A  LF+    RD+ +W TM++G  + GD+  A KLFNEMP+KN 
Sbjct: 242 WNAMITGYAQNLRLDEALDLFERMPERDLPSWNTMITGLIQNGDLRRARKLFNEMPKKNV 301

Query: 283 VSWTTLIAGYTRNGLGQKALELFTRMMILR-IRPNQHTFSSCLCACASIVSLKHGKQVHG 341
           +SWTT+I G  + G  ++AL++F+RM+     +PNQ TF S L AC+++  L  G+QVH 
Sbjct: 302 ISWTTMITGCVQEGESEEALKIFSRMLSTNGAKPNQGTFVSVLGACSNLAGLGEGQQVHQ 361

Query: 342 FLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSML-WNTMISALTQHGYD 400
            + +T ++ +T V+S+LI+MYSKCG L   R++FD     +  ++ WN +I+A   HGY 
Sbjct: 362 IISKTVYQDSTFVVSALINMYSKCGELGTARKMFDDGMTSQRDLVSWNGIIAAYAHHGYG 421

Query: 401 EQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHAC 460
           ++AI  F +M +S  KPD +T   +L+AC+H+GLV+EGL YF+ +  D  I+  ++H+AC
Sbjct: 422 KEAINFFKEMRKSGFKPDDVTYVGLLSACSHAGLVEEGLKYFDELVKDRSILVREDHYAC 481

Query: 461 LIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQS 520
           L++L  +AG   +    +E++  +  + +W AL   C +H N+ +G++   +L++  P++
Sbjct: 482 LVDLCGRAGRLKEAFGFIERLETKPSARVWGALLAGCNVHANVKIGKQAAKKLLEVEPEN 541

Query: 521 SATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMR 580
           + T+ LLS+IY++ GK R   +VR  + ++  KK+   SWIE+ N+VH F V D  H   
Sbjct: 542 AGTYLLLSNIYASTGKWREAARVRLKMKDKGLKKQPGCSWIEVGNRVHVFVVGDKSHSQS 601

Query: 581 DVLYSVLEQLAGQM 594
            ++YS+L  L  +M
Sbjct: 602 KLIYSLLRDLHSKM 615



 Score =  146 bits (368), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 118/444 (26%), Positives = 204/444 (45%), Gaps = 65/444 (14%)

Query: 106 DARKVFDKIPVK------NLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIG 159
           D R     IP K      N+   N M++  +  G +  AR LFD M E DV++W T+I G
Sbjct: 33  DYRTAKISIPRKDFTVDGNVARCNWMITNLSKDGRIMEARRLFDEMREPDVITWTTVISG 92

Query: 160 YAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSN 219
           Y K G +EE  + +                                +V  +        N
Sbjct: 93  YIKCGMIEEARRLFD-------------------------------RVDAK-------KN 114

Query: 220 VVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPE 279
           VV  +++V  Y +  ++SDA +LF+E   ++V++W TM+ GYA+ G ++SA  LF +MPE
Sbjct: 115 VVTWTAMVGGYIRSNKISDAEKLFNEMPNKNVVSWNTMIDGYAQNGRIDSAMYLFEKMPE 174

Query: 280 KNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSL-KHGKQ 338
           +N VSW T+++   + G  ++A  LF RM      P +   S      A I  L K+G+ 
Sbjct: 175 RNVVSWNTVMSMLAQCGRIEEARRLFDRM------PERDVIS----WTAMIAGLSKNGRI 224

Query: 339 VHGFLIRTNF-RSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQH 397
               L+       N +  +++I  Y++   L++   +F+    ++    WNTMI+ L Q+
Sbjct: 225 DEARLLFDRMPERNVVSWNAMITGYAQNLRLDEALDLFERMPERDLPS-WNTMITGLIQN 283

Query: 398 GYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEH 457
           G   +A +LF++M + +V    I+   ++  C   G  +E L  F  M    G  PNQ  
Sbjct: 284 GDLRRARKLFNEMPKKNV----ISWTTMITGCVQEGESEEALKIFSRMLSTNGAKPNQGT 339

Query: 458 HACLIEL---LAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLI 514
              ++     LA  G   Q+   + K  Y+  +++ +AL  +    G +   RK+ D  +
Sbjct: 340 FVSVLGACSNLAGLGEGQQVHQIISKTVYQDSTFVVSALINMYSKCGELGTARKMFDDGM 399

Query: 515 DQNPQSSATHGLLSSIYSALGKGR 538
                  + +G++++ Y+  G G+
Sbjct: 400 TSQRDLVSWNGIIAA-YAHHGYGK 422


>gi|15225445|ref|NP_178983.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206168|sp|Q9SIT7.1|PP151_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g13600
 gi|4558664|gb|AAD22682.1| hypothetical protein [Arabidopsis thaliana]
 gi|330251150|gb|AEC06244.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 697

 Score =  364 bits (935), Expect = 6e-98,   Method: Compositional matrix adjust.
 Identities = 194/595 (32%), Positives = 330/595 (55%), Gaps = 49/595 (8%)

Query: 13  KNLP--NNCLIQSFLSLISK-GQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLK 69
           +++P  + C   S +S  ++  +  EA+    ++ + G  L   + A +L  C+    + 
Sbjct: 110 RSMPERDQCTWNSMVSGFAQHDRCEEALCYFAMMHKEGFVLNEYSFASVLSACSGLNDMN 169

Query: 70  LGKRVHLHLKLTQRKTP---TTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNML 126
            G +VH  +     K+P     ++ + L+ MY KCG+  DA++VF               
Sbjct: 170 KGVQVHSLIA----KSPFLSDVYIGSALVDMYSKCGNVNDAQRVF--------------- 210

Query: 127 SGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEF 186
                           D M +R+VVSWN++I  + ++G   E L  ++++    +  +E 
Sbjct: 211 ----------------DEMGDRNVVSWNSLITCFEQNGPAVEALDVFQMMLESRVEPDEV 254

Query: 187 SFAGILTICVKLEELKLTRQVHGQVLVTGFLSN-VVISSSIVDAYAKCGELSDARRLFDE 245
           + A +++ C  L  +K+ ++VHG+V+    L N +++S++ VD YAKC  + +AR +FD 
Sbjct: 255 TLASVISACASLSAIKVGQEVHGRVVKNDKLRNDIILSNAFVDMYAKCSRIKEARFIFDS 314

Query: 246 TDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELF 305
              R+V+  T+M+SGYA     ++A  +F +M E+N VSW  LIAGYT+NG  ++AL LF
Sbjct: 315 MPIRNVIAETSMISGYAMAASTKAARLMFTKMAERNVVSWNALIAGYTQNGENEEALSLF 374

Query: 306 TRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVH------GFLIRTNFRSNTIVMSSLI 359
             +    + P  ++F++ L ACA +  L  G Q H      GF  ++    +  V +SLI
Sbjct: 375 CLLKRESVCPTHYSFANILKACADLAELHLGMQAHVHVLKHGFKFQSGEEDDIFVGNSLI 434

Query: 360 DMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDK 419
           DMY KCGC+ +G  VF     ++  + WN MI    Q+GY  +A+ LF +M+ S  KPD 
Sbjct: 435 DMYVKCGCVEEGYLVFRKMMERD-CVSWNAMIIGFAQNGYGNEALELFREMLESGEKPDH 493

Query: 420 ITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLE 479
           IT+  +L+AC H+G V+EG  YF SMT D G+ P ++H+ C+++LL +AG  ++  + +E
Sbjct: 494 ITMIGVLSACGHAGFVEEGRHYFSSMTRDFGVAPLRDHYTCMVDLLGRAGFLEEAKSMIE 553

Query: 480 KMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRL 539
           +MP + DS +W +L   C++H NI +G+ V ++L++  P +S  + LLS++Y+ LGK   
Sbjct: 554 EMPMQPDSVIWGSLLAACKVHRNITLGKYVAEKLLEVEPSNSGPYVLLSNMYAELGKWED 613

Query: 540 VEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQM 594
           V  VR+ + +    K+   SWI+I+   H F V D  HP +  ++S+L+ L  +M
Sbjct: 614 VMNVRKSMRKEGVTKQPGCSWIKIQGHDHVFMVKDKSHPRKKQIHSLLDILIAEM 668



 Score =  238 bits (608), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 158/551 (28%), Positives = 272/551 (49%), Gaps = 84/551 (15%)

Query: 38  SSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRK-TPTTFLSNHLIS 96
           S L L A       +   A +L  C +SK   +  R ++H  + +   +   F+ N LI 
Sbjct: 5   SFLKLAADLSSFTDSSPFAKLLDSCIKSKLSAIYVR-YVHASVIKSGFSNEIFIQNRLID 63

Query: 97  MYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTM 156
            Y KCGS  D R+VFDK+P +N++++N++++G   LG +  A +LF +M ERD  +WN+M
Sbjct: 64  AYSKCGSLEDGRQVFDKMPQRNIYTWNSVVTGLTKLGFLDEADSLFRSMPERDQCTWNSM 123

Query: 157 IIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGF 216
           + G+A+    EE L ++ ++ +     NE+SFA +L+ C  L ++    QVH  +  + F
Sbjct: 124 VSGFAQHDRCEEALCYFAMMHKEGFVLNEYSFASVLSACSGLNDMNKGVQVHSLIAKSPF 183

Query: 217 LSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNE 276
           LS+V I S++VD Y+KCG ++DA+R+FDE   R+V++W                      
Sbjct: 184 LSDVYIGSALVDMYSKCGNVNDAQRVFDEMGDRNVVSW---------------------- 221

Query: 277 MPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHG 336
                     +LI  + +NG   +AL++F  M+  R+ P++ T +S + ACAS+ ++K G
Sbjct: 222 ---------NSLITCFEQNGPAVEALDVFQMMLESRVEPDEVTLASVISACASLSAIKVG 272

Query: 337 KQVHGFLIRTNFRSNTIVMS-SLIDMYSKCGCLNDGRQVFDLTDNK----ENSML----- 386
           ++VHG +++ +   N I++S + +DMY+KC  + + R +FD    +    E SM+     
Sbjct: 273 QEVHGRVVKNDKLRNDIILSNAFVDMYAKCSRIKEARFIFDSMPIRNVIAETSMISGYAM 332

Query: 387 ---------------------WNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVI 425
                                WN +I+  TQ+G +E+A+ LF  + R SV P   + A I
Sbjct: 333 AASTKAARLMFTKMAERNVVSWNALIAGYTQNGENEEALSLFCLLKRESVCPTHYSFANI 392

Query: 426 LNAC-----------THSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQL 474
           L AC            H  +++ G   F+S   D   + N      LI++  + GC ++ 
Sbjct: 393 LKACADLAELHLGMQAHVHVLKHGFK-FQSGEEDDIFVGNS-----LIDMYVKCGCVEEG 446

Query: 475 MNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSAL 534
                KM  E D   WNA+      +G  +   ++  ++++   +    H  +  + SA 
Sbjct: 447 YLVFRKM-MERDCVSWNAMIIGFAQNGYGNEALELFREMLESGEKPD--HITMIGVLSAC 503

Query: 535 GKGRLVEKVRQ 545
           G    VE+ R 
Sbjct: 504 GHAGFVEEGRH 514


>gi|357464699|ref|XP_003602631.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355491679|gb|AES72882.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 705

 Score =  364 bits (935), Expect = 7e-98,   Method: Compositional matrix adjust.
 Identities = 189/553 (34%), Positives = 319/553 (57%), Gaps = 40/553 (7%)

Query: 59  LQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKN 118
           L  CA    L +G ++H  L    R +   ++ + L+ MY KC     A++ FD + V  
Sbjct: 158 LSACAGLMDLSIGVQIH-GLIAKSRYSLDVYMGSALVDMYSKCRVVASAQRAFDDMDV-- 214

Query: 119 LFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRR 178
                                        R++VSWN++I  Y ++G   + L+ +  +  
Sbjct: 215 -----------------------------RNIVSWNSLITCYEQNGPAGKALEVFVRMMN 245

Query: 179 FSISCNEFSFAGILTICVKLEELKLTRQVHGQVLV-TGFLSNVVISSSIVDAYAKCGELS 237
             I  +E + A + + C  L  ++   Q+H +V+    + +++V+ +++VD YAKC  ++
Sbjct: 246 CGIEPDEITLASVASACASLSAIREGLQIHARVMKHDKYRNDLVLGNALVDMYAKCRRVN 305

Query: 238 DARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGL 297
           +AR +FD    RDV++ T+MVSGYAK   +++A  +F+ M E+N VSW  LIAGYT+NG 
Sbjct: 306 EARLVFDRMPLRDVVSETSMVSGYAKASSVKAARLMFSNMMERNVVSWNALIAGYTQNGE 365

Query: 298 GQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVH------GFLIRTNFRSN 351
            ++A+ LF  +    I P  +TF + L ACA++  LK G+Q H      GF  ++   S+
Sbjct: 366 NEEAVRLFLLLKRESIWPTHYTFGNLLNACANLADLKLGRQAHTHILKHGFWFKSGEDSD 425

Query: 352 TIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMV 411
             V +SLIDMY KCG + DGR VF+    ++N + WN MI    Q+GY  +A+ +F +M+
Sbjct: 426 IFVGNSLIDMYMKCGLVEDGRLVFERMLERDN-VSWNAMIVGYAQNGYGTEALEIFREML 484

Query: 412 RSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCS 471
            S  +PD +T+  +L+AC+H+GLV+EG  YF+SMT + G++P ++H+ C+++LL +AGC 
Sbjct: 485 VSGERPDHVTMIGVLSACSHAGLVEEGRCYFQSMTIEHGLVPVKDHYTCMVDLLGRAGCL 544

Query: 472 DQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIY 531
           D+  N ++ MP E D+ +W +L   C++HGNI +G+ V ++L++ +P +S  + LLS++Y
Sbjct: 545 DEANNLIQTMPMEPDAVVWGSLLAACKVHGNITLGKYVAERLLEIDPLNSGPYVLLSNMY 604

Query: 532 SALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLA 591
           + LG+ + V +VR+ + +    K+   SWI I++ +H F V D  HP +  +Y +L+ L 
Sbjct: 605 AELGRWKDVVRVRKQMRQMGVIKQPGCSWISIQSHLHVFMVKDKRHPHKKDIYLILKILT 664

Query: 592 GQMGEDAPSLDAD 604
            QM       +AD
Sbjct: 665 EQMKRVGYVPEAD 677



 Score =  230 bits (587), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 149/486 (30%), Positives = 240/486 (49%), Gaps = 81/486 (16%)

Query: 50  LPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARK 109
           L +   A +L  C +SKS+   + VH  +  TQ  +   F+ N L+ +Y KCG   DARK
Sbjct: 17  LDSSPFAKLLDTCVKSKSVFEARLVHARIIKTQFSSEI-FIQNRLVDVYGKCGFLEDARK 75

Query: 110 VFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEG 169
           VFD +  +N FS+N +L      G +  A NLF  M ERD  SWN M+ G+A+    EE 
Sbjct: 76  VFDHMQQRNTFSWNAVLGALTKFGALDEALNLFKCMPERDQCSWNAMVSGFAQRDRFEEA 135

Query: 170 LKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDA 229
           L+F   +       NE+SF   L+ C  L +L +  Q+HG +  + +  +V + S++VD 
Sbjct: 136 LRFVVDMHSEDFVLNEYSFGSALSACAGLMDLSIGVQIHGLIAKSRYSLDVYMGSALVDM 195

Query: 230 YAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLI 289
           Y+KC  ++ A+R FD+ D R++++W                                +LI
Sbjct: 196 YSKCRVVASAQRAFDDMDVRNIVSW-------------------------------NSLI 224

Query: 290 AGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTN-F 348
             Y +NG   KALE+F RMM   I P++ T +S   ACAS+ +++ G Q+H  +++ + +
Sbjct: 225 TCYEQNGPAGKALEVFVRMMNCGIEPDEITLASVASACASLSAIREGLQIHARVMKHDKY 284

Query: 349 RSNTIVMSSLIDMYSKCGCLNDGRQVFD---LTD-NKENSML------------------ 386
           R++ ++ ++L+DMY+KC  +N+ R VFD   L D   E SM+                  
Sbjct: 285 RNDLVLGNALVDMYAKCRRVNEARLVFDRMPLRDVVSETSMVSGYAKASSVKAARLMFSN 344

Query: 387 --------WNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNAC--------- 429
                   WN +I+  TQ+G +E+A+RLF  + R S+ P   T   +LNAC         
Sbjct: 345 MMERNVVSWNALIAGYTQNGENEEAVRLFLLLKRESIWPTHYTFGNLLNACANLADLKLG 404

Query: 430 --THSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDS 487
              H+ +++ G  +F+S       + N      LI++  + G  +      E+M  E D+
Sbjct: 405 RQAHTHILKHGF-WFKSGEDSDIFVGNS-----LIDMYMKCGLVEDGRLVFERM-LERDN 457

Query: 488 YLWNAL 493
             WNA+
Sbjct: 458 VSWNAM 463



 Score =  191 bits (486), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 116/397 (29%), Positives = 194/397 (48%), Gaps = 58/397 (14%)

Query: 21  IQSFLSLIS----KGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHL 76
           I S+ SLI+     G   +A+     +   GI     TLA +   CA   +++ G ++H 
Sbjct: 217 IVSWNSLITCYEQNGPAGKALEVFVRMMNCGIEPDEITLASVASACASLSAIREGLQIHA 276

Query: 77  HLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMK 136
            +    +      L N L+ MY KC    +AR VFD++P++++ S  +M+SGYA    +K
Sbjct: 277 RVMKHDKYRNDLVLGNALVDMYAKCRRVNEARLVFDRMPLRDVVSETSMVSGYAKASSVK 336

Query: 137 HARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICV 196
            AR +F NM ER+VVSWN +I GY ++G  EE ++ + +L+R SI    ++F  +L  C 
Sbjct: 337 AARLMFSNMMERNVVSWNALIAGYTQNGENEEAVRLFLLLKRESIWPTHYTFGNLLNACA 396

Query: 197 KLEELKLTRQVHGQVLVTGFL------SNVVISSSIVDAYAKCGELSDARRLFDETDARD 250
            L +LKL RQ H  +L  GF       S++ + +S++D Y KCG + D R +F+    RD
Sbjct: 397 NLADLKLGRQAHTHILKHGFWFKSGEDSDIFVGNSLIDMYMKCGLVEDGRLVFERMLERD 456

Query: 251 VLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMI 310
            ++W  M+ GYA+                               NG G +ALE+F  M++
Sbjct: 457 NVSWNAMIVGYAQ-------------------------------NGYGTEALEIFREMLV 485

Query: 311 LRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIV---------MSSLIDM 361
              RP+  T    L AC+    ++ G        R  F+S TI           + ++D+
Sbjct: 486 SGERPDHVTMIGVLSACSHAGLVEEG--------RCYFQSMTIEHGLVPVKDHYTCMVDL 537

Query: 362 YSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHG 398
             + GCL++   +      + ++++W ++++A   HG
Sbjct: 538 LGRAGCLDEANNLIQTMPMEPDAVVWGSLLAACKVHG 574



 Score = 76.6 bits (187), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 71/293 (24%), Positives = 115/293 (39%), Gaps = 70/293 (23%)

Query: 10  INRKNLPNNCLIQSFLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLK 69
           + R  +  N LI  +      G+  EA+    LL +  I     T   +L  CA    LK
Sbjct: 346 MERNVVSWNALIAGY---TQNGENEEAVRLFLLLKRESIWPTHYTFGNLLNACANLADLK 402

Query: 70  LGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGY 129
           LG++ H H+              H    +FK G D D            +F  N+++  Y
Sbjct: 403 LGRQAHTHIL------------KH--GFWFKSGEDSD------------IFVGNSLIDMY 436

Query: 130 ANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFA 189
              G+++  R +F+ M ERD VSWN MI+GYA++G   E L+ ++               
Sbjct: 437 MKCGLVEDGRLVFERMLERDNVSWNAMIVGYAQNGYGTEALEIFR--------------- 481

Query: 190 GILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDAR 249
                               ++LV+G   + V    ++ A +  G + + R  F      
Sbjct: 482 --------------------EMLVSGERPDHVTMIGVLSACSHAGLVEEGRCYFQSMTIE 521

Query: 250 DVLT-----WTTMVSGYAKLGDMESASKLFNEMP-EKNPVSWTTLIAGYTRNG 296
             L      +T MV    + G ++ A+ L   MP E + V W +L+A    +G
Sbjct: 522 HGLVPVKDHYTCMVDLLGRAGCLDEANNLIQTMPMEPDAVVWGSLLAACKVHG 574


>gi|297723179|ref|NP_001173953.1| Os04g0436350 [Oryza sativa Japonica Group]
 gi|21740490|emb|CAD40814.1| OSJNBa0006B20.5 [Oryza sativa Japonica Group]
 gi|125590470|gb|EAZ30820.1| hypothetical protein OsJ_14890 [Oryza sativa Japonica Group]
 gi|218194889|gb|EEC77316.1| hypothetical protein OsI_15981 [Oryza sativa Indica Group]
 gi|255675491|dbj|BAH92681.1| Os04g0436350 [Oryza sativa Japonica Group]
          Length = 685

 Score =  364 bits (935), Expect = 7e-98,   Method: Compositional matrix adjust.
 Identities = 202/597 (33%), Positives = 333/597 (55%), Gaps = 43/597 (7%)

Query: 16  PNNCLIQSFLSLISK-GQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRV 74
           P+ C   + ++ +++ G+  +A+  L  +      L A + A  L  CA  K+ + G++V
Sbjct: 110 PDQCSYNAVVAALAQHGRGGDALRFLAAMHADDFVLNAYSFASALSACASEKASRTGEQV 169

Query: 75  HLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGM 134
           H  L          ++   L+ MY KC    +A+KVFD                      
Sbjct: 170 HA-LVTKSSHGSDVYIGTALVDMYAKCERPEEAQKVFDA--------------------- 207

Query: 135 MKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTI 194
                     M ER++VSWN++I  Y ++G V+E L  +  + +     +E + A +++ 
Sbjct: 208 ----------MPERNIVSWNSLITCYEQNGPVDEALALFVRMMKDGFVPDEVTLASVMSA 257

Query: 195 CVKLEELKLTRQVHGQVLVTG-FLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLT 253
           C  L   +  RQVH +++ +  F  ++V+++++VD YAKCG   +A+ +FD    R V++
Sbjct: 258 CAGLAAGREGRQVHTRMVKSDRFREDMVLNNALVDMYAKCGRTWEAKCVFDRMAIRSVVS 317

Query: 254 WTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRI 313
            T+M++GYAK  ++  A  +F +M EKN V+W  LIA Y  N   ++AL LF R+    +
Sbjct: 318 ETSMITGYAKSANVGDAQAVFLQMVEKNVVAWNVLIATYAHNSEEEEALRLFVRLKRESV 377

Query: 314 RPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFR------SNTIVMSSLIDMYSKCGC 367
            P  +T+ + L ACA++ +L+ G+Q H  +++  FR      S+  V +SL+DMY K G 
Sbjct: 378 WPTHYTYGNVLNACANLANLQLGQQAHVHVLKEGFRFDSGPESDVFVGNSLVDMYLKTGS 437

Query: 368 LNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILN 427
           ++DG +VF+    ++N + WN MI    Q+G  + A+ LF  M+ S+ +PD +T+  +L+
Sbjct: 438 ISDGAKVFERMAARDN-VSWNAMIVGYAQNGRAKDALLLFERMLCSNERPDSVTMIGVLS 496

Query: 428 ACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDS 487
           AC HSGLV+EG  YF+SMT D GIIP ++H+ C+I+LL +AG   ++   +E MP E D+
Sbjct: 497 ACGHSGLVKEGRRYFQSMTEDHGIIPTRDHYTCMIDLLGRAGHLKEVEELIENMPMEPDA 556

Query: 488 YLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLI 547
            LW +L G CR+H NIDMG     +L + +P +S  + LLS++Y+ LGK   V +VR+ +
Sbjct: 557 VLWASLLGACRLHKNIDMGEWAAGKLFELDPDNSGPYVLLSNMYAELGKWADVFRVRRSM 616

Query: 548 NERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQMGEDAPSLDAD 604
             R   K+   SWIEI  KV+ F   D++HP R+ ++  L  +  QM     S+DA+
Sbjct: 617 KHRGVSKQPGCSWIEIGRKVNVFLARDNIHPCRNEIHDTLRIIQMQMSR--MSIDAE 671



 Score =  189 bits (479), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 140/508 (27%), Positives = 231/508 (45%), Gaps = 98/508 (19%)

Query: 88  TFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAE 147
           TFL N L+S Y + GS  DAR+VFD +P +N FSYN +LS  A LG    A  LF  + +
Sbjct: 50  TFLLNTLLSAYARLGSLHDARRVFDGMPHRNTFSYNALLSACARLGRADDALALFGAIPD 109

Query: 148 RDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQV 207
            D  S+N ++   A+ G   + L+F   +       N +SFA  L+ C   +  +   QV
Sbjct: 110 PDQCSYNAVVAALAQHGRGGDALRFLAAMHADDFVLNAYSFASALSACASEKASRTGEQV 169

Query: 208 HGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDM 267
           H  V  +   S+V I +++VD YAKC    +A+++FD    R++++W ++++ Y +    
Sbjct: 170 HALVTKSSHGSDVYIGTALVDMYAKCERPEEAQKVFDAMPERNIVSWNSLITCYEQ---- 225

Query: 268 ESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCAC 327
                                      NG   +AL LF RMM     P++ T +S + AC
Sbjct: 226 ---------------------------NGPVDEALALFVRMMKDGFVPDEVTLASVMSAC 258

Query: 328 ASIVSLKHGKQVHGFLIRTN-FRSNTIVMSSLIDMYSKCGCLNDGRQVFD---------- 376
           A + + + G+QVH  +++++ FR + ++ ++L+DMY+KCG   + + VFD          
Sbjct: 259 AGLAAGREGRQVHTRMVKSDRFREDMVLNNALVDMYAKCGRTWEAKCVFDRMAIRSVVSE 318

Query: 377 --------------------LTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVK 416
                               L   ++N + WN +I+    +  +E+A+RLF  + R SV 
Sbjct: 319 TSMITGYAKSANVGDAQAVFLQMVEKNVVAWNVLIATYAHNSEEEEALRLFVRLKRESVW 378

Query: 417 PDKITLAVILNAC-----------THSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELL 465
           P   T   +LNAC            H  +++EG  +      D+  + N      L+++ 
Sbjct: 379 PTHYTYGNVLNACANLANLQLGQQAHVHVLKEGFRFDSGPESDV-FVGNS-----LVDMY 432

Query: 466 AQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLI--------DQN 517
            + G         E+M    D+  WNA+     I G    GR   D L+        ++ 
Sbjct: 433 LKTGSISDGAKVFERMA-ARDNVSWNAM-----IVGYAQNGR-AKDALLLFERMLCSNER 485

Query: 518 PQSSATHGLLSSIYSALGKGRLVEKVRQ 545
           P S    G+L    SA G   LV++ R+
Sbjct: 486 PDSVTMIGVL----SACGHSGLVKEGRR 509



 Score =  139 bits (349), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 69/223 (30%), Positives = 127/223 (56%), Gaps = 1/223 (0%)

Query: 216 FLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFN 275
           F     + ++++ AYA+ G L DARR+FD    R+  ++  ++S  A+LG  + A  LF 
Sbjct: 46  FAGETFLLNTLLSAYARLGSLHDARRVFDGMPHRNTFSYNALLSACARLGRADDALALFG 105

Query: 276 EMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKH 335
            +P+ +  S+  ++A   ++G G  AL     M       N ++F+S L ACAS  + + 
Sbjct: 106 AIPDPDQCSYNAVVAALAQHGRGGDALRFLAAMHADDFVLNAYSFASALSACASEKASRT 165

Query: 336 GKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALT 395
           G+QVH  + +++  S+  + ++L+DMY+KC    + ++VFD    + N + WN++I+   
Sbjct: 166 GEQVHALVTKSSHGSDVYIGTALVDMYAKCERPEEAQKVFDAMPER-NIVSWNSLITCYE 224

Query: 396 QHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEG 438
           Q+G  ++A+ LF  M++    PD++TLA +++AC      +EG
Sbjct: 225 QNGPVDEALALFVRMMKDGFVPDEVTLASVMSACAGLAAGREG 267



 Score = 48.5 bits (114), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 40/174 (22%), Positives = 81/174 (46%), Gaps = 11/174 (6%)

Query: 348 FRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLF 407
           F   T ++++L+  Y++ G L+D R+VFD   ++ N+  +N ++SA  + G  + A+ LF
Sbjct: 46  FAGETFLLNTLLSAYARLGSLHDARRVFDGMPHR-NTFSYNALLSACARLGRADDALALF 104

Query: 408 HDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEH----HACLIE 463
             +      PD+ +   ++ A    G   + L +  +M  D  ++          AC  E
Sbjct: 105 GAI----PDPDQCSYNAVVAALAQHGRGGDALRFLAAMHADDFVLNAYSFASALSACASE 160

Query: 464 LLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQN 517
             ++ G  +Q+   + K  +  D Y+  AL  +       +  +KV D + ++N
Sbjct: 161 KASRTG--EQVHALVTKSSHGSDVYIGTALVDMYAKCERPEEAQKVFDAMPERN 212


>gi|356533814|ref|XP_003535453.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Glycine max]
          Length = 782

 Score =  363 bits (933), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 183/518 (35%), Positives = 305/518 (58%), Gaps = 16/518 (3%)

Query: 92  NHLISMYFKCGSD---------VDARKVFDKIPV--KNLFSYNNMLSGYANLGMMKHARN 140
           N L+S Y  C S            ARK+FD+ P   ++  ++  +++GY     +  AR 
Sbjct: 170 NALMSCYVSCASSPLVNSCVLMAAARKLFDEAPPGRRDEPAWTTIIAGYVRNDDLVAARE 229

Query: 141 LFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEE 200
           L + M +   V+WN MI GY   G  EE     + +    I  +E+++  +++       
Sbjct: 230 LLEGMTDHIAVAWNAMISGYVHRGFYEEAFDLLRRMHSLGIQLDEYTYTSVISAASNAGL 289

Query: 201 LKLTRQVHGQVLVTGFLSN----VVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTT 256
             + RQVH  VL T    +    + ++++++  Y +CG+L +ARR+FD+   +D+++W  
Sbjct: 290 FNIGRQVHAYVLRTVVQPSGHFVLSVNNALITLYTRCGKLVEARRVFDKMPVKDLVSWNA 349

Query: 257 MVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPN 316
           ++SG      +E A+ +F EMP ++ ++WT +I+G  +NG G++ L+LF +M +  + P 
Sbjct: 350 ILSGCVNARRIEEANSIFREMPVRSLLTWTVMISGLAQNGFGEEGLKLFNQMKLEGLEPC 409

Query: 317 QHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFD 376
            + ++  + +C+ + SL +G+Q+H  +I+    S+  V ++LI MYS+CG +     VF 
Sbjct: 410 DYAYAGAIASCSVLGSLDNGQQLHSQIIQLGHDSSLSVGNALITMYSRCGLVEAADTVF- 468

Query: 377 LTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQ 436
           LT    +S+ WN MI+AL QHG+  QAI+L+  M++  + PD+IT   IL+AC+H+GLV+
Sbjct: 469 LTMPYVDSVSWNAMIAALAQHGHGVQAIQLYEKMLKEDILPDRITFLTILSACSHAGLVK 528

Query: 437 EGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGV 496
           EG  YF++M    GI P ++H++ LI+LL +AG   +  N  E MP+E  + +W AL   
Sbjct: 529 EGRHYFDTMRVCYGITPEEDHYSRLIDLLCRAGMFSEAKNVTESMPFEPGAPIWEALLAG 588

Query: 497 CRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQ 556
           C IHGN+++G +  D+L++  PQ   T+  LS++Y+ALG+   V +VR+L+ ER  KKE 
Sbjct: 589 CWIHGNMELGIQAADRLLELMPQQDGTYISLSNMYAALGQWDEVARVRKLMRERGVKKEP 648

Query: 557 AISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQM 594
             SWIE+EN VH F V D++HP    +Y  LEQL  +M
Sbjct: 649 GCSWIEVENMVHVFLVDDAVHPEVHAVYRYLEQLVHEM 686



 Score =  189 bits (479), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 137/503 (27%), Positives = 240/503 (47%), Gaps = 51/503 (10%)

Query: 63  AESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSY 122
           A+       + VH H+ LT    P   + N LI  Y K  +   AR +FDKIP  ++ + 
Sbjct: 7   AQLSHTSFARAVHAHI-LTSGFKPFPLIINRLIDHYCKSFNIPYARYLFDKIPKPDIVAA 65

Query: 123 NNMLSGYANLGMMKHARNLFD--NMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFS 180
             MLS Y+  G +K A  LF+   M+ RD VS+N MI  ++ S      L+ +  ++R  
Sbjct: 66  TTMLSAYSAAGNIKLAHQLFNATPMSIRDTVSYNAMITAFSHSHDGHAALQLFVQMKRLG 125

Query: 181 ISCNEFSFAGIL-TICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGE---- 235
              + F+F+ +L  + +  +E    +Q+H +V   G LS   + ++++  Y  C      
Sbjct: 126 FVPDPFTFSSVLGALSLIADEETHCQQLHCEVFKWGALSVPSVLNALMSCYVSCASSPLV 185

Query: 236 -----LSDARRLFDETDA--RDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTL 288
                ++ AR+LFDE     RD   WTT+++GY +  D+ +A +L   M +   V+W  +
Sbjct: 186 NSCVLMAAARKLFDEAPPGRRDEPAWTTIIAGYVRNDDLVAARELLEGMTDHIAVAWNAM 245

Query: 289 IAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNF 348
           I+GY   G  ++A +L  RM  L I+ +++T++S + A ++      G+QVH +++RT  
Sbjct: 246 ISGYVHRGFYEEAFDLLRRMHSLGIQLDEYTYTSVISAASNAGLFNIGRQVHAYVLRTVV 305

Query: 349 R-SNTIVMS---SLIDMYSKCGCLNDGRQVFDLTDNKE----NSML-------------- 386
           + S   V+S   +LI +Y++CG L + R+VFD    K+    N++L              
Sbjct: 306 QPSGHFVLSVNNALITLYTRCGKLVEARRVFDKMPVKDLVSWNAILSGCVNARRIEEANS 365

Query: 387 ------------WNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGL 434
                       W  MIS L Q+G+ E+ ++LF+ M    ++P     A  + +C+  G 
Sbjct: 366 IFREMPVRSLLTWTVMISGLAQNGFGEEGLKLFNQMKLEGLEPCDYAYAGAIASCSVLGS 425

Query: 435 VQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALH 494
           +  G     S    LG   +      LI + ++ G  +        MPY  DS  WNA+ 
Sbjct: 426 LDNG-QQLHSQIIQLGHDSSLSVGNALITMYSRCGLVEAADTVFLTMPYV-DSVSWNAMI 483

Query: 495 GVCRIHGNIDMGRKVVDQLIDQN 517
                HG+     ++ ++++ ++
Sbjct: 484 AALAQHGHGVQAIQLYEKMLKED 506



 Score =  153 bits (386), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 98/392 (25%), Positives = 189/392 (48%), Gaps = 38/392 (9%)

Query: 18  NCLIQSFLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLH 77
           N +I  +   + +G   EA   L  +   GI+L   T   ++   + +    +G++VH +
Sbjct: 243 NAMISGY---VHRGFYEEAFDLLRRMHSLGIQLDEYTYTSVISAASNAGLFNIGRQVHAY 299

Query: 78  LKLTQRKTPTTFL---SNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGM 134
           +  T  +    F+   +N LI++Y +CG  V+AR+VFDK+PVK+L S+N +LSG  N   
Sbjct: 300 VLRTVVQPSGHFVLSVNNALITLYTRCGKLVEARRVFDKMPVKDLVSWNAILSGCVNARR 359

Query: 135 MKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTI 194
           ++ A ++F  M  R +++W  MI G A++G  EEGLK +  ++   +   ++++AG +  
Sbjct: 360 IEEANSIFREMPVRSLLTWTVMISGLAQNGFGEEGLKLFNQMKLEGLEPCDYAYAGAIAS 419

Query: 195 CVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTW 254
           C  L  L   +Q+H Q++  G  S++ + ++++  Y++CG +  A  +F      D ++W
Sbjct: 420 CSVLGSLDNGQQLHSQIIQLGHDSSLSVGNALITMYSRCGLVEAADTVFLTMPYVDSVSW 479

Query: 255 TTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIR 314
             M                               IA   ++G G +A++L+ +M+   I 
Sbjct: 480 NAM-------------------------------IAALAQHGHGVQAIQLYEKMLKEDIL 508

Query: 315 PNQHTFSSCLCACASIVSLKHGKQVHGFL-IRTNFRSNTIVMSSLIDMYSKCGCLNDGRQ 373
           P++ TF + L AC+    +K G+     + +           S LID+  + G  ++ + 
Sbjct: 509 PDRITFLTILSACSHAGLVKEGRHYFDTMRVCYGITPEEDHYSRLIDLLCRAGMFSEAKN 568

Query: 374 VFDLTDNKENSMLWNTMISALTQHGYDEQAIR 405
           V +    +  + +W  +++    HG  E  I+
Sbjct: 569 VTESMPFEPGAPIWEALLAGCWIHGNMELGIQ 600


>gi|297739912|emb|CBI30094.3| unnamed protein product [Vitis vinifera]
          Length = 614

 Score =  363 bits (932), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 189/530 (35%), Positives = 311/530 (58%), Gaps = 18/530 (3%)

Query: 69  KLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPV-KNLFSYNNMLS 127
           K G+ +       + + P       +IS Y KCG   +AR++FD++   KN+ ++  M+ 
Sbjct: 79  KDGRIMEARRLFDEMREPDVITWTTVISGYIKCGMIEEARRLFDRVDAKKNVVTWTAMVG 138

Query: 128 GYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLK-FYKVLRRFSISCNEF 186
           GY     +  A  LF+ M  ++VVSWNTMI GYA++G ++  +  F K+  R  +S N  
Sbjct: 139 GYIRSNKISDAEKLFNEMPNKNVVSWNTMIDGYAQNGRIDSAMYLFEKMPERNVVSWN-- 196

Query: 187 SFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDET 246
           +   +L  C ++EE         + L        VIS + + A    G L +A  LF+  
Sbjct: 197 TVMSMLAQCGRIEE--------ARRLFDRMPERDVISWTAMIA----GLLDEALDLFERM 244

Query: 247 DARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFT 306
             RD+ +W TM++G  + GD+  A KLFNEMP+KN +SWTT+I G  + G  ++AL++F+
Sbjct: 245 PERDLPSWNTMITGLIQNGDLRRARKLFNEMPKKNVISWTTMITGCVQEGESEEALKIFS 304

Query: 307 RMMILR-IRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKC 365
           RM+     +PNQ TF S L AC+++  L  G+QVH  + +T ++ +T V+S+LI+MYSKC
Sbjct: 305 RMLSTNGAKPNQGTFVSVLGACSNLAGLGEGQQVHQIISKTVYQDSTFVVSALINMYSKC 364

Query: 366 GCLNDGRQVFDLTDNKENSML-WNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAV 424
           G L   R++FD     +  ++ WN +I+A   HGY ++AI  F +M +S  KPD +T   
Sbjct: 365 GELGTARKMFDDGMTSQRDLVSWNGIIAAYAHHGYGKEAINFFKEMRKSGFKPDDVTYVG 424

Query: 425 ILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYE 484
           +L+AC+H+GLV+EGL YF+ +  D  I+  ++H+ACL++L  +AG   +    +E++  +
Sbjct: 425 LLSACSHAGLVEEGLKYFDELVKDRSILVREDHYACLVDLCGRAGRLKEAFGFIERLETK 484

Query: 485 HDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVR 544
             + +W AL   C +H N+ +G++   +L++  P+++ T+ LLS+IY++ GK R   +VR
Sbjct: 485 PSARVWGALLAGCNVHANVKIGKQAAKKLLEVEPENAGTYLLLSNIYASTGKWREAARVR 544

Query: 545 QLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQM 594
             + ++  KK+   SWIE+ N+VH F V D  H    ++YS+L  L  +M
Sbjct: 545 LKMKDKGLKKQPGCSWIEVGNRVHVFVVGDKSHSQSKLIYSLLRDLHSKM 594



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 98/357 (27%), Positives = 160/357 (44%), Gaps = 58/357 (16%)

Query: 219 NVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMES--------- 269
           NV   + ++   +K G + +ARRLFDE    DV+TWTT++SGY K G +E          
Sbjct: 66  NVARCNWMITNLSKDGRIMEARRLFDEMREPDVITWTTVISGYIKCGMIEEARRLFDRVD 125

Query: 270 -----------------------ASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFT 306
                                  A KLFNEMP KN VSW T+I GY +NG    A+ LF 
Sbjct: 126 AKKNVVTWTAMVGGYIRSNKISDAEKLFNEMPNKNVVSWNTMIDGYAQNGRIDSAMYLFE 185

Query: 307 RMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCG 366
           +M    +  + +T  S L  C  I   +  +++   +   +  S T +++ L+D      
Sbjct: 186 KMPERNV-VSWNTVMSMLAQCGRI---EEARRLFDRMPERDVISWTAMIAGLLD------ 235

Query: 367 CLNDGRQVFDLTDNKENSML--WNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAV 424
                 +  DL +      L  WNTMI+ L Q+G   +A +LF++M + +V    I+   
Sbjct: 236 ------EALDLFERMPERDLPSWNTMITGLIQNGDLRRARKLFNEMPKKNV----ISWTT 285

Query: 425 ILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIEL---LAQAGCSDQLMNQLEKM 481
           ++  C   G  +E L  F  M    G  PNQ     ++     LA  G   Q+   + K 
Sbjct: 286 MITGCVQEGESEEALKIFSRMLSTNGAKPNQGTFVSVLGACSNLAGLGEGQQVHQIISKT 345

Query: 482 PYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGR 538
            Y+  +++ +AL  +    G +   RK+ D  +       + +G++++ Y+  G G+
Sbjct: 346 VYQDSTFVVSALINMYSKCGELGTARKMFDDGMTSQRDLVSWNGIIAA-YAHHGYGK 401



 Score = 75.5 bits (184), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 69/266 (25%), Positives = 133/266 (50%), Gaps = 19/266 (7%)

Query: 28  ISKGQLSEAISSLD-LLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTP 86
           + +G+  EA+     +L+  G +    T   +L  C+    L  G++VH  +  T  +  
Sbjct: 291 VQEGESEEALKIFSRMLSTNGAKPNQGTFVSVLGACSNLAGLGEGQQVHQIISKTVYQD- 349

Query: 87  TTFLSNHLISMYFKCGSDVDARKVFDK--IPVKNLFSYNNMLSGYANLGMMKHARNLFDN 144
           +TF+ + LI+MY KCG    ARK+FD      ++L S+N +++ YA+ G  K A N F  
Sbjct: 350 STFVVSALINMYSKCGELGTARKMFDDGMTSQRDLVSWNGIIAAYAHHGYGKEAINFFKE 409

Query: 145 MAER----DVVSWNTMIIGYAKSGAVEEGLKFY-KVLRRFSISCNEFSFAGILTICVKLE 199
           M +     D V++  ++   + +G VEEGLK++ ++++  SI   E  +A ++ +C +  
Sbjct: 410 MRKSGFKPDDVTYVGLLSACSHAGLVEEGLKYFDELVKDRSILVREDHYACLVDLCGRAG 469

Query: 200 ELKLTRQVHG-----QVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTW 254
            LK   +  G     +   +  +   +++   V A  K G+ + A++L  E +  +  T+
Sbjct: 470 RLK---EAFGFIERLETKPSARVWGALLAGCNVHANVKIGKQA-AKKLL-EVEPENAGTY 524

Query: 255 TTMVSGYAKLGDMESASKLFNEMPEK 280
             + + YA  G    A+++  +M +K
Sbjct: 525 LLLSNIYASTGKWREAARVRLKMKDK 550


>gi|148906747|gb|ABR16520.1| unknown [Picea sitchensis]
          Length = 644

 Score =  362 bits (930), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 190/540 (35%), Positives = 309/540 (57%), Gaps = 46/540 (8%)

Query: 35  EAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPT-TFLSNH 93
           EA+     +   GI+    T A IL  C + + L        H ++ +    +  F+ N 
Sbjct: 149 EALGFFYEMQDVGIQPNHFTFASILPACTDLEVLG-----EFHDEIVKGGFESNVFVGNG 203

Query: 94  LISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSW 153
           L+ MY K G    AR++FDK+P +++ S+N M++GY   G+++ A  LF  + +RDV++W
Sbjct: 204 LVDMYAKRGCIEFARELFDKMPQRDVVSWNAMIAGYVQNGLIEDALKLFQEIPKRDVITW 263

Query: 154 NTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLV 213
           NTM+ GYA+ G VE  ++ ++                           K+  Q       
Sbjct: 264 NTMMAGYAQCGDVENAVELFE---------------------------KMPEQ------- 289

Query: 214 TGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKL 273
                N+V  ++++  Y + G + +A +LF     R+V++W  ++SG+A+ G +E A KL
Sbjct: 290 -----NLVSWNTMIAGYVQNGSVKEAFKLFQIMPERNVISWNAVISGFAQNGQVEEALKL 344

Query: 274 FNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSL 333
           F  MPE N VSW  +IAGY++NG  + AL+LF +M ++ ++PN  TF+  L ACA++  L
Sbjct: 345 FKTMPECNVVSWNAMIAGYSQNGQAENALKLFGQMQMVDMKPNTETFAIVLPACAALAVL 404

Query: 334 KHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISA 393
           + G + H  +IR+ F+S+ +V ++L+ MY+KCG + D R+VFD    ++++ L + MI  
Sbjct: 405 EQGNEAHEVVIRSGFQSDVLVGNTLVGMYAKCGSIEDARKVFDRMRQQDSASL-SAMIVG 463

Query: 394 LTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIP 453
              +G  ++++ LF  M  + +KPD++T   +L+AC H+GLV EG  YF+ MT    I P
Sbjct: 464 YAINGCSKESLELFEQMQFTGLKPDRVTFVGVLSACCHAGLVDEGRQYFDIMTRFYHITP 523

Query: 454 NQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQL 513
             EH+ C+I+LL +AGC D+  + + KMP + D+ +W +L   CR H NID+G KV   L
Sbjct: 524 AMEHYGCMIDLLGRAGCFDEANDLINKMPIKPDADMWGSLLSACRTHNNIDLGEKVAQHL 583

Query: 514 IDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVS 573
           I  NPQ+ A + LLS+IY+A G+   +  VR  + +R+ KK+   SWI I+ +VHAF V 
Sbjct: 584 IALNPQNPAPYVLLSNIYAAAGRWDDIGSVRNRMKDRKVKKKLGCSWIVIKKQVHAFLVG 643



 Score =  213 bits (542), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 148/496 (29%), Positives = 242/496 (48%), Gaps = 78/496 (15%)

Query: 26  SLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKT 85
           SL  +G+L EA+  L  + + GI   + T   +LQ C  +KSL   K +H H+  TQ + 
Sbjct: 38  SLCKQGRLREALHILQDMVENGIWPHSSTYDSLLQGCLNAKSLPDAKLLHAHMIQTQFEC 97

Query: 86  PTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNM 145
               L N L+S+Y K GS V+                               AR +FD M
Sbjct: 98  QDISLGNKLVSIYVKLGSLVE-------------------------------ARRVFDEM 126

Query: 146 AERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTR 205
             ++VVSW  MI  YA+    +E L F+  ++   I  N F+FA IL  C  LE L    
Sbjct: 127 PVKNVVSWTAMIAAYARHEHGQEALGFFYEMQDVGIQPNHFTFASILPACTDLEVLG--- 183

Query: 206 QVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLG 265
           + H +++  GF SNV + + +VD YAK G +  AR LFD+   RDV++W  M++GY + G
Sbjct: 184 EFHDEIVKGGFESNVFVGNGLVDMYAKRGCIEFARELFDKMPQRDVVSWNAMIAGYVQNG 243

Query: 266 DMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLC 325
            +E A KLF E+P+++ ++W T++AGY + G  + A+ELF +M      P Q+  S    
Sbjct: 244 LIEDALKLFQEIPKRDVITWNTMMAGYAQCGDVENAVELFEKM------PEQNLVSWNTM 297

Query: 326 ACASIVSLKHGKQVHGF-LIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENS 384
               +   ++G     F L +     N I  +++I  +++ G + +  ++F  T  + N 
Sbjct: 298 IAGYV---QNGSVKEAFKLFQIMPERNVISWNAVISGFAQNGQVEEALKLFK-TMPECNV 353

Query: 385 MLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFES 444
           + WN MI+  +Q+G  E A++LF  M    +KP+  T A++L AC    ++++G      
Sbjct: 354 VSWNAMIAGYSQNGQAENALKLFGQMQMVDMKPNTETFAIVLPACAALAVLEQG------ 407

Query: 445 MTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNID 504
                    N+ H     E++ ++G             ++ D  + N L G+    G+I+
Sbjct: 408 ---------NEAH-----EVVIRSG-------------FQSDVLVGNTLVGMYAKCGSIE 440

Query: 505 MGRKVVDQLIDQNPQS 520
             RKV D++  Q+  S
Sbjct: 441 DARKVFDRMRQQDSAS 456



 Score = 72.4 bits (176), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 50/175 (28%), Positives = 86/175 (49%), Gaps = 10/175 (5%)

Query: 13  KNLPNNCLIQSFLSLIS----KGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSL 68
           K +P  C + S+ ++I+     GQ   A+     +    ++   ET A +L  CA    L
Sbjct: 346 KTMPE-CNVVSWNAMIAGYSQNGQAENALKLFGQMQMVDMKPNTETFAIVLPACAALAVL 404

Query: 69  KLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSG 128
           + G   H  + +         + N L+ MY KCGS  DARKVFD++  ++  S + M+ G
Sbjct: 405 EQGNEAH-EVVIRSGFQSDVLVGNTLVGMYAKCGSIEDARKVFDRMRQQDSASLSAMIVG 463

Query: 129 YANLGMMKHARNLFDNMA----ERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRF 179
           YA  G  K +  LF+ M     + D V++  ++     +G V+EG +++ ++ RF
Sbjct: 464 YAINGCSKESLELFEQMQFTGLKPDRVTFVGVLSACCHAGLVDEGRQYFDIMTRF 518


>gi|168023826|ref|XP_001764438.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|54695178|dbj|BAD67154.1| PpPPR_91 [Physcomitrella patens]
 gi|162684302|gb|EDQ70705.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 868

 Score =  362 bits (929), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 186/572 (32%), Positives = 320/572 (55%), Gaps = 30/572 (5%)

Query: 32  QLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFL- 90
           +L+EA    + + Q GI   A T   +L  C   ++L  G+R+H H+  ++R   T  + 
Sbjct: 238 KLNEAFELYEQMLQAGISPNAVTFVSLLNSCNTPEALNRGRRIHSHI--SERGLETDMIV 295

Query: 91  SNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDV 150
           +N LI+MY KC S  +AR++FD++  +++ S++ M++GYA                    
Sbjct: 296 ANALITMYCKCNSVQEAREIFDRMSKRDVISWSAMIAGYAQS------------------ 337

Query: 151 VSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQ 210
                   GY    +++E  +  + +RR  +  N+ +F  IL  C     L+  RQ+H +
Sbjct: 338 --------GYKDKESIDEVFQLLERMRREGVFPNKVTFMSILRACTAHGALEQGRQIHAE 389

Query: 211 VLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESA 270
           +   GF  +  + ++I + YAKCG + +A ++F +   ++V+ WT+ +S Y K GD+ SA
Sbjct: 390 LSKVGFELDRSLQTAIFNMYAKCGSIYEAEQVFSKMANKNVVAWTSFLSMYIKCGDLSSA 449

Query: 271 SKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASI 330
            K+F+EMP +N VSW  +IAGY +NG   K  EL + M     +P++ T  + L AC ++
Sbjct: 450 EKVFSEMPTRNVVSWNLMIAGYAQNGDIVKVFELLSSMKAEGFQPDRVTVITILEACGAL 509

Query: 331 VSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTM 390
             L+ GK VH   ++    S+T+V +SLI MYSKCG + + R VFD   N+ +++ WN M
Sbjct: 510 AGLERGKLVHAEAVKLGLESDTVVATSLIGMYSKCGQVAEARTVFDKMSNR-DTVAWNAM 568

Query: 391 ISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLG 450
           ++   QHG   +A+ LF  M++  V P++ITL  +++AC+ +GLVQEG   F  M  D  
Sbjct: 569 LAGYGQHGDGLEAVDLFKRMLKERVSPNEITLTAVISACSRAGLVQEGREIFRMMQEDFK 628

Query: 451 IIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVV 510
           + P ++H+ C+++LL +AG   +    ++ MP E D  +W+AL G C+ H N+ +  +  
Sbjct: 629 MTPRKQHYGCMVDLLGRAGRLQEAEEFIQSMPCEPDISVWHALLGACKSHNNVQLAERAA 688

Query: 511 DQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAF 570
             +++  P  ++ +  LS+IY+  G+     KVR+++++R  KK++  S IEI+ ++H F
Sbjct: 689 HHILELEPSYASVYITLSNIYAQAGRWDDSTKVRRVMDDRGLKKDRGESSIEIDGRIHTF 748

Query: 571 SVSDSLHPMRDVLYSVLEQLAGQMGEDAPSLD 602
              D  HP  D +++ LE L  +M E   + D
Sbjct: 749 VAEDCAHPEIDAIHAELETLTKEMKEAGYTPD 780



 Score =  176 bits (445), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 142/632 (22%), Positives = 264/632 (41%), Gaps = 145/632 (22%)

Query: 27  LISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTP 86
           L   G+L EAI  L ++ QRG+ + + T   +++ CA+++  + GK VH  L     +  
Sbjct: 31  LCKAGRLREAIQLLGIIKQRGLLVNSNTYGCVIEHCAKARRFEDGKMVHKQLDELGVEID 90

Query: 87  TTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMA 146
             +L N LI+ Y K      A +VF ++ ++++ ++++M++ YA       A + F+ M 
Sbjct: 91  -IYLGNSLINFYSKFEDVASAEQVFRRMTLRDVVTWSSMIAAYAGNNHPAKAFDTFERMT 149

Query: 147 ---------------------------------------ERDVVSWNTMIIGYAKSGAVE 167
                                                  E DV     +I  Y+K G + 
Sbjct: 150 DANIEPNRITFLSILKACNNYSILEKGRKIHTIVKAMGMETDVAVATALITMYSKCGEIS 209

Query: 168 -------------------------------EGLKFYKVLRRFSISCNEFSFAGILTICV 196
                                          E  + Y+ + +  IS N  +F  +L  C 
Sbjct: 210 VACEVFHKMTERNVVSWTAIIQANAQHRKLNEAFELYEQMLQAGISPNAVTFVSLLNSCN 269

Query: 197 KLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTT 256
             E L   R++H  +   G  ++++++++++  Y KC  + +AR +FD    RDV++W+ 
Sbjct: 270 TPEALNRGRRIHSHISERGLETDMIVANALITMYCKCNSVQEAREIFDRMSKRDVISWSA 329

Query: 257 MVSGYAKLG--DMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIR 314
           M++GYA+ G  D ES  ++F                            +L  RM    + 
Sbjct: 330 MIAGYAQSGYKDKESIDEVF----------------------------QLLERMRREGVF 361

Query: 315 PNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQV 374
           PN+ TF S L AC +  +L+ G+Q+H  L +  F  +  + +++ +MY+KCG + +  QV
Sbjct: 362 PNKVTFMSILRACTAHGALEQGRQIHAELSKVGFELDRSLQTAIFNMYAKCGSIYEAEQV 421

Query: 375 FDLTDNK------------------------------ENSMLWNTMISALTQHGYDEQAI 404
           F    NK                               N + WN MI+   Q+G   +  
Sbjct: 422 FSKMANKNVVAWTSFLSMYIKCGDLSSAEKVFSEMPTRNVVSWNLMIAGYAQNGDIVKVF 481

Query: 405 RLFHDMVRSSVKPDKITLAVILNACTH-SGLVQEGLTYFESMTHDLGIIPNQEHHACLIE 463
            L   M     +PD++T+  IL AC   +GL +  L + E++   LG+  +      LI 
Sbjct: 482 ELLSSMKAEGFQPDRVTVITILEACGALAGLERGKLVHAEAV--KLGLESDTVVATSLIG 539

Query: 464 LLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGN----IDMGRKVVDQLIDQNPQ 519
           + ++ G   +     +KM    D+  WNA+      HG+    +D+ ++++ + +  N  
Sbjct: 540 MYSKCGQVAEARTVFDKMS-NRDTVAWNAMLAGYGQHGDGLEAVDLFKRMLKERVSPNEI 598

Query: 520 SSATHGLLSSIYSALGKGRLVEKVRQLINERQ 551
           +      L+++ SA  +  LV++ R++    Q
Sbjct: 599 T------LTAVISACSRAGLVQEGREIFRMMQ 624


>gi|359480463|ref|XP_003632466.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g37170-like, partial [Vitis vinifera]
          Length = 621

 Score =  362 bits (929), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 191/583 (32%), Positives = 326/583 (55%), Gaps = 38/583 (6%)

Query: 17  NNCLIQSFLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHL 76
           +N   ++   L  + +L EAI  LD +     R  A T + +LQ C + ++L  G +VH 
Sbjct: 58  DNNFKEAIDILCEQKRLREAIQILDHVD----RPSAATYSTLLQLCLQLRALDEGMKVHA 113

Query: 77  HLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMK 136
           H K T    P   +SN ++ MY KC S V+A+++FD++  ++L S+N M+SGYA  G ++
Sbjct: 114 HTK-TSGFVPGVVISNRILDMYIKCNSLVNAKRLFDEMAERDLCSWNIMISGYAKAGRLQ 172

Query: 137 HARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRF-SISCNEFSFAGILTIC 195
            AR LFD M ERD  SW  M  GY +    EE L+ ++ ++R  +  CN+F+ +  L   
Sbjct: 173 EARKLFDQMTERDNFSWTAMTSGYVRHDQHEEALELFRAMQRHENFKCNKFTMSSALAAS 232

Query: 196 VKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWT 255
             ++ L L +++HG +L  G                                  D + W+
Sbjct: 233 AAIQSLHLGKEIHGHILRIGL-------------------------------DLDGVVWS 261

Query: 256 TMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRP 315
            +   Y K G +  A  +F++  +++ VSWT +I  Y + G  ++   LF+ ++   I P
Sbjct: 262 ALSDMYGKCGSIGEARHIFDKTVDRDVVSWTAMIDRYFKEGRREEGFALFSDLLKSGIWP 321

Query: 316 NQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVF 375
           N+ TFS  L ACA   + + GKQVHG++ R  F  ++   S+L+ MY+KCG + + R+VF
Sbjct: 322 NEFTFSGVLNACADHAAEELGKQVHGYMTRIGFDPSSFAASTLVHMYTKCGNIKNARRVF 381

Query: 376 DLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLV 435
           +    + + + W ++IS   Q+G  ++A++ F  +++S  +PD IT   +L+ACTH+GLV
Sbjct: 382 NGMP-RPDLVSWTSLISGYAQNGQPDEALQFFELLLKSGTQPDHITFVGVLSACTHAGLV 440

Query: 436 QEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHG 495
            +GL YF+S+    G+    +H+ACLI+LL+++G   +  + ++KMP E D +LW +L G
Sbjct: 441 DKGLEYFDSIKEKHGLTHTADHYACLIDLLSRSGRLQEAEDIIDKMPIEPDKFLWASLLG 500

Query: 496 VCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKE 555
            CRIHGN+ + ++  + L +  P++ AT+  L++IY+  G    V +VR++++ R   K+
Sbjct: 501 GCRIHGNLKLAKRAAEALFEIEPENPATYTTLANIYATAGLWGGVAEVRKVMDARGVVKK 560

Query: 556 QAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQMGEDA 598
             +SWIEI+ +VH F V D+ H     ++  L +L+ +M E+ 
Sbjct: 561 PGLSWIEIKREVHVFLVGDTSHAKSKEIHEFLGKLSKRMKEEG 603


>gi|224096022|ref|XP_002310520.1| predicted protein [Populus trichocarpa]
 gi|222853423|gb|EEE90970.1| predicted protein [Populus trichocarpa]
          Length = 710

 Score =  361 bits (927), Expect = 5e-97,   Method: Compositional matrix adjust.
 Identities = 190/552 (34%), Positives = 315/552 (57%), Gaps = 40/552 (7%)

Query: 59  LQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKN 118
           L  C+  K LKLG ++H  L    + +   F+ + LI  Y KCG                
Sbjct: 163 LSACSRLKDLKLGAQIH-GLISKSKYSLDVFMGSGLIDFYSKCG---------------- 205

Query: 119 LFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRR 178
                          ++  AR +FD M E++VVSWN +I  Y ++G   E L+ +  +  
Sbjct: 206 ---------------LVGCARRVFDGMEEKNVVSWNCLITCYEQNGPAIEALEAFGRMTE 250

Query: 179 FSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTG-FLSNVVISSSIVDAYAKCGELS 237
                +E + A +++ C  L   K   Q+H +V+ +  F +++++ +++VD YAKCG ++
Sbjct: 251 LGFKPDEVTLASVVSACATLAAFKEGVQIHARVVKSDKFRNDLILGNALVDMYAKCGRVN 310

Query: 238 DARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGL 297
           +AR +FD    R+ ++ TTMVSGYAK   +++A  +F  + +K+ VSW  LIAGYT+NG 
Sbjct: 311 EARCVFDRMPVRNAVSETTMVSGYAKSASVKAARSMFATIKQKDIVSWNALIAGYTQNGE 370

Query: 298 GQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFR------SN 351
            ++AL LF  +    + P  +TF + L A A++  L+ G+Q H  +++  FR       +
Sbjct: 371 NEEALGLFRMLKRESVCPTHYTFGNLLNASANLADLELGRQAHSHVVKHGFRFQSGEEPD 430

Query: 352 TIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMV 411
             V +SLIDMY KCG + +G +VF+    K++ + WNTMI    Q+GY  +A+ LF  M+
Sbjct: 431 IFVGNSLIDMYMKCGSVEEGLRVFENMVEKDH-VSWNTMIIGYAQNGYGMEALELFQKML 489

Query: 412 RSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCS 471
            S  KPD +T+   L AC+H+GLV+EG  YF SMT + G++P ++H+ C+++LL +AGC 
Sbjct: 490 ESGEKPDHVTMIGTLCACSHAGLVEEGRRYFFSMTKEHGLLPVKDHYTCMVDLLGRAGCL 549

Query: 472 DQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIY 531
           ++  + +E MP + D+ +W++L   C++H NI +G+ V +++ + +P SS  + LL+++Y
Sbjct: 550 EEAKDLIESMPKQPDAVVWSSLLSACKVHRNITLGKYVAEKIFEIDPTSSGPYVLLANMY 609

Query: 532 SALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLA 591
           S LG+      VR+L+  R   K+   SWI+I++ VH F V D  HP +  +YS+L+ L 
Sbjct: 610 SELGRWGDAVSVRKLMRRRGVVKQPGCSWIDIQSNVHVFMVKDKRHPQKKEIYSILKLLT 669

Query: 592 GQMGEDAPSLDA 603
             M +     DA
Sbjct: 670 KHMRQAGYVPDA 681



 Score =  218 bits (555), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 141/484 (29%), Positives = 238/484 (49%), Gaps = 87/484 (17%)

Query: 55  LAFILQQCAESKSLKLGKRVHLHLKLTQRKTP---TTFLSNHLISMYFKCGSDVDARKVF 111
            A +L  C + +S +  + VH  L     +TP     F+ N LI +Y KCG    ARKVF
Sbjct: 27  FAKLLDLCVKLRSSRDARSVHGRLI----QTPFCEEVFIQNRLIDVYGKCGYLDYARKVF 82

Query: 112 DKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLK 171
           D++  +N+FS+N+++S     G +  +  LF  M E+D  SWN+MI G+A+    EE L 
Sbjct: 83  DRMSERNVFSFNSIISTLMRWGFVDESAWLFSLMPEKDQCSWNSMIAGFAQHDRFEEALD 142

Query: 172 FYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYA 231
           ++  + R     N++SF   L+ C +L++LKL  Q+HG +  + +  +V + S ++D Y+
Sbjct: 143 WFVRMHRDDFVLNDYSFGSGLSACSRLKDLKLGAQIHGLISKSKYSLDVFMGSGLIDFYS 202

Query: 232 KCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAG 291
           KCG +  ARR+FD  + ++V++W  +                               I  
Sbjct: 203 KCGLVGCARRVFDGMEEKNVVSWNCL-------------------------------ITC 231

Query: 292 YTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTN-FRS 350
           Y +NG   +ALE F RM  L  +P++ T +S + ACA++ + K G Q+H  +++++ FR+
Sbjct: 232 YEQNGPAIEALEAFGRMTELGFKPDEVTLASVVSACATLAAFKEGVQIHARVVKSDKFRN 291

Query: 351 NTIVMSSLIDMYSKCGCLNDGRQVFD------------------------------LTDN 380
           + I+ ++L+DMY+KCG +N+ R VFD                               T  
Sbjct: 292 DLILGNALVDMYAKCGRVNEARCVFDRMPVRNAVSETTMVSGYAKSASVKAARSMFATIK 351

Query: 381 KENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNAC----------- 429
           +++ + WN +I+  TQ+G +E+A+ LF  + R SV P   T   +LNA            
Sbjct: 352 QKDIVSWNALIAGYTQNGENEEALGLFRMLKRESVCPTHYTFGNLLNASANLADLELGRQ 411

Query: 430 THSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYL 489
            HS +V+ G  +      D+  + N      LI++  + G  ++ +   E M  E D   
Sbjct: 412 AHSHVVKHGFRFQSGEEPDI-FVGNS-----LIDMYMKCGSVEEGLRVFENM-VEKDHVS 464

Query: 490 WNAL 493
           WN +
Sbjct: 465 WNTM 468



 Score =  198 bits (504), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 113/404 (27%), Positives = 204/404 (50%), Gaps = 56/404 (13%)

Query: 9   GINRKNLPN-NCLIQSFLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKS 67
           G+  KN+ + NCLI  +      G   EA+ +   + + G +    TLA ++  CA   +
Sbjct: 216 GMEEKNVVSWNCLITCYEQ---NGPAIEALEAFGRMTELGFKPDEVTLASVVSACATLAA 272

Query: 68  LKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLS 127
            K G ++H  +  + +      L N L+ MY KCG   +AR VFD++PV+N  S   M+S
Sbjct: 273 FKEGVQIHARVVKSDKFRNDLILGNALVDMYAKCGRVNEARCVFDRMPVRNAVSETTMVS 332

Query: 128 GYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFS 187
           GYA    +K AR++F  + ++D+VSWN +I GY ++G  EE L  +++L+R S+    ++
Sbjct: 333 GYAKSASVKAARSMFATIKQKDIVSWNALIAGYTQNGENEEALGLFRMLKRESVCPTHYT 392

Query: 188 FAGILTICVKLEELKLTRQVHGQVLVTGFL------SNVVISSSIVDAYAKCGELSDARR 241
           F  +L     L +L+L RQ H  V+  GF        ++ + +S++D Y KCG + +  R
Sbjct: 393 FGNLLNASANLADLELGRQAHSHVVKHGFRFQSGEEPDIFVGNSLIDMYMKCGSVEEGLR 452

Query: 242 LFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKA 301
           +F+    +D ++W TM+ GYA+                               NG G +A
Sbjct: 453 VFENMVEKDHVSWNTMIIGYAQ-------------------------------NGYGMEA 481

Query: 302 LELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQV-------HGFL-IRTNFRSNTI 353
           LELF +M+    +P+  T    LCAC+    ++ G++        HG L ++ ++     
Sbjct: 482 LELFQKMLESGEKPDHVTMIGTLCACSHAGLVEEGRRYFFSMTKEHGLLPVKDHY----- 536

Query: 354 VMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQH 397
             + ++D+  + GCL + + + +    + ++++W++++SA   H
Sbjct: 537 --TCMVDLLGRAGCLEEAKDLIESMPKQPDAVVWSSLLSACKVH 578



 Score =  183 bits (465), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 113/373 (30%), Positives = 188/373 (50%), Gaps = 41/373 (10%)

Query: 188 FAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETD 247
           FA +L +CVKL   +  R VHG+++ T F   V I + ++D Y KCG L  AR++FD   
Sbjct: 27  FAKLLDLCVKLRSSRDARSVHGRLIQTPFCEEVFIQNRLIDVYGKCGYLDYARKVFDRMS 86

Query: 248 ARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTR 307
            R+V ++ +++S   + G ++ ++ LF+ MPEK+  SW ++IAG+ ++   ++AL+ F R
Sbjct: 87  ERNVFSFNSIISTLMRWGFVDESAWLFSLMPEKDQCSWNSMIAGFAQHDRFEEALDWFVR 146

Query: 308 MMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGC 367
           M       N ++F S L AC+ +  LK G Q+HG + ++ +  +  + S LID YSKCG 
Sbjct: 147 MHRDDFVLNDYSFGSGLSACSRLKDLKLGAQIHGLISKSKYSLDVFMGSGLIDFYSKCGL 206

Query: 368 LNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILN 427
           +   R+VFD  + K N + WN +I+   Q+G   +A+  F  M     KPD++TLA +++
Sbjct: 207 VGCARRVFDGMEEK-NVVSWNCLITCYEQNGPAIEALEAFGRMTELGFKPDEVTLASVVS 265

Query: 428 ACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDS 487
           AC      +EG                       +++ A+   SD+  N L         
Sbjct: 266 ACATLAAFKEG-----------------------VQIHARVVKSDKFRNDL--------- 293

Query: 488 YLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLI 547
            L NAL  +    G ++  R V D++  +N  S  T      + S   K   V+  R + 
Sbjct: 294 ILGNALVDMYAKCGRVNEARCVFDRMPVRNAVSETT------MVSGYAKSASVKAARSMF 347

Query: 548 NERQFKKEQAISW 560
                K++  +SW
Sbjct: 348 A--TIKQKDIVSW 358


>gi|297831842|ref|XP_002883803.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297329643|gb|EFH60062.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 697

 Score =  361 bits (927), Expect = 6e-97,   Method: Compositional matrix adjust.
 Identities = 197/595 (33%), Positives = 326/595 (54%), Gaps = 49/595 (8%)

Query: 13  KNLP--NNCLIQSFLSLISK-GQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLK 69
           +++P  + C   S +S  ++  +  EA+    ++ + G  L   T A  L  C+    + 
Sbjct: 110 RSMPERDQCTWNSMVSGFAQHDRCEEALYYFAMMHKEGFVLNEYTFASGLSACSGLNDMN 169

Query: 70  LGKRVHLHLKLTQRKTPT---TFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNML 126
            G ++H  +     K+P     ++ + L+ MY KCG+  DA++VF               
Sbjct: 170 RGVQIHSLIA----KSPCLSDVYIGSALVDMYSKCGNVNDAQQVF--------------- 210

Query: 127 SGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEF 186
                           D M +R+VVSWN++I  Y ++G   E LK ++V+    +  +E 
Sbjct: 211 ----------------DEMGDRNVVSWNSLITCYEQNGPAVEALKVFQVMLESWVEPDEV 254

Query: 187 SFAGILTICVKLEELKLTRQVHGQVLVTGFLSN-VVISSSIVDAYAKCGELSDARRLFDE 245
           + A +++ C  L  +K+ ++VH +V+    L N +++S++ VD YAKC  + +AR +FD 
Sbjct: 255 TLASVISACASLSAIKVGQEVHARVVKMDKLRNDIILSNAFVDMYAKCSRIKEARFIFDS 314

Query: 246 TDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELF 305
              R+V+  T+MVSGYA     ++A  +F +M E+N VSW  LIAGYT+NG  ++AL LF
Sbjct: 315 MPIRNVIAETSMVSGYAMAASTKAARLMFTKMAERNVVSWNALIAGYTQNGENEEALSLF 374

Query: 306 TRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVH------GFLIRTNFRSNTIVMSSLI 359
             +    + P  +TF++ L ACA +  L  G Q H      GF  ++    +  V +SLI
Sbjct: 375 CLLKRESVCPTHYTFANILKACADLADLHLGMQAHVHVLKHGFKFQSGEEDDIFVGNSLI 434

Query: 360 DMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDK 419
           DMY KCGC+ +G  VF     ++  + WN MI    Q+GY  +A+ LF +M+ S  KPD 
Sbjct: 435 DMYVKCGCVEEGYLVFRKMMERD-CVSWNAMIIGFAQNGYGNEALELFREMLDSGEKPDH 493

Query: 420 ITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLE 479
           IT+  +L+AC H+G V+EG  YF SMT D G+ P ++H+ C+++LL +AG  ++  + +E
Sbjct: 494 ITMIGVLSACGHAGFVEEGRHYFSSMTRDFGVAPLRDHYTCMVDLLGRAGFLEEAKSIIE 553

Query: 480 KMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRL 539
           +MP + DS +W +L   C++H NI +G+ V ++L +    +S  + LLS++Y+ LGK   
Sbjct: 554 EMPVQPDSVIWGSLLAACKVHRNITLGKYVAEKLFEVETSNSGPYVLLSNMYAELGKWGD 613

Query: 540 VEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQM 594
              VR+L+ +    K+   SWI+I    H F V D  HP +  ++S+L+ L  +M
Sbjct: 614 AMNVRKLMRKEGVTKQPGCSWIKIPGHAHVFMVKDKSHPRKKQIHSLLDILIAEM 668



 Score =  226 bits (575), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 142/500 (28%), Positives = 249/500 (49%), Gaps = 82/500 (16%)

Query: 88  TFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAE 147
            F+ N LI  Y KCGS  D R++FDK+P +N+F++N++++G   LG +  A +LF +M E
Sbjct: 55  VFIQNRLIDAYAKCGSLEDGRQLFDKMPQRNVFTWNSVVTGLTKLGFLDEADSLFRSMPE 114

Query: 148 RDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQV 207
           RD  +WN+M+ G+A+    EE L ++ ++ +     NE++FA  L+ C  L ++    Q+
Sbjct: 115 RDQCTWNSMVSGFAQHDRCEEALYYFAMMHKEGFVLNEYTFASGLSACSGLNDMNRGVQI 174

Query: 208 HGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDM 267
           H  +  +  LS+V I S++VD Y+KCG ++DA+++FDE   R+V++W ++++ Y      
Sbjct: 175 HSLIAKSPCLSDVYIGSALVDMYSKCGNVNDAQQVFDEMGDRNVVSWNSLITCY------ 228

Query: 268 ESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCAC 327
                                     +NG   +AL++F  M+   + P++ T +S + AC
Sbjct: 229 -------------------------EQNGPAVEALKVFQVMLESWVEPDEVTLASVISAC 263

Query: 328 ASIVSLKHGKQVHGFLIRTNFRSNTIVMS-SLIDMYSKCGCLNDGRQVFDLTDNK----E 382
           AS+ ++K G++VH  +++ +   N I++S + +DMY+KC  + + R +FD    +    E
Sbjct: 264 ASLSAIKVGQEVHARVVKMDKLRNDIILSNAFVDMYAKCSRIKEARFIFDSMPIRNVIAE 323

Query: 383 NSML--------------------------WNTMISALTQHGYDEQAIRLFHDMVRSSVK 416
            SM+                          WN +I+  TQ+G +E+A+ LF  + R SV 
Sbjct: 324 TSMVSGYAMAASTKAARLMFTKMAERNVVSWNALIAGYTQNGENEEALSLFCLLKRESVC 383

Query: 417 PDKITLAVILNAC-----------THSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELL 465
           P   T A IL AC            H  +++ G   F+S   D   + N      LI++ 
Sbjct: 384 PTHYTFANILKACADLADLHLGMQAHVHVLKHGFK-FQSGEEDDIFVGNS-----LIDMY 437

Query: 466 AQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHG 525
            + GC ++      KM  E D   WNA+      +G  +   ++  +++D   +    H 
Sbjct: 438 VKCGCVEEGYLVFRKM-MERDCVSWNAMIIGFAQNGYGNEALELFREMLDSGEKPD--HI 494

Query: 526 LLSSIYSALGKGRLVEKVRQ 545
            +  + SA G    VE+ R 
Sbjct: 495 TMIGVLSACGHAGFVEEGRH 514



 Score =  197 bits (500), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 98/270 (36%), Positives = 166/270 (61%), Gaps = 5/270 (1%)

Query: 170 LKFYKVLRRFSISCNEFSFAGILTICVKLEELKL-TRQVHGQVLVTGFLSNVVISSSIVD 228
           LK    L  F++S     FA +L  C+KL+   +  R VH  V+ +GF + V I + ++D
Sbjct: 7   LKLAGDLSSFTVSS---PFAKLLDSCIKLKLSAIDVRCVHASVIKSGFSNEVFIQNRLID 63

Query: 229 AYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTL 288
           AYAKCG L D R+LFD+   R+V TW ++V+G  KLG ++ A  LF  MPE++  +W ++
Sbjct: 64  AYAKCGSLEDGRQLFDKMPQRNVFTWNSVVTGLTKLGFLDEADSLFRSMPERDQCTWNSM 123

Query: 289 IAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNF 348
           ++G+ ++   ++AL  F  M       N++TF+S L AC+ +  +  G Q+H  + ++  
Sbjct: 124 VSGFAQHDRCEEALYYFAMMHKEGFVLNEYTFASGLSACSGLNDMNRGVQIHSLIAKSPC 183

Query: 349 RSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFH 408
            S+  + S+L+DMYSKCG +ND +QVFD   ++ N + WN++I+   Q+G   +A+++F 
Sbjct: 184 LSDVYIGSALVDMYSKCGNVNDAQQVFDEMGDR-NVVSWNSLITCYEQNGPAVEALKVFQ 242

Query: 409 DMVRSSVKPDKITLAVILNACTHSGLVQEG 438
            M+ S V+PD++TLA +++AC     ++ G
Sbjct: 243 VMLESWVEPDEVTLASVISACASLSAIKVG 272


>gi|297851096|ref|XP_002893429.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297339271|gb|EFH69688.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 790

 Score =  359 bits (922), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 184/513 (35%), Positives = 300/513 (58%), Gaps = 7/513 (1%)

Query: 87  TTFLSNHLISMYFKCGSDVD----ARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLF 142
            T +SN L+S+Y +C S       ARKVFD IP K+  S+  M++GY   G     + L 
Sbjct: 183 VTSVSNALVSVYSRCASSPSLLHSARKVFDDIPEKDERSWTTMMTGYVKNGCFDLGKELL 242

Query: 143 DNMAER-DVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEEL 201
             M E   +V++N MI GY   G  +E L+  + +    I  +EF++  ++  C     L
Sbjct: 243 KGMDENMKLVAYNAMISGYVNCGLYQEALEMVRRMVSSGIELDEFTYPSVIRACANARLL 302

Query: 202 KLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGY 261
           +L +QVH  VL     S     +S+V  Y KCG+ ++AR +F++  A+D+++W  ++SGY
Sbjct: 303 QLGKQVHAYVLRREDFS-FHFDNSLVTLYYKCGKFNEARAIFEKMPAKDLVSWNALLSGY 361

Query: 262 AKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFS 321
              G +  A  +F EM EKN +SW  +I+G   NG G++ L+LF+ M      P  + FS
Sbjct: 362 VSSGHIGEAKLIFKEMKEKNILSWMIMISGLAENGFGEEGLKLFSCMKREGFEPCDYAFS 421

Query: 322 SCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNK 381
             + +CA + +  +G+Q H  L++  F S+    ++LI MY+KCG + + +QVF  T   
Sbjct: 422 GAIKSCAVLGAYCNGQQFHAQLVKIGFDSSLSAGNALITMYAKCGVVEEAQQVFR-TMPC 480

Query: 382 ENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTY 441
            +S+ WN +I+AL QHG+  +A+ ++ +M++  ++PD+IT   +L AC+H+GLV +G  Y
Sbjct: 481 LDSVSWNALIAALGQHGHGVEAVDVYEEMLKKGIRPDRITFLTVLTACSHAGLVDQGRKY 540

Query: 442 FESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHG 501
           F SM     I P  +H+A LI+LL ++G   +  + +E +P++  + +W AL   CR+HG
Sbjct: 541 FNSMETVYRIPPGADHYARLIDLLCRSGKFSEAESIIESLPFKPTAEIWEALLSGCRVHG 600

Query: 502 NIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWI 561
           N+++G    D+L    P+   T+ LLS++Y+A G+   V +VR+L+ +R  KKE A SWI
Sbjct: 601 NMELGIIAADKLFGLIPEHDGTYMLLSNMYAATGQWEEVARVRKLMRDRGVKKEVACSWI 660

Query: 562 EIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQM 594
           E+E +VH F V D+ HP  + +Y  L+ L  +M
Sbjct: 661 EMETQVHTFLVDDTSHPEAEAVYKYLQDLGKEM 693



 Score =  179 bits (453), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 144/542 (26%), Positives = 257/542 (47%), Gaps = 48/542 (8%)

Query: 48  IRLPAETLAFILQQCAESK--SLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDV 105
           +R  A   A  L+ C   +  SL+L + VH ++ +T    P   + N LI +Y K  S++
Sbjct: 8   VRAIANRYAANLRLCLPLRRTSLQLARAVHGNI-ITFGFQPHAHILNRLIDVYCK-SSEL 65

Query: 106 D-ARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDN--MAERDVVSWNTMIIGYAK 162
           D AR++FD+I   +  +   M+SGY   G +  AR++F+   ++ RD V +N MI G++ 
Sbjct: 66  DYARQLFDEISEPDKIARTTMVSGYCASGDIALARSVFEETPVSMRDTVMYNAMITGFSH 125

Query: 163 SGAVEEGLKFYKVLRRFSISCNEFSFAGILT-ICVKLEELKLTRQVHGQVLVTGFLSNVV 221
           +      +  +  ++      ++F++A +L  + + +++ K   Q H   L +G      
Sbjct: 126 NNDGYSAINLFCKMKHEGFKPDDFTYASVLAGLALVVDDEKQCVQFHAAALKSGAGYVTS 185

Query: 222 ISSSIVDAYAKCGE----LSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEM 277
           +S+++V  Y++C      L  AR++FD+   +D  +WTTM++GY K G  +   +L   M
Sbjct: 186 VSNALVSVYSRCASSPSLLHSARKVFDDIPEKDERSWTTMMTGYVKNGCFDLGKELLKGM 245

Query: 278 PEK-NPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHG 336
            E    V++  +I+GY   GL Q+ALE+  RM+   I  ++ T+ S + ACA+   L+ G
Sbjct: 246 DENMKLVAYNAMISGYVNCGLYQEALEMVRRMVSSGIELDEFTYPSVIRACANARLLQLG 305

Query: 337 KQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFD-------------------- 376
           KQVH +++R    S     +SL+ +Y KCG  N+ R +F+                    
Sbjct: 306 KQVHAYVLRREDFSFHFD-NSLVTLYYKCGKFNEARAIFEKMPAKDLVSWNALLSGYVSS 364

Query: 377 ---------LTDNKENSML-WNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVIL 426
                      + KE ++L W  MIS L ++G+ E+ ++LF  M R   +P     +  +
Sbjct: 365 GHIGEAKLIFKEMKEKNILSWMIMISGLAENGFGEEGLKLFSCMKREGFEPCDYAFSGAI 424

Query: 427 NACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHD 486
            +C   G    G   F +    +G   +      LI + A+ G  ++       MP   D
Sbjct: 425 KSCAVLGAYCNG-QQFHAQLVKIGFDSSLSAGNALITMYAKCGVVEEAQQVFRTMPC-LD 482

Query: 487 SYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQL 546
           S  WNAL      HG+      V ++++ +  +      L  ++ +A     LV++ R+ 
Sbjct: 483 SVSWNALIAALGQHGHGVEAVDVYEEMLKKGIRPDRITFL--TVLTACSHAGLVDQGRKY 540

Query: 547 IN 548
            N
Sbjct: 541 FN 542



 Score =  172 bits (436), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 105/396 (26%), Positives = 198/396 (50%), Gaps = 39/396 (9%)

Query: 11  NRKNLPNNCLIQSFLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKL 70
           N K +  N +I  +   ++ G   EA+  +  +   GI L   T   +++ CA ++ L+L
Sbjct: 248 NMKLVAYNAMISGY---VNCGLYQEALEMVRRMVSSGIELDEFTYPSVIRACANARLLQL 304

Query: 71  GKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYA 130
           GK+VH ++   +R+  +    N L+++Y+KCG   +AR +F+K+P K+L S+N +LSGY 
Sbjct: 305 GKQVHAYV--LRREDFSFHFDNSLVTLYYKCGKFNEARAIFEKMPAKDLVSWNALLSGYV 362

Query: 131 NLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAG 190
           + G +  A+ +F  M E++++SW  MI G A++G  EEGLK +  ++R      +++F+G
Sbjct: 363 SSGHIGEAKLIFKEMKEKNILSWMIMISGLAENGFGEEGLKLFSCMKREGFEPCDYAFSG 422

Query: 191 ILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARD 250
            +  C  L      +Q H Q++  GF S++   ++++  YAKCG + +A+++F      D
Sbjct: 423 AIKSCAVLGAYCNGQQFHAQLVKIGFDSSLSAGNALITMYAKCGVVEEAQQVFRTMPCLD 482

Query: 251 VLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMI 310
            ++W                                 LIA   ++G G +A++++  M+ 
Sbjct: 483 SVSW-------------------------------NALIAALGQHGHGVEAVDVYEEMLK 511

Query: 311 LRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFR--SNTIVMSSLIDMYSKCGCL 368
             IRP++ TF + L AC+    +  G++    +  T +R        + LID+  + G  
Sbjct: 512 KGIRPDRITFLTVLTACSHAGLVDQGRKYFNSM-ETVYRIPPGADHYARLIDLLCRSGKF 570

Query: 369 NDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAI 404
           ++   + +    K  + +W  ++S    HG  E  I
Sbjct: 571 SEAESIIESLPFKPTAEIWEALLSGCRVHGNMELGI 606



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 57/287 (19%), Positives = 115/287 (40%), Gaps = 62/287 (21%)

Query: 310 ILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLN 369
           ++R   N++  +  LC      SL+  + VHG +I   F+ +  +++ LID+Y K   L+
Sbjct: 7   LVRAIANRYAANLRLCLPLRRTSLQLARAVHGNIITFGFQPHAHILNRLIDVYCKSSELD 66

Query: 370 DGRQVFDLTDNKE--------------------------------NSMLWNTMISALTQH 397
             RQ+FD     +                                +++++N MI+  + +
Sbjct: 67  YARQLFDEISEPDKIARTTMVSGYCASGDIALARSVFEETPVSMRDTVMYNAMITGFSHN 126

Query: 398 GYDEQAIRLFHDMVRSSVKPDKITLAVILNACT------------HSGLVQEGLTYFESM 445
                AI LF  M     KPD  T A +L                H+  ++ G  Y  S+
Sbjct: 127 NDGYSAINLFCKMKHEGFKPDDFTYASVLAGLALVVDDEKQCVQFHAAALKSGAGYVTSV 186

Query: 446 THDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEK----MPYEHDSYLWNALHGVCRIHG 501
           ++             L+ + ++   S  L++   K    +P E D   W  +      +G
Sbjct: 187 SN------------ALVSVYSRCASSPSLLHSARKVFDDIP-EKDERSWTTMMTGYVKNG 233

Query: 502 NIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLIN 548
             D+G++++  + D+N +  A + ++S   +       +E VR++++
Sbjct: 234 CFDLGKELLKGM-DENMKLVAYNAMISGYVNCGLYQEALEMVRRMVS 279


>gi|224106277|ref|XP_002314110.1| predicted protein [Populus trichocarpa]
 gi|222850518|gb|EEE88065.1| predicted protein [Populus trichocarpa]
          Length = 738

 Score =  359 bits (922), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 167/478 (34%), Positives = 292/478 (61%), Gaps = 2/478 (0%)

Query: 118 NLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLR 177
           +LF  N+++  Y++LG +  A  +F  + E+D+VSWN+MI G+ + G+ EE L+ +K ++
Sbjct: 165 DLFISNSLIHFYSSLGDLDSAYLVFSKIVEKDIVSWNSMISGFVQGGSPEEALQLFKRMK 224

Query: 178 RFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELS 237
             +   N  +  G+L+ C K  +L+  R     +   G   N+++S++++D Y KCG L 
Sbjct: 225 MENARPNRVTMVGVLSACAKRIDLEFGRWACDYIERNGIDINLILSNAMLDMYVKCGSLE 284

Query: 238 DARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGL 297
           DARRLFD+ + +D+++WTTM+ GYAK+GD ++A ++F+ MP ++  +W  LI+ Y +NG 
Sbjct: 285 DARRLFDKMEEKDIVSWTTMIDGYAKVGDYDAARRVFDVMPREDITAWNALISSYQQNGK 344

Query: 298 GQKALELFTRMMILR-IRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMS 356
            ++AL +F  + + +  +PN+ T +S L ACA + ++  G  +H ++ +   + N  + +
Sbjct: 345 PKEALAIFRELQLNKNTKPNEVTLASTLAACAQLGAMDLGGWIHVYIKKQGIKLNFHITT 404

Query: 357 SLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVK 416
           SLIDMYSKCG L    +VF  +  + +  +W+ MI+ L  HG+   AI LF  M  + VK
Sbjct: 405 SLIDMYSKCGHLEKALEVF-YSVERRDVFVWSAMIAGLAMHGHGRAAIDLFSKMQETKVK 463

Query: 417 PDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMN 476
           P+ +T   +L AC+HSGLV EG  +F  M    G++P  +H+AC++++L +AGC ++ + 
Sbjct: 464 PNAVTFTNLLCACSHSGLVDEGRLFFNQMRPVYGVVPGSKHYACMVDILGRAGCLEEAVE 523

Query: 477 QLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGK 536
            +EKMP    + +W AL G CRI+GN+++      +L++ +  +   + LLS+IY+  GK
Sbjct: 524 LIEKMPIVPSASVWGALLGACRIYGNVELAEMACSRLLETDSNNHGAYVLLSNIYAKAGK 583

Query: 537 GRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQM 594
              V ++RQ +     +KE   S IE+   +H F V D+ HP+   +YS L+++  ++
Sbjct: 584 WDCVSRLRQHMKVSGLEKEPGCSSIEVNGIIHEFLVGDNSHPLSTEIYSKLDEIVARI 641



 Score =  156 bits (395), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 102/394 (25%), Positives = 179/394 (45%), Gaps = 49/394 (12%)

Query: 18  NCLIQSFLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLH 77
           N +I  F   +  G   EA+     +     R    T+  +L  CA+   L+ G+    +
Sbjct: 201 NSMISGF---VQGGSPEEALQLFKRMKMENARPNRVTMVGVLSACAKRIDLEFGRWACDY 257

Query: 78  LKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKH 137
           ++          LSN ++ MY KCGS  DAR++FDK+  K++ S+  M+ GYA +G    
Sbjct: 258 IERNGIDI-NLILSNAMLDMYVKCGSLEDARRLFDKMEEKDIVSWTTMIDGYAKVGDYDA 316

Query: 138 ARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLR-RFSISCNEFSFAGILTICV 196
           AR +FD M   D+ +WN +I  Y ++G  +E L  ++ L+   +   NE + A  L  C 
Sbjct: 317 ARRVFDVMPREDITAWNALISSYQQNGKPKEALAIFRELQLNKNTKPNEVTLASTLAACA 376

Query: 197 KLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTT 256
           +L  + L   +H  +   G   N  I++S++D Y+KCG L  A  +F   + RDV  W+ 
Sbjct: 377 QLGAMDLGGWIHVYIKKQGIKLNFHITTSLIDMYSKCGHLEKALEVFYSVERRDVFVWSA 436

Query: 257 MVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPN 316
           M++G A  G   +A  LF++M E                                +++PN
Sbjct: 437 MIAGLAMHGHGRAAIDLFSKMQET-------------------------------KVKPN 465

Query: 317 QHTFSSCLCACASIVSLKHG-------KQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLN 369
             TF++ LCAC+    +  G       + V+G +  +         + ++D+  + GCL 
Sbjct: 466 AVTFTNLLCACSHSGLVDEGRLFFNQMRPVYGVVPGSKH------YACMVDILGRAGCLE 519

Query: 370 DGRQVFDLTDNKENSMLWNTMISALTQHGYDEQA 403
           +  ++ +      ++ +W  ++ A   +G  E A
Sbjct: 520 EAVELIEKMPIVPSASVWGALLGACRIYGNVELA 553



 Score =  147 bits (371), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 119/495 (24%), Positives = 213/495 (43%), Gaps = 111/495 (22%)

Query: 54  TLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCG----SDVD-AR 108
           T+  ++ +CA  K LK   ++H H+     +T   F       ++  C     S +D A 
Sbjct: 32  TVPILIDKCANKKHLK---QLHAHM----LRTGLFFDPPSATKLFTACALSSPSSLDYAC 84

Query: 109 KVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEE 168
           KVFD+IP  NL++                               WNT+I  +A S    +
Sbjct: 85  KVFDQIPRPNLYT-------------------------------WNTLIRAFASSPKPIQ 113

Query: 169 GL-KFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIV 227
           GL  F ++L       N ++F  ++    ++  L   + +HG V+   F S++ IS+S++
Sbjct: 114 GLLVFIQMLHESQRFPNSYTFPFVIKAATEVSSLLAGQAIHGMVMKASFGSDLFISNSLI 173

Query: 228 DAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTT 287
             Y+  G+L  A  +F +   +D+++W +M+SG+ + G  E                   
Sbjct: 174 HFYSSLGDLDSAYLVFSKIVEKDIVSWNSMISGFVQGGSPE------------------- 214

Query: 288 LIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTN 347
                       +AL+LF RM +   RPN+ T    L ACA  + L+ G+    ++ R  
Sbjct: 215 ------------EALQLFKRMKMENARPNRVTMVGVLSACAKRIDLEFGRWACDYIERNG 262

Query: 348 FRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNK-------------------------- 381
              N I+ ++++DMY KCG L D R++FD  + K                          
Sbjct: 263 IDINLILSNAMLDMYVKCGSLEDARRLFDKMEEKDIVSWTTMIDGYAKVGDYDAARRVFD 322

Query: 382 ----ENSMLWNTMISALTQHGYDEQAIRLFHDM-VRSSVKPDKITLAVILNACTHSGLVQ 436
               E+   WN +IS+  Q+G  ++A+ +F ++ +  + KP+++TLA  L AC   G + 
Sbjct: 323 VMPREDITAWNALISSYQQNGKPKEALAIFRELQLNKNTKPNEVTLASTLAACAQLGAMD 382

Query: 437 EGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGV 496
            G  +        GI  N      LI++ ++ G  ++ +     +    D ++W+A+   
Sbjct: 383 LG-GWIHVYIKKQGIKLNFHITTSLIDMYSKCGHLEKALEVFYSVE-RRDVFVWSAMIAG 440

Query: 497 CRIHGNIDMGRKVVD 511
             +HG+   GR  +D
Sbjct: 441 LAMHGH---GRAAID 452


>gi|449497589|ref|XP_004160443.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Cucumis sativus]
          Length = 776

 Score =  359 bits (921), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 182/531 (34%), Positives = 321/531 (60%), Gaps = 27/531 (5%)

Query: 92  NHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVV 151
           N ++S + + G   +ARK+FD++ VKN  S+N +LS Y   G ++ AR LFD+  + ++V
Sbjct: 157 NAMLSGFAQNGFVEEARKIFDQMLVKNEISWNGLLSAYVQNGRIEDARRLFDSKMDWEIV 216

Query: 152 SWNTMIIGYAKSGAVEEGLK-FYKVLRRFSISCN----EFSFAGILTICVKL-EELKLTR 205
           SWN ++ GY +   +++    F ++  R  IS N     ++  G+L+   +L EEL +  
Sbjct: 217 SWNCLMGGYVRKKRLDDARSLFDRMPVRDKISWNIMITGYAQNGLLSEARRLFEELPIRD 276

Query: 206 QVHGQVLVTGFLSNVVIS-----------------SSIVDAYAKCGELSDARRLFDETDA 248
                 +V+GF+ N ++                  ++++  Y +  ++  AR LFD+  +
Sbjct: 277 VFAWTAMVSGFVQNGMLDEATRIFEEMPEKNEVSWNAMIAGYVQSQQIEKARELFDQMPS 336

Query: 249 RDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRM 308
           R+  +W TMV+GYA+ G+++ A  LF+EMP+++ +SW  +I+GY ++G  ++AL LF +M
Sbjct: 337 RNTSSWNTMVTGYAQCGNIDQAKILFDEMPQRDCISWAAMISGYAQSGQSEEALHLFIKM 396

Query: 309 MILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCL 368
                  N+   +  L +CA I +L+ GKQ+HG L++  F++  I  ++L+ MY KCG +
Sbjct: 397 KRDGGILNRSALACALSSCAEIAALELGKQLHGRLVKAGFQTGYIAGNALLAMYGKCGSI 456

Query: 369 NDGRQVF-DLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILN 427
            +   VF D+T+  ++ + WNTMI+   +HG+ ++A+ LF  M + ++KPD +TL  +L+
Sbjct: 457 EEAFDVFEDITE--KDIVSWNTMIAGYARHGFGKEALALFESM-KMTIKPDDVTLVGVLS 513

Query: 428 ACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDS 487
           AC+H+GLV +G+ YF SM  + GI  N +H+ C+I+LL +AG  D+ +N ++ MP+  D+
Sbjct: 514 ACSHTGLVDKGMEYFNSMYQNYGITANAKHYTCMIDLLGRAGRLDEALNLMKSMPFYPDA 573

Query: 488 YLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLI 547
             W AL G  RIHG+ ++G K  +++ +  P +S  + LLS++Y+A G+ R V ++R  +
Sbjct: 574 ATWGALLGASRIHGDTELGEKAAEKVFEMEPDNSGMYVLLSNLYAASGRWREVREMRSKM 633

Query: 548 NERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQMGEDA 598
            ++  KK    SW+EI+NK H F+V D  HP  + +Y+ LE+L  ++ +D 
Sbjct: 634 RDKGVKKVPGYSWVEIQNKTHIFTVGDCSHPEAERIYAYLEELDLELKKDG 684



 Score =  182 bits (463), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 132/447 (29%), Positives = 211/447 (47%), Gaps = 75/447 (16%)

Query: 82  QRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNL 141
           +R++  T+  N +IS Y        ARKVF+K+P ++L S+N MLSGY   G +  AR L
Sbjct: 87  RRRSTVTY--NAMISGYLSNNKFDCARKVFEKMPDRDLISWNVMLSGYVKNGNLSAARAL 144

Query: 142 FDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEEL 201
           F+ M E+DVVSWN M+ G+A++G VEE  K +  +    +  NE S+ G+L+  V+   +
Sbjct: 145 FNQMPEKDVVSWNAMLSGFAQNGFVEEARKIFDQM----LVKNEISWNGLLSAYVQNGRI 200

Query: 202 KLTRQ----------VHGQVLVTGFLSNVVISSS-----------------IVDAYAKCG 234
           +  R+          V    L+ G++    +  +                 ++  YA+ G
Sbjct: 201 EDARRLFDSKMDWEIVSWNCLMGGYVRKKRLDDARSLFDRMPVRDKISWNIMITGYAQNG 260

Query: 235 ELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTR 294
            LS+ARRLF+E   RDV  WT MVSG+ + G ++ A+++F EMPEKN VSW  +IAGY +
Sbjct: 261 LLSEARRLFEELPIRDVFAWTAMVSGFVQNGMLDEATRIFEEMPEKNEVSWNAMIAGYVQ 320

Query: 295 NGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIV 354
           +   +KA ELF +M      P+++T S                             NT+V
Sbjct: 321 SQQIEKARELFDQM------PSRNTSS----------------------------WNTMV 346

Query: 355 MSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSS 414
                  Y++CG ++  + +FD    ++  + W  MIS   Q G  E+A+ LF  M R  
Sbjct: 347 TG-----YAQCGNIDQAKILFDEMPQRD-CISWAAMISGYAQSGQSEEALHLFIKMKRDG 400

Query: 415 VKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQL 474
              ++  LA  L++C     ++ G      +    G          L+ +  + G  ++ 
Sbjct: 401 GILNRSALACALSSCAEIAALELGKQLHGRLVK-AGFQTGYIAGNALLAMYGKCGSIEEA 459

Query: 475 MNQLEKMPYEHDSYLWNALHGVCRIHG 501
            +  E +  E D   WN +      HG
Sbjct: 460 FDVFEDIT-EKDIVSWNTMIAGYARHG 485



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 117/435 (26%), Positives = 210/435 (48%), Gaps = 37/435 (8%)

Query: 92  NHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVV 151
           N  IS Y + G    A  VF+ +  ++  +YN M+SGY +      AR +F+ M +RD++
Sbjct: 64  NRKISAYMRKGQCESALSVFNGMRRRSTVTYNAMISGYLSNNKFDCARKVFEKMPDRDLI 123

Query: 152 SWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQV 211
           SWN M+ GY K+G +      +  +    +     S+  +L+   +   ++  R++  Q+
Sbjct: 124 SWNVMLSGYVKNGNLSAARALFNQMPEKDV----VSWNAMLSGFAQNGFVEEARKIFDQM 179

Query: 212 LVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESAS 271
           LV     N +  + ++ AY + G + DARRLFD     ++++W  ++ GY +   ++ A 
Sbjct: 180 LV----KNEISWNGLLSAYVQNGRIEDARRLFDSKMDWEIVSWNCLMGGYVRKKRLDDAR 235

Query: 272 KLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIV 331
            LF+ MP ++ +SW  +I GY +NGL  +A  LF  +      P +  F     A  ++V
Sbjct: 236 SLFDRMPVRDKISWNIMITGYAQNGLLSEARRLFEEL------PIRDVF-----AWTAMV 284

Query: 332 S--LKHGKQVHGFLIRTNF-RSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWN 388
           S  +++G       I       N +  +++I  Y +   +   R++FD   ++ N+  WN
Sbjct: 285 SGFVQNGMLDEATRIFEEMPEKNEVSWNAMIAGYVQSQQIEKARELFDQMPSR-NTSSWN 343

Query: 389 TMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHD 448
           TM++   Q G  +QA  LF +M +     D I+ A +++    SG  +E L  F  M  D
Sbjct: 344 TMVTGYAQCGNIDQAKILFDEMPQR----DCISWAAMISGYAQSGQSEEALHLFIKMKRD 399

Query: 449 LGIIPNQEHHACLIELLAQAGC---SDQLMNQLEKMPYEHDSYLWNAL---HGVCRIHGN 502
            GI+ N+   AC +   A+        QL  +L K  ++      NAL   +G C   G+
Sbjct: 400 GGIL-NRSALACALSSCAEIAALELGKQLHGRLVKAGFQTGYIAGNALLAMYGKC---GS 455

Query: 503 IDMGRKVVDQLIDQN 517
           I+    V + + +++
Sbjct: 456 IEEAFDVFEDITEKD 470



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 88/378 (23%), Positives = 169/378 (44%), Gaps = 60/378 (15%)

Query: 137 HARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICV 196
            ++N    + + D+V WN  I  Y + G  E  L  +  +RR S                
Sbjct: 47  ESKNSDSTIVDSDIVKWNRKISAYMRKGQCESALSVFNGMRRRST--------------- 91

Query: 197 KLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTT 256
                     V    +++G+LSN               +   AR++F++   RD+++W  
Sbjct: 92  ----------VTYNAMISGYLSN--------------NKFDCARKVFEKMPDRDLISWNV 127

Query: 257 MVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPN 316
           M+SGY K G++ +A  LFN+MPEK+ VSW  +++G+ +NG  ++A ++F +M++     N
Sbjct: 128 MLSGYVKNGNLSAARALFNQMPEKDVVSWNAMLSGFAQNGFVEEARKIFDQMLV----KN 183

Query: 317 QHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFD 376
           + +++  L A      ++  ++    L  +      +  + L+  Y +   L+D R +FD
Sbjct: 184 EISWNGLLSAYVQNGRIEDARR----LFDSKMDWEIVSWNCLMGGYVRKKRLDDARSLFD 239

Query: 377 LTDNKENSMLWNTMISALTQHGYDEQAIRLFHDM-VRSSVKPDKITLAVILNACTHSGLV 435
               ++  + WN MI+   Q+G   +A RLF ++ +R     D      +++    +G++
Sbjct: 240 RMPVRDK-ISWNIMITGYAQNGLLSEARRLFEELPIR-----DVFAWTAMVSGFVQNGML 293

Query: 436 QEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHG 495
            E    FE M        N+     +I    Q+   ++     ++MP  + S  WN +  
Sbjct: 294 DEATRIFEEMPE-----KNEVSWNAMIAGYVQSQQIEKARELFDQMPSRNTSS-WNTMVT 347

Query: 496 VCRIHGNIDMGRKVVDQL 513
                GNID  + + D++
Sbjct: 348 GYAQCGNIDQAKILFDEM 365



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 82/346 (23%), Positives = 157/346 (45%), Gaps = 33/346 (9%)

Query: 218 SNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEM 277
           S++V  +  + AY + G+   A  +F+    R  +T+  M+SGY      + A K+F +M
Sbjct: 58  SDIVKWNRKISAYMRKGQCESALSVFNGMRRRSTVTYNAMISGYLSNNKFDCARKVFEKM 117

Query: 278 PEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQH--TFSSCLCACASIVSLKH 335
           P+++ +SW  +++GY +NG    A  LF +M      P +   ++++ L   A    ++ 
Sbjct: 118 PDRDLISWNVMLSGYVKNGNLSAARALFNQM------PEKDVVSWNAMLSGFAQNGFVEE 171

Query: 336 GKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALT 395
            +++   ++      N I  + L+  Y + G + D R++FD   + E  + WN ++    
Sbjct: 172 ARKIFDQML----VKNEISWNGLLSAYVQNGRIEDARRLFDSKMDWE-IVSWNCLMGGYV 226

Query: 396 QHGYDEQAIRLFHDM-VRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPN 454
           +    + A  LF  M VR     DKI+  +++     +GL+ E    FE +      I +
Sbjct: 227 RKKRLDDARSLFDRMPVR-----DKISWNIMITGYAQNGLLSEARRLFEELP-----IRD 276

Query: 455 QEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLI 514
                 ++    Q G  D+     E+MP E +   WNA+         I+  R++ DQ+ 
Sbjct: 277 VFAWTAMVSGFVQNGMLDEATRIFEEMP-EKNEVSWNAMIAGYVQSQQIEKARELFDQMP 335

Query: 515 DQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISW 560
            +N  S  T   + + Y+  G    +++ + L +E    +   ISW
Sbjct: 336 SRNTSSWNT---MVTGYAQCGN---IDQAKILFDE--MPQRDCISW 373



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 77/300 (25%), Positives = 135/300 (45%), Gaps = 52/300 (17%)

Query: 23  SFLSLIS----KGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHL 78
           S+ ++IS     GQ  EA+     + + G  L    LA  L  CAE  +L+LGK+  LH 
Sbjct: 372 SWAAMISGYAQSGQSEEALHLFIKMKRDGGILNRSALACALSSCAEIAALELGKQ--LHG 429

Query: 79  KLTQRKTPTTFLS-NHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKH 137
           +L +    T +++ N L++MY KCGS  +A  VF+ I  K++ S+N M++GYA  G  K 
Sbjct: 430 RLVKAGFQTGYIAGNALLAMYGKCGSIEEAFDVFEDITEKDIVSWNTMIAGYARHGFGKE 489

Query: 138 ARNLFDNMA---ERDVVSWNTMIIGYAKSGAVEEGLKFYKVL-RRFSISCNEFSFAGILT 193
           A  LF++M    + D V+   ++   + +G V++G++++  + + + I+ N   +     
Sbjct: 490 ALALFESMKMTIKPDDVTLVGVLSACSHTGLVDKGMEYFNSMYQNYGITANAKHY----- 544

Query: 194 ICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETD-ARDVL 252
                                         + ++D   + G L +A  L        D  
Sbjct: 545 ------------------------------TCMIDLLGRAGRLDEALNLMKSMPFYPDAA 574

Query: 253 TWTTMVSGYAKLGDME----SASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRM 308
           TW  ++      GD E    +A K+F EM   N   +  L   Y  +G  ++  E+ ++M
Sbjct: 575 TWGALLGASRIHGDTELGEKAAEKVF-EMEPDNSGMYVLLSNLYAASGRWREVREMRSKM 633


>gi|356544545|ref|XP_003540710.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g13600-like [Glycine max]
          Length = 705

 Score =  359 bits (921), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 191/587 (32%), Positives = 330/587 (56%), Gaps = 41/587 (6%)

Query: 16  PNNCLIQSFLSLISK-GQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRV 74
           P+ C   + +S  ++  +  EA+     +      L   +    L  CA    L +G ++
Sbjct: 114 PDQCSWNAMVSGFAQHDRFEEALRFFVDMHSEDFVLNEYSFGSALSACAGLTDLNMGIQI 173

Query: 75  HLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGM 134
           H  L    R     ++ + L+ MY KCG                               +
Sbjct: 174 HA-LISKSRYLLDVYMGSALVDMYSKCG-------------------------------V 201

Query: 135 MKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTI 194
           +  A+  FD MA R++VSWN++I  Y ++G   + L+ + ++    +  +E + A +++ 
Sbjct: 202 VACAQRAFDGMAVRNIVSWNSLITCYEQNGPAGKALEVFVMMMDNGVEPDEITLASVVSA 261

Query: 195 CVKLEELKLTRQVHGQVLVTG-FLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLT 253
           C     ++   Q+H +V+    + +++V+ +++VD YAKC  +++AR +FD    R+V++
Sbjct: 262 CASWSAIREGLQIHARVVKRDKYRNDLVLGNALVDMYAKCRRVNEARLVFDRMPLRNVVS 321

Query: 254 WTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRI 313
            T+MV GYA+   +++A  +F+ M EKN VSW  LIAGYT+NG  ++A+ LF  +    I
Sbjct: 322 ETSMVCGYARAASVKAARLMFSNMMEKNVVSWNALIAGYTQNGENEEAVRLFLLLKRESI 381

Query: 314 RPNQHTFSSCLCACASIVSLKHGKQVH------GFLIRTNFRSNTIVMSSLIDMYSKCGC 367
            P  +TF + L ACA++  LK G+Q H      GF  ++   S+  V +SLIDMY KCG 
Sbjct: 382 WPTHYTFGNLLNACANLADLKLGRQAHTQILKHGFWFQSGEESDIFVGNSLIDMYMKCGM 441

Query: 368 LNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILN 427
           + DG  VF+    ++  + WN MI    Q+GY   A+ +F  M+ S  KPD +T+  +L+
Sbjct: 442 VEDGCLVFERMVERD-VVSWNAMIVGYAQNGYGTNALEIFRKMLVSGQKPDHVTMIGVLS 500

Query: 428 ACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDS 487
           AC+H+GLV+EG  YF SM  +LG+ P ++H  C+++LL +AGC D+  + ++ MP + D+
Sbjct: 501 ACSHAGLVEEGRRYFHSMRTELGLAPMKDHFTCMVDLLGRAGCLDEANDLIQTMPMQPDN 560

Query: 488 YLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLI 547
            +W +L   C++HGNI++G+ V ++L++ +P +S  + LLS++Y+ LG+ + V +VR+ +
Sbjct: 561 VVWGSLLAACKVHGNIELGKYVAEKLMEIDPLNSGPYVLLSNMYAELGRWKDVVRVRKQM 620

Query: 548 NERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQM 594
            +R   K+   SWIEI+++VH F V D  HP++  ++ VL+ L  QM
Sbjct: 621 RQRGVIKQPGCSWIEIQSRVHVFMVKDKRHPLKKDIHLVLKFLTEQM 667



 Score =  231 bits (589), Expect = 9e-58,   Method: Compositional matrix adjust.
 Identities = 147/486 (30%), Positives = 237/486 (48%), Gaps = 81/486 (16%)

Query: 50  LPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARK 109
           L +   A +L  C  SKS    +R+H  +  TQ  +   F+ N L+  Y KCG   DARK
Sbjct: 17  LDSSPFAKLLDSCVRSKSGIDARRIHARIIKTQFSS-EIFIQNRLVDAYGKCGYFEDARK 75

Query: 110 VFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEG 169
           VFD++P +N FSYN +LS     G +  A N+F +M E D  SWN M+ G+A+    EE 
Sbjct: 76  VFDRMPQRNTFSYNAVLSVLTKFGKLDEAFNVFKSMPEPDQCSWNAMVSGFAQHDRFEEA 135

Query: 170 LKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDA 229
           L+F+  +       NE+SF   L+ C  L +L +  Q+H  +  + +L +V + S++VD 
Sbjct: 136 LRFFVDMHSEDFVLNEYSFGSALSACAGLTDLNMGIQIHALISKSRYLLDVYMGSALVDM 195

Query: 230 YAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLI 289
           Y+KCG ++ A+R FD    R++++W                                +LI
Sbjct: 196 YSKCGVVACAQRAFDGMAVRNIVSW-------------------------------NSLI 224

Query: 290 AGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLI-RTNF 348
             Y +NG   KALE+F  MM   + P++ T +S + ACAS  +++ G Q+H  ++ R  +
Sbjct: 225 TCYEQNGPAGKALEVFVMMMDNGVEPDEITLASVVSACASWSAIREGLQIHARVVKRDKY 284

Query: 349 RSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNK----ENSML------------------ 386
           R++ ++ ++L+DMY+KC  +N+ R VFD    +    E SM+                  
Sbjct: 285 RNDLVLGNALVDMYAKCRRVNEARLVFDRMPLRNVVSETSMVCGYARAASVKAARLMFSN 344

Query: 387 --------WNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNAC--------- 429
                   WN +I+  TQ+G +E+A+RLF  + R S+ P   T   +LNAC         
Sbjct: 345 MMEKNVVSWNALIAGYTQNGENEEAVRLFLLLKRESIWPTHYTFGNLLNACANLADLKLG 404

Query: 430 --THSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDS 487
              H+ +++ G  +F+S       + N      LI++  + G  +      E+M  E D 
Sbjct: 405 RQAHTQILKHGF-WFQSGEESDIFVGNS-----LIDMYMKCGMVEDGCLVFERM-VERDV 457

Query: 488 YLWNAL 493
             WNA+
Sbjct: 458 VSWNAM 463


>gi|449439555|ref|XP_004137551.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Cucumis sativus]
          Length = 776

 Score =  358 bits (918), Expect = 6e-96,   Method: Compositional matrix adjust.
 Identities = 181/531 (34%), Positives = 320/531 (60%), Gaps = 27/531 (5%)

Query: 92  NHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVV 151
           N ++S + + G   +ARK+FD++ VKN  S+N +LS Y   G ++ AR LFD+  + ++V
Sbjct: 157 NAMLSGFAQNGFVEEARKIFDQMLVKNEISWNGLLSAYVQNGRIEDARRLFDSKMDWEIV 216

Query: 152 SWNTMIIGYAKSGAVEEGLK-FYKVLRRFSISCN----EFSFAGILTICVKL-EELKLTR 205
           SWN ++ GY +   +++    F ++  R  IS N     ++  G+L+   +L EEL +  
Sbjct: 217 SWNCLMGGYVRKKRLDDARSLFDRMPVRDKISWNIMITGYAQNGLLSEARRLFEELPIRD 276

Query: 206 QVHGQVLVTGFLSNVVIS-----------------SSIVDAYAKCGELSDARRLFDETDA 248
                 +V+GF+ N ++                  ++++  Y +  ++  AR LFD+  +
Sbjct: 277 VFAWTAMVSGFVQNGMLDEATRIFEEMPEKNEVSWNAMIAGYVQSQQIEKARELFDQMPS 336

Query: 249 RDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRM 308
           R+  +W TMV+GYA+ G+++ A  LF+EMP+++ +SW  +I+GY ++G  ++AL LF +M
Sbjct: 337 RNTSSWNTMVTGYAQCGNIDQAKILFDEMPQRDCISWAAMISGYAQSGQSEEALHLFIKM 396

Query: 309 MILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCL 368
                  N+   +  L +CA I +L+ GKQ+HG L++  F++  I  ++L+ MY KCG +
Sbjct: 397 KRDGGILNRSALACALSSCAEIAALELGKQLHGRLVKAGFQTGYIAGNALLAMYGKCGSI 456

Query: 369 NDGRQVF-DLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILN 427
            +   VF D+T+  ++ + WNTMI+   +HG+ ++A+ LF  M + ++KPD +TL  +L+
Sbjct: 457 EEAFDVFEDITE--KDIVSWNTMIAGYARHGFGKEALALFESM-KMTIKPDDVTLVGVLS 513

Query: 428 ACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDS 487
           AC+H+G V +G+ YF SM  + GI  N +H+ C+I+LL +AG  D+ +N ++ MP+  D+
Sbjct: 514 ACSHTGFVDKGMEYFNSMYQNYGITANAKHYTCMIDLLGRAGRLDEALNLMKSMPFYPDA 573

Query: 488 YLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLI 547
             W AL G  RIHG+ ++G K  +++ +  P +S  + LLS++Y+A G+ R V ++R  +
Sbjct: 574 ATWGALLGASRIHGDTELGEKAAEKVFEMEPDNSGMYVLLSNLYAASGRWREVREMRSKM 633

Query: 548 NERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQMGEDA 598
            ++  KK    SW+EI+NK H F+V D  HP  + +Y+ LE+L  ++ +D 
Sbjct: 634 RDKGVKKVPGYSWVEIQNKTHIFTVGDCSHPEAERIYAYLEELDLELKKDG 684



 Score =  182 bits (462), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 132/447 (29%), Positives = 211/447 (47%), Gaps = 75/447 (16%)

Query: 82  QRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNL 141
           +R++  T+  N +IS Y        ARKVF+K+P ++L S+N MLSGY   G +  AR L
Sbjct: 87  RRRSTVTY--NAMISGYLSNNKFDCARKVFEKMPDRDLISWNVMLSGYVKNGNLSAARAL 144

Query: 142 FDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEEL 201
           F+ M E+DVVSWN M+ G+A++G VEE  K +  +    +  NE S+ G+L+  V+   +
Sbjct: 145 FNQMPEKDVVSWNAMLSGFAQNGFVEEARKIFDQM----LVKNEISWNGLLSAYVQNGRI 200

Query: 202 KLTRQ----------VHGQVLVTGFLSNVVISSS-----------------IVDAYAKCG 234
           +  R+          V    L+ G++    +  +                 ++  YA+ G
Sbjct: 201 EDARRLFDSKMDWEIVSWNCLMGGYVRKKRLDDARSLFDRMPVRDKISWNIMITGYAQNG 260

Query: 235 ELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTR 294
            LS+ARRLF+E   RDV  WT MVSG+ + G ++ A+++F EMPEKN VSW  +IAGY +
Sbjct: 261 LLSEARRLFEELPIRDVFAWTAMVSGFVQNGMLDEATRIFEEMPEKNEVSWNAMIAGYVQ 320

Query: 295 NGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIV 354
           +   +KA ELF +M      P+++T S                             NT+V
Sbjct: 321 SQQIEKARELFDQM------PSRNTSS----------------------------WNTMV 346

Query: 355 MSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSS 414
                  Y++CG ++  + +FD    ++  + W  MIS   Q G  E+A+ LF  M R  
Sbjct: 347 TG-----YAQCGNIDQAKILFDEMPQRD-CISWAAMISGYAQSGQSEEALHLFIKMKRDG 400

Query: 415 VKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQL 474
              ++  LA  L++C     ++ G      +    G          L+ +  + G  ++ 
Sbjct: 401 GILNRSALACALSSCAEIAALELGKQLHGRLVK-AGFQTGYIAGNALLAMYGKCGSIEEA 459

Query: 475 MNQLEKMPYEHDSYLWNALHGVCRIHG 501
            +  E +  E D   WN +      HG
Sbjct: 460 FDVFEDIT-EKDIVSWNTMIAGYARHG 485



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 117/435 (26%), Positives = 210/435 (48%), Gaps = 37/435 (8%)

Query: 92  NHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVV 151
           N  IS Y + G    A  VF+ +  ++  +YN M+SGY +      AR +F+ M +RD++
Sbjct: 64  NRKISAYMRKGQCESALSVFNGMRRRSTVTYNAMISGYLSNNKFDCARKVFEKMPDRDLI 123

Query: 152 SWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQV 211
           SWN M+ GY K+G +      +  +    +     S+  +L+   +   ++  R++  Q+
Sbjct: 124 SWNVMLSGYVKNGNLSAARALFNQMPEKDV----VSWNAMLSGFAQNGFVEEARKIFDQM 179

Query: 212 LVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESAS 271
           LV     N +  + ++ AY + G + DARRLFD     ++++W  ++ GY +   ++ A 
Sbjct: 180 LV----KNEISWNGLLSAYVQNGRIEDARRLFDSKMDWEIVSWNCLMGGYVRKKRLDDAR 235

Query: 272 KLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIV 331
            LF+ MP ++ +SW  +I GY +NGL  +A  LF  +      P +  F     A  ++V
Sbjct: 236 SLFDRMPVRDKISWNIMITGYAQNGLLSEARRLFEEL------PIRDVF-----AWTAMV 284

Query: 332 S--LKHGKQVHGFLIRTNF-RSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWN 388
           S  +++G       I       N +  +++I  Y +   +   R++FD   ++ N+  WN
Sbjct: 285 SGFVQNGMLDEATRIFEEMPEKNEVSWNAMIAGYVQSQQIEKARELFDQMPSR-NTSSWN 343

Query: 389 TMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHD 448
           TM++   Q G  +QA  LF +M +     D I+ A +++    SG  +E L  F  M  D
Sbjct: 344 TMVTGYAQCGNIDQAKILFDEMPQR----DCISWAAMISGYAQSGQSEEALHLFIKMKRD 399

Query: 449 LGIIPNQEHHACLIELLAQAGC---SDQLMNQLEKMPYEHDSYLWNAL---HGVCRIHGN 502
            GI+ N+   AC +   A+        QL  +L K  ++      NAL   +G C   G+
Sbjct: 400 GGIL-NRSALACALSSCAEIAALELGKQLHGRLVKAGFQTGYIAGNALLAMYGKC---GS 455

Query: 503 IDMGRKVVDQLIDQN 517
           I+    V + + +++
Sbjct: 456 IEEAFDVFEDITEKD 470



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 88/378 (23%), Positives = 169/378 (44%), Gaps = 60/378 (15%)

Query: 137 HARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICV 196
            ++N    + + D+V WN  I  Y + G  E  L  +  +RR S                
Sbjct: 47  ESKNSDSTIVDSDIVKWNRKISAYMRKGQCESALSVFNGMRRRST--------------- 91

Query: 197 KLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTT 256
                     V    +++G+LSN               +   AR++F++   RD+++W  
Sbjct: 92  ----------VTYNAMISGYLSN--------------NKFDCARKVFEKMPDRDLISWNV 127

Query: 257 MVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPN 316
           M+SGY K G++ +A  LFN+MPEK+ VSW  +++G+ +NG  ++A ++F +M++     N
Sbjct: 128 MLSGYVKNGNLSAARALFNQMPEKDVVSWNAMLSGFAQNGFVEEARKIFDQMLV----KN 183

Query: 317 QHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFD 376
           + +++  L A      ++  ++    L  +      +  + L+  Y +   L+D R +FD
Sbjct: 184 EISWNGLLSAYVQNGRIEDARR----LFDSKMDWEIVSWNCLMGGYVRKKRLDDARSLFD 239

Query: 377 LTDNKENSMLWNTMISALTQHGYDEQAIRLFHDM-VRSSVKPDKITLAVILNACTHSGLV 435
               ++  + WN MI+   Q+G   +A RLF ++ +R     D      +++    +G++
Sbjct: 240 RMPVRDK-ISWNIMITGYAQNGLLSEARRLFEELPIR-----DVFAWTAMVSGFVQNGML 293

Query: 436 QEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHG 495
            E    FE M        N+     +I    Q+   ++     ++MP  + S  WN +  
Sbjct: 294 DEATRIFEEMPE-----KNEVSWNAMIAGYVQSQQIEKARELFDQMPSRNTSS-WNTMVT 347

Query: 496 VCRIHGNIDMGRKVVDQL 513
                GNID  + + D++
Sbjct: 348 GYAQCGNIDQAKILFDEM 365



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 82/346 (23%), Positives = 157/346 (45%), Gaps = 33/346 (9%)

Query: 218 SNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEM 277
           S++V  +  + AY + G+   A  +F+    R  +T+  M+SGY      + A K+F +M
Sbjct: 58  SDIVKWNRKISAYMRKGQCESALSVFNGMRRRSTVTYNAMISGYLSNNKFDCARKVFEKM 117

Query: 278 PEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQH--TFSSCLCACASIVSLKH 335
           P+++ +SW  +++GY +NG    A  LF +M      P +   ++++ L   A    ++ 
Sbjct: 118 PDRDLISWNVMLSGYVKNGNLSAARALFNQM------PEKDVVSWNAMLSGFAQNGFVEE 171

Query: 336 GKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALT 395
            +++   ++      N I  + L+  Y + G + D R++FD   + E  + WN ++    
Sbjct: 172 ARKIFDQML----VKNEISWNGLLSAYVQNGRIEDARRLFDSKMDWE-IVSWNCLMGGYV 226

Query: 396 QHGYDEQAIRLFHDM-VRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPN 454
           +    + A  LF  M VR     DKI+  +++     +GL+ E    FE +      I +
Sbjct: 227 RKKRLDDARSLFDRMPVR-----DKISWNIMITGYAQNGLLSEARRLFEELP-----IRD 276

Query: 455 QEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLI 514
                 ++    Q G  D+     E+MP E +   WNA+         I+  R++ DQ+ 
Sbjct: 277 VFAWTAMVSGFVQNGMLDEATRIFEEMP-EKNEVSWNAMIAGYVQSQQIEKARELFDQMP 335

Query: 515 DQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISW 560
            +N  S  T   + + Y+  G    +++ + L +E    +   ISW
Sbjct: 336 SRNTSSWNT---MVTGYAQCGN---IDQAKILFDE--MPQRDCISW 373



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 76/297 (25%), Positives = 128/297 (43%), Gaps = 46/297 (15%)

Query: 23  SFLSLIS----KGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHL 78
           S+ ++IS     GQ  EA+     + + G  L    LA  L  CAE  +L+LGK+  LH 
Sbjct: 372 SWAAMISGYAQSGQSEEALHLFIKMKRDGGILNRSALACALSSCAEIAALELGKQ--LHG 429

Query: 79  KLTQRKTPTTFLS-NHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKH 137
           +L +    T +++ N L++MY KCGS  +A  VF+ I  K++ S+N M++GYA  G  K 
Sbjct: 430 RLVKAGFQTGYIAGNALLAMYGKCGSIEEAFDVFEDITEKDIVSWNTMIAGYARHGFGKE 489

Query: 138 ARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVK 197
           A  LF++M                                + +I  ++ +  G+L+ C  
Sbjct: 490 ALALFESM--------------------------------KMTIKPDDVTLVGVLSACSH 517

Query: 198 LEELKLTRQVHGQVLVT-GFLSNVVISSSIVDAYAKCGELSDARRLFDETD-ARDVLTWT 255
              +    +    +    G  +N    + ++D   + G L +A  L        D  TW 
Sbjct: 518 TGFVDKGMEYFNSMYQNYGITANAKHYTCMIDLLGRAGRLDEALNLMKSMPFYPDAATWG 577

Query: 256 TMVSGYAKLGDME----SASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRM 308
            ++      GD E    +A K+F EM   N   +  L   Y  +G  ++  E+ ++M
Sbjct: 578 ALLGASRIHGDTELGEKAAEKVF-EMEPDNSGMYVLLSNLYAASGRWREVREMRSKM 633


>gi|356519952|ref|XP_003528632.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Glycine max]
          Length = 693

 Score =  357 bits (916), Expect = 9e-96,   Method: Compositional matrix adjust.
 Identities = 194/596 (32%), Positives = 326/596 (54%), Gaps = 42/596 (7%)

Query: 30  KGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTF 89
           K +L +AI   DLL   G+    +    +L  CA +      KR+  H++L   +   +F
Sbjct: 4   KQKLHQAI---DLLYSHGLASFDDYTRLVLH-CARANDFIQAKRLQSHMELNLFQPKDSF 59

Query: 90  LSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERD 149
           + N L+ +Y K G   DA+ VFD +  ++++S+N +LS YA +GM+++   +FD M  RD
Sbjct: 60  IHNQLLHLYAKFGKLSDAQNVFDNMTKRDVYSWNTLLSAYAKMGMVENLHVVFDQMPYRD 119

Query: 150 VVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHG 209
            VS+NT+I  +A +G   + LK    ++       ++S    L  C +L +L+  +Q+HG
Sbjct: 120 SVSYNTLIACFASNGHSGKALKVLVRMQEDGFQPTQYSHVNALQACSQLLDLRHGKQIHG 179

Query: 210 QVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMES 269
           +++V     N  + +++ D YAKCG++  AR LFD    ++V++W  M+SGY K+G+   
Sbjct: 180 RIVVADLGENTFVRNAMTDMYAKCGDIDKARLLFDGMIDKNVVSWNLMISGYVKMGNPNE 239

Query: 270 ASKLFNEM-----------------------------------PEKNPVSWTTLIAGYTR 294
              LFNEM                                   P+K+ + WTT+I GY +
Sbjct: 240 CIHLFNEMQLSGLKPDLVTVSNVLNAYFRCGRVDDARNLFIKLPKKDEICWTTMIVGYAQ 299

Query: 295 NGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIV 354
           NG  + A  LF  M+   ++P+ +T SS + +CA + SL HG+ VHG ++     ++ +V
Sbjct: 300 NGREEDAWMLFGDMLRRNVKPDSYTISSMVSSCAKLASLYHGQVVHGKVVVMGIDNSMLV 359

Query: 355 MSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSS 414
            S+L+DMY KCG   D R +F+ T    N + WN MI    Q+G   +A+ L+  M + +
Sbjct: 360 SSALVDMYCKCGVTLDARVIFE-TMPIRNVITWNAMILGYAQNGQVLEALTLYERMQQEN 418

Query: 415 VKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQL 474
            KPD IT   +L+AC ++ +V+EG  YF+S++ + GI P  +H+AC+I LL ++G  D+ 
Sbjct: 419 FKPDNITFVGVLSACINADMVKEGQKYFDSIS-EHGIAPTLDHYACMITLLGRSGSVDKA 477

Query: 475 MNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSAL 534
           ++ ++ MP+E +  +W+ L  VC   G++         L + +P+++  + +LS++Y+A 
Sbjct: 478 VDLIQGMPHEPNYRIWSTLLSVC-AKGDLKNAELAASHLFELDPRNAGPYIMLSNLYAAC 536

Query: 535 GKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQL 590
           G+ + V  VR L+ E+  KK  A SW+E+ NKVH F   D  HP    +Y  L +L
Sbjct: 537 GRWKDVAVVRSLMKEKNAKKFAAYSWVEVGNKVHRFVSEDHYHPEVGKIYGELNRL 592



 Score =  152 bits (384), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 105/420 (25%), Positives = 187/420 (44%), Gaps = 70/420 (16%)

Query: 12  RKNLPNNCLIQSFLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLG 71
           R ++  N LI  F    S G   +A+  L  + + G +    +    LQ C++   L+ G
Sbjct: 118 RDSVSYNTLIACF---ASNGHSGKALKVLVRMQEDGFQPTQYSHVNALQACSQLLDLRHG 174

Query: 72  KRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYAN 131
           K++H  + +       TF+ N +  MY KCG    AR +FD +  KN+ S+N M+SGY  
Sbjct: 175 KQIHGRIVVADLGE-NTFVRNAMTDMYAKCGDIDKARLLFDGMIDKNVVSWNLMISGYVK 233

Query: 132 L-----------------------------------GMMKHARNLFDNMAERDVVSWNTM 156
           +                                   G +  ARNLF  + ++D + W TM
Sbjct: 234 MGNPNECIHLFNEMQLSGLKPDLVTVSNVLNAYFRCGRVDDARNLFIKLPKKDEICWTTM 293

Query: 157 IIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGF 216
           I+GYA++G  E+    +  + R ++  + ++ + +++ C KL  L   + VHG+V+V G 
Sbjct: 294 IVGYAQNGREEDAWMLFGDMLRRNVKPDSYTISSMVSSCAKLASLYHGQVVHGKVVVMGI 353

Query: 217 LSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNE 276
            +++++SS++VD Y KCG   DAR +F+    R+V+TW  M+ GYA+             
Sbjct: 354 DNSMLVSSALVDMYCKCGVTLDARVIFETMPIRNVITWNAMILGYAQ------------- 400

Query: 277 MPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHG 336
                             NG   +AL L+ RM     +P+  TF   L AC +   +K G
Sbjct: 401 ------------------NGQVLEALTLYERMQQENFKPDNITFVGVLSACINADMVKEG 442

Query: 337 KQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQ 396
           ++    +            + +I +  + G ++    +     ++ N  +W+T++S   +
Sbjct: 443 QKYFDSISEHGIAPTLDHYACMITLLGRSGSVDKAVDLIQGMPHEPNYRIWSTLLSVCAK 502


>gi|297802258|ref|XP_002869013.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297314849|gb|EFH45272.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 693

 Score =  357 bits (916), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 186/567 (32%), Positives = 321/567 (56%), Gaps = 38/567 (6%)

Query: 33  LSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSN 92
           L EA+     L  R  + PA T   ++Q C+++++L+ GK+VH H++ T    P   + N
Sbjct: 72  LREAVQ----LLGRAKKPPASTYCNLIQVCSQTRALEEGKKVHEHIR-TSGFVPGIVIWN 126

Query: 93  HLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVS 152
            ++ MY KCGS VDARKVFD++P +++ S+N M++GYA +G+++ ARNLFD M ERD  S
Sbjct: 127 RILGMYAKCGSLVDARKVFDEMPERDVCSWNVMVNGYAEVGLLEEARNLFDEMPERDSYS 186

Query: 153 WNTMIIGYAKSGAVEEGLKFYKVLRRFSIS-CNEFSFAGILTICVKLEELKLTRQVHGQV 211
           W  M+ GY K    EE L  Y +++R   S  N F+ +  +     ++ ++  +++HG +
Sbjct: 187 WTAMVTGYVKKDQPEEALVLYSLMQRVPNSKPNIFTVSSAVAAAAAIKCIRRGKEIHGHI 246

Query: 212 LVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESAS 271
           +  G  S+ V+                               W++++  Y K G ++ A 
Sbjct: 247 VRAGLDSDEVL-------------------------------WSSLMDMYGKCGCIDEAR 275

Query: 272 KLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIV 331
            +F+++ +K+ VSWT++I  Y ++   ++   LF+ ++    RPN++TFS  L ACA + 
Sbjct: 276 NIFDKIIDKDVVSWTSMIDRYFKSSRWREGFSLFSELIGSCERPNEYTFSGVLNACADLT 335

Query: 332 SLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMI 391
           + + G+QVHG++ R  F   +   SSLIDMY+KCG +   R V D    K + +   ++I
Sbjct: 336 TEELGRQVHGYMTRVGFDPYSFASSSLIDMYTKCGNIESARHVVDGCP-KPDLVSLTSLI 394

Query: 392 SALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGI 451
               Q+G  ++A++ F  +++S  KPD +T   +L+ACTH+GLV++GL +F S+T    +
Sbjct: 395 GGYAQNGKPDEALKYFDLLLKSGTKPDHVTFVNVLSACTHAGLVEKGLEFFYSITEKHDL 454

Query: 452 IPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVD 511
               +H+ CL++LLA++G  +QL + L +MP +   +LW ++ G C  +GNID+  +   
Sbjct: 455 THTSDHYTCLVDLLARSGRFEQLKSVLSEMPMKPSKFLWASVLGGCSTYGNIDLAEEAAQ 514

Query: 512 QLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFS 571
           +L    P++  T+  +++IY+A GK     K+R+ + E    K+   SW EI+ K H F 
Sbjct: 515 ELFKIEPENPVTYVTMANIYAAAGKWEEEGKMRKRMQEIGITKKPGSSWTEIKRKRHVFI 574

Query: 572 VSDSLHPMRDVLYSVLEQLAGQMGEDA 598
            +D+ HPM + +   L +L  +M E+ 
Sbjct: 575 AADTSHPMYNQIIEFLGELRKKMKEEG 601



 Score = 75.1 bits (183), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 54/226 (23%), Positives = 101/226 (44%), Gaps = 14/226 (6%)

Query: 298 GQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSS 357
           GQK L    +++    +P   T+ + +  C+   +L+ GK+VH  +  + F    ++ + 
Sbjct: 68  GQKLLREAVQLLGRAKKPPASTYCNLIQVCSQTRALEEGKKVHEHIRTSGFVPGIVIWNR 127

Query: 358 LIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKP 417
           ++ MY+KCG L D R+VFD    + +   WN M++   + G  E+A  LF +M       
Sbjct: 128 ILGMYAKCGSLVDARKVFDEMPER-DVCSWNVMVNGYAEVGLLEEARNLFDEMPER---- 182

Query: 418 DKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGC---SDQL 474
           D  +   ++         +E L  +  M       PN    +  +   A   C     ++
Sbjct: 183 DSYSWTAMVTGYVKKDQPEEALVLYSLMQRVPNSKPNIFTVSSAVAAAAAIKCIRRGKEI 242

Query: 475 MNQLEKMPYEHDSYLWNAL---HGVCRIHGNIDMGRKVVDQLIDQN 517
              + +   + D  LW++L   +G C   G ID  R + D++ID++
Sbjct: 243 HGHIVRAGLDSDEVLWSSLMDMYGKC---GCIDEARNIFDKIIDKD 285



 Score = 40.4 bits (93), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 38/159 (23%), Positives = 72/159 (45%), Gaps = 10/159 (6%)

Query: 31  GQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFL 90
           G+  EA+   DLL + G +    T   +L  C  +  ++ G  +     +T+ K   T  
Sbjct: 401 GKPDEALKYFDLLLKSGTKPDHVTFVNVLSACTHAGLVEKG--LEFFYSITE-KHDLTHT 457

Query: 91  SNH---LISMYFKCGSDVDARKVFDKIPVK-NLFSYNNMLSG---YANLGMMKHARNLFD 143
           S+H   L+ +  + G     + V  ++P+K + F + ++L G   Y N+ + + A     
Sbjct: 458 SDHYTCLVDLLARSGRFEQLKSVLSEMPMKPSKFLWASVLGGCSTYGNIDLAEEAAQELF 517

Query: 144 NMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSIS 182
            +   + V++ TM   YA +G  EE  K  K ++   I+
Sbjct: 518 KIEPENPVTYVTMANIYAAAGKWEEEGKMRKRMQEIGIT 556


>gi|255567371|ref|XP_002524665.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223536026|gb|EEF37684.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 2000

 Score =  356 bits (914), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 195/568 (34%), Positives = 315/568 (55%), Gaps = 3/568 (0%)

Query: 28  ISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPT 87
           +  G   EA+     L +  ++    T   +++ CA      LG  V L L +       
Sbjct: 160 VQNGFSVEAMKLFIKLLESEVKPNKVTFTSVVRACANLGDFGLGMSV-LGLIVKTGYEHD 218

Query: 88  TFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAE 147
             +SN LI++  + G    AR+VFD++  K++ S+  +L  Y  +  +  AR +FD M +
Sbjct: 219 LAVSNSLITLCLRMGEIHLAREVFDRMEEKDVVSWTAILDLYVEMDELGEARRIFDEMPQ 278

Query: 148 RDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQV 207
           R+ VSW+ MI  Y +SG  EE L+ +  + +     N   F+ IL+    +E L+    +
Sbjct: 279 RNEVSWSAMIARYCQSGYPEESLRLFCRMIQEGFKPNISCFSSILSALASVEALQAGMNI 338

Query: 208 HGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDM 267
           HG V   GF  +V +SSS++D Y KCGE  D R LFD    +++++W  MV GY+  G M
Sbjct: 339 HGHVTKIGFEKDVFVSSSLIDMYCKCGETKDGRFLFDTILEKNMVSWNAMVGGYSLNGHM 398

Query: 268 ESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCAC 327
           E A  LFN MP +N VSW+ +IAG+       +  E+F  M++L   PN+ TFSS LCAC
Sbjct: 399 EEAKYLFNIMPVRNNVSWSAIIAGHLDCEQFDEMFEVFNEMILLGEIPNKSTFSSLLCAC 458

Query: 328 ASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLW 387
           AS  SL  GK +HG +++   + +T V ++L DMY+K G +   ++VF+    K+N + W
Sbjct: 459 ASTASLDKGKNLHGKIVKLGIQCDTYVGTALTDMYAKSGDIESSKKVFNRMP-KKNEVSW 517

Query: 388 NTMISALTQHGYDEQAIRLFHDMVR-SSVKPDKITLAVILNACTHSGLVQEGLTYFESMT 446
             MI  L + G  E+++ LF +M + SS+ P+++    +L AC+HSGLV +GL YF SM 
Sbjct: 518 TAMIQGLAESGLAEESLTLFEEMEKTSSIAPNEVMFLAVLFACSHSGLVDKGLWYFNSME 577

Query: 447 HDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMG 506
              G+ P   H  C++++L++AG   +    +  MP++ ++  W AL   C+ + N ++ 
Sbjct: 578 AVYGLKPKGRHFTCVVDMLSRAGRLFEAEEFIYSMPFQPETNAWAALLSGCKTYKNEELA 637

Query: 507 RKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENK 566
            +V  +L +   ++ A + LLS+IY++ G+ R V KVR+L+  +  KK    SW+EI ++
Sbjct: 638 ERVAGKLWEMAEKNCAGYVLLSNIYASAGRWRDVLKVRKLMKAKGLKKSGGCSWVEIRDR 697

Query: 567 VHAFSVSDSLHPMRDVLYSVLEQLAGQM 594
           VH+F   D  H     +Y +LE L  +M
Sbjct: 698 VHSFYSEDGAHSQSAEIYEILELLGYEM 725



 Score =  229 bits (585), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 140/464 (30%), Positives = 249/464 (53%), Gaps = 17/464 (3%)

Query: 92  NHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVV 151
           N +IS   + G+  +ARK+FD++P  N  S+  ++SG+   G ++ +   F+    ++VV
Sbjct: 91  NCMISANVQRGNLDEARKLFDEMPQTNEISWTALISGFMKYGRVRESMWYFERNPFQNVV 150

Query: 152 SWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQV 211
           SW   I GY ++G   E +K +  L    +  N+ +F  ++  C  L +  L   V G +
Sbjct: 151 SWTAAISGYVQNGFSVEAMKLFIKLLESEVKPNKVTFTSVVRACANLGDFGLGMSVLGLI 210

Query: 212 LVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESAS 271
           + TG+  ++ +S+S++    + GE+  AR +FD  + +DV++WT ++  Y ++ ++  A 
Sbjct: 211 VKTGYEHDLAVSNSLITLCLRMGEIHLAREVFDRMEEKDVVSWTAILDLYVEMDELGEAR 270

Query: 272 KLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIV 331
           ++F+EMP++N VSW+ +IA Y ++G  +++L LF RM+    +PN   FSS L A AS+ 
Sbjct: 271 RIFDEMPQRNEVSWSAMIARYCQSGYPEESLRLFCRMIQEGFKPNISCFSSILSALASVE 330

Query: 332 SLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMI 391
           +L+ G  +HG + +  F  +  V SSLIDMY KCG   DGR +FD T  ++N + WN M+
Sbjct: 331 ALQAGMNIHGHVTKIGFEKDVFVSSSLIDMYCKCGETKDGRFLFD-TILEKNMVSWNAMV 389

Query: 392 SALTQHGYDEQAIRLFHDM-VRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLG 450
              + +G+ E+A  LF+ M VR++V     + + I+          E    F  M   LG
Sbjct: 390 GGYSLNGHMEEAKYLFNIMPVRNNV-----SWSAIIAGHLDCEQFDEMFEVFNEMIL-LG 443

Query: 451 IIPNQEHHACLIELLAQAGCSDQ---LMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGR 507
            IPN+   + L+   A     D+   L  ++ K+  + D+Y+  AL  +    G+I+  +
Sbjct: 444 EIPNKSTFSSLLCACASTASLDKGKNLHGKIVKLGIQCDTYVGTALTDMYAKSGDIESSK 503

Query: 508 KVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQ 551
           KV +++  +N  S       +++   L +  L E+   L  E +
Sbjct: 504 KVFNRMPKKNEVS------WTAMIQGLAESGLAEESLTLFEEME 541



 Score =  138 bits (347), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 85/323 (26%), Positives = 162/323 (50%), Gaps = 34/323 (10%)

Query: 215 GFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLF 274
           GF  ++V+ + ++ A  + G L +AR+LFDE    + ++WT ++SG+ K G +  +   F
Sbjct: 84  GF--DLVVHNCMISANVQRGNLDEARKLFDEMPQTNEISWTALISGFMKYGRVRESMWYF 141

Query: 275 NEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLK 334
              P +N VSWT  I+GY +NG   +A++LF +++   ++PN+ TF+S + ACA++    
Sbjct: 142 ERNPFQNVVSWTAAISGYVQNGFSVEAMKLFIKLLESEVKPNKVTFTSVVRACANLGDFG 201

Query: 335 HGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKE------------ 382
            G  V G +++T +  +  V +SLI +  + G ++  R+VFD  + K+            
Sbjct: 202 LGMSVLGLIVKTGYEHDLAVSNSLITLCLRMGEIHLAREVFDRMEEKDVVSWTAILDLYV 261

Query: 383 ------------------NSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAV 424
                             N + W+ MI+   Q GY E+++RLF  M++   KP+    + 
Sbjct: 262 EMDELGEARRIFDEMPQRNEVSWSAMIARYCQSGYPEESLRLFCRMIQEGFKPNISCFSS 321

Query: 425 ILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYE 484
           IL+A      +Q G+     +T  +G   +    + LI++  + G +       + +  E
Sbjct: 322 ILSALASVEALQAGMNIHGHVTK-IGFEKDVFVSSSLIDMYCKCGETKDGRFLFDTI-LE 379

Query: 485 HDSYLWNALHGVCRIHGNIDMGR 507
            +   WNA+ G   ++G+++  +
Sbjct: 380 KNMVSWNAMVGGYSLNGHMEEAK 402


>gi|15235472|ref|NP_195434.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75097747|sp|O23169.1|PP353_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g37170
 gi|2464864|emb|CAB16758.1| putative protein [Arabidopsis thaliana]
 gi|7270666|emb|CAB80383.1| putative protein [Arabidopsis thaliana]
 gi|332661361|gb|AEE86761.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 691

 Score =  356 bits (914), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 185/567 (32%), Positives = 320/567 (56%), Gaps = 38/567 (6%)

Query: 33  LSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSN 92
           L EA+     L  R  + PA T   ++Q C+++++L+ GK+VH H++ T    P   + N
Sbjct: 70  LREAVQ----LLGRAKKPPASTYCNLIQVCSQTRALEEGKKVHEHIR-TSGFVPGIVIWN 124

Query: 93  HLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVS 152
            L+ MY KCGS VDARKVFD++P ++L S+N M++GYA +G+++ AR LFD M E+D  S
Sbjct: 125 RLLRMYAKCGSLVDARKVFDEMPNRDLCSWNVMVNGYAEVGLLEEARKLFDEMTEKDSYS 184

Query: 153 WNTMIIGYAKSGAVEEGLKFYKVLRRFSIS-CNEFSFAGILTICVKLEELKLTRQVHGQV 211
           W  M+ GY K    EE L  Y +++R   S  N F+ +  +     ++ ++  +++HG +
Sbjct: 185 WTAMVTGYVKKDQPEEALVLYSLMQRVPNSRPNIFTVSIAVAAAAAVKCIRRGKEIHGHI 244

Query: 212 LVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESAS 271
           +  G  S+ V+                               W++++  Y K G ++ A 
Sbjct: 245 VRAGLDSDEVL-------------------------------WSSLMDMYGKCGCIDEAR 273

Query: 272 KLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIV 331
            +F+++ EK+ VSWT++I  Y ++   ++   LF+ ++    RPN++TF+  L ACA + 
Sbjct: 274 NIFDKIVEKDVVSWTSMIDRYFKSSRWREGFSLFSELVGSCERPNEYTFAGVLNACADLT 333

Query: 332 SLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMI 391
           + + GKQVHG++ R  F   +   SSL+DMY+KCG +   + V D    K + + W ++I
Sbjct: 334 TEELGKQVHGYMTRVGFDPYSFASSSLVDMYTKCGNIESAKHVVDGCP-KPDLVSWTSLI 392

Query: 392 SALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGI 451
               Q+G  ++A++ F  +++S  KPD +T   +L+ACTH+GLV++GL +F S+T    +
Sbjct: 393 GGCAQNGQPDEALKYFDLLLKSGTKPDHVTFVNVLSACTHAGLVEKGLEFFYSITEKHRL 452

Query: 452 IPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVD 511
               +H+ CL++LLA++G  +QL + + +MP +   +LW ++ G C  +GNID+  +   
Sbjct: 453 SHTSDHYTCLVDLLARSGRFEQLKSVISEMPMKPSKFLWASVLGGCSTYGNIDLAEEAAQ 512

Query: 512 QLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFS 571
           +L    P++  T+  +++IY+A GK     K+R+ + E    K    SW EI+ K H F 
Sbjct: 513 ELFKIEPENPVTYVTMANIYAAAGKWEEEGKMRKRMQEIGVTKRPGSSWTEIKRKRHVFI 572

Query: 572 VSDSLHPMRDVLYSVLEQLAGQMGEDA 598
            +D+ HPM + +   L +L  +M E+ 
Sbjct: 573 AADTSHPMYNQIVEFLRELRKKMKEEG 599



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 54/226 (23%), Positives = 104/226 (46%), Gaps = 14/226 (6%)

Query: 298 GQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSS 357
           GQK L    +++    +P   T+ + +  C+   +L+ GK+VH  +  + F    ++ + 
Sbjct: 66  GQKLLREAVQLLGRAKKPPASTYCNLIQVCSQTRALEEGKKVHEHIRTSGFVPGIVIWNR 125

Query: 358 LIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKP 417
           L+ MY+KCG L D R+VFD   N++    WN M++   + G  E+A +LF +M     + 
Sbjct: 126 LLRMYAKCGSLVDARKVFDEMPNRDLCS-WNVMVNGYAEVGLLEEARKLFDEM----TEK 180

Query: 418 DKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGC---SDQL 474
           D  +   ++         +E L  +  M       PN    +  +   A   C     ++
Sbjct: 181 DSYSWTAMVTGYVKKDQPEEALVLYSLMQRVPNSRPNIFTVSIAVAAAAAVKCIRRGKEI 240

Query: 475 MNQLEKMPYEHDSYLWNAL---HGVCRIHGNIDMGRKVVDQLIDQN 517
              + +   + D  LW++L   +G C   G ID  R + D++++++
Sbjct: 241 HGHIVRAGLDSDEVLWSSLMDMYGKC---GCIDEARNIFDKIVEKD 283



 Score = 43.1 bits (100), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 39/168 (23%), Positives = 73/168 (43%), Gaps = 8/168 (4%)

Query: 23  SFLSLIS----KGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHL 78
           S+ SLI      GQ  EA+   DLL + G +    T   +L  C  +  ++ G      +
Sbjct: 387 SWTSLIGGCAQNGQPDEALKYFDLLLKSGTKPDHVTFVNVLSACTHAGLVEKGLEFFYSI 446

Query: 79  KLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVK-NLFSYNNMLSG---YANLGM 134
               R + T+     L+ +  + G     + V  ++P+K + F + ++L G   Y N+ +
Sbjct: 447 TEKHRLSHTSDHYTCLVDLLARSGRFEQLKSVISEMPMKPSKFLWASVLGGCSTYGNIDL 506

Query: 135 MKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSIS 182
            + A      +   + V++ TM   YA +G  EE  K  K ++   ++
Sbjct: 507 AEEAAQELFKIEPENPVTYVTMANIYAAAGKWEEEGKMRKRMQEIGVT 554


>gi|242048970|ref|XP_002462229.1| hypothetical protein SORBIDRAFT_02g022150 [Sorghum bicolor]
 gi|241925606|gb|EER98750.1| hypothetical protein SORBIDRAFT_02g022150 [Sorghum bicolor]
          Length = 686

 Score =  356 bits (913), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 190/528 (35%), Positives = 306/528 (57%), Gaps = 33/528 (6%)

Query: 86  PTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNM 145
           P +F  N L+       S  DAR +FD++PVK+  SYN M+S +AN G++  AR+ FD  
Sbjct: 95  PDSFSYNTLLHALGVSSSLADARALFDEMPVKDSVSYNVMISSHANHGLVSLARHYFDLA 154

Query: 146 AERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRF-SISCNEFSFAGILTICVKLEELKLT 204
            E+D VSWN M+  Y ++G ++E    +     + +IS N    AG +  C ++EE +  
Sbjct: 155 PEKDAVSWNGMLAAYIRNGRIQEARDLFDSRTEWDAISWNAL-MAGYVQ-CSQIEEAQKM 212

Query: 205 RQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKL 264
                Q        +VV  +++V  +A+ G++++ARRLFD    RDV TWT +VSGYA+ 
Sbjct: 213 FNRMPQ-------RDVVSWNTMVSGHARRGDMAEARRLFDVAPIRDVFTWTAVVSGYAQN 265

Query: 265 GDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCL 324
           G +E A ++F+ MPEKN VSW  ++A Y +  + ++A ELF  M       N  ++++ L
Sbjct: 266 GMLEEAKRVFDAMPEKNAVSWNAMMAAYVQRRMMEEAKELFDAMPCR----NVASWNTML 321

Query: 325 CACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLID------------------MYSKCG 366
              A    L   + +   + + +  S   ++++                     MY KCG
Sbjct: 322 TGYAQAGMLDEARAIFDMMPQKDAVSWAAMLAAYSQGGFSEETLQLFKEMGRCAMYFKCG 381

Query: 367 CLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVIL 426
            + +    F+  + + + + WNTMI+   +HG+ ++A+ +F  M ++S KPD ITL  +L
Sbjct: 382 NMEEAHSAFEEMEER-DIVSWNTMIAGYARHGFGKEALEVFDTMRKTSTKPDDITLVGVL 440

Query: 427 NACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHD 486
            AC+HSGLV++G++YF SM  D G+    EH+ C+I+LL +AG  D+ +N ++ MP+E D
Sbjct: 441 AACSHSGLVEKGISYFYSMHRDFGVTAKPEHYTCMIDLLGRAGRLDEAVNLMKDMPFEPD 500

Query: 487 SYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQL 546
           S +W AL G  RIH N ++GR   +++ +  P+++  + LLS+IY++ GK R V+K+R +
Sbjct: 501 STMWGALLGASRIHRNSELGRNAAEKIFELEPENAGMYVLLSNIYASSGKWRDVDKMRLM 560

Query: 547 INERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQM 594
           ++ER  KK    SWIE++NKVH FSV DS+HP R+ +Y  LE L  +M
Sbjct: 561 MHERGVKKVPGFSWIEVQNKVHTFSVGDSVHPEREDIYGFLEDLDIRM 608


>gi|242075862|ref|XP_002447867.1| hypothetical protein SORBIDRAFT_06g017170 [Sorghum bicolor]
 gi|241939050|gb|EES12195.1| hypothetical protein SORBIDRAFT_06g017170 [Sorghum bicolor]
          Length = 688

 Score =  356 bits (913), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 194/590 (32%), Positives = 324/590 (54%), Gaps = 43/590 (7%)

Query: 16  PNNCLIQSFLSLISK---GQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGK 72
           P+ C   + ++ +++   G  ++A+  L  +      L A + A  L  CA  K  + G+
Sbjct: 112 PDQCSYNAVVAALARHGRGHAADALRFLAAMHADDFVLNAYSFASALSACAAEKDSRTGE 171

Query: 73  RVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANL 132
           +VH  L           + + L+ MY KC    DAR+VF                     
Sbjct: 172 QVH-GLVARSPHADDVHIRSALVDMYAKCERPEDARRVF--------------------- 209

Query: 133 GMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGIL 192
                     D M ER+VVSWN++I  Y ++G V E L  +  +     S +E + + ++
Sbjct: 210 ----------DAMPERNVVSWNSLITCYEQNGPVGEALMLFVEMMAAGFSPDEVTLSSVM 259

Query: 193 TICVKLEELKLTRQVHGQVLVTGFL-SNVVISSSIVDAYAKCGELSDARRLFDETDARDV 251
           + C  L   +  RQVH  ++    L  ++V+++++VD YAKCG   +AR +FD   +R +
Sbjct: 260 SACAGLAADREGRQVHAHMVKCDRLRDDMVLNNALVDMYAKCGRTWEARCIFDSMPSRSI 319

Query: 252 LTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMIL 311
           ++ T++++GYAK  ++E A  +F++M EKN ++W  LIA Y +NG  ++A+ LF ++   
Sbjct: 320 VSETSILTGYAKSANVEDAQVVFSQMVEKNVIAWNVLIAAYAQNGEEEEAIRLFVQLKRD 379

Query: 312 RIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFR------SNTIVMSSLIDMYSKC 365
            I P  +T+ + L AC +I  L+ G+Q H  +++  FR      S+  V +SL+DMY K 
Sbjct: 380 SIWPTHYTYGNVLNACGNIADLQLGQQAHVHVLKEGFRFDFGPESDVFVGNSLVDMYLKT 439

Query: 366 GCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVI 425
           G ++DG +VF+    ++N + WN MI    Q+G  + A+ LF  M+ S+  PD +T+  +
Sbjct: 440 GSIDDGAKVFERMAARDN-VSWNAMIVGYAQNGRAKDALHLFERMLCSNENPDSVTMIGV 498

Query: 426 LNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEH 485
           L+AC HSGLV EG  YF SMT D GI P+++H+ C+++LL +AG   +    +  MP E 
Sbjct: 499 LSACGHSGLVDEGRRYFHSMTEDHGITPSRDHYTCMVDLLGRAGHLKEAEELINDMPMEP 558

Query: 486 DSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQ 545
           DS LW +L G CR+H N+++G     +L + +PQ+S  + LLS++Y+ +GK   V +VR+
Sbjct: 559 DSVLWASLLGACRLHKNVELGEWTAGRLFELDPQNSGPYVLLSNMYAEMGKWAEVFRVRR 618

Query: 546 LINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQMG 595
            + +R   K+   SWIEI  K++ F   D  HP R+ +++ L  +  +MG
Sbjct: 619 SMKDRGVSKQPGCSWIEIGRKMNVFLARDKRHPCRNEIHNTLRIIQMEMG 668



 Score =  216 bits (549), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 147/508 (28%), Positives = 239/508 (47%), Gaps = 79/508 (15%)

Query: 84  KTPT---TFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARN 140
           K+P    TFL N L+S Y + G   DAR+VFD+IP++N FSYN +LS YA LG    AR 
Sbjct: 45  KSPVAGETFLLNTLVSTYARLGRLRDARRVFDEIPLRNTFSYNALLSAYARLGRPDEARA 104

Query: 141 LFDNMAERDVVSWNTMIIGYAKSGA--VEEGLKFYKVLRRFSISCNEFSFAGILTICVKL 198
           LF+ + + D  S+N ++   A+ G     + L+F   +       N +SFA  L+ C   
Sbjct: 105 LFEAIPDPDQCSYNAVVAALARHGRGHAADALRFLAAMHADDFVLNAYSFASALSACAAE 164

Query: 199 EELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMV 258
           ++ +   QVHG V  +    +V I S++VD YAKC    DARR+FD    R+V++W +++
Sbjct: 165 KDSRTGEQVHGLVARSPHADDVHIRSALVDMYAKCERPEDARRVFDAMPERNVVSWNSLI 224

Query: 259 SGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQH 318
           + Y +                               NG   +AL LF  MM     P++ 
Sbjct: 225 TCYEQ-------------------------------NGPVGEALMLFVEMMAAGFSPDEV 253

Query: 319 TFSSCLCACASIVSLKHGKQVHGFLIRTN-FRSNTIVMSSLIDMYSKCGCLNDGRQVFDL 377
           T SS + ACA + + + G+QVH  +++ +  R + ++ ++L+DMY+KCG   + R +FD 
Sbjct: 254 TLSSVMSACAGLAADREGRQVHAHMVKCDRLRDDMVLNNALVDMYAKCGRTWEARCIFDS 313

Query: 378 TDNK------------------------------ENSMLWNTMISALTQHGYDEQAIRLF 407
             ++                              +N + WN +I+A  Q+G +E+AIRLF
Sbjct: 314 MPSRSIVSETSILTGYAKSANVEDAQVVFSQMVEKNVIAWNVLIAAYAQNGEEEEAIRLF 373

Query: 408 HDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYF-----ESMTHDLGIIPNQEHHACLI 462
             + R S+ P   T   +LNAC +   +Q G         E    D G   +      L+
Sbjct: 374 VQLKRDSIWPTHYTYGNVLNACGNIADLQLGQQAHVHVLKEGFRFDFGPESDVFVGNSLV 433

Query: 463 ELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLI--DQNPQS 520
           ++  + G  D      E+M    D+  WNA+      +G       + ++++  ++NP S
Sbjct: 434 DMYLKTGSIDDGAKVFERMA-ARDNVSWNAMIVGYAQNGRAKDALHLFERMLCSNENPDS 492

Query: 521 SATHGLLSSIYSALGKGRLVEKVRQLIN 548
               G+L    SA G   LV++ R+  +
Sbjct: 493 VTMIGVL----SACGHSGLVDEGRRYFH 516



 Score =  152 bits (385), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 89/319 (27%), Positives = 163/319 (51%), Gaps = 4/319 (1%)

Query: 201 LKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSG 260
           L   R  H ++L +       + +++V  YA+ G L DARR+FDE   R+  ++  ++S 
Sbjct: 33  LSGARAAHARILKSPVAGETFLLNTLVSTYARLGRLRDARRVFDEIPLRNTFSYNALLSA 92

Query: 261 YAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQ--KALELFTRMMILRIRPNQH 318
           YA+LG  + A  LF  +P+ +  S+  ++A   R+G G    AL     M       N +
Sbjct: 93  YARLGRPDEARALFEAIPDPDQCSYNAVVAALARHGRGHAADALRFLAAMHADDFVLNAY 152

Query: 319 TFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLT 378
           +F+S L ACA+    + G+QVHG + R+    +  + S+L+DMY+KC    D R+VFD  
Sbjct: 153 SFASALSACAAEKDSRTGEQVHGLVARSPHADDVHIRSALVDMYAKCERPEDARRVFDAM 212

Query: 379 DNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEG 438
             + N + WN++I+   Q+G   +A+ LF +M+ +   PD++TL+ +++AC      +EG
Sbjct: 213 PER-NVVSWNSLITCYEQNGPVGEALMLFVEMMAAGFSPDEVTLSSVMSACAGLAADREG 271

Query: 439 LTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCR 498
                 M     +  +   +  L+++ A+ G + +     + MP        + L G  +
Sbjct: 272 RQVHAHMVKCDRLRDDMVLNNALVDMYAKCGRTWEARCIFDSMPSRSIVSETSILTGYAK 331

Query: 499 IHGNIDMGRKVVDQLIDQN 517
              N++  + V  Q++++N
Sbjct: 332 -SANVEDAQVVFSQMVEKN 349


>gi|15222566|ref|NP_173907.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75172213|sp|Q9FRI5.1|PPR57_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g25360
 gi|11067273|gb|AAG28801.1|AC079374_4 hypothetical protein [Arabidopsis thaliana]
 gi|332192491|gb|AEE30612.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 790

 Score =  355 bits (910), Expect = 5e-95,   Method: Compositional matrix adjust.
 Identities = 184/512 (35%), Positives = 300/512 (58%), Gaps = 7/512 (1%)

Query: 88  TFLSNHLISMYFKCGSDVD----ARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFD 143
           T +SN L+S+Y KC S       ARKVFD+I  K+  S+  M++GY   G       L +
Sbjct: 184 TSVSNALVSVYSKCASSPSLLHSARKVFDEILEKDERSWTTMMTGYVKNGYFDLGEELLE 243

Query: 144 NMAER-DVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELK 202
            M +   +V++N MI GY   G  +E L+  + +    I  +EF++  ++  C     L+
Sbjct: 244 GMDDNMKLVAYNAMISGYVNRGFYQEALEMVRRMVSSGIELDEFTYPSVIRACATAGLLQ 303

Query: 203 LTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYA 262
           L +QVH  VL     S     +S+V  Y KCG+  +AR +F++  A+D+++W  ++SGY 
Sbjct: 304 LGKQVHAYVLRREDFS-FHFDNSLVSLYYKCGKFDEARAIFEKMPAKDLVSWNALLSGYV 362

Query: 263 KLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSS 322
             G +  A  +F EM EKN +SW  +I+G   NG G++ L+LF+ M      P  + FS 
Sbjct: 363 SSGHIGEAKLIFKEMKEKNILSWMIMISGLAENGFGEEGLKLFSCMKREGFEPCDYAFSG 422

Query: 323 CLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKE 382
            + +CA + +  +G+Q H  L++  F S+    ++LI MY+KCG + + RQVF  T    
Sbjct: 423 AIKSCAVLGAYCNGQQYHAQLLKIGFDSSLSAGNALITMYAKCGVVEEARQVFR-TMPCL 481

Query: 383 NSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYF 442
           +S+ WN +I+AL QHG+  +A+ ++ +M++  ++PD+ITL  +L AC+H+GLV +G  YF
Sbjct: 482 DSVSWNALIAALGQHGHGAEAVDVYEEMLKKGIRPDRITLLTVLTACSHAGLVDQGRKYF 541

Query: 443 ESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGN 502
           +SM     I P  +H+A LI+LL ++G      + +E +P++  + +W AL   CR+HGN
Sbjct: 542 DSMETVYRIPPGADHYARLIDLLCRSGKFSDAESVIESLPFKPTAEIWEALLSGCRVHGN 601

Query: 503 IDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIE 562
           +++G    D+L    P+   T+ LLS++++A G+   V +VR+L+ +R  KKE A SWIE
Sbjct: 602 MELGIIAADKLFGLIPEHDGTYMLLSNMHAATGQWEEVARVRKLMRDRGVKKEVACSWIE 661

Query: 563 IENKVHAFSVSDSLHPMRDVLYSVLEQLAGQM 594
           +E +VH F V D+ HP  + +Y  L+ L  +M
Sbjct: 662 METQVHTFLVDDTSHPEAEAVYIYLQDLGKEM 693



 Score =  176 bits (446), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 141/541 (26%), Positives = 248/541 (45%), Gaps = 46/541 (8%)

Query: 48  IRLPAETLAFILQQCAESK--SLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDV 105
           +R  A   A  L+ C   +  SL+L + VH ++ +T    P   + N LI +Y K     
Sbjct: 8   VRAIANRYAANLRLCLPLRRTSLQLARAVHGNI-ITFGFQPRAHILNRLIDVYCKSSELN 66

Query: 106 DARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDN--MAERDVVSWNTMIIGYAKS 163
            AR++FD+I   +  +   M+SGY   G +  AR +F+   +  RD V +N MI G++ +
Sbjct: 67  YARQLFDEISEPDKIARTTMVSGYCASGDITLARGVFEKAPVCMRDTVMYNAMITGFSHN 126

Query: 164 GAVEEGLKFYKVLRRFSISCNEFSFAGILT-ICVKLEELKLTRQVHGQVLVTGFLSNVVI 222
                 +  +  ++      + F+FA +L  + +  ++ K   Q H   L +G      +
Sbjct: 127 NDGYSAINLFCKMKHEGFKPDNFTFASVLAGLALVADDEKQCVQFHAAALKSGAGYITSV 186

Query: 223 SSSIVDAYAKCGE----LSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMP 278
           S+++V  Y+KC      L  AR++FDE   +D  +WTTM++GY K G  +   +L   M 
Sbjct: 187 SNALVSVYSKCASSPSLLHSARKVFDEILEKDERSWTTMMTGYVKNGYFDLGEELLEGMD 246

Query: 279 EK-NPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGK 337
           +    V++  +I+GY   G  Q+ALE+  RM+   I  ++ T+ S + ACA+   L+ GK
Sbjct: 247 DNMKLVAYNAMISGYVNRGFYQEALEMVRRMVSSGIELDEFTYPSVIRACATAGLLQLGK 306

Query: 338 QVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFD--------------------- 376
           QVH +++R    S     +SL+ +Y KCG  ++ R +F+                     
Sbjct: 307 QVHAYVLRREDFSFHFD-NSLVSLYYKCGKFDEARAIFEKMPAKDLVSWNALLSGYVSSG 365

Query: 377 --------LTDNKENSML-WNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILN 427
                     + KE ++L W  MIS L ++G+ E+ ++LF  M R   +P     +  + 
Sbjct: 366 HIGEAKLIFKEMKEKNILSWMIMISGLAENGFGEEGLKLFSCMKREGFEPCDYAFSGAIK 425

Query: 428 ACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDS 487
           +C   G    G  Y   +   +G   +      LI + A+ G  ++       MP   DS
Sbjct: 426 SCAVLGAYCNGQQYHAQLL-KIGFDSSLSAGNALITMYAKCGVVEEARQVFRTMPC-LDS 483

Query: 488 YLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLI 547
             WNAL      HG+      V ++++ +  +       L ++ +A     LV++ R+  
Sbjct: 484 VSWNALIAALGQHGHGAEAVDVYEEMLKKGIRPDRI--TLLTVLTACSHAGLVDQGRKYF 541

Query: 548 N 548
           +
Sbjct: 542 D 542



 Score =  176 bits (446), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 108/396 (27%), Positives = 197/396 (49%), Gaps = 39/396 (9%)

Query: 11  NRKNLPNNCLIQSFLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKL 70
           N K +  N +I  +   +++G   EA+  +  +   GI L   T   +++ CA +  L+L
Sbjct: 248 NMKLVAYNAMISGY---VNRGFYQEALEMVRRMVSSGIELDEFTYPSVIRACATAGLLQL 304

Query: 71  GKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYA 130
           GK+VH ++   +R+  +    N L+S+Y+KCG   +AR +F+K+P K+L S+N +LSGY 
Sbjct: 305 GKQVHAYV--LRREDFSFHFDNSLVSLYYKCGKFDEARAIFEKMPAKDLVSWNALLSGYV 362

Query: 131 NLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAG 190
           + G +  A+ +F  M E++++SW  MI G A++G  EEGLK +  ++R      +++F+G
Sbjct: 363 SSGHIGEAKLIFKEMKEKNILSWMIMISGLAENGFGEEGLKLFSCMKREGFEPCDYAFSG 422

Query: 191 ILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARD 250
            +  C  L      +Q H Q+L  GF S++   ++++  YAKCG + +AR++F      D
Sbjct: 423 AIKSCAVLGAYCNGQQYHAQLLKIGFDSSLSAGNALITMYAKCGVVEEARQVFRTMPCLD 482

Query: 251 VLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMI 310
            ++W  +                               IA   ++G G +A++++  M+ 
Sbjct: 483 SVSWNAL-------------------------------IAALGQHGHGAEAVDVYEEMLK 511

Query: 311 LRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFR--SNTIVMSSLIDMYSKCGCL 368
             IRP++ T  + L AC+    +  G++    +  T +R        + LID+  + G  
Sbjct: 512 KGIRPDRITLLTVLTACSHAGLVDQGRKYFDSM-ETVYRIPPGADHYARLIDLLCRSGKF 570

Query: 369 NDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAI 404
           +D   V +    K  + +W  ++S    HG  E  I
Sbjct: 571 SDAESVIESLPFKPTAEIWEALLSGCRVHGNMELGI 606



 Score = 56.2 bits (134), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 57/286 (19%), Positives = 112/286 (39%), Gaps = 60/286 (20%)

Query: 310 ILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLN 369
           ++R   N++  +  LC      SL+  + VHG +I   F+    +++ LID+Y K   LN
Sbjct: 7   LVRAIANRYAANLRLCLPLRRTSLQLARAVHGNIITFGFQPRAHILNRLIDVYCKSSELN 66

Query: 370 DGRQVFDLTDNKE--------------------------------NSMLWNTMISALTQH 397
             RQ+FD     +                                +++++N MI+  + +
Sbjct: 67  YARQLFDEISEPDKIARTTMVSGYCASGDITLARGVFEKAPVCMRDTVMYNAMITGFSHN 126

Query: 398 GYDEQAIRLFHDMVRSSVKPDKITLAVILNACT------------HSGLVQEGLTYFESM 445
                AI LF  M     KPD  T A +L                H+  ++ G  Y  S+
Sbjct: 127 NDGYSAINLFCKMKHEGFKPDNFTFASVLAGLALVADDEKQCVQFHAAALKSGAGYITSV 186

Query: 446 THDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKM---PYEHDSYLWNALHGVCRIHGN 502
           ++             L+ + ++   S  L++   K+     E D   W  +      +G 
Sbjct: 187 SN------------ALVSVYSKCASSPSLLHSARKVFDEILEKDERSWTTMMTGYVKNGY 234

Query: 503 IDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLIN 548
            D+G ++++ + D N +  A + ++S   +       +E VR++++
Sbjct: 235 FDLGEELLEGM-DDNMKLVAYNAMISGYVNRGFYQEALEMVRRMVS 279


>gi|356511263|ref|XP_003524346.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Glycine max]
          Length = 763

 Score =  354 bits (909), Expect = 6e-95,   Method: Compositional matrix adjust.
 Identities = 175/503 (34%), Positives = 286/503 (56%), Gaps = 40/503 (7%)

Query: 92  NHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVV 151
           N L+  Y K     DAR++FD++PV+++ S+N M+SGYA +G +  A+ LF+    RDV 
Sbjct: 205 NCLMGGYVKRNMLGDARQLFDRMPVRDVISWNTMISGYAQVGDLSQAKRLFNESPIRDVF 264

Query: 152 SWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQV 211
           +W  M+ GY ++G V+E  K++                         +E+ +  ++    
Sbjct: 265 TWTAMVSGYVQNGMVDEARKYF-------------------------DEMPVKNEISYNA 299

Query: 212 LVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESAS 271
           ++ G              Y +  ++  A  LF+    R++ +W TM++GY + G +  A 
Sbjct: 300 MLAG--------------YVQYKKMVIAGELFEAMPCRNISSWNTMITGYGQNGGIAQAR 345

Query: 272 KLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIV 331
           KLF+ MP+++ VSW  +I+GY +NG  ++AL +F  M       N+ TFS  L  CA I 
Sbjct: 346 KLFDMMPQRDCVSWAAIISGYAQNGHYEEALNMFVEMKRDGESSNRSTFSCALSTCADIA 405

Query: 332 SLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMI 391
           +L+ GKQVHG +++  F +   V ++L+ MY KCG  ++   VF+  + K+  + WNTMI
Sbjct: 406 ALELGKQVHGQVVKAGFETGCFVGNALLGMYFKCGSTDEANDVFEGIEEKD-VVSWNTMI 464

Query: 392 SALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGI 451
           +   +HG+  QA+ LF  M ++ VKPD+IT+  +L+AC+HSGL+  G  YF SM  D  +
Sbjct: 465 AGYARHGFGRQALVLFESMKKAGVKPDEITMVGVLSACSHSGLIDRGTEYFYSMDRDYNV 524

Query: 452 IPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVD 511
            P  +H+ C+I+LL +AG  ++  N +  MP++  +  W AL G  RIHGN ++G K  +
Sbjct: 525 KPTSKHYTCMIDLLGRAGRLEEAENLMRNMPFDPGAASWGALLGASRIHGNTELGEKAAE 584

Query: 512 QLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFS 571
            +    PQ+S  + LLS++Y+A G+   V K+R  + E   +K    SW+E++NK+H FS
Sbjct: 585 MVFKMEPQNSGMYVLLSNLYAASGRWVDVGKMRSKMREAGVQKVTGYSWVEVQNKIHTFS 644

Query: 572 VSDSLHPMRDVLYSVLEQLAGQM 594
           V D  HP +D +Y+ LE+L  +M
Sbjct: 645 VGDCFHPEKDRIYAFLEELDLKM 667



 Score =  182 bits (461), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 114/357 (31%), Positives = 193/357 (54%), Gaps = 21/357 (5%)

Query: 83  RKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLF 142
           R++  ++  N +IS Y +      AR +FDK+P ++LFS+N ML+GY     +  A  LF
Sbjct: 74  RRSSVSY--NAMISGYLRNAKFSLARDLFDKMPERDLFSWNVMLTGYVRNRRLGEAHKLF 131

Query: 143 DNMAERDVVSWNTMIIGYAKSGAVEEGLK-FYKVLRRFSISCNEFSFAGILTICVKLEEL 201
           D M ++DVVSWN M+ GYA++G V+E  + F K+  R SIS N     G+L   V    L
Sbjct: 132 DLMPKKDVVSWNAMLSGYAQNGFVDEAREVFNKMPHRNSISWN-----GLLAAYVHNGRL 186

Query: 202 KLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGY 261
           K  R    ++  +     ++  + ++  Y K   L DAR+LFD    RDV++W TM+SGY
Sbjct: 187 KEAR----RLFESQSNWELISWNCLMGGYVKRNMLGDARQLFDRMPVRDVISWNTMISGY 242

Query: 262 AKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFS 321
           A++GD+  A +LFNE P ++  +WT +++GY +NG+  +A + F  M +     N+ +++
Sbjct: 243 AQVGDLSQAKRLFNESPIRDVFTWTAMVSGYVQNGMVDEARKYFDEMPV----KNEISYN 298

Query: 322 SCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNK 381
           + L   A  V  K    + G L       N    +++I  Y + G +   R++FD+   +
Sbjct: 299 AML---AGYVQYKK-MVIAGELFEAMPCRNISSWNTMITGYGQNGGIAQARKLFDMMPQR 354

Query: 382 ENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEG 438
           +  + W  +IS   Q+G+ E+A+ +F +M R     ++ T +  L+ C     ++ G
Sbjct: 355 D-CVSWAAIISGYAQNGHYEEALNMFVEMKRDGESSNRSTFSCALSTCADIAALELG 410



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 52/168 (30%), Positives = 89/168 (52%), Gaps = 10/168 (5%)

Query: 23  SFLSLIS----KGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHL 78
           S+ ++IS     G   EA++    + + G      T +  L  CA+  +L+LGK+VH  +
Sbjct: 358 SWAAIISGYAQNGHYEEALNMFVEMKRDGESSNRSTFSCALSTCADIAALELGKQVHGQV 417

Query: 79  KLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHA 138
                +T   F+ N L+ MYFKCGS  +A  VF+ I  K++ S+N M++GYA  G  + A
Sbjct: 418 VKAGFET-GCFVGNALLGMYFKCGSTDEANDVFEGIEEKDVVSWNTMIAGYARHGFGRQA 476

Query: 139 RNLFDNMAERDVVSWNTMIIGY----AKSGAVEEGLK-FYKVLRRFSI 181
             LF++M +  V      ++G     + SG ++ G + FY + R +++
Sbjct: 477 LVLFESMKKAGVKPDEITMVGVLSACSHSGLIDRGTEYFYSMDRDYNV 524


>gi|449525261|ref|XP_004169636.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g44230-like [Cucumis sativus]
          Length = 650

 Score =  354 bits (909), Expect = 7e-95,   Method: Compositional matrix adjust.
 Identities = 166/442 (37%), Positives = 270/442 (61%), Gaps = 5/442 (1%)

Query: 153 WNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQ-V 211
           W  MI GYA  G + E   FY  +RR  +    F+F+ +   C     + L +QVH Q +
Sbjct: 110 WTAMIRGYALQGLLSESTNFYTRMRRDGVGPVSFTFSALFKACGAALNMDLGKQVHAQTI 169

Query: 212 LVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESAS 271
           L+ GF S++ + +S++D Y KCG L  AR++FDE   RDV++WT ++  YAK GDMESAS
Sbjct: 170 LIGGFASDLYVGNSMIDLYVKCGFLGCARKVFDEMSERDVVSWTELIVAYAKYGDMESAS 229

Query: 272 KLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIV 331
            LF+++P K+ V+WT ++ GY +NG  ++ALE F +M  + +  ++ T +  + ACA + 
Sbjct: 230 GLFDDLPSKDMVAWTAMVTGYAQNGRPKEALEYFQKMQDVGMETDEVTLAGVISACAQLG 289

Query: 332 SLKHGKQVHGFLIRTNF--RSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNT 389
           ++KH   +     R+ F    N +V S+LIDMYSKCG  ++  +VF++   + N   +++
Sbjct: 290 AVKHANWIRDIAERSGFGPSGNVVVGSALIDMYSKCGSPDEAYKVFEVMKER-NVFSYSS 348

Query: 390 MISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDL 449
           MI     HG    A++LFHDM+++ ++P+K+T   IL+AC+H+GLV++G   F  M    
Sbjct: 349 MILGYAMHGRAHSALQLFHDMLKTEIRPNKVTFIGILSACSHAGLVEQGRQLFAKMEKFF 408

Query: 450 GIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKV 509
           G+ P+ +H+AC+++LL +AGC ++ ++ ++ MP E +  +W AL G CRIHGN D+ +  
Sbjct: 409 GVAPSPDHYACMVDLLGRAGCLEEALDLVKTMPMEPNGGVWGALLGACRIHGNPDIAQIA 468

Query: 510 VDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIEN-KVH 568
            ++L    P     + LLS+IY++ G+   V K+R++I E+ FKK    SW E +N ++H
Sbjct: 469 ANELFKLEPNGIGNYILLSNIYASAGRWEEVSKLRKVIREKGFKKNPGCSWFEGKNGEIH 528

Query: 569 AFSVSDSLHPMRDVLYSVLEQL 590
            F   D+ HP    +   L+QL
Sbjct: 529 DFFAGDTTHPRSSEIRQALKQL 550



 Score =  172 bits (437), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 100/389 (25%), Positives = 192/389 (49%), Gaps = 35/389 (8%)

Query: 14  NLPNNCLIQSFLSLIS-KGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGK 72
           N PN  L  + +   + +G LSE+ +    + + G+   + T + + + C  + ++ LGK
Sbjct: 103 NYPNPFLWTAMIRGYALQGLLSESTNFYTRMRRDGVGPVSFTFSALFKACGAALNMDLGK 162

Query: 73  RVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANL 132
           +VH    L        ++ N +I +Y KCG    ARKVFD++  +++ S+  ++  YA  
Sbjct: 163 QVHAQTILIGGFASDLYVGNSMIDLYVKCGFLGCARKVFDEMSERDVVSWTELIVAYAKY 222

Query: 133 GMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGIL 192
           G M+ A  LFD++  +D+V+W  M+ GYA++G  +E L++++ ++   +  +E + AG++
Sbjct: 223 GDMESASGLFDDLPSKDMVAWTAMVTGYAQNGRPKEALEYFQKMQDVGMETDEVTLAGVI 282

Query: 193 TICVKLEELKLTRQVHGQVLVTGF--LSNVVISSSIVDAYAKCGELSDARRLFDETDARD 250
           + C +L  +K    +      +GF    NVV+ S+++D Y+KCG   +A ++F+    R+
Sbjct: 283 SACAQLGAVKHANWIRDIAERSGFGPSGNVVVGSALIDMYSKCGSPDEAYKVFEVMKERN 342

Query: 251 VLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMI 310
           V ++++M+ GYA  G   SA                               L+LF  M+ 
Sbjct: 343 VFSYSSMILGYAMHGRAHSA-------------------------------LQLFHDMLK 371

Query: 311 LRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIR-TNFRSNTIVMSSLIDMYSKCGCLN 369
             IRPN+ TF   L AC+    ++ G+Q+   + +      +    + ++D+  + GCL 
Sbjct: 372 TEIRPNKVTFIGILSACSHAGLVEQGRQLFAKMEKFFGVAPSPDHYACMVDLLGRAGCLE 431

Query: 370 DGRQVFDLTDNKENSMLWNTMISALTQHG 398
           +   +      + N  +W  ++ A   HG
Sbjct: 432 EALDLVKTMPMEPNGGVWGALLGACRIHG 460



 Score =  102 bits (255), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 81/313 (25%), Positives = 136/313 (43%), Gaps = 47/313 (15%)

Query: 273 LFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVS 332
           +F ++   NP  WT +I GY   GL  ++   +TRM    + P   TFS+   AC + ++
Sbjct: 98  VFGQVNYPNPFLWTAMIRGYALQGLLSESTNFYTRMRRDGVGPVSFTFSALFKACGAALN 157

Query: 333 LKHGKQVHG-FLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKE--------- 382
           +  GKQVH   ++   F S+  V +S+ID+Y KCG L   R+VFD    ++         
Sbjct: 158 MDLGKQVHAQTILIGGFASDLYVGNSMIDLYVKCGFLGCARKVFDEMSERDVVSWTELIV 217

Query: 383 ---------------------NSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKIT 421
                                + + W  M++   Q+G  ++A+  F  M    ++ D++T
Sbjct: 218 AYAKYGDMESASGLFDDLPSKDMVAWTAMVTGYAQNGRPKEALEYFQKMQDVGMETDEVT 277

Query: 422 LAVILNACTHSGLVQEGLTYFESMTHDLGIIP--NQEHHACLIELLAQAGCSDQLMNQLE 479
           LA +++AC   G V+    +   +    G  P  N    + LI++ ++ G  D+     E
Sbjct: 278 LAGVISACAQLGAVKHA-NWIRDIAERSGFGPSGNVVVGSALIDMYSKCGSPDEAYKVFE 336

Query: 480 KMP----YEHDSY-LWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSAL 534
            M     + + S  L  A+HG  R H  + +   ++   I  N  +         I SA 
Sbjct: 337 VMKERNVFSYSSMILGYAMHG--RAHSALQLFHDMLKTEIRPNKVT------FIGILSAC 388

Query: 535 GKGRLVEKVRQLI 547
               LVE+ RQL 
Sbjct: 389 SHAGLVEQGRQLF 401


>gi|357167614|ref|XP_003581249.1| PREDICTED: pentatricopeptide repeat-containing protein At4g21300-like
            [Brachypodium distachyon]
          Length = 1430

 Score =  354 bits (908), Expect = 8e-95,   Method: Compositional matrix adjust.
 Identities = 195/590 (33%), Positives = 329/590 (55%), Gaps = 47/590 (7%)

Query: 16   PNNCLIQSFLSLISK-GQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRV 74
            P+ C   + ++ +++  + ++A+  L  +      L A + A  L  CA  K  + G +V
Sbjct: 855  PDQCSYNAVIAALAQHSRGADALLFLAAMHADDFVLNAYSFASALSACAAEKDSRTGVQV 914

Query: 75   HLHLKLTQRKTP---TTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYAN 131
            H  +     K+P     ++ + L+ MY KC    +AR+V                     
Sbjct: 915  HALVS----KSPHAKDVYIGSALLDMYAKCEWPEEARRV--------------------- 949

Query: 132  LGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGI 191
                      F+ M ER++VSWN++I  Y ++G V E L  +  + +     +E + A +
Sbjct: 950  ----------FEAMPERNIVSWNSLITCYEQNGPVGEALVLFVSMMKAGFVPDEVTLASV 999

Query: 192  LTICVKLEELKLTRQVHGQVLVTG-FLSNVVISSSIVDAYAKCGELSDARRLFDETDARD 250
            ++ C  L   +  RQVH +V+ +  F  ++V+S+++VD YAKCG    AR +FD   +R 
Sbjct: 1000 MSACAGLAADREGRQVHARVVKSDRFREDMVLSNALVDMYAKCGRTRAARCVFDRMASRS 1059

Query: 251  VLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMI 310
            V++ T++++GYA+  ++E A  +F++M EKN ++W  LIA Y +NG  ++AL LF R+  
Sbjct: 1060 VVSETSLITGYARSANVEDAQMVFSQMVEKNVIAWNVLIAAYAQNGEEEEALRLFVRLKR 1119

Query: 311  LRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFR------SNTIVMSSLIDMYSK 364
              + P  +T+ + L AC ++  L+ G+Q H  +++  FR      S+  V +SL+DMY K
Sbjct: 1120 ESVWPTHYTYGNVLNACGNVADLQLGQQAHVHVLKEGFRFDFGPESDVFVGNSLVDMYLK 1179

Query: 365  CGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAV 424
             G ++DG +VF+    ++N + WN MI    Q+G  + A+ LF  M+ S   PD +T+  
Sbjct: 1180 TGSIDDGAKVFERMAARDN-VSWNAMIVGHAQNGRAKDALHLFERMLCSKESPDSVTMIG 1238

Query: 425  ILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYE 484
            +L+AC HSGLV+EG  YF SMT D GIIP+Q+H+ C+I+LL +AG   ++   +++M  E
Sbjct: 1239 VLSACGHSGLVEEGRRYFRSMTEDHGIIPSQDHYTCMIDLLGRAGHLKEVEELIKEMSME 1298

Query: 485  HDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVR 544
             D+ LW +L G CR+H N++MG     +L + +P++S  + LLS++Y+ LGK   V +VR
Sbjct: 1299 PDAVLWASLLGSCRLHKNVEMGEWAAGKLFELDPRNSGPYVLLSNMYAELGKWADVFRVR 1358

Query: 545  QLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQM 594
              +  R   K+   SWIEI  KV  F   D+ HP ++ ++++L  +  QM
Sbjct: 1359 SSMKHRGVSKQPGCSWIEIGRKVSVFLARDNGHPCKNEIHAILRIIQMQM 1408



 Score =  258 bits (658), Expect = 9e-66,   Method: Compositional matrix adjust.
 Identities = 143/472 (30%), Positives = 246/472 (52%), Gaps = 33/472 (6%)

Query: 47  GIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVD 106
           G+R    T++  +  C ++ +L+ G+ +H  + L         + + ++ MY KCG+   
Sbjct: 247 GVRPLGYTVSHAVLACRDNNALEEGRCIHAFV-LRHGYEHHVHVRSSVVDMYAKCGAMDA 305

Query: 107 ARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAV 166
           A+ +F+  P+K++    +++SG A+ G +  A+ +F+ M ER++VSWN M+ GY +S  +
Sbjct: 306 AQSLFNLAPMKDMVMSTSIVSGLASCGRIADAKRVFEGMKERNLVSWNAMLTGYIRSMDL 365

Query: 167 EEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSI 226
              L  ++ +R+ +   +  +   +L+ C  + ++    +VH   +  GF S+ ++ +++
Sbjct: 366 TGALLLFQQMRQETREFDAITLGSVLSACTGILDIGKGEEVHAFAIKCGFFSSPILKNAL 425

Query: 227 VDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWT 286
           V  Y+KCG L  A RL                              LF    E++  SW 
Sbjct: 426 VRMYSKCGCLRSAERLL-----------------------------LFEMGSERDSYSWN 456

Query: 287 TLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRT 346
           +LI+GY R+ + + AL   T+M    + PNQ TFSS L ACA+I  LK G Q+H ++IR 
Sbjct: 457 SLISGYERHSMSEAALYALTKMQS-EVTPNQSTFSSALAACANIFLLKQGMQIHAYMIRK 515

Query: 347 NFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRL 406
            +  + I+ S LIDMY KC   +   ++F+   ++ + +LWN+MI      G  E  + L
Sbjct: 516 GYEIDDILRSVLIDMYCKCRQFDYSIRIFEARPSR-DVILWNSMIFGCAYSGKGEYGLDL 574

Query: 407 FHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLA 466
           F +M +  +K D +T    L +C   G V+ G +YF  M  D  IIP  EH+ C+IELL 
Sbjct: 575 FDEMQKQGIKADSVTFLGALVSCISEGHVRLGRSYFTLMM-DESIIPRIEHYECMIELLG 633

Query: 467 QAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNP 518
           + GC  +L + +E MP+E  + +W  +   CR +GN  +G +    + D NP
Sbjct: 634 KHGCMVELEDFVEHMPFEPTTAMWLRIFDCCREYGNRKLGERAAKCINDSNP 685



 Score =  199 bits (507), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 147/508 (28%), Positives = 234/508 (46%), Gaps = 87/508 (17%)

Query: 84   KTP---TTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARN 140
            K+P    TFL N L+S Y + G   DAR+VFD+IP  N FSYN +LS +A LG    AR 
Sbjct: 788  KSPFVAETFLLNTLVSAYARLGRLPDARRVFDEIPHPNTFSYNALLSAHARLGRPADARA 847

Query: 141  LFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEE 200
            LF  + + D  S+N +I   A+     + L F   +       N +SFA  L+ C   ++
Sbjct: 848  LFHAIPDPDQCSYNAVIAALAQHSRGADALLFLAAMHADDFVLNAYSFASALSACAAEKD 907

Query: 201  LKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSG 260
             +   QVH  V  +    +V I S+++D YAKC    +ARR+F+    R++++W +    
Sbjct: 908  SRTGVQVHALVSKSPHAKDVYIGSALLDMYAKCEWPEEARRVFEAMPERNIVSWNS---- 963

Query: 261  YAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTF 320
                                       LI  Y +NG   +AL LF  MM     P++ T 
Sbjct: 964  ---------------------------LITCYEQNGPVGEALVLFVSMMKAGFVPDEVTL 996

Query: 321  SSCLCACASIVSLKHGKQVHGFLIRTN-FRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTD 379
            +S + ACA + + + G+QVH  +++++ FR + ++ ++L+DMY+KCG     R VFD   
Sbjct: 997  ASVMSACAGLAADREGRQVHARVVKSDRFREDMVLSNALVDMYAKCGRTRAARCVFDRMA 1056

Query: 380  NK------------------------------ENSMLWNTMISALTQHGYDEQAIRLFHD 409
            ++                              +N + WN +I+A  Q+G +E+A+RLF  
Sbjct: 1057 SRSVVSETSLITGYARSANVEDAQMVFSQMVEKNVIAWNVLIAAYAQNGEEEEALRLFVR 1116

Query: 410  MVRSSVKPDKITLAVILNACTHSGLVQEGLTYF-----ESMTHDLGIIPNQEHHACLIEL 464
            + R SV P   T   +LNAC +   +Q G         E    D G   +      L+++
Sbjct: 1117 LKRESVWPTHYTYGNVLNACGNVADLQLGQQAHVHVLKEGFRFDFGPESDVFVGNSLVDM 1176

Query: 465  LAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRK-----VVDQLI--DQN 517
              + G  D      E+M    D+  WNA+     I G+   GR      + ++++   ++
Sbjct: 1177 YLKTGSIDDGAKVFERMA-ARDNVSWNAM-----IVGHAQNGRAKDALHLFERMLCSKES 1230

Query: 518  PQSSATHGLLSSIYSALGKGRLVEKVRQ 545
            P S    G+L    SA G   LVE+ R+
Sbjct: 1231 PDSVTMIGVL----SACGHSGLVEEGRR 1254



 Score =  193 bits (491), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 148/511 (28%), Positives = 243/511 (47%), Gaps = 39/511 (7%)

Query: 31  GQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFL 90
           G  SEA+S    +   GIR    T+A +L  CAE   L   +++H H+     ++    L
Sbjct: 130 GHPSEALSLFSNMNSLGIRPKDATMASVLSCCAECLDLCGARQLHGHIAKRDFQS-NVIL 188

Query: 91  SNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDV 150
              L+ +Y  C    DAR+ FD I   N  S+N ++  Y   GM   A ++F  M     
Sbjct: 189 GTALVDVYGNCFLLADARRAFDDILEPNAISWNVIVRRYHLAGMGDMAVDMFFRM----- 243

Query: 151 VSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQ 210
           +S     +GY  S AV              ++C + +          LEE    R +H  
Sbjct: 244 LSAGVRPLGYTVSHAV--------------LACRDNN---------ALEE---GRCIHAF 277

Query: 211 VLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESA 270
           VL  G+  +V + SS+VD YAKCG +  A+ LF+    +D++  T++VSG A  G +  A
Sbjct: 278 VLRHGYEHHVHVRSSVVDMYAKCGAMDAAQSLFNLAPMKDMVMSTSIVSGLASCGRIADA 337

Query: 271 SKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASI 330
            ++F  M E+N VSW  ++ GY R+     AL LF +M       +  T  S L AC  I
Sbjct: 338 KRVFEGMKERNLVSWNAMLTGYIRSMDLTGALLLFQQMRQETREFDAITLGSVLSACTGI 397

Query: 331 VSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQ--VFDLTDNKENSMLWN 388
           + +  G++VH F I+  F S+ I+ ++L+ MYSKCGCL    +  +F++   + +S  WN
Sbjct: 398 LDIGKGEEVHAFAIKCGFFSSPILKNALVRMYSKCGCLRSAERLLLFEMGSER-DSYSWN 456

Query: 389 TMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHD 448
           ++IS   +H   E A+     M +S V P++ T +  L AC +  L+++G+     M   
Sbjct: 457 SLISGYERHSMSEAALYALTKM-QSEVTPNQSTFSSALAACANIFLLKQGMQIHAYMIRK 515

Query: 449 LGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRK 508
            G   +    + LI++  +    D  +   E  P   D  LWN++   C   G  + G  
Sbjct: 516 -GYEIDDILRSVLIDMYCKCRQFDYSIRIFEARP-SRDVILWNSMIFGCAYSGKGEYGLD 573

Query: 509 VVDQLIDQNPQSSATHGLLSSIYSALGKGRL 539
           + D++  Q  ++ +    L ++ S + +G +
Sbjct: 574 LFDEMQKQGIKADSV-TFLGALVSCISEGHV 603



 Score =  159 bits (402), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 108/409 (26%), Positives = 185/409 (45%), Gaps = 71/409 (17%)

Query: 120 FSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRF 179
           F +N  +   A  G +  AR LFD M  RD  SWN +I   +++G   E L  +  +   
Sbjct: 86  FLFNRAIESLAACGSVADARELFDLMPLRDGGSWNAIITASSRAGHPSEALSLFSNMNSL 145

Query: 180 SISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDA 239
            I   + + A +L+ C +  +L   RQ+HG +    F SNV++ +++VD Y  C  L+DA
Sbjct: 146 GIRPKDATMASVLSCCAECLDLCGARQLHGHIAKRDFQSNVILGTALVDVYGNCFLLADA 205

Query: 240 RRLFDETDARDVLTWTTMVSGY--AKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGL 297
           RR FD+    + ++W  +V  Y  A +GDM                              
Sbjct: 206 RRAFDDILEPNAISWNVIVRRYHLAGMGDM------------------------------ 235

Query: 298 GQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSS 357
              A+++F RM+   +RP  +T S  + AC    +L+ G+ +H F++R  +  +  V SS
Sbjct: 236 ---AVDMFFRMLSAGVRPLGYTVSHAVLACRDNNALEEGRCIHAFVLRHGYEHHVHVRSS 292

Query: 358 LIDMYSKCGCLNDGRQVFDLTDNKE------------------------------NSMLW 387
           ++DMY+KCG ++  + +F+L   K+                              N + W
Sbjct: 293 VVDMYAKCGAMDAAQSLFNLAPMKDMVMSTSIVSGLASCGRIADAKRVFEGMKERNLVSW 352

Query: 388 NTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTH 447
           N M++   +      A+ LF  M + + + D ITL  +L+ACT    + +G     +   
Sbjct: 353 NAMLTGYIRSMDLTGALLLFQQMRQETREFDAITLGSVLSACTGILDIGKG-EEVHAFAI 411

Query: 448 DLGIIPNQEHHACLIELLAQAGC---SDQLMNQLEKMPYEHDSYLWNAL 493
             G   +      L+ + ++ GC   +++L+  L +M  E DSY WN+L
Sbjct: 412 KCGFFSSPILKNALVRMYSKCGCLRSAERLL--LFEMGSERDSYSWNSL 458



 Score =  135 bits (339), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 70/227 (30%), Positives = 127/227 (55%), Gaps = 1/227 (0%)

Query: 212  LVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESAS 271
            L + F++   + +++V AYA+ G L DARR+FDE    +  ++  ++S +A+LG    A 
Sbjct: 787  LKSPFVAETFLLNTLVSAYARLGRLPDARRVFDEIPHPNTFSYNALLSAHARLGRPADAR 846

Query: 272  KLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIV 331
             LF+ +P+ +  S+  +IA   ++  G  AL     M       N ++F+S L ACA+  
Sbjct: 847  ALFHAIPDPDQCSYNAVIAALAQHSRGADALLFLAAMHADDFVLNAYSFASALSACAAEK 906

Query: 332  SLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMI 391
              + G QVH  + ++    +  + S+L+DMY+KC    + R+VF+    + N + WN++I
Sbjct: 907  DSRTGVQVHALVSKSPHAKDVYIGSALLDMYAKCEWPEEARRVFEAMPER-NIVSWNSLI 965

Query: 392  SALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEG 438
            +   Q+G   +A+ LF  M+++   PD++TLA +++AC      +EG
Sbjct: 966  TCYEQNGPVGEALVLFVSMMKAGFVPDEVTLASVMSACAGLAADREG 1012



 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 122/537 (22%), Positives = 207/537 (38%), Gaps = 102/537 (18%)

Query: 9   GINRKNLPNNCLIQSFLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSL 68
           G  R +   N LI  +     +  +SEA        Q  +     T +  L  CA    L
Sbjct: 447 GSERDSYSWNSLISGY----ERHSMSEAALYALTKMQSEVTPNQSTFSSALAACANIFLL 502

Query: 69  KLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSG 128
           K G ++H ++ + +       L + LI MY KC       + FD                
Sbjct: 503 KQGMQIHAYM-IRKGYEIDDILRSVLIDMYCKC-------RQFD---------------- 538

Query: 129 YANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSF 188
                   ++  +F+    RDV+ WN+MI G A SG  E GL  +  +++  I  +  +F
Sbjct: 539 --------YSIRIFEARPSRDVILWNSMIFGCAYSGKGEYGLDLFDEMQKQGIKADSVTF 590

Query: 189 AGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCG---ELSD--ARRLF 243
            G L  C+    ++L R     ++    +  +     +++   K G   EL D      F
Sbjct: 591 LGALVSCISEGHVRLGRSYFTLMMDESIIPRIEHYECMIELLGKHGCMVELEDFVEHMPF 650

Query: 244 DETDARDVLTWTTMVS-----GYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLG 298
           + T A     W  +       G  KLG  E A+K  N+     PV +   +  Y  N  G
Sbjct: 651 EPTTA----MWLRIFDCCREYGNRKLG--ERAAKCINDSNPLTPVQFVATV-DYESNDGG 703

Query: 299 QKA------------------LE----------LFTRMMIL---RIRPNQHTFSSCLCAC 327
           ++A                  LE          L TR + +     R + H F S L A 
Sbjct: 704 REAESTSFSSEGEGCEELPFSLEGEASGSLPAPLTTRPLAIWYGMARHHHHHFVSHLRAS 763

Query: 328 ASIV-------SLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDN 380
           A +        +L   +  H   +++ F + T ++++L+  Y++ G L D R+VFD   +
Sbjct: 764 APLADLLRSAPNLPAARAAHARALKSPFVAETFLLNTLVSAYARLGRLPDARRVFDEIPH 823

Query: 381 KENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLT 440
             N+  +N ++SA  + G    A  LFH +      PD+ +   ++ A        + L 
Sbjct: 824 P-NTFSYNALLSAHARLGRPADARALFHAI----PDPDQCSYNAVIAALAQHSRGADALL 878

Query: 441 YFESMTHDLGIIPNQEH----HACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNAL 493
           +  +M  D  ++          AC  E  ++ G   Q+   + K P+  D Y+ +AL
Sbjct: 879 FLAAMHADDFVLNAYSFASALSACAAEKDSRTGV--QVHALVSKSPHAKDVYIGSAL 933



 Score = 52.4 bits (124), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 23/79 (29%), Positives = 45/79 (56%), Gaps = 1/79 (1%)

Query: 352 TIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMV 411
           T + +  I+  + CG + D R++FDL   ++    WN +I+A ++ G+  +A+ LF +M 
Sbjct: 85  TFLFNRAIESLAACGSVADARELFDLMPLRDGGS-WNAIITASSRAGHPSEALSLFSNMN 143

Query: 412 RSSVKPDKITLAVILNACT 430
              ++P   T+A +L+ C 
Sbjct: 144 SLGIRPKDATMASVLSCCA 162


>gi|413918370|gb|AFW58302.1| hypothetical protein ZEAMMB73_070872 [Zea mays]
          Length = 688

 Score =  353 bits (907), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 193/589 (32%), Positives = 325/589 (55%), Gaps = 43/589 (7%)

Query: 16  PNNCLIQSFLSLISK---GQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGK 72
           P+ C   + ++ +++   G   +A+  L  +      L A + A  L  CA  K L+ G+
Sbjct: 112 PDQCSYNAVVAALARHGRGHAGDALRFLAAMHADDFVLNAYSFASALSACAAEKDLRTGE 171

Query: 73  RVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANL 132
           +VH  L           +   L+ MY KC   VDAR+VFD                    
Sbjct: 172 QVH-GLVARSPHADDVHIGTALVDMYAKCERPVDARRVFDA------------------- 211

Query: 133 GMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGIL 192
                       M ER+VVSWN++I  Y ++G V E L  +  +       +E + + ++
Sbjct: 212 ------------MPERNVVSWNSLITCYEQNGPVGEALVLFVEMMATGFFPDEVTLSSVM 259

Query: 193 TICVKLEELKLTRQVHGQVLVTGFL-SNVVISSSIVDAYAKCGELSDARRLFDETDARDV 251
           + C  L   +  RQVH  ++    L  ++V+++++VD YAKCG   +AR +FD   +R V
Sbjct: 260 SACAGLAAEREGRQVHAHMVKRDRLRDDMVLNNALVDMYAKCGRTWEARCIFDSMPSRSV 319

Query: 252 LTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMIL 311
           ++ T++++GYAK  ++E A  +F++M EKN ++W  LIA Y +NG  ++A+ LF ++   
Sbjct: 320 VSETSILAGYAKSANVEDAQVVFSQMVEKNVIAWNVLIAAYAQNGEEEEAIRLFVQLKRD 379

Query: 312 RIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFR------SNTIVMSSLIDMYSKC 365
            I P  +T+ + L AC +I  L+ G+Q H  +++  FR      S+  V +SL+DMY K 
Sbjct: 380 SIWPTHYTYGNVLNACGNIAVLQLGQQAHVHVLKEGFRFDFGPESDVFVGNSLVDMYLKT 439

Query: 366 GCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVI 425
           G ++DG +VF+    ++N + WN MI    Q+G  + A+ LF  M+ S+  PD +T+  +
Sbjct: 440 GSIDDGAKVFERMAARDN-VSWNAMIVGYAQNGRAKDALHLFERMLCSNENPDSVTMIGV 498

Query: 426 LNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEH 485
           L+AC HSGLV EG  +F  MT D GI P+++H+ C+++LL +AG   +    ++ MP E 
Sbjct: 499 LSACGHSGLVDEGRRHFHFMTEDHGITPSRDHYTCMVDLLGRAGHLKEAEELIKDMPTEP 558

Query: 486 DSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQ 545
           DS LW +L G CR+H N+++G +   +L + +P++S  + LLS++Y+ +GK   V +VR+
Sbjct: 559 DSVLWASLLGACRLHKNVELGERTAGRLFELDPENSGPYVLLSNMYAEMGKWADVFRVRR 618

Query: 546 LINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQM 594
            + +R   K+   SWIEI +K++ F   D+ HP R+ ++S L  +  +M
Sbjct: 619 SMKDRGVSKQPGCSWIEIGSKMNVFLARDNRHPCRNEIHSTLRIIQMEM 667



 Score =  216 bits (551), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 151/510 (29%), Positives = 240/510 (47%), Gaps = 89/510 (17%)

Query: 84  KTPT---TFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARN 140
           K+P    TFL N L+S Y + G   +AR+VFD IP++N FSYN +LS YA LG    AR 
Sbjct: 45  KSPVAGETFLLNTLVSTYARLGRLREARRVFDGIPLRNTFSYNALLSAYARLGRPDEARA 104

Query: 141 LFDNMAERDVVSWNTMIIGYAKSGAVEEG--LKFYKVLRRFSISCNEFSFAGILTICVKL 198
           LF+ + + D  S+N ++   A+ G    G  L+F   +       N +SFA  L+ C   
Sbjct: 105 LFEAIPDPDQCSYNAVVAALARHGRGHAGDALRFLAAMHADDFVLNAYSFASALSACAAE 164

Query: 199 EELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMV 258
           ++L+   QVHG V  +    +V I +++VD YAKC    DARR+FD    R+V++W +++
Sbjct: 165 KDLRTGEQVHGLVARSPHADDVHIGTALVDMYAKCERPVDARRVFDAMPERNVVSWNSLI 224

Query: 259 SGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQH 318
           + Y +                               NG   +AL LF  MM     P++ 
Sbjct: 225 TCYEQ-------------------------------NGPVGEALVLFVEMMATGFFPDEV 253

Query: 319 TFSSCLCACASIVSLKHGKQVHGFLI-RTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDL 377
           T SS + ACA + + + G+QVH  ++ R   R + ++ ++L+DMY+KCG   + R +FD 
Sbjct: 254 TLSSVMSACAGLAAEREGRQVHAHMVKRDRLRDDMVLNNALVDMYAKCGRTWEARCIFDS 313

Query: 378 TDNK------------------------------ENSMLWNTMISALTQHGYDEQAIRLF 407
             ++                              +N + WN +I+A  Q+G +E+AIRLF
Sbjct: 314 MPSRSVVSETSILAGYAKSANVEDAQVVFSQMVEKNVIAWNVLIAAYAQNGEEEEAIRLF 373

Query: 408 HDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYF-----ESMTHDLGIIPNQEHHACLI 462
             + R S+ P   T   +LNAC +  ++Q G         E    D G   +      L+
Sbjct: 374 VQLKRDSIWPTHYTYGNVLNACGNIAVLQLGQQAHVHVLKEGFRFDFGPESDVFVGNSLV 433

Query: 463 ELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRK-----VVDQLI--D 515
           ++  + G  D      E+M    D+  WNA+     I G    GR      + ++++  +
Sbjct: 434 DMYLKTGSIDDGAKVFERMA-ARDNVSWNAM-----IVGYAQNGRAKDALHLFERMLCSN 487

Query: 516 QNPQSSATHGLLSSIYSALGKGRLVEKVRQ 545
           +NP S    G+L    SA G   LV++ R+
Sbjct: 488 ENPDSVTMIGVL----SACGHSGLVDEGRR 513



 Score =  149 bits (377), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 89/319 (27%), Positives = 163/319 (51%), Gaps = 4/319 (1%)

Query: 201 LKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSG 260
           L   R  HG VL +       + +++V  YA+ G L +ARR+FD    R+  ++  ++S 
Sbjct: 33  LPGARAAHGCVLKSPVAGETFLLNTLVSTYARLGRLREARRVFDGIPLRNTFSYNALLSA 92

Query: 261 YAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQ--KALELFTRMMILRIRPNQH 318
           YA+LG  + A  LF  +P+ +  S+  ++A   R+G G    AL     M       N +
Sbjct: 93  YARLGRPDEARALFEAIPDPDQCSYNAVVAALARHGRGHAGDALRFLAAMHADDFVLNAY 152

Query: 319 TFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLT 378
           +F+S L ACA+   L+ G+QVHG + R+    +  + ++L+DMY+KC    D R+VFD  
Sbjct: 153 SFASALSACAAEKDLRTGEQVHGLVARSPHADDVHIGTALVDMYAKCERPVDARRVFDAM 212

Query: 379 DNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEG 438
             + N + WN++I+   Q+G   +A+ LF +M+ +   PD++TL+ +++AC      +EG
Sbjct: 213 PER-NVVSWNSLITCYEQNGPVGEALVLFVEMMATGFFPDEVTLSSVMSACAGLAAEREG 271

Query: 439 LTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCR 498
                 M     +  +   +  L+++ A+ G + +     + MP        + L G  +
Sbjct: 272 RQVHAHMVKRDRLRDDMVLNNALVDMYAKCGRTWEARCIFDSMPSRSVVSETSILAGYAK 331

Query: 499 IHGNIDMGRKVVDQLIDQN 517
              N++  + V  Q++++N
Sbjct: 332 -SANVEDAQVVFSQMVEKN 349



 Score = 48.5 bits (114), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 42/194 (21%), Positives = 89/194 (45%), Gaps = 11/194 (5%)

Query: 329 SIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWN 388
           S  SL   +  HG ++++     T ++++L+  Y++ G L + R+VFD    + N+  +N
Sbjct: 29  SAPSLPGARAAHGCVLKSPVAGETFLLNTLVSTYARLGRLREARRVFDGIPLR-NTFSYN 87

Query: 389 TMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEG--LTYFESMT 446
            ++SA  + G  ++A  LF  +      PD+ +   ++ A    G    G  L +  +M 
Sbjct: 88  ALLSAYARLGRPDEARALFEAI----PDPDQCSYNAVVAALARHGRGHAGDALRFLAAMH 143

Query: 447 HDLGIIPNQEHHACLIELLAQAG--CSDQLMNQLEKMPYEHDSYLWNALHGV-CRIHGNI 503
            D  ++      + L    A+      +Q+   + + P+  D ++  AL  +  +    +
Sbjct: 144 ADDFVLNAYSFASALSACAAEKDLRTGEQVHGLVARSPHADDVHIGTALVDMYAKCERPV 203

Query: 504 DMGRKVVDQLIDQN 517
           D  R+V D + ++N
Sbjct: 204 D-ARRVFDAMPERN 216


>gi|449457516|ref|XP_004146494.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g44230-like [Cucumis sativus]
          Length = 650

 Score =  353 bits (907), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 166/442 (37%), Positives = 270/442 (61%), Gaps = 5/442 (1%)

Query: 153 WNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQ-V 211
           W  MI GYA  G + E   FY  +RR  +    F+F+ +   C     + L +QVH Q +
Sbjct: 110 WTAMIRGYALQGLLSESTNFYTRMRRDGVGPVSFTFSALFKACGAALNMDLGKQVHAQTI 169

Query: 212 LVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESAS 271
           L+ GF S++ + +S++D Y KCG L  AR++FDE   RDV++WT ++  YAK GDMESAS
Sbjct: 170 LIGGFASDLYVGNSMIDLYVKCGFLGCARKVFDEMSERDVVSWTELIVAYAKYGDMESAS 229

Query: 272 KLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIV 331
            LF+++P K+ V+WT ++ GY +NG  ++ALE F +M  + +  ++ T +  + ACA + 
Sbjct: 230 GLFDDLPLKDMVAWTAMVTGYAQNGRPKEALEYFQKMQDVGMETDEVTLAGVISACAQLG 289

Query: 332 SLKHGKQVHGFLIRTNF--RSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNT 389
           ++KH   +     R+ F    N +V S+LIDMYSKCG  ++  +VF++   + N   +++
Sbjct: 290 AVKHANWIRDIAERSGFGPSGNVVVGSALIDMYSKCGSPDEAYKVFEVMKER-NVFSYSS 348

Query: 390 MISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDL 449
           MI     HG    A++LFHDM+++ ++P+K+T   IL+AC+H+GLV++G   F  M    
Sbjct: 349 MILGYAMHGRAHSALQLFHDMLKTEIRPNKVTFIGILSACSHAGLVEQGRQLFAKMEKFF 408

Query: 450 GIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKV 509
           G+ P+ +H+AC+++LL +AGC ++ ++ ++ MP E +  +W AL G CRIHGN D+ +  
Sbjct: 409 GVAPSPDHYACMVDLLGRAGCLEEALDLVKTMPMEPNGGVWGALLGACRIHGNPDIAQIA 468

Query: 510 VDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIEN-KVH 568
            ++L    P     + LLS+IY++ G+   V K+R++I E+ FKK    SW E +N ++H
Sbjct: 469 ANELFKLEPNGIGNYILLSNIYASAGRWEEVSKLRKVIREKGFKKNPGCSWFEGKNGEIH 528

Query: 569 AFSVSDSLHPMRDVLYSVLEQL 590
            F   D+ HP    +   L+QL
Sbjct: 529 DFFAGDTTHPRSSEIRQALKQL 550



 Score =  172 bits (435), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 100/389 (25%), Positives = 192/389 (49%), Gaps = 35/389 (8%)

Query: 14  NLPNNCLIQSFLSLIS-KGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGK 72
           N PN  L  + +   + +G LSE+ +    + + G+   + T + + + C  + ++ LGK
Sbjct: 103 NYPNPFLWTAMIRGYALQGLLSESTNFYTRMRRDGVGPVSFTFSALFKACGAALNMDLGK 162

Query: 73  RVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANL 132
           +VH    L        ++ N +I +Y KCG    ARKVFD++  +++ S+  ++  YA  
Sbjct: 163 QVHAQTILIGGFASDLYVGNSMIDLYVKCGFLGCARKVFDEMSERDVVSWTELIVAYAKY 222

Query: 133 GMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGIL 192
           G M+ A  LFD++  +D+V+W  M+ GYA++G  +E L++++ ++   +  +E + AG++
Sbjct: 223 GDMESASGLFDDLPLKDMVAWTAMVTGYAQNGRPKEALEYFQKMQDVGMETDEVTLAGVI 282

Query: 193 TICVKLEELKLTRQVHGQVLVTGF--LSNVVISSSIVDAYAKCGELSDARRLFDETDARD 250
           + C +L  +K    +      +GF    NVV+ S+++D Y+KCG   +A ++F+    R+
Sbjct: 283 SACAQLGAVKHANWIRDIAERSGFGPSGNVVVGSALIDMYSKCGSPDEAYKVFEVMKERN 342

Query: 251 VLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMI 310
           V ++++M+ GYA  G   SA                               L+LF  M+ 
Sbjct: 343 VFSYSSMILGYAMHGRAHSA-------------------------------LQLFHDMLK 371

Query: 311 LRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIR-TNFRSNTIVMSSLIDMYSKCGCLN 369
             IRPN+ TF   L AC+    ++ G+Q+   + +      +    + ++D+  + GCL 
Sbjct: 372 TEIRPNKVTFIGILSACSHAGLVEQGRQLFAKMEKFFGVAPSPDHYACMVDLLGRAGCLE 431

Query: 370 DGRQVFDLTDNKENSMLWNTMISALTQHG 398
           +   +      + N  +W  ++ A   HG
Sbjct: 432 EALDLVKTMPMEPNGGVWGALLGACRIHG 460



 Score =  103 bits (256), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 81/313 (25%), Positives = 136/313 (43%), Gaps = 47/313 (15%)

Query: 273 LFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVS 332
           +F ++   NP  WT +I GY   GL  ++   +TRM    + P   TFS+   AC + ++
Sbjct: 98  VFGQVNYPNPFLWTAMIRGYALQGLLSESTNFYTRMRRDGVGPVSFTFSALFKACGAALN 157

Query: 333 LKHGKQVHG-FLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKE--------- 382
           +  GKQVH   ++   F S+  V +S+ID+Y KCG L   R+VFD    ++         
Sbjct: 158 MDLGKQVHAQTILIGGFASDLYVGNSMIDLYVKCGFLGCARKVFDEMSERDVVSWTELIV 217

Query: 383 ---------------------NSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKIT 421
                                + + W  M++   Q+G  ++A+  F  M    ++ D++T
Sbjct: 218 AYAKYGDMESASGLFDDLPLKDMVAWTAMVTGYAQNGRPKEALEYFQKMQDVGMETDEVT 277

Query: 422 LAVILNACTHSGLVQEGLTYFESMTHDLGIIP--NQEHHACLIELLAQAGCSDQLMNQLE 479
           LA +++AC   G V+    +   +    G  P  N    + LI++ ++ G  D+     E
Sbjct: 278 LAGVISACAQLGAVKHA-NWIRDIAERSGFGPSGNVVVGSALIDMYSKCGSPDEAYKVFE 336

Query: 480 KMP----YEHDSY-LWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSAL 534
            M     + + S  L  A+HG  R H  + +   ++   I  N  +         I SA 
Sbjct: 337 VMKERNVFSYSSMILGYAMHG--RAHSALQLFHDMLKTEIRPNKVT------FIGILSAC 388

Query: 535 GKGRLVEKVRQLI 547
               LVE+ RQL 
Sbjct: 389 SHAGLVEQGRQLF 401


>gi|328774755|gb|AEB39777.1| pentatricopeptide repeat protein 91 [Funaria hygrometrica]
          Length = 890

 Score =  353 bits (906), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 182/572 (31%), Positives = 319/572 (55%), Gaps = 30/572 (5%)

Query: 32  QLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPT-TFL 90
           +L+EA    + + Q GI   A T   +L  C   ++L  G+R+H H+  ++R   T   +
Sbjct: 260 KLNEAFELYEKMLQAGISPNAVTFVSLLNSCNTPEALNRGRRIHSHI--SERGLETDVVV 317

Query: 91  SNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDV 150
           +N LI+MY KC    DAR+ FD++  +++ S++ M++GYA                    
Sbjct: 318 ANALITMYCKCNCIQDARETFDRMSKRDVISWSAMIAGYAQS------------------ 359

Query: 151 VSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQ 210
                   GY    +++E  +  + +RR  +  N+ +F  IL  C     L+  RQ+H +
Sbjct: 360 --------GYQDKESLDEVFQLLERMRREGVFPNKVTFMSILKACSVHGALEQGRQIHAE 411

Query: 211 VLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESA 270
           +   GF S+  + ++I + YAKCG + +A ++F + + ++V+ W ++++ Y K GD+ SA
Sbjct: 412 ISKVGFESDRSLQTAIFNMYAKCGSIYEAEQVFSKMENKNVVAWASLLTMYIKCGDLTSA 471

Query: 271 SKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASI 330
            K+F+EM  +N VSW  +IAGY ++G   K  EL + M +   +P++ T  S L AC ++
Sbjct: 472 EKVFSEMSTRNVVSWNLMIAGYAQSGDIAKVFELLSSMKVEGFQPDRVTIISILEACGAL 531

Query: 331 VSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTM 390
            +L+ GK VH   ++    S+T+V +SLI MYSKCG + + R VFD   N+ +++ WN M
Sbjct: 532 SALERGKLVHAEAVKLGLESDTVVATSLIGMYSKCGEVTEARTVFDKISNR-DTVAWNAM 590

Query: 391 ISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLG 450
           ++   QHG   +A+ LF  M++  V P++IT   +++AC  +GLVQEG   F  M  D  
Sbjct: 591 LAGYGQHGIGPEAVDLFKRMLKERVPPNEITFTAVISACGRAGLVQEGREIFRIMQEDFR 650

Query: 451 IIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVV 510
           + P ++H+ C+++LL +AG   +    +++MP E D  +W+AL G C+ H N+ +     
Sbjct: 651 MKPGKQHYGCMVDLLGRAGRLQEAEEFIQRMPCEPDISVWHALLGACKSHDNVQLAEWAA 710

Query: 511 DQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAF 570
             ++   P +++ +  LS+IY+  G+     KVR++++++  KK++  S IEI+ ++H F
Sbjct: 711 HHILRLEPSNASVYVTLSNIYAQAGRWDDSTKVRKVMDDKGLKKDRGESSIEIDGRIHTF 770

Query: 571 SVSDSLHPMRDVLYSVLEQLAGQMGEDAPSLD 602
              D  HP  D +++ LE L  +M E   + D
Sbjct: 771 VAEDCAHPEIDSIHAELEMLTKEMKEAGYTPD 802



 Score =  177 bits (450), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 148/627 (23%), Positives = 262/627 (41%), Gaps = 145/627 (23%)

Query: 27  LISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTP 86
           L   G+L EAI  L ++ QRG+ + + T   I++ CA+ +  + GK VH  L        
Sbjct: 53  LCKAGRLKEAIQLLGIIKQRGLLVNSNTYGCIIEHCAKLRRFEDGKMVHKQLDELGLAID 112

Query: 87  TTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYA---------------- 130
             +L N LI+ Y K G      +VF ++ ++++ ++++M++ YA                
Sbjct: 113 -IYLGNSLINFYSKFGDVASVEQVFRRMTLRDVVTWSSMIAAYAGNNHPAKAFDTFERMK 171

Query: 131 -------------------NLGMMKHARNLFDNMA----ERDVVSWNTMIIGYAKSGAVE 167
                              N  M++ AR +   +     E DV     +I  Y+K G + 
Sbjct: 172 DANIEPNRITFLSILKACNNYSMLEKAREIHTVVKASGMETDVAVATALITMYSKCGEIS 231

Query: 168 -------------------------------EGLKFYKVLRRFSISCNEFSFAGILTICV 196
                                          E  + Y+ + +  IS N  +F  +L  C 
Sbjct: 232 LACEIFQKMKERNVVSWTAIIQANAQHRKLNEAFELYEKMLQAGISPNAVTFVSLLNSCN 291

Query: 197 KLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTT 256
             E L   R++H  +   G  ++VV++++++  Y KC  + DAR  FD    RDV++W+ 
Sbjct: 292 TPEALNRGRRIHSHISERGLETDVVVANALITMYCKCNCIQDARETFDRMSKRDVISWSA 351

Query: 257 MVSGYAKLG--DMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIR 314
           M++GYA+ G  D ES  ++F                            +L  RM    + 
Sbjct: 352 MIAGYAQSGYQDKESLDEVF----------------------------QLLERMRREGVF 383

Query: 315 PNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQV 374
           PN+ TF S L AC+   +L+ G+Q+H  + +  F S+  + +++ +MY+KCG + +  QV
Sbjct: 384 PNKVTFMSILKACSVHGALEQGRQIHAEISKVGFESDRSLQTAIFNMYAKCGSIYEAEQV 443

Query: 375 FDLTDNK------------------------------ENSMLWNTMISALTQHGYDEQAI 404
           F   +NK                               N + WN MI+   Q G   +  
Sbjct: 444 FSKMENKNVVAWASLLTMYIKCGDLTSAEKVFSEMSTRNVVSWNLMIAGYAQSGDIAKVF 503

Query: 405 RLFHDMVRSSVKPDKITLAVILNACTHSGLVQEG-LTYFESMTHDLGIIPNQEHHACLIE 463
            L   M     +PD++T+  IL AC     ++ G L + E++   LG+  +      LI 
Sbjct: 504 ELLSSMKVEGFQPDRVTIISILEACGALSALERGKLVHAEAV--KLGLESDTVVATSLIG 561

Query: 464 LLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVD----QLIDQNPQ 519
           + ++ G   +     +K+    D+  WNA+      HG   +G + VD     L ++ P 
Sbjct: 562 MYSKCGEVTEARTVFDKIS-NRDTVAWNAMLAGYGQHG---IGPEAVDLFKRMLKERVPP 617

Query: 520 SSATHGLLSSIYSALGKGRLVEKVRQL 546
           +  T    +++ SA G+  LV++ R++
Sbjct: 618 NEIT---FTAVISACGRAGLVQEGREI 641



 Score =  166 bits (421), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 99/400 (24%), Positives = 197/400 (49%), Gaps = 37/400 (9%)

Query: 30  KGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTF 89
           K  L E    L+ + + G+     T   IL+ C+   +L+ G+++H  +     ++  + 
Sbjct: 364 KESLDEVFQLLERMRREGVFPNKVTFMSILKACSVHGALEQGRQIHAEISKVGFESDRS- 422

Query: 90  LSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERD 149
           L   + +MY KCGS  +A +VF K+  KN+ ++ ++L+ Y   G +  A  +F  M+ R+
Sbjct: 423 LQTAIFNMYAKCGSIYEAEQVFSKMENKNVVAWASLLTMYIKCGDLTSAEKVFSEMSTRN 482

Query: 150 VVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHG 209
           VVSWN MI GYA+SG + +  +    ++      +  +   IL  C  L  L+  + VH 
Sbjct: 483 VVSWNLMIAGYAQSGDIAKVFELLSSMKVEGFQPDRVTIISILEACGALSALERGKLVHA 542

Query: 210 QVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMES 269
           + +  G  S+ V+++S++  Y+KCGE+++AR +FD+   RD + W  M++GY +      
Sbjct: 543 EAVKLGLESDTVVATSLIGMYSKCGEVTEARTVFDKISNRDTVAWNAMLAGYGQ------ 596

Query: 270 ASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACAS 329
                                    +G+G +A++LF RM+  R+ PN+ TF++ + AC  
Sbjct: 597 -------------------------HGIGPEAVDLFKRMLKERVPPNEITFTAVISACGR 631

Query: 330 IVSLKHGKQVHGFLIRTNFR--SNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLW 387
              ++ G+++   +++ +FR          ++D+  + G L +  +       + +  +W
Sbjct: 632 AGLVQEGREIFR-IMQEDFRMKPGKQHYGCMVDLLGRAGRLQEAEEFIQRMPCEPDISVW 690

Query: 388 NTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILN 427
           + ++ A   H   + A    H ++R  ++P   ++ V L+
Sbjct: 691 HALLGACKSHDNVQLAEWAAHHILR--LEPSNASVYVTLS 728


>gi|359495784|ref|XP_003635090.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 616

 Score =  353 bits (905), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 174/476 (36%), Positives = 295/476 (61%), Gaps = 1/476 (0%)

Query: 119 LFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRR 178
           +F  N +++ Y   G++  AR LFD++ ++ +VSWN+MI GYA  G  +E    ++ +R 
Sbjct: 123 VFVQNALIAVYVVCGLIHCARKLFDDITDKTLVSWNSMIGGYAHMGNWKEAFLLFRKMRE 182

Query: 179 FSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSD 238
           + +  + F+F  +L++C +  +L L R VH  + +TG   ++++ +++VD YAKCG L  
Sbjct: 183 WGMEPDGFTFVNLLSVCSQSRDLDLGRYVHFCIEITGVKIDIIVRNALVDMYAKCGNLHS 242

Query: 239 ARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLG 298
           A+ +FD T  ++V++WT+M+S YA+ G +E A ++F++MP KN VSW ++I+ Y R G  
Sbjct: 243 AQAIFDRTQEKNVVSWTSMISAYAQHGSIEVARQIFDQMPGKNVVSWNSMISCYLREGQY 302

Query: 299 QKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSL 358
           ++AL+LF +M   R+ P++ T  S L AC+ +  L  GK++H +++         + +SL
Sbjct: 303 REALDLFNKMRNSRVVPDEATLVSILAACSQLGDLVMGKKIHNYILSNKGAYGVTLYNSL 362

Query: 359 IDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPD 418
           IDMY+KCG +     +F L    +N + WN +I AL  HG   +AI+LF +M      PD
Sbjct: 363 IDMYAKCGPVVTALDIF-LEMPGKNLVSWNVIIGALALHGCGLEAIKLFEEMQADGTLPD 421

Query: 419 KITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQL 478
           +ITL  +L+AC+HSGLV  GL YF+ M     +    EH+AC+++LL + G   + +  +
Sbjct: 422 EITLTGLLSACSHSGLVDMGLYYFDRMGVIYRVPREIEHYACMVDLLGRGGLLGEAIELI 481

Query: 479 EKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGR 538
            +MP + D  +W AL G CRIHGN+++G++++ QL++  P S   + L+S+IY    +  
Sbjct: 482 GRMPMKPDVVVWGALLGACRIHGNVEIGKQILKQLLELEPHSGGLYVLISNIYWEAQRWE 541

Query: 539 LVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQM 594
            V+K+R+L+ +R  KK +AIS IEI+  ++ F V D  H +   +Y++L+QL   +
Sbjct: 542 DVKKIRKLMIDRGIKKGRAISSIEIDGCIYEFMVDDKRHKISSSIYAMLDQLTDHL 597



 Score =  156 bits (394), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 107/415 (25%), Positives = 198/415 (47%), Gaps = 13/415 (3%)

Query: 31  GQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFL 90
           G   EA      + + G+     T   +L  C++S+ L LG+ VH  +++T  K     +
Sbjct: 168 GNWKEAFLLFRKMREWGMEPDGFTFVNLLSVCSQSRDLDLGRYVHFCIEITGVKI-DIIV 226

Query: 91  SNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDV 150
            N L+ MY KCG+   A+ +FD+   KN+ S+ +M+S YA  G ++ AR +FD M  ++V
Sbjct: 227 RNALVDMYAKCGNLHSAQAIFDRTQEKNVVSWTSMISAYAQHGSIEVARQIFDQMPGKNV 286

Query: 151 VSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQ 210
           VSWN+MI  Y + G   E L  +  +R   +  +E +   IL  C +L +L + +++H  
Sbjct: 287 VSWNSMISCYLREGQYREALDLFNKMRNSRVVPDEATLVSILAACSQLGDLVMGKKIHNY 346

Query: 211 VLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESA 270
           +L       V + +S++D YAKCG +  A  +F E   +++++W  ++   A  G    A
Sbjct: 347 ILSNKGAYGVTLYNSLIDMYAKCGPVVTALDIFLEMPGKNLVSWNVIIGALALHGCGLEA 406

Query: 271 SKLFNEMPE----KNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCA 326
            KLF EM       + ++ T L++  + +GL    L  F RM ++   P +    +C+  
Sbjct: 407 IKLFEEMQADGTLPDEITLTGLLSACSHSGLVDMGLYYFDRMGVIYRVPREIEHYACMVD 466

Query: 327 CASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVF-DLTDNKENSM 385
                 L    +    + R   + + +V  +L+      G +  G+Q+   L + + +S 
Sbjct: 467 LLGRGGLL--GEAIELIGRMPMKPDVVVWGALLGACRIHGNVEIGKQILKQLLELEPHSG 524

Query: 386 LWNTMISAL---TQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQE 437
               +IS +    Q   D + IR    M+   +K  +   ++ ++ C +  +V +
Sbjct: 525 GLYVLISNIYWEAQRWEDVKKIRKL--MIDRGIKKGRAISSIEIDGCIYEFMVDD 577



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 103/400 (25%), Positives = 182/400 (45%), Gaps = 65/400 (16%)

Query: 133 GMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGIL 192
           G +++A+ +FD + + +   +N++I GY+ S    + +  ++ +    +S NEF+   +L
Sbjct: 36  GDLQYAQRMFDQIPQPNKFMYNSLIRGYSNSDDPIDAVLLFRRMICSGLSPNEFTLPFVL 95

Query: 193 TICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVL 252
             C           VHG  +  G  S V + ++++  Y  CG +  AR+LFD+   + ++
Sbjct: 96  KACGCKSAYWEAVLVHGLAIKLGIGSLVFVQNALIAVYVVCGLIHCARKLFDDITDKTLV 155

Query: 253 TWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILR 312
           +W +M+ GYA +G+ + A  LF +M E     W                           
Sbjct: 156 SWNSMIGGYAHMGNWKEAFLLFRKMRE-----WG-------------------------- 184

Query: 313 IRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGR 372
           + P+  TF + L  C+    L  G+ VH  +  T  + + IV ++L+DMY+KCG L+  +
Sbjct: 185 MEPDGFTFVNLLSVCSQSRDLDLGRYVHFCIEITGVKIDIIVRNALVDMYAKCGNLHSAQ 244

Query: 373 QVFDLTDNKENSMLWNTMISALTQHG--------YDE----------------------- 401
            +FD T  K N + W +MISA  QHG        +D+                       
Sbjct: 245 AIFDRTQEK-NVVSWTSMISAYAQHGSIEVARQIFDQMPGKNVVSWNSMISCYLREGQYR 303

Query: 402 QAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACL 461
           +A+ LF+ M  S V PD+ TL  IL AC+  G +  G      +  + G      +++ L
Sbjct: 304 EALDLFNKMRNSRVVPDEATLVSILAACSQLGDLVMGKKIHNYILSNKGAYGVTLYNS-L 362

Query: 462 IELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHG 501
           I++ A+ G     ++   +MP + +   WN + G   +HG
Sbjct: 363 IDMYAKCGPVVTALDIFLEMPGK-NLVSWNVIIGALALHG 401



 Score =  102 bits (254), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 69/257 (26%), Positives = 122/257 (47%), Gaps = 5/257 (1%)

Query: 265 GDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCL 324
           GD++ A ++F+++P+ N   + +LI GY+ +     A+ LF RM+   + PN+ T    L
Sbjct: 36  GDLQYAQRMFDQIPQPNKFMYNSLIRGYSNSDDPIDAVLLFRRMICSGLSPNEFTLPFVL 95

Query: 325 CACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVF-DLTDNKEN 383
            AC    +      VHG  I+    S   V ++LI +Y  CG ++  R++F D+TD    
Sbjct: 96  KACGCKSAYWEAVLVHGLAIKLGIGSLVFVQNALIAVYVVCGLIHCARKLFDDITDKTLV 155

Query: 384 SMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFE 443
           S  WN+MI      G  ++A  LF  M    ++PD  T   +L+ C+ S  +  G  Y  
Sbjct: 156 S--WNSMIGGYAHMGNWKEAFLLFRKMREWGMEPDGFTFVNLLSVCSQSRDLDLG-RYVH 212

Query: 444 SMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNI 503
                 G+  +      L+++ A+ G         ++   E +   W ++      HG+I
Sbjct: 213 FCIEITGVKIDIIVRNALVDMYAKCGNLHSAQAIFDRTQ-EKNVVSWTSMISAYAQHGSI 271

Query: 504 DMGRKVVDQLIDQNPQS 520
           ++ R++ DQ+  +N  S
Sbjct: 272 EVARQIFDQMPGKNVVS 288



 Score = 65.9 bits (159), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 47/160 (29%), Positives = 78/160 (48%), Gaps = 8/160 (5%)

Query: 18  NCLIQSFLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLH 77
           N +I  +L    +GQ  EA+   + +    +     TL  IL  C++   L +GK++H +
Sbjct: 290 NSMISCYLR---EGQYREALDLFNKMRNSRVVPDEATLVSILAACSQLGDLVMGKKIHNY 346

Query: 78  LKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKH 137
           + L+ +      L N LI MY KCG  V A  +F ++P KNL S+N ++   A  G    
Sbjct: 347 I-LSNKGAYGVTLYNSLIDMYAKCGPVVTALDIFLEMPGKNLVSWNVIIGALALHGCGLE 405

Query: 138 ARNLFDNMAER----DVVSWNTMIIGYAKSGAVEEGLKFY 173
           A  LF+ M       D ++   ++   + SG V+ GL ++
Sbjct: 406 AIKLFEEMQADGTLPDEITLTGLLSACSHSGLVDMGLYYF 445


>gi|147859209|emb|CAN83551.1| hypothetical protein VITISV_001173 [Vitis vinifera]
          Length = 728

 Score =  352 bits (902), Expect = 4e-94,   Method: Compositional matrix adjust.
 Identities = 194/563 (34%), Positives = 310/563 (55%), Gaps = 7/563 (1%)

Query: 35  EAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLS--N 92
           EA+     L + G+R    T   +++ C E     LG  +   L L  +     +LS  N
Sbjct: 167 EALKLFFRLLESGVRPNDVTFTSVVRACGELGDFGLGMSI---LGLVVKAGFEHYLSVSN 223

Query: 93  HLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVS 152
            LI++  + G    AR+VFD++  +++ S+  +L  Y   G ++ AR +FD M ER+ +S
Sbjct: 224 SLITLSLRMGEIDLARRVFDRMEKRDVVSWTAILDAYVETGDLREARRIFDEMPERNEIS 283

Query: 153 WNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVL 212
           W+ MI  Y++SG  EE LK +  + +     N   FA  L+    L  L     +HG V 
Sbjct: 284 WSAMIARYSQSGYAEEALKLFSKMVQEGFKPNISCFACTLSALASLRALSAGINIHGHVT 343

Query: 213 VTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASK 272
             G   +V I SS++D Y KCG+  D R +FD    ++V+ W +MV GY+  G +E   +
Sbjct: 344 KIGIDKDVFIGSSLIDLYCKCGKPDDGRLVFDLILEKNVVCWNSMVGGYSINGRLEEXEE 403

Query: 273 LFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVS 332
           LF  +PEKN  SW T+JAGY  N   +K LE+F  +++    PN+ TFSS LCACASI S
Sbjct: 404 LFELIPEKNDXSWGTIJAGYLENEQCEKVLEVFNTLLVSGQTPNKSTFSSVLCACASIAS 463

Query: 333 LKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMIS 392
           L  G  VHG +I+   + +  V ++L DMY+KCG +   +QVF+    K N + W  MI 
Sbjct: 464 LDKGMNVHGKIIKLGIQYDIFVGTALTDMYAKCGDIGSSKQVFERMPEK-NEISWTVMIQ 522

Query: 393 ALTQHGYDEQAIRLFHDMVRSS-VKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGI 451
            L + G+  +++ LF +M R+S V P+++ L  +L AC+H GLV +GL YF SM    GI
Sbjct: 523 GLAESGFAVESLILFEEMERTSEVAPNELMLLSVLFACSHCGLVDKGLWYFNSMEKVYGI 582

Query: 452 IPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVD 511
            P  +H+ C+++LL+++G   +    +  +P++ ++  W AL   C+ + +  +  +   
Sbjct: 583 KPKGKHYTCVVDLLSRSGRLYEAEEFIRTIPFQPEANAWAALLSGCKKYKDEKIAERTAK 642

Query: 512 QLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFS 571
           +L      +SA + LLS+IY++ G+   V  +R+L+ E+  KK    SW+E+ N+VH+F 
Sbjct: 643 KLWQLAENNSAGYVLLSNIYASAGRWIDVSNIRKLMREKGLKKSGGCSWVEVRNQVHSFY 702

Query: 572 VSDSLHPMRDVLYSVLEQLAGQM 594
             D  H   D +Y  L+ L  +M
Sbjct: 703 SEDGSHSQSDEIYGTLQLLRSEM 725



 Score =  221 bits (563), Expect = 9e-55,   Method: Compositional matrix adjust.
 Identities = 129/436 (29%), Positives = 237/436 (54%), Gaps = 13/436 (2%)

Query: 90  LSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERD 149
           +SN +IS Y + G+ V AR +FD++P +N  S++ ++SG    G ++ +   F+    ++
Sbjct: 89  VSNCMISAYVQWGNLVQARLLFDEMPERNEVSWSALISGLMKYGRVEESMWYFERNPFQN 148

Query: 150 VVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHG 209
           VVSW   I G+ ++G   E LK +  L    +  N+ +F  ++  C +L +  L   + G
Sbjct: 149 VVSWTAAISGFVRNGLNFEALKLFFRLLESGVRPNDVTFTSVVRACGELGDFGLGMSILG 208

Query: 210 QVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMES 269
            V+  GF   + +S+S++    + GE+  ARR+FD  + RDV++WT ++  Y + GD+  
Sbjct: 209 LVVKAGFEHYLSVSNSLITLSLRMGEIDLARRVFDRMEKRDVVSWTAILDAYVETGDLRE 268

Query: 270 ASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACAS 329
           A ++F+EMPE+N +SW+ +IA Y+++G  ++AL+LF++M+    +PN   F+  L A AS
Sbjct: 269 ARRIFDEMPERNEISWSAMIARYSQSGYAEEALKLFSKMVQEGFKPNISCFACTLSALAS 328

Query: 330 IVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNT 389
           + +L  G  +HG + +     +  + SSLID+Y KCG  +DGR VFDL   K N + WN+
Sbjct: 329 LRALSAGINIHGHVTKIGIDKDVFIGSSLIDLYCKCGKPDDGRLVFDLILEK-NVVCWNS 387

Query: 390 MISALTQHGYDEQAIRLFHDMVRSSVKPDK--ITLAVILNACTHSGLVQEGLTYFESMTH 447
           M+   + +G      RL        + P+K   +   IJ     +   ++ L  F ++  
Sbjct: 388 MVGGYSING------RLEEXEELFELIPEKNDXSWGTIJAGYLENEQCEKVLEVFNTLLV 441

Query: 448 DLGIIPNQEHHACLIELLAQAGCSDQLMN---QLEKMPYEHDSYLWNALHGVCRIHGNID 504
             G  PN+   + ++   A     D+ MN   ++ K+  ++D ++  AL  +    G+I 
Sbjct: 442 S-GQTPNKSTFSSVLCACASIASLDKGMNVHGKIIKLGIQYDIFVGTALTDMYAKCGDIG 500

Query: 505 MGRKVVDQLIDQNPQS 520
             ++V +++ ++N  S
Sbjct: 501 SSKQVFERMPEKNEIS 516



 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 91/303 (30%), Positives = 160/303 (52%), Gaps = 9/303 (2%)

Query: 218 SNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEM 277
           S++V+S+ ++ AY + G L  AR LFDE   R+ ++W+ ++SG  K G +E +   F   
Sbjct: 85  SDLVVSNCMISAYVQWGNLVQARLLFDEMPERNEVSWSALISGLMKYGRVEESMWYFERN 144

Query: 278 PEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGK 337
           P +N VSWT  I+G+ RNGL  +AL+LF R++   +RPN  TF+S + AC  +     G 
Sbjct: 145 PFQNVVSWTAAISGFVRNGLNFEALKLFFRLLESGVRPNDVTFTSVVRACGELGDFGLGM 204

Query: 338 QVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQH 397
            + G +++  F     V +SLI +  + G ++  R+VFD  + K + + W  ++ A  + 
Sbjct: 205 SILGLVVKAGFEHYLSVSNSLITLSLRMGEIDLARRVFDRME-KRDVVSWTAILDAYVET 263

Query: 398 GYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEH 457
           G   +A R+F +M     + ++I+ + ++   + SG  +E L  F  M  + G  PN   
Sbjct: 264 GDLREARRIFDEM----PERNEISWSAMIARYSQSGYAEEALKLFSKMVQE-GFKPNISC 318

Query: 458 HACLIELLAQAGCSDQLMN---QLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLI 514
            AC +  LA        +N    + K+  + D ++ ++L  +    G  D GR V D ++
Sbjct: 319 FACTLSALASLRALSAGINIHGHVTKIGIDKDVFIGSSLIDLYCKCGKPDDGRLVFDLIL 378

Query: 515 DQN 517
           ++N
Sbjct: 379 EKN 381


>gi|449469198|ref|XP_004152308.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g37170-like [Cucumis sativus]
 gi|449484855|ref|XP_004156999.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g37170-like [Cucumis sativus]
          Length = 724

 Score =  352 bits (902), Expect = 4e-94,   Method: Compositional matrix adjust.
 Identities = 182/540 (33%), Positives = 303/540 (56%), Gaps = 35/540 (6%)

Query: 58  ILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVK 117
           +L+ C + ++LK GK+VH H+K +   +   ++SN L+ MY KCGS VDA KVFD++  +
Sbjct: 125 LLKFCLKQRALKEGKQVHAHIKTSG--SIGLYISNRLLDMYAKCGSLVDAEKVFDEMVHR 182

Query: 118 NLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLR 177
           +L S+N M+SGY   G  + ARNLFD M  RD  SW  +I G  +    EE L+ Y++++
Sbjct: 183 DLCSWNIMISGYVKGGNFEKARNLFDKMPNRDNFSWTAIISGCVQHNRPEEALELYRLMQ 242

Query: 178 RFSIS-CNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGEL 236
           +   S  N+ + +  L     +  L + +++HG ++  G  S+ V+              
Sbjct: 243 KHDYSKSNKCTISSALAASAAIPSLHMGKKIHGHIMRMGLDSDEVV-------------- 288

Query: 237 SDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNG 296
                            W +++  Y K G +E A  +F++M E++ VSWTT+I  Y +NG
Sbjct: 289 -----------------WCSLLDMYGKCGSIEEARYIFDKMEERDVVSWTTMIHTYLKNG 331

Query: 297 LGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMS 356
             ++   LF  +M   I PN  TF+  L ACA + +   GKQ+H +++R  F S +   S
Sbjct: 332 RREEGFALFRHLMNSNIMPNDFTFAGVLNACADLAAEDLGKQIHAYMVRVGFDSFSSAAS 391

Query: 357 SLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVK 416
           +L+ MYSKCG + + + VF++   + +   W +++    QHG  ++A+  F  +++S  K
Sbjct: 392 ALVHMYSKCGDIENAKSVFEILP-QPDLFSWTSLLVGYAQHGQHDKALHFFELLLKSGTK 450

Query: 417 PDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMN 476
           PD I    +L+AC H+GLV +GL YF S+    G+    +H+AC+I+LLA+AG   +  +
Sbjct: 451 PDGIAFIGVLSACAHAGLVDKGLEYFHSIKEKHGLTRTIDHYACIIDLLARAGQFTEAES 510

Query: 477 QLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGK 536
            + +MP + D Y+W AL G CRIHGN+++ ++    L +  P++ AT+  L++IY++ G 
Sbjct: 511 IINEMPIKPDKYIWAALLGGCRIHGNLELAKRAAKSLFEIEPENPATYVTLANIYASAGM 570

Query: 537 GRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQMGE 596
                 +R+ ++ R   K+  +SWIEI  +VH FSV D+ HP    +   L +L+ +M E
Sbjct: 571 RAEEANIRETMDSRGIVKKPGMSWIEIRREVHVFSVGDNSHPKSKEILEYLSELSKRMKE 630



 Score = 78.6 bits (192), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 66/281 (23%), Positives = 125/281 (44%), Gaps = 45/281 (16%)

Query: 26  SLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKT 85
           + +  G+  E  +    L    I     T A +L  CA+  +  LGK++H ++      +
Sbjct: 326 TYLKNGRREEGFALFRHLMNSNIMPNDFTFAGVLNACADLAAEDLGKQIHAYMVRVGFDS 385

Query: 86  PTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNM 145
            ++  S  L+ MY KCG   +A+ VF+ +P  +LFS+ ++L GYA  G    A + F+ +
Sbjct: 386 FSSAASA-LVHMYSKCGDIENAKSVFEILPQPDLFSWTSLLVGYAQHGQHDKALHFFELL 444

Query: 146 ----AERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEEL 201
                + D +++  ++   A +G V++GL+++  ++                     E+ 
Sbjct: 445 LKSGTKPDGIAFIGVLSACAHAGLVDKGLEYFHSIK---------------------EKH 483

Query: 202 KLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDAR-DVLTWTTMVSG 260
            LTR +                + I+D  A+ G+ ++A  + +E   + D   W  ++ G
Sbjct: 484 GLTRTIDHY-------------ACIIDLLARAGQFTEAESIINEMPIKPDKYIWAALLGG 530

Query: 261 YAKLGDME----SASKLFNEMPEKNPVSWTTLIAGYTRNGL 297
               G++E    +A  LF   PE NP ++ TL   Y   G+
Sbjct: 531 CRIHGNLELAKRAAKSLFEIEPE-NPATYVTLANIYASAGM 570



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 68/265 (25%), Positives = 114/265 (43%), Gaps = 33/265 (12%)

Query: 298 GQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSS 357
           GQ  L    +++    +P    + + L  C    +LK GKQVH   I+T+      + + 
Sbjct: 100 GQSRLREAVQLLYRIEKPYASIYLTLLKFCLKQRALKEGKQVHAH-IKTSGSIGLYISNR 158

Query: 358 LIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKP 417
           L+DMY+KCG L D  +VFD   +++    WN MIS   + G  E+A  LF  M       
Sbjct: 159 LLDMYAKCGSLVDAEKVFDEMVHRDLCS-WNIMISGYVKGGNFEKARNLFDKMPNR---- 213

Query: 418 DKITLAVILNACTHSGLVQEGLTYFESM-THDLGIIPNQEHHACLI-------ELLAQAG 469
           D  +   I++ C      +E L  +  M  HD       + + C I         +    
Sbjct: 214 DNFSWTAIISGCVQHNRPEEALELYRLMQKHDY-----SKSNKCTISSALAASAAIPSLH 268

Query: 470 CSDQLMNQLEKMPYEHDSYLWNAL---HGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGL 526
              ++   + +M  + D  +W +L   +G C   G+I+  R + D++ +++  S  T   
Sbjct: 269 MGKKIHGHIMRMGLDSDEVVWCSLLDMYGKC---GSIEEARYIFDKMEERDVVSWTT--- 322

Query: 527 LSSIYSALGKGRLVEK---VRQLIN 548
              I++ L  GR  E     R L+N
Sbjct: 323 --MIHTYLKNGRREEGFALFRHLMN 345


>gi|359488823|ref|XP_002273685.2| PREDICTED: uncharacterized protein LOC100245824 [Vitis vinifera]
          Length = 1984

 Score =  352 bits (902), Expect = 4e-94,   Method: Compositional matrix adjust.
 Identities = 195/563 (34%), Positives = 311/563 (55%), Gaps = 7/563 (1%)

Query: 35  EAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLS--N 92
           EA+     L + G+R    T   +++ C E     LG  +   L L  +     +LS  N
Sbjct: 167 EALKLFFRLLESGVRPNDVTFTSVVRACGELGDFGLGMSI---LGLVVKAGFEHYLSVSN 223

Query: 93  HLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVS 152
            LI++  + G    AR+VFD++  +++ S+  +L  Y   G ++ AR +FD M ER+ +S
Sbjct: 224 SLITLSLRMGEIDLARRVFDRMEKRDVVSWTAILDAYVETGDLREARRIFDEMPERNEIS 283

Query: 153 WNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVL 212
           W+ MI  Y++SG  EE LK +  + +     N   FA  L+    L  L     +HG V 
Sbjct: 284 WSAMIARYSQSGYAEEALKLFSKMVQEGFKPNISCFACTLSALASLRALSAGINIHGHVT 343

Query: 213 VTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASK 272
             G   +V I SS++D Y KCG+  D R +FD    ++V+ W +MV GY+  G +E   +
Sbjct: 344 KIGIDKDVFIGSSLIDLYCKCGKPDDGRLVFDLILEKNVVCWNSMVGGYSINGRLEETEE 403

Query: 273 LFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVS 332
           LF  +PEKN VSW T+IAGY  N   +K LE+F  +++    PN+ TFSS LCACASI S
Sbjct: 404 LFELIPEKNDVSWGTIIAGYLENEQCEKVLEVFNTLLVSGQTPNKSTFSSVLCACASIAS 463

Query: 333 LKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMIS 392
           L  G  VHG +I+   + +  V ++L DMY+KCG +   +QVF+    K N + W  MI 
Sbjct: 464 LDKGMNVHGKIIKLGIQYDIFVGTALTDMYAKCGDIGSSKQVFERMPEK-NEISWTVMIQ 522

Query: 393 ALTQHGYDEQAIRLFHDMVRSS-VKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGI 451
            L + G+  +++ LF +M R+S V P+++ L  +L AC+H GLV +GL YF SM    GI
Sbjct: 523 GLAESGFAVESLILFEEMERTSEVAPNELMLLSVLFACSHCGLVDKGLWYFNSMEKVYGI 582

Query: 452 IPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVD 511
            P  +H+ C+++LL+++G   +    +  +P++ ++  W AL   C+ + +  +  +   
Sbjct: 583 KPKGKHYTCVVDLLSRSGRLYEAEEFIRTIPFQPEANAWAALLSGCKKYKDEKIAERTAK 642

Query: 512 QLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFS 571
           +L      +SA + LLS+IY++ G+   V  +R+L+ E+  KK    SW+E+ N+VH+F 
Sbjct: 643 KLWQLAENNSAGYVLLSNIYASAGRWIDVSNIRKLMREKGLKKSGGCSWVEVRNQVHSFY 702

Query: 572 VSDSLHPMRDVLYSVLEQLAGQM 594
             D  H   + +Y  L+ L  +M
Sbjct: 703 SEDGSHSQSNEIYGTLQLLRSEM 725



 Score =  222 bits (566), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 128/433 (29%), Positives = 237/433 (54%), Gaps = 13/433 (3%)

Query: 90  LSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERD 149
           +SN +IS Y + G+ V AR +FD++P +N  S++ ++SG    G ++ +   F+    ++
Sbjct: 89  VSNCMISAYVQWGNLVQARLLFDEMPERNEVSWSALISGLMKYGRVEESMWYFERNPFQN 148

Query: 150 VVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHG 209
           VVSW   I G+ ++G   E LK +  L    +  N+ +F  ++  C +L +  L   + G
Sbjct: 149 VVSWTAAISGFVRNGLNFEALKLFFRLLESGVRPNDVTFTSVVRACGELGDFGLGMSILG 208

Query: 210 QVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMES 269
            V+  GF   + +S+S++    + GE+  ARR+FD  + RDV++WT ++  Y + GD+  
Sbjct: 209 LVVKAGFEHYLSVSNSLITLSLRMGEIDLARRVFDRMEKRDVVSWTAILDAYVETGDLRE 268

Query: 270 ASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACAS 329
           A ++F+EMPE+N +SW+ +IA Y+++G  ++AL+LF++M+    +PN   F+  L A AS
Sbjct: 269 ARRIFDEMPERNEISWSAMIARYSQSGYAEEALKLFSKMVQEGFKPNISCFACTLSALAS 328

Query: 330 IVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNT 389
           + +L  G  +HG + +     +  + SSLID+Y KCG  +DGR VFDL   K N + WN+
Sbjct: 329 LRALSAGINIHGHVTKIGIDKDVFIGSSLIDLYCKCGKPDDGRLVFDLILEK-NVVCWNS 387

Query: 390 MISALTQHGYDEQAIRLFHDMVRSSVKPDK--ITLAVILNACTHSGLVQEGLTYFESMTH 447
           M+   + +G      RL        + P+K  ++   I+     +   ++ L  F ++  
Sbjct: 388 MVGGYSING------RLEETEELFELIPEKNDVSWGTIIAGYLENEQCEKVLEVFNTLLV 441

Query: 448 DLGIIPNQEHHACLIELLAQAGCSDQLMN---QLEKMPYEHDSYLWNALHGVCRIHGNID 504
             G  PN+   + ++   A     D+ MN   ++ K+  ++D ++  AL  +    G+I 
Sbjct: 442 S-GQTPNKSTFSSVLCACASIASLDKGMNVHGKIIKLGIQYDIFVGTALTDMYAKCGDIG 500

Query: 505 MGRKVVDQLIDQN 517
             ++V +++ ++N
Sbjct: 501 SSKQVFERMPEKN 513



 Score =  149 bits (377), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 91/303 (30%), Positives = 159/303 (52%), Gaps = 9/303 (2%)

Query: 218 SNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEM 277
           S++V+S+ ++ AY + G L  AR LFDE   R+ ++W+ ++SG  K G +E +   F   
Sbjct: 85  SDLVVSNCMISAYVQWGNLVQARLLFDEMPERNEVSWSALISGLMKYGRVEESMWYFERN 144

Query: 278 PEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGK 337
           P +N VSWT  I+G+ RNGL  +AL+LF R++   +RPN  TF+S + AC  +     G 
Sbjct: 145 PFQNVVSWTAAISGFVRNGLNFEALKLFFRLLESGVRPNDVTFTSVVRACGELGDFGLGM 204

Query: 338 QVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQH 397
            + G +++  F     V +SLI +  + G ++  R+VFD  + K + + W  ++ A  + 
Sbjct: 205 SILGLVVKAGFEHYLSVSNSLITLSLRMGEIDLARRVFDRME-KRDVVSWTAILDAYVET 263

Query: 398 GYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEH 457
           G   +A R+F +M       ++I+ + ++   + SG  +E L  F  M  + G  PN   
Sbjct: 264 GDLREARRIFDEMPER----NEISWSAMIARYSQSGYAEEALKLFSKMVQE-GFKPNISC 318

Query: 458 HACLIELLAQAGCSDQLMN---QLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLI 514
            AC +  LA        +N    + K+  + D ++ ++L  +    G  D GR V D ++
Sbjct: 319 FACTLSALASLRALSAGINIHGHVTKIGIDKDVFIGSSLIDLYCKCGKPDDGRLVFDLIL 378

Query: 515 DQN 517
           ++N
Sbjct: 379 EKN 381


>gi|296087629|emb|CBI34885.3| unnamed protein product [Vitis vinifera]
          Length = 728

 Score =  352 bits (902), Expect = 4e-94,   Method: Compositional matrix adjust.
 Identities = 195/563 (34%), Positives = 311/563 (55%), Gaps = 7/563 (1%)

Query: 35  EAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLS--N 92
           EA+     L + G+R    T   +++ C E     LG  +   L L  +     +LS  N
Sbjct: 167 EALKLFFRLLESGVRPNDVTFTSVVRACGELGDFGLGMSI---LGLVVKAGFEHYLSVSN 223

Query: 93  HLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVS 152
            LI++  + G    AR+VFD++  +++ S+  +L  Y   G ++ AR +FD M ER+ +S
Sbjct: 224 SLITLSLRMGEIDLARRVFDRMEKRDVVSWTAILDAYVETGDLREARRIFDEMPERNEIS 283

Query: 153 WNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVL 212
           W+ MI  Y++SG  EE LK +  + +     N   FA  L+    L  L     +HG V 
Sbjct: 284 WSAMIARYSQSGYAEEALKLFSKMVQEGFKPNISCFACTLSALASLRALSAGINIHGHVT 343

Query: 213 VTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASK 272
             G   +V I SS++D Y KCG+  D R +FD    ++V+ W +MV GY+  G +E   +
Sbjct: 344 KIGIDKDVFIGSSLIDLYCKCGKPDDGRLVFDLILEKNVVCWNSMVGGYSINGRLEETEE 403

Query: 273 LFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVS 332
           LF  +PEKN VSW T+IAGY  N   +K LE+F  +++    PN+ TFSS LCACASI S
Sbjct: 404 LFELIPEKNDVSWGTIIAGYLENEQCEKVLEVFNTLLVSGQTPNKSTFSSVLCACASIAS 463

Query: 333 LKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMIS 392
           L  G  VHG +I+   + +  V ++L DMY+KCG +   +QVF+    K N + W  MI 
Sbjct: 464 LDKGMNVHGKIIKLGIQYDIFVGTALTDMYAKCGDIGSSKQVFERMPEK-NEISWTVMIQ 522

Query: 393 ALTQHGYDEQAIRLFHDMVRSS-VKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGI 451
            L + G+  +++ LF +M R+S V P+++ L  +L AC+H GLV +GL YF SM    GI
Sbjct: 523 GLAESGFAVESLILFEEMERTSEVAPNELMLLSVLFACSHCGLVDKGLWYFNSMEKVYGI 582

Query: 452 IPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVD 511
            P  +H+ C+++LL+++G   +    +  +P++ ++  W AL   C+ + +  +  +   
Sbjct: 583 KPKGKHYTCVVDLLSRSGRLYEAEEFIRTIPFQPEANAWAALLSGCKKYKDEKIAERTAK 642

Query: 512 QLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFS 571
           +L      +SA + LLS+IY++ G+   V  +R+L+ E+  KK    SW+E+ N+VH+F 
Sbjct: 643 KLWQLAENNSAGYVLLSNIYASAGRWIDVSNIRKLMREKGLKKSGGCSWVEVRNQVHSFY 702

Query: 572 VSDSLHPMRDVLYSVLEQLAGQM 594
             D  H   + +Y  L+ L  +M
Sbjct: 703 SEDGSHSQSNEIYGTLQLLRSEM 725



 Score =  221 bits (564), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 129/436 (29%), Positives = 238/436 (54%), Gaps = 13/436 (2%)

Query: 90  LSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERD 149
           +SN +IS Y + G+ V AR +FD++P +N  S++ ++SG    G ++ +   F+    ++
Sbjct: 89  VSNCMISAYVQWGNLVQARLLFDEMPERNEVSWSALISGLMKYGRVEESMWYFERNPFQN 148

Query: 150 VVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHG 209
           VVSW   I G+ ++G   E LK +  L    +  N+ +F  ++  C +L +  L   + G
Sbjct: 149 VVSWTAAISGFVRNGLNFEALKLFFRLLESGVRPNDVTFTSVVRACGELGDFGLGMSILG 208

Query: 210 QVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMES 269
            V+  GF   + +S+S++    + GE+  ARR+FD  + RDV++WT ++  Y + GD+  
Sbjct: 209 LVVKAGFEHYLSVSNSLITLSLRMGEIDLARRVFDRMEKRDVVSWTAILDAYVETGDLRE 268

Query: 270 ASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACAS 329
           A ++F+EMPE+N +SW+ +IA Y+++G  ++AL+LF++M+    +PN   F+  L A AS
Sbjct: 269 ARRIFDEMPERNEISWSAMIARYSQSGYAEEALKLFSKMVQEGFKPNISCFACTLSALAS 328

Query: 330 IVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNT 389
           + +L  G  +HG + +     +  + SSLID+Y KCG  +DGR VFDL   K N + WN+
Sbjct: 329 LRALSAGINIHGHVTKIGIDKDVFIGSSLIDLYCKCGKPDDGRLVFDLILEK-NVVCWNS 387

Query: 390 MISALTQHGYDEQAIRLFHDMVRSSVKPDK--ITLAVILNACTHSGLVQEGLTYFESMTH 447
           M+   + +G      RL        + P+K  ++   I+     +   ++ L  F ++  
Sbjct: 388 MVGGYSING------RLEETEELFELIPEKNDVSWGTIIAGYLENEQCEKVLEVFNTLLV 441

Query: 448 DLGIIPNQEHHACLIELLAQAGCSDQLMN---QLEKMPYEHDSYLWNALHGVCRIHGNID 504
             G  PN+   + ++   A     D+ MN   ++ K+  ++D ++  AL  +    G+I 
Sbjct: 442 S-GQTPNKSTFSSVLCACASIASLDKGMNVHGKIIKLGIQYDIFVGTALTDMYAKCGDIG 500

Query: 505 MGRKVVDQLIDQNPQS 520
             ++V +++ ++N  S
Sbjct: 501 SSKQVFERMPEKNEIS 516



 Score =  150 bits (378), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 91/303 (30%), Positives = 160/303 (52%), Gaps = 9/303 (2%)

Query: 218 SNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEM 277
           S++V+S+ ++ AY + G L  AR LFDE   R+ ++W+ ++SG  K G +E +   F   
Sbjct: 85  SDLVVSNCMISAYVQWGNLVQARLLFDEMPERNEVSWSALISGLMKYGRVEESMWYFERN 144

Query: 278 PEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGK 337
           P +N VSWT  I+G+ RNGL  +AL+LF R++   +RPN  TF+S + AC  +     G 
Sbjct: 145 PFQNVVSWTAAISGFVRNGLNFEALKLFFRLLESGVRPNDVTFTSVVRACGELGDFGLGM 204

Query: 338 QVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQH 397
            + G +++  F     V +SLI +  + G ++  R+VFD  + K + + W  ++ A  + 
Sbjct: 205 SILGLVVKAGFEHYLSVSNSLITLSLRMGEIDLARRVFDRME-KRDVVSWTAILDAYVET 263

Query: 398 GYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEH 457
           G   +A R+F +M     + ++I+ + ++   + SG  +E L  F  M  + G  PN   
Sbjct: 264 GDLREARRIFDEM----PERNEISWSAMIARYSQSGYAEEALKLFSKMVQE-GFKPNISC 318

Query: 458 HACLIELLAQAGCSDQLMN---QLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLI 514
            AC +  LA        +N    + K+  + D ++ ++L  +    G  D GR V D ++
Sbjct: 319 FACTLSALASLRALSAGINIHGHVTKIGIDKDVFIGSSLIDLYCKCGKPDDGRLVFDLIL 378

Query: 515 DQN 517
           ++N
Sbjct: 379 EKN 381


>gi|296088715|emb|CBI38165.3| unnamed protein product [Vitis vinifera]
          Length = 654

 Score =  351 bits (901), Expect = 6e-94,   Method: Compositional matrix adjust.
 Identities = 192/581 (33%), Positives = 321/581 (55%), Gaps = 60/581 (10%)

Query: 16  PNNCLIQSFLSLISK-GQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRV 74
           P+ C   S +S  ++  +  E++     + +    L   +    L  CA    L +G +V
Sbjct: 110 PDQCSWNSMVSGFAQHDRFEESLEYFVKMHREDFLLNEYSFGSALSACAGLMDLNMGTQV 169

Query: 75  HLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGM 134
           H  L    R +   ++ + LI MY KCGS   A +VF                       
Sbjct: 170 HA-LVSKSRYSTDVYMGSALIDMYSKCGSVACAEEVFS---------------------- 206

Query: 135 MKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTI 194
                     M ER++V+WN++I  Y ++G   E L+ +  +    +  +E + A +++ 
Sbjct: 207 ---------GMIERNLVTWNSLITCYEQNGPASEALEVFVRMMDSGLEPDEVTLASVVSA 257

Query: 195 CVKLEELKLTRQVHGQVLVTG-FLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLT 253
           C  L  LK   Q+H +V+ T  F  ++V+ +++VD YAKC ++++ARR+FD    R+V++
Sbjct: 258 CASLCALKEGLQIHARVVKTNKFRDDLVLGNALVDMYAKCSKVNEARRVFDRMSIRNVVS 317

Query: 254 WTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRI 313
            T+MVSGYA+   +++A  +F++M ++N VSW  LIAGYT+NG  ++AL LF  +    I
Sbjct: 318 ETSMVSGYARAASVKAARFMFSKMTQRNVVSWNALIAGYTQNGENEEALRLFRLLKRESI 377

Query: 314 RPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQ 373
            P  +TF + L                        +S+  V +SLIDMY KCG + DG +
Sbjct: 378 WPTHYTFGNLL------------------------KSDIFVGNSLIDMYMKCGSIEDGSR 413

Query: 374 VFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSG 433
           VF+    ++  + WN +I    Q+GY  +A+++F  M+    KPD +T+  +L AC+H+G
Sbjct: 414 VFEKMKERD-CVSWNAIIVGYAQNGYGAEALQIFRKMLVCGEKPDHVTMIGVLCACSHAG 472

Query: 434 LVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNAL 493
           LV+EG  YF SM  + G+IP ++H+ C+++LL +AGC ++  N +E MP   D+ +W +L
Sbjct: 473 LVEEGRHYFFSM-EEHGLIPLKDHYTCMVDLLGRAGCLNEAKNLIEAMPVNPDAVVWGSL 531

Query: 494 HGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFK 553
              C++HGNI+MG+   ++L++ +P +S  + LLS++Y+ LG+   V +VR+L+ ++   
Sbjct: 532 LAACKVHGNIEMGKHAAEKLLEIDPWNSGPYVLLSNMYAELGRWGDVVRVRKLMRQQGVT 591

Query: 554 KEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQM 594
           K+   SWIE+E++VH F V D  HP R  +YSVL+ L  QM
Sbjct: 592 KQPGCSWIEVESRVHVFLVKDKSHPHRKQIYSVLKMLTEQM 632



 Score =  222 bits (566), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 134/443 (30%), Positives = 223/443 (50%), Gaps = 75/443 (16%)

Query: 46  RGIRLP-AETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSD 104
           R + LP +   A +L  C  S+S +  + VH  + +TQ  +   F+ N LI +Y KC   
Sbjct: 8   RDLYLPNSSPFAKLLDSCLRSRSARGTRLVHARILMTQF-SMEIFIQNRLIDVYGKCDCL 66

Query: 105 VDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSG 164
            DARK+FD++P +N F++N+++S     G +  A  LF +M E D  SWN+M+ G+A+  
Sbjct: 67  DDARKLFDRMPQRNTFTWNSLISVLTKSGFLDEAARLFGSMPEPDQCSWNSMVSGFAQHD 126

Query: 165 AVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISS 224
             EE L+++  + R     NE+SF   L+ C  L +L +  QVH  V  + + ++V + S
Sbjct: 127 RFEESLEYFVKMHREDFLLNEYSFGSALSACAGLMDLNMGTQVHALVSKSRYSTDVYMGS 186

Query: 225 SIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVS 284
           +++D Y+KCG ++ A  +F     R+++TW +                            
Sbjct: 187 ALIDMYSKCGSVACAEEVFSGMIERNLVTWNS---------------------------- 218

Query: 285 WTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLI 344
              LI  Y +NG   +ALE+F RMM   + P++ T +S + ACAS+ +LK G Q+H  ++
Sbjct: 219 ---LITCYEQNGPASEALEVFVRMMDSGLEPDEVTLASVVSACASLCALKEGLQIHARVV 275

Query: 345 RTN-FRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNK----ENSML------------- 386
           +TN FR + ++ ++L+DMY+KC  +N+ R+VFD    +    E SM+             
Sbjct: 276 KTNKFRDDLVLGNALVDMYAKCSKVNEARRVFDRMSIRNVVSETSMVSGYARAASVKAAR 335

Query: 387 -------------WNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNA----- 428
                        WN +I+  TQ+G +E+A+RLF  + R S+ P   T   +L +     
Sbjct: 336 FMFSKMTQRNVVSWNALIAGYTQNGENEEALRLFRLLKRESIWPTHYTFGNLLKSDIFVG 395

Query: 429 ------CTHSGLVQEGLTYFESM 445
                     G +++G   FE M
Sbjct: 396 NSLIDMYMKCGSIEDGSRVFEKM 418


>gi|414867813|tpg|DAA46370.1| TPA: hypothetical protein ZEAMMB73_198598 [Zea mays]
          Length = 529

 Score =  351 bits (900), Expect = 7e-94,   Method: Compositional matrix adjust.
 Identities = 190/523 (36%), Positives = 307/523 (58%), Gaps = 13/523 (2%)

Query: 1   MPSNFSPRGINRKNLPNNCLIQSFLSLISKGQLSEAISSLDLLAQRGIRLP----AETLA 56
           +P   SP    R+    + L+ +  S IS G    A+S L  LA+ G+R P    +    
Sbjct: 3   VPGEPSPPASPRQY---SGLLAALHSCISGGNAPAAVSLLPTLARAGLRAPFPLLSSLAG 59

Query: 57  FILQQCAESKSLKLGKRVHLHLKLTQRK--TP-TTFLSNHLISMYFKCGSDVDARKVFDK 113
            +L + A      L  R+ L+++L   K   P +T L++ L+S+ F  G   DAR++F K
Sbjct: 60  LLLLRPAAPSFPSLAGRLLLYVRLAGLKHLVPCSTQLADQLLSLNFLLGRPRDARRLFTK 119

Query: 114 IPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFY 173
           +P  ++ SYN ML+GYA L +   A  +F +M  R++VS+N +++   + G  +  ++ Y
Sbjct: 120 MPRPSVHSYNAMLAGYARLSLAAPASEVFSSMPHRELVSYNAVMLALGRGGEAQGAVELY 179

Query: 174 KVLRRF--SISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYA 231
             LR    S+  N  +F  +L    +L + +L RQ H  ++V GFLS+V I+SS++D Y 
Sbjct: 180 SELRNMYPSLGYNYHTFLALLVAGAQLMDRELARQFHCHLVVLGFLSDVKIASSLLDVYR 239

Query: 232 KCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAG 291
           KC  + DAR+LF E   +DV  WTT+V   A+ G + +A +LF++MPE+N  +WT LI G
Sbjct: 240 KCHCVDDARKLFGEMHIKDVRMWTTVVCACAEDGQLATARQLFDQMPERNAFTWTALIEG 299

Query: 292 YTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSN 351
           Y  +G    AL +F  MM   ++P+Q T   CL ACA++ SL  G+Q+HG L+R  F  +
Sbjct: 300 YACHGQPMDALNMFQHMMKEGLQPDQITLGCCLSACAAMRSLNLGQQIHGMLLRCGFDRS 359

Query: 352 TIVMSSLIDMYSKCGCLNDGRQVFDLT-DNKENSMLWNTMISALTQHGYDEQAIRLFHDM 410
            ++++++IDMYSKC  L+   +VF LT   ++N++LWN M+SAL  HG+++  I LF  M
Sbjct: 360 VMIVTAIIDMYSKCSFLSGAIKVFSLTGKERKNAVLWNGMLSALYDHGHEQDVIGLFVQM 419

Query: 411 VRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGC 470
           +    KPD  T  ++L AC H GLV+EG+ +F+ M     I+P QEH+ C+ +L++ A  
Sbjct: 420 IHGRHKPDANTFFLVLVACCHCGLVEEGMNFFDLMNERYRIVPGQEHYFCMADLVSHASS 479

Query: 471 SDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQL 513
           +++++  ++  P+  +  +W  L   C IHGNI++  KV ++L
Sbjct: 480 NNKVIEWIKSSPFSFNLRVWEVLVRNCTIHGNIELLNKVEEEL 522


>gi|356547226|ref|XP_003542017.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g37170-like [Glycine max]
          Length = 693

 Score =  350 bits (899), Expect = 9e-94,   Method: Compositional matrix adjust.
 Identities = 192/598 (32%), Positives = 334/598 (55%), Gaps = 39/598 (6%)

Query: 10  INRKNL--PNNCLIQSFLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKS 67
           +N K+L   +N   ++   L  + ++ EA+   +LL +   R  A   + ++  C   ++
Sbjct: 46  LNPKDLVSEDNKFEEAVDVLCQQKRVKEAV---ELLHRTDHRPSARVYSTLIAACVRHRA 102

Query: 68  LKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLS 127
           L+LG+RVH H K +    P  F+SN L+ MY KCGS VDA+ +FD++  ++L S+N M+ 
Sbjct: 103 LELGRRVHAHTKASNF-VPGVFISNRLLDMYAKCGSLVDAQMLFDEMGHRDLCSWNTMIV 161

Query: 128 GYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFS-ISCNEF 186
           GYA LG ++ AR LFD M +RD  SWN  I GY       E L+ ++V++R    S N+F
Sbjct: 162 GYAKLGRLEQARKLFDEMPQRDNFSWNAAISGYVTHNQPREALELFRVMQRHERSSSNKF 221

Query: 187 SFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDET 246
           + +  L     +  L+L +++HG ++ T                    EL+         
Sbjct: 222 TLSSALAASAAIPCLRLGKEIHGYLIRT--------------------ELN--------- 252

Query: 247 DARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFT 306
              D + W+ ++  Y K G ++ A  +F++M +++ VSWTT+I     +G  ++   LF 
Sbjct: 253 --LDEVVWSALLDLYGKCGSLDEARGIFDQMKDRDVVSWTTMIHRCFEDGRREEGFLLFR 310

Query: 307 RMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCG 366
            +M   +RPN++TF+  L ACA   +   GK+VHG+++   +   +  +S+L+ MYSKCG
Sbjct: 311 DLMQSGVRPNEYTFAGVLNACADHAAEHLGKEVHGYMMHAGYDPGSFAISALVHMYSKCG 370

Query: 367 CLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVIL 426
                R+VF+   ++ + + W ++I    Q+G  ++A+  F  +++S  KPD++T   +L
Sbjct: 371 NTRVARRVFNEM-HQPDLVSWTSLIVGYAQNGQPDEALHFFELLLQSGTKPDQVTYVGVL 429

Query: 427 NACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHD 486
           +ACTH+GLV +GL YF S+    G++   +H+AC+I+LLA++G   +  N ++ MP + D
Sbjct: 430 SACTHAGLVDKGLEYFHSIKEKHGLMHTADHYACVIDLLARSGRFKEAENIIDNMPVKPD 489

Query: 487 SYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQL 546
            +LW +L G CRIHGN+++ ++    L +  P++ AT+  L++IY+  G    V  VR+ 
Sbjct: 490 KFLWASLLGGCRIHGNLELAKRAAKALYEIEPENPATYITLANIYANAGLWSEVANVRKD 549

Query: 547 INERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQMGEDAPSLDAD 604
           ++     K+   SWIEI+ +VH F V D+ HP    ++  L +L+ ++ E+    D +
Sbjct: 550 MDNMGIVKKPGKSWIEIKRQVHVFLVGDTSHPKTSDIHEFLGELSKKIKEEGYVPDTN 607


>gi|225441187|ref|XP_002266244.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 722

 Score =  350 bits (899), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 195/590 (33%), Positives = 321/590 (54%), Gaps = 55/590 (9%)

Query: 8   RGINRKNLPNNCLIQSFLSLISKGQLSEAISSLDLLAQRGIRLPAE-TLAFILQQCAESK 66
           RG +R + P   ++  ++S+I+KG                I  P   T  F+L  CA   
Sbjct: 83  RGYSRSDNPREAIVL-YMSMIAKG----------------IAPPNNFTFPFLLNSCARLS 125

Query: 67  SLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNML 126
           SL+ G  VH H+                     K G + D            LF  N ++
Sbjct: 126 SLEPGHEVHSHI--------------------IKHGFESD------------LFVRNALI 153

Query: 127 SGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEF 186
             Y+  G +  AR LFD    RD+VS+NTMI GYA+    E  L  +  ++   I  +EF
Sbjct: 154 HLYSVFGNLNLARTLFDESLVRDLVSYNTMIKGYAEVNQPESALCLFGEMQNSGILPDEF 213

Query: 187 SFAGILTICVKLEELKLTRQVHGQVL--VTGFLSNVVISSSIVDAYAKCGELSDARRLFD 244
           +F  + ++C  L E  + +Q+H QV   +    SN+++ S+IVD YAKCG ++ A R+F 
Sbjct: 214 TFVALFSVCSVLNEPNVGKQIHAQVYKNLRSIDSNILLKSAIVDMYAKCGLINIAERVFS 273

Query: 245 ETD-ARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALE 303
               ++    W++MV GYA+ G++  A KLFN M E++ +SWT +I+GY++ G   +ALE
Sbjct: 274 TMGTSKSAAAWSSMVCGYARCGEINVARKLFNHMHERDVISWTAMISGYSQAGQCSEALE 333

Query: 304 LFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQV-HGFLIRTNFRSNTIVMSSLIDMY 362
           LF  M  L I+P++ T  + L ACA + +   GK++ H ++    F  NTI+ ++++DMY
Sbjct: 334 LFKEMEALGIKPDEVTLVAVLSACARLGAFDLGKRLYHQYIENGVFNQNTILTAAVMDMY 393

Query: 363 SKCGCLNDGRQVFD-LTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKIT 421
           +KCG ++   ++F  +  N +   ++N+MI+ L QHG  E AI +F +++ + +KPD++T
Sbjct: 394 AKCGSIDSALEIFRRVGKNMKTGFVFNSMIAGLAQHGLGETAITVFRELISTGLKPDEVT 453

Query: 422 LAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKM 481
              +L AC HSGL++EG   FESM +  GI P  EH+ C+++LL + GC ++  + ++KM
Sbjct: 454 FVGVLCACGHSGLIEEGKKLFESMFNAYGIKPQMEHYGCMVDLLGRYGCLEEAYDLVQKM 513

Query: 482 PYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVE 541
           P+E +S +W AL   CR HGN+ +G     +L++   Q  A + LLS+I +   +     
Sbjct: 514 PFEANSVIWRALLSACRTHGNVKIGEIAGQKLLEMEAQHGARYVLLSNILADANQWEEAR 573

Query: 542 KVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLA 591
           +VR+++ +   +K    S+IE+   +H F  SD  HP    +  +L+ +A
Sbjct: 574 QVRKVMEDHGIRKPPGWSYIELGGAIHRFVASDKSHPQGKEIELMLKDMA 623



 Score =  154 bits (388), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 121/490 (24%), Positives = 218/490 (44%), Gaps = 78/490 (15%)

Query: 99  FKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGM---MKHARNLFDNMAERDVVSWNT 155
           FK G  + A+ + + +    +FS + ++S ++ LG    + H+R LF  +   ++  WNT
Sbjct: 22  FKQGLQIHAQTIVNGLH-HQIFSISRLISFFSLLGSKDGLDHSRLLFSQIDCPNLFMWNT 80

Query: 156 MIIGYAKSGAVEEGLKFYKVLRRFSIS-CNEFSFAGILTICVKLEELKLTRQVHGQVLVT 214
           MI GY++S    E +  Y  +    I+  N F+F  +L  C +L  L+   +VH  ++  
Sbjct: 81  MIRGYSRSDNPREAIVLYMSMIAKGIAPPNNFTFPFLLNSCARLSSLEPGHEVHSHIIKH 140

Query: 215 GFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLF 274
           GF S++ + ++++  Y+  G L+ AR LFDE+  RD++++ TM+ GYA++   ESA  LF
Sbjct: 141 GFESDLFVRNALIHLYSVFGNLNLARTLFDESLVRDLVSYNTMIKGYAEVNQPESALCLF 200

Query: 275 NEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLK 334
            EM                                   I P++ TF +    C+ +    
Sbjct: 201 GEMQNSG-------------------------------ILPDEFTFVALFSVCSVLNEPN 229

Query: 335 HGKQVHGFLIRTNFR---SNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNT-- 389
            GKQ+H   +  N R   SN ++ S+++DMY+KCG +N   +VF      +++  W++  
Sbjct: 230 VGKQIHA-QVYKNLRSIDSNILLKSAIVDMYAKCGLINIAERVFSTMGTSKSAAAWSSMV 288

Query: 390 -----------------------------MISALTQHGYDEQAIRLFHDMVRSSVKPDKI 420
                                        MIS  +Q G   +A+ LF +M    +KPD++
Sbjct: 289 CGYARCGEINVARKLFNHMHERDVISWTAMISGYSQAGQCSEALELFKEMEALGIKPDEV 348

Query: 421 TLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEK 480
           TL  +L+AC   G    G   +     +     N    A ++++ A+ G  D  +    +
Sbjct: 349 TLVAVLSACARLGAFDLGKRLYHQYIENGVFNQNTILTAAVMDMYAKCGSIDSALEIFRR 408

Query: 481 MPYEHDS-YLWNALHGVCRIHGNIDMGRKVVDQLIDQN--PQSSATHGLLSSIYSALGKG 537
           +     + +++N++      HG  +    V  +LI     P      G+L     A G  
Sbjct: 409 VGKNMKTGFVFNSMIAGLAQHGLGETAITVFRELISTGLKPDEVTFVGVL----CACGHS 464

Query: 538 RLVEKVRQLI 547
            L+E+ ++L 
Sbjct: 465 GLIEEGKKLF 474



 Score = 56.2 bits (134), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 50/195 (25%), Positives = 78/195 (40%), Gaps = 38/195 (19%)

Query: 322 SCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGC---LNDGRQVFDLT 378
           S LC   S  S K G Q+H   I          +S LI  +S  G    L+  R +F   
Sbjct: 11  SSLCLLESCKSFKQGLQIHAQTIVNGLHHQIFSISRLISFFSLLGSKDGLDHSRLLFSQI 70

Query: 379 DNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSV-KPDKITLAVILNACTHSGLVQE 437
           D   N  +WNTMI   ++     +AI L+  M+   +  P+  T   +LN+C        
Sbjct: 71  DCP-NLFMWNTMIRGYSRSDNPREAIVLYMSMIAKGIAPPNNFTFPFLLNSCAR------ 123

Query: 438 GLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVC 497
            L+  E         P  E H+ +I                 K  +E D ++ NAL  + 
Sbjct: 124 -LSSLE---------PGHEVHSHII-----------------KHGFESDLFVRNALIHLY 156

Query: 498 RIHGNIDMGRKVVDQ 512
            + GN+++ R + D+
Sbjct: 157 SVFGNLNLARTLFDE 171


>gi|15227619|ref|NP_180537.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75100656|sp|O82380.1|PP175_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g29760, chloroplastic; Flags: Precursor
 gi|3582328|gb|AAC35225.1| hypothetical protein [Arabidopsis thaliana]
 gi|330253207|gb|AEC08301.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 738

 Score =  350 bits (898), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 179/552 (32%), Positives = 308/552 (55%), Gaps = 34/552 (6%)

Query: 40  LDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYF 99
           LD++++        T  F+++  AE  SL LG+ +H  + +        F++N LI  YF
Sbjct: 119 LDMVSESQCYPNKYTFPFLIKAAAEVSSLSLGQSLH-GMAVKSAVGSDVFVANSLIHCYF 177

Query: 100 KCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIG 159
            CG D+D+                              A  +F  + E+DVVSWN+MI G
Sbjct: 178 SCG-DLDS------------------------------ACKVFTTIKEKDVVSWNSMING 206

Query: 160 YAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSN 219
           + + G+ ++ L+ +K +    +  +  +  G+L+ C K+  L+  RQV   +       N
Sbjct: 207 FVQKGSPDKALELFKKMESEDVKASHVTMVGVLSACAKIRNLEFGRQVCSYIEENRVNVN 266

Query: 220 VVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPE 279
           + ++++++D Y KCG + DA+RLFD  + +D +TWTTM+ GYA   D E+A ++ N MP+
Sbjct: 267 LTLANAMLDMYTKCGSIEDAKRLFDAMEEKDNVTWTTMLDGYAISEDYEAAREVLNSMPQ 326

Query: 280 KNPVSWTTLIAGYTRNGLGQKALELFTRMMILR-IRPNQHTFSSCLCACASIVSLKHGKQ 338
           K+ V+W  LI+ Y +NG   +AL +F  + + + ++ NQ T  S L ACA + +L+ G+ 
Sbjct: 327 KDIVAWNALISAYEQNGKPNEALIVFHELQLQKNMKLNQITLVSTLSACAQVGALELGRW 386

Query: 339 VHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHG 398
           +H ++ +   R N  V S+LI MYSKCG L   R+VF+  + K +  +W+ MI  L  HG
Sbjct: 387 IHSYIKKHGIRMNFHVTSALIHMYSKCGDLEKSREVFNSVE-KRDVFVWSAMIGGLAMHG 445

Query: 399 YDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHH 458
              +A+ +F+ M  ++VKP+ +T   +  AC+H+GLV E  + F  M  + GI+P ++H+
Sbjct: 446 CGNEAVDMFYKMQEANVKPNGVTFTNVFCACSHTGLVDEAESLFHQMESNYGIVPEEKHY 505

Query: 459 ACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNP 518
           AC++++L ++G  ++ +  +E MP    + +W AL G C+IH N+++      +L++  P
Sbjct: 506 ACIVDVLGRSGYLEKAVKFIEAMPIPPSTSVWGALLGACKIHANLNLAEMACTRLLELEP 565

Query: 519 QSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHP 578
           ++   H LLS+IY+ LGK   V ++R+ +     KKE   S IEI+  +H F   D+ HP
Sbjct: 566 RNDGAHVLLSNIYAKLGKWENVSELRKHMRVTGLKKEPGCSSIEIDGMIHEFLSGDNAHP 625

Query: 579 MRDVLYSVLEQL 590
           M + +Y  L ++
Sbjct: 626 MSEKVYGKLHEV 637



 Score =  155 bits (392), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 112/462 (24%), Positives = 217/462 (46%), Gaps = 78/462 (16%)

Query: 126 LSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKS-GAVEEGLKFYKVLRRFSISCN 184
           LS +A+L   ++AR +FD + + +  +WNT+I  YA     V     F  ++       N
Sbjct: 74  LSSFASL---EYARKVFDEIPKPNSFAWNTLIRAYASGPDPVLSIWAFLDMVSESQCYPN 130

Query: 185 EFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFD 244
           +++F  ++    ++  L L + +HG  + +   S+V +++S++  Y  CG+L  A ++F 
Sbjct: 131 KYTFPFLIKAAAEVSSLSLGQSLHGMAVKSAVGSDVFVANSLIHCYFSCGDLDSACKVFT 190

Query: 245 ETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALEL 304
               +DV++W +M++G+ + G  +                               KALEL
Sbjct: 191 TIKEKDVVSWNSMINGFVQKGSPD-------------------------------KALEL 219

Query: 305 FTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSK 364
           F +M    ++ +  T    L ACA I +L+ G+QV  ++       N  + ++++DMY+K
Sbjct: 220 FKKMESEDVKASHVTMVGVLSACAKIRNLEFGRQVCSYIEENRVNVNLTLANAMLDMYTK 279

Query: 365 CGCLNDGRQVFDLTDNKEN----SML--------------------------WNTMISAL 394
           CG + D +++FD  + K+N    +ML                          WN +ISA 
Sbjct: 280 CGSIEDAKRLFDAMEEKDNVTWTTMLDGYAISEDYEAAREVLNSMPQKDIVAWNALISAY 339

Query: 395 TQHGYDEQAIRLFHDM-VRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIP 453
            Q+G   +A+ +FH++ ++ ++K ++ITL   L+AC   G ++ G  +  S     GI  
Sbjct: 340 EQNGKPNEALIVFHELQLQKNMKLNQITLVSTLSACAQVGALELG-RWIHSYIKKHGIRM 398

Query: 454 NQEHHACLIELLAQAG---CSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVV 510
           N    + LI + ++ G    S ++ N +EK     D ++W+A+ G   +HG    G + V
Sbjct: 399 NFHVTSALIHMYSKCGDLEKSREVFNSVEK----RDVFVWSAMIGGLAMHG---CGNEAV 451

Query: 511 DQLIDQNPQSSATHGL-LSSIYSALGKGRLVEKVRQLINERQ 551
           D        +   +G+  ++++ A     LV++   L ++ +
Sbjct: 452 DMFYKMQEANVKPNGVTFTNVFCACSHTGLVDEAESLFHQME 493



 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 88/383 (22%), Positives = 181/383 (47%), Gaps = 37/383 (9%)

Query: 18  NCLIQSFLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLH 77
           N +I  F   + KG   +A+     +    ++    T+  +L  CA+ ++L+ G++V  +
Sbjct: 201 NSMINGF---VQKGSPDKALELFKKMESEDVKASHVTMVGVLSACAKIRNLEFGRQVCSY 257

Query: 78  LKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKH 137
           ++  +     T L+N ++ MY KCGS  DA+++FD +  K+  ++  ML GYA     + 
Sbjct: 258 IEENRVNVNLT-LANAMLDMYTKCGSIEDAKRLFDAMEEKDNVTWTTMLDGYAISEDYEA 316

Query: 138 ARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGL-KFYKVLRRFSISCNEFSFAGILTICV 196
           AR + ++M ++D+V+WN +I  Y ++G   E L  F+++  + ++  N+ +    L+ C 
Sbjct: 317 AREVLNSMPQKDIVAWNALISAYEQNGKPNEALIVFHELQLQKNMKLNQITLVSTLSACA 376

Query: 197 KLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTT 256
           ++  L+L R +H  +   G   N  ++S+++  Y+KCG+L  +R +F+  + RDV  W+ 
Sbjct: 377 QVGALELGRWIHSYIKKHGIRMNFHVTSALIHMYSKCGDLEKSREVFNSVEKRDVFVWSA 436

Query: 257 MVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPN 316
           M+ G A                                +G G +A+++F +M    ++PN
Sbjct: 437 MIGGLA-------------------------------MHGCGNEAVDMFYKMQEANVKPN 465

Query: 317 QHTFSSCLCACASIVSLKHGKQV-HGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVF 375
             TF++  CAC+    +   + + H               + ++D+  + G L    +  
Sbjct: 466 GVTFTNVFCACSHTGLVDEAESLFHQMESNYGIVPEEKHYACIVDVLGRSGYLEKAVKFI 525

Query: 376 DLTDNKENSMLWNTMISALTQHG 398
           +      ++ +W  ++ A   H 
Sbjct: 526 EAMPIPPSTSVWGALLGACKIHA 548



 Score =  101 bits (252), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 69/237 (29%), Positives = 113/237 (47%), Gaps = 34/237 (14%)

Query: 195 CVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTW 254
           CV L +LK   Q HG ++ TG  S         D Y+       A +LF           
Sbjct: 40  CVSLRQLK---QTHGHMIRTGTFS---------DPYS-------ASKLF----------- 69

Query: 255 TTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMI-LRI 313
              ++  +    +E A K+F+E+P+ N  +W TLI  Y        ++  F  M+   + 
Sbjct: 70  --AMAALSSFASLEYARKVFDEIPKPNSFAWNTLIRAYASGPDPVLSIWAFLDMVSESQC 127

Query: 314 RPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQ 373
            PN++TF   + A A + SL  G+ +HG  +++   S+  V +SLI  Y  CG L+   +
Sbjct: 128 YPNKYTFPFLIKAAAEVSSLSLGQSLHGMAVKSAVGSDVFVANSLIHCYFSCGDLDSACK 187

Query: 374 VFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACT 430
           VF  T  +++ + WN+MI+   Q G  ++A+ LF  M    VK   +T+  +L+AC 
Sbjct: 188 VFT-TIKEKDVVSWNSMINGFVQKGSPDKALELFKKMESEDVKASHVTMVGVLSACA 243


>gi|359493517|ref|XP_002264078.2| PREDICTED: pentatricopeptide repeat-containing protein
           At1g33350-like [Vitis vinifera]
          Length = 573

 Score =  350 bits (898), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 185/470 (39%), Positives = 274/470 (58%), Gaps = 12/470 (2%)

Query: 132 LGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYK-VLRRFSISCNEFSFAG 190
           L  + +AR +FD++   +V  +  MI  YA        L  Y+ ++RR     N F +  
Sbjct: 101 LSNLSYARFIFDHVESPNVYLYTAMITAYASHSDHTSALLLYRNMVRRRRPWPNHFIYPH 160

Query: 191 ILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAK-CGELSDARRLFDETDAR 249
           +L  C ++      R VH QVL +GF    V+ ++++DAY +   ++  AR LFDE   R
Sbjct: 161 VLKSCTQVVGPGSARMVHCQVLRSGFEQYPVVQTALLDAYLRFWSDVESARLLFDEMTER 220

Query: 250 DVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMM 309
           +V++WT M+SGY +LG + +A  LF EMPE++  SW  LIAGYT+NGL  +AL LF RM+
Sbjct: 221 NVVSWTAMISGYTRLGQIGNAVLLFEEMPERDVPSWNALIAGYTQNGLFMEALSLFRRMI 280

Query: 310 ILRI-------RPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMY 362
            +         RPNQ T    L AC     L+ GK +HG++ R     ++ V ++L+DMY
Sbjct: 281 AVEAGAWGQGNRPNQVTAVCSLSACGHTGMLRLGKWIHGYVYRNGLGLDSFVSNALVDMY 340

Query: 363 SKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVR--SSVKPDKI 420
            KCGCL + R+VFD T  +  +  WN+MI+ L  HG  + AI +F +M+   S VKPD++
Sbjct: 341 GKCGCLKEARRVFDRTLERSLTS-WNSMINCLALHGQSQNAISVFEEMMTCGSGVKPDEV 399

Query: 421 TLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEK 480
           T   +LNACTH GLV++G  YFE MT + GI P  EH+ CL++LL +AG  ++ M  +  
Sbjct: 400 TFIGLLNACTHGGLVEKGWLYFELMTQNYGIEPQIEHYGCLVDLLGRAGQFEEAMEVVRG 459

Query: 481 MPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLV 540
           M  E D  +W +L   C+IHG+ D+    + +LID +P +     +L++IY  LGK   V
Sbjct: 460 MRIEPDEVIWGSLLNGCKIHGHTDLAEFSIKKLIDMDPNNGGYGIMLANIYGELGKWDEV 519

Query: 541 EKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQL 590
            KVR+++ E+   K    SWIEI+N+VH F   D  HP  + +Y+ LE L
Sbjct: 520 RKVRKVLKEQNAHKTPGCSWIEIDNQVHQFYSVDKTHPRTEEIYNTLESL 569



 Score =  126 bits (316), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 95/364 (26%), Positives = 165/364 (45%), Gaps = 57/364 (15%)

Query: 58  ILQQCAESKSLKLGKRVHLH-LKLTQRKTPTTFLSNHLISMYFKCGSDVD-ARKVFDKIP 115
           +L+ C +       + VH   L+    + P   +   L+  Y +  SDV+ AR +FD++ 
Sbjct: 161 VLKSCTQVVGPGSARMVHCQVLRSGFEQYPV--VQTALLDAYLRFWSDVESARLLFDEMT 218

Query: 116 VKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKV 175
            +N+ S+  M+SGY  LG + +A  LF+ M ERDV SWN +I GY ++G   E L  ++ 
Sbjct: 219 ERNVVSWTAMISGYTRLGQIGNAVLLFEEMPERDVPSWNALIAGYTQNGLFMEALSLFR- 277

Query: 176 LRRFSISC---------NEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSI 226
            R  ++           N+ +    L+ C     L+L + +HG V   G   +  +S+++
Sbjct: 278 -RMIAVEAGAWGQGNRPNQVTAVCSLSACGHTGMLRLGKWIHGYVYRNGLGLDSFVSNAL 336

Query: 227 VDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWT 286
           VD Y KCG L +ARR+FD T  R + +W +M++  A  G  ++A  +F EM         
Sbjct: 337 VDMYGKCGCLKEARRVFDRTLERSLTSWNSMINCLALHGQSQNAISVFEEM--------M 388

Query: 287 TLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVH-GFLIR 345
           T  +G                     ++P++ TF   L AC       HG  V  G+L  
Sbjct: 389 TCGSG---------------------VKPDEVTFIGLLNACT------HGGLVEKGWLYF 421

Query: 346 TNFRSNTIV------MSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGY 399
                N  +         L+D+  + G   +  +V      + + ++W ++++    HG+
Sbjct: 422 ELMTQNYGIEPQIEHYGCLVDLLGRAGQFEEAMEVVRGMRIEPDEVIWGSLLNGCKIHGH 481

Query: 400 DEQA 403
            + A
Sbjct: 482 TDLA 485


>gi|125532999|gb|EAY79564.1| hypothetical protein OsI_34697 [Oryza sativa Indica Group]
          Length = 529

 Score =  350 bits (897), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 175/452 (38%), Positives = 286/452 (63%), Gaps = 6/452 (1%)

Query: 70  LGKRVHLHLKLT--QRKTP-TTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNML 126
           L  R+ L+++L   +R  P +T L+NHL+S+ F      DAR++F ++P+ ++ SYN ML
Sbjct: 75  LAGRLLLYVRLAGLKRLVPCSTQLANHLLSLNFLLRRPRDARRLFARMPLPDVCSYNAML 134

Query: 127 SGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISC--N 184
           +GYA L +   A  +F  M  RD++S+N  ++  A  G +++ +  Y  LR  S S   +
Sbjct: 135 AGYARLALAAPAAEVFAAMPHRDLLSYNATLLALAGGGEMQKAVALYSELRGTSTSLGYS 194

Query: 185 EFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFD 244
           + +F  +L  C KL + +L RQ+HG +++ GFLS++ I+SS+VD Y KC  ++DA  LF+
Sbjct: 195 DQTFLALLVGCEKLVDRELARQLHGHLILHGFLSDIRIASSLVDVYTKCVCIADAEDLFN 254

Query: 245 ETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALEL 304
           E   +    WTT+V GYA+ G + +A +LF++MP+KN +SW +L+ GY R+G   +AL +
Sbjct: 255 EMPVKSERMWTTLVCGYAEDGQLSTARRLFDQMPKKNILSWNSLMEGYVRHGQEAEALSI 314

Query: 305 FTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSK 364
           F  ++   + P+Q TFSSC  ACA++ +LK G+Q+HG L+RT F  N +++SSLIDMYS+
Sbjct: 315 FQHLIKEGVHPDQITFSSCFRACAAVCALKCGQQIHGRLLRTGFYPNVMILSSLIDMYSR 374

Query: 365 CGCLNDGRQVFDL-TDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLA 423
           CG L D RQVF L    K++++LWN ++ AL  HG+ ++ I  F  M+R   KPD  T  
Sbjct: 375 CGYLADARQVFSLAVQEKKDTLLWNALLGALCHHGHGQEVIGSFVQMIRERWKPDANTFL 434

Query: 424 VILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPY 483
            +L AC H  LV+EG+ +FE MT    I+P ++H+ CL++L +++   D+++  ++  P 
Sbjct: 435 TVLKACCHCNLVEEGIGFFELMTERYRIVPGEDHYVCLVDLFSRSSSHDKMVELIKSSPL 494

Query: 484 EHDSYLWNALHGVCRIHGNIDMGRKVVDQLID 515
                +W  L G C IHGN ++ +++ + + +
Sbjct: 495 LFRKQIWEILAGNCIIHGNSELLKQIEEHMAE 526


>gi|18854997|gb|AAL79689.1|AC087599_8 hypothetical protein [Oryza sativa Japonica Group]
 gi|31433572|gb|AAP55070.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|125575734|gb|EAZ17018.1| hypothetical protein OsJ_32505 [Oryza sativa Japonica Group]
          Length = 529

 Score =  350 bits (897), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 175/452 (38%), Positives = 286/452 (63%), Gaps = 6/452 (1%)

Query: 70  LGKRVHLHLKLT--QRKTP-TTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNML 126
           L  R+ L+++L   +R  P +T L+NHL+S+ F      DAR++F ++P+ ++ SYN ML
Sbjct: 75  LAGRLLLYVRLAGLKRLVPCSTQLANHLLSLNFLLRRPRDARRLFARMPLPDVCSYNAML 134

Query: 127 SGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISC--N 184
           +GYA L +   A  +F  M  RD++S+N  ++  A  G +++ +  Y  LR  S S   +
Sbjct: 135 AGYARLALAAPAAEVFAAMPHRDLLSYNATLLALAGGGEMQKAVALYSELRGTSTSLGYS 194

Query: 185 EFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFD 244
           + +F  +L  C KL + +L RQ+HG +++ GFLS++ I+SS+VD Y KC  ++DA  LF+
Sbjct: 195 DQTFLALLVGCEKLVDRELARQLHGHLILHGFLSDIRIASSLVDVYTKCVCIADAEDLFN 254

Query: 245 ETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALEL 304
           E   +    WTT+V GYA+ G + +A +LF++MP+KN +SW +L+ GY R+G   +AL +
Sbjct: 255 EMPVKSERMWTTLVCGYAEDGQLSTARRLFDQMPKKNILSWNSLMEGYVRHGQEAEALSI 314

Query: 305 FTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSK 364
           F  ++   + P+Q TFSSC  ACA++ +LK G+Q+HG L+RT F  N +++SSLIDMYS+
Sbjct: 315 FQHLIKEGVHPDQITFSSCFRACAAVCALKCGQQIHGRLLRTGFYPNVMILSSLIDMYSR 374

Query: 365 CGCLNDGRQVFDL-TDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLA 423
           CG L D RQVF L    K++++LWN ++ AL  HG+ ++ I  F  M+R   KPD  T  
Sbjct: 375 CGYLADARQVFSLAVQEKKDTLLWNALLGALCHHGHGQEVIGSFVQMIRERWKPDANTFL 434

Query: 424 VILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPY 483
            +L AC H  LV+EG+ +FE MT    I+P ++H+ CL++L +++   D+++  ++  P 
Sbjct: 435 TVLKACCHCNLVEEGIGFFELMTERYRIVPGEDHYVCLVDLFSRSSSHDKMVELIKSSPL 494

Query: 484 EHDSYLWNALHGVCRIHGNIDMGRKVVDQLID 515
                +W  L G C IHGN ++ +++ + + +
Sbjct: 495 LFRKQIWEILAGNCIIHGNSELLKQIEEHMAE 526


>gi|359478743|ref|XP_002282912.2| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
           mitochondrial-like [Vitis vinifera]
          Length = 642

 Score =  349 bits (896), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 172/477 (36%), Positives = 274/477 (57%), Gaps = 1/477 (0%)

Query: 118 NLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLR 177
           ++F  N ++    + G +  AR +FD    RD+VSWN+MI GY + G   E L FY+ ++
Sbjct: 141 DIFVSNAVIHLLVSCGDLDGARKMFDKSCVRDLVSWNSMINGYVRRGWAYEALNFYREMK 200

Query: 178 RFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELS 237
              I  +E +  G+++ C +LE+L L R+ H  +   G    V ++++++D Y KCG L 
Sbjct: 201 VEGIKPDEVTMIGVVSSCAQLEDLDLGRESHCYIEENGLKLTVPLANALMDMYMKCGNLE 260

Query: 238 DARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGL 297
            AR+LFD    + +++WTTMV GYA+ G ++ A KLF+EMP+K+ V W  +I GY     
Sbjct: 261 SARKLFDSMTNKTMVSWTTMVVGYAQSGLLDMAWKLFDEMPDKDVVPWNAMIGGYVHANR 320

Query: 298 GQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSS 357
           G++AL LF  M  + I P++ T  SCL AC+ + +L  G  +H ++ +     N  + ++
Sbjct: 321 GKEALALFNEMQAMNINPDEVTMVSCLSACSQLGALDVGIWIHHYIEKHELSLNVALGTA 380

Query: 358 LIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKP 417
           LIDMY+KCG +    QVF     + NS+ W  +IS L  HG    AI  F +M+ +SV P
Sbjct: 381 LIDMYAKCGKITKAIQVFQELPGR-NSLTWTAIISGLALHGNAHGAIAYFSEMIDNSVMP 439

Query: 418 DKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQ 477
           D++T   +L+AC H GLV+EG  YF  M+    + P  +H++C+++LL +AG  ++    
Sbjct: 440 DEVTFLGLLSACCHGGLVEEGRKYFSQMSSKFNLSPKLKHYSCMVDLLGRAGLLEEAEEL 499

Query: 478 LEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKG 537
           ++ MP E D+ +W AL   CRIHGN+ MG +   +L+  +P  S  + LL+++Y      
Sbjct: 500 IKSMPIEADAVVWGALFFACRIHGNVLMGERAASKLLQMDPHDSGIYVLLANMYGEAEMW 559

Query: 538 RLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQM 594
           +   K R+L+ +R  +K    S IE+   V+ F V D  HP  + +Y  L QL  Q+
Sbjct: 560 KEAGKARKLMRQRGVEKTPGCSSIEVNGIVYEFIVRDKSHPQSEQIYECLIQLTRQL 616



 Score =  159 bits (402), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 97/372 (26%), Positives = 177/372 (47%), Gaps = 33/372 (8%)

Query: 28  ISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPT 87
           + +G   EA++    +   GI+    T+  ++  CA+ + L LG+  H +++    K  T
Sbjct: 184 VRRGWAYEALNFYREMKVEGIKPDEVTMIGVVSSCAQLEDLDLGRESHCYIEENGLKL-T 242

Query: 88  TFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAE 147
             L+N L+ MY KCG+   ARK+FD +  K + S+  M+ GYA  G++  A  LFD M +
Sbjct: 243 VPLANALMDMYMKCGNLESARKLFDSMTNKTMVSWTTMVVGYAQSGLLDMAWKLFDEMPD 302

Query: 148 RDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQV 207
           +DVV WN MI GY  +   +E L  +  ++  +I+ +E +    L+ C +L  L +   +
Sbjct: 303 KDVVPWNAMIGGYVHANRGKEALALFNEMQAMNINPDEVTMVSCLSACSQLGALDVGIWI 362

Query: 208 HGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDM 267
           H  +       NV + ++++D YAKCG+++ A ++F E   R+ LTWT ++SG A  G+ 
Sbjct: 363 HHYIEKHELSLNVALGTALIDMYAKCGKITKAIQVFQELPGRNSLTWTAIISGLALHGNA 422

Query: 268 ESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCAC 327
             A   F+EM + +                               + P++ TF   L AC
Sbjct: 423 HGAIAYFSEMIDNS-------------------------------VMPDEVTFLGLLSAC 451

Query: 328 ASIVSLKHGKQVHGFL-IRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSML 386
                ++ G++    +  + N        S ++D+  + G L +  ++      + ++++
Sbjct: 452 CHGGLVEEGRKYFSQMSSKFNLSPKLKHYSCMVDLLGRAGLLEEAEELIKSMPIEADAVV 511

Query: 387 WNTMISALTQHG 398
           W  +  A   HG
Sbjct: 512 WGALFFACRIHG 523



 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 107/455 (23%), Positives = 200/455 (43%), Gaps = 76/455 (16%)

Query: 135 MKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYK-VLRRFSISCNEFSFAGILT 193
           + +  N+  N    +  SWN  I G+  S    E +  YK VL+      + +++  +  
Sbjct: 56  LDYCTNILFNTRNPNTFSWNVAIRGFLDSENPREAVVLYKRVLQCDGTKPDNYTYPLLFK 115

Query: 194 ICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLT 253
            C +L  +++  ++ G VL  GF S++ +S++++     CG+L  AR++FD++  RD+++
Sbjct: 116 ACARLSLIRMGSEILGHVLHLGFDSDIFVSNAVIHLLVSCGDLDGARKMFDKSCVRDLVS 175

Query: 254 WTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRI 313
           W +M++G                               Y R G   +AL  +  M +  I
Sbjct: 176 WNSMING-------------------------------YVRRGWAYEALNFYREMKVEGI 204

Query: 314 RPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQ 373
           +P++ T    + +CA +  L  G++ H ++     +    + ++L+DMY KCG L   R+
Sbjct: 205 KPDEVTMIGVVSSCAQLEDLDLGRESHCYIEENGLKLTVPLANALMDMYMKCGNLESARK 264

Query: 374 VFDLTDNK------------------------------ENSMLWNTMISALTQHGYDEQA 403
           +FD   NK                              ++ + WN MI         ++A
Sbjct: 265 LFDSMTNKTMVSWTTMVVGYAQSGLLDMAWKLFDEMPDKDVVPWNAMIGGYVHANRGKEA 324

Query: 404 IRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLT---YFESMTHDLGIIPNQEHHAC 460
           + LF++M   ++ PD++T+   L+AC+  G +  G+    Y E   H+L +  N      
Sbjct: 325 LALFNEMQAMNINPDEVTMVSCLSACSQLGALDVGIWIHHYIEK--HELSL--NVALGTA 380

Query: 461 LIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQN--P 518
           LI++ A+ G   + +   +++P   +S  W A+     +HGN         ++ID +  P
Sbjct: 381 LIDMYAKCGKITKAIQVFQELP-GRNSLTWTAIISGLALHGNAHGAIAYFSEMIDNSVMP 439

Query: 519 QSSATHGLLSSIYSALGKGRLVEKVRQLINERQFK 553
                 GLL    SA   G LVE+ R+  ++   K
Sbjct: 440 DEVTFLGLL----SACCHGGLVEEGRKYFSQMSSK 470


>gi|224092370|ref|XP_002309579.1| predicted protein [Populus trichocarpa]
 gi|222855555|gb|EEE93102.1| predicted protein [Populus trichocarpa]
          Length = 854

 Score =  349 bits (895), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 182/553 (32%), Positives = 309/553 (55%), Gaps = 12/553 (2%)

Query: 28  ISKGQLSEAISSLDLLAQRGIRLPAE-TLAFILQQCAESKSLKLGKRVHLHL---KLTQR 83
           + KG   EA+   D +   G+ LP E T+  ++  CA+ K L++GKR+HL++   KL  R
Sbjct: 210 VLKGMYREALDLFDEMLVSGV-LPDEITMVSLVSTCAKLKDLEMGKRLHLYIVDNKLWIR 268

Query: 84  KTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVK--NLFSYNNMLSGYANLGMMKHARNL 141
            +    L N L+ MY KCG   +A  +  +      ++  +  ++SGY     +  AR L
Sbjct: 269 GS----LLNCLVDMYSKCGKMDEAHGLLSRCDESEVDVVLWTTLVSGYVKSNKIDKARQL 324

Query: 142 FDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEEL 201
           FD M ER +VSW TM+ GY + G   E L+ ++ +R  ++  +E +   +L+ CV LE+ 
Sbjct: 325 FDKMNERSLVSWTTMMSGYVQGGYYCESLELFQQMRFENVIPDEVALVTVLSACVHLEDF 384

Query: 202 KLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGY 261
            L R VH  ++  G L +  + ++++D YAKCG+L +A R F++   +   +W +M+ G+
Sbjct: 385 DLGRSVHAFIVTYGMLVDGFLGNALLDLYAKCGKLDEALRTFEQLPCKSAASWNSMLDGF 444

Query: 262 AKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFS 321
            + G ++ A   FN++PEK+ VSW T++  Y ++ L  ++ E+F +M    ++P++ T  
Sbjct: 445 CRSGGVDKARDFFNKIPEKDIVSWNTMVNAYVKHDLFNESFEIFCKMQSSNVKPDKTTLI 504

Query: 322 SCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNK 381
           S L +CA + +L HG  V+ ++ +     + ++ ++LIDMY KCGC+    ++F     K
Sbjct: 505 SLLSSCAKVGALNHGIWVNVYIEKNEIGIDAMLGTALIDMYGKCGCVEMAYEIFTQIIEK 564

Query: 382 ENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTY 441
            N  +W  M++A    G   +AI L+ +M    VKPD +T   +L AC+H GLV EG  Y
Sbjct: 565 -NVFVWTAMMAAYAMEGQALEAIDLYLEMEERGVKPDHVTFIALLAACSHGGLVDEGYKY 623

Query: 442 FESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHG 501
           F  +     IIP   H+ C+++LL + G  ++ +  +E+MP E D  +W++L   CR H 
Sbjct: 624 FNKLRSFYNIIPTIHHYGCMVDLLGRVGHLEETVKFIERMPIEPDVSIWSSLMRACRSHH 683

Query: 502 NIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWI 561
           N+++  +   QLI+ +P ++  H LLS+IY+  G+   V KVR  ++E    K+   + I
Sbjct: 684 NVELAEQAFKQLIEIDPTNNGAHVLLSNIYADAGRWDDVSKVRTKLHETGVPKQPGFTMI 743

Query: 562 EIENKVHAFSVSD 574
           E    VH F  S+
Sbjct: 744 EQNGVVHEFVASN 756



 Score =  209 bits (531), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 142/562 (25%), Positives = 260/562 (46%), Gaps = 77/562 (13%)

Query: 28  ISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPT 87
           + +G   E +     +  +G+ L   T  F++  C ++  +KLG  VH  +         
Sbjct: 109 LKEGCPQEVLECYYHMVTQGVLLDISTFHFLIHACCKNFDVKLGSEVHGRI--------- 159

Query: 88  TFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAE 147
                       KCG              +N    NN++  Y+  G +K    LF+ M  
Sbjct: 160 -----------LKCGFG------------RNKSLNNNLMGLYSKCGKLKEVCQLFEKMTH 196

Query: 148 RDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQV 207
           RDV+SWNTMI  Y   G   E L  +  +    +  +E +   +++ C KL++L++ +++
Sbjct: 197 RDVISWNTMISCYVLKGMYREALDLFDEMLVSGVLPDEITMVSLVSTCAKLKDLEMGKRL 256

Query: 208 HGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDAR--DVLTWTTMVSGYAKLG 265
           H  ++         + + +VD Y+KCG++ +A  L    D    DV+ WTT+VSGY K  
Sbjct: 257 HLYIVDNKLWIRGSLLNCLVDMYSKCGKMDEAHGLLSRCDESEVDVVLWTTLVSGYVKSN 316

Query: 266 DMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLC 325
            ++ A +LF++M E++ VSWTT+++GY + G   ++LELF +M    + P++    + L 
Sbjct: 317 KIDKARQLFDKMNERSLVSWTTMMSGYVQGGYYCESLELFQQMRFENVIPDEVALVTVLS 376

Query: 326 ACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKE--- 382
           AC  +     G+ VH F++      +  + ++L+D+Y+KCG L++  + F+    K    
Sbjct: 377 ACVHLEDFDLGRSVHAFIVTYGMLVDGFLGNALLDLYAKCGKLDEALRTFEQLPCKSAAS 436

Query: 383 -NSML--------------------------WNTMISALTQHGYDEQAIRLFHDMVRSSV 415
            NSML                          WNTM++A  +H    ++  +F  M  S+V
Sbjct: 437 WNSMLDGFCRSGGVDKARDFFNKIPEKDIVSWNTMVNAYVKHDLFNESFEIFCKMQSSNV 496

Query: 416 KPDKITLAVILNACTHSGLVQEGL---TYFESMTHDLGIIPNQEHHACLIELLAQAGCSD 472
           KPDK TL  +L++C   G +  G+    Y E   +++GI  +      LI++  + GC  
Sbjct: 497 KPDKTTLISLLSSCAKVGALNHGIWVNVYIEK--NEIGI--DAMLGTALIDMYGKCGCV- 551

Query: 473 QLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQS-SATHGLLSSIY 531
           ++  ++     E + ++W A+     + G      + +D  ++   +     H    ++ 
Sbjct: 552 EMAYEIFTQIIEKNVFVWTAMMAAYAMEGQ---ALEAIDLYLEMEERGVKPDHVTFIALL 608

Query: 532 SALGKGRLVEKVRQLINE-RQF 552
           +A   G LV++  +  N+ R F
Sbjct: 609 AACSHGGLVDEGYKYFNKLRSF 630



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 102/411 (24%), Positives = 193/411 (46%), Gaps = 69/411 (16%)

Query: 147 ERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQ 206
           E + + WNT++    K G  +E L+ Y  +    +  +  +F  ++  C K  ++KL  +
Sbjct: 95  EPESIIWNTLLENKLKEGCPQEVLECYYHMVTQGVLLDISTFHFLIHACCKNFDVKLGSE 154

Query: 207 VHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGD 266
           VHG++L  GF  N  ++++++  Y+KCG+L +  +LF++   RDV++W TM+S Y     
Sbjct: 155 VHGRILKCGFGRNKSLNNNLMGLYSKCGKLKEVCQLFEKMTHRDVISWNTMISCY----- 209

Query: 267 MESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCA 326
                                        G+ ++AL+LF  M++  + P++ T  S +  
Sbjct: 210 --------------------------VLKGMYREALDLFDEMLVSGVLPDEITMVSLVST 243

Query: 327 CASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLND---------------- 370
           CA +  L+ GK++H +++         +++ L+DMYSKCG +++                
Sbjct: 244 CAKLKDLEMGKRLHLYIVDNKLWIRGSLLNCLVDMYSKCGKMDEAHGLLSRCDESEVDVV 303

Query: 371 -----------------GRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRS 413
                             RQ+FD   N+ + + W TM+S   Q GY  +++ LF  M   
Sbjct: 304 LWTTLVSGYVKSNKIDKARQLFDKM-NERSLVSWTTMMSGYVQGGYYCESLELFQQMRFE 362

Query: 414 SVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQ 473
           +V PD++ L  +L+AC H      G +   +     G++ +      L++L A+ G  D+
Sbjct: 363 NVIPDEVALVTVLSACVHLEDFDLGRS-VHAFIVTYGMLVDGFLGNALLDLYAKCGKLDE 421

Query: 474 LMNQLEKMPYEHDSYLWNA-LHGVCRIHGNIDMGRKVVDQLIDQNPQSSAT 523
            +   E++P +  +  WN+ L G CR  G +D  R   +++ +++  S  T
Sbjct: 422 ALRTFEQLPCK-SAASWNSMLDGFCR-SGGVDKARDFFNKIPEKDIVSWNT 470



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 68/265 (25%), Positives = 129/265 (48%), Gaps = 11/265 (4%)

Query: 264 LGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSC 323
           + +++ A ++ +   E   + W TL+    + G  Q+ LE +  M+   +  +  TF   
Sbjct: 80  VNNLDCAHQILSYSHEPESIIWNTLLENKLKEGCPQEVLECYYHMVTQGVLLDISTFHFL 139

Query: 324 LCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKEN 383
           + AC     +K G +VHG +++  F  N  + ++L+ +YSKCG L +  Q+F+   +++ 
Sbjct: 140 IHACCKNFDVKLGSEVHGRILKCGFGRNKSLNNNLMGLYSKCGKLKEVCQLFEKMTHRD- 198

Query: 384 SMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEG----L 439
            + WNTMIS     G   +A+ LF +M+ S V PD+IT+  +++ C     ++ G    L
Sbjct: 199 VISWNTMISCYVLKGMYREALDLFDEMLVSGVLPDEITMVSLVSTCAKLKDLEMGKRLHL 258

Query: 440 TYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKM-PYEHDSYLWNALHGVCR 498
              ++     G + N     CL+++ ++ G  D+    L +    E D  LW  L     
Sbjct: 259 YIVDNKLWIRGSLLN-----CLVDMYSKCGKMDEAHGLLSRCDESEVDVVLWTTLVSGYV 313

Query: 499 IHGNIDMGRKVVDQLIDQNPQSSAT 523
               ID  R++ D++ +++  S  T
Sbjct: 314 KSNKIDKARQLFDKMNERSLVSWTT 338


>gi|359482718|ref|XP_002263673.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g09950-like [Vitis vinifera]
          Length = 1088

 Score =  348 bits (894), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 181/586 (30%), Positives = 319/586 (54%), Gaps = 38/586 (6%)

Query: 10  INRKNLPNNCLIQSFLSLISKGQLSEAISSL-DLLAQRGIRLPAETLAFILQQCAESKSL 68
           + R  +  N L+  +   + +G+  EA+    D+ ++ GI+    T   +L  CA  ++ 
Sbjct: 439 LERNEVSYNALLAGY---VQEGKAEEALELYHDMQSEDGIQPDQFTFTTLLTLCANQRND 495

Query: 69  KLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSG 128
             G+++H HL +    T    +   L+ MY +CG                          
Sbjct: 496 NQGRQIHAHL-IRANITKNIIVETELVHMYSECGR------------------------- 529

Query: 129 YANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSF 188
                 + +A+ +F+ MAER+  SWN+MI GY ++G  +E L+ +K ++   I  + FS 
Sbjct: 530 ------LNYAKEIFNRMAERNAYSWNSMIEGYQQNGETQEALRLFKQMQLNGIKPDCFSL 583

Query: 189 AGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDA 248
           + +L+ CV L + +  R++H  ++        ++   +VD YAKCG +  A +++D+T  
Sbjct: 584 SSMLSSCVSLSDSQKGRELHNFIVRNTMEEEGILQVVLVDMYAKCGSMDYAWKVYDQTIK 643

Query: 249 RDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRM 308
           +DV+    MVS +   G    A  LF++M ++N   W +++AGY   GL +++   F  M
Sbjct: 644 KDVILNNVMVSAFVNSGRANDAKNLFDQMEQRNTALWNSILAGYANKGLKKESFNHFLEM 703

Query: 309 MILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVM-SSLIDMYSKCGC 367
           +   I  +  T  + +  C+S+ +L+HG Q+H  +I+  F + ++V+ ++L+DMYSKCG 
Sbjct: 704 LESDIEYDVLTMVTIVNLCSSLPALEHGDQLHSLIIKKGFVNCSVVLETALVDMYSKCGA 763

Query: 368 LNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILN 427
           +   R VFD   N +N + WN MIS  ++HG  ++A+ L+ +M +  + P+++T   IL+
Sbjct: 764 ITKARTVFD-NMNGKNIVSWNAMISGYSKHGCSKEALILYEEMPKKGMYPNEVTFLAILS 822

Query: 428 ACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDS 487
           AC+H+GLV+EGL  F SM  D  I    EH+ C+++LL +AG  +     +EKMP E + 
Sbjct: 823 ACSHTGLVEEGLRIFTSMQEDYNIEAKAEHYTCMVDLLGRAGRLEDAKEFVEKMPIEPEV 882

Query: 488 YLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLI 547
             W AL G CR+H ++DMGR    +L + +PQ+   + ++S+IY+A G+ + VE +RQ++
Sbjct: 883 STWGALLGACRVHKDMDMGRLAAQRLFELDPQNPGPYVIMSNIYAAAGRWKEVEDIRQMM 942

Query: 548 NERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQ 593
             +  KK+  +SWIEI +++  F      HP  + +Y+ L  L  Q
Sbjct: 943 KMKGVKKDPGVSWIEINSEIQIFHAGSKTHPKTEEIYNNLRHLTLQ 988



 Score =  176 bits (446), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 137/551 (24%), Positives = 233/551 (42%), Gaps = 114/551 (20%)

Query: 50  LPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARK 109
           LP  +L   +Q C +S S + GK +H  + ++    P  +L   ++ +Y + G       
Sbjct: 72  LPYSSL---IQDCIDSNSFQRGKSIHTQM-ISNGYNPDAYLMTKILMLYARSGC------ 121

Query: 110 VFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEG 169
                                 L  + +AR LF+ M ER++ +WNTMI+ YA+     E 
Sbjct: 122 ----------------------LDDLCYARKLFEEMPERNLTAWNTMILAYARVDDYMEV 159

Query: 170 LKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDA 229
           L+ Y  +R      ++F+F  ++  C+ +E++   RQ+   V+  G   N+ +  ++VD 
Sbjct: 160 LRLYGRMRGSGNFSDKFTFPSVIKACIAMEDMGGVRQLQSSVVKAGLNCNLFVGGALVDG 219

Query: 230 YAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLI 289
           YA+ G + DA    DE +   V+TW  +++GY K+                  +SW    
Sbjct: 220 YARFGWMDDAVTSLDEIEGTSVVTWNAVIAGYVKI------------------LSW---- 257

Query: 290 AGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFR 349
                    ++A  +F RM+ + + P+  TF+S L  C ++ S   GKQVH  LI   F+
Sbjct: 258 ---------EEAWGIFDRMLKIGVCPDNFTFASALRVCGALRSRDGGKQVHSKLIACGFK 308

Query: 350 SNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHD 409
            +T V ++LIDMY+KC       +VFD    + N + WN++ISA  Q G+   A+ LF  
Sbjct: 309 GDTFVGNALIDMYAKCDDEESCLKVFDEMGER-NQVTWNSIISAEAQFGHFNDALVLFLR 367

Query: 410 MVRSSVKPDKITLAVILNAC-----------------------------------THSGL 434
           M  S  K ++  L  IL A                                    +  G+
Sbjct: 368 MQESGYKSNRFNLGSILMASAGLADIGKGRELHGHLVRNLLNSDIILGSALVDMYSKCGM 427

Query: 435 VQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEH----DSYLW 490
           V+E    F S+        N+  +  L+    Q G +++ +     M  E     D + +
Sbjct: 428 VEEAHQVFRSLLER-----NEVSYNALLAGYVQEGKAEEALELYHDMQSEDGIQPDQFTF 482

Query: 491 NALHGVCRIHGNIDMGRKVVDQLIDQN-PQSSATHGLLSSIYSALGKGRLVEKVRQLINE 549
             L  +C    N + GR++   LI  N  ++      L  +YS  G+    +++   + E
Sbjct: 483 TTLLTLCANQRNDNQGRQIHAHLIRANITKNIIVETELVHMYSECGRLNYAKEIFNRMAE 542

Query: 550 RQFKKEQAISW 560
           R      A SW
Sbjct: 543 R-----NAYSW 548



 Score =  172 bits (436), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 116/421 (27%), Positives = 199/421 (47%), Gaps = 66/421 (15%)

Query: 18  NCLIQSFLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLH 77
           N +I  ++ ++S     EA    D + + G+     T A  L+ C   +S   GK+VH  
Sbjct: 245 NAVIAGYVKILS---WEEAWGIFDRMLKIGVCPDNFTFASALRVCGALRSRDGGKQVHSK 301

Query: 78  LKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKH 137
           L     K   TF+ N LI MY KC  +    KVFD++  +N  ++N+++S  A  G    
Sbjct: 302 LIACGFKG-DTFVGNALIDMYAKCDDEESCLKVFDEMGERNQVTWNSIISAEAQFGHFND 360

Query: 138 ARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVK 197
           A  LF  M E           GY                       N F+   IL     
Sbjct: 361 ALVLFLRMQES----------GYKS---------------------NRFNLGSILMASAG 389

Query: 198 LEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTM 257
           L ++   R++HG ++     S++++ S++VD Y+KCG + +A ++F     R+ +++  +
Sbjct: 390 LADIGKGRELHGHLVRNLLNSDIILGSALVDMYSKCGMVEEAHQVFRSLLERNEVSYNAL 449

Query: 258 VSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQ 317
           ++GY + G  E A +L+++M  ++                               I+P+Q
Sbjct: 450 LAGYVQEGKAEEALELYHDMQSEDG------------------------------IQPDQ 479

Query: 318 HTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDL 377
            TF++ L  CA+  +   G+Q+H  LIR N   N IV + L+ MYS+CG LN  +++F+ 
Sbjct: 480 FTFTTLLTLCANQRNDNQGRQIHAHLIRANITKNIIVETELVHMYSECGRLNYAKEIFNR 539

Query: 378 TDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQE 437
              + N+  WN+MI    Q+G  ++A+RLF  M  + +KPD  +L+ +L++C      Q+
Sbjct: 540 MAER-NAYSWNSMIEGYQQNGETQEALRLFKQMQLNGIKPDCFSLSSMLSSCVSLSDSQK 598

Query: 438 G 438
           G
Sbjct: 599 G 599



 Score =  166 bits (420), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 104/378 (27%), Positives = 176/378 (46%), Gaps = 37/378 (9%)

Query: 118 NLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLR 177
           NLF    ++ GYA  G M  A    D +    VV+WN +I GY K  + EE    +  + 
Sbjct: 209 NLFVGGALVDGYARFGWMDDAVTSLDEIEGTSVVTWNAVIAGYVKILSWEEAWGIFDRML 268

Query: 178 RFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELS 237
           +  +  + F+FA  L +C  L      +QVH +++  GF  +  + ++++D YAKC +  
Sbjct: 269 KIGVCPDNFTFASALRVCGALRSRDGGKQVHSKLIACGFKGDTFVGNALIDMYAKCDDEE 328

Query: 238 DARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGL 297
              ++FDE   R+ +TW +++S  A+ G        FN+                     
Sbjct: 329 SCLKVFDEMGERNQVTWNSIISAEAQFGH-------FND--------------------- 360

Query: 298 GQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSS 357
              AL LF RM     + N+    S L A A +  +  G+++HG L+R    S+ I+ S+
Sbjct: 361 ---ALVLFLRMQESGYKSNRFNLGSILMASAGLADIGKGRELHGHLVRNLLNSDIILGSA 417

Query: 358 LIDMYSKCGCLNDGRQVF-DLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDM-VRSSV 415
           L+DMYSKCG + +  QVF  L +  E S  +N +++   Q G  E+A+ L+HDM     +
Sbjct: 418 LVDMYSKCGMVEEAHQVFRSLLERNEVS--YNALLAGYVQEGKAEEALELYHDMQSEDGI 475

Query: 416 KPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLM 475
           +PD+ T   +L  C +     +G      +     I  N      L+ + ++ G  +   
Sbjct: 476 QPDQFTFTTLLTLCANQRNDNQGRQIHAHLIR-ANITKNIIVETELVHMYSECGRLNYAK 534

Query: 476 NQLEKMPYEHDSYLWNAL 493
               +M  E ++Y WN++
Sbjct: 535 EIFNRMA-ERNAYSWNSM 551



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 54/249 (21%), Positives = 106/249 (42%), Gaps = 35/249 (14%)

Query: 184 NEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSD---AR 240
           N   ++ ++  C+     +  + +H Q++  G+  +  + + I+  YA+ G L D   AR
Sbjct: 70  NPLPYSSLIQDCIDSNSFQRGKSIHTQMISNGYNPDAYLMTKILMLYARSGCLDDLCYAR 129

Query: 241 RLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQK 300
           +LF+E   R++  W TM+  YA++ D     +L+  M      S                
Sbjct: 130 KLFEEMPERNLTAWNTMILAYARVDDYMEVLRLYGRMRGSGNFS---------------- 173

Query: 301 ALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLID 360
                          ++ TF S + AC ++  +   +Q+   +++     N  V  +L+D
Sbjct: 174 ---------------DKFTFPSVIKACIAMEDMGGVRQLQSSVVKAGLNCNLFVGGALVD 218

Query: 361 MYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKI 420
            Y++ G ++D     D  +   + + WN +I+   +    E+A  +F  M++  V PD  
Sbjct: 219 GYARFGWMDDAVTSLDEIEGT-SVVTWNAVIAGYVKILSWEEAWGIFDRMLKIGVCPDNF 277

Query: 421 TLAVILNAC 429
           T A  L  C
Sbjct: 278 TFASALRVC 286



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 48/185 (25%), Positives = 86/185 (46%), Gaps = 14/185 (7%)

Query: 316 NQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLND---GR 372
           N   +SS +  C    S + GK +H  +I   +  +  +M+ ++ +Y++ GCL+D    R
Sbjct: 70  NPLPYSSLIQDCIDSNSFQRGKSIHTQMISNGYNPDAYLMTKILMLYARSGCLDDLCYAR 129

Query: 373 QVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHS 432
           ++F+    + N   WNTMI A  +     + +RL+  M  S    DK T   ++ AC   
Sbjct: 130 KLFEEMPER-NLTAWNTMILAYARVDDYMEVLRLYGRMRGSGNFSDKFTFPSVIKAC--- 185

Query: 433 GLVQE---GLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYL 489
            +  E   G+   +S     G+  N      L++  A+ G  D  +  L+++  E  S +
Sbjct: 186 -IAMEDMGGVRQLQSSVVKAGLNCNLFVGGALVDGYARFGWMDDAVTSLDEI--EGTSVV 242

Query: 490 -WNAL 493
            WNA+
Sbjct: 243 TWNAV 247


>gi|357521591|ref|XP_003631084.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355525106|gb|AET05560.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 980

 Score =  348 bits (894), Expect = 4e-93,   Method: Compositional matrix adjust.
 Identities = 167/493 (33%), Positives = 280/493 (56%), Gaps = 40/493 (8%)

Query: 106 DARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGA 165
           DAR +FDK+PV++  S+N M+SGYA  G +  AR LFD    RDV +W  M+ GY ++G 
Sbjct: 222 DARWLFDKMPVRDAISWNTMISGYAQGGGLSQARRLFDESPTRDVFTWTAMVSGYVQNGM 281

Query: 166 VEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSS 225
           ++E   F+                         +E+    +V    ++ G          
Sbjct: 282 LDEAKTFF-------------------------DEMPEKNEVSYNAMIAG---------- 306

Query: 226 IVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSW 285
               Y +  ++  AR LF+    R++ +W TM++GY ++GD+  A K F+ MP+++ VSW
Sbjct: 307 ----YVQTKKMDIARELFESMPCRNISSWNTMITGYGQIGDIAQARKFFDMMPQRDCVSW 362

Query: 286 TTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIR 345
             +IAGY ++G  ++AL +F  +       N+ TF   L  CA I +L+ GKQ+HG  ++
Sbjct: 363 AAIIAGYAQSGHYEEALNMFVEIKQDGESLNRATFGCALSTCADIAALELGKQIHGQAVK 422

Query: 346 TNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIR 405
             + +   V ++L+ MY KCG +++    F+  + K+  + WNTM++   +HG+  QA+ 
Sbjct: 423 MGYGTGCFVGNALLAMYFKCGSIDEANDTFEGIEEKD-VVSWNTMLAGYARHGFGRQALT 481

Query: 406 LFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELL 465
           +F  M  + VKPD+IT+  +L+AC+H+GL+  G  YF SMT D G+IP  +H+ C+I+LL
Sbjct: 482 VFESMKTAGVKPDEITMVGVLSACSHTGLLDRGTEYFYSMTKDYGVIPTSKHYTCMIDLL 541

Query: 466 AQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHG 525
            +AG  ++  + +  MP++  +  W AL G  RIHGN ++G K  + +    PQ+S  + 
Sbjct: 542 GRAGRLEEAQDLIRNMPFQPGAASWGALLGASRIHGNTELGEKAAEMVFKMEPQNSGMYV 601

Query: 526 LLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYS 585
           LLS++Y+A G+    +K+R  + +   +K    SW+E++NK+H FSV D  HP ++ +Y+
Sbjct: 602 LLSNLYAASGRWVDADKMRSKMRDIGVQKVPGYSWVEVQNKIHTFSVGDCSHPEKERIYA 661

Query: 586 VLEQLAGQMGEDA 598
            LE+L  +M E+ 
Sbjct: 662 YLEELDLKMREEG 674



 Score =  163 bits (412), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 112/379 (29%), Positives = 180/379 (47%), Gaps = 65/379 (17%)

Query: 83  RKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLF 142
           R++  ++  N +IS Y +      AR +FD++P ++LFS+N ML+GY     +  AR LF
Sbjct: 77  RRSSVSY--NAMISGYLRNSKFNLARNLFDQMPERDLFSWNVMLTGYVRNCRLGDARRLF 134

Query: 143 DNMAERDVVSWNTMIIGYAKSGAVEEGLK-FYKVLRRFSISCNEFSFA-----GILTICV 196
           D M E+DVVSWN+++ GYA++G V+E  + F  +  + SIS N    A      I   C+
Sbjct: 135 DLMPEKDVVSWNSLLSGYAQNGYVDEAREVFDNMPEKNSISWNGLLAAYVHNGRIEEACL 194

Query: 197 KLEELKLTRQVHGQVLVTGF-----------------LSNVVISSSIVDAYAKCGELSDA 239
             E       +    L+ GF                 + + +  ++++  YA+ G LS A
Sbjct: 195 LFESKSDWDLISWNCLMGGFVRKKKLGDARWLFDKMPVRDAISWNTMISGYAQGGGLSQA 254

Query: 240 RRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQ 299
           RRLFDE+  RDV TWT MVSGY + G ++ A   F+EMPEKN VS+  +IAGY +     
Sbjct: 255 RRLFDESPTRDVFTWTAMVSGYVQNGMLDEAKTFFDEMPEKNEVSYNAMIAGYVQTKKMD 314

Query: 300 KALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLI 359
            A ELF  M                  C +I S                       +++I
Sbjct: 315 IARELFESM-----------------PCRNISSW----------------------NTMI 335

Query: 360 DMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDK 419
             Y + G +   R+ FD+   ++  + W  +I+   Q G+ E+A+ +F ++ +     ++
Sbjct: 336 TGYGQIGDIAQARKFFDMMPQRD-CVSWAAIIAGYAQSGHYEEALNMFVEIKQDGESLNR 394

Query: 420 ITLAVILNACTHSGLVQEG 438
            T    L+ C     ++ G
Sbjct: 395 ATFGCALSTCADIAALELG 413



 Score =  139 bits (349), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 100/416 (24%), Positives = 177/416 (42%), Gaps = 75/416 (18%)

Query: 18  NCLIQSFLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLH 77
           NCL+  F   + K +L +A    D +  R     A +   ++   A+   L   +R+   
Sbjct: 208 NCLMGGF---VRKKKLGDARWLFDKMPVR----DAISWNTMISGYAQGGGLSQARRL--- 257

Query: 78  LKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKH 137
               +  T   F    ++S Y + G   +A+  FD++P KN  SYN M++GY     M  
Sbjct: 258 --FDESPTRDVFTWTAMVSGYVQNGMLDEAKTFFDEMPEKNEVSYNAMIAGYVQTKKMDI 315

Query: 138 ARNLFDNMAERDVVSWNTMII-------------------------------GYAKSGAV 166
           AR LF++M  R++ SWNTMI                                GYA+SG  
Sbjct: 316 ARELFESMPCRNISSWNTMITGYGQIGDIAQARKFFDMMPQRDCVSWAAIIAGYAQSGHY 375

Query: 167 EEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSI 226
           EE L  +  +++   S N  +F   L+ C  +  L+L +Q+HGQ +  G+ +   + +++
Sbjct: 376 EEALNMFVEIKQDGESLNRATFGCALSTCADIAALELGKQIHGQAVKMGYGTGCFVGNAL 435

Query: 227 VDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWT 286
           +  Y KCG + +A   F+  + +DV++W TM++GYA                        
Sbjct: 436 LAMYFKCGSIDEANDTFEGIEEKDVVSWNTMLAGYA------------------------ 471

Query: 287 TLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRT 346
                  R+G G++AL +F  M    ++P++ T    L AC+    L  G +    + + 
Sbjct: 472 -------RHGFGRQALTVFESMKTAGVKPDEITMVGVLSACSHTGLLDRGTEYFYSMTKD 524

Query: 347 -NFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDE 401
                 +   + +ID+  + G L + + +      +  +  W  ++ A   HG  E
Sbjct: 525 YGVIPTSKHYTCMIDLLGRAGRLEEAQDLIRNMPFQPGAASWGALLGASRIHGNTE 580



 Score =  112 bits (279), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 99/378 (26%), Positives = 166/378 (43%), Gaps = 64/378 (16%)

Query: 149 DVVSWNTMIIGYAKSGAVEEGLKFYKVL-RRFSISCNEFSFAGILTICVKLEELKLTRQV 207
           D++ WN  I  + ++G  +  L  +  + RR S+S N      +++  ++  +  L R +
Sbjct: 48  DILKWNKAISTHMRNGHCDSALHVFNTMPRRSSVSYN-----AMISGYLRNSKFNLARNL 102

Query: 208 HGQVLVTGFLS-NVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGD 266
             Q+      S NV+++      Y +   L DARRLFD    +DV++W +++SGYA+ G 
Sbjct: 103 FDQMPERDLFSWNVMLT-----GYVRNCRLGDARRLFDLMPEKDVVSWNSLLSGYAQNGY 157

Query: 267 MESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCA 326
           ++ A ++F+ MPEKN +SW  L+A Y  NG  ++A                     CL  
Sbjct: 158 VDEAREVFDNMPEKNSISWNGLLAAYVHNGRIEEA---------------------CL-- 194

Query: 327 CASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSML 386
                           L  +    + I  + L+  + +   L D R +FD    ++ ++ 
Sbjct: 195 ----------------LFESKSDWDLISWNCLMGGFVRKKKLGDARWLFDKMPVRD-AIS 237

Query: 387 WNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMT 446
           WNTMIS   Q G   QA RLF +    S   D  T   +++    +G++ E  T+F+ M 
Sbjct: 238 WNTMISGYAQGGGLSQARRLFDE----SPTRDVFTWTAMVSGYVQNGMLDEAKTFFDEMP 293

Query: 447 HDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNAL-HGVCRIHGNIDM 505
                  N+  +  +I    Q    D      E MP  + S  WN +  G  +I G+I  
Sbjct: 294 EK-----NEVSYNAMIAGYVQTKKMDIARELFESMPCRNISS-WNTMITGYGQI-GDIAQ 346

Query: 506 GRKVVDQLIDQNPQSSAT 523
            RK  D +  ++  S A 
Sbjct: 347 ARKFFDMMPQRDCVSWAA 364



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 47/173 (27%), Positives = 75/173 (43%), Gaps = 39/173 (22%)

Query: 422 LAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKM 481
           L   L    ++GL+  G  YF  M  +  + P  +H+ C+I+LL +       +++LE+ 
Sbjct: 767 LQFFLLVVIYTGLLDTGAEYFYPMNEEYSVTPTSKHYTCMIDLLGR-------VDRLEE- 818

Query: 482 PYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVE 541
                     AL G  RIHGN ++G K         PQ+S                  + 
Sbjct: 819 ---------GALLGASRIHGNTELGEKAAQMFFKMGPQNSG-----------------IS 852

Query: 542 KVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQM 594
           K+R +      +K    SW E++NK+H FSV   L   R+ +   LE+L  +M
Sbjct: 853 KMRDV----GVQKVPGYSWFEVQNKIHTFSVGLFLSRERENI-GFLEELDLKM 900


>gi|356495448|ref|XP_003516589.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Glycine max]
          Length = 667

 Score =  348 bits (894), Expect = 4e-93,   Method: Compositional matrix adjust.
 Identities = 189/584 (32%), Positives = 318/584 (54%), Gaps = 45/584 (7%)

Query: 46  RGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDV 105
            G+     TL  +L  C +   L+     + HL   Q   P  F+ NHLI  Y      +
Sbjct: 65  HGLAAQVVTLGKLLSLCVQEGDLR-----YAHLLFDQIPQPNKFMYNHLIRGYSNSNDPM 119

Query: 106 DARKVFDKI----PVKNLFSY-----------------------------------NNML 126
            +  +F ++    P+ N F++                                   N +L
Sbjct: 120 KSLLLFRQMVSAGPMPNQFTFPFVLKACAAKPFYWEAVIVHAQAIKLGMGPHACVQNAIL 179

Query: 127 SGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEF 186
           + Y    ++  AR +FD++++R +VSWN+MI GY+K G  +E +  ++ + +  +  + F
Sbjct: 180 TAYVACRLILSARQVFDDISDRTIVSWNSMIAGYSKMGFCDEAILLFQEMLQLGVEADVF 239

Query: 187 SFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDET 246
           +   +L+   K   L L R VH  +++TG   + +++++++D YAKCG L  A+ +FD+ 
Sbjct: 240 TLVSLLSASSKHCNLDLGRFVHLYIVITGVEIDSIVTNALIDMYAKCGHLQFAKHVFDQM 299

Query: 247 DARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFT 306
             +DV++WT+MV+ YA  G +E+A ++FN MP KN VSW ++I    + G   +A+ELF 
Sbjct: 300 LDKDVVSWTSMVNAYANQGLVENAVQIFNHMPVKNVVSWNSIICCLVQEGQYTEAVELFH 359

Query: 307 RMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCG 366
           RM I  + P+  T  S L  C++   L  GKQ H ++       +  + +SLIDMY+KCG
Sbjct: 360 RMCISGVMPDDATLVSILSCCSNTGDLALGKQAHCYICDNIITVSVTLCNSLIDMYAKCG 419

Query: 367 CLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVIL 426
            L     +F     ++N + WN +I AL  HG+ E+AI +F  M  S + PD+IT   +L
Sbjct: 420 ALQTAIDIF-FGMPEKNVVSWNVIIGALALHGFGEEAIEMFKSMQASGLYPDEITFTGLL 478

Query: 427 NACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHD 486
           +AC+HSGLV  G  YF+ M     I P  EH+AC+++LL + G   + M  ++KMP + D
Sbjct: 479 SACSHSGLVDMGRYYFDIMISTFRISPGVEHYACMVDLLGRGGFLGEAMTLIQKMPVKPD 538

Query: 487 SYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQL 546
             +W AL G CRI+GN+++ ++++ QL++    +S  + LLS++YS   +   ++K+R++
Sbjct: 539 VVVWGALLGACRIYGNLEIAKQIMKQLLELGRFNSGLYVLLSNMYSESQRWDDMKKIRKI 598

Query: 547 INERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQL 590
           +++   KK +AIS+IEI+   + F V D  H     +YS+L+QL
Sbjct: 599 MDDSGIKKCRAISFIEIDGCCYQFMVDDKRHCASTGIYSILDQL 642



 Score =  140 bits (354), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 114/454 (25%), Positives = 199/454 (43%), Gaps = 70/454 (15%)

Query: 82  QRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNL----FSYNNMLSGYANLGMMKH 137
           Q K+PT    +HL+    +C S    + V  +I +  L     +   +LS     G +++
Sbjct: 33  QLKSPTHQTLHHLLD---QCSSMKRLKLVHAQIILHGLAAQVVTLGKLLSLCVQEGDLRY 89

Query: 138 ARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVK 197
           A  LFD + + +   +N +I GY+ S    + L  ++ +       N+F+F  +L  C  
Sbjct: 90  AHLLFDQIPQPNKFMYNHLIRGYSNSNDPMKSLLLFRQMVSAGPMPNQFTFPFVLKACAA 149

Query: 198 LEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTM 257
                    VH Q +  G   +  + ++I+ AY  C  +  AR++FD+   R +++W +M
Sbjct: 150 KPFYWEAVIVHAQAIKLGMGPHACVQNAILTAYVACRLILSARQVFDDISDRTIVSWNSM 209

Query: 258 VSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQ 317
           ++GY+K+G  + A  LF EM +                               L +  + 
Sbjct: 210 IAGYSKMGFCDEAILLFQEMLQ-------------------------------LGVEADV 238

Query: 318 HTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFD- 376
            T  S L A +   +L  G+ VH +++ T    ++IV ++LIDMY+KCG L   + VFD 
Sbjct: 239 FTLVSLLSASSKHCNLDLGRFVHLYIVITGVEIDSIVTNALIDMYAKCGHLQFAKHVFDQ 298

Query: 377 --------------------LTDNK---------ENSMLWNTMISALTQHGYDEQAIRLF 407
                               L +N          +N + WN++I  L Q G   +A+ LF
Sbjct: 299 MLDKDVVSWTSMVNAYANQGLVENAVQIFNHMPVKNVVSWNSIICCLVQEGQYTEAVELF 358

Query: 408 HDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQ 467
           H M  S V PD  TL  IL+ C+++G +  G      +  ++  +     ++ LI++ A+
Sbjct: 359 HRMCISGVMPDDATLVSILSCCSNTGDLALGKQAHCYICDNIITVSVTLCNS-LIDMYAK 417

Query: 468 AGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHG 501
            G     ++    MP E +   WN + G   +HG
Sbjct: 418 CGALQTAIDIFFGMP-EKNVVSWNVIIGALALHG 450



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 94/384 (24%), Positives = 184/384 (47%), Gaps = 35/384 (9%)

Query: 31  GQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFL 90
           G   EAI     + Q G+     TL  +L   ++  +L LG+ VHL++ +T  +   + +
Sbjct: 217 GFCDEAILLFQEMLQLGVEADVFTLVSLLSASSKHCNLDLGRFVHLYIVITGVEI-DSIV 275

Query: 91  SNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDV 150
           +N LI MY KCG    A+ VFD++  K++ S+ +M++ YAN G++++A  +F++M  ++V
Sbjct: 276 TNALIDMYAKCGHLQFAKHVFDQMLDKDVVSWTSMVNAYANQGLVENAVQIFNHMPVKNV 335

Query: 151 VSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQ 210
           VSWN++I    + G   E ++ +  +    +  ++ +   IL+ C    +L L +Q H  
Sbjct: 336 VSWNSIICCLVQEGQYTEAVELFHRMCISGVMPDDATLVSILSCCSNTGDLALGKQAHCY 395

Query: 211 VLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESA 270
           +       +V + +S++D YAKCG L  A  +F     ++V++W  ++   A        
Sbjct: 396 ICDNIITVSVTLCNSLIDMYAKCGALQTAIDIFFGMPEKNVVSWNVIIGALA-------- 447

Query: 271 SKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASI 330
                                   +G G++A+E+F  M    + P++ TF+  L AC+  
Sbjct: 448 -----------------------LHGFGEEAIEMFKSMQASGLYPDEITFTGLLSACSHS 484

Query: 331 VSLKHGKQVHGFLIRTNFRSNTIV--MSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWN 388
             +  G+     +I T FR +  V   + ++D+  + G L +   +      K + ++W 
Sbjct: 485 GLVDMGRYYFDIMIST-FRISPGVEHYACMVDLLGRGGFLGEAMTLIQKMPVKPDVVVWG 543

Query: 389 TMISALTQHGYDEQAIRLFHDMVR 412
            ++ A   +G  E A ++   ++ 
Sbjct: 544 ALLGACRIYGNLEIAKQIMKQLLE 567



 Score = 72.4 bits (176), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 63/256 (24%), Positives = 111/256 (43%), Gaps = 36/256 (14%)

Query: 27  LISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTP 86
           L+ +GQ +EA+     +   G+     TL  IL  C+ +  L LGK+ H ++      T 
Sbjct: 345 LVQEGQYTEAVELFHRMCISGVMPDDATLVSILSCCSNTGDLALGKQAHCYI-CDNIITV 403

Query: 87  TTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMA 146
           +  L N LI MY KCG+   A  +F  +P KN+ S+N                       
Sbjct: 404 SVTLCNSLIDMYAKCGALQTAIDIFFGMPEKNVVSWN----------------------- 440

Query: 147 ERDVVSWNTMIIG-YAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTR 205
                    +IIG  A  G  EE ++ +K ++   +  +E +F G+L+ C     + + R
Sbjct: 441 ---------VIIGALALHGFGEEAIEMFKSMQASGLYPDEITFTGLLSACSHSGLVDMGR 491

Query: 206 QVHGQVLVTGFLS-NVVISSSIVDAYAKCGELSDARRLFDETDAR-DVLTWTTMVSGYAK 263
                ++ T  +S  V   + +VD   + G L +A  L  +   + DV+ W  ++     
Sbjct: 492 YYFDIMISTFRISPGVEHYACMVDLLGRGGFLGEAMTLIQKMPVKPDVVVWGALLGACRI 551

Query: 264 LGDMESASKLFNEMPE 279
            G++E A ++  ++ E
Sbjct: 552 YGNLEIAKQIMKQLLE 567


>gi|92870988|gb|ABE80149.1| Tetratricopeptide-like helical [Medicago truncatula]
          Length = 766

 Score =  348 bits (893), Expect = 5e-93,   Method: Compositional matrix adjust.
 Identities = 167/493 (33%), Positives = 280/493 (56%), Gaps = 40/493 (8%)

Query: 106 DARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGA 165
           DAR +FDK+PV++  S+N M+SGYA  G +  AR LFD    RDV +W  M+ GY ++G 
Sbjct: 222 DARWLFDKMPVRDAISWNTMISGYAQGGGLSQARRLFDESPTRDVFTWTAMVSGYVQNGM 281

Query: 166 VEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSS 225
           ++E   F+                         +E+    +V    ++ G          
Sbjct: 282 LDEAKTFF-------------------------DEMPEKNEVSYNAMIAG---------- 306

Query: 226 IVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSW 285
               Y +  ++  AR LF+    R++ +W TM++GY ++GD+  A K F+ MP+++ VSW
Sbjct: 307 ----YVQTKKMDIARELFESMPCRNISSWNTMITGYGQIGDIAQARKFFDMMPQRDCVSW 362

Query: 286 TTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIR 345
             +IAGY ++G  ++AL +F  +       N+ TF   L  CA I +L+ GKQ+HG  ++
Sbjct: 363 AAIIAGYAQSGHYEEALNMFVEIKQDGESLNRATFGCALSTCADIAALELGKQIHGQAVK 422

Query: 346 TNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIR 405
             + +   V ++L+ MY KCG +++    F+  + K+  + WNTM++   +HG+  QA+ 
Sbjct: 423 MGYGTGCFVGNALLAMYFKCGSIDEANDTFEGIEEKD-VVSWNTMLAGYARHGFGRQALT 481

Query: 406 LFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELL 465
           +F  M  + VKPD+IT+  +L+AC+H+GL+  G  YF SMT D G+IP  +H+ C+I+LL
Sbjct: 482 VFESMKTAGVKPDEITMVGVLSACSHTGLLDRGTEYFYSMTKDYGVIPTSKHYTCMIDLL 541

Query: 466 AQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHG 525
            +AG  ++  + +  MP++  +  W AL G  RIHGN ++G K  + +    PQ+S  + 
Sbjct: 542 GRAGRLEEAQDLIRNMPFQPGAASWGALLGASRIHGNTELGEKAAEMVFKMEPQNSGMYV 601

Query: 526 LLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYS 585
           LLS++Y+A G+    +K+R  + +   +K    SW+E++NK+H FSV D  HP ++ +Y+
Sbjct: 602 LLSNLYAASGRWVDADKMRSKMRDIGVQKVPGYSWVEVQNKIHTFSVGDCSHPEKERIYA 661

Query: 586 VLEQLAGQMGEDA 598
            LE+L  +M E+ 
Sbjct: 662 YLEELDLKMREEG 674



 Score =  163 bits (412), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 112/379 (29%), Positives = 180/379 (47%), Gaps = 65/379 (17%)

Query: 83  RKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLF 142
           R++  ++  N +IS Y +      AR +FD++P ++LFS+N ML+GY     +  AR LF
Sbjct: 77  RRSSVSY--NAMISGYLRNSKFNLARNLFDQMPERDLFSWNVMLTGYVRNCRLGDARRLF 134

Query: 143 DNMAERDVVSWNTMIIGYAKSGAVEEGLK-FYKVLRRFSISCNEFSFA-----GILTICV 196
           D M E+DVVSWN+++ GYA++G V+E  + F  +  + SIS N    A      I   C+
Sbjct: 135 DLMPEKDVVSWNSLLSGYAQNGYVDEAREVFDNMPEKNSISWNGLLAAYVHNGRIEEACL 194

Query: 197 KLEELKLTRQVHGQVLVTGF-----------------LSNVVISSSIVDAYAKCGELSDA 239
             E       +    L+ GF                 + + +  ++++  YA+ G LS A
Sbjct: 195 LFESKSDWDLISWNCLMGGFVRKKKLGDARWLFDKMPVRDAISWNTMISGYAQGGGLSQA 254

Query: 240 RRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQ 299
           RRLFDE+  RDV TWT MVSGY + G ++ A   F+EMPEKN VS+  +IAGY +     
Sbjct: 255 RRLFDESPTRDVFTWTAMVSGYVQNGMLDEAKTFFDEMPEKNEVSYNAMIAGYVQTKKMD 314

Query: 300 KALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLI 359
            A ELF  M                  C +I S                       +++I
Sbjct: 315 IARELFESM-----------------PCRNISSW----------------------NTMI 335

Query: 360 DMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDK 419
             Y + G +   R+ FD+   ++  + W  +I+   Q G+ E+A+ +F ++ +     ++
Sbjct: 336 TGYGQIGDIAQARKFFDMMPQRD-CVSWAAIIAGYAQSGHYEEALNMFVEIKQDGESLNR 394

Query: 420 ITLAVILNACTHSGLVQEG 438
            T    L+ C     ++ G
Sbjct: 395 ATFGCALSTCADIAALELG 413



 Score =  139 bits (350), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 100/416 (24%), Positives = 177/416 (42%), Gaps = 75/416 (18%)

Query: 18  NCLIQSFLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLH 77
           NCL+  F   + K +L +A    D +  R     A +   ++   A+   L   +R+   
Sbjct: 208 NCLMGGF---VRKKKLGDARWLFDKMPVR----DAISWNTMISGYAQGGGLSQARRL--- 257

Query: 78  LKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKH 137
               +  T   F    ++S Y + G   +A+  FD++P KN  SYN M++GY     M  
Sbjct: 258 --FDESPTRDVFTWTAMVSGYVQNGMLDEAKTFFDEMPEKNEVSYNAMIAGYVQTKKMDI 315

Query: 138 ARNLFDNMAERDVVSWNTMII-------------------------------GYAKSGAV 166
           AR LF++M  R++ SWNTMI                                GYA+SG  
Sbjct: 316 ARELFESMPCRNISSWNTMITGYGQIGDIAQARKFFDMMPQRDCVSWAAIIAGYAQSGHY 375

Query: 167 EEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSI 226
           EE L  +  +++   S N  +F   L+ C  +  L+L +Q+HGQ +  G+ +   + +++
Sbjct: 376 EEALNMFVEIKQDGESLNRATFGCALSTCADIAALELGKQIHGQAVKMGYGTGCFVGNAL 435

Query: 227 VDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWT 286
           +  Y KCG + +A   F+  + +DV++W TM++GYA                        
Sbjct: 436 LAMYFKCGSIDEANDTFEGIEEKDVVSWNTMLAGYA------------------------ 471

Query: 287 TLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRT 346
                  R+G G++AL +F  M    ++P++ T    L AC+    L  G +    + + 
Sbjct: 472 -------RHGFGRQALTVFESMKTAGVKPDEITMVGVLSACSHTGLLDRGTEYFYSMTKD 524

Query: 347 -NFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDE 401
                 +   + +ID+  + G L + + +      +  +  W  ++ A   HG  E
Sbjct: 525 YGVIPTSKHYTCMIDLLGRAGRLEEAQDLIRNMPFQPGAASWGALLGASRIHGNTE 580



 Score =  111 bits (278), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 99/378 (26%), Positives = 166/378 (43%), Gaps = 64/378 (16%)

Query: 149 DVVSWNTMIIGYAKSGAVEEGLKFYKVL-RRFSISCNEFSFAGILTICVKLEELKLTRQV 207
           D++ WN  I  + ++G  +  L  +  + RR S+S N      +++  ++  +  L R +
Sbjct: 48  DILKWNKAISTHMRNGHCDSALHVFNTMPRRSSVSYN-----AMISGYLRNSKFNLARNL 102

Query: 208 HGQVLVTGFLS-NVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGD 266
             Q+      S NV+++      Y +   L DARRLFD    +DV++W +++SGYA+ G 
Sbjct: 103 FDQMPERDLFSWNVMLT-----GYVRNCRLGDARRLFDLMPEKDVVSWNSLLSGYAQNGY 157

Query: 267 MESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCA 326
           ++ A ++F+ MPEKN +SW  L+A Y  NG  ++A                     CL  
Sbjct: 158 VDEAREVFDNMPEKNSISWNGLLAAYVHNGRIEEA---------------------CL-- 194

Query: 327 CASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSML 386
                           L  +    + I  + L+  + +   L D R +FD    ++ ++ 
Sbjct: 195 ----------------LFESKSDWDLISWNCLMGGFVRKKKLGDARWLFDKMPVRD-AIS 237

Query: 387 WNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMT 446
           WNTMIS   Q G   QA RLF +    S   D  T   +++    +G++ E  T+F+ M 
Sbjct: 238 WNTMISGYAQGGGLSQARRLFDE----SPTRDVFTWTAMVSGYVQNGMLDEAKTFFDEMP 293

Query: 447 HDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNAL-HGVCRIHGNIDM 505
                  N+  +  +I    Q    D      E MP  + S  WN +  G  +I G+I  
Sbjct: 294 E-----KNEVSYNAMIAGYVQTKKMDIARELFESMPCRNISS-WNTMITGYGQI-GDIAQ 346

Query: 506 GRKVVDQLIDQNPQSSAT 523
            RK  D +  ++  S A 
Sbjct: 347 ARKFFDMMPQRDCVSWAA 364


>gi|147838932|emb|CAN63659.1| hypothetical protein VITISV_008415 [Vitis vinifera]
          Length = 760

 Score =  348 bits (893), Expect = 5e-93,   Method: Compositional matrix adjust.
 Identities = 187/571 (32%), Positives = 311/571 (54%), Gaps = 10/571 (1%)

Query: 32  QLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLS 91
           Q   A+S+   +  RG+      L   ++ CA   +LK  ++VH    ++   +  +F+ 
Sbjct: 94  QFHHALSTFSQMLTRGLMPDNRVLPSAVKACAGLSALKPARQVHGIASVSGFDS-DSFVQ 152

Query: 92  NHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDV- 150
           + L+ MY KC    DA +VFD++   ++ S++ +++ YA  G +  A+ LF  M +  V 
Sbjct: 153 SSLVHMYIKCNQIRDAHRVFDRMFEPDVVSWSALVAAYARQGCVDEAKRLFSEMGDSGVQ 212

Query: 151 ---VSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQV 207
              +SWN MI G+  SG   E +  +  +       +  + + +L     LE+L +   +
Sbjct: 213 PNLISWNGMIAGFNHSGLYSEAVLMFLDMHLRGFEPDGTTISSVLPAVGDLEDLVMGILI 272

Query: 208 HGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDM 267
           HG V+  G +S+  +SS+++D Y KC   S+  ++FD+ D  DV +    + G ++ G +
Sbjct: 273 HGYVIKQGLVSDKCVSSALIDMYGKCSCTSEMSQVFDQMDHMDVGSCNAFIFGLSRNGQV 332

Query: 268 ESASKLFNEMPEK----NPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSC 323
           ES+ +LF ++ ++    N VSWT++IA  ++NG   +ALELF  M I  ++PN  T    
Sbjct: 333 ESSLRLFRQLKDQGMELNVVSWTSMIACCSQNGRDMEALELFREMQIAGVKPNSVTIPCL 392

Query: 324 LCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKEN 383
           L AC +I +L HGK  H F +R    ++  V S+LIDMY+KCG +   R  FD    K N
Sbjct: 393 LPACGNIAALMHGKAAHCFSLRRGISTDVYVGSALIDMYAKCGRIQASRICFDGIPTK-N 451

Query: 384 SMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFE 443
            + WN +I+    HG  ++A+ +F  M RS  KPD I+   +L+AC+ SGL +EG  YF 
Sbjct: 452 LVCWNAVIAGYAMHGKAKEAMEIFDLMQRSGQKPDIISFTCVLSACSQSGLTEEGSYYFN 511

Query: 444 SMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNI 503
           SM+   GI    EH+AC++ LL++AG  +Q    + +MP   D+ +W AL   CR+H N+
Sbjct: 512 SMSSKYGIEARVEHYACMVTLLSRAGKLEQAYAMIRRMPVNPDACVWGALLSSCRVHNNV 571

Query: 504 DMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEI 563
            +G    ++L +  P +   + LLS+IY++ G    V +VR ++  +  +K    SWIE+
Sbjct: 572 SLGEVAAEKLFELEPSNPGNYILLSNIYASKGMWNEVNRVRDMMKNKGLRKNPGCSWIEV 631

Query: 564 ENKVHAFSVSDSLHPMRDVLYSVLEQLAGQM 594
           +NKVH     D  HP    +   L++L+ +M
Sbjct: 632 KNKVHMLLAGDKSHPQMTQIIENLDKLSMEM 662



 Score =  187 bits (476), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 134/494 (27%), Positives = 221/494 (44%), Gaps = 74/494 (14%)

Query: 65  SKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNN 124
           + SL   ++ H H+ L       T L+  L+S Y       DA  V D +P  N+FS++ 
Sbjct: 26  TASLSQTRQAHAHI-LKTGLFNDTHLATKLLSHYANNMCFADATLVLDLVPEPNVFSFST 84

Query: 125 MLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCN 184
           ++  ++      HA + F  M  R ++  N ++    K+                     
Sbjct: 85  LIYAFSKFHQFHHALSTFSQMLTRGLMPDNRVLPSAVKA--------------------- 123

Query: 185 EFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFD 244
                     C  L  LK  RQVHG   V+GF S+  + SS+V  Y KC ++ DA R+FD
Sbjct: 124 ----------CAGLSALKPARQVHGIASVSGFDSDSFVQSSLVHMYIKCNQIRDAHRVFD 173

Query: 245 ETDARDVLTWTTMVSGYAKLGDMESASKLFNEMP----EKNPVSWTTLIAGYTRNGLGQK 300
                DV++W+ +V+ YA+ G ++ A +LF+EM     + N +SW  +IAG+  +GL  +
Sbjct: 174 RMFEPDVVSWSALVAAYARQGCVDEAKRLFSEMGDSGVQPNLISWNGMIAGFNHSGLYSE 233

Query: 301 ALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLID 360
           A+ +F  M +    P+  T SS L A   +  L  G  +HG++I+    S+  V S+LID
Sbjct: 234 AVLMFLDMHLRGFEPDGTTISSVLPAVGDLEDLVMGILIHGYVIKQGLVSDKCVSSALID 293

Query: 361 MYSKCGCLNDGRQVFDLTDNKE----------------------------------NSML 386
           MY KC C ++  QVFD  D+ +                                  N + 
Sbjct: 294 MYGKCSCTSEMSQVFDQMDHMDVGSCNAFIFGLSRNGQVESSLRLFRQLKDQGMELNVVS 353

Query: 387 WNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMT 446
           W +MI+  +Q+G D +A+ LF +M  + VKP+ +T+  +L AC +   +  G       +
Sbjct: 354 WTSMIACCSQNGRDMEALELFREMQIAGVKPNSVTIPCLLPACGNIAALMHGKAA-HCFS 412

Query: 447 HDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMG 506
              GI  +    + LI++ A+ G         + +P + +   WNA+     +HG     
Sbjct: 413 LRRGISTDVYVGSALIDMYAKCGRIQASRICFDGIPTK-NLVCWNAVIAGYAMHGKAKEA 471

Query: 507 RKVVD--QLIDQNP 518
            ++ D  Q   Q P
Sbjct: 472 MEIFDLMQRSGQKP 485


>gi|242040141|ref|XP_002467465.1| hypothetical protein SORBIDRAFT_01g028590 [Sorghum bicolor]
 gi|241921319|gb|EER94463.1| hypothetical protein SORBIDRAFT_01g028590 [Sorghum bicolor]
          Length = 529

 Score =  348 bits (892), Expect = 6e-93,   Method: Compositional matrix adjust.
 Identities = 189/504 (37%), Positives = 299/504 (59%), Gaps = 10/504 (1%)

Query: 20  LIQSFLSLISKGQLSEAISSLDLLAQRGIRLP----AETLAFILQQCAESKSLKLGKRVH 75
           L+ +  S IS G    A+S L  LA+ G+R P          +L + A      L  R+ 
Sbjct: 19  LLAALHSCISGGNAPAAVSLLPTLARAGLRAPFPLLTSLAGLLLLRPAAPSFPSLAGRLL 78

Query: 76  LHLKLT--QRKTP-TTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANL 132
           L+++L   +R  P +T L++ L+S+ F  G   DAR++F K+P  ++ SYN ML+GYA L
Sbjct: 79  LYVRLAGLKRLVPCSTQLADRLLSLNFLLGRPRDARRLFTKMPRPSVHSYNAMLTGYARL 138

Query: 133 GMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRF--SISCNEFSFAG 190
            +   A  +F +M  R++VS+N +++   + G     ++ Y  LR    S+  +  +F  
Sbjct: 139 ALAGPASEVFASMPHRELVSYNAVMLALGRGGEARGAVELYSELRNMYPSLGYSHHTFLA 198

Query: 191 ILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARD 250
           +L    +L + +L RQ HG ++V GFLS+V I+SS++D Y KC  + DAR LFDE   +D
Sbjct: 199 LLAAGAELMDRELARQFHGHLMVLGFLSDVNIASSLLDVYRKCHCVDDARNLFDEMHIKD 258

Query: 251 VLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMI 310
           V  WTT+V   A+ G +  A +LF++MPE+N  SW  LI GY  +G    AL +F  +M 
Sbjct: 259 VHMWTTVVCACAEDGQLTIARQLFDQMPERNAFSWNALIEGYVCHGQPMDALSMFQHLME 318

Query: 311 LRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLND 370
             ++P+Q T   CL ACA++ SLK G+Q+HG L+R  F  + +++SS+IDMYS+C  L+ 
Sbjct: 319 EGLQPDQITLGCCLSACAAMRSLKLGQQIHGMLLRCGFDQSVMIISSIIDMYSECSFLSG 378

Query: 371 GRQVFDLTD-NKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNAC 429
             +VF LT   ++N++LWN M+SAL +HG+ + AI LF  M+    KPD  T  ++L AC
Sbjct: 379 AIEVFSLTGRERKNAVLWNGMLSALCRHGHGQDAIGLFVQMIHERQKPDANTFFLVLTAC 438

Query: 430 THSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYL 489
            H GLV+EG+ +F  M     I+P QEH+ C+++L++ A  +D+++  ++  P+  ++  
Sbjct: 439 CHCGLVEEGMNFFVLMNERYRIVPGQEHYFCMVDLVSHASSNDKVIEWIKSSPFSFNARA 498

Query: 490 WNALHGVCRIHGNIDMGRKVVDQL 513
           W  L   C IH +I++  KV +QL
Sbjct: 499 WEVLVRNCTIHESIELLNKVEEQL 522


>gi|224124578|ref|XP_002330058.1| predicted protein [Populus trichocarpa]
 gi|222871483|gb|EEF08614.1| predicted protein [Populus trichocarpa]
          Length = 568

 Score =  348 bits (892), Expect = 6e-93,   Method: Compositional matrix adjust.
 Identities = 186/501 (37%), Positives = 288/501 (57%), Gaps = 30/501 (5%)

Query: 98  YFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMI 157
           YF+     +ARK+FDK+P  N  S+N ++SGY   GM+  AR +FD M ER+VVSW  MI
Sbjct: 4   YFQNKRPREARKLFDKMPETNTISWNGLVSGYVQNGMISEARKVFDKMPERNVVSWTAMI 63

Query: 158 IGYAKSGAVEEG-LKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGF 216
            GY + G +EE  L F+++  R     N  S+  +L   ++   +   RQ+   + V   
Sbjct: 64  RGYVQEGLIEEAELLFWRMPER-----NVVSWTVMLGGLIEDGRVDEARQLFDMMPV--- 115

Query: 217 LSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNE 276
             +VV S++++D     G L +AR +FDE   R+V+ WT+M+SG                
Sbjct: 116 -KDVVASTNMIDGLCSEGRLIEAREIFDEMPQRNVVAWTSMISG---------------- 158

Query: 277 MPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHG 336
             EK+  +W+T+I  Y R G   +AL LF+ M    +RP+  +  S L  C S+ SL HG
Sbjct: 159 --EKDDGTWSTMIKIYERKGFELEALALFSLMQREGVRPSFPSVISVLSVCGSLASLDHG 216

Query: 337 KQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQ 396
           +QVH  L+R+ F  +  V S LI MY KCG L   ++VFD   +K+  M WN++I+   Q
Sbjct: 217 RQVHSQLVRSQFDIDIYVSSVLITMYIKCGDLVTAKRVFDRFSSKDIVM-WNSIIAGYAQ 275

Query: 397 HGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQE 456
           HG+ E+A+ +FHDM  SS+ PD+IT   +L+AC+++G V+EGL  FESM     + P  E
Sbjct: 276 HGFGEKALEVFHDMFSSSIAPDEITFIGVLSACSYTGKVKEGLEIFESMKSKYQVDPKTE 335

Query: 457 HHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQ 516
           H+AC+++LL +AG  ++ MN +E MP E D+ +W AL G CR H N+D+      +L+  
Sbjct: 336 HYACMVDLLGRAGKLNEAMNLIENMPVEADAIVWGALLGACRTHKNLDLAEIAAKKLLQL 395

Query: 517 NPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSL 576
            P ++  + LLS++YS+  + + V ++R+ +  +  +K    SWIE++ KVH FS   S 
Sbjct: 396 EPNNAGPYILLSNLYSSQSRWKDVVELRKTMRAKNLRKSPGCSWIEVDKKVHIFSGGGST 455

Query: 577 -HPMRDVLYSVLEQLAGQMGE 596
            HP  +++   L +L   + E
Sbjct: 456 SHPEHEMILKKLGKLGALLRE 476



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 45/152 (29%), Positives = 82/152 (53%), Gaps = 5/152 (3%)

Query: 30  KGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTF 89
           KG   EA++   L+ + G+R    ++  +L  C    SL  G++VH  L  +Q      +
Sbjct: 175 KGFELEALALFSLMQREGVRPSFPSVISVLSVCGSLASLDHGRQVHSQLVRSQFDI-DIY 233

Query: 90  LSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERD 149
           +S+ LI+MY KCG  V A++VFD+   K++  +N++++GYA  G  + A  +F +M    
Sbjct: 234 VSSVLITMYIKCGDLVTAKRVFDRFSSKDIVMWNSIIAGYAQHGFGEKALEVFHDMFSSS 293

Query: 150 VVSWNTMIIGY----AKSGAVEEGLKFYKVLR 177
           +       IG     + +G V+EGL+ ++ ++
Sbjct: 294 IAPDEITFIGVLSACSYTGKVKEGLEIFESMK 325


>gi|225459736|ref|XP_002284744.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20230
           [Vitis vinifera]
          Length = 758

 Score =  347 bits (890), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 187/571 (32%), Positives = 311/571 (54%), Gaps = 10/571 (1%)

Query: 32  QLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLS 91
           Q   A+S+   +  RG+      L   ++ CA   +LK  ++VH    ++   +  +F+ 
Sbjct: 94  QFHHALSTFSQMLTRGLMPDNRVLPSAVKACAGLSALKPARQVHGIASVSGFDS-DSFVQ 152

Query: 92  NHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDV- 150
           + L+ MY KC    DA +VFD++   ++ S++ +++ YA  G +  A+ LF  M +  V 
Sbjct: 153 SSLVHMYIKCNQIRDAHRVFDRMFEPDVVSWSALVAAYARQGCVDEAKRLFSEMGDSGVQ 212

Query: 151 ---VSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQV 207
              +SWN MI G+  SG   E +  +  +       +  + + +L     LE+L +   +
Sbjct: 213 PNLISWNGMIAGFNHSGLYSEAVLMFLDMHLRGFEPDGTTISSVLPAVGDLEDLVMGILI 272

Query: 208 HGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDM 267
           HG V+  G +S+  +SS+++D Y KC   S+  ++FD+ D  DV +    + G ++ G +
Sbjct: 273 HGYVIKQGLVSDKCVSSALIDMYGKCSCTSEMSQVFDQMDHMDVGSCNAFIFGLSRNGQV 332

Query: 268 ESASKLFNEMPEK----NPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSC 323
           ES+ +LF ++ ++    N VSWT++IA  ++NG   +ALELF  M I  ++PN  T    
Sbjct: 333 ESSLRLFRQLKDQGMELNVVSWTSMIACCSQNGRDIEALELFREMQIAGVKPNSVTIPCL 392

Query: 324 LCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKEN 383
           L AC +I +L HGK  H F +R    ++  V S+LIDMY+KCG +   R  FD    K N
Sbjct: 393 LPACGNIAALMHGKAAHCFSLRRGISTDVYVGSALIDMYAKCGRIQASRICFDGIPTK-N 451

Query: 384 SMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFE 443
            + WN +I+    HG  ++A+ +F  M RS  KPD I+   +L+AC+ SGL +EG  YF 
Sbjct: 452 LVCWNAVIAGYAMHGKAKEAMEIFDLMQRSGQKPDIISFTCVLSACSQSGLTEEGSYYFN 511

Query: 444 SMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNI 503
           SM+   GI    EH+AC++ LL++AG  +Q    + +MP   D+ +W AL   CR+H N+
Sbjct: 512 SMSSKYGIEARVEHYACMVTLLSRAGKLEQAYAMIRRMPVNPDACVWGALLSSCRVHNNV 571

Query: 504 DMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEI 563
            +G    ++L +  P +   + LLS+IY++ G    V +VR ++  +  +K    SWIE+
Sbjct: 572 SLGEVAAEKLFELEPSNPGNYILLSNIYASKGMWNEVNRVRDMMKNKGLRKNPGCSWIEV 631

Query: 564 ENKVHAFSVSDSLHPMRDVLYSVLEQLAGQM 594
           +NKVH     D  HP    +   L++L+ +M
Sbjct: 632 KNKVHMLLAGDKSHPQMTQIIEKLDKLSMEM 662



 Score =  187 bits (474), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 134/496 (27%), Positives = 222/496 (44%), Gaps = 74/496 (14%)

Query: 63  AESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSY 122
           + + SL   ++ H H+ L       T L+  L+S Y       DA  V D +P  N+FS+
Sbjct: 24  STTASLSQTRQAHAHI-LKTGLFNDTHLATKLLSHYANNMCFADATLVLDLVPEPNVFSF 82

Query: 123 NNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSIS 182
           + ++  ++      HA + F  M  R ++  N ++    K+                   
Sbjct: 83  STLIYAFSKFHQFHHALSTFSQMLTRGLMPDNRVLPSAVKA------------------- 123

Query: 183 CNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRL 242
                       C  L  LK  RQVHG   V+GF S+  + SS+V  Y KC ++ DA R+
Sbjct: 124 ------------CAGLSALKPARQVHGIASVSGFDSDSFVQSSLVHMYIKCNQIRDAHRV 171

Query: 243 FDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMP----EKNPVSWTTLIAGYTRNGLG 298
           FD     DV++W+ +V+ YA+ G ++ A +LF+EM     + N +SW  +IAG+  +GL 
Sbjct: 172 FDRMFEPDVVSWSALVAAYARQGCVDEAKRLFSEMGDSGVQPNLISWNGMIAGFNHSGLY 231

Query: 299 QKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSL 358
            +A+ +F  M +    P+  T SS L A   +  L  G  +HG++I+    S+  V S+L
Sbjct: 232 SEAVLMFLDMHLRGFEPDGTTISSVLPAVGDLEDLVMGILIHGYVIKQGLVSDKCVSSAL 291

Query: 359 IDMYSKCGCLNDGRQVFDLTDNKE----------------------------------NS 384
           IDMY KC C ++  QVFD  D+ +                                  N 
Sbjct: 292 IDMYGKCSCTSEMSQVFDQMDHMDVGSCNAFIFGLSRNGQVESSLRLFRQLKDQGMELNV 351

Query: 385 MLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFES 444
           + W +MI+  +Q+G D +A+ LF +M  + VKP+ +T+  +L AC +   +  G      
Sbjct: 352 VSWTSMIACCSQNGRDIEALELFREMQIAGVKPNSVTIPCLLPACGNIAALMHGKAA-HC 410

Query: 445 MTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNID 504
            +   GI  +    + LI++ A+ G         + +P + +   WNA+     +HG   
Sbjct: 411 FSLRRGISTDVYVGSALIDMYAKCGRIQASRICFDGIPTK-NLVCWNAVIAGYAMHGKAK 469

Query: 505 MGRKVVD--QLIDQNP 518
              ++ D  Q   Q P
Sbjct: 470 EAMEIFDLMQRSGQKP 485


>gi|449451309|ref|XP_004143404.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g21090-like [Cucumis sativus]
 gi|449526377|ref|XP_004170190.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g21090-like [Cucumis sativus]
          Length = 577

 Score =  347 bits (890), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 184/546 (33%), Positives = 303/546 (55%), Gaps = 10/546 (1%)

Query: 56  AFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIP 115
           A +  +C + K L++G  +H HL  T   +   FL+N LI MY KC S  +A+K FD +P
Sbjct: 15  ARLFSKCIQHKHLRVGMSLHSHLIKTAL-SFDLFLANRLIDMYSKCNSMENAQKAFDDLP 73

Query: 116 VKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKV 175
           ++N+ S+N +L+ Y+  G    AR +FD M   ++VS+NT+I  +   G   E +  ++ 
Sbjct: 74  IRNIHSWNTILASYSRAGFFSQARKVFDEMPHPNIVSYNTLISSFTHHGLYVESMNIFRQ 133

Query: 176 LRR-FSI-SCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKC 233
           +++ F + + +E +   I   C  L  L+  RQVHG  +V G   N+++ ++IVDAY KC
Sbjct: 134 MQQDFDLLALDEITLVSIAGTCACLGALEFLRQVHGAAIVIGLEFNMIVCNAIVDAYGKC 193

Query: 234 GELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYT 293
           G+   +  +F     RDV+TWT+MV  Y +   ++ A ++F+ MP KN  +WT LI    
Sbjct: 194 GDPDASYSIFSRMKERDVVTWTSMVVAYNQTSRLDDAFRVFSCMPVKNVHTWTALINALV 253

Query: 294 RNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIR----TNFR 349
           +N    +AL+LF +M+  +  PN  TF   L ACA +  +  GK++HG +IR     NF 
Sbjct: 254 KNKYSNEALDLFQQMLEEKTSPNAFTFVGVLSACADLALIAKGKEIHGLIIRRSSELNF- 312

Query: 350 SNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHD 409
            N  V ++LID+YSK G +   R +F+L   K+  + WN++I+   Q+G   +A+  F  
Sbjct: 313 PNVYVCNALIDLYSKSGDVKSARMLFNLILEKD-VVSWNSLITGFAQNGLGREALLAFRK 371

Query: 410 MVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAG 469
           M    ++P+K+T   +L+AC+H+GL  EGL   E M     I P+ EH+A +I++  +  
Sbjct: 372 MTEVGIRPNKVTFLAVLSACSHTGLSSEGLCILELMEKFYDIEPSLEHYAVMIDMFGREN 431

Query: 470 CSDQLMNQLEKMPYEHDSY-LWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLS 528
              + ++ + + P       +W A+ G CRIH N+D+  +  + L +  P ++  + +LS
Sbjct: 432 RLAEALDLISRAPNGSKHVGIWGAVLGACRIHENLDLAIRAAETLFEMEPDNAGRYVMLS 491

Query: 529 SIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLE 588
           ++++A  +      VR+L+ ER FKKE A S IEI N  H F   D+ H     +Y ++ 
Sbjct: 492 NVFAAASRWMDAHNVRKLMEERGFKKEVAYSCIEIRNIRHKFVARDNSHSQMGEIYELMF 551

Query: 589 QLAGQM 594
            L   M
Sbjct: 552 ILLEHM 557



 Score = 55.5 bits (132), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 38/160 (23%), Positives = 78/160 (48%), Gaps = 6/160 (3%)

Query: 26  SLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVH--LHLKLTQR 83
           +L+     +EA+     + +      A T   +L  CA+   +  GK +H  +  + ++ 
Sbjct: 251 ALVKNKYSNEALDLFQQMLEEKTSPNAFTFVGVLSACADLALIAKGKEIHGLIIRRSSEL 310

Query: 84  KTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFD 143
             P  ++ N LI +Y K G    AR +F+ I  K++ S+N++++G+A  G+ + A   F 
Sbjct: 311 NFPNVYVCNALIDLYSKSGDVKSARMLFNLILEKDVVSWNSLITGFAQNGLGREALLAFR 370

Query: 144 NMAERDV----VSWNTMIIGYAKSGAVEEGLKFYKVLRRF 179
            M E  +    V++  ++   + +G   EGL   +++ +F
Sbjct: 371 KMTEVGIRPNKVTFLAVLSACSHTGLSSEGLCILELMEKF 410


>gi|357506719|ref|XP_003623648.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355498663|gb|AES79866.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 707

 Score =  347 bits (889), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 203/589 (34%), Positives = 308/589 (52%), Gaps = 76/589 (12%)

Query: 71  GKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYA 130
            ++V  +  L QR   +    N ++S YF+     DA  +FD++P +N  S+N M+SGY 
Sbjct: 38  ARKVFDNTPLPQRTIASW---NAMVSAYFESHKPRDALLLFDQMPQRNTVSFNGMISGYV 94

Query: 131 NLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAG 190
             GM+  AR +FD M ER+VVSW +M+ GY + G VEE  K +  + R ++        G
Sbjct: 95  KNGMVADARKVFDVMPERNVVSWTSMVRGYVQEGMVEEAEKLFWEMPRRNVVSWTVMIGG 154

Query: 191 ILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARD 250
           +L      +  KL   +  +        +VV+ ++++  Y + G L +AR LFDE   R+
Sbjct: 155 LLKESRIDDAKKLFDMIPEK--------DVVVVTNMIGGYCQVGRLDEARELFDEMKVRN 206

Query: 251 VLTWTTMVS-------------------------------GYAKLGDMESASKLFNEMP- 278
           V TWTTMVS                               GY + G M+ A +LF  MP 
Sbjct: 207 VFTWTTMVSGYAKNGRVDVARKLFEVMPERNEVSWTAMLMGYTQSGRMKEAFELFEAMPV 266

Query: 279 ------------------------------EKNPVSWTTLIAGYTRNGLGQKALELFTRM 308
                                         E++  +W  +I  + R GL  +AL LF RM
Sbjct: 267 KWIVACNEMILQFGLAGEMHRARMMFEGMKERDEGTWNAMIKVFERKGLDLEALGLFARM 326

Query: 309 MILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCL 368
               +  N  +  S L  CAS+ SL HG+QVH  L+R+ F  +  V S LI MY KCG L
Sbjct: 327 QREGVALNFPSMISVLSVCASLASLDHGRQVHARLVRSEFDQDLYVASVLITMYVKCGDL 386

Query: 369 NDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNA 428
              + +F+    K + ++WN+MI+  +QHG  E+A+ +FHDM  S V+PD++T   +L+A
Sbjct: 387 VRAKGIFNRFLFK-DVVMWNSMITGYSQHGLGEEALNVFHDMCSSGVQPDEVTFIGVLSA 445

Query: 429 CTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSY 488
           C++SG V+EG   FE+M     + P  EH+AC+++LL +AG  D+ M  +EKMP E D+ 
Sbjct: 446 CSYSGKVKEGFEIFEAMKCTYQVEPGIEHYACMVDLLGRAGRVDEAMELVEKMPMEPDAI 505

Query: 489 LWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLIN 548
           +W AL G CR H  +D+    V++L    P+++  + LLS +Y+  G+ R VE +R+ IN
Sbjct: 506 VWGALLGACRNHMKLDLAEVAVEKLAKLEPKNAGPYVLLSHMYATKGRWRDVEVLRKKIN 565

Query: 549 ERQFKKEQAISWIEIENKVHAFSVSDSL-HPMRDVLYSVLEQLAGQMGE 596
            R  K     SWIE+E KVH F+  DS  HP + ++  +LE+L+G + E
Sbjct: 566 RRVIKF-PGCSWIEVEKKVHMFTGGDSKSHPEQHMITQMLEKLSGFLRE 613



 Score = 97.1 bits (240), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 77/307 (25%), Positives = 143/307 (46%), Gaps = 58/307 (18%)

Query: 223 SSSIVDAYAKCGELSDARRLFDET------------------------DA---------R 249
           ++S +  Y + G++ +AR++FD T                        DA         R
Sbjct: 22  NTSAISRYGRIGDIHNARKVFDNTPLPQRTIASWNAMVSAYFESHKPRDALLLFDQMPQR 81

Query: 250 DVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMM 309
           + +++  M+SGY K G +  A K+F+ MPE+N VSWT+++ GY + G+ ++A +LF  M 
Sbjct: 82  NTVSFNGMISGYVKNGMVADARKVFDVMPERNVVSWTSMVRGYVQEGMVEEAEKLFWEM- 140

Query: 310 ILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLN 369
               R N  +++  +        +   K++   +       + +V++++I  Y + G L+
Sbjct: 141 ---PRRNVVSWTVMIGGLLKESRIDDAKKLFDMIP----EKDVVVVTNMIGGYCQVGRLD 193

Query: 370 DGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNAC 429
           + R++FD    + N   W TM+S   ++G  + A +LF  M       ++++   +L   
Sbjct: 194 EARELFDEMKVR-NVFTWTTMVSGYAKNGRVDVARKLFEVMPER----NEVSWTAMLMGY 248

Query: 430 THSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMN---QLEKMPYEHD 486
           T SG ++E    FE+M       P +   AC  E++ Q G + ++       E M  E D
Sbjct: 249 TQSGRMKEAFELFEAM-------PVKWIVAC-NEMILQFGLAGEMHRARMMFEGMK-ERD 299

Query: 487 SYLWNAL 493
              WNA+
Sbjct: 300 EGTWNAM 306



 Score = 72.8 bits (177), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 73/349 (20%), Positives = 146/349 (41%), Gaps = 67/349 (19%)

Query: 248 ARDVLTWTTMVSGYAKLGDMESASKLFNE--MPEKNPVSWTTLIAGYTRNGLGQKALELF 305
           AR + + T+ +S Y ++GD+ +A K+F+   +P++   SW  +++ Y  +   + AL LF
Sbjct: 16  ARSLCSNTSAISRYGRIGDIHNARKVFDNTPLPQRTIASWNAMVSAYFESHKPRDALLLF 75

Query: 306 TRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKC 365
            +M      P +                                 NT+  + +I  Y K 
Sbjct: 76  DQM------PQR---------------------------------NTVSFNGMISGYVKN 96

Query: 366 GCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVI 425
           G + D R+VFD+   + N + W +M+    Q G  E+A +LF +M R +V    ++  V+
Sbjct: 97  GMVADARKVFDVMPER-NVVSWTSMVRGYVQEGMVEEAEKLFWEMPRRNV----VSWTVM 151

Query: 426 LNACTHSGLVQEGLTYFESMTH-DLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYE 484
           +        + +    F+ +   D+ ++ N     C      Q G  D+     ++M   
Sbjct: 152 IGGLLKESRIDDAKKLFDMIPEKDVVVVTNMIGGYC------QVGRLDEARELFDEMKV- 204

Query: 485 HDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVR 544
            + + W  +      +G +D+ RK+ + + ++N + S T  L+    S    GR+ E   
Sbjct: 205 RNVFTWTTMVSGYAKNGRVDVARKLFEVMPERN-EVSWTAMLMGYTQS----GRMKEAF- 258

Query: 545 QLINERQFKKEQAISWIEIENK-VHAFSVSDSLHPMRDVLYSVLEQLAG 592
                 +  +   + WI   N+ +  F ++  +H  R +   + E+  G
Sbjct: 259 ------ELFEAMPVKWIVACNEMILQFGLAGEMHRARMMFEGMKERDEG 301



 Score = 72.4 bits (176), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 45/164 (27%), Positives = 90/164 (54%), Gaps = 8/164 (4%)

Query: 18  NCLIQSFLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLH 77
           N +I+ F     KG   EA+     + + G+ L   ++  +L  CA   SL  G++VH  
Sbjct: 304 NAMIKVFER---KGLDLEALGLFARMQREGVALNFPSMISVLSVCASLASLDHGRQVHAR 360

Query: 78  LKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKH 137
           L  ++      ++++ LI+MY KCG  V A+ +F++   K++  +N+M++GY+  G+ + 
Sbjct: 361 LVRSEFDQ-DLYVASVLITMYVKCGDLVRAKGIFNRFLFKDVVMWNSMITGYSQHGLGEE 419

Query: 138 ARNLFDNM----AERDVVSWNTMIIGYAKSGAVEEGLKFYKVLR 177
           A N+F +M     + D V++  ++   + SG V+EG + ++ ++
Sbjct: 420 ALNVFHDMCSSGVQPDEVTFIGVLSACSYSGKVKEGFEIFEAMK 463


>gi|297745590|emb|CBI40755.3| unnamed protein product [Vitis vinifera]
          Length = 789

 Score =  346 bits (887), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 175/562 (31%), Positives = 317/562 (56%), Gaps = 35/562 (6%)

Query: 23  SFLSLISK-GQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLT 81
           + +S++S+ G  +E +++   +  +G R  + T A +L  C     L+ G   HLH ++ 
Sbjct: 216 TMISILSQHGFGAETLNTFLEMWNQGFRPNSMTYASVLSACTSIYDLEWG--AHLHARIV 273

Query: 82  QRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNL 141
            R  P        + +Y  CG                      ++  YA  G ++ AR +
Sbjct: 274 -RMEPC-------LDVYAGCG----------------------LIDMYAKCGRLESARQV 303

Query: 142 FDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEEL 201
           FD + E + VSW ++I G A++G  EE L  +  +R   ++ ++F+ A +L +C+  +++
Sbjct: 304 FDGLTEHNAVSWTSLIGGVAQAGFQEEALVLFNQMREVPVASDQFTLATVLGVCLSQKDI 363

Query: 202 KLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGY 261
            +  Q+H   +  G  S+V +++++V  YAKCG++  A   F+    RD+++WT M++ +
Sbjct: 364 SIGEQLHAHTITRGLDSSVPVANALVTMYAKCGDVWKANHAFELMPIRDIISWTAMITAF 423

Query: 262 AKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFS 321
           ++ GD+E A + F++MPE+N +SW +++A Y + G  ++ L+++ +M+   ++ +  TFS
Sbjct: 424 SQAGDVEKAREYFDKMPERNVISWNSMLATYMQRGYWEEGLKVYIQMLREGVKTDWITFS 483

Query: 322 SCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNK 381
           + + ACA +  L  G Q+     +  F SN  V +S++ MYS+CG + + +++F     K
Sbjct: 484 TSISACADLAVLILGNQILAQAEKLGFSSNVSVANSVVTMYSRCGQIEEAQKMFSSIVMK 543

Query: 382 ENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTY 441
            N + WN M++   Q+G   + I +F  M+     PD+I+   +L+ C+HSG V EG  Y
Sbjct: 544 -NLVSWNAMMAGYAQNGQGRKVIEIFEKMLNIGNVPDQISYVSVLSGCSHSGFVSEGQYY 602

Query: 442 FESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHG 501
           F SMT D GI P  EH  C+++LL +AG  +Q  N + +MP++ ++ +W AL   CRIHG
Sbjct: 603 FLSMTKDHGISPMSEHFVCMVDLLGRAGQLEQAKNLINQMPFKPNAAIWGALLAACRIHG 662

Query: 502 NIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWI 561
           N  +    V  L++ + +   ++ LL++IYS  GK + V  VR+L+ ++  +K    SWI
Sbjct: 663 NTKLAELAVKNLLELDAEGPGSYCLLANIYSESGKIQGVTNVRKLMRDKGVRKNPGCSWI 722

Query: 562 EIENKVHAFSVSDSLHP-MRDV 582
           E++N+VH F+V D+ HP ++DV
Sbjct: 723 EVDNRVHVFTVDDTNHPQIKDV 744



 Score =  256 bits (654), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 150/463 (32%), Positives = 244/463 (52%), Gaps = 34/463 (7%)

Query: 59  LQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKN 118
           +++CA  +S+ + +++H  L     K+ + FL NHL++MY  CG   DA +VF  I   N
Sbjct: 11  MKECASLRSIPIARKLHAQLIFMGLKS-SIFLQNHLLNMYSNCGLISDAYRVFGGIMFPN 69

Query: 119 LFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRR 178
           ++S+N M+SG+A+ G M+ A  LF+ M ERD VSWN+M+ GY  +G +E  +K       
Sbjct: 70  VYSWNTMISGFADSGQMREAEKLFEKMPERDSVSWNSMMSGYFHNGELEATIK------- 122

Query: 179 FSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSD 238
                              L  LKL  Q+HG      F  +  + +S++D Y KCG +  
Sbjct: 123 ---------------ASGSLGYLKLALQLHGFAEKFDFGIDTCVETSVLDMYIKCGAMDF 167

Query: 239 ARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLG 298
           A+++F  T    +  W +M+ GY+K G ++ A +LF +MPE++ VSW T+I+  +++G G
Sbjct: 168 AQKVFCRTPNPSLFCWNSMIYGYSKYGSVKKALELFAKMPERDTVSWNTMISILSQHGFG 227

Query: 299 QKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSL 358
            + L  F  M     RPN  T++S L AC SI  L+ G  +H  ++R     +      L
Sbjct: 228 AETLNTFLEMWNQGFRPNSMTYASVLSACTSIYDLEWGAHLHARIVRMEPCLDVYAGCGL 287

Query: 359 IDMYSKCGCLNDGRQVFD-LTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKP 417
           IDMY+KCG L   RQVFD LT++  N++ W ++I  + Q G+ E+A+ LF+ M    V  
Sbjct: 288 IDMYAKCGRLESARQVFDGLTEH--NAVSWTSLIGGVAQAGFQEEALVLFNQMREVPVAS 345

Query: 418 DKITLAVILNACTHSGLVQEGLTYFESM---THDLGIIPNQEHHACLIELLAQAGCSDQL 474
           D+ TLA +L  C    L Q+ ++  E +   T   G+  +      L+ + A+ G   + 
Sbjct: 346 DQFTLATVLGVC----LSQKDISIGEQLHAHTITRGLDSSVPVANALVTMYAKCGDVWKA 401

Query: 475 MNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQN 517
            +  E MP   D   W A+       G+++  R+  D++ ++N
Sbjct: 402 NHAFELMPIR-DIISWTAMITAFSQAGDVEKAREYFDKMPERN 443



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/114 (28%), Positives = 56/114 (49%), Gaps = 5/114 (4%)

Query: 320 FSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTD 379
           F   +  CAS+ S+   +++H  LI    +S+  + + L++MYS CG ++D  +VF    
Sbjct: 7   FYESMKECASLRSIPIARKLHAQLIFMGLKSSIFLQNHLLNMYSNCGLISDAYRVFGGI- 65

Query: 380 NKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSG 433
              N   WNTMIS     G   +A +LF  M       D ++   +++   H+G
Sbjct: 66  MFPNVYSWNTMISGFADSGQMREAEKLFEKMPER----DSVSWNSMMSGYFHNG 115


>gi|224141765|ref|XP_002324235.1| predicted protein [Populus trichocarpa]
 gi|222865669|gb|EEF02800.1| predicted protein [Populus trichocarpa]
          Length = 736

 Score =  345 bits (885), Expect = 4e-92,   Method: Compositional matrix adjust.
 Identities = 194/542 (35%), Positives = 293/542 (54%), Gaps = 40/542 (7%)

Query: 54  TLAFILQQCAESKSLKLGKRVHLH-LKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFD 112
           T   I + C + +    GK+VH H LKL        F+   LI+MY + G  V+AR VFD
Sbjct: 130 TFPSIFKSCTKIRGAHEGKQVHAHVLKLGLEHN--AFVHTSLINMYAQNGELVNARLVFD 187

Query: 113 KIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKF 172
           K  +++  S+  +++GYA+ G +  AR LFD +  RDVVSWN MI GYA+SG VEE + F
Sbjct: 188 KSSMRDAVSFTALITGYASKGFLDEARELFDEIPVRDVVSWNAMISGYAQSGRVEEAMAF 247

Query: 173 YKVLRRFSISCNEFSFAGILTICVKL-EELKLTRQVHGQVLVTGFLSNVVISSSIVDAYA 231
           ++ +RR  ++ N  +   +L+ C +    L+L   V   +   G  SN+ + + ++D Y 
Sbjct: 248 FEEMRRAKVTPNVSTMLSVLSACAQSGSSLQLGNWVRSWIEDRGLGSNIRLVNGLIDMYV 307

Query: 232 KCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAG 291
           KCG                               D+E AS LF ++ +KN VSW  +I G
Sbjct: 308 KCG-------------------------------DLEEASNLFEKIQDKNVVSWNVMIGG 336

Query: 292 YTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRS- 350
           YT     ++AL LF RMM   I PN  TF S L ACA++ +L  GK VH + +  N +S 
Sbjct: 337 YTHMSCYKEALGLFRRMMQSNIDPNDVTFLSILPACANLGALDLGKWVHAY-VDKNMKSM 395

Query: 351 -NTIVM-SSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFH 408
            NT+ + +SLIDMY+KCG L   +++FD  + K  +  WN MIS    HG+ + A+ LF 
Sbjct: 396 KNTVALWTSLIDMYAKCGDLAVAKRIFDCMNTKSLAT-WNAMISGFAMHGHTDTALGLFS 454

Query: 409 DMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQA 468
            M      PD IT   +L AC H+GL+  G  YF SM  D  + P   H+ C+I+L  +A
Sbjct: 455 RMTSEGFVPDDITFVGVLTACKHAGLLSLGRRYFSSMIQDYKVSPKLPHYGCMIDLFGRA 514

Query: 469 GCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLS 528
           G  D+    ++ M  + D  +W +L G CRIH  I++   V   L +  P++ + + LLS
Sbjct: 515 GLFDEAETLVKNMEMKPDGAIWCSLLGACRIHRRIELAESVAKHLFELEPENPSAYVLLS 574

Query: 529 SIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLE 588
           +IY+  G+   V K+R  +N+ + KK    S IE+++ VH F V D +HP  + +Y +L+
Sbjct: 575 NIYAGAGRWEDVAKIRTRLNDNRMKKVPGCSSIEVDSVVHEFLVGDKVHPQSNEIYKMLD 634

Query: 589 QL 590
           ++
Sbjct: 635 EI 636



 Score =  187 bits (476), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 103/307 (33%), Positives = 171/307 (55%), Gaps = 2/307 (0%)

Query: 133 GMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGIL 192
           G + +A +LF  +   + V WN MI G + S +    L++Y  +       NE++F  I 
Sbjct: 76  GDLSYALSLFKTIRNPNHVIWNHMIRGLSSSESPFLALEYYVHMISSGTEPNEYTFPSIF 135

Query: 193 TICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVL 252
             C K+      +QVH  VL  G   N  + +S+++ YA+ GEL +AR +FD++  RD +
Sbjct: 136 KSCTKIRGAHEGKQVHAHVLKLGLEHNAFVHTSLINMYAQNGELVNARLVFDKSSMRDAV 195

Query: 253 TWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILR 312
           ++T +++GYA  G ++ A +LF+E+P ++ VSW  +I+GY ++G  ++A+  F  M   +
Sbjct: 196 SFTALITGYASKGFLDEARELFDEIPVRDVVSWNAMISGYAQSGRVEEAMAFFEEMRRAK 255

Query: 313 IRPNQHTFSSCLCACA-SIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDG 371
           + PN  T  S L ACA S  SL+ G  V  ++      SN  +++ LIDMY KCG L + 
Sbjct: 256 VTPNVSTMLSVLSACAQSGSSLQLGNWVRSWIEDRGLGSNIRLVNGLIDMYVKCGDLEEA 315

Query: 372 RQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTH 431
             +F+   +K N + WN MI   T     ++A+ LF  M++S++ P+ +T   IL AC +
Sbjct: 316 SNLFEKIQDK-NVVSWNVMIGGYTHMSCYKEALGLFRRMMQSNIDPNDVTFLSILPACAN 374

Query: 432 SGLVQEG 438
            G +  G
Sbjct: 375 LGALDLG 381



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 95/372 (25%), Positives = 160/372 (43%), Gaps = 69/372 (18%)

Query: 31  GQLSEAISSLDLLAQRGIRLPAETLAFILQQCAES-KSLKLGKRVHLHLKLTQRKTPTTF 89
           G++ EA++  + + +  +     T+  +L  CA+S  SL+LG  V   ++   R   +  
Sbjct: 239 GRVEEAMAFFEEMRRAKVTPNVSTMLSVLSACAQSGSSLQLGNWVRSWIE--DRGLGSNI 296

Query: 90  -LSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAER 148
            L N LI MY KCG   +A  +F+KI  KN+ S+N M+ GY ++   K A  LF  M + 
Sbjct: 297 RLVNGLIDMYVKCGDLEEASNLFEKIQDKNVVSWNVMIGGYTHMSCYKEALGLFRRMMQS 356

Query: 149 DVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVH 208
           +                               I  N+ +F  IL  C  L  L L + VH
Sbjct: 357 N-------------------------------IDPNDVTFLSILPACANLGALDLGKWVH 385

Query: 209 GQVL--VTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGD 266
             V   +    + V + +S++D YAKCG+L+ A+R+FD  + + + TW  M+SG+A    
Sbjct: 386 AYVDKNMKSMKNTVALWTSLIDMYAKCGDLAVAKRIFDCMNTKSLATWNAMISGFA---- 441

Query: 267 MESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCA 326
                                 + G+T   LG     LF+RM      P+  TF   L A
Sbjct: 442 ----------------------MHGHTDTALG-----LFSRMTSEGFVPDDITFVGVLTA 474

Query: 327 CASIVSLKHGKQVHGFLIRTNFRSNTIV-MSSLIDMYSKCGCLNDGRQVFDLTDNKENSM 385
           C     L  G++    +I+    S  +     +ID++ + G  ++   +    + K +  
Sbjct: 475 CKHAGLLSLGRRYFSSMIQDYKVSPKLPHYGCMIDLFGRAGLFDEAETLVKNMEMKPDGA 534

Query: 386 LWNTMISALTQH 397
           +W +++ A   H
Sbjct: 535 IWCSLLGACRIH 546



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 83/336 (24%), Positives = 138/336 (41%), Gaps = 64/336 (19%)

Query: 192 LTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVD--AYAKCGELSDARRLFDETDAR 249
           LT+    + L+  +Q+H Q++ TG  +     S +++  A +  G+LS A  L       
Sbjct: 32  LTLLSNCKTLQTLKQIHSQIIKTGLHNTHFALSKLIEFCAVSPHGDLSYALSL------- 84

Query: 250 DVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMM 309
                                   F  +   N V W  +I G + +     ALE +  M+
Sbjct: 85  ------------------------FKTIRNPNHVIWNHMIRGLSSSESPFLALEYYVHMI 120

Query: 310 ILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLN 369
                PN++TF S   +C  I     GKQVH  +++     N  V +SLI+MY++ G L 
Sbjct: 121 SSGTEPNEYTFPSIFKSCTKIRGAHEGKQVHAHVLKLGLEHNAFVHTSLINMYAQNGELV 180

Query: 370 DGRQVFDLTDNKE------------------------------NSMLWNTMISALTQHGY 399
           + R VFD +  ++                              + + WN MIS   Q G 
Sbjct: 181 NARLVFDKSSMRDAVSFTALITGYASKGFLDEARELFDEIPVRDVVSWNAMISGYAQSGR 240

Query: 400 DEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHA 459
            E+A+  F +M R+ V P+  T+  +L+AC  SG   +   +  S   D G+  N     
Sbjct: 241 VEEAMAFFEEMRRAKVTPNVSTMLSVLSACAQSGSSLQLGNWVRSWIEDRGLGSNIRLVN 300

Query: 460 CLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHG 495
            LI++  + G  ++  N  EK+  + +   WN + G
Sbjct: 301 GLIDMYVKCGDLEEASNLFEKIQ-DKNVVSWNVMIG 335


>gi|297822703|ref|XP_002879234.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297325073|gb|EFH55493.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 740

 Score =  345 bits (884), Expect = 6e-92,   Method: Compositional matrix adjust.
 Identities = 178/553 (32%), Positives = 306/553 (55%), Gaps = 35/553 (6%)

Query: 40  LDLLAQRGIRLPAE-TLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMY 98
           LD+++      P + T  F+++  AE  SL LG+ +H  + +        F++N LI  Y
Sbjct: 120 LDMVSSESQCYPNKYTFPFLIKAAAEVSSLSLGQSLH-GMAIKSAVGSDVFVANSLIHCY 178

Query: 99  FKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMII 158
           F CG D+D+                              A  +F  + E+DVVSWN+MI 
Sbjct: 179 FSCG-DLDS------------------------------ACKVFTTIKEKDVVSWNSMIN 207

Query: 159 GYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLS 218
           G+ + G+ ++ L+ +K +    +  +  +  G+L+ C K+ +L+  R+V   +       
Sbjct: 208 GFVQKGSPDKALELFKKMESEDVKASHVTMVGVLSACAKIRDLEFGRRVCSYIEENRVNV 267

Query: 219 NVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMP 278
           N+ ++++++D Y KCG + DA+RLFD  + +D +TWTTM+ GYA   D E+A ++ N MP
Sbjct: 268 NLTLANAMLDMYTKCGSIEDAKRLFDAMEEKDNVTWTTMLDGYAISEDYEAAREVLNAMP 327

Query: 279 EKNPVSWTTLIAGYTRNGLGQKALELFTRMMILR-IRPNQHTFSSCLCACASIVSLKHGK 337
           +K+ V+W  LI+ Y +NG   +AL +F  + + + I+ NQ T  S L ACA + +L+ G+
Sbjct: 328 KKDIVAWNALISAYEQNGKPNEALLVFHELQLQKNIKLNQITLVSTLSACAQVGALELGR 387

Query: 338 QVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQH 397
            +H ++ +   + N  V S+LI MYSKCG L   R+VF+  + K +  +W+ MI  L  H
Sbjct: 388 WIHSYIKKNGIKMNFYVTSALIHMYSKCGDLEKAREVFNSVE-KRDVFVWSAMIGGLAMH 446

Query: 398 GYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEH 457
           G   +A+ +F+ M  ++VKP+ +T   +  AC+H+GLV E  + F  M    GI+P  +H
Sbjct: 447 GCGSEAVDMFYKMQEANVKPNGVTFTNVFCACSHTGLVDEAESLFYKMESSYGIVPEDKH 506

Query: 458 HACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQN 517
           +AC++++L ++G  ++ +  +E MP    + +W AL G C+IH N+ +      +L++  
Sbjct: 507 YACIVDVLGRSGYLEKAVKFIEAMPIPPSTSVWGALLGACKIHANLSLAEMACTRLLELE 566

Query: 518 PQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLH 577
           P++   H LLS+IY+  GK   V ++R+ +     KKE   S IEI+  +H F   D+ H
Sbjct: 567 PRNDGAHVLLSNIYAKSGKWDNVSELRKHMRVTGLKKEPGCSSIEIDGMIHEFLSGDNAH 626

Query: 578 PMRDVLYSVLEQL 590
           PM + +Y  L ++
Sbjct: 627 PMSEKVYGKLHEV 639



 Score =  154 bits (388), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 86/296 (29%), Positives = 156/296 (52%), Gaps = 9/296 (3%)

Query: 18  NCLIQSFLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLH 77
           N +I  F   + KG   +A+     +    ++    T+  +L  CA+ + L+ G+RV  +
Sbjct: 203 NSMINGF---VQKGSPDKALELFKKMESEDVKASHVTMVGVLSACAKIRDLEFGRRVCSY 259

Query: 78  LKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKH 137
           ++  +     T L+N ++ MY KCGS  DA+++FD +  K+  ++  ML GYA     + 
Sbjct: 260 IEENRVNVNLT-LANAMLDMYTKCGSIEDAKRLFDAMEEKDNVTWTTMLDGYAISEDYEA 318

Query: 138 ARNLFDNMAERDVVSWNTMIIGYAKSGAVEEG-LKFYKVLRRFSISCNEFSFAGILTICV 196
           AR + + M ++D+V+WN +I  Y ++G   E  L F+++  + +I  N+ +    L+ C 
Sbjct: 319 AREVLNAMPKKDIVAWNALISAYEQNGKPNEALLVFHELQLQKNIKLNQITLVSTLSACA 378

Query: 197 KLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTT 256
           ++  L+L R +H  +   G   N  ++S+++  Y+KCG+L  AR +F+  + RDV  W+ 
Sbjct: 379 QVGALELGRWIHSYIKKNGIKMNFYVTSALIHMYSKCGDLEKAREVFNSVEKRDVFVWSA 438

Query: 257 MVSGYAKLGDMESASKLFNEMPE----KNPVSWTTLIAGYTRNGLGQKALELFTRM 308
           M+ G A  G    A  +F +M E     N V++T +    +  GL  +A  LF +M
Sbjct: 439 MIGGLAMHGCGSEAVDMFYKMQEANVKPNGVTFTNVFCACSHTGLVDEAESLFYKM 494



 Score = 99.4 bits (246), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 68/238 (28%), Positives = 111/238 (46%), Gaps = 35/238 (14%)

Query: 195 CVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTW 254
           C  L +LK   Q H  ++ TG  S         D Y+       A +LF           
Sbjct: 41  CSSLRQLK---QTHAHMIRTGMFS---------DPYS-------ASKLF----------- 70

Query: 255 TTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMI--LR 312
              ++  +    +E A K+F+E+P+ N  +W TLI  Y        ++  F  M+    +
Sbjct: 71  --AIAALSSFASLEYARKVFDEIPQPNSFTWNTLIRAYASGPDPVCSIWAFLDMVSSESQ 128

Query: 313 IRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGR 372
             PN++TF   + A A + SL  G+ +HG  I++   S+  V +SLI  Y  CG L+   
Sbjct: 129 CYPNKYTFPFLIKAAAEVSSLSLGQSLHGMAIKSAVGSDVFVANSLIHCYFSCGDLDSAC 188

Query: 373 QVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACT 430
           +VF  T  +++ + WN+MI+   Q G  ++A+ LF  M    VK   +T+  +L+AC 
Sbjct: 189 KVFT-TIKEKDVVSWNSMINGFVQKGSPDKALELFKKMESEDVKASHVTMVGVLSACA 245


>gi|224108621|ref|XP_002314911.1| predicted protein [Populus trichocarpa]
 gi|222863951|gb|EEF01082.1| predicted protein [Populus trichocarpa]
          Length = 743

 Score =  344 bits (883), Expect = 6e-92,   Method: Compositional matrix adjust.
 Identities = 190/594 (31%), Positives = 318/594 (53%), Gaps = 37/594 (6%)

Query: 11  NRKNLPNNCLIQSFLSLISKGQLSEAISSLDLLAQRGI-RLPAETLAFILQQCAESKSLK 69
           NR  +  N LI  +   +  G + EA+ + + + + G+  L   T + +L   +    + 
Sbjct: 99  NRDGVSWNSLISGY---VCYGSVVEAVKTYNSMMKDGVLNLNRITFSTMLLLVSSQGCVD 155

Query: 70  LGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGY 129
           LG+++H  + +        F+ + L+ MY K G    A +VFD++  +N+  YN M++G 
Sbjct: 156 LGRQIHGQI-VKFGFGAYVFVGSSLVDMYAKMGLVSVASQVFDEVQERNVVMYNTMITGL 214

Query: 130 ANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFA 189
              GM+K ++ LF  M ERD +SW TMI G  ++G   E +  ++ +R+  ++ ++++F 
Sbjct: 215 LRSGMVKDSKRLFHGMKERDSISWTTMITGLIQNGLEAEAMDLFRDMRQEGMAMDQYTFG 274

Query: 190 GILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDAR 249
            +LT C  L  LK  +++H  ++ +G+  NV + S++VD Y KC               R
Sbjct: 275 SVLTACGGLRALKEGKEIHTLIIRSGYNHNVFVGSALVDMYCKC---------------R 319

Query: 250 DVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMM 309
            V                  A  +F  M  KN VSWT ++ GY +NG  ++A+ +F  M 
Sbjct: 320 SV----------------RYAEAVFKRMANKNVVSWTAMLVGYGQNGFSEEAVRVFCDMQ 363

Query: 310 ILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLN 369
              I P+  T  S + +CA++ SL+ G Q H   + +   S   V ++LI +Y KCG + 
Sbjct: 364 RNGIEPDDFTLGSVISSCANLASLEEGAQFHCQALVSGLISFITVSNALITLYGKCGSIE 423

Query: 370 DGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNAC 429
           D  Q+FD    ++  + W  ++S   Q G   + I LF  M+   +KPD +T   +L+AC
Sbjct: 424 DSNQLFDEMSFRDE-VSWTALVSGYAQFGKANETIDLFERMLVQGLKPDAVTFIAVLSAC 482

Query: 430 THSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYL 489
           + +GLV+ G  YFESM  D GIIP  +H+ C+I+L  +AG  ++  N + KMP+  DS  
Sbjct: 483 SRAGLVERGQQYFESMLKDHGIIPFSDHYTCMIDLFGRAGRLEEAKNFINKMPFSPDSIG 542

Query: 490 WNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINE 549
           W  L   CR++GN ++G+   + L++ +PQ+ A + LLSSIY+A GK   V ++R+ + E
Sbjct: 543 WATLLSSCRLYGNEEIGKWAAESLLELDPQNPAGYILLSSIYAAKGKWSNVAQLRRGMRE 602

Query: 550 RQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQMGEDAPSLDA 603
           +  +KE   SWI+ ++KV+ FS  D   P  D +Y+ LE+L  +M E+    DA
Sbjct: 603 KGARKEPGFSWIKYKSKVYIFSADDQSSPFSDQIYAELEKLNHKMIEEGYVPDA 656



 Score =  280 bits (715), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 162/485 (33%), Positives = 267/485 (55%), Gaps = 7/485 (1%)

Query: 62  CAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFS 121
           C E+++    K++H  L +     P TFL N+LI+ Y K G+   AR VFDK+P  N FS
Sbjct: 15  CCETRNQTQAKKLHC-LIIKSLTNPETFLYNNLINAYSKLGNITYARHVFDKMPQPNSFS 73

Query: 122 YNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYK-VLRRFS 180
           +N MLS Y+  G +   + +F  M  RD VSWN++I GY   G+V E +K Y  +++   
Sbjct: 74  WNTMLSAYSKSGDLSTMQEIFSIMPNRDGVSWNSLISGYVCYGSVVEAVKTYNSMMKDGV 133

Query: 181 ISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDAR 240
           ++ N  +F+ +L +      + L RQ+HGQ++  GF + V + SS+VD YAK G +S A 
Sbjct: 134 LNLNRITFSTMLLLVSSQGCVDLGRQIHGQIVKFGFGAYVFVGSSLVDMYAKMGLVSVAS 193

Query: 241 RLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQK 300
           ++FDE   R+V+ + TM++G  + G ++ + +LF+ M E++ +SWTT+I G  +NGL  +
Sbjct: 194 QVFDEVQERNVVMYNTMITGLLRSGMVKDSKRLFHGMKERDSISWTTMITGLIQNGLEAE 253

Query: 301 ALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLID 360
           A++LF  M    +  +Q+TF S L AC  + +LK GK++H  +IR+ +  N  V S+L+D
Sbjct: 254 AMDLFRDMRQEGMAMDQYTFGSVLTACGGLRALKEGKEIHTLIIRSGYNHNVFVGSALVD 313

Query: 361 MYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKI 420
           MY KC  +     VF    NK N + W  M+    Q+G+ E+A+R+F DM R+ ++PD  
Sbjct: 314 MYCKCRSVRYAEAVFKRMANK-NVVSWTAMLVGYGQNGFSEEAVRVFCDMQRNGIEPDDF 372

Query: 421 TLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEK 480
           TL  ++++C +   ++EG   F       G+I        LI L  + G  +      ++
Sbjct: 373 TLGSVISSCANLASLEEG-AQFHCQALVSGLISFITVSNALITLYGKCGSIEDSNQLFDE 431

Query: 481 MPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLV 540
           M +  D   W AL       G  +    + ++++ Q  +  A      ++ SA  +  LV
Sbjct: 432 MSF-RDEVSWTALVSGYAQFGKANETIDLFERMLVQGLKPDAV--TFIAVLSACSRAGLV 488

Query: 541 EKVRQ 545
           E+ +Q
Sbjct: 489 ERGQQ 493



 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 76/258 (29%), Positives = 143/258 (55%), Gaps = 10/258 (3%)

Query: 194 ICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLT 253
           +C +       +++H  ++ +       + +++++AY+K G ++ AR +FD+    +  +
Sbjct: 14  LCCETRNQTQAKKLHCLIIKSLTNPETFLYNNLINAYSKLGNITYARHVFDKMPQPNSFS 73

Query: 254 WTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMM---I 310
           W TM+S Y+K GD+ +  ++F+ MP ++ VSW +LI+GY   G   +A++ +  MM   +
Sbjct: 74  WNTMLSAYSKSGDLSTMQEIFSIMPNRDGVSWNSLISGYVCYGSVVEAVKTYNSMMKDGV 133

Query: 311 LRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLND 370
           L +  N+ TFS+ L   +S   +  G+Q+HG +++  F +   V SSL+DMY+K G ++ 
Sbjct: 134 LNL--NRITFSTMLLLVSSQGCVDLGRQIHGQIVKFGFGAYVFVGSSLVDMYAKMGLVSV 191

Query: 371 GRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACT 430
             QVFD    + N +++NTMI+ L + G  + + RLFH M     + D I+   ++    
Sbjct: 192 ASQVFDEVQER-NVVMYNTMITGLLRSGMVKDSKRLFHGM----KERDSISWTTMITGLI 246

Query: 431 HSGLVQEGLTYFESMTHD 448
            +GL  E +  F  M  +
Sbjct: 247 QNGLEAEAMDLFRDMRQE 264


>gi|225438894|ref|XP_002279137.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
           chloroplastic-like [Vitis vinifera]
          Length = 628

 Score =  344 bits (883), Expect = 6e-92,   Method: Compositional matrix adjust.
 Identities = 178/487 (36%), Positives = 279/487 (57%), Gaps = 9/487 (1%)

Query: 108 RKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVE 167
           R   D  P+ N      +   YA+LG + ++  LF       V  W  +I G+A  G  E
Sbjct: 55  RHGLDHHPILNF----KLQRSYASLGRLDYSVALFGRTQNPSVFFWTAIIHGHALRGLHE 110

Query: 168 EGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIV 227
           + L FY  +    +  N F+F+ IL +C     ++  + +H Q +  GF S++ + + ++
Sbjct: 111 QALNFYAQMLTQGVEPNAFTFSSILKLC----PIEPGKALHSQAVKLGFDSDLYVRTGLL 166

Query: 228 DAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTT 287
           D YA+ G++  A++LFD    + +++ T M++ YAK G++++A  LF+ M E++ V W  
Sbjct: 167 DVYARGGDVVSAQQLFDTMPEKSLVSLTAMLTCYAKHGELDAARVLFDGMEERDGVCWNV 226

Query: 288 LIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTN 347
           +I GYT+NG+  +AL LF RM+  + +PN+ T  S L AC  + +L+ G+ VH ++    
Sbjct: 227 MIDGYTQNGMPNEALVLFRRMLKAKAKPNEVTVLSVLSACGQLGALESGRWVHSYIENNG 286

Query: 348 FRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLF 407
            + N  V ++L+DMYSKCG L D R VFD  D+K+  + WN+MI     HG+ ++A++LF
Sbjct: 287 IQFNVHVGTALVDMYSKCGSLEDARLVFDKIDDKD-VVAWNSMIVGYAMHGFSQEALQLF 345

Query: 408 HDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQ 467
             M R  + P  IT   IL+AC HSG V EG   F  M  + GI P  EH+ C++ LL +
Sbjct: 346 KSMCRMGLHPTNITFIGILSACGHSGWVTEGWDIFNKMKDEYGIEPKIEHYGCMVNLLGR 405

Query: 468 AGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLL 527
           AG  +Q    ++ M  E D  LW  L G CR+HG I +G K+V+ L+DQN  +S T+ LL
Sbjct: 406 AGHVEQAYELVKNMNIEPDPVLWGTLLGACRLHGKIALGEKIVELLVDQNLANSGTYILL 465

Query: 528 SSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVL 587
           S+IY+A+G    V ++R ++ +   KKE   S IE+ NKVH F      HP R  +Y +L
Sbjct: 466 SNIYAAVGNWDGVARLRTMMKDSGVKKEPGCSSIEVNNKVHEFLAGGLNHPKRKEIYMML 525

Query: 588 EQLAGQM 594
           E++ G +
Sbjct: 526 EEINGWL 532



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 114/416 (27%), Positives = 183/416 (43%), Gaps = 84/416 (20%)

Query: 30  KGQLSEAISSLDLLAQRGIRLPAETLAFILQQCA-------ESKSLKLGKRVHLHLKLTQ 82
           +G   +A++    +  +G+   A T + IL+ C         S+++KLG    L+++   
Sbjct: 106 RGLHEQALNFYAQMLTQGVEPNAFTFSSILKLCPIEPGKALHSQAVKLGFDSDLYVR--- 162

Query: 83  RKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLF 142
                      L+ +Y + G  V A+++FD +P K+L S   ML+ YA  G +  AR LF
Sbjct: 163 ---------TGLLDVYARGGDVVSAQQLFDTMPEKSLVSLTAMLTCYAKHGELDAARVLF 213

Query: 143 DNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELK 202
           D M ERD V WN MI GY ++G   E L  ++ + +     NE +   +L+ C +L  L+
Sbjct: 214 DGMEERDGVCWNVMIDGYTQNGMPNEALVLFRRMLKAKAKPNEVTVLSVLSACGQLGALE 273

Query: 203 LTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYA 262
             R VH  +   G   NV + +++VD Y+KCG L DAR +FD+ D +DV+ W +M+ GYA
Sbjct: 274 SGRWVHSYIENNGIQFNVHVGTALVDMYSKCGSLEDARLVFDKIDDKDVVAWNSMIVGYA 333

Query: 263 KLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSS 322
                                           +G  Q+AL+LF  M  + + P   TF  
Sbjct: 334 -------------------------------MHGFSQEALQLFKSMCRMGLHPTNITFIG 362

Query: 323 CLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKE 382
            L AC     +  G  +       N   +   +   I+ Y   GC               
Sbjct: 363 ILSACGHSGWVTEGWDIF------NKMKDEYGIEPKIEHY---GC--------------- 398

Query: 383 NSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEG 438
                  M++ L + G+ EQA  L  +M   +++PD +    +L AC   G +  G
Sbjct: 399 -------MVNLLGRAGHVEQAYELVKNM---NIEPDPVLWGTLLGACRLHGKIALG 444



 Score = 95.1 bits (235), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 73/326 (22%), Positives = 135/326 (41%), Gaps = 67/326 (20%)

Query: 206 QVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLG 265
           Q+H  +   G   + +++  +  +YA  G L  +  LF  T    V  WT ++ G+A   
Sbjct: 48  QIHAVLFRHGLDHHPILNFKLQRSYASLGRLDYSVALFGRTQNPSVFFWTAIIHGHA--- 104

Query: 266 DMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLC 325
                                         GL ++AL  + +M+   + PN  TFSS L 
Sbjct: 105 ----------------------------LRGLHEQALNFYAQMLTQGVEPNAFTFSSILK 136

Query: 326 ACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNK---- 381
            C     ++ GK +H   ++  F S+  V + L+D+Y++ G +   +Q+FD    K    
Sbjct: 137 LCP----IEPGKALHSQAVKLGFDSDLYVRTGLLDVYARGGDVVSAQQLFDTMPEKSLVS 192

Query: 382 --------------------------ENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSV 415
                                      + + WN MI   TQ+G   +A+ LF  M+++  
Sbjct: 193 LTAMLTCYAKHGELDAARVLFDGMEERDGVCWNVMIDGYTQNGMPNEALVLFRRMLKAKA 252

Query: 416 KPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLM 475
           KP+++T+  +L+AC   G ++ G  +  S   + GI  N      L+++ ++ G  +   
Sbjct: 253 KPNEVTVLSVLSACGQLGALESG-RWVHSYIENNGIQFNVHVGTALVDMYSKCGSLEDAR 311

Query: 476 NQLEKMPYEHDSYLWNALHGVCRIHG 501
              +K+  + D   WN++     +HG
Sbjct: 312 LVFDKID-DKDVVAWNSMIVGYAMHG 336


>gi|225450539|ref|XP_002277347.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 808

 Score =  344 bits (883), Expect = 7e-92,   Method: Compositional matrix adjust.
 Identities = 187/583 (32%), Positives = 311/583 (53%), Gaps = 33/583 (5%)

Query: 54  TLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDK 113
           T   ++Q CA       GK +H H+ L        ++ N LI+MY  CG+  DARK+FD+
Sbjct: 143 TYPLVVQACAVRLLEFGGKEIHDHV-LKVGFDSDVYVQNTLINMYAVCGNMRDARKLFDE 201

Query: 114 IPVKNLFSYNNMLSGY-------------------------------ANLGMMKHARNLF 142
            PV +  S+N++L+GY                                 +G +  A  LF
Sbjct: 202 SPVLDSVSWNSILAGYVKKGDVEEAKLIFDQMPQRNIVASNSMIVLLGKMGQVMEAWKLF 261

Query: 143 DNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELK 202
           + M E+D+VSW+ +I GY ++G  EE L  +  +    +  +E     +L+ C  L  +K
Sbjct: 262 NEMDEKDMVSWSALISGYEQNGMYEEALVMFIEMNANGMRLDEVVVVSVLSACAHLSIVK 321

Query: 203 LTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYA 262
             + +HG V+  G  S V + ++++  Y+  GE+ DA++LF+ +   D ++W +M+SG  
Sbjct: 322 TGKMIHGLVIRMGIESYVNLQNALIHMYSGSGEIMDAQKLFNGSHNLDQISWNSMISGCM 381

Query: 263 KLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSS 322
           K G +E A  LF+ MPEK+ VSW+ +I+GY ++    + L LF  M + +IRP++    S
Sbjct: 382 KCGSVEKARALFDVMPEKDIVSWSAVISGYAQHDCFSETLALFHEMQLGQIRPDETILVS 441

Query: 323 CLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKE 382
            + AC  + +L  GK VH ++ +   + N I+ ++L+DMY KCGC+ +  +VF+  + K 
Sbjct: 442 VISACTHLAALDQGKWVHAYIRKNGLKVNVILGTTLLDMYMKCGCVENALEVFNGMEEKG 501

Query: 383 NSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYF 442
            S  WN +I  L  +G  E+++ +F +M  + V P++IT   +L AC H GLV EG  +F
Sbjct: 502 VSS-WNALIIGLAVNGLVERSLDMFSEMKNNGVIPNEITFMGVLGACRHMGLVDEGRCHF 560

Query: 443 ESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGN 502
            SM    GI PN +H+ C+++LL +AG  ++    +E MP   D   W AL G C+ HG+
Sbjct: 561 ASMIEKHGIEPNVKHYGCMVDLLGRAGLLNEAEKLIESMPMAPDVATWGALLGACKKHGD 620

Query: 503 IDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIE 562
            +MG +V  +LI+  P     H LLS+I+++ G    V +VR ++ ++   K    S IE
Sbjct: 621 TEMGERVGRKLIELQPDHDGFHVLLSNIFASKGDWEDVLEVRGMMKQQGVVKTPGCSLIE 680

Query: 563 IENKVHAFSVSDSLHPMRDVLYSVLEQLAGQMGEDAPSLDADR 605
               VH F   D  HP  + +  +L ++A ++  +  + D + 
Sbjct: 681 ANGVVHEFLAGDKTHPWINKVEGMLNEMAKRLKMEGYAPDTNE 723



 Score =  195 bits (495), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 118/422 (27%), Positives = 205/422 (48%), Gaps = 67/422 (15%)

Query: 135 MKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTI 194
           + ++  +FD +   +   WNTM+  Y +S + E+ L  YK++ + ++  + +++  ++  
Sbjct: 91  LDYSLQIFDRIENSNGFMWNTMMRAYIQSNSAEKALLLYKLMVKNNVGPDNYTYPLVVQA 150

Query: 195 C-VKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLT 253
           C V+L E    +++H  VL  GF S+V + +++++ YA CG + DAR+LFDE+   D ++
Sbjct: 151 CAVRLLEFG-GKEIHDHVLKVGFDSDVYVQNTLINMYAVCGNMRDARKLFDESPVLDSVS 209

Query: 254 WTTMVSGYAKLGDMESAS-------------------------------KLFNEMPEKNP 282
           W ++++GY K GD+E A                                KLFNEM EK+ 
Sbjct: 210 WNSILAGYVKKGDVEEAKLIFDQMPQRNIVASNSMIVLLGKMGQVMEAWKLFNEMDEKDM 269

Query: 283 VSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGF 342
           VSW+ LI+GY +NG+ ++AL +F  M    +R ++    S L ACA +  +K GK +HG 
Sbjct: 270 VSWSALISGYEQNGMYEEALVMFIEMNANGMRLDEVVVVSVLSACAHLSIVKTGKMIHGL 329

Query: 343 LIRTNFRSNTIVMSSLIDMYS-------------------------------KCGCLNDG 371
           +IR    S   + ++LI MYS                               KCG +   
Sbjct: 330 VIRMGIESYVNLQNALIHMYSGSGEIMDAQKLFNGSHNLDQISWNSMISGCMKCGSVEKA 389

Query: 372 RQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTH 431
           R +FD+   K+  + W+ +IS   QH    + + LFH+M    ++PD+  L  +++ACTH
Sbjct: 390 RALFDVMPEKD-IVSWSAVISGYAQHDCFSETLALFHEMQLGQIRPDETILVSVISACTH 448

Query: 432 SGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWN 491
              + +G  +  +     G+  N      L+++  + GC +  +     M  E     WN
Sbjct: 449 LAALDQG-KWVHAYIRKNGLKVNVILGTTLLDMYMKCGCVENALEVFNGME-EKGVSSWN 506

Query: 492 AL 493
           AL
Sbjct: 507 AL 508



 Score =  146 bits (369), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 104/412 (25%), Positives = 186/412 (45%), Gaps = 43/412 (10%)

Query: 23  SFLSLIS----KGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHL 78
           S+ +LIS     G   EA+     +   G+RL    +  +L  CA    +K GK +H   
Sbjct: 271 SWSALISGYEQNGMYEEALVMFIEMNANGMRLDEVVVVSVLSACAHLSIVKTGKMIH--- 327

Query: 79  KLTQRKTPTTF--LSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMK 136
            L  R    ++  L N LI MY   G  +DA+K+F+     +  S+N+M+SG    G ++
Sbjct: 328 GLVIRMGIESYVNLQNALIHMYSGSGEIMDAQKLFNGSHNLDQISWNSMISGCMKCGSVE 387

Query: 137 HARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICV 196
            AR LFD M E+D+VSW+ +I GYA+     E L  +  ++   I  +E     +++ C 
Sbjct: 388 KARALFDVMPEKDIVSWSAVISGYAQHDCFSETLALFHEMQLGQIRPDETILVSVISACT 447

Query: 197 KLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTT 256
            L  L   + VH  +   G   NV++ ++++D Y KCG + +A  +F+  + + V +W  
Sbjct: 448 HLAALDQGKWVHAYIRKNGLKVNVILGTTLLDMYMKCGCVENALEVFNGMEEKGVSSWNA 507

Query: 257 MVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPN 316
           ++ G A                                NGL +++L++F+ M    + PN
Sbjct: 508 LIIGLA-------------------------------VNGLVERSLDMFSEMKNNGVIPN 536

Query: 317 QHTFSSCLCACASIVSLKHGKQVHGFLI-RTNFRSNTIVMSSLIDMYSKCGCLNDGRQVF 375
           + TF   L AC  +  +  G+     +I +     N      ++D+  + G LN+  ++ 
Sbjct: 537 EITFMGVLGACRHMGLVDEGRCHFASMIEKHGIEPNVKHYGCMVDLLGRAGLLNEAEKLI 596

Query: 376 DLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILN 427
           +      +   W  ++ A  +HG  E   R+   ++   ++PD     V+L+
Sbjct: 597 ESMPMAPDVATWGALLGACKKHGDTEMGERVGRKLIE--LQPDHDGFHVLLS 646


>gi|224137724|ref|XP_002322628.1| predicted protein [Populus trichocarpa]
 gi|222867258|gb|EEF04389.1| predicted protein [Populus trichocarpa]
          Length = 559

 Score =  344 bits (883), Expect = 8e-92,   Method: Compositional matrix adjust.
 Identities = 190/538 (35%), Positives = 313/538 (58%), Gaps = 31/538 (5%)

Query: 94  LISMYFKCGSDVDARKVFDKI-PVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVS 152
           +IS Y KCG  VDAR++FD++  +K++ ++  MLSGY  L  ++ A  LF+ M  ++VVS
Sbjct: 12  VISGYIKCGLIVDARRLFDRVDAIKDVVTWTAMLSGYVRLKRIEEAERLFEVMPVKNVVS 71

Query: 153 WNTMIIGYAKSGAVEEGLK-FYKVLRRFSISCNEFSFAGILTICVKLEE----------- 200
           WNTMI GY K+  V++ ++ F ++  R  +S N  +    L  C ++EE           
Sbjct: 72  WNTMIDGYGKNREVDKAIEVFERMHERNMVSWN--AVIAALVQCGRVEEARRRFDEMPKR 129

Query: 201 --LKLTRQVHG-----------QVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETD 247
             +  T  V G           +V       NVV  +++V  YAK   L +A  LF+   
Sbjct: 130 DVISWTTMVMGLARSGRVDEARKVFDRMPERNVVSWNAMVTGYAKNMRLDEAFDLFERMP 189

Query: 248 ARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTR 307
            R++ +W TM++G+ + G++  A K+FNEMPEKN VSWTT+I GY + G  + AL++F  
Sbjct: 190 ERNLSSWNTMITGFIQNGELAWARKVFNEMPEKNVVSWTTMITGYVQEGESESALKVFVE 249

Query: 308 MMI-LRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCG 366
           M+     RPN+ TF + L AC+ +  L  G+QVH  + ++ ++  T V S+L++MYSKCG
Sbjct: 250 MIKDGGARPNEGTFVNVLGACSDMAGLGEGQQVHLLISKSVYQDRTFVASALLNMYSKCG 309

Query: 367 CLNDGRQVFD-LTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVI 425
            L+  R++FD +  ++ + +LWN MI+A   HG   +AI LF DM     KP+ ++   +
Sbjct: 310 ELSIARKIFDDVVISQRDLVLWNGMIAAYAHHGCGMEAIELFEDMQGLGFKPNDVSYVEL 369

Query: 426 LNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEH 485
           L+AC+H+GLV EGL YF+ +  D  I   ++HHACL++L  +AG   +  + ++++  + 
Sbjct: 370 LSACSHAGLVDEGLNYFDELGRDNSIQLREDHHACLVDLCGRAGRLKEAYDFIKQLGTKA 429

Query: 486 DSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQ 545
            S +W  L   C  HG++++G+    +L  ++P+++ T+ LLS+IY++  K R   +VR 
Sbjct: 430 SSSIWGGLLAGCNAHGDLEIGQLAAKELEKEDPENAGTYLLLSNIYASGRKWREASRVRL 489

Query: 546 LINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQM-GEDAPSLD 602
            + E+  KK+   SWIE+ N+VH F   D  H   +++YS++  +  +M  E  P+ D
Sbjct: 490 KMKEKGLKKQPGCSWIEVGNRVHVFLARDKSHYQSNLIYSLVHDIHAEMKAEHVPNND 547



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 90/326 (27%), Positives = 161/326 (49%), Gaps = 54/326 (16%)

Query: 117 KNLFSYNNMLSGYANLGMMKHARNLFDNM-AERDVVSWNTMIIGYAKSGAVEEGLKFYKV 175
           +++ ++  ++SGY   G++  AR LFD + A +DVV+W  M+ GY +   +EE  + ++V
Sbjct: 4   RDVVTWTAVISGYIKCGLIVDARRLFDRVDAIKDVVTWTAMLSGYVRLKRIEEAERLFEV 63

Query: 176 LRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFL--SNVVISSSIVDAYAKC 233
           +              +++    ++     R+V   + V   +   N+V  ++++ A  +C
Sbjct: 64  M----------PVKNVVSWNTMIDGYGKNREVDKAIEVFERMHERNMVSWNAVIAALVQC 113

Query: 234 GELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYT 293
           G + +ARR FDE   RDV++WTTMV G A+ G ++ A K+F+ MPE+N VSW  ++ GY 
Sbjct: 114 GRVEEARRRFDEMPKRDVISWTTMVMGLARSGRVDEARKVFDRMPERNVVSWNAMVTGYA 173

Query: 294 RNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTI 353
           +N    +A +LF RM      P ++  S                                
Sbjct: 174 KNMRLDEAFDLFERM------PERNLSS-------------------------------- 195

Query: 354 VMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVR- 412
             +++I  + + G L   R+VF+    K N + W TMI+   Q G  E A+++F +M++ 
Sbjct: 196 -WNTMITGFIQNGELAWARKVFNEMPEK-NVVSWTTMITGYVQEGESESALKVFVEMIKD 253

Query: 413 SSVKPDKITLAVILNACTHSGLVQEG 438
              +P++ T   +L AC+    + EG
Sbjct: 254 GGARPNEGTFVNVLGACSDMAGLGEG 279



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 91/335 (27%), Positives = 158/335 (47%), Gaps = 56/335 (16%)

Query: 219 NVVISSSIVDAYAKCGELSDARRLFDETDA-RDVLTWTTMVSGYAKLGDMESASKLFNEM 277
           +VV  ++++  Y KCG + DARRLFD  DA +DV+TWT M+SGY +L  +E A +LF  M
Sbjct: 5   DVVTWTAVISGYIKCGLIVDARRLFDRVDAIKDVVTWTAMLSGYVRLKRIEEAERLFEVM 64

Query: 278 PEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGK 337
           P KN VSW T+I GY +N    KA+E+F RM       N  ++++ + A      ++  +
Sbjct: 65  PVKNVVSWNTMIDGYGKNREVDKAIEVFERMH----ERNMVSWNAVIAALVQCGRVEEAR 120

Query: 338 QVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKE----NSML------- 386
           +    + + +  S T ++  L    ++ G +++ R+VFD    +     N+M+       
Sbjct: 121 RRFDEMPKRDVISWTTMVMGL----ARSGRVDEARKVFDRMPERNVVSWNAMVTGYAKNM 176

Query: 387 -------------------WNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILN 427
                              WNTMI+   Q+G    A ++F++M   +V    ++   ++ 
Sbjct: 177 RLDEAFDLFERMPERNLSSWNTMITGFIQNGELAWARKVFNEMPEKNV----VSWTTMIT 232

Query: 428 ACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSD--------QLMNQLE 479
                G  +  L  F  M  D G  PN+      + +L    CSD        Q+   + 
Sbjct: 233 GYVQEGESESALKVFVEMIKDGGARPNE---GTFVNVL--GACSDMAGLGEGQQVHLLIS 287

Query: 480 KMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLI 514
           K  Y+  +++ +AL  +    G + + RK+ D ++
Sbjct: 288 KSVYQDRTFVASALLNMYSKCGELSIARKIFDDVV 322



 Score = 69.3 bits (168), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 51/183 (27%), Positives = 97/183 (53%), Gaps = 9/183 (4%)

Query: 28  ISKGQLSEAISS-LDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTP 86
           + +G+   A+   ++++   G R    T   +L  C++   L  G++VHL +  +  +  
Sbjct: 235 VQEGESESALKVFVEMIKDGGARPNEGTFVNVLGACSDMAGLGEGQQVHLLISKSVYQ-D 293

Query: 87  TTFLSNHLISMYFKCGSDVDARKVFDKIPV--KNLFSYNNMLSGYANLGMMKHARNLFDN 144
            TF+++ L++MY KCG    ARK+FD + +  ++L  +N M++ YA+ G    A  LF++
Sbjct: 294 RTFVASALLNMYSKCGELSIARKIFDDVVISQRDLVLWNGMIAAYAHHGCGMEAIELFED 353

Query: 145 MA----ERDVVSWNTMIIGYAKSGAVEEGLKFYKVL-RRFSISCNEFSFAGILTICVKLE 199
           M     + + VS+  ++   + +G V+EGL ++  L R  SI   E   A ++ +C +  
Sbjct: 354 MQGLGFKPNDVSYVELLSACSHAGLVDEGLNYFDELGRDNSIQLREDHHACLVDLCGRAG 413

Query: 200 ELK 202
            LK
Sbjct: 414 RLK 416


>gi|326532272|dbj|BAK05065.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 889

 Score =  344 bits (883), Expect = 8e-92,   Method: Compositional matrix adjust.
 Identities = 179/575 (31%), Positives = 316/575 (54%), Gaps = 39/575 (6%)

Query: 26  SLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKT 85
           +L   G+  EA+S    +  RG+RL + T    L  CA+  SL  GK++H          
Sbjct: 268 ALSQSGRAREALSVAVDMHNRGVRLDSTTYTSSLTACAKLSSLGWGKQLH---------- 317

Query: 86  PTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNM 145
                                  +V   +P  + +  + M+  YA  G  K AR +F ++
Sbjct: 318 ----------------------AQVIRSLPCIDPYVASAMVELYAKCGCFKEARRVFSSL 355

Query: 146 AERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTR 205
            +R+ VSW  +I G+ + G   E L+ +  +R   ++ ++F+ A I++ C    ++ L R
Sbjct: 356 RDRNTVSWTVLIGGFLQYGCFSESLELFNQMRAELMTVDQFALATIISGCSNRMDMCLAR 415

Query: 206 QVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLG 265
           Q+H   L +G    VVIS+S++  YAKCG L +A  +F   + RD+++WT M++ Y+++G
Sbjct: 416 QLHSLSLKSGHTRAVVISNSLISMYAKCGNLQNAESIFSSMEERDIVSWTGMLTAYSQVG 475

Query: 266 DMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILR-IRPNQHTFSSCL 324
           ++  A + F+ M  +N ++W  ++  Y ++G  +  L++++ M+  + + P+  T+ +  
Sbjct: 476 NIGKAREFFDGMSTRNVITWNAMLGAYIQHGAEEDGLKMYSAMLTEKDVIPDWVTYVTLF 535

Query: 325 CACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENS 384
             CA + + K G Q+ G  ++     +T VM+++I MYSKCG +++ R++FD    K+  
Sbjct: 536 RGCADMGANKLGDQITGHTVKVGLILDTSVMNAVITMYSKCGRISEARKIFDFLSRKD-L 594

Query: 385 MLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFES 444
           + WN MI+  +QHG  +QAI +F DM++   KPD I+   +L++C+HSGLVQEG  YF+ 
Sbjct: 595 VSWNAMITGYSQHGMGKQAIEIFDDMLKKGAKPDYISYVAVLSSCSHSGLVQEGKFYFDM 654

Query: 445 MTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNID 504
           +  D  + P  EH +C+++LLA+AG   +  N +++MP +  + +W AL   C+ HGN +
Sbjct: 655 LKRDHNVSPGLEHFSCMVDLLARAGNLIEAKNLIDEMPMKPTAEVWGALLSACKTHGNNE 714

Query: 505 MGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIE 564
           +       L D +   S  + LL+ IY+  GK     +VR+L+ ++  KK    SW+E++
Sbjct: 715 LAELAAKHLFDLDSPDSGGYMLLAKIYADAGKSVDSAQVRKLMRDKGIKKNPGYSWMEVK 774

Query: 565 NKVHAFSVSDSLHP----MRDVLYSVLEQLAGQMG 595
           NKVH F   D  HP    +R+ L  ++E++A Q+G
Sbjct: 775 NKVHVFKAEDVSHPQVIAIREKLDELMEKIA-QLG 808



 Score =  203 bits (517), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 110/347 (31%), Positives = 193/347 (55%), Gaps = 3/347 (0%)

Query: 87  TTFLSNHLISMYFKCGSDVDARKVF-DKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNM 145
             FL N L+  Y  CG+  DAR +    I   N+ ++N M++GYA LG +  A  LF  M
Sbjct: 62  AVFLQNTLLHAYLSCGALPDARGLLRGDITEPNVITHNIMMNGYAKLGSLSDAEELFGRM 121

Query: 146 AERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISC-NEFSFAGILTICVKLEELKLT 204
             RDV SWNT++ GY +SG   + ++ +  +RR   S  N F+F   +  C  L   ++ 
Sbjct: 122 PRRDVTSWNTLMSGYYQSGRFLDAMESFVSMRRSGDSLPNAFTFGCAMKSCGALGWHEVA 181

Query: 205 RQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKL 264
            Q+ G +   GF  +  +++ IVD + +CG +  A + F + +   V    +M++GYAK 
Sbjct: 182 LQLLGLLTKFGFQGDPDVATGIVDMFVRCGAVDFASKQFSQIERPTVFCRNSMLAGYAKS 241

Query: 265 GDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCL 324
             ++ A +LF  MPE++ VSW  +++  +++G  ++AL +   M    +R +  T++S L
Sbjct: 242 YGVDHALELFESMPERDVVSWNMMVSALSQSGRAREALSVAVDMHNRGVRLDSTTYTSSL 301

Query: 325 CACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENS 384
            ACA + SL  GKQ+H  +IR+    +  V S+++++Y+KCGC  + R+VF    ++ N+
Sbjct: 302 TACAKLSSLGWGKQLHAQVIRSLPCIDPYVASAMVELYAKCGCFKEARRVFSSLRDR-NT 360

Query: 385 MLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTH 431
           + W  +I    Q+G   +++ LF+ M    +  D+  LA I++ C++
Sbjct: 361 VSWTVLIGGFLQYGCFSESLELFNQMRAELMTVDQFALATIISGCSN 407



 Score =  172 bits (435), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 127/491 (25%), Positives = 227/491 (46%), Gaps = 49/491 (9%)

Query: 31  GQLSEAISSLDLLAQRGIRLP-AETLAFILQQCA----ESKSLKLGKRVHLHLKLTQRKT 85
           G+  +A+ S   + + G  LP A T    ++ C        +L+L   + L  K   +  
Sbjct: 140 GRFLDAMESFVSMRRSGDSLPNAFTFGCAMKSCGALGWHEVALQL---LGLLTKFGFQGD 196

Query: 86  PTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNM 145
           P   ++  ++ M+ +CG+   A K F +I    +F  N+ML+GYA    + HA  LF++M
Sbjct: 197 PD--VATGIVDMFVRCGAVDFASKQFSQIERPTVFCRNSMLAGYAKSYGVDHALELFESM 254

Query: 146 AERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTR 205
            ERDVVSWN M+   ++SG   E L     +    +  +  ++   LT C KL  L   +
Sbjct: 255 PERDVVSWNMMVSALSQSGRAREALSVAVDMHNRGVRLDSTTYTSSLTACAKLSSLGWGK 314

Query: 206 QVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLG 265
           Q+H QV+ +    +  ++S++V+ YAKCG   +ARR+F     R+ ++WT ++ G+ + G
Sbjct: 315 QLHAQVIRSLPCIDPYVASAMVELYAKCGCFKEARRVFSSLRDRNTVSWTVLIGGFLQYG 374

Query: 266 DMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLC 325
               + +LFN+M                         EL T         +Q   ++ + 
Sbjct: 375 CFSESLELFNQMRA-----------------------ELMT--------VDQFALATIIS 403

Query: 326 ACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSM 385
            C++ + +   +Q+H   +++      ++ +SLI MY+KCG L +   +F   + ++  +
Sbjct: 404 GCSNRMDMCLARQLHSLSLKSGHTRAVVISNSLISMYAKCGNLQNAESIFSSMEERD-IV 462

Query: 386 LWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESM 445
            W  M++A +Q G   +A   F  M   +V    IT   +L A    G  ++GL  + +M
Sbjct: 463 SWTGMLTAYSQVGNIGKAREFFDGMSTRNV----ITWNAMLGAYIQHGAEEDGLKMYSAM 518

Query: 446 THDLGIIPNQEHHACLIELLAQAGCS---DQLMNQLEKMPYEHDSYLWNALHGVCRIHGN 502
             +  +IP+   +  L    A  G +   DQ+     K+    D+ + NA+  +    G 
Sbjct: 519 LTEKDVIPDWVTYVTLFRGCADMGANKLGDQITGHTVKVGLILDTSVMNAVITMYSKCGR 578

Query: 503 IDMGRKVVDQL 513
           I   RK+ D L
Sbjct: 579 ISEARKIFDFL 589



 Score =  166 bits (421), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 100/395 (25%), Positives = 192/395 (48%), Gaps = 37/395 (9%)

Query: 11  NRKNLPNNCLIQSFLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKL 70
           +R  +    LI  FL     G  SE++   + +    + +    LA I+  C+    + L
Sbjct: 357 DRNTVSWTVLIGGFLQY---GCFSESLELFNQMRAELMTVDQFALATIISGCSNRMDMCL 413

Query: 71  GKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYA 130
            +++H  L L    T    +SN LISMY KCG+  +A  +F  +  +++ S+  ML+ Y+
Sbjct: 414 ARQLH-SLSLKSGHTRAVVISNSLISMYAKCGNLQNAESIFSSMEERDIVSWTGMLTAYS 472

Query: 131 NLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYK-VLRRFSISCNEFSFA 189
            +G +  AR  FD M+ R+V++WN M+  Y + GA E+GLK Y  +L    +  +  ++ 
Sbjct: 473 QVGNIGKAREFFDGMSTRNVITWNAMLGAYIQHGAEEDGLKMYSAMLTEKDVIPDWVTYV 532

Query: 190 GILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDAR 249
            +   C  +   KL  Q+ G  +  G + +  + ++++  Y+KCG +S+AR++FD    +
Sbjct: 533 TLFRGCADMGANKLGDQITGHTVKVGLILDTSVMNAVITMYSKCGRISEARKIFDFLSRK 592

Query: 250 DVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMM 309
           D+++W  M++GY                               +++G+G++A+E+F  M+
Sbjct: 593 DLVSWNAMITGY-------------------------------SQHGMGKQAIEIFDDML 621

Query: 310 ILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRT-NFRSNTIVMSSLIDMYSKCGCL 368
               +P+  ++ + L +C+    ++ GK     L R  N        S ++D+ ++ G L
Sbjct: 622 KKGAKPDYISYVAVLSSCSHSGLVQEGKFYFDMLKRDHNVSPGLEHFSCMVDLLARAGNL 681

Query: 369 NDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQA 403
            + + + D    K  + +W  ++SA   HG +E A
Sbjct: 682 IEAKNLIDEMPMKPTAEVWGALLSACKTHGNNELA 716


>gi|294463969|gb|ADE77505.1| unknown [Picea sitchensis]
          Length = 514

 Score =  343 bits (881), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 155/411 (37%), Positives = 257/411 (62%), Gaps = 1/411 (0%)

Query: 184 NEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLF 243
           N+F+ + ++  C  +  L+  +Q H  ++  GF S+VV+ +++V  YA+CG L DA  +F
Sbjct: 9   NQFTLSTVVKACASIASLEQGKQAHNYIIKMGFESDVVVQTALVHMYARCGSLEDAGHVF 68

Query: 244 DETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALE 303
           D+   R   TW  M++G+A+  DM+ A KLF EM E++ VSWT +IAGY +NG G ++L 
Sbjct: 69  DKMSERSTRTWNAMITGHAQNRDMKKALKLFYEMSERDVVSWTAVIAGYAQNGYGDESLN 128

Query: 304 LFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYS 363
           +F +M    ++ ++    S L ACA + +L+ G+Q H +++++ F  + +V S+L+DMY+
Sbjct: 129 VFNQMRKTGMKSDRFIMGSVLSACADLAALELGRQFHAYVVQSGFALDIVVGSALVDMYA 188

Query: 364 KCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLA 423
           K G + D  QVFD    + N + WN++I+   QHG    A+ LF  M+++ +KP++I+  
Sbjct: 189 KSGSMEDACQVFDKMPQR-NEVSWNSIITGCAQHGRGNDAVLLFEQMLQAGIKPNEISFV 247

Query: 424 VILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPY 483
            +L+AC+H+GLV EG  YF  MT + GI+P+  H+ C+I+LL +AGC D+  N +  MP 
Sbjct: 248 GVLSACSHTGLVNEGRGYFNLMTQNYGIVPDVSHYTCMIDLLGRAGCLDEAENFINGMPV 307

Query: 484 EHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKV 543
           E D  +W AL G CRIHGN ++ +++ + L+    Q +  + LLS+IY+A G+     KV
Sbjct: 308 EPDVSVWGALLGACRIHGNTELAKRIAEHLLGMEVQIAGIYVLLSNIYAAAGQWDDAAKV 367

Query: 544 RQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQM 594
           R+L+ +R   K+   SWIE++  +HAF   ++ HP    ++  LE L+ +M
Sbjct: 368 RKLMKDRGVMKQPGYSWIEVKTIMHAFVAGETSHPQLKEIHEFLESLSRKM 418



 Score =  176 bits (446), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 101/365 (27%), Positives = 183/365 (50%), Gaps = 33/365 (9%)

Query: 43  LAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCG 102
           +  +G++    TL+ +++ CA   SL+ GK+ H ++ +         +   L+ MY +CG
Sbjct: 1   MVGKGVKPNQFTLSTVVKACASIASLEQGKQAHNYI-IKMGFESDVVVQTALVHMYARCG 59

Query: 103 SDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAK 162
           S  DA  VFDK+  ++  ++N M++G+A    MK A  LF  M+ERDVVSW  +I GYA+
Sbjct: 60  SLEDAGHVFDKMSERSTRTWNAMITGHAQNRDMKKALKLFYEMSERDVVSWTAVIAGYAQ 119

Query: 163 SGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVI 222
           +G  +E L  +  +R+  +  + F    +L+ C  L  L+L RQ H  V+ +GF  ++V+
Sbjct: 120 NGYGDESLNVFNQMRKTGMKSDRFIMGSVLSACADLAALELGRQFHAYVVQSGFALDIVV 179

Query: 223 SSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNP 282
            S++VD YAK G + DA ++FD+   R+ ++W ++++G A+                   
Sbjct: 180 GSALVDMYAKSGSMEDACQVFDKMPQRNEVSWNSIITGCAQ------------------- 220

Query: 283 VSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGF 342
                       +G G  A+ LF +M+   I+PN+ +F   L AC+    +  G+     
Sbjct: 221 ------------HGRGNDAVLLFEQMLQAGIKPNEISFVGVLSACSHTGLVNEGRGYFNL 268

Query: 343 LIRT-NFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDE 401
           + +      +    + +ID+  + GCL++     +    + +  +W  ++ A   HG  E
Sbjct: 269 MTQNYGIVPDVSHYTCMIDLLGRAGCLDEAENFINGMPVEPDVSVWGALLGACRIHGNTE 328

Query: 402 QAIRL 406
            A R+
Sbjct: 329 LAKRI 333



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 63/249 (25%), Positives = 121/249 (48%), Gaps = 34/249 (13%)

Query: 313 IRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGR 372
           ++PNQ T S+ + ACASI SL+ GKQ H ++I+  F S+ +V ++L+ MY++CG L D  
Sbjct: 6   VKPNQFTLSTVVKACASIASLEQGKQAHNYIIKMGFESDVVVQTALVHMYARCGSLEDAG 65

Query: 373 QVFDLTDNKE----NSML--------------------------WNTMISALTQHGYDEQ 402
            VFD    +     N+M+                          W  +I+   Q+GY ++
Sbjct: 66  HVFDKMSERSTRTWNAMITGHAQNRDMKKALKLFYEMSERDVVSWTAVIAGYAQNGYGDE 125

Query: 403 AIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLI 462
           ++ +F+ M ++ +K D+  +  +L+AC     ++ G   F +     G   +    + L+
Sbjct: 126 SLNVFNQMRKTGMKSDRFIMGSVLSACADLAALELG-RQFHAYVVQSGFALDIVVGSALV 184

Query: 463 ELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQN--PQS 520
           ++ A++G  +      +KMP + +   WN++   C  HG  +    + +Q++     P  
Sbjct: 185 DMYAKSGSMEDACQVFDKMP-QRNEVSWNSIITGCAQHGRGNDAVLLFEQMLQAGIKPNE 243

Query: 521 SATHGLLSS 529
            +  G+LS+
Sbjct: 244 ISFVGVLSA 252



 Score = 62.0 bits (149), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 58/248 (23%), Positives = 108/248 (43%), Gaps = 40/248 (16%)

Query: 31  GQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFL 90
           G   E+++  + + + G++     +  +L  CA+  +L+LG++ H ++ +         +
Sbjct: 121 GYGDESLNVFNQMRKTGMKSDRFIMGSVLSACADLAALELGRQFHAYV-VQSGFALDIVV 179

Query: 91  SNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDV 150
            + L+ MY K GS  DA +VFDK+P +N  S+N++++G A  G    A  LF+ M     
Sbjct: 180 GSALVDMYAKSGSMEDACQVFDKMPQRNEVSWNSIITGCAQHGRGNDAVLLFEQM----- 234

Query: 151 VSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQ 210
                          ++ G+K            NE SF G+L+ C       L  +  G 
Sbjct: 235 ---------------LQAGIK-----------PNEISFVGVLSAC---SHTGLVNEGRGY 265

Query: 211 V-LVT---GFLSNVVISSSIVDAYAKCGELSDARRLFDETDAR-DVLTWTTMVSGYAKLG 265
             L+T   G + +V   + ++D   + G L +A    +      DV  W  ++      G
Sbjct: 266 FNLMTQNYGIVPDVSHYTCMIDLLGRAGCLDEAENFINGMPVEPDVSVWGALLGACRIHG 325

Query: 266 DMESASKL 273
           + E A ++
Sbjct: 326 NTELAKRI 333


>gi|359473818|ref|XP_002263197.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g13230, mitochondrial-like [Vitis vinifera]
          Length = 611

 Score =  343 bits (881), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 175/473 (36%), Positives = 277/473 (58%), Gaps = 33/473 (6%)

Query: 118 NLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLR 177
           +LF++N +L+ Y     +  A  LFD M ER+ +S+ T+I GYA+S    E ++ +  L 
Sbjct: 72  DLFAWNILLNMYVKSDFLCDASKLFDEMPERNTISFVTLIQGYAESVRFLEAIELFVRLH 131

Query: 178 RFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELS 237
           R  +  N+F+FA +L  C  +E L L  Q+H  V+  G  S+V +S++++D YAKC    
Sbjct: 132 R-EVLPNQFTFASVLQACATMEGLNLGNQIHCHVIKIGLHSDVFVSNALMDVYAKC---- 186

Query: 238 DARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGL 297
                                      G ME++ +LF E P +N V+W T+I G+ + G 
Sbjct: 187 ---------------------------GRMENSMELFAESPHRNDVTWNTVIVGHVQLGD 219

Query: 298 GQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSS 357
           G+KAL LF  M+  R++  + T+SS L ACAS+ +L+ G Q+H   ++T F  + +V ++
Sbjct: 220 GEKALRLFLNMLEYRVQATEVTYSSALRACASLAALEPGLQIHSLTVKTTFDKDIVVTNA 279

Query: 358 LIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKP 417
           LIDMY+KCG + D R VFDL  NK++ + WN MIS  + HG   +A+R+F  M  + VKP
Sbjct: 280 LIDMYAKCGSIKDARLVFDLM-NKQDEVSWNAMISGYSMHGLGREALRIFDKMQETEVKP 338

Query: 418 DKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQ 477
           DK+T   +L+AC ++GL+ +G  YF SM  D GI P  EH+ C++ LL + G  D+ +  
Sbjct: 339 DKLTFVGVLSACANAGLLDQGQAYFTSMIQDHGIEPCIEHYTCMVWLLGRGGHLDKAVKL 398

Query: 478 LEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKG 537
           ++++P++    +W AL G C IH +I++GR    ++++  PQ  ATH LLS++Y+   + 
Sbjct: 399 IDEIPFQPSVMVWRALLGACVIHNDIELGRISAQRVLEMEPQDKATHVLLSNMYATAKRW 458

Query: 538 RLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQL 590
             V  VR+ +  +  KKE  +SWIE +  VH+F+V D+ HP   V+  +LE L
Sbjct: 459 DNVASVRKNMKRKGVKKEPGLSWIESQGTVHSFTVGDTSHPEVRVINGMLEWL 511



 Score =  132 bits (333), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 93/382 (24%), Positives = 175/382 (45%), Gaps = 73/382 (19%)

Query: 23  SFLSLISKGQLSEAISSLDLLAQRGIRLPAE------TLAFILQQCAESKSLKLGKRVHL 76
           SF++LI     +E++  L+ + +  +RL  E      T A +LQ CA  + L LG ++H 
Sbjct: 106 SFVTLIQG--YAESVRFLEAI-ELFVRLHREVLPNQFTFASVLQACATMEGLNLGNQIHC 162

Query: 77  HLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMK 136
           H+ +        F+SN L+ +Y KC                               G M+
Sbjct: 163 HV-IKIGLHSDVFVSNALMDVYAKC-------------------------------GRME 190

Query: 137 HARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICV 196
           ++  LF     R+ V+WNT+I+G+ + G  E+ L+ +  +  + +   E +++  L  C 
Sbjct: 191 NSMELFAESPHRNDVTWNTVIVGHVQLGDGEKALRLFLNMLEYRVQATEVTYSSALRACA 250

Query: 197 KLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTT 256
            L  L+   Q+H   + T F  ++V++++++D YAKCG + DAR +FD  + +D ++W  
Sbjct: 251 SLAALEPGLQIHSLTVKTTFDKDIVVTNALIDMYAKCGSIKDARLVFDLMNKQDEVSWNA 310

Query: 257 MVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPN 316
           M+SGY                               + +GLG++AL +F +M    ++P+
Sbjct: 311 MISGY-------------------------------SMHGLGREALRIFDKMQETEVKPD 339

Query: 317 QHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIV-MSSLIDMYSKCGCLNDGRQVF 375
           + TF   L ACA+   L  G+     +I+ +     I   + ++ +  + G L+   ++ 
Sbjct: 340 KLTFVGVLSACANAGLLDQGQAYFTSMIQDHGIEPCIEHYTCMVWLLGRGGHLDKAVKLI 399

Query: 376 DLTDNKENSMLWNTMISALTQH 397
           D    + + M+W  ++ A   H
Sbjct: 400 DEIPFQPSVMVWRALLGACVIH 421



 Score =  121 bits (304), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 94/355 (26%), Positives = 167/355 (47%), Gaps = 43/355 (12%)

Query: 184 NEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLF 243
           N  ++A  L  C++ +E    + +H ++L  G   ++   + +++ Y K   L DA +LF
Sbjct: 37  NSHAYANALQDCIQKDEPSRGKGLHCEILKRGGCLDLFAWNILLNMYVKSDFLCDASKLF 96

Query: 244 DETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALE 303
           DE   R+ +++ T++ GYA     ES   L                          +A+E
Sbjct: 97  DEMPERNTISFVTLIQGYA-----ESVRFL--------------------------EAIE 125

Query: 304 LFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYS 363
           LF R+    + PNQ TF+S L ACA++  L  G Q+H  +I+    S+  V ++L+D+Y+
Sbjct: 126 LFVRLH-REVLPNQFTFASVLQACATMEGLNLGNQIHCHVIKIGLHSDVFVSNALMDVYA 184

Query: 364 KCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLA 423
           KCG + +  ++F  + ++ N + WNT+I    Q G  E+A+RLF +M+   V+  ++T +
Sbjct: 185 KCGRMENSMELFAESPHR-NDVTWNTVIVGHVQLGDGEKALRLFLNMLEYRVQATEVTYS 243

Query: 424 VILNACTHSGLVQEGLTYFE---SMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEK 480
             L AC     ++ GL         T D  I+        LI++ A+ G         + 
Sbjct: 244 SALRACASLAALEPGLQIHSLTVKTTFDKDIVVTN----ALIDMYAKCGSIKDARLVFDL 299

Query: 481 MPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQL--IDQNPQSSATHGLLSSIYSA 533
           M  + D   WNA+     +HG      ++ D++   +  P      G+LS+  +A
Sbjct: 300 MN-KQDEVSWNAMISGYSMHGLGREALRIFDKMQETEVKPDKLTFVGVLSACANA 353



 Score = 45.4 bits (106), Expect = 0.079,   Method: Compositional matrix adjust.
 Identities = 50/221 (22%), Positives = 98/221 (44%), Gaps = 19/221 (8%)

Query: 292 YTRNGLGQKALELFTRMMILRIRP---NQHTFSSCLCACASIVSLKHGKQVHGFLIRTNF 348
           ++R G   ++ +L T+  +  + P   N H +++ L  C        GK +H  +++   
Sbjct: 11  FSRRGFSVQSAKL-TQEFVGHVSPSEFNSHAYANALQDCIQKDEPSRGKGLHCEILKRGG 69

Query: 349 RSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFH 408
             +    + L++MY K   L D  ++FD    + N++ + T+I    +     +AI LF 
Sbjct: 70  CLDLFAWNILLNMYVKSDFLCDASKLFDEMPER-NTISFVTLIQGYAESVRFLEAIELFV 128

Query: 409 DMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESM---THDLGIIPNQEHHACLIELL 465
            + R  V P++ T A +L AC       EGL     +      +G+  +      L+++ 
Sbjct: 129 RLHR-EVLPNQFTFASVLQACA----TMEGLNLGNQIHCHVIKIGLHSDVFVSNALMDVY 183

Query: 466 AQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMG 506
           A+ G  +  M    + P+ +D   WN +     I G++ +G
Sbjct: 184 AKCGRMENSMELFAESPHRND-VTWNTV-----IVGHVQLG 218


>gi|356518777|ref|XP_003528054.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like [Glycine max]
          Length = 737

 Score =  343 bits (880), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 181/543 (33%), Positives = 299/543 (55%), Gaps = 47/543 (8%)

Query: 53  ETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFD 112
           E  +F++ +C  ++ +KL   VH HL  T       FL+N LI  Y KCG +  A K F 
Sbjct: 11  EKYSFLISKCITARRVKLANAVHGHLIKTALFF-DAFLANGLIDAYSKCGCEESAHKTFG 69

Query: 113 KIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKF 172
            +P K   S+N ++S Y+  G    A NLFD M +R+VVS+N++I G             
Sbjct: 70  DLPNKTTRSWNTLISFYSKTGFFDEAHNLFDKMPQRNVVSYNSLISG------------- 116

Query: 173 YKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAK 232
                                       L+  RQVHG  ++ G   NV+++++++DAY K
Sbjct: 117 ---------------------------NLQWLRQVHGVAVIVGMEWNVILNNALIDAYGK 149

Query: 233 CGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGY 292
           CGE + +  +F     R+V++WT+MV  Y +   ++ A ++F +MP KN VSWT L+ G+
Sbjct: 150 CGEPNLSFSVFCYMPERNVVSWTSMVVAYTRACRLDEACRVFKDMPVKNTVSWTALLTGF 209

Query: 293 TRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRS-- 350
            RNG   +A ++F +M+   +RP+  TF S + ACA    +  GKQVHG +IR +     
Sbjct: 210 VRNGGCDEAFDVFKQMLEEGVRPSAPTFVSVIDACAQEALIGRGKQVHGQIIRGDKSGNL 269

Query: 351 -NTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHD 409
            N  V ++LIDMY+KCG +     +F++   ++  + WNT+I+   Q+G+ E+++ +F  
Sbjct: 270 FNVYVCNALIDMYAKCGDMKSAENLFEMAPMRD-VVTWNTLITGFAQNGHGEESLAVFRR 328

Query: 410 MVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAG 469
           M+ + V+P+ +T   +L+ C H+GL  EGL   + M    G+ P  EH+A LI+LL +  
Sbjct: 329 MIEAKVEPNHVTFLGVLSGCNHAGLDNEGLQLVDLMERQYGVKPKAEHYALLIDLLGRRN 388

Query: 470 CSDQLMNQLEKMP--YEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLL 527
              + M+ +EK+P   ++   +W A+ G CR+HGN+D+ RK  ++L +  P+++  + +L
Sbjct: 389 RLMEAMSLIEKVPDGIKNHIAVWGAVLGACRVHGNLDLARKAAEKLFELEPENTGRYVML 448

Query: 528 SSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVL 587
           ++IY+A GK    +++R ++ ER  +KE A S IE+ N  H F   D  HP  + +  V 
Sbjct: 449 ANIYAASGKWGGAKRIRNVMKERCLEKEPACSRIELRNARHEFVAKDKFHPQVEEICEVN 508

Query: 588 EQL 590
            +L
Sbjct: 509 SKL 511



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 74/286 (25%), Positives = 131/286 (45%), Gaps = 48/286 (16%)

Query: 182 SCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARR 241
           S  ++SF  +++ C+    +KL   VHG ++ T    +  +++ ++DAY+KCG    A +
Sbjct: 9   SVEKYSF--LISKCITARRVKLANAVHGHLIKTALFFDAFLANGLIDAYSKCGCEESAHK 66

Query: 242 LFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKA 301
            F +   +   +W T++S Y+K G  + A  LF++MP++N VS+ +LI+G          
Sbjct: 67  TFGDLPNKTTRSWNTLISFYSKTGFFDEAHNLFDKMPQRNVVSYNSLISG---------- 116

Query: 302 LELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDM 361
                                         +L+  +QVHG  +      N I+ ++LID 
Sbjct: 117 ------------------------------NLQWLRQVHGVAVIVGMEWNVILNNALIDA 146

Query: 362 YSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKIT 421
           Y KCG  N    VF     + N + W +M+ A T+    ++A R+F DM    VK + ++
Sbjct: 147 YGKCGEPNLSFSVFCYMPER-NVVSWTSMVVAYTRACRLDEACRVFKDM---PVK-NTVS 201

Query: 422 LAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQ 467
              +L     +G   E    F+ M  + G+ P+      +I+  AQ
Sbjct: 202 WTALLTGFVRNGGCDEAFDVFKQMLEE-GVRPSAPTFVSVIDACAQ 246



 Score = 72.0 bits (175), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 57/268 (21%), Positives = 121/268 (45%), Gaps = 19/268 (7%)

Query: 27  LISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTP 86
            +  G   EA      + + G+R  A T   ++  CA+   +  GK+VH  +    +   
Sbjct: 209 FVRNGGCDEAFDVFKQMLEEGVRPSAPTFVSVIDACAQEALIGRGKQVHGQIIRGDKSGN 268

Query: 87  --TTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDN 144
               ++ N LI MY KCG    A  +F+  P++++ ++N +++G+A  G  + +  +F  
Sbjct: 269 LFNVYVCNALIDMYAKCGDMKSAENLFEMAPMRDVVTWNTLITGFAQNGHGEESLAVFRR 328

Query: 145 MAERDV----VSWNTMIIGYAKSGAVEEGLKFYKVL-RRFSISCNEFSFAGILTICVK-- 197
           M E  V    V++  ++ G   +G   EGL+   ++ R++ +      +A ++ +  +  
Sbjct: 329 MIEAKVEPNHVTFLGVLSGCNHAGLDNEGLQLVDLMERQYGVKPKAEHYALLIDLLGRRN 388

Query: 198 --LEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFD---ETDARDVL 252
             +E + L  +V       G  +++ +  +++ A    G L  AR+  +   E +  +  
Sbjct: 389 RLMEAMSLIEKV-----PDGIKNHIAVWGAVLGACRVHGNLDLARKAAEKLFELEPENTG 443

Query: 253 TWTTMVSGYAKLGDMESASKLFNEMPEK 280
            +  + + YA  G    A ++ N M E+
Sbjct: 444 RYVMLANIYAASGKWGGAKRIRNVMKER 471


>gi|188509964|gb|ACD56648.1| putative pentatricopeptide repeat protein [Gossypioides kirkii]
          Length = 805

 Score =  343 bits (879), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 204/661 (30%), Positives = 344/661 (52%), Gaps = 77/661 (11%)

Query: 8   RGINRKNLPNNCLIQSFLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKS 67
           R I+R+    N  I  F  L   G L  A+  L  + Q+   L  +T + +LQ CA SKS
Sbjct: 60  RTIDRQVTDYNAKILHFCQL---GNLENAME-LVCMCQKS-ELETKTYSSVLQLCAGSKS 114

Query: 68  LKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLS 127
           L  GK+VH  +K +        L   L+S+Y  CG   + R+VFD +  KN++ +N M+S
Sbjct: 115 LTDGKKVHSIIK-SNNVAVDEVLGLKLVSLYATCGDLKEGRRVFDTMEKKNVYLWNFMVS 173

Query: 128 GYANLGMMKH--------------------ARNLFDNMAERDVVSWNTMIIGYAKSGAVE 167
            YA +G  K                     A  LFD + +RDV+SWN+MI GY  +G  E
Sbjct: 174 EYAKIGDFKESICLFKIMVEKGIEGKRPESASELFDKLCDRDVISWNSMISGYVSNGLTE 233

Query: 168 EGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIV 227
            GL+ YK +    I  +  +   +L  C     L L + VH   + + F   +  S++++
Sbjct: 234 RGLEIYKQMMYLGIDVDLATIISVLVGCANSGTLSLGKAVHSLAIKSTFERRINFSNTLL 293

Query: 228 DAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMP--------- 278
           D Y+KCG+L  A R+F++   R+V++WT+M++GY + G  + A +L  +M          
Sbjct: 294 DMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGRSDGAIRLLQQMEKEGVKLDVV 353

Query: 279 ------------------------------EKNPVSWTTLIAGYTRNGLGQKALELFTRM 308
                                         E N      L+  YT+ G    A  +F+ M
Sbjct: 354 ATTSILHACARSGSLDNGKDVHDYIKANNMESNLFVCNALMDMYTKCGSMDGANSVFSTM 413

Query: 309 ----------MILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSL 358
                     MI  ++P+  T +  L ACAS+ +L+ GK++HG+++R  + S+  V ++L
Sbjct: 414 VVKDIISWNTMIGELKPDSRTMACILPACASLSALERGKEIHGYILRNGYSSDRHVANAL 473

Query: 359 IDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPD 418
           +D+Y KCG L   R +FD+  +K+  + W  MIS    HGY  +AI  F++M  + ++PD
Sbjct: 474 VDLYVKCGVLGLARLLFDMIPSKD-LVSWTVMISGYGMHGYGNEAIATFNEMRDAGIEPD 532

Query: 419 KITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQL 478
           +++   IL AC+HSGL+++G  +F  M +D  I P  EH+AC+++LL++ G   +    +
Sbjct: 533 EVSFISILYACSHSGLLEQGWRFFYIMKNDFNIEPKLEHYACMVDLLSRTGNLSKAYEFI 592

Query: 479 EKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGR 538
           E +P   D+ +W AL   CRI+ +I++  KV +++ +  P+++  + LL++IY+   K  
Sbjct: 593 ETLPIAPDATIWGALLCGCRIYHDIELAEKVAERVFELEPENTGYYVLLANIYAEAEKWE 652

Query: 539 LVEKVRQLINERQFKKEQAISWIEIENKVHAF-SVSDSLHPMRDVLYSVLEQLAGQMGED 597
            V+++R+ I ++  +K    SWIEI+ KV+ F S ++S HP    + S+L+++  +M E+
Sbjct: 653 EVKRMREKIGKKGLRKNPGCSWIEIKGKVNLFVSGNNSSHPHSKKIESLLKKMRRKMKEE 712

Query: 598 A 598
            
Sbjct: 713 G 713


>gi|224124974|ref|XP_002319471.1| predicted protein [Populus trichocarpa]
 gi|222857847|gb|EEE95394.1| predicted protein [Populus trichocarpa]
          Length = 703

 Score =  342 bits (878), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 198/595 (33%), Positives = 316/595 (53%), Gaps = 60/595 (10%)

Query: 59  LQQCAESKSLKLGK--RVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPV 116
           + QC  S   +LG+  R        Q KT T++  N +++ YF      +A+K+FDK+P 
Sbjct: 18  ITQCQISYFARLGQIDRARNIFDDLQSKTVTSW--NAIVAGYFHNKRPAEAQKLFDKMPE 75

Query: 117 KNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEG-LKFYKV 175
           +N  S+N ++SGY   GM+  AR +FD M ER+VVSW +M+ GY + G ++E  L F+++
Sbjct: 76  RNTISWNGLVSGYVKNGMISEARKVFDKMPERNVVSWTSMVRGYVQEGLIDEAELLFWRM 135

Query: 176 LRRFSISC----------NEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLS------- 218
             +  +S                A  L   + ++++  +  + G +   G LS       
Sbjct: 136 PEKNVVSWTVMLGGLIEDGRVDEARRLFDMIPVKDVVASTNMIGGLCSEGRLSEAREIFD 195

Query: 219 -----NVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKL 273
                NVV  +S++  YA   ++  AR+LF+    ++ +TWT M+ GY + G +  A++L
Sbjct: 196 EMPQRNVVAWTSMISGYAMNNKVDVARKLFEVMPDKNEVTWTAMLKGYTRSGRINEAAEL 255

Query: 274 FNEMP-------------------------------EKNPVSWTTLIAGYTRNGLGQKAL 302
           F  MP                               EK+  +W+ LI  Y R G   +AL
Sbjct: 256 FKAMPVKPVAACNGMIMGFGLNGEVGKARWVFDQMKEKDDGTWSALIKIYERKGFELEAL 315

Query: 303 ELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMY 362
            LF+ M    +RPN  +  S L  C S+ SL HG+QVH  L+R++F  +  V S LI MY
Sbjct: 316 ALFSLMQREGVRPNFPSIISILSVCGSLASLDHGRQVHSQLVRSHFDLDIYVSSVLITMY 375

Query: 363 SKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITL 422
            KCG L  G++VFD   +K+  M WN++I+   QHG+ E+A+ +FH+M  S   PD+IT 
Sbjct: 376 IKCGDLVTGKRVFDRFSSKDIVM-WNSIIAGYAQHGFGEKALEVFHEMFSSGAAPDEITF 434

Query: 423 AVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMP 482
             +L+AC ++G V+EGL  FESM     +    EH+AC+++LL +AG  ++ MN +E MP
Sbjct: 435 IGVLSACGYTGKVKEGLEIFESMKSKYQVDQKTEHYACMVDLLGRAGKLNEAMNLIENMP 494

Query: 483 YEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEK 542
            E D+ +W AL   CR H N+D+      +L+   P S+  + LLS++Y++  + + V +
Sbjct: 495 VEADAIVWGALLSACRTHKNLDLAEIAAKKLLQLEPSSAGPYILLSNLYASQSRWKDVAE 554

Query: 543 VRQLINERQFKKEQAISWIEIENKVHAFSVSDSL-HPMRDVLYSVLEQLAGQMGE 596
           +R+ +  R   K    SWIE++NKVH F+   S  HP  +++   LE+L   + E
Sbjct: 555 LRKTMRARNVSKSPGCSWIEVDNKVHMFTGGGSASHPEHEMIMKKLEKLGASLRE 609



 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 91/372 (24%), Positives = 176/372 (47%), Gaps = 41/372 (11%)

Query: 27  LISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTP 86
           L S+G+LSEA    D + QR +         ++   A +  + + +++    ++   K  
Sbjct: 181 LCSEGRLSEAREIFDEMPQRNV----VAWTSMISGYAMNNKVDVARKL---FEVMPDKNE 233

Query: 87  TTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMA 146
            T+ +  ++  Y + G   +A ++F  +PVK + + N M+ G+   G +  AR +FD M 
Sbjct: 234 VTWTA--MLKGYTRSGRINEAAELFKAMPVKPVAACNGMIMGFGLNGEVGKARWVFDQMK 291

Query: 147 ERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQ 206
           E+D  +W+ +I  Y + G   E L  + +++R  +  N  S   IL++C  L  L   RQ
Sbjct: 292 EKDDGTWSALIKIYERKGFELEALALFSLMQREGVRPNFPSIISILSVCGSLASLDHGRQ 351

Query: 207 VHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGD 266
           VH Q++ + F  ++ +SS ++  Y KCG+L   +R+FD   ++D++ W ++++GYA+   
Sbjct: 352 VHSQLVRSHFDLDIYVSSVLITMYIKCGDLVTGKRVFDRFSSKDIVMWNSIIAGYAQ--- 408

Query: 267 MESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCA 326
                                       +G G+KALE+F  M      P++ TF   L A
Sbjct: 409 ----------------------------HGFGEKALEVFHEMFSSGAAPDEITFIGVLSA 440

Query: 327 CASIVSLKHGKQV-HGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSM 385
           C     +K G ++      +      T   + ++D+  + G LN+   + +    + +++
Sbjct: 441 CGYTGKVKEGLEIFESMKSKYQVDQKTEHYACMVDLLGRAGKLNEAMNLIENMPVEADAI 500

Query: 386 LWNTMISALTQH 397
           +W  ++SA   H
Sbjct: 501 VWGALLSACRTH 512



 Score = 92.0 bits (227), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 76/312 (24%), Positives = 138/312 (44%), Gaps = 56/312 (17%)

Query: 216 FLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFN 275
           F S+  I+   +  +A+ G++  AR +FD+  ++ V +W  +V+GY        A KLF+
Sbjct: 12  FSSSAAITQCQISYFARLGQIDRARNIFDDLQSKTVTSWNAIVAGYFHNKRPAEAQKLFD 71

Query: 276 EMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKH 335
           +MPE+N +SW  L++GY +NG+  +A ++F +M       N  +++S +        +  
Sbjct: 72  KMPERNTISWNGLVSGYVKNGMISEARKVFDKM----PERNVVSWTSMVRGYVQEGLIDE 127

Query: 336 GKQVHGFLIRTNFRSNTIVMSSLID-------------------------MYSKC--GCL 368
            + +   +   N  S T+++  LI+                         +   C  G L
Sbjct: 128 AELLFWRMPEKNVVSWTVMLGGLIEDGRVDEARRLFDMIPVKDVVASTNMIGGLCSEGRL 187

Query: 369 NDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDK--ITLAVIL 426
           ++ R++FD    + N + W +MIS    +   + A +LF       V PDK  +T   +L
Sbjct: 188 SEAREIFDEMPQR-NVVAWTSMISGYAMNNKVDVARKLFE------VMPDKNEVTWTAML 240

Query: 427 NACTHSGLVQEGLTYFESMTHDLGIIPNQEHHAC-----LIELLAQAGCSDQLMNQLEKM 481
              T SG + E    F++M       P +   AC        L  + G +  + +Q++  
Sbjct: 241 KGYTRSGRINEAAELFKAM-------PVKPVAACNGMIMGFGLNGEVGKARWVFDQMK-- 291

Query: 482 PYEHDSYLWNAL 493
             E D   W+AL
Sbjct: 292 --EKDDGTWSAL 301


>gi|449455158|ref|XP_004145320.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
 gi|449470513|ref|XP_004152961.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
 gi|449523079|ref|XP_004168552.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
          Length = 733

 Score =  342 bits (877), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 186/579 (32%), Positives = 315/579 (54%), Gaps = 38/579 (6%)

Query: 18  NCLIQSFLSLISKGQLSEAISSLDLLAQRGIRLPAE-TLAFILQQCAESKSLKLGKRVHL 76
           N LI+++ S  S       +  LDLL  +   LP + T  F+++  +E K+ ++G  VH 
Sbjct: 94  NTLIRAYAS--SSDPFQSFVIFLDLL-DKCEDLPNKFTFPFVIKAASELKASRVGTAVH- 149

Query: 77  HLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMK 136
                               M  K    +D            L+  N+++  Y   G + 
Sbjct: 150 -------------------GMAIKLSFGMD------------LYILNSLVRFYGACGDLS 178

Query: 137 HARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICV 196
            A  LF  ++ +DVVSWN+MI  +A+    E+ L+ +  + R ++  N  +  G+L+ C 
Sbjct: 179 MAERLFKGISCKDVVSWNSMISAFAQGNCPEDALELFLKMERENVMPNSVTMVGVLSACA 238

Query: 197 KLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTT 256
           K  +L+  R V   +   G   ++ + ++++D Y KCG + DA++LFDE   RDV +WT 
Sbjct: 239 KKLDLEFGRWVCSYIERKGIKVDLTLCNAMLDMYTKCGSVDDAQKLFDEMPERDVFSWTI 298

Query: 257 MVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRI-RP 315
           M+ GYAK+GD ++A  +FN MP K   +W  LI+ Y +NG  ++AL +F  + + +I +P
Sbjct: 299 MLDGYAKMGDYDAARLVFNAMPVKEIAAWNVLISAYEQNGKPKEALAIFNELQLSKIAKP 358

Query: 316 NQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVF 375
           ++ T  S L ACA + ++  G  +H ++ R     N  ++SSL+DMY+KCG L    +VF
Sbjct: 359 DEVTLVSTLSACAQLGAIDLGGWIHVYIKREGIVLNCHLISSLVDMYAKCGSLEKALEVF 418

Query: 376 DLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLV 435
              + ++   +W+ MI+ L  HG  + AI LF +M  + VKP+ +T   +L AC+H+GLV
Sbjct: 419 YSVEERD-VYVWSAMIAGLGMHGRGKAAIDLFFEMQEAKVKPNSVTFTNVLCACSHAGLV 477

Query: 436 QEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHG 495
            EG  +F  M    G++P  +H+AC++++L +AG  ++ M  + +M     + +W AL G
Sbjct: 478 DEGRVFFHEMEPVYGVVPEMKHYACMVDILGRAGFLEEAMELINEMSTTPSASVWGALLG 537

Query: 496 VCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKE 555
            C +H N+++G    DQL+   P++     LLS+IY+  G+   V ++R+L+ + + KKE
Sbjct: 538 ACSLHMNVELGELASDQLLKLEPRNHGAIVLLSNIYAKTGRWEKVSELRKLMRDTELKKE 597

Query: 556 QAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQM 594
              S IE    VH F V D+ HP+   +YS LE++A ++
Sbjct: 598 PGCSSIEANGNVHEFLVGDNTHPLSSNIYSKLEEIATKL 636



 Score =  165 bits (417), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 125/506 (24%), Positives = 230/506 (45%), Gaps = 83/506 (16%)

Query: 89  FLSNHLISMYFKCGS-----DVDARKV-----FDKIPVKNLFSYNNMLSGYANLGMMKHA 138
           F ++ ++S   KC S     +V AR +     FD      LF+     S  ++   + +A
Sbjct: 23  FRNHQILSTIDKCSSSKQLKEVHARMLRTGLFFDPFSASKLFT----ASALSSFSTLDYA 78

Query: 139 RNLFDNMAERDVVSWNTMIIGYAKSG-AVEEGLKFYKVLRRFSISCNEFSFAGILTICVK 197
           RNLFD + + ++ +WNT+I  YA S    +  + F  +L +     N+F+F  ++    +
Sbjct: 79  RNLFDQIPQPNLYTWNTLIRAYASSSDPFQSFVIFLDLLDKCEDLPNKFTFPFVIKAASE 138

Query: 198 LEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTM 257
           L+  ++   VHG  +   F  ++ I +S+V  Y  CG+LS A RLF     +DV++W +M
Sbjct: 139 LKASRVGTAVHGMAIKLSFGMDLYILNSLVRFYGACGDLSMAERLFKGISCKDVVSWNSM 198

Query: 258 VSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQ 317
           +S +A+              PE                     ALELF +M    + PN 
Sbjct: 199 ISAFAQ-----------GNCPE--------------------DALELFLKMERENVMPNS 227

Query: 318 HTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDL 377
            T    L ACA  + L+ G+ V  ++ R   + +  + ++++DMY+KCG ++D +++FD 
Sbjct: 228 VTMVGVLSACAKKLDLEFGRWVCSYIERKGIKVDLTLCNAMLDMYTKCGSVDDAQKLFDE 287

Query: 378 TDNKE------------------------NSM------LWNTMISALTQHGYDEQAIRLF 407
              ++                        N+M       WN +ISA  Q+G  ++A+ +F
Sbjct: 288 MPERDVFSWTIMLDGYAKMGDYDAARLVFNAMPVKEIAAWNVLISAYEQNGKPKEALAIF 347

Query: 408 HDMVRSSV-KPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLA 466
           +++  S + KPD++TL   L+AC   G +  G  +        GI+ N    + L+++ A
Sbjct: 348 NELQLSKIAKPDEVTLVSTLSACAQLGAIDLG-GWIHVYIKREGIVLNCHLISSLVDMYA 406

Query: 467 QAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLID-QNPQSSATHG 525
           + G  ++ +     +  E D Y+W+A+     +HG    G+  +D   + Q  +      
Sbjct: 407 KCGSLEKALEVFYSVE-ERDVYVWSAMIAGLGMHGR---GKAAIDLFFEMQEAKVKPNSV 462

Query: 526 LLSSIYSALGKGRLVEKVRQLINERQ 551
             +++  A     LV++ R   +E +
Sbjct: 463 TFTNVLCACSHAGLVDEGRVFFHEME 488


>gi|297743088|emb|CBI35955.3| unnamed protein product [Vitis vinifera]
          Length = 708

 Score =  342 bits (877), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 185/592 (31%), Positives = 323/592 (54%), Gaps = 16/592 (2%)

Query: 28  ISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPT 87
           ++ G   EA+     + + G+     T   +++ CA   S KL + VH H+ +       
Sbjct: 111 VAHGYCEEALEIYCRMRKLGVSADGFTFPLVIRACALMGSRKLCRSVHGHV-VEMGFQWN 169

Query: 88  TFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMA- 146
             + N L+ MY K G   DARKVF+++ V++  S+N M+SGYA       A  +F  M  
Sbjct: 170 LHVGNELMGMYGKIGRMDDARKVFERMAVRSCVSWNTMVSGYALNYDCHGASEMFRMMGS 229

Query: 147 ---ERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKL 203
              E ++V+W +++  +A+ G   E ++ +  +R   I     + A +L++ V L     
Sbjct: 230 AGLEPNLVTWTSLLSSHARCGQHVETMELFGRMRMRGIGATAEALAVVLSVSVDLAAFDE 289

Query: 204 TRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAK 263
            + +HG V+  GF + + + +S++  Y K G ++ AR LF E   +++++W  ++S YA 
Sbjct: 290 GKVIHGYVVKGGFENYLFVKNSLICLYGKHGNVNAARILFLEIKTKNIVSWNALISSYAD 349

Query: 264 LGDMESASKLF------NEMPEKNP--VSWTTLIAGYTRNGLGQKALELFTRMMILRIRP 315
           LG  + A  +F      +E P   P  VSW+ +I G+   G G++ALELF RM + +++ 
Sbjct: 350 LGWCDEAFAIFLQLEKTDEYPMVRPNVVSWSAVIGGFASKGQGEEALELFRRMQLAKVKA 409

Query: 316 NQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVF 375
           N  T +S L  CA + +L  G+++HG ++R+    N +V + LI+MY+K G   +G  VF
Sbjct: 410 NSVTIASVLSVCAELAALHLGREIHGHVVRSLMDGNILVGNGLINMYTKSGSFKEGNLVF 469

Query: 376 DLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLV 435
           +  +NK+  + WNTM++    HG  E AIR F  M++   +PD +T   +L+AC+H+GLV
Sbjct: 470 EKIENKD-LISWNTMVAGYGIHGLGENAIRTFDQMIKDGFEPDGVTFVAVLSACSHAGLV 528

Query: 436 QEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHG 495
            EG   F+ M  +  + P  EH+AC+++LL +AG   +    ++ MP E ++ +W AL  
Sbjct: 529 AEGRELFDKMIKEFRVEPQMEHYACMVDLLGRAGLLQEASKVVKSMPVEPNACVWGALLN 588

Query: 496 VCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKE 555
            CR+H N ++  +   Q+ + N + + ++ LLS+IY+A G+     KVR     +  KK 
Sbjct: 589 SCRMHKNTEVAEETASQIFNLNSEIAGSYMLLSNIYAASGRWEDSAKVRISAKTKGLKKT 648

Query: 556 QAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQMGEDA--PSLDADR 605
              SWI+++ KV+ FS  ++ H   + +Y +L+ L  QM  +   P +D ++
Sbjct: 649 PGQSWIQVKKKVYMFSAGNTQHAELEEVYRILKDLGLQMEVEGYIPDIDEEQ 700



 Score =  177 bits (450), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 109/396 (27%), Positives = 196/396 (49%), Gaps = 41/396 (10%)

Query: 58  ILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVK 117
           +LQQC++S    L +++H  + +T     + FL+  ++S+Y   G   DA++VF+  P++
Sbjct: 40  LLQQCSKSH---LSQQIHSQIIVTGSHR-SAFLAARVVSVYAGFGLVSDAQRVFEVSPIE 95

Query: 118 NLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLR 177
               ++N+L                          WN+++      G  EE L+ Y  +R
Sbjct: 96  ---CFSNLLL-------------------------WNSILRANVAHGYCEEALEIYCRMR 127

Query: 178 RFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELS 237
           +  +S + F+F  ++  C  +   KL R VHG V+  GF  N+ + + ++  Y K G + 
Sbjct: 128 KLGVSADGFTFPLVIRACALMGSRKLCRSVHGHVVEMGFQWNLHVGNELMGMYGKIGRMD 187

Query: 238 DARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMP----EKNPVSWTTLIAGYT 293
           DAR++F+    R  ++W TMVSGYA   D   AS++F  M     E N V+WT+L++ + 
Sbjct: 188 DARKVFERMAVRSCVSWNTMVSGYALNYDCHGASEMFRMMGSAGLEPNLVTWTSLLSSHA 247

Query: 294 RNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTI 353
           R G   + +ELF RM +  I       +  L     + +   GK +HG++++  F +   
Sbjct: 248 RCGQHVETMELFGRMRMRGIGATAEALAVVLSVSVDLAAFDEGKVIHGYVVKGGFENYLF 307

Query: 354 VMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRS 413
           V +SLI +Y K G +N  R +F L    +N + WN +IS+    G+ ++A  +F  + ++
Sbjct: 308 VKNSLICLYGKHGNVNAARILF-LEIKTKNIVSWNALISSYADLGWCDEAFAIFLQLEKT 366

Query: 414 S----VKPDKITLAVILNACTHSGLVQEGLTYFESM 445
                V+P+ ++ + ++      G  +E L  F  M
Sbjct: 367 DEYPMVRPNVVSWSAVIGGFASKGQGEEALELFRRM 402



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 87/337 (25%), Positives = 162/337 (48%), Gaps = 38/337 (11%)

Query: 203 LTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYA 262
           L++Q+H Q++VTG   +  +++ +V  YA  G +SDA+R+F+                  
Sbjct: 49  LSQQIHSQIIVTGSHRSAFLAARVVSVYAGFGLVSDAQRVFE------------------ 90

Query: 263 KLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSS 322
            +  +E  S L         + W +++     +G  ++ALE++ RM  L +  +  TF  
Sbjct: 91  -VSPIECFSNL---------LLWNSILRANVAHGYCEEALEIYCRMRKLGVSADGFTFPL 140

Query: 323 CLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKE 382
            + ACA + S K  + VHG ++   F+ N  V + L+ MY K G ++D R+VF+    + 
Sbjct: 141 VIRACALMGSRKLCRSVHGHVVEMGFQWNLHVGNELMGMYGKIGRMDDARKVFERMAVR- 199

Query: 383 NSMLWNTMISALTQHGYD-EQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTY 441
           + + WNTM+S    + YD   A  +F  M  + ++P+ +T   +L++    G   E +  
Sbjct: 200 SCVSWNTMVSGYALN-YDCHGASEMFRMMGSAGLEPNLVTWTSLLSSHARCGQHVETMEL 258

Query: 442 FESMTHDLGIIPNQEHHACLIELLAQAGCSDQ---LMNQLEKMPYEHDSYLWNALHGVCR 498
           F  M    GI    E  A ++ +       D+   +   + K  +E+  ++ N+L  +  
Sbjct: 259 FGRMRMR-GIGATAEALAVVLSVSVDLAAFDEGKVIHGYVVKGGFENYLFVKNSLICLYG 317

Query: 499 IHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALG 535
            HGN++  R +  ++  +N  S   + L+SS Y+ LG
Sbjct: 318 KHGNVNAARILFLEIKTKNIVS--WNALISS-YADLG 351


>gi|225434622|ref|XP_002279360.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 743

 Score =  342 bits (877), Expect = 4e-91,   Method: Compositional matrix adjust.
 Identities = 164/478 (34%), Positives = 280/478 (58%), Gaps = 2/478 (0%)

Query: 118 NLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLR 177
           ++F  N+++  YA  G +     +F N+  RDVVSWN+MI  + + G  EE L+ ++ + 
Sbjct: 170 DVFILNSLIHFYAKCGELGLGYRVFVNIPRRDVVSWNSMITAFVQGGCPEEALELFQEME 229

Query: 178 RFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELS 237
             ++  N  +  G+L+ C K  + +  R VH  +       ++ +S++++D Y KCG + 
Sbjct: 230 TQNVKPNGITMVGVLSACAKKSDFEFGRWVHSYIERNRIGESLTLSNAMLDMYTKCGSVE 289

Query: 238 DARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGL 297
           DA+RLFD+   +D+++WTTM+ GYAK+G+ ++A  +F+ MP ++  +W  LI+ Y + G 
Sbjct: 290 DAKRLFDKMPEKDIVSWTTMLVGYAKIGEYDAAQGIFDAMPNQDIAAWNALISAYEQCGK 349

Query: 298 GQKALELFTRMMILRI-RPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMS 356
            ++ALELF  + + +  +P++ T  S L ACA + ++  G  +H ++ +   + N  + +
Sbjct: 350 PKEALELFHELQLSKTAKPDEVTLVSTLSACAQLGAMDLGGWIHVYIKKQGMKLNCHLTT 409

Query: 357 SLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVK 416
           SLIDMY KCG L     VF   + K +  +W+ MI+ L  HG+ + AI LF  M    VK
Sbjct: 410 SLIDMYCKCGDLQKALMVFHSVERK-DVFVWSAMIAGLAMHGHGKDAIALFSKMQEDKVK 468

Query: 417 PDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMN 476
           P+ +T   IL AC+H GLV+EG T+F  M    G++P  +H+AC++++L +AG  ++ + 
Sbjct: 469 PNAVTFTNILCACSHVGLVEEGRTFFNQMELVYGVLPGVKHYACMVDILGRAGLLEEAVE 528

Query: 477 QLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGK 536
            +EKMP    + +W AL G C IH N+ +  +   QLI+  P +   + LLS+IY+  GK
Sbjct: 529 LIEKMPMAPAASVWGALLGACTIHENVVLAEQACSQLIELEPGNHGAYVLLSNIYAKAGK 588

Query: 537 GRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQM 594
              V  +R+L+ +   KKE   S IE++  VH F V D+ HP    +Y+ L+++  ++
Sbjct: 589 WDRVSGLRKLMRDVGLKKEPGCSSIEVDGIVHEFLVGDNSHPSAKKIYAKLDEIVARL 646



 Score =  164 bits (416), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 99/390 (25%), Positives = 183/390 (46%), Gaps = 53/390 (13%)

Query: 18  NCLIQSFLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLH 77
           N +I +F   +  G   EA+     +  + ++    T+  +L  CA+    + G+ VH +
Sbjct: 206 NSMITAF---VQGGCPEEALELFQEMETQNVKPNGITMVGVLSACAKKSDFEFGRWVHSY 262

Query: 78  LKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKH 137
           ++   R   +  LSN ++ MY KCGS  DA+++FDK+P K++ S+  ML GYA +G    
Sbjct: 263 IE-RNRIGESLTLSNAMLDMYTKCGSVEDAKRLFDKMPEKDIVSWTTMLVGYAKIGEYDA 321

Query: 138 ARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLR-RFSISCNEFSFAGILTICV 196
           A+ +FD M  +D+ +WN +I  Y + G  +E L+ +  L+   +   +E +    L+ C 
Sbjct: 322 AQGIFDAMPNQDIAAWNALISAYEQCGKPKEALELFHELQLSKTAKPDEVTLVSTLSACA 381

Query: 197 KLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTT 256
           +L  + L   +H  +   G   N  +++S++D Y KCG+L  A  +F   + +DV  W+ 
Sbjct: 382 QLGAMDLGGWIHVYIKKQGMKLNCHLTTSLIDMYCKCGDLQKALMVFHSVERKDVFVWSA 441

Query: 257 MVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPN 316
           M++G A  G  + A  LF++M E                                +++PN
Sbjct: 442 MIAGLAMHGHGKDAIALFSKMQED-------------------------------KVKPN 470

Query: 317 QHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIV---------MSSLIDMYSKCGC 367
             TF++ LCAC+ +  ++ G        RT F    +V          + ++D+  + G 
Sbjct: 471 AVTFTNILCACSHVGLVEEG--------RTFFNQMELVYGVLPGVKHYACMVDILGRAGL 522

Query: 368 LNDGRQVFDLTDNKENSMLWNTMISALTQH 397
           L +  ++ +       + +W  ++ A T H
Sbjct: 523 LEEAVELIEKMPMAPAASVWGALLGACTIH 552



 Score =  152 bits (383), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 110/450 (24%), Positives = 202/450 (44%), Gaps = 67/450 (14%)

Query: 135 MKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLK-FYKVLRRFSISCNEFSFAGILT 193
           + +A+ +FD +   ++ +WNT+I  YA S    + L  F ++L +     ++F+F  ++ 
Sbjct: 85  LDYAQQVFDQIPHPNLYTWNTLIRAYASSSNPHQSLLIFLRMLHQSPDFPDKFTFPFLIK 144

Query: 194 ICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLT 253
              +LEEL   +  HG V+     S+V I +S++  YAKCGEL    R+F     RDV++
Sbjct: 145 AASELEELFTGKAFHGMVIKVLLGSDVFILNSLIHFYAKCGELGLGYRVFVNIPRRDVVS 204

Query: 254 WTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRI 313
           W +M++ + + G  E A +LF EM  +N                               +
Sbjct: 205 WNSMITAFVQGGCPEEALELFQEMETQN-------------------------------V 233

Query: 314 RPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQ 373
           +PN  T    L ACA     + G+ VH ++ R     +  + ++++DMY+KCG + D ++
Sbjct: 234 KPNGITMVGVLSACAKKSDFEFGRWVHSYIERNRIGESLTLSNAMLDMYTKCGSVEDAKR 293

Query: 374 VFDLTDNKE----NSML--------------------------WNTMISALTQHGYDEQA 403
           +FD    K+     +ML                          WN +ISA  Q G  ++A
Sbjct: 294 LFDKMPEKDIVSWTTMLVGYAKIGEYDAAQGIFDAMPNQDIAAWNALISAYEQCGKPKEA 353

Query: 404 IRLFHDM-VRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLI 462
           + LFH++ +  + KPD++TL   L+AC   G +  G  +        G+  N      LI
Sbjct: 354 LELFHELQLSKTAKPDEVTLVSTLSACAQLGAMDLG-GWIHVYIKKQGMKLNCHLTTSLI 412

Query: 463 ELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSA 522
           ++  + G   + +     +  + D ++W+A+     +HG+      +  ++ +   + +A
Sbjct: 413 DMYCKCGDLQKALMVFHSVERK-DVFVWSAMIAGLAMHGHGKDAIALFSKMQEDKVKPNA 471

Query: 523 THGLLSSIYSALGKGRLVEKVRQLINERQF 552
                ++I  A     LVE+ R   N+ + 
Sbjct: 472 V--TFTNILCACSHVGLVEEGRTFFNQMEL 499



 Score =  112 bits (281), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 97/373 (26%), Positives = 167/373 (44%), Gaps = 45/373 (12%)

Query: 186 FSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYA--KCGELSDARRLF 243
           F+    L++  +  E K  +Q+H Q+L TG   +   +S ++ A A      L  A+++F
Sbjct: 33  FANHPTLSLIDQCSETKQLKQIHAQMLRTGLFFDPFSASRLITAAALSPFPSLDYAQQVF 92

Query: 244 DETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALE 303
           D+    ++ TW T++  YA                  NP                 ++L 
Sbjct: 93  DQIPHPNLYTWNTLIRAYAS---------------SSNP----------------HQSLL 121

Query: 304 LFTRMMILRIR-PNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMY 362
           +F RM+      P++ TF   + A + +  L  GK  HG +I+    S+  +++SLI  Y
Sbjct: 122 IFLRMLHQSPDFPDKFTFPFLIKAASELEELFTGKAFHGMVIKVLLGSDVFILNSLIHFY 181

Query: 363 SKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITL 422
           +KCG L  G +VF +   + + + WN+MI+A  Q G  E+A+ LF +M   +VKP+ IT+
Sbjct: 182 AKCGELGLGYRVF-VNIPRRDVVSWNSMITAFVQGGCPEEALELFQEMETQNVKPNGITM 240

Query: 423 AVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMP 482
             +L+AC      + G  +  S      I  +      ++++  + G  +      +KMP
Sbjct: 241 VGVLSACAKKSDFEFG-RWVHSYIERNRIGESLTLSNAMLDMYTKCGSVEDAKRLFDKMP 299

Query: 483 YEHDSYLWNA-LHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVE 541
            E D   W   L G  +I G  D  + + D + +Q+    A    L S Y   GK +   
Sbjct: 300 -EKDIVSWTTMLVGYAKI-GEYDAAQGIFDAMPNQD---IAAWNALISAYEQCGKPK--- 351

Query: 542 KVRQLINERQFKK 554
           +  +L +E Q  K
Sbjct: 352 EALELFHELQLSK 364


>gi|147856499|emb|CAN78640.1| hypothetical protein VITISV_031739 [Vitis vinifera]
          Length = 954

 Score =  342 bits (876), Expect = 4e-91,   Method: Compositional matrix adjust.
 Identities = 185/592 (31%), Positives = 323/592 (54%), Gaps = 16/592 (2%)

Query: 28  ISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPT 87
           ++ G   EA+     + + G+     T   +++ CA   S KL + VH H+ +       
Sbjct: 111 VAHGYCEEALEIYCRMRKLGVSADGFTFPLVIRACALMGSRKLCRSVHGHV-VEMGFQWN 169

Query: 88  TFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMA- 146
             + N L+ MY K G   DARKVF+++ V++  S+N M+SGYA       A  +F  M  
Sbjct: 170 LHVGNELMGMYGKIGRMDDARKVFERMAVRSCVSWNTMVSGYALNYDCHGASEMFRMMGS 229

Query: 147 ---ERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKL 203
              E ++V+W +++  +A+ G   E ++ +  +R   I     + A +L++ V L     
Sbjct: 230 AGLEPNLVTWTSLLSSHARCGQHVETMELFGRMRMRGIGATAEALAVVLSVSVDLAAFDE 289

Query: 204 TRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAK 263
            + +HG V+  GF + + + +S++  Y K G ++ AR LF E   +++++W  ++S YA 
Sbjct: 290 GKVIHGYVVKGGFENYLFVKNSLICLYGKHGNVNAARILFLEIKTKNIVSWNALISSYAD 349

Query: 264 LGDMESASKLF------NEMPEKNP--VSWTTLIAGYTRNGLGQKALELFTRMMILRIRP 315
           LG  + A  +F      +E P   P  VSW+ +I G+   G G++ALELF RM + +++ 
Sbjct: 350 LGWCDEAFAIFLQLEKTDEYPMVRPNVVSWSAVIGGFASKGQGEEALELFRRMQLAKVKA 409

Query: 316 NQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVF 375
           N  T +S L  CA + +L  G+++HG ++R+    N +V + LI+MY+K G   +G  VF
Sbjct: 410 NSVTIASVLSVCAELAALHLGREIHGHVVRSLMDGNILVGNGLINMYTKSGSFKEGNLVF 469

Query: 376 DLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLV 435
           +  +NK+  + WNTM++    HG  E AIR F  M++   +PD +T   +L+AC+H+GLV
Sbjct: 470 EKIENKD-LISWNTMVAGYGIHGLGENAIRTFDQMIKDGFEPDGVTFVAVLSACSHAGLV 528

Query: 436 QEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHG 495
            EG   F+ M  +  + P  EH+AC+++LL +AG   +    ++ MP E ++ +W AL  
Sbjct: 529 AEGRELFDKMIKEFRVEPQMEHYACMVDLLGRAGLLQEASKVVKSMPVEPNACVWGALLN 588

Query: 496 VCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKE 555
            CR+H N ++  +   Q+ + N + + ++ LLS+IY+A G+     KVR     +  KK 
Sbjct: 589 SCRMHKNTEVAEETASQIFNLNSEIAGSYMLLSNIYAASGRWEDSAKVRISAKTKGLKKT 648

Query: 556 QAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQMGEDA--PSLDADR 605
              SWI+++ KV+ FS  ++ H   + +Y +L+ L  QM  +   P +D ++
Sbjct: 649 PGQSWIQVKKKVYMFSAGNTQHAELEEVYRILKDLGLQMEVEGYIPDIDEEQ 700



 Score =  177 bits (449), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 109/396 (27%), Positives = 196/396 (49%), Gaps = 41/396 (10%)

Query: 58  ILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVK 117
           +LQQC++S    L +++H  + +T     + FL+  ++S+Y   G   DA++VF+  P++
Sbjct: 40  LLQQCSKSH---LSQQIHSQIIVTGSHR-SAFLAARVVSVYAGFGLVSDAQRVFEVSPIE 95

Query: 118 NLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLR 177
               ++N+L                          WN+++      G  EE L+ Y  +R
Sbjct: 96  ---CFSNLLL-------------------------WNSILRANVAHGYCEEALEIYCRMR 127

Query: 178 RFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELS 237
           +  +S + F+F  ++  C  +   KL R VHG V+  GF  N+ + + ++  Y K G + 
Sbjct: 128 KLGVSADGFTFPLVIRACALMGSRKLCRSVHGHVVEMGFQWNLHVGNELMGMYGKIGRMD 187

Query: 238 DARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMP----EKNPVSWTTLIAGYT 293
           DAR++F+    R  ++W TMVSGYA   D   AS++F  M     E N V+WT+L++ + 
Sbjct: 188 DARKVFERMAVRSCVSWNTMVSGYALNYDCHGASEMFRMMGSAGLEPNLVTWTSLLSSHA 247

Query: 294 RNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTI 353
           R G   + +ELF RM +  I       +  L     + +   GK +HG++++  F +   
Sbjct: 248 RCGQHVETMELFGRMRMRGIGATAEALAVVLSVSVDLAAFDEGKVIHGYVVKGGFENYLF 307

Query: 354 VMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRS 413
           V +SLI +Y K G +N  R +F L    +N + WN +IS+    G+ ++A  +F  + ++
Sbjct: 308 VKNSLICLYGKHGNVNAARILF-LEIKTKNIVSWNALISSYADLGWCDEAFAIFLQLEKT 366

Query: 414 S----VKPDKITLAVILNACTHSGLVQEGLTYFESM 445
                V+P+ ++ + ++      G  +E L  F  M
Sbjct: 367 DEYPMVRPNVVSWSAVIGGFASKGQGEEALELFRRM 402



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 87/337 (25%), Positives = 162/337 (48%), Gaps = 38/337 (11%)

Query: 203 LTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYA 262
           L++Q+H Q++VTG   +  +++ +V  YA  G +SDA+R+F+                  
Sbjct: 49  LSQQIHSQIIVTGSHRSAFLAARVVSVYAGFGLVSDAQRVFE------------------ 90

Query: 263 KLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSS 322
            +  +E  S L         + W +++     +G  ++ALE++ RM  L +  +  TF  
Sbjct: 91  -VSPIECFSNL---------LLWNSILRANVAHGYCEEALEIYCRMRKLGVSADGFTFPL 140

Query: 323 CLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKE 382
            + ACA + S K  + VHG ++   F+ N  V + L+ MY K G ++D R+VF+    + 
Sbjct: 141 VIRACALMGSRKLCRSVHGHVVEMGFQWNLHVGNELMGMYGKIGRMDDARKVFERMAVR- 199

Query: 383 NSMLWNTMISALTQHGYD-EQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTY 441
           + + WNTM+S    + YD   A  +F  M  + ++P+ +T   +L++    G   E +  
Sbjct: 200 SCVSWNTMVSGYALN-YDCHGASEMFRMMGSAGLEPNLVTWTSLLSSHARCGQHVETMEL 258

Query: 442 FESMTHDLGIIPNQEHHACLIELLAQAGCSDQ---LMNQLEKMPYEHDSYLWNALHGVCR 498
           F  M    GI    E  A ++ +       D+   +   + K  +E+  ++ N+L  +  
Sbjct: 259 FGRMRMR-GIGATAEALAVVLSVSVDLAAFDEGKVIHGYVVKGGFENYLFVKNSLICLYG 317

Query: 499 IHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALG 535
            HGN++  R +  ++  +N  S   + L+SS Y+ LG
Sbjct: 318 KHGNVNAARILFLEIKTKNIVS--WNALISS-YADLG 351


>gi|225449732|ref|XP_002267472.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Vitis vinifera]
          Length = 1058

 Score =  342 bits (876), Expect = 5e-91,   Method: Compositional matrix adjust.
 Identities = 177/563 (31%), Positives = 315/563 (55%), Gaps = 13/563 (2%)

Query: 31  GQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFL 90
           G L  A+   + + +R       T+     QC      +L   + L+ ++ ++   T   
Sbjct: 410 GSLDLAMHFFETMPERN-EYSWTTMIAAFAQCG-----RLDDAIQLYERVPEQTVAT--- 460

Query: 91  SNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDV 150
              +++ Y + G    AR +FD+I   N+ ++N +++GY   GM+K A++LF  M  ++ 
Sbjct: 461 KTAMMTAYAQVGRIQKARLIFDEILNPNVVAWNAIIAGYTQNGMLKEAKDLFQKMPVKNS 520

Query: 151 VSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQ 210
            SW  MI G+ ++    E L+    L R     ++ SF   L+ C  + ++++ R +H  
Sbjct: 521 ASWAAMIAGFVQNEESREALELLIELHRSGSVPSDSSFTSALSACANIGDVEIGRVIHSL 580

Query: 211 VLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESA 270
            + TG   N  + + ++  YAKCG + D   +F     +D ++W +++SG ++   ++ A
Sbjct: 581 AIKTGCQFNSYVMNGLISMYAKCGNVEDGSHVFRTIRVKDTVSWNSLISGLSENYMLDDA 640

Query: 271 SKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASI 330
             +F +MP+++ VSWT +I+ Y + G G+ AL+LF  M+   I+PNQ T +S L AC ++
Sbjct: 641 RVVFEKMPKRDVVSWTAIISAYVQAGHGEVALDLFLDMLARGIKPNQLTVTSLLSACGNL 700

Query: 331 VSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSML-WNT 389
            ++K G+Q H  + +  F +   V +SLI MY KCG   DG  VF+  +  E+ ++ WN 
Sbjct: 701 GAIKLGEQFHALIFKLGFDTFLFVGNSLITMYFKCG-YEDGFCVFE--EMPEHDLITWNA 757

Query: 390 MISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDL 449
           ++    Q+G  ++AI++F  M    + PD+++   +L AC+H+GLV EG  +F SMT   
Sbjct: 758 VLVGCAQNGLGKEAIKIFEQMEVEGILPDQMSFLGVLCACSHAGLVDEGWAHFNSMTQKY 817

Query: 450 GIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKV 509
           GI+P   H+ C+++LL +AG   +    +E MP + DS +W AL G CRIH N+++G++V
Sbjct: 818 GIMPLVYHYTCMVDLLGRAGYLSEAEALIENMPVKPDSVIWEALLGACRIHRNVELGQRV 877

Query: 510 VDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHA 569
            ++L       SAT+ LLS+++++ G    V ++R+L+ ++   KE  ISWI+++NK+H 
Sbjct: 878 AERLFQMTKPKSATYVLLSNLFASQGMWDKVAEIRKLMKDQGLTKEPGISWIQVKNKLHC 937

Query: 570 FSVSDSLHPMRDVLYSVLEQLAG 592
           F   D  H   + +YS L++  G
Sbjct: 938 FVTGDRTHDQIEEIYSALKEYYG 960



 Score =  219 bits (557), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 168/596 (28%), Positives = 274/596 (45%), Gaps = 107/596 (17%)

Query: 10  INRKNLPNNCLIQSFLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLK 69
           I R  +  N +I  +      G++ EA    D    + IR    T   +L   A+   ++
Sbjct: 198 IQRDVVSWNSMINGY---SQNGKVDEARLLFDAFVGKNIR----TWTILLTGYAKEGRIE 250

Query: 70  LGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGY 129
             + V     +T+R   +    N +IS Y + G   +ARK+FD++P KN+ S+N++++GY
Sbjct: 251 EAREVFE--SMTERNVVSW---NAMISGYVQNGDLKNARKLFDEMPEKNVASWNSVVTGY 305

Query: 130 ANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFA 189
            +   M  AR LFD M ER+ VSW  MI GY       E    +  + R     ++  F 
Sbjct: 306 CHCYRMSEARELFDQMPERNSVSWMVMISGYVHISDYWEAWDVFVKMCRTVARPDQSIFV 365

Query: 190 GILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAY------------------- 230
            +L+    L++L+L   +    + TG+  +VV+ S+I++AY                   
Sbjct: 366 VVLSAITGLDDLELIGSLRPIAIKTGYEGDVVVGSAILNAYTRNGSLDLAMHFFETMPER 425

Query: 231 ------------AKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMP 278
                       A+CG L DA +L++    + V T T M++ YA++G ++ A  +F+E+ 
Sbjct: 426 NEYSWTTMIAAFAQCGRLDDAIQLYERVPEQTVATKTAMMTAYAQVGRIQKARLIFDEIL 485

Query: 279 EKNPVSWTTLIAGYTRNGLGQKALELFTRMMI------------------------LRIR 314
             N V+W  +IAGYT+NG+ ++A +LF +M +                        L I 
Sbjct: 486 NPNVVAWNAIIAGYTQNGMLKEAKDLFQKMPVKNSASWAAMIAGFVQNEESREALELLIE 545

Query: 315 -------PNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGC 367
                  P+  +F+S L ACA+I  ++ G+ +H   I+T  + N+ VM+ LI MY+KCG 
Sbjct: 546 LHRSGSVPSDSSFTSALSACANIGDVEIGRVIHSLAIKTGCQFNSYVMNGLISMYAKCGN 605

Query: 368 LNDGRQVFDLTDNK-------------ENSML-----------------WNTMISALTQH 397
           + DG  VF     K             EN ML                 W  +ISA  Q 
Sbjct: 606 VEDGSHVFRTIRVKDTVSWNSLISGLSENYMLDDARVVFEKMPKRDVVSWTAIISAYVQA 665

Query: 398 GYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEH 457
           G+ E A+ LF DM+   +KP+++T+  +L+AC + G ++ G   F ++   LG       
Sbjct: 666 GHGEVALDLFLDMLARGIKPNQLTVTSLLSACGNLGAIKLG-EQFHALIFKLGFDTFLFV 724

Query: 458 HACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQL 513
              LI +  + G  D      E+MP EHD   WNA+   C  +G      K+ +Q+
Sbjct: 725 GNSLITMYFKCGYEDGFC-VFEEMP-EHDLITWNAVLVGCAQNGLGKEAIKIFEQM 778



 Score =  167 bits (424), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 108/413 (26%), Positives = 197/413 (47%), Gaps = 52/413 (12%)

Query: 83  RKTPTT--FLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARN 140
           ++TP T  F  N  I    + G   +AR+VF+++  +++ S+N+M++GY+  G +  AR 
Sbjct: 164 KETPQTHLFQCNTRIQELGRLGRVEEARRVFNEMIQRDVVSWNSMINGYSQNGKVDEARL 223

Query: 141 LFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEE 200
           LFD    +++ +W  ++ GYAK G +EE  + ++ +                        
Sbjct: 224 LFDAFVGKNIRTWTILLTGYAKEGRIEEAREVFESMTE---------------------- 261

Query: 201 LKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSG 260
                             NVV  ++++  Y + G+L +AR+LFDE   ++V +W ++V+G
Sbjct: 262 -----------------RNVVSWNAMISGYVQNGDLKNARKLFDEMPEKNVASWNSVVTG 304

Query: 261 YAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTF 320
           Y     M  A +LF++MPE+N VSW  +I+GY       +A ++F +M     RP+Q  F
Sbjct: 305 YCHCYRMSEARELFDQMPERNSVSWMVMISGYVHISDYWEAWDVFVKMCRTVARPDQSIF 364

Query: 321 SSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDN 380
              L A   +  L+    +    I+T +  + +V S++++ Y++ G L+     F+ T  
Sbjct: 365 VVVLSAITGLDDLELIGSLRPIAIKTGYEGDVVVGSAILNAYTRNGSLDLAMHFFE-TMP 423

Query: 381 KENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLT 440
           + N   W TMI+A  Q G  + AI+L+  +   +V     T   ++ A    G +Q+   
Sbjct: 424 ERNEYSWTTMIAAFAQCGRLDDAIQLYERVPEQTVA----TKTAMMTAYAQVGRIQKARL 479

Query: 441 YFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNAL 493
            F+ + +     PN      +I    Q G   +  +  +KMP + +S  W A+
Sbjct: 480 IFDEILN-----PNVVAWNAIIAGYTQNGMLKEAKDLFQKMPVK-NSASWAAM 526



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 83/332 (25%), Positives = 153/332 (46%), Gaps = 50/332 (15%)

Query: 219 NVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMP 278
           +VV  +S+++ Y++ G++ +AR LFD    +++ TWT +++GYAK G +E A ++F  M 
Sbjct: 201 DVVSWNSMINGYSQNGKVDEARLLFDAFVGKNIRTWTILLTGYAKEGRIEEAREVFESMT 260

Query: 279 EKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQ 338
           E+N VSW  +I+GY +NG  + A +LF  M      P +                     
Sbjct: 261 ERNVVSWNAMISGYVQNGDLKNARKLFDEM------PEK--------------------- 293

Query: 339 VHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHG 398
                       N    +S++  Y  C  +++ R++FD    + NS+ W  MIS      
Sbjct: 294 ------------NVASWNSVVTGYCHCYRMSEARELFDQMPER-NSVSWMVMISGYVHIS 340

Query: 399 YDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQ-EGLTYFESMTHDLGIIPNQEH 457
              +A  +F  M R+  +PD+    V+L+A T  GL   E +     +    G   +   
Sbjct: 341 DYWEAWDVFVKMCRTVARPDQSIFVVVLSAIT--GLDDLELIGSLRPIAIKTGYEGDVVV 398

Query: 458 HACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQN 517
            + ++    + G  D  M+  E MP E + Y W  +       G +D   ++ +++ +  
Sbjct: 399 GSAILNAYTRNGSLDLAMHFFETMP-ERNEYSWTTMIAAFAQCGRLDDAIQLYERVPE-- 455

Query: 518 PQSSATHGLLSSIYSALGKGRLVEKVRQLINE 549
            Q+ AT   + + Y+ +G+   ++K R + +E
Sbjct: 456 -QTVATKTAMMTAYAQVGR---IQKARLIFDE 483


>gi|359482518|ref|XP_002279880.2| PREDICTED: uncharacterized protein LOC100266920 [Vitis vinifera]
          Length = 1753

 Score =  342 bits (876), Expect = 5e-91,   Method: Compositional matrix adjust.
 Identities = 185/592 (31%), Positives = 323/592 (54%), Gaps = 16/592 (2%)

Query: 28   ISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPT 87
            ++ G   EA+     + + G+     T   +++ CA   S KL + VH H+ +       
Sbjct: 949  VAHGYCEEALEIYCRMRKLGVSADGFTFPLVIRACALMGSRKLCRSVHGHV-VEMGFQWN 1007

Query: 88   TFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMA- 146
              + N L+ MY K G   DARKVF+++ V++  S+N M+SGYA       A  +F  M  
Sbjct: 1008 LHVGNELMGMYGKIGRMDDARKVFERMAVRSCVSWNTMVSGYALNYDCHGASEMFRMMGS 1067

Query: 147  ---ERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKL 203
               E ++V+W +++  +A+ G   E ++ +  +R   I     + A +L++ V L     
Sbjct: 1068 AGLEPNLVTWTSLLSSHARCGQHVETMELFGRMRMRGIGATAEALAVVLSVSVDLAAFDE 1127

Query: 204  TRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAK 263
             + +HG V+  GF + + + +S++  Y K G ++ AR LF E   +++++W  ++S YA 
Sbjct: 1128 GKVIHGYVVKGGFENYLFVKNSLICLYGKHGNVNAARILFLEIKTKNIVSWNALISSYAD 1187

Query: 264  LGDMESASKLF------NEMPEKNP--VSWTTLIAGYTRNGLGQKALELFTRMMILRIRP 315
            LG  + A  +F      +E P   P  VSW+ +I G+   G G++ALELF RM + +++ 
Sbjct: 1188 LGWCDEAFAIFLQLEKTDEYPMVRPNVVSWSAVIGGFASKGQGEEALELFRRMQLAKVKA 1247

Query: 316  NQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVF 375
            N  T +S L  CA + +L  G+++HG ++R+    N +V + LI+MY+K G   +G  VF
Sbjct: 1248 NSVTIASVLSVCAELAALHLGREIHGHVVRSLMDGNILVGNGLINMYTKSGSFKEGNLVF 1307

Query: 376  DLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLV 435
            +  +NK+  + WNTM++    HG  E AIR F  M++   +PD +T   +L+AC+H+GLV
Sbjct: 1308 EKIENKD-LISWNTMVAGYGIHGLGENAIRTFDQMIKDGFEPDGVTFVAVLSACSHAGLV 1366

Query: 436  QEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHG 495
             EG   F+ M  +  + P  EH+AC+++LL +AG   +    ++ MP E ++ +W AL  
Sbjct: 1367 AEGRELFDKMIKEFRVEPQMEHYACMVDLLGRAGLLQEASKVVKSMPVEPNACVWGALLN 1426

Query: 496  VCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKE 555
             CR+H N ++  +   Q+ + N + + ++ LLS+IY+A G+     KVR     +  KK 
Sbjct: 1427 SCRMHKNTEVAEETASQIFNLNSEIAGSYMLLSNIYAASGRWEDSAKVRISAKTKGLKKT 1486

Query: 556  QAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQMGEDA--PSLDADR 605
               SWI+++ KV+ FS  ++ H   + +Y +L+ L  QM  +   P +D ++
Sbjct: 1487 PGQSWIQVKKKVYMFSAGNTQHAELEEVYRILKDLGLQMEVEGYIPDIDEEQ 1538



 Score =  176 bits (446), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 109/396 (27%), Positives = 196/396 (49%), Gaps = 41/396 (10%)

Query: 58   ILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVK 117
            +LQQC++S    L +++H  + +T     + FL+  ++S+Y   G   DA++VF+  P++
Sbjct: 878  LLQQCSKSH---LSQQIHSQIIVTGSHR-SAFLAARVVSVYAGFGLVSDAQRVFEVSPIE 933

Query: 118  NLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLR 177
                ++N+L                          WN+++      G  EE L+ Y  +R
Sbjct: 934  ---CFSNLLL-------------------------WNSILRANVAHGYCEEALEIYCRMR 965

Query: 178  RFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELS 237
            +  +S + F+F  ++  C  +   KL R VHG V+  GF  N+ + + ++  Y K G + 
Sbjct: 966  KLGVSADGFTFPLVIRACALMGSRKLCRSVHGHVVEMGFQWNLHVGNELMGMYGKIGRMD 1025

Query: 238  DARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMP----EKNPVSWTTLIAGYT 293
            DAR++F+    R  ++W TMVSGYA   D   AS++F  M     E N V+WT+L++ + 
Sbjct: 1026 DARKVFERMAVRSCVSWNTMVSGYALNYDCHGASEMFRMMGSAGLEPNLVTWTSLLSSHA 1085

Query: 294  RNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTI 353
            R G   + +ELF RM +  I       +  L     + +   GK +HG++++  F +   
Sbjct: 1086 RCGQHVETMELFGRMRMRGIGATAEALAVVLSVSVDLAAFDEGKVIHGYVVKGGFENYLF 1145

Query: 354  VMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRS 413
            V +SLI +Y K G +N  R +F L    +N + WN +IS+    G+ ++A  +F  + ++
Sbjct: 1146 VKNSLICLYGKHGNVNAARILF-LEIKTKNIVSWNALISSYADLGWCDEAFAIFLQLEKT 1204

Query: 414  S----VKPDKITLAVILNACTHSGLVQEGLTYFESM 445
                 V+P+ ++ + ++      G  +E L  F  M
Sbjct: 1205 DEYPMVRPNVVSWSAVIGGFASKGQGEEALELFRRM 1240



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 87/337 (25%), Positives = 161/337 (47%), Gaps = 38/337 (11%)

Query: 203  LTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYA 262
            L++Q+H Q++VTG   +  +++ +V  YA  G +SDA+R+F+                  
Sbjct: 887  LSQQIHSQIIVTGSHRSAFLAARVVSVYAGFGLVSDAQRVFE------------------ 928

Query: 263  KLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSS 322
             +  +E  S L           W +++     +G  ++ALE++ RM  L +  +  TF  
Sbjct: 929  -VSPIECFSNLL---------LWNSILRANVAHGYCEEALEIYCRMRKLGVSADGFTFPL 978

Query: 323  CLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKE 382
             + ACA + S K  + VHG ++   F+ N  V + L+ MY K G ++D R+VF+    + 
Sbjct: 979  VIRACALMGSRKLCRSVHGHVVEMGFQWNLHVGNELMGMYGKIGRMDDARKVFERMAVR- 1037

Query: 383  NSMLWNTMISALTQHGYD-EQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTY 441
            + + WNTM+S    + YD   A  +F  M  + ++P+ +T   +L++    G   E +  
Sbjct: 1038 SCVSWNTMVSGYALN-YDCHGASEMFRMMGSAGLEPNLVTWTSLLSSHARCGQHVETMEL 1096

Query: 442  FESMTHDLGIIPNQEHHACLIELLAQAGCSDQ---LMNQLEKMPYEHDSYLWNALHGVCR 498
            F  M    GI    E  A ++ +       D+   +   + K  +E+  ++ N+L  +  
Sbjct: 1097 FGRMRMR-GIGATAEALAVVLSVSVDLAAFDEGKVIHGYVVKGGFENYLFVKNSLICLYG 1155

Query: 499  IHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALG 535
             HGN++  R +  ++  +N  S   + L+SS Y+ LG
Sbjct: 1156 KHGNVNAARILFLEIKTKNIVS--WNALISS-YADLG 1189


>gi|357516843|ref|XP_003628710.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355522732|gb|AET03186.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 748

 Score =  341 bits (874), Expect = 8e-91,   Method: Compositional matrix adjust.
 Identities = 180/590 (30%), Positives = 326/590 (55%), Gaps = 41/590 (6%)

Query: 7   PRGINRKNLPNNCLIQSFLSLISKGQLSEAISSLDLLAQR--GIRLPAETLAFILQQCAE 64
           PR   R  +  N LI  +      G + +++ + +L+ +      L   T + +L   ++
Sbjct: 102 PR---RDGVSWNSLISGYAGC---GLIYQSVKAYNLMLKNDGSFNLNRITFSTLLILASK 155

Query: 65  SKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNN 124
              +KLG+++H H+ +        F+ + L+ MY K G    ARKVFD++P KN+  YN 
Sbjct: 156 RGCVKLGRQIHGHV-VKFGFMSYVFVGSPLVDMYSKMGMISCARKVFDELPEKNVVMYNT 214

Query: 125 MLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCN 184
           ++ G    G ++ ++ LF  M ERD +SW +MI G+ ++G   + +  ++ ++  ++  +
Sbjct: 215 LIMGLMRCGRVEDSKRLFFEMRERDSISWTSMITGFTQNGLDRDAIDIFREMKLENLQMD 274

Query: 185 EFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFD 244
           +++F  +LT C  +  L+  +QVH  ++ T +  N+ ++S++VD Y KC           
Sbjct: 275 QYTFGSVLTACGGVMALQEGKQVHAYIIRTDYKDNIFVASALVDMYCKCK---------- 324

Query: 245 ETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALEL 304
                                +++SA  +F +M  KN VSWT ++ GY +NG  ++A++ 
Sbjct: 325 ---------------------NIKSAEAVFKKMTCKNVVSWTAMLVGYGQNGYSEEAVKT 363

Query: 305 FTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSK 364
           F+ M    I P+  T  S + +CA++ SL+ G Q H   + +   S   V ++L+ +Y K
Sbjct: 364 FSDMQKYGIEPDDFTLGSVISSCANLASLEEGAQFHARALTSGLISFITVSNALVTLYGK 423

Query: 365 CGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAV 424
           CG + D  ++F+    K+  + W  ++S   Q G   + I LF  M+   +KPDK+T   
Sbjct: 424 CGSIEDSHRLFNEISFKD-EVTWTALVSGYAQFGKANETIGLFESMLAHGLKPDKVTFIG 482

Query: 425 ILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYE 484
           +L+AC+ +GLV++G   FESM ++ GI+P Q+H+ C+I+L ++AG  ++  N + KMP+ 
Sbjct: 483 VLSACSRAGLVEKGNQIFESMINEHGIVPIQDHYTCMIDLFSRAGRIEEARNFINKMPFS 542

Query: 485 HDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVR 544
            D+  W  L   CR +GN+D+G+   + L++ +P ++A++ LLSS+Y+A GK   V ++R
Sbjct: 543 PDAISWATLLSSCRFYGNMDIGKWAAEFLMELDPHNTASYVLLSSVYAAKGKWEEVARLR 602

Query: 545 QLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQM 594
           + + ++  +KE   SWI+ +N+VH FS  D  +P  D +YS LE+L  +M
Sbjct: 603 KDMRDKGLRKEPGCSWIKYKNQVHVFSADDKSNPFSDQIYSELEKLNYKM 652



 Score =  303 bits (775), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 173/546 (31%), Positives = 292/546 (53%), Gaps = 55/546 (10%)

Query: 58  ILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVK 117
           +L+ C E+ +    K +H H+ +     P TFL N+LIS Y K GS   A KVFD++P  
Sbjct: 15  LLKLCCETHNFTKAKNLHSHI-IKTLPYPETFLLNNLISSYAKLGSIPYACKVFDQMPHP 73

Query: 118 NLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLR 177
           NL+S+N +LS Y+ LG +     LFD M  RD VSWN++I GYA  G + + +K Y ++ 
Sbjct: 74  NLYSWNTILSAYSKLGRVSEMEYLFDAMPRRDGVSWNSLISGYAGCGLIYQSVKAYNLML 133

Query: 178 R--FSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGE 235
           +   S + N  +F+ +L +  K   +KL RQ+HG V+  GF+S V + S +VD Y+K G 
Sbjct: 134 KNDGSFNLNRITFSTLLILASKRGCVKLGRQIHGHVVKFGFMSYVFVGSPLVDMYSKMGM 193

Query: 236 LSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRN 295
           +S AR++FDE   ++V+ + T++ G  + G +E + +LF EM E++ +SWT++I G+T+N
Sbjct: 194 ISCARKVFDELPEKNVVMYNTLIMGLMRCGRVEDSKRLFFEMRERDSISWTSMITGFTQN 253

Query: 296 GLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVM 355
           GL + A+++F  M +  ++ +Q+TF S L AC  +++L+ GKQVH ++IRT+++ N  V 
Sbjct: 254 GLDRDAIDIFREMKLENLQMDQYTFGSVLTACGGVMALQEGKQVHAYIIRTDYKDNIFVA 313

Query: 356 SSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSV 415
           S+L+DMY KC  +     VF     K N + W  M+    Q+GY E+A++ F DM +  +
Sbjct: 314 SALVDMYCKCKNIKSAEAVFKKMTCK-NVVSWTAMLVGYGQNGYSEEAVKTFSDMQKYGI 372

Query: 416 KPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLM 475
           +PD  TL  ++++C +   ++EG   F +     G+I        L+ L  + G  +   
Sbjct: 373 EPDDFTLGSVISSCANLASLEEG-AQFHARALTSGLISFITVSNALVTLYGKCGSIEDSH 431

Query: 476 NQLEKMPYEHDSYLWNAL----------------------HGV-------------CRIH 500
               ++ ++ D   W AL                      HG+             C   
Sbjct: 432 RLFNEISFK-DEVTWTALVSGYAQFGKANETIGLFESMLAHGLKPDKVTFIGVLSACSRA 490

Query: 501 GNIDMGRKVVDQLIDQNPQSSATHGLL------SSIYSALGKGRLVEKVRQLINERQFKK 554
           G ++ G ++ + +I++       HG++      + +     +   +E+ R  IN+  F  
Sbjct: 491 GLVEKGNQIFESMINE-------HGIVPIQDHYTCMIDLFSRAGRIEEARNFINKMPFSP 543

Query: 555 EQAISW 560
           + AISW
Sbjct: 544 D-AISW 548



 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 79/283 (27%), Positives = 143/283 (50%), Gaps = 32/283 (11%)

Query: 188 FAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETD 247
           +  +L +C +       + +H  ++ T       + ++++ +YAK G +  A ++FD+  
Sbjct: 12  YCALLKLCCETHNFTKAKNLHSHIIKTLPYPETFLLNNLISSYAKLGSIPYACKVFDQMP 71

Query: 248 ARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTR 307
             ++ +W T++S Y+KLG +     LF+ MP ++ VSW +LI+GY   GL  ++++ +  
Sbjct: 72  HPNLYSWNTILSAYSKLGRVSEMEYLFDAMPRRDGVSWNSLISGYAGCGLIYQSVKAYNL 131

Query: 308 MMI--LRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKC 365
           M+        N+ TFS+ L   +    +K G+Q+HG +++  F S   V S L+DMYSK 
Sbjct: 132 MLKNDGSFNLNRITFSTLLILASKRGCVKLGRQIHGHVVKFGFMSYVFVGSPLVDMYSKM 191

Query: 366 GCLNDGRQVFD----------------------LTDNK--------ENSMLWNTMISALT 395
           G ++  R+VFD                      + D+K         +S+ W +MI+  T
Sbjct: 192 GMISCARKVFDELPEKNVVMYNTLIMGLMRCGRVEDSKRLFFEMRERDSISWTSMITGFT 251

Query: 396 QHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEG 438
           Q+G D  AI +F +M   +++ D+ T   +L AC     +QEG
Sbjct: 252 QNGLDRDAIDIFREMKLENLQMDQYTFGSVLTACGGVMALQEG 294



 Score = 52.4 bits (124), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 55/248 (22%), Positives = 110/248 (44%), Gaps = 17/248 (6%)

Query: 320 FSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTD 379
           + + L  C    +    K +H  +I+T     T ++++LI  Y+K G +    +VFD   
Sbjct: 12  YCALLKLCCETHNFTKAKNLHSHIIKTLPYPETFLLNNLISSYAKLGSIPYACKVFDQMP 71

Query: 380 NKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGL 439
           +  N   WNT++SA ++ G   +   LF  M R     D ++   +++     GL+ + +
Sbjct: 72  H-PNLYSWNTILSAYSKLGRVSEMEYLFDAMPRR----DGVSWNSLISGYAGCGLIYQSV 126

Query: 440 TYFESMTHDLGIIP-NQEHHACLIELLAQAGC---SDQLMNQLEKMPYEHDSYLWNALHG 495
             +  M  + G    N+   + L+ L ++ GC     Q+   + K  +    ++ + L  
Sbjct: 127 KAYNLMLKNDGSFNLNRITFSTLLILASKRGCVKLGRQIHGHVVKFGFMSYVFVGSPLVD 186

Query: 496 VCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKE 555
           +    G I   RKV D+L ++N        + +++   L +   VE  ++L  E   ++ 
Sbjct: 187 MYSKMGMISCARKVFDELPEKNVV------MYNTLIMGLMRCGRVEDSKRLFFE--MRER 238

Query: 556 QAISWIEI 563
            +ISW  +
Sbjct: 239 DSISWTSM 246


>gi|297844988|ref|XP_002890375.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297336217|gb|EFH66634.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 760

 Score =  341 bits (874), Expect = 8e-91,   Method: Compositional matrix adjust.
 Identities = 184/596 (30%), Positives = 324/596 (54%), Gaps = 16/596 (2%)

Query: 21  IQSFLSLI---SKGQL-SEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHL 76
           + SF SLI   +K +L S++I     +   G+      L  + + CAE  + K GK++H 
Sbjct: 81  VYSFSSLIYALTKAKLFSQSIGVFSRMFSHGLIPDTHVLPNLFKVCAELSAFKAGKQIHC 140

Query: 77  HLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMK 136
            +          F+   L  MY +CG   DARKVFD++  K++ + + +L GYA  G ++
Sbjct: 141 -VACVSGLDMDAFVQGSLFHMYMRCGRMGDARKVFDRMSEKDVVTCSALLCGYARKGCLE 199

Query: 137 HARNLFDNMA----ERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGIL 192
               +   M     E ++VSWN ++ G+ +SG  +E +  ++ +       ++ + + +L
Sbjct: 200 EVVRILSEMEKSGIEPNIVSWNGILSGFNRSGYHKEAVIMFQKMHHLGFCPDQVTVSSVL 259

Query: 193 TICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVL 252
                 E L + RQ+HG V+  G L +  + S+++D Y K G +    +LFDE +  +  
Sbjct: 260 PSVGDSENLNMGRQIHGYVIKQGLLKDKCVISAMLDMYGKSGHVYGIIKLFDEFEMMETG 319

Query: 253 TWTTMVSGYAKLGDMESASKLFNEMPEK----NPVSWTTLIAGYTRNGLGQKALELFTRM 308
                ++G ++ G ++ A ++F    E+    N VSWT++IAG  +NG   +ALELF  M
Sbjct: 320 VCNAYITGLSRNGLVDKALEMFGLFKEQKMELNVVSWTSIIAGCAQNGKDIEALELFREM 379

Query: 309 MILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCL 368
            +  ++PN+ T  S L AC +I +L HG+  HGF +R +   +  V S+LIDMY+KCG +
Sbjct: 380 QVAGVKPNRVTIPSMLPACGNIAALGHGRSTHGFAVRVHLLDDVHVGSALIDMYAKCGRI 439

Query: 369 NDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNA 428
              + VF++   K N + WN++++  + HG  ++ + +F  ++R+ +KPD I+   +L+A
Sbjct: 440 KMSQIVFNMMPTK-NLVCWNSLMNGYSMHGKAKEVMSIFESLMRTRLKPDFISFTSLLSA 498

Query: 429 CTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSY 488
           C   GL  EG  YF  M+ + GI P  EH++C++ LL +AG   +  + ++++P+E DS 
Sbjct: 499 CGQVGLTDEGWKYFNMMSEEYGIKPRLEHYSCMVNLLGRAGKLQEAYDLIKEIPFEPDSC 558

Query: 489 LWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLIN 548
           +W AL   CR+  N+D+      +L    P++  T+ L+S+IY+A G    V+ +R  + 
Sbjct: 559 VWGALLNSCRLQNNVDLAEIAAQKLFHLEPENPGTYVLMSNIYAAKGMWTEVDSIRNKME 618

Query: 549 ERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQMGEDA--PSLD 602
               KK    SWI+++NKV+     D  HP  D +   +++++ +M +    P+LD
Sbjct: 619 SLGLKKNPGCSWIQVKNKVYTLLACDKSHPQIDQITEKMDEISEEMRKSGHRPNLD 674



 Score =  154 bits (390), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 101/419 (24%), Positives = 197/419 (47%), Gaps = 48/419 (11%)

Query: 125 MLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCN 184
           +++ Y+N      A  +  ++ +  V S++++I    K+    + +  +  +    +  +
Sbjct: 56  LIASYSNYNCFNDADLILQSIPDPTVYSFSSLIYALTKAKLFSQSIGVFSRMFSHGLIPD 115

Query: 185 EFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFD 244
                 +  +C +L   K  +Q+H    V+G   +  +  S+   Y +CG + DAR++FD
Sbjct: 116 THVLPNLFKVCAELSAFKAGKQIHCVACVSGLDMDAFVQGSLFHMYMRCGRMGDARKVFD 175

Query: 245 ETDARDVLTWTTMVSGYAKLGDMESASKLFNEMP----EKNPVSWTTLIAGYTRNGLGQK 300
               +DV+T + ++ GYA+ G +E   ++ +EM     E N VSW  +++G+ R+G  ++
Sbjct: 176 RMSEKDVVTCSALLCGYARKGCLEEVVRILSEMEKSGIEPNIVSWNGILSGFNRSGYHKE 235

Query: 301 ALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLID 360
           A+ +F +M  L   P+Q T SS L +     +L  G+Q+HG++I+     +  V+S+++D
Sbjct: 236 AVIMFQKMHHLGFCPDQVTVSSVLPSVGDSENLNMGRQIHGYVIKQGLLKDKCVISAMLD 295

Query: 361 MYSKCGCLNDGRQVFD---------------------LTDN--------KE-----NSML 386
           MY K G +    ++FD                     L D         KE     N + 
Sbjct: 296 MYGKSGHVYGIIKLFDEFEMMETGVCNAYITGLSRNGLVDKALEMFGLFKEQKMELNVVS 355

Query: 387 WNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMT 446
           W ++I+   Q+G D +A+ LF +M  + VKP+++T+  +L AC +   +  G +     T
Sbjct: 356 WTSIIAGCAQNGKDIEALELFREMQVAGVKPNRVTIPSMLPACGNIAALGHGRS-----T 410

Query: 447 HDLGI----IPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHG 501
           H   +    + +    + LI++ A+ G           MP + +   WN+L     +HG
Sbjct: 411 HGFAVRVHLLDDVHVGSALIDMYAKCGRIKMSQIVFNMMPTK-NLVCWNSLMNGYSMHG 468



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 60/252 (23%), Positives = 116/252 (46%), Gaps = 33/252 (13%)

Query: 204 TRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAK 263
           T Q H ++L +G  ++  IS+ ++ +Y+     +DA                        
Sbjct: 34  TTQAHARILKSGAQNDGYISAKLIASYSNYNCFNDA------------------------ 69

Query: 264 LGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSC 323
             D+     +   +P+    S+++LI   T+  L  +++ +F+RM    + P+ H   + 
Sbjct: 70  --DL-----ILQSIPDPTVYSFSSLIYALTKAKLFSQSIGVFSRMFSHGLIPDTHVLPNL 122

Query: 324 LCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKEN 383
              CA + + K GKQ+H     +    +  V  SL  MY +CG + D R+VFD    K+ 
Sbjct: 123 FKVCAELSAFKAGKQIHCVACVSGLDMDAFVQGSLFHMYMRCGRMGDARKVFDRMSEKD- 181

Query: 384 SMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFE 443
            +  + ++    + G  E+ +R+  +M +S ++P+ ++   IL+    SG  +E +  F+
Sbjct: 182 VVTCSALLCGYARKGCLEEVVRILSEMEKSGIEPNIVSWNGILSGFNRSGYHKEAVIMFQ 241

Query: 444 SMTHDLGIIPNQ 455
            M H LG  P+Q
Sbjct: 242 KM-HHLGFCPDQ 252


>gi|147790932|emb|CAN77232.1| hypothetical protein VITISV_001089 [Vitis vinifera]
          Length = 575

 Score =  340 bits (873), Expect = 9e-91,   Method: Compositional matrix adjust.
 Identities = 173/466 (37%), Positives = 272/466 (58%), Gaps = 5/466 (1%)

Query: 129 YANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSF 188
           YA+LG + ++  LF       V  W  +I G+A  G  E+ L FY  +    +  N F+F
Sbjct: 19  YASLGRLDYSVALFGRTQNPSVFFWTAIIHGHALRGLHEQALNFYAQMLTQGVEPNAFTF 78

Query: 189 AGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDA 248
           + IL +C     ++  + +H Q +  GF S++ + + ++D YA+ G++  A++LFD    
Sbjct: 79  SSILKLC----PIEPGKALHSQAVKLGFDSDLYVRTGLLDVYARGGDVVSAQQLFDTMPE 134

Query: 249 RDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRM 308
           + +++ T M++ YAK G++++A  LF+ M E++ V W  +I GYT+NG+  +AL LF RM
Sbjct: 135 KSLVSLTAMLTCYAKHGELDAARVLFDGMEERDGVCWNVMIDGYTQNGMPNEALVLFRRM 194

Query: 309 MILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCL 368
           +  + +PN+ T  S L AC  + +L+ G+ VH ++     + N  V ++L+DMYSKCG L
Sbjct: 195 LKAKAKPNEVTVLSVLSACGQLGALESGRWVHSYIENNGIQFNVHVGTALVDMYSKCGSL 254

Query: 369 NDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNA 428
            D R VFD  D+K+  + WN+MI      G+ ++A++LF  M R  + P  IT   IL+A
Sbjct: 255 EDARLVFDKIDDKD-VVAWNSMIVGYAMXGFSQEALQLFKSMCRMGLHPTNITFIGILSA 313

Query: 429 CTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSY 488
           C HSG V EG   F  M  + GI P  EH+ C++ LL +AG  +Q    ++ M  E D  
Sbjct: 314 CGHSGWVTEGWDIFNKMKDEYGIEPKIEHYGCMVNLLGRAGHVEQAYELVKNMNIEPDPV 373

Query: 489 LWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLIN 548
           LW  L G CR+HG I +G K+V+ L+DQN  +S T+ LLS+IY+A+G    V ++R ++ 
Sbjct: 374 LWGTLLGACRLHGKIALGEKIVELLVDQNLANSGTYILLSNIYAAVGNWDGVARLRTMMK 433

Query: 549 ERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQM 594
           +   KKE   S IE+ NKVH F      HP R  +Y +LE++ G +
Sbjct: 434 DSGVKKEPGCSSIEVNNKVHEFLAGGLNHPKRKEIYMMLEEINGWL 479



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 114/416 (27%), Positives = 182/416 (43%), Gaps = 84/416 (20%)

Query: 30  KGQLSEAISSLDLLAQRGIRLPAETLAFILQQCA-------ESKSLKLGKRVHLHLKLTQ 82
           +G   +A++    +  +G+   A T + IL+ C         S+++KLG    L+++   
Sbjct: 53  RGLHEQALNFYAQMLTQGVEPNAFTFSSILKLCPIEPGKALHSQAVKLGFDSDLYVR--- 109

Query: 83  RKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLF 142
                      L+ +Y + G  V A+++FD +P K+L S   ML+ YA  G +  AR LF
Sbjct: 110 ---------TGLLDVYARGGDVVSAQQLFDTMPEKSLVSLTAMLTCYAKHGELDAARVLF 160

Query: 143 DNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELK 202
           D M ERD V WN MI GY ++G   E L  ++ + +     NE +   +L+ C +L  L+
Sbjct: 161 DGMEERDGVCWNVMIDGYTQNGMPNEALVLFRRMLKAKAKPNEVTVLSVLSACGQLGALE 220

Query: 203 LTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYA 262
             R VH  +   G   NV + +++VD Y+KCG L DAR +FD+ D +DV+ W +M+ GYA
Sbjct: 221 SGRWVHSYIENNGIQFNVHVGTALVDMYSKCGSLEDARLVFDKIDDKDVVAWNSMIVGYA 280

Query: 263 KLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSS 322
                                            G  Q+AL+LF  M  + + P   TF  
Sbjct: 281 -------------------------------MXGFSQEALQLFKSMCRMGLHPTNITFIG 309

Query: 323 CLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKE 382
            L AC     +  G  +       N   +   +   I+ Y   GC               
Sbjct: 310 ILSACGHSGWVTEGWDIF------NKMKDEYGIEPKIEHY---GC--------------- 345

Query: 383 NSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEG 438
                  M++ L + G+ EQA  L  +M   +++PD +    +L AC   G +  G
Sbjct: 346 -------MVNLLGRAGHVEQAYELVKNM---NIEPDPVLWGTLLGACRLHGKIALG 391



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 68/295 (23%), Positives = 122/295 (41%), Gaps = 67/295 (22%)

Query: 229 AYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTL 288
           +YA  G L  +  LF  T    V  WT ++ G+A                          
Sbjct: 18  SYASLGRLDYSVALFGRTQNPSVFFWTAIIHGHA-------------------------- 51

Query: 289 IAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNF 348
                  GL ++AL  + +M+   + PN  TFSS L  C     ++ GK +H   ++  F
Sbjct: 52  -----LRGLHEQALNFYAQMLTQGVEPNAFTFSSILKLC----PIEPGKALHSQAVKLGF 102

Query: 349 RSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNK--------------------------- 381
            S+  V + L+D+Y++ G +   +Q+FD    K                           
Sbjct: 103 DSDLYVRTGLLDVYARGGDVVSAQQLFDTMPEKSLVSLTAMLTCYAKHGELDAARVLFDG 162

Query: 382 ---ENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEG 438
               + + WN MI   TQ+G   +A+ LF  M+++  KP+++T+  +L+AC   G ++ G
Sbjct: 163 MEERDGVCWNVMIDGYTQNGMPNEALVLFRRMLKAKAKPNEVTVLSVLSACGQLGALESG 222

Query: 439 LTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNAL 493
             +  S   + GI  N      L+++ ++ G  +      +K+  + D   WN++
Sbjct: 223 -RWVHSYIENNGIQFNVHVGTALVDMYSKCGSLEDARLVFDKID-DKDVVAWNSM 275


>gi|357483151|ref|XP_003611862.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355513197|gb|AES94820.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 663

 Score =  340 bits (873), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 169/468 (36%), Positives = 287/468 (61%), Gaps = 1/468 (0%)

Query: 123 NNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSIS 182
           N +L+ Y   G++  AR +FD+++ER +VSWN+MI GY+K G  EE +  ++ ++   + 
Sbjct: 173 NAILNIYVACGLITSARRVFDDISERTLVSWNSMINGYSKMGRSEEAVLMFREMQEVGLE 232

Query: 183 CNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRL 242
            + F+  G+L++  K     L R VH  ++VTG   + +++++++D YAKCG L  A+ +
Sbjct: 233 PDVFTLVGLLSVSTKHGNFDLGRFVHLHMVVTGIEIDSIVTNALMDMYAKCGNLKCAKSV 292

Query: 243 FDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKAL 302
           FD+   +DV++WT M++ YA  G ++ A + FN+MP KN VSW ++I  + + GL  +A+
Sbjct: 293 FDQMLDKDVVSWTCMINAYANHGLIDCALEFFNQMPGKNVVSWNSIIWCHVQEGLYAEAV 352

Query: 303 ELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMY 362
           +LF RM    +  N  T  + L +C+ +  L  GKQ H ++   N   +  + +++IDMY
Sbjct: 353 DLFYRMCDSGVMANDTTLVAILSSCSHMGDLALGKQAHSYIFDNNITLSATLCNAIIDMY 412

Query: 363 SKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITL 422
           +KCG L     VF     ++N++ WN +I AL  HGY ++AI +F  M  S V PD+IT 
Sbjct: 413 AKCGALQTAMDVF-FGMPEKNAVSWNVIIGALALHGYGKEAIEMFEKMQASGVCPDEITF 471

Query: 423 AVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMP 482
             +L+AC+HSGLV  G  YFE M    GI P+ EH+AC+++LL + G   + ++ ++KMP
Sbjct: 472 TGLLSACSHSGLVDTGQHYFEIMNLTFGISPDVEHYACMVDLLGRRGLLGEAISLIKKMP 531

Query: 483 YEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEK 542
            + D  +W+AL G CR +GN+ +G++++ QL++    +S  + LLS++YS   +   ++ 
Sbjct: 532 VKPDVVVWSALLGACRTYGNLAIGKQIMKQLLELGRYNSGLYVLLSNMYSESQRWDDMKN 591

Query: 543 VRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQL 590
           + +++++   KK +AIS+IEI+   + F V D  H     +YS+L QL
Sbjct: 592 IWKILDQNGIKKCRAISFIEIDGCCYQFMVDDKRHGASTSIYSMLGQL 639



 Score =  141 bits (356), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 129/517 (24%), Positives = 226/517 (43%), Gaps = 86/517 (16%)

Query: 51  PAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKV 110
           PA+ ++F    C  +++ ++ K +     L + K+PT    ++LI    +C S    + V
Sbjct: 9   PAKAVSF----CIHTET-QISKTI-----LQELKSPTHQTLHYLID---QCISLKQLKHV 55

Query: 111 FDKIPVKNL----FSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAV 166
             +I +  L     +   ++S    L  +++A  LFD + + +   +N +I GY+ S   
Sbjct: 56  HAQIILHGLATQVLTLGKLVSSSVQLRDLRYAHKLFDQIPQPNKFMFNHLIKGYSNSSDP 115

Query: 167 EEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSI 226
            + L  Y+ +    I  N+F+   +L  C       L   VH Q    G  S+  + ++I
Sbjct: 116 IKSLLLYRRMVCDGILPNQFTIPFVLKACAAKSCYWLGVCVHAQSFKLGMGSHACVQNAI 175

Query: 227 VDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWT 286
           ++ Y  CG ++ ARR+FD+   R +++W +M++GY+K+G  E A  +F EM E       
Sbjct: 176 LNIYVACGLITSARRVFDDISERTLVSWNSMINGYSKMGRSEEAVLMFREMQE------- 228

Query: 287 TLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRT 346
                     +G +  ++FT + +L +      F               G+ VH  ++ T
Sbjct: 229 ----------VGLEP-DVFTLVGLLSVSTKHGNFDL-------------GRFVHLHMVVT 264

Query: 347 NFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKE------------------------ 382
               ++IV ++L+DMY+KCG L   + VFD   +K+                        
Sbjct: 265 GIEIDSIVTNALMDMYAKCGNLKCAKSVFDQMLDKDVVSWTCMINAYANHGLIDCALEFF 324

Query: 383 ------NSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQ 436
                 N + WN++I    Q G   +A+ LF+ M  S V  +  TL  IL++C+H G + 
Sbjct: 325 NQMPGKNVVSWNSIIWCHVQEGLYAEAVDLFYRMCDSGVMANDTTLVAILSSCSHMGDLA 384

Query: 437 EGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGV 496
            G     S   D  I  +      +I++ A+ G     M+    MP E ++  WN + G 
Sbjct: 385 LG-KQAHSYIFDNNITLSATLCNAIIDMYAKCGALQTAMDVFFGMP-EKNAVSWNVIIGA 442

Query: 497 CRIHG----NIDMGRKVVDQLIDQNPQSSATHGLLSS 529
             +HG     I+M  K+  Q     P      GLLS+
Sbjct: 443 LALHGYGKEAIEMFEKM--QASGVCPDEITFTGLLSA 477



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 63/256 (24%), Positives = 117/256 (45%), Gaps = 15/256 (5%)

Query: 28  ISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPT 87
           + +G  +EA+     +   G+     TL  IL  C+    L LGK+ H ++      T +
Sbjct: 343 VQEGLYAEAVDLFYRMCDSGVMANDTTLVAILSSCSHMGDLALGKQAHSYI-FDNNITLS 401

Query: 88  TFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAE 147
             L N +I MY KCG+   A  VF  +P KN  S+N ++   A  G  K A  +F+ M  
Sbjct: 402 ATLCNAIIDMYAKCGALQTAMDVFFGMPEKNAVSWNVIIGALALHGYGKEAIEMFEKMQA 461

Query: 148 R----DVVSWNTMIIGYAKSGAVEEGLKFYKVLR-RFSISCNEFSFAGILTICVKLEELK 202
                D +++  ++   + SG V+ G  +++++   F IS +   +A ++ +   L    
Sbjct: 462 SGVCPDEITFTGLLSACSHSGLVDTGQHYFEIMNLTFGISPDVEHYACMVDL---LGRRG 518

Query: 203 LTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSG-Y 261
           L  +    +       +VV+ S+++ A    G L+  +++      + +L      SG Y
Sbjct: 519 LLGEAISLIKKMPVKPDVVVWSALLGACRTYGNLAIGKQIM-----KQLLELGRYNSGLY 573

Query: 262 AKLGDMESASKLFNEM 277
             L +M S S+ +++M
Sbjct: 574 VLLSNMYSESQRWDDM 589


>gi|125539877|gb|EAY86272.1| hypothetical protein OsI_07642 [Oryza sativa Indica Group]
          Length = 596

 Score =  340 bits (872), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 188/556 (33%), Positives = 309/556 (55%), Gaps = 18/556 (3%)

Query: 54  TLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDK 113
            LA + +  +     +LG  VH  L  T   T  T LSN L+++Y    +   +   FD 
Sbjct: 31  VLALLERAISAGDVRRLGAAVHALLVKTA-LTHHTLLSNRLVALYALLPTPAASLAAFDD 89

Query: 114 IPVKNLFSYNNMLSGYA-NLGMMKHARNLFDNM--AERDVVSWNTMIIGYAKSGAVEEGL 170
           +P KN  SYN++L+  A   G +  A  L D M  A R+VVS+NT+I   A+ G   E L
Sbjct: 90  LPHKNAHSYNSLLAALARGRGTLPDALRLLDGMPPASRNVVSYNTVISSLARHGRESEAL 149

Query: 171 KFYKVLRR------FSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISS 224
           + +  L R        ++ + F+     + C  L + +  R++HG V+V+G    V++++
Sbjct: 150 RVFAQLARDRGLGQQQVAIDRFTVVSAASACAGLRDARHLRELHGAVVVSGMEVTVIMAN 209

Query: 225 SIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVS 284
           ++VDAY+K G + DAR LFD+   RD ++WT+M++GY +   ++ A ++F+ MP ++ ++
Sbjct: 210 AMVDAYSKAGRVEDARGLFDQMTIRDSVSWTSMIAGYCRASMLDDAVQVFDMMPAQDAIA 269

Query: 285 WTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLI 344
           WT LI+G+ +NG  + ALELF RM    + P      SCL ACA +  +  GK+VHGF++
Sbjct: 270 WTALISGHEQNGEEEIALELFERMTGEGVVPTPFALVSCLGACAKVGLVARGKEVHGFIL 329

Query: 345 RTNFRS---NTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDE 401
           R +  S   N  + ++LIDMYSKCG +     VFD    + + + WN+M++  + +G  +
Sbjct: 330 RRSIGSDPFNVFIHNALIDMYSKCGDMVAAMAVFDRMLER-DIISWNSMVTGFSHNGQGK 388

Query: 402 QAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACL 461
           Q++ +F  M++  V+P  +T   +L AC+H+GLV +G    ESM  D G+ P  EH+A  
Sbjct: 389 QSLAVFERMLKDEVQPTYVTFLAVLTACSHAGLVSDGRRILESM-QDHGVEPRAEHYAAF 447

Query: 462 IELLA---QAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNP 518
           I+ L    Q   + + +  L        +  W AL G C +HGNI++  +V + L    P
Sbjct: 448 IDALGRNHQLEEASEFIKGLSSKIGLGTTGSWGALLGACHVHGNIEIAEEVAEALFQLEP 507

Query: 519 QSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHP 578
           ++S  + +LS+IYSA G+     +VR L+  +  +K+QA SWIE++   H F   D+ H 
Sbjct: 508 ENSGRYVMLSNIYSAAGQWDDARQVRALMKGKGLRKDQAYSWIEVQRAKHMFVADDTSHH 567

Query: 579 MRDVLYSVLEQLAGQM 594
             + +Y +L++L   M
Sbjct: 568 EANEIYEMLDKLFHHM 583


>gi|115446683|ref|NP_001047121.1| Os02g0555100 [Oryza sativa Japonica Group]
 gi|113536652|dbj|BAF09035.1| Os02g0555100 [Oryza sativa Japonica Group]
          Length = 596

 Score =  339 bits (870), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 187/556 (33%), Positives = 309/556 (55%), Gaps = 18/556 (3%)

Query: 54  TLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDK 113
            LA + +  +     +LG  VH  L  T   T  T LSN L+++Y    +   +   FD 
Sbjct: 31  VLALLERAISAGDVRRLGAAVHALLVKTA-LTHHTLLSNRLVALYALLPTPAASLAAFDD 89

Query: 114 IPVKNLFSYNNMLSGYA-NLGMMKHARNLFDNM--AERDVVSWNTMIIGYAKSGAVEEGL 170
           +P KN  SYN++L+  A   G +  A  L D M  A R+VVS+NT+I   A+ G   E L
Sbjct: 90  LPHKNAHSYNSLLAALARGRGTLPDALRLLDGMPPASRNVVSYNTVISSLARHGRESEAL 149

Query: 171 KFYKVLRR------FSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISS 224
           + +  L R        ++ + F+     + C  L + +  R++HG V+V+G    V++++
Sbjct: 150 RVFAQLARDRGLGQQQVAIDRFTVVSAASACAGLRDARHLRELHGAVVVSGMEVTVIMAN 209

Query: 225 SIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVS 284
           ++VDAY+K G + DAR +FD+   RD ++WT+M++GY +   ++ A ++F+ MP ++ ++
Sbjct: 210 AMVDAYSKAGRVEDARGVFDQMTIRDSVSWTSMIAGYCRASMLDDAVQVFDMMPAQDAIA 269

Query: 285 WTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLI 344
           WT LI+G+ +NG  + ALELF RM    + P      SCL ACA +  +  GK+VHGF++
Sbjct: 270 WTALISGHEQNGEEEIALELFERMTGEGVVPTPFALVSCLGACAKVGLVARGKEVHGFIL 329

Query: 345 RTNFRS---NTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDE 401
           R +  S   N  + ++LIDMYSKCG +     VFD    + + + WN+M++  + +G  +
Sbjct: 330 RRSIGSDPFNVFIHNALIDMYSKCGDMVAAMAVFDRMLER-DIISWNSMVTGFSHNGQGK 388

Query: 402 QAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACL 461
           Q++ +F  M++  V+P  +T   +L AC+H+GLV +G    ESM  D G+ P  EH+A  
Sbjct: 389 QSLAVFERMLKDEVQPTYVTFLAVLTACSHAGLVSDGRRILESM-QDHGVEPRAEHYAAF 447

Query: 462 IELLA---QAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNP 518
           I+ L    Q   + + +  L        +  W AL G C +HGNI++  +V + L    P
Sbjct: 448 IDALGRNRQLEEASEFIKGLSSKIGLGTTGSWGALLGACHVHGNIEIAEEVAEALFQLEP 507

Query: 519 QSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHP 578
           ++S  + +LS+IYSA G+     +VR L+  +  +K+QA SWIE++   H F   D+ H 
Sbjct: 508 ENSGRYVMLSNIYSAAGQWDDARQVRALMKGKGLRKDQAYSWIEVQRAKHMFVADDTSHH 567

Query: 579 MRDVLYSVLEQLAGQM 594
             + +Y +L++L   M
Sbjct: 568 EANEIYEMLDKLFHHM 583


>gi|125582503|gb|EAZ23434.1| hypothetical protein OsJ_07125 [Oryza sativa Japonica Group]
          Length = 596

 Score =  339 bits (870), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 187/556 (33%), Positives = 309/556 (55%), Gaps = 18/556 (3%)

Query: 54  TLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDK 113
            LA + +  +     +LG  VH  L  T   T  T LSN L+++Y    +   +   FD 
Sbjct: 31  VLALLERAISAGDVRRLGAAVHALLVKTA-LTHHTLLSNRLVALYALLPTPAASLAAFDD 89

Query: 114 IPVKNLFSYNNMLSGYA-NLGMMKHARNLFDNM--AERDVVSWNTMIIGYAKSGAVEEGL 170
           +P KN  SYN++L+  A   G +  A  L D M  A R+VVS+NT+I   A+ G   E L
Sbjct: 90  LPHKNAHSYNSLLAALARGRGTLPDALRLLDGMPPASRNVVSYNTVISSLARHGRESEAL 149

Query: 171 KFYKVLRR------FSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISS 224
           + +  L R        ++ + F+     + C  L + +  R++HG V+V+G    V++++
Sbjct: 150 RVFAQLARDRGLGQQQVAIDRFTVVSAASACAGLRDARHLRELHGAVVVSGMEVTVIMAN 209

Query: 225 SIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVS 284
           ++VDAY+K G + DAR +FD+   RD ++WT+M++GY +   ++ A ++F+ MP ++ ++
Sbjct: 210 AMVDAYSKAGRVEDARGVFDQMTIRDSVSWTSMIAGYCRASMLDDAVQVFDMMPAQDAIA 269

Query: 285 WTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLI 344
           WT LI+G+ +NG  + ALELF RM    + P      SCL ACA +  +  GK+VHGF++
Sbjct: 270 WTALISGHEQNGEEEIALELFERMTGEGVVPTPFALVSCLGACAKVGLVARGKEVHGFIL 329

Query: 345 RTNFRS---NTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDE 401
           R +  S   N  + ++LIDMYSKCG +     VFD    + + + WN+M++  + +G  +
Sbjct: 330 RRSIGSDPFNVFIHNALIDMYSKCGDMVAAMAVFDRMLER-DIISWNSMVTGFSHNGQGK 388

Query: 402 QAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACL 461
           Q++ +F  M++  V+P  +T   +L AC+H+GLV +G    ESM  D G+ P  EH+A  
Sbjct: 389 QSLAVFERMLKDEVQPTYVTFLAVLTACSHAGLVSDGRRILESM-QDHGVEPRAEHYAAF 447

Query: 462 IELLA---QAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNP 518
           I+ L    Q   + + +  L        +  W AL G C +HGNI++  +V + L    P
Sbjct: 448 IDALGRNRQLEEASEFIKGLSSKIGLGTTGSWGALLGACHVHGNIEIAEEVAEALFQLEP 507

Query: 519 QSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHP 578
           ++S  + +LS+IYSA G+     +VR L+  +  +K+QA SWIE++   H F   D+ H 
Sbjct: 508 ENSGRYVMLSNIYSAAGQWDDARQVRALMKGKGLRKDQAYSWIEVQRAKHMFVADDTSHH 567

Query: 579 MRDVLYSVLEQLAGQM 594
             + +Y +L++L   M
Sbjct: 568 EANEIYEMLDKLFHHM 583


>gi|449464596|ref|XP_004150015.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
 gi|449529868|ref|XP_004171920.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 734

 Score =  339 bits (870), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 185/548 (33%), Positives = 298/548 (54%), Gaps = 33/548 (6%)

Query: 47  GIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVD 106
           G+   + T  F+L+ CA+  S   GK++H H+ L        F+   LI+MY + G   +
Sbjct: 124 GVEPNSYTFPFLLKSCAKLASAHEGKQIHAHV-LKLGFVSDVFIHTSLINMYAQSGEMNN 182

Query: 107 ARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAV 166
           A+ VFD+   ++  S+  +++GYA  G M  AR LFD M  +DVVSWN MI GYA+ G  
Sbjct: 183 AQLVFDQSNFRDAISFTALIAGYALWGYMDRARQLFDEMPVKDVVSWNAMIAGYAQMGRS 242

Query: 167 EEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSI 226
           +E L  ++ +R+ ++  NE +   +L+ C +   L L   +   +   G  SN+ + +++
Sbjct: 243 KEALLLFEDMRKANVPPNESTIVSVLSACAQSNALDLGNSMRSWIEDRGLCSNLKLVNAL 302

Query: 227 VDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWT 286
           +D Y+KCG+L  AR LFD+   RDV++W  M+ GY                         
Sbjct: 303 IDMYSKCGDLQTARELFDDMLERDVISWNVMIGGY------------------------- 337

Query: 287 TLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRT 346
           T +  Y      ++AL LF  M+   + P + TF S L +CA + ++  GK +H ++ + 
Sbjct: 338 THMCSY------KEALALFREMLASGVEPTEITFLSILPSCAHLGAIDLGKWIHAYINKN 391

Query: 347 NFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRL 406
               +T + +SLID+Y+KCG +   RQVFD    K  +  WN MI  L  HG  ++A  L
Sbjct: 392 FNSVSTSLSTSLIDLYAKCGNIVAARQVFDGMKIKSLAS-WNAMICGLAMHGQADKAFEL 450

Query: 407 FHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLA 466
           F  M    ++P++IT   IL+AC H+GLV  G  +F SM  D  I P  +H+ C+I+LL 
Sbjct: 451 FSKMSSDGIEPNEITFVGILSACKHAGLVDLGQQFFSSMVQDYKISPKSQHYGCMIDLLG 510

Query: 467 QAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGL 526
           +AG  ++  + L+ M  + D  +W +L G CR HG +++G  V ++L +  P +   + L
Sbjct: 511 RAGLFEEAESLLQNMEVKPDGAIWGSLLGACRDHGRVELGELVAERLFELEPDNPGAYVL 570

Query: 527 LSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSV 586
           LS+IY+  GK   V ++R  +N+R  KK    + IE++N VH F V D +HP  + +Y +
Sbjct: 571 LSNIYAGAGKWDDVARIRTRLNDRGMKKVPGCTTIEVDNVVHEFLVGDKVHPQSEDIYRM 630

Query: 587 LEQLAGQM 594
           LE++  Q+
Sbjct: 631 LEEVDEQL 638



 Score =  209 bits (532), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 135/478 (28%), Positives = 240/478 (50%), Gaps = 43/478 (8%)

Query: 119 LFSYNNML--SGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVL 176
           LF+ + ++  S  +  G + +A +LF+++ E ++  WN+MI G + S +    L F+  +
Sbjct: 61  LFALSKLIEFSAVSRSGDISYAISLFNSIEEPNLFIWNSMIRGLSMSLSPALALVFFVRM 120

Query: 177 RRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGEL 236
               +  N ++F  +L  C KL      +Q+H  VL  GF+S+V I +S+++ YA+ GE+
Sbjct: 121 IYSGVEPNSYTFPFLLKSCAKLASAHEGKQIHAHVLKLGFVSDVFIHTSLINMYAQSGEM 180

Query: 237 SDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNG 296
           ++A+ +FD+++ RD +++T +++GYA  G M+ A +LF+EMP K+ VSW  +IAGY + G
Sbjct: 181 NNAQLVFDQSNFRDAISFTALIAGYALWGYMDRARQLFDEMPVKDVVSWNAMIAGYAQMG 240

Query: 297 LGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMS 356
             ++AL LF  M    + PN+ T  S L ACA   +L  G  +  ++      SN  +++
Sbjct: 241 RSKEALLLFEDMRKANVPPNESTIVSVLSACAQSNALDLGNSMRSWIEDRGLCSNLKLVN 300

Query: 357 SLIDMYSKCGCLNDGRQVFDLTDNKENSML-WNTMISALTQHGYDEQAIRLFHDMVRSSV 415
           +LIDMYSKCG L   R++FD  D  E  ++ WN MI   T     ++A+ LF +M+ S V
Sbjct: 301 ALIDMYSKCGDLQTARELFD--DMLERDVISWNVMIGGYTHMCSYKEALALFREMLASGV 358

Query: 416 KPDKITLAVILNACTHSGLVQEG-----------------------------------LT 440
           +P +IT   IL +C H G +  G                                     
Sbjct: 359 EPTEITFLSILPSCAHLGAIDLGKWIHAYINKNFNSVSTSLSTSLIDLYAKCGNIVAARQ 418

Query: 441 YFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIH 500
            F+ M   +  + +     C + +  QA  + +L +++     E +   +  +   C+  
Sbjct: 419 VFDGMK--IKSLASWNAMICGLAMHGQADKAFELFSKMSSDGIEPNEITFVGILSACKHA 476

Query: 501 GNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAI 558
           G +D+G++    ++ Q+ + S        +   LG+  L E+   L+   + K + AI
Sbjct: 477 GLVDLGQQFFSSMV-QDYKISPKSQHYGCMIDLLGRAGLFEEAESLLQNMEVKPDGAI 533



 Score =  112 bits (281), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 81/337 (24%), Positives = 151/337 (44%), Gaps = 67/337 (19%)

Query: 192 LTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVD--AYAKCGELSDARRLFDETDAR 249
           L +  K + ++  +Q+H  ++ TG  + +   S +++  A ++ G++S A  LF+  +  
Sbjct: 33  LKLLSKCQSIRTFKQIHAHIIKTGLHNTLFALSKLIEFSAVSRSGDISYAISLFNSIEEP 92

Query: 250 DVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMM 309
           ++  W +M+ G +    M  +  L                           AL  F RM+
Sbjct: 93  NLFIWNSMIRGLS----MSLSPAL---------------------------ALVFFVRMI 121

Query: 310 ILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLN 369
              + PN +TF   L +CA + S   GKQ+H  +++  F S+  + +SLI+MY++ G +N
Sbjct: 122 YSGVEPNSYTFPFLLKSCAKLASAHEGKQIHAHVLKLGFVSDVFIHTSLINMYAQSGEMN 181

Query: 370 DGRQVFDLTDNKE------------------------------NSMLWNTMISALTQHGY 399
           + + VFD ++ ++                              + + WN MI+   Q G 
Sbjct: 182 NAQLVFDQSNFRDAISFTALIAGYALWGYMDRARQLFDEMPVKDVVSWNAMIAGYAQMGR 241

Query: 400 DEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHA 459
            ++A+ LF DM +++V P++ T+  +L+AC  S  +  G     S   D G+  N +   
Sbjct: 242 SKEALLLFEDMRKANVPPNESTIVSVLSACAQSNALDLG-NSMRSWIEDRGLCSNLKLVN 300

Query: 460 CLIELLAQAGCSD-QLMNQLEKMPYEHDSYLWNALHG 495
            LI++ ++  C D Q   +L     E D   WN + G
Sbjct: 301 ALIDMYSK--CGDLQTARELFDDMLERDVISWNVMIG 335



 Score = 98.6 bits (244), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 94/415 (22%), Positives = 165/415 (39%), Gaps = 77/415 (18%)

Query: 18  NCLIQSFLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLH 77
           N +I  +  +   G+  EA+   + + +  +     T+  +L  CA+S +L LG  +   
Sbjct: 230 NAMIAGYAQM---GRSKEALLLFEDMRKANVPPNESTIVSVLSACAQSNALDLGNSMRSW 286

Query: 78  LKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKH 137
           ++  +       L N LI MY KCG    AR++FD +  +++ S+N M+ GY ++   K 
Sbjct: 287 IE-DRGLCSNLKLVNALIDMYSKCGDLQTARELFDDMLERDVISWNVMIGGYTHMCSYKE 345

Query: 138 ARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVK 197
           A  LF  M                 +  VE                 E +F  IL  C  
Sbjct: 346 ALALFREML----------------ASGVEP---------------TEITFLSILPSCAH 374

Query: 198 LEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTM 257
           L  + L + +H  +       +  +S+S++D YAKCG +  AR++FD    + + +W  M
Sbjct: 375 LGAIDLGKWIHAYINKNFNSVSTSLSTSLIDLYAKCGNIVAARQVFDGMKIKSLASWNAM 434

Query: 258 VSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQ 317
           + G A  G  + A +LF++M                                   I PN+
Sbjct: 435 ICGLAMHGQADKAFELFSKMSSDG-------------------------------IEPNE 463

Query: 318 HTFSSCLCACASIVSLKHGKQVHGFLIRT-NFRSNTIVMSSLIDMYSKCGCLNDGRQVFD 376
            TF   L AC     +  G+Q    +++       +     +ID+  + G   +   +  
Sbjct: 464 ITFVGILSACKHAGLVDLGQQFFSSMVQDYKISPKSQHYGCMIDLLGRAGLFEEAESLLQ 523

Query: 377 LTDNKENSMLWNTMISALTQHGYDE----QAIRLFHDMVRSSVKPDKITLAVILN 427
             + K +  +W +++ A   HG  E     A RLF       ++PD     V+L+
Sbjct: 524 NMEVKPDGAIWGSLLGACRDHGRVELGELVAERLFE------LEPDNPGAYVLLS 572



 Score = 59.7 bits (143), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 48/199 (24%), Positives = 89/199 (44%), Gaps = 8/199 (4%)

Query: 317 QHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDM--YSKCGCLNDGRQV 374
           +H     L  C SI + K   Q+H  +I+T   +    +S LI+    S+ G ++    +
Sbjct: 29  EHPSLKLLSKCQSIRTFK---QIHAHIIKTGLHNTLFALSKLIEFSAVSRSGDISYAISL 85

Query: 375 FDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGL 434
           F+  + + N  +WN+MI  L+       A+  F  M+ S V+P+  T   +L +C     
Sbjct: 86  FNSIE-EPNLFIWNSMIRGLSMSLSPALALVFFVRMIYSGVEPNSYTFPFLLKSCAKLAS 144

Query: 435 VQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALH 494
             EG     +    LG + +   H  LI + AQ+G  +      ++  +  D+  + AL 
Sbjct: 145 AHEG-KQIHAHVLKLGFVSDVFIHTSLINMYAQSGEMNNAQLVFDQSNFR-DAISFTALI 202

Query: 495 GVCRIHGNIDMGRKVVDQL 513
               + G +D  R++ D++
Sbjct: 203 AGYALWGYMDRARQLFDEM 221


>gi|302768267|ref|XP_002967553.1| hypothetical protein SELMODRAFT_88824 [Selaginella moellendorffii]
 gi|300164291|gb|EFJ30900.1| hypothetical protein SELMODRAFT_88824 [Selaginella moellendorffii]
          Length = 670

 Score =  339 bits (869), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 184/570 (32%), Positives = 307/570 (53%), Gaps = 36/570 (6%)

Query: 29  SKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLH-LKLTQRKTPT 87
           S G+      S+ LL  R + L     A ++++C  + ++   +R+H H L L    +  
Sbjct: 37  SFGERESLHKSIQLLESRELELDPVGYAALIRRCGAANAISAARRLHSHILSLPHSNSQP 96

Query: 88  TFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAE 147
            FL+N LI MY KCG          ++P                     +AR LF++M  
Sbjct: 97  PFLANLLIEMYGKCG----------RLP---------------------YARELFESMPS 125

Query: 148 RDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLT--R 205
           R+V +W   +  ++ +G   E L F++ + +     +  +F+ IL    ++    +   R
Sbjct: 126 RNVHTWTVAMAAFSHNGCHSEALVFFRRMYQSGERPDRVTFSVILAAIAQMGAAAIDQGR 185

Query: 206 QVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLG 265
           ++H    ++G L NVV+ ++++  Y KCG L DAR  F+E   ++ +TW  M++ Y   G
Sbjct: 186 EIHRYARISGLLPNVVVGTAVISMYGKCGRLDDARAAFEELQWKNSVTWNAMMTNYKLDG 245

Query: 266 DMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMM-ILRIRPNQHTFSSCL 324
               A +LF EM + + V W  +IA Y ++G G++AL+L+  M     + P Q TF + +
Sbjct: 246 RDREALELFREMHDADSVCWNAMIAAYAQHGRGKQALDLYRSMHDTTDLAPKQGTFVTVI 305

Query: 325 CACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENS 384
             CA + +LK G+ +H  +  TNF +N +V ++L+ MY KCGCL++   VF     K+  
Sbjct: 306 DVCAELSALKQGRAIHARVRATNFDANLLVSNALVHMYGKCGCLDEALDVFHSMKLKDE- 364

Query: 385 MLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFES 444
           + WNT+IS+   HG+ +QA+ L+ +M    VKP ++T   +L+AC+H GLV +GL YF  
Sbjct: 365 ISWNTIISSYAYHGHSDQALLLYQEMDLQGVKPTEVTFVGLLSACSHGGLVADGLDYFYR 424

Query: 445 MTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNID 504
           M  D  I P+  H  C+I+LL + G   +    L+ MP + ++  W +L G C+ HG++ 
Sbjct: 425 MQDDHRIKPSVPHFGCIIDLLGRGGRLAEAELVLKSMPIQANAVQWMSLLGACKTHGDLK 484

Query: 505 MGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIE 564
            G +  DQ++D+ P +S  + LLS+IY+A G+ + VEK+R+++  R  KK    SWIEI 
Sbjct: 485 RGVRAADQVVDRVPWTSGGYVLLSNIYAAAGRWKDVEKIRKIMAARGVKKSPGKSWIEIG 544

Query: 565 NKVHAFSVSDSLHPMRDVLYSVLEQLAGQM 594
           + VH F   DS HP  + +Y  L ++  +M
Sbjct: 545 DVVHEFVSGDSSHPQGEEIYVELGKMVEEM 574


>gi|356513929|ref|XP_003525660.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Glycine max]
          Length = 736

 Score =  339 bits (869), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 199/584 (34%), Positives = 312/584 (53%), Gaps = 45/584 (7%)

Query: 16  PNNCLIQSFLSLISKGQLSEA-ISSLDLLAQ---RGIRLPAETLAFILQQCAESKSLKLG 71
           P N  I +  +LI    L+    SSL L +Q    G+   + T   + + CA+SK+    
Sbjct: 89  PPNIFIWN--TLIRAHSLTPTPTSSLHLFSQMLHSGLYPNSHTFPSLFKSCAKSKATHEA 146

Query: 72  KRVHLH-LKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYA 130
           K++H H LKL     P    S  LI MY + G    AR VFDK  +++  S+  +++GY 
Sbjct: 147 KQLHAHALKLALHLHPHVHTS--LIHMYSQVGELRHARLVFDKSTLRDAVSFTALITGYV 204

Query: 131 NLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAG 190
           + G +  AR LFD +  +DVVSWN MI GY +SG  EE L  +  ++   +S N+ +   
Sbjct: 205 SEGHVDDARRLFDEIPAKDVVSWNAMIAGYVQSGRFEEALACFTRMQEADVSPNQSTMVS 264

Query: 191 ILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARD 250
           +L+ C  L  L+L + +   V   GF  N+ + +++VD Y+KCGE+              
Sbjct: 265 VLSACGHLRSLELGKWIGSWVRDRGFGKNLQLVNALVDMYSKCGEIG------------- 311

Query: 251 VLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMI 310
                             +A KLF+ M +K+ + W T+I GY    L ++AL LF  M+ 
Sbjct: 312 ------------------TARKLFDGMEDKDVILWNTMIGGYCHLSLYEEALVLFEVMLR 353

Query: 311 LRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIR----TNFRSNTIVMSSLIDMYSKCG 366
             + PN  TF + L ACAS+ +L  GK VH ++ +    T   +N  + +S+I MY+KCG
Sbjct: 354 ENVTPNDVTFLAVLPACASLGALDLGKWVHAYIDKNLKGTGNVNNVSLWTSIIVMYAKCG 413

Query: 367 CLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVIL 426
           C+    QVF    ++  +  WN MIS L  +G+ E+A+ LF +M+    +PD IT   +L
Sbjct: 414 CVEVAEQVFRSMGSRSLAS-WNAMISGLAMNGHAERALGLFEEMINEGFQPDDITFVGVL 472

Query: 427 NACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHD 486
           +ACT +G V+ G  YF SM  D GI P  +H+ C+I+LLA++G  D+    +  M  E D
Sbjct: 473 SACTQAGFVELGHRYFSSMNKDYGISPKLQHYGCMIDLLARSGKFDEAKVLMGNMEMEPD 532

Query: 487 SYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQL 546
             +W +L   CRIHG ++ G  V ++L +  P++S  + LLS+IY+  G+   V K+R  
Sbjct: 533 GAIWGSLLNACRIHGQVEFGEYVAERLFELEPENSGAYVLLSNIYAGAGRWDDVAKIRTK 592

Query: 547 INERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQL 590
           +N++  KK    + IEI+  VH F V D  HP  + ++ +L+++
Sbjct: 593 LNDKGMKKVPGCTSIEIDGVVHEFLVGDKFHPQSENIFRMLDEV 636



 Score =  192 bits (489), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 127/470 (27%), Positives = 235/470 (50%), Gaps = 20/470 (4%)

Query: 80  LTQRKTPTTFLSNHL-ISMYFKCGSDVDARKVFDKIPVKN-----LFSYNNMLSGYANLG 133
           L     P   L NH  +++  KC  D+ + K    + +K+     LF+ + ++  +  L 
Sbjct: 13  LPSSDPPYKLLENHPHLNLLAKC-PDIPSLKQIHSLIIKSGLHNTLFAQSKLIE-FCALS 70

Query: 134 M---MKHARNLFDNMAER--DVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSF 188
               + +A +LF ++  +  ++  WNT+I  ++ +      L  +  +    +  N  +F
Sbjct: 71  PSRDLSYALSLFHSIHHQPPNIFIWNTLIRAHSLTPTPTSSLHLFSQMLHSGLYPNSHTF 130

Query: 189 AGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDA 248
             +   C K +     +Q+H   L      +  + +S++  Y++ GEL  AR +FD++  
Sbjct: 131 PSLFKSCAKSKATHEAKQLHAHALKLALHLHPHVHTSLIHMYSQVGELRHARLVFDKSTL 190

Query: 249 RDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRM 308
           RD +++T +++GY   G ++ A +LF+E+P K+ VSW  +IAGY ++G  ++AL  FTRM
Sbjct: 191 RDAVSFTALITGYVSEGHVDDARRLFDEIPAKDVVSWNAMIAGYVQSGRFEEALACFTRM 250

Query: 309 MILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCL 368
               + PNQ T  S L AC  + SL+ GK +  ++    F  N  ++++L+DMYSKCG +
Sbjct: 251 QEADVSPNQSTMVSVLSACGHLRSLELGKWIGSWVRDRGFGKNLQLVNALVDMYSKCGEI 310

Query: 369 NDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNA 428
              R++FD  ++K+  +LWNTMI         E+A+ LF  M+R +V P+ +T   +L A
Sbjct: 311 GTARKLFDGMEDKD-VILWNTMIGGYCHLSLYEEALVLFEVMLRENVTPNDVTFLAVLPA 369

Query: 429 CTHSGLVQEGL---TYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEH 485
           C   G +  G     Y +      G + N      +I + A+ GC  ++  Q+ +     
Sbjct: 370 CASLGALDLGKWVHAYIDKNLKGTGNVNNVSLWTSIIVMYAKCGCV-EVAEQVFRSMGSR 428

Query: 486 DSYLWNALHGVCRIHGNIDMGRKVVDQLIDQN--PQSSATHGLLSSIYSA 533
               WNA+     ++G+ +    + +++I++   P      G+LS+   A
Sbjct: 429 SLASWNAMISGLAMNGHAERALGLFEEMINEGFQPDDITFVGVLSACTQA 478


>gi|8778977|gb|AAF79892.1|AC022472_1 Contains similarity to an unknown protein F28A21.160 gi|7486269
           from Arabidopsis thaliana BAC F28A21 gi|T04867 and
           contains multiple PPR PF|01535 repeats. EST gb|AI999742
           comes from this gene. This gene may be cut off, partial
           [Arabidopsis thaliana]
          Length = 757

 Score =  338 bits (868), Expect = 4e-90,   Method: Compositional matrix adjust.
 Identities = 182/596 (30%), Positives = 325/596 (54%), Gaps = 16/596 (2%)

Query: 21  IQSFLSLI---SKGQL-SEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHL 76
           I SF SLI   +K +L +++I     +   G+   +  L  + + CAE  + K+GK++H 
Sbjct: 81  IYSFSSLIYALTKAKLFTQSIGVFSRMFSHGLIPDSHVLPNLFKVCAELSAFKVGKQIHC 140

Query: 77  HLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMK 136
            +          F+   +  MY +CG   DARKVFD++  K++ + + +L  YA  G ++
Sbjct: 141 -VSCVSGLDMDAFVQGSMFHMYMRCGRMGDARKVFDRMSDKDVVTCSALLCAYARKGCLE 199

Query: 137 HARNLFDNMA----ERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGIL 192
               +   M     E ++VSWN ++ G+ +SG  +E +  ++ +       ++ + + +L
Sbjct: 200 EVVRILSEMESSGIEANIVSWNGILSGFNRSGYHKEAVVMFQKIHHLGFCPDQVTVSSVL 259

Query: 193 TICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVL 252
                 E L + R +HG V+  G L +  + S+++D Y K G +     LF++ +  +  
Sbjct: 260 PSVGDSEMLNMGRLIHGYVIKQGLLKDKCVISAMIDMYGKSGHVYGIISLFNQFEMMEAG 319

Query: 253 TWTTMVSGYAKLGDMESASKLFNEMPEK----NPVSWTTLIAGYTRNGLGQKALELFTRM 308
                ++G ++ G ++ A ++F    E+    N VSWT++IAG  +NG   +ALELF  M
Sbjct: 320 VCNAYITGLSRNGLVDKALEMFELFKEQTMELNVVSWTSIIAGCAQNGKDIEALELFREM 379

Query: 309 MILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCL 368
            +  ++PN  T  S L AC +I +L HG+  HGF +R +   N  V S+LIDMY+KCG +
Sbjct: 380 QVAGVKPNHVTIPSMLPACGNIAALGHGRSTHGFAVRVHLLDNVHVGSALIDMYAKCGRI 439

Query: 369 NDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNA 428
           N  + VF++   K N + WN++++  + HG  ++ + +F  ++R+ +KPD I+   +L+A
Sbjct: 440 NLSQIVFNMMPTK-NLVCWNSLMNGFSMHGKAKEVMSIFESLMRTRLKPDFISFTSLLSA 498

Query: 429 CTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSY 488
           C   GL  EG  YF+ M+ + GI P  EH++C++ LL +AG   +  + +++MP+E DS 
Sbjct: 499 CGQVGLTDEGWKYFKMMSEEYGIKPRLEHYSCMVNLLGRAGKLQEAYDLIKEMPFEPDSC 558

Query: 489 LWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLIN 548
           +W AL   CR+  N+D+     ++L    P++  T+ LLS+IY+A G    V+ +R  + 
Sbjct: 559 VWGALLNSCRLQNNVDLAEIAAEKLFHLEPENPGTYVLLSNIYAAKGMWTEVDSIRNKME 618

Query: 549 ERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQMGEDA--PSLD 602
               KK    SWI+++N+V+     D  HP  D +   +++++ +M +    P+LD
Sbjct: 619 SLGLKKNPGCSWIQVKNRVYTLLAGDKSHPQIDQITEKMDEISKEMRKSGHRPNLD 674



 Score =  147 bits (371), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 95/419 (22%), Positives = 194/419 (46%), Gaps = 48/419 (11%)

Query: 125 MLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCN 184
           +++ Y+N      A  +  ++ +  + S++++I    K+    + +  +  +    +  +
Sbjct: 56  LIASYSNYNCFNDADLVLQSIPDPTIYSFSSLIYALTKAKLFTQSIGVFSRMFSHGLIPD 115

Query: 185 EFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFD 244
                 +  +C +L   K+ +Q+H    V+G   +  +  S+   Y +CG + DAR++FD
Sbjct: 116 SHVLPNLFKVCAELSAFKVGKQIHCVSCVSGLDMDAFVQGSMFHMYMRCGRMGDARKVFD 175

Query: 245 ETDARDVLTWTTMVSGYAKLGDMESASKLFNEMP----EKNPVSWTTLIAGYTRNGLGQK 300
               +DV+T + ++  YA+ G +E   ++ +EM     E N VSW  +++G+ R+G  ++
Sbjct: 176 RMSDKDVVTCSALLCAYARKGCLEEVVRILSEMESSGIEANIVSWNGILSGFNRSGYHKE 235

Query: 301 ALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLID 360
           A+ +F ++  L   P+Q T SS L +      L  G+ +HG++I+     +  V+S++ID
Sbjct: 236 AVVMFQKIHHLGFCPDQVTVSSVLPSVGDSEMLNMGRLIHGYVIKQGLLKDKCVISAMID 295

Query: 361 MYSKC-------------------------------GCLNDGRQVFDLTDNKE---NSML 386
           MY K                                G ++   ++F+L   +    N + 
Sbjct: 296 MYGKSGHVYGIISLFNQFEMMEAGVCNAYITGLSRNGLVDKALEMFELFKEQTMELNVVS 355

Query: 387 WNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMT 446
           W ++I+   Q+G D +A+ LF +M  + VKP+ +T+  +L AC +   +  G +     T
Sbjct: 356 WTSIIAGCAQNGKDIEALELFREMQVAGVKPNHVTIPSMLPACGNIAALGHGRS-----T 410

Query: 447 HDLGI----IPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHG 501
           H   +    + N    + LI++ A+ G  +        MP + +   WN+L     +HG
Sbjct: 411 HGFAVRVHLLDNVHVGSALIDMYAKCGRINLSQIVFNMMPTK-NLVCWNSLMNGFSMHG 468



 Score = 89.7 bits (221), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 81/377 (21%), Positives = 161/377 (42%), Gaps = 68/377 (18%)

Query: 204 TRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAK 263
           T Q H ++L +G  ++  IS+ ++ +Y+     +DA                        
Sbjct: 34  TTQAHARILKSGAQNDGYISAKLIASYSNYNCFNDA------------------------ 69

Query: 264 LGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSC 323
             D+     +   +P+    S+++LI   T+  L  +++ +F+RM    + P+ H   + 
Sbjct: 70  --DL-----VLQSIPDPTIYSFSSLIYALTKAKLFTQSIGVFSRMFSHGLIPDSHVLPNL 122

Query: 324 LCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKEN 383
              CA + + K GKQ+H     +    +  V  S+  MY +CG + D R+VFD   +K+ 
Sbjct: 123 FKVCAELSAFKVGKQIHCVSCVSGLDMDAFVQGSMFHMYMRCGRMGDARKVFDRMSDKD- 181

Query: 384 SMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFE 443
            +  + ++ A  + G  E+ +R+  +M  S ++ + ++   IL+    SG  +E +  F+
Sbjct: 182 VVTCSALLCAYARKGCLEEVVRILSEMESSGIEANIVSWNGILSGFNRSGYHKEAVVMFQ 241

Query: 444 SMTHDLGIIPNQEHHACLIELLAQAGCSDQL-MNQLEKMPYEHDSYLWNALHGVCRIHGN 502
            + H LG  P+Q     +  +L   G S+ L M +L              +HG     G 
Sbjct: 242 KI-HHLGFCPDQ---VTVSSVLPSVGDSEMLNMGRL--------------IHGYVIKQGL 283

Query: 503 IDMGRKVVDQLIDQNPQSSATHGLLS--------------SIYSALGKGRLVEKVRQLIN 548
           +   + V+  +ID   +S   +G++S              +  + L +  LV+K  ++  
Sbjct: 284 LK-DKCVISAMIDMYGKSGHVYGIISLFNQFEMMEAGVCNAYITGLSRNGLVDKALEMFE 342

Query: 549 --ERQFKKEQAISWIEI 563
             + Q  +   +SW  I
Sbjct: 343 LFKEQTMELNVVSWTSI 359


>gi|15223802|ref|NP_173449.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806503|sp|Q9LNU6.2|PPR53_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g20230
 gi|332191832|gb|AEE29953.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 760

 Score =  338 bits (868), Expect = 4e-90,   Method: Compositional matrix adjust.
 Identities = 182/596 (30%), Positives = 325/596 (54%), Gaps = 16/596 (2%)

Query: 21  IQSFLSLI---SKGQL-SEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHL 76
           I SF SLI   +K +L +++I     +   G+   +  L  + + CAE  + K+GK++H 
Sbjct: 81  IYSFSSLIYALTKAKLFTQSIGVFSRMFSHGLIPDSHVLPNLFKVCAELSAFKVGKQIHC 140

Query: 77  HLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMK 136
            +          F+   +  MY +CG   DARKVFD++  K++ + + +L  YA  G ++
Sbjct: 141 -VSCVSGLDMDAFVQGSMFHMYMRCGRMGDARKVFDRMSDKDVVTCSALLCAYARKGCLE 199

Query: 137 HARNLFDNMA----ERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGIL 192
               +   M     E ++VSWN ++ G+ +SG  +E +  ++ +       ++ + + +L
Sbjct: 200 EVVRILSEMESSGIEANIVSWNGILSGFNRSGYHKEAVVMFQKIHHLGFCPDQVTVSSVL 259

Query: 193 TICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVL 252
                 E L + R +HG V+  G L +  + S+++D Y K G +     LF++ +  +  
Sbjct: 260 PSVGDSEMLNMGRLIHGYVIKQGLLKDKCVISAMIDMYGKSGHVYGIISLFNQFEMMEAG 319

Query: 253 TWTTMVSGYAKLGDMESASKLFNEMPEK----NPVSWTTLIAGYTRNGLGQKALELFTRM 308
                ++G ++ G ++ A ++F    E+    N VSWT++IAG  +NG   +ALELF  M
Sbjct: 320 VCNAYITGLSRNGLVDKALEMFELFKEQTMELNVVSWTSIIAGCAQNGKDIEALELFREM 379

Query: 309 MILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCL 368
            +  ++PN  T  S L AC +I +L HG+  HGF +R +   N  V S+LIDMY+KCG +
Sbjct: 380 QVAGVKPNHVTIPSMLPACGNIAALGHGRSTHGFAVRVHLLDNVHVGSALIDMYAKCGRI 439

Query: 369 NDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNA 428
           N  + VF++   K N + WN++++  + HG  ++ + +F  ++R+ +KPD I+   +L+A
Sbjct: 440 NLSQIVFNMMPTK-NLVCWNSLMNGFSMHGKAKEVMSIFESLMRTRLKPDFISFTSLLSA 498

Query: 429 CTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSY 488
           C   GL  EG  YF+ M+ + GI P  EH++C++ LL +AG   +  + +++MP+E DS 
Sbjct: 499 CGQVGLTDEGWKYFKMMSEEYGIKPRLEHYSCMVNLLGRAGKLQEAYDLIKEMPFEPDSC 558

Query: 489 LWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLIN 548
           +W AL   CR+  N+D+     ++L    P++  T+ LLS+IY+A G    V+ +R  + 
Sbjct: 559 VWGALLNSCRLQNNVDLAEIAAEKLFHLEPENPGTYVLLSNIYAAKGMWTEVDSIRNKME 618

Query: 549 ERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQMGEDA--PSLD 602
               KK    SWI+++N+V+     D  HP  D +   +++++ +M +    P+LD
Sbjct: 619 SLGLKKNPGCSWIQVKNRVYTLLAGDKSHPQIDQITEKMDEISKEMRKSGHRPNLD 674



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 95/419 (22%), Positives = 194/419 (46%), Gaps = 48/419 (11%)

Query: 125 MLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCN 184
           +++ Y+N      A  +  ++ +  + S++++I    K+    + +  +  +    +  +
Sbjct: 56  LIASYSNYNCFNDADLVLQSIPDPTIYSFSSLIYALTKAKLFTQSIGVFSRMFSHGLIPD 115

Query: 185 EFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFD 244
                 +  +C +L   K+ +Q+H    V+G   +  +  S+   Y +CG + DAR++FD
Sbjct: 116 SHVLPNLFKVCAELSAFKVGKQIHCVSCVSGLDMDAFVQGSMFHMYMRCGRMGDARKVFD 175

Query: 245 ETDARDVLTWTTMVSGYAKLGDMESASKLFNEMP----EKNPVSWTTLIAGYTRNGLGQK 300
               +DV+T + ++  YA+ G +E   ++ +EM     E N VSW  +++G+ R+G  ++
Sbjct: 176 RMSDKDVVTCSALLCAYARKGCLEEVVRILSEMESSGIEANIVSWNGILSGFNRSGYHKE 235

Query: 301 ALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLID 360
           A+ +F ++  L   P+Q T SS L +      L  G+ +HG++I+     +  V+S++ID
Sbjct: 236 AVVMFQKIHHLGFCPDQVTVSSVLPSVGDSEMLNMGRLIHGYVIKQGLLKDKCVISAMID 295

Query: 361 MYSKC-------------------------------GCLNDGRQVFDLTDNKE---NSML 386
           MY K                                G ++   ++F+L   +    N + 
Sbjct: 296 MYGKSGHVYGIISLFNQFEMMEAGVCNAYITGLSRNGLVDKALEMFELFKEQTMELNVVS 355

Query: 387 WNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMT 446
           W ++I+   Q+G D +A+ LF +M  + VKP+ +T+  +L AC +   +  G +     T
Sbjct: 356 WTSIIAGCAQNGKDIEALELFREMQVAGVKPNHVTIPSMLPACGNIAALGHGRS-----T 410

Query: 447 HDLGI----IPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHG 501
           H   +    + N    + LI++ A+ G  +        MP + +   WN+L     +HG
Sbjct: 411 HGFAVRVHLLDNVHVGSALIDMYAKCGRINLSQIVFNMMPTK-NLVCWNSLMNGFSMHG 468



 Score = 89.4 bits (220), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 81/377 (21%), Positives = 161/377 (42%), Gaps = 68/377 (18%)

Query: 204 TRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAK 263
           T Q H ++L +G  ++  IS+ ++ +Y+     +DA                        
Sbjct: 34  TTQAHARILKSGAQNDGYISAKLIASYSNYNCFNDA------------------------ 69

Query: 264 LGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSC 323
             D+     +   +P+    S+++LI   T+  L  +++ +F+RM    + P+ H   + 
Sbjct: 70  --DL-----VLQSIPDPTIYSFSSLIYALTKAKLFTQSIGVFSRMFSHGLIPDSHVLPNL 122

Query: 324 LCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKEN 383
              CA + + K GKQ+H     +    +  V  S+  MY +CG + D R+VFD   +K+ 
Sbjct: 123 FKVCAELSAFKVGKQIHCVSCVSGLDMDAFVQGSMFHMYMRCGRMGDARKVFDRMSDKD- 181

Query: 384 SMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFE 443
            +  + ++ A  + G  E+ +R+  +M  S ++ + ++   IL+    SG  +E +  F+
Sbjct: 182 VVTCSALLCAYARKGCLEEVVRILSEMESSGIEANIVSWNGILSGFNRSGYHKEAVVMFQ 241

Query: 444 SMTHDLGIIPNQEHHACLIELLAQAGCSDQL-MNQLEKMPYEHDSYLWNALHGVCRIHGN 502
            + H LG  P+Q     +  +L   G S+ L M +L              +HG     G 
Sbjct: 242 KI-HHLGFCPDQ---VTVSSVLPSVGDSEMLNMGRL--------------IHGYVIKQGL 283

Query: 503 IDMGRKVVDQLIDQNPQSSATHGLLS--------------SIYSALGKGRLVEKVRQLIN 548
           +   + V+  +ID   +S   +G++S              +  + L +  LV+K  ++  
Sbjct: 284 LK-DKCVISAMIDMYGKSGHVYGIISLFNQFEMMEAGVCNAYITGLSRNGLVDKALEMFE 342

Query: 549 --ERQFKKEQAISWIEI 563
             + Q  +   +SW  I
Sbjct: 343 LFKEQTMELNVVSWTSI 359


>gi|356530245|ref|XP_003533693.1| PREDICTED: pentatricopeptide repeat-containing protein At2g35030,
           mitochondrial-like [Glycine max]
          Length = 581

 Score =  338 bits (867), Expect = 4e-90,   Method: Compositional matrix adjust.
 Identities = 184/543 (33%), Positives = 305/543 (56%), Gaps = 30/543 (5%)

Query: 90  LSNHLISMYFKCGSDVDARKVFDKIPVK-NLFSYNNMLSGYANLGMMKHARNLFDNMAER 148
           L   +I+ Y KCG   +ARK+FD+   K N+ ++  M++GY     +K A  LF  M  R
Sbjct: 34  LWTTMITGYLKCGMIREARKLFDRWDAKKNVVTWTAMVNGYIKFNQVKEAERLFYEMPLR 93

Query: 149 DVVSWNTMIIGYAKSGAVEEGLKFYKVL-RRFSISCNEFSFAGILTICVKLE-------E 200
           +VVSWNTM+ GYA++G  ++ L  ++ +  R  +S N    A  L  C ++E       +
Sbjct: 94  NVVSWNTMVDGYARNGLTQQALDLFRRMPERNVVSWNTIITA--LVQCGRIEDAQRLFDQ 151

Query: 201 LKLTRQVHGQVLVTGF-----------------LSNVVISSSIVDAYAKCGELSDARRLF 243
           +K    V    +V G                  + NVV  ++++  YA+   L +A +LF
Sbjct: 152 MKDRDVVSWTTMVAGLAKNGRVEDARALFDQMPVRNVVSWNAMITGYAQNRRLDEALQLF 211

Query: 244 DETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALE 303
                RD+ +W TM++G+ + G++  A KLF EM EKN ++WT ++ GY ++GL ++AL 
Sbjct: 212 QRMPERDMPSWNTMITGFIQNGELNRAEKLFGEMQEKNVITWTAMMTGYVQHGLSEEALR 271

Query: 304 LFTRMMIL-RIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMY 362
           +F +M+    ++PN  TF + L AC+ +  L  G+Q+H  + +T F+ +T V+S+LI+MY
Sbjct: 272 VFIKMLATNELKPNTGTFVTVLGACSDLAGLTEGQQIHQMISKTVFQDSTCVVSALINMY 331

Query: 363 SKCGCLNDGRQVFDLTDNKENSML-WNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKIT 421
           SKCG L+  R++FD     +  ++ WN MI+A   HGY ++AI LF++M    V  + +T
Sbjct: 332 SKCGELHTARKMFDDGLLSQRDLISWNGMIAAYAHHGYGKEAINLFNEMQELGVCANDVT 391

Query: 422 LAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKM 481
              +L AC+H+GLV+EG  YF+ +  +  I   ++H+ACL++L  +AG   +  N +E +
Sbjct: 392 FVGLLTACSHTGLVEEGFKYFDEILKNRSIQLREDHYACLVDLCGRAGRLKEASNIIEGL 451

Query: 482 PYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVE 541
             E    +W AL   C +HGN D+G+ V ++++   PQ++ T+ LLS++Y+++GK +   
Sbjct: 452 GEEVPLTVWGALLAGCNVHGNADIGKLVAEKILKIEPQNAGTYSLLSNMYASVGKWKEAA 511

Query: 542 KVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQMGEDAPSL 601
            VR  + +   KK+   SWIE+ N V  F V D  H   + L  +L  L  +M +     
Sbjct: 512 NVRMRMKDMGLKKQPGCSWIEVGNTVQVFVVGDKPHSQYEPLGHLLHDLHTKMKKAGDMP 571

Query: 602 DAD 604
           D D
Sbjct: 572 DDD 574



 Score =  167 bits (423), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 113/350 (32%), Positives = 179/350 (51%), Gaps = 52/350 (14%)

Query: 92  NHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNM-AERDV 150
           N  IS   + G    ARKVF+++P +++  +  M++GY   GM++ AR LFD   A+++V
Sbjct: 5   NLFISRLCREGEIDYARKVFEEMPERDIGLWTTMITGYLKCGMIREARKLFDRWDAKKNV 64

Query: 151 VSWNTMIIGYAKSGAVEEGLK-FYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHG 209
           V+W  M+ GY K   V+E  + FY++  R  +S N     G     +  + L L R++  
Sbjct: 65  VTWTAMVNGYIKFNQVKEAERLFYEMPLRNVVSWNTM-VDGYARNGLTQQALDLFRRMPE 123

Query: 210 QVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMES 269
           +        NVV  ++I+ A  +CG + DA+RLFD+   RDV++WTTMV+G AK G +E 
Sbjct: 124 R--------NVVSWNTIITALVQCGRIEDAQRLFDQMKDRDVVSWTTMVAGLAKNGRVED 175

Query: 270 ASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACAS 329
           A  LF++MP +N VSW  +I GY +N    +AL+LF R M  R  P+ +T          
Sbjct: 176 ARALFDQMPVRNVVSWNAMITGYAQNRRLDEALQLFQR-MPERDMPSWNTM--------- 225

Query: 330 IVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNT 389
                    + GF+                    + G LN   ++F     K N + W  
Sbjct: 226 ---------ITGFI--------------------QNGELNRAEKLFGEMQEK-NVITWTA 255

Query: 390 MISALTQHGYDEQAIRLFHDMVRSS-VKPDKITLAVILNACTHSGLVQEG 438
           M++   QHG  E+A+R+F  M+ ++ +KP+  T   +L AC+    + EG
Sbjct: 256 MMTGYVQHGLSEEALRVFIKMLATNELKPNTGTFVTVLGACSDLAGLTEG 305



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 97/388 (25%), Positives = 158/388 (40%), Gaps = 91/388 (23%)

Query: 234 GELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFN------------------ 275
           GE+  AR++F+E   RD+  WTTM++GY K G +  A KLF+                  
Sbjct: 15  GEIDYARKVFEEMPERDIGLWTTMITGYLKCGMIREARKLFDRWDAKKNVVTWTAMVNGY 74

Query: 276 --------------EMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFS 321
                         EMP +N VSW T++ GY RNGL Q+AL+LF R M  R   + +T  
Sbjct: 75  IKFNQVKEAERLFYEMPLRNVVSWNTMVDGYARNGLTQQALDLFRR-MPERNVVSWNTII 133

Query: 322 SCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFD----- 376
           + L  C  I   +        L       + +  ++++   +K G + D R +FD     
Sbjct: 134 TALVQCGRIEDAQR-------LFDQMKDRDVVSWTTMVAGLAKNGRVEDARALFDQMPVR 186

Query: 377 --------LTDNKENSML-----------------WNTMISALTQHGYDEQAIRLFHDMV 411
                   +T   +N  L                 WNTMI+   Q+G   +A +LF +M 
Sbjct: 187 NVVSWNAMITGYAQNRRLDEALQLFQRMPERDMPSWNTMITGFIQNGELNRAEKLFGEMQ 246

Query: 412 RSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCS 471
             +V    IT   ++      GL +E L  F  M     + PN      ++       CS
Sbjct: 247 EKNV----ITWTAMMTGYVQHGLSEEALRVFIKMLATNELKPNTGTFVTVL-----GACS 297

Query: 472 D--------QLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSAT 523
           D        Q+   + K  ++  + + +AL  +    G +   RK+ D  +       + 
Sbjct: 298 DLAGLTEGQQIHQMISKTVFQDSTCVVSALINMYSKCGELHTARKMFDDGLLSQRDLISW 357

Query: 524 HGLLSSIYSALGKGRLVEKVRQLINERQ 551
           +G++++ Y+  G G+   +   L NE Q
Sbjct: 358 NGMIAA-YAHHGYGK---EAINLFNEMQ 381



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 70/262 (26%), Positives = 131/262 (50%), Gaps = 21/262 (8%)

Query: 40  LDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYF 99
           + +LA   ++    T   +L  C++   L  G+++H  +  T  +  T  +S  LI+MY 
Sbjct: 274 IKMLATNELKPNTGTFVTVLGACSDLAGLTEGQQIHQMISKTVFQDSTCVVS-ALINMYS 332

Query: 100 KCGSDVDARKVFDK--IPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMI 157
           KCG    ARK+FD   +  ++L S+N M++ YA+ G  K A NLF+ M E  V + +   
Sbjct: 333 KCGELHTARKMFDDGLLSQRDLISWNGMIAAYAHHGYGKEAINLFNEMQELGVCANDVTF 392

Query: 158 IGY----AKSGAVEEGLKFY-KVLRRFSISCNEFSFAGILTICVKLEELK----LTRQVH 208
           +G     + +G VEEG K++ ++L+  SI   E  +A ++ +C +   LK    +   + 
Sbjct: 393 VGLLTACSHTGLVEEGFKYFDEILKNRSIQLREDHYACLVDLCGRAGRLKEASNIIEGLG 452

Query: 209 GQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDME 268
            +V +T  +   +++   V   A  G+L   + L  + + ++  T++ + + YA +G  +
Sbjct: 453 EEVPLT--VWGALLAGCNVHGNADIGKLVAEKIL--KIEPQNAGTYSLLSNMYASVGKWK 508

Query: 269 SASKLFNEMPE----KNP-VSW 285
            A+ +   M +    K P  SW
Sbjct: 509 EAANVRMRMKDMGLKKQPGCSW 530



 Score = 79.3 bits (194), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 63/260 (24%), Positives = 119/260 (45%), Gaps = 18/260 (6%)

Query: 258 VSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQ 317
           +S   + G+++ A K+F EMPE++   WTT+I GY + G+ ++A +LF R      + N 
Sbjct: 8   ISRLCREGEIDYARKVFEEMPERDIGLWTTMITGYLKCGMIREARKLFDR---WDAKKNV 64

Query: 318 HTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDL 377
            T+++ +      +     K+          R N +  ++++D Y++ G       +F  
Sbjct: 65  VTWTAMV---NGYIKFNQVKEAERLFYEMPLR-NVVSWNTMVDGYARNGLTQQALDLFRR 120

Query: 378 TDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQE 437
              + N + WNT+I+AL Q G  E A RLF  M    V    ++   ++     +G V++
Sbjct: 121 MPER-NVVSWNTIITALVQCGRIEDAQRLFDQMKDRDV----VSWTTMVAGLAKNGRVED 175

Query: 438 GLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVC 497
               F+ M      + N      +I   AQ    D+ +   ++MP E D   WN +    
Sbjct: 176 ARALFDQMP-----VRNVVSWNAMITGYAQNRRLDEALQLFQRMP-ERDMPSWNTMITGF 229

Query: 498 RIHGNIDMGRKVVDQLIDQN 517
             +G ++   K+  ++ ++N
Sbjct: 230 IQNGELNRAEKLFGEMQEKN 249


>gi|224066769|ref|XP_002302206.1| predicted protein [Populus trichocarpa]
 gi|222843932|gb|EEE81479.1| predicted protein [Populus trichocarpa]
          Length = 681

 Score =  338 bits (867), Expect = 5e-90,   Method: Compositional matrix adjust.
 Identities = 171/507 (33%), Positives = 294/507 (57%), Gaps = 2/507 (0%)

Query: 54  TLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDK 113
            LA ++  C +   ++ GK++H  + L       + L++ LI++Y KCG    A  V + 
Sbjct: 174 VLATVIGACTDLGEIQCGKQIHARI-LIDNMELDSVLTSSLINLYGKCGDLDSAHCVLNT 232

Query: 114 IPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFY 173
           +   + FS + +++GYAN G M  AR  F   +   VV WN++I GY  +    E    +
Sbjct: 233 MEEPDDFSLSALITGYANHGRMNDARRAFYRKSNSCVVVWNSLISGYVTNNEEIEAFLLF 292

Query: 174 KVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKC 233
             +++  +  +  + A IL+ C  L   +  +Q+H      G + + V++S+ +DAY+KC
Sbjct: 293 NDMQKKGLKVDFSTLATILSACSSLCNSQHGKQMHAYACKVGLICDNVVASAFIDAYSKC 352

Query: 234 GELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYT 293
           G L+DA +LF E    D +   +M++ Y+  G +E A ++FN MP K+ +SW ++I G +
Sbjct: 353 GSLNDACKLFSELKTYDTILLNSMITVYSNSGKIEDAKQIFNTMPSKSLISWNSMIVGLS 412

Query: 294 RNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTI 353
           +NG   +AL+LF  M  L +R N+   +S + ACASI SL+ G+Q+          S+ +
Sbjct: 413 QNGCPVEALDLFCMMNKLDLRMNRFNLTSVISACASISSLELGEQIFARATVVGLDSDEV 472

Query: 354 VMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRS 413
           + +SL+D Y KCG +  GR++FD T  K + + WN+M+     +G+  +A+ LF++M  +
Sbjct: 473 ISTSLVDFYCKCGFIEIGRKLFD-TMMKSDEISWNSMLMGYATNGHGLEALTLFNEMRHA 531

Query: 414 SVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQ 473
            V+P +IT   +L+AC H GLV+EG  +F  M +D  I P  EH++C+++L A+AGC ++
Sbjct: 532 GVRPTEITFTGVLSACDHCGLVKEGWRWFNIMQYDYHIDPGIEHYSCMVDLFARAGCLEE 591

Query: 474 LMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSA 533
            MN +++MP+E D+ +W+++   C  HG  D+G KV  Q+I+ +P++S  +  LSSI++ 
Sbjct: 592 AMNLIKRMPFEADASMWSSVLRGCMAHGEKDLGEKVAQQIIELDPENSGAYVQLSSIFAT 651

Query: 534 LGKGRLVEKVRQLINERQFKKEQAISW 560
            G       VR+++ ERQ +K    SW
Sbjct: 652 SGDWESSALVRKVMQERQVQKYPGYSW 678



 Score =  213 bits (541), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 138/508 (27%), Positives = 240/508 (47%), Gaps = 66/508 (12%)

Query: 50  LPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARK 109
           L  + LA  LQ      S+  GK++H+          T  L+N L+ MY +CGS  DA K
Sbjct: 3   LDLQNLARFLQSLNTPHSIHQGKQLHILFFKKGLIQSTLSLANRLLQMYTRCGSMTDAHK 62

Query: 110 VFDKIPVKNLFSYNNML-------------------------------SGYANLGMMKHA 138
           +FD++P +N FS+N M+                               SG+A  G M+ A
Sbjct: 63  LFDEMPHRNCFSWNTMIEGYMKSGNKERSIRLFDMMSNKNDYSWNVVFSGFAKAGEMEIA 122

Query: 139 RNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSIS---CNEFSFAGILTIC 195
           R LF+ M  R+ V WN+MI  YA++G+  E ++ +K L    +    C+ F  A ++  C
Sbjct: 123 RRLFNEMPNRNGVVWNSMIHSYARNGSPREAVRLFKELNLDPLDKSCCDTFVLATVIGAC 182

Query: 196 VKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWT 255
             L E++  +Q+H ++L+     + V++SS+++ Y KCG+L  A  + +  +  D  + +
Sbjct: 183 TDLGEIQCGKQIHARILIDNMELDSVLTSSLINLYGKCGDLDSAHCVLNTMEEPDDFSLS 242

Query: 256 TMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRP 315
            +++GYA  G M  A + F        V W +LI+GY  N    +A  LF  M    ++ 
Sbjct: 243 ALITGYANHGRMNDARRAFYRKSNSCVVVWNSLISGYVTNNEEIEAFLLFNDMQKKGLKV 302

Query: 316 NQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVF 375
           +  T ++ L AC+S+ + +HGKQ+H +  +     + +V S+ ID YSKCG LND  ++F
Sbjct: 303 DFSTLATILSACSSLCNSQHGKQMHAYACKVGLICDNVVASAFIDAYSKCGSLNDACKLF 362

Query: 376 DLTDNKE----NSML--------------------------WNTMISALTQHGYDEQAIR 405
                 +    NSM+                          WN+MI  L+Q+G   +A+ 
Sbjct: 363 SELKTYDTILLNSMITVYSNSGKIEDAKQIFNTMPSKSLISWNSMIVGLSQNGCPVEALD 422

Query: 406 LFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELL 465
           LF  M +  ++ ++  L  +++AC     ++ G   F   T  +G+  ++     L++  
Sbjct: 423 LFCMMNKLDLRMNRFNLTSVISACASISSLELGEQIFARATV-VGLDSDEVISTSLVDFY 481

Query: 466 AQAGCSDQLMNQLEKMPYEHDSYLWNAL 493
            + G   ++  +L     + D   WN++
Sbjct: 482 CKCGFI-EIGRKLFDTMMKSDEISWNSM 508


>gi|356569774|ref|XP_003553071.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Glycine max]
          Length = 775

 Score =  338 bits (867), Expect = 5e-90,   Method: Compositional matrix adjust.
 Identities = 193/632 (30%), Positives = 330/632 (52%), Gaps = 42/632 (6%)

Query: 1   MPSNFSPRGINRKNLPN----NCLIQSFLSLISKGQLSEAISSLDLLAQRGIRLPAETLA 56
           +P ++S R  N    PN    N ++++ L L  +    +A+    L      +  + T  
Sbjct: 52  VPFHYSLRIFNHLRNPNTFTWNTIMRAHLYL--QNSPHQALLHYKLFLASHAKPDSYTYP 109

Query: 57  FILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPV 116
            +LQ CA   S   G+++H H  ++       ++ N L+++Y  CGS   AR+VF++ PV
Sbjct: 110 ILLQCCAARVSEFEGRQLHAH-AVSSGFDGDVYVRNTLMNLYAVCGSVGSARRVFEESPV 168

Query: 117 KNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVL 176
            +L S+N +L+GY   G ++ A  +F+ M ER+ ++ N+MI  + + G VE+  + +  +
Sbjct: 169 LDLVSWNTLLAGYVQAGEVEEAERVFEGMPERNTIASNSMIALFGRKGCVEKARRIFNGV 228

Query: 177 R---------RFSISCNEFSFAG------------------------ILTICVKLEELKL 203
           R            +SC E +  G                         L+ C ++  +++
Sbjct: 229 RGRERDMVSWSAMVSCYEQNEMGEEALVLFVEMKGSGVAVDEVVVVSALSACSRVLNVEM 288

Query: 204 TRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDET-DARDVLTWTTMVSGYA 262
            R VHG  +  G    V + ++++  Y+ CGE+ DARR+FD+  +  D+++W +M+SGY 
Sbjct: 289 GRWVHGLAVKVGVEDYVSLKNALIHLYSSCGEIVDARRIFDDGGELLDLISWNSMISGYL 348

Query: 263 KLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSS 322
           + G ++ A  LF  MPEK+ VSW+ +I+GY ++    +AL LF  M +  +RP++    S
Sbjct: 349 RCGSIQDAEMLFYSMPEKDVVSWSAMISGYAQHECFSEALALFQEMQLHGVRPDETALVS 408

Query: 323 CLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKE 382
            + AC  + +L  GK +H ++ R   + N I+ ++LIDMY KCGC+ +  +VF   + K 
Sbjct: 409 AISACTHLATLDLGKWIHAYISRNKLQVNVILSTTLIDMYMKCGCVENALEVFYAMEEKG 468

Query: 383 NSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYF 442
            S  WN +I  L  +G  EQ++ +F DM ++   P++IT   +L AC H GLV +G  YF
Sbjct: 469 VST-WNAVILGLAMNGSVEQSLNMFADMKKTGTVPNEITFMGVLGACRHMGLVNDGRHYF 527

Query: 443 ESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGN 502
            SM H+  I  N +H+ C+++LL +AG   +    ++ MP   D   W AL G CR H +
Sbjct: 528 NSMIHEHKIEANIKHYGCMVDLLGRAGLLKEAEELIDSMPMAPDVATWGALLGACRKHRD 587

Query: 503 IDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIE 562
            +MG ++  +LI   P     H LLS+IY++ G    V ++R ++ +    K    S IE
Sbjct: 588 NEMGERLGRKLIQLQPDHDGFHVLLSNIYASKGNWGNVLEIRGIMAQHGVVKTPGCSMIE 647

Query: 563 IENKVHAFSVSDSLHPMRDVLYSVLEQLAGQM 594
               VH F   D  HP  + +  +L+ +A ++
Sbjct: 648 ANGTVHEFLAGDKTHPQINDIEHMLDVVAAKL 679


>gi|359490816|ref|XP_002271825.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g13600-like [Vitis vinifera]
          Length = 702

 Score =  338 bits (866), Expect = 6e-90,   Method: Compositional matrix adjust.
 Identities = 180/574 (31%), Positives = 303/574 (52%), Gaps = 28/574 (4%)

Query: 28  ISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPT 87
           +  G   EA+S  + L    I L       +L+ C   + L+LG++  LH  + +R    
Sbjct: 136 VDHGYFEEALSLFEKLQLDDIGLEFFVFPVVLKLCGGLRVLELGRQ--LHGVVIKR---- 189

Query: 88  TFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNM-- 145
                        C     A K+F    VKN+ SYN M+ GY   G ++ A+ LFD M  
Sbjct: 190 -------------CADMGSALKIFSGFSVKNVVSYNTMIVGYCENGNVEKAKELFDQMEL 236

Query: 146 AERDVVSWNTMIIGYAKSGAVEEGLKFYK-VLRRFSISCNEFSFAGILTICVKLEELKLT 204
             +D +SWN+MI GYA +   +E L  ++ +L    I  + F+   +L  C  +  L+  
Sbjct: 237 VGKDTISWNSMISGYADNLLFDEALSMFRDLLMEEGIEADSFTLGSVLAACADMASLRRG 296

Query: 205 RQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKL 264
           ++VH Q +V G   N  +  ++V+ Y+KC +L  A+  FD    RD  TW  ++SGYA  
Sbjct: 297 KEVHAQAVVRGLHWNTFVGGALVEMYSKCEDLKAAQLAFDGVTERDTATWNVLISGYACC 356

Query: 265 GDMESASKLFNEMP----EKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTF 320
             +E+   L  +M     E N  +W  +I+G+  NG  + AL LFT M    +RP+ +T 
Sbjct: 357 NQLENIQNLIQKMKGDGFEPNVYTWNGIISGHVENGHNELALRLFTEMQTSSLRPDIYTV 416

Query: 321 SSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDN 380
              L ACA + ++  GKQVH   IR  +  +  + ++L+DMY+KCG +    QV++   N
Sbjct: 417 GIILPACARLATIARGKQVHAHSIRQGYELDVHIGAALVDMYAKCGSIKHAMQVYNRISN 476

Query: 381 KENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLT 440
             N +  N M++A   HG+ ++ I LF +M+ +  +PD +T   +L++C H+G V+ G  
Sbjct: 477 P-NLVSQNAMLTAYAMHGHGDEGIALFRNMLGNGFRPDHVTFLSVLSSCVHAGAVETGHE 535

Query: 441 YFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIH 500
           +F+ MT+   + P+ +H+ C+++LL++AG  D+    ++K+P + DS +W AL G C I 
Sbjct: 536 FFDLMTY-YNVTPSLKHYTCIVDLLSRAGRLDEAYELVKKIPRKPDSVMWGALLGGCVIW 594

Query: 501 GNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISW 560
           GN+++G    + LI+  P ++  + LL+++Y+  G+   +++ RQ+I +R   K    SW
Sbjct: 595 GNVELGEIAAESLIELEPNNTGNYVLLANLYAYAGRWHDLDRTRQMIKDRGMHKSPGCSW 654

Query: 561 IEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQM 594
           IE    +H F   D  H   + +Y+ L+ L   M
Sbjct: 655 IEDREDIHVFLSCDKSHEKTEDIYTTLDNLNTHM 688



 Score = 83.2 bits (204), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 74/323 (22%), Positives = 140/323 (43%), Gaps = 53/323 (16%)

Query: 187 SFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDET 246
           ++A +L  C     L L +QVH   L TGF  +  + + ++  Y + G L D        
Sbjct: 64  TYASLLESC---RTLNLGKQVHAHTLKTGFHGHEFVETKLLQMYGRFGCLDD-------- 112

Query: 247 DARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFT 306
                                  A+ +F +MP++N  SWT +++ +  +G  ++AL LF 
Sbjct: 113 -----------------------ANLVFVKMPQRNLYSWTAILSVHVDHGYFEEALSLFE 149

Query: 307 RMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIR------------TNFR-SNTI 353
           ++ +  I      F   L  C  +  L+ G+Q+HG +I+            + F   N +
Sbjct: 150 KLQLDDIGLEFFVFPVVLKLCGGLRVLELGRQLHGVVIKRCADMGSALKIFSGFSVKNVV 209

Query: 354 VMSSLIDMYSKCGCLNDGRQVFDLTD-NKENSMLWNTMISALTQHGYDEQAIRLFHDMV- 411
             +++I  Y + G +   +++FD  +   ++++ WN+MIS    +   ++A+ +F D++ 
Sbjct: 210 SYNTMIVGYCENGNVEKAKELFDQMELVGKDTISWNSMISGYADNLLFDEALSMFRDLLM 269

Query: 412 RSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCS 471
              ++ D  TL  +L AC     ++ G     +     G+  N      L+E+ ++  C 
Sbjct: 270 EEGIEADSFTLGSVLAACADMASLRRG-KEVHAQAVVRGLHWNTFVGGALVEMYSK--CE 326

Query: 472 DQLMNQLE-KMPYEHDSYLWNAL 493
           D    QL      E D+  WN L
Sbjct: 327 DLKAAQLAFDGVTERDTATWNVL 349


>gi|297849104|ref|XP_002892433.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297338275|gb|EFH68692.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 741

 Score =  338 bits (866), Expect = 6e-90,   Method: Compositional matrix adjust.
 Identities = 196/563 (34%), Positives = 305/563 (54%), Gaps = 40/563 (7%)

Query: 34  SEAISSLDL---LAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFL 90
           S+ +S+L L   +   G+   + T  F+L+ CA+SK+ K G+++H H+ L        F+
Sbjct: 113 SDPVSALKLYVCMISLGLLPNSYTFPFLLKSCAKSKAFKEGQQIHGHV-LKLGYDLDLFV 171

Query: 91  SNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDV 150
              LIS+Y + G   DARKVFD+ P +++ SY  ++ GYA+ G ++ A+ LFD +  +DV
Sbjct: 172 HTSLISVYVQNGRLEDARKVFDRSPHRDVVSYTALIKGYASRGYIESAQKLFDEIPVKDV 231

Query: 151 VSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQ 210
           VSWN MI GYA++G  +E L+ +K + + +I  +E +   +++ C +   ++L RQVH  
Sbjct: 232 VSWNAMISGYAETGNYKEALELFKEMMKTNIRPDESTMVTVVSACAQSGSIELGRQVHSW 291

Query: 211 VLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESA 270
           +   GF SN+ I +S++D Y+KCGEL                               E+A
Sbjct: 292 IDDHGFGSNLKIVNSLMDLYSKCGEL-------------------------------ETA 320

Query: 271 SKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASI 330
             LF  +  K+ +SW TLI GYT   L ++AL LF  M+    RPN  T  S L ACA +
Sbjct: 321 CGLFEGLLYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGERPNDVTMLSILPACAHL 380

Query: 331 VSLKHGKQVHGFLIRTNFRSNTIVMS---SLIDMYSKCGCLNDGRQVFDLTDNKENSMLW 387
            ++  G+ +H + I    +S T   S   SLIDMY+KCG +    QVF+   +K  S  W
Sbjct: 381 GAIDIGRWIHVY-IDKRLKSATNASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSS-W 438

Query: 388 NTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTH 447
           N MI     HG  + A  +F  M +  ++PD IT   +L+AC+ SG++  G   F +MT 
Sbjct: 439 NAMIFGFAMHGRADAAFDIFSRMRKIGIEPDDITFVGLLSACSRSGMLDLGRHIFRTMTQ 498

Query: 448 DLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGR 507
           D  I P  EH+ C+I+LL  +G   +    +  M  E D  +W +L   C+I GN+++G 
Sbjct: 499 DYKITPKLEHYGCMIDLLGHSGLFKEAEEMINNMEMEPDGVIWCSLLKACKIRGNVELGE 558

Query: 508 KVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKV 567
                LI   P++   + LLS+IY+  G+   V K+R L+N++  KK    S IEI++ V
Sbjct: 559 SFAQNLIKIEPENPGCYVLLSNIYATAGRWNEVAKIRALLNDKGMKKVPGCSSIEIDSVV 618

Query: 568 HAFSVSDSLHPMRDVLYSVLEQL 590
           H F + D  HP    +Y +LE++
Sbjct: 619 HEFIIGDKFHPRNREIYGMLEEM 641



 Score =  223 bits (569), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 146/469 (31%), Positives = 239/469 (50%), Gaps = 21/469 (4%)

Query: 76  LHLKLTQRKTPTTFLSNHL-ISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGM 134
            H   +    P   L NH  +S+   C +    R +  ++    L + N  LS    L +
Sbjct: 17  FHFLPSSSDPPYDSLRNHPSLSLLHNCKTLQSLRLIHAQMIKTGLHNTNYALSKLLELCV 76

Query: 135 -------MKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFS 187
                  + +A ++F+ + E +++ WNTM  G+A S      LK Y  +    +  N ++
Sbjct: 77  ISPHFDGLPYAISVFETIQEPNLLIWNTMFRGHALSSDPVSALKLYVCMISLGLLPNSYT 136

Query: 188 FAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETD 247
           F  +L  C K +  K  +Q+HG VL  G+  ++ + +S++  Y + G L DAR++FD + 
Sbjct: 137 FPFLLKSCAKSKAFKEGQQIHGHVLKLGYDLDLFVHTSLISVYVQNGRLEDARKVFDRSP 196

Query: 248 ARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTR 307
            RDV+++T ++ GYA  G +ESA KLF+E+P K+ VSW  +I+GY   G  ++ALELF  
Sbjct: 197 HRDVVSYTALIKGYASRGYIESAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKE 256

Query: 308 MMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGC 367
           MM   IRP++ T  + + ACA   S++ G+QVH ++    F SN  +++SL+D+YSKCG 
Sbjct: 257 MMKTNIRPDESTMVTVVSACAQSGSIELGRQVHSWIDDHGFGSNLKIVNSLMDLYSKCGE 316

Query: 368 LNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILN 427
           L     +F+    K+  + WNT+I   T     ++A+ LF +M+RS  +P+ +T+  IL 
Sbjct: 317 LETACGLFEGLLYKD-VISWNTLIGGYTHMNLYKEALLLFQEMLRSGERPNDVTMLSILP 375

Query: 428 ACTHSGLVQEGLTYFESMTHDLGIIPNQEH-HACLIELLAQAG---CSDQLMNQLEKMPY 483
           AC H G +  G      +   L    N       LI++ A+ G    + Q+ N +     
Sbjct: 376 ACAHLGAIDIGRWIHVYIDKRLKSATNASSLRTSLIDMYAKCGDIEAAHQVFNSI----- 430

Query: 484 EHDSY-LWNALHGVCRIHGNIDMGRKVVDQL--IDQNPQSSATHGLLSS 529
            H S   WNA+     +HG  D    +  ++  I   P      GLLS+
Sbjct: 431 LHKSLSSWNAMIFGFAMHGRADAAFDIFSRMRKIGIEPDDITFVGLLSA 479



 Score = 92.8 bits (229), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 112/529 (21%), Positives = 216/529 (40%), Gaps = 119/529 (22%)

Query: 31  GQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFL 90
           G   EA+     + +  IR    T+  ++  CA+S S++LG++VH  +           +
Sbjct: 245 GNYKEALELFKEMMKTNIRPDESTMVTVVSACAQSGSIELGRQVHSWID-DHGFGSNLKI 303

Query: 91  SNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDV 150
            N L+ +Y KCG    A  +F+ +  K++ S+N ++ GY ++ + K A  LF  M     
Sbjct: 304 VNSLMDLYSKCGELETACGLFEGLLYKDVISWNTLIGGYTHMNLYKEALLLFQEM----- 358

Query: 151 VSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQ 210
                      +SG                   N+ +   IL  C  L  + + R +H  
Sbjct: 359 ----------LRSGERP----------------NDVTMLSILPACAHLGAIDIGRWIH-- 390

Query: 211 VLVTGFLSNVV----ISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGD 266
           V +   L +      + +S++D YAKCG++  A ++F+    + + +W  M+ G+A  G 
Sbjct: 391 VYIDKRLKSATNASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIFGFAMHGR 450

Query: 267 MESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCA 326
            ++A                                ++F+RM  + I P+  TF   L A
Sbjct: 451 ADAA-------------------------------FDIFSRMRKIGIEPDDITFVGLLSA 479

Query: 327 CASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSML 386
           C+    L  G+ +        FR+ T                    Q + +T   E+   
Sbjct: 480 CSRSGMLDLGRHI--------FRTMT--------------------QDYKITPKLEH--- 508

Query: 387 WNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMT 446
           +  MI  L   G  ++A  + ++M    ++PD +    +L AC   G V+ G ++ +++ 
Sbjct: 509 YGCMIDLLGHSGLFKEAEEMINNM---EMEPDGVIWCSLLKACKIRGNVELGESFAQNL- 564

Query: 447 HDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHG--NID 504
             + I P  E+  C + LL+    +    N++ K+       L N   G+ ++ G  +I+
Sbjct: 565 --IKIEP--ENPGCYV-LLSNIYATAGRWNEVAKI-----RALLND-KGMKKVPGCSSIE 613

Query: 505 MGRKVVDQLIDQ--NPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQ 551
           +   V + +I    +P++   +G+L  +   L K   V    +++ E +
Sbjct: 614 IDSVVHEFIIGDKFHPRNREIYGMLEEMEVLLEKAGFVPDTSEVLQEME 662


>gi|225446691|ref|XP_002277494.1| PREDICTED: pentatricopeptide repeat-containing protein At2g41080
           [Vitis vinifera]
          Length = 657

 Score =  338 bits (866), Expect = 7e-90,   Method: Compositional matrix adjust.
 Identities = 191/602 (31%), Positives = 309/602 (51%), Gaps = 42/602 (6%)

Query: 8   RGINRKNLPNNC-----LIQSFLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQC 62
           R + R++   N      L   F +L SKG L +A    D  +      P+   + +LQ C
Sbjct: 7   RPLTRRHFSTNPSSGSELTAEFTNLCSKGHLKQA---FDRFSSHIWSEPS-LFSHLLQSC 62

Query: 63  AESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSY 122
               SL LGK++H  L +T   +   F+SNHL+++Y KCG    A  +F  +P KN+ S 
Sbjct: 63  ISENSLSLGKQLH-SLIITSGCSSDKFISNHLLNLYSKCGQLDTAITLFGVMPRKNIMSC 121

Query: 123 NNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSIS 182
           N +++GY   G    AR +FD M ER+V +WN M+ G  +    EEGL  +  +      
Sbjct: 122 NILINGYFRSGDWVTARKMFDEMPERNVATWNAMVAGLIQFEFNEEGLGLFSRMNELGFL 181

Query: 183 CNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRL 242
            +EF+   +L  C  L  L   RQVHG V   GF  N+V+ SS+   Y KCG L +  RL
Sbjct: 182 PDEFALGSVLRGCAGLRALVAGRQVHGYVRKCGFEFNLVVVSSLAHMYMKCGSLGEGERL 241

Query: 243 FDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKAL 302
                                             MP +N V+W TLIAG  +NG  ++ L
Sbjct: 242 I-------------------------------RAMPSQNVVAWNTLIAGRAQNGYPEEVL 270

Query: 303 ELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMY 362
           + +  M +   RP++ TF S + +C+ + +L  G+Q+H  +I+        V+SSLI MY
Sbjct: 271 DQYNMMKMAGFRPDKITFVSVISSCSELATLGQGQQIHAEVIKAGASLIVSVISSLISMY 330

Query: 363 SKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITL 422
           S+CGCL    +VF   +N  + + W++MI+A   HG   +AI LF+ M +  ++ + +T 
Sbjct: 331 SRCGCLEYSLKVFLECENG-DVVCWSSMIAAYGFHGRGVEAIDLFNQMEQEKLEANDVTF 389

Query: 423 AVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMP 482
             +L AC+H GL ++G+ +F+ M    G+ P  EH+ C+++LL + G  ++    +  MP
Sbjct: 390 LSLLYACSHCGLKEKGIKFFDLMVEKYGVKPRLEHYTCMVDLLGRYGSVEEAEALIRSMP 449

Query: 483 YEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEK 542
            + D   W  L   C+IH   +M R++ +++   +P+    + LLS+I+++  +   V  
Sbjct: 450 VKADVITWKTLLSACKIHKKTEMARRISEEVFRLDPRDPVPYVLLSNIHASDKRWDDVSD 509

Query: 543 VRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQMGEDAPSLD 602
           VR+ + +R+ KKE  ISW+E++N++H F + D  HP    + S L +L  +M +     D
Sbjct: 510 VRKAMRDRKLKKEPGISWLEVKNQIHQFCMGDKSHPKSVEIASYLRELTSEMKKRGYVPD 569

Query: 603 AD 604
            D
Sbjct: 570 ID 571


>gi|359483532|ref|XP_002265722.2| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Vitis vinifera]
          Length = 824

 Score =  337 bits (865), Expect = 8e-90,   Method: Compositional matrix adjust.
 Identities = 196/637 (30%), Positives = 324/637 (50%), Gaps = 91/637 (14%)

Query: 50  LPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARK 109
           L   T   +LQ CA+ KS++ G+R+H  ++    +     L + L+ MY  CG   + R+
Sbjct: 99  LELRTYCSVLQLCADLKSIQDGRRIHSIIQSNDVEVDGV-LGSKLVFMYVTCGDLREGRR 157

Query: 110 VFDKIPVKNLFSYNNMLSGYANLGMMKH------------------ARNLFDNMAERDVV 151
           +FDK+  + +F +N +++GYA +G  +                   AR LFD + +RDV+
Sbjct: 158 IFDKVANEKVFLWNLLMNGYAKIGNFRESLSLFKRMRELGIRRVESARKLFDELGDRDVI 217

Query: 152 SWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQV 211
           SWN+MI GY  +G  E+GL  ++ +    I+ +  +   ++  C     L L R +HG  
Sbjct: 218 SWNSMISGYVSNGLSEKGLDLFEQMLLLGINTDLATMVSVVAGCSNTGMLLLGRALHGYA 277

Query: 212 LVTGFLSNVVISSSIVDAYAKCGELSD-----------------------AR-------- 240
           +   F   + +++ ++D Y+K G L+                        AR        
Sbjct: 278 IKASFGKELTLNNCLLDMYSKSGNLNSAIQVFETMGERSVVSWTSMIAGYAREGLSDMSV 337

Query: 241 RLFDETD----ARDVLTWTTMVSG-----------------------------------Y 261
           RLF E +    + D+ T TT++                                     Y
Sbjct: 338 RLFHEMEKEGISPDIFTITTILHACACTGLLENGKDVHNYIKENKMQSDLFVSNALMDMY 397

Query: 262 AKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFS 321
           AK G M  A  +F+EM  K+ VSW T+I GY++N L  +AL LF  M     +PN  T +
Sbjct: 398 AKCGSMGDAHSVFSEMQVKDIVSWNTMIGGYSKNSLPNEALNLFVEMQ-YNSKPNSITMA 456

Query: 322 SCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNK 381
             L ACAS+ +L+ G+++HG ++R  F  +  V ++L+DMY KCG L   R +FD+   K
Sbjct: 457 CILPACASLAALERGQEIHGHILRNGFSLDRHVANALVDMYLKCGALGLARLLFDMIPEK 516

Query: 382 ENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTY 441
           +  + W  MI+    HGY  +AI  F++M  S ++PD+++   IL AC+HSGL+ EG  +
Sbjct: 517 D-LVSWTVMIAGYGMHGYGSEAIAAFNEMRNSGIEPDEVSFISILYACSHSGLLDEGWGF 575

Query: 442 FESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHG 501
           F  M ++  I P  EH+AC+++LLA+AG   +    ++ MP E D+ +W AL   CRI+ 
Sbjct: 576 FNMMRNNCCIEPKSEHYACIVDLLARAGNLSKAYKFIKMMPIEPDATIWGALLCGCRIYH 635

Query: 502 NIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWI 561
           ++ +  KV + + +  P+++  + LL++IY+   K   V+K+R+ I  R  +K    SWI
Sbjct: 636 DVKLAEKVAEHVFELEPENTGYYVLLANIYAEAEKWEEVKKLRERIGRRGLRKNPGCSWI 695

Query: 562 EIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQMGEDA 598
           EI+ KVH F   DS HP+ + +  +L++   +M E+ 
Sbjct: 696 EIKGKVHIFVTGDSSHPLANKIELLLKKTRTRMKEEG 732


>gi|359477376|ref|XP_002280144.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Vitis vinifera]
          Length = 642

 Score =  337 bits (865), Expect = 9e-90,   Method: Compositional matrix adjust.
 Identities = 195/596 (32%), Positives = 313/596 (52%), Gaps = 17/596 (2%)

Query: 3   SNFSPRGINRKNLPNNCLIQSFL-SLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQ 61
           ++++ +  +    PN  L  S +   +   Q  EA S    + +  I +   T++ +L+ 
Sbjct: 51  TDYAHKVFDEITQPNAYLWTSLIHGYVENRQYDEAFSLFIQMRREPISVLNFTISSVLKA 110

Query: 62  CAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFS 121
            A     K G+ V+    L         + N ++ ++ +C     AR+ FD++  K++ S
Sbjct: 111 LARLTRFKGGQAVY-GFVLKYGFAFDLIVQNSVLDLFMRCRKVDTARQAFDEMCEKDIVS 169

Query: 122 YNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSI 181
           +N M+SGY N   +  AR  FD M ER+VVSW +MI GY K+G + E    +  +    +
Sbjct: 170 WNMMISGYGNNDRVDIARKFFDRMPERNVVSWTSMICGYVKAGDMAEAQVLFDSMPVKDL 229

Query: 182 SCNEFSFAGILTI--CVKLEELKLTRQVHGQVLVTGFLS-NVVISSSIVDAYAKCGELSD 238
           +      +G + I  CV        R + G++ +    S N++IS      + K GEL  
Sbjct: 230 ASWNVMVSGYMDIGDCVN------ARIIFGKMPIHDTGSWNIMIS-----GFCKAGELES 278

Query: 239 ARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLG 298
           A+  FD    ++V++W  M+ GY K GD   A  LF++MP KN V+W+T+I GY RNG  
Sbjct: 279 AKDFFDRMPNKNVISWGIMLDGYIKNGDTNGARCLFDQMPMKNLVTWSTMIGGYARNGQP 338

Query: 299 QKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSL 358
            KALELF R     I+P++      + AC+ +  +   + +    +  +  S+  V +SL
Sbjct: 339 LKALELFERFKEQDIKPDETFILGIISACSQLGIIDAAESIIHNYVGPSLLSDLRVFTSL 398

Query: 359 IDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPD 418
           IDMY+KCG +    Q+F++   K+  + ++TMI+AL  HG    AI LF  M R+++KPD
Sbjct: 399 IDMYAKCGSIEKALQMFEMAHPKD-LLCYSTMIAALANHGLGRDAIFLFDKMQRANIKPD 457

Query: 419 KITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQL 478
            +T   +L AC H GLV EG  YF+ MT + GI P+++H+AC+++LL + GC ++  N +
Sbjct: 458 SVTFLGVLTACNHGGLVDEGRKYFKQMTEEFGIQPSEKHYACVVDLLGRVGCLEEAYNLI 517

Query: 479 EKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGR 538
             MP    S +W AL   CR+H N+ +      +L    P +S  + LLS+IY+A G+  
Sbjct: 518 RNMPIAPHSVVWGALLAACRVHCNVQLAEVAAAELFKIEPDNSGNYILLSNIYAAAGRWG 577

Query: 539 LVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQM 594
            V KVR  I E + +K +  SWIE+ + VH F + D  H   D +  +L  L   M
Sbjct: 578 SVAKVRAKIREHRVRKNRGSSWIELSHVVHEFVMGDMSHTDSDSISLILYLLCEDM 633



 Score =  159 bits (401), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 134/532 (25%), Positives = 235/532 (44%), Gaps = 80/532 (15%)

Query: 58  ILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVK 117
           I+  C   K+LK  K +H  L +      + F+ N L+ +Y + G+   A KVFD+I   
Sbjct: 8   IIHNC---KTLKSLKSIHARLLIESSVASSEFVINKLLRLYSRFGATDYAHKVFDEITQP 64

Query: 118 NLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLR 177
           N + +                                ++I GY ++   +E    +  +R
Sbjct: 65  NAYLW-------------------------------TSLIHGYVENRQYDEAFSLFIQMR 93

Query: 178 RFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELS 237
           R  IS   F+ + +L    +L   K  + V+G VL  GF  ++++ +S++D + +C ++ 
Sbjct: 94  REPISVLNFTISSVLKALARLTRFKGGQAVYGFVLKYGFAFDLIVQNSVLDLFMRCRKVD 153

Query: 238 DARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGL 297
            AR+ FDE   +D+++W  M+SGY     ++ A K F+ MPE+N VSWT++I GY + G 
Sbjct: 154 TARQAFDEMCEKDIVSWNMMISGYGNNDRVDIARKFFDRMPERNVVSWTSMICGYVKAGD 213

Query: 298 GQKALELFTRMMILRIRPNQHTFSSCL----CACASIVSLK--------HGKQVHGFLIR 345
             +A  LF  M +  +       S  +    C  A I+  K            + GF   
Sbjct: 214 MAEAQVLFDSMPVKDLASWNVMVSGYMDIGDCVNARIIFGKMPIHDTGSWNIMISGFCKA 273

Query: 346 TNFRS-----------NTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISAL 394
               S           N I    ++D Y K G  N  R +FD    K N + W+TMI   
Sbjct: 274 GELESAKDFFDRMPNKNVISWGIMLDGYIKNGDTNGARCLFDQMPMK-NLVTWSTMIGGY 332

Query: 395 TQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDL---GI 451
            ++G   +A+ LF       +KPD+  +  I++AC+  G++       ES+ H+     +
Sbjct: 333 ARNGQPLKALELFERFKEQDIKPDETFILGIISACSQLGIIDAA----ESIIHNYVGPSL 388

Query: 452 IPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVV- 510
           + +      LI++ A+ G  ++ + Q+ +M +  D   ++ +      HG   +GR  + 
Sbjct: 389 LSDLRVFTSLIDMYAKCGSIEKAL-QMFEMAHPKDLLCYSTMIAALANHG---LGRDAIF 444

Query: 511 --DQLIDQN--PQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAI 558
             D++   N  P S    G+L    +A   G LV++ R+    +Q  +E  I
Sbjct: 445 LFDKMQRANIKPDSVTFLGVL----TACNHGGLVDEGRKYF--KQMTEEFGI 490


>gi|449445033|ref|XP_004140278.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g20230-like [Cucumis sativus]
          Length = 679

 Score =  337 bits (865), Expect = 9e-90,   Method: Compositional matrix adjust.
 Identities = 181/547 (33%), Positives = 296/547 (54%), Gaps = 35/547 (6%)

Query: 51  PAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKV 110
           P  + A + Q       LKLG +VH H+ L +   PT  + + +++ Y   G D+D+   
Sbjct: 69  PILSYAPVFQFLTGLNMLKLGHQVHAHM-LLRGLQPTALVGSKMVAFYASSG-DIDS--- 123

Query: 111 FDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGL 170
                                      + ++F+ + E   + +N+MI  YA+ G  E  +
Sbjct: 124 ---------------------------SVSVFNGIGEPSSLLFNSMIRAYARYGFAERTV 156

Query: 171 KFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAY 230
             Y  +  +  + + F+F  +L   V+L  + + + VHG +L  G   ++ +++S++  Y
Sbjct: 157 ATYFSMHSWGFTGDYFTFPFVLKSSVELLSVWMGKCVHGLILRIGLQFDLYVATSLIILY 216

Query: 231 AKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIA 290
            KCGE++DA ++FD    RDV +W  +++GY K G +++A  +F  MP +N VSWTT+I+
Sbjct: 217 GKCGEINDAGKVFDNMTIRDVSSWNALLAGYTKSGCIDAALAIFERMPWRNIVSWTTMIS 276

Query: 291 GYTRNGLGQKALELFTRMMI--LRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNF 348
           GY+++GL Q+AL LF  M+     +RPN  T  S L ACA + +L+ G+Q+H    R   
Sbjct: 277 GYSQSGLAQQALSLFDEMVKEDSGVRPNWVTIMSVLPACAQLSTLERGRQIHELACRMGL 336

Query: 349 RSNTIVMSSLIDMYSKCGCLNDGRQVFD-LTDNKENSMLWNTMISALTQHGYDEQAIRLF 407
            SN  V+ +L  MY+KCG L D R  FD L  N++N + WNTMI+A   +G+  QA+  F
Sbjct: 337 NSNASVLIALTAMYAKCGSLVDARNCFDKLNRNEKNLIAWNTMITAYASYGHGLQAVSTF 396

Query: 408 HDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQ 467
            +M+++ ++PD IT   +L+ C+HSGLV  GL YF  M+    I P  EH+AC+ +LL +
Sbjct: 397 REMIQAGIQPDDITFTGLLSGCSHSGLVDVGLKYFNHMSTTYSINPRVEHYACVADLLGR 456

Query: 468 AGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLL 527
           AG   +    + +MP      +W +L   CR H N++M      +L    P+++  + LL
Sbjct: 457 AGRLAEASKLVGEMPMPAGPSIWGSLLAACRKHRNLEMAETAARKLFVLEPENTGNYVLL 516

Query: 528 SSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVL 587
           S++Y+  G+ + V+K+R ++  +  KK    SWIEI  K H F   D+ HP    +Y  L
Sbjct: 517 SNMYAEAGRWQEVDKLRAIVKSQGTKKSPGCSWIEINGKAHMFLGGDTSHPQGKEIYMFL 576

Query: 588 EQLAGQM 594
           E L  +M
Sbjct: 577 EALPEKM 583



 Score = 72.0 bits (175), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 51/166 (30%), Positives = 90/166 (54%), Gaps = 15/166 (9%)

Query: 21  IQSFLSLIS----KGQLSEAISSLDLLAQR--GIRLPAETLAFILQQCAESKSLKLGKRV 74
           I S+ ++IS     G   +A+S  D + +   G+R    T+  +L  CA+  +L+ G+++
Sbjct: 268 IVSWTTMISGYSQSGLAQQALSLFDEMVKEDSGVRPNWVTIMSVLPACAQLSTLERGRQI 327

Query: 75  H-LHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKI--PVKNLFSYNNMLSGYAN 131
           H L  ++      +  ++  L +MY KCGS VDAR  FDK+    KNL ++N M++ YA+
Sbjct: 328 HELACRMGLNSNASVLIA--LTAMYAKCGSLVDARNCFDKLNRNEKNLIAWNTMITAYAS 385

Query: 132 LGMMKHARNLFDNMAER----DVVSWNTMIIGYAKSGAVEEGLKFY 173
            G    A + F  M +     D +++  ++ G + SG V+ GLK++
Sbjct: 386 YGHGLQAVSTFREMIQAGIQPDDITFTGLLSGCSHSGLVDVGLKYF 431


>gi|356561853|ref|XP_003549191.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g20230-like [Glycine max]
          Length = 748

 Score =  337 bits (864), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 174/545 (31%), Positives = 317/545 (58%), Gaps = 12/545 (2%)

Query: 59  LQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKN 118
           ++ CA  ++L  G+++H     +   T  + +++ L  MY KC   +DARK+FD++P ++
Sbjct: 111 IKSCASLRALDPGQQLHAFAAASGFLT-DSIVASSLTHMYLKCDRILDARKLFDRMPDRD 169

Query: 119 LFSYNNMLSGYANLGMMKHARNLFDNM----AERDVVSWNTMIIGYAKSGAVEEGLKFYK 174
           +  ++ M++GY+ LG+++ A+ LF  M     E ++VSWN M+ G+  +G  +E +  ++
Sbjct: 170 VVVWSAMIAGYSRLGLVEEAKELFGEMRSGGVEPNLVSWNGMLAGFGNNGFYDEAVGMFR 229

Query: 175 VLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCG 234
           ++       +  + + +L     LE++ +  QVHG V+  G  S+  + S+++D Y KCG
Sbjct: 230 MMLVQGFWPDGSTVSCVLPAVGCLEDVVVGAQVHGYVIKQGLGSDKFVVSAMLDMYGKCG 289

Query: 235 ELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEK----NPVSWTTLIA 290
            + +  R+FDE +  ++ +    ++G ++ G +++A ++FN+  ++    N V+WT++IA
Sbjct: 290 CVKEMSRVFDEVEEMEIGSLNAFLTGLSRNGMVDTALEVFNKFKDQKMELNVVTWTSIIA 349

Query: 291 GYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRS 350
             ++NG   +ALELF  M    + PN  T  S + AC +I +L HGK++H F +R     
Sbjct: 350 SCSQNGKDLEALELFRDMQAYGVEPNAVTIPSLIPACGNISALMHGKEIHCFSLRRGIFD 409

Query: 351 NTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDM 410
           +  V S+LIDMY+KCG +   R+ FD   +  N + WN ++     HG  ++ + +FH M
Sbjct: 410 DVYVGSALIDMYAKCGRIQLARRCFDKM-SALNLVSWNAVMKGYAMHGKAKETMEMFHMM 468

Query: 411 VRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGC 470
           ++S  KPD +T   +L+AC  +GL +EG   + SM+ + GI P  EH+ACL+ LL++ G 
Sbjct: 469 LQSGQKPDLVTFTCVLSACAQNGLTEEGWRCYNSMSEEHGIEPKMEHYACLVTLLSRVGK 528

Query: 471 SDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSI 530
            ++  + +++MP+E D+ +W AL   CR+H N+ +G    ++L    P +   + LLS+I
Sbjct: 529 LEEAYSIIKEMPFEPDACVWGALLSSCRVHNNLSLGEIAAEKLFFLEPTNPGNYILLSNI 588

Query: 531 YSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHP-MRDVLYSVLEQ 589
           Y++ G      ++R+++  +  +K    SWIE+ +KVH     D  HP M+D+L   L++
Sbjct: 589 YASKGLWDEENRIREVMKSKGLRKNPGYSWIEVGHKVHMLLAGDQSHPQMKDILEK-LDK 647

Query: 590 LAGQM 594
           L  QM
Sbjct: 648 LNMQM 652



 Score =  184 bits (468), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 122/424 (28%), Positives = 211/424 (49%), Gaps = 22/424 (5%)

Query: 107 ARKVFDKIPVKNLFS----YNNMLSGYAN---LGMMKHARNLFDNMAERDVVSWNTMIIG 159
           AR+    I   NLFS      ++LS YAN   L   + +  L  ++    + S++++I  
Sbjct: 19  ARQAHALILRLNLFSDTQLTTSLLSFYANALSLSTPQLSLTLSSHLPHPTLFSFSSLIHA 78

Query: 160 YAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSN 219
           +A+S      L  +  L    +  + F     +  C  L  L   +Q+H     +GFL++
Sbjct: 79  FARSHHFPHVLTTFSHLHPLRLIPDAFLLPSAIKSCASLRALDPGQQLHAFAAASGFLTD 138

Query: 220 VVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEM-- 277
            +++SS+   Y KC  + DAR+LFD    RDV+ W+ M++GY++LG +E A +LF EM  
Sbjct: 139 SIVASSLTHMYLKCDRILDARKLFDRMPDRDVVVWSAMIAGYSRLGLVEEAKELFGEMRS 198

Query: 278 --PEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKH 335
              E N VSW  ++AG+  NG   +A+ +F  M++    P+  T S  L A   +  +  
Sbjct: 199 GGVEPNLVSWNGMLAGFGNNGFYDEAVGMFRMMLVQGFWPDGSTVSCVLPAVGCLEDVVV 258

Query: 336 GKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALT 395
           G QVHG++I+    S+  V+S+++DMY KCGC+ +  +VFD  +  E   L N  ++ L+
Sbjct: 259 GAQVHGYVIKQGLGSDKFVVSAMLDMYGKCGCVKEMSRVFDEVEEMEIGSL-NAFLTGLS 317

Query: 396 QHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQ 455
           ++G  + A+ +F+      ++ + +T   I+ +C+ +G   E L  F  M    G+ PN 
Sbjct: 318 RNGMVDTALEVFNKFKDQKMELNVVTWTSIIASCSQNGKDLEALELFRDM-QAYGVEPNA 376

Query: 456 EHHACLIELLAQAGCSDQLMNQLEKMPYE------HDSYLWNALHGVCRIHGNIDMGRKV 509
                +  L+   G    LM+  E   +        D Y+ +AL  +    G I + R+ 
Sbjct: 377 ---VTIPSLIPACGNISALMHGKEIHCFSLRRGIFDDVYVGSALIDMYAKCGRIQLARRC 433

Query: 510 VDQL 513
            D++
Sbjct: 434 FDKM 437



 Score = 66.6 bits (161), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 43/147 (29%), Positives = 71/147 (48%), Gaps = 5/147 (3%)

Query: 31  GQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFL 90
           G+  EA+     +   G+   A T+  ++  C    +L  GK +H    L +      ++
Sbjct: 355 GKDLEALELFRDMQAYGVEPNAVTIPSLIPACGNISALMHGKEIHC-FSLRRGIFDDVYV 413

Query: 91  SNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAER-- 148
            + LI MY KCG    AR+ FDK+   NL S+N ++ GYA  G  K    +F  M +   
Sbjct: 414 GSALIDMYAKCGRIQLARRCFDKMSALNLVSWNAVMKGYAMHGKAKETMEMFHMMLQSGQ 473

Query: 149 --DVVSWNTMIIGYAKSGAVEEGLKFY 173
             D+V++  ++   A++G  EEG + Y
Sbjct: 474 KPDLVTFTCVLSACAQNGLTEEGWRCY 500


>gi|148909481|gb|ABR17838.1| unknown [Picea sitchensis]
          Length = 795

 Score =  337 bits (864), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 185/564 (32%), Positives = 294/564 (52%), Gaps = 64/564 (11%)

Query: 31  GQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFL 90
           GQ  EA++    +   GI+  + TL  ++  CA   +L+ GK++H +  +         +
Sbjct: 200 GQPYEALALFSEMQVNGIKPNSSTLVSVMPVCAHLLALEQGKQIHCY-AIRSGIESDVLV 258

Query: 91  SNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDV 150
            N L++MY KCG+                               +  A  LF+ M  RDV
Sbjct: 259 VNGLVNMYAKCGN-------------------------------VNTAHKLFERMPIRDV 287

Query: 151 VSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQ 210
            SWN +I GY+ +    E L F+  ++   I  N  +   +L  C  L  L+  +Q+HG 
Sbjct: 288 ASWNAIIGGYSLNSQHHEALAFFNRMQVRGIKPNSITMVSVLPACAHLFALEQGQQIHGY 347

Query: 211 VLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESA 270
            + +GF SN V+ +++V+ YAKC                               G++ SA
Sbjct: 348 AIRSGFESNDVVGNALVNMYAKC-------------------------------GNVNSA 376

Query: 271 SKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASI 330
            KLF  MP+KN V+W  +I+GY+++G   +AL LF  M    I+P+     S L ACA  
Sbjct: 377 YKLFERMPKKNVVAWNAIISGYSQHGHPHEALALFIEMQAQGIKPDSFAIVSVLPACAHF 436

Query: 331 VSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTM 390
           ++L+ GKQ+HG+ IR+ F SN +V + L+D+Y+KCG +N  +++F+    +++ + W TM
Sbjct: 437 LALEQGKQIHGYTIRSGFESNVVVGTGLVDIYAKCGNVNTAQKLFERMP-EQDVVSWTTM 495

Query: 391 ISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLG 450
           I A   HG+ E A+ LF  M  +  K D I    IL AC+H+GLV +GL YF+ M  D G
Sbjct: 496 ILAYGIHGHGEDALALFSKMQETGTKLDHIAFTAILTACSHAGLVDQGLQYFQCMKSDYG 555

Query: 451 IIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVV 510
           + P  EH+ACL++LL +AG  D+    ++ M  E D+ +W AL G CRIH NI++G +  
Sbjct: 556 LAPKLEHYACLVDLLGRAGHLDEANGIIKNMSLEPDANVWGALLGACRIHCNIELGEQAA 615

Query: 511 DQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAF 570
             L + +P ++  + LLS+IY+   +   V K+R+++ E+  KK+   S + +   V  F
Sbjct: 616 KHLFELDPDNAGYYVLLSNIYAEAQRWEDVAKLRKMMKEKGVKKQPGCSVVAVHRDVQTF 675

Query: 571 SVSDSLHPMRDVLYSVLEQLAGQM 594
            V D  HP  + +Y++LE L  QM
Sbjct: 676 LVGDRTHPQSEQIYAMLEILYEQM 699



 Score =  176 bits (445), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 97/345 (28%), Positives = 173/345 (50%), Gaps = 34/345 (9%)

Query: 149 DVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVH 208
           + V W   IIGY K+G   + L+ Y  ++R  I+ ++  F  ++  C    +L+  R+VH
Sbjct: 84  NAVVWKETIIGYVKNGFWNKALRLYYQMQRTGINPDKLVFLSVIKACGSQSDLQAGRKVH 143

Query: 209 GQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDME 268
             ++  GF S                               DV+  T + S Y K G +E
Sbjct: 144 EDIIARGFES-------------------------------DVIVGTALASMYTKCGSLE 172

Query: 269 SASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACA 328
           +A ++F+ MP+++ VSW  +IAGY++NG   +AL LF+ M +  I+PN  T  S +  CA
Sbjct: 173 NARQVFDRMPKRDVVSWNAIIAGYSQNGQPYEALALFSEMQVNGIKPNSSTLVSVMPVCA 232

Query: 329 SIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWN 388
            +++L+ GKQ+H + IR+   S+ +V++ L++MY+KCG +N   ++F+    ++ +  WN
Sbjct: 233 HLLALEQGKQIHCYAIRSGIESDVLVVNGLVNMYAKCGNVNTAHKLFERMPIRDVAS-WN 291

Query: 389 TMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHD 448
            +I   + +    +A+  F+ M    +KP+ IT+  +L AC H   +++G          
Sbjct: 292 AIIGGYSLNSQHHEALAFFNRMQVRGIKPNSITMVSVLPACAHLFALEQG-QQIHGYAIR 350

Query: 449 LGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNAL 493
            G   N      L+ + A+ G  +      E+MP + +   WNA+
Sbjct: 351 SGFESNDVVGNALVNMYAKCGNVNSAYKLFERMP-KKNVVAWNAI 394



 Score =  119 bits (297), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 72/219 (32%), Positives = 110/219 (50%), Gaps = 11/219 (5%)

Query: 281 NPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVH 340
           N V W   I GY +NG   KAL L+ +M    I P++  F S + AC S   L+ G++VH
Sbjct: 84  NAVVWKETIIGYVKNGFWNKALRLYYQMQRTGINPDKLVFLSVIKACGSQSDLQAGRKVH 143

Query: 341 GFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYD 400
             +I   F S+ IV ++L  MY+KCG L + RQVFD    K + + WN +I+  +Q+G  
Sbjct: 144 EDIIARGFESDVIVGTALASMYTKCGSLENARQVFDRMP-KRDVVSWNAIIAGYSQNGQP 202

Query: 401 EQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHAC 460
            +A+ LF +M  + +KP+  TL  ++  C H   +++G        H   I    E    
Sbjct: 203 YEALALFSEMQVNGIKPNSSTLVSVMPVCAHLLALEQG-----KQIHCYAIRSGIESDVL 257

Query: 461 ----LIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHG 495
               L+ + A+ G  +      E+MP   D   WNA+ G
Sbjct: 258 VVNGLVNMYAKCGNVNTAHKLFERMPIR-DVASWNAIIG 295



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 29/119 (24%), Positives = 55/119 (46%), Gaps = 2/119 (1%)

Query: 375 FDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGL 434
           F  TD + N+++W   I    ++G+  +A+RL++ M R+ + PDK+    ++ AC     
Sbjct: 76  FTQTDIRNNAVVWKETIIGYVKNGFWNKALRLYYQMQRTGINPDKLVFLSVIKACGSQSD 135

Query: 435 VQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNAL 493
           +Q G    E +    G   +      L  +  + G  +      ++MP + D   WNA+
Sbjct: 136 LQAGRKVHEDII-ARGFESDVIVGTALASMYTKCGSLENARQVFDRMP-KRDVVSWNAI 192


>gi|413933352|gb|AFW67903.1| pentatricopeptide repeat protein PPR868-14 [Zea mays]
          Length = 788

 Score =  337 bits (863), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 171/503 (33%), Positives = 289/503 (57%), Gaps = 10/503 (1%)

Query: 92  NHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVV 151
           N LI++Y + G    AR+VFD + V+++ S+  +L  YA+LG +  AR + D M  R+ V
Sbjct: 286 NSLITLYLRMGDAAAARRVFDDMEVRDVVSWTALLDVYADLGDLDGARRVLDAMPARNEV 345

Query: 152 SWNTMIIGYAKSGAVEEGLKFYKVLR----RFSISCNEFSFAGILTICVKLEELKLTRQV 207
           SW T+I  + + G   E LK Y  +     R +ISC    F+ +L+ C  L++L+   ++
Sbjct: 346 SWGTLIARHEQKGDTAEALKLYSQMLADGCRPNISC----FSSVLSACATLQDLRGGTRI 401

Query: 208 HGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDM 267
           H   L  G  +N+ +SSS++D Y KC + + A+R+F+    ++ + W +++SGY+  G M
Sbjct: 402 HANALKMGSSTNLFVSSSLIDMYCKCKQCTYAQRVFNSLPEKNTVCWNSLISGYSWNGKM 461

Query: 268 ESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCAC 327
             A  LFN+MP +N VSW T+I+GY  N     AL  F  M+     P + T SS L AC
Sbjct: 462 VEAEGLFNKMPARNSVSWNTMISGYAENRRFGDALNYFYAMLASGHIPGEITLSSVLLAC 521

Query: 328 ASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLW 387
           A++ SL+ G+ VH  +++     N  + ++L DMY+K G L+  R+VF     K N++ W
Sbjct: 522 ANLCSLEMGRMVHAEIVKLGIEDNIFMGTALCDMYAKSGDLDSSRRVFYQMPEK-NNITW 580

Query: 388 NTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTH 447
             M+  L ++G+ E++I LF DM+ + + P++ T   IL AC+H GLV++ + YFE+M  
Sbjct: 581 TAMVQGLAENGFAEESISLFEDMIENGIAPNEHTFLAILFACSHCGLVEQAIHYFETMQA 640

Query: 448 DLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGR 507
             GI P  +H+ C++++LA+AGC  +    L K+  E D+  W++L   C  + N ++G 
Sbjct: 641 H-GIPPKSKHYTCMVDVLARAGCLPEAEELLMKVSSELDTSSWSSLLSACSTYRNKEIGE 699

Query: 508 KVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKV 567
           +   +L +    ++A + LLS++Y++ GK +   + R L+     KK+   SW+++  + 
Sbjct: 700 RAAKKLHELEKDNTAGYVLLSNMYASCGKWKDAAETRILMQGASLKKDAGCSWLQLRGQY 759

Query: 568 HAFSVSDSLHPMRDVLYSVLEQL 590
           HAF      HP+   +Y +L+ L
Sbjct: 760 HAFFSWKEKHPLSLEIYEILDLL 782



 Score =  192 bits (488), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 123/438 (28%), Positives = 214/438 (48%), Gaps = 33/438 (7%)

Query: 87  TTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMA 146
           ++F  + ++S + K G    AR++F  +P K++ SY  M+      G ++ A  L++   
Sbjct: 148 SSFTYDFMVSEHVKAGDIASARRLFYGMPEKSVVSYTTMVDALMKRGSVRDAVELYERCP 207

Query: 147 ERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQ 206
              V  +  MI G+ ++   ++    ++ +   S+  N  +   ++  CV   E  L   
Sbjct: 208 LHSVAFFTAMISGFVRNELHKDAFTVFRKMLTCSVRPNVVTLICVIKACVGAGEFDLAMG 267

Query: 207 VHG-QVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLG 265
           V G  V    F  ++ + +S++  Y + G+ + ARR+FD+ + RDV++WT ++  YA LG
Sbjct: 268 VVGLAVKCNLFEKSIEVHNSLITLYLRMGDAAAARRVFDDMEVRDVVSWTALLDVYADLG 327

Query: 266 DMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLC 325
           D++ A ++ + MP +N VSW TLIA + + G   +AL+L+++M+    RPN   FSS L 
Sbjct: 328 DLDGARRVLDAMPARNEVSWGTLIARHEQKGDTAEALKLYSQMLADGCRPNISCFSSVLS 387

Query: 326 ACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNK---- 381
           ACA++  L+ G ++H   ++    +N  V SSLIDMY KC      ++VF+    K    
Sbjct: 388 ACATLQDLRGGTRIHANALKMGSSTNLFVSSSLIDMYCKCKQCTYAQRVFNSLPEKNTVC 447

Query: 382 --------------------------ENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSV 415
                                      NS+ WNTMIS   ++     A+  F+ M+ S  
Sbjct: 448 WNSLISGYSWNGKMVEAEGLFNKMPARNSVSWNTMISGYAENRRFGDALNYFYAMLASGH 507

Query: 416 KPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLM 475
            P +ITL+ +L AC +   ++ G      +   LGI  N      L ++ A++G  D   
Sbjct: 508 IPGEITLSSVLLACANLCSLEMGRMVHAEIVK-LGIEDNIFMGTALCDMYAKSGDLDSSR 566

Query: 476 NQLEKMPYEHDSYLWNAL 493
               +MP E ++  W A+
Sbjct: 567 RVFYQMP-EKNNITWTAM 583



 Score =  169 bits (427), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 107/391 (27%), Positives = 190/391 (48%), Gaps = 49/391 (12%)

Query: 30  KGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTF 89
           KG  +EA+     +   G R      + +L  CA  + L+ G R+H +  L    +   F
Sbjct: 357 KGDTAEALKLYSQMLADGCRPNISCFSSVLSACATLQDLRGGTRIHAN-ALKMGSSTNLF 415

Query: 90  LSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERD 149
           +S+ LI MY KC     A++VF+ +P KN   +N+++SGY+  G M  A  LF+ M  R+
Sbjct: 416 VSSSLIDMYCKCKQCTYAQRVFNSLPEKNTVCWNSLISGYSWNGKMVEAEGLFNKMPARN 475

Query: 150 VVSWNTMIIGYAKSGAVEEGLK-FYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVH 208
            VSWNTMI GYA++    + L  FY +L    I   E + + +L  C  L  L++ R VH
Sbjct: 476 SVSWNTMISGYAENRRFGDALNYFYAMLASGHIP-GEITLSSVLLACANLCSLEMGRMVH 534

Query: 209 GQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDME 268
            +++  G   N+ + +++ D YAK G+L  +RR+F +   ++ +TWT MV G A+     
Sbjct: 535 AEIVKLGIEDNIFMGTALCDMYAKSGDLDSSRRVFYQMPEKNNITWTAMVQGLAE----- 589

Query: 269 SASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACA 328
                                     NG  ++++ LF  M+   I PN+HTF + L AC+
Sbjct: 590 --------------------------NGFAEESISLFEDMIENGIAPNEHTFLAILFACS 623

Query: 329 SIVSLKHG------KQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKE 382
               ++         Q HG   ++         + ++D+ ++ GCL +  ++     ++ 
Sbjct: 624 HCGLVEQAIHYFETMQAHGIPPKSKH------YTCMVDVLARAGCLPEAEELLMKVSSEL 677

Query: 383 NSMLWNTMISALTQH---GYDEQAIRLFHDM 410
           ++  W++++SA + +      E+A +  H++
Sbjct: 678 DTSSWSSLLSACSTYRNKEIGERAAKKLHEL 708



 Score = 95.9 bits (237), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 84/358 (23%), Positives = 145/358 (40%), Gaps = 67/358 (18%)

Query: 201 LKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDE---TDARDVLTWTTM 257
           L L   +H   L +G  ++  ++S+++ AYA      D  + F +    DA    T+  M
Sbjct: 96  LPLVLSLHAHALRSGLATDRSVASNLLTAYAAFARAGDRDQAFRDCVAADAASSFTYDFM 155

Query: 258 VSGYAKLGDMESASKLFNEMPEKNPVSWTT------------------------------ 287
           VS + K GD+ SA +LF  MPEK+ VS+TT                              
Sbjct: 156 VSEHVKAGDIASARRLFYGMPEKSVVSYTTMVDALMKRGSVRDAVELYERCPLHSVAFFT 215

Query: 288 -LIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRT 346
            +I+G+ RN L + A  +F +M+   +RPN  T    + AC           V G  ++ 
Sbjct: 216 AMISGFVRNELHKDAFTVFRKMLTCSVRPNVVTLICVIKACVGAGEFDLAMGVVGLAVKC 275

Query: 347 NFRSNTI-VMSSLIDMYSKCGCLNDGRQVFDLTDNKE----------------------- 382
           N    +I V +SLI +Y + G     R+VFD  + ++                       
Sbjct: 276 NLFEKSIEVHNSLITLYLRMGDAAAARRVFDDMEVRDVVSWTALLDVYADLGDLDGARRV 335

Query: 383 -------NSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLV 435
                  N + W T+I+   Q G   +A++L+  M+    +P+    + +L+AC     +
Sbjct: 336 LDAMPARNEVSWGTLIARHEQKGDTAEALKLYSQMLADGCRPNISCFSSVLSACATLQDL 395

Query: 436 QEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNAL 493
           + G T   +    +G   N    + LI++  +             +P E ++  WN+L
Sbjct: 396 RGG-TRIHANALKMGSSTNLFVSSSLIDMYCKCKQCTYAQRVFNSLP-EKNTVCWNSL 451


>gi|449482847|ref|XP_004156421.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Cucumis sativus]
          Length = 833

 Score =  336 bits (862), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 184/547 (33%), Positives = 305/547 (55%), Gaps = 50/547 (9%)

Query: 56  AFILQQCAESKSLKLGKRVHLHL----KLTQRKTPTTFLSNHLISMYFKCGSDVDARKVF 111
           +F+L  C    +L LG  +H  +    +L+        + N LISMY +CG   DA KVF
Sbjct: 49  SFLLSICGREGNLHLGSSLHASIIKSFELSNHYNGVVIM-NSLISMYDRCGKLPDAVKVF 107

Query: 112 DKIPVKNLFSYNNMLSGY-------ANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSG 164
           D++  ++  S+N ++ G+       A LGM      +F  M ER+V++W  +I G A++G
Sbjct: 108 DEMVTRDTISWNALIGGFVRNGKFFAGLGM-----QVFYEMGERNVITWTAVISGLAQNG 162

Query: 165 AVEEGLKFYKVLRRF-SISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVIS 223
             E  LK +K +  + S+  N  ++  +LT C  LE LK   Q+HG ++  G  S++ I 
Sbjct: 163 YHEHSLKLFKEMMSYGSVEPNSLTYLSLLTACSGLEALKEGCQIHGLIMKLGIQSDLCIG 222

Query: 224 SSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPV 283
           S+++D Y+K G + +A              W                 K+F    E + V
Sbjct: 223 SALMDMYSKSGRIGEA--------------W-----------------KIFELAEELDMV 251

Query: 284 SWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFL 343
           S T ++AG+T NG  ++A+++F +M+ + I  + +  S  L    +  SL+ G+QVH F+
Sbjct: 252 SLTVILAGFTHNGCEEEAIQIFLKMLKMGIEIDGNVVSVVLGVFGADTSLRLGQQVHSFV 311

Query: 344 IRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQA 403
           ++ NF  N  V + LI+MYSKCG L++  +VFD    + NS+ WN+MI+A  +HG   +A
Sbjct: 312 VKRNFICNPFVSNGLINMYSKCGALDESMKVFDRMRER-NSVTWNSMIAAFARHGDALKA 370

Query: 404 IRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIE 463
           ++L+ DM     KP  +T   +L+AC+H+GLV++G+ + +SMT D G+ P  EHHAC+++
Sbjct: 371 LQLYEDMQLEGAKPTDVTFLSLLHACSHAGLVKKGMEFLKSMTKDHGMNPRSEHHACVVD 430

Query: 464 LLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSAT 523
           +L +AG   +  N +EK+P +    +W AL G C ++G+  +G+   + L  + P S   
Sbjct: 431 MLGRAGMLSEARNFIEKLPEQPGLLVWQALLGACSLYGDSKIGKYAAEHLFSETPDSPVP 490

Query: 524 HGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVL 583
           + LL++IYS+ G  +   +  + + E    KE  ISWIEI+ KVH+F+V D +HP  +++
Sbjct: 491 YVLLANIYSSEGNWKERARTIRKMKEVGTAKETGISWIEIDKKVHSFTVGDKMHPQTEMI 550

Query: 584 YSVLEQL 590
           Y VL +L
Sbjct: 551 YGVLWEL 557



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 64/271 (23%), Positives = 125/271 (46%), Gaps = 45/271 (16%)

Query: 35  EAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHL 94
           EAI     + + GI +    ++ +L       SL+LG++VH    + +      F+SN L
Sbjct: 268 EAIQIFLKMLKMGIEIDGNVVSVVLGVFGADTSLRLGQQVH-SFVVKRNFICNPFVSNGL 326

Query: 95  ISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNM----AERDV 150
           I+MY KCG+  ++ KVFD++  +N  ++N+M++ +A  G    A  L+++M    A+   
Sbjct: 327 INMYSKCGALDESMKVFDRMRERNSVTWNSMIAAFARHGDALKALQLYEDMQLEGAKPTD 386

Query: 151 VSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQ 210
           V++ +++   + +G V++G++F K + +                    +     R  H  
Sbjct: 387 VTFLSLLHACSHAGLVKKGMEFLKSMTK--------------------DHGMNPRSEH-- 424

Query: 211 VLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDE-TDARDVLTWTTMVSGYAKLGDME- 268
                        + +VD   + G LS+AR   ++  +   +L W  ++   +  GD + 
Sbjct: 425 ------------HACVVDMLGRAGMLSEARNFIEKLPEQPGLLVWQALLGACSLYGDSKI 472

Query: 269 ---SASKLFNEMPEKNPVSWTTLIAGYTRNG 296
              +A  LF+E P+ +PV +  L   Y+  G
Sbjct: 473 GKYAAEHLFSETPD-SPVPYVLLANIYSSEG 502


>gi|449462814|ref|XP_004149135.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g13600-like [Cucumis sativus]
 gi|449523485|ref|XP_004168754.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g13600-like [Cucumis sativus]
          Length = 687

 Score =  336 bits (861), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 180/571 (31%), Positives = 317/571 (55%), Gaps = 40/571 (7%)

Query: 31  GQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFL 90
           G+  EA+     +   G  +   +    L  CA  + LKLG ++H  L          ++
Sbjct: 130 GRFDEALVYFAQMHGHGFLVNEYSFGSALSACAGLQDLKLGSQIH-SLVYRSNYLSDVYM 188

Query: 91  SNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDV 150
            + L+ MY KCG                                +++A+++FD M  R  
Sbjct: 189 GSALVDMYSKCGR-------------------------------VEYAQSVFDEMTVRSR 217

Query: 151 VSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQ 210
           VSWN++I  Y ++G V+E LK +  + +  +  +E + A +++ C  +  +K  +Q+H +
Sbjct: 218 VSWNSLITCYEQNGPVDEALKIFVEMIKCGVEPDEVTLASVVSACATISAIKEGQQIHAR 277

Query: 211 VL-VTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMES 269
           V+    F +++++ ++++D YAKC  +++AR +FD    R V++ T+MVSGYAK   ++ 
Sbjct: 278 VVKCDEFRNDLILGNALLDMYAKCNRINEARIIFDMMPIRSVVSETSMVSGYAKASKVKV 337

Query: 270 ASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACAS 329
           A  +F+ M  K+ ++W  LIAG T+NG  ++AL LF  +    + P  +TF + L ACA+
Sbjct: 338 ARYMFSNMMVKDVITWNALIAGCTQNGENEEALILFRLLKRESVWPTHYTFGNLLNACAN 397

Query: 330 IVSLKHGKQVHGFLIRTNFR------SNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKEN 383
           +  L+ G+Q H  +++  FR      S+  V +SLIDMY KCG + +G +VF     K+ 
Sbjct: 398 LADLQLGRQAHSHVLKHGFRFQYGEDSDVFVGNSLIDMYMKCGSVENGCRVFQHMLEKD- 456

Query: 384 SMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFE 443
            + WN MI    Q+G+  +A+ +F  M+ S   PD +T+  +L AC+H+GL+ EG  YF 
Sbjct: 457 CVSWNAMIVGYAQNGFGNKALEVFCKMLESGEAPDHVTMIGVLCACSHAGLLDEGRYYFR 516

Query: 444 SMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNI 503
           SMT   G++P ++H+ C+++LL +AG  ++  N +E+M  + D+ +W +L   C++H NI
Sbjct: 517 SMTAQHGLMPLKDHYTCMVDLLGRAGYLEEAKNLIEEMSMQPDAIVWGSLLAACKVHRNI 576

Query: 504 DMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEI 563
            +G  VV +L++ +P++S  + LLS++Y+     + V +VR+L+ +R   K+   SWIEI
Sbjct: 577 QLGEYVVKKLLEVDPENSGPYVLLSNMYAENRDWKNVVRVRKLMRQRGVVKQPGCSWIEI 636

Query: 564 ENKVHAFSVSDSLHPMRDVLYSVLEQLAGQM 594
           + +++ F V D  H  +  +Y VL  +  QM
Sbjct: 637 QGELNVFMVKDKRHARKKEIYMVLRTILQQM 667



 Score =  224 bits (572), Expect = 8e-56,   Method: Compositional matrix adjust.
 Identities = 139/486 (28%), Positives = 243/486 (50%), Gaps = 81/486 (16%)

Query: 50  LPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARK 109
           L +   + +L QCA S+S +   RVH  + +       TF+ N LI +Y KCG    ARK
Sbjct: 17  LDSSPFSKLLNQCARSRSARDTSRVHACI-IKSPFASETFIQNRLIDVYGKCGCVDVARK 75

Query: 110 VFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEG 169
           +FD++  +N+FS+N+++  +   G +  A ++F+ M + D  SWN+MI G+ + G  +E 
Sbjct: 76  LFDRMLERNIFSWNSIICAFTKSGFLDDAVHIFEKMPQVDQCSWNSMISGFEQHGRFDEA 135

Query: 170 LKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDA 229
           L ++  +       NE+SF   L+ C  L++LKL  Q+H  V  + +LS+V + S++VD 
Sbjct: 136 LVYFAQMHGHGFLVNEYSFGSALSACAGLQDLKLGSQIHSLVYRSNYLSDVYMGSALVDM 195

Query: 230 YAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLI 289
           Y+KCG +  A+ +FDE   R  ++W ++++ Y + G                PV      
Sbjct: 196 YSKCGRVEYAQSVFDEMTVRSRVSWNSLITCYEQNG----------------PVD----- 234

Query: 290 AGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTN-F 348
                     +AL++F  M+   + P++ T +S + ACA+I ++K G+Q+H  +++ + F
Sbjct: 235 ----------EALKIFVEMIKCGVEPDEVTLASVVSACATISAIKEGQQIHARVVKCDEF 284

Query: 349 RSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNK----ENSML------------------ 386
           R++ I+ ++L+DMY+KC  +N+ R +FD+   +    E SM+                  
Sbjct: 285 RNDLILGNALLDMYAKCNRINEARIIFDMMPIRSVVSETSMVSGYAKASKVKVARYMFSN 344

Query: 387 --------WNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNAC--------- 429
                   WN +I+  TQ+G +E+A+ LF  + R SV P   T   +LNAC         
Sbjct: 345 MMVKDVITWNALIAGCTQNGENEEALILFRLLKRESVWPTHYTFGNLLNACANLADLQLG 404

Query: 430 --THSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDS 487
              HS +++ G  +      D+  + N      LI++  + G  +      + M  E D 
Sbjct: 405 RQAHSHVLKHGFRFQYGEDSDV-FVGNS-----LIDMYMKCGSVENGCRVFQHM-LEKDC 457

Query: 488 YLWNAL 493
             WNA+
Sbjct: 458 VSWNAM 463


>gi|225432410|ref|XP_002276935.1| PREDICTED: pentatricopeptide repeat-containing protein At2g36980,
           mitochondrial-like [Vitis vinifera]
          Length = 623

 Score =  336 bits (861), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 183/546 (33%), Positives = 298/546 (54%), Gaps = 10/546 (1%)

Query: 54  TLAFILQQCAESKSLKLGKRVHLHLKLT--QRKTPTTFLSNHLISMYFKCGSDVDARKVF 111
           T    L  CA    L+ G ++H  + ++  Q   P   + N LI MY KC S   AR+VF
Sbjct: 73  TFTATLSACAGLGELRRGMKIHAQVVVSGCQSSLP---VGNSLIDMYGKCLSATSARRVF 129

Query: 112 DKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLK 171
           +++ + N  S+ ++L  Y + G+   AR +FD M ++  ++WN MI GY + G VE  L 
Sbjct: 130 EEMSIMNEVSWCSLLFAYTSSGLFDVARVVFDGMPKKVEIAWNIMISGYGQCGDVELCLG 189

Query: 172 FYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYA 231
            +K +R  S+  ++++F+ ++    +L+E      +HG ++ +G++  V +S+SI+  Y+
Sbjct: 190 LFKKMREDSLQPDQWTFSALVNALCELQEPSYGYMMHGFIIKSGWVKAVEVSNSILSFYS 249

Query: 232 KCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAG 291
           K G   D  ++F+       ++W  M+  + K+GD   A  +F   PEKN VSWT++I G
Sbjct: 250 KLGCKDDVMKVFESIGILTQVSWNAMIDAHMKIGDTHEAFLVFQLAPEKNVVSWTSMITG 309

Query: 292 YTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSN 351
           Y RNG G++AL  F +MM   I+P+  TF + L AC+S+ +L HGK +HG +I   F + 
Sbjct: 310 YARNGHGEQALSFFVKMMENHIQPDDFTFGAVLHACSSLATLGHGKMIHGSIIHYGFHAY 369

Query: 352 TIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMV 411
             V + L++MY+KCG +      F     K + + WN M+  L  HG+  QA+ L+ +MV
Sbjct: 370 VDVGNGLVNMYAKCGDIQGSNTAFKEILGK-DLVSWNAMLFGLGMHGHATQALELYEEMV 428

Query: 412 RSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGC- 470
            S +KPDK+T   +L  C+HSGL+++G   FESM    G+    EH  C+++LL + G  
Sbjct: 429 ASGMKPDKVTFIGLLMTCSHSGLIEKGQALFESMVSVYGLSQETEHVVCMVDLLGRGGYL 488

Query: 471 --SDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLS 528
             + +L+++  +      S L  AL G C  H  + MG  + + L    PQ   ++ LLS
Sbjct: 489 AQARELVDEYSRTGRAETS-LPEALLGACFAHSEVRMGANLGEYLKVFEPQKEMSYVLLS 547

Query: 529 SIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLE 588
           ++Y   G+ +  E VR+ + +   KK    SWIE+ NKV  F   +  HP  + L  +L 
Sbjct: 548 NLYCVSGQWKEAEMVRKTMTDHGVKKMPGCSWIEVRNKVTVFVAGNHSHPYMEELCKILN 607

Query: 589 QLAGQM 594
            L  +M
Sbjct: 608 FLKFEM 613



 Score =  193 bits (491), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 121/443 (27%), Positives = 217/443 (48%), Gaps = 36/443 (8%)

Query: 118 NLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLR 177
           +LF   + +   A LG +  AR LFD M  +D V+WN M+  Y++ G  ++ L  +  +R
Sbjct: 4   HLFQTTSKIVALAKLGRITSARRLFDEMPHKDTVAWNAMLASYSQLGLHQQALCLFHHMR 63

Query: 178 RFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELS 237
             +   + F+F   L+ C  L EL+   ++H QV+V+G  S++ + +S++D Y KC   +
Sbjct: 64  IANSRPDRFTFTATLSACAGLGELRRGMKIHAQVVVSGCQSSLPVGNSLIDMYGKCLSAT 123

Query: 238 DARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGL 297
            ARR+F+E    + ++W +++  Y   G  + A  +F+ MP+K  ++W  +I+GY + G 
Sbjct: 124 SARRVFEEMSIMNEVSWCSLLFAYTSSGLFDVARVVFDGMPKKVEIAWNIMISGYGQCGD 183

Query: 298 GQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSS 357
            +  L LF +M    ++P+Q TFS+ + A   +    +G  +HGF+I++ +     V +S
Sbjct: 184 VELCLGLFKKMREDSLQPDQWTFSALVNALCELQEPSYGYMMHGFIIKSGWVKAVEVSNS 243

Query: 358 LIDMYSKCGCLNDGRQVFD----LTDNKENSML--------------------------W 387
           ++  YSK GC +D  +VF+    LT    N+M+                          W
Sbjct: 244 ILSFYSKLGCKDDVMKVFESIGILTQVSWNAMIDAHMKIGDTHEAFLVFQLAPEKNVVSW 303

Query: 388 NTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTH 447
            +MI+   ++G+ EQA+  F  M+ + ++PD  T   +L+AC+    +  G     S+ H
Sbjct: 304 TSMITGYARNGHGEQALSFFVKMMENHIQPDDFTFGAVLHACSSLATLGHGKMIHGSIIH 363

Query: 448 DLGIIPNQEHHACLIELLAQAGCSD-QLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMG 506
             G     +    L+ + A+  C D Q  N   K     D   WNA+     +HG+    
Sbjct: 364 -YGFHAYVDVGNGLVNMYAK--CGDIQGSNTAFKEILGKDLVSWNAMLFGLGMHGHATQA 420

Query: 507 RKVVDQLI--DQNPQSSATHGLL 527
            ++ ++++     P      GLL
Sbjct: 421 LELYEEMVASGMKPDKVTFIGLL 443



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 85/310 (27%), Positives = 134/310 (43%), Gaps = 71/310 (22%)

Query: 218 SNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEM 277
           S++  ++S + A AK G ++ ARRLFDE   +D + W  M++ Y++L             
Sbjct: 3   SHLFQTTSKIVALAKLGRITSARRLFDEMPHKDTVAWNAMLASYSQL------------- 49

Query: 278 PEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGK 337
                             GL Q+AL LF  M I   RP++ TF++ L ACA +  L+ G 
Sbjct: 50  ------------------GLHQQALCLFHHMRIANSRPDRFTFTATLSACAGLGELRRGM 91

Query: 338 QVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFD--------------------- 376
           ++H  ++ +  +S+  V +SLIDMY KC      R+VF+                     
Sbjct: 92  KIHAQVVVSGCQSSLPVGNSLIDMYGKCLSATSARRVFEEMSIMNEVSWCSLLFAYTSSG 151

Query: 377 LTD---------NKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILN 427
           L D          K+  + WN MIS   Q G  E  + LF  M   S++PD+ T + ++N
Sbjct: 152 LFDVARVVFDGMPKKVEIAWNIMISGYGQCGDVELCLGLFKKMREDSLQPDQWTFSALVN 211

Query: 428 ACTHSGLVQEGLTYFESMTHDL----GIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPY 483
           A      +QE    +  M H      G +   E    ++   ++ GC D +M   E +  
Sbjct: 212 ALCE---LQE--PSYGYMMHGFIIKSGWVKAVEVSNSILSFYSKLGCKDDVMKVFESIGI 266

Query: 484 EHDSYLWNAL 493
                 WNA+
Sbjct: 267 L-TQVSWNAM 275


>gi|255542634|ref|XP_002512380.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223548341|gb|EEF49832.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 736

 Score =  335 bits (860), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 177/496 (35%), Positives = 282/496 (56%), Gaps = 36/496 (7%)

Query: 97  MYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTM 156
           MYFKCG   DA KVFD +P ++  S+N M+SG+   G +   R +FD M ER+V++W  +
Sbjct: 1   MYFKCGVFSDAVKVFDDMPTRDTVSWNTMVSGFLRNGDLDTGRQVFDEMLERNVITWTAI 60

Query: 157 IIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGF 216
           I G +++   E+ L  +  +R   I  N  ++   LT C  L+ L+  RQ+HG V   G 
Sbjct: 61  ISGLSQNEMYEDSLGLFVQMRCGLIEPNFLTYLSSLTACSGLQALEKGRQIHGLVWKLGI 120

Query: 217 LSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNE 276
            SN+ I S+++D Y+KCG L                               E A ++F  
Sbjct: 121 QSNLCIESALMDLYSKCGSL-------------------------------EDARRVFES 149

Query: 277 MPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHG 336
             E + VS T ++ G+T+NG  ++A+E F +M+ +    + +  S+ L AC    SL  G
Sbjct: 150 AVELDEVSMTVILVGFTQNGFEEEAIEFFVKMVNIGTEVDPNMVSAVLGACGVDTSLGLG 209

Query: 337 KQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQ 396
           KQ+H  +I+ +  SN  V + LI+MYSKCG L +  +VF+    + NS+ WN+MI+A  +
Sbjct: 210 KQIHSLVIKRSLGSNPFVGNGLINMYSKCGELQESIKVFNGLTCR-NSVSWNSMIAAFAR 268

Query: 397 HGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQE 456
           HG   +A+RL+ +M++    P  +T   +L+AC+H GLV +G+ + +SMT   GI P  E
Sbjct: 269 HGDGFRALRLYEEMIQEGAVPTDLTFLSLLHACSHVGLVDKGMKFLKSMTKVYGISPRAE 328

Query: 457 HHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQ 516
           H+AC++++L +AG  ++  + +E++  + D  +W AL G C I G+ ++G+   +QL+  
Sbjct: 329 HYACVVDMLGRAGLLNEAKSLIERLSIKPDVLIWQALLGACSIRGDTEIGKYAAEQLLLL 388

Query: 517 NPQSSATHGLLSSIYSALGKGRLVEKVRQL--INERQFKKEQAISWIEIENKVHAFSVSD 574
            P+  A + LL++IYS+  KGR  E+ R +  + E    KE  ISWIEIE KVH+F V D
Sbjct: 389 EPKKPAPYVLLANIYSS--KGRWDERARTIKRMKEMGVAKETGISWIEIEKKVHSFVVED 446

Query: 575 SLHPMRDVLYSVLEQL 590
             HP  +++Y VL +L
Sbjct: 447 KKHPQAEIIYGVLAEL 462



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 76/351 (21%), Positives = 149/351 (42%), Gaps = 78/351 (22%)

Query: 59  LQQCAESKSLKLGKRVH-LHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVK 117
           L  C+  ++L+ G+++H L  KL  +      + + L+ +Y KCGS  DAR+V       
Sbjct: 96  LTACSGLQALEKGRQIHGLVWKLGIQSN--LCIESALMDLYSKCGSLEDARRV------- 146

Query: 118 NLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLR 177
                                   F++  E D VS   +++G+ ++G  EE ++F+  + 
Sbjct: 147 ------------------------FESAVELDEVSMTVILVGFTQNGFEEEAIEFFVKMV 182

Query: 178 RFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELS 237
                 +    + +L  C     L L +Q+H  V+     SN  + + +++ Y+KCGEL 
Sbjct: 183 NIGTEVDPNMVSAVLGACGVDTSLGLGKQIHSLVIKRSLGSNPFVGNGLINMYSKCGELQ 242

Query: 238 DARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGL 297
           ++ ++F+    R+ ++W +M++ +A+ GD   A +L+ EM ++  V              
Sbjct: 243 ESIKVFNGLTCRNSVSWNSMIAAFARHGDGFRALRLYEEMIQEGAV-------------- 288

Query: 298 GQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHG-------KQVHGFLIRTNFRS 350
                            P   TF S L AC+ +  +  G        +V+G   R     
Sbjct: 289 -----------------PTDLTFLSLLHACSHVGLVDKGMKFLKSMTKVYGISPRAEH-- 329

Query: 351 NTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDE 401
                + ++DM  + G LN+ + + +    K + ++W  ++ A +  G  E
Sbjct: 330 ----YACVVDMLGRAGLLNEAKSLIERLSIKPDVLIWQALLGACSIRGDTE 376



 Score = 72.4 bits (176), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 69/295 (23%), Positives = 122/295 (41%), Gaps = 47/295 (15%)

Query: 24  FLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVH-LHLKLTQ 82
            +     G   EAI     +   G  +    ++ +L  C    SL LGK++H L +K + 
Sbjct: 162 LVGFTQNGFEEEAIEFFVKMVNIGTEVDPNMVSAVLGACGVDTSLGLGKQIHSLVIKRSL 221

Query: 83  RKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLF 142
              P  F+ N LI+MY KCG   ++ KVF+ +  +N  S+N+M++ +A  G    A  L+
Sbjct: 222 GSNP--FVGNGLINMYSKCGELQESIKVFNGLTCRNSVSWNSMIAAFARHGDGFRALRLY 279

Query: 143 DNMAERDVV----SWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKL 198
           + M +   V    ++ +++   +  G V++G+KF K + +                    
Sbjct: 280 EEMIQEGAVPTDLTFLSLLHACSHVGLVDKGMKFLKSMTK-------------------- 319

Query: 199 EELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDAR-DVLTWTTM 257
                         V G        + +VD   + G L++A+ L +    + DVL W  +
Sbjct: 320 --------------VYGISPRAEHYACVVDMLGRAGLLNEAKSLIERLSIKPDVLIWQAL 365

Query: 258 VSGYAKLGDME----SASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRM 308
           +   +  GD E    +A +L    P+K P  +  L   Y+  G   +      RM
Sbjct: 366 LGACSIRGDTEIGKYAAEQLLLLEPKK-PAPYVLLANIYSSKGRWDERARTIKRM 419


>gi|413953302|gb|AFW85951.1| hypothetical protein ZEAMMB73_518426 [Zea mays]
          Length = 620

 Score =  335 bits (860), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 193/561 (34%), Positives = 304/561 (54%), Gaps = 69/561 (12%)

Query: 92  NHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNM-AERDV 150
           N LI      G   DARK+FD  P +++ S+  ++S YA  GM++ AR+LFD   A R+V
Sbjct: 44  NRLIVDLAAAGRVWDARKLFDGTPERDVVSWTALVSAYARRGMLRDARSLFDRSDARRNV 103

Query: 151 VSWNTMIIGYAKSGAVEEG------------------LKFYKVLRRFSISCNEF------ 186
           V+W  ++ GYA++G V+E                   L+ Y V  R   +C  F      
Sbjct: 104 VTWTALLSGYARAGLVDEAEVLFQRMPQRNVVSWNTMLEAYAVAGRAGDACALFDRMPVR 163

Query: 187 ---SFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLF 243
              S+  +L + V+   +   R++ G++       +V+  +++VD  A+ G + +AR LF
Sbjct: 164 DAGSWNILLAMLVRSGSVDKARELFGRMPE----RDVMAWTTMVDGVARSGNVDEARLLF 219

Query: 244 DETDARDVLTWTTMVSGYAKL-------------------------------GDMESASK 272
           D    R+V++W  M+SGY +                                 D++ A K
Sbjct: 220 DSMPERNVVSWNAMISGYTRNHRLDEALDLFTKMPHRDIASCNIMITGFIQNKDLKRARK 279

Query: 273 LFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVS 332
           LF+EMPE+N V+WTT++ GY +    + +L LF  M++  IRPNQ TF   L AC+ + +
Sbjct: 280 LFDEMPERNVVTWTTMMNGYLKGKQSELSLGLFRGMLMSGIRPNQVTFLGALDACSDLAT 339

Query: 333 LKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMIS 392
           L  GKQVH  + +T F+ +T V S+L+++Y+KCG +   R++FDL+  K+  + WN +I+
Sbjct: 340 LCEGKQVHQMICKTAFQVDTFVGSALMNVYAKCGEVGLARKLFDLSREKD-LISWNGIIA 398

Query: 393 ALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGII 452
           A   HG   +AI L+  M  +  +P+ +T  V+L+AC+HSGLV EGL  FESM +D  I 
Sbjct: 399 AYAHHGVGIEAIHLYEKMQGNGYRPNDVTYVVLLSACSHSGLVDEGLKIFESMVNDRSIA 458

Query: 453 PNQEHHACLIELLAQAGCSD---QLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKV 509
              EH+ CLI+L ++AG  D   +L++ L+  P      +W+AL G C  HGN  +G   
Sbjct: 459 VRDEHYTCLIDLCSRAGRLDDAKRLIHYLKIKPAS--GSVWSALLGGCNAHGNESIGNLA 516

Query: 510 VDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHA 569
              LI   P ++ T+ LLS+IY++ GK +   ++R  +N R  KK+   SWIE+ NKVH 
Sbjct: 517 ARNLIQAEPDNAGTYTLLSNIYASAGKWKEAAEIRSEMNNRGLKKQPGCSWIEVANKVHV 576

Query: 570 FSVSDSLHPMRDVLYSVLEQL 590
           F   D  H   D++Y +L+ +
Sbjct: 577 FVARDKSHSESDLIYGLLQNI 597



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 63/242 (26%), Positives = 121/242 (50%), Gaps = 11/242 (4%)

Query: 47  GIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVD 106
           GIR    T    L  C++  +L  GK+VH  +  T  +   TF+ + L+++Y KCG    
Sbjct: 319 GIRPNQVTFLGALDACSDLATLCEGKQVHQMICKTAFQV-DTFVGSALMNVYAKCGEVGL 377

Query: 107 ARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMA----ERDVVSWNTMIIGYAK 162
           ARK+FD    K+L S+N +++ YA+ G+   A +L++ M       + V++  ++   + 
Sbjct: 378 ARKLFDLSREKDLISWNGIIAAYAHHGVGIEAIHLYEKMQGNGYRPNDVTYVVLLSACSH 437

Query: 163 SGAVEEGLK-FYKVLRRFSISCNEFSFAGILTICVKLEEL-KLTRQVHGQVL--VTGFLS 218
           SG V+EGLK F  ++   SI+  +  +  ++ +C +   L    R +H   +   +G + 
Sbjct: 438 SGLVDEGLKIFESMVNDRSIAVRDEHYTCLIDLCSRAGRLDDAKRLIHYLKIKPASGSVW 497

Query: 219 NVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMP 278
           + ++           G L+ AR L  + +  +  T+T + + YA  G  + A+++ +EM 
Sbjct: 498 SALLGGCNAHGNESIGNLA-ARNLI-QAEPDNAGTYTLLSNIYASAGKWKEAAEIRSEMN 555

Query: 279 EK 280
            +
Sbjct: 556 NR 557


>gi|116310106|emb|CAH67125.1| H0315E07.3 [Oryza sativa Indica Group]
 gi|222628896|gb|EEE61028.1| hypothetical protein OsJ_14863 [Oryza sativa Japonica Group]
          Length = 655

 Score =  335 bits (859), Expect = 4e-89,   Method: Compositional matrix adjust.
 Identities = 186/540 (34%), Positives = 289/540 (53%), Gaps = 59/540 (10%)

Query: 94  LISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSW 153
           L++ Y +CG   +AR++F++IP +N+ S+N M+SGYA  GM+K AR LFD M  RD VSW
Sbjct: 102 LLTGYARCGRVAEARELFNRIPDRNVVSWNAMVSGYARNGMVKRARELFDMMPWRDDVSW 161

Query: 154 NTMIIGYAK--------------------------SGAVEEG------LKFYKVLRRFSI 181
            TMI GY K                          SG VE G      + F ++  R  +
Sbjct: 162 LTMISGYIKRKHVREARELFDSMPSPPTSVCNALLSGYVELGYMRAAEVLFGQMQTRNPV 221

Query: 182 SCN----EFSFAGILTICVKL-EELKLTRQVHGQVLVTGFLSN----------------- 219
           S N     ++ AG + I  +L +E+     +    ++ G+L N                 
Sbjct: 222 SWNVMITGYARAGSMGIAQRLFDEMPEKDVLSRTAIMRGYLQNGSVDAAWKVFKDMPHRD 281

Query: 220 VVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPE 279
            V  ++++D + +   L DA +LF E   RD ++W  ++ GY + GDM+SA+  F   P 
Sbjct: 282 TVAWNTMMDGFVRNDRLDDALKLFSEMPDRDQISWNAILQGYVQQGDMDSANAWFRRAPN 341

Query: 280 KNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQV 339
           K+ +SW TLI+GY   G    AL L + M+   ++P+Q T S  +  CAS+VSL  GK V
Sbjct: 342 KDAISWNTLISGYKDEG----ALSLLSEMIRGGLKPDQATLSVVISICASLVSLGCGKMV 397

Query: 340 HGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGY 399
           H + I+T F  + +VMSSLI MYSKCG +++  QVF+L   ++ ++ WN MI+    HG 
Sbjct: 398 HLWAIKTGFEHDALVMSSLISMYSKCGLISEASQVFELILQRD-TVTWNAMIATYAYHGL 456

Query: 400 DEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHA 459
            ++A+++F  M ++  +PD  T   IL+AC H G + EG  +F SM  D  ++P  +H++
Sbjct: 457 ADEALKVFDMMTKAGFRPDHATFLSILSACAHKGYLYEGCYHFRSMQEDWNLVPRSDHYS 516

Query: 460 CLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQ 519
           C+++LL ++G   Q  +   ++P +H +  W  L  VC  HG I +G  +   ++   P 
Sbjct: 517 CMVDLLGRSGFIHQAYDFTRRIPSDHRTTAWETLFSVCNSHGEIQLGEIIARNVLKARPS 576

Query: 520 SSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPM 579
               + LLS+IY+A         VR  + ER  KKE   SWIE++ +V  FS +DS HP+
Sbjct: 577 DGGMYTLLSNIYAAKEMWSSAASVRGFMKERGLKKETGCSWIELKGEVVTFSSNDSNHPL 636



 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 126/466 (27%), Positives = 192/466 (41%), Gaps = 94/466 (20%)

Query: 142 FDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEEL 201
           FD M+ER+V +WN M+ G  ++  + E  K +  +       N  S+A +LT   +   +
Sbjct: 57  FDEMSERNVFTWNCMVSGLIRNRMLAEARKVFDAMP----VRNSVSWAALLTGYARCGRV 112

Query: 202 KLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGY 261
              R++  ++       NVV  +++V  YA+ G +  AR LFD    RD ++W TM+SGY
Sbjct: 113 AEARELFNRIPD----RNVVSWNAMVSGYARNGMVKRARELFDMMPWRDDVSWLTMISGY 168

Query: 262 AK-------------------------------LGDMESASKLFNEMPEKNPVSWTTLIA 290
            K                               LG M +A  LF +M  +NPVSW  +I 
Sbjct: 169 IKRKHVREARELFDSMPSPPTSVCNALLSGYVELGYMRAAEVLFGQMQTRNPVSWNVMIT 228

Query: 291 GYTRNGLGQKALELFTRMMILRIRPNQHTFS------------SCLCACASIVSLKHGKQ 338
           GY R G    A  LF  M      P +   S            S   A      + H   
Sbjct: 229 GYARAGSMGIAQRLFDEM------PEKDVLSRTAIMRGYLQNGSVDAAWKVFKDMPHRDT 282

Query: 339 VHGFLIRTNFRSN-----------------TIVMSSLIDMYSKCGCLNDGRQVFDLTDNK 381
           V    +   F  N                  I  ++++  Y + G ++     F    NK
Sbjct: 283 VAWNTMMDGFVRNDRLDDALKLFSEMPDRDQISWNAILQGYVQQGDMDSANAWFRRAPNK 342

Query: 382 ENSMLWNTMISALTQHGY-DEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLT 440
           + ++ WNT+IS     GY DE A+ L  +M+R  +KPD+ TL+V+++ C  + LV  G  
Sbjct: 343 D-AISWNTLIS-----GYKDEGALSLLSEMIRGGLKPDQATLSVVISIC--ASLVSLGCG 394

Query: 441 YFESMTHDLGIIPNQEHHA----CLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGV 496
               M H   I    EH A     LI + ++ G   +  +Q+ ++  + D+  WNA+   
Sbjct: 395 ---KMVHLWAIKTGFEHDALVMSSLISMYSKCGLISE-ASQVFELILQRDTVTWNAMIAT 450

Query: 497 CRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALG-KGRLVE 541
              HG  D   KV D +     +    H    SI SA   KG L E
Sbjct: 451 YAYHGLADEALKVFDMMTKAGFRPD--HATFLSILSACAHKGYLYE 494



 Score = 63.2 bits (152), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 50/169 (29%), Positives = 87/169 (51%), Gaps = 6/169 (3%)

Query: 13  KNLPNNCLIQSFLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGK 72
           +  PN   I S+ +LIS  +   A+S L  + + G++    TL+ ++  CA   SL  GK
Sbjct: 337 RRAPNKDAI-SWNTLISGYKDEGALSLLSEMIRGGLKPDQATLSVVISICASLVSLGCGK 395

Query: 73  RVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANL 132
            VHL    T  +     +S+ LISMY KCG   +A +VF+ I  ++  ++N M++ YA  
Sbjct: 396 MVHLWAIKTGFEHDALVMSS-LISMYSKCGLISEASQVFELILQRDTVTWNAMIATYAYH 454

Query: 133 GMMKHARNLFDNMAER----DVVSWNTMIIGYAKSGAVEEGLKFYKVLR 177
           G+   A  +FD M +     D  ++ +++   A  G + EG   ++ ++
Sbjct: 455 GLADEALKVFDMMTKAGFRPDHATFLSILSACAHKGYLYEGCYHFRSMQ 503


>gi|449447707|ref|XP_004141609.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g33350-like [Cucumis sativus]
 gi|449510706|ref|XP_004163739.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g33350-like [Cucumis sativus]
          Length = 563

 Score =  335 bits (858), Expect = 5e-89,   Method: Compositional matrix adjust.
 Identities = 175/471 (37%), Positives = 272/471 (57%), Gaps = 14/471 (2%)

Query: 137 HARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYK-VLRRFSISCNEFSFAGILTIC 195
           +AR +FDN+   +V  +  MI  YA     +     Y+ ++RR +I  N F +  +L  C
Sbjct: 94  YARYIFDNLTSPNVFLYTAMITAYASYPDPKAAFLLYRNMVRRGAIRPNNFIYPHVLRSC 153

Query: 196 VKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAK-CGELSDARRLFDETDARDVLTW 254
             +     T+ VH QVL +GF    V+ ++IVD+Y++   ++  AR++FDE   R V++W
Sbjct: 154 PDVLGSNATKMVHTQVLKSGFGGYPVVQTAIVDSYSRFSSDIGSARQMFDEMLERTVVSW 213

Query: 255 TTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRI- 313
           T M+SGYA+LG+ +SA +LF  MPE++  +W  LIAG  +NG   +A+ LF RM++L + 
Sbjct: 214 TAMISGYARLGNFDSAIELFESMPERDVPAWNALIAGCAQNGFFCEAIWLFKRMVLLALE 273

Query: 314 --------RPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKC 365
                   +PN+ T  S L AC     L  GK +HG++ +T    ++ + ++L+DMY KC
Sbjct: 274 GNNNDRENKPNKTTLGSALSACGHTGMLHLGKWIHGYVFKTYPGQDSFISNALLDMYGKC 333

Query: 366 GCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVR--SSVKPDKITLA 423
           G L   R+VFD+   K N   WN++I+ L  HG+   AI LF +++     VKP+++T  
Sbjct: 334 GNLKVARRVFDMITLK-NLTSWNSLINCLALHGHSGSAIDLFAELIHCGDGVKPNEVTFV 392

Query: 424 VILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPY 483
            +LNACTH GLV++G +YFE M  D  I P  EH  CLI+LL +AG  ++ M  +  M  
Sbjct: 393 GVLNACTHGGLVEKGYSYFEMMRRDYDIEPQIEHFGCLIDLLGRAGRFEEAMEVVRGMNI 452

Query: 484 EHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKV 543
           E D  +W +L   C+IHG  D+    V +LI+ +P++     +L++IY+  GK   V KV
Sbjct: 453 EPDEVVWGSLLNACKIHGRSDLAEYSVKKLIEMDPKNGGYRIMLANIYAEFGKWDEVRKV 512

Query: 544 RQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQM 594
           R+L+ E+   K    SWIE++N+V+ F   D  HP  + +Y  LE +   M
Sbjct: 513 RRLLKEKNAYKTPGCSWIEVDNQVYQFYSFDMSHPSVEEIYKTLESMISFM 563



 Score =  113 bits (283), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 100/402 (24%), Positives = 173/402 (43%), Gaps = 75/402 (18%)

Query: 43  LAQRGIRLPAETL-AFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKC 101
           + +RG   P   +   +L+ C +       K VH  + L         +   ++  Y + 
Sbjct: 133 MVRRGAIRPNNFIYPHVLRSCPDVLGSNATKMVHTQV-LKSGFGGYPVVQTAIVDSYSRF 191

Query: 102 GSDV-DARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGY 160
            SD+  AR++FD++  + + S+  M+SGYA LG    A  LF++M ERDV +WN +I G 
Sbjct: 192 SSDIGSARQMFDEMLERTVVSWTAMISGYARLGNFDSAIELFESMPERDVPAWNALIAGC 251

Query: 161 AKSGAVEEGLKFYKVLRRFSISC---------NEFSFAGILTICVKLEELKLTRQVHGQV 211
           A++G   E +  +K +   ++           N+ +    L+ C     L L + +HG V
Sbjct: 252 AQNGFFCEAIWLFKRMVLLALEGNNNDRENKPNKTTLGSALSACGHTGMLHLGKWIHGYV 311

Query: 212 LVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESAS 271
             T    +  IS++++D Y KCG L  ARR+FD    +++ +W ++++  A  G   SA 
Sbjct: 312 FKTYPGQDSFISNALLDMYGKCGNLKVARRVFDMITLKNLTSWNSLINCLALHGHSGSAI 371

Query: 272 KLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIV 331
            LF E+                  G G              ++PN+ TF   L AC    
Sbjct: 372 DLFAEL---------------IHCGDG--------------VKPNEVTFVGVLNAC---- 398

Query: 332 SLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMI 391
                   HG L+   +        S  +M          R+ +D+    E+   +  +I
Sbjct: 399 -------THGGLVEKGY--------SYFEMM---------RRDYDIEPQIEH---FGCLI 431

Query: 392 SALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSG 433
             L + G  E+A+ +   M   +++PD++    +LNAC   G
Sbjct: 432 DLLGRAGRFEEAMEVVRGM---NIEPDEVVWGSLLNACKIHG 470



 Score = 72.4 bits (176), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 81/350 (23%), Positives = 135/350 (38%), Gaps = 59/350 (16%)

Query: 188 FAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVD-AYAKCGELSDARRLFDET 246
           F   L  C  L  LK   Q+ G ++  G       +  +V        +L  AR +FD  
Sbjct: 46  FVAALEKCSNLNHLK---QLQGFLISHGHSQTQFFAFKLVRFCNLTLADLCYARYIFDNL 102

Query: 247 DARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFT 306
            + +V  +T M++ YA   D ++A  L+  M                R G          
Sbjct: 103 TSPNVFLYTAMITAYASYPDPKAAFLLYRNM---------------VRRG---------- 137

Query: 307 RMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCG 366
                 IRPN   +   L +C  ++     K VH  ++++ F    +V ++++D YS+  
Sbjct: 138 -----AIRPNNFIYPHVLRSCPDVLGSNATKMVHTQVLKSGFGGYPVVQTAIVDSYSRFS 192

Query: 367 C-LNDGRQVFDLTDNKENSML-WNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAV 424
             +   RQ+FD  +  E +++ W  MIS   + G  + AI LF  M    V      +A 
Sbjct: 193 SDIGSARQMFD--EMLERTVVSWTAMISGYARLGNFDSAIELFESMPERDVPAWNALIA- 249

Query: 425 ILNACTHSGLVQEGLTYFESMT--------HDLGIIPNQEHHACLIELLAQAG---CSDQ 473
               C  +G   E +  F+ M         +D    PN+      +      G       
Sbjct: 250 ---GCAQNGFFCEAIWLFKRMVLLALEGNNNDRENKPNKTTLGSALSACGHTGMLHLGKW 306

Query: 474 LMNQLEKMPYEHDSYLWNAL---HGVCRIHGNIDMGRKVVDQLIDQNPQS 520
           +   + K     DS++ NAL   +G C   GN+ + R+V D +  +N  S
Sbjct: 307 IHGYVFKTYPGQDSFISNALLDMYGKC---GNLKVARRVFDMITLKNLTS 353


>gi|347954540|gb|AEP33770.1| organelle transcript processing 82, partial [Raphanus sativus]
          Length = 675

 Score =  335 bits (858), Expect = 5e-89,   Method: Compositional matrix adjust.
 Identities = 193/561 (34%), Positives = 300/561 (53%), Gaps = 51/561 (9%)

Query: 54  TLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDK 113
           +  F+L+ CA+SK+ + G+++H  + L        ++   LISMY + G   DARKVFD 
Sbjct: 66  SFPFLLKSCAKSKAFEEGRQIHAQV-LKLGCGLDRYVHTSLISMYARNGGLEDARKVFDA 124

Query: 114 IPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFY 173
              +++ S   +++GYA+ G  + AR +FD + ERDVVSWN MI GY ++G  EE L+ +
Sbjct: 125 SSHRDVVSCTALITGYASRGDFRSARKVFDEITERDVVSWNAMITGYVENGRYEEALELF 184

Query: 174 KVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVT----GFLSNVVISSSIVDA 229
           K + R ++  +E +   +++ C +   ++L RQVH  V       GF S++ I ++++D 
Sbjct: 185 KEMMRTNVRPDEGTLVSVVSACAQSGSIELGRQVHSWVDDDDDDHGFSSSLKIVNALIDL 244

Query: 230 YAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLI 289
           Y+KCG                               D+E+A  LF  +  K+ VSW TLI
Sbjct: 245 YSKCG-------------------------------DVETAFGLFEGLSCKDVVSWNTLI 273

Query: 290 AGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRT--N 347
            GYT   L ++AL LF  M+     PN  T  S L ACA + ++  G+ +H ++ +    
Sbjct: 274 GGYTHTNLYKEALLLFQEMLRSGECPNDVTLLSVLPACAHLGAIDIGRWIHVYIDKKLKG 333

Query: 348 FRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSML------WNTMISALTQHGYDE 401
             + T + +SLIDMY+KCG +    QVF       NSML      WN MI     HG   
Sbjct: 334 VTNETSLRTSLIDMYAKCGDIEAAHQVF-------NSMLYRSLSSWNAMIFGFAMHGRAN 386

Query: 402 QAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACL 461
            A  LF  M  + V+PD IT   +L+AC+HSGL+  G   F+SMT D  + P  EH+ C+
Sbjct: 387 AAFDLFSRMRGNRVEPDDITFVGLLSACSHSGLLDLGRQIFKSMTQDYNLTPKLEHYGCM 446

Query: 462 IELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSS 521
           I+LL  +G   +    +  MP E D  +W +L   C+ HGN+++      +LI   P++S
Sbjct: 447 IDLLGHSGLFKEAEEMIHTMPMEPDGVIWCSLLKACKKHGNLELAESFAQKLIKIEPENS 506

Query: 522 ATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRD 581
            ++ LLS+IY+  G+   V +VR ++N +  KK    S IE+++ VH F + D LHP R 
Sbjct: 507 GSYVLLSNIYATAGRWEDVARVRGVLNGKGMKKVPGCSSIEVDSVVHEFIIGDKLHPRRR 566

Query: 582 VLYSVLEQLAGQMGEDAPSLD 602
            +Y +LE++  Q+ E   + D
Sbjct: 567 EIYHMLEEMDVQLEEAGFAPD 587



 Score =  209 bits (533), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 123/372 (33%), Positives = 202/372 (54%), Gaps = 7/372 (1%)

Query: 135 MKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTI 194
           + +A ++F+ + E +++ WNTM+ G+A S      L+ Y  +       N +SF  +L  
Sbjct: 14  LPYAISVFETIQEPNLLIWNTMLRGHASSSDPVSALEMYVRMVSLGHLPNSYSFPFLLKS 73

Query: 195 CVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTW 254
           C K +  +  RQ+H QVL  G   +  + +S++  YA+ G L DAR++FD +  RDV++ 
Sbjct: 74  CAKSKAFEEGRQIHAQVLKLGCGLDRYVHTSLISMYARNGGLEDARKVFDASSHRDVVSC 133

Query: 255 TTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIR 314
           T +++GYA  GD  SA K+F+E+ E++ VSW  +I GY  NG  ++ALELF  MM   +R
Sbjct: 134 TALITGYASRGDFRSARKVFDEITERDVVSWNAMITGYVENGRYEEALELFKEMMRTNVR 193

Query: 315 PNQHTFSSCLCACASIVSLKHGKQVHGFLIRT----NFRSNTIVMSSLIDMYSKCGCLND 370
           P++ T  S + ACA   S++ G+QVH ++        F S+  ++++LID+YSKCG +  
Sbjct: 194 PDEGTLVSVVSACAQSGSIELGRQVHSWVDDDDDDHGFSSSLKIVNALIDLYSKCGDVET 253

Query: 371 GRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACT 430
              +F+    K + + WNT+I   T     ++A+ LF +M+RS   P+ +TL  +L AC 
Sbjct: 254 AFGLFEGLSCK-DVVSWNTLIGGYTHTNLYKEALLLFQEMLRSGECPNDVTLLSVLPACA 312

Query: 431 HSGLVQEGLTYFESMTHDLGIIPNQEH-HACLIELLAQAGCSDQLMNQLEKMPYEHDSYL 489
           H G +  G      +   L  + N+      LI++ A+ G  +        M Y   S  
Sbjct: 313 HLGAIDIGRWIHVYIDKKLKGVTNETSLRTSLIDMYAKCGDIEAAHQVFNSMLYRSLSS- 371

Query: 490 WNALHGVCRIHG 501
           WNA+     +HG
Sbjct: 372 WNAMIFGFAMHG 383



 Score =  107 bits (268), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 87/416 (20%), Positives = 171/416 (41%), Gaps = 73/416 (17%)

Query: 18  NCLIQSFLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLH 77
           N +I  +   +  G+  EA+     + +  +R    TL  ++  CA+S S++LG++VH  
Sbjct: 165 NAMITGY---VENGRYEEALELFKEMMRTNVRPDEGTLVSVVSACAQSGSIELGRQVHSW 221

Query: 78  LKLTQRK---TPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGM 134
           +         + +  + N LI +Y KCG    A  +F+ +  K++ S+N ++ GY +  +
Sbjct: 222 VDDDDDDHGFSSSLKIVNALIDLYSKCGDVETAFGLFEGLSCKDVVSWNTLIGGYTHTNL 281

Query: 135 MKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTI 194
            K A  LF  M                +SG                   N+ +   +L  
Sbjct: 282 YKEALLLFQEM---------------LRSGECP----------------NDVTLLSVLPA 310

Query: 195 CVKLEELKLTRQVHGQV--LVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVL 252
           C  L  + + R +H  +   + G  +   + +S++D YAKCG++  A ++F+    R + 
Sbjct: 311 CAHLGAIDIGRWIHVYIDKKLKGVTNETSLRTSLIDMYAKCGDIEAAHQVFNSMLYRSLS 370

Query: 253 TWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILR 312
           +W  M+ G+A                                +G    A +LF+RM   R
Sbjct: 371 SWNAMIFGFAM-------------------------------HGRANAAFDLFSRMRGNR 399

Query: 313 IRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRT-NFRSNTIVMSSLIDMYSKCGCLNDG 371
           + P+  TF   L AC+    L  G+Q+   + +  N          +ID+    G   + 
Sbjct: 400 VEPDDITFVGLLSACSHSGLLDLGRQIFKSMTQDYNLTPKLEHYGCMIDLLGHSGLFKEA 459

Query: 372 RQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILN 427
            ++      + + ++W +++ A  +HG  E A      +++  ++P+     V+L+
Sbjct: 460 EEMIHTMPMEPDGVIWCSLLKACKKHGNLELAESFAQKLIK--IEPENSGSYVLLS 513


>gi|68611229|emb|CAE03043.3| OSJNBa0084A10.18 [Oryza sativa Japonica Group]
          Length = 729

 Score =  335 bits (858), Expect = 5e-89,   Method: Compositional matrix adjust.
 Identities = 186/540 (34%), Positives = 289/540 (53%), Gaps = 59/540 (10%)

Query: 94  LISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSW 153
           L++ Y +CG   +AR++F++IP +N+ S+N M+SGYA  GM+K AR LFD M  RD VSW
Sbjct: 102 LLTGYARCGRVAEARELFNRIPDRNVVSWNAMVSGYARNGMVKRARELFDMMPWRDDVSW 161

Query: 154 NTMIIGYAK--------------------------SGAVEEG------LKFYKVLRRFSI 181
            TMI GY K                          SG VE G      + F ++  R  +
Sbjct: 162 LTMISGYIKRKHVREARELFDSMPSPPTSVCNALLSGYVELGYMRAAEVLFGQMQTRNPV 221

Query: 182 SCN----EFSFAGILTICVKL-EELKLTRQVHGQVLVTGFLSN----------------- 219
           S N     ++ AG + I  +L +E+     +    ++ G+L N                 
Sbjct: 222 SWNVMITGYARAGSMGIAQRLFDEMPEKDVLSRTAIMRGYLQNGSVDAAWKVFKDMPHRD 281

Query: 220 VVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPE 279
            V  ++++D + +   L DA +LF E   RD ++W  ++ GY + GDM+SA+  F   P 
Sbjct: 282 TVAWNTMMDGFVRNDRLDDALKLFSEMPDRDQISWNAILQGYVQQGDMDSANAWFRRAPN 341

Query: 280 KNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQV 339
           K+ +SW TLI+GY   G    AL L + M+   ++P+Q T S  +  CAS+VSL  GK V
Sbjct: 342 KDAISWNTLISGYKDEG----ALSLLSEMIRGGLKPDQATLSVVISICASLVSLGCGKMV 397

Query: 340 HGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGY 399
           H + I+T F  + +VMSSLI MYSKCG +++  QVF+L   ++ ++ WN MI+    HG 
Sbjct: 398 HLWAIKTGFEHDALVMSSLISMYSKCGLISEASQVFELILQRD-TVTWNAMIATYAYHGL 456

Query: 400 DEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHA 459
            ++A+++F  M ++  +PD  T   IL+AC H G + EG  +F SM  D  ++P  +H++
Sbjct: 457 ADEALKVFDMMTKAGFRPDHATFLSILSACAHKGYLYEGCYHFRSMQEDWNLVPRSDHYS 516

Query: 460 CLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQ 519
           C+++LL ++G   Q  +   ++P +H +  W  L  VC  HG I +G  +   ++   P 
Sbjct: 517 CMVDLLGRSGFIHQAYDFTRRIPSDHRTTAWETLFSVCNSHGEIQLGEIIARNVLKARPS 576

Query: 520 SSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPM 579
               + LLS+IY+A         VR  + ER  KKE   SWIE++ +V  FS +DS HP+
Sbjct: 577 DGGMYTLLSNIYAAKEMWSSAASVRGFMKERGLKKETGCSWIELKGEVVTFSSNDSNHPL 636



 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 126/466 (27%), Positives = 192/466 (41%), Gaps = 94/466 (20%)

Query: 142 FDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEEL 201
           FD M+ER+V +WN M+ G  ++  + E  K +  +       N  S+A +LT   +   +
Sbjct: 57  FDEMSERNVFTWNCMVSGLIRNRMLAEARKVFDAMP----VRNSVSWAALLTGYARCGRV 112

Query: 202 KLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGY 261
              R++  ++       NVV  +++V  YA+ G +  AR LFD    RD ++W TM+SGY
Sbjct: 113 AEARELFNRIPD----RNVVSWNAMVSGYARNGMVKRARELFDMMPWRDDVSWLTMISGY 168

Query: 262 AK-------------------------------LGDMESASKLFNEMPEKNPVSWTTLIA 290
            K                               LG M +A  LF +M  +NPVSW  +I 
Sbjct: 169 IKRKHVREARELFDSMPSPPTSVCNALLSGYVELGYMRAAEVLFGQMQTRNPVSWNVMIT 228

Query: 291 GYTRNGLGQKALELFTRMMILRIRPNQHTFS------------SCLCACASIVSLKHGKQ 338
           GY R G    A  LF  M      P +   S            S   A      + H   
Sbjct: 229 GYARAGSMGIAQRLFDEM------PEKDVLSRTAIMRGYLQNGSVDAAWKVFKDMPHRDT 282

Query: 339 VHGFLIRTNFRSN-----------------TIVMSSLIDMYSKCGCLNDGRQVFDLTDNK 381
           V    +   F  N                  I  ++++  Y + G ++     F    NK
Sbjct: 283 VAWNTMMDGFVRNDRLDDALKLFSEMPDRDQISWNAILQGYVQQGDMDSANAWFRRAPNK 342

Query: 382 ENSMLWNTMISALTQHGY-DEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLT 440
           + ++ WNT+IS     GY DE A+ L  +M+R  +KPD+ TL+V+++ C  + LV  G  
Sbjct: 343 D-AISWNTLIS-----GYKDEGALSLLSEMIRGGLKPDQATLSVVISIC--ASLVSLGCG 394

Query: 441 YFESMTHDLGIIPNQEHHA----CLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGV 496
               M H   I    EH A     LI + ++ G   +  +Q+ ++  + D+  WNA+   
Sbjct: 395 ---KMVHLWAIKTGFEHDALVMSSLISMYSKCGLISE-ASQVFELILQRDTVTWNAMIAT 450

Query: 497 CRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALG-KGRLVE 541
              HG  D   KV D +     +    H    SI SA   KG L E
Sbjct: 451 YAYHGLADEALKVFDMMTKAGFRPD--HATFLSILSACAHKGYLYE 494



 Score = 63.2 bits (152), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 50/169 (29%), Positives = 87/169 (51%), Gaps = 6/169 (3%)

Query: 13  KNLPNNCLIQSFLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGK 72
           +  PN   I S+ +LIS  +   A+S L  + + G++    TL+ ++  CA   SL  GK
Sbjct: 337 RRAPNKDAI-SWNTLISGYKDEGALSLLSEMIRGGLKPDQATLSVVISICASLVSLGCGK 395

Query: 73  RVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANL 132
            VHL    T  +     +S+ LISMY KCG   +A +VF+ I  ++  ++N M++ YA  
Sbjct: 396 MVHLWAIKTGFEHDALVMSS-LISMYSKCGLISEASQVFELILQRDTVTWNAMIATYAYH 454

Query: 133 GMMKHARNLFDNMAER----DVVSWNTMIIGYAKSGAVEEGLKFYKVLR 177
           G+   A  +FD M +     D  ++ +++   A  G + EG   ++ ++
Sbjct: 455 GLADEALKVFDMMTKAGFRPDHATFLSILSACAHKGYLYEGCYHFRSMQ 503


>gi|449442815|ref|XP_004139176.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g05340-like [Cucumis sativus]
          Length = 838

 Score =  335 bits (858), Expect = 5e-89,   Method: Compositional matrix adjust.
 Identities = 182/547 (33%), Positives = 303/547 (55%), Gaps = 45/547 (8%)

Query: 56  AFILQQCAESKSLKLGKRVHLHL----KLTQRKTPTTFLSNHLISMYFKCGSDVDARKVF 111
           +F+L  C    +L LG  +H  +    +L+        + N LISMY +CG   DA KVF
Sbjct: 49  SFLLSICGREGNLHLGSSLHASIIKSFELSNHYNGVVIM-NSLISMYDRCGKLPDAVKVF 107

Query: 112 DKIPVKNLFSYNNMLSG-------YANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSG 164
           D++  ++  S+N ++ G       Y   G +     +F  M ER+V++W  +I G A++G
Sbjct: 108 DEMITRDTISWNALIGGFVRNGNSYFKCGCVGLGMQVFYEMGERNVITWTAVISGLAQNG 167

Query: 165 AVEEGLKFYKVLRRF-SISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVIS 223
             E  LK +K +  + S+  N  ++  +LT C  LE LK   Q+HG ++  G  S++ I 
Sbjct: 168 YHEHSLKLFKEMMSYGSVEPNSLTYLSLLTACSGLEALKEGCQIHGLIMKLGIQSDLCIG 227

Query: 224 SSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPV 283
           S+++D Y+K G + +A              W                 K+F    E + V
Sbjct: 228 SALMDMYSKSGRIGEA--------------W-----------------KIFELAEELDMV 256

Query: 284 SWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFL 343
           S T ++AG+T NG  ++A+++F +M+ + I  + +  S  L    +  SL+ G+QVH F+
Sbjct: 257 SLTVILAGFTHNGCEEEAIQIFLKMLKMGIEIDGNVVSVVLGVFGADTSLRLGQQVHSFV 316

Query: 344 IRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQA 403
           ++ NF  N  V + LI+MYSKCG L++  +VFD    + NS+ WN+MI+A  +HG   +A
Sbjct: 317 VKKNFICNPFVSNGLINMYSKCGALDESMKVFDRMRER-NSVTWNSMIAAFARHGDALKA 375

Query: 404 IRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIE 463
           ++L+ DM     KP  +T   +L+AC+H+GLV++G+ + +SMT D G+ P  EHHAC+++
Sbjct: 376 LQLYEDMQLEGAKPTDVTFLSLLHACSHAGLVKKGMEFLKSMTKDHGMNPRSEHHACVVD 435

Query: 464 LLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSAT 523
           +L +AG   +  N +EK+P +    +W AL G C ++G+  +G+   + L  + P S   
Sbjct: 436 MLGRAGMLSEARNFIEKLPEQPGLLVWQALLGACSLYGDSKIGKYAAEHLFSETPDSPVP 495

Query: 524 HGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVL 583
           + LL++IYS+ G  +   +  + + E    KE  ISWIEI+ KVH+F+V D +HP  +++
Sbjct: 496 YVLLANIYSSEGNWKERARTIRKMKEVGTAKETGISWIEIDKKVHSFTVGDKMHPQTEMI 555

Query: 584 YSVLEQL 590
           Y VL +L
Sbjct: 556 YGVLWEL 562



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 65/275 (23%), Positives = 126/275 (45%), Gaps = 45/275 (16%)

Query: 31  GQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFL 90
           G   EAI     + + GI +    ++ +L       SL+LG++VH    + +      F+
Sbjct: 269 GCEEEAIQIFLKMLKMGIEIDGNVVSVVLGVFGADTSLRLGQQVH-SFVVKKNFICNPFV 327

Query: 91  SNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNM----A 146
           SN LI+MY KCG+  ++ KVFD++  +N  ++N+M++ +A  G    A  L+++M    A
Sbjct: 328 SNGLINMYSKCGALDESMKVFDRMRERNSVTWNSMIAAFARHGDALKALQLYEDMQLEGA 387

Query: 147 ERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQ 206
           +   V++ +++   + +G V++G++F K + +                    +     R 
Sbjct: 388 KPTDVTFLSLLHACSHAGLVKKGMEFLKSMTK--------------------DHGMNPRS 427

Query: 207 VHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDE-TDARDVLTWTTMVSGYAKLG 265
            H               + +VD   + G LS+AR   ++  +   +L W  ++   +  G
Sbjct: 428 EH--------------HACVVDMLGRAGMLSEARNFIEKLPEQPGLLVWQALLGACSLYG 473

Query: 266 DME----SASKLFNEMPEKNPVSWTTLIAGYTRNG 296
           D +    +A  LF+E P+ +PV +  L   Y+  G
Sbjct: 474 DSKIGKYAAEHLFSETPD-SPVPYVLLANIYSSEG 507


>gi|356558692|ref|XP_003547637.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g17630-like [Glycine max]
          Length = 696

 Score =  335 bits (858), Expect = 6e-89,   Method: Compositional matrix adjust.
 Identities = 178/565 (31%), Positives = 315/565 (55%), Gaps = 18/565 (3%)

Query: 54  TLAFILQQCAESKSLKLGKRVHLH-LKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFD 112
           TL  +++ C+   S  L + VH H L++  R      + N L+ MY K G   DAR++FD
Sbjct: 134 TLPLVIRACSSLGSSYLCRIVHCHALQMGFRNH--LHVVNELVGMYGKLGRMEDARQLFD 191

Query: 113 KIPVKNLFSYNNMLSGYA----NLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEE 168
            + V+++ S+N M+SGYA    +LG  +  + +     + + V+W +++  +A+ G  +E
Sbjct: 192 GMFVRSIVSWNTMVSGYALNRDSLGASRVFKRMELEGLQPNSVTWTSLLSSHARCGLYDE 251

Query: 169 GLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVD 228
            L+ +KV+R   I     + A +L++C  + E+   +++HG V+  G+   + + ++++ 
Sbjct: 252 TLELFKVMRTRGIEIGAEALAVVLSVCADMAEVDWGKEIHGYVVKGGYEDYLFVKNALIG 311

Query: 229 AYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEK-------- 280
            Y K   + DA ++F E   +++++W  ++S YA+ G  + A   F  M +         
Sbjct: 312 TYGKHQHMGDAHKVFLEIKNKNLVSWNALISSYAESGLCDEAYAAFLHMEKSDSDDHSLV 371

Query: 281 --NPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQ 338
             N +SW+ +I+G+   G G+K+LELF +M + ++  N  T SS L  CA + +L  G++
Sbjct: 372 RPNVISWSAVISGFAYKGRGEKSLELFRQMQLAKVMANCVTISSVLSVCAELAALNLGRE 431

Query: 339 VHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHG 398
           +HG+ IR     N +V + LI+MY KCG   +G  VFD  + ++  + WN++I     HG
Sbjct: 432 LHGYAIRNMMSDNILVGNGLINMYMKCGDFKEGHLVFDNIEGRD-LISWNSLIGGYGMHG 490

Query: 399 YDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHH 458
             E A+R F++M+R+ +KPD IT   IL+AC+H+GLV  G   F+ M  +  I PN EH+
Sbjct: 491 LGENALRTFNEMIRARMKPDNITFVAILSACSHAGLVAAGRNLFDQMVTEFRIEPNVEHY 550

Query: 459 ACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNP 518
           AC+++LL +AG   +  + +  MP E + Y+W AL   CR++ ++D+  +   Q++    
Sbjct: 551 ACMVDLLGRAGLLKEATDIVRNMPIEPNEYVWGALLNSCRMYKDMDIVEETASQILTLKS 610

Query: 519 QSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHP 578
           + + +  LLS+IY+A G+     +VR     +  KK    SWIE+  KV+ FS  + +H 
Sbjct: 611 KITGSFMLLSNIYAANGRWDDSARVRVSARTKGLKKIPGQSWIEVRKKVYTFSAGNLVHF 670

Query: 579 MRDVLYSVLEQLAGQMGEDAPSLDA 603
             + +Y +LE+L   M  +   LD+
Sbjct: 671 GLEDIYVILEELNLHMASENYKLDS 695



 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 96/334 (28%), Positives = 166/334 (49%), Gaps = 14/334 (4%)

Query: 125 MLSGYANLGMMKHARNLFDNM---AERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSI 181
           +++ YA    + HAR +FD +   +   ++ WN++I      G  +  L+ Y  +R+   
Sbjct: 69  LIAVYARFAFLSHARKVFDAIPLESLHHLLLWNSIIRANVSHGYHQHALELYVEMRKLGF 128

Query: 182 SCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARR 241
             + F+   ++  C  L    L R VH   L  GF +++ + + +V  Y K G + DAR+
Sbjct: 129 LPDGFTLPLVIRACSSLGSSYLCRIVHCHALQMGFRNHLHVVNELVGMYGKLGRMEDARQ 188

Query: 242 LFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMP----EKNPVSWTTLIAGYTRNGL 297
           LFD    R +++W TMVSGYA   D   AS++F  M     + N V+WT+L++ + R GL
Sbjct: 189 LFDGMFVRSIVSWNTMVSGYALNRDSLGASRVFKRMELEGLQPNSVTWTSLLSSHARCGL 248

Query: 298 GQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSS 357
             + LELF  M    I       +  L  CA +  +  GK++HG++++  +     V ++
Sbjct: 249 YDETLELFKVMRTRGIEIGAEALAVVLSVCADMAEVDWGKEIHGYVVKGGYEDYLFVKNA 308

Query: 358 LIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSS--- 414
           LI  Y K   + D  +VF    NK N + WN +IS+  + G  ++A   F  M +S    
Sbjct: 309 LIGTYGKHQHMGDAHKVFLEIKNK-NLVSWNALISSYAESGLCDEAYAAFLHMEKSDSDD 367

Query: 415 ---VKPDKITLAVILNACTHSGLVQEGLTYFESM 445
              V+P+ I+ + +++   + G  ++ L  F  M
Sbjct: 368 HSLVRPNVISWSAVISGFAYKGRGEKSLELFRQM 401



 Score = 98.6 bits (244), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 91/359 (25%), Positives = 157/359 (43%), Gaps = 43/359 (11%)

Query: 186 FSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDE 245
           +SF      C  L++    RQ+H Q+++T       +++ ++  YA+   LS AR++FD 
Sbjct: 32  YSFHAFFQRCFTLQQ---ARQLHSQLVLTTAHRLPFLAARLIAVYARFAFLSHARKVFDA 88

Query: 246 TDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELF 305
                                +ES   L         + W ++I     +G  Q ALEL+
Sbjct: 89  I-------------------PLESLHHL---------LLWNSIIRANVSHGYHQHALELY 120

Query: 306 TRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKC 365
             M  L   P+  T    + AC+S+ S    + VH   ++  FR++  V++ L+ MY K 
Sbjct: 121 VEMRKLGFLPDGFTLPLVIRACSSLGSSYLCRIVHCHALQMGFRNHLHVVNELVGMYGKL 180

Query: 366 GCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVI 425
           G + D RQ+FD    + + + WNTM+S    +     A R+F  M    ++P+ +T   +
Sbjct: 181 GRMEDARQLFDGMFVR-SIVSWNTMVSGYALNRDSLGASRVFKRMELEGLQPNSVTWTSL 239

Query: 426 LNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIEL---LAQAGCSDQLMNQLEKMP 482
           L++    GL  E L  F+ M    GI    E  A ++ +   +A+     ++   + K  
Sbjct: 240 LSSHARCGLYDETLELFKVM-RTRGIEIGAEALAVVLSVCADMAEVDWGKEIHGYVVKGG 298

Query: 483 YEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQN-------PQSSATHGLLSSIYSAL 534
           YE   ++ NAL G    H ++    KV  ++ ++N         S A  GL    Y+A 
Sbjct: 299 YEDYLFVKNALIGTYGKHQHMGDAHKVFLEIKNKNLVSWNALISSYAESGLCDEAYAAF 357


>gi|356530157|ref|XP_003533650.1| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
           mitochondrial-like [Glycine max]
          Length = 711

 Score =  335 bits (858), Expect = 6e-89,   Method: Compositional matrix adjust.
 Identities = 192/563 (34%), Positives = 298/563 (52%), Gaps = 62/563 (11%)

Query: 92  NHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVV 151
           N +++ YF+     +A  +F+K+P +N  S+N ++SG+   GM+  AR +FD M +R+VV
Sbjct: 59  NAMVAAYFEARQPREALLLFEKMPQRNTVSWNGLISGHIKNGMLSEARRVFDTMPDRNVV 118

Query: 152 SWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILT-----ICVKLEELKLTRQ 206
           SW +M+ GY ++G V E  + +  +   ++        G+L         KL ++   + 
Sbjct: 119 SWTSMVRGYVRNGDVAEAERLFWHMPHKNVVSWTVMLGGLLQEGRVDDARKLFDMMPEKD 178

Query: 207 VHGQVLVTGFLS---------------------NVVISSSIVDAYAKCGELSDARRLFDE 245
           V   V VT  +                      NVV  +++V  YA+ G++  AR+LF+ 
Sbjct: 179 V---VAVTNMIGGYCEEGRLDEARALFDEMPKRNVVTWTAMVSGYARNGKVDVARKLFEV 235

Query: 246 TDARDVLTWTTMVSGYAKLGDMESASKLFNEMP--------------------------- 278
              R+ ++WT M+ GY   G M  AS LF+ MP                           
Sbjct: 236 MPERNEVSWTAMLLGYTHSGRMREASSLFDAMPVKPVVVCNEMIMGFGLNGEVDKARRVF 295

Query: 279 ----EKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLK 334
               E++  +W+ +I  Y R G   +AL LF RM    +  N  +  S L  C S+ SL 
Sbjct: 296 KGMKERDNGTWSAMIKVYERKGYELEALGLFRRMQREGLALNFPSLISVLSVCVSLASLD 355

Query: 335 HGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISAL 394
           HGKQVH  L+R+ F  +  V S LI MY KCG L   +QVF+    K + ++WN+MI+  
Sbjct: 356 HGKQVHAQLVRSEFDQDLYVASVLITMYVKCGNLVRAKQVFNRFPLK-DVVMWNSMITGY 414

Query: 395 TQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPN 454
           +QHG  E+A+ +FHDM  S V PD +T   +L+AC++SG V+EGL  FE+M     + P 
Sbjct: 415 SQHGLGEEALNVFHDMCSSGVPPDDVTFIGVLSACSYSGKVKEGLELFETMKCKYQVEPG 474

Query: 455 QEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLI 514
            EH+ACL++LL +A   ++ M  +EKMP E D+ +W AL G CR H  +D+    V++L 
Sbjct: 475 IEHYACLVDLLGRADQVNEAMKLVEKMPMEPDAIVWGALLGACRTHMKLDLAEVAVEKLA 534

Query: 515 DQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSD 574
              P+++  + LLS++Y+  G+ R VE +R+ I  R   K    SWIE+E KVH F+  D
Sbjct: 535 QLEPKNAGPYVLLSNMYAYKGRWRDVEVLREKIKARSVTKLPGCSWIEVEKKVHMFTGGD 594

Query: 575 SL-HPMRDVLYSVLEQLAGQMGE 596
           S  HP + ++  +LE+L G + E
Sbjct: 595 SKGHPEQPIIMKMLEKLGGLLRE 617



 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 106/393 (26%), Positives = 176/393 (44%), Gaps = 81/393 (20%)

Query: 71  GKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFD------------------ 112
           G+ +     + Q +   T  S++ I+ Y + G    ARKVFD                  
Sbjct: 5   GRAILRRCMMLQVRLQCTTSSSYAIACYARNGQLDHARKVFDETPLPHRTVSSWNAMVAA 64

Query: 113 ---------------KIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMI 157
                          K+P +N  S+N ++SG+   GM+  AR +FD M +R+VVSW +M+
Sbjct: 65  YFEARQPREALLLFEKMPQRNTVSWNGLISGHIKNGMLSEARRVFDTMPDRNVVSWTSMV 124

Query: 158 IGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFL 217
            GY ++G V E  + +  +   ++        G+L      +  KL   +  +       
Sbjct: 125 RGYVRNGDVAEAERLFWHMPHKNVVSWTVMLGGLLQEGRVDDARKLFDMMPEK------- 177

Query: 218 SNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEM 277
            +VV  ++++  Y + G L +AR LFDE   R+V+TWT MVSGYA+ G ++ A KLF  M
Sbjct: 178 -DVVAVTNMIGGYCEEGRLDEARALFDEMPKRNVVTWTAMVSGYARNGKVDVARKLFEVM 236

Query: 278 PEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGK 337
           PE+N VSWT ++ GYT +G  ++A  LF  M    ++P                      
Sbjct: 237 PERNEVSWTAMLLGYTHSGRMREASSLFDAM---PVKP---------------------- 271

Query: 338 QVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQH 397
                          +V + +I  +   G ++  R+VF     ++N   W+ MI    + 
Sbjct: 272 --------------VVVCNEMIMGFGLNGEVDKARRVFKGMKERDNGT-WSAMIKVYERK 316

Query: 398 GYDEQAIRLFHDMVRSSVKPDKITLAVILNACT 430
           GY+ +A+ LF  M R  +  +  +L  +L+ C 
Sbjct: 317 GYELEALGLFRRMQREGLALNFPSLISVLSVCV 349



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 47/152 (30%), Positives = 86/152 (56%), Gaps = 5/152 (3%)

Query: 30  KGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTF 89
           KG   EA+     + + G+ L   +L  +L  C    SL  GK+VH  L  ++      +
Sbjct: 316 KGYELEALGLFRRMQREGLALNFPSLISVLSVCVSLASLDHGKQVHAQLVRSEFDQ-DLY 374

Query: 90  LSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERD 149
           +++ LI+MY KCG+ V A++VF++ P+K++  +N+M++GY+  G+ + A N+F +M    
Sbjct: 375 VASVLITMYVKCGNLVRAKQVFNRFPLKDVVMWNSMITGYSQHGLGEEALNVFHDMCSSG 434

Query: 150 VVSWNTMIIGY----AKSGAVEEGLKFYKVLR 177
           V   +   IG     + SG V+EGL+ ++ ++
Sbjct: 435 VPPDDVTFIGVLSACSYSGKVKEGLELFETMK 466


>gi|357167109|ref|XP_003581008.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Brachypodium distachyon]
          Length = 921

 Score =  335 bits (858), Expect = 6e-89,   Method: Compositional matrix adjust.
 Identities = 169/512 (33%), Positives = 282/512 (55%), Gaps = 3/512 (0%)

Query: 67  SLKLGKRVHLHLKLTQRKTPTTFLS-NHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNM 125
           +L  G R+   + +  R    +  S   L++   +CG   +AR +F++IP   + S+N M
Sbjct: 299 ALSHGGRIDAAIAVYGRDPVKSIPSQTALLTGLARCGRITEARILFEQIPDPIVVSWNAM 358

Query: 126 LSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNE 185
           ++GY   GM+  A+ LFD M  R+ +SW  MI GYA++G  EE L   + L R  +  + 
Sbjct: 359 ITGYMQNGMVDEAKELFDRMPFRNTISWAGMIAGYAQNGRSEEALDLLQALHRNGMLPSL 418

Query: 186 FSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDE 245
            S       C  +  L+  RQVH   +  G   N  + ++++  Y KC  +   R++F+ 
Sbjct: 419 SSLTSSFLACSHIGALETGRQVHSLAVKAGCQFNSYVCNALISMYGKCRNMEYVRQVFNR 478

Query: 246 TDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELF 305
              +D ++W + ++   +   +E A  +F+ M  ++ VSWTT+I+ Y +   G +A+E F
Sbjct: 479 MRVKDTVSWNSFIAALVQNNMLEDARHIFDNMLSRDVVSWTTIISAYAQAERGDEAVEFF 538

Query: 306 TRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKC 365
             M+    +PN    +  L  C  + S K G+Q+H   I+    S  IV ++L+ MY KC
Sbjct: 539 KTMLHEHEKPNSPILTILLSVCGGLGSAKLGQQIHTVAIKHGMDSELIVANALMSMYFKC 598

Query: 366 GCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVI 425
           GC  D  +VFD  + ++    WNT I+   QHG   +AI+++  M    V P+++T   +
Sbjct: 599 GCA-DSHKVFDSMEERD-IFTWNTFITGCAQHGLGREAIKMYEHMESVGVLPNEVTFVGL 656

Query: 426 LNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEH 485
           LNAC+H+GLV EG  +F+SM+ D G+ P  EH+AC+++LL + G        +  MP E 
Sbjct: 657 LNACSHAGLVDEGWQFFKSMSRDYGLTPLLEHYACMVDLLGRTGDVQGAEKFIYDMPIEP 716

Query: 486 DSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQ 545
           D+ +W+AL G C+IH N ++GR+  ++L    P ++  + +LS+IYS+LG    V ++R+
Sbjct: 717 DTVIWSALLGACKIHKNAEIGRRAAEKLFTTEPSNAGNYVMLSNIYSSLGMWVEVAELRK 776

Query: 546 LINERQFKKEQAISWIEIENKVHAFSVSDSLH 577
           ++ +R   KE   SW++I NKVH+F   D  H
Sbjct: 777 IMKQRGVSKEPGCSWMQIRNKVHSFVTGDKQH 808



 Score =  177 bits (448), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 138/523 (26%), Positives = 231/523 (44%), Gaps = 113/523 (21%)

Query: 88  TFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAE 147
           T   N ++S Y + G    AR++FD +P +++ S+N+M++GY +   M  A NLF  M +
Sbjct: 126 TVAWNAMVSCYVQNGDITMARRLFDAMPSRDVTSWNSMVTGYCHSRQMVDAWNLFKQMPQ 185

Query: 148 RDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQV 207
           R++V+W  MI GY +     +G   ++++     S ++ +FA +L+    L++L +   +
Sbjct: 186 RNLVTWTVMISGYVRIEQHGKGWDIFRMMHHEGASPDQSNFASVLSAVTGLQDLGVLEVL 245

Query: 208 HGQVLVTGFLSNVVISSSIVDAYAK-CGELSDARRLFDETDARDVLTWTTMV-------- 258
              VL TGF S+VVI +SI++ Y +    L  A + FD    R+  TW+TM+        
Sbjct: 246 RPLVLKTGFESDVVIGTSILNVYTRDASALDIAIKFFDGMVERNEYTWSTMIAALSHGGR 305

Query: 259 -----------------------SGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRN 295
                                  +G A+ G +  A  LF ++P+   VSW  +I GY +N
Sbjct: 306 IDAAIAVYGRDPVKSIPSQTALLTGLARCGRITEARILFEQIPDPIVVSWNAMITGYMQN 365

Query: 296 GLGQKALELFTRM----------MILRIRPNQHTFSSC---------------------L 324
           G+  +A ELF RM          MI     N  +  +                       
Sbjct: 366 GMVDEAKELFDRMPFRNTISWAGMIAGYAQNGRSEEALDLLQALHRNGMLPSLSSLTSSF 425

Query: 325 CACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNK--- 381
            AC+ I +L+ G+QVH   ++   + N+ V ++LI MY KC  +   RQVF+    K   
Sbjct: 426 LACSHIGALETGRQVHSLAVKAGCQFNSYVCNALISMYGKCRNMEYVRQVFNRMRVKDTV 485

Query: 382 ----------ENSML-----------------WNTMISALTQHGYDEQAIRLFHDMVRSS 414
                     +N+ML                 W T+ISA  Q    ++A+  F  M+   
Sbjct: 486 SWNSFIAALVQNNMLEDARHIFDNMLSRDVVSWTTIISAYAQAERGDEAVEFFKTMLHEH 545

Query: 415 VKPDKITLAVILNACTHSGLVQEG-----LTYFESMTHDLGIIPNQEHHACLIELLAQAG 469
            KP+   L ++L+ C   G  + G     +     M  +L I+ N      L+ +  + G
Sbjct: 546 EKPNSPILTILLSVCGGLGSAKLGQQIHTVAIKHGMDSEL-IVAN-----ALMSMYFKCG 599

Query: 470 CSD--QLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVV 510
           C+D  ++ + +E    E D + WN     C  HG   +GR+ +
Sbjct: 600 CADSHKVFDSME----ERDIFTWNTFITGCAQHG---LGREAI 635



 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 124/468 (26%), Positives = 213/468 (45%), Gaps = 61/468 (13%)

Query: 130 ANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFA 189
           A LG ++ AR +FD M  RD+++WN+MI  Y  SG +E+    +  +   ++       +
Sbjct: 44  ARLGRLREAREVFDAMPHRDIIAWNSMISAYCNSGMLEDARILFDAISGGNVRTATILLS 103

Query: 190 GILTICVKLEELKLTRQVHGQVLVTGFLS-NVVISSSIVDAYAKCGELSDARRLFDETDA 248
           G           +L R +  + +  G    N V  +++V  Y + G+++ ARRLFD   +
Sbjct: 104 GYA---------RLGRVLDARRVFDGMPERNTVAWNAMVSCYVQNGDITMARRLFDAMPS 154

Query: 249 RDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRM 308
           RDV +W +MV+GY     M  A  LF +MP++N V+WT +I+GY R     K  ++F  M
Sbjct: 155 RDVTSWNSMVTGYCHSRQMVDAWNLFKQMPQRNLVTWTVMISGYVRIEQHGKGWDIFRMM 214

Query: 309 MILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSK-CGC 367
                 P+Q  F+S L A   +  L   + +   +++T F S+ ++ +S++++Y++    
Sbjct: 215 HHEGASPDQSNFASVLSAVTGLQDLGVLEVLRPLVLKTGFESDVVIGTSILNVYTRDASA 274

Query: 368 LNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLF-HDMVRSSVKPDKITLAVIL 426
           L+   + FD    + N   W+TMI+AL+  G  + AI ++  D V+S   P +  L   L
Sbjct: 275 LDIAIKFFDGMVER-NEYTWSTMIAALSHGGRIDAAIAVYGRDPVKSI--PSQTALLTGL 331

Query: 427 NACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPY--- 483
             C   G + E    FE +   + +  N      +I    Q G  D+     ++MP+   
Sbjct: 332 ARC---GRITEARILFEQIPDPIVVSWN-----AMITGYMQNGMVDEAKELFDRMPFRNT 383

Query: 484 ----------------EHDSYLWNALH---------------GVCRIHGNIDMGRKVVDQ 512
                           E    L  ALH                 C   G ++ GR+V   
Sbjct: 384 ISWAGMIAGYAQNGRSEEALDLLQALHRNGMLPSLSSLTSSFLACSHIGALETGRQVHSL 443

Query: 513 LIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISW 560
            +    Q ++   + +++ S  GK R +E VRQ+ N  + K    +SW
Sbjct: 444 AVKAGCQFNSY--VCNALISMYGKCRNMEYVRQVFNRMRVK--DTVSW 487



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 100/399 (25%), Positives = 187/399 (46%), Gaps = 67/399 (16%)

Query: 31  GQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFL 90
           G+  EA+  L  L + G+     +L      C+   +L+ G++VH  L +       +++
Sbjct: 397 GRSEEALDLLQALHRNGMLPSLSSLTSSFLACSHIGALETGRQVH-SLAVKAGCQFNSYV 455

Query: 91  SNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDV 150
            N LISMY KC +    R+VF+++ VK+  S+N+ ++      M++ AR++FDNM  RDV
Sbjct: 456 CNALISMYGKCRNMEYVRQVFNRMRVKDTVSWNSFIAALVQNNMLEDARHIFDNMLSRDV 515

Query: 151 VSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQ 210
           VSW T+I  YA++   +E ++F+K +       N      +L++C  L   KL +Q+H  
Sbjct: 516 VSWTTIISAYAQAERGDEAVEFFKTMLHEHEKPNSPILTILLSVCGGLGSAKLGQQIHTV 575

Query: 211 VLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESA 270
            +  G  S ++++++++  Y KCG  +D+ ++FD  + RD+ TW T ++G A+       
Sbjct: 576 AIKHGMDSELIVANALMSMYFKCG-CADSHKVFDSMEERDIFTWNTFITGCAQ------- 627

Query: 271 SKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASI 330
                                   +GLG++A++++  M  + + PN+ TF   L AC+  
Sbjct: 628 ------------------------HGLGREAIKMYEHMESVGVLPNEVTFVGLLNACSHA 663

Query: 331 VSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTM 390
             +  G Q    +      S    ++ L++ Y+                          M
Sbjct: 664 GLVDEGWQFFKSM------SRDYGLTPLLEHYA-------------------------CM 692

Query: 391 ISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNAC 429
           +  L + G  + A +  +DM    ++PD +  + +L AC
Sbjct: 693 VDLLGRTGDVQGAEKFIYDM---PIEPDTVIWSALLGAC 728


>gi|15223099|ref|NP_172286.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75174869|sp|Q9LN01.1|PPR21_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g08070
 gi|8778839|gb|AAF79838.1|AC026875_18 T6D22.15 [Arabidopsis thaliana]
 gi|332190118|gb|AEE28239.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 741

 Score =  334 bits (857), Expect = 6e-89,   Method: Compositional matrix adjust.
 Identities = 190/562 (33%), Positives = 310/562 (55%), Gaps = 38/562 (6%)

Query: 34  SEAISSLDL---LAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFL 90
           S+ +S+L L   +   G+   + T  F+L+ CA+SK+ K G+++H H+ L        ++
Sbjct: 113 SDPVSALKLYVCMISLGLLPNSYTFPFVLKSCAKSKAFKEGQQIHGHV-LKLGCDLDLYV 171

Query: 91  SNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDV 150
              LISMY + G   DA KVFDK P +++ SY  ++ GYA+ G +++A+ LFD +  +DV
Sbjct: 172 HTSLISMYVQNGRLEDAHKVFDKSPHRDVVSYTALIKGYASRGYIENAQKLFDEIPVKDV 231

Query: 151 VSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQ 210
           VSWN MI GYA++G  +E L+ +K + + ++  +E +   +++ C +   ++L RQVH  
Sbjct: 232 VSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVVSACAQSGSIELGRQVHLW 291

Query: 211 VLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESA 270
           +   GF SN+ I ++++D Y+KCGEL                               E+A
Sbjct: 292 IDDHGFGSNLKIVNALIDLYSKCGEL-------------------------------ETA 320

Query: 271 SKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASI 330
             LF  +P K+ +SW TLI GYT   L ++AL LF  M+     PN  T  S L ACA +
Sbjct: 321 CGLFERLPYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHL 380

Query: 331 VSLKHGKQVHGFLIR--TNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWN 388
            ++  G+ +H ++ +      + + + +SLIDMY+KCG +    QVF+   +K  S  WN
Sbjct: 381 GAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSS-WN 439

Query: 389 TMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHD 448
            MI     HG  + +  LF  M +  ++PD IT   +L+AC+HSG++  G   F +MT D
Sbjct: 440 AMIFGFAMHGRADASFDLFSRMRKIGIQPDDITFVGLLSACSHSGMLDLGRHIFRTMTQD 499

Query: 449 LGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRK 508
             + P  EH+ C+I+LL  +G   +    +  M  E D  +W +L   C++HGN+++G  
Sbjct: 500 YKMTPKLEHYGCMIDLLGHSGLFKEAEEMINMMEMEPDGVIWCSLLKACKMHGNVELGES 559

Query: 509 VVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVH 568
             + LI   P++  ++ LLS+IY++ G+   V K R L+N++  KK    S IEI++ VH
Sbjct: 560 FAENLIKIEPENPGSYVLLSNIYASAGRWNEVAKTRALLNDKGMKKVPGCSSIEIDSVVH 619

Query: 569 AFSVSDSLHPMRDVLYSVLEQL 590
            F + D  HP    +Y +LE++
Sbjct: 620 EFIIGDKFHPRNREIYGMLEEM 641



 Score =  214 bits (545), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 130/402 (32%), Positives = 215/402 (53%), Gaps = 13/402 (3%)

Query: 135 MKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTI 194
           + +A ++F  + E +++ WNTM  G+A S      LK Y  +    +  N ++F  +L  
Sbjct: 84  LPYAISVFKTIQEPNLLIWNTMFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFVLKS 143

Query: 195 CVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTW 254
           C K +  K  +Q+HG VL  G   ++ + +S++  Y + G L DA ++FD++  RDV+++
Sbjct: 144 CAKSKAFKEGQQIHGHVLKLGCDLDLYVHTSLISMYVQNGRLEDAHKVFDKSPHRDVVSY 203

Query: 255 TTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIR 314
           T ++ GYA  G +E+A KLF+E+P K+ VSW  +I+GY   G  ++ALELF  MM   +R
Sbjct: 204 TALIKGYASRGYIENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVR 263

Query: 315 PNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQV 374
           P++ T  + + ACA   S++ G+QVH ++    F SN  ++++LID+YSKCG L     +
Sbjct: 264 PDESTMVTVVSACAQSGSIELGRQVHLWIDDHGFGSNLKIVNALIDLYSKCGELETACGL 323

Query: 375 FDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGL 434
           F+    K+  + WNT+I   T     ++A+ LF +M+RS   P+ +T+  IL AC H G 
Sbjct: 324 FERLPYKD-VISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGA 382

Query: 435 VQEGLTYFESMTHDL-GIIPNQEHHACLIELLAQAG---CSDQLMNQLEKMPYEHDSY-L 489
           +  G      +   L G+         LI++ A+ G    + Q+ N +      H S   
Sbjct: 383 IDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSI-----LHKSLSS 437

Query: 490 WNALHGVCRIHGNIDMGRKVVDQL--IDQNPQSSATHGLLSS 529
           WNA+     +HG  D    +  ++  I   P      GLLS+
Sbjct: 438 WNAMIFGFAMHGRADASFDLFSRMRKIGIQPDDITFVGLLSA 479



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 86/402 (21%), Positives = 170/402 (42%), Gaps = 72/402 (17%)

Query: 31  GQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFL 90
           G   EA+     + +  +R    T+  ++  CA+S S++LG++VHL +           +
Sbjct: 245 GNYKEALELFKDMMKTNVRPDESTMVTVVSACAQSGSIELGRQVHLWID-DHGFGSNLKI 303

Query: 91  SNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDV 150
            N LI +Y KCG    A  +F+++P K++ S+N ++ GY ++ + K A  LF  M     
Sbjct: 304 VNALIDLYSKCGELETACGLFERLPYKDVISWNTLIGGYTHMNLYKEALLLFQEM----- 358

Query: 151 VSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQ 210
                      +SG                   N+ +   IL  C  L  + + R +H  
Sbjct: 359 ----------LRSGETP----------------NDVTMLSILPACAHLGAIDIGRWIHVY 392

Query: 211 V--LVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDME 268
           +   + G  +   + +S++D YAKCG++  A ++F+    + + +W  M+ G+A      
Sbjct: 393 IDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIFGFA------ 446

Query: 269 SASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACA 328
                                     +G    + +LF+RM  + I+P+  TF   L AC+
Sbjct: 447 -------------------------MHGRADASFDLFSRMRKIGIQPDDITFVGLLSACS 481

Query: 329 SIVSLKHGKQVHGFLIRTNFRSNTIVM---SSLIDMYSKCGCLNDGRQVFDLTDNKENSM 385
               L  G+  H F   T     T  +     +ID+    G   +  ++ ++ + + + +
Sbjct: 482 HSGMLDLGR--HIFRTMTQDYKMTPKLEHYGCMIDLLGHSGLFKEAEEMINMMEMEPDGV 539

Query: 386 LWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILN 427
           +W +++ A   HG  E       ++++  ++P+     V+L+
Sbjct: 540 IWCSLLKACKMHGNVELGESFAENLIK--IEPENPGSYVLLS 579


>gi|347954520|gb|AEP33760.1| organelle transcript processing 82, partial [Capsella
           bursa-pastoris]
          Length = 706

 Score =  334 bits (856), Expect = 9e-89,   Method: Compositional matrix adjust.
 Identities = 188/556 (33%), Positives = 303/556 (54%), Gaps = 38/556 (6%)

Query: 34  SEAISSLDL---LAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFL 90
           S+ +S+L L   +   G+   + T  F+L+ CA+SK+ + G+++H H+ L        ++
Sbjct: 82  SDPVSALYLYVCMISLGLVPNSYTFPFLLKACAKSKAFREGQQIHGHV-LKLGCDLDLYV 140

Query: 91  SNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDV 150
              LI+MY K G   DARKVFD+   +++ SY  ++ GYA+ G +  A+ +FD +  +DV
Sbjct: 141 HTSLIAMYVKNGRXEDARKVFDQSSHRDVVSYTALIKGYASNGYIXSAQKMFDEIPVKDV 200

Query: 151 VSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQ 210
           VSWN +I GYA++G  +E L+ +K + + ++  +E +   +L+ C +   ++L RQVH  
Sbjct: 201 VSWNALISGYAETGNYKEALELFKEMMKTNVKPDESTMVTVLSACAQSASIELGRQVHSW 260

Query: 211 VLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESA 270
           +   GF SN+ I ++++D Y KCGE+                               E+A
Sbjct: 261 IDDHGFGSNLKIVNALIDLYIKCGEV-------------------------------ETA 289

Query: 271 SKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASI 330
           S LF  +  K+ +SW TLI GYT   L ++AL LF  M+     PN+ T  S L ACA +
Sbjct: 290 SGLFEGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNEVTMLSILPACAHL 349

Query: 331 VSLKHGKQVHGFLIR--TNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWN 388
            ++  G+ +H ++ +      + + + +SLIDMY+KCG +   +QVFD   N+  S  WN
Sbjct: 350 GAIDIGRWIHVYIDKRLKGVSNPSSLRTSLIDMYAKCGDIEAAQQVFDSMLNRSLSS-WN 408

Query: 389 TMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHD 448
            MI     HG    A  +F  M +  ++PD IT   +L+AC+HSG++  G   F SMT D
Sbjct: 409 AMIFGFAMHGRANPAFDIFSRMRKDGIEPDDITFVGLLSACSHSGMLDLGRHIFRSMTED 468

Query: 449 LGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRK 508
             I P  EH+ C+I+LL  +G   +    +  M  + D  +W +L   C++HGN+++G  
Sbjct: 469 YKITPKLEHYGCMIDLLGHSGLFKEAEEMINSMEMDPDGVIWCSLLKACKMHGNVELGES 528

Query: 509 VVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVH 568
               LI   P++S ++ LLS+IY+  G+   V K R L+N++  KK    S IEI++ VH
Sbjct: 529 FAQNLIKIEPKNSGSYVLLSNIYATAGRWNEVAKRRALLNDKGMKKVPGCSSIEIDSVVH 588

Query: 569 AFSVSDSLHPMRDVLY 584
            F + D LHP    +Y
Sbjct: 589 EFIIGDKLHPRNREIY 604



 Score =  212 bits (540), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 106/304 (34%), Positives = 179/304 (58%), Gaps = 1/304 (0%)

Query: 135 MKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTI 194
           + +A ++FD++ E +++ WNTM  G+A S      L  Y  +    +  N ++F  +L  
Sbjct: 53  LTYAISVFDSIQEPNLLIWNTMFRGHALSSDPVSALYLYVCMISLGLVPNSYTFPFLLKA 112

Query: 195 CVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTW 254
           C K +  +  +Q+HG VL  G   ++ + +S++  Y K G   DAR++FD++  RDV+++
Sbjct: 113 CAKSKAFREGQQIHGHVLKLGCDLDLYVHTSLIAMYVKNGRXEDARKVFDQSSHRDVVSY 172

Query: 255 TTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIR 314
           T ++ GYA  G + SA K+F+E+P K+ VSW  LI+GY   G  ++ALELF  MM   ++
Sbjct: 173 TALIKGYASNGYIXSAQKMFDEIPVKDVVSWNALISGYAETGNYKEALELFKEMMKTNVK 232

Query: 315 PNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQV 374
           P++ T  + L ACA   S++ G+QVH ++    F SN  ++++LID+Y KCG +     +
Sbjct: 233 PDESTMVTVLSACAQSASIELGRQVHSWIDDHGFGSNLKIVNALIDLYIKCGEVETASGL 292

Query: 375 FDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGL 434
           F+    K+  + WNT+I   T     ++A+ LF +M+RS   P+++T+  IL AC H G 
Sbjct: 293 FEGLSYKD-VISWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNEVTMLSILPACAHLGA 351

Query: 435 VQEG 438
           +  G
Sbjct: 352 IDIG 355



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 90/406 (22%), Positives = 162/406 (39%), Gaps = 85/406 (20%)

Query: 18  NCLIQSFLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLH 77
           N LI  +      G   EA+     + +  ++    T+  +L  CA+S S++LG++VH  
Sbjct: 204 NALISGY---AETGNYKEALELFKEMMKTNVKPDESTMVTVLSACAQSASIELGRQVHSW 260

Query: 78  LKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKH 137
           +           + N LI +Y KCG    A  +F+ +  K++ S+N ++ GY ++ + K 
Sbjct: 261 ID-DHGFGSNLKIVNALIDLYIKCGEVETASGLFEGLSYKDVISWNTLIGGYTHMNLYKE 319

Query: 138 ARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVK 197
           A  LF  M                +SG                 S NE +   IL  C  
Sbjct: 320 ALLLFQEM---------------LRSGE----------------SPNEVTMLSILPACAH 348

Query: 198 LEELKLTRQVHGQV--LVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWT 255
           L  + + R +H  +   + G  +   + +S++D YAKCG++  A+++FD    R + +W 
Sbjct: 349 LGAIDIGRWIHVYIDKRLKGVSNPSSLRTSLIDMYAKCGDIEAAQQVFDSMLNRSLSSWN 408

Query: 256 TMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRP 315
            M+ G+A  G               NP                  A ++F+RM    I P
Sbjct: 409 AMIFGFAMHG-------------RANP------------------AFDIFSRMRKDGIEP 437

Query: 316 NQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIV---------MSSLIDMYSKCG 366
           +  TF   L AC+    L  G+ +        FRS T              +ID+    G
Sbjct: 438 DDITFVGLLSACSHSGMLDLGRHI--------FRSMTEDYKITPKLEHYGCMIDLLGHSG 489

Query: 367 CLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVR 412
              +  ++ +  +   + ++W +++ A   HG  E       ++++
Sbjct: 490 LFKEAEEMINSMEMDPDGVIWCSLLKACKMHGNVELGESFAQNLIK 535


>gi|357436395|ref|XP_003588473.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355477521|gb|AES58724.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 827

 Score =  333 bits (855), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 180/565 (31%), Positives = 304/565 (53%), Gaps = 14/565 (2%)

Query: 37  ISSLDLLAQ---RGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNH 93
           + S++L A+    G+   A TLA +L  C+  K L +GK +H ++ +        F++N 
Sbjct: 252 VESVELFARMVGAGVAPDARTLASVLPACSRMKWLFVGKELHGYI-VRHELFSNGFVANA 310

Query: 94  LISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNM----AERD 149
           L+ MY +CG    A K+F K   K   SYN M+ GY   G +  A+ LF  M     ERD
Sbjct: 311 LVGMYRRCGDMKSAFKIFSKFARKCAASYNTMIVGYLENGNVGKAKELFYQMEQEGVERD 370

Query: 150 VVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHG 209
            +SWN MI G+  +   ++ L  ++ L    I  + F+   ILT    +  ++  +++H 
Sbjct: 371 RISWNCMISGHVDNFMFDDALMLFRDLLMEGIEPDSFTLGSILTGFADMTCIRQGKEIHS 430

Query: 210 QVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMES 269
             +V G  SN  +  ++V+ Y KC ++  A+  FDE   RD  TW  ++SGYA+   +  
Sbjct: 431 IAIVKGLQSNSFVGGALVEMYCKCNDIIAAQMAFDEISERDTSTWNALISGYARCNQIGK 490

Query: 270 ASKLFNEMP----EKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLC 325
             +L   M     E N  +W +++AG   N     A++LF  M +  +RP+ +T    L 
Sbjct: 491 IRELVERMKSDGFEPNVYTWNSILAGLVENKQYDLAMQLFNEMQVSSLRPDIYTVGIILA 550

Query: 326 ACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSM 385
           AC+ + ++  GKQVH + IR  + S+  + ++L+DMY+KCG +    QV++   N  N +
Sbjct: 551 ACSKLATIHRGKQVHAYSIRAGYDSDAHIGATLVDMYAKCGSIKHCYQVYNKISNP-NLV 609

Query: 386 LWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESM 445
             N M++A   HG+ E+ I +F  M+ S V+PD +T   +L++C H+G ++ G   F  M
Sbjct: 610 CHNAMLTAYAMHGHGEEGIVIFRRMLDSRVRPDHVTFLSVLSSCVHAGSIKIGYECFYLM 669

Query: 446 THDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDM 505
                I P  +H+ C+++LL++AG  D+    ++ MP E DS  W+AL G C IH  + +
Sbjct: 670 -ETYNITPTLKHYTCMVDLLSRAGKLDEAYQLIKNMPMEADSVTWSALLGGCFIHKEVAL 728

Query: 506 GRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIEN 565
           G    ++LI+  P ++  + LL+++Y++ G+   + K R+L+N++  +K    SWIE  +
Sbjct: 729 GEIAAEKLIELEPSNTGNYVLLANLYASAGRWHDLAKTRELMNDKGMQKSPGCSWIEDRD 788

Query: 566 KVHAFSVSDSLHPMRDVLYSVLEQL 590
            VH F  SD  H   + +Y +L+ L
Sbjct: 789 GVHIFLASDKSHQRVEEIYFMLDNL 813



 Score =  184 bits (468), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 146/544 (26%), Positives = 246/544 (45%), Gaps = 83/544 (15%)

Query: 50  LPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARK 109
           L + T + ILQ    S SL LGK++H H  +        F+   L+ MY    S  DA  
Sbjct: 32  LTSTTYSTILQS---SNSLTLGKQLHSH-SIKTGFYNHNFVQTKLLQMYSINSSFEDAWH 87

Query: 110 VFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEG 169
           +FDK+ +KNL S+  +L  + N+G+      LF+                      + E 
Sbjct: 88  MFDKMTLKNLHSWTAVLRLHLNMGLFYKGFMLFEEFL----------------CDGLGEK 131

Query: 170 LKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDA 229
           L F             F F  +L IC  L +L+L RQVHG VL  GF++NV + ++++D 
Sbjct: 132 LDF-------------FVFPVVLNICCGLGDLELGRQVHGMVLKHGFVTNVYVGNALIDM 178

Query: 230 YAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMP----EKNPVSW 285
           Y KCG L +A+++ +    +D ++W ++++     G +  A  L   M     E N V+W
Sbjct: 179 YGKCGSLDEAKKVLEGMTQKDCVSWNSIITACVANGVVYEALDLLENMLLSELEPNVVTW 238

Query: 286 TTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIR 345
           + +I G++ N    +++ELF RM+   + P+  T +S L AC+ +  L  GK++HG+++R
Sbjct: 239 SAVIGGFSSNAYDVESVELFARMVGAGVAPDARTLASVLPACSRMKWLFVGKELHGYIVR 298

Query: 346 TNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNK----ENSML--------------- 386
               SN  V ++L+ MY +CG +    ++F     K     N+M+               
Sbjct: 299 HELFSNGFVANALVGMYRRCGDMKSAFKIFSKFARKCAASYNTMIVGYLENGNVGKAKEL 358

Query: 387 ---------------WNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTH 431
                          WN MIS    +   + A+ LF D++   ++PD  TL  IL     
Sbjct: 359 FYQMEQEGVERDRISWNCMISGHVDNFMFDDALMLFRDLLMEGIEPDSFTLGSILTGFAD 418

Query: 432 SGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLE-KMPYEHDSYLW 490
              +++G     S+    G+  N      L+E+  +  C+D +  Q+      E D+  W
Sbjct: 419 MTCIRQG-KEIHSIAIVKGLQSNSFVGGALVEMYCK--CNDIIAAQMAFDEISERDTSTW 475

Query: 491 NAL---HGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLI 547
           NAL   +  C   G I   R++V+++     + +      +SI + L + +  +   QL 
Sbjct: 476 NALISGYARCNQIGKI---RELVERMKSDGFEPNVY--TWNSILAGLVENKQYDLAMQLF 530

Query: 548 NERQ 551
           NE Q
Sbjct: 531 NEMQ 534



 Score =  183 bits (465), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 108/434 (24%), Positives = 217/434 (50%), Gaps = 43/434 (9%)

Query: 47  GIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVD 106
           G +L       +L  C     L+LG++VH  + L        ++ N LI MY KCGS  +
Sbjct: 129 GEKLDFFVFPVVLNICCGLGDLELGRQVH-GMVLKHGFVTNVYVGNALIDMYGKCGSLDE 187

Query: 107 ARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNM----AERDVVSWNTMIIGYAK 162
           A+KV + +  K+  S+N++++     G++  A +L +NM     E +VV+W+ +I G++ 
Sbjct: 188 AKKVLEGMTQKDCVSWNSIITACVANGVVYEALDLLENMLLSELEPNVVTWSAVIGGFSS 247

Query: 163 SGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVI 222
           +    E ++ +  +    ++ +  + A +L  C +++ L + +++HG ++     SN  +
Sbjct: 248 NAYDVESVELFARMVGAGVAPDARTLASVLPACSRMKWLFVGKELHGYIVRHELFSNGFV 307

Query: 223 SSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMP---- 278
           ++++V  Y +CG++  A ++F +   +   ++ TM+ GY + G++  A +LF +M     
Sbjct: 308 ANALVGMYRRCGDMKSAFKIFSKFARKCAASYNTMIVGYLENGNVGKAKELFYQMEQEGV 367

Query: 279 EKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQ 338
           E++ +SW  +I+G+  N +   AL LF  +++  I P+  T  S L   A +  ++ GK+
Sbjct: 368 ERDRISWNCMISGHVDNFMFDDALMLFRDLLMEGIEPDSFTLGSILTGFADMTCIRQGKE 427

Query: 339 VHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKE---------------- 382
           +H   I    +SN+ V  +L++MY KC  +   +  FD    ++                
Sbjct: 428 IHSIAIVKGLQSNSFVGGALVEMYCKCNDIIAAQMAFDEISERDTSTWNALISGYARCNQ 487

Query: 383 ------------------NSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAV 424
                             N   WN++++ L ++   + A++LF++M  SS++PD  T+ +
Sbjct: 488 IGKIRELVERMKSDGFEPNVYTWNSILAGLVENKQYDLAMQLFNEMQVSSLRPDIYTVGI 547

Query: 425 ILNACTHSGLVQEG 438
           IL AC+    +  G
Sbjct: 548 ILAACSKLATIHRG 561



 Score =  111 bits (278), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 96/409 (23%), Positives = 184/409 (44%), Gaps = 43/409 (10%)

Query: 193 TICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVL 252
           TI      L L +Q+H   + TGF ++  + + ++  Y+      DA  +FD+   +++ 
Sbjct: 39  TILQSSNSLTLGKQLHSHSIKTGFYNHNFVQTKLLQMYSINSSFEDAWHMFDKMTLKNLH 98

Query: 253 TWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILR 312
           +WT ++  +  +G       LF E               +  +GLG+K L+ F   ++L 
Sbjct: 99  SWTAVLRLHLNMGLFYKGFMLFEE---------------FLCDGLGEK-LDFFVFPVVLN 142

Query: 313 IRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGR 372
           I             C  +  L+ G+QVHG +++  F +N  V ++LIDMY KCG L++ +
Sbjct: 143 I-------------CCGLGDLELGRQVHGMVLKHGFVTNVYVGNALIDMYGKCGSLDEAK 189

Query: 373 QVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHS 432
           +V +    K+  + WN++I+A   +G   +A+ L  +M+ S ++P+ +T + ++   + +
Sbjct: 190 KVLEGMTQKD-CVSWNSIITACVANGVVYEALDLLENMLLSELEPNVVTWSAVIGGFSSN 248

Query: 433 GLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAG---CSDQLMNQLEKMPYEHDSYL 489
               E +  F  M    G+ P+    A ++   ++        +L   + +     + ++
Sbjct: 249 AYDVESVELFARMV-GAGVAPDARTLASVLPACSRMKWLFVGKELHGYIVRHELFSNGFV 307

Query: 490 WNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLIN- 548
            NAL G+ R  G++    K+  +   +   S  T      I   L  G  V K ++L   
Sbjct: 308 ANALVGMYRRCGDMKSAFKIFSKFARKCAASYNT-----MIVGYLENGN-VGKAKELFYQ 361

Query: 549 -ERQFKKEQAISW-IEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQMG 595
            E++  +   ISW   I   V  F   D+L   RD+L   +E  +  +G
Sbjct: 362 MEQEGVERDRISWNCMISGHVDNFMFDDALMLFRDLLMEGIEPDSFTLG 410



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 60/286 (20%), Positives = 114/286 (39%), Gaps = 37/286 (12%)

Query: 16  PNNCLIQSFLS-LISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRV 74
           PN     S L+ L+   Q   A+   + +    +R    T+  IL  C++  ++  GK+V
Sbjct: 505 PNVYTWNSILAGLVENKQYDLAMQLFNEMQVSSLRPDIYTVGIILAACSKLATIHRGKQV 564

Query: 75  HLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGM 134
           H +  +         +   L+ MY KCGS     +V++KI   NL  +N ML+ YA   M
Sbjct: 565 HAY-SIRAGYDSDAHIGATLVDMYAKCGSIKHCYQVYNKISNPNLVCHNAMLTAYA---M 620

Query: 135 MKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTI 194
             H                             EEG+  ++ +    +  +  +F  +L+ 
Sbjct: 621 HGHG----------------------------EEGIVIFRRMLDSRVRPDHVTFLSVLSS 652

Query: 195 CVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDAR-DVLT 253
           CV    +K+  +    +        +   + +VD  ++ G+L +A +L        D +T
Sbjct: 653 CVHAGSIKIGYECFYLMETYNITPTLKHYTCMVDLLSRAGKLDEAYQLIKNMPMEADSVT 712

Query: 254 WTTMVSG---YAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNG 296
           W+ ++ G   + ++   E A++   E+   N  ++  L   Y   G
Sbjct: 713 WSALLGGCFIHKEVALGEIAAEKLIELEPSNTGNYVLLANLYASAG 758


>gi|347954542|gb|AEP33771.1| organelle transcript processing 82, partial [Thlaspi arvense]
          Length = 673

 Score =  333 bits (855), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 189/556 (33%), Positives = 304/556 (54%), Gaps = 38/556 (6%)

Query: 34  SEAISSLDL---LAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFL 90
           S+ +S+L L   +   G+   + T  F+L+ CA+SK+ + G+++H H+ L     P  ++
Sbjct: 45  SDPVSALKLYVVMISLGLLPNSYTFPFLLKSCAKSKAFEEGQQIHGHV-LKLGYEPDLYV 103

Query: 91  SNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDV 150
              LISMY + G   DA KVFD+   +++ SY  +++GYA+ G ++ A+ +FD +  +DV
Sbjct: 104 HTSLISMYAQNGRLEDAHKVFDRSSHRDVVSYTALITGYASSGNIRSAQEMFDEIPVKDV 163

Query: 151 VSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQ 210
           VSWN MI GYA++G+ +E L+ +K + + ++  +E +   +L+ C +   ++L RQVH  
Sbjct: 164 VSWNAMISGYAETGSYKEALELFKEMMKTNVRPDEGTMVTVLSACAQSRSVELGRQVHSW 223

Query: 211 VLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESA 270
           +   GF SN+ I ++++D Y+KCG++                               E+A
Sbjct: 224 IDDHGFGSNLKIVNALIDLYSKCGQV-------------------------------ETA 252

Query: 271 SKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASI 330
             LF  +  K+ VSW TLI GYT   L ++AL LF  M+     PN  T  S L ACA +
Sbjct: 253 CGLFEGLSCKDVVSWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTIVSILPACAHL 312

Query: 331 VSLKHGKQVHGFLIRT--NFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWN 388
            ++  G+ +H ++ +   +  +   + +SLIDMY+KCG +    QVF+   +K  S  WN
Sbjct: 313 GAIDIGRWIHVYIDKKLKDVTNAPSLRTSLIDMYAKCGDIEAAHQVFNSMLHKSLSS-WN 371

Query: 389 TMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHD 448
            MI     HG       LF  M ++ ++PD IT   +L+AC+HSG +  G   F+SMT D
Sbjct: 372 AMIFGFAMHGRANAGFDLFSRMRKNGIEPDDITFVGLLSACSHSGKLDLGRHIFKSMTQD 431

Query: 449 LGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRK 508
             I P  EH+ C+I+LL  +G   +    ++ MP E D  +W +L   CR HGN+++   
Sbjct: 432 YDITPKLEHYGCMIDLLGHSGLFKEAKEMIKTMPMEPDGVIWCSLLKACRRHGNLELAES 491

Query: 509 VVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVH 568
               L+   P++  ++ LLS+IY+  G+   V KVR L+N +  KK    S IEI+++VH
Sbjct: 492 FARNLMKVEPENPGSYVLLSNIYATAGEWDEVAKVRALLNGKGMKKVPGCSSIEIDSEVH 551

Query: 569 AFSVSDSLHPMRDVLY 584
            F V D LHP    +Y
Sbjct: 552 EFIVGDKLHPRNREIY 567



 Score =  222 bits (565), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 128/398 (32%), Positives = 217/398 (54%), Gaps = 9/398 (2%)

Query: 137 HARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICV 196
           +A ++F  + E + + WNTM+ GYA S      LK Y V+    +  N ++F  +L  C 
Sbjct: 18  YAISVFATIQEPNQLIWNTMLRGYALSSDPVSALKLYVVMISLGLLPNSYTFPFLLKSCA 77

Query: 197 KLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTT 256
           K +  +  +Q+HG VL  G+  ++ + +S++  YA+ G L DA ++FD +  RDV+++T 
Sbjct: 78  KSKAFEEGQQIHGHVLKLGYEPDLYVHTSLISMYAQNGRLEDAHKVFDRSSHRDVVSYTA 137

Query: 257 MVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPN 316
           +++GYA  G++ SA ++F+E+P K+ VSW  +I+GY   G  ++ALELF  MM   +RP+
Sbjct: 138 LITGYASSGNIRSAQEMFDEIPVKDVVSWNAMISGYAETGSYKEALELFKEMMKTNVRPD 197

Query: 317 QHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFD 376
           + T  + L ACA   S++ G+QVH ++    F SN  ++++LID+YSKCG +     +F+
Sbjct: 198 EGTMVTVLSACAQSRSVELGRQVHSWIDDHGFGSNLKIVNALIDLYSKCGQVETACGLFE 257

Query: 377 LTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQ 436
               K + + WNT+I   T     ++A+ LF +M+RS   P+ +T+  IL AC H G + 
Sbjct: 258 GLSCK-DVVSWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTIVSILPACAHLGAID 316

Query: 437 EGL---TYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNAL 493
            G     Y +    D+   P+      LI++ A+ G  +        M ++  S  WNA+
Sbjct: 317 IGRWIHVYIDKKLKDVTNAPSLR--TSLIDMYAKCGDIEAAHQVFNSMLHKSLSS-WNAM 373

Query: 494 HGVCRIHGNIDMGRKVVDQLIDQN--PQSSATHGLLSS 529
                +HG  + G  +  ++      P      GLLS+
Sbjct: 374 IFGFAMHGRANAGFDLFSRMRKNGIEPDDITFVGLLSA 411



 Score =  101 bits (252), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 86/402 (21%), Positives = 166/402 (41%), Gaps = 72/402 (17%)

Query: 31  GQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFL 90
           G   EA+     + +  +R    T+  +L  CA+S+S++LG++VH  +           +
Sbjct: 177 GSYKEALELFKEMMKTNVRPDEGTMVTVLSACAQSRSVELGRQVHSWID-DHGFGSNLKI 235

Query: 91  SNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDV 150
            N LI +Y KCG    A  +F+ +  K++ S+N ++ GY ++ + K A  LF  M     
Sbjct: 236 VNALIDLYSKCGQVETACGLFEGLSCKDVVSWNTLIGGYTHMNLYKEALLLFQEM----- 290

Query: 151 VSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQ 210
                      +SG                 S N+ +   IL  C  L  + + R +H  
Sbjct: 291 ----------LRSGE----------------SPNDVTIVSILPACAHLGAIDIGRWIH-- 322

Query: 211 VLVTGFLSNVV----ISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGD 266
           V +   L +V     + +S++D YAKCG++  A ++F+    + + +W  M+ G+A    
Sbjct: 323 VYIDKKLKDVTNAPSLRTSLIDMYAKCGDIEAAHQVFNSMLHKSLSSWNAMIFGFA---- 378

Query: 267 MESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCA 326
                                       +G      +LF+RM    I P+  TF   L A
Sbjct: 379 ---------------------------MHGRANAGFDLFSRMRKNGIEPDDITFVGLLSA 411

Query: 327 CASIVSLKHGKQVHGFLIRT-NFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSM 385
           C+    L  G+ +   + +  +          +ID+    G   + +++      + + +
Sbjct: 412 CSHSGKLDLGRHIFKSMTQDYDITPKLEHYGCMIDLLGHSGLFKEAKEMIKTMPMEPDGV 471

Query: 386 LWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILN 427
           +W +++ A  +HG  E A     ++++  V+P+     V+L+
Sbjct: 472 IWCSLLKACRRHGNLELAESFARNLMK--VEPENPGSYVLLS 511


>gi|347954528|gb|AEP33764.1| organelle transcript processing 82, partial [Iberis amara]
          Length = 666

 Score =  333 bits (854), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 185/556 (33%), Positives = 303/556 (54%), Gaps = 38/556 (6%)

Query: 34  SEAISSLDL---LAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFL 90
           S+ +S+L L   +   G+   + T  F+L+ CA+SK+ K G+++H H+ L        ++
Sbjct: 70  SDPVSALKLYVCMISLGLLPNSYTFPFLLKSCAKSKAFKEGQQIHGHV-LKLGCDLDLYV 128

Query: 91  SNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDV 150
              LISMY + G   DA KVFD+ P +++ SY  ++ GYA+ G +++A+ +FD +  +DV
Sbjct: 129 HTSLISMYVQNGRLEDAHKVFDESPHRDVVSYTALIKGYASRGYIENAQKMFDEIPVKDV 188

Query: 151 VSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQ 210
           VSWN MI GYA++G  +E L+ +K + + ++  +E +   +++ C +   ++L RQVH  
Sbjct: 189 VSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVVSACAQSGSIELGRQVHSW 248

Query: 211 VLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESA 270
           +   GF SN+ I ++++D Y+KCGEL                               E+A
Sbjct: 249 IDDHGFGSNLKIVNALIDLYSKCGEL-------------------------------ETA 277

Query: 271 SKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASI 330
             LF  +P K+ +SW TLI GYT   L ++AL LF  M+     PN  T  S L ACA +
Sbjct: 278 CGLFEGLPYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHL 337

Query: 331 VSLKHGKQVHGFLIR--TNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWN 388
            ++  G+ +H ++ +      + + + +SLIDMY+KCG +    QVF+   +K  S  WN
Sbjct: 338 GAIDIGRWIHVYIDKRLKGVANASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSS-WN 396

Query: 389 TMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHD 448
            MI     HG  + +  +F  M ++ ++PD IT   +L+AC+HSG++  G   F SMT D
Sbjct: 397 AMIFGFAMHGRADASFDIFSRMRKNGIEPDDITFVGLLSACSHSGMLDLGRHIFRSMTQD 456

Query: 449 LGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRK 508
             + P  EH+ C+I+LL  +G   +    +  M  E D  +W +L   C++HGN+++G  
Sbjct: 457 YKMTPKLEHYGCMIDLLGHSGLFKEAEEMINTMEMEPDGVIWCSLLKACKMHGNVELGES 516

Query: 509 VVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVH 568
               LI   P++  ++ LLS+IY+  G+   V   R L+N++  KK    S IEI++ VH
Sbjct: 517 FAQNLIKIEPENPGSYVLLSNIYATAGRWNEVANTRALLNDKGMKKVPGCSSIEIDSVVH 576

Query: 569 AFSVSDSLHPMRDVLY 584
            F + D  HP    +Y
Sbjct: 577 EFIIGDKFHPRNREIY 592



 Score =  216 bits (549), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 129/402 (32%), Positives = 215/402 (53%), Gaps = 13/402 (3%)

Query: 135 MKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTI 194
           + +A ++F+ + E +++ WNTM  G+A S      LK Y  +    +  N ++F  +L  
Sbjct: 41  LPYAISVFETIQEPNLLIWNTMFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFLLKS 100

Query: 195 CVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTW 254
           C K +  K  +Q+HG VL  G   ++ + +S++  Y + G L DA ++FDE+  RDV+++
Sbjct: 101 CAKSKAFKEGQQIHGHVLKLGCDLDLYVHTSLISMYVQNGRLEDAHKVFDESPHRDVVSY 160

Query: 255 TTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIR 314
           T ++ GYA  G +E+A K+F+E+P K+ VSW  +I+GY   G  ++ALELF  MM   +R
Sbjct: 161 TALIKGYASRGYIENAQKMFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVR 220

Query: 315 PNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQV 374
           P++ T  + + ACA   S++ G+QVH ++    F SN  ++++LID+YSKCG L     +
Sbjct: 221 PDESTMVTVVSACAQSGSIELGRQVHSWIDDHGFGSNLKIVNALIDLYSKCGELETACGL 280

Query: 375 FDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGL 434
           F+    K+  + WNT+I   T     ++A+ LF +M+RS   P+ +T+  IL AC H G 
Sbjct: 281 FEGLPYKD-VISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGA 339

Query: 435 VQEGLTYFESMTHDLGIIPNQEH-HACLIELLAQAG---CSDQLMNQLEKMPYEHDSY-L 489
           +  G      +   L  + N       LI++ A+ G    + Q+ N +      H S   
Sbjct: 340 IDIGRWIHVYIDKRLKGVANASSLRTSLIDMYAKCGDIEAAHQVFNSI-----LHKSLSS 394

Query: 490 WNALHGVCRIHGNIDMGRKVVDQLIDQN--PQSSATHGLLSS 529
           WNA+     +HG  D    +  ++      P      GLLS+
Sbjct: 395 WNAMIFGFAMHGRADASFDIFSRMRKNGIEPDDITFVGLLSA 436



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 85/408 (20%), Positives = 167/408 (40%), Gaps = 84/408 (20%)

Query: 31  GQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFL 90
           G   EA+     + +  +R    T+  ++  CA+S S++LG++VH  +           +
Sbjct: 202 GNYKEALELFKDMMKTNVRPDESTMVTVVSACAQSGSIELGRQVHSWID-DHGFGSNLKI 260

Query: 91  SNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDV 150
            N LI +Y KCG    A  +F+ +P K++ S+N ++ GY ++ + K A  LF  M     
Sbjct: 261 VNALIDLYSKCGELETACGLFEGLPYKDVISWNTLIGGYTHMNLYKEALLLFQEM----- 315

Query: 151 VSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQ 210
                      +SG                   N+ +   IL  C  L  + + R +H  
Sbjct: 316 ----------LRSGETP----------------NDVTMLSILPACAHLGAIDIGRWIHVY 349

Query: 211 V--LVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDME 268
           +   + G  +   + +S++D YAKCG++  A ++F+    + + +W  M+ G+A      
Sbjct: 350 IDKRLKGVANASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIFGFA------ 403

Query: 269 SASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACA 328
                                     +G    + ++F+RM    I P+  TF   L AC+
Sbjct: 404 -------------------------MHGRADASFDIFSRMRKNGIEPDDITFVGLLSACS 438

Query: 329 SIVSLKHGKQVHGFLIRTNFRSNT--IVMSS-------LIDMYSKCGCLNDGRQVFDLTD 379
               L  G+ +        FRS T    M+        +ID+    G   +  ++ +  +
Sbjct: 439 HSGMLDLGRHI--------FRSMTQDYKMTPKLEHYGCMIDLLGHSGLFKEAEEMINTME 490

Query: 380 NKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILN 427
            + + ++W +++ A   HG  E       ++++  ++P+     V+L+
Sbjct: 491 MEPDGVIWCSLLKACKMHGNVELGESFAQNLIK--IEPENPGSYVLLS 536


>gi|296082284|emb|CBI21289.3| unnamed protein product [Vitis vinifera]
          Length = 581

 Score =  333 bits (854), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 164/458 (35%), Positives = 276/458 (60%), Gaps = 3/458 (0%)

Query: 141 LFDNMAER-DVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLE 199
           LF+   ++ +V SWN++I   A+SG   E L+ +  +R+ S+  N  +F   +  C  L 
Sbjct: 31  LFNKYVDKTNVFSWNSVIAELARSGDSVEALRAFSSMRKLSLKPNRSTFPCAIKSCSALL 90

Query: 200 ELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVS 259
           +L   RQ H Q L+ GF  ++ +SS++VD Y+KCGEL DAR LFDE   R++++WT+M++
Sbjct: 91  DLHSGRQAHQQALIFGFEPDLFVSSALVDMYSKCGELRDARTLFDEISHRNIVSWTSMIT 150

Query: 260 GYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMI-LRIRPNQH 318
           GY +  D   A ++F+ M E++ +SW ++IA Y +NG+  +++E+F RM+    I  N  
Sbjct: 151 GYVQNDDAHRALRVFDGMAERDVISWNSIIAVYAQNGMSTESMEIFHRMVKDGEINYNAV 210

Query: 319 TFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLT 378
           T S+ L ACA   S + GK +H  +I+    SN  V +S+IDMY KCG +   R+ FD  
Sbjct: 211 TLSAVLLACAHSGSQRLGKCIHDQVIKMGLESNVFVGTSIIDMYCKCGKVEMARKAFDRM 270

Query: 379 DNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEG 438
             K N   W+ M++    HG+ ++A+ +F++M  + VKP+ IT   +L AC+H+GL++EG
Sbjct: 271 REK-NVKSWSAMVAGYGMHGHAKEALEVFYEMNMAGVKPNYITFVSVLAACSHAGLLEEG 329

Query: 439 LTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCR 498
             +F++M+H+  + P  EH+ C+++LL +AG   +  + ++ M    D  +W AL G CR
Sbjct: 330 WHWFKAMSHEFDVEPGVEHYGCMVDLLGRAGYLKEAFDLIKGMKLRPDFVVWGALLGACR 389

Query: 499 IHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAI 558
           +H N+D+G     +L + +P++   + LLS+IY+  G+   VE++R L+      K    
Sbjct: 390 MHKNVDLGEISARKLFELDPKNCGYYVLLSNIYADAGRWEDVERMRILMKNSGLVKPPGF 449

Query: 559 SWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQMGE 596
           S ++I+ +VH F V D  HP  + +Y  LE+L+ ++ E
Sbjct: 450 SLVDIKGRVHVFLVGDREHPQHEKIYEYLEKLSMKLQE 487



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 104/380 (27%), Positives = 178/380 (46%), Gaps = 48/380 (12%)

Query: 27  LISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTP 86
           L   G   EA+ +   + +  ++    T    ++ C+    L  G++ H    L     P
Sbjct: 51  LARSGDSVEALRAFSSMRKLSLKPNRSTFPCAIKSCSALLDLHSGRQAHQQ-ALIFGFEP 109

Query: 87  TTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMA 146
             F+S+ L+ MY KCG   DAR +FD+I  +N+ S+ +M++GY        A  +FD MA
Sbjct: 110 DLFVSSALVDMYSKCGELRDARTLFDEISHRNIVSWTSMITGYVQNDDAHRALRVFDGMA 169

Query: 147 ERDVVSWNTMIIGYAKSGAVEEGLK-FYKVLRRFSISCNEFSFAGILTICVKLEELKLTR 205
           ERDV+SWN++I  YA++G   E ++ F+++++   I+ N  + + +L  C      +L +
Sbjct: 170 ERDVISWNSIIAVYAQNGMSTESMEIFHRMVKDGEINYNAVTLSAVLLACAHSGSQRLGK 229

Query: 206 QVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLG 265
            +H QV+  G  SNV + +SI+D Y KCG++  AR+ FD    ++V +W+ MV+GY   G
Sbjct: 230 CIHDQVIKMGLESNVFVGTSIIDMYCKCGKVEMARKAFDRMREKNVKSWSAMVAGYGMHG 289

Query: 266 DMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLC 325
             + A                               LE+F  M +  ++PN  TF S L 
Sbjct: 290 HAKEA-------------------------------LEVFYEMNMAGVKPNYITFVSVLA 318

Query: 326 ACASIVSLKHG-----KQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDN 380
           AC+    L+ G        H F +             ++D+  + G L   ++ FDL   
Sbjct: 319 ACSHAGLLEEGWHWFKAMSHEFDVEPGVEH----YGCMVDLLGRAGYL---KEAFDLIKG 371

Query: 381 ---KENSMLWNTMISALTQH 397
              + + ++W  ++ A   H
Sbjct: 372 MKLRPDFVVWGALLGACRMH 391


>gi|195647336|gb|ACG43136.1| pentatricopeptide repeat protein PPR868-14 [Zea mays]
          Length = 788

 Score =  333 bits (854), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 170/503 (33%), Positives = 288/503 (57%), Gaps = 10/503 (1%)

Query: 92  NHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVV 151
           N LI++Y + G    A +VFD + V+++ S+  +L  YA+LG +  AR + D M  R+ V
Sbjct: 286 NSLITLYLRMGDAAAAHRVFDDMEVRDVVSWTALLDVYADLGDLYGARRVLDAMPARNEV 345

Query: 152 SWNTMIIGYAKSGAVEEGLKFYKVLR----RFSISCNEFSFAGILTICVKLEELKLTRQV 207
           SW T+I  + + G   E LK Y  +     R +ISC    F+ +L+ C  L++L+   ++
Sbjct: 346 SWGTLIARHEQKGDTAEALKLYSQMLADGCRPNISC----FSSVLSACATLQDLRGGTRI 401

Query: 208 HGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDM 267
           H   L  G  +N+ +SSS++D Y KC + + A+R+F+    ++ + W +++SGY+  G M
Sbjct: 402 HANALKMGSSTNLFVSSSLIDMYCKCKQCTYAQRVFNSLPEKNTVCWNSLISGYSWNGKM 461

Query: 268 ESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCAC 327
             A  LFN+MP +N VSW T+I+GY  N     AL  F  M+     P + T SS L AC
Sbjct: 462 VEAEGLFNKMPARNSVSWNTMISGYAENRRFGDALNYFYAMLASGHIPGEITLSSVLLAC 521

Query: 328 ASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLW 387
           A++ SL+ G+ VH  +++     N  + ++L DMY+K G L+  R+VF     K N++ W
Sbjct: 522 ANLCSLEMGRMVHAEIVKLGIEDNIFMGTALSDMYAKSGDLDSSRRVFYQMPEK-NNITW 580

Query: 388 NTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTH 447
             M+  L ++G+ E++I LF DM+ + + P++ T   IL AC+H GLV++ + YFE+M  
Sbjct: 581 TAMVQGLAENGFAEESISLFEDMIENGIAPNEHTFLAILFACSHCGLVEQAIHYFETMQA 640

Query: 448 DLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGR 507
             GI P  +H+ C++++LA+AGC  +    L K+  E D+  W++L   C  + N ++G 
Sbjct: 641 H-GIPPKSKHYTCMVDVLARAGCLPEAEELLMKVSSELDTSSWSSLLSACSTYRNKEIGE 699

Query: 508 KVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKV 567
           +   +L +    ++A + LLS++Y++ GK +   + R L+     KK+   SW+++  + 
Sbjct: 700 RAAKKLHELEKDNTAGYVLLSNMYASCGKWKDAAETRILMQGASLKKDAGCSWLQLRGQY 759

Query: 568 HAFSVSDSLHPMRDVLYSVLEQL 590
           HAF      HP+   +Y +L+ L
Sbjct: 760 HAFFSWKEKHPLSLEIYEILDLL 782



 Score =  188 bits (478), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 125/438 (28%), Positives = 228/438 (52%), Gaps = 16/438 (3%)

Query: 87  TTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMA 146
           ++F  + ++S + K G    AR++F  +P K++ SY  M+      G ++ A  L++   
Sbjct: 148 SSFTYDFMVSEHVKAGDIASARRLFYGMPEKSVVSYTTMVDALMKRGSVRDAVELYERCP 207

Query: 147 ERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQ 206
              V  +  MI G+ ++   ++    ++ +   S+  N  +   ++  CV   E  L   
Sbjct: 208 LHSVAFFTAMISGFVRNELHKDAFPVFRKMLTCSVRPNVVTLICVIKACVGAGEFDLAMG 267

Query: 207 VHG-QVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLG 265
           V G  V    F  ++ + +S++  Y + G+ + A R+FD+ + RDV++WT ++  YA LG
Sbjct: 268 VVGLAVKCNLFEKSIEVHNSLITLYLRMGDAAAAHRVFDDMEVRDVVSWTALLDVYADLG 327

Query: 266 DMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLC 325
           D+  A ++ + MP +N VSW TLIA + + G   +AL+L+++M+    RPN   FSS L 
Sbjct: 328 DLYGARRVLDAMPARNEVSWGTLIARHEQKGDTAEALKLYSQMLADGCRPNISCFSSVLS 387

Query: 326 ACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSM 385
           ACA++  L+ G ++H   ++    +N  V SSLIDMY KC      ++VF+    K N++
Sbjct: 388 ACATLQDLRGGTRIHANALKMGSSTNLFVSSSLIDMYCKCKQCTYAQRVFNSLPEK-NTV 446

Query: 386 LWNTMISALTQHGYDEQAIRLFHDM-VRSSVKPDKITLAVILNACTHSGLVQEGLTYFES 444
            WN++IS  + +G   +A  LF+ M  R+SV     +   +++    +    + L YF +
Sbjct: 447 CWNSLISGYSWNGKMVEAEGLFNKMPARNSV-----SWNTMISGYAENRRFGDALNYFYA 501

Query: 445 MTHDLGIIPNQEHHACLIELLAQAG-CSDQLMN----QLEKMPYEHDSYLWNALHGVCRI 499
           M    G IP +   + +  LLA A  CS ++      ++ K+  E + ++  AL  +   
Sbjct: 502 MLAS-GHIPGEITLSSV--LLACANLCSLEMGRMVHAEIVKLGIEDNIFMGTALSDMYAK 558

Query: 500 HGNIDMGRKVVDQLIDQN 517
            G++D  R+V  Q+ ++N
Sbjct: 559 SGDLDSSRRVFYQMPEKN 576



 Score =  168 bits (425), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 107/391 (27%), Positives = 190/391 (48%), Gaps = 49/391 (12%)

Query: 30  KGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTF 89
           KG  +EA+     +   G R      + +L  CA  + L+ G R+H +  L    +   F
Sbjct: 357 KGDTAEALKLYSQMLADGCRPNISCFSSVLSACATLQDLRGGTRIHAN-ALKMGSSTNLF 415

Query: 90  LSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERD 149
           +S+ LI MY KC     A++VF+ +P KN   +N+++SGY+  G M  A  LF+ M  R+
Sbjct: 416 VSSSLIDMYCKCKQCTYAQRVFNSLPEKNTVCWNSLISGYSWNGKMVEAEGLFNKMPARN 475

Query: 150 VVSWNTMIIGYAKSGAVEEGLK-FYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVH 208
            VSWNTMI GYA++    + L  FY +L    I   E + + +L  C  L  L++ R VH
Sbjct: 476 SVSWNTMISGYAENRRFGDALNYFYAMLASGHIP-GEITLSSVLLACANLCSLEMGRMVH 534

Query: 209 GQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDME 268
            +++  G   N+ + +++ D YAK G+L  +RR+F +   ++ +TWT MV G A+     
Sbjct: 535 AEIVKLGIEDNIFMGTALSDMYAKSGDLDSSRRVFYQMPEKNNITWTAMVQGLAE----- 589

Query: 269 SASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACA 328
                                     NG  ++++ LF  M+   I PN+HTF + L AC+
Sbjct: 590 --------------------------NGFAEESISLFEDMIENGIAPNEHTFLAILFACS 623

Query: 329 SIVSLKHG------KQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKE 382
               ++         Q HG   ++         + ++D+ ++ GCL +  ++     ++ 
Sbjct: 624 HCGLVEQAIHYFETMQAHGIPPKSKH------YTCMVDVLARAGCLPEAEELLMKVSSEL 677

Query: 383 NSMLWNTMISALTQH---GYDEQAIRLFHDM 410
           ++  W++++SA + +      E+A +  H++
Sbjct: 678 DTSSWSSLLSACSTYRNKEIGERAAKKLHEL 708



 Score = 93.2 bits (230), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 84/359 (23%), Positives = 148/359 (41%), Gaps = 69/359 (19%)

Query: 201 LKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDE---TDARDVLTWTTM 257
           L L   +H     +G  ++  ++S+++ AYA     +D  + F +    DA    T+  M
Sbjct: 96  LPLVLSLHAHAFRSGLTADRSVASNLLTAYAAFTRAADRDQAFRDCVAADAASSFTYDFM 155

Query: 258 VSGYAKLGDMESASKLFNEMPEKNPVSWTT------------------------------ 287
           VS + K GD+ SA +LF  MPEK+ VS+TT                              
Sbjct: 156 VSEHVKAGDIASARRLFYGMPEKSVVSYTTMVDALMKRGSVRDAVELYERCPLHSVAFFT 215

Query: 288 -LIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACA---------SIVSL---- 333
            +I+G+ RN L + A  +F +M+   +RPN  T    + AC           +V L    
Sbjct: 216 AMISGFVRNELHKDAFPVFRKMLTCSVRPNVVTLICVIKACVGAGEFDLAMGVVGLAVKC 275

Query: 334 ---KHGKQVHGFLIRTNFR----------------SNTIVMSSLIDMYSKCGCLNDGRQV 374
              +   +VH  LI    R                 + +  ++L+D+Y+  G L   R+V
Sbjct: 276 NLFEKSIEVHNSLITLYLRMGDAAAAHRVFDDMEVRDVVSWTALLDVYADLGDLYGARRV 335

Query: 375 FDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGL 434
            D    + N + W T+I+   Q G   +A++L+  M+    +P+    + +L+AC     
Sbjct: 336 LDAMPAR-NEVSWGTLIARHEQKGDTAEALKLYSQMLADGCRPNISCFSSVLSACATLQD 394

Query: 435 VQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNAL 493
           ++ G T   +    +G   N    + LI++  +             +P E ++  WN+L
Sbjct: 395 LRGG-TRIHANALKMGSSTNLFVSSSLIDMYCKCKQCTYAQRVFNSLP-EKNTVCWNSL 451


>gi|449436619|ref|XP_004136090.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15930-like [Cucumis sativus]
          Length = 723

 Score =  333 bits (854), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 172/536 (32%), Positives = 292/536 (54%), Gaps = 33/536 (6%)

Query: 43  LAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCG 102
           + +RG++    T  F+ +      +L+ G+++H H+ L        F+   L+ MY  CG
Sbjct: 109 MLRRGVKPDRYTFPFLFKGFTRDIALEYGRQLHGHV-LKHGLQYNVFVHTALVQMYLLCG 167

Query: 103 SDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAK 162
                                           +  AR +FD   + DV++WN +I  Y K
Sbjct: 168 Q-------------------------------LDTARGVFDVCPKADVITWNMIISAYNK 196

Query: 163 SGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVI 222
            G  EE  + + V+    +     +   +L+ C KL++L+  ++VH  V      SN+V+
Sbjct: 197 VGKFEESRRLFLVMEDKQVLPTTVTLVLVLSACSKLKDLRTGKKVHSYVKNCKVESNLVL 256

Query: 223 SSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNP 282
            ++++D YA CGE+  A  +F   + RD+++WTT+VSG+  LG+++ A   F++MPEK+ 
Sbjct: 257 ENAMIDMYADCGEMDSALGIFRSMNNRDIISWTTIVSGFTNLGEIDVARNYFDKMPEKDY 316

Query: 283 VSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGF 342
           VSWT +I GY R+   ++ALELF  M    ++P++ T  S L ACA + +L+ G+ +  +
Sbjct: 317 VSWTAMIDGYIRSNRFKEALELFRNMQATNVKPDEFTMVSVLTACAHLGALELGEWIRTY 376

Query: 343 LIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQ 402
           + R   +++  V ++LIDMY KCG ++    +F     ++    W  MI  L  +G+ E+
Sbjct: 377 IDRNKIKNDLFVRNALIDMYFKCGDVDKAESIFREMSQRD-KFTWTAMIVGLAVNGHGEK 435

Query: 403 AIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLI 462
           A+ +F +M+++S+ PD+IT   +L+ACTH+GLV +G  YF  MT   GI PN  H+ CL+
Sbjct: 436 ALDMFSNMLKASILPDEITYIGVLSACTHTGLVDKGRKYFLRMTSQHGIEPNIAHYGCLV 495

Query: 463 ELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSA 522
           +LLA+AG   +    +E MP + +S +W AL   CR++   DM   VV Q+++  P + A
Sbjct: 496 DLLARAGRLKEAYEVIENMPIKANSIVWGALLAGCRVYRESDMAEMVVKQILELEPDNGA 555

Query: 523 THGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHP 578
            + LL +IY+A  +   + ++RQ++ ++  KK    S IE+  +VH F   D  HP
Sbjct: 556 VYVLLCNIYAACKRWNDLRELRQMMMDKGIKKTPGCSLIEMNGRVHEFVAGDRSHP 611



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 107/417 (25%), Positives = 190/417 (45%), Gaps = 78/417 (18%)

Query: 133 GMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGIL 192
           G  ++AR LFD + E ++  WNTMI GY++    + G+  Y  + R  +  + ++F  + 
Sbjct: 66  GDFQYARRLFDEIPEPNLFIWNTMIRGYSRLDFPQLGVSLYLEMLRRGVKPDRYTFPFLF 125

Query: 193 TICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVL 252
               +   L+  RQ+HG VL  G   NV + +++V  Y  CG+L  AR +FD     DV+
Sbjct: 126 KGFTRDIALEYGRQLHGHVLKHGLQYNVFVHTALVQMYLLCGQLDTARGVFDVCPKADVI 185

Query: 253 TWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILR 312
           TW  ++S Y K+G  E + +LF  M +K                               +
Sbjct: 186 TWNMIISAYNKVGKFEESRRLFLVMEDK-------------------------------Q 214

Query: 313 IRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGR 372
           + P   T    L AC+ +  L+ GK+VH ++      SN ++ +++IDMY+ CG ++   
Sbjct: 215 VLPTTVTLVLVLSACSKLKDLRTGKKVHSYVKNCKVESNLVLENAMIDMYADCGEMDSAL 274

Query: 373 QVFDLTDNKENSMLWNTMISALTQHG--------YD-----------------------E 401
            +F   +N++  + W T++S  T  G        +D                       +
Sbjct: 275 GIFRSMNNRD-IISWTTIVSGFTNLGEIDVARNYFDKMPEKDYVSWTAMIDGYIRSNRFK 333

Query: 402 QAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEG---LTYFE--SMTHDLGIIPNQE 456
           +A+ LF +M  ++VKPD+ T+  +L AC H G ++ G    TY +   + +DL +     
Sbjct: 334 EALELFRNMQATNVKPDEFTMVSVLTACAHLGALELGEWIRTYIDRNKIKNDLFV----- 388

Query: 457 HHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQL 513
               LI++  + G  D+  +   +M  + D + W A+     ++G+   G K +D  
Sbjct: 389 -RNALIDMYFKCGDVDKAESIFREMS-QRDKFTWTAMIVGLAVNGH---GEKALDMF 440



 Score = 72.4 bits (176), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 57/257 (22%), Positives = 109/257 (42%), Gaps = 34/257 (13%)

Query: 28  ISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPT 87
           I   +  EA+     +    ++    T+  +L  CA   +L+LG+ +  ++   + K   
Sbjct: 327 IRSNRFKEALELFRNMQATNVKPDEFTMVSVLTACAHLGALELGEWIRTYIDRNKIKN-D 385

Query: 88  TFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAE 147
            F+ N LI MYFKCG DVD                               A ++F  M++
Sbjct: 386 LFVRNALIDMYFKCG-DVDK------------------------------AESIFREMSQ 414

Query: 148 RDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQV 207
           RD  +W  MI+G A +G  E+ L  +  + + SI  +E ++ G+L+ C     +   R+ 
Sbjct: 415 RDKFTWTAMIVGLAVNGHGEKALDMFSNMLKASILPDEITYIGVLSACTHTGLVDKGRKY 474

Query: 208 HGQVLVT-GFLSNVVISSSIVDAYAKCGELSDARRLFDETDAR-DVLTWTTMVSGYAKLG 265
             ++    G   N+     +VD  A+ G L +A  + +    + + + W  +++G     
Sbjct: 475 FLRMTSQHGIEPNIAHYGCLVDLLARAGRLKEAYEVIENMPIKANSIVWGALLAGCRVYR 534

Query: 266 DMESASKLFNEMPEKNP 282
           + + A  +  ++ E  P
Sbjct: 535 ESDMAEMVVKQILELEP 551


>gi|225456713|ref|XP_002267998.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 618

 Score =  333 bits (854), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 191/580 (32%), Positives = 320/580 (55%), Gaps = 40/580 (6%)

Query: 16  PNNCLIQSFLSLISKGQLS-EAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRV 74
           P+  +  SF++  S+  L+ EA+ +   + Q  +R+   T+  I + CA   ++ +GK+V
Sbjct: 59  PDQGVHCSFITAYSRLSLNNEALRTFVSMHQNNVRIVCFTIPPIFKSCASLLAIDVGKQV 118

Query: 75  HLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGM 134
           H  L +      + F  N LI+ Y K      A  +FD I VK+  +YN ++S Y+  G 
Sbjct: 119 H-SLVIRYGFHSSVFCQNALINFYAKINDLGSAELIFDGILVKDTIAYNCLISAYSRSGE 177

Query: 135 MKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTI 194
           +  AR LFD M +R +VSWN MI  YA++G   +G   ++ ++      NE + A +L+I
Sbjct: 178 VLAARELFDKMRDRSIVSWNAMISCYAQNGDYHKGWIIFQRMQDEMCEPNEITLATVLSI 237

Query: 195 CVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTW 254
           C KL +L++  ++          SN+++S+++++ Y KCG + D  RL            
Sbjct: 238 CAKLGDLEMGLRIKKLNDNKNLGSNMIVSTAMLEMYVKCGAV-DDGRL------------ 284

Query: 255 TTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIR 314
                             +F+ M  ++ V+W+ +IAGY +NG   +ALELF  M   +I+
Sbjct: 285 ------------------VFDHMARRDVVTWSAMIAGYAQNGRSNEALELFENMKSAQIK 326

Query: 315 PNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQV 374
           PN  T  S L ACA + S++ G+++  ++      SN  V S+L+ MYSKCG +   RQ+
Sbjct: 327 PNDVTLVSVLSACAQLGSVETGERIGSYVESRGLISNVYVASALLGMYSKCGNIIKARQI 386

Query: 375 FDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGL 434
           FD    ++N + WN+MI  L  +G+ E AI L++ M    VKP+ IT   ++ ACTH+G 
Sbjct: 387 FDKLPQRDN-VTWNSMIMGLAINGFAEDAIALYNRMKEIEVKPNNITFVGLMTACTHAGH 445

Query: 435 VQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLE---KMPYEHDSYLWN 491
           V+ GL +F SM  D  I PN EH AC+++L  ++G   +L++  E   +M  E +  +W 
Sbjct: 446 VELGLEFFRSMRSDHNISPNIEHFACIVDLFCRSG---RLIDAYEFICRMEVEPNVVIWG 502

Query: 492 ALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQ 551
            L    RIH N+++      +L++  P +S  + +LS+IY++ G+ +   KVR+L+ +++
Sbjct: 503 TLLSASRIHLNVELAELAGKKLLELEPDNSGNYVILSNIYASAGRWQEALKVRKLMKDKR 562

Query: 552 FKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLA 591
            +K  A SW+E+E++VH F V D+ HP  D +YS ++ LA
Sbjct: 563 VQKAAAYSWVEVEDRVHKFLVGDTSHPRSDEVYSTIDGLA 602



 Score =  184 bits (468), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 108/401 (26%), Positives = 209/401 (52%), Gaps = 5/401 (1%)

Query: 131 NLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAG 190
           N   +++AR +FD +   D     + I  Y++     E L+ +  + + ++    F+   
Sbjct: 42  NASFIQYARQVFDQIPHPDQGVHCSFITAYSRLSLNNEALRTFVSMHQNNVRIVCFTIPP 101

Query: 191 ILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARD 250
           I   C  L  + + +QVH  V+  GF S+V   +++++ YAK  +L  A  +FD    +D
Sbjct: 102 IFKSCASLLAIDVGKQVHSLVIRYGFHSSVFCQNALINFYAKINDLGSAELIFDGILVKD 161

Query: 251 VLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMI 310
            + +  ++S Y++ G++ +A +LF++M +++ VSW  +I+ Y +NG   K   +F RM  
Sbjct: 162 TIAYNCLISAYSRSGEVLAARELFDKMRDRSIVSWNAMISCYAQNGDYHKGWIIFQRMQD 221

Query: 311 LRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLND 370
               PN+ T ++ L  CA +  L+ G ++       N  SN IV +++++MY KCG ++D
Sbjct: 222 EMCEPNEITLATVLSICAKLGDLEMGLRIKKLNDNKNLGSNMIVSTAMLEMYVKCGAVDD 281

Query: 371 GRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACT 430
           GR VFD    + + + W+ MI+   Q+G   +A+ LF +M  + +KP+ +TL  +L+AC 
Sbjct: 282 GRLVFDHM-ARRDVVTWSAMIAGYAQNGRSNEALELFENMKSAQIKPNDVTLVSVLSACA 340

Query: 431 HSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLW 490
             G V+ G     S     G+I N    + L+ + ++ G   +     +K+P + D+  W
Sbjct: 341 QLGSVETG-ERIGSYVESRGLISNVYVASALLGMYSKCGNIIKARQIFDKLP-QRDNVTW 398

Query: 491 NALHGVCRIHGNIDMGRKVVDQL--IDQNPQSSATHGLLSS 529
           N++     I+G  +    + +++  I+  P +    GL+++
Sbjct: 399 NSMIMGLAINGFAEDAIALYNRMKEIEVKPNNITFVGLMTA 439


>gi|449491161|ref|XP_004158817.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At3g15930-like [Cucumis
           sativus]
          Length = 744

 Score =  333 bits (854), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 172/536 (32%), Positives = 292/536 (54%), Gaps = 33/536 (6%)

Query: 43  LAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCG 102
           + +RG++    T  F+ +      +L+ G+++H H+ L        F+   L+ MY  CG
Sbjct: 130 MLRRGVKPDRYTFPFLFKGFTRDIALEYGRQLHGHV-LKHGLQYNVFVHTALVQMYLLCG 188

Query: 103 SDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAK 162
                                           +  AR +FD   + DV++WN +I  Y K
Sbjct: 189 Q-------------------------------LDTARGVFDVCPKADVITWNMIISAYNK 217

Query: 163 SGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVI 222
            G  EE  + + V+    +     +   +L+ C KL++L+  ++VH  V      SN+V+
Sbjct: 218 VGKFEESRRLFLVMEDKQVLPTTVTLVLVLSACSKLKDLRTGKKVHSYVKNCKVESNLVL 277

Query: 223 SSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNP 282
            ++++D YA CGE+  A  +F   + RD+++WTT+VSG+  LG+++ A   F++MPEK+ 
Sbjct: 278 ENAMIDMYADCGEMDSALGIFRSMNNRDIISWTTIVSGFTNLGEIDVARNYFDKMPEKDY 337

Query: 283 VSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGF 342
           VSWT +I GY R+   ++ALELF  M    ++P++ T  S L ACA + +L+ G+ +  +
Sbjct: 338 VSWTAMIDGYIRSNRFKEALELFRNMQATNVKPDEFTMVSVLTACAHLGALELGEWIRTY 397

Query: 343 LIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQ 402
           + R   +++  V ++LIDMY KCG ++    +F     ++    W  MI  L  +G+ E+
Sbjct: 398 IDRNKIKNDLFVRNALIDMYFKCGDVDKAESIFREMSQRD-KFTWTAMIVGLAVNGHGEK 456

Query: 403 AIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLI 462
           A+ +F +M+++S+ PD+IT   +L+ACTH+GLV +G  YF  MT   GI PN  H+ CL+
Sbjct: 457 ALDMFSNMLKASILPDEITYIGVLSACTHTGLVDKGRKYFLRMTSQHGIEPNIAHYGCLV 516

Query: 463 ELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSA 522
           +LLA+AG   +    +E MP + +S +W AL   CR++   DM   VV Q+++  P + A
Sbjct: 517 DLLARAGRLKEAYEVIENMPIKANSIVWGALLAGCRVYRESDMAEMVVKQILELEPDNGA 576

Query: 523 THGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHP 578
            + LL +IY+A  +   + ++RQ++ ++  KK    S IE+  +VH F   D  HP
Sbjct: 577 VYVLLCNIYAACKRWNDLRELRQMMMDKGIKKXPGCSLIEMNGRVHEFVAGDRSHP 632



 Score =  154 bits (390), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 107/417 (25%), Positives = 190/417 (45%), Gaps = 78/417 (18%)

Query: 133 GMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGIL 192
           G  ++AR LFD + E ++  WNTMI GY++    + G+  Y  + R  +  + ++F  + 
Sbjct: 87  GDFQYARRLFDEIPEPNLFIWNTMIRGYSRLDFPQLGVSLYLEMLRRGVKPDRYTFPFLF 146

Query: 193 TICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVL 252
               +   L+  RQ+HG VL  G   NV + +++V  Y  CG+L  AR +FD     DV+
Sbjct: 147 KGFTRDIALEYGRQLHGHVLKHGLQYNVFVHTALVQMYLLCGQLDTARGVFDVCPKADVI 206

Query: 253 TWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILR 312
           TW  ++S Y K+G  E + +LF  M +K                               +
Sbjct: 207 TWNMIISAYNKVGKFEESRRLFLVMEDK-------------------------------Q 235

Query: 313 IRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGR 372
           + P   T    L AC+ +  L+ GK+VH ++      SN ++ +++IDMY+ CG ++   
Sbjct: 236 VLPTTVTLVLVLSACSKLKDLRTGKKVHSYVKNCKVESNLVLENAMIDMYADCGEMDSAL 295

Query: 373 QVFDLTDNKENSMLWNTMISALTQHG--------YD-----------------------E 401
            +F   +N++  + W T++S  T  G        +D                       +
Sbjct: 296 GIFRSMNNRD-IISWTTIVSGFTNLGEIDVARNYFDKMPEKDYVSWTAMIDGYIRSNRFK 354

Query: 402 QAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEG---LTYFE--SMTHDLGIIPNQE 456
           +A+ LF +M  ++VKPD+ T+  +L AC H G ++ G    TY +   + +DL +     
Sbjct: 355 EALELFRNMQATNVKPDEFTMVSVLTACAHLGALELGEWIRTYIDRNKIKNDLFV----- 409

Query: 457 HHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQL 513
               LI++  + G  D+  +   +M  + D + W A+     ++G+   G K +D  
Sbjct: 410 -RNALIDMYFKCGDVDKAESIFREMS-QRDKFTWTAMIVGLAVNGH---GEKALDMF 461



 Score = 72.8 bits (177), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 57/257 (22%), Positives = 109/257 (42%), Gaps = 34/257 (13%)

Query: 28  ISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPT 87
           I   +  EA+     +    ++    T+  +L  CA   +L+LG+ +  ++   + K   
Sbjct: 348 IRSNRFKEALELFRNMQATNVKPDEFTMVSVLTACAHLGALELGEWIRTYIDRNKIKN-D 406

Query: 88  TFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAE 147
            F+ N LI MYFKCG DVD                               A ++F  M++
Sbjct: 407 LFVRNALIDMYFKCG-DVDK------------------------------AESIFREMSQ 435

Query: 148 RDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQV 207
           RD  +W  MI+G A +G  E+ L  +  + + SI  +E ++ G+L+ C     +   R+ 
Sbjct: 436 RDKFTWTAMIVGLAVNGHGEKALDMFSNMLKASILPDEITYIGVLSACTHTGLVDKGRKY 495

Query: 208 HGQVLVT-GFLSNVVISSSIVDAYAKCGELSDARRLFDETDAR-DVLTWTTMVSGYAKLG 265
             ++    G   N+     +VD  A+ G L +A  + +    + + + W  +++G     
Sbjct: 496 FLRMTSQHGIEPNIAHYGCLVDLLARAGRLKEAYEVIENMPIKANSIVWGALLAGCRVYR 555

Query: 266 DMESASKLFNEMPEKNP 282
           + + A  +  ++ E  P
Sbjct: 556 ESDMAEMVVKQILELEP 572


>gi|293336045|ref|NP_001168520.1| uncharacterized protein LOC100382300 [Zea mays]
 gi|195615774|gb|ACG29717.1| pentatricopeptide repeat protein PPR868-14 [Zea mays]
 gi|223946951|gb|ACN27559.1| unknown [Zea mays]
          Length = 616

 Score =  333 bits (853), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 184/541 (34%), Positives = 300/541 (55%), Gaps = 17/541 (3%)

Query: 68  LKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLS 127
           L LG+ VH HL  T   T  T LSN L+++Y    S   A K F  +P KN  SYN +L+
Sbjct: 56  LHLGRAVHAHLVKTA-LTSHTLLSNRLVALYSSLPSPAAAVKAFYDLPHKNAHSYNTLLA 114

Query: 128 GY-ANLGMMKHARNLFDNMA--ERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRR-----F 179
                   +  A  LFD M    R++VS+NT++   A  G   E L+    L R      
Sbjct: 115 ALLRRPDTLPDAFRLFDTMPADSRNLVSYNTLMSSLAHHGRQVEALRVVARLARDRFLGP 174

Query: 180 SISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDA 239
            ++ + F+   + T C  +   +  R++HG V+V+G    V++++++++AY+K   + DA
Sbjct: 175 GLAMDRFTVVSVATACAGIGAARPLREMHGAVVVSGMEFTVIMANAMLNAYSKARRVEDA 234

Query: 240 RRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQ 299
           R LFD+   RD +TWT+M+SGY ++  +  A ++F+ MP+K+ ++WT LI+G+ +NG   
Sbjct: 235 RHLFDQVSIRDNVTWTSMISGYCQVKKLHEAVQVFDMMPDKDRIAWTALISGHEQNGEED 294

Query: 300 KALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRS---NTIVMS 356
            ALELF +M+   + P      S L ACA +  +  GK++H F++R N  S   N  + +
Sbjct: 295 TALELFEQMLAKGVSPTPFVLVSALGACAKLGLVTRGKELHCFILRRNIGSVPFNIFIHN 354

Query: 357 SLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVK 416
           +L+DMYSKCG +     VFD    + + + WN+M++  + +G  +Q++ +F +M+ + V+
Sbjct: 355 ALVDMYSKCGDMMAAMAVFDWMPER-DFISWNSMVTGFSHNGLGKQSLAIFEEMLVAGVR 413

Query: 417 PDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMN 476
           P  +T   +L AC+HSGLV  G    ESM  D G+ P  EH+A  I+ L +    ++   
Sbjct: 414 PTHVTFLAVLTACSHSGLVSNGRLVLESM-EDHGVEPRAEHYAAFIDALGRNHQLEEATE 472

Query: 477 QLEKMPYE---HDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSA 533
            ++ +P       +  W AL G CR+HGNI++  +V + L    P +S  + ++S+IY+A
Sbjct: 473 FIKDLPSRIGPGTAGSWGALLGACRLHGNIELAEEVAEFLFRLEPGNSGRYVMMSNIYAA 532

Query: 534 LGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQ 593
            G+     +VR L+ E+  KK+QA SWIE+ +  H F   D  H   D +Y +L +L   
Sbjct: 533 AGQWDDARRVRGLMKEKGLKKDQAYSWIEVRSAKHVFVADDISHCEADKIYEMLGKLLDH 592

Query: 594 M 594
           M
Sbjct: 593 M 593


>gi|223948849|gb|ACN28508.1| unknown [Zea mays]
 gi|413937254|gb|AFW71805.1| hypothetical protein ZEAMMB73_337002 [Zea mays]
          Length = 608

 Score =  333 bits (853), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 184/541 (34%), Positives = 300/541 (55%), Gaps = 17/541 (3%)

Query: 68  LKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLS 127
           L LG+ VH HL  T   T  T LSN L+++Y    S   A K F  +P KN  SYN +L+
Sbjct: 48  LHLGRAVHAHLVKTA-LTSHTLLSNRLVALYSSLPSPAAAVKAFYDLPHKNAHSYNTLLA 106

Query: 128 GY-ANLGMMKHARNLFDNMA--ERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRR-----F 179
                   +  A  LFD M    R++VS+NT++   A  G   E L+    L R      
Sbjct: 107 ALLRRPDTLPDAFRLFDTMPADSRNLVSYNTLMSSLAHHGRQVEALRVVARLARDRFLGP 166

Query: 180 SISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDA 239
            ++ + F+   + T C  +   +  R++HG V+V+G    V++++++++AY+K   + DA
Sbjct: 167 GLAMDRFTVVSVATACAGIGAARPLREMHGAVVVSGMEFTVIMANAMLNAYSKARRVEDA 226

Query: 240 RRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQ 299
           R LFD+   RD +TWT+M+SGY ++  +  A ++F+ MP+K+ ++WT LI+G+ +NG   
Sbjct: 227 RHLFDQVSIRDNVTWTSMISGYCQVKKLHEAVQVFDMMPDKDRIAWTALISGHEQNGEED 286

Query: 300 KALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRS---NTIVMS 356
            ALELF +M+   + P      S L ACA +  +  GK++H F++R N  S   N  + +
Sbjct: 287 TALELFEQMLAKGVSPTPFVLVSALGACAKLGLVTRGKELHCFILRRNIGSVPFNIFIHN 346

Query: 357 SLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVK 416
           +L+DMYSKCG +     VFD    + + + WN+M++  + +G  +Q++ +F +M+ + V+
Sbjct: 347 ALVDMYSKCGDMMAAMAVFDWMPER-DFISWNSMVTGFSHNGLGKQSLAIFEEMLVAGVR 405

Query: 417 PDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMN 476
           P  +T   +L AC+HSGLV  G    ESM  D G+ P  EH+A  I+ L +    ++   
Sbjct: 406 PTHVTFLAVLTACSHSGLVSNGRLVLESM-EDHGVEPRAEHYAAFIDALGRNHQLEEATE 464

Query: 477 QLEKMPYE---HDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSA 533
            ++ +P       +  W AL G CR+HGNI++  +V + L    P +S  + ++S+IY+A
Sbjct: 465 FIKDLPSRIGPGTAGSWGALLGACRLHGNIELAEEVAEFLFRLEPGNSGRYVMMSNIYAA 524

Query: 534 LGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQ 593
            G+     +VR L+ E+  KK+QA SWIE+ +  H F   D  H   D +Y +L +L   
Sbjct: 525 AGQWDDARRVRGLMKEKGLKKDQAYSWIEVRSAKHVFVADDISHCEADKIYEMLGKLLDH 584

Query: 594 M 594
           M
Sbjct: 585 M 585


>gi|449485565|ref|XP_004157209.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 953

 Score =  333 bits (853), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 181/572 (31%), Positives = 308/572 (53%), Gaps = 33/572 (5%)

Query: 54  TLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDK 113
           T   ++Q C+  +S    K+VH H+ L        ++ N LI+ +  C +  DA +VF++
Sbjct: 215 TYPLLIQACSIRRSEWEAKQVHNHV-LKLGFDSDVYVRNTLINCFSVCSNMTDACRVFNE 273

Query: 114 IPVKNLFSYNNMLSGYANLGMMKHARN-------------------------------LF 142
             V +  S+N++L+GY  +G ++ A++                               LF
Sbjct: 274 SSVLDSVSWNSILAGYIEIGNVEEAKHIYHQMPERSIIASNSMIVLFGMRGLVVEACKLF 333

Query: 143 DNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELK 202
           D M E+D+V+W+ +I  + ++   EE ++ +  + +  +  +E      L+ C  L  + 
Sbjct: 334 DEMLEKDMVTWSALIACFQQNEMYEEAIRTFVGMHKIGVMVDEVVAVSALSACANLLVVN 393

Query: 203 LTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYA 262
           + + +H   L  G  S + + ++++  Y+KCG++  AR+LFDE    D+++W +M+SGY 
Sbjct: 394 MGKLIHSLSLKIGTESYINLQNALIYMYSKCGDIMVARKLFDEAYLLDLISWNSMISGYL 453

Query: 263 KLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSS 322
           K   +++A  +F+ MPEK+ VSW+++I+GY +N L  + L LF  M +   +P++ T  S
Sbjct: 454 KCNLVDNAKAIFDSMPEKDVVSWSSMISGYAQNDLFDETLALFQEMQMSGFKPDETTLVS 513

Query: 323 CLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKE 382
            + ACA + +L+ GK VH ++ R     N I+ ++LIDMY KCGC+    +VF     K 
Sbjct: 514 VISACARLAALEQGKWVHAYIKRNGLTINVILGTTLIDMYMKCGCVETALEVFYGMIEKG 573

Query: 383 NSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYF 442
            S  WN +I  L  +G  E ++ +F +M +  V P++IT   +L AC H GLV EG  +F
Sbjct: 574 IST-WNALILGLAMNGLVESSLDMFSNMKKCHVTPNEITFMGVLGACRHMGLVDEGQHHF 632

Query: 443 ESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGN 502
            SM HD  I PN +H+ C+++LL +AG   +    L +MP   D   W AL G C+ HG+
Sbjct: 633 YSMIHDHKIQPNVKHYGCMVDLLGRAGKLQEAEELLNRMPMTPDVATWGALLGACKKHGD 692

Query: 503 IDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIE 562
            +MGR+V  +LI+  P     H LLS+IY++ GK   V ++R ++ + +  K    S IE
Sbjct: 693 SEMGRRVGRKLIELQPDHDGFHVLLSNIYASKGKWDDVLEIRGMMTKHRVLKIPGCSMIE 752

Query: 563 IENKVHAFSVSDSLHPMRDVLYSVLEQLAGQM 594
               +H F   D  HP  D +  +L ++A ++
Sbjct: 753 ANGVIHEFLAGDKTHPDMDAIEDMLVEMAMKL 784



 Score =  157 bits (397), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 101/399 (25%), Positives = 187/399 (46%), Gaps = 45/399 (11%)

Query: 35  EAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVH-LHLKLTQRKTPTTFLSNH 93
           EAI +   + + G+ +        L  CA    + +GK +H L LK+         L N 
Sbjct: 359 EAIRTFVGMHKIGVMVDEVVAVSALSACANLLVVNMGKLIHSLSLKIGTESYIN--LQNA 416

Query: 94  LISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSW 153
           LI MY KCG  + ARK+FD+  + +L S+N+M+SGY    ++ +A+ +FD+M E+DVVSW
Sbjct: 417 LIYMYSKCGDIMVARKLFDEAYLLDLISWNSMISGYLKCNLVDNAKAIFDSMPEKDVVSW 476

Query: 154 NTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLV 213
           ++MI GYA++   +E L  ++ ++      +E +   +++ C +L  L+  + VH  +  
Sbjct: 477 SSMISGYAQNDLFDETLALFQEMQMSGFKPDETTLVSVISACARLAALEQGKWVHAYIKR 536

Query: 214 TGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKL 273
            G   NV++ ++++D Y KCG +  A  +F     + + TW  ++ G A           
Sbjct: 537 NGLTINVILGTTLIDMYMKCGCVETALEVFYGMIEKGISTWNALILGLA----------- 585

Query: 274 FNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSL 333
                                NGL + +L++F+ M    + PN+ TF   L AC  +  +
Sbjct: 586 --------------------MNGLVESSLDMFSNMKKCHVTPNEITFMGVLGACRHMGLV 625

Query: 334 KHGKQ-----VHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWN 388
             G+      +H   I+ N +        ++D+  + G L +  ++ +      +   W 
Sbjct: 626 DEGQHHFYSMIHDHKIQPNVKH----YGCMVDLLGRAGKLQEAEELLNRMPMTPDVATWG 681

Query: 389 TMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILN 427
            ++ A  +HG  E   R+   ++   ++PD     V+L+
Sbjct: 682 ALLGACKKHGDSEMGRRVGRKLIE--LQPDHDGFHVLLS 718



 Score =  143 bits (360), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 94/396 (23%), Positives = 183/396 (46%), Gaps = 63/396 (15%)

Query: 159 GYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLS 218
            Y ++ +       YK +    +  + +++  ++  C         +QVH  VL  GF S
Sbjct: 187 AYIQTNSPHFAFTLYKSMLSNYLGADNYTYPLLIQACSIRRSEWEAKQVHNHVLKLGFDS 246

Query: 219 NVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESAS------- 271
           +V + +++++ ++ C  ++DA R+F+E+   D ++W ++++GY ++G++E A        
Sbjct: 247 DVYVRNTLINCFSVCSNMTDACRVFNESSVLDSVSWNSILAGYIEIGNVEEAKHIYHQMP 306

Query: 272 ------------------------KLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTR 307
                                   KLF+EM EK+ V+W+ LIA + +N + ++A+  F  
Sbjct: 307 ERSIIASNSMIVLFGMRGLVVEACKLFDEMLEKDMVTWSALIACFQQNEMYEEAIRTFVG 366

Query: 308 MMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGC 367
           M  + +  ++    S L ACA+++ +  GK +H   ++    S   + ++LI MYSKCG 
Sbjct: 367 MHKIGVMVDEVVAVSALSACANLLVVNMGKLIHSLSLKIGTESYINLQNALIYMYSKCGD 426

Query: 368 LNDGRQVFD---------------------LTDN---------KENSMLWNTMISALTQH 397
           +   R++FD                     L DN         +++ + W++MIS   Q+
Sbjct: 427 IMVARKLFDEAYLLDLISWNSMISGYLKCNLVDNAKAIFDSMPEKDVVSWSSMISGYAQN 486

Query: 398 GYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEH 457
              ++ + LF +M  S  KPD+ TL  +++AC     +++G  +  +     G+  N   
Sbjct: 487 DLFDETLALFQEMQMSGFKPDETTLVSVISACARLAALEQG-KWVHAYIKRNGLTINVIL 545

Query: 458 HACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNAL 493
              LI++  + GC +  +     M  E     WNAL
Sbjct: 546 GTTLIDMYMKCGCVETALEVFYGM-IEKGISTWNAL 580



 Score = 58.5 bits (140), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 63/307 (20%), Positives = 134/307 (43%), Gaps = 54/307 (17%)

Query: 291 GYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRS 350
            Y +      A  L+  M+   +  + +T+   + AC+   S    KQVH  +++  F S
Sbjct: 187 AYIQTNSPHFAFTLYKSMLSNYLGADNYTYPLLIQACSIRRSEWEAKQVHNHVLKLGFDS 246

Query: 351 NTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDM 410
           +  V ++LI+ +S C  + D  +VF+   +  +S+ WN++++   + G  E+A  ++H M
Sbjct: 247 DVYVRNTLINCFSVCSNMTDACRVFN-ESSVLDSVSWNSILAGYIEIGNVEEAKHIYHQM 305

Query: 411 VRSSV---------------------------KPDKITLAVILNACTHSGLVQEGLTYFE 443
              S+                           + D +T + ++     + + +E +  F 
Sbjct: 306 PERSIIASNSMIVLFGMRGLVVEACKLFDEMLEKDMVTWSALIACFQQNEMYEEAIRTFV 365

Query: 444 SMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYE------HDSY--LWNALHG 495
            M H +G++ ++     ++ + A + C++ L+  + K+ +        +SY  L NAL  
Sbjct: 366 GM-HKIGVMVDE-----VVAVSALSACANLLVVNMGKLIHSLSLKIGTESYINLQNALIY 419

Query: 496 VCRIHGNIDMGRKVVDQ--LIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFK 553
           +    G+I + RK+ D+  L+D    +S   G L        K  LV+  + + +     
Sbjct: 420 MYSKCGDIMVARKLFDEAYLLDLISWNSMISGYL--------KCNLVDNAKAIFD--SMP 469

Query: 554 KEQAISW 560
           ++  +SW
Sbjct: 470 EKDVVSW 476


>gi|119638439|gb|ABL85030.1| hypothetical protein 57h21.3 [Brachypodium sylvaticum]
          Length = 618

 Score =  333 bits (853), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 177/519 (34%), Positives = 281/519 (54%), Gaps = 41/519 (7%)

Query: 73  RVHLHLKLTQRKTPTTFLS-NHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYAN 131
           RV     L QR      +S N ++  Y   G   DA  +FD +PV++  S+N +L+    
Sbjct: 113 RVDEAEALFQRMPERNVVSWNTMLEAYTSAGRVRDAWTLFDGMPVRDAGSWNILLAALVR 172

Query: 132 LGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGI 191
            G M  AR LFD M ER+V++W TM+ G A+SG+V+E    +  +               
Sbjct: 173 SGNMDKARKLFDRMPERNVMAWTTMVAGIARSGSVDEARALFDGMPE------------- 219

Query: 192 LTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDV 251
                                      NVV  ++++  YA+   + +A  LF +   RD+
Sbjct: 220 --------------------------RNVVSWNAMISGYARNHRIDEAHDLFMKMPTRDI 253

Query: 252 LTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMIL 311
            +W  M++G+ +  D+E A  LF++MP +N ++WTT++ GY ++   + AL++F  M++ 
Sbjct: 254 ASWNIMITGFIQDRDLERAQDLFDKMPRRNVITWTTMMNGYLQSMQSETALQIFNGMLVE 313

Query: 312 RIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDG 371
            IRPNQ TF   + AC+++  L  G+QVH  + +T+F+ +T + S+L+++Y+KCG +   
Sbjct: 314 GIRPNQVTFLGAVDACSNLAGLSEGQQVHQMICKTSFQFDTFIESTLMNLYAKCGEIRLA 373

Query: 372 RQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTH 431
           R+VFDL+  K+  + WN MI+A   HG   +AI L+  M     KP+ +T   +L+AC+H
Sbjct: 374 RKVFDLSKEKD-VISWNGMIAAYAHHGVGVEAIHLYEKMQEKGYKPNDVTYVGLLSACSH 432

Query: 432 SGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWN 491
           SGLV EGL  FE M  D  I    EH+ CLI+L ++AG        +  +  E  S +WN
Sbjct: 433 SGLVDEGLRIFEYMVKDRSIAVRDEHYTCLIDLCSRAGRLGDAKRLIHFLKVEPSSTVWN 492

Query: 492 ALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQ 551
           AL G C  HGN  +G      L++  P ++ T+ LL +IY++ GK +   K+R  +N+R 
Sbjct: 493 ALLGGCNSHGNESIGDLAARNLLEAEPNNAGTYTLLCNIYASAGKWKEAAKIRSEMNDRG 552

Query: 552 FKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQL 590
            KK+   SWIE+ENKVH F   D  H   D++ S+L+ +
Sbjct: 553 LKKQPGCSWIEVENKVHVFVSRDKSHSESDLINSLLQDI 591



 Score =  112 bits (281), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 109/427 (25%), Positives = 193/427 (45%), Gaps = 66/427 (15%)

Query: 219 NVVISSSIVDAYAKCGELSDARRLFDETDAR-DVLTWTTMVSGYAKLGDMESASKLFNEM 277
           +VV  +++V AYA+ G L DAR LFD  DAR +V+TWT ++SGYA+ G ++ A  LF  M
Sbjct: 65  DVVSWTALVAAYARQGMLHDARALFDRPDARRNVVTWTALLSGYARAGRVDEAEALFQRM 124

Query: 278 PEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGK 337
           PE+N VSW T++  YT  G  + A  LF  M +           S     A++V   +  
Sbjct: 125 PERNVVSWNTMLEAYTSAGRVRDAWTLFDGMPV-------RDAGSWNILLAALVRSGNMD 177

Query: 338 QVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKE----NSML------- 386
           +      R   R N +  ++++   ++ G +++ R +FD    +     N+M+       
Sbjct: 178 KARKLFDRMPER-NVMAWTTMVAGIARSGSVDEARALFDGMPERNVVSWNAMISGYARNH 236

Query: 387 -------------------WNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILN 427
                              WN MI+   Q    E+A  LF  M R +V    IT   ++N
Sbjct: 237 RIDEAHDLFMKMPTRDIASWNIMITGFIQDRDLERAQDLFDKMPRRNV----ITWTTMMN 292

Query: 428 ACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQ-AGCSD--QLMNQLEKMPYE 484
               S   +  L  F  M  + GI PNQ      ++  +  AG S+  Q+   + K  ++
Sbjct: 293 GYLQSMQSETALQIFNGMLVE-GIRPNQVTFLGAVDACSNLAGLSEGQQVHQMICKTSFQ 351

Query: 485 HDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVR 544
            D+++ + L  +    G I + RKV D  + +     + +G++++ Y+  G G     + 
Sbjct: 352 FDTFIESTLMNLYAKCGEIRLARKVFD--LSKEKDVISWNGMIAA-YAHHGVGVEAIHLY 408

Query: 545 QLINERQFKKEQAISWIEIEN------------KVHAFSVSDSLHPMRDVLYSVLEQL-- 590
           + + E+ +K    ++++ + +            ++  + V D    +RD  Y+ L  L  
Sbjct: 409 EKMQEKGYKPND-VTYVGLLSACSHSGLVDEGLRIFEYMVKDRSIAVRDEHYTCLIDLCS 467

Query: 591 -AGQMGE 596
            AG++G+
Sbjct: 468 RAGRLGD 474



 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 64/241 (26%), Positives = 125/241 (51%), Gaps = 10/241 (4%)

Query: 47  GIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVD 106
           GIR    T    +  C+    L  G++VH  +  T  +   TF+ + L+++Y KCG    
Sbjct: 314 GIRPNQVTFLGAVDACSNLAGLSEGQQVHQMICKTSFQF-DTFIESTLMNLYAKCGEIRL 372

Query: 107 ARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAER----DVVSWNTMIIGYAK 162
           ARKVFD    K++ S+N M++ YA+ G+   A +L++ M E+    + V++  ++   + 
Sbjct: 373 ARKVFDLSKEKDVISWNGMIAAYAHHGVGVEAIHLYEKMQEKGYKPNDVTYVGLLSACSH 432

Query: 163 SGAVEEGLKFYK-VLRRFSISCNEFSFAGILTICVKLEEL-KLTRQVHG-QVLVTGFLSN 219
           SG V+EGL+ ++ +++  SI+  +  +  ++ +C +   L    R +H  +V  +  + N
Sbjct: 433 SGLVDEGLRIFEYMVKDRSIAVRDEHYTCLIDLCSRAGRLGDAKRLIHFLKVEPSSTVWN 492

Query: 220 VVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPE 279
            ++           G+L+ AR L  E +  +  T+T + + YA  G  + A+K+ +EM +
Sbjct: 493 ALLGGCNSHGNESIGDLA-ARNLL-EAEPNNAGTYTLLCNIYASAGKWKEAAKIRSEMND 550

Query: 280 K 280
           +
Sbjct: 551 R 551



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 74/298 (24%), Positives = 126/298 (42%), Gaps = 34/298 (11%)

Query: 258 VSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQ 317
           V+  A  G +  A +LF+  P+++ VSWT L+A Y R G+   A  LF R      R N 
Sbjct: 42  VAELAAAGRVSDARRLFDRTPDRDVVSWTALVAAYARQGMLHDARALFDRP---DARRNV 98

Query: 318 HTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDL 377
            T+++ L   A    +   +     L +     N +  +++++ Y+  G + D   +FD 
Sbjct: 99  VTWTALLSGYARAGRVDEAEA----LFQRMPERNVVSWNTMLEAYTSAGRVRDAWTLFDG 154

Query: 378 TDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQE 437
              ++    WN +++AL + G  ++A +LF  M   +V    +    ++     SG V E
Sbjct: 155 MPVRDAGS-WNILLAALVRSGNMDKARKLFDRMPERNV----MAWTTMVAGIARSGSVDE 209

Query: 438 GLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVC 497
               F+ M     +  N      +I   A+    D+  +   KMP   D   WN +    
Sbjct: 210 ARALFDGMPERNVVSWN-----AMISGYARNHRIDEAHDLFMKMP-TRDIASWNIM---- 259

Query: 498 RIHGNI-DMGRKVVDQLIDQNPQ------SSATHGLLSSIYSALG----KGRLVEKVR 544
            I G I D   +    L D+ P+      ++  +G L S+ S        G LVE +R
Sbjct: 260 -ITGFIQDRDLERAQDLFDKMPRRNVITWTTMMNGYLQSMQSETALQIFNGMLVEGIR 316


>gi|449446125|ref|XP_004140822.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 809

 Score =  332 bits (851), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 182/583 (31%), Positives = 312/583 (53%), Gaps = 33/583 (5%)

Query: 54  TLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDK 113
           T   ++Q C+  +S    K+VH H+ L        ++ N LI+ +  C +  DA +VF++
Sbjct: 80  TYPLLIQACSIRRSEWEAKQVHNHV-LKLGFDSDVYVRNTLINCFSVCSNMTDACRVFNE 138

Query: 114 IPVKNLFSYNNMLSGYANLGMMKHARN-------------------------------LF 142
             V +  S+N++L+GY  +G ++ A++                               LF
Sbjct: 139 SSVLDSVSWNSILAGYIEIGNVEEAKHIYHQMPERSIIASNSMIVLFGMRGLVVEACKLF 198

Query: 143 DNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELK 202
           D M E+D+V+W+ +I  + ++   EE ++ +  + +  +  +E      L+ C  L  + 
Sbjct: 199 DEMLEKDMVTWSALIACFQQNEMYEEAIRTFVGMHKIGVMVDEVVAVSALSACANLLVVN 258

Query: 203 LTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYA 262
           + + +H   L  G  S + + ++++  Y+KCG++  AR+LFDE    D+++W +M+SGY 
Sbjct: 259 MGKLIHSLSLKIGTESYINLQNALIYMYSKCGDIMVARKLFDEAYLLDLISWNSMISGYL 318

Query: 263 KLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSS 322
           K   +++A  +F+ MPEK+ VSW+++I+GY +N L  + L LF  M +   +P++ T  S
Sbjct: 319 KCNLVDNAKAIFDSMPEKDVVSWSSMISGYAQNDLFDETLALFQEMQMSGFKPDETTLVS 378

Query: 323 CLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKE 382
            + ACA + +L+ GK VH ++ R     N I+ ++LIDMY KCGC+    +VF     K 
Sbjct: 379 VISACARLAALEQGKWVHAYIKRNGLTINVILGTTLIDMYMKCGCVETALEVFYGMIEKG 438

Query: 383 NSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYF 442
            S  WN +I  L  +G  E ++ +F +M +  V P++IT   +L AC H GLV EG  +F
Sbjct: 439 IST-WNALILGLAMNGLVESSLDMFSNMKKCHVTPNEITFMGVLGACRHMGLVDEGQHHF 497

Query: 443 ESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGN 502
            SM HD  I PN +H+ C+++LL +AG   +    L +MP   D   W AL G C+ HG+
Sbjct: 498 YSMIHDHKIQPNVKHYGCMVDLLGRAGKLQEAEELLNRMPMTPDVATWGALLGACKKHGD 557

Query: 503 IDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIE 562
            +MGR+V  +LI+  P     H LLS+IY++ GK   V ++R ++ + +  K    S IE
Sbjct: 558 SEMGRRVGRKLIELQPDHDGFHVLLSNIYASKGKWDDVLEIRGMMTKHRVLKIPGCSMIE 617

Query: 563 IENKVHAFSVSDSLHPMRDVLYSVLEQLAGQMGEDAPSLDADR 605
               +H F   D  HP  D +  +L ++A ++  +  + D + 
Sbjct: 618 ANGVIHEFLAGDKTHPDMDAIEDMLVEMAMKLKLEGYTPDINE 660



 Score =  155 bits (393), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 101/399 (25%), Positives = 187/399 (46%), Gaps = 45/399 (11%)

Query: 35  EAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVH-LHLKLTQRKTPTTFLSNH 93
           EAI +   + + G+ +        L  CA    + +GK +H L LK+         L N 
Sbjct: 224 EAIRTFVGMHKIGVMVDEVVAVSALSACANLLVVNMGKLIHSLSLKIGTESYIN--LQNA 281

Query: 94  LISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSW 153
           LI MY KCG  + ARK+FD+  + +L S+N+M+SGY    ++ +A+ +FD+M E+DVVSW
Sbjct: 282 LIYMYSKCGDIMVARKLFDEAYLLDLISWNSMISGYLKCNLVDNAKAIFDSMPEKDVVSW 341

Query: 154 NTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLV 213
           ++MI GYA++   +E L  ++ ++      +E +   +++ C +L  L+  + VH  +  
Sbjct: 342 SSMISGYAQNDLFDETLALFQEMQMSGFKPDETTLVSVISACARLAALEQGKWVHAYIKR 401

Query: 214 TGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKL 273
            G   NV++ ++++D Y KCG +  A  +F     + + TW  ++ G A           
Sbjct: 402 NGLTINVILGTTLIDMYMKCGCVETALEVFYGMIEKGISTWNALILGLA----------- 450

Query: 274 FNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSL 333
                                NGL + +L++F+ M    + PN+ TF   L AC  +  +
Sbjct: 451 --------------------MNGLVESSLDMFSNMKKCHVTPNEITFMGVLGACRHMGLV 490

Query: 334 KHGKQ-----VHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWN 388
             G+      +H   I+ N +        ++D+  + G L +  ++ +      +   W 
Sbjct: 491 DEGQHHFYSMIHDHKIQPNVKH----YGCMVDLLGRAGKLQEAEELLNRMPMTPDVATWG 546

Query: 389 TMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILN 427
            ++ A  +HG  E   R+   ++   ++PD     V+L+
Sbjct: 547 ALLGACKKHGDSEMGRRVGRKLIE--LQPDHDGFHVLLS 583



 Score =  155 bits (392), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 100/420 (23%), Positives = 195/420 (46%), Gaps = 63/420 (15%)

Query: 135 MKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTI 194
           + + R +F+ +   +   WN MI  Y ++ +       YK +    +  + +++  ++  
Sbjct: 28  IDYTRRIFNFIENTNCFMWNMMIRAYIQTNSPHFAFTLYKSMLSNYLGADNYTYPLLIQA 87

Query: 195 CVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTW 254
           C         +QVH  VL  GF S+V + +++++ ++ C  ++DA R+F+E+   D ++W
Sbjct: 88  CSIRRSEWEAKQVHNHVLKLGFDSDVYVRNTLINCFSVCSNMTDACRVFNESSVLDSVSW 147

Query: 255 TTMVSGYAKLGDMESAS-------------------------------KLFNEMPEKNPV 283
            ++++GY ++G++E A                                KLF+EM EK+ V
Sbjct: 148 NSILAGYIEIGNVEEAKHIYHQMPERSIIASNSMIVLFGMRGLVVEACKLFDEMLEKDMV 207

Query: 284 SWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFL 343
           +W+ LIA + +N + ++A+  F  M  + +  ++    S L ACA+++ +  GK +H   
Sbjct: 208 TWSALIACFQQNEMYEEAIRTFVGMHKIGVMVDEVVAVSALSACANLLVVNMGKLIHSLS 267

Query: 344 IRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFD---------------------LTDN-- 380
           ++    S   + ++LI MYSKCG +   R++FD                     L DN  
Sbjct: 268 LKIGTESYINLQNALIYMYSKCGDIMVARKLFDEAYLLDLISWNSMISGYLKCNLVDNAK 327

Query: 381 -------KENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSG 433
                  +++ + W++MIS   Q+   ++ + LF +M  S  KPD+ TL  +++AC    
Sbjct: 328 AIFDSMPEKDVVSWSSMISGYAQNDLFDETLALFQEMQMSGFKPDETTLVSVISACARLA 387

Query: 434 LVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNAL 493
            +++G  +  +     G+  N      LI++  + GC +  +     M  E     WNAL
Sbjct: 388 ALEQG-KWVHAYIKRNGLTINVILGTTLIDMYMKCGCVETALEVFYGM-IEKGISTWNAL 445



 Score = 69.3 bits (168), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 68/331 (20%), Positives = 145/331 (43%), Gaps = 54/331 (16%)

Query: 267 MESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCA 326
           ++   ++FN +   N   W  +I  Y +      A  L+  M+   +  + +T+   + A
Sbjct: 28  IDYTRRIFNFIENTNCFMWNMMIRAYIQTNSPHFAFTLYKSMLSNYLGADNYTYPLLIQA 87

Query: 327 CASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSML 386
           C+   S    KQVH  +++  F S+  V ++LI+ +S C  + D  +VF+   +  +S+ 
Sbjct: 88  CSIRRSEWEAKQVHNHVLKLGFDSDVYVRNTLINCFSVCSNMTDACRVFN-ESSVLDSVS 146

Query: 387 WNTMISALTQHGYDEQAIRLFHDMVRSSV---------------------------KPDK 419
           WN++++   + G  E+A  ++H M   S+                           + D 
Sbjct: 147 WNSILAGYIEIGNVEEAKHIYHQMPERSIIASNSMIVLFGMRGLVVEACKLFDEMLEKDM 206

Query: 420 ITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLE 479
           +T + ++     + + +E +  F  M H +G++ ++     ++ + A + C++ L+  + 
Sbjct: 207 VTWSALIACFQQNEMYEEAIRTFVGM-HKIGVMVDE-----VVAVSALSACANLLVVNMG 260

Query: 480 KMPYE------HDSY--LWNALHGVCRIHGNIDMGRKVVDQ--LIDQNPQSSATHGLLSS 529
           K+ +        +SY  L NAL  +    G+I + RK+ D+  L+D    +S   G L  
Sbjct: 261 KLIHSLSLKIGTESYINLQNALIYMYSKCGDIMVARKLFDEAYLLDLISWNSMISGYL-- 318

Query: 530 IYSALGKGRLVEKVRQLINERQFKKEQAISW 560
                 K  LV+  + + +     ++  +SW
Sbjct: 319 ------KCNLVDNAKAIFD--SMPEKDVVSW 341


>gi|359483031|ref|XP_002271968.2| PREDICTED: pentatricopeptide repeat-containing protein At4g02750
           [Vitis vinifera]
          Length = 788

 Score =  332 bits (851), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 173/534 (32%), Positives = 301/534 (56%), Gaps = 32/534 (5%)

Query: 92  NHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVV 151
           N ++  + + G    + + F+KIP  N  S+  ML G+A  G +  AR LFD M  R+VV
Sbjct: 206 NLMVDGFVEVGDLNSSWEFFEKIPNPNTVSWVTMLCGFARFGKIAEARRLFDQMPIRNVV 265

Query: 152 SWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQV 211
           +WN MI  Y ++  V+E +  +  +       N  S+  ++   V++ +L   RQ+  Q+
Sbjct: 266 AWNAMIAAYVQNCHVDEAISLFMEMPE----KNSISWTTVINGYVRMGKLDEARQLLNQM 321

Query: 212 ----------LVTGFLSN-----------------VVISSSIVDAYAKCGELSDARRLFD 244
                     +++G++ N                 VV  ++++  Y++CG + +A  LF 
Sbjct: 322 PYRNVAAQTAMISGYVQNKRMDDARQIFNQISIRDVVCWNTMIAGYSQCGRMDEALHLFK 381

Query: 245 ETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALEL 304
           +   +D+++W TMV+ YA++G M++A K+F EM EKN VSW +LI+G T+NG    AL+ 
Sbjct: 382 QMVKKDIVSWNTMVASYAQVGQMDAAIKIFEEMKEKNIVSWNSLISGLTQNGSYLDALKS 441

Query: 305 FTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSK 364
           F  M     +P+Q TF+  L +CA + +L+ GKQ+H  ++++ + ++  V ++LI MY+K
Sbjct: 442 FMLMGHEGQKPDQSTFACGLSSCAHLAALQVGKQLHQLVMKSGYATDLFVSNALITMYAK 501

Query: 365 CGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAV 424
           CG ++    +F   D+ +  + WN++I+A   +G   +A++LFH M    V PD++T   
Sbjct: 502 CGSISSAELLFKDIDHFD-VVSWNSLIAAYALNGNGREALKLFHKMEVEGVAPDEVTFVG 560

Query: 425 ILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYE 484
           IL+AC+H GL+ +GL  F+ M     I P  EH+AC+++LL +AG  ++    +  M   
Sbjct: 561 ILSACSHVGLIDQGLKLFKCMVQAYNIEPLAEHYACMVDLLGRAGRLEEAFQLVRGMKIN 620

Query: 485 HDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVR 544
            ++ +W AL G CRIHGN+++ +   ++L++  P  ++ + LLS++ +  G+   V +VR
Sbjct: 621 ANAGIWGALLGACRIHGNLELAKFAAEKLLEFEPHKTSNYVLLSNMQAEAGRWDEVARVR 680

Query: 545 QLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQMGEDA 598
           +L+ E+  +K+   SWIE++N+VHAF   D  HP    L  +L  L   M   A
Sbjct: 681 RLMKEKGAEKQPGWSWIELQNRVHAFLSEDPAHPRAVELCHILRSLTAHMRNTA 734



 Score =  145 bits (365), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 118/478 (24%), Positives = 210/478 (43%), Gaps = 75/478 (15%)

Query: 88  TFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAE 147
            F  N  I+   K G   +A KVF  +  KN  ++N+M+S +A  G +  AR LFD M +
Sbjct: 15  VFRHNLKITQLGKSGQIDEAIKVFQHMTHKNTVTHNSMISAFAKNGRISDARQLFDGMPQ 74

Query: 148 RDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQV 207
           R++VSWN+MI  Y  +  VEE  + +  +    +    +S+  ++T   +  EL   R +
Sbjct: 75  RNIVSWNSMIAAYLHNDRVEEARQLFDKMPTRDL----YSWTLMITCYTRNGELAKARNL 130

Query: 208 HGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDM 267
                +  +  N V  +++V  YAK  +  +ARRLFD   A+D+++W +M++GY + G+M
Sbjct: 131 FN---LLPYKWNPVCCNAMVAGYAKNRQFDEARRLFDAMPAKDLVSWNSMLTGYTRNGEM 187

Query: 268 ESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCAC 327
               + F EM E++ VSW  ++ G+   G    + E F ++      PN +T S     C
Sbjct: 188 RLGLQFFEEMAERDVVSWNLMVDGFVEVGDLNSSWEFFEKI------PNPNTVSWVTMLC 241

Query: 328 ASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLW 387
                                             +++ G + + R++FD    + N + W
Sbjct: 242 G---------------------------------FARFGKIAEARRLFDQMPIR-NVVAW 267

Query: 388 NTMISALTQHGYDEQAIRLFHDMVRSSVKPDK--ITLAVILNACTHSGLVQEGLTYFESM 445
           N MI+A  Q+ + ++AI LF +M      P+K  I+   ++N     G + E       M
Sbjct: 268 NAMIAAYVQNCHVDEAISLFMEM------PEKNSISWTTVINGYVRMGKLDEARQLLNQM 321

Query: 446 THDLGIIPNQEHHACLIELLAQAGCSD---QLMNQLEKMPYEHDSYLWNALHGVCRIHGN 502
            +      N      +I    Q    D   Q+ NQ+       D   WN +       G 
Sbjct: 322 PYR-----NVAAQTAMISGYVQNKRMDDARQIFNQISI----RDVVCWNTMIAGYSQCGR 372

Query: 503 IDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISW 560
           +D    +  Q++ ++  S  T   + + Y+ +G+     K+ +     + K++  +SW
Sbjct: 373 MDEALHLFKQMVKKDIVSWNT---MVASYAQVGQMDAAIKIFE-----EMKEKNIVSW 422



 Score =  138 bits (348), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 86/368 (23%), Positives = 172/368 (46%), Gaps = 63/368 (17%)

Query: 68  LKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLS 127
           +++GK       L Q           +IS Y +     DAR++F++I ++++  +N M++
Sbjct: 306 VRMGKLDEARQLLNQMPYRNVAAQTAMISGYVQNKRMDDARQIFNQISIRDVVCWNTMIA 365

Query: 128 GYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSI------ 181
           GY+  G M  A +LF  M ++D+VSWNTM+  YA+ G ++  +K ++ ++  +I      
Sbjct: 366 GYSQCGRMDEALHLFKQMVKKDIVSWNTMVASYAQVGQMDAAIKIFEEMKEKNIVSWNSL 425

Query: 182 -------------------------SCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGF 216
                                      ++ +FA  L+ C  L  L++ +Q+H  V+ +G+
Sbjct: 426 ISGLTQNGSYLDALKSFMLMGHEGQKPDQSTFACGLSSCAHLAALQVGKQLHQLVMKSGY 485

Query: 217 LSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNE 276
            +++ +S++++  YAKCG +S A  LF + D  DV++W ++++ YA  G+          
Sbjct: 486 ATDLFVSNALITMYAKCGSISSAELLFKDIDHFDVVSWNSLIAAYALNGN---------- 535

Query: 277 MPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHG 336
                                G++AL+LF +M +  + P++ TF   L AC+ +  +  G
Sbjct: 536 ---------------------GREALKLFHKMEVEGVAPDEVTFVGILSACSHVGLIDQG 574

Query: 337 KQVHGFLIRT-NFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALT 395
            ++   +++  N        + ++D+  + G L +  Q+        N+ +W  ++ A  
Sbjct: 575 LKLFKCMVQAYNIEPLAEHYACMVDLLGRAGRLEEAFQLVRGMKINANAGIWGALLGACR 634

Query: 396 QHGYDEQA 403
            HG  E A
Sbjct: 635 IHGNLELA 642


>gi|242062548|ref|XP_002452563.1| hypothetical protein SORBIDRAFT_04g028180 [Sorghum bicolor]
 gi|241932394|gb|EES05539.1| hypothetical protein SORBIDRAFT_04g028180 [Sorghum bicolor]
          Length = 745

 Score =  332 bits (851), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 181/592 (30%), Positives = 312/592 (52%), Gaps = 34/592 (5%)

Query: 11  NRKNLPNNCLIQSFLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKL 70
            R  +  N +I  F    S  Q      +L L A   +R    T++ ++   +      L
Sbjct: 100 QRDIVSYNAVIAGFSGGGSHAQAVRVYLAL-LQADSSVRPSRITMSTMVMAASALGDRAL 158

Query: 71  GKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYA 130
           GK+ H  + L        F+ + L+ MY K     DA++ FD++  KN+  YN M++G  
Sbjct: 159 GKQFHCQI-LRLGFGANAFVGSPLVDMYAKMSLVGDAKRAFDEVDSKNVVMYNTMITGLL 217

Query: 131 NLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAG 190
              M++ AR LF+ M +RD ++W TM+ G+ ++G   E L+ ++ +R   I+ ++++F  
Sbjct: 218 RCKMVEEARRLFEVMTDRDSITWTTMVTGFTQNGLESEALEIFRRMRFQGIAIDQYTFGS 277

Query: 191 ILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARD 250
           ILT C  L  L+  +Q+H  ++ T +  NV + S++VD Y+KC  +              
Sbjct: 278 ILTACGALSALEQGKQIHAYIIRTRYDDNVFVGSALVDMYSKCRSI-------------- 323

Query: 251 VLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMI 310
                       KL     A  +F  M  KN +SWT LI GY +NG  ++A+ +F+ M  
Sbjct: 324 ------------KL-----AETVFRRMTCKNIISWTALIVGYGQNGCSEEAVRVFSEMQR 366

Query: 311 LRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLND 370
             I P+ +T  S + +CA++ SL+ G Q H   + +       V ++L+ +Y KCG + D
Sbjct: 367 DGIDPDDYTLGSVISSCANLASLEEGAQFHCLALVSGLMHYITVSNALVTLYGKCGSIED 426

Query: 371 GRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACT 430
             ++FD   +  + + W  ++S   Q G  ++ I LF  M+   VKPD +T   +L+AC+
Sbjct: 427 AHRLFDEM-SFHDQVSWTALVSGYAQFGRAKETIDLFEKMLAKGVKPDGVTFIGVLSACS 485

Query: 431 HSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLW 490
            +G V++G +YF SM  D GI+P  +H+ C+I+L +++G   +    +++MP   D+  W
Sbjct: 486 RAGFVEKGRSYFHSMQKDHGIVPIDDHYTCMIDLYSRSGKLKEAEEFIKQMPMHPDAIGW 545

Query: 491 NALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINER 550
             L   CR+ G++++G+   + L++ +PQ+ A++ LL S+++A G+   V ++R+ + +R
Sbjct: 546 GTLLSACRLRGDMEIGKWAAENLLEIDPQNPASYVLLCSMHAAKGQWNEVAQLRRGMRDR 605

Query: 551 QFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQMGEDAPSLD 602
           Q KKE   SWI+ +NKVH FS  D  HP    +Y  LE L  +M E+    D
Sbjct: 606 QVKKEPGCSWIKYKNKVHIFSADDQSHPCSKGIYEKLEWLNSKMLEEGYKPD 657



 Score =  276 bits (705), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 153/475 (32%), Positives = 256/475 (53%), Gaps = 21/475 (4%)

Query: 86  PTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNM 145
           P T+L NHL++ Y K G    AR+VFD +P  NLF+YN +LS  A+  ++     LF +M
Sbjct: 39  PPTYLLNHLLTAYGKAGRHARARRVFDAMPHPNLFTYNALLSTLAHARLLSDMEALFASM 98

Query: 146 AERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRF--SISCNEFSFAGILTICVKLEELKL 203
            +RD+VS+N +I G++  G+  + ++ Y  L +   S+  +  + + ++     L +  L
Sbjct: 99  TQRDIVSYNAVIAGFSGGGSHAQAVRVYLALLQADSSVRPSRITMSTMVMAASALGDRAL 158

Query: 204 TRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAK 263
            +Q H Q+L  GF +N  + S +VD YAK   + DA+R FDE D+++V+ + TM++G  +
Sbjct: 159 GKQFHCQILRLGFGANAFVGSPLVDMYAKMSLVGDAKRAFDEVDSKNVVMYNTMITGLLR 218

Query: 264 LGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSC 323
              +E A +LF  M +++ ++WTT++ G+T+NGL  +ALE+F RM    I  +Q+TF S 
Sbjct: 219 CKMVEEARRLFEVMTDRDSITWTTMVTGFTQNGLESEALEIFRRMRFQGIAIDQYTFGSI 278

Query: 324 LCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKEN 383
           L AC ++ +L+ GKQ+H ++IRT +  N  V S+L+DMYSKC  +     VF     K N
Sbjct: 279 LTACGALSALEQGKQIHAYIIRTRYDDNVFVGSALVDMYSKCRSIKLAETVFRRMTCK-N 337

Query: 384 SMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFE 443
            + W  +I    Q+G  E+A+R+F +M R  + PD  TL  ++++C +   ++EG  +  
Sbjct: 338 IISWTALIVGYGQNGCSEEAVRVFSEMQRDGIDPDDYTLGSVISSCANLASLEEGAQF-- 395

Query: 444 SMTHDLGIIPNQEHHA----CLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRI 499
              H L ++    H+      L+ L  + G  +      ++M + HD   W AL     +
Sbjct: 396 ---HCLALVSGLMHYITVSNALVTLYGKCGSIEDAHRLFDEMSF-HDQVSWTAL-----V 446

Query: 500 HGNIDMGR--KVVDQLIDQNPQSSATHGL-LSSIYSALGKGRLVEKVRQLINERQ 551
            G    GR  + +D       +     G+    + SA  +   VEK R   +  Q
Sbjct: 447 SGYAQFGRAKETIDLFEKMLAKGVKPDGVTFIGVLSACSRAGFVEKGRSYFHSMQ 501


>gi|357138408|ref|XP_003570784.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Brachypodium distachyon]
          Length = 750

 Score =  332 bits (851), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 175/558 (31%), Positives = 298/558 (53%), Gaps = 33/558 (5%)

Query: 45  QRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSD 104
           + G+R    T++ ++   +      LG++VH  + L        F  + L+ MY K G  
Sbjct: 138 EAGVRPSRITMSGVVMVASALGDRALGRQVHCQI-LRLGFGAYAFTGSPLVDMYAKVGPI 196

Query: 105 VDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSG 164
            DAR+VFD++  KN+   N M++G     M+  AR LF+ + ERD ++W TM+ G  ++G
Sbjct: 197 GDARRVFDEMEGKNVVMCNTMITGLLRCKMVAEARALFEAIEERDSITWTTMVTGLTQNG 256

Query: 165 AVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISS 224
              E L  ++ +R   +  ++++F  ILT C  L  L+  +Q+H  +  T +  NV + S
Sbjct: 257 LESEALDVFRRMRAEGVGIDQYTFGSILTACGALAALEEGKQIHAYITRTCYEDNVFVGS 316

Query: 225 SIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVS 284
           ++VD Y+KC  +    RL                           A  +F  M  KN +S
Sbjct: 317 ALVDMYSKCRSV----RL---------------------------AEAVFRRMMWKNIIS 345

Query: 285 WTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLI 344
           WT +I GY +NG G++A+ +F+ M    I+P+  T  S + +CA++ SL+ G Q H   +
Sbjct: 346 WTAMIVGYGQNGCGEEAVRVFSEMQRDGIKPDDFTLGSVISSCANLASLEEGAQFHCLAL 405

Query: 345 RTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAI 404
            +  R    V ++L+ +Y KCG + D  ++FD   +  + + W  ++    Q G  ++ I
Sbjct: 406 VSGLRPYVTVSNALVTLYGKCGSIEDAHRLFDEM-SFHDQVSWTALVMGYAQFGKAKETI 464

Query: 405 RLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIEL 464
            LF  M+   VKPD +T   +L+AC+ SGLV +G +YF SM  D  I+P  +H+ C+I+L
Sbjct: 465 DLFEKMLSKGVKPDGVTFIGVLSACSRSGLVDKGRSYFHSMQQDHDIVPLDDHYTCMIDL 524

Query: 465 LAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATH 524
            +++G   Q    +++MP   D++ W  L   CR+ G++++G+   + L+  +PQ+ A++
Sbjct: 525 YSRSGWLKQAEEFIKQMPRCPDAFGWATLLSACRLRGDMEIGKWAAENLLKLDPQNPASY 584

Query: 525 GLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLY 584
            LL S++++ G+   V K+R+ + +RQ KKE   SWI+ +NKVH FS  D  HP    +Y
Sbjct: 585 VLLCSMHASKGEWNDVAKLRRGMRDRQVKKEPGCSWIKYKNKVHIFSADDQSHPFSRTIY 644

Query: 585 SVLEQLAGQMGEDAPSLD 602
             L+ L  +M E+    D
Sbjct: 645 EKLQWLNSKMVEEGYKPD 662



 Score =  254 bits (648), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 154/488 (31%), Positives = 255/488 (52%), Gaps = 15/488 (3%)

Query: 70  LGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGY 129
           L   VH  +  T      T+L N L++ Y   G    AR+VFD +P +NL + N++LS  
Sbjct: 28  LTAAVHALILRTLPHPSPTYLLNTLLTAYASSGLLPHARRVFDAMPGRNLVTGNSLLSAL 87

Query: 130 ANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRR--FSISCNEFS 187
           A  G+++    LF ++ +RD VS+N ++ G++++GA       Y  L R    +  +  +
Sbjct: 88  ARAGLVRDMERLFTSLPQRDAVSYNALLAGFSRAGAHARAAGAYVALLRDEAGVRPSRIT 147

Query: 188 FAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETD 247
            +G++ +   L +  L RQVH Q+L  GF +     S +VD YAK G + DARR+FDE +
Sbjct: 148 MSGVVMVASALGDRALGRQVHCQILRLGFGAYAFTGSPLVDMYAKVGPIGDARRVFDEME 207

Query: 248 ARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTR 307
            ++V+   TM++G  +   +  A  LF  + E++ ++WTT++ G T+NGL  +AL++F R
Sbjct: 208 GKNVVMCNTMITGLLRCKMVAEARALFEAIEERDSITWTTMVTGLTQNGLESEALDVFRR 267

Query: 308 MMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGC 367
           M    +  +Q+TF S L AC ++ +L+ GKQ+H ++ RT +  N  V S+L+DMYSKC  
Sbjct: 268 MRAEGVGIDQYTFGSILTACGALAALEEGKQIHAYITRTCYEDNVFVGSALVDMYSKCRS 327

Query: 368 LNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILN 427
           +     VF     K N + W  MI    Q+G  E+A+R+F +M R  +KPD  TL  +++
Sbjct: 328 VRLAEAVFRRMMWK-NIISWTAMIVGYGQNGCGEEAVRVFSEMQRDGIKPDDFTLGSVIS 386

Query: 428 ACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDS 487
           +C +   ++EG   F  +    G+ P       L+ L  + G  +      ++M + HD 
Sbjct: 387 SCANLASLEEG-AQFHCLALVSGLRPYVTVSNALVTLYGKCGSIEDAHRLFDEMSF-HDQ 444

Query: 488 YLWNAL----HGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKV 543
             W AL        +    ID+  K++ + +   P      G+L    SA  +  LV+K 
Sbjct: 445 VSWTALVMGYAQFGKAKETIDLFEKMLSKGV--KPDGVTFIGVL----SACSRSGLVDKG 498

Query: 544 RQLINERQ 551
           R   +  Q
Sbjct: 499 RSYFHSMQ 506



 Score =  124 bits (311), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 89/373 (23%), Positives = 154/373 (41%), Gaps = 64/373 (17%)

Query: 27  LISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTP 86
           L   G  SEA+     +   G+ +   T   IL  C    +L+ GK++H ++  T  +  
Sbjct: 252 LTQNGLESEALDVFRRMRAEGVGIDQYTFGSILTACGALAALEEGKQIHAYITRTCYED- 310

Query: 87  TTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMA 146
             F+ + L+ MY KC S   A  VF ++  KN+ S+  M+ G                  
Sbjct: 311 NVFVGSALVDMYSKCRSVRLAEAVFRRMMWKNIISWTAMIVG------------------ 352

Query: 147 ERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQ 206
                        Y ++G  EE ++ +  ++R  I  ++F+   +++ C  L  L+   Q
Sbjct: 353 -------------YGQNGCGEEAVRVFSEMQRDGIKPDDFTLGSVISSCANLASLEEGAQ 399

Query: 207 VHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGD 266
            H   LV+G    V +S+++V  Y KCG + DA RLFDE    D ++WT +V GYA+ G 
Sbjct: 400 FHCLALVSGLRPYVTVSNALVTLYGKCGSIEDAHRLFDEMSFHDQVSWTALVMGYAQFGK 459

Query: 267 MESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCA 326
                                           ++ ++LF +M+   ++P+  TF   L A
Sbjct: 460 -------------------------------AKETIDLFEKMLSKGVKPDGVTFIGVLSA 488

Query: 327 CASIVSLKHGKQ-VHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSM 385
           C+    +  G+   H      +        + +ID+YS+ G L    +         ++ 
Sbjct: 489 CSRSGLVDKGRSYFHSMQQDHDIVPLDDHYTCMIDLYSRSGWLKQAEEFIKQMPRCPDAF 548

Query: 386 LWNTMISALTQHG 398
            W T++SA    G
Sbjct: 549 GWATLLSACRLRG 561


>gi|224118338|ref|XP_002317794.1| predicted protein [Populus trichocarpa]
 gi|222858467|gb|EEE96014.1| predicted protein [Populus trichocarpa]
          Length = 852

 Score =  332 bits (851), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 184/578 (31%), Positives = 311/578 (53%), Gaps = 22/578 (3%)

Query: 31  GQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFL 90
           G   EAI  L  +   G+   A+TLA +L  CA  + L LGK++H ++      T   F+
Sbjct: 276 GYDEEAIEMLFRMQVEGLVPNAQTLAGVLPACARLQRLDLGKQLHGYI------TRHDFI 329

Query: 91  SN-----HLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNM 145
           SN      L+ +Y +CG    A K+F K  VKN+ S N M+ GY   G +  A+ LFD M
Sbjct: 330 SNPVVVNALVDVYRRCGDMGGAAKIFLKFSVKNVLSCNTMIVGYCESGDVSKAKELFDCM 389

Query: 146 ----AERDVVSWNTMIIGYAKSGAVEEGLK-FYKVLRRFSISCNEFSFAGILTICVKLEE 200
                ER ++SWN++I GY ++   +E    F  +L    I  + F+   +LT C     
Sbjct: 390 DVLGIERGLISWNSIISGYVRNFMFDEAFSMFQNMLMEEGIEPDSFTLGSVLTACADTIS 449

Query: 201 LKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSG 260
           L+  +++H Q +V G  S+  +  ++V+ Y+KC +L+ A+  FDE   +DV TW  ++SG
Sbjct: 450 LRQGKEIHAQAIVKGLQSDTFVGGALVEMYSKCQDLTAAQVAFDEVMEKDVPTWNALISG 509

Query: 261 YAKLGDMESASKLFNEMP----EKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPN 316
           Y +   +E    L  +M       N  +W +++AG   N      ++LF+ M I ++RP+
Sbjct: 510 YTRSNQIERIQYLLEKMKGDGYHPNIYTWNSILAGLVENRQLDLTMQLFSEMQISKLRPD 569

Query: 317 QHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFD 376
            +T    L AC+ + +L+ GKQ H   I+  + ++  + ++L+DMY+KCG L   +  +D
Sbjct: 570 IYTVGIILPACSRLATLERGKQAHAHSIKCGYDTDVHIGAALVDMYAKCGSLKYAQLAYD 629

Query: 377 LTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQ 436
              N  N +  N M++A   HG+ E+ I LF  M+     PD +T   +L++C H G V+
Sbjct: 630 RISNP-NLVSHNAMLTACAMHGHGEEGISLFQTMLALGFIPDHVTFLSVLSSCVHVGSVE 688

Query: 437 EGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGV 496
            G  +F+ M +   + P  +H+  +++LL+++G   +    ++KMP E DS LW AL G 
Sbjct: 689 TGCEFFDLMGY-YNVKPTLKHYTSMVDLLSRSGQLHEAYELIKKMPVECDSVLWGALLGG 747

Query: 497 CRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQ 556
           C  HGNI++G    ++LI+  P +S  + LL+++++   +   + +VR ++ +R   K  
Sbjct: 748 CVTHGNIELGEIAAERLIELEPNNSGNYVLLANLHAYARRWTDLARVRGMMKDRGMHKSP 807

Query: 557 AISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQM 594
             SWIE +N++H+F   D  H   + +Y+ L+ LA  M
Sbjct: 808 GCSWIEDKNEIHSFLACDRSHKRAEEIYATLDYLALHM 845



 Score =  194 bits (492), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 132/464 (28%), Positives = 219/464 (47%), Gaps = 49/464 (10%)

Query: 2   PSNFSPRGINR-KNLPNNCLIQSFLSLISKGQL-----SEAISSLDLLAQRGIRLPAETL 55
           P    P  +N   N+P+N    SF  L    Q       +  S+  LL  +   L     
Sbjct: 8   PIACPPSPLNHVPNIPHNLTALSFQKLKQAHQPVNISQQKNRSNFSLLDNK--PLNTSKY 65

Query: 56  AFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIP 115
           A +L  C   K  KLGK+VH H                      K G D D         
Sbjct: 66  ASVLDSC---KCPKLGKQVHAHT--------------------IKTGFDADG-------- 94

Query: 116 VKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKV 175
               F    +L  YA  G++K A  LF+ M  R++ SW  ++  Y   G  EE    ++V
Sbjct: 95  ----FIDTKLLQMYARCGLLKDADFLFETMPMRNLHSWKAILSVYLDHGLFEEAFLLFQV 150

Query: 176 LRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGE 235
           L+   +  + F F  +   C  L  ++L RQ+HG V+   F  N+ +S++++D Y KCG 
Sbjct: 151 LQFDGVELDFFVFPLVFKACSGLGSVELGRQLHGLVIKFRFCLNIYVSNALIDMYGKCGS 210

Query: 236 LSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPE-----KNPVSWTTLIA 290
           L DA+++  +   RD +TW ++++  A  G +  A +   +M        N VSW+ +I 
Sbjct: 211 LDDAKKVLVKMPERDSVTWNSVITACAANGMVYEALEFLEKMKSLDYSMPNVVSWSAVIG 270

Query: 291 GYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRS 350
           G+ +NG  ++A+E+  RM +  + PN  T +  L ACA +  L  GKQ+HG++ R +F S
Sbjct: 271 GFAQNGYDEEAIEMLFRMQVEGLVPNAQTLAGVLPACARLQRLDLGKQLHGYITRHDFIS 330

Query: 351 NTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDM 410
           N +V+++L+D+Y +CG +    ++F L  + +N +  NTMI    + G   +A  LF  M
Sbjct: 331 NPVVVNALVDVYRRCGDMGGAAKIF-LKFSVKNVLSCNTMIVGYCESGDVSKAKELFDCM 389

Query: 411 VRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPN 454
               ++   I+   I++    + +  E  + F++M  + GI P+
Sbjct: 390 DVLGIERGLISWNSIISGYVRNFMFDEAFSMFQNMLMEEGIEPD 433



 Score = 76.6 bits (187), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 54/188 (28%), Positives = 84/188 (44%), Gaps = 6/188 (3%)

Query: 316 NQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVF 375
           N   ++S L +C      K GKQVH   I+T F ++  + + L+ MY++CG L D   +F
Sbjct: 61  NTSKYASVLDSCKCP---KLGKQVHAHTIKTGFDADGFIDTKLLQMYARCGLLKDADFLF 117

Query: 376 DLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLV 435
           + T    N   W  ++S    HG  E+A  LF  +    V+ D     ++  AC+  G V
Sbjct: 118 E-TMPMRNLHSWKAILSVYLDHGLFEEAFLLFQVLQFDGVELDFFVFPLVFKACSGLGSV 176

Query: 436 QEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHG 495
           + G      +        N      LI++  + G  D     L KMP E DS  WN++  
Sbjct: 177 ELG-RQLHGLVIKFRFCLNIYVSNALIDMYGKCGSLDDAKKVLVKMP-ERDSVTWNSVIT 234

Query: 496 VCRIHGNI 503
            C  +G +
Sbjct: 235 ACAANGMV 242



 Score = 56.2 bits (134), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 62/273 (22%), Positives = 109/273 (39%), Gaps = 42/273 (15%)

Query: 16  PNNCLIQSFLS-LISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRV 74
           PN     S L+ L+   QL   +     +    +R    T+  IL  C+   +L+ GK+ 
Sbjct: 533 PNIYTWNSILAGLVENRQLDLTMQLFSEMQISKLRPDIYTVGIILPACSRLATLERGKQA 592

Query: 75  HLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGM 134
           H H       T    +   L+ MY KCGS   A+  +D+I   NL S+N ML+  A  G 
Sbjct: 593 HAHSIKCGYDT-DVHIGAALVDMYAKCGSLKYAQLAYDRISNPNLVSHNAMLTACAMHGH 651

Query: 135 MKHARNLFDNMAE----RDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAG 190
            +   +LF  M       D V++ +++      G+VE G +F+ ++  +++         
Sbjct: 652 GEEGISLFQTMLALGFIPDHVTFLSVLSSCVHVGSVETGCEFFDLMGYYNV--------- 702

Query: 191 ILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDAR- 249
                      K T + +               +S+VD  ++ G+L +A  L  +     
Sbjct: 703 -----------KPTLKHY---------------TSMVDLLSRSGQLHEAYELIKKMPVEC 736

Query: 250 DVLTWTTMVSGYAKLGDMESASKLFNEMPEKNP 282
           D + W  ++ G    G++E        + E  P
Sbjct: 737 DSVLWGALLGGCVTHGNIELGEIAAERLIELEP 769


>gi|356528130|ref|XP_003532658.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g41080-like [Glycine max]
          Length = 674

 Score =  332 bits (851), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 188/573 (32%), Positives = 313/573 (54%), Gaps = 37/573 (6%)

Query: 22  QSFLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLT 81
           + F +L SKG + EA  S   L++  I       + +LQ C   KS+ LGK++H  L  T
Sbjct: 43  EQFATLCSKGHIREAFESF--LSE--IWAEPRLFSNLLQACIPLKSVSLGKQLH-SLIFT 97

Query: 82  QRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNL 141
              +   F+SNHL+++Y K G    A  +FD++P +N+ S N M+  Y  +G ++ A+NL
Sbjct: 98  SGCSSDKFISNHLLNLYSKFGELQAAVALFDRMPRRNIMSCNIMIKAYLGMGNLESAKNL 157

Query: 142 FDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEEL 201
           FD M +R+V +WN M+ G  K    EE L  +  +   S   +E+S   +L  C  L  L
Sbjct: 158 FDEMPDRNVATWNAMVTGLTKFEMNEEALLLFSRMNELSFMPDEYSLGSVLRGCAHLGAL 217

Query: 202 KLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGY 261
              +QVH  V+  GF  N+V+  S+   Y K G + D  R         V+ W       
Sbjct: 218 LAGQQVHAYVMKCGFECNLVVGCSLAHMYMKAGSMHDGER---------VINW------- 261

Query: 262 AKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFS 321
                          MP+ + V+W TL++G  + G  +  L+ +  M +   RP++ TF 
Sbjct: 262 ---------------MPDCSLVAWNTLMSGKAQKGYFEGVLDQYCMMKMAGFRPDKITFV 306

Query: 322 SCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNK 381
           S + +C+ +  L  GKQ+H   ++    S   V+SSL+ MYS+CGCL D  + F L   +
Sbjct: 307 SVISSCSELAILCQGKQIHAEAVKAGASSEVSVVSSLVSMYSRCGCLQDSIKTF-LECKE 365

Query: 382 ENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTY 441
            + +LW++MI+A   HG  E+AI+LF++M + ++  ++IT   +L AC+H GL  +GL  
Sbjct: 366 RDVVLWSSMIAAYGFHGQGEEAIKLFNEMEQENLPGNEITFLSLLYACSHCGLKDKGLGL 425

Query: 442 FESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHG 501
           F+ M    G+    +H+ CL++LL ++GC ++    +  MP + D+ +W  L   C+IH 
Sbjct: 426 FDMMVKKYGLKARLQHYTCLVDLLGRSGCLEEAEAMIRSMPVKADAIIWKTLLSACKIHK 485

Query: 502 NIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWI 561
           N ++ R+V D+++  +PQ SA++ LL++IYS+  + + V +VR+ + ++  KKE  ISW+
Sbjct: 486 NAEIARRVADEVLRIDPQDSASYVLLANIYSSANRWQNVSEVRRAMKDKMVKKEPGISWV 545

Query: 562 EIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQM 594
           E++N+VH F + D  HP    +   LE+L  ++
Sbjct: 546 EVKNQVHQFHMGDECHPKHVEINQYLEELTSEI 578


>gi|449467070|ref|XP_004151248.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
          Length = 617

 Score =  332 bits (850), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 163/458 (35%), Positives = 267/458 (58%), Gaps = 1/458 (0%)

Query: 137 HARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICV 196
           +A+ +F  +   +V  WNT +  +A+  +  + +  +  LR F IS + ++ + +L  C 
Sbjct: 65  YAKLIFQLLDASEVTHWNTCLRSFAEGDSPADAISLFYRLREFDISPDHYTCSFVLKACS 124

Query: 197 KLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTT 256
           +L +++  + VHG V   G  SN+ + + IV  YA CGE+  AR++FD+   RDV+TW  
Sbjct: 125 RLLDVRNGKIVHGYVEKLGLQSNMFLQNMIVHLYALCGEIGVARKVFDKMPQRDVITWNI 184

Query: 257 MVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPN 316
           M++   K+GD E A KLF EMPE+N  SWT++I GY + G  ++A++LF  M    + PN
Sbjct: 185 MIARLVKMGDAEGAYKLFAEMPERNVRSWTSMIGGYAQCGKSKEAIDLFLEMEDAGLLPN 244

Query: 317 QHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFD 376
           + T  + L ACA + +L  G+++H F  R+ +  N  V ++LIDMY KCGCL D  ++FD
Sbjct: 245 EVTVVAVLVACADMGNLVLGRRIHDFSNRSGYEKNIRVCNTLIDMYVKCGCLEDACRIFD 304

Query: 377 LTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQ 436
             + +   + W+ MI+ L  HG  E A+ LF+ M+ + VKP+ +T   IL+AC+H G+V+
Sbjct: 305 NMEER-TVVSWSAMIAGLAAHGRAEDALALFNKMINTGVKPNAVTFIGILHACSHMGMVE 363

Query: 437 EGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGV 496
           +G  YF SMT D GI+P  EH+ C+++L ++AG   +    +  MP   +  +W AL G 
Sbjct: 364 KGRKYFASMTRDYGIVPRIEHYGCMVDLFSRAGLLQEAHEFIMNMPIAPNGVVWGALLGG 423

Query: 497 CRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQ 556
           C++H NI +  +    L   +P +   + +LS+IY+  G+   V +VR+L+ +R  KK  
Sbjct: 424 CKVHKNIKLAEEATRHLSKLDPLNDGYYVVLSNIYAEAGRWEDVARVRKLMRDRGVKKTP 483

Query: 557 AISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQM 594
             S I +E  V+ F   D  HP  + ++   E+L  +M
Sbjct: 484 GWSSIMVEGVVYNFVAGDDTHPQTEEIFQTWEKLLQRM 521



 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 102/388 (26%), Positives = 182/388 (46%), Gaps = 37/388 (9%)

Query: 34  SEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNH 93
           ++AIS    L +  I     T +F+L+ C+    ++ GK VH +++    ++   FL N 
Sbjct: 95  ADAISLFYRLREFDISPDHYTCSFVLKACSRLLDVRNGKIVHGYVEKLGLQS-NMFLQNM 153

Query: 94  LISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSW 153
           ++ +Y  CG    ARKVFDK+P +++ ++N M++    +G  + A  LF  M ER+V SW
Sbjct: 154 IVHLYALCGEIGVARKVFDKMPQRDVITWNIMIARLVKMGDAEGAYKLFAEMPERNVRSW 213

Query: 154 NTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLV 213
            +MI GYA+ G  +E +  +  +    +  NE +   +L  C  +  L L R++H     
Sbjct: 214 TSMIGGYAQCGKSKEAIDLFLEMEDAGLLPNEVTVVAVLVACADMGNLVLGRRIHDFSNR 273

Query: 214 TGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKL 273
           +G+  N+ + ++++D Y KCG L DA R+FD  + R V++W+ M++G A  G  E A  L
Sbjct: 274 SGYEKNIRVCNTLIDMYVKCGCLEDACRIFDNMEERTVVSWSAMIAGLAAHGRAEDALAL 333

Query: 274 FNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSL 333
           FN+M                                   ++PN  TF   L AC+ +  +
Sbjct: 334 FNKMINTG-------------------------------VKPNAVTFIGILHACSHMGMV 362

Query: 334 KHGKQVHGFLIRTNFRSNTIV-MSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMIS 392
           + G++    + R       I     ++D++S+ G L +  +         N ++W  ++ 
Sbjct: 363 EKGRKYFASMTRDYGIVPRIEHYGCMVDLFSRAGLLQEAHEFIMNMPIAPNGVVWGALLG 422

Query: 393 ALTQHGYDEQAIRLFHDMVRSSVKPDKI 420
               H    + I+L  +  R   K D +
Sbjct: 423 GCKVH----KNIKLAEEATRHLSKLDPL 446



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 74/293 (25%), Positives = 126/293 (43%), Gaps = 37/293 (12%)

Query: 21  IQSFLSLISK----GQLSEAISSLDLLAQRGIRLPAE-TLAFILQQCAESKSLKLGKRVH 75
           ++S+ S+I      G+  EAI     +   G+ LP E T+  +L  CA+  +L LG+R+H
Sbjct: 210 VRSWTSMIGGYAQCGKSKEAIDLFLEMEDAGL-LPNEVTVVAVLVACADMGNLVLGRRIH 268

Query: 76  LHLKLTQRK--TPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLG 133
                + R        + N LI MY KCG   DA ++FD +  + + S++ M++G A  G
Sbjct: 269 ---DFSNRSGYEKNIRVCNTLIDMYVKCGCLEDACRIFDNMEERTVVSWSAMIAGLAAHG 325

Query: 134 MMKHARNLFDNMAERDVVSWNTMIIGYAKS----GAVEEGLKFYKVLRR----------F 179
             + A  LF+ M    V       IG   +    G VE+G K++  + R          +
Sbjct: 326 RAEDALALFNKMINTGVKPNAVTFIGILHACSHMGMVEKGRKYFASMTRDYGIVPRIEHY 385

Query: 180 SISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDA 239
               + FS AG+L    +  E  +   +    +V G L    +    V    K  E  +A
Sbjct: 386 GCMVDLFSRAGLLQ---EAHEFIMNMPIAPNGVVWGAL----LGGCKVHKNIKLAE--EA 436

Query: 240 RRLFDETDARDVLTWTTMVSGYAKLG---DMESASKLFNEMPEKNPVSWTTLI 289
            R   + D  +   +  + + YA+ G   D+    KL  +   K    W++++
Sbjct: 437 TRHLSKLDPLNDGYYVVLSNIYAEAGRWEDVARVRKLMRDRGVKKTPGWSSIM 489



 Score = 52.4 bits (124), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 42/184 (22%), Positives = 80/184 (43%), Gaps = 3/184 (1%)

Query: 337 KQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQ 396
           KQ+H  L++TN   +++ +S +  + +     +  + +F L D  E +  WNT + +  +
Sbjct: 32  KQLHAHLLKTNSPLSSLPLSRVASVCAFNSSFSYAKLIFQLLDASEVTH-WNTCLRSFAE 90

Query: 397 HGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQE 456
                 AI LF+ +    + PD  T + +L AC+    V+ G          LG+  N  
Sbjct: 91  GDSPADAISLFYRLREFDISPDHYTCSFVLKACSRLLDVRNG-KIVHGYVEKLGLQSNMF 149

Query: 457 HHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQ 516
               ++ L A  G         +KMP + D   WN +       G+ +   K+  ++ ++
Sbjct: 150 LQNMIVHLYALCGEIGVARKVFDKMP-QRDVITWNIMIARLVKMGDAEGAYKLFAEMPER 208

Query: 517 NPQS 520
           N +S
Sbjct: 209 NVRS 212


>gi|108710611|gb|ABF98406.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 787

 Score =  332 bits (850), Expect = 5e-88,   Method: Compositional matrix adjust.
 Identities = 171/507 (33%), Positives = 296/507 (58%), Gaps = 10/507 (1%)

Query: 92  NHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVV 151
           N LI++Y + G    AR++FD++ V+++ S+  +L  YA LG ++ AR + D M ER+ V
Sbjct: 285 NSLITLYLRKGDADAARRMFDEMEVRDVVSWTALLDVYAELGDLEGARRVLDEMPERNEV 344

Query: 152 SWNTMIIGYAKSGAVEEGLKFYKVLR----RFSISCNEFSFAGILTICVKLEELKLTRQV 207
           SW T++  + + G  +E +  Y  +     R +ISC    F+ +L  C  L++L+  R++
Sbjct: 345 SWGTLVARHEQKGNAKEAVSLYSQMLADGCRPNISC----FSSVLGACASLQDLRSGRKI 400

Query: 208 HGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDM 267
           H Q L     +NV +SS+++D Y KC +L DA+ +F     ++++ W +++SGY+    M
Sbjct: 401 HNQTLKMACSNNVFVSSALIDMYCKCKQLPDAQMIFYSLPQKNIVCWNSLISGYSNNSKM 460

Query: 268 ESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCAC 327
             A +LF +MP +N  SW ++I+GY +N     AL+ F  M+     P + TFSS L AC
Sbjct: 461 VEAEELFKKMPARNVASWNSIISGYAQNRQFIDALKSFHAMLASGQSPGEITFSSVLLAC 520

Query: 328 ASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLW 387
           AS+ SL+ GK VH  +I+   + +  V ++L DMY+K G L+  ++VF     K N + W
Sbjct: 521 ASLCSLEMGKMVHAKIIKLGIKESIFVGTALSDMYAKSGDLDSSKRVF-YEMPKRNDVAW 579

Query: 388 NTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTH 447
             MI  L ++G+ E++I LF DM+ + + P++ T   IL AC+HSGLV+  + YFE M  
Sbjct: 580 TAMIQGLAENGFAEESILLFEDMISAGITPNEQTFLAILFACSHSGLVEHAMHYFE-MMQ 638

Query: 448 DLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGR 507
             GI P  +H+ C++++LA+AG   +  + L K+  + ++  W AL   C I+ N +MG 
Sbjct: 639 ACGISPKAKHYTCMVDVLARAGHLAEAEDLLLKIESKSEANSWAALLSACNIYRNKEMGE 698

Query: 508 KVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKV 567
           +   +L + +  ++A + LLS++Y++ GK +   ++R L+     KK+   SW++I  + 
Sbjct: 699 RAAKRLQELDKDNTAGYVLLSNMYASCGKWKDAAEMRILMKGINLKKDGGCSWVQIRGQY 758

Query: 568 HAFSVSDSLHPMRDVLYSVLEQLAGQM 594
            AF   ++ HP+   +Y +L+ L  ++
Sbjct: 759 QAFFSWETKHPLLPDVYEMLDLLTWEL 785



 Score =  201 bits (511), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 126/442 (28%), Positives = 217/442 (49%), Gaps = 41/442 (9%)

Query: 87  TTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMA 146
           + F  + ++  + K G  V AR++FD +P +++ SY  M+      G ++ A  L+    
Sbjct: 147 SPFAYDFMVREHVKAGDIVSARRLFDGMPERSVVSYTTMVDALMKRGSVRDAVELYRQCP 206

Query: 147 ERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQ 206
              V  +  MI G+  +   ++ L  +  +    +S NE +   ++  C+   E  L   
Sbjct: 207 LCSVPFFTAMIAGFVLNELPKDALGVFHEMLSCGVSPNEITLVSVIKACIGAGEFDLAMS 266

Query: 207 VHGQVLVTGFL-SNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLG 265
           + G  + +  L  N+ + +S++  Y + G+   ARR+FDE + RDV++WT ++  YA+LG
Sbjct: 267 IVGLAMKSNLLDKNLGVRNSLITLYLRKGDADAARRMFDEMEVRDVVSWTALLDVYAELG 326

Query: 266 DMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLC 325
           D+E A ++ +EMPE+N VSW TL+A + + G  ++A+ L+++M+    RPN   FSS L 
Sbjct: 327 DLEGARRVLDEMPERNEVSWGTLVARHEQKGNAKEAVSLYSQMLADGCRPNISCFSSVLG 386

Query: 326 ACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKE--- 382
           ACAS+  L+ G+++H   ++    +N  V S+LIDMY KC  L D + +F     K    
Sbjct: 387 ACASLQDLRSGRKIHNQTLKMACSNNVFVSSALIDMYCKCKQLPDAQMIFYSLPQKNIVC 446

Query: 383 -NSML--------------------------WNTMISALTQHGYDEQAIRLFHDMVRSSV 415
            NS++                          WN++IS   Q+     A++ FH M+ S  
Sbjct: 447 WNSLISGYSNNSKMVEAEELFKKMPARNVASWNSIISGYAQNRQFIDALKSFHAMLASGQ 506

Query: 416 KPDKITLAVILNACTHSGLVQEGLTYFESMTH----DLGIIPNQEHHACLIELLAQAGCS 471
            P +IT + +L AC     ++ G      M H     LGI  +      L ++ A++G  
Sbjct: 507 SPGEITFSSVLLACASLCSLEMG-----KMVHAKIIKLGIKESIFVGTALSDMYAKSGDL 561

Query: 472 DQLMNQLEKMPYEHDSYLWNAL 493
           D       +MP  +D   W A+
Sbjct: 562 DSSKRVFYEMPKRND-VAWTAM 582


>gi|125548358|gb|EAY94180.1| hypothetical protein OsI_15952 [Oryza sativa Indica Group]
          Length = 655

 Score =  332 bits (850), Expect = 5e-88,   Method: Compositional matrix adjust.
 Identities = 185/540 (34%), Positives = 288/540 (53%), Gaps = 59/540 (10%)

Query: 94  LISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSW 153
           L++ Y +CG   +AR++F++IP +N+ S+N M+SGYA  GM+K AR LFD M  RD VSW
Sbjct: 102 LLTGYARCGRVAEARELFNRIPDRNVVSWNAMVSGYARNGMVKRARELFDMMPWRDDVSW 161

Query: 154 NTMIIGYAK--------------------------SGAVEEG------LKFYKVLRRFSI 181
            TMI GY K                          SG VE G      + F ++  R  +
Sbjct: 162 LTMISGYIKRKHVREARELFDSMPSPPTSVCNALLSGYVELGYMRAAEVLFGQMQTRNPV 221

Query: 182 SCN----EFSFAGILTICVKL-EELKLTRQVHGQVLVTGFLSN----------------- 219
           S N     ++ AG + I  +L +E+     +    ++ G+L N                 
Sbjct: 222 SWNVMITGYARAGSMGIAQRLFDEMPEKDVLSRTAIMRGYLQNGSVDAAWKVFKDMPHRD 281

Query: 220 VVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPE 279
            V  ++++D + +   L DA +LF E   RD ++W  ++ GY + GDM+SA+  F   P 
Sbjct: 282 TVAWNTMMDGFVRNDRLDDALKLFSEMPDRDQISWHAILQGYVQQGDMDSANVWFPRAPN 341

Query: 280 KNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQV 339
           K+ +SW TLI+GY   G    AL L + M+   ++P+Q T S  +  CAS+VSL  GK V
Sbjct: 342 KDAISWNTLISGYKDEG----ALSLLSEMIRGGLKPDQATLSVVISICASLVSLGCGKMV 397

Query: 340 HGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGY 399
           H + I+T F  + +VMSSLI MYSKCG +++  QVF+L   ++ ++ WN MI+    HG 
Sbjct: 398 HLWAIKTGFEHDALVMSSLISMYSKCGLISEASQVFELILQRD-TVTWNAMIATYAYHGL 456

Query: 400 DEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHA 459
            ++A+++F  M ++  +PD  T   IL+AC H G + EG  +F SM  D  ++P  +H++
Sbjct: 457 ADEALKVFDMMTKAGFRPDHATFLSILSACAHKGYLYEGCYHFRSMQEDWNLVPRSDHYS 516

Query: 460 CLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQ 519
           C+++LL ++G   Q  +   ++P +H +  W  L   C  HG I +G  +   ++   P 
Sbjct: 517 CMVDLLGRSGFIHQAYDFTRRIPSDHRTTAWETLFSACNSHGEIQLGEIIARNVLKARPS 576

Query: 520 SSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPM 579
               + LLS+IY+A         VR  + ER  KKE   SWIE++ +V  FS +DS HP+
Sbjct: 577 DGGMYTLLSNIYAAKEMWSSAASVRGFMKERGLKKETGCSWIELKGEVVTFSSNDSNHPL 636



 Score =  172 bits (436), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 132/487 (27%), Positives = 231/487 (47%), Gaps = 90/487 (18%)

Query: 88  TFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAE 147
            F  N ++S   +     +ARKVFD +PV+N  S+  +L+GYA  G +  AR LF+ + +
Sbjct: 65  VFTWNCMVSGLIRNRMLAEARKVFDAMPVRNSVSWAALLTGYARCGRVAEARELFNRIPD 124

Query: 148 RDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQV 207
           R+VVSWN M+ GYA++G V+   + + ++       ++ S+  +++  +K + ++  R++
Sbjct: 125 RNVVSWNAMVSGYARNGMVKRARELFDMMPWR----DDVSWLTMISGYIKRKHVREAREL 180

Query: 208 HGQV----------LVTGFLS-----------------NVVISSSIVDAYAKCGELSDAR 240
              +          L++G++                  N V  + ++  YA+ G +  A+
Sbjct: 181 FDSMPSPPTSVCNALLSGYVELGYMRAAEVLFGQMQTRNPVSWNVMITGYARAGSMGIAQ 240

Query: 241 RLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQK 300
           RLFDE   +DVL+ T ++ GY + G +++A K+F +MP ++ V+W T++ G+ RN     
Sbjct: 241 RLFDEMPEKDVLSRTAIMRGYLQNGSVDAAWKVFKDMPHRDTVAWNTMMDGFVRNDRLDD 300

Query: 301 ALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLID 360
           AL+LF+ M      P++                                 + I   +++ 
Sbjct: 301 ALKLFSEM------PDR---------------------------------DQISWHAILQ 321

Query: 361 MYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGY-DEQAIRLFHDMVRSSVKPDK 419
            Y + G ++     F    NK+ ++ WNT+IS     GY DE A+ L  +M+R  +KPD+
Sbjct: 322 GYVQQGDMDSANVWFPRAPNKD-AISWNTLIS-----GYKDEGALSLLSEMIRGGLKPDQ 375

Query: 420 ITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHA----CLIELLAQAGCSDQLM 475
            TL+V+++ C  + LV  G      M H   I    EH A     LI + ++ G   +  
Sbjct: 376 ATLSVVISIC--ASLVSLGCG---KMVHLWAIKTGFEHDALVMSSLISMYSKCGLISE-A 429

Query: 476 NQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALG 535
           +Q+ ++  + D+  WNA+      HG  D   KV D +     +    H    SI SA  
Sbjct: 430 SQVFELILQRDTVTWNAMIATYAYHGLADEALKVFDMMTKAGFRPD--HATFLSILSACA 487

Query: 536 -KGRLVE 541
            KG L E
Sbjct: 488 HKGYLYE 494



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 103/475 (21%), Positives = 193/475 (40%), Gaps = 113/475 (23%)

Query: 142 FDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEEL 201
           FD M+ER+V +WN M+ G  ++  + E  K +  +       N  S+A +LT        
Sbjct: 57  FDEMSERNVFTWNCMVSGLIRNRMLAEARKVFDAMP----VRNSVSWAALLT-------- 104

Query: 202 KLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGY 261
                                       YA+CG +++AR LF+    R+V++W  MVSGY
Sbjct: 105 ---------------------------GYARCGRVAEARELFNRIPDRNVVSWNAMVSGY 137

Query: 262 AKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFS 321
           A+ G ++ A +LF+ MP ++ VSW T+I+GY +    ++A ELF  M      P+  T S
Sbjct: 138 ARNGMVKRARELFDMMPWRDDVSWLTMISGYIKRKHVREARELFDSM------PSPPT-S 190

Query: 322 SCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNK 381
            C    +  V L + +       +   R N +  + +I  Y++ G +   +++FD    K
Sbjct: 191 VCNALLSGYVELGYMRAAEVLFGQMQTR-NPVSWNVMITGYARAGSMGIAQRLFDEMPEK 249

Query: 382 E------------------------------NSMLWNTMISALTQHGYDEQAIRLFHDMV 411
           +                              +++ WNTM+    ++   + A++LF +M 
Sbjct: 250 DVLSRTAIMRGYLQNGSVDAAWKVFKDMPHRDTVAWNTMMDGFVRNDRLDDALKLFSEM- 308

Query: 412 RSSVKPDKITLAVILNACTHSGLVQEGLTYFE-----------------------SMTHD 448
                 D+I+   IL      G +     +F                        S+  +
Sbjct: 309 ---PDRDQISWHAILQGYVQQGDMDSANVWFPRAPNKDAISWNTLISGYKDEGALSLLSE 365

Query: 449 L---GIIPNQEHHACLIEL---LAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGN 502
           +   G+ P+Q   + +I +   L   GC   +     K  +EHD+ + ++L  +    G 
Sbjct: 366 MIRGGLKPDQATLSVVISICASLVSLGCGKMVHLWAIKTGFEHDALVMSSLISMYSKCGL 425

Query: 503 IDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQA 557
           I    +V + ++ ++   + T   + + Y+  G      KV  ++ +  F+ + A
Sbjct: 426 ISEASQVFELILQRD---TVTWNAMIATYAYHGLADEALKVFDMMTKAGFRPDHA 477



 Score = 63.2 bits (152), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 49/175 (28%), Positives = 86/175 (49%), Gaps = 12/175 (6%)

Query: 7   PRGINRKNLPNNCLIQSFLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESK 66
           PR  N+  +  N LI  +       +   A+S L  + + G++    TL+ ++  CA   
Sbjct: 337 PRAPNKDAISWNTLISGY-------KDEGALSLLSEMIRGGLKPDQATLSVVISICASLV 389

Query: 67  SLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNML 126
           SL  GK VHL    T  +     +S+ LISMY KCG   +A +VF+ I  ++  ++N M+
Sbjct: 390 SLGCGKMVHLWAIKTGFEHDALVMSS-LISMYSKCGLISEASQVFELILQRDTVTWNAMI 448

Query: 127 SGYANLGMMKHARNLFDNMAER----DVVSWNTMIIGYAKSGAVEEGLKFYKVLR 177
           + YA  G+   A  +FD M +     D  ++ +++   A  G + EG   ++ ++
Sbjct: 449 ATYAYHGLADEALKVFDMMTKAGFRPDHATFLSILSACAHKGYLYEGCYHFRSMQ 503


>gi|225423499|ref|XP_002274432.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 738

 Score =  331 bits (849), Expect = 6e-88,   Method: Compositional matrix adjust.
 Identities = 185/563 (32%), Positives = 300/563 (53%), Gaps = 41/563 (7%)

Query: 34  SEAISSLDLLAQR---GIRLPAETLAFILQQCAESKSLKLGKRVHLH-LKLTQRKTPTTF 89
           S  + ++D   +    G+   + T  F+L+ CA+  + + GK++H H LKL     P  F
Sbjct: 111 SSPVGAIDFYVRMLLCGVEPNSYTFPFLLKSCAKVGATQEGKQIHGHVLKLGLESDP--F 168

Query: 90  LSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERD 149
           +   LI+MY + G    A  VF K  +++  S+  +++GY   G +  AR LF+ +  RD
Sbjct: 169 VHTSLINMYAQNGELGYAELVFSKSSLRDAVSFTALITGYTLRGCLDDARRLFEEIPVRD 228

Query: 150 VVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHG 209
            VSWN MI GYA+SG  EE L F++ ++R +++ NE +   +L+ C +   L+L   V  
Sbjct: 229 AVSWNAMIAGYAQSGRFEEALAFFQEMKRANVAPNESTMVTVLSACAQSGSLELGNWVRS 288

Query: 210 QVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMES 269
            +   G  SN+ + ++++D Y+KCG                               D++ 
Sbjct: 289 WIEDHGLGSNLRLVNALIDMYSKCG-------------------------------DLDK 317

Query: 270 ASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACAS 329
           A  LF  + EK+ +SW  +I GY+     ++AL LF +M    + PN  TF S L ACA 
Sbjct: 318 ARDLFEGICEKDIISWNVMIGGYSHMNSYKEALALFRKMQQSNVEPNDVTFVSILPACAY 377

Query: 330 IVSLKHGKQVHGFLIRTNFR-SNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSM-LW 387
           + +L  GK +H ++ +     +NT + +SLIDMY+KCG +   +QVF     K  S+  W
Sbjct: 378 LGALDLGKWIHAYIDKKFLGLTNTSLWTSLIDMYAKCGNIEAAKQVF--AGMKPKSLGSW 435

Query: 388 NTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTH 447
           N MIS L  HG+   A+ LF  M     +PD IT   +L+AC+H+GLV+ G   F SM  
Sbjct: 436 NAMISGLAMHGHANMALELFRQMRDEGFEPDDITFVGVLSACSHAGLVELGRQCFSSMVE 495

Query: 448 DLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGR 507
           D  I P  +H+ C+I+LL +AG  D+    ++ M  + D  +W +L G CR+HGN+++G 
Sbjct: 496 DYDISPKLQHYGCMIDLLGRAGLFDEAEALMKNMEMKPDGAIWGSLLGACRVHGNVELGE 555

Query: 508 KVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKV 567
                L +  P++   + LLS+IY+  G+   V ++R  +N++  KK    S IE+++ V
Sbjct: 556 FAAKHLFELEPENPGAYVLLSNIYATAGRWDDVARIRTKLNDKGMKKVPGCSSIEVDSVV 615

Query: 568 HAFSVSDSLHPMRDVLYSVLEQL 590
           H F V D +H     +Y +L+++
Sbjct: 616 HEFLVGDKVHEQSQDIYKMLDEI 638



 Score =  201 bits (512), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 139/480 (28%), Positives = 237/480 (49%), Gaps = 18/480 (3%)

Query: 76  LHLKLTQRKTPTTFLSNHL-ISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLS------G 128
           LH + T    P   L NH  +++   C S  + +++  +I    L +    LS       
Sbjct: 17  LHFQPTS-DPPYKLLQNHPSLTLLSTCKSFQNLKQIHSQIIKTGLHNTQFALSKLIEFCA 75

Query: 129 YANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSF 188
            +  G + +A  LF+++ + +   WNTMI G + S +    + FY  +    +  N ++F
Sbjct: 76  ISPFGNLSYALLLFESIEQPNQFIWNTMIRGNSLSSSPVGAIDFYVRMLLCGVEPNSYTF 135

Query: 189 AGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDA 248
             +L  C K+   +  +Q+HG VL  G  S+  + +S+++ YA+ GEL  A  +F ++  
Sbjct: 136 PFLLKSCAKVGATQEGKQIHGHVLKLGLESDPFVHTSLINMYAQNGELGYAELVFSKSSL 195

Query: 249 RDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRM 308
           RD +++T +++GY   G ++ A +LF E+P ++ VSW  +IAGY ++G  ++AL  F  M
Sbjct: 196 RDAVSFTALITGYTLRGCLDDARRLFEEIPVRDAVSWNAMIAGYAQSGRFEEALAFFQEM 255

Query: 309 MILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCL 368
               + PN+ T  + L ACA   SL+ G  V  ++      SN  ++++LIDMYSKCG L
Sbjct: 256 KRANVAPNESTMVTVLSACAQSGSLELGNWVRSWIEDHGLGSNLRLVNALIDMYSKCGDL 315

Query: 369 NDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNA 428
           +  R +F+    K+  + WN MI   +     ++A+ LF  M +S+V+P+ +T   IL A
Sbjct: 316 DKARDLFEGICEKD-IISWNVMIGGYSHMNSYKEALALFRKMQQSNVEPNDVTFVSILPA 374

Query: 429 CTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKM-PYEHDS 487
           C + G +  G      +      + N      LI++ A+ G  +        M P    S
Sbjct: 375 CAYLGALDLGKWIHAYIDKKFLGLTNTSLWTSLIDMYAKCGNIEAAKQVFAGMKPKSLGS 434

Query: 488 YLWNALHGVCRIHGNIDMGRKVVDQLIDQN--PQSSATHGLLSSIYSALGKGRLVEKVRQ 545
             WNA+     +HG+ +M  ++  Q+ D+   P      G+L    SA     LVE  RQ
Sbjct: 435 --WNAMISGLAMHGHANMALELFRQMRDEGFEPDDITFVGVL----SACSHAGLVELGRQ 488



 Score =  109 bits (272), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 87/370 (23%), Positives = 150/370 (40%), Gaps = 65/370 (17%)

Query: 31  GQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFL 90
           G+  EA++    + +  +     T+  +L  CA+S SL+LG  V   ++          L
Sbjct: 243 GRFEEALAFFQEMKRANVAPNESTMVTVLSACAQSGSLELGNWVRSWIE-DHGLGSNLRL 301

Query: 91  SNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDV 150
            N LI MY KCG    AR +F+ I  K++ S+N M+ GY+++   K A  LF  M + +V
Sbjct: 302 VNALIDMYSKCGDLDKARDLFEGICEKDIISWNVMIGGYSHMNSYKEALALFRKMQQSNV 361

Query: 151 VSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQ 210
                                            N+ +F  IL  C  L  L L + +H  
Sbjct: 362 -------------------------------EPNDVTFVSILPACAYLGALDLGKWIHAY 390

Query: 211 VLVTGF-LSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMES 269
           +      L+N  + +S++D YAKCG +  A+++F     + + +W  M+SG A       
Sbjct: 391 IDKKFLGLTNTSLWTSLIDMYAKCGNIEAAKQVFAGMKPKSLGSWNAMISGLA------- 443

Query: 270 ASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACAS 329
                                    +G    ALELF +M      P+  TF   L AC+ 
Sbjct: 444 ------------------------MHGHANMALELFRQMRDEGFEPDDITFVGVLSACSH 479

Query: 330 IVSLKHGKQVHGFLIRTNFRSNTIV-MSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWN 388
              ++ G+Q    ++     S  +     +ID+  + G  ++   +    + K +  +W 
Sbjct: 480 AGLVELGRQCFSSMVEDYDISPKLQHYGCMIDLLGRAGLFDEAEALMKNMEMKPDGAIWG 539

Query: 389 TMISALTQHG 398
           +++ A   HG
Sbjct: 540 SLLGACRVHG 549


>gi|449476227|ref|XP_004154678.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At2g22410, mitochondrial-like [Cucumis sativus]
          Length = 681

 Score =  331 bits (848), Expect = 8e-88,   Method: Compositional matrix adjust.
 Identities = 169/486 (34%), Positives = 272/486 (55%), Gaps = 3/486 (0%)

Query: 118 NLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLR 177
           +LF +N ++    + G +  AR LFD    RD+VSWN++I GY + G  +E    Y  + 
Sbjct: 189 DLFVHNAIIHVLVSCGELLAARKLFDESCVRDLVSWNSIINGYVRCGLADEAFDLYYKMG 248

Query: 178 RFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELS 237
             ++  +E +  G+++   +LE L L R++H  +   G    V ++++++D Y KC  + 
Sbjct: 249 ELNVMPDEVTMIGVVSASAQLENLALGRKLHQSIEEMGLNLTVPLANALMDMYIKCKNIE 308

Query: 238 DARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGL 297
            A+ LF+    + V++WTTMV GYAK G +ESA +LFNEMPEK+ V W  LI G+ +   
Sbjct: 309 AAKILFENMTKKTVVSWTTMVIGYAKFGLLESAVRLFNEMPEKDVVLWNALIGGFVQAKR 368

Query: 298 GQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSS 357
            ++AL LF  M    + P++ T  +CL AC+ + +L  G  +H ++ + N   N  + ++
Sbjct: 369 SKEALALFHEMQASSVAPDKITVVNCLSACSQLGALDVGIWMHHYVDKHNLTMNVALGTA 428

Query: 358 LIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKP 417
           L+DMY+KCG +    QVF+    + NS+ W  +I  L  HG    AI  F +M+   + P
Sbjct: 429 LVDMYAKCGNIKKAIQVFEEMPGR-NSLTWTAIICGLALHGQPHAAISYFSEMISIGLVP 487

Query: 418 DKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQ 477
           D+IT   +L+AC H GLV +G  YF  MT   GI P  +H++CL++LL +AG  ++    
Sbjct: 488 DEITFIGVLSACCHGGLVDQGRDYFYQMTSKYGISPKLKHYSCLVDLLGRAGFLEEAEEL 547

Query: 478 LEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKG 537
           +  MP+E D+ +W AL    RIHGN+ MG +   +L++ +P     + LL+++Y      
Sbjct: 548 IRSMPFEPDAVVWGALFFGSRIHGNVHMGERAASKLLELDPHDGGIYVLLANMYGDANMW 607

Query: 538 RLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQMG-- 595
               KVR+++ ER  +K    S IE+   V+ F + D  HP  + +Y  L +L  Q+   
Sbjct: 608 EQARKVRKMMEERGVEKTPGCSSIEMNGLVYDFIIRDKSHPQSEKIYECLTRLTRQIEVI 667

Query: 596 EDAPSL 601
           E  PSL
Sbjct: 668 EVDPSL 673



 Score =  142 bits (357), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 126/520 (24%), Positives = 227/520 (43%), Gaps = 63/520 (12%)

Query: 91  SNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNL------FDN 144
           SN L+S+   C S    +++  ++    L S    LS       +   RNL       +N
Sbjct: 54  SNPLLSLLEACTSMAKMKEIHAQMISTGLISDGFALSRLVAFCAISEWRNLDYCDKILNN 113

Query: 145 MAERDVVSWNTMIIGYAKS-GAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKL 203
            A  +  SWN  I GY +S   +   L +  +LR+ S   + +++  +  +C        
Sbjct: 114 AANLNXFSWNMAIRGYVESENPINAVLLYRNMLRKGSAIPDNYTYPLLFKVCAGFSLSWT 173

Query: 204 TRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAK 263
             ++ G V+  GF S++ + ++I+     CGEL  AR+LFDE+  RD+++W ++++GY +
Sbjct: 174 ANEILGHVIQLGFDSDLFVHNAIIHVLVSCGELLAARKLFDESCVRDLVSWNSIINGYVR 233

Query: 264 LGDMESASKLFNEMPEKNPVSWTTLIAGYTRN-------GLGQKALELFTRMMILRIRPN 316
            G  + A  L+ +M E N +     + G            LG+K  +    M +    P 
Sbjct: 234 CGLADEAFDLYYKMGELNVMPDEVTMIGVVSASAQLENLALGRKLHQSIEEMGLNLTVPL 293

Query: 317 QHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIV-MSSLIDMYSKCGCLNDGRQVF 375
            +        C +I + K        ++  N    T+V  ++++  Y+K G L    ++F
Sbjct: 294 ANALMDMYIKCKNIEAAK--------ILFENMTKKTVVSWTTMVIGYAKFGLLESAVRLF 345

Query: 376 DLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLV 435
           +    K+  +LWN +I    Q    ++A+ LFH+M  SSV PDKIT+   L+AC+  G +
Sbjct: 346 NEMPEKD-VVLWNALIGGFVQAKRSKEALALFHEMQASSVAPDKITVVNCLSACSQLGAL 404

Query: 436 QEGLTYFESM-THDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALH 494
             G+     +  H+L +  N      L+++ A+ G   + +   E+MP   +S  W A+ 
Sbjct: 405 DVGIWMHHYVDKHNLTM--NVALGTALVDMYAKCGNIKKAIQVFEEMP-GRNSLTWTAII 461

Query: 495 GVCRIHGN-----------IDMG-----------------RKVVDQLIDQNPQSSATHGL 526
               +HG            I +G                   +VDQ  D   Q ++ +G+
Sbjct: 462 CGLALHGQPHAAISYFSEMISIGLVPDEITFIGVLSACCHGGLVDQGRDYFYQMTSKYGI 521

Query: 527 ------LSSIYSALGKGRLVEKVRQLINERQFKKEQAISW 560
                  S +   LG+   +E+  +LI    F+ + A+ W
Sbjct: 522 SPKLKHYSCLVDLLGRAGFLEEAEELIRSMPFEPD-AVVW 560



 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 84/351 (23%), Positives = 163/351 (46%), Gaps = 34/351 (9%)

Query: 50  LPAE-TLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDAR 108
           +P E T+  ++   A+ ++L LG+++H  ++       T  L+N L+ MY KC +   A+
Sbjct: 253 MPDEVTMIGVVSASAQLENLALGRKLHQSIE-EMGLNLTVPLANALMDMYIKCKNIEAAK 311

Query: 109 KVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEE 168
            +F+ +  K + S+  M+ GYA  G+++ A  LF+ M E+DVV WN +I G+ ++   +E
Sbjct: 312 ILFENMTKKTVVSWTTMVIGYAKFGLLESAVRLFNEMPEKDVVLWNALIGGFVQAKRSKE 371

Query: 169 GLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVD 228
            L  +  ++  S++ ++ +    L+ C +L  L +   +H  V       NV + +++VD
Sbjct: 372 ALALFHEMQASSVAPDKITVVNCLSACSQLGALDVGIWMHHYVDKHNLTMNVALGTALVD 431

Query: 229 AYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTL 288
            YAKCG +  A ++F+E   R+ LTWT ++ G A                          
Sbjct: 432 MYAKCGNIKKAIQVFEEMPGRNSLTWTAIICGLA-------------------------- 465

Query: 289 IAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQ-VHGFLIRTN 347
                 +G    A+  F+ M+ + + P++ TF   L AC     +  G+   +    +  
Sbjct: 466 -----LHGQPHAAISYFSEMISIGLVPDEITFIGVLSACCHGGLVDQGRDYFYQMTSKYG 520

Query: 348 FRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHG 398
                   S L+D+  + G L +  ++      + ++++W  +      HG
Sbjct: 521 ISPKLKHYSCLVDLLGRAGFLEEAEELIRSMPFEPDAVVWGALFFGSRIHG 571


>gi|49333376|gb|AAT64016.1| putative pentatricopeptide repeat protein [Gossypium hirsutum]
          Length = 805

 Score =  331 bits (848), Expect = 9e-88,   Method: Compositional matrix adjust.
 Identities = 192/638 (30%), Positives = 331/638 (51%), Gaps = 73/638 (11%)

Query: 32  QLSEAISSLDLLAQ-RGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFL 90
           QL +  ++++L+   +   L  +T + +LQ CA  KS   GK+VH  +K          L
Sbjct: 78  QLGDLENAMELICMCKKSELETKTYSSVLQLCAGLKSFTDGKKVHSIIKSNSVGVDEA-L 136

Query: 91  SNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKH------------- 137
              L+S Y  CG   + R+VFD +  KN++ +N M+S YA +G  K              
Sbjct: 137 GLKLVSFYATCGDLKEGRRVFDTMEKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKGI 196

Query: 138 -------ARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAG 190
                  A  LFD + +RDV+SWN+MI GY  +G  E GL  YK +    I  +  +   
Sbjct: 197 EGKRPESAFELFDKLCDRDVISWNSMISGYVSNGLTERGLGIYKQMMYLGIDVDLATIIS 256

Query: 191 ILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARD 250
           +L  C     L L + VH   + + F   +  S++++D Y+KCG+L  A R+F++   R+
Sbjct: 257 VLVGCANSGTLSLGKAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERN 316

Query: 251 VLTWTTMVSGYAKLGDMESASKLFNEMP-------------------------------- 278
           V++WT+M++GY + G  + A KL  +M                                 
Sbjct: 317 VVSWTSMIAGYTRDGRSDGAIKLLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHD 376

Query: 279 -------EKNPVSWTTLIAGYTRNGLGQKALELFTRM----------MILRIRPNQHTFS 321
                  E N      L+  Y + G  + A  +F+ M          MI  ++P+  T +
Sbjct: 377 YIKANNMESNLFVCNALMDMYAKCGSMEAANSVFSTMVVKDIISWNTMIGELKPDSRTMA 436

Query: 322 SCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNK 381
             L ACAS+ +L+ GK++HG+++R  + S+  V ++L+D+Y KCG L   R +FD+  +K
Sbjct: 437 CVLPACASLSALERGKEIHGYILRNGYSSDRHVANALVDLYVKCGVLGLARLLFDMIPSK 496

Query: 382 ENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTY 441
           +  + W  MI+    HGY  +AI  F++M  + ++PD+++   IL AC+HSGL+++G  +
Sbjct: 497 D-LVSWTVMIAGYGMHGYGNEAIATFNEMRDAGIEPDEVSFISILYACSHSGLLEQGWRF 555

Query: 442 FESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHG 501
           F  M +D  I P  EH+AC+++LL++ G   +    +E +P   D+ +W AL   CR + 
Sbjct: 556 FYIMKNDFNIEPKLEHYACMVDLLSRTGNLSKAYEFIETLPIAPDATIWGALLCGCRNYH 615

Query: 502 NIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWI 561
           +I++  KV +++ +  P++S  + LL++IY+   K   V+++R+ I ++  +K    SWI
Sbjct: 616 DIELAEKVAERVFELEPENSGYYVLLANIYAEAEKWEEVKRLREKIGKQGLRKNPGCSWI 675

Query: 562 EIENKVHAF-SVSDSLHPMRDVLYSVLEQLAGQMGEDA 598
           EI+ KV+ F S ++S HP    + S+L+++  +M E+ 
Sbjct: 676 EIKGKVNLFVSGNNSSHPHSKNIESLLKKMRRKMKEEG 713



 Score =  119 bits (299), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 90/351 (25%), Positives = 156/351 (44%), Gaps = 57/351 (16%)

Query: 11  NRKNLPNNCLIQSFLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKL 70
           +R  +  N +I  +   +S G     +     +   GI +   T+  +L  CA S +L L
Sbjct: 213 DRDVISWNSMISGY---VSNGLTERGLGIYKQMMYLGIDVDLATIISVLVGCANSGTLSL 269

Query: 71  GKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYA 130
           GK VH  L +          SN L+ MY KCG    A +VF+K+  +N+ S+ +M++GY 
Sbjct: 270 GKAVH-SLAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYT 328

Query: 131 NLGMMKHARNLFDNMAER----DVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEF 186
             G    A  L   M +     DVV+  +++   A+SG+++ G   +  ++  ++  N F
Sbjct: 329 RDGRSDGAIKLLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHDYIKANNMESNLF 388

Query: 187 ---------------------------------------------SFAGILTICVKLEEL 201
                                                        + A +L  C  L  L
Sbjct: 389 VCNALMDMYAKCGSMEAANSVFSTMVVKDIISWNTMIGELKPDSRTMACVLPACASLSAL 448

Query: 202 KLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGY 261
           +  +++HG +L  G+ S+  +++++VD Y KCG L  AR LFD   ++D+++WT M++GY
Sbjct: 449 ERGKEIHGYILRNGYSSDRHVANALVDLYVKCGVLGLARLLFDMIPSKDLVSWTVMIAGY 508

Query: 262 AKLGDMESASKLFNEMP----EKNPVSWTTLIAGYTRNGLGQKALELFTRM 308
              G    A   FNEM     E + VS+ +++   + +GL ++    F  M
Sbjct: 509 GMHGYGNEAIATFNEMRDAGIEPDEVSFISILYACSHSGLLEQGWRFFYIM 559



 Score = 89.4 bits (220), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 82/328 (25%), Positives = 126/328 (38%), Gaps = 78/328 (23%)

Query: 21  IQSFLSLIS----KGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHL 76
           + S+ S+I+     G+   AI  L  + + G++L    +  IL  CA S SL  GK VH 
Sbjct: 317 VVSWTSMIAGYTRDGRSDGAIKLLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHD 376

Query: 77  HLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSG-------- 128
           ++K    ++   F+ N L+ MY KCGS   A  VF  + VK++ S+N M+          
Sbjct: 377 YIKANNMES-NLFVCNALMDMYAKCGSMEAANSVFSTMVVKDIISWNTMIGELKPDSRTM 435

Query: 129 -----------------------------------------YANLGMMKHARNLFDNMAE 147
                                                    Y   G++  AR LFD +  
Sbjct: 436 ACVLPACASLSALERGKEIHGYILRNGYSSDRHVANALVDLYVKCGVLGLARLLFDMIPS 495

Query: 148 RDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQV 207
           +D+VSW  MI GY   G   E +  +  +R   I  +E SF  IL  C            
Sbjct: 496 KDLVSWTVMIAGYGMHGYGNEAIATFNEMRDAGIEPDEVSFISILYAC-----------S 544

Query: 208 HGQVLVTGFLSNVVIS------------SSIVDAYAKCGELSDARRLFDETD-ARDVLTW 254
           H  +L  G+    ++             + +VD  ++ G LS A    +    A D   W
Sbjct: 545 HSGLLEQGWRFFYIMKNDFNIEPKLEHYACMVDLLSRTGNLSKAYEFIETLPIAPDATIW 604

Query: 255 TTMVSGYAKLGDMESASKLFNEMPEKNP 282
             ++ G     D+E A K+   + E  P
Sbjct: 605 GALLCGCRNYHDIELAEKVAERVFELEP 632


>gi|449442687|ref|XP_004139112.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
           mitochondrial-like [Cucumis sativus]
          Length = 681

 Score =  331 bits (848), Expect = 9e-88,   Method: Compositional matrix adjust.
 Identities = 169/486 (34%), Positives = 272/486 (55%), Gaps = 3/486 (0%)

Query: 118 NLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLR 177
           +LF +N ++    + G +  AR LFD    RD+VSWN++I GY + G  +E    Y  + 
Sbjct: 189 DLFVHNAIIHVLVSCGELLAARKLFDESCVRDLVSWNSIINGYVRCGLADEAFDLYYKMG 248

Query: 178 RFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELS 237
             ++  +E +  G+++   +LE L L R++H  +   G    V ++++++D Y KC  + 
Sbjct: 249 ELNVMPDEVTMIGVVSASAQLENLALGRKLHQSIEEMGLNLTVPLANALMDMYIKCKNIE 308

Query: 238 DARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGL 297
            A+ LF+    + V++WTTMV GYAK G +ESA +LFNEMPEK+ V W  LI G+ +   
Sbjct: 309 AAKILFENMTKKTVVSWTTMVIGYAKFGLLESAVRLFNEMPEKDVVLWNALIGGFVQAKR 368

Query: 298 GQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSS 357
            ++AL LF  M    + P++ T  +CL AC+ + +L  G  +H ++ + N   N  + ++
Sbjct: 369 SKEALALFHEMQASSVAPDKITVVNCLSACSQLGALDVGIWMHHYVDKHNLTMNVALGTA 428

Query: 358 LIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKP 417
           L+DMY+KCG +    QVF+    + NS+ W  +I  L  HG    AI  F +M+   + P
Sbjct: 429 LVDMYAKCGNIKKAIQVFEEMPGR-NSLTWTAIICGLALHGQPHAAISYFSEMISIGLVP 487

Query: 418 DKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQ 477
           D+IT   +L+AC H GLV +G  YF  MT   GI P  +H++CL++LL +AG  ++    
Sbjct: 488 DEITFIGVLSACCHGGLVDQGRDYFYQMTSKYGISPKLKHYSCLVDLLGRAGFLEEAEEL 547

Query: 478 LEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKG 537
           +  MP+E D+ +W AL    RIHGN+ MG +   +L++ +P     + LL+++Y      
Sbjct: 548 IRSMPFEPDAVVWGALFFGSRIHGNVHMGERAASKLLELDPHDGGIYVLLANMYGDANMW 607

Query: 538 RLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQMG-- 595
               KVR+++ ER  +K    S IE+   V+ F + D  HP  + +Y  L +L  Q+   
Sbjct: 608 EQARKVRKMMEERGVEKTPGCSSIEMNGLVYDFIIRDKSHPQSEKIYECLTRLTRQIEVI 667

Query: 596 EDAPSL 601
           E  PSL
Sbjct: 668 EVDPSL 673



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 127/520 (24%), Positives = 228/520 (43%), Gaps = 63/520 (12%)

Query: 91  SNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNL------FDN 144
           SN L+S+   C S    +++  ++    L S    LS       +   RNL       +N
Sbjct: 54  SNPLLSLLEACTSMAKMKEIHAQMISTGLISDGFALSRLVAFCAISEWRNLDYCDKILNN 113

Query: 145 MAERDVVSWNTMIIGYAKS-GAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKL 203
            A  +V SWN  I GY +S   +   L +  +LR+ S   + +++  +  +C        
Sbjct: 114 AANLNVFSWNMAIRGYVESENPINAVLLYRNMLRKGSAIPDNYTYPLLFKVCAGFSLSWT 173

Query: 204 TRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAK 263
             ++ G V+  GF S++ + ++I+     CGEL  AR+LFDE+  RD+++W ++++GY +
Sbjct: 174 ANEILGHVIQLGFDSDLFVHNAIIHVLVSCGELLAARKLFDESCVRDLVSWNSIINGYVR 233

Query: 264 LGDMESASKLFNEMPEKNPVSWTTLIAGYTRN-------GLGQKALELFTRMMILRIRPN 316
            G  + A  L+ +M E N +     + G            LG+K  +    M +    P 
Sbjct: 234 CGLADEAFDLYYKMGELNVMPDEVTMIGVVSASAQLENLALGRKLHQSIEEMGLNLTVPL 293

Query: 317 QHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIV-MSSLIDMYSKCGCLNDGRQVF 375
            +        C +I + K        ++  N    T+V  ++++  Y+K G L    ++F
Sbjct: 294 ANALMDMYIKCKNIEAAK--------ILFENMTKKTVVSWTTMVIGYAKFGLLESAVRLF 345

Query: 376 DLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLV 435
           +    K+  +LWN +I    Q    ++A+ LFH+M  SSV PDKIT+   L+AC+  G +
Sbjct: 346 NEMPEKD-VVLWNALIGGFVQAKRSKEALALFHEMQASSVAPDKITVVNCLSACSQLGAL 404

Query: 436 QEGLTYFESM-THDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALH 494
             G+     +  H+L +  N      L+++ A+ G   + +   E+MP   +S  W A+ 
Sbjct: 405 DVGIWMHHYVDKHNLTM--NVALGTALVDMYAKCGNIKKAIQVFEEMP-GRNSLTWTAII 461

Query: 495 GVCRIHGN-----------IDMG-----------------RKVVDQLIDQNPQSSATHGL 526
               +HG            I +G                   +VDQ  D   Q ++ +G+
Sbjct: 462 CGLALHGQPHAAISYFSEMISIGLVPDEITFIGVLSACCHGGLVDQGRDYFYQMTSKYGI 521

Query: 527 ------LSSIYSALGKGRLVEKVRQLINERQFKKEQAISW 560
                  S +   LG+   +E+  +LI    F+ + A+ W
Sbjct: 522 SPKLKHYSCLVDLLGRAGFLEEAEELIRSMPFEPD-AVVW 560



 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 84/351 (23%), Positives = 163/351 (46%), Gaps = 34/351 (9%)

Query: 50  LPAE-TLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDAR 108
           +P E T+  ++   A+ ++L LG+++H  ++       T  L+N L+ MY KC +   A+
Sbjct: 253 MPDEVTMIGVVSASAQLENLALGRKLHQSIE-EMGLNLTVPLANALMDMYIKCKNIEAAK 311

Query: 109 KVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEE 168
            +F+ +  K + S+  M+ GYA  G+++ A  LF+ M E+DVV WN +I G+ ++   +E
Sbjct: 312 ILFENMTKKTVVSWTTMVIGYAKFGLLESAVRLFNEMPEKDVVLWNALIGGFVQAKRSKE 371

Query: 169 GLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVD 228
            L  +  ++  S++ ++ +    L+ C +L  L +   +H  V       NV + +++VD
Sbjct: 372 ALALFHEMQASSVAPDKITVVNCLSACSQLGALDVGIWMHHYVDKHNLTMNVALGTALVD 431

Query: 229 AYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTL 288
            YAKCG +  A ++F+E   R+ LTWT ++ G A                          
Sbjct: 432 MYAKCGNIKKAIQVFEEMPGRNSLTWTAIICGLA-------------------------- 465

Query: 289 IAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQ-VHGFLIRTN 347
                 +G    A+  F+ M+ + + P++ TF   L AC     +  G+   +    +  
Sbjct: 466 -----LHGQPHAAISYFSEMISIGLVPDEITFIGVLSACCHGGLVDQGRDYFYQMTSKYG 520

Query: 348 FRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHG 398
                   S L+D+  + G L +  ++      + ++++W  +      HG
Sbjct: 521 ISPKLKHYSCLVDLLGRAGFLEEAEELIRSMPFEPDAVVWGALFFGSRIHG 571


>gi|357477961|ref|XP_003609266.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355510321|gb|AES91463.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 738

 Score =  330 bits (847), Expect = 9e-88,   Method: Compositional matrix adjust.
 Identities = 187/556 (33%), Positives = 297/556 (53%), Gaps = 39/556 (7%)

Query: 47  GIRLPAETLAFILQQCAESKSLKLGKRVHLH-LKLTQRKTPTTFLSNHLISMYFKCGSDV 105
           G++  + T  F+ + C ++K+   GK++H H LKL     P    S  +I MY   G   
Sbjct: 126 GVQPNSHTFPFLFKSCTKAKATHEGKQLHAHALKLALHFNPHVHTS--VIHMYASVGEMD 183

Query: 106 DARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGA 165
            AR VFDK  +++  S+  +++GY + G +  AR LFD +  +DVVSWN MI GY +SG 
Sbjct: 184 FARLVFDKSSLRDAVSFTALITGYVSQGCLDDARRLFDEIPVKDVVSWNAMISGYVQSGR 243

Query: 166 VEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSS 225
            EE +  +  ++  ++  N+ +   +L+ C      +L + +   V   GF SN+ ++++
Sbjct: 244 FEEAIVCFYEMQEANVLPNKSTMVVVLSACGHTRSGELGKWIGSWVRDNGFGSNLQLTNA 303

Query: 226 IVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSW 285
           ++D Y KCGE   AR LFD  + +DV++W TM+ GY+ L                     
Sbjct: 304 LIDMYCKCGETDIARELFDGIEEKDVISWNTMIGGYSYL--------------------- 342

Query: 286 TTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIR 345
                      L ++AL LF  M+   ++PN  TF   L ACA + +L  GK VH + I 
Sbjct: 343 ----------SLYEEALALFEVMLRSNVKPNDVTFLGILHACACLGALDLGKWVHAY-ID 391

Query: 346 TNFR--SNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQA 403
            N R  SN  + +SLIDMY+KCGC+    +VF  + +  N   WN M+S    HG+ E+A
Sbjct: 392 KNLRNSSNASLWTSLIDMYAKCGCIEAAERVFR-SMHSRNLASWNAMLSGFAMHGHAERA 450

Query: 404 IRLFHDMVRSSV-KPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLI 462
           + LF +MV   + +PD IT   +L+ACT +GLV  G  YF SM  D GI P  +H+ C+I
Sbjct: 451 LALFSEMVNKGLFRPDDITFVGVLSACTQAGLVDLGHQYFRSMIQDYGISPKLQHYGCMI 510

Query: 463 ELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSA 522
           +LLA+A   ++    ++ M  E D  +W +L   C+ HG ++ G  V ++L    P+++ 
Sbjct: 511 DLLARAEKFEEAEILMKNMEMEPDGAIWGSLLSACKAHGRVEFGEYVAERLFQLEPENAG 570

Query: 523 THGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDV 582
              LLS+IY+  G+   V ++R  +N++  KK    + IEI+  VH F V D  HP  + 
Sbjct: 571 AFVLLSNIYAGAGRWDDVARIRTRLNDKGMKKVPGCTSIEIDGDVHEFLVGDKFHPECNN 630

Query: 583 LYSVLEQLAGQMGEDA 598
           +Y +L ++   + E+ 
Sbjct: 631 IYKMLNEVDKLLEENG 646



 Score =  182 bits (463), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 115/407 (28%), Positives = 205/407 (50%), Gaps = 8/407 (1%)

Query: 133 GMMKHARNLFDNMAER---DVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFA 189
           G + +A +LF+   +    +V  WN++I GY+ S +    L  +  +  + +  N  +F 
Sbjct: 76  GDLSYALSLFEENQQHHKHNVFIWNSLIRGYSLSSSPLSSLHLFSRMLYYGVQPNSHTFP 135

Query: 190 GILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDAR 249
            +   C K +     +Q+H   L      N  + +S++  YA  GE+  AR +FD++  R
Sbjct: 136 FLFKSCTKAKATHEGKQLHAHALKLALHFNPHVHTSVIHMYASVGEMDFARLVFDKSSLR 195

Query: 250 DVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMM 309
           D +++T +++GY   G ++ A +LF+E+P K+ VSW  +I+GY ++G  ++A+  F  M 
Sbjct: 196 DAVSFTALITGYVSQGCLDDARRLFDEIPVKDVVSWNAMISGYVQSGRFEEAIVCFYEMQ 255

Query: 310 ILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLN 369
              + PN+ T    L AC    S + GK +  ++    F SN  + ++LIDMY KCG  +
Sbjct: 256 EANVLPNKSTMVVVLSACGHTRSGELGKWIGSWVRDNGFGSNLQLTNALIDMYCKCGETD 315

Query: 370 DGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNAC 429
             R++FD  + K+  + WNTMI   +     E+A+ LF  M+RS+VKP+ +T   IL+AC
Sbjct: 316 IARELFDGIEEKD-VISWNTMIGGYSYLSLYEEALALFEVMLRSNVKPNDVTFLGILHAC 374

Query: 430 THSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYL 489
              G +  G      +  +L    N      LI++ A+ GC +        M +  +   
Sbjct: 375 ACLGALDLGKWVHAYIDKNLRNSSNASLWTSLIDMYAKCGCIEAAERVFRSM-HSRNLAS 433

Query: 490 WNALHGVCRIHGNIDMGRKVVDQLIDQN---PQSSATHGLLSSIYSA 533
           WNA+     +HG+ +    +  +++++    P      G+LS+   A
Sbjct: 434 WNAMLSGFAMHGHAERALALFSEMVNKGLFRPDDITFVGVLSACTQA 480



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 102/398 (25%), Positives = 167/398 (41%), Gaps = 75/398 (18%)

Query: 18  NCLIQSFLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLH 77
           N +I  +   +  G+  EAI     + +  +     T+  +L  C  ++S +LGK +   
Sbjct: 232 NAMISGY---VQSGRFEEAIVCFYEMQEANVLPNKSTMVVVLSACGHTRSGELGKWIGSW 288

Query: 78  LKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKH 137
           ++     +    L+N LI MY KCG    AR++FD I  K++ S+N M+ GY+ L +   
Sbjct: 289 VRDNGFGSNLQ-LTNALIDMYCKCGETDIARELFDGIEEKDVISWNTMIGGYSYLSLY-- 345

Query: 138 ARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVK 197
                                        EE L  ++V+ R ++  N+ +F GIL  C  
Sbjct: 346 -----------------------------EEALALFEVMLRSNVKPNDVTFLGILHACAC 376

Query: 198 LEELKLTRQVHGQV---LVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTW 254
           L  L L + VH  +   L     SN  + +S++D YAKCG +  A R+F    +R++ +W
Sbjct: 377 LGALDLGKWVHAYIDKNLRNS--SNASLWTSLIDMYAKCGCIEAAERVFRSMHSRNLASW 434

Query: 255 TTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIR 314
             M+SG+A  G  E A  LF+EM  K               GL                R
Sbjct: 435 NAMLSGFAMHGHAERALALFSEMVNK---------------GL---------------FR 464

Query: 315 PNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIV-MSSLIDMYSKCGCLNDGRQ 373
           P+  TF   L AC     +  G Q    +I+    S  +     +ID+ ++     +   
Sbjct: 465 PDDITFVGVLSACTQAGLVDLGHQYFRSMIQDYGISPKLQHYGCMIDLLARAEKFEEAEI 524

Query: 374 VFDLTDNKENSMLWNTMISALTQHGYDE----QAIRLF 407
           +    + + +  +W +++SA   HG  E     A RLF
Sbjct: 525 LMKNMEMEPDGAIWGSLLSACKAHGRVEFGEYVAERLF 562



 Score =  105 bits (262), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 105/440 (23%), Positives = 174/440 (39%), Gaps = 108/440 (24%)

Query: 192 LTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVD--AYAKCGELSDARRLFDETDAR 249
           L +  K + +   +Q+H  ++ TG  + V + S ++   A +  G+LS A  LF+E    
Sbjct: 32  LNLLEKCKNINTFKQIHSLIIKTGLNNTVFVQSKLIHFCAVSPSGDLSYALSLFEEN--- 88

Query: 250 DVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMM 309
                                     +  + N   W +LI GY+ +     +L LF+RM+
Sbjct: 89  -------------------------QQHHKHNVFIWNSLIRGYSLSSSPLSSLHLFSRML 123

Query: 310 ILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKC---- 365
              ++PN HTF     +C    +   GKQ+H   ++     N  V +S+I MY+      
Sbjct: 124 YYGVQPNSHTFPFLFKSCTKAKATHEGKQLHAHALKLALHFNPHVHTSVIHMYASVGEMD 183

Query: 366 ---------------------------GCLNDGRQVFDLTDNKENSMLWNTMISALTQHG 398
                                      GCL+D R++FD    K+  + WN MIS   Q G
Sbjct: 184 FARLVFDKSSLRDAVSFTALITGYVSQGCLDDARRLFDEIPVKD-VVSWNAMISGYVQSG 242

Query: 399 YDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHH 458
             E+AI  F++M  ++V P+K T+ V+L+AC H+   + G  +  S   D G   N +  
Sbjct: 243 RFEEAIVCFYEMQEANVLPNKSTMVVVLSACGHTRSGELG-KWIGSWVRDNGFGSNLQLT 301

Query: 459 ACLIELLAQAGCSD---QLMNQLEKMPYEHDSYLWNALHG-------------------- 495
             LI++  + G +D   +L + +E    E D   WN + G                    
Sbjct: 302 NALIDMYCKCGETDIARELFDGIE----EKDVISWNTMIGGYSYLSLYEEALALFEVMLR 357

Query: 496 ---------------VCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLV 540
                           C   G +D+G K V   ID+N ++S+   L +S+     K   +
Sbjct: 358 SNVKPNDVTFLGILHACACLGALDLG-KWVHAYIDKNLRNSSNASLWTSLIDMYAKCGCI 416

Query: 541 EKVRQLINERQFKKEQAISW 560
           E   ++   R        SW
Sbjct: 417 EAAERVF--RSMHSRNLASW 434



 Score = 45.4 bits (106), Expect = 0.085,   Method: Compositional matrix adjust.
 Identities = 48/201 (23%), Positives = 84/201 (41%), Gaps = 9/201 (4%)

Query: 317 QHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDM--YSKCGCLNDGRQV 374
           QH + + L  C +I + K   Q+H  +I+T   +   V S LI     S  G L+    +
Sbjct: 28  QHPYLNLLEKCKNINTFK---QIHSLIIKTGLNNTVFVQSKLIHFCAVSPSGDLSYALSL 84

Query: 375 FDLTD--NKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHS 432
           F+     +K N  +WN++I   +       ++ LF  M+   V+P+  T   +  +CT +
Sbjct: 85  FEENQQHHKHNVFIWNSLIRGYSLSSSPLSSLHLFSRMLYYGVQPNSHTFPFLFKSCTKA 144

Query: 433 GLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNA 492
               EG     +    L +  N   H  +I + A  G  D      +K     D+  + A
Sbjct: 145 KATHEG-KQLHAHALKLALHFNPHVHTSVIHMYASVGEMDFARLVFDKSSLR-DAVSFTA 202

Query: 493 LHGVCRIHGNIDMGRKVVDQL 513
           L       G +D  R++ D++
Sbjct: 203 LITGYVSQGCLDDARRLFDEI 223


>gi|226529055|ref|NP_001142025.1| uncharacterized protein LOC100274179 [Zea mays]
 gi|194706828|gb|ACF87498.1| unknown [Zea mays]
          Length = 570

 Score =  330 bits (847), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 173/477 (36%), Positives = 280/477 (58%), Gaps = 4/477 (0%)

Query: 116 VKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKV 175
           V  +F  N +L  YA+ G +  +R  FD MA R+VVSWN+MI GYA++G   E    +  
Sbjct: 77  VGQVFVANALLHSYASAGSLGDSRRFFDEMAGRNVVSWNSMIGGYAQAGDTREACALFGE 136

Query: 176 LRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGE 235
           +RR     +EF+ A +L  C +   L+  R VH  +LV+G   ++++  ++VD Y+KCG+
Sbjct: 137 MRRQGFLGDEFTLASLLLACSQEGNLEFGRLVHCLMLVSGSPVDLILGGALVDMYSKCGD 196

Query: 236 LSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRN 295
           L  ARR F+    + V++WT+M+    K G +++A   F+ MPE+N VSW T+I+ Y + 
Sbjct: 197 LCMARRCFEMMPIKSVVSWTSMLCAQTKHGSVDAARCWFDHMPERNTVSWNTMISCYVQR 256

Query: 296 GLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTI-V 354
           G   +AL+L+ +M      P++ T    L AC  I  L  GK VH   IR N  +  I +
Sbjct: 257 GQYHEALDLYKQMQSHGPAPDEATLVPVLSACGRIGDLTVGKMVH-LYIRDNIHNPDISL 315

Query: 355 MSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSS 414
           ++SL+DMY+KCG ++   ++F    N+ N + WN +I  L  HG    AI  F  MVR++
Sbjct: 316 INSLLDMYAKCGQVDTAIRLFREMCNR-NVVSWNVIIGGLAMHGRALDAITFFRSMVRNT 374

Query: 415 VKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQL 474
             PD IT   +L++C+H GL++ G  YFESM H   +    EH+AC+++LL + G  ++ 
Sbjct: 375 -SPDGITFVALLSSCSHGGLLETGQHYFESMRHVYNVKHEVEHYACMVDLLGRRGHLEKA 433

Query: 475 MNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSAL 534
           +  +++MP + D  +W AL G CRIHGN+ +G++V+ QL++    S     L+S++    
Sbjct: 434 VCLIKEMPMKPDVVVWGALLGACRIHGNVKIGKQVIKQLLELEGISGGLFVLISNLLYET 493

Query: 535 GKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLA 591
            +   ++++R+L+ ER  +K+  +S IEI N +H F V D  H     +Y+V++QL+
Sbjct: 494 NQWEDMKRLRKLMKERGTRKDMGVSSIEINNSIHEFGVEDIRHESSSEIYAVVDQLS 550



 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 102/394 (25%), Positives = 171/394 (43%), Gaps = 69/394 (17%)

Query: 141 LFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEE 200
           +FD + + D V +NT+   Y  S    E L+ ++ + R  +  NEF+   ++  C + + 
Sbjct: 1   MFDGILDPDRVMYNTITRAYCNSDCPREALRLHRCMLRRGVLPNEFTLPFVVKACTRAQA 60

Query: 201 LKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSG 260
                 VHG  L  GF+  V ++++++ +YA  G L D+RR FDE   R+V++W +M+ G
Sbjct: 61  WDNALAVHGVALKLGFVGQVFVANALLHSYASAGSLGDSRRFFDEMAGRNVVSWNSMIGG 120

Query: 261 YAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTF 320
           YA+ GD   A  LF EM  +  +                                ++ T 
Sbjct: 121 YAQAGDTREACALFGEMRRQGFLG-------------------------------DEFTL 149

Query: 321 SSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDN 380
           +S L AC+   +L+ G+ VH  ++ +    + I+  +L+DMYSKCG L   R+ F++   
Sbjct: 150 ASLLLACSQEGNLEFGRLVHCLMLVSGSPVDLILGGALVDMYSKCGDLCMARRCFEMMPI 209

Query: 381 K------------------------------ENSMLWNTMISALTQHGYDEQAIRLFHDM 410
           K                               N++ WNTMIS   Q G   +A+ L+  M
Sbjct: 210 KSVVSWTSMLCAQTKHGSVDAARCWFDHMPERNTVSWNTMISCYVQRGQYHEALDLYKQM 269

Query: 411 VRSSVKPDKITLAVILNACTHSGLVQEGLT---YFESMTHDLGIIPNQEHHACLIELLAQ 467
                 PD+ TL  +L+AC   G +  G     Y     H+    P+      L+++ A+
Sbjct: 270 QSHGPAPDEATLVPVLSACGRIGDLTVGKMVHLYIRDNIHN----PDISLINSLLDMYAK 325

Query: 468 AGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHG 501
            G  D  +    +M    +   WN + G   +HG
Sbjct: 326 CGQVDTAIRLFREM-CNRNVVSWNVIIGGLAMHG 358



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 107/408 (26%), Positives = 177/408 (43%), Gaps = 67/408 (16%)

Query: 31  GQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFL 90
           G   EA +    + ++G      TLA +L  C++  +L+ G+ VH  L L         L
Sbjct: 125 GDTREACALFGEMRRQGFLGDEFTLASLLLACSQEGNLEFGRLVHC-LMLVSGSPVDLIL 183

Query: 91  SNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDV 150
              L+ MY KCG    AR+ F+ +P+K++ S+ +ML      G +  AR  FD+M ER+ 
Sbjct: 184 GGALVDMYSKCGDLCMARRCFEMMPIKSVVSWTSMLCAQTKHGSVDAARCWFDHMPERNT 243

Query: 151 VSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQ 210
           VSWNTMI  Y + G   E L  YK ++    + +E +   +L+ C ++ +L + + VH  
Sbjct: 244 VSWNTMISCYVQRGQYHEALDLYKQMQSHGPAPDEATLVPVLSACGRIGDLTVGKMVHLY 303

Query: 211 VLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESA 270
           +       ++ + +S++D YAKCG++  A RLF E   R+V++W  ++ G A  G    A
Sbjct: 304 IRDNIHNPDISLINSLLDMYAKCGQVDTAIRLFREMCNRNVVSWNVIIGGLAMHGRALDA 363

Query: 271 SKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASI 330
              F                                R M+    P+  TF + L +C+  
Sbjct: 364 ITFF--------------------------------RSMVRNTSPDGITFVALLSSCS-- 389

Query: 331 VSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTM 390
                    HG L+ T                         R V+++    E+   +  M
Sbjct: 390 ---------HGGLLETGQHY-----------------FESMRHVYNVKHEVEH---YACM 420

Query: 391 ISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEG 438
           +  L + G+ E+A+ L  +M    +KPD +    +L AC   G V+ G
Sbjct: 421 VDLLGRRGHLEKAVCLIKEM---PMKPDVVVWGALLGACRIHGNVKIG 465



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 67/257 (26%), Positives = 115/257 (44%), Gaps = 15/257 (5%)

Query: 273 LFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVS 332
           +F+ + + + V + T+   Y  +   ++AL L   M+   + PN+ T    + AC    +
Sbjct: 1   MFDGILDPDRVMYNTITRAYCNSDCPREALRLHRCMLRRGVLPNEFTLPFVVKACTRAQA 60

Query: 333 LKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMIS 392
             +   VHG  ++  F     V ++L+  Y+  G L D R+ FD    + N + WN+MI 
Sbjct: 61  WDNALAVHGVALKLGFVGQVFVANALLHSYASAGSLGDSRRFFDEMAGR-NVVSWNSMIG 119

Query: 393 ALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGII 452
              Q G   +A  LF +M R     D+ TLA +L AC+     QEG   F  + H L ++
Sbjct: 120 GYAQAGDTREACALFGEMRRQGFLGDEFTLASLLLACS-----QEGNLEFGRLVHCLMLV 174

Query: 453 PNQEHH----ACLIELLAQAGCSDQLMNQ--LEKMPYEHDSYLWNALHGVCRIHGNIDMG 506
                       L+++ ++  C D  M +   E MP +     W ++      HG++D  
Sbjct: 175 SGSPVDLILGGALVDMYSK--CGDLCMARRCFEMMPIK-SVVSWTSMLCAQTKHGSVDAA 231

Query: 507 RKVVDQLIDQNPQSSAT 523
           R   D + ++N  S  T
Sbjct: 232 RCWFDHMPERNTVSWNT 248



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 48/172 (27%), Positives = 80/172 (46%), Gaps = 13/172 (7%)

Query: 12  RKNLPNNCLIQSFLSLISKGQLSEAISSLDLLAQRGIRLPAE---TLAFILQQCAESKSL 68
           R  +  N +I  +   + +GQ  EA   LDL  Q     PA    TL  +L  C     L
Sbjct: 241 RNTVSWNTMISCY---VQRGQYHEA---LDLYKQMQSHGPAPDEATLVPVLSACGRIGDL 294

Query: 69  KLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSG 128
            +GK VHL+++      P   L N L+ MY KCG    A ++F ++  +N+ S+N ++ G
Sbjct: 295 TVGKMVHLYIR-DNIHNPDISLINSLLDMYAKCGQVDTAIRLFREMCNRNVVSWNVIIGG 353

Query: 129 YANLGMMKHARNLFDNMAER---DVVSWNTMIIGYAKSGAVEEGLKFYKVLR 177
            A  G    A   F +M      D +++  ++   +  G +E G  +++ +R
Sbjct: 354 LAMHGRALDAITFFRSMVRNTSPDGITFVALLSSCSHGGLLETGQHYFESMR 405


>gi|359476084|ref|XP_002282081.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g20540-like [Vitis vinifera]
          Length = 541

 Score =  330 bits (847), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 167/460 (36%), Positives = 266/460 (57%), Gaps = 6/460 (1%)

Query: 136 KHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFS-----ISCNEFSFAG 190
           ++A  LF  +A+ +   +N MI  Y  +      +  YK +   S     I  ++F+F  
Sbjct: 63  EYANLLFKRVADPNAFLYNAMIRAYKHNKVYVLAITVYKQMLGHSHGENPIFPDKFTFPF 122

Query: 191 ILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARD 250
           ++  C  L    L +QVHG V   G  SN V+ +S+V+ Y KC  L DA ++F+E   RD
Sbjct: 123 VVKSCAGLMCYDLGKQVHGHVFKFGQKSNTVVENSLVEMYVKCDSLDDAHKVFEEMTERD 182

Query: 251 VLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMI 310
            ++W T++SG+ +LG M  A  +F EM +K   SWT +++GY R G    ALE F RM +
Sbjct: 183 AVSWNTLISGHVRLGQMRRARAIFEEMQDKTIFSWTAIVSGYARIGCYADALEFFRRMQM 242

Query: 311 LRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLND 370
           + I P++ +  S L ACA + +L+ GK +H +  +  F  N  V ++LI+MY+KCG +++
Sbjct: 243 VGIEPDEISLVSVLPACAQLGALELGKWIHFYADKAGFLRNICVCNALIEMYAKCGSIDE 302

Query: 371 GRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACT 430
           GR++FD   N+ + + W+TMI  L  HG   +AI LF +M ++ ++P+ IT   +L+AC 
Sbjct: 303 GRRLFDQM-NERDVISWSTMIVGLANHGRAHEAIELFQEMQKAKIEPNIITFVGLLSACA 361

Query: 431 HSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLW 490
           H+GL+ EGL YFESM  D  I P  EH+ CL+ LL  +G  DQ +  ++KMP + DS +W
Sbjct: 362 HAGLLNEGLRYFESMKRDYNIEPGVEHYGCLVNLLGLSGRLDQALELIKKMPMKPDSAIW 421

Query: 491 NALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINER 550
            +L   CR H N+++    ++ L++  P  +  + LLS++Y+ LGK   V ++R+L+  +
Sbjct: 422 GSLLSSCRSHSNLEIAVIAMEHLLELEPADTGNYVLLSNLYADLGKWDGVSRMRKLMRSK 481

Query: 551 QFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQL 590
             KK    S IE++N V  F+  D   P    +Y VL+ L
Sbjct: 482 SMKKTPGCSSIEVDNMVQEFASGDDSKPFSKAIYRVLKLL 521



 Score =  185 bits (470), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 107/353 (30%), Positives = 177/353 (50%), Gaps = 35/353 (9%)

Query: 54  TLAFILQQCAESKSLKLGKRVHLHL-KLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFD 112
           T  F+++ CA      LGK+VH H+ K  Q+    T + N L+ MY KC S  DA KVF+
Sbjct: 119 TFPFVVKSCAGLMCYDLGKQVHGHVFKFGQKSN--TVVENSLVEMYVKCDSLDDAHKVFE 176

Query: 113 KIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKF 172
           ++  ++  S+N ++SG+  LG M+ AR +F+ M ++ + SW  ++ GYA+ G   + L+F
Sbjct: 177 EMTERDAVSWNTLISGHVRLGQMRRARAIFEEMQDKTIFSWTAIVSGYARIGCYADALEF 236

Query: 173 YKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAK 232
           ++ ++   I  +E S   +L  C +L  L+L + +H      GFL N+ + +++++ YAK
Sbjct: 237 FRRMQMVGIEPDEISLVSVLPACAQLGALELGKWIHFYADKAGFLRNICVCNALIEMYAK 296

Query: 233 CGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGY 292
           CG + + RRLFD+ + RDV++W+TM+ G A  G    A +LF EM               
Sbjct: 297 CGSIDEGRRLFDQMNERDVISWSTMIVGLANHGRAHEAIELFQEM--------------- 341

Query: 293 TRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRT-NFRSN 351
                 QKA          +I PN  TF   L ACA    L  G +    + R  N    
Sbjct: 342 ------QKA----------KIEPNIITFVGLLSACAHAGLLNEGLRYFESMKRDYNIEPG 385

Query: 352 TIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAI 404
                 L+++    G L+   ++      K +S +W +++S+   H   E A+
Sbjct: 386 VEHYGCLVNLLGLSGRLDQALELIKKMPMKPDSAIWGSLLSSCRSHSNLEIAV 438



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 44/157 (28%), Positives = 81/157 (51%), Gaps = 15/157 (9%)

Query: 31  GQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFL 90
           G  ++A+     +   GI     +L  +L  CA+  +L+LGK +H +           FL
Sbjct: 228 GCYADALEFFRRMQMVGIEPDEISLVSVLPACAQLGALELGKWIHFY------ADKAGFL 281

Query: 91  S-----NHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNM 145
                 N LI MY KCGS  + R++FD++  +++ S++ M+ G AN G    A  LF  M
Sbjct: 282 RNICVCNALIEMYAKCGSIDEGRRLFDQMNERDVISWSTMIVGLANHGRAHEAIELFQEM 341

Query: 146 A----ERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRR 178
                E +++++  ++   A +G + EGL++++ ++R
Sbjct: 342 QKAKIEPNIITFVGLLSACAHAGLLNEGLRYFESMKR 378


>gi|449493040|ref|XP_004159175.1| PREDICTED: putative pentatricopeptide repeat-containing protein
            At3g18840-like [Cucumis sativus]
          Length = 1096

 Score =  330 bits (847), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 184/550 (33%), Positives = 307/550 (55%), Gaps = 6/550 (1%)

Query: 48   IRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDA 107
            IR+   TL  +L   A+   +  GK++H  + L      T F ++ LI MY KCG   +A
Sbjct: 542  IRIDEFTLITMLNLTAKLCVISYGKQLHSFM-LKTANDLTVFAASSLIDMYSKCGFFKEA 600

Query: 108  RKVFDKI-PVKNLFSYNNMLSGYANLGMMKHARNLF-DNMAERDVVSWNTMIIGYAKSGA 165
             +V+     V +  S N M++     G +  A +LF   + + DVV+WNTMI G+ ++G 
Sbjct: 601  CRVYYGCGEVVDSVSRNAMVAACCREGEIDVALDLFWKELEQNDVVAWNTMISGFVQNGY 660

Query: 166  VEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSS 225
             EE LK +  +    +  NE +FA +L+ C  L  LKL ++VH  VL    ++N  I S 
Sbjct: 661  EEESLKLFVRMADEKVGWNEHTFASVLSACSNLRSLKLGKEVHAYVLKNRLIANPFICSG 720

Query: 226  IVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSW 285
            +VD Y KC  +  A  +  E   ++V + T+M+ GY+  G+M  A KLF+ + EKN V W
Sbjct: 721  LVDVYCKCNNMRYAESVNSELRMQNVYSITSMIVGYSSQGNMAEARKLFDSLDEKNSVVW 780

Query: 286  TTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIR 345
            T L  GY +    +   EL +        P+     S + ACA   +L  GKQ+H +++R
Sbjct: 781  TALFFGYVKLQQCEAVFELLSEYRKEAKVPDVLILISIIGACAIQAALVPGKQIHSYMLR 840

Query: 346  TNFRSNTIVMSSLIDMYSKCGCLNDGRQVF-DLTDNKENSMLWNTMISALTQHGYDEQAI 404
               + +T + SSL+DMYSKCG +    ++F ++TD  ++S+++N MI+    HG++ +A+
Sbjct: 841  AGIKLDTKLTSSLVDMYSKCGSIIYAERIFREVTD--KDSIIYNIMIAGYAHHGWENEAV 898

Query: 405  RLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIEL 464
            +LF +MV+   KPD IT   +L+AC H GLV+ G  +F+SM++D  I P  +H+AC+I+L
Sbjct: 899  QLFKEMVKHGFKPDAITFVALLSACRHGGLVELGEHFFDSMSNDYNICPEIDHYACMIDL 958

Query: 465  LAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATH 524
              +A   D+ +  + K+P + D+ +W A    CRI+GN ++ RK  D+L+    ++ + +
Sbjct: 959  YGRANQLDKALEFMRKIPIQLDAVIWGAFLNACRINGNAELARKAEDELLVIEGENGSRY 1018

Query: 525  GLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLY 584
              L+++Y+A G    + ++R+ +  ++ KK    SW+ +E+K H F   D  H   + +Y
Sbjct: 1019 VQLANVYAAEGNWEEMGRIRKKMKGKEVKKNAGCSWVFVESKFHVFISGDRFHSKNEAIY 1078

Query: 585  SVLEQLAGQM 594
            S L  L  ++
Sbjct: 1079 STLASLTDEL 1088



 Score =  209 bits (532), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 146/519 (28%), Positives = 255/519 (49%), Gaps = 71/519 (13%)

Query: 64  ESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYN 123
           E K LK G   HL   +    TPT F+SN LI+ Y K G   DA+K+FD++P +N+FS+N
Sbjct: 423 EMKHLKHGLLCHLQ-GIKSGFTPTIFMSNQLITFYAKHGLLNDAQKLFDEMPERNVFSWN 481

Query: 124 NMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKS-GAVEEGLKFYKVLRRFS-- 180
            +++ Y     ++ AR LFD+   +D+V++N+M+ GYA+S G   + L F+  ++     
Sbjct: 482 AIIAAYVKSQNLRQARALFDSAVCKDLVTYNSMLSGYARSDGYQGQALGFFMEMQTAPDM 541

Query: 181 ISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDAR 240
           I  +EF+   +L +  KL  +   +Q+H  +L T     V  +SS++D Y+KCG   +A 
Sbjct: 542 IRIDEFTLITMLNLTAKLCVISYGKQLHSFMLKTANDLTVFAASSLIDMYSKCGFFKEAC 601

Query: 241 RLFDET-DARDVLTWTTMVSGYAKLGDMESASKLF-NEMPEKNPVSWTTLIAGYTRNGLG 298
           R++    +  D ++   MV+   + G+++ A  LF  E+ + + V+W T+I+G+ +NG  
Sbjct: 602 RVYYGCGEVVDSVSRNAMVAACCREGEIDVALDLFWKELEQNDVVAWNTMISGFVQNGYE 661

Query: 299 QKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSL 358
           +++L+LF RM   ++  N+HTF+S L AC+++ SLK GK+VH ++++    +N  + S L
Sbjct: 662 EESLKLFVRMADEKVGWNEHTFASVLSACSNLRSLKLGKEVHAYVLKNRLIANPFICSGL 721

Query: 359 IDMYSKC-------------------------------GCLNDGRQVFDLTDNKENSMLW 387
           +D+Y KC                               G + + R++FD  D K NS++W
Sbjct: 722 VDVYCKCNNMRYAESVNSELRMQNVYSITSMIVGYSSQGNMAEARKLFDSLDEK-NSVVW 780

Query: 388 NTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACT-----------HSGLVQ 436
             +     +    E    L  +  + +  PD + L  I+ AC            HS +++
Sbjct: 781 TALFFGYVKLQQCEAVFELLSEYRKEAKVPDVLILISIIGACAIQAALVPGKQIHSYMLR 840

Query: 437 EGLTYFESMTHDL-------GIIPNQEH------------HACLIELLAQAGCSD---QL 474
            G+     +T  L       G I   E             +  +I   A  G  +   QL
Sbjct: 841 AGIKLDTKLTSSLVDMYSKCGSIIYAERIFREVTDKDSIIYNIMIAGYAHHGWENEAVQL 900

Query: 475 MNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQL 513
             ++ K  ++ D+  + AL   CR  G +++G    D +
Sbjct: 901 FKEMVKHGFKPDAITFVALLSACRHGGLVELGEHFFDSM 939



 Score =  132 bits (331), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 82/295 (27%), Positives = 142/295 (48%), Gaps = 8/295 (2%)

Query: 18  NCLIQSFLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLH 77
           N +I  F   +  G   E++     +A   +     T A +L  C+  +SLKLGK VH +
Sbjct: 649 NTMISGF---VQNGYEEESLKLFVRMADEKVGWNEHTFASVLSACSNLRSLKLGKEVHAY 705

Query: 78  LKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKH 137
           + L  R     F+ + L+ +Y KC +   A  V  ++ ++N++S  +M+ GY++ G M  
Sbjct: 706 V-LKNRLIANPFICSGLVDVYCKCNNMRYAESVNSELRMQNVYSITSMIVGYSSQGNMAE 764

Query: 138 ARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVK 197
           AR LFD++ E++ V W  +  GY K    E   +     R+ +   +      I+  C  
Sbjct: 765 ARKLFDSLDEKNSVVWTALFFGYVKLQQCEAVFELLSEYRKEAKVPDVLILISIIGACAI 824

Query: 198 LEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTM 257
              L   +Q+H  +L  G   +  ++SS+VD Y+KCG +  A R+F E   +D + +  M
Sbjct: 825 QAALVPGKQIHSYMLRAGIKLDTKLTSSLVDMYSKCGSIIYAERIFREVTDKDSIIYNIM 884

Query: 258 VSGYAKLGDMESASKLFNEMP----EKNPVSWTTLIAGYTRNGLGQKALELFTRM 308
           ++GYA  G    A +LF EM     + + +++  L++     GL +     F  M
Sbjct: 885 IAGYAHHGWENEAVQLFKEMVKHGFKPDAITFVALLSACRHGGLVELGEHFFDSM 939


>gi|347954524|gb|AEP33762.1| organelle transcript processing 82, partial [Hesperis matronalis]
          Length = 672

 Score =  330 bits (847), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 183/539 (33%), Positives = 296/539 (54%), Gaps = 43/539 (7%)

Query: 54  TLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDK 113
           T  F+L+ CA+SK+ K G+++H H+ L        ++   LISMY + G   DA+KVFD+
Sbjct: 77  TFPFLLKSCAKSKTFKEGQQIHGHV-LKLGFDLDLYVHTSLISMYAQNGRLEDAQKVFDR 135

Query: 114 IPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFY 173
              +++ SY  +++GYA+ G ++ A+ +FD +  +DVVSWN MI GYA++G  ++ L+ +
Sbjct: 136 SSHRDVVSYTALITGYASRGYIESAQKMFDEIPIKDVVSWNAMISGYAETGNYKKALELF 195

Query: 174 KVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKC 233
           K + + ++  +E + A +++ C +   ++L RQVH  +   GF SN+ I ++++D Y+KC
Sbjct: 196 KEMMKTNVKPDESTMATVVSACAQSGSIELGRQVHSWINDHGFGSNLKIVNALIDLYSKC 255

Query: 234 GELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYT 293
           GE+                               E+A +L   +  K+ +SW TLI GYT
Sbjct: 256 GEV-------------------------------ETACELLEGLSNKDVISWNTLIGGYT 284

Query: 294 RNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFL-------IRT 346
              L ++AL LF  M+     PN  T  S L ACA + ++  G+ +H ++       + T
Sbjct: 285 HMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKKLKGVVVT 344

Query: 347 NFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRL 406
           N  S   + +SLIDMY+KCG ++   QV D +    +   WN MI     HG    A  +
Sbjct: 345 NASS---LRTSLIDMYAKCGDIDAAPQVSDSSAFNRSLSTWNAMIFGFAMHGRANAAFDI 401

Query: 407 FHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLA 466
           F  M ++ ++PD IT   +L+AC+HSG++  G   F SM  D  I P  EH+ C+I+LL 
Sbjct: 402 FSRMRKNGIEPDDITFVGLLSACSHSGMLDLGRNIFRSMRQDYNITPKLEHYGCMIDLLG 461

Query: 467 QAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGL 526
            +G   +    +  MP E D  +W +L   C+IHGN+++G     +LI   P++  ++ L
Sbjct: 462 HSGLFKEAEEMINTMPMEPDGVIWCSLLKACKIHGNLELGESFAKKLIKIEPENPGSYVL 521

Query: 527 LSSIYSALGKGRLVEKVRQLINERQFKKE-QAISWIEIENKVHAFSVSDSLHPMRDVLY 584
           LS+IY+  GK   V K+R L+N++  KK+    S IEI++ VH F + D LHP    +Y
Sbjct: 522 LSNIYATAGKWNEVXKIRTLLNDKGMKKKVPGCSSIEIDSVVHEFIIGDKLHPQNREIY 580



 Score =  226 bits (575), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 126/400 (31%), Positives = 215/400 (53%), Gaps = 6/400 (1%)

Query: 135 MKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTI 194
           + +A ++F+ + E + + WN M  G+A S      LK Y V+    +  N F+F  +L  
Sbjct: 25  LPYAISVFETIPEPNQLIWNIMFRGHALSSDPVSALKLYVVMISLGLLPNFFTFPFLLKS 84

Query: 195 CVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTW 254
           C K +  K  +Q+HG VL  GF  ++ + +S++  YA+ G L DA+++FD +  RDV+++
Sbjct: 85  CAKSKTFKEGQQIHGHVLKLGFDLDLYVHTSLISMYAQNGRLEDAQKVFDRSSHRDVVSY 144

Query: 255 TTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIR 314
           T +++GYA  G +ESA K+F+E+P K+ VSW  +I+GY   G  +KALELF  MM   ++
Sbjct: 145 TALITGYASRGYIESAQKMFDEIPIKDVVSWNAMISGYAETGNYKKALELFKEMMKTNVK 204

Query: 315 PNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQV 374
           P++ T ++ + ACA   S++ G+QVH ++    F SN  ++++LID+YSKCG +    ++
Sbjct: 205 PDESTMATVVSACAQSGSIELGRQVHSWINDHGFGSNLKIVNALIDLYSKCGEVETACEL 264

Query: 375 FDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGL 434
            +   NK+  + WNT+I   T     ++A+ LF +M+RS   P+ +T+  IL AC H G 
Sbjct: 265 LEGLSNKD-VISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGA 323

Query: 435 VQEGL---TYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWN 491
           +  G     Y +     + +         LI++ A+ G  D      +   +      WN
Sbjct: 324 IDIGRWIHVYIDKKLKGVVVTNASSLRTSLIDMYAKCGDIDAAPQVSDSSAFNRSLSTWN 383

Query: 492 ALHGVCRIHGNIDMGRKVVDQLIDQN--PQSSATHGLLSS 529
           A+     +HG  +    +  ++      P      GLLS+
Sbjct: 384 AMIFGFAMHGRANAAFDIFSRMRKNGIEPDDITFVGLLSA 423



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 80/376 (21%), Positives = 152/376 (40%), Gaps = 73/376 (19%)

Query: 31  GQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFL 90
           G   +A+     + +  ++    T+A ++  CA+S S++LG++VH  +           +
Sbjct: 186 GNYKKALELFKEMMKTNVKPDESTMATVVSACAQSGSIELGRQVHSWIN-DHGFGSNLKI 244

Query: 91  SNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDV 150
            N LI +Y KCG    A ++ + +  K++ S+N ++ GY ++ + K A  LF  M     
Sbjct: 245 VNALIDLYSKCGEVETACELLEGLSNKDVISWNTLIGGYTHMNLYKEALLLFQEM----- 299

Query: 151 VSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQ 210
                      +SG                   N+ +   IL  C  L  + + R +H  
Sbjct: 300 ----------LRSGETP----------------NDVTMLSILPACAHLGAIDIGRWIH-- 331

Query: 211 VLVTGFLSNVVIS------SSIVDAYAKCGELSDARRLFDETD-ARDVLTWTTMVSGYAK 263
           V +   L  VV++      +S++D YAKCG++  A ++ D +   R + TW  M+ G+A 
Sbjct: 332 VYIDKKLKGVVVTNASSLRTSLIDMYAKCGDIDAAPQVSDSSAFNRSLSTWNAMIFGFA- 390

Query: 264 LGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSC 323
                                          +G    A ++F+RM    I P+  TF   
Sbjct: 391 ------------------------------MHGRANAAFDIFSRMRKNGIEPDDITFVGL 420

Query: 324 LCACASIVSLKHGKQVHGFLIRT-NFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKE 382
           L AC+    L  G+ +   + +  N          +ID+    G   +  ++ +    + 
Sbjct: 421 LSACSHSGMLDLGRNIFRSMRQDYNITPKLEHYGCMIDLLGHSGLFKEAEEMINTMPMEP 480

Query: 383 NSMLWNTMISALTQHG 398
           + ++W +++ A   HG
Sbjct: 481 DGVIWCSLLKACKIHG 496


>gi|359487569|ref|XP_002277031.2| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
           mitochondrial-like [Vitis vinifera]
          Length = 703

 Score =  330 bits (845), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 187/569 (32%), Positives = 300/569 (52%), Gaps = 74/569 (13%)

Query: 92  NHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVV 151
           N +++ YF+     +AR +FDK+P +N  S+N ++SGY    M+  AR  FD M ER+VV
Sbjct: 51  NSMVAGYFQNNRPREARYLFDKMPERNTVSWNGLISGYVKNRMVSEARKAFDTMPERNVV 110

Query: 152 SWNTMIIGYAKSGAVEEGLK-FYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQ 210
           SW  M+ GY + G V E    F+++  +     N  S+  +L   +++  +   R +   
Sbjct: 111 SWTAMVRGYVQEGLVSEAETLFWQMPEK-----NVVSWTVMLGGLIQVRRIDEARGLFDI 165

Query: 211 VLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGD---- 266
           + V     +VV  ++++  Y + G L++AR LFDE   R+V++WTTM+SGY + G     
Sbjct: 166 MPV----KDVVARTNMISGYCQEGRLAEARELFDEMPRRNVISWTTMISGYVQNGQVDVA 221

Query: 267 ---------------------------MESASKLFNEMP--------------------- 278
                                      +E AS+LF+ MP                     
Sbjct: 222 RKLFEVMPEKNEVSWTAMLMGYTQGGRIEEASELFDAMPVKAVVACNAMILGFGQNGEVA 281

Query: 279 ----------EKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACA 328
                     EK+  +W+ +I  Y R G   +AL LF  M    ++ N  +  S L  CA
Sbjct: 282 KARQVFDQIREKDDGTWSAMIKVYERKGFEVEALNLFALMQREGVQSNFPSLISVLSVCA 341

Query: 329 SIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWN 388
           S+ SL HG+QVH  L+++ F S+  V S LI MY KCG L   RQ+FD    K+  M WN
Sbjct: 342 SLASLDHGRQVHAELVKSQFDSDVFVASVLITMYVKCGDLVKARQIFDRFSPKDIVM-WN 400

Query: 389 TMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHD 448
           ++I+   QHG  E+A+++FH+M  S +  D +T   +L+AC+++G V+EGL  FESM   
Sbjct: 401 SIITGYAQHGLVEEALQVFHEMCSSGMATDGVTFVGVLSACSYTGKVKEGLEIFESMKSK 460

Query: 449 LGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRK 508
             + P  EH+AC+++LL +AG  +  M+ ++KMP E D+ +W AL G CR H N+++   
Sbjct: 461 YLVEPKTEHYACMVDLLGRAGLVNDAMDLIQKMPVEADAIIWGALLGACRTHMNMNLAEV 520

Query: 509 VVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVH 568
              +L+   P+++  + LLS+IY++ G+   V ++R+ +  ++  K    SWIE+E +VH
Sbjct: 521 AAKKLLQLEPKNAGPYILLSNIYASKGRWGDVAELRRNMRVKKVSKSPGCSWIEVEKRVH 580

Query: 569 AFSVSDSL-HPMRDVLYSVLEQLAGQMGE 596
            F+   S  HP    +  +LE+L G + E
Sbjct: 581 MFTGGVSTKHPELSSIMKMLEKLDGMLRE 609



 Score = 95.9 bits (237), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 75/311 (24%), Positives = 141/311 (45%), Gaps = 53/311 (17%)

Query: 216 FLSNVVIS-SSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLF 274
           + ++V I+ +S +  YA+ G++  ARR+FDE   + +++W +MV+GY +      A  LF
Sbjct: 11  YCTSVAIAYNSQIARYARIGQIESARRVFDEMPDKGIVSWNSMVAGYFQNNRPREARYLF 70

Query: 275 NEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRM-------------------------M 309
           ++MPE+N VSW  LI+GY +N +  +A + F  M                          
Sbjct: 71  DKMPERNTVSWNGLISGYVKNRMVSEARKAFDTMPERNVVSWTAMVRGYVQEGLVSEAET 130

Query: 310 ILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLN 369
           +    P ++  S  +     ++ ++   +  G       + + +  +++I  Y + G L 
Sbjct: 131 LFWQMPEKNVVSWTV-MLGGLIQVRRIDEARGLFDIMPVK-DVVARTNMISGYCQEGRLA 188

Query: 370 DGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDK--ITLAVILN 427
           + R++FD    + N + W TMIS   Q+G  + A +LF       V P+K  ++   +L 
Sbjct: 189 EARELFDEMPRR-NVISWTTMISGYVQNGQVDVARKLFE------VMPEKNEVSWTAMLM 241

Query: 428 ACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELL-----AQAGCSDQLMNQLEKMP 482
             T  G ++E    F++M       P +   AC   +L      +   + Q+ +Q+    
Sbjct: 242 GYTQGGRIEEASELFDAM-------PVKAVVACNAMILGFGQNGEVAKARQVFDQIR--- 291

Query: 483 YEHDSYLWNAL 493
            E D   W+A+
Sbjct: 292 -EKDDGTWSAM 301



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 45/152 (29%), Positives = 86/152 (56%), Gaps = 5/152 (3%)

Query: 30  KGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTF 89
           KG   EA++   L+ + G++    +L  +L  CA   SL  G++VH  L  +Q  +   F
Sbjct: 308 KGFEVEALNLFALMQREGVQSNFPSLISVLSVCASLASLDHGRQVHAELVKSQFDS-DVF 366

Query: 90  LSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERD 149
           +++ LI+MY KCG  V AR++FD+   K++  +N++++GYA  G+++ A  +F  M    
Sbjct: 367 VASVLITMYVKCGDLVKARQIFDRFSPKDIVMWNSIITGYAQHGLVEEALQVFHEMCSSG 426

Query: 150 VVSWNTMIIGY----AKSGAVEEGLKFYKVLR 177
           + +     +G     + +G V+EGL+ ++ ++
Sbjct: 427 MATDGVTFVGVLSACSYTGKVKEGLEIFESMK 458


>gi|255559617|ref|XP_002520828.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223539959|gb|EEF41537.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 656

 Score =  329 bits (844), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 177/522 (33%), Positives = 294/522 (56%), Gaps = 22/522 (4%)

Query: 88  TFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAE 147
            F    L+S YFK G+  +A ++F+++P KN+ S+   + GYA  G +  AR++F+ M E
Sbjct: 144 VFSWTSLVSGYFKIGNVDEAMRLFNQMPEKNVVSWTTAVVGYAQNGFIDEARDIFNQMPE 203

Query: 148 RDVVSWNTMIIGYAKSGAVEEGLK-FYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQ 206
           +++++W  M+  Y ++  ++E  + FY++ +R     N +S+  +++ C+    L    Q
Sbjct: 204 KNIIAWTAMVKSYVENDEIDEAFELFYQMPQR-----NLYSWNIMISGCINANRLNEAIQ 258

Query: 207 VHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGD 266
           +   +       N V  +++V   A+ G +  AR+ FD    +D+  W  M++ Y   G 
Sbjct: 259 LFNSMP----QRNEVSWTTLVTGLARNGMMELARKYFDHMPTKDIAAWNAMITAYVDQGS 314

Query: 267 MESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCA 326
           M  AS LFN MPEKN VSW  LI GY RNG    +L     M+    +PN+ T +S L A
Sbjct: 315 MAEASNLFNLMPEKNIVSWNALIDGYARNGPESNSLRYLILMLRSNFKPNETTITSVLTA 374

Query: 327 CASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSML 386
           C SI+ L    Q HG +I   F  + ++ + L+  YS+CG +   R +FD  + K+  + 
Sbjct: 375 CDSILEL---MQAHGLVIHLGFEQDKVLANGLVTTYSRCGDVLSARFIFDQLEIKD-IVS 430

Query: 387 WNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMT 446
           W  MI A + HG    A+++F  M+RS  KPD IT   +L+AC+H+GLV++G   F+SM+
Sbjct: 431 WTAMILAYSNHGCGPHALQVFARMLRSGAKPDGITFVGLLSACSHAGLVKKGQMLFDSMS 490

Query: 447 HDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKM-PYEHDSYLWNALHGVCRIHGNIDM 505
              G+ P  EH++CL+++L +AG  ++ M  + +M P+E D  +  AL G CR+H ++ +
Sbjct: 491 CAYGVEPRAEHYSCLVDILGRAGEMNKAMKVVSEMPPHECDGAVLGALLGACRLHKDVGL 550

Query: 506 GRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIEN 565
              + ++LI++ P SS ++ LL++ Y+A GK     +VR+ + ER  KKE   S IE++ 
Sbjct: 551 ANHIGEKLIEKEPTSSGSYVLLANAYAACGKWNEFAEVRKEMKERNVKKEPGFSQIEVKG 610

Query: 566 KVHAFSVSDSLHPMRDVLYSVLEQ----LAGQMG---EDAPS 600
           K H F V D  HP  + +Y  L++    L  +MG   E +P+
Sbjct: 611 KSHVFFVRDRSHPQLEEIYLFLDEKLLPLMREMGYTPESSPA 652



 Score =  132 bits (333), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 99/403 (24%), Positives = 170/403 (42%), Gaps = 100/403 (24%)

Query: 86  PTTFLSNHLISMYFKCGSDVDARKVFDKIP----VKNLFSYNNMLSGYANLGMMKHARNL 141
           P TF S   ++  F      +  K+  +IP      + +  N  +S     G +K AR +
Sbjct: 14  PATFQSLRHLNRSFSSLKTPNPSKITTRIPFPVFASDTYESNVKISNLGLRGKVKEARKV 73

Query: 142 FDNMAERDVVSWNTMIIGYAKSGAVEEG-LKFYKVLRRFSISCNEFSFAGILTICVKLEE 200
           FD M  RD VS+ +MI  Y K+  + +  + F ++  R                      
Sbjct: 74  FDEMPRRDAVSYASMITVYLKNKDLPQAEILFREIPER---------------------- 111

Query: 201 LKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSG 260
                             NVV  S+++  Y + G L  AR++FD+   R+V +WT++VSG
Sbjct: 112 ------------------NVVADSAMISGYVRAGRLDKARQVFDQMVERNVFSWTSLVSG 153

Query: 261 YAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRI------- 313
           Y K+G+++ A +LFN+MPEKN VSWTT + GY +NG   +A ++F +M    I       
Sbjct: 154 YFKIGNVDEAMRLFNQMPEKNVVSWTTAVVGYAQNGFIDEARDIFNQMPEKNIIAWTAMV 213

Query: 314 --------------------RPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTI 353
                               + N ++++  +  C +   L    Q+   + + N  S T 
Sbjct: 214 KSYVENDEIDEAFELFYQMPQRNLYSWNIMISGCINANRLNEAIQLFNSMPQRNEVSWTT 273

Query: 354 VMSSL---------------------------IDMYSKCGCLNDGRQVFDLTDNKENSML 386
           +++ L                           I  Y   G + +   +F+L   K N + 
Sbjct: 274 LVTGLARNGMMELARKYFDHMPTKDIAAWNAMITAYVDQGSMAEASNLFNLMPEK-NIVS 332

Query: 387 WNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNAC 429
           WN +I    ++G +  ++R    M+RS+ KP++ T+  +L AC
Sbjct: 333 WNALIDGYARNGPESNSLRYLILMLRSNFKPNETTITSVLTAC 375



 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 65/273 (23%), Positives = 133/273 (48%), Gaps = 24/273 (8%)

Query: 234 GELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYT 293
           G++ +AR++FDE   RD +++ +M++ Y K  D+  A  LF E+PE+N V+ + +I+GY 
Sbjct: 65  GKVKEARKVFDEMPRRDAVSYASMITVYLKNKDLPQAEILFREIPERNVVADSAMISGYV 124

Query: 294 RNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTI 353
           R G   KA ++F +M    +  N  +++S +     I ++    +    L       N +
Sbjct: 125 RAGRLDKARQVFDQM----VERNVFSWTSLVSGYFKIGNVDEAMR----LFNQMPEKNVV 176

Query: 354 VMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRS 413
             ++ +  Y++ G +++ R +F+    K N + W  M+ +  ++   ++A  LF+ M + 
Sbjct: 177 SWTTAVVGYAQNGFIDEARDIFNQMPEK-NIIAWTAMVKSYVENDEIDEAFELFYQMPQR 235

Query: 414 SVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQ 473
           ++     +  ++++ C ++  + E +  F SM        N+     L+  LA+ G  + 
Sbjct: 236 NL----YSWNIMISGCINANRLNEAIQLFNSMPQR-----NEVSWTTLVTGLARNGMMEL 286

Query: 474 LMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMG 506
                + MP + D   WNA+     I   +D G
Sbjct: 287 ARKYFDHMPTK-DIAAWNAM-----ITAYVDQG 313



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 43/170 (25%), Positives = 80/170 (47%), Gaps = 16/170 (9%)

Query: 18  NCLIQSFLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLH 77
           N LI  +      G  S ++  L L+ +   +    T+  +L  C     L     + +H
Sbjct: 334 NALIDGY---ARNGPESNSLRYLILMLRSNFKPNETTITSVLTACDSILELMQAHGLVIH 390

Query: 78  LKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKH 137
           L   Q K     L+N L++ Y +CG  + AR +FD++ +K++ S+  M+  Y+N G   H
Sbjct: 391 LGFEQDKV----LANGLVTTYSRCGDVLSARFIFDQLEIKDIVSWTAMILAYSNHGCGPH 446

Query: 138 ARNLFDNM----AERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISC 183
           A  +F  M    A+ D +++  ++   + +G V++G   +      S+SC
Sbjct: 447 ALQVFARMLRSGAKPDGITFVGLLSACSHAGLVKKGQMLFD-----SMSC 491


>gi|449461160|ref|XP_004148310.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
            repeat-containing protein At3g18840-like [Cucumis
            sativus]
          Length = 1096

 Score =  329 bits (844), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 183/550 (33%), Positives = 307/550 (55%), Gaps = 6/550 (1%)

Query: 48   IRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDA 107
            IR+   TL  +L   A+   +  GK++H  + L      T F ++ LI MY KCG   +A
Sbjct: 542  IRIDEFTLITMLNLTAKLCVISYGKQLHSFM-LKTANDLTVFAASSLIDMYSKCGFFKEA 600

Query: 108  RKVFDKI-PVKNLFSYNNMLSGYANLGMMKHARNLF-DNMAERDVVSWNTMIIGYAKSGA 165
             +V+     V +  S N M++     G +  A +LF   + + DVV+WNTMI G+ ++G 
Sbjct: 601  CRVYYGCGEVVDSVSRNAMVAACCREGEIDVALDLFWKELEQNDVVAWNTMISGFVQNGY 660

Query: 166  VEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSS 225
             EE LK +  +    +  NE +FA +L+ C  L  LKL ++VH  VL    ++N  I S 
Sbjct: 661  EEESLKLFVRMADEKVGWNEHTFASVLSACSNLRSLKLGKEVHAYVLKNRLIANPFICSG 720

Query: 226  IVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSW 285
            +VD Y KC  +  A+ +  E   ++V + T+M+ GY+  G+M  A KLF+ + EKN   W
Sbjct: 721  LVDVYCKCNNMRYAKSVNSELRMQNVYSITSMIVGYSSQGNMAEARKLFDSLDEKNSAVW 780

Query: 286  TTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIR 345
            T L  GY +    +   EL +        P+     S + ACA   +L  GKQ+H +++R
Sbjct: 781  TALFFGYVKLQQCEAVFELLSEYRKEAKVPDVLILISIIGACAIQAALVPGKQIHSYMLR 840

Query: 346  TNFRSNTIVMSSLIDMYSKCGCLNDGRQVF-DLTDNKENSMLWNTMISALTQHGYDEQAI 404
               + +T + SSL+DMYSKCG +    ++F ++TD  ++S+++N MI+    HG++ +A+
Sbjct: 841  AGIKLDTKLTSSLVDMYSKCGSIIYAERIFREVTD--KDSIIYNIMIAGYAHHGWENEAV 898

Query: 405  RLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIEL 464
            +LF +MV+   KPD IT   +L+AC H GLV+ G  +F+SM++D  I P  +H+AC+I+L
Sbjct: 899  QLFKEMVKHGFKPDAITFVALLSACRHGGLVELGEHFFDSMSNDYNICPEIDHYACMIDL 958

Query: 465  LAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATH 524
              +A   D+ +  + K+P + D+ +W A    CRI+GN ++ RK  D+L+    ++ + +
Sbjct: 959  YGRANQLDKALEFMRKIPIQLDAVIWGAFLNACRINGNAELARKAEDELLVIEGENGSRY 1018

Query: 525  GLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLY 584
              L+++Y+A G    + ++R+ +  ++ KK    SW+ +E+K H F   D  H   + +Y
Sbjct: 1019 VQLANVYAAEGNWEEMGRIRKKMKGKEVKKNAGCSWVFVESKFHVFISGDRFHSKNEAIY 1078

Query: 585  SVLEQLAGQM 594
            S L  L  ++
Sbjct: 1079 STLASLTDEL 1088



 Score =  208 bits (529), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 146/519 (28%), Positives = 254/519 (48%), Gaps = 71/519 (13%)

Query: 64  ESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYN 123
           E K LK G   HL   +    TPT F+SN LI+ Y K G   DA+K+FD++P +N+FS+N
Sbjct: 423 EMKHLKHGLLCHLQ-GIKSGFTPTIFMSNQLITFYAKHGLLNDAQKLFDEMPERNVFSWN 481

Query: 124 NMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKS-GAVEEGLKFYKVLRRFS-- 180
            +++ Y     ++ AR LFD+   +D+V++N+M+ GYA+S G   + L F+  ++     
Sbjct: 482 AIIAAYVKSHNLRQARALFDSAVCKDLVTYNSMLSGYARSDGYQGQALGFFMEMQTAPDM 541

Query: 181 ISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDAR 240
           I  +EF+   +L +  KL  +   +Q+H  +L T     V  +SS++D Y+KCG   +A 
Sbjct: 542 IRIDEFTLITMLNLTAKLCVISYGKQLHSFMLKTANDLTVFAASSLIDMYSKCGFFKEAC 601

Query: 241 RLFDET-DARDVLTWTTMVSGYAKLGDMESASKLF-NEMPEKNPVSWTTLIAGYTRNGLG 298
           R++    +  D ++   MV+   + G+++ A  LF  E+ + + V+W T+I+G+ +NG  
Sbjct: 602 RVYYGCGEVVDSVSRNAMVAACCREGEIDVALDLFWKELEQNDVVAWNTMISGFVQNGYE 661

Query: 299 QKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSL 358
           +++L+LF RM   ++  N+HTF+S L AC+++ SLK GK+VH ++++    +N  + S L
Sbjct: 662 EESLKLFVRMADEKVGWNEHTFASVLSACSNLRSLKLGKEVHAYVLKNRLIANPFICSGL 721

Query: 359 IDMYSKC-------------------------------GCLNDGRQVFDLTDNKENSMLW 387
           +D+Y KC                               G + + R++FD  D K NS +W
Sbjct: 722 VDVYCKCNNMRYAKSVNSELRMQNVYSITSMIVGYSSQGNMAEARKLFDSLDEK-NSAVW 780

Query: 388 NTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACT-----------HSGLVQ 436
             +     +    E    L  +  + +  PD + L  I+ AC            HS +++
Sbjct: 781 TALFFGYVKLQQCEAVFELLSEYRKEAKVPDVLILISIIGACAIQAALVPGKQIHSYMLR 840

Query: 437 EGLTYFESMTHDL-------GIIPNQEH------------HACLIELLAQAGCSD---QL 474
            G+     +T  L       G I   E             +  +I   A  G  +   QL
Sbjct: 841 AGIKLDTKLTSSLVDMYSKCGSIIYAERIFREVTDKDSIIYNIMIAGYAHHGWENEAVQL 900

Query: 475 MNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQL 513
             ++ K  ++ D+  + AL   CR  G +++G    D +
Sbjct: 901 FKEMVKHGFKPDAITFVALLSACRHGGLVELGEHFFDSM 939



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 81/295 (27%), Positives = 142/295 (48%), Gaps = 8/295 (2%)

Query: 18  NCLIQSFLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLH 77
           N +I  F   +  G   E++     +A   +     T A +L  C+  +SLKLGK VH +
Sbjct: 649 NTMISGF---VQNGYEEESLKLFVRMADEKVGWNEHTFASVLSACSNLRSLKLGKEVHAY 705

Query: 78  LKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKH 137
           + L  R     F+ + L+ +Y KC +   A+ V  ++ ++N++S  +M+ GY++ G M  
Sbjct: 706 V-LKNRLIANPFICSGLVDVYCKCNNMRYAKSVNSELRMQNVYSITSMIVGYSSQGNMAE 764

Query: 138 ARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVK 197
           AR LFD++ E++   W  +  GY K    E   +     R+ +   +      I+  C  
Sbjct: 765 ARKLFDSLDEKNSAVWTALFFGYVKLQQCEAVFELLSEYRKEAKVPDVLILISIIGACAI 824

Query: 198 LEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTM 257
              L   +Q+H  +L  G   +  ++SS+VD Y+KCG +  A R+F E   +D + +  M
Sbjct: 825 QAALVPGKQIHSYMLRAGIKLDTKLTSSLVDMYSKCGSIIYAERIFREVTDKDSIIYNIM 884

Query: 258 VSGYAKLGDMESASKLFNEMP----EKNPVSWTTLIAGYTRNGLGQKALELFTRM 308
           ++GYA  G    A +LF EM     + + +++  L++     GL +     F  M
Sbjct: 885 IAGYAHHGWENEAVQLFKEMVKHGFKPDAITFVALLSACRHGGLVELGEHFFDSM 939


>gi|224094835|ref|XP_002310258.1| predicted protein [Populus trichocarpa]
 gi|222853161|gb|EEE90708.1| predicted protein [Populus trichocarpa]
          Length = 666

 Score =  329 bits (844), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 167/567 (29%), Positives = 301/567 (53%), Gaps = 64/567 (11%)

Query: 27  LISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTP 86
           L+  G   EA++    +  + +     T +  L+ CA+S +L  G+ +H    L +  T 
Sbjct: 144 LVRAGYNKEALAYFSDMWIQKVGCDTYTFSSALKACADSGALNYGREIHCQ-TLKKGFTA 202

Query: 87  TTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMA 146
            +F++N L +MY KCG                                + +   LF++M 
Sbjct: 203 VSFVANTLATMYNKCGK-------------------------------LDYGLRLFESMT 231

Query: 147 ERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQ 206
           +RDVVSW T+I+   + G  E  +K ++ +R   +S NEF+FA +++ C  L  ++   Q
Sbjct: 232 QRDVVSWTTIIMSNVQIGQEENAVKAFRRMRETDVSPNEFTFAAVISGCATLGRIEWGEQ 291

Query: 207 VHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGD 266
           +H  V+  G + ++ +++SI+  Y+KC +L                              
Sbjct: 292 LHAHVIRRGLVDSLSVANSIMAMYSKCWQL------------------------------ 321

Query: 267 MESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCA 326
            + AS +F  +  ++ +SW+T+I+GY + G G++A +  + M     RPN+  F+S L  
Sbjct: 322 -DLASTVFQGLSRRDIISWSTMISGYAQGGCGEEAFDYLSWMRREGPRPNEFAFASVLSV 380

Query: 327 CASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSML 386
           C ++  L+ GKQ+H  ++      NT+V S+LI+MYSKCG + +  ++FD  +   N + 
Sbjct: 381 CGNMAILEQGKQLHAHVLCVGLEQNTMVQSALINMYSKCGSIKEASKIFDEAE-YNNIVS 439

Query: 387 WNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMT 446
           W  MI+   +HGY ++AI LF  + +  ++PD +T   +L AC+H+GLV  G  YF S++
Sbjct: 440 WTAMINGYAEHGYSQEAIDLFKKLPKVGLRPDSVTFIAVLAACSHAGLVDLGFHYFNSLS 499

Query: 447 HDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMG 506
               I P+++H+ C+I+LL +AG  +   + ++ MP++ D  +W+ L   CRIHG++D G
Sbjct: 500 KVHQICPSKDHYGCMIDLLCRAGRLNDAESMIQSMPFQRDDVVWSTLLRACRIHGDVDCG 559

Query: 507 RKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENK 566
           ++  ++++  +P  + TH  L+++Y+A GK +   +VR+++  +   KE   SWI+ +++
Sbjct: 560 KRAAEKILQLDPNCAVTHITLANMYAAKGKWKEAAEVRKMMKSKGVVKEPGWSWIKFKDR 619

Query: 567 VHAFSVSDSLHPMRDVLYSVLEQLAGQ 593
           V AF   D  HP  + +Y VL+ LA Q
Sbjct: 620 VSAFVSGDRSHPEGEYIYDVLDLLASQ 646



 Score =  155 bits (393), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 98/406 (24%), Positives = 184/406 (45%), Gaps = 65/406 (16%)

Query: 34  SEAISSLD-LLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSN 92
           +EA+S    +  + G+ +    L+  L+ C  + S+  G+ +H +  +      + F+ +
Sbjct: 49  TEALSLFSKMWVEPGLHMDPFILSLALKACGLNMSVSFGESLHGY-SVKTDFVNSVFVGS 107

Query: 93  HLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVS 152
            L+ MY K G   +   VF ++P++N                               VVS
Sbjct: 108 ALVDMYMKIGKVDEGCIVFKEMPLRN-------------------------------VVS 136

Query: 153 WNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVL 212
           W  +I G  ++G  +E L ++  +    + C+ ++F+  L  C     L   R++H Q L
Sbjct: 137 WTAIIAGLVRAGYNKEALAYFSDMWIQKVGCDTYTFSSALKACADSGALNYGREIHCQTL 196

Query: 213 VTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASK 272
             GF +   +++++   Y KCG+L    RLF+    RDV++WTT++    ++G  E+A K
Sbjct: 197 KKGFTAVSFVANTLATMYNKCGKLDYGLRLFESMTQRDVVSWTTIIMSNVQIGQEENAVK 256

Query: 273 LFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVS 332
            F  M E +                               + PN+ TF++ +  CA++  
Sbjct: 257 AFRRMRETD-------------------------------VSPNEFTFAAVISGCATLGR 285

Query: 333 LKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMIS 392
           ++ G+Q+H  +IR     +  V +S++ MYSKC  L+    VF    ++ + + W+TMIS
Sbjct: 286 IEWGEQLHAHVIRRGLVDSLSVANSIMAMYSKCWQLDLASTVFQGL-SRRDIISWSTMIS 344

Query: 393 ALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEG 438
              Q G  E+A      M R   +P++   A +L+ C +  ++++G
Sbjct: 345 GYAQGGCGEEAFDYLSWMRREGPRPNEFAFASVLSVCGNMAILEQG 390



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 88/317 (27%), Positives = 156/317 (49%), Gaps = 33/317 (10%)

Query: 123 NNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLK-FYKVLRRFSI 181
           N +L      G + +AR LFD M +RD +SW T+I GY       E L  F K+     +
Sbjct: 5   NLVLKNLVKTGHLNNARQLFDKMLQRDEISWTTIISGYVNGMNTTEALSLFSKMWVEPGL 64

Query: 182 SCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARR 241
             + F  +  L  C     +     +HG  + T F+++V + S++VD Y K G++ +   
Sbjct: 65  HMDPFILSLALKACGLNMSVSFGESLHGYSVKTDFVNSVFVGSALVDMYMKIGKVDEGCI 124

Query: 242 LFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKA 301
           +F E   R+V++WT ++                               AG  R G  ++A
Sbjct: 125 VFKEMPLRNVVSWTAII-------------------------------AGLVRAGYNKEA 153

Query: 302 LELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDM 361
           L  F+ M I ++  + +TFSS L ACA   +L +G+++H   ++  F + + V ++L  M
Sbjct: 154 LAYFSDMWIQKVGCDTYTFSSALKACADSGALNYGREIHCQTLKKGFTAVSFVANTLATM 213

Query: 362 YSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKIT 421
           Y+KCG L+ G ++F+ +  + + + W T+I +  Q G +E A++ F  M  + V P++ T
Sbjct: 214 YNKCGKLDYGLRLFE-SMTQRDVVSWTTIIMSNVQIGQEENAVKAFRRMRETDVSPNEFT 272

Query: 422 LAVILNACTHSGLVQEG 438
            A +++ C   G ++ G
Sbjct: 273 FAAVISGCATLGRIEWG 289


>gi|222622177|gb|EEE56309.1| hypothetical protein OsJ_05395 [Oryza sativa Japonica Group]
          Length = 922

 Score =  329 bits (844), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 169/525 (32%), Positives = 288/525 (54%), Gaps = 3/525 (0%)

Query: 67  SLKLGKRVHLHLKLTQR-KTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNM 125
           +L  G R+   + + +R    +      LI+   +CG   DAR +F++IP   + S+N +
Sbjct: 300 ALSHGGRIDAAIAVYERDPVKSIACRTALITGLAQCGRIDDARILFEQIPEPIVVSWNAL 359

Query: 126 LSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNE 185
           ++GY   GM+  A+ LFD M  R+ +SW  MI GYA++G  EE L   + L R  +  + 
Sbjct: 360 ITGYMQNGMVNEAKELFDKMPFRNTISWAGMIAGYAQNGRSEEALGLLQELHRSGMLPSL 419

Query: 186 FSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDE 245
            S   I   C  +  L+   QVH   +  G   N    ++++  Y KC  +  AR++F  
Sbjct: 420 SSLTSIFFACSNIVALETGTQVHSLAVKVGCQFNSFACNALITMYGKCRNMEYARQVFSR 479

Query: 246 TDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELF 305
              +D+++W + ++   +   ++ A   F+ M  ++ VSWTT+I+ Y       +A+  F
Sbjct: 480 MVTKDIVSWNSFLAALVQNDLLDEARNTFDNMLSRDDVSWTTIISAYAHAEQSNEAMGAF 539

Query: 306 TRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKC 365
             M      PN    +  L  C S+ + K G+Q+H   I+    S  IV ++LI MY KC
Sbjct: 540 KTMFCEHELPNSPILTILLGVCGSLGASKIGQQIHTVAIKLGMDSELIVANALISMYFKC 599

Query: 366 GCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVI 425
           GC  D R++FDL + ++    WNT+I+   QHG   +AI+++  M  + V P+++T   +
Sbjct: 600 GCA-DSRRIFDLMEERD-IFTWNTIITGYAQHGLGREAIKMYQHMESAGVLPNEVTFVGL 657

Query: 426 LNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEH 485
           LNAC+H+GLV EG  +F+SM+ D G+ P  EH+AC+++LL + G        +  MP E 
Sbjct: 658 LNACSHAGLVDEGWKFFKSMSQDYGLTPLPEHYACMVDLLGRTGDVQGAEQFIYDMPIEP 717

Query: 486 DSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQ 545
           D+ +W+AL G C+IH N ++G++  ++L    P ++  + +LS+IYS+LG    V +VR+
Sbjct: 718 DTVIWSALLGACKIHKNAEIGKRAAEKLFRIEPSNAGNYVMLSNIYSSLGMWGEVAEVRK 777

Query: 546 LINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQL 590
           ++ ++   KE   SW +I++K+H+F   D  H   + + + LE+L
Sbjct: 778 IMKQQGVIKEPGCSWTQIKDKMHSFVTGDKQHEQIEEIVATLEEL 822



 Score =  171 bits (433), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 125/449 (27%), Positives = 210/449 (46%), Gaps = 73/449 (16%)

Query: 88  TFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAE 147
           T   N +IS Y + G    AR++FD +P +++ S+N+ML+GY +   M  ARNLF+ M E
Sbjct: 127 TVAWNAMISCYVQNGDITMARRLFDAMPSRDVSSWNSMLTGYCHSLQMVDARNLFEKMPE 186

Query: 148 RDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQV 207
           R++VSW  MI GY +     +    +  + R  +  ++ +FA  L+    L  L +   +
Sbjct: 187 RNLVSWTVMISGYGRIENHGKAWDIFCKMHREGLLPDQSNFASALSAVKGLGNLDVLESL 246

Query: 208 HGQVLVTGFLSNVVISSSIVDAYAKCGELSD-ARRLFDETDARDVLTWTTM--------- 257
               L TGF  +VVI ++I++ Y++   + D A + F+    R+  TW+TM         
Sbjct: 247 RVLALKTGFERDVVIGTAILNVYSRDTSVLDTAIKFFESMIERNEYTWSTMIAALSHGGR 306

Query: 258 ----------------------VSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRN 295
                                 ++G A+ G ++ A  LF ++PE   VSW  LI GY +N
Sbjct: 307 IDAAIAVYERDPVKSIACRTALITGLAQCGRIDDARILFEQIPEPIVVSWNALITGYMQN 366

Query: 296 GLGQKALELFTRM----------MIL---------------------RIRPNQHTFSSCL 324
           G+  +A ELF +M          MI                       + P+  + +S  
Sbjct: 367 GMVNEAKELFDKMPFRNTISWAGMIAGYAQNGRSEEALGLLQELHRSGMLPSLSSLTSIF 426

Query: 325 CACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENS 384
            AC++IV+L+ G QVH   ++   + N+   ++LI MY KC  +   RQVF     K+  
Sbjct: 427 FACSNIVALETGTQVHSLAVKVGCQFNSFACNALITMYGKCRNMEYARQVFSRMVTKD-I 485

Query: 385 MLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFES 444
           + WN+ ++AL Q+   ++A   F +M    +  D ++   I++A  H+    E +  F++
Sbjct: 486 VSWNSFLAALVQNDLLDEARNTFDNM----LSRDDVSWTTIISAYAHAEQSNEAMGAFKT 541

Query: 445 M--THDLGIIPNQEHHACLIELLAQAGCS 471
           M   H+L   PN      L+ +    G S
Sbjct: 542 MFCEHEL---PNSPILTILLGVCGSLGAS 567



 Score =  148 bits (373), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 97/355 (27%), Positives = 172/355 (48%), Gaps = 19/355 (5%)

Query: 132 LGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGI 191
           LG +  AR +FD M  RD+++WN+MI  Y  +G  +     Y  +   ++       +G 
Sbjct: 47  LGRVGEAREVFDAMPRRDIIAWNSMISAYCHNGMPDAARDLYDAISGGNMRTGAILLSGY 106

Query: 192 LTICVKLEELKLTRQVHGQVLVTGFLS-NVVISSSIVDAYAKCGELSDARRLFDETDARD 250
                     +L R +  + +  G L  N V  ++++  Y + G+++ ARRLFD   +RD
Sbjct: 107 G---------RLGRVLEARRVFDGMLERNTVAWNAMISCYVQNGDITMARRLFDAMPSRD 157

Query: 251 VLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMI 310
           V +W +M++GY     M  A  LF +MPE+N VSWT +I+GY R     KA ++F +M  
Sbjct: 158 VSSWNSMLTGYCHSLQMVDARNLFEKMPERNLVSWTVMISGYGRIENHGKAWDIFCKMHR 217

Query: 311 LRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLND 370
             + P+Q  F+S L A   + +L   + +    ++T F  + ++ ++++++YS+   + D
Sbjct: 218 EGLLPDQSNFASALSAVKGLGNLDVLESLRVLALKTGFERDVVIGTAILNVYSRDTSVLD 277

Query: 371 GRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACT 430
               F  +  + N   W+TMI+AL+  G  + AI ++    R  VK      A+I     
Sbjct: 278 TAIKFFESMIERNEYTWSTMIAALSHGGRIDAAIAVYE---RDPVKSIACRTALI-TGLA 333

Query: 431 HSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEH 485
             G + +    FE +   + +  N      LI    Q G  ++     +KMP+ +
Sbjct: 334 QCGRIDDARILFEQIPEPIVVSWN-----ALITGYMQNGMVNEAKELFDKMPFRN 383



 Score =  138 bits (348), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 107/403 (26%), Positives = 185/403 (45%), Gaps = 75/403 (18%)

Query: 31  GQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFL 90
           G+  EA+  L  L + G+     +L  I   C+   +L+ G +VH  L +       +F 
Sbjct: 398 GRSEEALGLLQELHRSGMLPSLSSLTSIFFACSNIVALETGTQVH-SLAVKVGCQFNSFA 456

Query: 91  SNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDV 150
            N LI+MY KC +   AR+VF ++  K++ S+N+ L+      ++  ARN FDNM  RD 
Sbjct: 457 CNALITMYGKCRNMEYARQVFSRMVTKDIVSWNSFLAALVQNDLLDEARNTFDNMLSRDD 516

Query: 151 VSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTI----CVKLEELKLTRQ 206
           VSW T+I  YA +    E +  +K +       +E   + ILTI    C  L   K+ +Q
Sbjct: 517 VSWTTIISAYAHAEQSNEAMGAFKTM----FCEHELPNSPILTILLGVCGSLGASKIGQQ 572

Query: 207 VHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGD 266
           +H   +  G  S ++++++++  Y KCG  +D+RR+FD  + RD+ TW T+++GYA+   
Sbjct: 573 IHTVAIKLGMDSELIVANALISMYFKCG-CADSRRIFDLMEERDIFTWNTIITGYAQ--- 628

Query: 267 MESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCA 326
                                       +GLG++A++++  M    + PN+ TF   L A
Sbjct: 629 ----------------------------HGLGREAIKMYQHMESAGVLPNEVTFVGLLNA 660

Query: 327 CASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSML 386
           C+    +  G +         F+S +                    Q + LT   E+   
Sbjct: 661 CSHAGLVDEGWKF--------FKSMS--------------------QDYGLTPLPEH--- 689

Query: 387 WNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNAC 429
           +  M+  L + G  + A +  +DM    ++PD +  + +L AC
Sbjct: 690 YACMVDLLGRTGDVQGAEQFIYDM---PIEPDTVIWSALLGAC 729



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 69/326 (21%), Positives = 132/326 (40%), Gaps = 60/326 (18%)

Query: 204 TRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAK 263
            R  HG++ V+G        S+ +    + G + +AR +FD    RD++ W +M+S Y  
Sbjct: 25  VRHAHGELEVSG-------CSARIRDLGRLGRVGEAREVFDAMPRRDIIAWNSMISAYCH 77

Query: 264 LGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSC 323
            G  ++A  L++ +   N  +   L++GY R G   +A  +F  M+              
Sbjct: 78  NGMPDAARDLYDAISGGNMRTGAILLSGYGRLGRVLEARRVFDGML-------------- 123

Query: 324 LCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKEN 383
                                      NT+  +++I  Y + G +   R++FD   +++ 
Sbjct: 124 -------------------------ERNTVAWNAMISCYVQNGDITMARRLFDAMPSRDV 158

Query: 384 SMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTY-- 441
           S  WN+M++          A  LF  M      P++  ++  +    +  +   G  +  
Sbjct: 159 SS-WNSMLTGYCHSLQMVDARNLFEKM------PERNLVSWTVMISGYGRIENHGKAWDI 211

Query: 442 FESMTHDLGIIPNQEHHACLIELLAQAGCSDQL--MNQLE-KMPYEHDSYLWNALHGV-C 497
           F  M H  G++P+Q + A  +  +   G  D L  +  L  K  +E D  +  A+  V  
Sbjct: 212 FCKM-HREGLLPDQSNFASALSAVKGLGNLDVLESLRVLALKTGFERDVVIGTAILNVYS 270

Query: 498 RIHGNIDMGRKVVDQLIDQNPQSSAT 523
           R    +D   K  + +I++N  + +T
Sbjct: 271 RDTSVLDTAIKFFESMIERNEYTWST 296


>gi|297720883|ref|NP_001172804.1| Os02g0151000 [Oryza sativa Japonica Group]
 gi|51535971|dbj|BAD38052.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|218190072|gb|EEC72499.1| hypothetical protein OsI_05871 [Oryza sativa Indica Group]
 gi|255670608|dbj|BAH91533.1| Os02g0151000 [Oryza sativa Japonica Group]
          Length = 922

 Score =  329 bits (844), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 169/525 (32%), Positives = 288/525 (54%), Gaps = 3/525 (0%)

Query: 67  SLKLGKRVHLHLKLTQR-KTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNM 125
           +L  G R+   + + +R    +      LI+   +CG   DAR +F++IP   + S+N +
Sbjct: 300 ALSHGGRIDAAIAVYERDPVKSIACRTALITGLAQCGRIDDARILFEQIPEPIVVSWNAL 359

Query: 126 LSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNE 185
           ++GY   GM+  A+ LFD M  R+ +SW  MI GYA++G  EE L   + L R  +  + 
Sbjct: 360 ITGYMQNGMVNEAKELFDKMPFRNTISWAGMIAGYAQNGRSEEALGLLQELHRSGMLPSL 419

Query: 186 FSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDE 245
            S   I   C  +  L+   QVH   +  G   N    ++++  Y KC  +  AR++F  
Sbjct: 420 SSLTSIFFACSNIVALETGTQVHSLAVKVGCQFNSFACNALITMYGKCRNMEYARQVFSR 479

Query: 246 TDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELF 305
              +D+++W + ++   +   ++ A   F+ M  ++ VSWTT+I+ Y       +A+  F
Sbjct: 480 MVTKDIVSWNSFLAALVQNDLLDEARNTFDNMLSRDDVSWTTIISAYAHAEQSNEAMGAF 539

Query: 306 TRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKC 365
             M      PN    +  L  C S+ + K G+Q+H   I+    S  IV ++LI MY KC
Sbjct: 540 KTMFCEHELPNSPILTILLGVCGSLGASKIGQQIHTVAIKLGMDSELIVANALISMYFKC 599

Query: 366 GCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVI 425
           GC  D R++FDL + ++    WNT+I+   QHG   +AI+++  M  + V P+++T   +
Sbjct: 600 GCA-DSRRIFDLMEERD-IFTWNTIITGYAQHGLGREAIKMYQHMESAGVLPNEVTFVGL 657

Query: 426 LNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEH 485
           LNAC+H+GLV EG  +F+SM+ D G+ P  EH+AC+++LL + G        +  MP E 
Sbjct: 658 LNACSHAGLVDEGWKFFKSMSQDYGLTPLPEHYACMVDLLGRTGDVQGAEQFIYDMPIEP 717

Query: 486 DSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQ 545
           D+ +W+AL G C+IH N ++G++  ++L    P ++  + +LS+IYS+LG    V +VR+
Sbjct: 718 DTVIWSALLGACKIHKNAEIGKRAAEKLFRIEPSNAGNYVMLSNIYSSLGMWGEVAEVRK 777

Query: 546 LINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQL 590
           ++ ++   KE   SW +I++K+H+F   D  H   + + + LE+L
Sbjct: 778 IMKQQGVIKEPGCSWTQIKDKMHSFVTGDKQHEQIEEIVATLEEL 822



 Score =  171 bits (433), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 125/449 (27%), Positives = 210/449 (46%), Gaps = 73/449 (16%)

Query: 88  TFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAE 147
           T   N +IS Y + G    AR++FD +P +++ S+N+ML+GY +   M  ARNLF+ M E
Sbjct: 127 TVAWNAMISCYVQNGDITMARRLFDAMPSRDVSSWNSMLTGYCHSLQMVDARNLFEKMPE 186

Query: 148 RDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQV 207
           R++VSW  MI GY +     +    +  + R  +  ++ +FA  L+    L  L +   +
Sbjct: 187 RNLVSWTVMISGYGRIENHGKAWDIFCKMHREGLLPDQSNFASALSAVKGLGNLDVLESL 246

Query: 208 HGQVLVTGFLSNVVISSSIVDAYAKCGELSD-ARRLFDETDARDVLTWTTM--------- 257
               L TGF  +VVI ++I++ Y++   + D A + F+    R+  TW+TM         
Sbjct: 247 RVLALKTGFERDVVIGTAILNVYSRDTSVLDTAIKFFESMIERNEYTWSTMIAALSHGGR 306

Query: 258 ----------------------VSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRN 295
                                 ++G A+ G ++ A  LF ++PE   VSW  LI GY +N
Sbjct: 307 IDAAIAVYERDPVKSIACRTALITGLAQCGRIDDARILFEQIPEPIVVSWNALITGYMQN 366

Query: 296 GLGQKALELFTRM----------MIL---------------------RIRPNQHTFSSCL 324
           G+  +A ELF +M          MI                       + P+  + +S  
Sbjct: 367 GMVNEAKELFDKMPFRNTISWAGMIAGYAQNGRSEEALGLLQELHRSGMLPSLSSLTSIF 426

Query: 325 CACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENS 384
            AC++IV+L+ G QVH   ++   + N+   ++LI MY KC  +   RQVF     K+  
Sbjct: 427 FACSNIVALETGTQVHSLAVKVGCQFNSFACNALITMYGKCRNMEYARQVFSRMVTKD-I 485

Query: 385 MLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFES 444
           + WN+ ++AL Q+   ++A   F +M    +  D ++   I++A  H+    E +  F++
Sbjct: 486 VSWNSFLAALVQNDLLDEARNTFDNM----LSRDDVSWTTIISAYAHAEQSNEAMGAFKT 541

Query: 445 M--THDLGIIPNQEHHACLIELLAQAGCS 471
           M   H+L   PN      L+ +    G S
Sbjct: 542 MFCEHEL---PNSPILTILLGVCGSLGAS 567



 Score =  148 bits (373), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 97/355 (27%), Positives = 172/355 (48%), Gaps = 19/355 (5%)

Query: 132 LGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGI 191
           LG +  AR +FD M  RD+++WN+MI  Y  +G  +     Y  +   ++       +G 
Sbjct: 47  LGRVGEAREVFDAMPRRDIIAWNSMISAYCHNGMPDAARDLYDAISGGNMRTGAILLSGY 106

Query: 192 LTICVKLEELKLTRQVHGQVLVTGFLS-NVVISSSIVDAYAKCGELSDARRLFDETDARD 250
                     +L R +  + +  G L  N V  ++++  Y + G+++ ARRLFD   +RD
Sbjct: 107 G---------RLGRVLEARRVFDGMLERNTVAWNAMISCYVQNGDITMARRLFDAMPSRD 157

Query: 251 VLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMI 310
           V +W +M++GY     M  A  LF +MPE+N VSWT +I+GY R     KA ++F +M  
Sbjct: 158 VSSWNSMLTGYCHSLQMVDARNLFEKMPERNLVSWTVMISGYGRIENHGKAWDIFCKMHR 217

Query: 311 LRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLND 370
             + P+Q  F+S L A   + +L   + +    ++T F  + ++ ++++++YS+   + D
Sbjct: 218 EGLLPDQSNFASALSAVKGLGNLDVLESLRVLALKTGFERDVVIGTAILNVYSRDTSVLD 277

Query: 371 GRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACT 430
               F  +  + N   W+TMI+AL+  G  + AI ++    R  VK      A+I     
Sbjct: 278 TAIKFFESMIERNEYTWSTMIAALSHGGRIDAAIAVYE---RDPVKSIACRTALI-TGLA 333

Query: 431 HSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEH 485
             G + +    FE +   + +  N      LI    Q G  ++     +KMP+ +
Sbjct: 334 QCGRIDDARILFEQIPEPIVVSWN-----ALITGYMQNGMVNEAKELFDKMPFRN 383



 Score =  138 bits (348), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 107/403 (26%), Positives = 185/403 (45%), Gaps = 75/403 (18%)

Query: 31  GQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFL 90
           G+  EA+  L  L + G+     +L  I   C+   +L+ G +VH  L +       +F 
Sbjct: 398 GRSEEALGLLQELHRSGMLPSLSSLTSIFFACSNIVALETGTQVH-SLAVKVGCQFNSFA 456

Query: 91  SNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDV 150
            N LI+MY KC +   AR+VF ++  K++ S+N+ L+      ++  ARN FDNM  RD 
Sbjct: 457 CNALITMYGKCRNMEYARQVFSRMVTKDIVSWNSFLAALVQNDLLDEARNTFDNMLSRDD 516

Query: 151 VSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTI----CVKLEELKLTRQ 206
           VSW T+I  YA +    E +  +K +       +E   + ILTI    C  L   K+ +Q
Sbjct: 517 VSWTTIISAYAHAEQSNEAMGAFKTM----FCEHELPNSPILTILLGVCGSLGASKIGQQ 572

Query: 207 VHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGD 266
           +H   +  G  S ++++++++  Y KCG  +D+RR+FD  + RD+ TW T+++GYA+   
Sbjct: 573 IHTVAIKLGMDSELIVANALISMYFKCG-CADSRRIFDLMEERDIFTWNTIITGYAQ--- 628

Query: 267 MESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCA 326
                                       +GLG++A++++  M    + PN+ TF   L A
Sbjct: 629 ----------------------------HGLGREAIKMYQHMESAGVLPNEVTFVGLLNA 660

Query: 327 CASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSML 386
           C+    +  G +         F+S +                    Q + LT   E+   
Sbjct: 661 CSHAGLVDEGWKF--------FKSMS--------------------QDYGLTPLPEH--- 689

Query: 387 WNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNAC 429
           +  M+  L + G  + A +  +DM    ++PD +  + +L AC
Sbjct: 690 YACMVDLLGRTGDVQGAEQFIYDM---PIEPDTVIWSALLGAC 729



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 69/326 (21%), Positives = 132/326 (40%), Gaps = 60/326 (18%)

Query: 204 TRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAK 263
            R  HG++ V+G        S+ +    + G + +AR +FD    RD++ W +M+S Y  
Sbjct: 25  VRHAHGELEVSG-------CSARIRDLGRLGRVGEAREVFDAMPRRDIIAWNSMISAYCH 77

Query: 264 LGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSC 323
            G  ++A  L++ +   N  +   L++GY R G   +A  +F  M+              
Sbjct: 78  NGMPDAARDLYDAISGGNMRTGAILLSGYGRLGRVLEARRVFDGML-------------- 123

Query: 324 LCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKEN 383
                                      NT+  +++I  Y + G +   R++FD   +++ 
Sbjct: 124 -------------------------ERNTVAWNAMISCYVQNGDITMARRLFDAMPSRDV 158

Query: 384 SMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTY-- 441
           S  WN+M++          A  LF  M      P++  ++  +    +  +   G  +  
Sbjct: 159 SS-WNSMLTGYCHSLQMVDARNLFEKM------PERNLVSWTVMISGYGRIENHGKAWDI 211

Query: 442 FESMTHDLGIIPNQEHHACLIELLAQAGCSDQL--MNQLE-KMPYEHDSYLWNALHGV-C 497
           F  M H  G++P+Q + A  +  +   G  D L  +  L  K  +E D  +  A+  V  
Sbjct: 212 FCKM-HREGLLPDQSNFASALSAVKGLGNLDVLESLRVLALKTGFERDVVIGTAILNVYS 270

Query: 498 RIHGNIDMGRKVVDQLIDQNPQSSAT 523
           R    +D   K  + +I++N  + +T
Sbjct: 271 RDTSVLDTAIKFFESMIERNEYTWST 296


>gi|147856457|emb|CAN80769.1| hypothetical protein VITISV_013866 [Vitis vinifera]
          Length = 761

 Score =  329 bits (844), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 170/511 (33%), Positives = 296/511 (57%), Gaps = 16/511 (3%)

Query: 92  NHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVV 151
           N ++S Y+K  S+  A+ +FD +P +N+ ++  M++GYA +  ++ AR  FD M ER VV
Sbjct: 167 NAMVSGYWKWESEGQAQWLFDVMPERNVITWTAMVTGYAKVKDLEAARRYFDCMPERSVV 226

Query: 152 SWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEE----LKLTRQV 207
           SWN M+ GYA++G  EE L+ +  +    I  +E ++  +++ C    +      L R +
Sbjct: 227 SWNAMLSGYAQNGLAEEVLRLFDEMVNAGIEPDETTWVTVISACSSRGDPCLAASLVRTL 286

Query: 208 HGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDA-RDVLTWTTMVSGYAKLGD 266
           H + +      N  + ++++D YAKCG +  ARR+FDE  A R+ +TW  M+S Y ++G+
Sbjct: 287 HQKQIQL----NCFVRTALLDMYAKCGSIGAARRIFDELGAYRNSVTWNAMISAYTRVGN 342

Query: 267 MESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILR-IRPNQHTFSSCLC 325
           ++SA +LFN MP +N V+W ++IAGY +NG    A+ELF  M+  + + P++ T  S + 
Sbjct: 343 LDSARELFNTMPGRNVVTWNSMIAGYAQNGQSAMAIELFKEMITAKKLTPDEVTMVSVIS 402

Query: 326 ACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSM 385
           AC  + +L+ G  V  FL     + +    +++I MYS+CG + D ++VF     ++  +
Sbjct: 403 ACGHLGALELGNWVVRFLTENQIKLSISGHNAMIFMYSRCGSMEDAKRVFQEMATRD-VV 461

Query: 386 LWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESM 445
            +NT+IS    HG+  +AI L   M    ++PD++T   +L AC+H+GL++EG   FES+
Sbjct: 462 SYNTLISGFAAHGHGVEAINLMSTMKEGGIEPDRVTFIGVLTACSHAGLLEEGRKVFESI 521

Query: 446 THDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDM 505
                  P  +H+AC+++LL + G  +     +E+MP E  + ++ +L    RIH  +++
Sbjct: 522 KD-----PAIDHYACMVDLLGRVGELEDAKRTMERMPMEPHAGVYGSLLNASRIHKQVEL 576

Query: 506 GRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIEN 565
           G    ++L +  P +S    LLS+IY++ G+ + VE++R+ + +   KK    SW+E   
Sbjct: 577 GELAANKLFELEPDNSGNFILLSNIYASAGRWKDVERIREAMKKGGVKKTTGWSWVEYGG 636

Query: 566 KVHAFSVSDSLHPMRDVLYSVLEQLAGQMGE 596
           K+H F V+D  H   D +Y +L +L  +M E
Sbjct: 637 KLHKFIVADRSHERSDDIYQLLIELRKKMRE 667



 Score =  139 bits (349), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 88/305 (28%), Positives = 137/305 (44%), Gaps = 83/305 (27%)

Query: 208 HGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETD--ARDVLTWTTMVSGYAKLG 265
           H  VL  G  S+  + ++++D YA+ G +  AR++FDE     R V  W  MVSGY K  
Sbjct: 118 HAHVLKLGHGSDAFVRNAVIDMYARLGPIGHARKVFDEIPDYERKVADWNAMVSGYWKWE 177

Query: 266 DMESASKLFNEMPEKNPVSWTTLIAGYTR------------------------------- 294
               A  LF+ MPE+N ++WT ++ GY +                               
Sbjct: 178 SEGQAQWLFDVMPERNVITWTAMVTGYAKVKDLEAARRYFDCMPERSVVSWNAMLSGYAQ 237

Query: 295 NGLGQKALELFTRMMILRIRPNQHTFSSCLCAC---------ASIVSLKHGKQVHGFLIR 345
           NGL ++ L LF  M+   I P++ T+ + + AC         AS+V   H KQ+      
Sbjct: 238 NGLAEEVLRLFDEMVNAGIEPDETTWVTVISACSSRGDPCLAASLVRTLHQKQI------ 291

Query: 346 TNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALT---------- 395
              + N  V ++L+DMY+KCG +   R++FD      NS+ WN MISA T          
Sbjct: 292 ---QLNCFVRTALLDMYAKCGSIGAARRIFDELGAYRNSVTWNAMISAYTRVGNLDSARE 348

Query: 396 ---------------------QHGYDEQAIRLFHDMVRS-SVKPDKITLAVILNACTHSG 433
                                Q+G    AI LF +M+ +  + PD++T+  +++AC H G
Sbjct: 349 LFNTMPGRNVVTWNSMIAGYAQNGQSAMAIELFKEMITAKKLTPDEVTMVSVISACGHLG 408

Query: 434 LVQEG 438
            ++ G
Sbjct: 409 ALELG 413



 Score = 69.3 bits (168), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 73/345 (21%), Positives = 143/345 (41%), Gaps = 36/345 (10%)

Query: 242 LFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMP----EKNPVSWTTLIAGYTRNGL 297
           LF+ T   +V  +T+M+  Y+ L D      +F  M       +   +  LI      G+
Sbjct: 56  LFNSTLNPNVFVFTSMLRFYSHLQDHAKVVLMFEHMQGCGVRPDAFVYPILIKSAGNGGI 115

Query: 298 GQKALEL--------FTRMMIL----RIRPNQHT---------FSSCLCACASIVSLKHG 336
           G  A  L        F R  ++    R+ P  H          +   +    ++VS    
Sbjct: 116 GFHAHVLKLGHGSDAFVRNAVIDMYARLGPIGHARKVFDEIPDYERKVADWNAMVSGYWK 175

Query: 337 KQVHG---FLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISA 393
            +  G   +L       N I  ++++  Y+K   L   R+ FD    + + + WN M+S 
Sbjct: 176 WESEGQAQWLFDVMPERNVITWTAMVTGYAKVKDLEAARRYFDCMPER-SVVSWNAMLSG 234

Query: 394 LTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIP 453
             Q+G  E+ +RLF +MV + ++PD+ T   +++AC+  G      +   ++ H   I  
Sbjct: 235 YAQNGLAEEVLRLFDEMVNAGIEPDETTWVTVISACSSRGDPCLAASLVRTL-HQKQIQL 293

Query: 454 NQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQL 513
           N      L+++ A+ G         +++    +S  WNA+       GN+D  R++ + +
Sbjct: 294 NCFVRTALLDMYAKCGSIGAARRIFDELGAYRNSVTWNAMISAYTRVGNLDSARELFNTM 353

Query: 514 IDQN--PQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQ 556
             +N    +S   G   +  SA+     +E  +++I  ++   ++
Sbjct: 354 PGRNVVTWNSMIAGYAQNGQSAMA----IELFKEMITAKKLTPDE 394


>gi|224121210|ref|XP_002318526.1| predicted protein [Populus trichocarpa]
 gi|222859199|gb|EEE96746.1| predicted protein [Populus trichocarpa]
          Length = 552

 Score =  329 bits (843), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 170/498 (34%), Positives = 278/498 (55%), Gaps = 47/498 (9%)

Query: 94  LISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSW 153
           +IS Y +      AR +FDK+P ++LFS+N ML+GY     +K AR LF+ M ERD+VSW
Sbjct: 1   MISGYLRNHKFDLARDLFDKMPERDLFSWNVMLTGYVRNRDLKTARALFERMPERDIVSW 60

Query: 154 NTMIIGYAKSGAVEEGLK-FYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVL 212
           N M+ GYA++G V+E  + FYK+  +  IS N     G+L                    
Sbjct: 61  NAMLSGYAQNGFVDEAREIFYKMPLKNGISWN-----GLLA------------------- 96

Query: 213 VTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASK 272
                           AY + G + DA+RLF+      +++W  ++ G+ +         
Sbjct: 97  ----------------AYVQNGRIEDAKRLFESKMDWTLVSWNCLMGGFVR-----KRRN 135

Query: 273 LFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVS 332
           LF+ MP+++ +SW+ +IAGY++NG  ++AL  F  M     R N+ +F+  L  C++I +
Sbjct: 136 LFDNMPQRDSISWSAMIAGYSQNGCSEEALHFFVEMQRDCERLNRSSFTCALSTCSNIAA 195

Query: 333 LKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMIS 392
           L+ G+Q+H  L++  +++   V ++L+ MY KCG +++ R  F     K+  + WNTMI 
Sbjct: 196 LELGRQLHCRLVKAGYQTGWYVGNALLAMYCKCGSIDEARDAFQEILEKD-VVSWNTMIH 254

Query: 393 ALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGII 452
              +HG+ E+A+ +F  M  + ++PD  T+  +L AC+H+GLV +G  YF SM  D GI 
Sbjct: 255 GYARHGFGEEALTVFELMKTTGIRPDDATMVSVLAACSHAGLVDQGSEYFYSMNRDYGIT 314

Query: 453 PNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQ 512
               H+ C+++LL +AG  ++  N ++ MP+E D+  W AL G  RIHGN ++G K    
Sbjct: 315 AKLVHYTCMVDLLGRAGQLEEAQNLMKNMPFEPDAATWGALLGASRIHGNTELGEKAAQI 374

Query: 513 LIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSV 572
           + +  P +S  + LLS +Y+A G+     K+R  +  +  KK    SW+E++NK+H F V
Sbjct: 375 IFEMEPHNSGMYILLSKLYAASGRWSDAGKMRLEMRNKGVKKVPGYSWLEVQNKIHTFKV 434

Query: 573 SDSLHPMRDVLYSVLEQL 590
            D+ HP  D +Y+ LE++
Sbjct: 435 GDTSHPHTDKIYTFLEEM 452



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 90/337 (26%), Positives = 156/337 (46%), Gaps = 58/337 (17%)

Query: 92  NHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHA------------- 138
           N ++S Y + G   +AR++F K+P+KN  S+N +L+ Y   G ++ A             
Sbjct: 61  NAMLSGYAQNGFVDEAREIFYKMPLKNGISWNGLLAAYVQNGRIEDAKRLFESKMDWTLV 120

Query: 139 -------------RNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNE 185
                        RNLFDNM +RD +SW+ MI GY+++G  EE L F+  ++R     N 
Sbjct: 121 SWNCLMGGFVRKRRNLFDNMPQRDSISWSAMIAGYSQNGCSEEALHFFVEMQRDCERLNR 180

Query: 186 FSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDE 245
            SF   L+ C  +  L+L RQ+H +++  G+ +   + ++++  Y KCG + +AR  F E
Sbjct: 181 SSFTCALSTCSNIAALELGRQLHCRLVKAGYQTGWYVGNALLAMYCKCGSIDEARDAFQE 240

Query: 246 TDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELF 305
              +DV++W TM+ GYA                               R+G G++AL +F
Sbjct: 241 ILEKDVVSWNTMIHGYA-------------------------------RHGFGEEALTVF 269

Query: 306 TRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRT-NFRSNTIVMSSLIDMYSK 364
             M    IRP+  T  S L AC+    +  G +    + R     +  +  + ++D+  +
Sbjct: 270 ELMKTTGIRPDDATMVSVLAACSHAGLVDQGSEYFYSMNRDYGITAKLVHYTCMVDLLGR 329

Query: 365 CGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDE 401
            G L + + +      + ++  W  ++ A   HG  E
Sbjct: 330 AGQLEEAQNLMKNMPFEPDAATWGALLGASRIHGNTE 366



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 62/259 (23%), Positives = 111/259 (42%), Gaps = 49/259 (18%)

Query: 49  RLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDAR 108
           RL   +    L  C+   +L+LG+++H  L     +T   ++ N L++MY KCGS  +AR
Sbjct: 177 RLNRSSFTCALSTCSNIAALELGRQLHCRLVKAGYQT-GWYVGNALLAMYCKCGSIDEAR 235

Query: 109 KVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMA----ERDVVSWNTMIIGYAKSG 164
             F +I  K++ S+N M+ GYA  G  + A  +F+ M       D  +  +++   + +G
Sbjct: 236 DAFQEILEKDVVSWNTMIHGYARHGFGEEALTVFELMKTTGIRPDDATMVSVLAACSHAG 295

Query: 165 AVEEGLK-FYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVIS 223
            V++G + FY + R + I+                                   + +V  
Sbjct: 296 LVDQGSEYFYSMNRDYGIT-----------------------------------AKLVHY 320

Query: 224 SSIVDAYAKCGELSDARRLFDETDAR-DVLTWTTM-----VSGYAKLGDMESASKLFNEM 277
           + +VD   + G+L +A+ L        D  TW  +     + G  +LG  E A+++  EM
Sbjct: 321 TCMVDLLGRAGQLEEAQNLMKNMPFEPDAATWGALLGASRIHGNTELG--EKAAQIIFEM 378

Query: 278 PEKNPVSWTTLIAGYTRNG 296
              N   +  L   Y  +G
Sbjct: 379 EPHNSGMYILLSKLYAASG 397


>gi|218195439|gb|EEC77866.1| hypothetical protein OsI_17132 [Oryza sativa Indica Group]
          Length = 865

 Score =  329 bits (843), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 173/581 (29%), Positives = 317/581 (54%), Gaps = 40/581 (6%)

Query: 26  SLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKT 85
           +L   G++ EA+  +  + ++G+RL + T    L  CA   SL  GK++H          
Sbjct: 244 ALSQSGRVREALGLVVEMHRKGVRLDSTTYTSSLTACARLFSLGWGKQLH---------- 293

Query: 86  PTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNM 145
                                  KV   +P  + +  + ++  YA  G  K A+ +F+++
Sbjct: 294 ----------------------AKVIRSLPQIDPYVASALIELYAKCGSFKEAKRVFNSL 331

Query: 146 AERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTR 205
            +R+ VSW  +I G  +     + ++ +  +R   ++ ++F+ A +++ C    +L L R
Sbjct: 332 QDRNSVSWTVLIGGSLQYECFSKSVELFNQMRAELMAIDQFALATLISGCFNRMDLCLGR 391

Query: 206 QVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLG 265
           Q+H   L +G    +V+S+S++  YAKCG+L +A  +F     RD+++WT+M++ Y+++G
Sbjct: 392 QLHSLCLKSGHNRAIVVSNSLISLYAKCGDLQNAEFVFSSMSERDIVSWTSMITAYSQIG 451

Query: 266 DMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILR-IRPNQHTFSSCL 324
           ++  A + F+ M  +N ++W  ++  Y ++G  +  L++++ M+  + + P+  T+ +  
Sbjct: 452 NIIKAREFFDGMDTRNAITWNAMLGAYIQHGAEEDGLKMYSAMLSQKDVTPDWVTYVTLF 511

Query: 325 CACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENS 384
             CA I + K G Q+ G  ++     N  V ++ I MYSKCG +++ +++FDL + K+  
Sbjct: 512 RGCADIGANKLGDQIIGHTVKAGLILNVSVANAAITMYSKCGRISEAQKLFDLLNGKD-V 570

Query: 385 MLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFES 444
           + WN MI+  +QHG  +QA + F DM+    KPD I+   +L+ C+HSGLVQEG  YF+ 
Sbjct: 571 VSWNAMITGYSQHGMGKQAAKTFDDMLSKGAKPDYISYVAVLSGCSHSGLVQEGKLYFDM 630

Query: 445 MTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNID 504
           MT   GI P  EH +C+++LL +AG   +  + ++KMP +  + +W AL   C+IHGN +
Sbjct: 631 MTRVHGISPGLEHFSCMVDLLGRAGHLTEAKDLIDKMPMKPTAEVWGALLSACKIHGNDE 690

Query: 505 MGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIE 564
           +       + + +   S ++ LL+ IYS  GK     +VR+L+ ++  KK    SW+E+E
Sbjct: 691 LAELAAKHVFELDSPDSGSYMLLAKIYSDAGKSDDSAQVRKLMRDKGIKKNPGYSWMEVE 750

Query: 565 NKVHAFSVSDSLHP----MRDVLYSVLEQLA--GQMGEDAP 599
           NKVH F   D  HP    +R+ L  ++E++A  G +  ++P
Sbjct: 751 NKVHVFKADDVSHPQVIAIRNKLDELMEKIAHLGYVRTESP 791



 Score =  205 bits (522), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 119/379 (31%), Positives = 206/379 (54%), Gaps = 4/379 (1%)

Query: 53  ETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFD 112
           + LA  L+ C    +L   + +H  L +T       FL N L+  YF CG+  DAR++  
Sbjct: 5   QALADALRSCGSRGALAGARALHGRL-VTVGLASAVFLQNTLLHAYFSCGALSDARRLLR 63

Query: 113 K-IPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLK 171
             I   N+ ++N M++GYA  G +  A  LFD M  RDV SWNT++ GY ++    +GL+
Sbjct: 64  ADIKEPNVITHNIMMNGYAKQGSLSDAEELFDRMPRRDVASWNTLMSGYFQARRFLDGLE 123

Query: 172 FYKVLRRFSISC-NEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAY 230
            +  + R   S  N F+F  ++  C  L   +L  Q+ G      F  +  + +++VD +
Sbjct: 124 TFVSMHRSGDSLPNAFTFCCVMKSCGALGCRELAPQLLGLFWKFDFWGDPDVETALVDMF 183

Query: 231 AKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIA 290
            +CG +  A RLF + +   +    +M++GYAKL  ++ A + F +M E++ VSW  +IA
Sbjct: 184 VRCGYVDFASRLFSQIERPTIFCRNSMLAGYAKLYGIDHAIEYFEDMAERDVVSWNMMIA 243

Query: 291 GYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRS 350
             +++G  ++AL L   M    +R +  T++S L ACA + SL  GKQ+H  +IR+  + 
Sbjct: 244 ALSQSGRVREALGLVVEMHRKGVRLDSTTYTSSLTACARLFSLGWGKQLHAKVIRSLPQI 303

Query: 351 NTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDM 410
           +  V S+LI++Y+KCG   + ++VF+   ++ NS+ W  +I    Q+    +++ LF+ M
Sbjct: 304 DPYVASALIELYAKCGSFKEAKRVFNSLQDR-NSVSWTVLIGGSLQYECFSKSVELFNQM 362

Query: 411 VRSSVKPDKITLAVILNAC 429
               +  D+  LA +++ C
Sbjct: 363 RAELMAIDQFALATLISGC 381


>gi|297738034|emb|CBI27235.3| unnamed protein product [Vitis vinifera]
          Length = 696

 Score =  329 bits (843), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 187/587 (31%), Positives = 305/587 (51%), Gaps = 52/587 (8%)

Query: 21  IQSFLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKL 80
           + +  S        EAIS+   +   G R        +L+  +  + LK G+++H     
Sbjct: 61  VDALRSRTRSNDFREAISTYIEMTVSGARPDNFAFPAVLKAVSGLQDLKTGEQIHAAAVK 120

Query: 81  TQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARN 140
               + +  ++N L++MY KCG       + DK      F+ N +++ YA LG +  ++ 
Sbjct: 121 FGYGSSSVTVANTLVNMYGKCGG------IGDKT-----FTNNALMAMYAKLGRVDDSKA 169

Query: 141 LFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEE 200
           LF++  +RD+VSWNTMI  +++S    E L F++++    +  +  + A +L  C  LE 
Sbjct: 170 LFESFVDRDMVSWNTMISSFSQSDRFSEALAFFRLMVLEGVELDGVTIASVLPACSHLER 229

Query: 201 LKLTRQVHGQVLVTG-FLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVS 259
           L + +++H  VL     + N  + S++VD Y  C ++   RR+FD    R +        
Sbjct: 230 LDVGKEIHAYVLRNNDLIENSFVGSALVDMYCNCRQVESGRRVFDHILGRRI-------- 281

Query: 260 GYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMM-ILRIRPNQH 318
                           E+       W  +I+GY RNGL +KAL LF  M+ +  + PN  
Sbjct: 282 ----------------EL-------WNAMISGYARNGLDEKALILFIEMIKVAGLLPNTT 318

Query: 319 TFSSCLCACA-SIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDL 377
           T +S + AC  S+ ++  GK++H + IR    S+  V S+L+DMY+KCGCLN  R+VF+ 
Sbjct: 319 TMASVMPACVHSLAAIAKGKEIHAYAIRNMLASDITVGSALVDMYAKCGCLNLSRRVFNE 378

Query: 378 TDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSS-----VKPDKITLAVILNACTHS 432
             NK N + WN +I A   HG  E+A+ LF +MV  +      KP+++T   +  AC+HS
Sbjct: 379 MPNK-NVITWNVLIMACGMHGKGEEALELFKNMVAEAGRGGEAKPNEVTFITVFAACSHS 437

Query: 433 GLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSY-LWN 491
           GL+ EGL  F  M HD G+ P  +H+AC+++LL +AG  ++    +  MP E D    W+
Sbjct: 438 GLISEGLNLFYRMKHDHGVEPTSDHYACVVDLLGRAGQLEEAYELVNTMPAEFDKVGAWS 497

Query: 492 ALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQ 551
           +L G CRIH N+++G      L+   P  ++ + LLS+IYS+ G      +VR+ + +  
Sbjct: 498 SLLGACRIHQNVELGEVAAKNLLHLEPNVASHYVLLSNIYSSAGLWNKAMEVRKNMRQMG 557

Query: 552 FKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQMGEDA 598
            KKE   SWIE  ++VH F   D  HP  + L+  LE L+ +M ++ 
Sbjct: 558 VKKEPGCSWIEFRDEVHKFMAGDVSHPQSEQLHGFLETLSEKMRKEG 604



 Score =  154 bits (388), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 97/358 (27%), Positives = 180/358 (50%), Gaps = 18/358 (5%)

Query: 148 RDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQV 207
           R   SW   +    +S    E +  Y  +       + F+F  +L     L++LK   Q+
Sbjct: 55  RSTASWVDALRSRTRSNDFREAISTYIEMTVSGARPDNFAFPAVLKAVSGLQDLKTGEQI 114

Query: 208 HGQVLVTGF-LSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGD 266
           H   +  G+  S+V +++++V+ Y KCG + D              T   +++ YAKLG 
Sbjct: 115 HAAAVKFGYGSSSVTVANTLVNMYGKCGGIGD-----------KTFTNNALMAMYAKLGR 163

Query: 267 MESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCA 326
           ++ +  LF    +++ VSW T+I+ ++++    +AL  F  M++  +  +  T +S L A
Sbjct: 164 VDDSKALFESFVDRDMVSWNTMISSFSQSDRFSEALAFFRLMVLEGVELDGVTIASVLPA 223

Query: 327 CASIVSLKHGKQVHGFLIRTN-FRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSM 385
           C+ +  L  GK++H +++R N    N+ V S+L+DMY  C  +  GR+VFD    +    
Sbjct: 224 CSHLERLDVGKEIHAYVLRNNDLIENSFVGSALVDMYCNCRQVESGRRVFDHILGRRIE- 282

Query: 386 LWNTMISALTQHGYDEQAIRLFHDMVR-SSVKPDKITLAVILNACTHS-GLVQEGLTYFE 443
           LWN MIS   ++G DE+A+ LF +M++ + + P+  T+A ++ AC HS   + +G     
Sbjct: 283 LWNAMISGYARNGLDEKALILFIEMIKVAGLLPNTTTMASVMPACVHSLAAIAKGKEIHA 342

Query: 444 SMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHG 501
               ++ +  +    + L+++ A+ GC +       +MP + +   WN L   C +HG
Sbjct: 343 YAIRNM-LASDITVGSALVDMYAKCGCLNLSRRVFNEMPNK-NVITWNVLIMACGMHG 398



 Score = 81.3 bits (199), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 47/174 (27%), Positives = 88/174 (50%), Gaps = 20/174 (11%)

Query: 278 PEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGK 337
           P ++  SW   +   TR+   ++A+  +  M +   RP+   F + L A + +  LK G+
Sbjct: 53  PSRSTASWVDALRSRTRSNDFREAISTYIEMTVSGARPDNFAFPAVLKAVSGLQDLKTGE 112

Query: 338 QVHGFLIRTNFRSNTI-VMSSLIDMYSKCGCLNDGR-----------QVFDLTDNK---- 381
           Q+H   ++  + S+++ V ++L++MY KCG + D             ++  + D+K    
Sbjct: 113 QIHAAAVKFGYGSSSVTVANTLVNMYGKCGGIGDKTFTNNALMAMYAKLGRVDDSKALFE 172

Query: 382 ----ENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTH 431
                + + WNTMIS+ +Q     +A+  F  MV   V+ D +T+A +L AC+H
Sbjct: 173 SFVDRDMVSWNTMISSFSQSDRFSEALAFFRLMVLEGVELDGVTIASVLPACSH 226


>gi|188509980|gb|ACD56662.1| putative pentatricopeptide [Gossypium arboreum]
          Length = 805

 Score =  328 bits (842), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 191/638 (29%), Positives = 330/638 (51%), Gaps = 73/638 (11%)

Query: 32  QLSEAISSLDLLAQ-RGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFL 90
           QL +  ++++L+   +   L  +T   +LQ CA  KS   GK+VH  +K          L
Sbjct: 78  QLGDLENAMELICMCQKSELETKTYGSVLQLCAGLKSFTDGKKVHSIIKSNSVGVDGA-L 136

Query: 91  SNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKH------------- 137
              L+S Y  CG   + R+VFD +  KN++ +N M+S YA +G  K              
Sbjct: 137 GLKLVSFYATCGDLKEGRRVFDTMEKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKGI 196

Query: 138 -------ARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAG 190
                  A  LFD + +RDV+SWN+MI GY  +G  E GL  YK +    I  +  +   
Sbjct: 197 EGKRPESAFELFDKLCDRDVISWNSMISGYVSNGLTERGLGIYKQMMYLGIDVDLATIIS 256

Query: 191 ILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARD 250
           +L  C     L L + VH   + + F   +  S++++D Y+KCG+L  A R+F++   R+
Sbjct: 257 VLVGCANSGTLSLGKAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERN 316

Query: 251 VLTWTTMVSGYAKLGDMESASKLFNEMP-------------------------------- 278
           V++WT+M++GY + G  + A KL  +M                                 
Sbjct: 317 VVSWTSMIAGYTRDGRSDGAIKLLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHD 376

Query: 279 -------EKNPVSWTTLIAGYTRNGLGQKALELFTRM----------MILRIRPNQHTFS 321
                  E N      L+  Y + G  + A  +F+ M          MI  ++P+  T +
Sbjct: 377 YIKANNMESNLFVCNALMDMYAKCGSMEAANSVFSTMVVKDIISWNTMIGELKPDSRTMA 436

Query: 322 SCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNK 381
             L ACAS+ +L+ GK++HG+++R  + S+  V ++L+D+Y KCG L   R +FD+  +K
Sbjct: 437 CVLPACASLSALERGKEIHGYILRNGYSSDRHVANALVDLYVKCGVLGLARLLFDMIPSK 496

Query: 382 ENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTY 441
           +  + W  MI+    HGY  +AI  F++M  + ++PD+++   IL AC+HSGL+++G  +
Sbjct: 497 D-LVSWTVMIAGYGMHGYGNEAIATFNEMRDAGIEPDEVSFISILYACSHSGLLEQGWRF 555

Query: 442 FESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHG 501
           F  M +D  I P  EH+AC+++LL++ G   +    +E +P   D+ +W AL   CR + 
Sbjct: 556 FYIMKNDFNIEPKLEHYACMVDLLSRTGNLSKAYEFMETLPIAPDATIWGALLCGCRNYH 615

Query: 502 NIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWI 561
           +I++  KV +++ +  P+++  + LL++IY+   K   V+++R+ I ++  +K    SWI
Sbjct: 616 DIELAEKVAERVFELEPENTGYYVLLANIYAEAEKWEEVKRLREKIGKQGLRKNPGCSWI 675

Query: 562 EIENKVHAF-SVSDSLHPMRDVLYSVLEQLAGQMGEDA 598
           EI+ KV+ F S ++S HP    + S+L+++  +M E+ 
Sbjct: 676 EIKGKVNLFVSGNNSSHPHSKNIESLLKKMRRKMKEEG 713



 Score =  119 bits (299), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 90/351 (25%), Positives = 156/351 (44%), Gaps = 57/351 (16%)

Query: 11  NRKNLPNNCLIQSFLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKL 70
           +R  +  N +I  +   +S G     +     +   GI +   T+  +L  CA S +L L
Sbjct: 213 DRDVISWNSMISGY---VSNGLTERGLGIYKQMMYLGIDVDLATIISVLVGCANSGTLSL 269

Query: 71  GKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYA 130
           GK VH  L +          SN L+ MY KCG    A +VF+K+  +N+ S+ +M++GY 
Sbjct: 270 GKAVH-SLAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYT 328

Query: 131 NLGMMKHARNLFDNMAER----DVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEF 186
             G    A  L   M +     DVV+  +++   A+SG+++ G   +  ++  ++  N F
Sbjct: 329 RDGRSDGAIKLLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHDYIKANNMESNLF 388

Query: 187 ---------------------------------------------SFAGILTICVKLEEL 201
                                                        + A +L  C  L  L
Sbjct: 389 VCNALMDMYAKCGSMEAANSVFSTMVVKDIISWNTMIGELKPDSRTMACVLPACASLSAL 448

Query: 202 KLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGY 261
           +  +++HG +L  G+ S+  +++++VD Y KCG L  AR LFD   ++D+++WT M++GY
Sbjct: 449 ERGKEIHGYILRNGYSSDRHVANALVDLYVKCGVLGLARLLFDMIPSKDLVSWTVMIAGY 508

Query: 262 AKLGDMESASKLFNEMP----EKNPVSWTTLIAGYTRNGLGQKALELFTRM 308
              G    A   FNEM     E + VS+ +++   + +GL ++    F  M
Sbjct: 509 GMHGYGNEAIATFNEMRDAGIEPDEVSFISILYACSHSGLLEQGWRFFYIM 559



 Score = 89.4 bits (220), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 82/328 (25%), Positives = 126/328 (38%), Gaps = 78/328 (23%)

Query: 21  IQSFLSLIS----KGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHL 76
           + S+ S+I+     G+   AI  L  + + G++L    +  IL  CA S SL  GK VH 
Sbjct: 317 VVSWTSMIAGYTRDGRSDGAIKLLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHD 376

Query: 77  HLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSG-------- 128
           ++K    ++   F+ N L+ MY KCGS   A  VF  + VK++ S+N M+          
Sbjct: 377 YIKANNMES-NLFVCNALMDMYAKCGSMEAANSVFSTMVVKDIISWNTMIGELKPDSRTM 435

Query: 129 -----------------------------------------YANLGMMKHARNLFDNMAE 147
                                                    Y   G++  AR LFD +  
Sbjct: 436 ACVLPACASLSALERGKEIHGYILRNGYSSDRHVANALVDLYVKCGVLGLARLLFDMIPS 495

Query: 148 RDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQV 207
           +D+VSW  MI GY   G   E +  +  +R   I  +E SF  IL  C            
Sbjct: 496 KDLVSWTVMIAGYGMHGYGNEAIATFNEMRDAGIEPDEVSFISILYAC-----------S 544

Query: 208 HGQVLVTGFLSNVVIS------------SSIVDAYAKCGELSDARRLFDETD-ARDVLTW 254
           H  +L  G+    ++             + +VD  ++ G LS A    +    A D   W
Sbjct: 545 HSGLLEQGWRFFYIMKNDFNIEPKLEHYACMVDLLSRTGNLSKAYEFMETLPIAPDATIW 604

Query: 255 TTMVSGYAKLGDMESASKLFNEMPEKNP 282
             ++ G     D+E A K+   + E  P
Sbjct: 605 GALLCGCRNYHDIELAEKVAERVFELEP 632


>gi|242061948|ref|XP_002452263.1| hypothetical protein SORBIDRAFT_04g022670 [Sorghum bicolor]
 gi|241932094|gb|EES05239.1| hypothetical protein SORBIDRAFT_04g022670 [Sorghum bicolor]
          Length = 603

 Score =  328 bits (842), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 183/556 (32%), Positives = 305/556 (54%), Gaps = 17/556 (3%)

Query: 53  ETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFD 112
           E +  + +  +    L+LG+ VH  L  T   T  T LSN L+++Y +  S   A   FD
Sbjct: 37  ELIPLLERAISTGDVLRLGRAVHARLVKTA-LTSHTLLSNRLVALYSRLPSSAAAVAAFD 95

Query: 113 KIPVKNLFSYNNMLSGY-ANLGMMKHARNLFDNMAE--RDVVSWNTMIIGYAKSGAVEEG 169
            +P KN  SYN +L+           A +LFD M    R++VS+NT++      G   E 
Sbjct: 96  DLPHKNAHSYNTLLAALLRRPDTFPDALHLFDTMPADARNLVSYNTLMSSLVHHGRQAEA 155

Query: 170 LKFYKVLRR-----FSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISS 224
           L+    L R       ++ + F+   + T C  +   +  R++HG V+V+G    V++++
Sbjct: 156 LRVVARLARDRFLGPGLAMDRFTVVSVATACAGIRAARPLREMHGAVVVSGMELTVIMAN 215

Query: 225 SIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVS 284
           ++V+AY+K   + +AR LFD+   RD +TWT+M+SGY ++  ++ A ++F+ MP+K+ V+
Sbjct: 216 AMVNAYSKAWRVEEARHLFDQISIRDNVTWTSMISGYCQVKKLDEALQVFDMMPDKDRVA 275

Query: 285 WTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLI 344
           WT LI+G+ +NG    ALELF RM+   + P      S L ACA +  +  GK++H  ++
Sbjct: 276 WTALISGHEQNGEEDTALELFERMLAEGVSPTTFALVSVLGACAKLGLVTRGKELHCSIL 335

Query: 345 RTNFRS---NTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDE 401
           R +  S   N  + ++L+DMYSKCG +     VF     + + + WN+M++  + +G  +
Sbjct: 336 RRSIGSDPFNIFIHNALVDMYSKCGDMTAAMAVFHRMPER-DFISWNSMVTGFSHNGLGK 394

Query: 402 QAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACL 461
           Q++ +F +M+ + V+P  +T   +L AC+HSGLV  G    ESM  D G+ P  EH+A  
Sbjct: 395 QSLAIFEEMLVAGVRPTHVTFLAVLTACSHSGLVSNGRLILESM-EDHGVEPRAEHYAAF 453

Query: 462 IELLAQAGCSDQLMNQLEKMPYE---HDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNP 518
           I+ L +    ++ +  ++ +P       +  W AL G CR+HGNI++  +V + L    P
Sbjct: 454 IDALGRNRQLEEAIEFIKDLPSRIGPGTAGSWGALLGACRLHGNIELAEEVAEFLFKLEP 513

Query: 519 QSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHP 578
            +S  + +LS+IY+A G+     +VR L+ E+  KK+QA SWIE+ +  H F   D  H 
Sbjct: 514 GNSGRYVMLSNIYAAAGQWDDARRVRGLMKEKGLKKDQAYSWIEVRSLKHVFVADDMSHC 573

Query: 579 MRDVLYSVLEQLAGQM 594
             D +Y +L +L   M
Sbjct: 574 EADEIYEMLGKLLDHM 589



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 38/145 (26%), Positives = 71/145 (48%), Gaps = 6/145 (4%)

Query: 31  GQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLH-LKLTQRKTP-TT 88
           G+   A+   + +   G+      L  +L  CA+   +  GK +H   L+ +    P   
Sbjct: 287 GEEDTALELFERMLAEGVSPTTFALVSVLGACAKLGLVTRGKELHCSILRRSIGSDPFNI 346

Query: 89  FLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAER 148
           F+ N L+ MY KCG    A  VF ++P ++  S+N+M++G+++ G+ K +  +F+ M   
Sbjct: 347 FIHNALVDMYSKCGDMTAAMAVFHRMPERDFISWNSMVTGFSHNGLGKQSLAIFEEMLVA 406

Query: 149 DV----VSWNTMIIGYAKSGAVEEG 169
            V    V++  ++   + SG V  G
Sbjct: 407 GVRPTHVTFLAVLTACSHSGLVSNG 431


>gi|357495039|ref|XP_003617808.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355519143|gb|AET00767.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 811

 Score =  328 bits (842), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 171/473 (36%), Positives = 273/473 (57%), Gaps = 32/473 (6%)

Query: 118 NLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLR 177
           +LF    +L  YA  G +  A+ LF+ M + D++ W+ MI  YA+S   +E L  +  +R
Sbjct: 271 DLFVGIALLELYAKSGEIIDAQRLFEEMPKTDLIPWSLMIARYAQSDRSKEALDLFLRMR 330

Query: 178 RFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELS 237
           + S+  N F+FA +L  C     L L +Q+H  VL  G  SNV +S++I+D YAKCG   
Sbjct: 331 QTSVVPNNFTFASVLQACASSVSLDLGKQIHSCVLKFGLNSNVFVSNAIMDVYAKCG--- 387

Query: 238 DARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGL 297
                                       ++E++ KLF E+P++N V+W T+I GY + G 
Sbjct: 388 ----------------------------EIENSMKLFEELPDRNDVTWNTIIVGYVQLGD 419

Query: 298 GQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSS 357
           G++A+ LFT M+   ++P + T+SS L A AS+ +L+ G Q+H   I+T +  +T+V +S
Sbjct: 420 GERAMNLFTHMLEHDMQPTEVTYSSVLRASASLAALEPGLQIHSLTIKTMYNKDTVVANS 479

Query: 358 LIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKP 417
           LIDMY+KCG +ND R  FD   NK + + WN MI   + HG   +A+ LF  M  +  KP
Sbjct: 480 LIDMYAKCGRINDARLTFDKM-NKRDEVSWNAMICGYSMHGMSMEALNLFDMMQHTDCKP 538

Query: 418 DKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQ 477
           +K+T   +L+AC+++GL+ +G  +FESM+ D  I P  EH+ C++ LL + G  D+ M  
Sbjct: 539 NKLTFVGVLSACSNAGLLYKGQAHFESMSKDYDIKPCIEHYTCMVWLLGRLGRFDEAMKL 598

Query: 478 LEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKG 537
           + ++ Y+    +W AL G C IH  +D+GR     +++  P   ATH LLS++Y+  G+ 
Sbjct: 599 IGEIAYQPSVMVWRALLGACVIHKKVDLGRVCAQHVLEMEPHDDATHVLLSNMYATAGRW 658

Query: 538 RLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQL 590
             V  VR+ + +++ +KE  +SW+E +  VH FSV D+ HP   ++ ++LE L
Sbjct: 659 DNVAFVRKYMQKKKVRKEPGLSWVENQGVVHYFSVGDTSHPDIKLICAMLEWL 711



 Score =  177 bits (448), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 120/427 (28%), Positives = 212/427 (49%), Gaps = 46/427 (10%)

Query: 120 FSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRF 179
           F    ++  Y+  G +  AR++FD++  +D+VSW  M+  YA++   EE L+ +  +R  
Sbjct: 172 FVGTALIDAYSVRGNVDVARHVFDDICCKDMVSWTGMVACYAENCFYEESLQLFNQMRIM 231

Query: 180 SISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDA 239
               N F+ +G L  C+ LE   + + VHG  L   +  ++ +  ++++ YAK GE+ DA
Sbjct: 232 GYKPNNFTISGALKSCLGLEAFNVGKSVHGCALKGCYDHDLFVGIALLELYAKSGEIIDA 291

Query: 240 RRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQ 299
           +RLF+E    D++ W+ M++ YA+                               +   +
Sbjct: 292 QRLFEEMPKTDLIPWSLMIARYAQ-------------------------------SDRSK 320

Query: 300 KALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLI 359
           +AL+LF RM    + PN  TF+S L ACAS VSL  GKQ+H  +++    SN  V ++++
Sbjct: 321 EALDLFLRMRQTSVVPNNFTFASVLQACASSVSLDLGKQIHSCVLKFGLNSNVFVSNAIM 380

Query: 360 DMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDK 419
           D+Y+KCG + +  ++F+   ++ N + WNT+I    Q G  E+A+ LF  M+   ++P +
Sbjct: 381 DVYAKCGEIENSMKLFEELPDR-NDVTWNTIIVGYVQLGDGERAMNLFTHMLEHDMQPTE 439

Query: 420 ITLAVILNACTHSGLVQEGLTY----FESMTHDLGIIPNQEHHACLIELLAQAGCSDQLM 475
           +T + +L A      ++ GL       ++M +   ++ N      LI++ A+ G  +   
Sbjct: 440 VTYSSVLRASASLAALEPGLQIHSLTIKTMYNKDTVVANS-----LIDMYAKCGRINDAR 494

Query: 476 NQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVD--QLIDQNPQSSATHGLLSSIYSA 533
              +KM  + D   WNA+     +HG       + D  Q  D  P      G+LS+  +A
Sbjct: 495 LTFDKMN-KRDEVSWNAMICGYSMHGMSMEALNLFDMMQHTDCKPNKLTFVGVLSACSNA 553

Query: 534 --LGKGR 538
             L KG+
Sbjct: 554 GLLYKGQ 560



 Score =  139 bits (349), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 99/406 (24%), Positives = 190/406 (46%), Gaps = 39/406 (9%)

Query: 93  HLISMYFKCGSDVDARK-----VFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAE 147
           H++    + G+D  A K     +  +    +LF+ N +L+ Y     ++ A  LFD M +
Sbjct: 39  HMLQQIIRNGADPIAGKHLHCHILKRGTSLDLFAQNILLNFYVQSNSLQDASKLFDEMPQ 98

Query: 148 RDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQV 207
            + +S+ T+  GY++     + L F   + +     N F F  +L + V ++   L   +
Sbjct: 99  TNTISFVTLAQGYSRDHQFHQALHFILRIFKEGHEVNPFVFTTLLKLLVSMDLAHLCWTL 158

Query: 208 HGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDM 267
           H  V   G  ++  + ++++DAY+  G +  AR +FD+   +D+++WT MV+ YA+    
Sbjct: 159 HACVYKLGHHADAFVGTALIDAYSVRGNVDVARHVFDDICCKDMVSWTGMVACYAE---- 214

Query: 268 ESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCAC 327
                                      N   +++L+LF +M I+  +PN  T S  L +C
Sbjct: 215 ---------------------------NCFYEESLQLFNQMRIMGYKPNNFTISGALKSC 247

Query: 328 ASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLW 387
             + +   GK VHG  ++  +  +  V  +L+++Y+K G + D +++F+    K + + W
Sbjct: 248 LGLEAFNVGKSVHGCALKGCYDHDLFVGIALLELYAKSGEIIDAQRLFEEMP-KTDLIPW 306

Query: 388 NTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTH 447
           + MI+   Q    ++A+ LF  M ++SV P+  T A +L AC  S  +  G     S   
Sbjct: 307 SLMIARYAQSDRSKEALDLFLRMRQTSVVPNNFTFASVLQACASSVSLDLG-KQIHSCVL 365

Query: 448 DLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNAL 493
             G+  N      ++++ A+ G  +  M   E++P  +D   WN +
Sbjct: 366 KFGLNSNVFVSNAIMDVYAKCGEIENSMKLFEELPDRND-VTWNTI 410



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 96/394 (24%), Positives = 173/394 (43%), Gaps = 77/394 (19%)

Query: 13  KNLPNNCLIQSFLSLISKGQLSEAISSLDL---LAQRGIRLPAETLAFILQQCAESKSLK 69
           + +P   LI   L +    Q   +  +LDL   + Q  +     T A +LQ CA S SL 
Sbjct: 296 EEMPKTDLIPWSLMIARYAQSDRSKEALDLFLRMRQTSVVPNNFTFASVLQACASSVSLD 355

Query: 70  LGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGY 129
           LGK++H    L        F+SN ++ +Y KCG   ++ K+F+++P +N  ++N ++ GY
Sbjct: 356 LGKQIH-SCVLKFGLNSNVFVSNAIMDVYAKCGEIENSMKLFEELPDRNDVTWNTIIVGY 414

Query: 130 ANLGMMKHARNLFDNMAERDV----VSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNE 185
             LG  + A NLF +M E D+    V++++++   A   A+E GL               
Sbjct: 415 VQLGDGERAMNLFTHMLEHDMQPTEVTYSSVLRASASLAALEPGL--------------- 459

Query: 186 FSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDE 245
                               Q+H   + T +  + V+++S++D YAKCG ++DAR  FD+
Sbjct: 460 --------------------QIHSLTIKTMYNKDTVVANSLIDMYAKCGRINDARLTFDK 499

Query: 246 TDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELF 305
            + RD ++W  M+ G                               Y+ +G+  +AL LF
Sbjct: 500 MNKRDEVSWNAMICG-------------------------------YSMHGMSMEALNLF 528

Query: 306 TRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIV--MSSLIDMYS 363
             M     +PN+ TF   L AC++   L  G Q H   +  ++     +   + ++ +  
Sbjct: 529 DMMQHTDCKPNKLTFVGVLSACSNAGLLYKG-QAHFESMSKDYDIKPCIEHYTCMVWLLG 587

Query: 364 KCGCLNDGRQVFDLTDNKENSMLWNTMISALTQH 397
           + G  ++  ++      + + M+W  ++ A   H
Sbjct: 588 RLGRFDEAMKLIGEIAYQPSVMVWRALLGACVIH 621



 Score = 62.8 bits (151), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 42/139 (30%), Positives = 70/139 (50%), Gaps = 4/139 (2%)

Query: 11  NRKNLPNNCLIQSFLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKL 70
           +R ++  N +I  ++ L   G    A++    + +  ++    T + +L+  A   +L+ 
Sbjct: 401 DRNDVTWNTIIVGYVQL---GDGERAMNLFTHMLEHDMQPTEVTYSSVLRASASLAALEP 457

Query: 71  GKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYA 130
           G ++H  L +       T ++N LI MY KCG   DAR  FDK+  ++  S+N M+ GY+
Sbjct: 458 GLQIH-SLTIKTMYNKDTVVANSLIDMYAKCGRINDARLTFDKMNKRDEVSWNAMICGYS 516

Query: 131 NLGMMKHARNLFDNMAERD 149
             GM   A NLFD M   D
Sbjct: 517 MHGMSMEALNLFDMMQHTD 535


>gi|125591422|gb|EAZ31772.1| hypothetical protein OsJ_15924 [Oryza sativa Japonica Group]
          Length = 855

 Score =  328 bits (842), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 172/581 (29%), Positives = 317/581 (54%), Gaps = 40/581 (6%)

Query: 26  SLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKT 85
           +L   G++ EA+  +  + ++G+RL + T    L  CA   SL  GK++H          
Sbjct: 234 ALSQSGRVREALGLVVEMHRKGVRLDSTTYTSSLTACARLFSLGWGKQLH---------- 283

Query: 86  PTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNM 145
                                  KV   +P  + +  + ++  YA  G  K A+ +F+++
Sbjct: 284 ----------------------AKVIRSLPQIDPYVASALIELYAKCGSFKEAKRVFNSL 321

Query: 146 AERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTR 205
            +R+ VSW  +I G  +     + ++ +  +R   ++ ++F+ A +++ C    +L L R
Sbjct: 322 QDRNSVSWTVLIGGSLQYECFSKSVELFNQMRAELMAIDQFALATLISGCFNRMDLCLGR 381

Query: 206 QVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLG 265
           Q+H   L +G    +V+S+S++  YAKCG+L +A  +F     RD+++WT+M++ Y+++G
Sbjct: 382 QLHSLCLKSGHNRAIVVSNSLISLYAKCGDLQNAEFVFSSMSERDIVSWTSMITAYSQIG 441

Query: 266 DMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILR-IRPNQHTFSSCL 324
           ++  A + F+ M  +N ++W  ++  Y ++G  +  L++++ M+  + + P+  T+ +  
Sbjct: 442 NIIKAREFFDGMATRNAITWNAMLGAYIQHGAEEDGLKMYSAMLSQKDVTPDWVTYVTLF 501

Query: 325 CACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENS 384
             CA I + K G Q+ G  ++     N  V ++ I MYSKCG +++ +++FDL + K+  
Sbjct: 502 RGCADIGANKLGDQIIGHTVKAGLILNVSVANAAITMYSKCGRISEAQKLFDLLNGKD-V 560

Query: 385 MLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFES 444
           + WN MI+  +QHG  +QA + F DM+    KPD I+   +L+ C+HSGLVQEG  YF+ 
Sbjct: 561 VSWNAMITGYSQHGMGKQAAKTFDDMLSKGAKPDYISYVAVLSGCSHSGLVQEGKLYFDM 620

Query: 445 MTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNID 504
           MT   GI P  EH +C+++LL +AG   +  + ++KMP +  + +W AL   C+IHGN +
Sbjct: 621 MTRVHGISPGLEHFSCMVDLLGRAGHLTEAKDLIDKMPMKPTAEVWGALLSACKIHGNDE 680

Query: 505 MGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIE 564
           +       + + +   S ++ LL+ IYS  GK     +VR+L+ ++  KK    SW+E+E
Sbjct: 681 LAELAAKHVFELDSPDSGSYMLLAKIYSDAGKSDDSAQVRKLMRDKGIKKNPGYSWMEVE 740

Query: 565 NKVHAFSVSDSLHP----MRDVLYSVLEQLA--GQMGEDAP 599
           NKVH F   D  HP    +R+ +  ++E++A  G +  ++P
Sbjct: 741 NKVHVFKADDVSHPQVIAIRNKMDELMEKIAHLGYVRTESP 781



 Score =  180 bits (457), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 111/378 (29%), Positives = 191/378 (50%), Gaps = 28/378 (7%)

Query: 53  ETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFD 112
           + LA  L+ C    +L   + +H  L +T       FL N L+  Y  CG+  DAR++  
Sbjct: 21  QALADALRSCGSRGALAGARALHGRL-VTVGLASAVFLQNTLLHAYLSCGALSDARRLLR 79

Query: 113 K-IPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLK 171
             I   N+ ++N M++GYA  G +  A  LFD M  RDV SWNT++   ++         
Sbjct: 80  ADIKEPNVITHNIMMNGYAKQGSLSDAEELFDRMPRRDVASWNTLMSDTSRP-------- 131

Query: 172 FYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYA 231
                            AG    C  L   +L  Q+ G      F  +  + +++VD + 
Sbjct: 132 -----------------AGSWMSCGALGCRELAPQLLGLFWKFDFWGDPDVETALVDMFV 174

Query: 232 KCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAG 291
           +CG +  A RLF + +   +    +M++GYAKL  ++ A + F +M E++ VSW  +IA 
Sbjct: 175 RCGYVDFASRLFSQIERPTIFCRNSMLAGYAKLYGIDHAIEYFEDMAERDVVSWNMMIAA 234

Query: 292 YTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSN 351
            +++G  ++AL L   M    +R +  T++S L ACA + SL  GKQ+H  +IR+  + +
Sbjct: 235 LSQSGRVREALGLVVEMHRKGVRLDSTTYTSSLTACARLFSLGWGKQLHAKVIRSLPQID 294

Query: 352 TIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMV 411
             V S+LI++Y+KCG   + ++VF+   ++ NS+ W  +I    Q+    +++ LF+ M 
Sbjct: 295 PYVASALIELYAKCGSFKEAKRVFNSLQDR-NSVSWTVLIGGSLQYECFSKSVELFNQMR 353

Query: 412 RSSVKPDKITLAVILNAC 429
              +  D+  LA +++ C
Sbjct: 354 AELMAIDQFALATLISGC 371



 Score =  164 bits (416), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 104/385 (27%), Positives = 187/385 (48%), Gaps = 41/385 (10%)

Query: 94  LISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSW 153
           L+ M+ +CG    A ++F +I    +F  N+ML+GYA L  + HA   F++MAERDVVSW
Sbjct: 169 LVDMFVRCGYVDFASRLFSQIERPTIFCRNSMLAGYAKLYGIDHAIEYFEDMAERDVVSW 228

Query: 154 NTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLV 213
           N MI   ++SG V E L     + R  +  +  ++   LT C +L  L   +Q+H +V+ 
Sbjct: 229 NMMIAALSQSGRVREALGLVVEMHRKGVRLDSTTYTSSLTACARLFSLGWGKQLHAKVIR 288

Query: 214 TGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKL 273
           +    +  ++S++++ YAKCG   +A+R+F+    R+ ++WT ++ G  +      + +L
Sbjct: 289 SLPQIDPYVASALIELYAKCGSFKEAKRVFNSLQDRNSVSWTVLIGGSLQYECFSKSVEL 348

Query: 274 FNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSL 333
           FN+M                             R  ++ I  +Q   ++ +  C + + L
Sbjct: 349 FNQM-----------------------------RAELMAI--DQFALATLISGCFNRMDL 377

Query: 334 KHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISA 393
             G+Q+H   +++      +V +SLI +Y+KCG L +   VF  + ++ + + W +MI+A
Sbjct: 378 CLGRQLHSLCLKSGHNRAIVVSNSLISLYAKCGDLQNAEFVFS-SMSERDIVSWTSMITA 436

Query: 394 LTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIP 453
            +Q G   +A   F  M       + IT   +L A    G  ++GL  + +M     + P
Sbjct: 437 YSQIGNIIKAREFFDGMATR----NAITWNAMLGAYIQHGAEEDGLKMYSAMLSQKDVTP 492

Query: 454 NQEHHACLIELLAQAGCSDQLMNQL 478
           +   +  L       GC+D   N+L
Sbjct: 493 DWVTYVTLFR-----GCADIGANKL 512



 Score = 44.7 bits (104), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 28/106 (26%), Positives = 48/106 (45%), Gaps = 2/106 (1%)

Query: 312 RIRPNQHT--FSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLN 369
           R+ P+  T   +  L +C S  +L   + +HG L+     S   + ++L+  Y  CG L+
Sbjct: 13  RLLPHAVTQALADALRSCGSRGALAGARALHGRLVTVGLASAVFLQNTLLHAYLSCGALS 72

Query: 370 DGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSV 415
           D R++      + N +  N M++   + G    A  LF  M R  V
Sbjct: 73  DARRLLRADIKEPNVITHNIMMNGYAKQGSLSDAEELFDRMPRRDV 118


>gi|115443695|ref|NP_001045627.1| Os02g0106300 [Oryza sativa Japonica Group]
 gi|50252103|dbj|BAD28089.1| putative pentatricopeptide (PPR) repeat-containing protein-like
           protein [Oryza sativa Japonica Group]
 gi|113535158|dbj|BAF07541.1| Os02g0106300 [Oryza sativa Japonica Group]
 gi|215766741|dbj|BAG98969.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 751

 Score =  328 bits (842), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 177/592 (29%), Positives = 310/592 (52%), Gaps = 35/592 (5%)

Query: 11  NRKNLPNNCLIQSFLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKL 70
            R  +  N LI  F S  S  +  +   +L  L +  +R    TL+ ++   +      L
Sbjct: 107 ERDAVSYNALITGFSSTGSPARSVQLYRAL--LREESVRPTRITLSAMIMVASALSDRAL 164

Query: 71  GKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYA 130
           G  VH  + L        F+ + L+ MY K G   DAR+VF ++  K +  YN +++G  
Sbjct: 165 GHSVHCQV-LRLGFGAYAFVGSPLVDMYAKMGLIRDARRVFQEMEAKTVVMYNTLITGLL 223

Query: 131 NLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAG 190
              M++ A+ LF  M +RD ++W TM+ G  ++G   E L  ++ +R   +  ++++F  
Sbjct: 224 RCKMIEDAKGLFQLMVDRDSITWTTMVTGLTQNGLQLEALDVFRRMRAEGVGIDQYTFGS 283

Query: 191 ILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARD 250
           ILT C  L  L+  +Q+H  +  T +  NV + S++VD Y+KC  +    RL        
Sbjct: 284 ILTACGALAALEEGKQIHAYITRTWYEDNVFVGSALVDMYSKCRSI----RL-------- 331

Query: 251 VLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMI 310
                              A  +F  M  +N +SWT +I GY +N   ++A+  F+ M +
Sbjct: 332 -------------------AEAVFRRMTCRNIISWTAMIVGYGQNACSEEAVRAFSEMQM 372

Query: 311 LRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLND 370
             I+P+  T  S + +CA++ SL+ G Q H   + +       V ++L+ +Y KCG + D
Sbjct: 373 DGIKPDDFTLGSVISSCANLASLEEGAQFHCLALVSGLMRYITVSNALVTLYGKCGSIED 432

Query: 371 GRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACT 430
             ++FD   +  + + W  +++   Q G  ++ I LF  M+ + +KPD +T   +L+AC+
Sbjct: 433 AHRLFDEM-SFHDQVSWTALVTGYAQFGKAKETIDLFEKMLANGLKPDGVTFIGVLSACS 491

Query: 431 HSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLW 490
            +GLV++G  YF+SM  D GI+P  +H+ C+I+L +++G   +    +++MP+  D++ W
Sbjct: 492 RAGLVEKGCDYFDSMQKDHGIVPIDDHYTCMIDLYSRSGRFKEAEEFIKQMPHSPDAFGW 551

Query: 491 NALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINER 550
             L   CR+ GN+++G+   + L++ +PQ+ A++ LL S+++A G+   V  +R+ + +R
Sbjct: 552 ATLLSSCRLRGNMEIGKWAAENLLETDPQNPASYVLLCSMHAAKGQWTEVAHLRRGMRDR 611

Query: 551 QFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQMGEDAPSLD 602
           Q KKE   SWI+ +NKVH FS  D  HP    +Y  LE L  +M E+    D
Sbjct: 612 QVKKEPGCSWIKYKNKVHIFSADDQSHPFSSRIYEKLEWLNSKMAEEGYKPD 663



 Score =  263 bits (672), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 141/427 (33%), Positives = 236/427 (55%), Gaps = 4/427 (0%)

Query: 68  LKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLS 127
           +++   VH  +  T  + P TFL NHL++ Y K G    AR+VFD++P  NLF+ N +LS
Sbjct: 28  VRVAGAVHCLILKTFLQAPPTFLLNHLLTAYAKSGRLARARRVFDEMPDPNLFTRNALLS 87

Query: 128 GYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYK-VLRRFSISCNEF 186
             A+  ++     LF +M ERD VS+N +I G++ +G+    ++ Y+ +LR  S+     
Sbjct: 88  ALAHSRLVPDMERLFASMPERDAVSYNALITGFSSTGSPARSVQLYRALLREESVRPTRI 147

Query: 187 SFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDET 246
           + + ++ +   L +  L   VH QVL  GF +   + S +VD YAK G + DARR+F E 
Sbjct: 148 TLSAMIMVASALSDRALGHSVHCQVLRLGFGAYAFVGSPLVDMYAKMGLIRDARRVFQEM 207

Query: 247 DARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFT 306
           +A+ V+ + T+++G  +   +E A  LF  M +++ ++WTT++ G T+NGL  +AL++F 
Sbjct: 208 EAKTVVMYNTLITGLLRCKMIEDAKGLFQLMVDRDSITWTTMVTGLTQNGLQLEALDVFR 267

Query: 307 RMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCG 366
           RM    +  +Q+TF S L AC ++ +L+ GKQ+H ++ RT +  N  V S+L+DMYSKC 
Sbjct: 268 RMRAEGVGIDQYTFGSILTACGALAALEEGKQIHAYITRTWYEDNVFVGSALVDMYSKCR 327

Query: 367 CLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVIL 426
            +     VF     + N + W  MI    Q+   E+A+R F +M    +KPD  TL  ++
Sbjct: 328 SIRLAEAVFRRMTCR-NIISWTAMIVGYGQNACSEEAVRAFSEMQMDGIKPDDFTLGSVI 386

Query: 427 NACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHD 486
           ++C +   ++EG   F  +    G++        L+ L  + G  +      ++M + HD
Sbjct: 387 SSCANLASLEEG-AQFHCLALVSGLMRYITVSNALVTLYGKCGSIEDAHRLFDEMSF-HD 444

Query: 487 SYLWNAL 493
              W AL
Sbjct: 445 QVSWTAL 451


>gi|225462731|ref|XP_002267928.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic [Vitis vinifera]
 gi|302143682|emb|CBI22543.3| unnamed protein product [Vitis vinifera]
          Length = 728

 Score =  328 bits (841), Expect = 5e-87,   Method: Compositional matrix adjust.
 Identities = 187/629 (29%), Positives = 322/629 (51%), Gaps = 67/629 (10%)

Query: 31  GQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFL 90
           G+ SEA+  +  + +  ++L   T + +L  CA  + L+ GK +H  L L         +
Sbjct: 77  GRFSEALFLVYSMHRSHMKLSESTFSSVLSVCARLRCLRDGKLIHC-LVLKSGSESFELV 135

Query: 91  SNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDV 150
            + L+  Y  C    +AR+VFD +  +N   ++ ML GY    +M  A ++F  M  RDV
Sbjct: 136 GSALLYFYASCFEIGEARRVFDVLVRRNEVLWSLMLVGYVTCNVMDDALSVFVKMPRRDV 195

Query: 151 VSWNTMIIGYAKSG-AVEEGLKFYKV-LRRFSISCNEFSFAGILTICVKLEELKLTRQVH 208
           V+W T+I G++K+G    + L+ +++ +R    + NEF+F  ++  C +L  L + R VH
Sbjct: 196 VAWTTLISGFSKNGDGCGKALEIFRLMMRSGETTPNEFTFDCVVRACGRLGILSVGRTVH 255

Query: 209 GQVLVTGFLSNVVISSSIVDAYAKC-------------------------------GELS 237
           G ++  G   +  I  ++V+ Y +C                               G + 
Sbjct: 256 GLLMKCGLEYDPSIGGALVEFYCECEAIDDALRVCKGVVNPCLNALNSLIEGLISMGRIE 315

Query: 238 DARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMP------------------- 278
           DA  +F+     + +++  M+ GYA  G M+ + +LF +MP                   
Sbjct: 316 DAELVFNGMTEMNPVSYNLMIKGYAVGGQMDDSKRLFEKMPCRTIFSSNTMISVYSRNGE 375

Query: 279 -------------EKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLC 325
                        EK+PV+W ++I+GY  +G  ++AL+L+  M  L I+  Q TFS+   
Sbjct: 376 IDKALELFEETKNEKDPVTWNSMISGYIHSGQPEEALKLYITMHRLSIQQTQSTFSALFH 435

Query: 326 ACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSM 385
           AC+ + SL  G+ +H  LI+T F SN  V +SLIDMYSKCG + + +  F ++    N  
Sbjct: 436 ACSCLGSLHQGQLLHAHLIKTPFESNVYVGTSLIDMYSKCGSIMEAQTSF-VSIFSPNVA 494

Query: 386 LWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESM 445
            W  +I+    HG   +AI LF  M+   + P+  T   +L+AC+ +GLV EG+  F SM
Sbjct: 495 AWTALINGHAYHGLGSEAISLFDRMIEQGLAPNGATFVGVLSACSRAGLVNEGMKIFHSM 554

Query: 446 THDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDM 505
                + P  EH+AC+++LL ++G   +    ++KMP E D  +W AL   C    ++++
Sbjct: 555 ERCYSVTPTLEHYACVVDLLGRSGHIREAEEFIKKMPLEADGVVWGALLSACWFWMDLEV 614

Query: 506 GRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIEN 565
           G +V +++   +P+  +++ +LS+IY+ LG+ R    VR+++   + KK+   SWIE+ N
Sbjct: 615 GERVAEKMFSFDPKPISSYVILSNIYAGLGRWREKMMVRKILRGFKVKKDPGCSWIELNN 674

Query: 566 KVHAFSVSDSLHPMRDVLYSVLEQLAGQM 594
           K+H FS+ D  HP  +++Y+ LE L   +
Sbjct: 675 KIHVFSIEDRSHPYCNMIYATLEHLTANI 703



 Score =  180 bits (456), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 118/394 (29%), Positives = 199/394 (50%), Gaps = 17/394 (4%)

Query: 116 VKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKV 175
           +  + S N  +S YA    +  AR LFD M +R VVSWNTMI  Y+K G   E L     
Sbjct: 29  LSEIISTNIAISNYAKQSKLDVARQLFDQMPQRTVVSWNTMISSYSKHGRFSEALFLVYS 88

Query: 176 LRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGE 235
           + R  +  +E +F+ +L++C +L  L+  + +H  VL +G  S  ++ S+++  YA C E
Sbjct: 89  MHRSHMKLSESTFSSVLSVCARLRCLRDGKLIHCLVLKSGSESFELVGSALLYFYASCFE 148

Query: 236 LSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRN 295
           + +ARR+FD    R+ + W+ M+ GY     M+ A  +F +MP ++ V+WTTLI+G+++N
Sbjct: 149 IGEARRVFDVLVRRNEVLWSLMLVGYVTCNVMDDALSVFVKMPRRDVVAWTTLISGFSKN 208

Query: 296 GLG-QKALELFTRMMIL-RIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTI 353
           G G  KALE+F  MM      PN+ TF   + AC  +  L  G+ VHG L++     +  
Sbjct: 209 GDGCGKALEIFRLMMRSGETTPNEFTFDCVVRACGRLGILSVGRTVHGLLMKCGLEYDPS 268

Query: 354 VMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRS 413
           +  +L++ Y +C  ++D  +V     N   + L N++I  L   G  E A  +F+ M   
Sbjct: 269 IGGALVEFYCECEAIDDALRVCKGVVNPCLNAL-NSLIEGLISMGRIEDAELVFNGM--- 324

Query: 414 SVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQ 473
             + + ++  +++      G + +    FE M        N      +I + ++ G  D+
Sbjct: 325 -TEMNPVSYNLMIKGYAVGGQMDDSKRLFEKMPCRTIFSSNT-----MISVYSRNGEIDK 378

Query: 474 LMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGR 507
            +   E+   E D   WN++     I G I  G+
Sbjct: 379 ALELFEETKNEKDPVTWNSM-----ISGYIHSGQ 407



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 85/340 (25%), Positives = 162/340 (47%), Gaps = 51/340 (15%)

Query: 245 ETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALEL 304
           +++  ++++    +S YAK   ++ A +LF++MP++  VSW T+I+ Y+++G   +AL L
Sbjct: 26  QSNLSEIISTNIAISNYAKQSKLDVARQLFDQMPQRTVVSWNTMISSYSKHGRFSEALFL 85

Query: 305 FTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSK 364
              M    ++ ++ TFSS L  CA +  L+ GK +H  ++++   S  +V S+L+  Y+ 
Sbjct: 86  VYSMHRSHMKLSESTFSSVLSVCARLRCLRDGKLIHCLVLKSGSESFELVGSALLYFYAS 145

Query: 365 CGCLNDGRQVFD-----------------LTDN-------------KENSMLWNTMISAL 394
           C  + + R+VFD                 +T N             + + + W T+IS  
Sbjct: 146 CFEIGEARRVFDVLVRRNEVLWSLMLVGYVTCNVMDDALSVFVKMPRRDVVAWTTLISGF 205

Query: 395 TQHGYD-EQAIRLFHDMVRSS-VKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGII 452
           +++G    +A+ +F  M+RS    P++ T   ++ AC   G++  G T      H L + 
Sbjct: 206 SKNGDGCGKALEIFRLMMRSGETTPNEFTFDCVVRACGRLGILSVGRT-----VHGLLMK 260

Query: 453 PNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGR----- 507
              E+   +   L +  C  + ++   ++     +   NAL+ +  I G I MGR     
Sbjct: 261 CGLEYDPSIGGALVEFYCECEAIDDALRVCKGVVNPCLNALNSL--IEGLISMGRIEDAE 318

Query: 508 KVVDQLIDQNPQSSATHGLLSSIYSALGK----GRLVEKV 543
            V + + + NP S   + L+   Y+  G+     RL EK+
Sbjct: 319 LVFNGMTEMNPVS---YNLMIKGYAVGGQMDDSKRLFEKM 355



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 45/158 (28%), Positives = 77/158 (48%), Gaps = 11/158 (6%)

Query: 28  ISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTP- 86
           I  GQ  EA+     + +  I+    T + +   C+   SL  G+ +H HL     KTP 
Sbjct: 403 IHSGQPEEALKLYITMHRLSIQQTQSTFSALFHACSCLGSLHQGQLLHAHLI----KTPF 458

Query: 87  --TTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDN 144
               ++   LI MY KCGS ++A+  F  I   N+ ++  +++G+A  G+   A +LFD 
Sbjct: 459 ESNVYVGTSLIDMYSKCGSIMEAQTSFVSIFSPNVAAWTALINGHAYHGLGSEAISLFDR 518

Query: 145 MAERDVVSWNTMIIGY----AKSGAVEEGLKFYKVLRR 178
           M E+ +       +G     +++G V EG+K +  + R
Sbjct: 519 MIEQGLAPNGATFVGVLSACSRAGLVNEGMKIFHSMER 556


>gi|449437737|ref|XP_004136647.1| PREDICTED: pentatricopeptide repeat-containing protein At2g35030,
           mitochondrial-like [Cucumis sativus]
          Length = 649

 Score =  328 bits (841), Expect = 5e-87,   Method: Compositional matrix adjust.
 Identities = 170/513 (33%), Positives = 300/513 (58%), Gaps = 10/513 (1%)

Query: 94  LISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSW 153
           L+S Y +     +AR++FD +PVKN+ S+N M+ GYA  G +  A +LF+ M ER+VVSW
Sbjct: 135 LVSGYVRWNRIEEARRLFDAMPVKNVISWNTMIEGYARKGWIDQALDLFEKMPERNVVSW 194

Query: 154 NTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLV 213
           NT+I  + +   V+E  + +  +    +     S+  ++    K   +   R +  ++ V
Sbjct: 195 NTVITAFMQRRRVDEAQELFNRMPERDV----ISWTTMVAGLSKNGRIDDARLLFDKMPV 250

Query: 214 TGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKL 273
                NVV  ++++  YA+   L +A +LF++   R++ +W TM++G+ + G +E A   
Sbjct: 251 ----RNVVSWNTMIIGYAQNMRLDEAFKLFEQMPERELSSWNTMITGFIQNGKLERAVDF 306

Query: 274 FNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILR-IRPNQHTFSSCLCACASIVS 332
           F +M  KN V+WT +I+G+ ++G  ++AL++F+ M     ++PN+ TF S L AC+ + +
Sbjct: 307 FYKMSNKNVVTWTAVISGHVQDGRSEEALKIFSEMQAANNVKPNEGTFVSVLGACSKLAA 366

Query: 333 LKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFD-LTDNKENSMLWNTMI 391
           L  G+Q+H  + +T ++    V+S+LI+MYSKCG L   R++FD  +    + + WN MI
Sbjct: 367 LCEGQQIHQIISKTVYQEVADVVSALINMYSKCGELELARKIFDDGSIGHRDVVSWNGMI 426

Query: 392 SALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGI 451
           +A   HG+  +AI LF +M     +PD +T   +L+AC+H+GLV EGL  FE++  D  I
Sbjct: 427 AAYAHHGHGHKAISLFDEMQALGFRPDNVTYIALLSACSHAGLVDEGLKLFENLVRDRSI 486

Query: 452 IPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVD 511
              ++H  CL++L  +AG   +  + ++ +  +  + +W AL   C +HG+ID+G+   +
Sbjct: 487 KLREDHFTCLVDLFGRAGRLQEAFDFIKGLEVKPSASVWAALLAGCNVHGHIDLGKLTAE 546

Query: 512 QLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFS 571
           +L++  P+++ T+ +LS+IY++ GK R    VR  + ++  KK+   SWIE+ N VH F 
Sbjct: 547 KLLETEPENAGTYLVLSNIYASTGKWREAAGVRMKMKDKGLKKQPGCSWIEVGNTVHVFV 606

Query: 572 VSDSLHPMRDVLYSVLEQLAGQMGEDAPSLDAD 604
           V D+ H   + +Y +L  L  +M +   +L  D
Sbjct: 607 VGDNSHREFENIYLLLHDLHTKMKKIGHTLYED 639



 Score =  138 bits (348), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 105/399 (26%), Positives = 184/399 (46%), Gaps = 58/399 (14%)

Query: 118 NLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLR 177
           N+   N +++     G +  AR +F+ M +RDVVSW  +I GY K G +EE    +   R
Sbjct: 65  NVARSNWLITQLGKEGKIGEARQVFEEMPDRDVVSWTAVITGYIKCGMIEEAKTLFD--R 122

Query: 178 RFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELS 237
             +I                                     NVV  +++V  Y +   + 
Sbjct: 123 NDAI------------------------------------KNVVTWTALVSGYVRWNRIE 146

Query: 238 DARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGL 297
           +ARRLFD    ++V++W TM+ GYA+ G ++ A  LF +MPE+N VSW T+I  + +   
Sbjct: 147 EARRLFDAMPVKNVISWNTMIEGYARKGWIDQALDLFEKMPERNVVSWNTVITAFMQRRR 206

Query: 298 GQKALELFTRMMILRIRPNQHTFS-SCLCACASIVSLKHGKQVHGFLIRTNFR-SNTIVM 355
             +A ELF RM      P +   S + + A  S    K+G+     L+       N +  
Sbjct: 207 VDEAQELFNRM------PERDVISWTTMVAGLS----KNGRIDDARLLFDKMPVRNVVSW 256

Query: 356 SSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSV 415
           +++I  Y++   L++  ++F+    +E S  WNTMI+   Q+G  E+A+  F+ M   +V
Sbjct: 257 NTMIIGYAQNMRLDEAFKLFEQMPERELSS-WNTMITGFIQNGKLERAVDFFYKMSNKNV 315

Query: 416 KPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQ--AGCSDQ 473
               +T   +++     G  +E L  F  M     + PN+     ++   ++  A C  Q
Sbjct: 316 ----VTWTAVISGHVQDGRSEEALKIFSEMQAANNVKPNEGTFVSVLGACSKLAALCEGQ 371

Query: 474 LMNQ-LEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVD 511
            ++Q + K  Y+  + + +AL  +    G +++ RK+ D
Sbjct: 372 QIHQIISKTVYQEVADVVSALINMYSKCGELELARKIFD 410


>gi|32487551|emb|CAE03754.1| OSJNBa0013K16.3 [Oryza sativa Japonica Group]
          Length = 865

 Score =  328 bits (841), Expect = 5e-87,   Method: Compositional matrix adjust.
 Identities = 172/581 (29%), Positives = 317/581 (54%), Gaps = 40/581 (6%)

Query: 26  SLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKT 85
           +L   G++ EA+  +  + ++G+RL + T    L  CA   SL  GK++H          
Sbjct: 244 ALSQSGRVREALGLVVEMHRKGVRLDSTTYTSSLTACARLFSLGWGKQLH---------- 293

Query: 86  PTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNM 145
                                  KV   +P  + +  + ++  YA  G  K A+ +F+++
Sbjct: 294 ----------------------AKVIRSLPQIDPYVASALIELYAKCGSFKEAKRVFNSL 331

Query: 146 AERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTR 205
            +R+ VSW  +I G  +     + ++ +  +R   ++ ++F+ A +++ C    +L L R
Sbjct: 332 QDRNSVSWTVLIGGSLQYECFSKSVELFNQMRAELMAIDQFALATLISGCFNRMDLCLGR 391

Query: 206 QVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLG 265
           Q+H   L +G    +V+S+S++  YAKCG+L +A  +F     RD+++WT+M++ Y+++G
Sbjct: 392 QLHSLCLKSGHNRAIVVSNSLISLYAKCGDLQNAEFVFSSMSERDIVSWTSMITAYSQIG 451

Query: 266 DMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILR-IRPNQHTFSSCL 324
           ++  A + F+ M  +N ++W  ++  Y ++G  +  L++++ M+  + + P+  T+ +  
Sbjct: 452 NIIKAREFFDGMATRNAITWNAMLGAYIQHGAEEDGLKMYSAMLSQKDVTPDWVTYVTLF 511

Query: 325 CACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENS 384
             CA I + K G Q+ G  ++     N  V ++ I MYSKCG +++ +++FDL + K+  
Sbjct: 512 RGCADIGANKLGDQIIGHTVKAGLILNVSVANAAITMYSKCGRISEAQKLFDLLNGKD-V 570

Query: 385 MLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFES 444
           + WN MI+  +QHG  +QA + F DM+    KPD I+   +L+ C+HSGLVQEG  YF+ 
Sbjct: 571 VSWNAMITGYSQHGMGKQAAKTFDDMLSKGAKPDYISYVAVLSGCSHSGLVQEGKLYFDM 630

Query: 445 MTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNID 504
           MT   GI P  EH +C+++LL +AG   +  + ++KMP +  + +W AL   C+IHGN +
Sbjct: 631 MTRVHGISPGLEHFSCMVDLLGRAGHLTEAKDLIDKMPMKPTAEVWGALLSACKIHGNDE 690

Query: 505 MGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIE 564
           +       + + +   S ++ LL+ IYS  GK     +VR+L+ ++  KK    SW+E+E
Sbjct: 691 LAELAAKHVFELDSPDSGSYMLLAKIYSDAGKSDDSAQVRKLMRDKGIKKNPGYSWMEVE 750

Query: 565 NKVHAFSVSDSLHP----MRDVLYSVLEQLA--GQMGEDAP 599
           NKVH F   D  HP    +R+ +  ++E++A  G +  ++P
Sbjct: 751 NKVHVFKADDVSHPQVIAIRNKMDELMEKIAHLGYVRTESP 791



 Score =  202 bits (515), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 138/478 (28%), Positives = 236/478 (49%), Gaps = 28/478 (5%)

Query: 53  ETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFD 112
           + LA  L+ C    +L   + +H  L +T       FL N L+  Y  CG+  DAR++  
Sbjct: 5   QALADALRSCGSRGALAGARALHGRL-VTVGLASAVFLQNTLLHAYLSCGALSDARRLLR 63

Query: 113 K-IPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLK 171
             I   N+ ++N M++GYA  G +  A  LFD M  RDV SWNT++ GY ++    +GL+
Sbjct: 64  ADIKEPNVITHNIMMNGYAKQGSLSDAEELFDRMPRRDVASWNTLMSGYFQARRFLDGLE 123

Query: 172 FYKVLRRFSISC-NEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAY 230
            +  + R   S  N F+F  ++  C  L   +L  Q+ G      F  +  + +++VD +
Sbjct: 124 TFVSMHRSGDSLPNAFTFCCVMKSCGALGCRELAPQLLGLFWKFDFWGDPDVETALVDMF 183

Query: 231 AKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIA 290
            +CG +  A RLF + +   +    +M++GYAKL  ++ A + F +M E++ VSW  +IA
Sbjct: 184 VRCGYVDFASRLFSQIERPTIFCRNSMLAGYAKLYGIDHAIEYFEDMAERDVVSWNMMIA 243

Query: 291 GYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRS 350
             +++G  ++AL L   M    +R +  T++S L ACA + SL  GKQ+H  +IR+  + 
Sbjct: 244 ALSQSGRVREALGLVVEMHRKGVRLDSTTYTSSLTACARLFSLGWGKQLHAKVIRSLPQI 303

Query: 351 NTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDM 410
           +  V S+LI++Y+KCG   + ++VF+   ++ NS+ W  +I    Q+    +++ LF+ M
Sbjct: 304 DPYVASALIELYAKCGSFKEAKRVFNSLQDR-NSVSWTVLIGGSLQYECFSKSVELFNQM 362

Query: 411 VRSSVKPDKITLAVILNAC-----------THSGLVQEGLTYFESMTHDLGIIPNQEHHA 459
               +  D+  LA +++ C            HS  ++ G        H+  I+ +     
Sbjct: 363 RAELMAIDQFALATLISGCFNRMDLCLGRQLHSLCLKSG--------HNRAIVVSNS--- 411

Query: 460 CLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQN 517
            LI L A+ G           M  E D   W ++       GNI   R+  D +  +N
Sbjct: 412 -LISLYAKCGDLQNAEFVFSSMS-ERDIVSWTSMITAYSQIGNIIKAREFFDGMATRN 467


>gi|222622013|gb|EEE56145.1| hypothetical protein OsJ_05030 [Oryza sativa Japonica Group]
          Length = 742

 Score =  328 bits (841), Expect = 5e-87,   Method: Compositional matrix adjust.
 Identities = 177/592 (29%), Positives = 310/592 (52%), Gaps = 35/592 (5%)

Query: 11  NRKNLPNNCLIQSFLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKL 70
            R  +  N LI  F S  S  +  +   +L  L +  +R    TL+ ++   +      L
Sbjct: 107 ERDAVSYNALITGFSSTGSPARSVQLYRAL--LREESVRPTRITLSAMIMVASALSDRAL 164

Query: 71  GKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYA 130
           G  VH  + L        F+ + L+ MY K G   DAR+VF ++  K +  YN +++G  
Sbjct: 165 GHSVHCQV-LRLGFGAYAFVGSPLVDMYAKMGLIRDARRVFQEMEAKTVVMYNTLITGLL 223

Query: 131 NLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAG 190
              M++ A+ LF  M +RD ++W TM+ G  ++G   E L  ++ +R   +  ++++F  
Sbjct: 224 RCKMIEDAKGLFQLMVDRDSITWTTMVTGLTQNGLQLEALDVFRRMRAEGVGIDQYTFGS 283

Query: 191 ILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARD 250
           ILT C  L  L+  +Q+H  +  T +  NV + S++VD Y+KC  +    RL        
Sbjct: 284 ILTACGALAALEEGKQIHAYITRTWYEDNVFVGSALVDMYSKCRSI----RL-------- 331

Query: 251 VLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMI 310
                              A  +F  M  +N +SWT +I GY +N   ++A+  F+ M +
Sbjct: 332 -------------------AEAVFRRMTCRNIISWTAMIVGYGQNACSEEAVRAFSEMQM 372

Query: 311 LRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLND 370
             I+P+  T  S + +CA++ SL+ G Q H   + +       V ++L+ +Y KCG + D
Sbjct: 373 DGIKPDDFTLGSVISSCANLASLEEGAQFHCLALVSGLMRYITVSNALVTLYGKCGSIED 432

Query: 371 GRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACT 430
             ++FD   +  + + W  +++   Q G  ++ I LF  M+ + +KPD +T   +L+AC+
Sbjct: 433 AHRLFDEM-SFHDQVSWTALVTGYAQFGKAKETIDLFEKMLANGLKPDGVTFIGVLSACS 491

Query: 431 HSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLW 490
            +GLV++G  YF+SM  D GI+P  +H+ C+I+L +++G   +    +++MP+  D++ W
Sbjct: 492 RAGLVEKGCDYFDSMQKDHGIVPIDDHYTCMIDLYSRSGRFKEAEEFIKQMPHSPDAFGW 551

Query: 491 NALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINER 550
             L   CR+ GN+++G+   + L++ +PQ+ A++ LL S+++A G+   V  +R+ + +R
Sbjct: 552 ATLLSSCRLRGNMEIGKWAAENLLETDPQNPASYVLLCSMHAAKGQWTEVAHLRRGMRDR 611

Query: 551 QFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQMGEDAPSLD 602
           Q KKE   SWI+ +NKVH FS  D  HP    +Y  LE L  +M E+    D
Sbjct: 612 QVKKEPGCSWIKYKNKVHIFSADDQSHPFSSRIYEKLEWLNSKMAEEGYKPD 663



 Score =  263 bits (673), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 141/427 (33%), Positives = 236/427 (55%), Gaps = 4/427 (0%)

Query: 68  LKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLS 127
           +++   VH  +  T  + P TFL NHL++ Y K G    AR+VFD++P  NLF+ N +LS
Sbjct: 28  VRVAGAVHCLILKTFLQAPPTFLLNHLLTAYAKSGRLARARRVFDEMPDPNLFTRNALLS 87

Query: 128 GYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYK-VLRRFSISCNEF 186
             A+  ++     LF +M ERD VS+N +I G++ +G+    ++ Y+ +LR  S+     
Sbjct: 88  ALAHSRLVPDMERLFASMPERDAVSYNALITGFSSTGSPARSVQLYRALLREESVRPTRI 147

Query: 187 SFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDET 246
           + + ++ +   L +  L   VH QVL  GF +   + S +VD YAK G + DARR+F E 
Sbjct: 148 TLSAMIMVASALSDRALGHSVHCQVLRLGFGAYAFVGSPLVDMYAKMGLIRDARRVFQEM 207

Query: 247 DARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFT 306
           +A+ V+ + T+++G  +   +E A  LF  M +++ ++WTT++ G T+NGL  +AL++F 
Sbjct: 208 EAKTVVMYNTLITGLLRCKMIEDAKGLFQLMVDRDSITWTTMVTGLTQNGLQLEALDVFR 267

Query: 307 RMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCG 366
           RM    +  +Q+TF S L AC ++ +L+ GKQ+H ++ RT +  N  V S+L+DMYSKC 
Sbjct: 268 RMRAEGVGIDQYTFGSILTACGALAALEEGKQIHAYITRTWYEDNVFVGSALVDMYSKCR 327

Query: 367 CLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVIL 426
            +     VF     + N + W  MI    Q+   E+A+R F +M    +KPD  TL  ++
Sbjct: 328 SIRLAEAVFRRMTCR-NIISWTAMIVGYGQNACSEEAVRAFSEMQMDGIKPDDFTLGSVI 386

Query: 427 NACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHD 486
           ++C +   ++EG   F  +    G++        L+ L  + G  +      ++M + HD
Sbjct: 387 SSCANLASLEEG-AQFHCLALVSGLMRYITVSNALVTLYGKCGSIEDAHRLFDEMSF-HD 444

Query: 487 SYLWNAL 493
              W AL
Sbjct: 445 QVSWTAL 451


>gi|347954534|gb|AEP33767.1| organelle transcript processing 82, partial [Matthiola incana]
          Length = 694

 Score =  328 bits (841), Expect = 6e-87,   Method: Compositional matrix adjust.
 Identities = 190/562 (33%), Positives = 306/562 (54%), Gaps = 46/562 (8%)

Query: 34  SEAISSLDL---LAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFL 90
           S+ +S+L L   +   G+   + T  F+L+ CA+SK  K G+++H H+ L        ++
Sbjct: 68  SDPVSALKLYLVMISLGLLPDSYTFPFLLKSCAKSKIRKEGQQIHGHV-LKLGFDLDIYV 126

Query: 91  SNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDV 150
              LISMY + G   DARKVFD    +++ SY  +++GY + G ++ A+ LFD +  +DV
Sbjct: 127 HTSLISMYAQNGRLEDARKVFDISSHRDVVSYTALIAGYVSRGYIESAQKLFDEIPGKDV 186

Query: 151 VSWNTMIIGYAKSGAVEEGLKFYKVLRRFS-ISCNEFSFAGILTICVKLEELKLTRQVHG 209
           VSWN MI GY ++G  +E L+ +K +   + +  +E +   +++ C + + ++L R VH 
Sbjct: 187 VSWNAMISGYVETGNYKEALELFKEMMMMTNVRPDESTMVTVVSACAQSDSIELGRHVHS 246

Query: 210 QVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMES 269
            +   GF SN+ I ++++D Y+K GE+                               E+
Sbjct: 247 WINDHGFASNLKIVNALIDLYSKFGEV-------------------------------ET 275

Query: 270 ASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACAS 329
           A +LF+ +  K+ +SW TLI GYT   L ++AL LF  M+     PN  T  S L ACA 
Sbjct: 276 ACELFDGLWNKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAH 335

Query: 330 IVSLKHGKQVHGFL------IRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKEN 383
           + ++  G+ +H ++      + TN  S   + +SLIDMY+KCG ++  +QVFD + +  +
Sbjct: 336 LGAIDIGRWIHVYINKKLKGVVTNVSS---LQTSLIDMYAKCGDIDAAQQVFDSSMSNRS 392

Query: 384 SMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFE 443
              WN MIS    HG    A  +F  M  + ++PD IT   +L+AC+HSG++  G   F 
Sbjct: 393 LSTWNAMISGFAMHGRANAAFDIFSRMRMNGIEPDDITFVGLLSACSHSGMLDLGRNIFR 452

Query: 444 SMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNI 503
           SMT    I P  EH+ C+I+LL  +G   +    +  MP E D  +W +L   C+IHGN+
Sbjct: 453 SMTRGYEITPKLEHYGCMIDLLGHSGLFKEAEEMINTMPMEPDGVIWCSLLKACKIHGNL 512

Query: 504 DMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKE-QAISWIE 562
           ++G     +LI   P +S ++ LLS+IY+A G+   V K+R L+N++  KK+    S IE
Sbjct: 513 ELGESFAKKLIKIEPGNSGSYVLLSNIYAAAGRWNEVAKIRALLNDKGMKKKVPGCSSIE 572

Query: 563 IENKVHAFSVSDSLHPMRDVLY 584
           I++ VH F + D LHP    +Y
Sbjct: 573 IDSVVHEFIIGDKLHPQNREIY 594



 Score =  220 bits (561), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 124/368 (33%), Positives = 206/368 (55%), Gaps = 4/368 (1%)

Query: 137 HARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICV 196
           +A ++FD + E +++ WNTM  G+A S      LK Y V+    +  + ++F  +L  C 
Sbjct: 41  YAISVFDTIQEPNLLIWNTMFRGHALSSDPVSALKLYLVMISLGLLPDSYTFPFLLKSCA 100

Query: 197 KLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTT 256
           K +  K  +Q+HG VL  GF  ++ + +S++  YA+ G L DAR++FD +  RDV+++T 
Sbjct: 101 KSKIRKEGQQIHGHVLKLGFDLDIYVHTSLISMYAQNGRLEDARKVFDISSHRDVVSYTA 160

Query: 257 MVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMIL-RIRP 315
           +++GY   G +ESA KLF+E+P K+ VSW  +I+GY   G  ++ALELF  MM++  +RP
Sbjct: 161 LIAGYVSRGYIESAQKLFDEIPGKDVVSWNAMISGYVETGNYKEALELFKEMMMMTNVRP 220

Query: 316 NQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVF 375
           ++ T  + + ACA   S++ G+ VH ++    F SN  ++++LID+YSK G +    ++F
Sbjct: 221 DESTMVTVVSACAQSDSIELGRHVHSWINDHGFASNLKIVNALIDLYSKFGEVETACELF 280

Query: 376 DLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLV 435
           D   NK+  + WNT+I   T     ++A+ LF +M+RS   P+ +T+  IL AC H G +
Sbjct: 281 DGLWNKD-VISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAI 339

Query: 436 QEGLTYFESMTHDL-GIIPNQEH-HACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNAL 493
             G      +   L G++ N       LI++ A+ G  D      +          WNA+
Sbjct: 340 DIGRWIHVYINKKLKGVVTNVSSLQTSLIDMYAKCGDIDAAQQVFDSSMSNRSLSTWNAM 399

Query: 494 HGVCRIHG 501
                +HG
Sbjct: 400 ISGFAMHG 407


>gi|242094598|ref|XP_002437789.1| hypothetical protein SORBIDRAFT_10g002620 [Sorghum bicolor]
 gi|241916012|gb|EER89156.1| hypothetical protein SORBIDRAFT_10g002620 [Sorghum bicolor]
          Length = 623

 Score =  328 bits (840), Expect = 6e-87,   Method: Compositional matrix adjust.
 Identities = 183/532 (34%), Positives = 297/532 (55%), Gaps = 46/532 (8%)

Query: 94  LISMYFKCGSDVDARKVFDKIPVK-NLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVS 152
           L+S Y + G   DAR++FD+   + N+ ++  +LSGYA   ++  A  LF  M +R+VVS
Sbjct: 79  LVSAYARRGMLRDARELFDRPDARRNVVTWTALLSGYARARLVDEAEALFQRMPQRNVVS 138

Query: 153 WNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVL 212
           WNTM+  YA +G V +    +    R  +  +  S+  +L   V+   +   R++ G++ 
Sbjct: 139 WNTMLEAYAAAGRVGDACALFD---RMPVR-DAGSWNILLATLVRSGSVDKARELFGRMP 194

Query: 213 VTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKL-------- 264
                 +V+  +++VD  A+ G++ +AR LFD    R+V++W  M+SGY +         
Sbjct: 195 E----RDVMAWTTMVDGVARSGKVDEARVLFDSMPERNVVSWNAMISGYTRNHRIDEALD 250

Query: 265 -----------------------GDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKA 301
                                   D++ A +LF+EMPE+N V+WTT++ GY +    + A
Sbjct: 251 LFMKMPERDIASCNIMVTGFIQNKDLKRARELFDEMPERNVVTWTTMMNGYLKGKQSELA 310

Query: 302 LELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDM 361
           L LF+ M++   RPNQ TF   L AC+ + +L  GKQVH  + +T F+ +  V S+L+++
Sbjct: 311 LGLFSGMLMAGTRPNQVTFLGALDACSDLAALCEGKQVHQMICKTTFQFDAFVESALMNV 370

Query: 362 YSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKIT 421
           Y+KCG +   R++FDL+  K+  + WN +I+A   HG   +AI L+  M  +  +P+ +T
Sbjct: 371 YAKCGEIGLARKLFDLSREKD-LISWNGIIAAYAHHGVGIEAILLYEKMQENGYRPNDVT 429

Query: 422 LAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSD---QLMNQL 478
             V+L+AC+HSGLV EGL  FESM +D  I    EH+ CLI+L ++AG  D   +L++ L
Sbjct: 430 YVVLLSACSHSGLVDEGLKIFESMVNDRSIAVRDEHYTCLIDLCSRAGRLDDAKRLIHYL 489

Query: 479 EKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGR 538
           +  P      +W+AL G C  HGN  +G      L+   P ++ T+ LLS+IY++ GK +
Sbjct: 490 KIKPAS--GSVWSALLGGCNAHGNESIGNLAARNLLQAEPDNAGTYTLLSNIYASAGKWK 547

Query: 539 LVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQL 590
              ++R  +N R  KK+   SWIE+ NKVH F   D  H   D++Y +L+ +
Sbjct: 548 EAAEIRSEMNNRGLKKQPGCSWIEVANKVHVFVARDKSHSESDLIYGLLQNI 599



 Score =  129 bits (323), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 88/311 (28%), Positives = 148/311 (47%), Gaps = 37/311 (11%)

Query: 92  NHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVV 151
           N +IS Y +     +A  +F K+P +++ S N M++G+     +K AR LFD M ER+VV
Sbjct: 233 NAMISGYTRNHRIDEALDLFMKMPERDIASCNIMVTGFIQNKDLKRARELFDEMPERNVV 292

Query: 152 SWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQV 211
           +W TM+ GY K    E  L  +  +       N+ +F G L  C  L  L   +QVH  +
Sbjct: 293 TWTTMMNGYLKGKQSELALGLFSGMLMAGTRPNQVTFLGALDACSDLAALCEGKQVHQMI 352

Query: 212 LVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESAS 271
             T F  +  + S++++ YAKCGE+  AR+LFD +  +D+++W  +++ YA         
Sbjct: 353 CKTTFQFDAFVESALMNVYAKCGEIGLARKLFDLSREKDLISWNGIIAAYA--------- 403

Query: 272 KLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIV 331
                                  +G+G +A+ L+ +M     RPN  T+   L AC+   
Sbjct: 404 ----------------------HHGVGIEAILLYEKMQENGYRPNDVTYVVLLSACSHSG 441

Query: 332 SLKHGKQVHGFLIRTNFRSNTIV---MSSLIDMYSKCGCLNDGRQVFDLTDNKENS-MLW 387
            +  G ++  F    N RS  +     + LID+ S+ G L+D +++      K  S  +W
Sbjct: 442 LVDEGLKI--FESMVNDRSIAVRDEHYTCLIDLCSRAGRLDDAKRLIHYLKIKPASGSVW 499

Query: 388 NTMISALTQHG 398
           + ++     HG
Sbjct: 500 SALLGGCNAHG 510



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 87/329 (26%), Positives = 150/329 (45%), Gaps = 51/329 (15%)

Query: 219 NVVISSSIVDAYAKCGELSDARRLFDETDAR-DVLTWTTMVSGYAKLGDMESASKLFNEM 277
           +VV  +++V AYA+ G L DAR LFD  DAR +V+TWT ++SGYA+   ++ A  LF  M
Sbjct: 72  DVVSWTALVSAYARRGMLRDARELFDRPDARRNVVTWTALLSGYARARLVDEAEALFQRM 131

Query: 278 PEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGK 337
           P++N VSW T++  Y   G    A  LF RM +     +  +++  L       S+   +
Sbjct: 132 PQRNVVSWNTMLEAYAAAGRVGDACALFDRMPV----RDAGSWNILLATLVRSGSVDKAR 187

Query: 338 QVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQH 397
           ++ G +       + +  ++++D  ++ G +++ R +FD    + N + WN MIS  T++
Sbjct: 188 ELFGRMP----ERDVMAWTTMVDGVARSGKVDEARVLFDSMPER-NVVSWNAMISGYTRN 242

Query: 398 GYDEQAIRLFHDMVRSSVK-------------------------PDK--ITLAVILNACT 430
              ++A+ LF  M    +                          P++  +T   ++N   
Sbjct: 243 HRIDEALDLFMKMPERDIASCNIMVTGFIQNKDLKRARELFDEMPERNVVTWTTMMNGYL 302

Query: 431 HSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSD--------QLMNQLEKMP 482
                +  L  F  M    G  PNQ     +  L A   CSD        Q+   + K  
Sbjct: 303 KGKQSELALGLFSGMLM-AGTRPNQ-----VTFLGALDACSDLAALCEGKQVHQMICKTT 356

Query: 483 YEHDSYLWNALHGVCRIHGNIDMGRKVVD 511
           ++ D+++ +AL  V    G I + RK+ D
Sbjct: 357 FQFDAFVESALMNVYAKCGEIGLARKLFD 385



 Score = 65.1 bits (157), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 67/257 (26%), Positives = 126/257 (49%), Gaps = 12/257 (4%)

Query: 30  KGQLSE-AISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTT 88
           KG+ SE A+     +   G R    T    L  C++  +L  GK+VH  +  T  +    
Sbjct: 303 KGKQSELALGLFSGMLMAGTRPNQVTFLGALDACSDLAALCEGKQVHQMICKTTFQF-DA 361

Query: 89  FLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAER 148
           F+ + L+++Y KCG    ARK+FD    K+L S+N +++ YA+ G+   A  L++ M E 
Sbjct: 362 FVESALMNVYAKCGEIGLARKLFDLSREKDLISWNGIIAAYAHHGVGIEAILLYEKMQEN 421

Query: 149 ----DVVSWNTMIIGYAKSGAVEEGLK-FYKVLRRFSISCNEFSFAGILTICVKLEEL-K 202
               + V++  ++   + SG V+EGLK F  ++   SI+  +  +  ++ +C +   L  
Sbjct: 422 GYRPNDVTYVVLLSACSHSGLVDEGLKIFESMVNDRSIAVRDEHYTCLIDLCSRAGRLDD 481

Query: 203 LTRQVHGQVL--VTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSG 260
             R +H   +   +G + + ++           G L+ AR L  + +  +  T+T + + 
Sbjct: 482 AKRLIHYLKIKPASGSVWSALLGGCNAHGNESIGNLA-ARNLL-QAEPDNAGTYTLLSNI 539

Query: 261 YAKLGDMESASKLFNEM 277
           YA  G  + A+++ +EM
Sbjct: 540 YASAGKWKEAAEIRSEM 556


>gi|449518887|ref|XP_004166467.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At2g35030, mitochondrial-like [Cucumis sativus]
          Length = 649

 Score =  328 bits (840), Expect = 6e-87,   Method: Compositional matrix adjust.
 Identities = 170/513 (33%), Positives = 300/513 (58%), Gaps = 10/513 (1%)

Query: 94  LISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSW 153
           L+S Y +     +AR++FD +PVKN+ S+N M+ GYA  G +  A +LF+ M ER+VVSW
Sbjct: 135 LVSGYVRWNRIEEARRLFDAMPVKNVISWNTMIEGYARKGWIDQALDLFEXMPERNVVSW 194

Query: 154 NTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLV 213
           NT+I  + +   V+E  + +  +    +     S+  ++    K   +   R +  ++ V
Sbjct: 195 NTVITAFMQRRRVDEAQELFNRMPERDV----ISWTTMVAGLSKNGRIDDARLLFDKMPV 250

Query: 214 TGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKL 273
                NVV  ++++  YA+   L +A +LF++   R++ +W TM++G+ + G +E A   
Sbjct: 251 ----RNVVSWNTMIIGYAQNMRLDEAFKLFEQMPERELSSWNTMITGFIQNGKLERAVDF 306

Query: 274 FNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILR-IRPNQHTFSSCLCACASIVS 332
           F +M  KN V+WT +I+G+ ++G  ++AL++F+ M     ++PN+ TF S L AC+ + +
Sbjct: 307 FYKMSNKNVVTWTAVISGHVQDGRSEEALKIFSEMQAANNVKPNEGTFVSVLGACSKLAA 366

Query: 333 LKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFD-LTDNKENSMLWNTMI 391
           L  G+Q+H  + +T ++    V+S+LI+MYSKCG L   R++FD  +    + + WN MI
Sbjct: 367 LCEGQQIHQIISKTVYQEVADVVSALINMYSKCGELELARKIFDDGSIGHRDVVSWNGMI 426

Query: 392 SALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGI 451
           +A   HG+  +AI LF +M     +PD +T   +L+AC+H+GLV EGL  FE++  D  I
Sbjct: 427 AAYAHHGHGHKAISLFDEMQALGFRPDNVTYIALLSACSHAGLVDEGLKLFENLVRDRSI 486

Query: 452 IPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVD 511
              ++H  CL++L  +AG   +  + ++ +  +  + +W AL   C +HG+ID+G+   +
Sbjct: 487 KLREDHFTCLVDLFGRAGRLQEAFDFIKGLEVKPSASVWAALLAGCNVHGHIDLGKLTAE 546

Query: 512 QLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFS 571
           +L++  P+++ T+ +LS+IY++ GK R    VR  + ++  KK+   SWIE+ N VH F 
Sbjct: 547 KLLETEPENAGTYLVLSNIYASTGKWREAAGVRMKMKDKGLKKQPGCSWIEVGNTVHVFV 606

Query: 572 VSDSLHPMRDVLYSVLEQLAGQMGEDAPSLDAD 604
           V D+ H   + +Y +L  L  +M +   +L  D
Sbjct: 607 VGDNSHREFENIYLLLHDLHTKMKKIGHTLYED 639



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 105/399 (26%), Positives = 183/399 (45%), Gaps = 58/399 (14%)

Query: 118 NLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLR 177
           N+   N +++     G +  AR +F+ M +RDVVSW  +I GY K G +EE    +   R
Sbjct: 65  NVARSNWLITQLGKEGKIGEARQVFEEMPDRDVVSWTAVITGYIKCGMIEEAKTLFD--R 122

Query: 178 RFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELS 237
             +I                                     NVV  +++V  Y +   + 
Sbjct: 123 NDAI------------------------------------KNVVTWTALVSGYVRWNRIE 146

Query: 238 DARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGL 297
           +ARRLFD    ++V++W TM+ GYA+ G ++ A  LF  MPE+N VSW T+I  + +   
Sbjct: 147 EARRLFDAMPVKNVISWNTMIEGYARKGWIDQALDLFEXMPERNVVSWNTVITAFMQRRR 206

Query: 298 GQKALELFTRMMILRIRPNQHTFS-SCLCACASIVSLKHGKQVHGFLIRTNFR-SNTIVM 355
             +A ELF RM      P +   S + + A  S    K+G+     L+       N +  
Sbjct: 207 VDEAQELFNRM------PERDVISWTTMVAGLS----KNGRIDDARLLFDKMPVRNVVSW 256

Query: 356 SSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSV 415
           +++I  Y++   L++  ++F+    +E S  WNTMI+   Q+G  E+A+  F+ M   +V
Sbjct: 257 NTMIIGYAQNMRLDEAFKLFEQMPERELSS-WNTMITGFIQNGKLERAVDFFYKMSNKNV 315

Query: 416 KPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQ--AGCSDQ 473
               +T   +++     G  +E L  F  M     + PN+     ++   ++  A C  Q
Sbjct: 316 ----VTWTAVISGHVQDGRSEEALKIFSEMQAANNVKPNEGTFVSVLGACSKLAALCEGQ 371

Query: 474 LMNQ-LEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVD 511
            ++Q + K  Y+  + + +AL  +    G +++ RK+ D
Sbjct: 372 QIHQIISKTVYQEVADVVSALINMYSKCGELELARKIFD 410


>gi|347954530|gb|AEP33765.1| organelle transcript processing 82, partial [Lepidium sativum]
          Length = 672

 Score =  328 bits (840), Expect = 6e-87,   Method: Compositional matrix adjust.
 Identities = 182/556 (32%), Positives = 302/556 (54%), Gaps = 38/556 (6%)

Query: 34  SEAISSLDL---LAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFL 90
           S+++++L L   +   G+   + +  F+L+ CA+SK+L  G+++H H+ L        ++
Sbjct: 44  SDSVTALKLYVCMISLGLLPNSYSFPFLLKSCAKSKALIEGQQIHGHV-LKLGYDLDMYV 102

Query: 91  SNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDV 150
           +  LISMY + G   DA KVFD+   +++ SY  +++GYA+ G + +AR LFD ++ +DV
Sbjct: 103 NTSLISMYAQNGRLEDAHKVFDRSSHRHVVSYTALITGYASRGYINNARKLFDEISVKDV 162

Query: 151 VSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQ 210
           VSWN MI GY ++   +E L+ YK + + ++  +E +   +++ C +   ++L RQ+H  
Sbjct: 163 VSWNAMISGYVETCNFKEALELYKDMMKTNVKPDESTMVTVVSACAQSGSIELGRQLHSW 222

Query: 211 VLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESA 270
           +   GF SN+ I + ++D Y+KCGE+                               E+A
Sbjct: 223 IEDHGFGSNIKIVNVLIDLYSKCGEV-------------------------------ETA 251

Query: 271 SKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASI 330
             LF  + +K+ +SW TLI G+T   L ++AL LF  M+     PN  T  S L ACA +
Sbjct: 252 CGLFQGLAKKDVISWNTLIGGHTHMNLYKEALLLFQEMLRSGESPNDVTMLSVLPACAHL 311

Query: 331 VSLKHGKQVHGFLIR--TNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWN 388
            ++  G+ +H ++ +      + + +++SLIDMY+KCG +   +QVFD    +  S  WN
Sbjct: 312 GAIDIGRWIHVYINKRLKGVTNASSLLTSLIDMYAKCGDIEAAKQVFDSMLTRSLSS-WN 370

Query: 389 TMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHD 448
            MI     HG    A  LF  M ++ + PD IT   +L+AC+HSG++  G   F SM+ D
Sbjct: 371 AMIFGFAMHGKANAAFDLFSKMRKNGIDPDDITFVGLLSACSHSGMLDLGRHIFRSMSQD 430

Query: 449 LGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRK 508
             I P  EH+ C+I+LL   G   +    +  MP E D  +W +L   C++H N+++G  
Sbjct: 431 YKITPKLEHYGCMIDLLGHCGLFKEAKEMIRTMPMEPDGVIWCSLLKACKMHNNVELGES 490

Query: 509 VVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVH 568
               LI   P++  ++ LLS+IY+  G+   V K+R L+N++  KK    S IEI++ VH
Sbjct: 491 YAQNLIKIEPENPGSYVLLSNIYATAGRWDQVAKIRTLLNDKGIKKAPGCSSIEIDSVVH 550

Query: 569 AFSVSDSLHPMRDVLY 584
            F + D  HP    +Y
Sbjct: 551 EFIIGDKFHPRNREIY 566



 Score =  196 bits (498), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 124/406 (30%), Positives = 213/406 (52%), Gaps = 21/406 (5%)

Query: 135 MKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTI 194
           + +A ++F+ + E +++ WNTM  G+A +      LK Y  +    +  N +SF  +L  
Sbjct: 15  LSYAISIFETIQEPNLLIWNTMFRGHALNSDSVTALKLYVCMISLGLLPNSYSFPFLLKS 74

Query: 195 CVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTW 254
           C K + L   +Q+HG VL  G+  ++ +++S++  YA+ G L DA ++FD +  R V+++
Sbjct: 75  CAKSKALIEGQQIHGHVLKLGYDLDMYVNTSLISMYAQNGRLEDAHKVFDRSSHRHVVSY 134

Query: 255 TTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIR 314
           T +++GYA  G + +A KLF+E+  K+ VSW  +I+GY      ++ALEL+  MM   ++
Sbjct: 135 TALITGYASRGYINNARKLFDEISVKDVVSWNAMISGYVETCNFKEALELYKDMMKTNVK 194

Query: 315 PNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQV 374
           P++ T  + + ACA   S++ G+Q+H ++    F SN  +++ LID+YSKCG +     +
Sbjct: 195 PDESTMVTVVSACAQSGSIELGRQLHSWIEDHGFGSNIKIVNVLIDLYSKCGEVETACGL 254

Query: 375 FDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGL 434
           F     K++ + WNT+I   T     ++A+ LF +M+RS   P+ +T+  +L AC H G 
Sbjct: 255 FQGL-AKKDVISWNTLIGGHTHMNLYKEALLLFQEMLRSGESPNDVTMLSVLPACAHLGA 313

Query: 435 VQEGLTYFESMTHDL-GIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYL---- 489
           +  G      +   L G+         LI++ A+ G        +E      DS L    
Sbjct: 314 IDIGRWIHVYINKRLKGVTNASSLLTSLIDMYAKCG-------DIEAAKQVFDSMLTRSL 366

Query: 490 --WNALHGVCRIHGN----IDMGRKVVDQLIDQNPQSSATHGLLSS 529
             WNA+     +HG      D+  K+    ID  P      GLLS+
Sbjct: 367 SSWNAMIFGFAMHGKANAAFDLFSKMRKNGID--PDDITFVGLLSA 410


>gi|449443642|ref|XP_004139586.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g13600-like [Cucumis sativus]
 gi|449492832|ref|XP_004159115.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g13600-like [Cucumis sativus]
          Length = 663

 Score =  328 bits (840), Expect = 6e-87,   Method: Compositional matrix adjust.
 Identities = 168/559 (30%), Positives = 300/559 (53%), Gaps = 37/559 (6%)

Query: 46  RGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTP--TTFLSNHLISMYFKCGS 103
           +G +  + T A +L  CA     + GK  HLH ++  R  P     + N L+ MY KC  
Sbjct: 119 QGCQPNSMTYASVLSACANIYDFQWGK--HLHARIV-RVEPFLDVLVGNGLVDMYAKC-- 173

Query: 104 DVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKS 163
                                        G++  ++ +F+ + E +VV+W ++I G A  
Sbjct: 174 -----------------------------GLIDASKRVFNTLREHNVVTWTSLISGIAHF 204

Query: 164 GAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVIS 223
           G+ EE    +  +R+  +  + F  A IL +C     + +  Q+HG  + TG  S+V + 
Sbjct: 205 GSQEEVYDIFYQMRKDCVIMDNFILATILGVCEGETNISIGEQLHGFTVKTGMNSSVPVG 264

Query: 224 SSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPV 283
           ++ +  YAKCG+   A   F+   A DV++WTTM++ ++  G++E A   FN MPE+N +
Sbjct: 265 NATLSMYAKCGDFEKASLAFETMAAHDVISWTTMITSFSHSGNVERARDYFNRMPERNVI 324

Query: 284 SWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFL 343
           SW  ++  Y +N   ++ L+L+  M+   +RP+  TF + + AC+ +   K G Q+    
Sbjct: 325 SWNAMLGAYCQNSFWEEGLKLYILMLRQEVRPDWITFVTMIGACSELAISKLGTQILSQA 384

Query: 344 IRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQA 403
           ++    S+  V++S I +YS+CG + + + +FD    K N + WN+++    Q+G   + 
Sbjct: 385 VKVGLGSDVSVVNSAITLYSRCGRIEEAQNLFDSIQEK-NLISWNSIMGGYAQNGEGMKV 443

Query: 404 IRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIE 463
           I +F +M+ +  KPD IT   IL+ C+HSGLV+E   +F SMT D GI    EH  C+++
Sbjct: 444 IEIFQNMLMAGCKPDHITYIAILSGCSHSGLVKEAKYHFNSMTKDFGISVTLEHFVCMVD 503

Query: 464 LLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSAT 523
           L  +AG     ++ +++MP++ ++ +W AL   CRIH + +M    +  L++ N ++  +
Sbjct: 504 LFGRAGLLKLALDMIDQMPFKPNASIWGALLSACRIHHDTEMAELAMKNLLELNTENFES 563

Query: 524 HGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVL 583
           + LL++ YS+ G+   V +VRQ++ E++ +K+   SWIE+ N+VH F+ +D+ HP    +
Sbjct: 564 YILLANTYSSFGRLECVSEVRQVMKEKRVQKDPGCSWIEVCNRVHVFTANDTSHPQVKDI 623

Query: 584 YSVLEQLAGQMGEDAPSLD 602
           Y  LE +  ++ +D    D
Sbjct: 624 YKALEDIVKKIKDDYGYFD 642



 Score =  165 bits (417), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 93/323 (28%), Positives = 163/323 (50%), Gaps = 3/323 (0%)

Query: 195 CVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTW 254
           C  +  +++  Q+HG     GF +N VI +SI+D Y KC  +  A ++F   +   + +W
Sbjct: 3   CSSVGYIRIAHQLHGLSEKYGFGNNKVIQNSIIDMYIKCDAIYAAEQVFLRIEKPSLFSW 62

Query: 255 TTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIR 314
             M+ GY+KL +M  A   F +MPE++ VSW T+I+ ++ +GL  ++L  F  M I   +
Sbjct: 63  NCMIYGYSKLHEMGRAIDTFRQMPERDSVSWNTIISAFSHHGLHIQSLGTFVEMWIQGCQ 122

Query: 315 PNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQV 374
           PN  T++S L ACA+I   + GK +H  ++R     + +V + L+DMY+KCG ++  ++V
Sbjct: 123 PNSMTYASVLSACANIYDFQWGKHLHARIVRVEPFLDVLVGNGLVDMYAKCGLIDASKRV 182

Query: 375 FDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGL 434
           F+ T  + N + W ++IS +   G  E+   +F+ M +  V  D   LA IL  C     
Sbjct: 183 FN-TLREHNVVTWTSLISGIAHFGSQEEVYDIFYQMRKDCVIMDNFILATILGVCEGETN 241

Query: 435 VQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALH 494
           +  G       T   G+  +       + + A+ G  ++     E M   HD   W  + 
Sbjct: 242 ISIG-EQLHGFTVKTGMNSSVPVGNATLSMYAKCGDFEKASLAFETMA-AHDVISWTTMI 299

Query: 495 GVCRIHGNIDMGRKVVDQLIDQN 517
                 GN++  R   +++ ++N
Sbjct: 300 TSFSHSGNVERARDYFNRMPERN 322



 Score =  160 bits (406), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 113/452 (25%), Positives = 204/452 (45%), Gaps = 66/452 (14%)

Query: 90  LSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERD 149
           + N +I MY KC +   A +VF +I   +LFS+N M+ GY+ L  M  A + F  M ERD
Sbjct: 30  IQNSIIDMYIKCDAIYAAEQVFLRIEKPSLFSWNCMIYGYSKLHEMGRAIDTFRQMPERD 89

Query: 150 VVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHG 209
            VSWNT+I  ++  G   + L  +  +       N  ++A +L+ C  + + +  + +H 
Sbjct: 90  SVSWNTIISAFSHHGLHIQSLGTFVEMWIQGCQPNSMTYASVLSACANIYDFQWGKHLHA 149

Query: 210 QVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMES 269
           +++      +V++ + +VD YAKCG +  ++R+F+     +V+TWT+++SG A  G  E 
Sbjct: 150 RIVRVEPFLDVLVGNGLVDMYAKCGLIDASKRVFNTLREHNVVTWTSLISGIAHFGSQEE 209

Query: 270 ASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACAS 329
              +F +M  K+ V     I                               ++ L  C  
Sbjct: 210 VYDIFYQM-RKDCVIMDNFI------------------------------LATILGVCEG 238

Query: 330 IVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDL------------ 377
             ++  G+Q+HGF ++T   S+  V ++ + MY+KCG        F+             
Sbjct: 239 ETNISIGEQLHGFTVKTGMNSSVPVGNATLSMYAKCGDFEKASLAFETMAAHDVISWTTM 298

Query: 378 ------TDNKE------------NSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDK 419
                 + N E            N + WN M+ A  Q+ + E+ ++L+  M+R  V+PD 
Sbjct: 299 ITSFSHSGNVERARDYFNRMPERNVISWNAMLGAYCQNSFWEEGLKLYILMLRQEVRPDW 358

Query: 420 ITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLE 479
           IT   ++ AC+   + + G T   S    +G+  +       I L ++ G  ++  N  +
Sbjct: 359 ITFVTMIGACSELAISKLG-TQILSQAVKVGLGSDVSVVNSAITLYSRCGRIEEAQNLFD 417

Query: 480 KMPYEHDSYLWNALHGVCRIHGNIDMGRKVVD 511
            +  E +   WN++ G    +G    G KV++
Sbjct: 418 SIQ-EKNLISWNSIMGGYAQNGE---GMKVIE 445



 Score = 62.8 bits (151), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 74/323 (22%), Positives = 127/323 (39%), Gaps = 78/323 (24%)

Query: 326 ACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDN----- 380
           AC+S+  ++   Q+HG   +  F +N ++ +S+IDMY KC  +    QVF   +      
Sbjct: 2   ACSSVGYIRIAHQLHGLSEKYGFGNNKVIQNSIIDMYIKCDAIYAAEQVFLRIEKPSLFS 61

Query: 381 -------------------------KENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSV 415
                                    + +S+ WNT+ISA + HG   Q++  F +M     
Sbjct: 62  WNCMIYGYSKLHEMGRAIDTFRQMPERDSVSWNTIISAFSHHGLHIQSLGTFVEMWIQGC 121

Query: 416 KPDKITLAVILNACTH---------------------SGLVQEGLTYFESMTHDLGIIPN 454
           +P+ +T A +L+AC +                       LV  GL     M    G+I  
Sbjct: 122 QPNSMTYASVLSACANIYDFQWGKHLHARIVRVEPFLDVLVGNGLV---DMYAKCGLIDA 178

Query: 455 --------QEHHAC----LIELLAQAGCSDQLMN---QLEKMPYEHDSYLWNALHGVCRI 499
                   +EH+      LI  +A  G  +++ +   Q+ K     D+++   + GVC  
Sbjct: 179 SKRVFNTLREHNVVTWTSLISGIAHFGSQEEVYDIFYQMRKDCVIMDNFILATILGVCEG 238

Query: 500 HGNIDMGRKVVDQLIDQNPQSSATHGLLS-SIYSALGKGRLVEKVRQLINERQFKKEQAI 558
             NI +G ++    +     SS   G  + S+Y+  G     EK    +          I
Sbjct: 239 ETNISIGEQLHGFTVKTGMNSSVPVGNATLSMYAKCGD---FEKAS--LAFETMAAHDVI 293

Query: 559 SWIEIENKVHAFSVSDSLHPMRD 581
           SW  +   + +FS S ++   RD
Sbjct: 294 SWTTM---ITSFSHSGNVERARD 313


>gi|49333391|gb|AAT64030.1| putative pentatricopeptide repeat protein [Gossypium hirsutum]
          Length = 805

 Score =  328 bits (840), Expect = 6e-87,   Method: Compositional matrix adjust.
 Identities = 197/661 (29%), Positives = 342/661 (51%), Gaps = 77/661 (11%)

Query: 8   RGINRKNLPNNCLIQSFLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKS 67
           R I+ +    N  I  F  L   G L  A+  L  + Q+   L  +T   +LQ CA  KS
Sbjct: 60  RTIDHQVTDYNAKILHFCQL---GDLENAME-LVCMCQKS-ELETKTYGSVLQLCAGLKS 114

Query: 68  LKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLS 127
           L  GK+VH  +K          L   L+S Y  CG   + R+VFD +  KN++ +N M+S
Sbjct: 115 LTDGKKVHSIIKSNSVGVDEA-LGLKLVSFYATCGDLKEGRRVFDTMEKKNVYLWNFMVS 173

Query: 128 GYANLGMMKH--------------------ARNLFDNMAERDVVSWNTMIIGYAKSGAVE 167
            YA +G  K                     A  LFD + +RDV+SWN+MI GY  +G  E
Sbjct: 174 EYAKIGDFKESICLFKIMVEKGIEGKRPESASELFDKLCDRDVISWNSMISGYVSNGLTE 233

Query: 168 EGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIV 227
            GL  YK +    I  +  +   +L  C     L L + VH   + + F   +  S++++
Sbjct: 234 RGLGIYKQMMYLGIDVDLATIISVLVGCANSGTLSLGKAVHSLAIKSSFERRINFSNTLL 293

Query: 228 DAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEK----NPV 283
           D Y+KCG+L  A R+F++   R+V++WT+M++GY + G  + A  L  +M ++    + V
Sbjct: 294 DMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGWSDGAIILLQQMEKEGVKLDVV 353

Query: 284 SWTTLIAG-----------------------------------YTRNGLGQKALELFTRM 308
           + T+++                                     Y + G  + A  +F+ M
Sbjct: 354 AITSILHACARSGSLDNGKDVHDYIKANNMASNLFVCNALMDMYAKCGSMEGANSVFSTM 413

Query: 309 ----------MILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSL 358
                     M+  ++P+  T +  L ACAS+ +L+ GK++HG+++R  + S+  V ++L
Sbjct: 414 VVKDIISWNTMVGELKPDSRTMACILPACASLSALERGKEIHGYILRNGYSSDRHVANAL 473

Query: 359 IDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPD 418
           +D+Y KCG L   R +FD+  +K+  + W  MI+    HGY  +AI  F++M  + ++PD
Sbjct: 474 VDLYVKCGVLGLARLLFDMIPSKD-LVSWTVMIAGYGMHGYGNEAIATFNEMRDAGIEPD 532

Query: 419 KITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQL 478
           +++   IL AC+HSGL+++G  +F  M +D  I P  EH+AC+++LL++ G   +    +
Sbjct: 533 EVSFISILYACSHSGLLEQGWRFFYIMKNDFNIEPKLEHYACMVDLLSRTGNLSKAYKFI 592

Query: 479 EKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGR 538
           E +P   D+ +W AL   CRI+ +I++  KV +++ +  P+++  + LL++IY+   K  
Sbjct: 593 ETLPIAPDATIWGALLCGCRIYHDIELAEKVAERVFELEPENTGYYVLLANIYAEAEKRE 652

Query: 539 LVEKVRQLINERQFKKEQAISWIEIENKVHAF-SVSDSLHPMRDVLYSVLEQLAGQMGED 597
            V+++R+ I ++  +K    SWIEI+ +V+ F S ++S HP    + S+L+++  +M E+
Sbjct: 653 EVKRMREKIGKKGLRKNPGCSWIEIKGRVNLFVSGNNSSHPHSKKIESLLKKMRRKMKEE 712

Query: 598 A 598
            
Sbjct: 713 G 713


>gi|308080264|ref|NP_001183681.1| uncharacterized protein LOC100502275 [Zea mays]
 gi|238013832|gb|ACR37951.1| unknown [Zea mays]
 gi|413938826|gb|AFW73377.1| hypothetical protein ZEAMMB73_579690 [Zea mays]
          Length = 745

 Score =  328 bits (840), Expect = 7e-87,   Method: Compositional matrix adjust.
 Identities = 173/561 (30%), Positives = 300/561 (53%), Gaps = 33/561 (5%)

Query: 42  LLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKC 101
           L A   +R    T++ ++   +      LG++ H  + L        F+ + L+ MY K 
Sbjct: 130 LRAGSSVRPSRITMSAMVMAASALGDRALGRQFHCQI-LRLGFGVNAFVGSPLVGMYAKM 188

Query: 102 GSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYA 161
           G   DA++VFD++  KN+  YN M++G     M++ AR LF+ M +RD ++W TM+ G+ 
Sbjct: 189 GLIGDAKRVFDEMDGKNVVMYNTMITGLLRCKMVEEARRLFEVMTDRDCITWTTMVTGFT 248

Query: 162 KSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVV 221
           ++G   + L F++ +R   I+ ++++F  ILT C  L  L+  +Q+H  ++ T +  NV 
Sbjct: 249 QNGLESQALNFFRRMRFQGIAIDQYTFGSILTACGALSALEQGKQIHAYIIRTHYDDNVF 308

Query: 222 ISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKN 281
           + S++VD Y+KC  +  A                            E+A   F  M  KN
Sbjct: 309 VGSALVDMYSKCRSIKPA----------------------------ETA---FRRMSCKN 337

Query: 282 PVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHG 341
            +SWT LI GY +NG  ++A+ +F+ M    I P+  T  S + +CA++ SL+ G Q H 
Sbjct: 338 IISWTALIVGYGQNGCSEEAVRVFSEMQRDGIDPDDFTLGSVISSCANLASLEEGAQFHC 397

Query: 342 FLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDE 401
             + +       V ++L+ +Y KCG + D  ++FD      + + W  +++   Q G  +
Sbjct: 398 LALVSGLMHYITVSNALVTLYGKCGSIEDAHRLFDEM-LFHDQVSWTALVTGYAQFGRAK 456

Query: 402 QAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACL 461
           + I LF  M+   VKPD +T   +L+AC+ +G V++G +YF SM  D GI+P  +H+ C+
Sbjct: 457 ETIDLFEKMLAKDVKPDGVTFIGVLSACSRAGFVEKGCSYFHSMQKDHGIVPIDDHYTCM 516

Query: 462 IELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSS 521
           I+L +++G   +    +++MP   D+  W  L   CR+ G++++G+   + L++ +PQ+ 
Sbjct: 517 IDLYSRSGRLKEAEEFIKQMPMHPDAIGWGTLLSACRLRGDMEIGQWAAENLLEIDPQNP 576

Query: 522 ATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRD 581
           A++ LL S+++  G    V ++R+ + +RQ KKE   SWI+ +NKVH FS  D  HP   
Sbjct: 577 ASYVLLCSMHATKGNWNQVAQLRRGMRDRQVKKEPGCSWIKYKNKVHIFSADDQSHPFSK 636

Query: 582 VLYSVLEQLAGQMGEDAPSLD 602
            +Y  LE L  +M E+    D
Sbjct: 637 GIYEKLEWLNSKMLEEGYKPD 657



 Score =  274 bits (700), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 162/497 (32%), Positives = 261/497 (52%), Gaps = 24/497 (4%)

Query: 56  AFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIP 115
           A +L   A ++    G  +H  +  T    P T L NHL++ Y K G    AR+VFD  P
Sbjct: 10  AALLSAAARTEPHAAGA-LHCVILRTLPHPPPTHLLNHLLTAYGKAGRHARARRVFDATP 68

Query: 116 VKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKV 175
             NLF+YN +LS  A+  ++    +LF +MA+RD VS+N +I G++  GA    ++ Y  
Sbjct: 69  HPNLFTYNALLSTLAHARLLDDMDSLFASMAQRDTVSYNAVIAGFSGGGAHARAVRLYHT 128

Query: 176 LRRF--SISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKC 233
           L R   S+  +  + + ++     L +  L RQ H Q+L  GF  N  + S +V  YAK 
Sbjct: 129 LLRAGSSVRPSRITMSAMVMAASALGDRALGRQFHCQILRLGFGVNAFVGSPLVGMYAKM 188

Query: 234 GELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYT 293
           G + DA+R+FDE D ++V+ + TM++G  +   +E A +LF  M +++ ++WTT++ G+T
Sbjct: 189 GLIGDAKRVFDEMDGKNVVMYNTMITGLLRCKMVEEARRLFEVMTDRDCITWTTMVTGFT 248

Query: 294 RNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTI 353
           +NGL  +AL  F RM    I  +Q+TF S L AC ++ +L+ GKQ+H ++IRT++  N  
Sbjct: 249 QNGLESQALNFFRRMRFQGIAIDQYTFGSILTACGALSALEQGKQIHAYIIRTHYDDNVF 308

Query: 354 VMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRS 413
           V S+L+DMYSKC  +      F     K N + W  +I    Q+G  E+A+R+F +M R 
Sbjct: 309 VGSALVDMYSKCRSIKPAETAFRRMSCK-NIISWTALIVGYGQNGCSEEAVRVFSEMQRD 367

Query: 414 SVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHA----CLIELLAQAG 469
            + PD  TL  ++++C +   ++EG  +     H L ++    H+      L+ L  + G
Sbjct: 368 GIDPDDFTLGSVISSCANLASLEEGAQF-----HCLALVSGLMHYITVSNALVTLYGKCG 422

Query: 470 CSDQLMNQLEKMPYEHDSYLWNAL----HGVCRIHGNIDMGRKVVDQLIDQNPQSSATHG 525
             +      ++M + HD   W AL        R    ID+  K++ +  D  P      G
Sbjct: 423 SIEDAHRLFDEMLF-HDQVSWTALVTGYAQFGRAKETIDLFEKMLAK--DVKPDGVTFIG 479

Query: 526 LLSSIYSALGKGRLVEK 542
           +L    SA  +   VEK
Sbjct: 480 VL----SACSRAGFVEK 492



 Score =  125 bits (314), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 87/376 (23%), Positives = 163/376 (43%), Gaps = 78/376 (20%)

Query: 31  GQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFL 90
           G  S+A++    +  +GI +   T   IL  C    +L+ GK++H ++  T       F+
Sbjct: 251 GLESQALNFFRRMRFQGIAIDQYTFGSILTACGALSALEQGKQIHAYIIRTHYDD-NVFV 309

Query: 91  SNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDV 150
            + L+ MY KC S   A   F ++  KN+ S+  ++ G                      
Sbjct: 310 GSALVDMYSKCRSIKPAETAFRRMSCKNIISWTALIVG---------------------- 347

Query: 151 VSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQ 210
                    Y ++G  EE ++ +  ++R  I  ++F+   +++ C  L  L+   Q H  
Sbjct: 348 ---------YGQNGCSEEAVRVFSEMQRDGIDPDDFTLGSVISSCANLASLEEGAQFHCL 398

Query: 211 VLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESA 270
            LV+G +  + +S+++V  Y KCG + DA RLFDE    D ++WT +V+GYA+ G     
Sbjct: 399 ALVSGLMHYITVSNALVTLYGKCGSIEDAHRLFDEMLFHDQVSWTALVTGYAQFGR---- 454

Query: 271 SKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASI 330
                                       ++ ++LF +M+   ++P+  TF   L AC+  
Sbjct: 455 ---------------------------AKETIDLFEKMLAKDVKPDGVTFIGVLSACSRA 487

Query: 331 VSLKHG-------KQVHGFL-IRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKE 382
             ++ G       ++ HG + I  ++       + +ID+YS+ G L +  +         
Sbjct: 488 GFVEKGCSYFHSMQKDHGIVPIDDHY-------TCMIDLYSRSGRLKEAEEFIKQMPMHP 540

Query: 383 NSMLWNTMISALTQHG 398
           +++ W T++SA    G
Sbjct: 541 DAIGWGTLLSACRLRG 556


>gi|347954546|gb|AEP33773.1| organelle transcript processing 82, partial [Lobularia maritima]
          Length = 695

 Score =  327 bits (839), Expect = 8e-87,   Method: Compositional matrix adjust.
 Identities = 185/556 (33%), Positives = 300/556 (53%), Gaps = 38/556 (6%)

Query: 34  SEAISSLDL---LAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFL 90
           S+ +S+L L   +   G+     T  F+L+ CA+SK+ + G+++H H+ L        ++
Sbjct: 67  SDPVSALYLYVCMISLGLLPNCYTFPFLLKSCAKSKAFREGQQIHGHV-LKLGYDLDLYV 125

Query: 91  SNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDV 150
              LISMY + G   DARKVFD+   +++ SY  +++GYA+ G +  A+ +FD +  +DV
Sbjct: 126 HTSLISMYVQNGRLEDARKVFDQSSHRDVVSYTALITGYASKGYIASAQKMFDEIPIKDV 185

Query: 151 VSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQ 210
           VSWN MI GYA++G  +E L+ +K + + ++  +E +   +++ C +   ++L RQVH  
Sbjct: 186 VSWNAMISGYAETGNNKEALELFKEMMKTNVRPDESTMVSVVSACAQSASIELGRQVHSW 245

Query: 211 VLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESA 270
           +   GF SN+ I ++++D Y KCGE+                               E+A
Sbjct: 246 IDDHGFGSNLKIVNALIDLYIKCGEV-------------------------------ETA 274

Query: 271 SKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASI 330
             LF  +  K+ +SW TLI GYT   L ++AL LF  M+     PN  T  S L ACA +
Sbjct: 275 CGLFEGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTMLSILPACAHL 334

Query: 331 VSLKHGKQVHGFLIR--TNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWN 388
            +++ G+ +H ++ +      + +   +SLIDMY+KCG +   +QVFD   N+  S  WN
Sbjct: 335 GAIEIGRWIHVYINKRLKGVANASSHRTSLIDMYAKCGDIEAAQQVFDSILNRSLSS-WN 393

Query: 389 TMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHD 448
            MI     HG    A  +F  M ++ ++PD IT   +L+AC+HSG++  G   F SM  D
Sbjct: 394 AMIFGFAMHGRANAAFDIFSRMRKNEIEPDDITFVGLLSACSHSGMLDLGRHIFRSMKED 453

Query: 449 LGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRK 508
             I P  EH+ C+I+LL  +G   +    +  M  E D  +W +L   C++HGN+++G  
Sbjct: 454 YKITPKLEHYGCMIDLLGHSGLFKEAEEMINTMEMEPDGVIWCSLLKACKMHGNVELGES 513

Query: 509 VVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVH 568
               LI   P++  ++ LLS+IY+  G+   V K+R L+N++  KK    S IEI++ VH
Sbjct: 514 YAQNLIKIEPKNPGSYVLLSNIYATAGRWNEVAKIRALLNDKGMKKVPGCSSIEIDSVVH 573

Query: 569 AFSVSDSLHPMRDVLY 584
            F + D  HP    +Y
Sbjct: 574 EFIIGDKFHPRNREIY 589



 Score =  217 bits (553), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 126/404 (31%), Positives = 215/404 (53%), Gaps = 17/404 (4%)

Query: 135 MKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTI 194
           + +A ++F+ + E +++ WNTM  G+A S      L  Y  +    +  N ++F  +L  
Sbjct: 38  LPYAISVFETIQEPNLLIWNTMFRGHALSSDPVSALYLYVCMISLGLLPNCYTFPFLLKS 97

Query: 195 CVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTW 254
           C K +  +  +Q+HG VL  G+  ++ + +S++  Y + G L DAR++FD++  RDV+++
Sbjct: 98  CAKSKAFREGQQIHGHVLKLGYDLDLYVHTSLISMYVQNGRLEDARKVFDQSSHRDVVSY 157

Query: 255 TTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIR 314
           T +++GYA  G + SA K+F+E+P K+ VSW  +I+GY   G  ++ALELF  MM   +R
Sbjct: 158 TALITGYASKGYIASAQKMFDEIPIKDVVSWNAMISGYAETGNNKEALELFKEMMKTNVR 217

Query: 315 PNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQV 374
           P++ T  S + ACA   S++ G+QVH ++    F SN  ++++LID+Y KCG +     +
Sbjct: 218 PDESTMVSVVSACAQSASIELGRQVHSWIDDHGFGSNLKIVNALIDLYIKCGEVETACGL 277

Query: 375 FDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGL 434
           F+    K+  + WNT+I   T     ++A+ LF +M+RS   P+ +T+  IL AC H G 
Sbjct: 278 FEGLSYKD-VISWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTMLSILPACAHLGA 336

Query: 435 VQEGLTYFESMTHDL-GIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYL---- 489
           ++ G      +   L G+     H   LI++ A+ G        +E      DS L    
Sbjct: 337 IEIGRWIHVYINKRLKGVANASSHRTSLIDMYAKCG-------DIEAAQQVFDSILNRSL 389

Query: 490 --WNALHGVCRIHGNIDMGRKVVDQLIDQ--NPQSSATHGLLSS 529
             WNA+     +HG  +    +  ++      P      GLLS+
Sbjct: 390 SSWNAMIFGFAMHGRANAAFDIFSRMRKNEIEPDDITFVGLLSA 433



 Score =  102 bits (255), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 82/374 (21%), Positives = 156/374 (41%), Gaps = 72/374 (19%)

Query: 31  GQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFL 90
           G   EA+     + +  +R    T+  ++  CA+S S++LG++VH  +           +
Sbjct: 199 GNNKEALELFKEMMKTNVRPDESTMVSVVSACAQSASIELGRQVHSWID-DHGFGSNLKI 257

Query: 91  SNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDV 150
            N LI +Y KCG    A  +F+ +  K++ S+N ++ GY ++ + K A  LF  M     
Sbjct: 258 VNALIDLYIKCGEVETACGLFEGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEM----- 312

Query: 151 VSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQ 210
                      +SG                 S N+ +   IL  C  L  +++ R +H  
Sbjct: 313 ----------LRSGE----------------SPNDVTMLSILPACAHLGAIEIGRWIH-- 344

Query: 211 VLVTGFLSNVVISS----SIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGD 266
           V +   L  V  +S    S++D YAKCG++  A+++FD    R + +W  M+ G+A    
Sbjct: 345 VYINKRLKGVANASSHRTSLIDMYAKCGDIEAAQQVFDSILNRSLSSWNAMIFGFA---- 400

Query: 267 MESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCA 326
                                       +G    A ++F+RM    I P+  TF   L A
Sbjct: 401 ---------------------------MHGRANAAFDIFSRMRKNEIEPDDITFVGLLSA 433

Query: 327 CASIVSLKHGKQVHGFLIRTNFRSNTIV--MSSLIDMYSKCGCLNDGRQVFDLTDNKENS 384
           C+    L  G+ +   + + +++    +     +ID+    G   +  ++ +  + + + 
Sbjct: 434 CSHSGMLDLGRHIFRSM-KEDYKITPKLEHYGCMIDLLGHSGLFKEAEEMINTMEMEPDG 492

Query: 385 MLWNTMISALTQHG 398
           ++W +++ A   HG
Sbjct: 493 VIWCSLLKACKMHG 506


>gi|347954518|gb|AEP33759.1| organelle transcript processing 82, partial [Brassica oleracea]
          Length = 691

 Score =  327 bits (838), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 186/544 (34%), Positives = 298/544 (54%), Gaps = 40/544 (7%)

Query: 52  AETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVF 111
           A T  F+L+ CA+SK+ + G+++H  + +        +    LISMY + G   DARKVF
Sbjct: 83  AYTFPFLLKSCAKSKTFEEGRQIHAQV-MKLGCELDRYAHTSLISMYARNGRLEDARKVF 141

Query: 112 DKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLK 171
           D    +++ S   +++GYA+ G ++ AR +FD + ERDVVSWN MI GY ++   EE L+
Sbjct: 142 DXSSQRDVVSCTALITGYASRGDVRSARKVFDXITERDVVSWNAMITGYVENCGYEEALE 201

Query: 172 FYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVT---GFLSNVVISSSIVD 228
            +K + R ++  +E +   +L+ C +   ++L R++H   LV    GF S++ I ++ + 
Sbjct: 202 LFKEMMRTNVRPDEGTLVSVLSACAQSGSIELGREIH--TLVDDHHGFGSSLKIVNAFIG 259

Query: 229 AYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTL 288
            Y+KCG                               D+E AS LF  +  K+ VSW TL
Sbjct: 260 LYSKCG-------------------------------DVEIASGLFEGLSCKDVVSWNTL 288

Query: 289 IAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIR--T 346
           I GYT   L ++AL LF  M+     PN  T  S L ACA + ++  G+ +H ++ +   
Sbjct: 289 IGGYTHMNLYKEALLLFQEMLRSGESPNDVTMLSVLPACAHLGAIDIGRWIHVYIDKRLK 348

Query: 347 NFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRL 406
              + + + +SLIDMY+KCG +    QVF+   +K  S  WN MI     HG    A  L
Sbjct: 349 GVTNGSALRTSLIDMYAKCGDIEAAHQVFNSMMHKSLSS-WNAMIFGFAMHGRANAAFDL 407

Query: 407 FHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLA 466
           F  M ++ ++PD ITL  +L+AC+HSGL+  G   F+S+T D  I P  EH+ C+I+LL 
Sbjct: 408 FSRMRKNGIEPDDITLVGLLSACSHSGLLDLGRHIFKSVTQDYNITPKLEHYGCMIDLLG 467

Query: 467 QAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGL 526
            AG   +    +  MP E D  +W +L   C++HGN+++      +L++  P++S ++ L
Sbjct: 468 HAGLFKEAEEIIHMMPMEPDGVIWCSLLKACKMHGNLELAESFAQKLMEIEPENSGSYVL 527

Query: 527 LSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSV 586
           LS+IY+  G+   V ++R+++N +  KK    S IEI++ VH F + D LHP    +Y +
Sbjct: 528 LSNIYATAGRWEDVARIREVLNGKGMKKVPGCSSIEIDSVVHEFIIGDKLHPQSREIYRM 587

Query: 587 LEQL 590
           LE++
Sbjct: 588 LEEM 591



 Score =  191 bits (486), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 119/399 (29%), Positives = 206/399 (51%), Gaps = 6/399 (1%)

Query: 135 MKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTI 194
           + +A ++F+   E +++ WNTM+ G A S  +   L+ Y  +       N ++F  +L  
Sbjct: 33  LPYAVSVFETXQEPNLLIWNTMLRGLASSSDLVSPLEMYVRMVSXGHVPNAYTFPFLLKS 92

Query: 195 CVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTW 254
           C K +  +  RQ+H QV+  G   +    +S++  YA+ G L DAR++FD +  RDV++ 
Sbjct: 93  CAKSKTFEEGRQIHAQVMKLGCELDRYAHTSLISMYARNGRLEDARKVFDXSSQRDVVSC 152

Query: 255 TTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIR 314
           T +++GYA  GD+ SA K+F+ + E++ VSW  +I GY  N   ++ALELF  MM   +R
Sbjct: 153 TALITGYASRGDVRSARKVFDXITERDVVSWNAMITGYVENCGYEEALELFKEMMRTNVR 212

Query: 315 PNQHTFSSCLCACASIVSLKHGKQVHGFL-IRTNFRSNTIVMSSLIDMYSKCGCLNDGRQ 373
           P++ T  S L ACA   S++ G+++H  +     F S+  ++++ I +YSKCG +     
Sbjct: 213 PDEGTLVSVLSACAQSGSIELGREIHTLVDDHHGFGSSLKIVNAFIGLYSKCGDVEIASG 272

Query: 374 VFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSG 433
           +F+    K + + WNT+I   T     ++A+ LF +M+RS   P+ +T+  +L AC H G
Sbjct: 273 LFEGLSCK-DVVSWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTMLSVLPACAHLG 331

Query: 434 LVQEGLTYFESMTHDL-GIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNA 492
            +  G      +   L G+         LI++ A+ G  +        M ++  S  WNA
Sbjct: 332 AIDIGRWIHVYIDKRLKGVTNGSALRTSLIDMYAKCGDIEAAHQVFNSMMHKSLSS-WNA 390

Query: 493 LHGVCRIHGNIDMGRKVVDQLIDQN--PQSSATHGLLSS 529
           +     +HG  +    +  ++      P      GLLS+
Sbjct: 391 MIFGFAMHGRANAAFDLFSRMRKNGIEPDDITLVGLLSA 429


>gi|147866113|emb|CAN78822.1| hypothetical protein VITISV_006669 [Vitis vinifera]
          Length = 599

 Score =  327 bits (838), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 165/477 (34%), Positives = 264/477 (55%), Gaps = 16/477 (3%)

Query: 118 NLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLR 177
           ++F  N ++    + G +  AR +FD    RD+VSWN+MI GY + G   E L FY+ ++
Sbjct: 113 DIFVSNAVIHLLVSCGDLDGARKMFDKSCVRDLVSWNSMINGYVRRGWAYEALNFYREMK 172

Query: 178 RFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELS 237
              I  +E +  G+++ C +LE+L L R+ H  +   G    V ++++++D Y KCG L 
Sbjct: 173 VEGIKPDEVTMIGVVSSCAQLEDLDLGRESHCYIEENGLKLTVPLANALMDMYMKCGNLE 232

Query: 238 DARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGL 297
            AR+LFD    + +++WTTM               LF+EMP+K+ V W  +I GY     
Sbjct: 233 SARKLFDSMTNKTMVSWTTM---------------LFDEMPDKDVVPWNAMIGGYVHANR 277

Query: 298 GQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSS 357
           G++AL LF  M  + I P++ T  SCL AC+ + +L  G  +H ++ +     N  + ++
Sbjct: 278 GKEALALFNEMQAMNINPDEVTMVSCLSACSQLGALDVGIWIHHYIEKHELSLNVALGTA 337

Query: 358 LIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKP 417
           LIDMY+KCG +    QVF     + NS+ W  +IS L  HG    AI  F +M+ +SV P
Sbjct: 338 LIDMYAKCGKITKAIQVFQELPGR-NSLTWTAIISGLALHGNAHGAIAYFSEMIDNSVMP 396

Query: 418 DKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQ 477
           D++T   +L+AC H GLV+EG  YF  M+    + P  +H++C+++LL +AG  ++    
Sbjct: 397 DEVTFLGLLSACCHGGLVEEGRKYFSQMSSKFNLSPKLKHYSCMVDLLGRAGLLEEAEEL 456

Query: 478 LEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKG 537
           ++ MP E D+ +W AL   CRIHGN+ MG +   +L+  +P  S  + LL+++Y      
Sbjct: 457 IKSMPIEADAVVWGALFFACRIHGNVLMGERAASKLLQMDPHDSGIYVLLANMYGEAEMW 516

Query: 538 RLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQM 594
           +   K R+L+ +R  +K    S IE+   V+ F V D  HP  + +Y  L QL  Q+
Sbjct: 517 KEAGKXRKLMRQRGVEKTPGCSSIEVNGIVYEFIVRDKSHPQSEQIYECLIQLTRQL 573



 Score =  156 bits (395), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 109/440 (24%), Positives = 200/440 (45%), Gaps = 61/440 (13%)

Query: 135 MKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYK-VLRRFSISCNEFSFAGILT 193
           + +  N+  N    +  SWN  I G+  S    E +  YK VL+      + +++  +  
Sbjct: 28  LDYCTNILFNTRNPNTFSWNVAIRGFLDSENPREAVVLYKRVLQCDGTKPDNYTYPLLFK 87

Query: 194 ICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLT 253
            C +L  +++  ++ G VL  GF S++ +S++++     CG+L  AR++FD++  RD+++
Sbjct: 88  ACARLSLIRMGSEILGHVLHLGFDSDIFVSNAVIHLLVSCGDLDGARKMFDKSCVRDLVS 147

Query: 254 WTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRI 313
           W +M++G                               Y R G   +AL  +  M +  I
Sbjct: 148 WNSMING-------------------------------YVRRGWAYEALNFYREMKVEGI 176

Query: 314 RPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQ 373
           +P++ T    + +CA +  L  G++ H ++     +    + ++L+DMY KCG L   R+
Sbjct: 177 KPDEVTMIGVVSSCAQLEDLDLGRESHCYIEENGLKLTVPLANALMDMYMKCGNLESARK 236

Query: 374 VFDLTDNKE----NSML-----------WNTMISALTQHGYDEQAIRLFHDMVRSSVKPD 418
           +FD   NK      +ML           WN MI         ++A+ LF++M   ++ PD
Sbjct: 237 LFDSMTNKTMVSWTTMLFDEMPDKDVVPWNAMIGGYVHANRGKEALALFNEMQAMNINPD 296

Query: 419 KITLAVILNACTHSGLVQEGLT---YFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLM 475
           ++T+   L+AC+  G +  G+    Y E   H+L +  N      LI++ A+ G   + +
Sbjct: 297 EVTMVSCLSACSQLGALDVGIWIHHYIEK--HELSL--NVALGTALIDMYAKCGKITKAI 352

Query: 476 NQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQN--PQSSATHGLLSSIYSA 533
              +++P   +S  W A+     +HGN         ++ID +  P      GLL    SA
Sbjct: 353 QVFQELP-GRNSLTWTAIISGLALHGNAHGAIAYFSEMIDNSVMPDEVTFLGLL----SA 407

Query: 534 LGKGRLVEKVRQLINERQFK 553
              G LVE+ R+  ++   K
Sbjct: 408 CCHGGLVEEGRKYFSQMSSK 427



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 85/388 (21%), Positives = 161/388 (41%), Gaps = 80/388 (20%)

Query: 28  ISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPT 87
           + +G   EA++    +   GI+    T+  ++  CA+ + L LG+  H +++    K  T
Sbjct: 156 VRRGWAYEALNFYREMKVEGIKPDEVTMIGVVSSCAQLEDLDLGRESHCYIEENGLKL-T 214

Query: 88  TFLSNHLISMYFKCGSDVDARKVFD----------------KIPVKNLFSYNNMLSGYAN 131
             L+N L+ MY KCG+   ARK+FD                ++P K++  +N M+ GY +
Sbjct: 215 VPLANALMDMYMKCGNLESARKLFDSMTNKTMVSWTTMLFDEMPDKDVVPWNAMIGGYVH 274

Query: 132 LGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGI 191
               K A  LF+ M                               +  +I+ +E +    
Sbjct: 275 ANRGKEALALFNEM-------------------------------QAMNINPDEVTMVSC 303

Query: 192 LTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDV 251
           L+ C +L  L +   +H  +       NV + ++++D YAKCG+++ A ++F E   R+ 
Sbjct: 304 LSACSQLGALDVGIWIHHYIEKHELSLNVALGTALIDMYAKCGKITKAIQVFQELPGRNS 363

Query: 252 LTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMIL 311
           LTWT ++SG A  G+   A   F+EM + +                              
Sbjct: 364 LTWTAIISGLALHGNAHGAIAYFSEMIDNS------------------------------ 393

Query: 312 RIRPNQHTFSSCLCACASIVSLKHGKQVHGFL-IRTNFRSNTIVMSSLIDMYSKCGCLND 370
            + P++ TF   L AC     ++ G++    +  + N        S ++D+  + G L +
Sbjct: 394 -VMPDEVTFLGLLSACCHGGLVEEGRKYFSQMSSKFNLSPKLKHYSCMVDLLGRAGLLEE 452

Query: 371 GRQVFDLTDNKENSMLWNTMISALTQHG 398
             ++      + ++++W  +  A   HG
Sbjct: 453 AEELIKSMPIEADAVVWGALFFACRIHG 480



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 38/167 (22%), Positives = 89/167 (53%), Gaps = 2/167 (1%)

Query: 266 DMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILR-IRPNQHTFSSCL 324
           D++  + +       N  SW   I G+  +   ++A+ L+ R++     +P+ +T+    
Sbjct: 27  DLDYCTNILFNTRNPNTFSWNVAIRGFLDSENPREAVVLYKRVLQCDGTKPDNYTYPLLF 86

Query: 325 CACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENS 384
            ACA +  ++ G ++ G ++   F S+  V +++I +   CG L+  R++FD +  ++  
Sbjct: 87  KACARLSLIRMGSEILGHVLHLGFDSDIFVSNAVIHLLVSCGDLDGARKMFDKSCVRD-L 145

Query: 385 MLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTH 431
           + WN+MI+   + G+  +A+  + +M    +KPD++T+  ++++C  
Sbjct: 146 VSWNSMINGYVRRGWAYEALNFYREMKVEGIKPDEVTMIGVVSSCAQ 192



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 51/221 (23%), Positives = 99/221 (44%), Gaps = 21/221 (9%)

Query: 11  NRKNLPNNCLIQSFLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKL 70
           ++  +P N +I  ++   ++G+  EA++  + +    I     T+   L  C++  +L +
Sbjct: 259 DKDVVPWNAMIGGYVH-ANRGK--EALALFNEMQAMNINPDEVTMVSCLSACSQLGALDV 315

Query: 71  GKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYA 130
           G  +H +++     +    L   LI MY KCG    A +VF ++P +N  ++  ++SG A
Sbjct: 316 GIWIHHYIE-KHELSLNVALGTALIDMYAKCGKITKAIQVFQELPGRNSLTWTAIISGLA 374

Query: 131 ----NLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYK----------VL 176
                 G + +   + DN    D V++  ++      G VEEG K++            L
Sbjct: 375 LHGNAHGAIAYFSEMIDNSVMPDEVTFLGLLSACCHGGLVEEGRKYFSQMSSKFNLSPKL 434

Query: 177 RRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFL 217
           + +S   +    AG+L    + EEL  +  +    +V G L
Sbjct: 435 KHYSCMVDLLGRAGLLE---EAEELIKSMPIEADAVVWGAL 472


>gi|147836314|emb|CAN59994.1| hypothetical protein VITISV_012660 [Vitis vinifera]
          Length = 768

 Score =  327 bits (838), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 186/629 (29%), Positives = 323/629 (51%), Gaps = 67/629 (10%)

Query: 31  GQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFL 90
           G+ SEA+  +  + +  ++L   T + +L  CA  + L+ GK +H  L L         +
Sbjct: 117 GRFSEALFLVYSMHRSHMKLSESTFSSVLSVCARLRCLRDGKLIHC-LVLKSGSESFELV 175

Query: 91  SNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDV 150
            + L+  Y  C    +AR+VFD +  +N   ++ ML GY    +M  A ++F  M  RDV
Sbjct: 176 GSALLYFYASCFEIGEARRVFDVLVRRNEVLWSLMLVGYVTCNVMDDALSVFVKMPRRDV 235

Query: 151 VSWNTMIIGYAKSG-AVEEGLKFYKV-LRRFSISCNEFSFAGILTICVKLEELKLTRQVH 208
           V+W T+I G++K+G    + L+ +++ +R    + NEF+F  ++  C +L  L + R VH
Sbjct: 236 VAWTTLISGFSKNGDGCGKALEMFRLMMRSGETTPNEFTFDCVVRACGRLGILSVGRTVH 295

Query: 209 GQVLVTGFLSNVVISSSIVDAYAKC-------------------------------GELS 237
           G ++  G   +  I  ++V+ Y +C                               G + 
Sbjct: 296 GLLMKCGLEYDPSIGGALVEFYCECEAIDDALRVCKGVVNPCLNALNSLIEGLISMGRIE 355

Query: 238 DARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMP------------------- 278
           DA  +F+     + +++  M+ GYA  G M+ + +LF +MP                   
Sbjct: 356 DAELVFNGMTEMNPVSYNLMIKGYAVGGQMDDSKRLFEKMPCRTIFSSNTMISVYSRNGE 415

Query: 279 -------------EKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLC 325
                        EK+PV+W ++I+GY  +G  ++AL+L+  M  L I+  + TFS+   
Sbjct: 416 IDKALELFEETKNEKDPVTWNSMISGYIHSGQPEEALKLYITMHRLSIQQTRSTFSALFH 475

Query: 326 ACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSM 385
           AC+ + SL+ G+ +H  LI+T F SN  V +SLIDMYSKCG + + +  F ++    N  
Sbjct: 476 ACSCLGSLQQGQLLHAHLIKTPFESNVYVGTSLIDMYSKCGSIMEAQTSF-VSIFSPNVA 534

Query: 386 LWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESM 445
            W  +I+    HG   +AI LF  M+   + P+  T   +L+AC+ +GLV EG+  F SM
Sbjct: 535 AWTALINGHAYHGLGSEAISLFDXMIEQGLAPNGATFVGVLSACSRAGLVNEGMKIFHSM 594

Query: 446 THDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDM 505
                + P  EH+AC+++LL ++G   +    ++KMP E D  +W AL   C    ++++
Sbjct: 595 ERCYSVTPTLEHYACVVDLLGRSGHIREAEEFIKKMPLEADGVVWGALLSACWFWMDLEV 654

Query: 506 GRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIEN 565
           G +V +++   +P+  +++ +LS+IY+ LG+ R    VR+++   + KK+   SWIE+ N
Sbjct: 655 GERVAEKMFSFDPKPISSYVILSNIYAGLGRWREKMMVRKILRGFKVKKDPGCSWIELNN 714

Query: 566 KVHAFSVSDSLHPMRDVLYSVLEQLAGQM 594
           K+H FS+ D  HP  +++Y+ LE L   +
Sbjct: 715 KIHVFSIEDRSHPYCNMIYATLEHLTANI 743



 Score =  180 bits (456), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 118/394 (29%), Positives = 199/394 (50%), Gaps = 17/394 (4%)

Query: 116 VKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKV 175
           +  + S N  +S YA    +  AR LFD M +R VVSWNTMI  Y+K G   E L     
Sbjct: 69  LSEIISTNIAISNYAKQSKLDVARQLFDQMPQRTVVSWNTMISSYSKHGRFSEALFLVYS 128

Query: 176 LRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGE 235
           + R  +  +E +F+ +L++C +L  L+  + +H  VL +G  S  ++ S+++  YA C E
Sbjct: 129 MHRSHMKLSESTFSSVLSVCARLRCLRDGKLIHCLVLKSGSESFELVGSALLYFYASCFE 188

Query: 236 LSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRN 295
           + +ARR+FD    R+ + W+ M+ GY     M+ A  +F +MP ++ V+WTTLI+G+++N
Sbjct: 189 IGEARRVFDVLVRRNEVLWSLMLVGYVTCNVMDDALSVFVKMPRRDVVAWTTLISGFSKN 248

Query: 296 GLG-QKALELFTRMMIL-RIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTI 353
           G G  KALE+F  MM      PN+ TF   + AC  +  L  G+ VHG L++     +  
Sbjct: 249 GDGCGKALEMFRLMMRSGETTPNEFTFDCVVRACGRLGILSVGRTVHGLLMKCGLEYDPS 308

Query: 354 VMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRS 413
           +  +L++ Y +C  ++D  +V     N   + L N++I  L   G  E A  +F+ M   
Sbjct: 309 IGGALVEFYCECEAIDDALRVCKGVVNPCLNAL-NSLIEGLISMGRIEDAELVFNGM--- 364

Query: 414 SVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQ 473
             + + ++  +++      G + +    FE M        N      +I + ++ G  D+
Sbjct: 365 -TEMNPVSYNLMIKGYAVGGQMDDSKRLFEKMPCRTIFSSNT-----MISVYSRNGEIDK 418

Query: 474 LMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGR 507
            +   E+   E D   WN++     I G I  G+
Sbjct: 419 ALELFEETKNEKDPVTWNSM-----ISGYIHSGQ 447



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 85/340 (25%), Positives = 162/340 (47%), Gaps = 51/340 (15%)

Query: 245 ETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALEL 304
           +++  ++++    +S YAK   ++ A +LF++MP++  VSW T+I+ Y+++G   +AL L
Sbjct: 66  QSNLSEIISTNIAISNYAKQSKLDVARQLFDQMPQRTVVSWNTMISSYSKHGRFSEALFL 125

Query: 305 FTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSK 364
              M    ++ ++ TFSS L  CA +  L+ GK +H  ++++   S  +V S+L+  Y+ 
Sbjct: 126 VYSMHRSHMKLSESTFSSVLSVCARLRCLRDGKLIHCLVLKSGSESFELVGSALLYFYAS 185

Query: 365 CGCLNDGRQVFD-----------------LTDN-------------KENSMLWNTMISAL 394
           C  + + R+VFD                 +T N             + + + W T+IS  
Sbjct: 186 CFEIGEARRVFDVLVRRNEVLWSLMLVGYVTCNVMDDALSVFVKMPRRDVVAWTTLISGF 245

Query: 395 TQHGYD-EQAIRLFHDMVRSS-VKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGII 452
           +++G    +A+ +F  M+RS    P++ T   ++ AC   G++  G T      H L + 
Sbjct: 246 SKNGDGCGKALEMFRLMMRSGETTPNEFTFDCVVRACGRLGILSVGRT-----VHGLLMK 300

Query: 453 PNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGR----- 507
              E+   +   L +  C  + ++   ++     +   NAL+ +  I G I MGR     
Sbjct: 301 CGLEYDPSIGGALVEFYCECEAIDDALRVCKGVVNPCLNALNSL--IEGLISMGRIEDAE 358

Query: 508 KVVDQLIDQNPQSSATHGLLSSIYSALGK----GRLVEKV 543
            V + + + NP S   + L+   Y+  G+     RL EK+
Sbjct: 359 LVFNGMTEMNPVS---YNLMIKGYAVGGQMDDSKRLFEKM 395



 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 45/158 (28%), Positives = 78/158 (49%), Gaps = 11/158 (6%)

Query: 28  ISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTP- 86
           I  GQ  EA+     + +  I+    T + +   C+   SL+ G+ +H HL     KTP 
Sbjct: 443 IHSGQPEEALKLYITMHRLSIQQTRSTFSALFHACSCLGSLQQGQLLHAHLI----KTPF 498

Query: 87  --TTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDN 144
               ++   LI MY KCGS ++A+  F  I   N+ ++  +++G+A  G+   A +LFD 
Sbjct: 499 ESNVYVGTSLIDMYSKCGSIMEAQTSFVSIFSPNVAAWTALINGHAYHGLGSEAISLFDX 558

Query: 145 MAERDVVSWNTMIIGY----AKSGAVEEGLKFYKVLRR 178
           M E+ +       +G     +++G V EG+K +  + R
Sbjct: 559 MIEQGLAPNGATFVGVLSACSRAGLVNEGMKIFHSMER 596


>gi|357165485|ref|XP_003580399.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Brachypodium distachyon]
          Length = 886

 Score =  327 bits (838), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 171/583 (29%), Positives = 317/583 (54%), Gaps = 41/583 (7%)

Query: 25  LSLISK-GQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQR 83
           +S +SK G++ EA+  +  +  +G+R  + T    L  CA   SL+ GK++H+       
Sbjct: 263 ISALSKSGRVREALDMVVDMHGKGVRPDSTTYTSSLTACARLSSLEWGKQLHV------- 315

Query: 84  KTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFD 143
                                    +V   +P  + +  + M+  YA  G  K A+ +F 
Sbjct: 316 -------------------------QVIRNLPHIDPYVASAMVELYAKCGCFKEAKRVFS 350

Query: 144 NMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKL 203
           ++ +R+ VSW  +I G+ + G   E ++ +  +R   ++ ++F+ A +++ C    ++ L
Sbjct: 351 SLRDRNSVSWTVLIGGFLQYGCFSESVELFNQMRAELMAVDQFALATLISGCCNTMDICL 410

Query: 204 TRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAK 263
             Q+H   L +G    VV+S+S++  YAKCG L +A  +F+    RD+++WT M++ Y++
Sbjct: 411 GSQLHSLCLKSGHTRAVVVSNSLISMYAKCGNLQNAELIFNFMAERDIVSWTGMITAYSQ 470

Query: 264 LGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILR-IRPNQHTFSS 322
           +G++  A + F++M  +N ++W  ++  Y ++G  +  L++++ M+  + + P+  T+ +
Sbjct: 471 VGNIAKAREFFDDMSTRNVITWNAMLGAYIQHGAEEDGLKMYSDMLTEKDVIPDWVTYVT 530

Query: 323 CLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKE 382
               CA I + K G Q+ G  ++     +T V++++I MYSKCG +++ R+ FD    K+
Sbjct: 531 LFRGCADIGANKLGDQIIGHTVKVGLILDTSVVNAVITMYSKCGRISEARKAFDFLSRKD 590

Query: 383 NSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYF 442
             + WN MI+  +QHG  +QAI +F D++    KPD I+   +L+ C+HSGLV+EG  YF
Sbjct: 591 -LVSWNAMITGYSQHGMGKQAIEIFDDILNKGAKPDYISYVAVLSGCSHSGLVEEGKFYF 649

Query: 443 ESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGN 502
           + M  D  I P  EH +C+++LL +AG   +  N +++MP +  + +W AL   C+ HGN
Sbjct: 650 DMMKRDHNISPGLEHFSCMVDLLGRAGHLIEAKNLIDEMPMKPTAEVWGALLSACKTHGN 709

Query: 503 IDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIE 562
            D+       L D +   S  + LL+ +Y+  GK     +VR+L+ ++  KK    SW+E
Sbjct: 710 NDLAELAAKHLFDLDSPGSGGYMLLAKMYADAGKSDDSAQVRKLMRDKGIKKSPGYSWME 769

Query: 563 IENKVHAFSVSDSLHP----MRDVLYSVLEQLA--GQMGEDAP 599
           + N+VH F   D  HP    +R+ L  ++E++A  G +  ++P
Sbjct: 770 VNNRVHVFKAEDVSHPQVIAIREKLDELMEKIAHLGYVRTESP 812



 Score =  201 bits (512), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 117/384 (30%), Positives = 208/384 (54%), Gaps = 8/384 (2%)

Query: 53  ETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVF- 111
           + LA  L+ C    +L   + +H  L +        FL N L+  Y  CG+  DAR +  
Sbjct: 26  QALADALRSCGARSALTGARTLHSRL-INVGLASVVFLQNTLLHAYLSCGALSDARNLLR 84

Query: 112 DKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLK 171
           D+I   N+ ++N M++GYA LG +  A  LF  M  RDV SWNT++ GY +SG     L 
Sbjct: 85  DEITEPNVITHNIMMNGYAKLGSLSDAVELFGRMPTRDVASWNTIMSGYYQSGQFLNALD 144

Query: 172 FYKVLRRFSISC-NEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLS--NVVISSSIVD 228
            +  +R+   S  N F+F  ++  C  L   ++  Q+ G  L++ F S  +  + +++VD
Sbjct: 145 IFVSMRQTGDSLPNAFTFGCVMKSCGALGWHEVALQLLG--LLSKFDSQDDPDVQTALVD 202

Query: 229 AYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTL 288
              +CG +  A + F       ++   +M+ GYAK   ++ A ++F  MPE++ VSW  +
Sbjct: 203 MLVRCGAMDFASKQFSRIKNPTIICRNSMLVGYAKSHGVDHALEIFKSMPERDVVSWNMV 262

Query: 289 IAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNF 348
           I+  +++G  ++AL++   M    +RP+  T++S L ACA + SL+ GKQ+H  +IR   
Sbjct: 263 ISALSKSGRVREALDMVVDMHGKGVRPDSTTYTSSLTACARLSSLEWGKQLHVQVIRNLP 322

Query: 349 RSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFH 408
             +  V S+++++Y+KCGC  + ++VF    ++ NS+ W  +I    Q+G   +++ LF+
Sbjct: 323 HIDPYVASAMVELYAKCGCFKEAKRVFSSLRDR-NSVSWTVLIGGFLQYGCFSESVELFN 381

Query: 409 DMVRSSVKPDKITLAVILNACTHS 432
            M    +  D+  LA +++ C ++
Sbjct: 382 QMRAELMAVDQFALATLISGCCNT 405



 Score =  159 bits (402), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 96/395 (24%), Positives = 192/395 (48%), Gaps = 37/395 (9%)

Query: 11  NRKNLPNNCLIQSFLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKL 70
           +R ++    LI  FL     G  SE++   + +    + +    LA ++  C  +  + L
Sbjct: 354 DRNSVSWTVLIGGFLQY---GCFSESVELFNQMRAELMAVDQFALATLISGCCNTMDICL 410

Query: 71  GKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYA 130
           G ++H  L L    T    +SN LISMY KCG+  +A  +F+ +  +++ S+  M++ Y+
Sbjct: 411 GSQLH-SLCLKSGHTRAVVVSNSLISMYAKCGNLQNAELIFNFMAERDIVSWTGMITAYS 469

Query: 131 NLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYK-VLRRFSISCNEFSFA 189
            +G +  AR  FD+M+ R+V++WN M+  Y + GA E+GLK Y  +L    +  +  ++ 
Sbjct: 470 QVGNIAKAREFFDDMSTRNVITWNAMLGAYIQHGAEEDGLKMYSDMLTEKDVIPDWVTYV 529

Query: 190 GILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDAR 249
            +   C  +   KL  Q+ G  +  G + +  + ++++  Y+KCG +S+AR+ FD    +
Sbjct: 530 TLFRGCADIGANKLGDQIIGHTVKVGLILDTSVVNAVITMYSKCGRISEARKAFDFLSRK 589

Query: 250 DVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMM 309
           D+++W  M++GY                               +++G+G++A+E+F  ++
Sbjct: 590 DLVSWNAMITGY-------------------------------SQHGMGKQAIEIFDDIL 618

Query: 310 ILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRT-NFRSNTIVMSSLIDMYSKCGCL 368
               +P+  ++ + L  C+    ++ GK     + R  N        S ++D+  + G L
Sbjct: 619 NKGAKPDYISYVAVLSGCSHSGLVEEGKFYFDMMKRDHNISPGLEHFSCMVDLLGRAGHL 678

Query: 369 NDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQA 403
            + + + D    K  + +W  ++SA   HG ++ A
Sbjct: 679 IEAKNLIDEMPMKPTAEVWGALLSACKTHGNNDLA 713


>gi|255558480|ref|XP_002520265.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223540484|gb|EEF42051.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 681

 Score =  327 bits (838), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 165/509 (32%), Positives = 287/509 (56%), Gaps = 2/509 (0%)

Query: 54  TLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDK 113
            LA ++  CA+  +++ GK+VH  + +   +  +  +S+ LI++Y KCG    A  V   
Sbjct: 175 VLASVIGACADLGAIEYGKQVHARILMDDVELDSVLISS-LINLYAKCGHLDTANYVLKM 233

Query: 114 IPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFY 173
           +   + FS + ++ GYAN G M  A  +F   +    V WN++I GY  +    +     
Sbjct: 234 MDEVDDFSLSALIMGYANCGRMSDAVRIFRTKSNPCFVVWNSLISGYVNNHEEMKAFALV 293

Query: 174 KVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKC 233
             ++   +  +  +   IL+ C      +  +Q+HG V   G + +V+++S+ +DAY+KC
Sbjct: 294 NEMKNNRVQVDSSTITVILSACSSTGNAQYAKQMHGYVCKVGLIDSVIVASAFIDAYSKC 353

Query: 234 GELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYT 293
              +DA +LF E  A D +   +M++ Y   G +  A  +F  MP K+ +SW ++I G  
Sbjct: 354 RNPNDACKLFSELKAYDTVLLNSMITAYCNCGRIRDAKNIFETMPSKSLISWNSIIVGLA 413

Query: 294 RNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTI 353
           +N    +AL++F +M  L +R ++ + +S + ACA I SL+ G+QV    I T   S+  
Sbjct: 414 QNAYPLEALDVFGKMNKLDLRMDRFSLASVISACACISSLELGEQVFARAIITGLESDQA 473

Query: 354 VMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRS 413
           V +SL+D Y KCG + +GR++FD +  K + + WN+M+     +GY  + + LF++M ++
Sbjct: 474 VSTSLVDFYCKCGFIENGRKLFD-SMIKTDEVSWNSMLMGYATNGYGLETLTLFNEMKQA 532

Query: 414 SVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQ 473
            ++P  IT   +L+AC H GLV+EG  +F  M +D  I P  EH++C+++L A+AGC  +
Sbjct: 533 GLRPTDITFTGVLSACDHCGLVEEGRKWFNIMKYDYHIDPGIEHYSCMVDLFARAGCLKE 592

Query: 474 LMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSA 533
            +N +E MP+E D  +W+++   C  HG+ D+G+KV  Q+I  NP+SS+ +  LS I++ 
Sbjct: 593 ALNLVEHMPFEADCSMWSSVLRGCVAHGDKDLGKKVAQQIIQLNPESSSAYVQLSGIFAT 652

Query: 534 LGKGRLVEKVRQLINERQFKKEQAISWIE 562
            G       VR+++ E+Q KK    SW +
Sbjct: 653 SGDWESSALVRKIMTEKQVKKHPGFSWAD 681



 Score =  198 bits (504), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 138/509 (27%), Positives = 232/509 (45%), Gaps = 67/509 (13%)

Query: 50  LPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDV-DAR 108
           L   +LA +LQ      S+  GK++HL          T  L+N L+ MY +CG  + DA 
Sbjct: 3   LELRSLARLLQSLNTHSSIHQGKQLHLLFLKKGLINATVSLANRLLQMYARCGGTMTDAH 62

Query: 109 KVFDKIPVKNLFSYNNML-------------------------------SGYANLGMMKH 137
            +FD++P +N FS+N M+                               SG+A  G +  
Sbjct: 63  NLFDEMPERNCFSWNTMIEGYMRVGDKERSLKLFDLMPQKNDYSWNVVISGFAKAGELDV 122

Query: 138 ARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSI--SCNE-FSFAGILTI 194
           A+ LF+ M  R+ V+WN+MI GYA++G   E +  +K L    +  SC + F  A ++  
Sbjct: 123 AKKLFNEMPRRNGVAWNSMIHGYARNGFAREAVGLFKELNSNPLEKSCGDTFVLASVIGA 182

Query: 195 CVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTW 254
           C  L  ++  +QVH ++L+     + V+ SS+++ YAKCG L  A  +    D  D  + 
Sbjct: 183 CADLGAIEYGKQVHARILMDDVELDSVLISSLINLYAKCGHLDTANYVLKMMDEVDDFSL 242

Query: 255 TTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIR 314
           + ++ GYA  G M  A ++F        V W +LI+GY  N    KA  L   M   R++
Sbjct: 243 SALIMGYANCGRMSDAVRIFRTKSNPCFVVWNSLISGYVNNHEEMKAFALVNEMKNNRVQ 302

Query: 315 PNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQV 374
            +  T +  L AC+S  + ++ KQ+HG++ +     + IV S+ ID YSKC   ND  ++
Sbjct: 303 VDSSTITVILSACSSTGNAQYAKQMHGYVCKVGLIDSVIVASAFIDAYSKCRNPNDACKL 362

Query: 375 FDLTDNKE----NSML--------------------------WNTMISALTQHGYDEQAI 404
           F      +    NSM+                          WN++I  L Q+ Y  +A+
Sbjct: 363 FSELKAYDTVLLNSMITAYCNCGRIRDAKNIFETMPSKSLISWNSIIVGLAQNAYPLEAL 422

Query: 405 RLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIEL 464
            +F  M +  ++ D+ +LA +++AC     ++ G   F       G+  +Q     L++ 
Sbjct: 423 DVFGKMNKLDLRMDRFSLASVISACACISSLELGEQVFARAIIT-GLESDQAVSTSLVDF 481

Query: 465 LAQAGCSDQLMNQLEKMPYEHDSYLWNAL 493
             + G  +      + M  + D   WN++
Sbjct: 482 YCKCGFIENGRKLFDSM-IKTDEVSWNSM 509



 Score = 66.2 bits (160), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 62/280 (22%), Positives = 120/280 (42%), Gaps = 43/280 (15%)

Query: 13  KNLPNNCLIQSFLSLISKGQLSEAISSLDLLAQRG---IRLPAETLAFILQQCAESKSLK 69
           + +P+  LI     ++   Q +  + +LD+  +     +R+   +LA ++  CA   SL+
Sbjct: 395 ETMPSKSLISWNSIIVGLAQNAYPLEALDVFGKMNKLDLRMDRFSLASVISACACISSLE 454

Query: 70  LGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGY 129
           LG++V     +T  ++    +S  L+  Y KCG   + RK+FD +   +  S+N+ML GY
Sbjct: 455 LGEQVFARAIITGLESDQA-VSTSLVDFYCKCGFIENGRKLFDSMIKTDEVSWNSMLMGY 513

Query: 130 ANLGMMKHARNLFDNMAERDV----VSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNE 185
           A  G       LF+ M +  +    +++  ++      G VEEG K++ +++        
Sbjct: 514 ATNGYGLETLTLFNEMKQAGLRPTDITFTGVLSACDHCGLVEEGRKWFNIMK-------- 565

Query: 186 FSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDE 245
                                 H    +  +       S +VD +A+ G L +A  L + 
Sbjct: 566 -------------------YDYHIDPGIEHY-------SCMVDLFARAGCLKEALNLVEH 599

Query: 246 TDAR-DVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVS 284
                D   W++++ G    GD +   K+  ++ + NP S
Sbjct: 600 MPFEADCSMWSSVLRGCVAHGDKDLGKKVAQQIIQLNPES 639


>gi|225442904|ref|XP_002264123.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15930 [Vitis vinifera]
          Length = 724

 Score =  327 bits (838), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 170/577 (29%), Positives = 313/577 (54%), Gaps = 34/577 (5%)

Query: 16  PNNCLIQSFLSLISK-GQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRV 74
           PN+ +  + +   S+ G  + A+S    + +RG+     T  F+L++     ++K G+ +
Sbjct: 82  PNHFVWNNMIKGYSRVGCPNSAVSMYCEMLERGVMPDEYTYPFLLKRFTRDTAVKCGREL 141

Query: 75  HLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGM 134
           H                +H++ + F                  N+F  N ++  Y+  G 
Sbjct: 142 H----------------DHIVKLGFS----------------SNVFVQNALIHLYSLSGE 169

Query: 135 MKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTI 194
           +  AR +FD  ++ DVV+WN MI GY +S   +E +K +  + R  +  +  +   +L+ 
Sbjct: 170 VSVARGVFDRSSKGDVVTWNVMISGYNRSKQFDESMKLFDEMERMRVLPSSITLVSVLSA 229

Query: 195 CVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTW 254
           C KL++L + ++VH  V         V+ ++++D YA CG++  A  +FD   +RDV++W
Sbjct: 230 CSKLKDLNVGKRVHRYVKDLKIEPVRVLENALIDMYAACGDMDTALGIFDNMKSRDVISW 289

Query: 255 TTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIR 314
           T +V+G+  LG +  A   F++MPE++ VSWT +I GY +    ++ L LF  M    I+
Sbjct: 290 TAIVTGFTNLGQVGLARNYFDKMPERDFVSWTAMIDGYLQVNRFKEVLSLFREMQAANIK 349

Query: 315 PNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQV 374
           P++ T  S L ACA + +L+ G+ +  ++ +   + ++ V ++LIDMY  CG +    ++
Sbjct: 350 PDEFTMVSILTACAHLGALELGEWIKAYIDKNEIKIDSFVGNALIDMYFNCGNVEKAIRI 409

Query: 375 FDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGL 434
           F+   +++  + W  +I  L  +GY E+A+ +F  M+++S+ PD++T   +L ACTHSG+
Sbjct: 410 FNAMPHRDK-ISWTAVIFGLAINGYGEEALDMFSQMLKASITPDEVTCIGVLCACTHSGM 468

Query: 435 VQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALH 494
           V +G  +F  MT   GI PN  H+ C+++LL +AG   +    ++ MP + +S +W +L 
Sbjct: 469 VDKGKKFFARMTTQHGIEPNVAHYGCMVDLLGRAGHLKEAHEVIKNMPVKPNSIVWGSLL 528

Query: 495 GVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKK 554
           G CR+H + +M      Q+++  P++ A + LL +IY+A  +   + +VR+L+ +R  KK
Sbjct: 529 GACRVHRDEEMAEMAAQQILELEPENGAVYVLLCNIYAACNRWEKLHEVRKLMMDRGIKK 588

Query: 555 EQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLA 591
               S IE+   VH F   D +HP    +YS L++++
Sbjct: 589 TPGCSLIEMNGSVHEFVAGDQVHPQSKEIYSKLDEMS 625



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 100/392 (25%), Positives = 175/392 (44%), Gaps = 63/392 (16%)

Query: 132 LGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGI 191
           LG M++AR +FD M   +   WN MI GY++ G     +  Y  +    +  +E+++  +
Sbjct: 66  LGDMEYARMVFDTMPGPNHFVWNNMIKGYSRVGCPNSAVSMYCEMLERGVMPDEYTYPFL 125

Query: 192 LTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDV 251
           L    +   +K  R++H  ++  GF SNV + ++++  Y+  GE+S AR +FD +   DV
Sbjct: 126 LKRFTRDTAVKCGRELHDHIVKLGFSSNVFVQNALIHLYSLSGEVSVARGVFDRSSKGDV 185

Query: 252 LTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMIL 311
           +TW  M+SGY +       SK F+E                        +++LF  M  +
Sbjct: 186 VTWNVMISGYNR-------SKQFDE------------------------SMKLFDEMERM 214

Query: 312 RIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDG 371
           R+ P+  T  S L AC+ +  L  GK+VH ++         ++ ++LIDMY+ CG ++  
Sbjct: 215 RVLPSSITLVSVLSACSKLKDLNVGKRVHRYVKDLKIEPVRVLENALIDMYAACGDMDTA 274

Query: 372 RQVFD------------------------LTDNKENSML------WNTMISALTQHGYDE 401
             +FD                        L  N  + M       W  MI    Q    +
Sbjct: 275 LGIFDNMKSRDVISWTAIVTGFTNLGQVGLARNYFDKMPERDFVSWTAMIDGYLQVNRFK 334

Query: 402 QAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACL 461
           + + LF +M  +++KPD+ T+  IL AC H G ++ G  + ++      I  +      L
Sbjct: 335 EVLSLFREMQAANIKPDEFTMVSILTACAHLGALELG-EWIKAYIDKNEIKIDSFVGNAL 393

Query: 462 IELLAQAGCSDQLMNQLEKMPYEHDSYLWNAL 493
           I++    G  ++ +     MP+  D   W A+
Sbjct: 394 IDMYFNCGNVEKAIRIFNAMPHR-DKISWTAV 424



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 84/327 (25%), Positives = 150/327 (45%), Gaps = 35/327 (10%)

Query: 191 ILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARD 250
           ++  C  + +LK   Q+H Q + TG +SN ++ + I+    K                  
Sbjct: 25  LIKTCKSMAQLK---QIHSQTICTGLISNPIVPAQIIAFCCK------------------ 63

Query: 251 VLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMI 310
                       +LGDME A  +F+ MP  N   W  +I GY+R G    A+ ++  M+ 
Sbjct: 64  -----------HELGDMEYARMVFDTMPGPNHFVWNNMIKGYSRVGCPNSAVSMYCEMLE 112

Query: 311 LRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLND 370
             + P+++T+   L       ++K G+++H  +++  F SN  V ++LI +YS  G ++ 
Sbjct: 113 RGVMPDEYTYPFLLKRFTRDTAVKCGRELHDHIVKLGFSSNVFVQNALIHLYSLSGEVSV 172

Query: 371 GRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACT 430
            R VFD + +K + + WN MIS   +    +++++LF +M R  V P  ITL  +L+AC+
Sbjct: 173 ARGVFDRS-SKGDVVTWNVMISGYNRSKQFDESMKLFDEMERMRVLPSSITLVSVLSACS 231

Query: 431 HSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLW 490
               +  G         DL I P +     LI++ A  G  D  +   + M    D   W
Sbjct: 232 KLKDLNVG-KRVHRYVKDLKIEPVRVLENALIDMYAACGDMDTALGIFDNMK-SRDVISW 289

Query: 491 NALHGVCRIHGNIDMGRKVVDQLIDQN 517
            A+       G + + R   D++ +++
Sbjct: 290 TAIVTGFTNLGQVGLARNYFDKMPERD 316


>gi|147805537|emb|CAN74095.1| hypothetical protein VITISV_023708 [Vitis vinifera]
          Length = 906

 Score =  327 bits (838), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 188/605 (31%), Positives = 319/605 (52%), Gaps = 80/605 (13%)

Query: 35  EAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHL-KLTQRKTPTTFLSNH 93
           EA+     +   GI+    +L+ ++  C   +    GK +H +L KL     P  F +N 
Sbjct: 241 EAVGLFYEMVLSGIKPNEFSLSSMVNACTGLRDSSRGKIIHGYLIKLGYDWDP--FSANA 298

Query: 94  LISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSG------------------------- 128
           L+ MY K G   DA  VF+KI   ++ S+N +++G                         
Sbjct: 299 LVDMYAKVGDLADAISVFEKIKQPDIVSWNAVIAGCVLHEHHEQALELLGQMKRQLHSSL 358

Query: 129 ------------------YANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGL 170
                             Y+   +++ AR  F+ + E+D+++WN +I GY++     E L
Sbjct: 359 MKMDMESDLFVSVGLVDMYSKCDLLEDARMAFNLLPEKDLIAWNAIISGYSQYWEDMEAL 418

Query: 171 KFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAY 230
             +  + +  I  N+ + + IL     L+ + + RQVHG  + +GF S++ + +S++D+Y
Sbjct: 419 SLFVEMHKEGIGFNQTTLSTILKSTAGLQVVHVCRQVHGLSVKSGFHSDIYVVNSLIDSY 478

Query: 231 AKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIA 290
            KC  +                               E A ++F E    + VS+T++I 
Sbjct: 479 GKCSHV-------------------------------EDAERIFEECTIGDLVSFTSMIT 507

Query: 291 GYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRS 350
            Y + G G++AL+LF  M  + ++P++   SS L ACA++ + + GKQ+H  +++  F  
Sbjct: 508 AYAQYGQGEEALKLFLEMQDMELKPDRFVCSSLLNACANLSAFEQGKQLHVHILKYGFVL 567

Query: 351 NTIVMSSLIDMYSKCGCLND-GRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHD 409
           +    +SL++MY+KCG ++D GR   +LT+    S  W+ MI  L QHG+  QA++LF+ 
Sbjct: 568 DIFAGNSLVNMYAKCGSIDDAGRAFSELTERGIVS--WSAMIGGLAQHGHGRQALQLFNQ 625

Query: 410 MVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAG 469
           M++  V P+ ITL  +L AC H+GLV E   YFESM    G  P QEH+AC+I+LL +AG
Sbjct: 626 MLKEGVSPNHITLVSVLGACNHAGLVTEAKLYFESMEELFGFKPMQEHYACMIDLLGRAG 685

Query: 470 CSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSS 529
             ++ +  + KMP+E ++ +W AL G  RIH ++++GR+  + L    P+ S TH LL++
Sbjct: 686 KINEAVELVNKMPFEANASVWGALLGAARIHKDVELGRRAAEMLFILEPEKSGTHVLLAN 745

Query: 530 IYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQ 589
           IY++ GK   V +VR+L+ + + KKE  +SWIE+++KV+ F V D  H     +Y+ L++
Sbjct: 746 IYASAGKWENVAEVRRLMRDSKVKKEPGMSWIEVKDKVYTFLVGDRSHYRSQEIYAKLDE 805

Query: 590 LAGQM 594
           L+  M
Sbjct: 806 LSDLM 810



 Score =  186 bits (471), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 134/541 (24%), Positives = 247/541 (45%), Gaps = 80/541 (14%)

Query: 47  GIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVD 106
           G++    T + +L+ C+  K L++GK+VH  + +        F++N L+ MY KC   +D
Sbjct: 152 GVKCNEFTFSSVLKACSIVKDLRIGKQVH-GVVVVSGFEGDVFVANTLVVMYAKCDEFLD 210

Query: 107 ARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAV 166
           ++++FD+IP +N+ S+N + S Y        A  LF  M                    V
Sbjct: 211 SKRLFDEIPERNVVSWNALFSCYVQXDFCGEAVGLFYEM--------------------V 250

Query: 167 EEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSI 226
             G+K            NEFS + ++  C  L +    + +HG ++  G+  +   ++++
Sbjct: 251 LSGIK-----------PNEFSLSSMVNACTGLRDSSRGKIIHGYLIKLGYDWDPFSANAL 299

Query: 227 VDAYAKCGELSDARRLFDETDARDVLTWTTMVSG-------------------------- 260
           VD YAK G+L+DA  +F++    D+++W  +++G                          
Sbjct: 300 VDMYAKVGDLADAISVFEKIKQPDIVSWNAVIAGCVLHEHHEQALELLGQMKRQLHSSLM 359

Query: 261 -----------------YAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALE 303
                            Y+K   +E A   FN +PEK+ ++W  +I+GY++     +AL 
Sbjct: 360 KMDMESDLFVSVGLVDMYSKCDLLEDARMAFNLLPEKDLIAWNAIISGYSQYWEDMEALS 419

Query: 304 LFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYS 363
           LF  M    I  NQ T S+ L + A +  +   +QVHG  +++ F S+  V++SLID Y 
Sbjct: 420 LFVEMHKEGIGFNQTTLSTILKSTAGLQVVHVCRQVHGLSVKSGFHSDIYVVNSLIDSYG 479

Query: 364 KCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLA 423
           KC  + D  ++F+      + + + +MI+A  Q+G  E+A++LF +M    +KPD+   +
Sbjct: 480 KCSHVEDAERIFEEC-TIGDLVSFTSMITAYAQYGQGEEALKLFLEMQDMELKPDRFVCS 538

Query: 424 VILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPY 483
            +LNAC +    ++G      +    G + +      L+ + A+ G  D       ++  
Sbjct: 539 SLLNACANLSAFEQGKQLHVHIL-KYGFVLDIFAGNSLVNMYAKCGSIDDAGRAFSELT- 596

Query: 484 EHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKV 543
           E     W+A+ G    HG+     ++ +Q++ +    S  H  L S+  A     LV + 
Sbjct: 597 ERGIVSWSAMIGGLAQHGHGRQALQLFNQMLKEG--VSPNHITLVSVLGACNHAGLVTEA 654

Query: 544 R 544
           +
Sbjct: 655 K 655



 Score =  177 bits (448), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 106/356 (29%), Positives = 175/356 (49%), Gaps = 66/356 (18%)

Query: 58  ILQQCAESKSLKLGKRVHLHL-KLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPV 116
           +L QC  +KSL+ G ++H H+ K      P+  + NHLI++Y KC               
Sbjct: 62  LLSQCCTTKSLRPGLQIHAHITKSGLSDDPS--IRNHLINLYSKC--------------- 104

Query: 117 KNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVL 176
              F Y               AR L D  +E D+VSW+ +I GYA++G     L  +  +
Sbjct: 105 -RXFGY---------------ARKLVDESSEPDLVSWSALISGYAQNGLGGGALMAFHEM 148

Query: 177 RRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGEL 236
               + CNEF+F+ +L  C  +++L++ +QVHG V+V+GF  +V +++++V  YAKC E 
Sbjct: 149 HLLGVKCNEFTFSSVLKACSIVKDLRIGKQVHGVVVVSGFEGDVFVANTLVVMYAKCDEF 208

Query: 237 SDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNG 296
            D++RLFDE   R+V++W  + S                                Y +  
Sbjct: 209 LDSKRLFDEIPERNVVSWNALFS-------------------------------CYVQXD 237

Query: 297 LGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMS 356
              +A+ LF  M++  I+PN+ + SS + AC  +     GK +HG+LI+  +  +    +
Sbjct: 238 FCGEAVGLFYEMVLSGIKPNEFSLSSMVNACTGLRDSSRGKIIHGYLIKLGYDWDPFSAN 297

Query: 357 SLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVR 412
           +L+DMY+K G L D   VF+    + + + WN +I+    H + EQA+ L   M R
Sbjct: 298 ALVDMYAKVGDLADAISVFEKI-KQPDIVSWNAVIAGCVLHEHHEQALELLGQMKR 352



 Score =  149 bits (377), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 103/385 (26%), Positives = 185/385 (48%), Gaps = 52/385 (13%)

Query: 187 SFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDET 246
           S++ +L+ C   + L+   Q+H  +  +G   +  I + +++ Y+KC     AR+L DE+
Sbjct: 58  SYSKLLSQCCTTKSLRPGLQIHAHITKSGLSDDPSIRNHLINLYSKCRXFGYARKLVDES 117

Query: 247 DARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFT 306
                                           E + VSW+ LI+GY +NGLG  AL  F 
Sbjct: 118 S-------------------------------EPDLVSWSALISGYAQNGLGGGALMAFH 146

Query: 307 RMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCG 366
            M +L ++ N+ TFSS L AC+ +  L+ GKQVHG ++ + F  +  V ++L+ MY+KC 
Sbjct: 147 EMHLLGVKCNEFTFSSVLKACSIVKDLRIGKQVHGVVVVSGFEGDVFVANTLVVMYAKCD 206

Query: 367 CLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVIL 426
              D +++FD    + N + WN + S   Q  +  +A+ LF++MV S +KP++ +L+ ++
Sbjct: 207 EFLDSKRLFDEIPER-NVVSWNALFSCYVQXDFCGEAVGLFYEMVLSGIKPNEFSLSSMV 265

Query: 427 NACT-----HSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKM 481
           NACT       G +  G  Y   + +D            L+++ A+ G     ++  EK+
Sbjct: 266 NACTGLRDSSRGKIIHG--YLIKLGYDWDPFSAN----ALVDMYAKVGDLADAISVFEKI 319

Query: 482 PYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALG------ 535
             + D   WNA+   C +H + +   +++ Q+  Q   S     + S ++ ++G      
Sbjct: 320 K-QPDIVSWNAVIAGCVLHEHHEQALELLGQMKRQLHSSLMKMDMESDLFVSVGLVDMYS 378

Query: 536 KGRLVEKVRQLINERQFKKEQAISW 560
           K  L+E  R   N     ++  I+W
Sbjct: 379 KCDLLEDARMAFN--LLPEKDLIAW 401



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 32/116 (27%), Positives = 61/116 (52%), Gaps = 1/116 (0%)

Query: 315 PNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQV 374
           P   ++S  L  C +  SL+ G Q+H  + ++    +  + + LI++YSKC      R++
Sbjct: 54  PTSVSYSKLLSQCCTTKSLRPGLQIHAHITKSGLSDDPSIRNHLINLYSKCRXFGYARKL 113

Query: 375 FDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACT 430
            D   ++ + + W+ +IS   Q+G    A+  FH+M    VK ++ T + +L AC+
Sbjct: 114 VD-ESSEPDLVSWSALISGYAQNGLGGGALMAFHEMHLLGVKCNEFTFSSVLKACS 168


>gi|224124638|ref|XP_002330073.1| predicted protein [Populus trichocarpa]
 gi|222871498|gb|EEF08629.1| predicted protein [Populus trichocarpa]
          Length = 793

 Score =  327 bits (837), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 188/629 (29%), Positives = 327/629 (51%), Gaps = 41/629 (6%)

Query: 16  PNNCLIQSFL-SLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRV 74
           PN  +  + +   + +    +AI     + +  +     T   + Q C+   +   GK +
Sbjct: 89  PNGFICNTMMKGYMQRNSPCKAIWVYKFMLESNVAADNYTYPILFQSCSIRLAEFDGKCI 148

Query: 75  HLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGM 134
             H+ L        ++ N LI+MY  CG+  DARKVFD   V ++ S+N+ML+GY  +G 
Sbjct: 149 QDHV-LKVGFDSDVYIQNTLINMYAVCGNLSDARKVFDGSSVLDMVSWNSMLAGYVLVGN 207

Query: 135 MKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFS-------ISC---- 183
           ++ A++++D M ER+V++ N+MI+ + K G VEE  K +  +++         ISC    
Sbjct: 208 VEEAKDVYDRMPERNVIASNSMIVLFGKKGNVEEACKLFNEMKQKDLVSWSALISCYEQN 267

Query: 184 --------------------NEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVIS 223
                               +E     +L+ C +L  +   + VHG V+  G  + V + 
Sbjct: 268 EMYEEALILFKEMNANGIMVDEVVVLSVLSACSRLLVVITGKLVHGLVVKVGIETYVNLQ 327

Query: 224 SSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPV 283
           ++++  Y+ C E+  A++LF E+   D ++W +M+SGY K G++E A  LF+ MP+K+ V
Sbjct: 328 NALIHMYSSCEEVVTAQKLFSESCCLDQISWNSMISGYVKCGEIEKARALFDSMPDKDNV 387

Query: 284 SWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFL 343
           SW+ +I+GY +     + L LF  M I   +P++    S + AC  + +L  GK +H ++
Sbjct: 388 SWSAMISGYAQQDRFTETLVLFQEMQIEGTKPDETILVSVISACTHLAALDQGKWIHAYI 447

Query: 344 IRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQA 403
            +   + N I+ ++LI+MY K GC+ D  +VF   + K  S  WN +I  L  +G  +++
Sbjct: 448 RKNGLKINIILGTTLINMYMKLGCVEDALEVFKGLEEKGVST-WNALILGLAMNGLVDKS 506

Query: 404 IRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIE 463
           ++ F +M    V P++IT   +L AC H GLV EG  +F SM  +  I PN +H+ C+++
Sbjct: 507 LKTFSEMKEHGVTPNEITFVAVLGACRHMGLVDEGHRHFNSMIQEHKIGPNIKHYGCMVD 566

Query: 464 LLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSAT 523
           LL +AG   +    +E MP   D   W AL G C+ +G+ + G ++  +L++ +P     
Sbjct: 567 LLGRAGMLKEAEELIESMPMAPDVSTWGALLGACKKYGDNETGERIGRKLVELHPDHDGF 626

Query: 524 HGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVL 583
           + LLS+IY++ G    V +VR ++ +    K    S IE   +VH F   D  HP  + +
Sbjct: 627 NVLLSNIYASKGNWVDVLEVRGMMRQHGVVKTPGCSMIEAHGRVHEFLAGDKTHPQNEHI 686

Query: 584 YSVLEQLAGQMGED--AP-----SLDADR 605
             +L+++A ++  +  AP     SLD D 
Sbjct: 687 EHMLDEMAKKLKLEGYAPDTREVSLDIDE 715


>gi|395146511|gb|AFN53666.1| hypothetical protein [Linum usitatissimum]
          Length = 850

 Score =  327 bits (837), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 172/543 (31%), Positives = 292/543 (53%), Gaps = 33/543 (6%)

Query: 54  TLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDK 113
           T   +++  AE +   +GK VH  + +        F+ N LI  Y  CG    A  VF+ 
Sbjct: 242 TFPVLIKAVAERRCFLVGKAVH-GMAIKTSFGDDVFVLNSLIHFYASCGHLDLAYLVFEM 300

Query: 114 IPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFY 173
           I   N                             +D+VSWN+M+ G+ + G  ++ L  +
Sbjct: 301 IEGNN-----------------------------KDIVSWNSMVTGFVQGGYPDKALDLF 331

Query: 174 KVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKC 233
           + +R   +  N  +   +++ C K   L L R+V   +     + N+ + ++ +D + KC
Sbjct: 332 ERMRNEGVHPNAVTMVSVMSACAKTMNLTLGRKVCDYIDRNEMMMNLNVCNATIDMFVKC 391

Query: 234 GELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYT 293
           GE+  AR LFD  + RDV++WTT++ GYAK+ +   A  +F+ MP K+  +W  LI+GY 
Sbjct: 392 GEVEIARGLFDNMEKRDVVSWTTIIDGYAKMSEHGIARDIFDSMPRKDIPAWNVLISGYE 451

Query: 294 RNGLGQKALELFTRMMILR--IRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSN 351
           ++G  ++AL +F  + + +   RP+Q T  S L ACA + ++  G+ +HG++ +   + N
Sbjct: 452 QSGRPKEALAIFRELQLTKSGARPDQVTLLSTLSACAQLGAMDIGEWIHGYIKKERIQLN 511

Query: 352 TIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMV 411
             + +SLIDMYSK G +    +VF    NK+   +W+ MI+ L  HG  E AI LF DM 
Sbjct: 512 RNLATSLIDMYSKSGDVEKAIEVFHSIGNKD-VFVWSAMIAGLAMHGRGEAAIELFLDMQ 570

Query: 412 RSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCS 471
            + VKP+ +T   +L AC+HSGLV EG   F+ M    G++P  +H++C++++L +AG  
Sbjct: 571 ETQVKPNSVTFTNLLCACSHSGLVDEGKRLFDEMERVYGVVPKTKHYSCMVDVLGRAGHL 630

Query: 472 DQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIY 531
           ++ +  +E MP    + +W AL G C IHGN+++  K   +L++  P +   + LLS++Y
Sbjct: 631 EEALKFIEGMPLAPSASVWGALLGACCIHGNLELAEKACSRLLEIEPGNHGAYVLLSNLY 690

Query: 532 SALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLA 591
           +  G    V ++RQ + +   KKE   S IEI+  VH F V D+ HP+   +Y+ L+++ 
Sbjct: 691 AKTGDWEGVSELRQQMRDSGLKKETGCSSIEIDGTVHEFIVGDNAHPLSRDIYAKLDEIM 750

Query: 592 GQM 594
            ++
Sbjct: 751 ARL 753



 Score =  139 bits (350), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 109/479 (22%), Positives = 210/479 (43%), Gaps = 76/479 (15%)

Query: 109 KVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSG-AVE 167
           K+ D      LF+     + +++   + +AR +FD + + ++ SWN +I   A S   ++
Sbjct: 167 KLHDPYAASELFT----AAAFSSFSALDYARKVFDQIPQPNLYSWNILIRALATSSDPIQ 222

Query: 168 EGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIV 227
             L F ++L       N+F+F  ++    +     + + VHG  + T F  +V + +S++
Sbjct: 223 SVLVFIRMLHDSPFGPNKFTFPVLIKAVAERRCFLVGKAVHGMAIKTSFGDDVFVLNSLI 282

Query: 228 DAYAKCGELSDARRLFD--ETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSW 285
             YA CG L  A  +F+  E + +D+++W +MV+G+ +                      
Sbjct: 283 HFYASCGHLDLAYLVFEMIEGNNKDIVSWNSMVTGFVQ---------------------- 320

Query: 286 TTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIR 345
                     G   KAL+LF RM    + PN  T  S + ACA  ++L  G++V  ++ R
Sbjct: 321 ---------GGYPDKALDLFERMRNEGVHPNAVTMVSVMSACAKTMNLTLGRKVCDYIDR 371

Query: 346 TNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKE----------------------- 382
                N  V ++ IDM+ KCG +   R +FD  + ++                       
Sbjct: 372 NEMMMNLNVCNATIDMFVKCGEVEIARGLFDNMEKRDVVSWTTIIDGYAKMSEHGIARDI 431

Query: 383 -NSM------LWNTMISALTQHGYDEQAIRLFHD--MVRSSVKPDKITLAVILNACTHSG 433
            +SM       WN +IS   Q G  ++A+ +F +  + +S  +PD++TL   L+AC   G
Sbjct: 432 FDSMPRKDIPAWNVLISGYEQSGRPKEALAIFRELQLTKSGARPDQVTLLSTLSACAQLG 491

Query: 434 LVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNAL 493
            +  G  +         I  N+     LI++ +++G  ++ +     +    D ++W+A+
Sbjct: 492 AMDIG-EWIHGYIKKERIQLNRNLATSLIDMYSKSGDVEKAIEVFHSIG-NKDVFVWSAM 549

Query: 494 HGVCRIHGNIDMGRKVVDQLID-QNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQ 551
                +HG    G   ++  +D Q  Q        +++  A     LV++ ++L +E +
Sbjct: 550 IAGLAMHGR---GEAAIELFLDMQETQVKPNSVTFTNLLCACSHSGLVDEGKRLFDEME 605



 Score =  138 bits (348), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 93/401 (23%), Positives = 186/401 (46%), Gaps = 44/401 (10%)

Query: 9   GINRKNLPNNCLIQSFLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSL 68
           G N+  +  N ++  F   +  G   +A+   + +   G+   A T+  ++  CA++ +L
Sbjct: 303 GNNKDIVSWNSMVTGF---VQGGYPDKALDLFERMRNEGVHPNAVTMVSVMSACAKTMNL 359

Query: 69  KLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSG 128
            LG++V  ++   +       + N  I M+ KCG    AR +FD +  +++ S+  ++ G
Sbjct: 360 TLGRKVCDYIDRNEMMMNLN-VCNATIDMFVKCGEVEIARGLFDNMEKRDVVSWTTIIDG 418

Query: 129 YANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLR--RFSISCNEF 186
           YA +     AR++FD+M  +D+ +WN +I GY +SG  +E L  ++ L+  +     ++ 
Sbjct: 419 YAKMSEHGIARDIFDSMPRKDIPAWNVLISGYEQSGRPKEALAIFRELQLTKSGARPDQV 478

Query: 187 SFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDET 246
           +    L+ C +L  + +   +HG +       N  +++S++D Y+K G++  A  +F   
Sbjct: 479 TLLSTLSACAQLGAMDIGEWIHGYIKKERIQLNRNLATSLIDMYSKSGDVEKAIEVFHSI 538

Query: 247 DARDVLTWTTMVSGYAKLGDMESASKLFNEMPE----KNPVSWTTLIAGYTRNGLGQKAL 302
             +DV  W+ M++G A  G  E+A +LF +M E     N V++T L+   + +GL  +  
Sbjct: 539 GNKDVFVWSAMIAGLAMHGRGEAAIELFLDMQETQVKPNSVTFTNLLCACSHSGLVDEGK 598

Query: 303 ELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMY 362
            LF  M                            ++V+G + +T         S ++D+ 
Sbjct: 599 RLFDEM----------------------------ERVYGVVPKTKH------YSCMVDVL 624

Query: 363 SKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQA 403
            + G L +  +  +      ++ +W  ++ A   HG  E A
Sbjct: 625 GRAGHLEEALKFIEGMPLAPSASVWGALLGACCIHGNLELA 665



 Score = 47.0 bits (110), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 66/273 (24%), Positives = 106/273 (38%), Gaps = 49/273 (17%)

Query: 332 SLKHGKQVHGFLIRTNFRSNTIVMSSLID--MYSKCGCLNDGRQVFDLTDNKENSMLWNT 389
           S K  KQ+H  ++RTN   +    S L     +S    L+  R+VFD    + N   WN 
Sbjct: 151 SFKQLKQIHAQMLRTNKLHDPYAASELFTAAAFSSFSALDYARKVFDQIP-QPNLYSWNI 209

Query: 390 MISALTQHGYDEQA----IRLFHDMVRSSVKPDKITLAVILNA-----CTHSGLVQEGLT 440
           +I AL       Q+    IR+ HD   S   P+K T  V++ A     C   G    G+ 
Sbjct: 210 LIRALATSSDPIQSVLVFIRMLHD---SPFGPNKFTFPVLIKAVAERRCFLVGKAVHGMA 266

Query: 441 YFESMTHDLGIIPNQEHH--AC-------------------------LIELLAQAGCSDQ 473
              S   D+ ++ +  H   +C                         ++    Q G  D+
Sbjct: 267 IKTSFGDDVFVLNSLIHFYASCGHLDLAYLVFEMIEGNNKDIVSWNSMVTGFVQGGYPDK 326

Query: 474 LMNQLEKMPYE---HDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSI 530
            ++  E+M  E    ++    ++   C    N+ +GRKV D  ID+N      +   ++I
Sbjct: 327 ALDLFERMRNEGVHPNAVTMVSVMSACAKTMNLTLGRKVCD-YIDRNEMMMNLNVCNATI 385

Query: 531 YSALGKGRLVEKVRQLINERQFKKEQAISWIEI 563
              +  G  VE  R L +    +K   +SW  I
Sbjct: 386 DMFVKCGE-VEIARGLFD--NMEKRDVVSWTTI 415


>gi|326526103|dbj|BAJ93228.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 623

 Score =  327 bits (837), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 193/598 (32%), Positives = 320/598 (53%), Gaps = 28/598 (4%)

Query: 5   FSPRGINRKNLPNNCLIQSFLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAE 64
           FS    +    PN  + +    L + G++ +A    D    R +      +++     A 
Sbjct: 31  FSTDAFSHVQDPNRRIAE----LAAAGRVPDARRLFDRTPDRDV------VSWTAMVAAY 80

Query: 65  SKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNN 124
           ++  +L +   L  +   R+   T+ +  L+S Y +     +AR +FD++P +N+ S+N 
Sbjct: 81  ARQGQLHEASALLHRPDARRNVVTWTA--LLSGYARARRVDEARALFDRMPERNVVSWNT 138

Query: 125 MLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCN 184
           ML  YA+ G M  A  LFD M  RD  SWN ++    +SG ++E  + ++ +   ++   
Sbjct: 139 MLEAYASAGRMGAACALFDGMPVRDAGSWNILLAALVRSGTMDEARRLFERMPERNVMSW 198

Query: 185 EFSFAGILTICVKLEELKLTRQVHGQVLVTGFLS-NVVISSSIVDAYAKCGELSDARRLF 243
               +G+       E          + L  G    NVV  ++++  YA+   + +A  LF
Sbjct: 199 TTMISGLARSGSADE---------ARALFDGMPERNVVSWNAMISGYARNLRIDEALDLF 249

Query: 244 DETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALE 303
                RDV +W  M++G+ +  D++ A +LF+EMP++N VSWTT++ G  +    + AL+
Sbjct: 250 MNMPERDVASWNIMITGFIQNKDLKKAQELFDEMPKRNVVSWTTMMNGCLQGNESEMALQ 309

Query: 304 LFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYS 363
           +F  M++  IRPNQ TF   + A +++  L  G+QVH  + +T F+ +  + SSL+ +Y+
Sbjct: 310 VFNGMLVDGIRPNQVTFLGAVDAGSNLAGLSEGQQVHQMICKTPFQFDNFIESSLMKLYA 369

Query: 364 KCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLA 423
           KCG +   R+VFDL+  K+  + WN MI+A   HG   +AI L+  M  +  KP+ +T  
Sbjct: 370 KCGEIRLARKVFDLSGEKD-VISWNGMIAAYAHHGAGVEAIALYEKMQENRYKPNDVTYV 428

Query: 424 VILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSD---QLMNQLEK 480
            +L+AC+HSGLV EGL  FE M  D  I    EH++CLI+L ++AG  D   +L+N L+ 
Sbjct: 429 GLLSACSHSGLVDEGLRIFEYMAKDKSIAVRDEHYSCLIDLCSRAGRLDDAKRLINGLKL 488

Query: 481 MPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLV 540
            P    S +W+AL G C  HGN  +G      L++  P ++ T+ LLS+IY++ GK +  
Sbjct: 489 KPTS--STVWSALLGGCNAHGNESIGDLAARNLLEAEPDNAGTYTLLSNIYASAGKWKEA 546

Query: 541 EKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQMGEDA 598
            K+R  +N+R  KK+   SWIE+ NKVH F   D  H   +++YS+L+ +   M  D 
Sbjct: 547 AKIRSEMNDRGLKKQPGCSWIELANKVHVFVARDKSHSESELIYSLLQDIHHMMRMDG 604


>gi|359480506|ref|XP_003632478.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Vitis vinifera]
          Length = 590

 Score =  326 bits (836), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 167/525 (31%), Positives = 296/525 (56%), Gaps = 40/525 (7%)

Query: 85  TPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDN 144
           T   +  N  I    + G+   AR++FD++P ++  S+N++++GY   G    ++ LF  
Sbjct: 44  TQDVYAFNVQIGNLARAGNIGAARQLFDEMPHRDTVSWNSIITGYWKNGCFDESKRLFGL 103

Query: 145 MAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLT 204
           M  ++VVSWN+MI G  +   ++E  ++++ + +     N  S+  +++  V+ + ++  
Sbjct: 104 MPTKNVVSWNSMIAGCIEDERIDEAWQYFQAMPQR----NTASWNAMISGLVRYDRVEEA 159

Query: 205 RQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKL 264
            ++  ++       NV+  +++VD YAK GE+  AR LF+    ++V++WT M+SGY + 
Sbjct: 160 SRLFEEMP----RRNVISYTAMVDGYAKIGEIEQARALFNCMPQKNVVSWTVMISGYVEN 215

Query: 265 GDMESASKLFNEMPEKNPV-------------------------------SWTTLIAGYT 293
           G  + A  LF +MP+KN V                               SW  +I GY 
Sbjct: 216 GKFDEAENLFEQMPDKNIVAMTAMITGYCKEGKTDKAKILFDQIPCRDLASWNAMITGYA 275

Query: 294 RNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTI 353
           +NG G++AL+L ++M+ + ++P+  T  S L AC+S+ SL+ G++ H  ++++ + S   
Sbjct: 276 QNGSGEEALKLHSQMLKMGMQPDHSTLISVLTACSSLASLQEGRKTHVLVLKSGYESRIS 335

Query: 354 VMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRS 413
           + ++LI MY KCG + D    F   D+ +  + WN MI+A  +HG+ ++A+  F +M  +
Sbjct: 336 ICNALITMYCKCGSILDSELAFRQIDHPD-VVSWNAMIAAFARHGFYDRALASFGEMRSN 394

Query: 414 SVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQ 473
            V+PD IT   +L+AC H+G V E L +F SM     I+P  EH ACL+++L++ G  ++
Sbjct: 395 RVEPDGITFLSLLSACGHAGKVHESLNWFNSMIESYKIVPRPEHFACLVDILSRGGQVEK 454

Query: 474 LMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSA 533
               +++MP+E D  +W AL   C +H N+ +G     ++++  PQ+S  + +LS+IY+A
Sbjct: 455 AYKIIQEMPFEADCGIWGALLAACHVHLNVKLGELAAKKIVELEPQNSGAYVVLSNIYAA 514

Query: 534 LGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHP 578
            G    V +VR L+ E+  KK+ A SW+EI+NKVH F   D+ HP
Sbjct: 515 AGMWGEVTRVRGLMREQGVKKQPAYSWMEIDNKVHFFLGDDASHP 559


>gi|297741948|emb|CBI33393.3| unnamed protein product [Vitis vinifera]
          Length = 752

 Score =  326 bits (836), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 166/503 (33%), Positives = 283/503 (56%), Gaps = 41/503 (8%)

Query: 92  NHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVV 151
           N +++ Y K     +AR++FD +P K+L S+N+ML+GY   G M+     F+ MAERDVV
Sbjct: 31  NAMVAGYAKNRQFDEARRLFDAMPAKDLVSWNSMLTGYTRNGEMRLGLQFFEEMAERDVV 90

Query: 152 SWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQV 211
           SWN M+ G+ + G +    +F++ +                                   
Sbjct: 91  SWNLMVDGFVEVGDLNSSWEFFEKIPN--------------------------------- 117

Query: 212 LVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESAS 271
                  N V   +++  +A+ G++++ARRLFD+   R+V+ W  M++ Y +   ++ A 
Sbjct: 118 ------PNTVSWVTMLCGFARFGKIAEARRLFDQMPIRNVVAWNAMIAAYVQNCHVDEAI 171

Query: 272 KLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIV 331
            LF EMPEKN +SWTT+I GY R G   +A +L  +M   R +P+Q TF+  L +CA + 
Sbjct: 172 SLFMEMPEKNSISWTTVINGYVRMGKLDEARQLLNQM-PYRNKPDQSTFACGLSSCAHLA 230

Query: 332 SLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMI 391
           +L+ GKQ+H  ++++ + ++  V ++LI MY+KCG ++    +F   D+ +  + WN++I
Sbjct: 231 ALQVGKQLHQLVMKSGYATDLFVSNALITMYAKCGSISSAELLFKDIDHFD-VVSWNSLI 289

Query: 392 SALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGI 451
           +A   +G   +A++LFH M    V PD++T   IL+AC+H GL+ +GL  F+ M     I
Sbjct: 290 AAYALNGNGREALKLFHKMEVEGVAPDEVTFVGILSACSHVGLIDQGLKLFKCMVQAYNI 349

Query: 452 IPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVD 511
            P  EH+AC+++LL +AG  ++    +  M    ++ +W AL G CRIHGN+++ +   +
Sbjct: 350 EPLAEHYACMVDLLGRAGRLEEAFQLVRGMKINANAGIWGALLGACRIHGNLELAKFAAE 409

Query: 512 QLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFS 571
           +L++  P  ++ + LLS++ +  G+   V +VR+L+ E+  +K+   SWIE++N+VHAF 
Sbjct: 410 KLLEFEPHKTSNYVLLSNMQAEAGRWDEVARVRRLMKEKGAEKQPGWSWIELQNRVHAFL 469

Query: 572 VSDSLHPMRDVLYSVLEQLAGQM 594
             D  HP    L  +L  L   M
Sbjct: 470 SEDPAHPRAVELCHILRSLTAHM 492



 Score =  135 bits (339), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 77/319 (24%), Positives = 160/319 (50%), Gaps = 33/319 (10%)

Query: 86  PTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNM 145
           P T     ++  + + G   +AR++FD++P++N+ ++N M++ Y     +  A +LF  M
Sbjct: 118 PNTVSWVTMLCGFARFGKIAEARRLFDQMPIRNVVAWNAMIAAYVQNCHVDEAISLFMEM 177

Query: 146 AERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTR 205
            E++ +SW T+I GY + G ++E  +    +  +    ++ +FA  L+ C  L  L++ +
Sbjct: 178 PEKNSISWTTVINGYVRMGKLDEARQLLNQM-PYRNKPDQSTFACGLSSCAHLAALQVGK 236

Query: 206 QVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLG 265
           Q+H  V+ +G+ +++ +S++++  YAKCG +S A  LF + D  DV++W ++++ YA  G
Sbjct: 237 QLHQLVMKSGYATDLFVSNALITMYAKCGSISSAELLFKDIDHFDVVSWNSLIAAYALNG 296

Query: 266 DMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLC 325
           +                               G++AL+LF +M +  + P++ TF   L 
Sbjct: 297 N-------------------------------GREALKLFHKMEVEGVAPDEVTFVGILS 325

Query: 326 ACASIVSLKHGKQVHGFLIRT-NFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENS 384
           AC+ +  +  G ++   +++  N        + ++D+  + G L +  Q+        N+
Sbjct: 326 ACSHVGLIDQGLKLFKCMVQAYNIEPLAEHYACMVDLLGRAGRLEEAFQLVRGMKINANA 385

Query: 385 MLWNTMISALTQHGYDEQA 403
            +W  ++ A   HG  E A
Sbjct: 386 GIWGALLGACRIHGNLELA 404



 Score = 66.2 bits (160), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 67/267 (25%), Positives = 117/267 (43%), Gaps = 41/267 (15%)

Query: 28  ISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPT 87
           +  G+L EA   L+ +  R  +    T A  L  CA   +L++GK++H  L +       
Sbjct: 193 VRMGKLDEARQLLNQMPYRN-KPDQSTFACGLSSCAHLAALQVGKQLH-QLVMKSGYATD 250

Query: 88  TFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAE 147
            F+SN LI+MY KCGS   A  +F  I   ++ S+N++++ YA  G  + A  LF  M  
Sbjct: 251 LFVSNALITMYAKCGSISSAELLFKDIDHFDVVSWNSLIAAYALNGNGREALKLFHKMEV 310

Query: 148 RDVVSWNTMIIGYAKS----GAVEEGLKFYK-VLRRFSISCNEFSFAGILTI---CVKLE 199
             V       +G   +    G +++GLK +K +++ ++I      +A ++ +     +LE
Sbjct: 311 EGVAPDEVTFVGILSACSHVGLIDQGLKLFKCMVQAYNIEPLAEHYACMVDLLGRAGRLE 370

Query: 200 E-LKLTR------------------QVHGQVLVTGF------------LSNVVISSSIVD 228
           E  +L R                  ++HG + +  F             SN V+ S++  
Sbjct: 371 EAFQLVRGMKINANAGIWGALLGACRIHGNLELAKFAAEKLLEFEPHKTSNYVLLSNMQA 430

Query: 229 AYAKCGELSDARRLFDETDARDVLTWT 255
              +  E++  RRL  E  A     W+
Sbjct: 431 EAGRWDEVARVRRLMKEKGAEKQPGWS 457


>gi|297839569|ref|XP_002887666.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297333507|gb|EFH63925.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 675

 Score =  326 bits (836), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 171/524 (32%), Positives = 305/524 (58%), Gaps = 3/524 (0%)

Query: 39  SLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMY 98
           +L L  +      A TL  +L+ CAE ++LK GK++H  + +   +  +  +++ L+++Y
Sbjct: 154 ALRLFKELKFSADAITLTTVLKACAELEALKRGKQIHAQILIGGVECDSK-MNSSLVNVY 212

Query: 99  FKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMII 158
            KCG    A  + ++I   +  S + ++SGYAN G +  +R LFD  + R V+ WN+MI 
Sbjct: 213 AKCGDLRMASYMLEQIGEPDDHSLSTLISGYANCGRVNESRRLFDRKSNRCVILWNSMIS 272

Query: 159 GYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLS 218
           GY  +    E L  +  +R  +   +  + A ++  C+ L  L+  +Q+H      G + 
Sbjct: 273 GYIANNMKFEALVLFNEMRNETWE-DSRTLAAVINACIGLGFLETGKQMHCHACKFGLVD 331

Query: 219 NVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMP 278
           ++V++S+++D Y+KCG   +A +LF E ++ D +   +M+  Y   G ++ A ++F  + 
Sbjct: 332 DIVVASTLLDMYSKCGSPMEACKLFSEVESYDTILLNSMIKVYFSCGRIDDAKRVFERIE 391

Query: 279 EKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQ 338
            K+ +SW ++  G+++NG   + LE F++M  L +  ++ + SS + ACASI SL  G+Q
Sbjct: 392 NKSLISWNSMTNGFSQNGCPVETLEYFSQMHKLDLPTDEVSLSSVISACASISSLGLGEQ 451

Query: 339 VHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHG 398
           V          S+ IV SSLID+Y KCG + +GR+VFD T  K + + WN+MIS    +G
Sbjct: 452 VFARATIVGLDSDQIVSSSLIDLYCKCGSVENGRRVFD-TMVKSDEVPWNSMISGYATNG 510

Query: 399 YDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHH 458
           +  +AI LF  M  + ++P +IT  V+L AC + GLV+EG   FE+M  D G +P++EH 
Sbjct: 511 HGFEAIDLFKKMSIAGIRPTQITFMVVLTACNYCGLVEEGRLLFEAMKLDHGFVPDKEHF 570

Query: 459 ACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNP 518
           +C+++LLA+AG  ++ ++ +E+MP++ D+ +W+++   C  +G   MG+KV +++I+  P
Sbjct: 571 SCMVDLLARAGYVEEAIDLVEEMPFDADASMWSSVLRGCVANGYKAMGKKVAEKIIELEP 630

Query: 519 QSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIE 562
           ++S  +  LS+I++  G       VR+L+ E    K    SW +
Sbjct: 631 ENSVAYVQLSAIFATSGDWESSALVRKLMRENNVSKNPGSSWAD 674



 Score =  199 bits (507), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 133/466 (28%), Positives = 243/466 (52%), Gaps = 18/466 (3%)

Query: 65  SKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNN 124
           S+S K+G   +L  ++ +R     F  N +I  Y   G    + + FD +P ++ +S+N 
Sbjct: 53  SRSGKMGIARNLFDEMPER---NYFSWNTMIEGYMNSGDKGTSLRFFDMMPERDGYSWNV 109

Query: 125 MLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCN 184
           ++SG+A  G +  AR LFD M E+DVV+ N+++ GY  +G  EE L+ +K L+    S +
Sbjct: 110 VISGFAKAGELSVARRLFDAMPEKDVVTLNSLLHGYILNGYSEEALRLFKELK---FSAD 166

Query: 185 EFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFD 244
             +   +L  C +LE LK  +Q+H Q+L+ G   +  ++SS+V+ YAKCG+L  A  + +
Sbjct: 167 AITLTTVLKACAELEALKRGKQIHAQILIGGVECDSKMNSSLVNVYAKCGDLRMASYMLE 226

Query: 245 ETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALEL 304
           +    D  + +T++SGYA  G +  + +LF+    +  + W ++I+GY  N +  +AL L
Sbjct: 227 QIGEPDDHSLSTLISGYANCGRVNESRRLFDRKSNRCVILWNSMISGYIANNMKFEALVL 286

Query: 305 FTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSK 364
           F  M       +  T ++ + AC  +  L+ GKQ+H    +     + +V S+L+DMYSK
Sbjct: 287 FNEMRN-ETWEDSRTLAAVINACIGLGFLETGKQMHCHACKFGLVDDIVVASTLLDMYSK 345

Query: 365 CGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAV 424
           CG   +  ++F   ++ + ++L N+MI      G  + A R+F  +   S+    I+   
Sbjct: 346 CGSPMEACKLFSEVESYD-TILLNSMIKVYFSCGRIDDAKRVFERIENKSL----ISWNS 400

Query: 425 ILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQA---GCSDQLMNQLEKM 481
           + N  + +G   E L YF  M H L +  ++   + +I   A     G  +Q+  +   +
Sbjct: 401 MTNGFSQNGCPVETLEYFSQM-HKLDLPTDEVSLSSVISACASISSLGLGEQVFARATIV 459

Query: 482 PYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLI--DQNPQSSATHG 525
             + D  + ++L  +    G+++ GR+V D ++  D+ P +S   G
Sbjct: 460 GLDSDQIVSSSLIDLYCKCGSVENGRRVFDTMVKSDEVPWNSMISG 505



 Score =  142 bits (359), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 108/414 (26%), Positives = 198/414 (47%), Gaps = 79/414 (19%)

Query: 181 ISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVI-SSSIVDAYAKCGELSDA 239
           + C  + +  +L  C       L RQ +G  L  GF+S++VI ++ ++  Y++ G++  A
Sbjct: 3   VDCRRY-YVRLLQSCSNRNRETLWRQTNGLFLKKGFISSIVIVANHLLQIYSRSGKMGIA 61

Query: 240 RRLFDETDARDVLTWTTM-------------------------------VSGYAKLGDME 268
           R LFDE   R+  +W TM                               +SG+AK G++ 
Sbjct: 62  RNLFDEMPERNYFSWNTMIEGYMNSGDKGTSLRFFDMMPERDGYSWNVVISGFAKAGELS 121

Query: 269 SASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACA 328
            A +LF+ MPEK+ V+  +L+ GY  NG  ++AL LF     L+   +  T ++ L ACA
Sbjct: 122 VARRLFDAMPEKDVVTLNSLLHGYILNGYSEEALRLFKE---LKFSADAITLTTVLKACA 178

Query: 329 SIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCL-------------------- 368
            + +LK GKQ+H  ++      ++ + SSL+++Y+KCG L                    
Sbjct: 179 ELEALKRGKQIHAQILIGGVECDSKMNSSLVNVYAKCGDLRMASYMLEQIGEPDDHSLST 238

Query: 369 -----------NDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKP 417
                      N+ R++FD   N+   +LWN+MIS    +    +A+ LF++M R+    
Sbjct: 239 LISGYANCGRVNESRRLFDRKSNR-CVILWNSMISGYIANNMKFEALVLFNEM-RNETWE 296

Query: 418 DKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGC---SDQL 474
           D  TLA ++NAC   G ++ G           G++ +    + L+++ ++ G    + +L
Sbjct: 297 DSRTLAAVINACIGLGFLETG-KQMHCHACKFGLVDDIVVASTLLDMYSKCGSPMEACKL 355

Query: 475 MNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQN--PQSSATHGL 526
            +++E     +D+ L N++  V    G ID  ++V +++ +++    +S T+G 
Sbjct: 356 FSEVES----YDTILLNSMIKVYFSCGRIDDAKRVFERIENKSLISWNSMTNGF 405


>gi|357154550|ref|XP_003576820.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
           mitochondrial-like [Brachypodium distachyon]
          Length = 657

 Score =  326 bits (835), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 177/549 (32%), Positives = 301/549 (54%), Gaps = 37/549 (6%)

Query: 45  QRGIRLPAE-TLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGS 103
           QRGI LP E TL F+L+ C   ++++     H                     +  K G 
Sbjct: 107 QRGI-LPNEFTLPFVLKACTTVRAVEHALAAH--------------------GVVVKLGF 145

Query: 104 DVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKS 163
                       V+ +F  N +L  +A+ G ++ +R  F  MA+R+VVSWNTMI GYA++
Sbjct: 146 ------------VQQIFVANALLHFHASAGSLRDSRRFFGEMADRNVVSWNTMIGGYAQA 193

Query: 164 GAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVIS 223
           G V E    +  +R   +  + F+   +L  C     L++ R VH  +LV+G   + ++ 
Sbjct: 194 GEVSEACALFGEMRHQGLLADVFTLVSLLFACSSEGNLEVGRLVHCHMLVSGSRVDRILG 253

Query: 224 SSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPV 283
           ++++D Y KCG+L  A R FD    ++V+TWT+M+   AK G +++    F +MPE+N V
Sbjct: 254 NALLDMYGKCGDLWMAHRCFDMMPIKNVVTWTSMLCAQAKHGSVDAVRDWFEQMPERNIV 313

Query: 284 SWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFL 343
           SW  +I+ Y + G   + L+L+ RM  L I P++ T +  L AC     L  GK +H + 
Sbjct: 314 SWNAMISCYVQCGRLHETLDLYNRMRSLGITPDEFTLAGVLSACGQNGDLASGKMIHCY- 372

Query: 344 IRTNFRSNTI-VMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQ 402
           +R NF    + +++SL+DMY++CG ++    +F    NK N + WN +I AL  HG  ++
Sbjct: 373 VRDNFNDPGVTLLNSLLDMYARCGQVDTAIGLFTEMPNK-NVISWNVIIGALAMHGRAQE 431

Query: 403 AIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLI 462
            +  F  MV  +  PD+IT   +L+AC+H GL++ G  YFE+M     + P  EH+ C++
Sbjct: 432 TVTFFRTMVSDAFSPDEITFVGLLSACSHGGLLEAGEYYFEAMARVYNVEPEVEHYGCMV 491

Query: 463 ELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSA 522
           +LL + G   + +N ++ M  + D  +W AL G CRIHGN+++G+ V+ QL++    +  
Sbjct: 492 DLLGRRGHLAKAVNLIKDMSIKPDVVVWGALLGACRIHGNVEIGKLVIKQLLELEGITGG 551

Query: 523 THGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDV 582
              L+ +++    +   ++K+R+L+ E+  KK+  +S IE++N +H F V D  H   + 
Sbjct: 552 LFVLICNLFYETNQWEDMKKLRKLMKEQGTKKDMGVSSIEVKNIIHEFGVEDLRHESTNE 611

Query: 583 LYSVLEQLA 591
           +Y+ ++QL+
Sbjct: 612 IYAAVDQLS 620



 Score =  152 bits (385), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 108/402 (26%), Positives = 184/402 (45%), Gaps = 69/402 (17%)

Query: 133 GMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGIL 192
           G + HAR LFD + E D   +NT++  Y+ S   +E L+ ++ + +  I  NEF+   +L
Sbjct: 62  GGLCHARRLFDRIPEPDRFMYNTLVRAYSNSDCPQEALRLHRGVLQRGILPNEFTLPFVL 121

Query: 193 TICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVL 252
             C  +  ++     HG V+  GF+  + ++++++  +A  G L D+RR F E   R+V+
Sbjct: 122 KACTTVRAVEHALAAHGVVVKLGFVQQIFVANALLHFHASAGSLRDSRRFFGEMADRNVV 181

Query: 253 TWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILR 312
           +W TM+ GYA+ G++  A  LF EM  +  ++                  ++F       
Sbjct: 182 SWNTMIGGYAQAGEVSEACALFGEMRHQGLLA------------------DVF------- 216

Query: 313 IRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGR 372
                 T  S L AC+S  +L+ G+ VH  ++ +  R + I+ ++L+DMY KCG L    
Sbjct: 217 ------TLVSLLFACSSEGNLEVGRLVHCHMLVSGSRVDRILGNALLDMYGKCGDLWMAH 270

Query: 373 QVFDLTDNKE----NSML--------------------------WNTMISALTQHGYDEQ 402
           + FD+   K      SML                          WN MIS   Q G   +
Sbjct: 271 RCFDMMPIKNVVTWTSMLCAQAKHGSVDAVRDWFEQMPERNIVSWNAMISCYVQCGRLHE 330

Query: 403 AIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGL---TYFESMTHDLGIIPNQEHHA 459
            + L++ M    + PD+ TLA +L+AC  +G +  G     Y     +D G+        
Sbjct: 331 TLDLYNRMRSLGITPDEFTLAGVLSACGQNGDLASGKMIHCYVRDNFNDPGVTLLNS--- 387

Query: 460 CLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHG 501
            L+++ A+ G  D  +    +MP + +   WN + G   +HG
Sbjct: 388 -LLDMYARCGQVDTAIGLFTEMPNK-NVISWNVIIGALAMHG 427



 Score =  152 bits (385), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 106/408 (25%), Positives = 185/408 (45%), Gaps = 66/408 (16%)

Query: 31  GQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFL 90
           G++SEA +    +  +G+     TL  +L  C+   +L++G+ VH H+ ++  +     L
Sbjct: 194 GEVSEACALFGEMRHQGLLADVFTLVSLLFACSSEGNLEVGRLVHCHMLVSGSRV-DRIL 252

Query: 91  SNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDV 150
            N L+ MY KCG    A + FD +P+KN+ ++ +ML   A  G +   R+ F+ M ER++
Sbjct: 253 GNALLDMYGKCGDLWMAHRCFDMMPIKNVVTWTSMLCAQAKHGSVDAVRDWFEQMPERNI 312

Query: 151 VSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQ 210
           VSWN MI  Y + G + E L  Y  +R   I+ +EF+ AG+L+ C +  +L   + +H  
Sbjct: 313 VSWNAMISCYVQCGRLHETLDLYNRMRSLGITPDEFTLAGVLSACGQNGDLASGKMIHCY 372

Query: 211 VLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESA 270
           V        V + +S++D YA+CG++  A  LF E   ++V++W  ++   A        
Sbjct: 373 VRDNFNDPGVTLLNSLLDMYARCGQVDTAIGLFTEMPNKNVISWNVIIGALAM------- 425

Query: 271 SKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASI 330
                                   +G  Q+ +  F  M+     P++ TF   L AC+  
Sbjct: 426 ------------------------HGRAQETVTFFRTMVSDAFSPDEITFVGLLSACS-- 459

Query: 331 VSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTM 390
                    HG L+               + Y +        +V+++    E+   +  M
Sbjct: 460 ---------HGGLLEAG------------EYYFEAMA-----RVYNVEPEVEH---YGCM 490

Query: 391 ISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEG 438
           +  L + G+  +A+ L  DM   S+KPD +    +L AC   G V+ G
Sbjct: 491 VDLLGRRGHLAKAVNLIKDM---SIKPDVVVWGALLGACRIHGNVEIG 535



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 74/314 (23%), Positives = 138/314 (43%), Gaps = 32/314 (10%)

Query: 206 QVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLG 265
           Q+H  ++V GF     ++S ++ +Y                           +S   + G
Sbjct: 28  QIHAHLVVHGFSDVSSVASQLIASYCT-------------------------LSAGDRDG 62

Query: 266 DMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLC 325
            +  A +LF+ +PE +   + TL+  Y+ +   Q+AL L   ++   I PN+ T    L 
Sbjct: 63  GLCHARRLFDRIPEPDRFMYNTLVRAYSNSDCPQEALRLHRGVLQRGILPNEFTLPFVLK 122

Query: 326 ACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSM 385
           AC ++ +++H    HG +++  F     V ++L+  ++  G L D R+ F    ++ N +
Sbjct: 123 ACTTVRAVEHALAAHGVVVKLGFVQQIFVANALLHFHASAGSLRDSRRFFGEMADR-NVV 181

Query: 386 LWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESM 445
            WNTMI    Q G   +A  LF +M    +  D  TL  +L AC+  G ++ G      M
Sbjct: 182 SWNTMIGGYAQAGEVSEACALFGEMRHQGLLADVFTLVSLLFACSSEGNLEVGRLVHCHM 241

Query: 446 THDLGIIPNQEHHACLIELLAQAGCSDQLMNQ--LEKMPYEHDSYLWNALHGVCRIHGNI 503
                 +     +A L+++  +  C D  M     + MP + +   W ++      HG++
Sbjct: 242 LVSGSRVDRILGNA-LLDMYGK--CGDLWMAHRCFDMMPIK-NVVTWTSMLCAQAKHGSV 297

Query: 504 DMGRKVVDQLIDQN 517
           D  R   +Q+ ++N
Sbjct: 298 DAVRDWFEQMPERN 311



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 32/115 (27%), Positives = 56/115 (48%), Gaps = 7/115 (6%)

Query: 332 SLKHGKQVHGFLIRTNFRSNTIVMSSLIDMY------SKCGCLNDGRQVFDLTDNKENSM 385
           S++H  Q+H  L+   F   + V S LI  Y       + G L   R++FD     +  M
Sbjct: 22  SIQHLDQIHAHLVVHGFSDVSSVASQLIASYCTLSAGDRDGGLCHARRLFDRIPEPDRFM 81

Query: 386 LWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLT 440
            +NT++ A +     ++A+RL   +++  + P++ TL  +L ACT    V+  L 
Sbjct: 82  -YNTLVRAYSNSDCPQEALRLHRGVLQRGILPNEFTLPFVLKACTTVRAVEHALA 135


>gi|225453947|ref|XP_002274056.1| PREDICTED: pentatricopeptide repeat-containing protein At2g45350,
           chloroplastic-like [Vitis vinifera]
          Length = 635

 Score =  326 bits (835), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 196/590 (33%), Positives = 312/590 (52%), Gaps = 58/590 (9%)

Query: 18  NCLIQSFLSLISKGQ-LSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHL 76
           N +I+SF    S G+   EA    +L+ + G+ +   + + +L+ C+    +K G ++H 
Sbjct: 91  NAIIKSF----SHGEDPREAFVIFNLMLENGVCVDKFSFSLVLKACSRLGLIKEGMQIHG 146

Query: 77  HLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMK 136
            L   +  +   FL N L+ +Y +CG    AR++FD++  ++  S+N+M+ GY   GM+K
Sbjct: 147 LLGRMEIGS-DVFLQNCLMCLYLRCGCLGIARQLFDRMMKRDSVSFNSMIDGYVKHGMVK 205

Query: 137 HARNLFD--NMAERDVVSWNTMIIGYAKSGAVEEGLK-----FYKVLRRFSISCNEFSFA 189
            AR LFD   M +++++SWN+MI GYA+S   EEGL+     F ++ +R  IS N     
Sbjct: 206 SARELFDVMPMEQKNLISWNSMISGYARS---EEGLRVAWELFEEMPKRDLISWN----- 257

Query: 190 GILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDAR 249
                                              S++D   KCG++ +A  LF++   R
Sbjct: 258 -----------------------------------SMIDGCVKCGKMENAHHLFNQMPKR 282

Query: 250 DVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMM 309
           DV++W  MV GYAKLG+++ A  LF+EMPE++ +S   ++AGY +NG   +AL  F  M+
Sbjct: 283 DVVSWANMVDGYAKLGEIDIARGLFDEMPERDVISCNAMMAGYVQNGHLMEALNFFHDML 342

Query: 310 ILR-IRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCL 368
             + + P+  T    L A A +     G  +H ++    F  +  +  +LIDMY+KCG +
Sbjct: 343 SRKELFPDNATLLITLSAIAQLGHFDEGVALHCYIEDNGFSLSEKLGVALIDMYAKCGSI 402

Query: 369 NDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNA 428
           ++   VF+  D+K     WN +I  L  HG  E A  LF +M +  VKPD IT   +LNA
Sbjct: 403 DNALSVFEDIDDKSIDH-WNAIIGGLAIHGLGEVAFELFMEMEKLFVKPDDITFIGVLNA 461

Query: 429 CTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSY 488
           C H+GLV+EGL  FE M     + P  +H+ C++++L +AG  ++    +EKMP E +  
Sbjct: 462 CNHAGLVKEGLMCFELMRRVHKVEPKLQHYGCMVDILGRAGHVEEAKKFVEKMPIEPNDV 521

Query: 489 LWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLIN 548
           +W  L   CR H N  +G  V   LI  +  + +++ LLS+IY+  G    V ++R ++ 
Sbjct: 522 VWRTLLSACRNHENFTIGEPVAKHLISVDSYNPSSYVLLSNIYAGFGMWNDVYRIRMMMK 581

Query: 549 ERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQMGEDA 598
           +R  KK    S IE+E  VH F V D  HP    +YS+L+ L+    E A
Sbjct: 582 QRDLKKIPGCSQIELEGNVHEFFVRDKSHPQVREIYSMLDSLSALNSEVA 631



 Score =  143 bits (360), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 97/353 (27%), Positives = 176/353 (49%), Gaps = 15/353 (4%)

Query: 153 WNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVL 212
           WN +I  ++      E    + ++    +  ++FSF+ +L  C +L  +K   Q+HG + 
Sbjct: 90  WNAIIKSFSHGEDPREAFVIFNLMLENGVCVDKFSFSLVLKACSRLGLIKEGMQIHGLLG 149

Query: 213 VTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASK 272
                S+V + + ++  Y +CG L  AR+LFD    RD +++ +M+ GY K G ++SA +
Sbjct: 150 RMEIGSDVFLQNCLMCLYLRCGCLGIARQLFDRMMKRDSVSFNSMIDGYVKHGMVKSARE 209

Query: 273 LFNEMP--EKNPVSWTTLIAGYTRNGLGQK-ALELFTRMMILRIRPNQHTFSSCLCACAS 329
           LF+ MP  +KN +SW ++I+GY R+  G + A ELF  M    +         C+  C  
Sbjct: 210 LFDVMPMEQKNLISWNSMISGYARSEEGLRVAWELFEEMPKRDLISWNSMIDGCV-KCGK 268

Query: 330 IVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNT 389
           + +  H       L     + + +  ++++D Y+K G ++  R +FD    ++  +  N 
Sbjct: 269 MENAHH-------LFNQMPKRDVVSWANMVDGYAKLGEIDIARGLFDEMPERD-VISCNA 320

Query: 390 MISALTQHGYDEQAIRLFHDMV-RSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHD 448
           M++   Q+G+  +A+  FHDM+ R  + PD  TL + L+A    G   EG+        D
Sbjct: 321 MMAGYVQNGHLMEALNFFHDMLSRKELFPDNATLLITLSAIAQLGHFDEGVA-LHCYIED 379

Query: 449 LGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHG 501
            G   +++    LI++ A+ G  D  ++  E +  +   + WNA+ G   IHG
Sbjct: 380 NGFSLSEKLGVALIDMYAKCGSIDNALSVFEDIDDKSIDH-WNAIIGGLAIHG 431



 Score = 82.4 bits (202), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 81/336 (24%), Positives = 148/336 (44%), Gaps = 49/336 (14%)

Query: 192 LTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGE---LSDARRLFDETDA 248
           L +  K + L    Q+H +++ TGF++N  +++ I+  ++       +  AR LF     
Sbjct: 18  LILLPKSKTLHDVNQIHSRLITTGFINNPSLTTRIILNFSSSSHKPLVEFARYLF----- 72

Query: 249 RDVLTWTTMVSGYAKLGDMESASKLFNEMPEK--NPVSWTTLIAGYTRNGLGQKALELFT 306
                                 S+ F     K  NP  W  +I  ++     ++A  +F 
Sbjct: 73  ---------------------MSRHFGRKHRKQDNPFLWNAIIKSFSHGEDPREAFVIFN 111

Query: 307 RMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCG 366
            M+   +  ++ +FS  L AC+ +  +K G Q+HG L R    S+  + + L+ +Y +CG
Sbjct: 112 LMLENGVCVDKFSFSLVLKACSRLGLIKEGMQIHGLLGRMEIGSDVFLQNCLMCLYLRCG 171

Query: 367 CLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVIL 426
           CL   RQ+FD    K +S+ +N+MI    +HG  + A  LF  M     + + I+   ++
Sbjct: 172 CLGIARQLFDRM-MKRDSVSFNSMIDGYVKHGMVKSARELFDVMPME--QKNLISWNSMI 228

Query: 427 NACTHSGLVQEGL----TYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMP 482
           +    S   +EGL      FE M     I  N     C+     + G  +   +   +MP
Sbjct: 229 SGYARS---EEGLRVAWELFEEMPKRDLISWNSMIDGCV-----KCGKMENAHHLFNQMP 280

Query: 483 YEHDSYLW-NALHGVCRIHGNIDMGRKVVDQLIDQN 517
            + D   W N + G  ++ G ID+ R + D++ +++
Sbjct: 281 -KRDVVSWANMVDGYAKL-GEIDIARGLFDEMPERD 314


>gi|224091072|ref|XP_002309169.1| predicted protein [Populus trichocarpa]
 gi|222855145|gb|EEE92692.1| predicted protein [Populus trichocarpa]
          Length = 619

 Score =  325 bits (834), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 180/531 (33%), Positives = 293/531 (55%), Gaps = 21/531 (3%)

Query: 67  SLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNML 126
           SL L K  H+ ++L Q       L  H+ +   + G D D+            +  N +L
Sbjct: 3   SLILNKSAHIKIRLFQGFNSLKHL-KHVHAALLRLGLDEDS------------YLLNKVL 49

Query: 127 SGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEF 186
               N G   ++  +F    E ++  +NTMI G   + + +E ++ Y  +R+  +S + F
Sbjct: 50  RFSFNFGNTNYSHRIFHQTKEPNIFLFNTMIHGLVLNDSFQESIEIYHSMRKEGLSPDSF 109

Query: 187 SFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDET 246
           +F  +L  C +L + KL  ++HG V+  G  S+  +++S+V  Y KCG + +A ++FD+ 
Sbjct: 110 TFPFLLKACARLLDSKLGIKLHGLVVKAGCESDAFVNTSLVSLYGKCGFIDNAFKVFDDI 169

Query: 247 DARDVLTWTTMVSGYAKLG------DM-ESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQ 299
             ++V  WT ++SGY  +G      DM   A  +F+ M EK+ VSW+++I GY  NGL +
Sbjct: 170 PEKNVAAWTAIISGYIGVGKCREAIDMFRRACSVFDGMLEKDIVSWSSMIQGYASNGLPK 229

Query: 300 KALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLI 359
           +AL+LF +M+    RP+ +     LCACA + +L+ G      + R  F  N ++ ++LI
Sbjct: 230 EALDLFFKMLNEGFRPDCYAMVGVLCACARLGALELGNWASNLMDRNEFLGNPVLGTALI 289

Query: 360 DMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDK 419
           DMY+KCG ++   +VF     K++ ++WN  IS L   G+ + A  LF  M +S ++PD 
Sbjct: 290 DMYAKCGRMDSAWEVFRGM-RKKDIVVWNAAISGLAMSGHVKAAFGLFGQMEKSGIEPDG 348

Query: 420 ITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLE 479
            T   +L ACTH+GLV EG  YF SM     + P  EH+ C+++LL +AG  D+    ++
Sbjct: 349 NTFVGLLCACTHAGLVDEGRQYFNSMERVFTLTPEIEHYGCMVDLLGRAGFLDEAHQLVK 408

Query: 480 KMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRL 539
            MP E ++ +W AL G CR+H +  +   V+ QLI   P +S  + LLS+IYSA  K   
Sbjct: 409 SMPMEANAIVWGALLGGCRLHRDTQLVEGVLKQLIALEPSNSGNYVLLSNIYSASHKWED 468

Query: 540 VEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQL 590
             K+R +++ER  KK    SWIE++  VH F V D+ HP+ + +Y+ L +L
Sbjct: 469 AAKIRSIMSERGIKKVPGYSWIEVDGVVHEFLVGDTSHPLSEKIYAKLGEL 519



 Score =  165 bits (417), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 110/406 (27%), Positives = 190/406 (46%), Gaps = 45/406 (11%)

Query: 3   SNFSPRGINRKNLPNNCLIQSFL-SLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQ 61
           +N+S R  ++   PN  L  + +  L+      E+I     + + G+   + T  F+L+ 
Sbjct: 58  TNYSHRIFHQTKEPNIFLFNTMIHGLVLNDSFQESIEIYHSMRKEGLSPDSFTFPFLLKA 117

Query: 62  CAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFS 121
           CA     KLG ++H  L +        F++  L+S+Y KCG   +A KVFD IP KN+ +
Sbjct: 118 CARLLDSKLGIKLH-GLVVKAGCESDAFVNTSLVSLYGKCGFIDNAFKVFDDIPEKNVAA 176

Query: 122 YNNMLSGYANLG-------MMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLK-FY 173
           +  ++SGY  +G       M + A ++FD M E+D+VSW++MI GYA +G  +E L  F+
Sbjct: 177 WTAIISGYIGVGKCREAIDMFRRACSVFDGMLEKDIVSWSSMIQGYASNGLPKEALDLFF 236

Query: 174 KVLRR-FSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAK 232
           K+L   F   C  ++  G+L  C +L  L+L       +    FL N V+ ++++D YAK
Sbjct: 237 KMLNEGFRPDC--YAMVGVLCACARLGALELGNWASNLMDRNEFLGNPVLGTALIDMYAK 294

Query: 233 CGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGY 292
           CG +  A  +F     +D++ W   +SG A  G +++A  LF +M +             
Sbjct: 295 CGRMDSAWEVFRGMRKKDIVVWNAAISGLAMSGHVKAAFGLFGQMEKSG----------- 343

Query: 293 TRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNT 352
                               I P+ +TF   LCAC     +  G+Q    + R    +  
Sbjct: 344 --------------------IEPDGNTFVGLLCACTHAGLVDEGRQYFNSMERVFTLTPE 383

Query: 353 IV-MSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQH 397
           I     ++D+  + G L++  Q+      + N+++W  ++     H
Sbjct: 384 IEHYGCMVDLLGRAGFLDEAHQLVKSMPMEANAIVWGALLGGCRLH 429


>gi|347954514|gb|AEP33757.1| organelle transcript processing 82, partial [Aethionema
           cordifolium]
          Length = 679

 Score =  325 bits (834), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 189/568 (33%), Positives = 301/568 (52%), Gaps = 38/568 (6%)

Query: 34  SEAISSLDL---LAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFL 90
           S+ IS+L+L   +   G+   + T  F+ + CA+SK+ + GK++H  + L    T    +
Sbjct: 57  SDPISALNLYVYMISLGLSPNSYTFPFLFKSCAKSKAAQEGKQIHAQI-LKYGLTVDLHV 115

Query: 91  SNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDV 150
              LISMY + G   DA KVFD    +++ SY  M++GYA+ G M  A+ +FD +  +DV
Sbjct: 116 HTSLISMYAQNGIVEDAHKVFDTSSHRDVVSYTAMITGYASRGNMDKAQKMFDEIPIKDV 175

Query: 151 VSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQ 210
           VSWN MI GYA+ G  +E L+ +  + +  +  +E + A +L+ C     ++L RQ+H  
Sbjct: 176 VSWNAMISGYAEIGRYKEALELFNEMMKMDVKPDESTMATVLSTCTHSGNVELGRQIHSW 235

Query: 211 VLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESA 270
           +   GF SN+ + ++++D Y+KCGE                               ME A
Sbjct: 236 IDNHGFGSNLKLVNALIDLYSKCGE-------------------------------MERA 264

Query: 271 SKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASI 330
             LF  +  K+ +SW TLI GY      ++AL +F  M+ L   PN  T  S L ACA +
Sbjct: 265 HGLFEGLQYKDVISWNTLIGGYAYINHHKEALLVFQEMLKLGETPNDVTMLSILPACAHL 324

Query: 331 VSLKHGKQVHGFLIRT--NFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWN 388
            ++  G+ +H ++ +      +NT + +SLIDMY+KCG +    QVFD   NK  S   N
Sbjct: 325 GAIDIGRWIHVYIDKKLKGIITNTSLQTSLIDMYAKCGNIEAANQVFDTILNKSLSSC-N 383

Query: 389 TMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHD 448
            MI     HG  + A  L   M +  ++PD IT   +L+AC+H+GL   G   F+SMT D
Sbjct: 384 AMIFGFAMHGRADAAFDLLSRMKKDGIEPDDITFVGLLSACSHAGLSDLGRKIFKSMTLD 443

Query: 449 LGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRK 508
             I P  EH+ C+I+LL ++G   +    +  M  E D  +W +L   C+IH N+++G  
Sbjct: 444 YRIEPKLEHYGCMIDLLGRSGLFKEAEELINSMTMEPDGVIWGSLLKACKIHKNLELGEL 503

Query: 509 VVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVH 568
           +  +L+   P++  ++ LLS+IY+   +   V +VR L+N++  KK    S IEI++ VH
Sbjct: 504 IAQKLMKIEPKNPGSYVLLSNIYATSARWDDVARVRTLLNDKGLKKVPGCSSIEIDSMVH 563

Query: 569 AFSVSDSLHPMRDVLYSVLEQLAGQMGE 596
            F + D  HP    +Y +LE++   + E
Sbjct: 564 EFLIGDKFHPQNKEIYKMLEEIDSLLAE 591



 Score =  213 bits (543), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 127/460 (27%), Positives = 232/460 (50%), Gaps = 39/460 (8%)

Query: 135 MKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTI 194
           + +A ++F ++ E + +SWNTMI G+A S      L  Y  +    +S N ++F  +   
Sbjct: 28  LPYAISVFKSIQEPNQLSWNTMIRGHALSSDPISALNLYVYMISLGLSPNSYTFPFLFKS 87

Query: 195 CVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTW 254
           C K +  +  +Q+H Q+L  G   ++ + +S++  YA+ G + DA ++FD +  RDV+++
Sbjct: 88  CAKSKAAQEGKQIHAQILKYGLTVDLHVHTSLISMYAQNGIVEDAHKVFDTSSHRDVVSY 147

Query: 255 TTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIR 314
           T M++GYA  G+M+ A K+F+E+P K+ VSW  +I+GY   G  ++ALELF  MM + ++
Sbjct: 148 TAMITGYASRGNMDKAQKMFDEIPIKDVVSWNAMISGYAEIGRYKEALELFNEMMKMDVK 207

Query: 315 PNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQV 374
           P++ T ++ L  C    +++ G+Q+H ++    F SN  ++++LID+YSKCG +     +
Sbjct: 208 PDESTMATVLSTCTHSGNVELGRQIHSWIDNHGFGSNLKLVNALIDLYSKCGEMERAHGL 267

Query: 375 FDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGL 434
           F+    K+  + WNT+I       + ++A+ +F +M++    P+ +T+  IL AC H G 
Sbjct: 268 FEGLQYKD-VISWNTLIGGYAYINHHKEALLVFQEMLKLGETPNDVTMLSILPACAHLGA 326

Query: 435 VQEGLTYFESMTHDL-GIIPNQEHHACLIELLAQAG------------------------ 469
           +  G      +   L GII N      LI++ A+ G                        
Sbjct: 327 IDIGRWIHVYIDKKLKGIITNTSLQTSLIDMYAKCGNIEAANQVFDTILNKSLSSCNAMI 386

Query: 470 ----------CSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQL-IDQNP 518
                      +  L+++++K   E D   +  L   C   G  D+GRK+   + +D   
Sbjct: 387 FGFAMHGRADAAFDLLSRMKKDGIEPDDITFVGLLSACSHAGLSDLGRKIFKSMTLDYRI 446

Query: 519 QSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAI 558
           +    H     +   LG+  L ++  +LIN    + +  I
Sbjct: 447 EPKLEH--YGCMIDLLGRSGLFKEAEELINSMTMEPDGVI 484



 Score = 92.8 bits (229), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 68/305 (22%), Positives = 134/305 (43%), Gaps = 42/305 (13%)

Query: 18  NCLIQSFLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLH 77
           N +I  +  +   G+  EA+   + + +  ++    T+A +L  C  S +++LG+++H  
Sbjct: 179 NAMISGYAEI---GRYKEALELFNEMMKMDVKPDESTMATVLSTCTHSGNVELGRQIHSW 235

Query: 78  LKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKH 137
           +           L N LI +Y KCG    A  +F+ +  K++ S+N ++ GYA +   K 
Sbjct: 236 ID-NHGFGSNLKLVNALIDLYSKCGEMERAHGLFEGLQYKDVISWNTLIGGYAYINHHKE 294

Query: 138 ARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVK 197
           A  +F  M                                +   + N+ +   IL  C  
Sbjct: 295 ALLVFQEML-------------------------------KLGETPNDVTMLSILPACAH 323

Query: 198 LEELKLTRQVHGQV--LVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWT 255
           L  + + R +H  +   + G ++N  + +S++D YAKCG +  A ++FD    + + +  
Sbjct: 324 LGAIDIGRWIHVYIDKKLKGIITNTSLQTSLIDMYAKCGNIEAANQVFDTILNKSLSSCN 383

Query: 256 TMVSGYAKLGDMESASKLFNEMP----EKNPVSWTTLIAGYTRNGLGQKALELFTRMMI- 310
            M+ G+A  G  ++A  L + M     E + +++  L++  +  GL     ++F  M + 
Sbjct: 384 AMIFGFAMHGRADAAFDLLSRMKKDGIEPDDITFVGLLSACSHAGLSDLGRKIFKSMTLD 443

Query: 311 LRIRP 315
            RI P
Sbjct: 444 YRIEP 448


>gi|242058523|ref|XP_002458407.1| hypothetical protein SORBIDRAFT_03g032890 [Sorghum bicolor]
 gi|241930382|gb|EES03527.1| hypothetical protein SORBIDRAFT_03g032890 [Sorghum bicolor]
          Length = 695

 Score =  325 bits (834), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 182/585 (31%), Positives = 301/585 (51%), Gaps = 35/585 (5%)

Query: 16  PNNCLIQSFLSLISKGQL-SEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRV 74
           P   L  +FLS +SK  L  E I  +  L +RG  +P+  +  +L+ CA+S +   G + 
Sbjct: 137 PTAALCCAFLSGLSKLSLHQEFIEVVSSLHRRGGAIPSGCIPLVLKSCAQSAASCQGSQT 196

Query: 75  HLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGM 134
           H H  L +      F+   L+  Y K G    A   F ++PVK+    N +++GY+  G 
Sbjct: 197 HCH-ALVRGMLGDVFVQTALVDFYAKNGDMDSALMAFKEMPVKDPIPMNCLITGYSKSGD 255

Query: 135 MKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTI 194
           ++ AR LFD+M  R   SWN+MI  YA  G   E L  +  + R   S N  +   + +I
Sbjct: 256 VEEARRLFDSMPRRTSASWNSMIACYAHGGEFREALTLFDQMLREGASPNAITITTVFSI 315

Query: 195 CVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTW 254
           C K  +L   R+                                AR    E D ++V+  
Sbjct: 316 CAKTGDLDTGRR--------------------------------ARAWIREEDLQNVIVH 343

Query: 255 TTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIR 314
           T ++  Y K   ++ A   F+ MP ++ V+W+T+IAGY++NG   ++LELF RM     +
Sbjct: 344 TALMEMYVKCRAIDEARHEFDRMPRRDVVAWSTMIAGYSQNGRPHESLELFERMKATNCK 403

Query: 315 PNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQV 374
           PN+ T    L ACA + S + G+Q+  ++        + + S+LIDMY+KCG +   R V
Sbjct: 404 PNEVTLVGVLSACAQLGSDELGEQIGNYIESQTLPLTSYLGSALIDMYTKCGHVARARSV 463

Query: 375 FDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGL 434
           F+  + K   + WN+MI  L  +G+ E AI L+  MV   ++P+++T   +L ACTH+GL
Sbjct: 464 FNRMEQKV-VVTWNSMIRGLALNGFAEDAIALYRKMVGDGIQPNEVTFVALLTACTHAGL 522

Query: 435 VQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALH 494
           V +G+ +FE M     + P  EH AC+++LL ++G   +    +  M  E ++ +W+ L 
Sbjct: 523 VDKGIAFFEEMKKKQHVSPQVEHCACIVDLLCKSGRLWEAYKFICDMEVEPNAVIWSTLL 582

Query: 495 GVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKK 554
             CR H ++++ +    +L+   P +S+ + LLS+IY+  G    V ++R L+  +  +K
Sbjct: 583 SACRAHADVELAKLAAGKLVALEPNNSSIYVLLSNIYADAGLWGDVREIRDLMRSKNLQK 642

Query: 555 EQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQMGEDAP 599
             A SWIE++ +VH F V D+ HP    +Y+V++ L  Q+   +P
Sbjct: 643 LSAYSWIELDGEVHRFLVQDTYHPRSAEIYNVVDGLGLQLERTSP 687



 Score =  159 bits (403), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 95/323 (29%), Positives = 161/323 (49%), Gaps = 5/323 (1%)

Query: 130 ANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFA 189
           +N    + AR+LFD +           + G +K    +E ++    L R   +       
Sbjct: 119 SNASTYRAARHLFDVVPRPTAALCCAFLSGLSKLSLHQEFIEVVSSLHRRGGAIPSGCIP 178

Query: 190 GILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDAR 249
            +L  C +        Q H   LV G L +V + +++VD YAK G++  A   F E   +
Sbjct: 179 LVLKSCAQSAASCQGSQTHCHALVRGMLGDVFVQTALVDFYAKNGDMDSALMAFKEMPVK 238

Query: 250 DVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMM 309
           D +    +++GY+K GD+E A +LF+ MP +   SW ++IA Y   G  ++AL LF +M+
Sbjct: 239 DPIPMNCLITGYSKSGDVEEARRLFDSMPRRTSASWNSMIACYAHGGEFREALTLFDQML 298

Query: 310 ILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLN 369
                PN  T ++    CA    L  G++   + IR     N IV ++L++MY KC  ++
Sbjct: 299 REGASPNAITITTVFSICAKTGDLDTGRRARAW-IREEDLQNVIVHTALMEMYVKCRAID 357

Query: 370 DGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNAC 429
           + R  FD    + + + W+TMI+  +Q+G   +++ LF  M  ++ KP+++TL  +L+AC
Sbjct: 358 EARHEFDRMPRR-DVVAWSTMIAGYSQNGRPHESLELFERMKATNCKPNEVTLVGVLSAC 416

Query: 430 THSG---LVQEGLTYFESMTHDL 449
              G   L ++   Y ES T  L
Sbjct: 417 AQLGSDELGEQIGNYIESQTLPL 439


>gi|449453226|ref|XP_004144359.1| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
           mitochondrial-like [Cucumis sativus]
          Length = 785

 Score =  325 bits (833), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 185/568 (32%), Positives = 293/568 (51%), Gaps = 72/568 (12%)

Query: 92  NHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVV 151
           N +++ YF+     +A+ +FDK+  +N  S+N ++SGY N GM+  AR +FD M ER+VV
Sbjct: 133 NSIVAGYFQNKRPQEAQNMFDKMSERNTISWNGLVSGYINNGMINEAREVFDRMPERNVV 192

Query: 152 SWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQV 211
           SW  M+ GY K G + E    +  +   ++        G+L      E  +L   +  + 
Sbjct: 193 SWTAMVRGYVKEGMISEAETLFWQMPEKNVVSWTVMLGGLLQEGRIDEACRLFDMMPEK- 251

Query: 212 LVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSG----------- 260
                  +VV  ++++  Y + G L +AR LFDE   R+V++WTTM++G           
Sbjct: 252 -------DVVTRTNMIGGYCQVGRLVEARMLFDEMPRRNVVSWTTMITGYVQNQQVDIAR 304

Query: 261 --------------------YAKLGDMESASKLFNEMP---------------------- 278
                               Y   G ++ AS+LFN MP                      
Sbjct: 305 KLFEVMPEKNEVSWTAMLKGYTNCGRLDEASELFNAMPIKSVVACNAMILCFGQNGEVPK 364

Query: 279 ---------EKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACAS 329
                    EK+  +W+ +I  Y R GL   ALELF  M    IRPN  +  S L  CA 
Sbjct: 365 ARQVFDQMREKDEGTWSAMIKVYERKGLELDALELFRMMQREGIRPNFPSLISVLSVCAG 424

Query: 330 IVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNT 389
           + +L HG+++H  L+R+ F  +  V S L+ MY KCG L   +QVFD    K + ++WN+
Sbjct: 425 LANLDHGREIHAQLVRSQFDLDVYVASVLLSMYIKCGNLAKAKQVFDRFAVK-DVVMWNS 483

Query: 390 MISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDL 449
           +I+   QHG   +A+R+FHDM  S + PD +T   +L+AC+++G V++GL  F SM    
Sbjct: 484 IITGYAQHGLGVEALRVFHDMHFSGIMPDDVTFVGVLSACSYTGNVKKGLEIFNSMETKY 543

Query: 450 GIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKV 509
            +    EH+AC+++LL +AG  ++ M+ +EKMP E D+ +W AL G CR H  +D+    
Sbjct: 544 QVEQKIEHYACMVDLLGRAGKLNEAMDLIEKMPMEADAIIWGALLGACRTHMKLDLAEVA 603

Query: 510 VDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHA 569
             +L+   P+++    LLS+IY++ G+   V ++R+ + +R+  K    SWI +E KVH 
Sbjct: 604 AKKLLVLEPKNAGPFILLSNIYASQGRWDDVAELRRNMRDRRVSKYPGCSWIVVEKKVHK 663

Query: 570 FSVSDSL-HPMRDVLYSVLEQLAGQMGE 596
           F+  DS  HP    +  +LE L+G + E
Sbjct: 664 FTGGDSSGHPEHSEINRILEWLSGLLRE 691



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 103/362 (28%), Positives = 168/362 (46%), Gaps = 63/362 (17%)

Query: 92  NHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVV 151
           N LI+ Y + G    AR VFD++  KN+ S+N++++GY      + A+N+FD M+ER+ +
Sbjct: 102 NSLITRYSRLGQIEKARVVFDEMRDKNIISWNSIVAGYFQNKRPQEAQNMFDKMSERNTI 161

Query: 152 SWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQ----- 206
           SWN ++ GY  +G + E  + +  +   ++        G +   +  E   L  Q     
Sbjct: 162 SWNGLVSGYINNGMINEAREVFDRMPERNVVSWTAMVRGYVKEGMISEAETLFWQMPEKN 221

Query: 207 -VHGQVLVTGFL-----------------SNVVISSSIVDAYAKCGELSDARRLFDETDA 248
            V   V++ G L                  +VV  ++++  Y + G L +AR LFDE   
Sbjct: 222 VVSWTVMLGGLLQEGRIDEACRLFDMMPEKDVVTRTNMIGGYCQVGRLVEARMLFDEMPR 281

Query: 249 RDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRM 308
           R+V++WTTM++GY +   ++ A KLF  MPEKN VSWT ++ GYT  G   +A ELF  M
Sbjct: 282 RNVVSWTTMITGYVQNQQVDIARKLFEVMPEKNEVSWTAMLKGYTNCGRLDEASELFNAM 341

Query: 309 MILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCL 368
            I             + AC                            +++I  + + G +
Sbjct: 342 PI-----------KSVVAC----------------------------NAMILCFGQNGEV 362

Query: 369 NDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNA 428
              RQVFD    K+    W+ MI    + G +  A+ LF  M R  ++P+  +L  +L+ 
Sbjct: 363 PKARQVFDQMREKDEGT-WSAMIKVYERKGLELDALELFRMMQREGIRPNFPSLISVLSV 421

Query: 429 CT 430
           C 
Sbjct: 422 CA 423



 Score = 92.0 bits (227), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 84/351 (23%), Positives = 150/351 (42%), Gaps = 59/351 (16%)

Query: 211 VLVTGFLSNVVIS-SSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMES 269
           VL   + SN +IS +S++  Y++ G++  AR +FDE   +++++W ++V+GY +    + 
Sbjct: 88  VLNRFYCSNFIISRNSLITRYSRLGQIEKARVVFDEMRDKNIISWNSIVAGYFQNKRPQE 147

Query: 270 ASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACAS 329
           A  +F++M E+N +SW  L++GY  NG+  +A E+F RM      P +            
Sbjct: 148 AQNMFDKMSERNTISWNGLVSGYINNGMINEAREVFDRM------PER------------ 189

Query: 330 IVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNT 389
                                N +  ++++  Y K G +++   +F     K N + W  
Sbjct: 190 ---------------------NVVSWTAMVRGYVKEGMISEAETLFWQMPEK-NVVSWTV 227

Query: 390 MISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDL 449
           M+  L Q G  ++A RLF DM+    + D +T   ++      G + E    F+ M    
Sbjct: 228 MLGGLLQEGRIDEACRLF-DMM---PEKDVVTRTNMIGGYCQVGRLVEARMLFDEMPRR- 282

Query: 450 GIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGR-K 508
               N      +I    Q    D      E MP E +   W A+     + G  + GR  
Sbjct: 283 ----NVVSWTTMITGYVQNQQVDIARKLFEVMP-EKNEVSWTAM-----LKGYTNCGRLD 332

Query: 509 VVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAIS 559
              +L +  P  S      +++    G+   V K RQ+ ++ + K E   S
Sbjct: 333 EASELFNAMPIKSVV--ACNAMILCFGQNGEVPKARQVFDQMREKDEGTWS 381



 Score = 69.3 bits (168), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 41/148 (27%), Positives = 81/148 (54%), Gaps = 5/148 (3%)

Query: 30  KGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTF 89
           KG   +A+    ++ + GIR    +L  +L  CA   +L  G+ +H  L  +Q      +
Sbjct: 390 KGLELDALELFRMMQREGIRPNFPSLISVLSVCAGLANLDHGREIHAQLVRSQFDL-DVY 448

Query: 90  LSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERD 149
           +++ L+SMY KCG+   A++VFD+  VK++  +N++++GYA  G+   A  +F +M    
Sbjct: 449 VASVLLSMYIKCGNLAKAKQVFDRFAVKDVVMWNSIITGYAQHGLGVEALRVFHDMHFSG 508

Query: 150 VVSWNTMIIGY----AKSGAVEEGLKFY 173
           ++  +   +G     + +G V++GL+ +
Sbjct: 509 IMPDDVTFVGVLSACSYTGNVKKGLEIF 536


>gi|242076924|ref|XP_002448398.1| hypothetical protein SORBIDRAFT_06g026540 [Sorghum bicolor]
 gi|241939581|gb|EES12726.1| hypothetical protein SORBIDRAFT_06g026540 [Sorghum bicolor]
          Length = 865

 Score =  325 bits (833), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 169/583 (28%), Positives = 318/583 (54%), Gaps = 44/583 (7%)

Query: 26  SLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKT 85
           +L   G++ EA+  +  +  +G+RL + T    L  CA   SL+ GK++H  +    R  
Sbjct: 244 ALSQSGRVREALDMVVDMQSKGVRLDSTTYTSSLTACARLSSLRWGKQLHAQVI---RNL 300

Query: 86  PTT--FLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFD 143
           P    ++++ L+ +Y KCG                                 K A+ +F+
Sbjct: 301 PCIDPYVASALVELYAKCGC-------------------------------FKEAKGVFN 329

Query: 144 NMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKL 203
           ++ +R+ V+W  +I G+ + G   E ++ +  +R   ++ ++F+ A +++ C    +L L
Sbjct: 330 SLHDRNNVAWTVLIAGFLQHGCFTESVELFNQMRAELMTLDQFALATLISGCCSRMDLCL 389

Query: 204 TRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAK 263
            RQ+H   L +G +  VV+S+S++  YAKC  L  A  +F   + +D+++WT+M++ +++
Sbjct: 390 GRQLHSLCLKSGQIQAVVVSNSLISMYAKCDNLQSAESIFRFMNEKDIVSWTSMITAHSQ 449

Query: 264 LGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILR-IRPNQHTFSS 322
           +G++  A + F+ M  KN ++W  ++  Y ++G  +  L ++  M+  + +RP+  T+ +
Sbjct: 450 VGNIAKAREFFDGMSTKNVITWNAMLGAYIQHGAEEDGLRMYNVMLSEKDVRPDWVTYVT 509

Query: 323 CLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKE 382
               CA + + K G Q+ G  ++     +T V +++I MYSKCG + + R+VFD   N +
Sbjct: 510 LFKGCADLGANKLGDQIIGRTVKVGLILDTSVANAVITMYSKCGRILEARKVFDFL-NVK 568

Query: 383 NSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYF 442
           + + WN MI+  +QHG  +QAI +F D+++   KPD I+   +L+ C+HSGLVQEG +YF
Sbjct: 569 DIVSWNAMITGYSQHGMGKQAIEIFDDILKRGAKPDYISYVAVLSGCSHSGLVQEGKSYF 628

Query: 443 ESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGN 502
           + M     I P  EH +C+++LL +AG   +  + +++MP +  + +W AL   C+IHGN
Sbjct: 629 DMMKRVHNISPGLEHFSCMVDLLGRAGHLTEAKDLIDEMPMKPTAEVWGALLSACKIHGN 688

Query: 503 IDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIE 562
            ++       + + +   S ++ L++ IY+  GK     ++R+L+ ++  KK    SW+E
Sbjct: 689 NELAELAAKHVFELDSPDSGSYMLMAKIYADAGKSDDSAQIRKLMRDKGIKKNPGYSWME 748

Query: 563 IENKVHAFSVSDSLHP----MRDVLYSVLEQLA--GQMGEDAP 599
           + NKVH F   D  HP    +R  L  ++E++A  G +  D+P
Sbjct: 749 VNNKVHVFKADDVSHPQVIAIRKKLDELMEKIARLGYVRTDSP 791



 Score =  201 bits (511), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 112/345 (32%), Positives = 189/345 (54%), Gaps = 3/345 (0%)

Query: 87  TTFLSNHLISMYFKCGSDVDARKVF-DKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNM 145
             FL N L+  Y  CG+  DAR++    I   N+ ++N ML+GY  LG +  A  LF  M
Sbjct: 38  AVFLQNTLLHAYLSCGALPDARRLLLTDIAHPNVITHNVMLNGYVKLGRLSDAVELFGRM 97

Query: 146 AERDVVSWNTMIIGYAKSGAVEEGLK-FYKVLRRFSISCNEFSFAGILTICVKLEELKLT 204
             RDV SWNT++ GY +S      L+ F  + R    S N F+FA  +  C  L E  L 
Sbjct: 98  PARDVASWNTLMSGYFQSQQYLASLESFVSMHRSGDSSPNAFTFAYAMKSCGALGERSLA 157

Query: 205 RQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKL 264
            Q+ G V   G   +  +++++VD + +CG +  A RLF       +    +M+ GY K 
Sbjct: 158 LQLLGMVQKFGSQDDSDVAAALVDMFVRCGTVDLASRLFVRIKEPTIFCRNSMLVGYVKT 217

Query: 265 GDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCL 324
             ++ A +LF+ MPE++ VSW  +++  +++G  ++AL++   M    +R +  T++S L
Sbjct: 218 YGVDHALELFDSMPERDVVSWNMMVSALSQSGRVREALDMVVDMQSKGVRLDSTTYTSSL 277

Query: 325 CACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENS 384
            ACA + SL+ GKQ+H  +IR     +  V S+L+++Y+KCGC  + + VF+   ++ N+
Sbjct: 278 TACARLSSLRWGKQLHAQVIRNLPCIDPYVASALVELYAKCGCFKEAKGVFNSLHDR-NN 336

Query: 385 MLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNAC 429
           + W  +I+   QHG   +++ LF+ M    +  D+  LA +++ C
Sbjct: 337 VAWTVLIAGFLQHGCFTESVELFNQMRAELMTLDQFALATLISGC 381



 Score =  161 bits (408), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 96/395 (24%), Positives = 192/395 (48%), Gaps = 37/395 (9%)

Query: 11  NRKNLPNNCLIQSFLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKL 70
           +R N+    LI  FL     G  +E++   + +    + L    LA ++  C     L L
Sbjct: 333 DRNNVAWTVLIAGFLQ---HGCFTESVELFNQMRAELMTLDQFALATLISGCCSRMDLCL 389

Query: 71  GKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYA 130
           G+++H  L L   +     +SN LISMY KC +   A  +F  +  K++ S+ +M++ ++
Sbjct: 390 GRQLH-SLCLKSGQIQAVVVSNSLISMYAKCDNLQSAESIFRFMNEKDIVSWTSMITAHS 448

Query: 131 NLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKV-LRRFSISCNEFSFA 189
            +G +  AR  FD M+ ++V++WN M+  Y + GA E+GL+ Y V L    +  +  ++ 
Sbjct: 449 QVGNIAKAREFFDGMSTKNVITWNAMLGAYIQHGAEEDGLRMYNVMLSEKDVRPDWVTYV 508

Query: 190 GILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDAR 249
            +   C  L   KL  Q+ G+ +  G + +  ++++++  Y+KCG + +AR++FD  + +
Sbjct: 509 TLFKGCADLGANKLGDQIIGRTVKVGLILDTSVANAVITMYSKCGRILEARKVFDFLNVK 568

Query: 250 DVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMM 309
           D+++W  M++G                               Y+++G+G++A+E+F  ++
Sbjct: 569 DIVSWNAMITG-------------------------------YSQHGMGKQAIEIFDDIL 597

Query: 310 ILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRT-NFRSNTIVMSSLIDMYSKCGCL 368
               +P+  ++ + L  C+    ++ GK     + R  N        S ++D+  + G L
Sbjct: 598 KRGAKPDYISYVAVLSGCSHSGLVQEGKSYFDMMKRVHNISPGLEHFSCMVDLLGRAGHL 657

Query: 369 NDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQA 403
            + + + D    K  + +W  ++SA   HG +E A
Sbjct: 658 TEAKDLIDEMPMKPTAEVWGALLSACKIHGNNELA 692



 Score =  122 bits (306), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 102/388 (26%), Positives = 173/388 (44%), Gaps = 40/388 (10%)

Query: 187 SFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDET 246
           +FA  L  C     L   R +HG+++  G  S V + ++++ AY  CG L DARRL    
Sbjct: 6   AFADALRSCGARGALAGARALHGRLVAVGLASAVFLQNTLLHAYLSCGALPDARRLLLTD 65

Query: 247 DAR-DVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELF 305
            A  +V+T   M++GY KLG +  A +LF  MP ++  SW TL++GY ++     +LE F
Sbjct: 66  IAHPNVITHNVMLNGYVKLGRLSDAVELFGRMPARDVASWNTLMSGYFQSQQYLASLESF 125

Query: 306 TRM-MILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSK 364
             M       PN  TF+  + +C ++       Q+ G + +   + ++ V ++L+DM+ +
Sbjct: 126 VSMHRSGDSSPNAFTFAYAMKSCGALGERSLALQLLGMVQKFGSQDDSDVAAALVDMFVR 185

Query: 365 CGCLNDGRQVF----DLTDNKENSML--------------------------WNTMISAL 394
           CG ++   ++F    + T    NSML                          WN M+SAL
Sbjct: 186 CGTVDLASRLFVRIKEPTIFCRNSMLVGYVKTYGVDHALELFDSMPERDVVSWNMMVSAL 245

Query: 395 TQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPN 454
           +Q G   +A+ +  DM    V+ D  T    L AC     ++ G      +  +L  I  
Sbjct: 246 SQSGRVREALDMVVDMQSKGVRLDSTTYTSSLTACARLSSLRWGKQLHAQVIRNLPCIDP 305

Query: 455 QEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQL- 513
               A L+EL A+ GC  +       + ++ ++  W  L      HG      ++ +Q+ 
Sbjct: 306 YVASA-LVELYAKCGCFKEAKGVFNSL-HDRNNVAWTVLIAGFLQHGCFTESVELFNQMR 363

Query: 514 -----IDQNPQSSATHGLLSSIYSALGK 536
                +DQ   ++   G  S +   LG+
Sbjct: 364 AELMTLDQFALATLISGCCSRMDLCLGR 391


>gi|449488311|ref|XP_004157997.1| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
           mitochondrial-like [Cucumis sativus]
          Length = 785

 Score =  325 bits (833), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 185/568 (32%), Positives = 293/568 (51%), Gaps = 72/568 (12%)

Query: 92  NHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVV 151
           N +++ YF+     +A+ +FDK+  +N  S+N ++SGY N GM+  AR +FD M ER+VV
Sbjct: 133 NSIVAGYFQNKRPQEAQNMFDKMSERNTISWNGLVSGYINNGMINEAREVFDRMPERNVV 192

Query: 152 SWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQV 211
           SW  M+ GY K G + E    +  +   ++        G+L      E  +L   +  + 
Sbjct: 193 SWTAMVRGYVKEGMISEAETLFWQMPEKNVVSWTVMLGGLLQEGRIDEACRLFDMMPEK- 251

Query: 212 LVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSG----------- 260
                  +VV  ++++  Y + G L +AR LFDE   R+V++WTTM++G           
Sbjct: 252 -------DVVTRTNMIGGYCQVGRLVEARMLFDEMPRRNVVSWTTMITGYVQNQQVDIAR 304

Query: 261 --------------------YAKLGDMESASKLFNEMP---------------------- 278
                               Y   G ++ AS+LFN MP                      
Sbjct: 305 KLFEVMPEKNEVSWTAMLKGYTNCGRLDEASELFNAMPIKSVVACNAMILCFGQNGEVPK 364

Query: 279 ---------EKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACAS 329
                    EK+  +W+ +I  Y R GL   ALELF  M    IRPN  +  S L  CA 
Sbjct: 365 ARQVFDQMREKDEGTWSAMIKVYERKGLELDALELFRMMQREGIRPNFPSLISVLSVCAG 424

Query: 330 IVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNT 389
           + +L HG+++H  L+R+ F  +  V S L+ MY KCG L   +QVFD    K + ++WN+
Sbjct: 425 LANLDHGREIHAQLVRSQFDLDVYVASVLLSMYIKCGNLAKAKQVFDRFAVK-DVVMWNS 483

Query: 390 MISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDL 449
           +I+   QHG   +A+R+FHDM  S + PD +T   +L+AC+++G V++GL  F SM    
Sbjct: 484 IITGYAQHGLGVEALRVFHDMHFSGIMPDDVTFVGVLSACSYTGNVKKGLEIFNSMETKY 543

Query: 450 GIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKV 509
            +    EH+AC+++LL +AG  ++ M+ +EKMP E D+ +W AL G CR H  +D+    
Sbjct: 544 QVEQKIEHYACMVDLLGRAGKLNEAMDLIEKMPMEADAIIWGALLGACRTHMKLDLAEVA 603

Query: 510 VDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHA 569
             +L+   P+++    LLS+IY++ G+   V ++R+ + +R+  K    SWI +E KVH 
Sbjct: 604 AKKLLVLEPKNAGPFILLSNIYASQGRWDDVAELRRNMRDRRVSKYPGCSWIVVEKKVHK 663

Query: 570 FSVSDSL-HPMRDVLYSVLEQLAGQMGE 596
           F+  DS  HP    +  +LE L+G + E
Sbjct: 664 FTGGDSSGHPEHSEINRILEWLSGLLRE 691



 Score =  154 bits (388), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 103/362 (28%), Positives = 168/362 (46%), Gaps = 63/362 (17%)

Query: 92  NHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVV 151
           N LI+ Y + G    AR VFD++  KN+ S+N++++GY      + A+N+FD M+ER+ +
Sbjct: 102 NSLITRYSRLGQIEKARVVFDEMRDKNIISWNSIVAGYFQNKRPQEAQNMFDKMSERNTI 161

Query: 152 SWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQ----- 206
           SWN ++ GY  +G + E  + +  +   ++        G +   +  E   L  Q     
Sbjct: 162 SWNGLVSGYINNGMINEAREVFDRMPERNVVSWTAMVRGYVKEGMISEAETLFWQMPEKN 221

Query: 207 -VHGQVLVTGFL-----------------SNVVISSSIVDAYAKCGELSDARRLFDETDA 248
            V   V++ G L                  +VV  ++++  Y + G L +AR LFDE   
Sbjct: 222 VVSWTVMLGGLLQEGRIDEACRLFDMMPEKDVVTRTNMIGGYCQVGRLVEARMLFDEMPR 281

Query: 249 RDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRM 308
           R+V++WTTM++GY +   ++ A KLF  MPEKN VSWT ++ GYT  G   +A ELF  M
Sbjct: 282 RNVVSWTTMITGYVQNQQVDIARKLFEVMPEKNEVSWTAMLKGYTNCGRLDEASELFNAM 341

Query: 309 MILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCL 368
            I             + AC                            +++I  + + G +
Sbjct: 342 PI-----------KSVVAC----------------------------NAMILCFGQNGEV 362

Query: 369 NDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNA 428
              RQVFD    K+    W+ MI    + G +  A+ LF  M R  ++P+  +L  +L+ 
Sbjct: 363 PKARQVFDQMREKDEGT-WSAMIKVYERKGLELDALELFRMMQREGIRPNFPSLISVLSV 421

Query: 429 CT 430
           C 
Sbjct: 422 CA 423



 Score = 92.0 bits (227), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 84/351 (23%), Positives = 150/351 (42%), Gaps = 59/351 (16%)

Query: 211 VLVTGFLSNVVIS-SSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMES 269
           VL   + SN +IS +S++  Y++ G++  AR +FDE   +++++W ++V+GY +    + 
Sbjct: 88  VLNRFYCSNFIISRNSLITRYSRLGQIEKARVVFDEMRDKNIISWNSIVAGYFQNKRPQE 147

Query: 270 ASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACAS 329
           A  +F++M E+N +SW  L++GY  NG+  +A E+F RM      P +            
Sbjct: 148 AQNMFDKMSERNTISWNGLVSGYINNGMINEAREVFDRM------PER------------ 189

Query: 330 IVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNT 389
                                N +  ++++  Y K G +++   +F     K N + W  
Sbjct: 190 ---------------------NVVSWTAMVRGYVKEGMISEAETLFWQMPEK-NVVSWTV 227

Query: 390 MISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDL 449
           M+  L Q G  ++A RLF DM+    + D +T   ++      G + E    F+ M    
Sbjct: 228 MLGGLLQEGRIDEACRLF-DMM---PEKDVVTRTNMIGGYCQVGRLVEARMLFDEMPRR- 282

Query: 450 GIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGR-K 508
               N      +I    Q    D      E MP E +   W A+     + G  + GR  
Sbjct: 283 ----NVVSWTTMITGYVQNQQVDIARKLFEVMP-EKNEVSWTAM-----LKGYTNCGRLD 332

Query: 509 VVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAIS 559
              +L +  P  S      +++    G+   V K RQ+ ++ + K E   S
Sbjct: 333 EASELFNAMPIKSVV--ACNAMILCFGQNGEVPKARQVFDQMREKDEGTWS 381



 Score = 69.3 bits (168), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 41/148 (27%), Positives = 81/148 (54%), Gaps = 5/148 (3%)

Query: 30  KGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTF 89
           KG   +A+    ++ + GIR    +L  +L  CA   +L  G+ +H  L  +Q      +
Sbjct: 390 KGLELDALELFRMMQREGIRPNFPSLISVLSVCAGLANLDHGREIHAQLVRSQFDL-DVY 448

Query: 90  LSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERD 149
           +++ L+SMY KCG+   A++VFD+  VK++  +N++++GYA  G+   A  +F +M    
Sbjct: 449 VASVLLSMYIKCGNLAKAKQVFDRFAVKDVVMWNSIITGYAQHGLGVEALRVFHDMHFSG 508

Query: 150 VVSWNTMIIGY----AKSGAVEEGLKFY 173
           ++  +   +G     + +G V++GL+ +
Sbjct: 509 IMPDDVTFVGVLSACSYTGNVKKGLEIF 536


>gi|147767942|emb|CAN73397.1| hypothetical protein VITISV_016435 [Vitis vinifera]
          Length = 929

 Score =  325 bits (833), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 177/574 (30%), Positives = 297/574 (51%), Gaps = 47/574 (8%)

Query: 35  EAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHL 94
           EA+S    +   G++  + T+A  +  C     L+ G+ +H +    +       + N L
Sbjct: 345 EALSVFRKMVLEGVKPNSITIASAVSACTNLSLLRHGREIHGYCIKVEELDSDLLVGNSL 404

Query: 95  ISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMA----ERDV 150
           +  Y KC S   AR+ F  I   +L S+N ML+GYA  G  + A  L   M     E D+
Sbjct: 405 VDYYAKCRSVEVARRKFGMIKQTDLVSWNAMLAGYALRGSHEEAIELLSEMKFQGIEPDI 464

Query: 151 VSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQ 210
           ++WN ++ G+ + G  +  L+F++ +    +  N  + +G L  C ++  LKL +++HG 
Sbjct: 465 ITWNGLVTGFTQYGDGKAALEFFQRMHSMGMDPNTTTISGALAACGQVRNLKLGKEIHGY 524

Query: 211 VLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESA 270
           VL      +  + S+++  Y+ C  L  A  +F E   RDV+ W +++S  A+       
Sbjct: 525 VLRNHIELSTGVGSALISMYSGCDSLEVACSVFSELSTRDVVVWNSIISACAQ------- 577

Query: 271 SKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASI 330
                                   +G    AL+L   M +  +  N  T  S L AC+ +
Sbjct: 578 ------------------------SGRSVNALDLLREMNLSNVEVNTVTMVSALPACSKL 613

Query: 331 VSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTM 390
            +L+ GK++H F+IR    +   +++SLIDMY +CG +   R++FDL   ++  + WN M
Sbjct: 614 AALRQGKEIHQFIIRCGLDTCNFILNSLIDMYGRCGSIQKSRRIFDLMPQRD-LVSWNVM 672

Query: 391 ISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLG 450
           IS    HG+   A+ LF       +KP+ IT   +L+AC+HSGL++EG  YF+ M  +  
Sbjct: 673 ISVYGMHGFGMDAVNLFQXFRTMGLKPNHITFTNLLSACSHSGLIEEGWKYFKMMKTEYA 732

Query: 451 IIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVV 510
           + P  E +AC+++LL++AG  ++ +  +EKMP+E ++ +W +L G CRIH N D+     
Sbjct: 733 MDPAVEQYACMVDLLSRAGQFNETLEFIEKMPFEPNAAVWGSLLGACRIHCNPDLAEYAA 792

Query: 511 DQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAF 570
             L +  PQSS  + L+++IYSA G+     K+R L+ ER   K    SWIE++ K+H+F
Sbjct: 793 RYLFELEPQSSGNYVLMANIYSAAGRWEDAAKIRCLMKERGVTKPPGCSWIEVKRKLHSF 852

Query: 571 SVSDSLHPMRDVLYSVLEQLAGQMGEDAPSLDAD 604
            V D+ HP+       +EQ++G+ G+    LD D
Sbjct: 853 VVGDTSHPL-------MEQISGKDGK----LDVD 875



 Score =  223 bits (568), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 151/516 (29%), Positives = 252/516 (48%), Gaps = 49/516 (9%)

Query: 31  GQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFL 90
           G   E I    L+   G+R        + + C+E K+ ++GK V+ ++ L+      + +
Sbjct: 169 GDYEETIKLFYLMVNEGVRPDHFVFPKVFKACSELKNYRVGKDVYDYM-LSIGFEGNSCV 227

Query: 91  SNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNM----A 146
              ++ M+ KCG    AR+ F++I  K++F +N M+SGY + G  K A     +M     
Sbjct: 228 KGSILDMFIKCGRMDIARRFFEEIEFKDVFMWNIMVSGYTSKGEFKKALKCISDMKLSGV 287

Query: 147 ERDVVSWNTMIIGYAKSGAVEE---------GLKFYK----------------------- 174
           + D V+WN +I GYA+SG  EE         GLK +K                       
Sbjct: 288 KPDQVTWNAIISGYAQSGQFEEASKYFLEMGGLKDFKPNVVSWTALIAGSEQNGYDFEAL 347

Query: 175 -VLRRF---SISCNEFSFAGILTICVKLEELKLTRQVHGQVL-VTGFLSNVVISSSIVDA 229
            V R+     +  N  + A  ++ C  L  L+  R++HG  + V    S++++ +S+VD 
Sbjct: 348 SVFRKMVLEGVKPNSITIASAVSACTNLSLLRHGREIHGYCIKVEELDSDLLVGNSLVDY 407

Query: 230 YAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMP----EKNPVSW 285
           YAKC  +  ARR F      D+++W  M++GYA  G  E A +L +EM     E + ++W
Sbjct: 408 YAKCRSVEVARRKFGMIKQTDLVSWNAMLAGYALRGSHEEAIELLSEMKFQGIEPDIITW 467

Query: 286 TTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIR 345
             L+ G+T+ G G+ ALE F RM  + + PN  T S  L AC  + +LK GK++HG+++R
Sbjct: 468 NGLVTGFTQYGDGKAALEFFQRMHSMGMDPNTTTISGALAACGQVRNLKLGKEIHGYVLR 527

Query: 346 TNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIR 405
            +   +T V S+LI MYS C  L     VF     ++  ++WN++ISA  Q G    A+ 
Sbjct: 528 NHIELSTGVGSALISMYSGCDSLEVACSVFSELSTRD-VVVWNSIISACAQSGRSVNALD 586

Query: 406 LFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELL 465
           L  +M  S+V+ + +T+   L AC+    +++G    + +    G+         LI++ 
Sbjct: 587 LLREMNLSNVEVNTVTMVSALPACSKLAALRQGKEIHQFIIR-CGLDTCNFILNSLIDMY 645

Query: 466 AQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHG 501
            + G   +     + MP + D   WN +  V  +HG
Sbjct: 646 GRCGSIQKSRRIFDLMP-QRDLVSWNVMISVYGMHG 680



 Score =  205 bits (521), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 129/443 (29%), Positives = 212/443 (47%), Gaps = 75/443 (16%)

Query: 53  ETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFD 112
           E  A ILQ+C +  +L+LG +VH  L +                     G DV       
Sbjct: 90  EIYASILQKCRKLYNLRLGFQVHAQLVVN--------------------GVDVCE----- 124

Query: 113 KIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKF 172
                  F  + +L  Y   G ++ AR +FD M+ER+V SW  ++  Y   G  EE +K 
Sbjct: 125 -------FLGSRLLEVYCQTGCVEDARRMFDKMSERNVFSWTAIMEMYCGLGDYEETIKL 177

Query: 173 YKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAK 232
           + ++    +  + F F  +   C +L+  ++ + V+  +L  GF  N  +  SI+D + K
Sbjct: 178 FYLMVNEGVRPDHFVFPKVFKACSELKNYRVGKDVYDYMLSIGFEGNSCVKGSILDMFIK 237

Query: 233 CGELSDARRLFDETDARDV-----------------------------------LTWTTM 257
           CG +  ARR F+E + +DV                                   +TW  +
Sbjct: 238 CGRMDIARRFFEEIEFKDVFMWNIMVSGYTSKGEFKKALKCISDMKLSGVKPDQVTWNAI 297

Query: 258 VSGYAKLGDMESASKLFNEMP-----EKNPVSWTTLIAGYTRNGLGQKALELFTRMMILR 312
           +SGYA+ G  E ASK F EM      + N VSWT LIAG  +NG   +AL +F +M++  
Sbjct: 298 ISGYAQSGQFEEASKYFLEMGGLKDFKPNVVSWTALIAGSEQNGYDFEALSVFRKMVLEG 357

Query: 313 IRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRT-NFRSNTIVMSSLIDMYSKCGCLNDG 371
           ++PN  T +S + AC ++  L+HG+++HG+ I+     S+ +V +SL+D Y+KC  +   
Sbjct: 358 VKPNSITIASAVSACTNLSLLRHGREIHGYCIKVEELDSDLLVGNSLVDYYAKCRSVEVA 417

Query: 372 RQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTH 431
           R+ F +   + + + WN M++     G  E+AI L  +M    ++PD IT   ++   T 
Sbjct: 418 RRKFGMI-KQTDLVSWNAMLAGYALRGSHEEAIELLSEMKFQGIEPDIITWNGLVTGFTQ 476

Query: 432 SGLVQEGLTYFESMTHDLGIIPN 454
            G  +  L +F+ M H +G+ PN
Sbjct: 477 YGDGKAALEFFQRM-HSMGMDPN 498



 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 84/297 (28%), Positives = 139/297 (46%), Gaps = 32/297 (10%)

Query: 188 FAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETD 247
           +A IL  C KL  L+L  QVH Q++V G      + S +++ Y + G + DARR+     
Sbjct: 92  YASILQKCRKLYNLRLGFQVHAQLVVNGVDVCEFLGSRLLEVYCQTGCVEDARRM----- 146

Query: 248 ARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTR 307
                                     F++M E+N  SWT ++  Y   G  ++ ++LF  
Sbjct: 147 --------------------------FDKMSERNVFSWTAIMEMYCGLGDYEETIKLFYL 180

Query: 308 MMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGC 367
           M+   +RP+   F     AC+ + + + GK V+ +++   F  N+ V  S++DM+ KCG 
Sbjct: 181 MVNEGVRPDHFVFPKVFKACSELKNYRVGKDVYDYMLSIGFEGNSCVKGSILDMFIKCGR 240

Query: 368 LNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILN 427
           ++  R+ F+  + K+   +WN M+S  T  G  ++A++   DM  S VKPD++T   I++
Sbjct: 241 MDIARRFFEEIEFKD-VFMWNIMVSGYTSKGEFKKALKCISDMKLSGVKPDQVTWNAIIS 299

Query: 428 ACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYE 484
               SG  +E   YF  M       PN      LI    Q G   + ++   KM  E
Sbjct: 300 GYAQSGQFEEASKYFLEMGGLKDFKPNVVSWTALIAGSEQNGYDFEALSVFRKMVLE 356



 Score = 73.2 bits (178), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 48/200 (24%), Positives = 90/200 (45%), Gaps = 3/200 (1%)

Query: 294 RNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTI 353
           RNG+   A  L + M +         ++S L  C  + +L+ G QVH  L+         
Sbjct: 66  RNGVLNNAAMLLSSMDLTNPDECIEIYASILQKCRKLYNLRLGFQVHAQLVVNGVDVCEF 125

Query: 354 VMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRS 413
           + S L+++Y + GC+ D R++FD    + N   W  ++      G  E+ I+LF+ MV  
Sbjct: 126 LGSRLLEVYCQTGCVEDARRMFDKMSER-NVFSWTAIMEMYCGLGDYEETIKLFYLMVNE 184

Query: 414 SVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQ 473
            V+PD      +  AC+     + G   ++ M   +G   N      ++++  + G  D 
Sbjct: 185 GVRPDHFVFPKVFKACSELKNYRVGKDVYDYML-SIGFEGNSCVKGSILDMFIKCGRMDI 243

Query: 474 LMNQLEKMPYEHDSYLWNAL 493
                E++ ++ D ++WN +
Sbjct: 244 ARRFFEEIEFK-DVFMWNIM 262


>gi|15128441|dbj|BAB62625.1| P0402A09.8 [Oryza sativa Japonica Group]
 gi|20804430|dbj|BAB92127.1| P0455C04.2 [Oryza sativa Japonica Group]
          Length = 1122

 Score =  325 bits (833), Expect = 5e-86,   Method: Compositional matrix adjust.
 Identities = 174/547 (31%), Positives = 287/547 (52%), Gaps = 71/547 (12%)

Query: 118 NLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLR 177
           ++F  N +L  Y   G++  AR +F  M ++D V++N M++G +K G   + L+ +  +R
Sbjct: 169 HVFVCNTLLDAYCKHGLLAAARRVFLEMHDKDAVTYNAMMMGCSKEGLHTQALQLFAAMR 228

Query: 178 RFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELS 237
           R  I    F+F+ ILT+   +  L L  QVH  VL +  + NV +++S++D Y+KC  L 
Sbjct: 229 RAGIPATHFTFSSILTVAAGMAHLLLGHQVHALVLRSTSVLNVFVNNSLLDFYSKCDCLD 288

Query: 238 DAR-------------------------------RLFDETDA----RDVLTWTTMVS--- 259
           D R                               RLF E       R VL + TM+S   
Sbjct: 289 DMRRLFDEMPERDNVSYNVIIAAYAWNQCAATVLRLFREMQKLGFDRQVLPYATMLSVAG 348

Query: 260 --------------------------------GYAKLGDMESASKLFNEMPEKNPVSWTT 287
                                            Y+K G +++A   F+   EK+ +SWT 
Sbjct: 349 SLPDVHIGKQIHAQLVLLGLASEDLLGNALIDMYSKCGMLDAAKSNFSNRSEKSAISWTA 408

Query: 288 LIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTN 347
           LI GY +NG  ++AL+LF+ M    +RP++ TFSS + A +S+  +  G+Q+H +LIR+ 
Sbjct: 409 LITGYVQNGQHEEALQLFSDMRRAGLRPDRATFSSIIKASSSLAMIGLGRQLHSYLIRSG 468

Query: 348 FRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLF 407
           ++S+    S L+DMY+KCGCL++  + FD    + NS+ WN +ISA   +G  + AI++F
Sbjct: 469 YKSSVFSGSVLVDMYAKCGCLDEALRTFDEMPER-NSISWNAVISAYAHYGEAKNAIKMF 527

Query: 408 HDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQ 467
             M+     PD +T   +L AC+H+GL  E + YF  M H   I P +EH+AC+I+ L +
Sbjct: 528 EGMLHCGFNPDSVTFLSVLAACSHNGLADECMKYFHLMKHQYSISPWKEHYACVIDTLGR 587

Query: 468 AGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLL 527
            GC  Q+   L +MP++ D  +W ++   CRIHGN ++ R   D+L    P  +  + +L
Sbjct: 588 VGCFSQVQKMLVEMPFKADPIIWTSILHSCRIHGNQELARVAADKLFGMEPTDATPYVIL 647

Query: 528 SSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVL 587
           S+IY+  G+      V++++ +R  +KE   SW+EI+ K+++F+ +D   PM D +   L
Sbjct: 648 SNIYARAGQWEDAACVKKIMRDRGVRKESGYSWVEIKQKIYSFASNDLTSPMIDEIKDEL 707

Query: 588 EQLAGQM 594
           ++L  +M
Sbjct: 708 DRLYKEM 714



 Score =  162 bits (409), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 108/405 (26%), Positives = 187/405 (46%), Gaps = 65/405 (16%)

Query: 89  FLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAER 148
           F+ N L+  Y K G    AR+VF ++  K+  +YN M+                      
Sbjct: 171 FVCNTLLDAYCKHGLLAAARRVFLEMHDKDAVTYNAMM---------------------- 208

Query: 149 DVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVH 208
                    +G +K G   + L+ +  +RR  I    F+F+ ILT+   +  L L  QVH
Sbjct: 209 ---------MGCSKEGLHTQALQLFAAMRRAGIPATHFTFSSILTVAAGMAHLLLGHQVH 259

Query: 209 GQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDME 268
             VL +  + NV +++S++D Y+KC  L D RRLFDE   RD +++  +++ YA      
Sbjct: 260 ALVLRSTSVLNVFVNNSLLDFYSKCDCLDDMRRLFDEMPERDNVSYNVIIAAYA------ 313

Query: 269 SASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACA 328
                           W         N      L LF  M  L        +++ L    
Sbjct: 314 ----------------W---------NQCAATVLRLFREMQKLGFDRQVLPYATMLSVAG 348

Query: 329 SIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWN 388
           S+  +  GKQ+H  L+     S  ++ ++LIDMYSKCG L+  +  F    ++++++ W 
Sbjct: 349 SLPDVHIGKQIHAQLVLLGLASEDLLGNALIDMYSKCGMLDAAKSNFS-NRSEKSAISWT 407

Query: 389 TMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHD 448
            +I+   Q+G  E+A++LF DM R+ ++PD+ T + I+ A +   ++  G      +   
Sbjct: 408 ALITGYVQNGQHEEALQLFSDMRRAGLRPDRATFSSIIKASSSLAMIGLGRQLHSYLIRS 467

Query: 449 LGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNAL 493
            G   +    + L+++ A+ GC D+ +   ++MP E +S  WNA+
Sbjct: 468 -GYKSSVFSGSVLVDMYAKCGCLDEALRTFDEMP-ERNSISWNAV 510



 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 87/306 (28%), Positives = 148/306 (48%), Gaps = 41/306 (13%)

Query: 107 ARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAV 166
           AR +FD++P KN+FS N +LS Y++ G +  A++LF +   R+  +W  M+  +A +G  
Sbjct: 62  ARAMFDQMPHKNIFSLNLILSAYSSSGDLPAAQHLFLSSPHRNATTWTIMMRAHAAAGRT 121

Query: 167 EEGLKFYKVLRRFSISCNEFSFAGILTI--CVKLEELKLTRQVHGQVLVTGFLSNVVISS 224
            + L  ++ +    +  +  +   +L +  C           +H   +  G  ++V + +
Sbjct: 122 SDALSLFRAMLGEGVIPDRVTVTTVLNLPGCT-------VPSLHPFAIKFGLDTHVFVCN 174

Query: 225 SIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVS 284
           +++DAY K G L+ ARR+F E   +D +T+  M+ G +K                     
Sbjct: 175 TLLDAYCKHGLLAAARRVFLEMHDKDAVTYNAMMMGCSK--------------------- 213

Query: 285 WTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLI 344
                      GL  +AL+LF  M    I     TFSS L   A +  L  G QVH  ++
Sbjct: 214 ----------EGLHTQALQLFAAMRRAGIPATHFTFSSILTVAAGMAHLLLGHQVHALVL 263

Query: 345 RTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAI 404
           R+    N  V +SL+D YSKC CL+D R++FD    ++N + +N +I+A   +      +
Sbjct: 264 RSTSVLNVFVNNSLLDFYSKCDCLDDMRRLFDEMPERDN-VSYNVIIAAYAWNQCAATVL 322

Query: 405 RLFHDM 410
           RLF +M
Sbjct: 323 RLFREM 328



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 98/394 (24%), Positives = 171/394 (43%), Gaps = 83/394 (21%)

Query: 44  AQRGIRLPAETLAF--ILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKC 101
           A R   +PA    F  IL   A    L LG +VH  L L        F++N L+  Y KC
Sbjct: 226 AMRRAGIPATHFTFSSILTVAAGMAHLLLGHQVHA-LVLRSTSVLNVFVNNSLLDFYSKC 284

Query: 102 GSDVDARKVFDKIPVKNLFSYNNMLSGYA------------------------------- 130
               D R++FD++P ++  SYN +++ YA                               
Sbjct: 285 DCLDDMRRLFDEMPERDNVSYNVIIAAYAWNQCAATVLRLFREMQKLGFDRQVLPYATML 344

Query: 131 ---------NLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAV--------------- 166
                    ++G   HA+ +   +A  D++  N +I  Y+K G +               
Sbjct: 345 SVAGSLPDVHIGKQIHAQLVLLGLASEDLLG-NALIDMYSKCGMLDAAKSNFSNRSEKSA 403

Query: 167 ----------------EEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQ 210
                           EE L+ +  +RR  +  +  +F+ I+     L  + L RQ+H  
Sbjct: 404 ISWTALITGYVQNGQHEEALQLFSDMRRAGLRPDRATFSSIIKASSSLAMIGLGRQLHSY 463

Query: 211 VLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESA 270
           ++ +G+ S+V   S +VD YAKCG L +A R FDE   R+ ++W  ++S YA  G+ ++A
Sbjct: 464 LIRSGYKSSVFSGSVLVDMYAKCGCLDEALRTFDEMPERNSISWNAVISAYAHYGEAKNA 523

Query: 271 SKLFNEMPE--KNP--VSWTTLIAGYTRNGLGQKALELFTRMM-ILRIRPNQHTFSSCLC 325
            K+F  M     NP  V++ +++A  + NGL  + ++ F  M     I P +  ++   C
Sbjct: 524 IKMFEGMLHCGFNPDSVTFLSVLAACSHNGLADECMKYFHLMKHQYSISPWKEHYA---C 580

Query: 326 ACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLI 359
              ++  +    QV   L+   F+++ I+ +S++
Sbjct: 581 VIDTLGRVGCFSQVQKMLVEMPFKADPIIWTSIL 614



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 66/263 (25%), Positives = 122/263 (46%), Gaps = 14/263 (5%)

Query: 234 GELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYT 293
           G L  AR +FD+   +++ +   ++S Y+  GD+ +A  LF   P +N  +WT ++  + 
Sbjct: 57  GHLHRARAMFDQMPHKNIFSLNLILSAYSSSGDLPAAQHLFLSSPHRNATTWTIMMRAHA 116

Query: 294 RNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTI 353
             G    AL LF  M+   + P++ T ++ L      V       +H F I+    ++  
Sbjct: 117 AAGRTSDALSLFRAMLGEGVIPDRVTVTTVLNLPGCTV-----PSLHPFAIKFGLDTHVF 171

Query: 354 VMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRS 413
           V ++L+D Y K G L   R+VF L  + ++++ +N M+   ++ G   QA++LF  M R+
Sbjct: 172 VCNTLLDAYCKHGLLAAARRVF-LEMHDKDAVTYNAMMMGCSKEGLHTQALQLFAAMRRA 230

Query: 414 SVKPDKITLAVILNAC---THSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGC 470
            +     T + IL       H  L  +        T  L +  N      L++  ++  C
Sbjct: 231 GIPATHFTFSSILTVAAGMAHLLLGHQVHALVLRSTSVLNVFVNNS----LLDFYSKCDC 286

Query: 471 SDQLMNQLEKMPYEHDSYLWNAL 493
            D +    ++MP E D+  +N +
Sbjct: 287 LDDMRRLFDEMP-ERDNVSYNVI 308



 Score = 81.6 bits (200), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 68/277 (24%), Positives = 138/277 (49%), Gaps = 16/277 (5%)

Query: 3   SNFSPRGINRKNLPNNCLIQSFLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQC 62
           SNFS R   +  +    LI  +   +  GQ  EA+     + + G+R    T + I++  
Sbjct: 393 SNFSNRS-EKSAISWTALITGY---VQNGQHEEALQLFSDMRRAGLRPDRATFSSIIKAS 448

Query: 63  AESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSY 122
           +    + LG+++H +L  +  K+ + F  + L+ MY KCG   +A + FD++P +N  S+
Sbjct: 449 SSLAMIGLGRQLHSYLIRSGYKS-SVFSGSVLVDMYAKCGCLDEALRTFDEMPERNSISW 507

Query: 123 NNMLSGYANLGMMKHARNLFDNMAE----RDVVSWNTMIIGYAKSGAVEEGLKFYKVLR- 177
           N ++S YA+ G  K+A  +F+ M       D V++ +++   + +G  +E +K++ +++ 
Sbjct: 508 NAVISAYAHYGEAKNAIKMFEGMLHCGFNPDSVTFLSVLAACSHNGLADECMKYFHLMKH 567

Query: 178 RFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELS 237
           ++SIS  +  +A ++     L  +    QV   ++   F ++ +I +SI+ +    G   
Sbjct: 568 QYSISPWKEHYACVID---TLGRVGCFSQVQKMLVEMPFKADPIIWTSILHSCRIHGNQE 624

Query: 238 DARRLFDE---TDARDVLTWTTMVSGYAKLGDMESAS 271
            AR   D+    +  D   +  + + YA+ G  E A+
Sbjct: 625 LARVAADKLFGMEPTDATPYVILSNIYARAGQWEDAA 661


>gi|224065851|ref|XP_002301973.1| predicted protein [Populus trichocarpa]
 gi|222843699|gb|EEE81246.1| predicted protein [Populus trichocarpa]
          Length = 716

 Score =  325 bits (832), Expect = 5e-86,   Method: Compositional matrix adjust.
 Identities = 180/569 (31%), Positives = 307/569 (53%), Gaps = 8/569 (1%)

Query: 32  QLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLS 91
                I     +  +GI   +  L  +++ CA   +L+ GK++H    ++     +  LS
Sbjct: 54  HFGHVIRVFSYMLTQGIVPDSRVLPTVIKTCAALSALQTGKQMHCFALVSGLGLDSVVLS 113

Query: 92  NHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLF----DNMAE 147
           + L+ MY +     DAR VFDK+P   + + + ++S +A  G +K  + LF    D   E
Sbjct: 114 S-LLHMYVQFDHLKDARNVFDKLPQPGVVTSSALISRFARKGRVKETKELFYQTRDLGVE 172

Query: 148 RDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQV 207
            ++VSWN MI G+ +SG+  + +  ++ +    +  +  S + +L     L+   +  Q+
Sbjct: 173 LNLVSWNGMISGFNRSGSYLDAVLMFQNMHLEGLKPDGTSVSSVLPAVGDLDMPLMGIQI 232

Query: 208 HGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDM 267
           H  V+  G   +  + S+++D Y KC   S+   +F+E D  DV     +V+G ++ G +
Sbjct: 233 HCYVIKQGLGPDKFVVSALIDMYGKCACASEMSGVFNEMDEVDVGACNALVTGLSRNGLV 292

Query: 268 ESASKLFNEMP--EKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLC 325
           ++A ++F +    + N VSWT++IA  ++NG   +ALELF  M I  ++PN  T    L 
Sbjct: 293 DNALEVFKQFKGMDLNVVSWTSMIASCSQNGKDMEALELFREMQIEGVKPNSVTIPCLLP 352

Query: 326 ACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSM 385
           AC +I +L HGK  H F +R    ++  V S+LIDMY+KCG +   R  FD+  N+ N +
Sbjct: 353 ACGNIAALLHGKAAHCFSLRNGIFNDVYVGSALIDMYAKCGRMLASRLCFDMMPNR-NLV 411

Query: 386 LWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESM 445
            WN++++    HG   +AI +F  M R   KPD ++   +L+ACT  GL +EG  YF+SM
Sbjct: 412 SWNSLMAGYAMHGKTFEAINIFELMQRCGQKPDHVSFTCVLSACTQGGLTEEGWFYFDSM 471

Query: 446 THDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDM 505
           + + G+    EH++C++ LL ++G  ++    +++MP+E DS +W AL   CR+H  +D+
Sbjct: 472 SRNHGVEARMEHYSCMVTLLGRSGRLEEAYAMIKQMPFEPDSCVWGALLSSCRVHNRVDL 531

Query: 506 GRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIEN 565
           G     ++ +  P++   + LLS+IY++      V+ VR ++  R  KK    SWIEI+N
Sbjct: 532 GEIAAKRVFELEPRNPGNYILLSNIYASKAMWVEVDMVRDMMRSRGLKKNPGYSWIEIKN 591

Query: 566 KVHAFSVSDSLHPMRDVLYSVLEQLAGQM 594
           KVH     DS HP    +   L +L  +M
Sbjct: 592 KVHMLLAGDSSHPQMPQIIEKLAKLTVEM 620


>gi|225454494|ref|XP_002276948.1| PREDICTED: pentatricopeptide repeat-containing protein At4g01030,
           mitochondrial-like [Vitis vinifera]
          Length = 913

 Score =  325 bits (832), Expect = 6e-86,   Method: Compositional matrix adjust.
 Identities = 187/590 (31%), Positives = 300/590 (50%), Gaps = 45/590 (7%)

Query: 48  IRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDA 107
           ++    T+  +LQ C +  +L   K++H ++      +  + L N LISMY K G    A
Sbjct: 230 LKAETATIVRVLQACGKMGALNAAKQIHGYVFRFGLDSDVS-LCNPLISMYSKNGKLELA 288

Query: 108 RKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMA----ERDVVSWNTMIIGYAKS 163
           R+VFD +  +N  S+N+M+S YA LG +  A +LF  +     + D+V+WN ++ G+   
Sbjct: 289 RRVFDSMENRNTSSWNSMISSYAALGFLNDAWSLFYELESSDMKPDIVTWNCLLSGHFLH 348

Query: 164 GAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVIS 223
           G  EE L   + ++      N  S   +L    +L  L + ++ HG VL  GF  +V + 
Sbjct: 349 GYKEEVLNILQRMQGEGFKPNSSSMTSVLQAISELGFLNMGKETHGYVLRNGFDCDVYVG 408

Query: 224 SSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEK--- 280
           +S++D Y K   L+ A+ +FD    R++  W ++VSGY+  G  E A +L N+M ++   
Sbjct: 409 TSLIDMYVKNHSLTSAQAVFDNMKNRNIFAWNSLVSGYSFKGMFEDALRLLNQMEKEGIK 468

Query: 281 ------------------------------------NPVSWTTLIAGYTRNGLGQKALEL 304
                                               N VSWT LI+G ++ G  + +L+ 
Sbjct: 469 PDLVTWNGMISGYAMWGCGKEALAVLHQTKSLGLTPNVVSWTALISGSSQAGNNRDSLKF 528

Query: 305 FTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSK 364
           F +M    + PN  + +  L ACAS+  L+ GK++H   IR  F  +  V ++LIDMYSK
Sbjct: 529 FAQMQQEGVMPNSASITCLLRACASLSLLQKGKEIHCLSIRNGFIEDVFVATALIDMYSK 588

Query: 365 CGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAV 424
              L +  +VF    NK  +  WN MI      G  ++AI +F++M +  V PD IT   
Sbjct: 589 SSSLKNAHKVFRRIQNKTLAS-WNCMIMGFAIFGLGKEAISVFNEMQKVGVGPDAITFTA 647

Query: 425 ILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYE 484
           +L+AC +SGL+ EG  YF+SM  D  I+P  EH+ C+++LL +AG  D+  + +  MP +
Sbjct: 648 LLSACKNSGLIGEGWKYFDSMITDYRIVPRLEHYCCMVDLLGRAGYLDEAWDLIHTMPLK 707

Query: 485 HDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVR 544
            D+ +W AL G CRIH N+         L    P +SA + L+ ++YS   +   ++ +R
Sbjct: 708 PDATIWGALLGSCRIHKNLKFAETAAKNLFKLEPNNSANYILMMNLYSIFNRWEDMDHLR 767

Query: 545 QLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQM 594
           +L+     +  Q  SWI+I  +VH FS  +  HP    +Y  L QL  +M
Sbjct: 768 ELMGAAGVRNRQVWSWIQINQRVHVFSSDEKPHPDAGKIYFELYQLVSEM 817



 Score =  184 bits (468), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 126/465 (27%), Positives = 215/465 (46%), Gaps = 40/465 (8%)

Query: 9   GINRKNLPNNCLIQSFLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSL 68
           G+ R  L  N  ++ F S  S G L   +     L  +G+   +E  +  L+ C     +
Sbjct: 92  GLPRNYLKWNSFVEEFKS--SAGSLHIVLEVFKELHGKGVVFDSEVYSVALKTCTRVMDI 149

Query: 69  KLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSG 128
            LG  +H  L                     K G D+D   V+ +  + N          
Sbjct: 150 WLGMEIHGCL--------------------IKRGFDLD---VYLRCALMNF--------- 177

Query: 129 YANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSF 188
           Y     ++ A  +F  M   + + WN  II   +S  +++G++ ++ ++   +     + 
Sbjct: 178 YGRCWGLEKANQVFHEMPNPEALLWNEAIILNLQSEKLQKGVELFRKMQFSFLKAETATI 237

Query: 189 AGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDA 248
             +L  C K+  L   +Q+HG V   G  S+V + + ++  Y+K G+L  ARR+FD  + 
Sbjct: 238 VRVLQACGKMGALNAAKQIHGYVFRFGLDSDVSLCNPLISMYSKNGKLELARRVFDSMEN 297

Query: 249 RDVLTWTTMVSGYAKLGDMESASKLFNEMP----EKNPVSWTTLIAGYTRNGLGQKALEL 304
           R+  +W +M+S YA LG +  A  LF E+     + + V+W  L++G+  +G  ++ L +
Sbjct: 298 RNTSSWNSMISSYAALGFLNDAWSLFYELESSDMKPDIVTWNCLLSGHFLHGYKEEVLNI 357

Query: 305 FTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSK 364
             RM     +PN  + +S L A + +  L  GK+ HG+++R  F  +  V +SLIDMY K
Sbjct: 358 LQRMQGEGFKPNSSSMTSVLQAISELGFLNMGKETHGYVLRNGFDCDVYVGTSLIDMYVK 417

Query: 365 CGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAV 424
              L   + VFD   N+ N   WN+++S  +  G  E A+RL + M +  +KPD +T   
Sbjct: 418 NHSLTSAQAVFDNMKNR-NIFAWNSLVSGYSFKGMFEDALRLLNQMEKEGIKPDLVTWNG 476

Query: 425 ILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAG 469
           +++     G  +E L      T  LG+ PN      LI   +QAG
Sbjct: 477 MISGYAMWGCGKEALAVLHQ-TKSLGLTPNVVSWTALISGSSQAG 520



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 87/347 (25%), Positives = 158/347 (45%), Gaps = 34/347 (9%)

Query: 124 NMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKS-GAVEEGLKFYKVLRRFSIS 182
           N++S Y   G    A  +F     R+ + WN+ +  +  S G++   L+ +K L    + 
Sbjct: 71  NLISSYLGFGDFWSAAMVFYVGLPRNYLKWNSFVEEFKSSAGSLHIVLEVFKELHGKGVV 130

Query: 183 CNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRL 242
            +   ++  L  C ++ ++ L  ++HG ++  GF  +V +  ++++ Y +C  L  A ++
Sbjct: 131 FDSEVYSVALKTCTRVMDIWLGMEIHGCLIKRGFDLDVYLRCALMNFYGRCWGLEKANQV 190

Query: 243 FDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKAL 302
           F E    + L W   +              + N   EK                  QK +
Sbjct: 191 FHEMPNPEALLWNEAI--------------ILNLQSEKL-----------------QKGV 219

Query: 303 ELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMY 362
           ELF +M    ++    T    L AC  + +L   KQ+HG++ R    S+  + + LI MY
Sbjct: 220 ELFRKMQFSFLKAETATIVRVLQACGKMGALNAAKQIHGYVFRFGLDSDVSLCNPLISMY 279

Query: 363 SKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITL 422
           SK G L   R+VFD  +N+ N+  WN+MIS+    G+   A  LF+++  S +KPD +T 
Sbjct: 280 SKNGKLELARRVFDSMENR-NTSSWNSMISSYAALGFLNDAWSLFYELESSDMKPDIVTW 338

Query: 423 AVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAG 469
             +L+     G  +E L   + M  + G  PN      +++ +++ G
Sbjct: 339 NCLLSGHFLHGYKEEVLNILQRMQGE-GFKPNSSSMTSVLQAISELG 384



 Score = 65.5 bits (158), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 50/183 (27%), Positives = 88/183 (48%), Gaps = 19/183 (10%)

Query: 16  PNNCLIQSFLSLIS----KGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLG 71
           PN   + S+ +LIS     G   +++     + Q G+   + ++  +L+ CA    L+ G
Sbjct: 504 PN---VVSWTALISGSSQAGNNRDSLKFFAQMQQEGVMPNSASITCLLRACASLSLLQKG 560

Query: 72  KRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYAN 131
           K +H  L +        F++  LI MY K  S  +A KVF +I  K L S+N M+ G+A 
Sbjct: 561 KEIHC-LSIRNGFIEDVFVATALIDMYSKSSSLKNAHKVFRRIQNKTLASWNCMIMGFAI 619

Query: 132 LGMMKHARNLFDNMAE----RDVVSWNTMIIGYAKSGAVEEGLKF-------YKVLRRFS 180
            G+ K A ++F+ M +     D +++  ++     SG + EG K+       Y+++ R  
Sbjct: 620 FGLGKEAISVFNEMQKVGVGPDAITFTALLSACKNSGLIGEGWKYFDSMITDYRIVPRLE 679

Query: 181 ISC 183
             C
Sbjct: 680 HYC 682


>gi|255543164|ref|XP_002512645.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223548606|gb|EEF50097.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 716

 Score =  325 bits (832), Expect = 6e-86,   Method: Compositional matrix adjust.
 Identities = 165/473 (34%), Positives = 269/473 (56%), Gaps = 32/473 (6%)

Query: 118 NLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLR 177
           +L+    +L  Y   G       +F+ M + DV+ W+ MI  YA+S    E ++ +  +R
Sbjct: 176 DLYVGVGLLDLYTKFGDANDVLRVFEEMPKHDVIPWSFMISRYAQSNQSREAVELFGQMR 235

Query: 178 RFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELS 237
           R  +  N+F+FA +L  C  +E L+L +QVH  VL  G   NV +S++++D YAKCG L 
Sbjct: 236 RAFVLPNQFTFASVLQSCASIENLQLGKQVHCHVLKVGLDGNVFVSNALMDVYAKCGRL- 294

Query: 238 DARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGL 297
                                         +++ KLF E+P +N V+W T+I GY ++G 
Sbjct: 295 ------------------------------DNSMKLFMELPNRNEVTWNTMIVGYVQSGD 324

Query: 298 GQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSS 357
           G KAL L+  M+  +++ ++ T+SS L ACAS+ +++ G Q+H   ++T +  + +V ++
Sbjct: 325 GDKALSLYKNMLECQVQASEVTYSSVLRACASLAAMELGTQIHSLSLKTIYDKDVVVGNA 384

Query: 358 LIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKP 417
           LIDMY+KCG + + R VFD+   ++  + WN MIS  + HG   +A++ F  M  +   P
Sbjct: 385 LIDMYAKCGSIKNARLVFDMLSERD-EISWNAMISGYSMHGLVGEALKAFQMMQETECVP 443

Query: 418 DKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQ 477
           +K+T   IL+AC+++GL+  G  YF+SM  D GI P  EH+ C++ LL ++G  D+ +  
Sbjct: 444 NKLTFVSILSACSNAGLLDIGQNYFKSMVQDYGIEPCMEHYTCMVWLLGRSGHLDKAVKL 503

Query: 478 LEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKG 537
           +E++P E +  +W AL G C IH ++D+G     Q++  +PQ  ATH LLS+IY+   + 
Sbjct: 504 IEEIPLEPNVKVWRALLGACVIHNDVDLGIMSAQQILQIDPQDEATHVLLSNIYARTRRW 563

Query: 538 RLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQL 590
             V  VR+ +  +  KKE  +SWIE +  VH FSV D+ HP   ++  +LE L
Sbjct: 564 NSVASVRKFMKNKGVKKEPGLSWIENQGIVHYFSVGDTSHPDMKMISGMLEWL 616



 Score =  187 bits (474), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 116/388 (29%), Positives = 200/388 (51%), Gaps = 42/388 (10%)

Query: 118 NLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLR 177
           N F    ++  YA  G +  AR  FD +A +D+VSW  M+  YA++   ++ L+ +  +R
Sbjct: 75  NAFVGTALIDAYAVCGSVNSARQAFDAIACKDMVSWTGMVACYAENDRFQDSLQLFAEMR 134

Query: 178 RFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELS 237
               + N F+FAG+L  C+ LE   + + VHG VL T +  ++ +   ++D Y K G   
Sbjct: 135 MVGFNPNHFTFAGVLKACIGLEAFSVGKSVHGCVLKTCYEMDLYVGVGLLDLYTKFG--- 191

Query: 238 DARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGL 297
                    DA DVL                   ++F EMP+ + + W+ +I+ Y ++  
Sbjct: 192 ---------DANDVL-------------------RVFEEMPKHDVIPWSFMISRYAQSNQ 223

Query: 298 GQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSS 357
            ++A+ELF +M    + PNQ TF+S L +CASI +L+ GKQVH  +++     N  V ++
Sbjct: 224 SREAVELFGQMRRAFVLPNQFTFASVLQSCASIENLQLGKQVHCHVLKVGLDGNVFVSNA 283

Query: 358 LIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKP 417
           L+D+Y+KCG L++  ++F    N+ N + WNTMI    Q G  ++A+ L+ +M+   V+ 
Sbjct: 284 LMDVYAKCGRLDNSMKLFMELPNR-NEVTWNTMIVGYVQSGDGDKALSLYKNMLECQVQA 342

Query: 418 DKITLAVILNACTHSGLVQEGLTYFESMT----HDLGIIPNQEHHACLIELLAQAGCSDQ 473
            ++T + +L AC     ++ G T   S++    +D  ++        LI++ A+ G S +
Sbjct: 343 SEVTYSSVLRACASLAAMELG-TQIHSLSLKTIYDKDVVVGNA----LIDMYAKCG-SIK 396

Query: 474 LMNQLEKMPYEHDSYLWNALHGVCRIHG 501
               +  M  E D   WNA+     +HG
Sbjct: 397 NARLVFDMLSERDEISWNAMISGYSMHG 424



 Score =  148 bits (373), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 98/349 (28%), Positives = 165/349 (47%), Gaps = 34/349 (9%)

Query: 145 MAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLT 204
           M +R+ VS+ T+I GY +S  ++E +  +  + R     N F F  IL + V +E  +L 
Sbjct: 1   MPDRNTVSFVTLIQGYVQSFQLDEVVDLFSRVHREGHELNPFVFTTILKLLVSVECAELA 60

Query: 205 RQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKL 264
             +H  +   G  SN  + ++++DAYA CG ++ AR+ FD    +D+++WT MV+ YA+ 
Sbjct: 61  YSLHACIYKLGHESNAFVGTALIDAYAVCGSVNSARQAFDAIACKDMVSWTGMVACYAE- 119

Query: 265 GDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCL 324
                                         N   Q +L+LF  M ++   PN  TF+  L
Sbjct: 120 ------------------------------NDRFQDSLQLFAEMRMVGFNPNHFTFAGVL 149

Query: 325 CACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENS 384
            AC  + +   GK VHG +++T +  +  V   L+D+Y+K G  ND  +VF+    K + 
Sbjct: 150 KACIGLEAFSVGKSVHGCVLKTCYEMDLYVGVGLLDLYTKFGDANDVLRVFEEMP-KHDV 208

Query: 385 MLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFES 444
           + W+ MIS   Q     +A+ LF  M R+ V P++ T A +L +C     +Q G      
Sbjct: 209 IPWSFMISRYAQSNQSREAVELFGQMRRAFVLPNQFTFASVLQSCASIENLQLG-KQVHC 267

Query: 445 MTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNAL 493
               +G+  N      L+++ A+ G  D  M    ++P   +   WN +
Sbjct: 268 HVLKVGLDGNVFVSNALMDVYAKCGRLDNSMKLFMELP-NRNEVTWNTM 315



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 82/304 (26%), Positives = 149/304 (49%), Gaps = 39/304 (12%)

Query: 13  KNLPNNCLIQSFLSLISKGQLSEAISSLDLLAQ--RGIRLPAE-TLAFILQQCAESKSLK 69
           + +P + +I     +    Q +++  +++L  Q  R   LP + T A +LQ CA  ++L+
Sbjct: 201 EEMPKHDVIPWSFMISRYAQSNQSREAVELFGQMRRAFVLPNQFTFASVLQSCASIENLQ 260

Query: 70  LGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGY 129
           LGK+VH H+ L        F+SN L+ +Y KCG   ++ K+F ++P +N  ++N M+ GY
Sbjct: 261 LGKQVHCHV-LKVGLDGNVFVSNALMDVYAKCGRLDNSMKLFMELPNRNEVTWNTMIVGY 319

Query: 130 ANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFA 189
                                           +SG  ++ L  YK +    +  +E +++
Sbjct: 320 -------------------------------VQSGDGDKALSLYKNMLECQVQASEVTYS 348

Query: 190 GILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDAR 249
            +L  C  L  ++L  Q+H   L T +  +VV+ ++++D YAKCG + +AR +FD    R
Sbjct: 349 SVLRACASLAAMELGTQIHSLSLKTIYDKDVVVGNALIDMYAKCGSIKNARLVFDMLSER 408

Query: 250 DVLTWTTMVSGYAKLGDMESASKLFNEMPE----KNPVSWTTLIAGYTRNGLGQKALELF 305
           D ++W  M+SGY+  G +  A K F  M E     N +++ ++++  +  GL       F
Sbjct: 409 DEISWNAMISGYSMHGLVGEALKAFQMMQETECVPNKLTFVSILSACSNAGLLDIGQNYF 468

Query: 306 TRMM 309
             M+
Sbjct: 469 KSMV 472



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 74/306 (24%), Positives = 121/306 (39%), Gaps = 68/306 (22%)

Query: 11  NRKNLPNNCLIQSFLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKL 70
           NR  +  N +I  +   +  G   +A+S    + +  ++    T + +L+ CA   +++L
Sbjct: 306 NRNEVTWNTMIVGY---VQSGDGDKALSLYKNMLECQVQASEVTYSSVLRACASLAAMEL 362

Query: 71  GKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYA 130
           G ++H  L L         + N LI MY KCGS                           
Sbjct: 363 GTQIH-SLSLKTIYDKDVVVGNALIDMYAKCGS--------------------------- 394

Query: 131 NLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAG 190
               +K+AR +FD ++ERD +SWN MI GY+  G V E LK +++++      N+ +F  
Sbjct: 395 ----IKNARLVFDMLSERDEISWNAMISGYSMHGLVGEALKAFQMMQETECVPNKLTFVS 450

Query: 191 ILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARD 250
           IL+ C     L +     GQ      + +  I          C E               
Sbjct: 451 ILSACSNAGLLDI-----GQNYFKSMVQDYGIEP--------CME--------------- 482

Query: 251 VLTWTTMVSGYAKLGDMESASKLFNEMP-EKNPVSWTTLIAGYTRNGLGQKALELFTRMM 309
              +T MV    + G ++ A KL  E+P E N   W  L+     +      L + +   
Sbjct: 483 --HYTCMVWLLGRSGHLDKAVKLIEEIPLEPNVKVWRALLGACVIH--NDVDLGIMSAQQ 538

Query: 310 ILRIRP 315
           IL+I P
Sbjct: 539 ILQIDP 544


>gi|52076596|dbj|BAD45498.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|218187337|gb|EEC69764.1| hypothetical protein OsI_00012 [Oryza sativa Indica Group]
          Length = 810

 Score =  325 bits (832), Expect = 6e-86,   Method: Compositional matrix adjust.
 Identities = 174/547 (31%), Positives = 287/547 (52%), Gaps = 71/547 (12%)

Query: 118 NLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLR 177
           ++F  N +L  Y   G++  AR +F  M ++D V++N M++G +K G   + L+ +  +R
Sbjct: 169 HVFVCNTLLDAYCKHGLLAAARRVFLEMHDKDAVTYNAMMMGCSKEGLHTQALQLFAAMR 228

Query: 178 RFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELS 237
           R  I    F+F+ ILT+   +  L L  QVH  VL +  + NV +++S++D Y+KC  L 
Sbjct: 229 RAGIPATHFTFSSILTVAAGMAHLLLGHQVHALVLRSTSVLNVFVNNSLLDFYSKCDCLD 288

Query: 238 DAR-------------------------------RLFDETDA----RDVLTWTTMVS--- 259
           D R                               RLF E       R VL + TM+S   
Sbjct: 289 DMRRLFDEMPERDNVSYNVIIAAYAWNQCAATVLRLFREMQKLGFDRQVLPYATMLSVAG 348

Query: 260 --------------------------------GYAKLGDMESASKLFNEMPEKNPVSWTT 287
                                            Y+K G +++A   F+   EK+ +SWT 
Sbjct: 349 SLPDVHIGKQIHAQLVLLGLASEDLLGNALIDMYSKCGMLDAAKSNFSNRSEKSAISWTA 408

Query: 288 LIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTN 347
           LI GY +NG  ++AL+LF+ M    +RP++ TFSS + A +S+  +  G+Q+H +LIR+ 
Sbjct: 409 LITGYVQNGQHEEALQLFSDMRRAGLRPDRATFSSIIKASSSLAMIGLGRQLHSYLIRSG 468

Query: 348 FRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLF 407
           ++S+    S L+DMY+KCGCL++  + FD    + NS+ WN +ISA   +G  + AI++F
Sbjct: 469 YKSSVFSGSVLVDMYAKCGCLDEALRTFDEMPER-NSISWNAVISAYAHYGEAKNAIKMF 527

Query: 408 HDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQ 467
             M+     PD +T   +L AC+H+GL  E + YF  M H   I P +EH+AC+I+ L +
Sbjct: 528 EGMLHCGFNPDSVTFLSVLAACSHNGLADECMKYFHLMKHQYSISPWKEHYACVIDTLGR 587

Query: 468 AGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLL 527
            GC  Q+   L +MP++ D  +W ++   CRIHGN ++ R   D+L    P  +  + +L
Sbjct: 588 VGCFSQVQKMLVEMPFKADPIIWTSILHSCRIHGNQELARVAADKLFGMEPTDATPYVIL 647

Query: 528 SSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVL 587
           S+IY+  G+      V++++ +R  +KE   SW+EI+ K+++F+ +D   PM D +   L
Sbjct: 648 SNIYARAGQWEDAACVKKIMRDRGVRKESGYSWVEIKQKIYSFASNDLTSPMIDEIKDEL 707

Query: 588 EQLAGQM 594
           ++L  +M
Sbjct: 708 DRLYKEM 714



 Score =  161 bits (407), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 108/406 (26%), Positives = 190/406 (46%), Gaps = 65/406 (16%)

Query: 88  TFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAE 147
            F+ N L+  Y K G    AR+VF ++  K+  +YN M+                     
Sbjct: 170 VFVCNTLLDAYCKHGLLAAARRVFLEMHDKDAVTYNAMM--------------------- 208

Query: 148 RDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQV 207
                     +G +K G   + L+ +  +RR  I    F+F+ ILT+   +  L L  QV
Sbjct: 209 ----------MGCSKEGLHTQALQLFAAMRRAGIPATHFTFSSILTVAAGMAHLLLGHQV 258

Query: 208 HGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDM 267
           H  VL +  + NV +++S++D Y+KC  L D RRLFDE   RD +++  +++ YA     
Sbjct: 259 HALVLRSTSVLNVFVNNSLLDFYSKCDCLDDMRRLFDEMPERDNVSYNVIIAAYAWNQCA 318

Query: 268 ESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCAC 327
            +  +LF EM                + G  ++ L   T + +    P+ H         
Sbjct: 319 ATVLRLFREM---------------QKLGFDRQVLPYATMLSVAGSLPDVHI-------- 355

Query: 328 ASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLW 387
                   GKQ+H  L+     S  ++ ++LIDMYSKCG L+  +  F    ++++++ W
Sbjct: 356 --------GKQIHAQLVLLGLASEDLLGNALIDMYSKCGMLDAAKSNFS-NRSEKSAISW 406

Query: 388 NTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTH 447
             +I+   Q+G  E+A++LF DM R+ ++PD+ T + I+ A +   ++  G      +  
Sbjct: 407 TALITGYVQNGQHEEALQLFSDMRRAGLRPDRATFSSIIKASSSLAMIGLGRQLHSYLIR 466

Query: 448 DLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNAL 493
             G   +    + L+++ A+ GC D+ +   ++MP E +S  WNA+
Sbjct: 467 S-GYKSSVFSGSVLVDMYAKCGCLDEALRTFDEMP-ERNSISWNAV 510



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 89/323 (27%), Positives = 154/323 (47%), Gaps = 41/323 (12%)

Query: 107 ARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAV 166
           AR +FD++P KN+FS N +LS Y++ G +  A++LF +   R+  +W  M+  +A +G  
Sbjct: 62  ARAMFDQMPHKNIFSLNLILSAYSSSGDLPAAQHLFLSSPHRNATTWTIMMRAHAAAGRT 121

Query: 167 EEGLKFYKVLRRFSISCNEFSFAGILTI--CVKLEELKLTRQVHGQVLVTGFLSNVVISS 224
            + L  ++ +    +  +  +   +L +  C           +H   +  G  ++V + +
Sbjct: 122 SDALSLFRAMLGEGVIPDRVTVTTVLNLPGCT-------VPSLHPFAIKFGLDTHVFVCN 174

Query: 225 SIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVS 284
           +++DAY K G L+ ARR+F E   +D +T+  M+ G +K                     
Sbjct: 175 TLLDAYCKHGLLAAARRVFLEMHDKDAVTYNAMMMGCSK--------------------- 213

Query: 285 WTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLI 344
                      GL  +AL+LF  M    I     TFSS L   A +  L  G QVH  ++
Sbjct: 214 ----------EGLHTQALQLFAAMRRAGIPATHFTFSSILTVAAGMAHLLLGHQVHALVL 263

Query: 345 RTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAI 404
           R+    N  V +SL+D YSKC CL+D R++FD    ++N + +N +I+A   +      +
Sbjct: 264 RSTSVLNVFVNNSLLDFYSKCDCLDDMRRLFDEMPERDN-VSYNVIIAAYAWNQCAATVL 322

Query: 405 RLFHDMVRSSVKPDKITLAVILN 427
           RLF +M +       +  A +L+
Sbjct: 323 RLFREMQKLGFDRQVLPYATMLS 345



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 98/406 (24%), Positives = 177/406 (43%), Gaps = 81/406 (19%)

Query: 30  KGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTF 89
           +G  ++A+     + + GI     T + IL   A    L LG +VH  L L        F
Sbjct: 214 EGLHTQALQLFAAMRRAGIPATHFTFSSILTVAAGMAHLLLGHQVHA-LVLRSTSVLNVF 272

Query: 90  LSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYA------------------- 130
           ++N L+  Y KC    D R++FD++P ++  SYN +++ YA                   
Sbjct: 273 VNNSLLDFYSKCDCLDDMRRLFDEMPERDNVSYNVIIAAYAWNQCAATVLRLFREMQKLG 332

Query: 131 ---------------------NLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAV--- 166
                                ++G   HA+ +   +A  D++  N +I  Y+K G +   
Sbjct: 333 FDRQVLPYATMLSVAGSLPDVHIGKQIHAQLVLLGLASEDLLG-NALIDMYSKCGMLDAA 391

Query: 167 ----------------------------EEGLKFYKVLRRFSISCNEFSFAGILTICVKL 198
                                       EE L+ +  +RR  +  +  +F+ I+     L
Sbjct: 392 KSNFSNRSEKSAISWTALITGYVQNGQHEEALQLFSDMRRAGLRPDRATFSSIIKASSSL 451

Query: 199 EELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMV 258
             + L RQ+H  ++ +G+ S+V   S +VD YAKCG L +A R FDE   R+ ++W  ++
Sbjct: 452 AMIGLGRQLHSYLIRSGYKSSVFSGSVLVDMYAKCGCLDEALRTFDEMPERNSISWNAVI 511

Query: 259 SGYAKLGDMESASKLFNEMPE--KNP--VSWTTLIAGYTRNGLGQKALELFTRMM-ILRI 313
           S YA  G+ ++A K+F  M     NP  V++ +++A  + NGL  + ++ F  M     I
Sbjct: 512 SAYAHYGEAKNAIKMFEGMLHCGFNPDSVTFLSVLAACSHNGLADECMKYFHLMKHQYSI 571

Query: 314 RPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLI 359
            P +  ++   C   ++  +    QV   L+   F+++ I+ +S++
Sbjct: 572 SPWKEHYA---CVIDTLGRVGCFSQVQKMLVEMPFKADPIIWTSIL 614



 Score = 95.5 bits (236), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 66/263 (25%), Positives = 122/263 (46%), Gaps = 14/263 (5%)

Query: 234 GELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYT 293
           G L  AR +FD+   +++ +   ++S Y+  GD+ +A  LF   P +N  +WT ++  + 
Sbjct: 57  GHLHRARAMFDQMPHKNIFSLNLILSAYSSSGDLPAAQHLFLSSPHRNATTWTIMMRAHA 116

Query: 294 RNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTI 353
             G    AL LF  M+   + P++ T ++ L      V       +H F I+    ++  
Sbjct: 117 AAGRTSDALSLFRAMLGEGVIPDRVTVTTVLNLPGCTV-----PSLHPFAIKFGLDTHVF 171

Query: 354 VMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRS 413
           V ++L+D Y K G L   R+VF L  + ++++ +N M+   ++ G   QA++LF  M R+
Sbjct: 172 VCNTLLDAYCKHGLLAAARRVF-LEMHDKDAVTYNAMMMGCSKEGLHTQALQLFAAMRRA 230

Query: 414 SVKPDKITLAVILNAC---THSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGC 470
            +     T + IL       H  L  +        T  L +  N      L++  ++  C
Sbjct: 231 GIPATHFTFSSILTVAAGMAHLLLGHQVHALVLRSTSVLNVFVNNS----LLDFYSKCDC 286

Query: 471 SDQLMNQLEKMPYEHDSYLWNAL 493
            D +    ++MP E D+  +N +
Sbjct: 287 LDDMRRLFDEMP-ERDNVSYNVI 308



 Score = 82.0 bits (201), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 68/277 (24%), Positives = 138/277 (49%), Gaps = 16/277 (5%)

Query: 3   SNFSPRGINRKNLPNNCLIQSFLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQC 62
           SNFS R   +  +    LI  +   +  GQ  EA+     + + G+R    T + I++  
Sbjct: 393 SNFSNRS-EKSAISWTALITGY---VQNGQHEEALQLFSDMRRAGLRPDRATFSSIIKAS 448

Query: 63  AESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSY 122
           +    + LG+++H +L  +  K+ + F  + L+ MY KCG   +A + FD++P +N  S+
Sbjct: 449 SSLAMIGLGRQLHSYLIRSGYKS-SVFSGSVLVDMYAKCGCLDEALRTFDEMPERNSISW 507

Query: 123 NNMLSGYANLGMMKHARNLFDNMAE----RDVVSWNTMIIGYAKSGAVEEGLKFYKVLR- 177
           N ++S YA+ G  K+A  +F+ M       D V++ +++   + +G  +E +K++ +++ 
Sbjct: 508 NAVISAYAHYGEAKNAIKMFEGMLHCGFNPDSVTFLSVLAACSHNGLADECMKYFHLMKH 567

Query: 178 RFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELS 237
           ++SIS  +  +A ++     L  +    QV   ++   F ++ +I +SI+ +    G   
Sbjct: 568 QYSISPWKEHYACVID---TLGRVGCFSQVQKMLVEMPFKADPIIWTSILHSCRIHGNQE 624

Query: 238 DARRLFDE---TDARDVLTWTTMVSGYAKLGDMESAS 271
            AR   D+    +  D   +  + + YA+ G  E A+
Sbjct: 625 LARVAADKLFGMEPTDATPYVILSNIYARAGQWEDAA 661


>gi|225425100|ref|XP_002272744.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 622

 Score =  325 bits (832), Expect = 6e-86,   Method: Compositional matrix adjust.
 Identities = 165/489 (33%), Positives = 269/489 (55%), Gaps = 5/489 (1%)

Query: 110 VFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEG 169
           + D+IP   L ++        N G + +AR +FD +   +   WNTMI GY+ S   EE 
Sbjct: 47  ILDEIPASKLLAF----CASPNSGSLAYARTVFDRIFRPNTFMWNTMIRGYSNSKEPEEA 102

Query: 170 LKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDA 229
           L  Y  +   S+  N ++F  +L  C  +  L+ T+Q+H  ++  GF S +  ++S+++ 
Sbjct: 103 LLLYHHMLYHSVPHNAYTFPFLLKACSSMSALEETQQIHAHIIKMGFGSEIYTTNSLLNV 162

Query: 230 YAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLI 289
           Y+K G++  AR LFD+ D RD ++W +M+ GY K G++E A ++FN MPE+N +SWT++I
Sbjct: 163 YSKSGDIKSARLLFDQVDQRDTVSWNSMIDGYTKCGEIEMAYEIFNHMPERNIISWTSMI 222

Query: 290 AGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFR 349
           +G    G  ++AL LF RM    I+ +     S L ACA +  L  GK +H ++ +    
Sbjct: 223 SGCVGAGKPKEALNLFHRMQTAGIKLDNVALVSTLQACADLGVLDQGKWIHAYIKKHEIE 282

Query: 350 SNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHD 409
            + I+   LIDMY+KCG L +  +VF   + K  S +W  MIS    HG   +A+  F  
Sbjct: 283 IDPILGCVLIDMYAKCGDLEEAIEVFRKMEEKGVS-VWTAMISGYAIHGRGREALEWFMK 341

Query: 410 MVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAG 469
           M  + V+P+++T   IL AC+H+GLV E    FESM    G  P+ EH+ C+++LL +AG
Sbjct: 342 MQTAGVEPNQMTFTGILTACSHAGLVHEAKLLFESMERIHGFKPSIEHYGCMVDLLGRAG 401

Query: 470 CSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSS 529
              +    +E MP + ++ +W AL   C IHGN+++G+++   LI  +P     +  L+S
Sbjct: 402 LLKEAEELIENMPVKPNAAIWGALLNACHIHGNLELGKQIGKILIQVDPGHGGRYIHLAS 461

Query: 530 IYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQ 589
           I++A G+     +VR+ + E+   K    S I +    H F   D  HP    +  +LEQ
Sbjct: 462 IHAAAGEWNQAARVRRQMKEQGVSKLPGCSVISVNGTAHEFLAGDESHPQIKEIDHMLEQ 521

Query: 590 LAGQMGEDA 598
           +  ++ E+ 
Sbjct: 522 IVERLREEG 530



 Score =  152 bits (385), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 86/348 (24%), Positives = 166/348 (47%), Gaps = 33/348 (9%)

Query: 52  AETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVF 111
           A T  F+L+ C+   +L+  +++H H+ +        + +N L+++Y K G    AR +F
Sbjct: 118 AYTFPFLLKACSSMSALEETQQIHAHI-IKMGFGSEIYTTNSLLNVYSKSGDIKSARLLF 176

Query: 112 DKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLK 171
           D++  ++  S+N+M+ GY   G ++ A  +F++M ER+++SW +MI G   +G  +E L 
Sbjct: 177 DQVDQRDTVSWNSMIDGYTKCGEIEMAYEIFNHMPERNIISWTSMISGCVGAGKPKEALN 236

Query: 172 FYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYA 231
            +  ++   I  +  +    L  C  L  L   + +H  +       + ++   ++D YA
Sbjct: 237 LFHRMQTAGIKLDNVALVSTLQACADLGVLDQGKWIHAYIKKHEIEIDPILGCVLIDMYA 296

Query: 232 KCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAG 291
           KCG+L +A  +F + + + V  WT M+SGYA                             
Sbjct: 297 KCGDLEEAIEVFRKMEEKGVSVWTAMISGYAI---------------------------- 328

Query: 292 YTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTN-FRS 350
              +G G++ALE F +M    + PNQ TF+  L AC+    +   K +   + R + F+ 
Sbjct: 329 ---HGRGREALEWFMKMQTAGVEPNQMTFTGILTACSHAGLVHEAKLLFESMERIHGFKP 385

Query: 351 NTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHG 398
           +      ++D+  + G L +  ++ +    K N+ +W  +++A   HG
Sbjct: 386 SIEHYGCMVDLLGRAGLLKEAEELIENMPVKPNAAIWGALLNACHIHG 433



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 100/391 (25%), Positives = 167/391 (42%), Gaps = 76/391 (19%)

Query: 191 ILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVD--AYAKCGELSDARRLFDETDA 248
           +L  C  +EEL   RQ+HGQ+L TG + + + +S ++   A    G L+ AR +FD    
Sbjct: 24  LLQRCSNMEEL---RQIHGQMLKTGLILDEIPASKLLAFCASPNSGSLAYARTVFDRIFR 80

Query: 249 RDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRM 308
            +   W TM+ GY+                 K P                ++AL L+  M
Sbjct: 81  PNTFMWNTMIRGYSN---------------SKEP----------------EEALLLYHHM 109

Query: 309 MILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCL 368
           +   +  N +TF   L AC+S+ +L+  +Q+H  +I+  F S     +SL+++YSK G +
Sbjct: 110 LYHSVPHNAYTFPFLLKACSSMSALEETQQIHAHIIKMGFGSEIYTTNSLLNVYSKSGDI 169

Query: 369 NDGRQVFDLTDNKE----NSML--------------------------WNTMISALTQHG 398
              R +FD  D ++    NSM+                          W +MIS     G
Sbjct: 170 KSARLLFDQVDQRDTVSWNSMIDGYTKCGEIEMAYEIFNHMPERNIISWTSMISGCVGAG 229

Query: 399 YDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEG-LTYFESMTHDLGIIPNQEH 457
             ++A+ LFH M  + +K D + L   L AC   G++ +G   +     H++ I P    
Sbjct: 230 KPKEALNLFHRMQTAGIKLDNVALVSTLQACADLGVLDQGKWIHAYIKKHEIEIDPIL-- 287

Query: 458 HAC-LIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLID- 515
             C LI++ A+ G  ++ +    KM  E    +W A+     IHG    GR+ ++  +  
Sbjct: 288 -GCVLIDMYAKCGDLEEAIEVFRKME-EKGVSVWTAMISGYAIHGR---GREALEWFMKM 342

Query: 516 QNPQSSATHGLLSSIYSALGKGRLVEKVRQL 546
           Q           + I +A     LV + + L
Sbjct: 343 QTAGVEPNQMTFTGILTACSHAGLVHEAKLL 373



 Score = 66.2 bits (160), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 66/277 (23%), Positives = 118/277 (42%), Gaps = 43/277 (15%)

Query: 14  NLPNNCLIQSFLSLIS----KGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLK 69
           ++P   +I S+ S+IS     G+  EA++    +   GI+L    L   LQ CA+   L 
Sbjct: 209 HMPERNII-SWTSMISGCVGAGKPKEALNLFHRMQTAGIKLDNVALVSTLQACADLGVLD 267

Query: 70  LGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGY 129
            GK +H ++K  + +     L   LI MY KCG   +A +VF K+  K +  +  M+SGY
Sbjct: 268 QGKWIHAYIKKHEIEI-DPILGCVLIDMYAKCGDLEEAIEVFRKMEEKGVSVWTAMISGY 326

Query: 130 ANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFA 189
           A      H R                            E L+++  ++   +  N+ +F 
Sbjct: 327 A-----IHGRG--------------------------REALEWFMKMQTAGVEPNQMTFT 355

Query: 190 GILTICVK---LEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDET 246
           GILT C     + E KL  +   +  + GF  ++     +VD   + G L +A  L +  
Sbjct: 356 GILTACSHAGLVHEAKLLFESMER--IHGFKPSIEHYGCMVDLLGRAGLLKEAEELIENM 413

Query: 247 DAR-DVLTWTTMVSGYAKLGDMESASKLFNEMPEKNP 282
             + +   W  +++     G++E   ++   + + +P
Sbjct: 414 PVKPNAAIWGALLNACHIHGNLELGKQIGKILIQVDP 450


>gi|296083884|emb|CBI24272.3| unnamed protein product [Vitis vinifera]
          Length = 729

 Score =  324 bits (831), Expect = 6e-86,   Method: Compositional matrix adjust.
 Identities = 175/579 (30%), Positives = 301/579 (51%), Gaps = 46/579 (7%)

Query: 31  GQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFL 90
           G   E I    L+   G+R        + + C+E K+ ++GK V+               
Sbjct: 90  GDYEETIKLFYLMVNEGVRPDHFVFPKVFKACSELKNYRVGKDVY--------------- 134

Query: 91  SNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDV 150
            ++++S+ F+  S V                  ++L  +   G M  AR  F+ +  +DV
Sbjct: 135 -DYMLSIGFEGNSCVKG----------------SILDMFIKCGRMDIARRFFEEIEFKDV 177

Query: 151 VSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQ 210
             WN M+ GY   G  ++ L  ++ +    +  N  + A  ++ C  L  L+  R++HG 
Sbjct: 178 FMWNIMVSGYTSKGEFKKALNVFRKMVLEGVKPNSITIASAVSACTNLSLLRHGREIHGY 237

Query: 211 VL-VTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTM--VSGYAKLGD- 266
            + V    S++++ +S+VD YAKC  +  ARR F      D+++W  M  V+G+ + GD 
Sbjct: 238 CIKVEELDSDLLVGNSLVDYYAKCRSVEVARRKFGMIKQTDLVSWNAMLAVTGFTQYGDG 297

Query: 267 ---------MESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQ 317
                    M  A  +F+E+  ++ V W ++I+   ++G    AL+L   M +  +  N 
Sbjct: 298 KAALEFFQRMHIACSVFSELSTRDVVVWNSIISACAQSGRSVNALDLLREMNLSNVEVNT 357

Query: 318 HTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDL 377
            T  S L AC+ + +L+ GK++H F+IR    +   +++SLIDMY +CG +   R++FDL
Sbjct: 358 VTMVSALPACSKLAALRQGKEIHQFIIRCGLDTCNFILNSLIDMYGRCGSIQKSRRIFDL 417

Query: 378 TDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQE 437
              ++  + WN MIS    HG+   A+ LF       +KP+ IT   +L+AC+HSGL++E
Sbjct: 418 MPQRD-LVSWNVMISVYGMHGFGMDAVNLFQQFRTMGLKPNHITFTNLLSACSHSGLIEE 476

Query: 438 GLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVC 497
           G  YF+ M  +  + P  E +AC+++LL++AG  ++ +  +EKMP+E ++ +W +L G C
Sbjct: 477 GWKYFKMMKTEYAMDPAVEQYACMVDLLSRAGQFNETLEFIEKMPFEPNAAVWGSLLGAC 536

Query: 498 RIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQA 557
           RIH N D+       L +  PQSS  + L+++IYSA G+     K+R L+ ER   K   
Sbjct: 537 RIHCNPDLAEYAARYLFELEPQSSGNYVLMANIYSAAGRWEDAAKIRCLMKERGVTKPPG 596

Query: 558 ISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQMGE 596
            SWIE++ K+H+F V D+ HP+ + + + +E L   + E
Sbjct: 597 CSWIEVKRKLHSFVVGDTSHPLMEQISAKMESLYFDIKE 635



 Score =  164 bits (414), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 122/492 (24%), Positives = 210/492 (42%), Gaps = 108/492 (21%)

Query: 53  ETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFD 112
           E  A ILQ+C +  +L+LG +VH  L +                     G DV       
Sbjct: 11  EIYASILQKCRKLYNLRLGFQVHAQLVVN--------------------GVDVCE----- 45

Query: 113 KIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKF 172
                  F  + +L  Y   G ++ AR +FD M+ER+V SW  ++  Y   G  EE +K 
Sbjct: 46  -------FLGSRLLEVYCQTGCVEDARRMFDKMSERNVFSWTAIMEMYCGLGDYEETIKL 98

Query: 173 YKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAK 232
           + ++    +  + F F  +   C +L+  ++ + V+  +L  GF  N  +  SI+D + K
Sbjct: 99  FYLMVNEGVRPDHFVFPKVFKACSELKNYRVGKDVYDYMLSIGFEGNSCVKGSILDMFIK 158

Query: 233 CGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGY 292
           CG +  ARR F+E + +DV  W  MVSGY   G+                          
Sbjct: 159 CGRMDIARRFFEEIEFKDVFMWNIMVSGYTSKGEF------------------------- 193

Query: 293 TRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRT-NFRSN 351
                 +KAL +F +M++  ++PN  T +S + AC ++  L+HG+++HG+ I+     S+
Sbjct: 194 ------KKALNVFRKMVLEGVKPNSITIASAVSACTNLSLLRHGREIHGYCIKVEELDSD 247

Query: 352 TIVMSSLIDMYSKCGCLNDGRQVFDLTDNKE----NSML--------------------- 386
            +V +SL+D Y+KC  +   R+ F +    +    N+ML                     
Sbjct: 248 LLVGNSLVDYYAKCRSVEVARRKFGMIKQTDLVSWNAMLAVTGFTQYGDGKAALEFFQRM 307

Query: 387 -----------------WNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNAC 429
                            WN++ISA  Q G    A+ L  +M  S+V+ + +T+   L AC
Sbjct: 308 HIACSVFSELSTRDVVVWNSIISACAQSGRSVNALDLLREMNLSNVEVNTVTMVSALPAC 367

Query: 430 THSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYL 489
           +    +++G    + +    G+         LI++  + G   +     + MP + D   
Sbjct: 368 SKLAALRQGKEIHQFIIR-CGLDTCNFILNSLIDMYGRCGSIQKSRRIFDLMP-QRDLVS 425

Query: 490 WNALHGVCRIHG 501
           WN +  V  +HG
Sbjct: 426 WNVMISVYGMHG 437



 Score =  132 bits (332), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 90/383 (23%), Positives = 170/383 (44%), Gaps = 46/383 (12%)

Query: 29  SKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTT 88
           SKG+  +A++    +   G++  + T+A  +  C     L+ G+ +H +    +      
Sbjct: 189 SKGEFKKALNVFRKMVLEGVKPNSITIASAVSACTNLSLLRHGREIHGYCIKVEELDSDL 248

Query: 89  FLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNML--SGYANLGMMKHARNLFDNM- 145
            + N L+  Y KC S   AR+ F  I   +L S+N ML  +G+   G  K A   F  M 
Sbjct: 249 LVGNSLVDYYAKCRSVEVARRKFGMIKQTDLVSWNAMLAVTGFTQYGDGKAALEFFQRMH 308

Query: 146 ---------AERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICV 196
                    + RDVV WN++I   A+SG     L   + +   ++  N  +    L  C 
Sbjct: 309 IACSVFSELSTRDVVVWNSIISACAQSGRSVNALDLLREMNLSNVEVNTVTMVSALPACS 368

Query: 197 KLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTT 256
           KL  L+  +++H  ++  G  +   I +S++D Y +CG +  +RR+FD    RD+++W  
Sbjct: 369 KLAALRQGKEIHQFIIRCGLDTCNFILNSLIDMYGRCGSIQKSRRIFDLMPQRDLVSWNV 428

Query: 257 MVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPN 316
           M+S Y                                 +G G  A+ LF +   + ++PN
Sbjct: 429 MISVYGM-------------------------------HGFGMDAVNLFQQFRTMGLKPN 457

Query: 317 QHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIV--MSSLIDMYSKCGCLNDGRQV 374
             TF++ L AC+    ++ G +    +++T +  +  V   + ++D+ S+ G  N+  + 
Sbjct: 458 HITFTNLLSACSHSGLIEEGWKYFK-MMKTEYAMDPAVEQYACMVDLLSRAGQFNETLEF 516

Query: 375 FDLTDNKENSMLWNTMISALTQH 397
            +    + N+ +W +++ A   H
Sbjct: 517 IEKMPFEPNAAVWGSLLGACRIH 539


>gi|356509350|ref|XP_003523413.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g77010, mitochondrial-like [Glycine max]
          Length = 678

 Score =  324 bits (831), Expect = 7e-86,   Method: Compositional matrix adjust.
 Identities = 179/553 (32%), Positives = 306/553 (55%), Gaps = 2/553 (0%)

Query: 11  NRKNLPNNCLIQSFLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKL 70
           ++ +L  N +I S+      G+      S++L   + +   A  LA  L  CA+S +L  
Sbjct: 126 SKNHLVWNSIIHSYSRHGHPGKALFLFKSMNLDPSQIVYRDAFVLATALGACADSLALNC 185

Query: 71  GKRVHLHLKLTQRKTPTT-FLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGY 129
           GK+VH  + +          L + LI++Y KCG    A ++   +   + FS + ++SGY
Sbjct: 186 GKQVHARVFVDGMGLELDRVLCSSLINLYGKCGDLDSAARIVSFVRDVDEFSLSALISGY 245

Query: 130 ANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFA 189
           AN G M+ AR++FD+  +   V WN++I GY  +G   E +  +  + R  +  +  + A
Sbjct: 246 ANAGRMREARSVFDSKVDPCAVLWNSIISGYVSNGEEVEAVNLFSAMLRNGVQGDASAVA 305

Query: 190 GILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDAR 249
            IL+    L  ++L +Q+H      G   ++V++SS++DAY+KC    +A +LF E    
Sbjct: 306 NILSAASGLLVVELVKQMHVYACKAGVTHDIVVASSLLDAYSKCQSPCEACKLFSELKEY 365

Query: 250 DVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMM 309
           D +   TM++ Y+  G +E A  +FN MP K  +SW +++ G T+N    +AL +F++M 
Sbjct: 366 DTILLNTMITVYSNCGRIEDAKLIFNTMPSKTLISWNSILVGLTQNACPSEALNIFSQMN 425

Query: 310 ILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLN 369
            L ++ ++ +F+S + ACA   SL+ G+QV G  I     S+ I+ +SL+D Y KCG + 
Sbjct: 426 KLDLKMDRFSFASVISACACRSSLELGEQVFGKAITIGLESDQIISTSLVDFYCKCGFVE 485

Query: 370 DGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNAC 429
            GR+VFD    K + + WNTM+     +GY  +A+ LF +M    V P  IT   +L+AC
Sbjct: 486 IGRKVFDGM-VKTDEVSWNTMLMGYATNGYGIEALTLFCEMTYGGVWPSAITFTGVLSAC 544

Query: 430 THSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYL 489
            HSGLV+EG   F +M H   I P  EH +C+++L A+AG  ++ M+ +E+MP++ D+ +
Sbjct: 545 DHSGLVEEGRNLFHTMKHSYNINPGIEHFSCMVDLFARAGYFEEAMDLIEEMPFQADANM 604

Query: 490 WNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINE 549
           W ++   C  HGN  +G+   +Q+I   P+++  +  LS+I ++ G       VR+L+ +
Sbjct: 605 WLSVLRGCIAHGNKTIGKMAAEQIIQLEPENTGAYIQLSNILASSGDWEGSALVRELMRD 664

Query: 550 RQFKKEQAISWIE 562
           + F+K    SW +
Sbjct: 665 KHFQKIPGCSWAD 677



 Score =  152 bits (383), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 123/498 (24%), Positives = 233/498 (46%), Gaps = 49/498 (9%)

Query: 67  SLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNM- 125
           +L+ G+++H+    T     +  ++N L+ +Y +C +  DA  +FD++P  N FS+N + 
Sbjct: 15  TLREGRQLHVAFLKTGILNSSVAVANRLLQLYSRCRNLQDASHLFDEMPQTNSFSWNTLV 74

Query: 126 ------------------------------LSGYANLGMMKHARNLFDNMAERDVVSWNT 155
                                         +S +A  G ++ A +LF+ M  ++ + WN+
Sbjct: 75  QAHLNSGHTHSALHLFNAMPHKTHFSWNMVVSAFAKSGHLQLAHSLFNAMPSKNHLVWNS 134

Query: 156 MIIGYAKSGAVEEGLKFYKVLRRFS---ISCNEFSFAGILTICVKLEELKLTRQVHGQVL 212
           +I  Y++ G   + L  +K +       +  + F  A  L  C     L   +QVH +V 
Sbjct: 135 IIHSYSRHGHPGKALFLFKSMNLDPSQIVYRDAFVLATALGACADSLALNCGKQVHARVF 194

Query: 213 VTGFLSNV--VISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESA 270
           V G    +  V+ SS+++ Y KCG+L  A R+       D  + + ++SGYA  G M  A
Sbjct: 195 VDGMGLELDRVLCSSLINLYGKCGDLDSAARIVSFVRDVDEFSLSALISGYANAGRMREA 254

Query: 271 SKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASI 330
             +F+   +   V W ++I+GY  NG   +A+ LF+ M+   ++ +    ++ L A + +
Sbjct: 255 RSVFDSKVDPCAVLWNSIISGYVSNGEEVEAVNLFSAMLRNGVQGDASAVANILSAASGL 314

Query: 331 VSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKE-NSMLWNT 389
           + ++  KQ+H +  +     + +V SSL+D YSKC    +  ++F  ++ KE +++L NT
Sbjct: 315 LVVELVKQMHVYACKAGVTHDIVVASSLLDAYSKCQSPCEACKLF--SELKEYDTILLNT 372

Query: 390 MISALTQHGYDEQAIRLFHDM-VRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHD 448
           MI+  +  G  E A  +F+ M  ++ +  + I + +  NAC       E L  F  M + 
Sbjct: 373 MITVYSNCGRIEDAKLIFNTMPSKTLISWNSILVGLTQNACP-----SEALNIFSQM-NK 426

Query: 449 LGIIPNQEHHACLIELLA---QAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDM 505
           L +  ++   A +I   A        +Q+  +   +  E D  +  +L       G +++
Sbjct: 427 LDLKMDRFSFASVISACACRSSLELGEQVFGKAITIGLESDQIISTSLVDFYCKCGFVEI 486

Query: 506 GRKVVDQLIDQNPQSSAT 523
           GRKV D ++  +  S  T
Sbjct: 487 GRKVFDGMVKTDEVSWNT 504


>gi|449432255|ref|XP_004133915.1| PREDICTED: pentatricopeptide repeat-containing protein At2g45350,
           chloroplastic-like [Cucumis sativus]
 gi|449480068|ref|XP_004155790.1| PREDICTED: pentatricopeptide repeat-containing protein At2g45350,
           chloroplastic-like [Cucumis sativus]
          Length = 638

 Score =  324 bits (831), Expect = 7e-86,   Method: Compositional matrix adjust.
 Identities = 181/550 (32%), Positives = 300/550 (54%), Gaps = 43/550 (7%)

Query: 42  LLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKC 101
           ++ + G  +   + + IL+ CA    ++ GK++H  L +        FL N LI+MY +C
Sbjct: 115 MMLENGFCVDKFSFSLILKACARVCLVEEGKQIH-GLLMKLEIGSNLFLLNCLIAMYLRC 173

Query: 102 GSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMA--ERDVVSWNTMIIG 159
           G    AR+VFD++P+++  SYN+M+ GY   G +  AR LFD+M   +++++SWN+M+ G
Sbjct: 174 GDIEFARQVFDRMPIQDSVSYNSMIDGYVKSGTIDLARELFDSMPLEDKNLISWNSMLGG 233

Query: 160 YAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSN 219
           +A++   ++G+                              L+L  ++  + LV+     
Sbjct: 234 FAQT---KDGIGL---------------------------ALELFEKMPERDLVSW---- 259

Query: 220 VVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPE 279
               ++I+  +AKCG +  A  LF+    RDV++W+ M+ GYAKLGD++ A  LF+EMP+
Sbjct: 260 ----NTIIGGFAKCGRIEFAHSLFNRMPKRDVISWSNMIDGYAKLGDIKVARTLFDEMPD 315

Query: 280 KNPVSWTTLIAGYTRNGLGQKALELFTRMMIL-RIRPNQHTFSSCLCACASIVSLKHGKQ 338
           K+ V++ T++AGY +NG   +ALE+F  M     + P++ T    L A + +  ++    
Sbjct: 316 KDVVAFNTIMAGYAQNGYYTEALEIFHEMQRQSNLSPDETTLVVALSAISQLGHVEKAAS 375

Query: 339 VHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHG 398
           +H + +         V  +LIDMYSKCG + +   +FD  D K     WN MIS + ++G
Sbjct: 376 MHNYFLENGISVTGKVAVALIDMYSKCGSIENAILIFDGVDQKGIDH-WNAMISGMARNG 434

Query: 399 YDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHH 458
             + A  +  +M R SVKPD IT   +LNAC H+GLV+EGL  FE M     + P  +H+
Sbjct: 435 LGKLAFGMLLEMHRLSVKPDGITFIGVLNACAHAGLVKEGLICFELMRKVHKLEPKLQHY 494

Query: 459 ACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNP 518
            C++++L +AG  +  +  +E+MP E +  +W  L   C+ H N  +G  +   L+  + 
Sbjct: 495 GCMVDILGKAGLVEGALKFIEEMPIEPNDIIWRTLLSACQNHENFTIGELIAKHLMTMDS 554

Query: 519 QSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHP 578
            +S+++ LLS+IY+ LG      KVR ++ ++   K    SWIE+E  VH F V D  HP
Sbjct: 555 CNSSSYVLLSNIYARLGLWSAASKVRMMMKKQNLTKVPGCSWIELEGVVHEFLVRDKSHP 614

Query: 579 MRDVLYSVLE 588
               +YSVL+
Sbjct: 615 YVSEIYSVLD 624



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 97/358 (27%), Positives = 187/358 (52%), Gaps = 23/358 (6%)

Query: 144 NMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKL 203
           N  + D   WN +I  Y+        L  + ++       ++FSF+ IL  C ++  ++ 
Sbjct: 84  NHLDDDPFLWNAVIKSYSHGNEPVRALVLFCMMLENGFCVDKFSFSLILKACARVCLVEE 143

Query: 204 TRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAK 263
            +Q+HG ++     SN+ + + ++  Y +CG++  AR++FD    +D +++ +M+ GY K
Sbjct: 144 GKQIHGLLMKLEIGSNLFLLNCLIAMYLRCGDIEFARQVFDRMPIQDSVSYNSMIDGYVK 203

Query: 264 LGDMESASKLFNEMP--EKNPVSWTTLIAGY--TRNGLGQKALELFTRMMILRIRPNQHT 319
            G ++ A +LF+ MP  +KN +SW +++ G+  T++G+G  ALELF +M   R   + +T
Sbjct: 204 SGTIDLARELFDSMPLEDKNLISWNSMLGGFAQTKDGIGL-ALELFEKMP-ERDLVSWNT 261

Query: 320 FSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTD 379
                  C  I      +  H    R   R + I  S++ID Y+K G +   R +FD   
Sbjct: 262 IIGGFAKCGRI------EFAHSLFNRMPKR-DVISWSNMIDGYAKLGDIKVARTLFDEMP 314

Query: 380 NKENSMLWNTMISALTQHGYDEQAIRLFHDMVR-SSVKPDKITLAVILNACTHSGLVQEG 438
           +K+  + +NT+++   Q+GY  +A+ +FH+M R S++ PD+ TL V L+A +  G V++ 
Sbjct: 315 DKD-VVAFNTIMAGYAQNGYYTEALEIFHEMQRQSNLSPDETTLVVALSAISQLGHVEKA 373

Query: 439 LTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQ---LMNQLEKMPYEHDSYLWNAL 493
            +       + GI    +    LI++ ++ G  +    + + +++   +H    WNA+
Sbjct: 374 ASMHNYFLEN-GISVTGKVAVALIDMYSKCGSIENAILIFDGVDQKGIDH----WNAM 426


>gi|225430696|ref|XP_002266026.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g47840 [Vitis vinifera]
          Length = 713

 Score =  324 bits (831), Expect = 7e-86,   Method: Compositional matrix adjust.
 Identities = 162/567 (28%), Positives = 298/567 (52%), Gaps = 64/567 (11%)

Query: 27  LISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTP 86
           L+  G   EA+     + +  +   + T A  L+ CA+S +L  G+ +H    + +    
Sbjct: 192 LVRAGYNKEALVYFSEMWRSRVEYDSYTFAIALKACADSGALNYGREIHAQ-AMKKGFDV 250

Query: 87  TTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMA 146
           ++F++N L +MY KCG                                +++   LF+ M+
Sbjct: 251 SSFVANTLATMYNKCGK-------------------------------LEYGLTLFEKMS 279

Query: 147 ERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQ 206
            RDVVSW T+I    + G  E  ++ +  +R   +S NE++FA +++ C  L  ++   Q
Sbjct: 280 MRDVVSWTTIITTLVQMGQEECAVQAFIRMRESDVSPNEYTFAAVISGCANLARIEWGEQ 339

Query: 207 VHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGD 266
           +H  +L  G  +++ + +SI+  YAKCG+L+ +  +F E   RD+++W+T+++GY++ G 
Sbjct: 340 LHALILHLGLAASLSVENSIMTMYAKCGQLTSSSVIFHEMTRRDIVSWSTIIAGYSQGGH 399

Query: 267 MESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCA 326
           +  A +L + M  + P                               +P +   +S L A
Sbjct: 400 VSEAFELLSWMRMEGP-------------------------------KPTEFALASVLSA 428

Query: 327 CASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSML 386
           C ++  L+HGKQ+H +++        +V+S+LI+MY KCG + +  ++FD  +N ++ + 
Sbjct: 429 CGNMAILEHGKQLHAYVLSIGLEHTAMVLSALINMYCKCGSIEEASRIFDAAEN-DDIVS 487

Query: 387 WNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMT 446
           W  MI+   +HGY  + I LF  + R  ++PD +T   +L+AC+H+GLV  G  YF +M+
Sbjct: 488 WTAMINGYAEHGYSREVIDLFEKIPRVGLRPDSVTFIGVLSACSHAGLVDLGFRYFNAMS 547

Query: 447 HDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMG 506
               I P++EH+ C+I+LL +AG      + +E MP+  D  +W+ L   CR+HG+++ G
Sbjct: 548 KKYQISPSKEHYGCMIDLLCRAGRLSDAEHMIEAMPFHRDDVVWSTLLRACRVHGDVERG 607

Query: 507 RKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENK 566
           R+  ++++   P  + TH  L++IY++ GK R    +R+L+  +   KE   SWI++++ 
Sbjct: 608 RRTAERILQLEPNCAGTHITLANIYASKGKWREAADIRKLMKSKGVIKEPGWSWIKVKDL 667

Query: 567 VHAFSVSDSLHPMRDVLYSVLEQLAGQ 593
           V AF   D  HP  + +Y++L+ LA +
Sbjct: 668 VFAFVAGDRSHPQGEDIYNMLDLLASR 694



 Score =  154 bits (390), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 110/447 (24%), Positives = 208/447 (46%), Gaps = 61/447 (13%)

Query: 101 CG--SDVDARKVFDKIPVK-----NLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSW 153
           CG  SDV+  ++     VK     ++F  + +L  Y   G +   R +F  M  R+VVSW
Sbjct: 126 CGLNSDVNYGELLHGYAVKTGLVNSVFVGSALLDMYTKNGKIFEGRRVFHEMPMRNVVSW 185

Query: 154 NTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLV 213
             +I G  ++G  +E L ++  + R  +  + ++FA  L  C     L   R++H Q + 
Sbjct: 186 TAIITGLVRAGYNKEALVYFSEMWRSRVEYDSYTFAIALKACADSGALNYGREIHAQAMK 245

Query: 214 TGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKL 273
            GF  +  +++++   Y KCG+L     LF++   RDV++WTT+++   ++G  E A + 
Sbjct: 246 KGFDVSSFVANTLATMYNKCGKLEYGLTLFEKMSMRDVVSWTTIITTLVQMGQEECAVQA 305

Query: 274 FNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSL 333
           F  M E +                               + PN++TF++ +  CA++  +
Sbjct: 306 FIRMRESD-------------------------------VSPNEYTFAAVISGCANLARI 334

Query: 334 KHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVF-DLTDNKENSMLWNTMIS 392
           + G+Q+H  ++     ++  V +S++ MY+KCG L     +F ++T  + + + W+T+I+
Sbjct: 335 EWGEQLHALILHLGLAASLSVENSIMTMYAKCGQLTSSSVIFHEMT--RRDIVSWSTIIA 392

Query: 393 ALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGII 452
             +Q G+  +A  L   M     KP +  LA +L+AC +  +++ G        H   + 
Sbjct: 393 GYSQGGHVSEAFELLSWMRMEGPKPTEFALASVLSACGNMAILEHG-----KQLHAYVLS 447

Query: 453 PNQEHHACLIELLAQAGCSDQLMNQLEKM--PYEHDSYL-WNALHGVCRIHGNIDMG--R 507
              EH A ++  L    C    + +  ++    E+D  + W A+     I+G  + G  R
Sbjct: 448 IGLEHTAMVLSALINMYCKCGSIEEASRIFDAAENDDIVSWTAM-----INGYAEHGYSR 502

Query: 508 KVVDQL-----IDQNPQSSATHGLLSS 529
           +V+D       +   P S    G+LS+
Sbjct: 503 EVIDLFEKIPRVGLRPDSVTFIGVLSA 529


>gi|359484390|ref|XP_002281719.2| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31430-like [Vitis vinifera]
          Length = 662

 Score =  324 bits (831), Expect = 8e-86,   Method: Compositional matrix adjust.
 Identities = 169/474 (35%), Positives = 277/474 (58%), Gaps = 8/474 (1%)

Query: 123 NNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLK-FYKVLRRFSI 181
           N+++  YA +G +++ R +F+ M +RDVVSWN +I GY K    E+ +  F ++ ++ S+
Sbjct: 171 NSLMDMYAEVGRVQNLRQVFEEMPQRDVVSWNVLISGYVKCRRYEDAVDVFRRMQQQSSL 230

Query: 182 SCNEFSFAGILTICVKLEELKLTRQVHGQVLVT-GFLSNVVISSSIVDAYAKCGELSDAR 240
             NE +    L+ C+ L+ L+L +++H  V    GF   + I +++VD Y KCG LS AR
Sbjct: 231 RPNEATVVSTLSACIALKMLELGKEIHRYVREQLGF--TIKIGNALVDMYCKCGHLSIAR 288

Query: 241 RLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQK 300
            +F++   + V+ WT+MVSGY   G ++ A +LF   P ++ V WT +I GY +      
Sbjct: 289 EIFNDMPIKTVICWTSMVSGYVNCGQLDEARELFERSPVRDVVLWTAMINGYVQFNRFDD 348

Query: 301 ALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLID 360
           A+ LF  M I R+ P++ T  + L  CA + +L+ GK +HG++       + +V ++LI+
Sbjct: 349 AVALFREMQIKRVSPDRFTLVALLTGCAQLGTLEQGKWIHGYIDENKIMIDAVVGTALIE 408

Query: 361 MYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKI 420
           MY+KCG +    ++F+    K+ +  W ++I  L  +G   +A+ LF +MV++ VKPD I
Sbjct: 409 MYAKCGFIEKSLEIFNGLKEKDTAS-WTSIICGLAMNGKTSKALELFAEMVQTGVKPDDI 467

Query: 421 TLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEK 480
           T   +L+AC+H GLV+EG  +F SMT    I P  EH+ CLI+LL +AG  D+    +EK
Sbjct: 468 TFIGVLSACSHGGLVEEGRKHFRSMTAVYQIEPKLEHYGCLIDLLGRAGQLDEAEELIEK 527

Query: 481 MPYEHDSY---LWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKG 537
            P  ++     L+ AL   CR HGN++MG +V  +L+      S+ H LL++IY++  + 
Sbjct: 528 SPNVNNEVIVPLYGALLSACRTHGNVEMGERVAKRLVGIESGDSSVHTLLANIYASADRW 587

Query: 538 RLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLA 591
             V KVR+ + +   KK    S +E+   VH F V D+ HP    +YS+L+ +A
Sbjct: 588 EDVTKVRRKMKDLGVKKVPGCSSVEVNGIVHEFLVGDASHPEMREIYSMLDSIA 641



 Score =  162 bits (409), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 110/422 (26%), Positives = 194/422 (45%), Gaps = 61/422 (14%)

Query: 45  QRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSD 104
           Q  +R    T+   L  C   K L+LGK +H +++  ++   T  + N L+ MY KCG  
Sbjct: 227 QSSLRPNEATVVSTLSACIALKMLELGKEIHRYVR--EQLGFTIKIGNALVDMYCKCGHL 284

Query: 105 VDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSG 164
             AR++F+ +P+K +  + +M+SGY N G +  AR LF+    RDVV W  MI GY +  
Sbjct: 285 SIAREIFNDMPIKTVICWTSMVSGYVNCGQLDEARELFERSPVRDVVLWTAMINGYVQFN 344

Query: 165 AVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISS 224
             ++ +  ++ ++   +S + F+   +LT C +L  L+  + +HG +     + + V+ +
Sbjct: 345 RFDDAVALFREMQIKRVSPDRFTLVALLTGCAQLGTLEQGKWIHGYIDENKIMIDAVVGT 404

Query: 225 SIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVS 284
           ++++ YAKCG +  +  +F+    +D  +WT+++ G A                      
Sbjct: 405 ALIEMYAKCGFIEKSLEIFNGLKEKDTASWTSIICGLA---------------------- 442

Query: 285 WTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLI 344
                     NG   KALELF  M+   ++P+  TF   L AC+           HG L+
Sbjct: 443 ---------MNGKTSKALELFAEMVQTGVKPDDITFIGVLSACS-----------HGGLV 482

Query: 345 ---RTNFRSNTIV---------MSSLIDMYSKCGCLNDGRQVFDLTDNKENSM---LWNT 389
              R +FRS T V            LID+  + G L++  ++ + + N  N +   L+  
Sbjct: 483 EEGRKHFRSMTAVYQIEPKLEHYGCLIDLLGRAGQLDEAEELIEKSPNVNNEVIVPLYGA 542

Query: 390 MISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDL 449
           ++SA   HG  E   R+   +V   ++    ++  +L     S    E +T       DL
Sbjct: 543 LLSACRTHGNVEMGERVAKRLV--GIESGDSSVHTLLANIYASADRWEDVTKVRRKMKDL 600

Query: 450 GI 451
           G+
Sbjct: 601 GV 602



 Score =  132 bits (333), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 105/465 (22%), Positives = 207/465 (44%), Gaps = 76/465 (16%)

Query: 131 NLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAG 190
           ++G + +A  +F+ +    +  +N +I  + K+G+  + +  ++ LR   +S + F++  
Sbjct: 78  SIGNLHYAERIFNYIDIPGLFIYNLVIKAFTKNGSFRKAVLLFRQLREEGLSPDNFTYPF 137

Query: 191 ILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARD 250
           +      L E++   +V+G V+ +G   +  + +S++D YA+ G + + R          
Sbjct: 138 VFKAIGCLGEVREGEKVYGFVVKSGLEFDTYVCNSLMDMYAEVGRVQNLR---------- 187

Query: 251 VLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMI 310
                                ++F EMP+++ VSW  LI+GY +    + A+++F RM  
Sbjct: 188 ---------------------QVFEEMPQRDVVSWNVLISGYVKCRRYEDAVDVFRRMQQ 226

Query: 311 L-RIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLN 369
              +RPN+ T  S L AC ++  L+ GK++H + +R        + ++L+DMY KCG L+
Sbjct: 227 QSSLRPNEATVVSTLSACIALKMLELGKEIHRY-VREQLGFTIKIGNALVDMYCKCGHLS 285

Query: 370 DGRQVFD----------------------LTDNKE--------NSMLWNTMISALTQHGY 399
             R++F+                      L + +E        + +LW  MI+   Q   
Sbjct: 286 IAREIFNDMPIKTVICWTSMVSGYVNCGQLDEARELFERSPVRDVVLWTAMINGYVQFNR 345

Query: 400 DEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHA 459
            + A+ LF +M    V PD+ TL  +L  C   G +++G  +      +  I+ +     
Sbjct: 346 FDDAVALFREMQIKRVSPDRFTLVALLTGCAQLGTLEQG-KWIHGYIDENKIMIDAVVGT 404

Query: 460 CLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQN-- 517
            LIE+ A+ G  ++ +     +  E D+  W ++     ++G      ++  +++     
Sbjct: 405 ALIEMYAKCGFIEKSLEIFNGLK-EKDTASWTSIICGLAMNGKTSKALELFAEMVQTGVK 463

Query: 518 PQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIE 562
           P      G+L    SA   G LVE+ R     + F+   A+  IE
Sbjct: 464 PDDITFIGVL----SACSHGGLVEEGR-----KHFRSMTAVYQIE 499



 Score = 52.4 bits (124), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 47/200 (23%), Positives = 91/200 (45%), Gaps = 9/200 (4%)

Query: 319 TFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYS--KCGCLNDGRQVFD 376
           T  SC+    +  S++H KQ+   ++RT F  +   ++  +   +    G L+   ++F+
Sbjct: 31  TKKSCIFLLKNCKSMQHLKQIQTQILRTGFHQSGDTLNKFMVCCTDPSIGNLHYAERIFN 90

Query: 377 LTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQ 436
             D      ++N +I A T++G   +A+ LF  +    + PD  T   +  A    G V+
Sbjct: 91  YID-IPGLFIYNLVIKAFTKNGSFRKAVLLFRQLREEGLSPDNFTYPFVFKAIGCLGEVR 149

Query: 437 EGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNAL--- 493
           EG   +  +    G+  +      L+++ A+ G    L    E+MP + D   WN L   
Sbjct: 150 EGEKVYGFVVKS-GLEFDTYVCNSLMDMYAEVGRVQNLRQVFEEMP-QRDVVSWNVLISG 207

Query: 494 HGVCRIHGN-IDMGRKVVDQ 512
           +  CR + + +D+ R++  Q
Sbjct: 208 YVKCRRYEDAVDVFRRMQQQ 227


>gi|326488767|dbj|BAJ97995.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 919

 Score =  324 bits (831), Expect = 8e-86,   Method: Compositional matrix adjust.
 Identities = 176/570 (30%), Positives = 302/570 (52%), Gaps = 69/570 (12%)

Query: 25  LSLISKGQLSEAISSLDLLAQ---RGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLT 81
           L L++ GQ+S+   S DL  Q    G+R    T   +L+ C  +  + LG+++HL L + 
Sbjct: 315 LMLVAYGQISDLAKSFDLFCQMVAAGVRPNEFTYPCLLRTCTYAGEINLGEQIHL-LSIK 373

Query: 82  QRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNL 141
                  ++S  LI MY K                                G +  AR +
Sbjct: 374 TGFESDMYVSGVLIDMYSK-------------------------------YGWLDKARRI 402

Query: 142 FDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEEL 201
            + +  +DVVSW +MI GY +    +E L+ +K ++ F I  +    A  ++ C  ++ +
Sbjct: 403 LEVLEAKDVVSWTSMIAGYVQHEFCKEALETFKDMQLFGIWPDNIGLASAISACAGIKAM 462

Query: 202 KLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGY 261
           +  +Q+H +V V+G+                               + DV  W  +V+ Y
Sbjct: 463 RQGQQIHSRVYVSGY-------------------------------SADVSIWNALVNLY 491

Query: 262 AKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFS 321
           A+ G  + A  LF  +  K+ ++W  +++G+ ++GL ++ALE+F +M    ++ N  TF 
Sbjct: 492 ARCGRSKEAFSLFEAIEHKDKITWNGMVSGFAQSGLYEEALEVFIKMYQAGVKYNVFTFV 551

Query: 322 SCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGR-QVFDLTDN 380
           S + A A++  +K GKQ+H  +I+T   S T V ++LI +Y KCG + D + Q F++++ 
Sbjct: 552 SSISASANLADIKQGKQIHATVIKTGCTSETEVANALISLYGKCGSIEDAKMQFFEMSER 611

Query: 381 KENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLT 440
             N + WNT+I++ +QHG+  +A+ LF  M +  +KP+ +T   +L AC+H GLV+EGL 
Sbjct: 612 --NHVSWNTIITSCSQHGWGLEALDLFDQMKQEGLKPNDVTFIGVLAACSHVGLVEEGLG 669

Query: 441 YFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIH 500
           YF+SM+ + GI P  +H+AC++++L +AG  D+    +E+MP   ++ +W  L   CR+H
Sbjct: 670 YFKSMSSEHGIHPRPDHYACVVDILGRAGQLDRARKFVEEMPVSANAMVWRTLLSACRVH 729

Query: 501 GNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISW 560
            NI++G      L++  P  SA++ LLS+ Y+  GK    + VR+++ +R  +KE   SW
Sbjct: 730 KNIEIGELAAKYLLELEPHDSASYVLLSNAYAVTGKWACRDHVRKMMKDRGVRKEPGRSW 789

Query: 561 IEIENKVHAFSVSDSLHPMRDVLYSVLEQL 590
           IE++N VHAF V D LHP+   +Y  L  L
Sbjct: 790 IEVKNVVHAFFVGDRLHPLAHQIYKYLADL 819



 Score =  166 bits (420), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 109/379 (28%), Positives = 184/379 (48%), Gaps = 50/379 (13%)

Query: 123 NNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSIS 182
           N ++  YA  G+++ AR +F+ ++ RD VSW  M+ GYA++G  EE +  Y  +    + 
Sbjct: 81  NLLIDLYAKKGLVQRARRVFEQLSARDNVSWVAMLSGYARNGLGEEAVGLYHQMHCSGVV 140

Query: 183 CNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRL 242
              +  + +L+ C K    +  R VH QV   G  S  V+ ++++  Y + G LS A R+
Sbjct: 141 PTPYVLSSVLSACTKAALFEQGRLVHAQVYKQGSCSETVVGNALIALYLRFGSLSLAERV 200

Query: 243 FDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKAL 302
                                          F+EMP  + V++ TLI+ + + G G+ AL
Sbjct: 201 -------------------------------FSEMPYCDRVTFNTLISRHAQCGNGESAL 229

Query: 303 ELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMY 362
           E+F  M +    P+  T +S L ACASI  L  GKQ+H +L++     + I+  SL+D+Y
Sbjct: 230 EIFEEMRLSGWTPDCVTIASLLAACASIGDLNKGKQLHSYLLKAGMSPDYIIEGSLLDLY 289

Query: 363 SKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITL 422
            KCG + +  ++F   D + N +LWN M+ A  Q     ++  LF  MV + V+P++ T 
Sbjct: 290 VKCGVIVEALEIFKSGD-RTNVVLWNLMLVAYGQISDLAKSFDLFCQMVAAGVRPNEFTY 348

Query: 423 AVILNACTHSGLVQEG--------LTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQL 474
             +L  CT++G +  G         T FES  +  G+         LI++ ++ G  D+ 
Sbjct: 349 PCLLRTCTYAGEINLGEQIHLLSIKTGFESDMYVSGV---------LIDMYSKYGWLDKA 399

Query: 475 MNQLEKMPYEHDSYLWNAL 493
              LE +  + D   W ++
Sbjct: 400 RRILEVLEAK-DVVSWTSM 417



 Score =  155 bits (391), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 110/459 (23%), Positives = 199/459 (43%), Gaps = 66/459 (14%)

Query: 35  EAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHL 94
           EA+     +   G+      L+ +L  C ++   + G+ VH  +   Q     T + N L
Sbjct: 126 EAVGLYHQMHCSGVVPTPYVLSSVLSACTKAALFEQGRLVHAQV-YKQGSCSETVVGNAL 184

Query: 95  ISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWN 154
           I++Y + GS                               +  A  +F  M   D V++N
Sbjct: 185 IALYLRFGS-------------------------------LSLAERVFSEMPYCDRVTFN 213

Query: 155 TMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVT 214
           T+I  +A+ G  E  L+ ++ +R    + +  + A +L  C  + +L   +Q+H  +L  
Sbjct: 214 TLISRHAQCGNGESALEIFEEMRLSGWTPDCVTIASLLAACASIGDLNKGKQLHSYLLKA 273

Query: 215 GFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLF 274
           G   + +I  S++D Y KCG + +A  +F   D  +V+ W  M+  Y ++ D+       
Sbjct: 274 GMSPDYIIEGSLLDLYVKCGVIVEALEIFKSGDRTNVVLWNLMLVAYGQISDL------- 326

Query: 275 NEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLK 334
                                    K+ +LF +M+   +RPN+ T+   L  C     + 
Sbjct: 327 ------------------------AKSFDLFCQMVAAGVRPNEFTYPCLLRTCTYAGEIN 362

Query: 335 HGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISAL 394
            G+Q+H   I+T F S+  V   LIDMYSK G L+  R++ ++ + K + + W +MI+  
Sbjct: 363 LGEQIHLLSIKTGFESDMYVSGVLIDMYSKYGWLDKARRILEVLEAK-DVVSWTSMIAGY 421

Query: 395 TQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPN 454
            QH + ++A+  F DM    + PD I LA  ++AC     +++G     S  +  G   +
Sbjct: 422 VQHEFCKEALETFKDMQLFGIWPDNIGLASAISACAGIKAMRQG-QQIHSRVYVSGYSAD 480

Query: 455 QEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNAL 493
                 L+ L A+ G S +  +  E + ++ D   WN +
Sbjct: 481 VSIWNALVNLYARCGRSKEAFSLFEAIEHK-DKITWNGM 518



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 86/326 (26%), Positives = 142/326 (43%), Gaps = 34/326 (10%)

Query: 145 MAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICV-KLEELKL 203
           M  R   S N  + G+      E+ L  +    R         FA  L  C   ++   L
Sbjct: 1   MTRRAAASLNKSLTGFLAHEDPEKLLSLFAAKVRQCRGLGSVDFACALRECRGSVKHWPL 60

Query: 204 TRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAK 263
              +H + +  G   + +  + ++D YAK G +  ARR+F++  ARD ++W  M+SGYA 
Sbjct: 61  VPVIHAKAITCGLGEDRIAGNLLIDLYAKKGLVQRARRVFEQLSARDNVSWVAMLSGYA- 119

Query: 264 LGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSC 323
                                         RNGLG++A+ L+ +M    + P  +  SS 
Sbjct: 120 ------------------------------RNGLGEEAVGLYHQMHCSGVVPTPYVLSSV 149

Query: 324 LCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKEN 383
           L AC      + G+ VH  + +    S T+V ++LI +Y + G L+   +VF      + 
Sbjct: 150 LSACTKAALFEQGRLVHAQVYKQGSCSETVVGNALIALYLRFGSLSLAERVFSEMPYCDR 209

Query: 384 SMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFE 443
            + +NT+IS   Q G  E A+ +F +M  S   PD +T+A +L AC   G + +G     
Sbjct: 210 -VTFNTLISRHAQCGNGESALEIFEEMRLSGWTPDCVTIASLLAACASIGDLNKG-KQLH 267

Query: 444 SMTHDLGIIPNQEHHACLIELLAQAG 469
           S     G+ P+      L++L  + G
Sbjct: 268 SYLLKAGMSPDYIIEGSLLDLYVKCG 293


>gi|15217508|ref|NP_172412.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806401|sp|Q56XI1.2|PPR25_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g09410
 gi|3482916|gb|AAC33201.1| Hypothetical protein [Arabidopsis thaliana]
 gi|91805759|gb|ABE65608.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332190317|gb|AEE28438.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 705

 Score =  324 bits (831), Expect = 8e-86,   Method: Compositional matrix adjust.
 Identities = 186/562 (33%), Positives = 304/562 (54%), Gaps = 59/562 (10%)

Query: 92  NHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVV 151
           N +++ YF      DARK+FD++P +N+ S+N ++SGY   G +  AR +FD M ER+VV
Sbjct: 52  NSMVAGYFANLMPRDARKLFDEMPDRNIISWNGLVSGYMKNGEIDEARKVFDLMPERNVV 111

Query: 152 SWNTMIIGYAKSGAVE--EGLKFYKVLRRFSISCN----EFSFAGILTICVKLEEL---- 201
           SW  ++ GY  +G V+  E L F+K+  +  +S       F   G +    KL E+    
Sbjct: 112 SWTALVKGYVHNGKVDVAESL-FWKMPEKNKVSWTVMLIGFLQDGRIDDACKLYEMIPDK 170

Query: 202 ---KLTRQVHG-----------QVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETD 247
                T  +HG           ++       +V+  +++V  Y +   + DAR++FD   
Sbjct: 171 DNIARTSMIHGLCKEGRVDEAREIFDEMSERSVITWTTMVTGYGQNNRVDDARKIFDVMP 230

Query: 248 ARDVLTWTTMVSGYAKLGDMESASKLFNEMP----------------------------- 278
            +  ++WT+M+ GY + G +E A +LF  MP                             
Sbjct: 231 EKTEVSWTSMLMGYVQNGRIEDAEELFEVMPVKPVIACNAMISGLGQKGEIAKARRVFDS 290

Query: 279 --EKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHG 336
             E+N  SW T+I  + RNG   +AL+LF  M    +RP   T  S L  CAS+ SL HG
Sbjct: 291 MKERNDASWQTVIKIHERNGFELEALDLFILMQKQGVRPTFPTLISILSVCASLASLHHG 350

Query: 337 KQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQ 396
           KQVH  L+R  F  +  V S L+ MY KCG L   + +FD   +K + ++WN++IS    
Sbjct: 351 KQVHAQLVRCQFDVDVYVASVLMTMYIKCGELVKSKLIFDRFPSK-DIIMWNSIISGYAS 409

Query: 397 HGYDEQAIRLFHDMVRS-SVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQ 455
           HG  E+A+++F +M  S S KP+++T    L+AC+++G+V+EGL  +ESM    G+ P  
Sbjct: 410 HGLGEEALKVFCEMPLSGSTKPNEVTFVATLSACSYAGMVEEGLKIYESMESVFGVKPIT 469

Query: 456 EHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLID 515
            H+AC++++L +AG  ++ M  ++ M  E D+ +W +L G CR H  +D+      +LI+
Sbjct: 470 AHYACMVDMLGRAGRFNEAMEMIDSMTVEPDAAVWGSLLGACRTHSQLDVAEFCAKKLIE 529

Query: 516 QNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSD- 574
             P++S T+ LLS++Y++ G+   V ++R+L+  R  +K    SW E+ENKVHAF+    
Sbjct: 530 IEPENSGTYILLSNMYASQGRWADVAELRKLMKTRLVRKSPGCSWTEVENKVHAFTRGGI 589

Query: 575 SLHPMRDVLYSVLEQLAGQMGE 596
           + HP ++ +  +L++L G + E
Sbjct: 590 NSHPEQESILKILDELDGLLRE 611



 Score =  105 bits (262), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 82/329 (24%), Positives = 147/329 (44%), Gaps = 64/329 (19%)

Query: 123 NNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSIS 182
           N  ++  + +G +  AR LFD+   + + SWN+M+ GY                      
Sbjct: 21  NVRITHLSRIGKIHEARKLFDSCDSKSISSWNSMVAGY---------------------- 58

Query: 183 CNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRL 242
                FA ++      +  KL  ++  +        N++  + +V  Y K GE+ +AR++
Sbjct: 59  -----FANLMP----RDARKLFDEMPDR--------NIISWNGLVSGYMKNGEIDEARKV 101

Query: 243 FDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKAL 302
           FD    R+V++WT +V GY   G ++ A  LF +MPEKN VSWT ++ G+ ++G    A 
Sbjct: 102 FDLMPERNVVSWTALVKGYVHNGKVDVAESLFWKMPEKNKVSWTVMLIGFLQDGRIDDAC 161

Query: 303 ELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFL--IRTNF----RSNTIVMS 356
           +L+  +      P++   +          S+ HG    G +   R  F      + I  +
Sbjct: 162 KLYEMI------PDKDNIAR--------TSMIHGLCKEGRVDEAREIFDEMSERSVITWT 207

Query: 357 SLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVK 416
           +++  Y +   ++D R++FD+   K   + W +M+    Q+G  E A  LF  M    VK
Sbjct: 208 TMVTGYGQNNRVDDARKIFDVMPEK-TEVSWTSMLMGYVQNGRIEDAEELFEVM---PVK 263

Query: 417 PDKITLAVILNACTHSGLVQEGLTYFESM 445
           P  I    +++     G + +    F+SM
Sbjct: 264 P-VIACNAMISGLGQKGEIAKARRVFDSM 291



 Score = 82.0 bits (201), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 75/283 (26%), Positives = 134/283 (47%), Gaps = 27/283 (9%)

Query: 35  EAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHL 94
           EA+    L+ ++G+R    TL  IL  CA   SL  GK+VH  L   Q      ++++ L
Sbjct: 314 EALDLFILMQKQGVRPTFPTLISILSVCASLASLHHGKQVHAQLVRCQFDV-DVYVASVL 372

Query: 95  ISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNM-----AERD 149
           ++MY KCG  V ++ +FD+ P K++  +N+++SGYA+ G+ + A  +F  M      + +
Sbjct: 373 MTMYIKCGELVKSKLIFDRFPSKDIIMWNSIISGYASHGLGEEALKVFCEMPLSGSTKPN 432

Query: 150 VVSWNTMIIGYAKSGAVEEGLKFYKVLRR-FSISCNEFSFAGILTICVKLE------ELK 202
            V++   +   + +G VEEGLK Y+ +   F +      +A ++ +  +        E+ 
Sbjct: 433 EVTFVATLSACSYAGMVEEGLKIYESMESVFGVKPITAHYACMVDMLGRAGRFNEAMEMI 492

Query: 203 LTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYA 262
            +  V     V G L     + S +D    C     A++L  E +  +  T+  + + YA
Sbjct: 493 DSMTVEPDAAVWGSLLGACRTHSQLDVAEFC-----AKKLI-EIEPENSGTYILLSNMYA 546

Query: 263 KLGDMESASKLFNEMP----EKNP-VSWTTL---IAGYTRNGL 297
             G     ++L   M      K+P  SWT +   +  +TR G+
Sbjct: 547 SQGRWADVAELRKLMKTRLVRKSPGCSWTEVENKVHAFTRGGI 589


>gi|15223809|ref|NP_177827.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75098688|sp|O49287.1|PP127_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At1g77010, mitochondrial; Flags: Precursor
 gi|2829915|gb|AAC00623.1| Hypothetical protein [Arabidopsis thaliana]
 gi|332197804|gb|AEE35925.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 695

 Score =  324 bits (830), Expect = 9e-86,   Method: Compositional matrix adjust.
 Identities = 172/527 (32%), Positives = 302/527 (57%), Gaps = 3/527 (0%)

Query: 36  AISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLI 95
           A  +L L  +      A TL  +L+ CAE ++LK GK++H  + +   +  +  +++ L+
Sbjct: 171 AEEALRLFKELNFSADAITLTTVLKACAELEALKCGKQIHAQILIGGVECDSK-MNSSLV 229

Query: 96  SMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNT 155
           ++Y KCG    A  + ++I   +  S + ++SGYAN G +  +R LFD  + R V+ WN+
Sbjct: 230 NVYAKCGDLRMASYMLEQIREPDDHSLSALISGYANCGRVNESRGLFDRKSNRCVILWNS 289

Query: 156 MIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTG 215
           MI GY  +    E L  +  +R  +   +  + A ++  C+ L  L+  +Q+H      G
Sbjct: 290 MISGYIANNMKMEALVLFNEMRNETRE-DSRTLAAVINACIGLGFLETGKQMHCHACKFG 348

Query: 216 FLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFN 275
            + ++V++S+++D Y+KCG   +A +LF E ++ D +   +M+  Y   G ++ A ++F 
Sbjct: 349 LIDDIVVASTLLDMYSKCGSPMEACKLFSEVESYDTILLNSMIKVYFSCGRIDDAKRVFE 408

Query: 276 EMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKH 335
            +  K+ +SW ++  G+++NG   + LE F +M  L +  ++ + SS + ACASI SL+ 
Sbjct: 409 RIENKSLISWNSMTNGFSQNGCTVETLEYFHQMHKLDLPTDEVSLSSVISACASISSLEL 468

Query: 336 GKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALT 395
           G+QV          S+ +V SSLID+Y KCG +  GR+VFD T  K + + WN+MIS   
Sbjct: 469 GEQVFARATIVGLDSDQVVSSSLIDLYCKCGFVEHGRRVFD-TMVKSDEVPWNSMISGYA 527

Query: 396 QHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQ 455
            +G   +AI LF  M  + ++P +IT  V+L AC + GLV+EG   FESM  D G +P++
Sbjct: 528 TNGQGFEAIDLFKKMSVAGIRPTQITFMVVLTACNYCGLVEEGRKLFESMKVDHGFVPDK 587

Query: 456 EHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLID 515
           EH +C+++LLA+AG  ++ +N +E+MP++ D  +W+++   C  +G   MG+K  +++I+
Sbjct: 588 EHFSCMVDLLARAGYVEEAINLVEEMPFDVDGSMWSSILRGCVANGYKAMGKKAAEKIIE 647

Query: 516 QNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIE 562
             P++S  +  LS+I++  G       VR+L+ E    K    SW +
Sbjct: 648 LEPENSVAYVQLSAIFATSGDWESSALVRKLMRENNVTKNPGSSWTD 694



 Score =  204 bits (519), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 132/498 (26%), Positives = 236/498 (47%), Gaps = 69/498 (13%)

Query: 58  ILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVK 117
           +LQ C+      L ++ +  L      +    ++NHL+ MY + G    AR +FD++P +
Sbjct: 32  LLQSCSSRNRETLWRQTNGLLLKKGFLSSIVIVANHLLQMYSRSGKMGIARNLFDEMPDR 91

Query: 118 NLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAV----------- 166
           N FS+N M+ GY N G    +   FD M ERD  SWN ++ G+AK+G +           
Sbjct: 92  NYFSWNTMIEGYMNSGEKGTSLRFFDMMPERDGYSWNVVVSGFAKAGELSVARRLFNAMP 151

Query: 167 --------------------EEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQ 206
                               EE L+ +K L   + S +  +   +L  C +LE LK  +Q
Sbjct: 152 EKDVVTLNSLLHGYILNGYAEEALRLFKEL---NFSADAITLTTVLKACAELEALKCGKQ 208

Query: 207 VHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGD 266
           +H Q+L+ G   +  ++SS+V+ YAKCG+L  A  + ++    D  + + ++SGYA  G 
Sbjct: 209 IHAQILIGGVECDSKMNSSLVNVYAKCGDLRMASYMLEQIREPDDHSLSALISGYANCGR 268

Query: 267 MESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCA 326
           +  +  LF+    +  + W ++I+GY  N +  +AL LF  M     R +  T ++ + A
Sbjct: 269 VNESRGLFDRKSNRCVILWNSMISGYIANNMKMEALVLFNEMRN-ETREDSRTLAAVINA 327

Query: 327 CASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGC------------------- 367
           C  +  L+ GKQ+H    +     + +V S+L+DMYSKCG                    
Sbjct: 328 CIGLGFLETGKQMHCHACKFGLIDDIVVASTLLDMYSKCGSPMEACKLFSEVESYDTILL 387

Query: 368 ------------LNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSV 415
                       ++D ++VF+  +NK + + WN+M +  +Q+G   + +  FH M +  +
Sbjct: 388 NSMIKVYFSCGRIDDAKRVFERIENK-SLISWNSMTNGFSQNGCTVETLEYFHQMHKLDL 446

Query: 416 KPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLM 475
             D+++L+ +++AC     ++ G   F   T  +G+  +Q   + LI+L  + G  +   
Sbjct: 447 PTDEVSLSSVISACASISSLELGEQVFARATI-VGLDSDQVVSSSLIDLYCKCGFVEHGR 505

Query: 476 NQLEKMPYEHDSYLWNAL 493
              + M  + D   WN++
Sbjct: 506 RVFDTM-VKSDEVPWNSM 522



 Score =  148 bits (373), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 119/442 (26%), Positives = 208/442 (47%), Gaps = 88/442 (19%)

Query: 156 MIIGYAKSGAVEEGLKFY---KVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVL 212
           MI+ Y  S       +FY     L+   + C  + +  +L  C       L RQ +G +L
Sbjct: 1   MILKYNSS------YRFYLSSSFLQAMEVDCRRY-YVRLLQSCSSRNRETLWRQTNGLLL 53

Query: 213 VTGFLSNVVI-SSSIVDAYAKCGELSDARRLFDETDARDVLTWTTM-------------- 257
             GFLS++VI ++ ++  Y++ G++  AR LFDE   R+  +W TM              
Sbjct: 54  KKGFLSSIVIVANHLLQMYSRSGKMGIARNLFDEMPDRNYFSWNTMIEGYMNSGEKGTSL 113

Query: 258 -----------------VSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQK 300
                            VSG+AK G++  A +LFN MPEK+ V+  +L+ GY  NG  ++
Sbjct: 114 RFFDMMPERDGYSWNVVVSGFAKAGELSVARRLFNAMPEKDVVTLNSLLHGYILNGYAEE 173

Query: 301 ALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLID 360
           AL LF     L    +  T ++ L ACA + +LK GKQ+H  ++      ++ + SSL++
Sbjct: 174 ALRLFKE---LNFSADAITLTTVLKACAELEALKCGKQIHAQILIGGVECDSKMNSSLVN 230

Query: 361 MYSKCGCL-------------------------------NDGRQVFDLTDNKENSMLWNT 389
           +Y+KCG L                               N+ R +FD   N+   +LWN+
Sbjct: 231 VYAKCGDLRMASYMLEQIREPDDHSLSALISGYANCGRVNESRGLFDRKSNR-CVILWNS 289

Query: 390 MISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDL 449
           MIS    +    +A+ LF++M R+  + D  TLA ++NAC   G ++ G           
Sbjct: 290 MISGYIANNMKMEALVLFNEM-RNETREDSRTLAAVINACIGLGFLETG-KQMHCHACKF 347

Query: 450 GIIPNQEHHACLIELLAQAGC---SDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMG 506
           G+I +    + L+++ ++ G    + +L +++E     +D+ L N++  V    G ID  
Sbjct: 348 GLIDDIVVASTLLDMYSKCGSPMEACKLFSEVES----YDTILLNSMIKVYFSCGRIDDA 403

Query: 507 RKVVDQLIDQN--PQSSATHGL 526
           ++V +++ +++    +S T+G 
Sbjct: 404 KRVFERIENKSLISWNSMTNGF 425


>gi|147856413|emb|CAN82500.1| hypothetical protein VITISV_004914 [Vitis vinifera]
          Length = 1408

 Score =  324 bits (830), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 183/549 (33%), Positives = 290/549 (52%), Gaps = 21/549 (3%)

Query: 54   TLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDK 113
            T+  +LQ C +  +L   K++H ++      +  + L N LISMY K G    AR+VFD 
Sbjct: 777  TIVRVLQACGKMGALNAAKQIHGYVFRFGLDSDVS-LCNPLISMYSKNGKLELARRVFDS 835

Query: 114  IPVKNLFSYNNMLSGYANLGMMKHARNLFDNMA----ERDVVSWNTMIIGYAKSGAVEEG 169
            +  +N  S+N+M+S YA LG +  A +LF  +     + D+V+WN ++ G+   G  EE 
Sbjct: 836  MENRNTSSWNSMISSYAALGFLNDAWSLFYELESSDMKPDIVTWNCLLSGHFLHGYKEEV 895

Query: 170  LKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDA 229
            L   + ++      N  S   +L    +L  L + ++ HG VL  GF  +V + +S++D 
Sbjct: 896  LNILQRMQGEGFKPNSSSMTSVLQAISELGFLNMGKETHGYVLRNGFDCDVYVGTSLIDM 955

Query: 230  YAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEK----NPVSW 285
            Y K   L  A+ +FD    R++  W ++VSGY+  G  E A +L N+M ++    + V+W
Sbjct: 956  YVKNHSLXSAQAVFDNMKNRNIFAWNSLVSGYSFKGMFEDALRLLNQMEKEGIKPDLVTW 1015

Query: 286  TTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIR 345
              +I+GY   G  +KA             PN  + +  L ACAS+  L+ GK++H   IR
Sbjct: 1016 NGMISGYAMWGCARKAF-----------MPNSASITCLLRACASLSLLQKGKEIHCLSIR 1064

Query: 346  TNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIR 405
              F  +  V ++LIDMYSK   L +  +VF    NK  +  WN MI      G  ++AI 
Sbjct: 1065 NGFIEDVFVATALIDMYSKSSSLKNAHKVFRRIQNKTLAS-WNCMIMGFAIFGLGKEAIS 1123

Query: 406  LFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELL 465
            +F++M +  V PD IT   +L+AC +SGL+ EG  YF+SM  D  I+P  EH+ C+++LL
Sbjct: 1124 VFNEMQKVGVGPDAITFTALLSACKNSGLIGEGWKYFDSMITDYRIVPRLEHYCCMVDLL 1183

Query: 466  AQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHG 525
             +AG  D+  + +  MP + D+ +W AL G CRIH N+         L    P +SA + 
Sbjct: 1184 GRAGYLDEAWDLIHTMPLKPDATIWGALLGSCRIHKNLXFAETAAKNLFKLEPNNSANYI 1243

Query: 526  LLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYS 585
            L+ ++YS   +   ++ +R+L+     +  Q  SWI+I  +VH FS  +  HP    +Y 
Sbjct: 1244 LMMNLYSIFNRWEDMDHLRELMGAAGVRNRQVWSWIQINQRVHVFSSDEKPHPDAGKIYF 1303

Query: 586  VLEQLAGQM 594
             L QL  +M
Sbjct: 1304 ELYQLVSEM 1312



 Score =  172 bits (436), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 119/462 (25%), Positives = 209/462 (45%), Gaps = 51/462 (11%)

Query: 9    GINRKNLPNNCLIQSFLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSL 68
            G+ R  L  N  ++ F S  S G L   +     L  +G+   +E  +  L+ C     +
Sbjct: 633  GLPRNYLKWNSFVEEFKS--SAGSLHIVLEVFKELHGKGVVFDSEVYSVALKTCTRVMDI 690

Query: 69   KLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSG 128
             LG  +H  L                     K G D+D   V+ +  + N          
Sbjct: 691  WLGMEIHGCL--------------------IKRGFDLD---VYLRCALMNF--------- 718

Query: 129  YANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSF 188
            Y     ++ A  +F  M   + + WN  II   +S  +++G++ ++ ++   +     + 
Sbjct: 719  YGRCWGLEKANQVFHEMPNPEALLWNEAIILNLQSEKLQKGVELFRKMQFSFLKAETATI 778

Query: 189  AGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDA 248
              +L  C K+  L   +Q+HG V   G  S+V + + ++  Y+K G+L  ARR+FD  + 
Sbjct: 779  VRVLQACGKMGALNAAKQIHGYVFRFGLDSDVSLCNPLISMYSKNGKLELARRVFDSMEN 838

Query: 249  RDVLTWTTMVSGYAKLGDMESASKLFNEMP----EKNPVSWTTLIAGYTRNGLGQKALEL 304
            R+  +W +M+S YA LG +  A  LF E+     + + V+W  L++G+  +G  ++ L +
Sbjct: 839  RNTSSWNSMISSYAALGFLNDAWSLFYELESSDMKPDIVTWNCLLSGHFLHGYKEEVLNI 898

Query: 305  FTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSK 364
              RM     +PN  + +S L A + +  L  GK+ HG+++R  F  +  V +SLIDMY K
Sbjct: 899  LQRMQGEGFKPNSSSMTSVLQAISELGFLNMGKETHGYVLRNGFDCDVYVGTSLIDMYVK 958

Query: 365  CGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAV 424
               L   + VFD   N+ N   WN+++S  +  G  E A+RL + M +  +KPD +T   
Sbjct: 959  NHSLXSAQAVFDNMKNR-NIFAWNSLVSGYSFKGMFEDALRLLNQMEKEGIKPDLVTWNG 1017

Query: 425  ILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLA 466
            +++     G  ++              +PN     CL+   A
Sbjct: 1018 MISGYAMWGCARKAF------------MPNSASITCLLRACA 1047



 Score =  124 bits (311), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 86/347 (24%), Positives = 159/347 (45%), Gaps = 34/347 (9%)

Query: 124 NMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKS-GAVEEGLKFYKVLRRFSIS 182
           N++S Y   G    A  +F     R+ + WN+ +  +  S G++   L+ +K L    + 
Sbjct: 612 NLISSYLGFGDFWSAAMVFYVGLPRNYLKWNSFVEEFKSSAGSLHIVLEVFKELHGKGVV 671

Query: 183 CNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRL 242
            +   ++  L  C ++ ++ L  ++HG ++  GF  +V +  ++++ Y +C  L  A   
Sbjct: 672 FDSEVYSVALKTCTRVMDIWLGMEIHGCLIKRGFDLDVYLRCALMNFYGRCWGLEKA--- 728

Query: 243 FDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKAL 302
                                       +++F+EMP    + W   I    ++   QK +
Sbjct: 729 ----------------------------NQVFHEMPNPEALLWNEAIILNLQSEKLQKGV 760

Query: 303 ELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMY 362
           ELF +M    ++    T    L AC  + +L   KQ+HG++ R    S+  + + LI MY
Sbjct: 761 ELFRKMQFSFLKAETATIVRVLQACGKMGALNAAKQIHGYVFRFGLDSDVSLCNPLISMY 820

Query: 363 SKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITL 422
           SK G L   R+VFD  +N+ N+  WN+MIS+    G+   A  LF+++  S +KPD +T 
Sbjct: 821 SKNGKLELARRVFDSMENR-NTSSWNSMISSYAALGFLNDAWSLFYELESSDMKPDIVTW 879

Query: 423 AVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAG 469
             +L+     G  +E L   + M  + G  PN      +++ +++ G
Sbjct: 880 NCLLSGHFLHGYKEEVLNILQRMQGE-GFKPNSSSMTSVLQAISELG 925



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 39/134 (29%), Positives = 69/134 (51%), Gaps = 5/134 (3%)

Query: 44   AQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGS 103
            A++     + ++  +L+ CA    L+ GK +H  L +        F++  LI MY K  S
Sbjct: 1028 ARKAFMPNSASITCLLRACASLSLLQKGKEIHC-LSIRNGFIEDVFVATALIDMYSKSSS 1086

Query: 104  DVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAE----RDVVSWNTMIIG 159
              +A KVF +I  K L S+N M+ G+A  G+ K A ++F+ M +     D +++  ++  
Sbjct: 1087 LKNAHKVFRRIQNKTLASWNCMIMGFAIFGLGKEAISVFNEMQKVGVGPDAITFTALLSA 1146

Query: 160  YAKSGAVEEGLKFY 173
               SG + EG K++
Sbjct: 1147 CKNSGLIGEGWKYF 1160


>gi|255572939|ref|XP_002527400.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223533210|gb|EEF34966.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 621

 Score =  324 bits (830), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 174/564 (30%), Positives = 304/564 (53%), Gaps = 15/564 (2%)

Query: 54  TLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDK 113
           T   +++ CA   S  LGK +H H+ L         + N LI MY K G   DAR +FD+
Sbjct: 44  TFPLVIRACAYMGSFILGKTIHGHV-LEMGFQSHLHVGNELIGMYAKLGRMRDARHLFDR 102

Query: 114 IPVKNLFSYNNMLSGYANLGMMKHARNLFDNMA----ERDVVSWNTMIIGYAKSGAVEEG 169
           + V++  S+N M+S YA       A  +F  M     E ++V+W ++I  YA+SG  EE 
Sbjct: 103 MSVRSYISWNTMVSAYAFNYDCNGALEIFQRMESEGMEPNLVTWTSLISSYARSGWHEEA 162

Query: 170 LKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDA 229
           ++ + ++R   +  +  + A +++IC  L      + +H   +  GF     + S+++  
Sbjct: 163 MELFGLMRMKGVEVSGEALAVVISICADLGAFVRAKIIHEYAVKGGFEEYSFVKSALICV 222

Query: 230 YAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEM------PEKNP- 282
           Y K G+++ A  LF E   + + +W  +++ +A+ G  + A ++F+++      P   P 
Sbjct: 223 YGKHGDVNGAWNLFLEMKNKSLASWNALITSHAEAGLCDEALEIFSQLERSGDCPRLRPN 282

Query: 283 -VSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHG 341
            VSW+ +I G+   G  ++ALELF RM   +I  N  T S+ L  CA + +L  G+++HG
Sbjct: 283 VVSWSAIIDGFASKGREKEALELFRRMQHAKILANAVTISTVLSLCAELAALHLGREIHG 342

Query: 342 FLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDE 401
            ++R    +N +V + L++MY+KCGCL +G  +F+ T+ K+  + WN+MI+    HG   
Sbjct: 343 HVVRAVMVNNILVGNGLVNMYAKCGCLKEGHMIFEKTERKD-LISWNSMITGYGMHGLGM 401

Query: 402 QAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACL 461
            A+  F  M++   KPD +T   +L++C+HSGLV EG   F+ M     I P  EH+AC+
Sbjct: 402 NALETFDQMIKLGFKPDGVTFVAVLSSCSHSGLVHEGRRLFDQMLKKYRIEPQMEHYACM 461

Query: 462 IELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLID-QNPQS 520
           ++LL +AG   +    ++ MP   ++ +W AL   CR+H N ++  +    L +  + ++
Sbjct: 462 VDLLGRAGLLREASEIVKNMPVAPNACVWGALLNSCRMHNNTEIAEETASHLFNLSHRET 521

Query: 521 SATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMR 580
           + T+ LLS+IY+A G+     +VR     +  KK    SWI++E  V+ FS  +++    
Sbjct: 522 TGTYMLLSNIYAASGRWEDSARVRTSAKTKGLKKNPGQSWIKVEKNVYTFSAGNNMQRGF 581

Query: 581 DVLYSVLEQLAGQMGEDAPSLDAD 604
           + ++ +LE+L  QM  +    D D
Sbjct: 582 EQIFEILEELTFQMEREGTVHDTD 605



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 81/280 (28%), Positives = 143/280 (51%), Gaps = 9/280 (3%)

Query: 176 LRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGE 235
           +R+     + F+F  ++  C  +    L + +HG VL  GF S++ + + ++  YAK G 
Sbjct: 33  MRKIGTLGDGFTFPLVIRACAYMGSFILGKTIHGHVLEMGFQSHLHVGNELIGMYAKLGR 92

Query: 236 LSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMP----EKNPVSWTTLIAG 291
           + DAR LFD    R  ++W TMVS YA   D   A ++F  M     E N V+WT+LI+ 
Sbjct: 93  MRDARHLFDRMSVRSYISWNTMVSAYAFNYDCNGALEIFQRMESEGMEPNLVTWTSLISS 152

Query: 292 YTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSN 351
           Y R+G  ++A+ELF  M +  +  +    +  +  CA + +    K +H + ++  F   
Sbjct: 153 YARSGWHEEAMELFGLMRMKGVEVSGEALAVVISICADLGAFVRAKIIHEYAVKGGFEEY 212

Query: 352 TIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMV 411
           + V S+LI +Y K G +N    +F    NK  +  WN +I++  + G  ++A+ +F  + 
Sbjct: 213 SFVKSALICVYGKHGDVNGAWNLFLEMKNKSLAS-WNALITSHAEAGLCDEALEIFSQLE 271

Query: 412 RSS----VKPDKITLAVILNACTHSGLVQEGLTYFESMTH 447
           RS     ++P+ ++ + I++     G  +E L  F  M H
Sbjct: 272 RSGDCPRLRPNVVSWSAIIDGFASKGREKEALELFRRMQH 311



 Score =  145 bits (366), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 94/399 (23%), Positives = 191/399 (47%), Gaps = 44/399 (11%)

Query: 16  PNNCLIQSFLSLISK-GQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRV 74
           PN     S +S  ++ G   EA+    L+  +G+ +  E LA ++  CA+  +    K +
Sbjct: 141 PNLVTWTSLISSYARSGWHEEAMELFGLMRMKGVEVSGEALAVVISICADLGAFVRAKII 200

Query: 75  HLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGM 134
           H +  +       +F+ + LI +Y K G    A  +F ++  K+L S+N +++ +A  G+
Sbjct: 201 HEY-AVKGGFEEYSFVKSALICVYGKHGDVNGAWNLFLEMKNKSLASWNALITSHAEAGL 259

Query: 135 MKHARNLFDNMAER---------DVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNE 185
              A  +F  + ER         +VVSW+ +I G+A  G  +E L+ ++ ++   I  N 
Sbjct: 260 CDEALEIFSQL-ERSGDCPRLRPNVVSWSAIIDGFASKGREKEALELFRRMQHAKILANA 318

Query: 186 FSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDE 245
            + + +L++C +L  L L R++HG V+    ++N+++ + +V+ YAKCG L +   +F++
Sbjct: 319 VTISTVLSLCAELAALHLGREIHGHVVRAVMVNNILVGNGLVNMYAKCGCLKEGHMIFEK 378

Query: 246 TDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELF 305
           T+ +D+++W +M++GY                                 +GLG  ALE F
Sbjct: 379 TERKDLISWNSMITGYGM-------------------------------HGLGMNALETF 407

Query: 306 TRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHG-FLIRTNFRSNTIVMSSLIDMYSK 364
            +M+ L  +P+  TF + L +C+    +  G+++    L +          + ++D+  +
Sbjct: 408 DQMIKLGFKPDGVTFVAVLSSCSHSGLVHEGRRLFDQMLKKYRIEPQMEHYACMVDLLGR 467

Query: 365 CGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQA 403
            G L +  ++        N+ +W  ++++   H   E A
Sbjct: 468 AGLLREASEIVKNMPVAPNACVWGALLNSCRMHNNTEIA 506


>gi|356545843|ref|XP_003541343.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Glycine max]
          Length = 747

 Score =  323 bits (829), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 180/582 (30%), Positives = 318/582 (54%), Gaps = 40/582 (6%)

Query: 23  SFLSLIS----KGQLSEAISSLDLLAQRG-IRLPAETLAFILQQCAESKSLKLGKRVHLH 77
           S+ SLIS    +G L +++ + +L+   G   L    L+ +L   ++   + LG +VH H
Sbjct: 108 SWNSLISAYAGRGFLLQSVKAYNLMLYNGPFNLNRIALSTMLILASKQGCVHLGLQVHGH 167

Query: 78  LKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKH 137
           +     ++   F+ + L+ MY K G    AR+ FD++P KN+  YN +++G      ++ 
Sbjct: 168 VVKFGFQS-YVFVGSPLVDMYSKTGLVFCARQAFDEMPEKNVVMYNTLIAGLMRCSRIED 226

Query: 138 ARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVK 197
           +R LF +M E+D +SW  MI G+ ++G   E +  ++ +R  ++  ++++F  +LT C  
Sbjct: 227 SRQLFYDMQEKDSISWTAMIAGFTQNGLDREAIDLFREMRLENLEMDQYTFGSVLTACGG 286

Query: 198 LEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTM 257
           +  L+  +QVH  ++ T +  N+ + S++VD Y KC  +                     
Sbjct: 287 VMALQEGKQVHAYIIRTDYQDNIFVGSALVDMYCKCKSI--------------------- 325

Query: 258 VSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQ 317
                     +SA  +F +M  KN VSWT ++ GY +NG  ++A+++F  M    I P+ 
Sbjct: 326 ----------KSAETVFRKMNCKNVVSWTAMLVGYGQNGYSEEAVKIFCDMQNNGIEPDD 375

Query: 318 HTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVF-D 376
            T  S + +CA++ SL+ G Q H   + +   S   V ++L+ +Y KCG + D  ++F +
Sbjct: 376 FTLGSVISSCANLASLEEGAQFHCRALVSGLISFITVSNALVTLYGKCGSIEDSHRLFSE 435

Query: 377 LTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQ 436
           ++   E S  W  ++S   Q G   + +RLF  M+    KPDK+T   +L+AC+ +GLVQ
Sbjct: 436 MSYVDEVS--WTALVSGYAQFGKANETLRLFESMLAHGFKPDKVTFIGVLSACSRAGLVQ 493

Query: 437 EGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGV 496
           +G   FESM  +  IIP ++H+ C+I+L ++AG  ++    + KMP+  D+  W +L   
Sbjct: 494 KGNQIFESMIKEHRIIPIEDHYTCMIDLFSRAGRLEEARKFINKMPFSPDAIGWASLLSS 553

Query: 497 CRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQ 556
           CR H N+++G+   + L+   P ++A++ LLSSIY+A GK   V  +R+ + ++  +KE 
Sbjct: 554 CRFHRNMEIGKWAAESLLKLEPHNTASYILLSSIYAAKGKWEEVANLRKGMRDKGLRKEP 613

Query: 557 AISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQMGEDA 598
             SWI+ +N+VH FS  D  +P  D +YS LE+L  +M ++ 
Sbjct: 614 GCSWIKYKNQVHIFSADDQSNPFSDQIYSELEKLNYKMVQEG 655



 Score =  273 bits (699), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 160/500 (32%), Positives = 269/500 (53%), Gaps = 12/500 (2%)

Query: 62  CAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFS 121
           C   K  +  K++H H+ +   + P  FL N+L+S Y K      AR+VFD++P +NL+S
Sbjct: 19  CELLKHCRDTKKIHCHI-IKAFRNPEIFLLNNLVSAYAKFDRITYARRVFDQMPQRNLYS 77

Query: 122 YNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKV-LRRFS 180
           +N +LS Y+ L  +     +F  M  RD+VSWN++I  YA  G + + +K Y + L    
Sbjct: 78  WNTLLSSYSKLACLPEMERVFHAMPTRDMVSWNSLISAYAGRGFLLQSVKAYNLMLYNGP 137

Query: 181 ISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDAR 240
            + N  + + +L +  K   + L  QVHG V+  GF S V + S +VD Y+K G +  AR
Sbjct: 138 FNLNRIALSTMLILASKQGCVHLGLQVHGHVVKFGFQSYVFVGSPLVDMYSKTGLVFCAR 197

Query: 241 RLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQK 300
           + FDE   ++V+ + T+++G  +   +E + +LF +M EK+ +SWT +IAG+T+NGL ++
Sbjct: 198 QAFDEMPEKNVVMYNTLIAGLMRCSRIEDSRQLFYDMQEKDSISWTAMIAGFTQNGLDRE 257

Query: 301 ALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLID 360
           A++LF  M +  +  +Q+TF S L AC  +++L+ GKQVH ++IRT+++ N  V S+L+D
Sbjct: 258 AIDLFREMRLENLEMDQYTFGSVLTACGGVMALQEGKQVHAYIIRTDYQDNIFVGSALVD 317

Query: 361 MYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKI 420
           MY KC  +     VF    N +N + W  M+    Q+GY E+A+++F DM  + ++PD  
Sbjct: 318 MYCKCKSIKSAETVFRKM-NCKNVVSWTAMLVGYGQNGYSEEAVKIFCDMQNNGIEPDDF 376

Query: 421 TLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEK 480
           TL  ++++C +   ++EG   F       G+I        L+ L  + G  +       +
Sbjct: 377 TLGSVISSCANLASLEEG-AQFHCRALVSGLISFITVSNALVTLYGKCGSIEDSHRLFSE 435

Query: 481 MPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQ--NPQSSATHGLLSSIYSALGKGR 538
           M Y  D   W AL       G  +   ++ + ++     P      G+L    SA  +  
Sbjct: 436 MSYV-DEVSWTALVSGYAQFGKANETLRLFESMLAHGFKPDKVTFIGVL----SACSRAG 490

Query: 539 LVEKVRQLINERQFKKEQAI 558
           LV+K  Q+  E   K+ + I
Sbjct: 491 LVQKGNQIF-ESMIKEHRII 509



 Score = 46.2 bits (108), Expect = 0.057,   Method: Compositional matrix adjust.
 Identities = 44/237 (18%), Positives = 108/237 (45%), Gaps = 16/237 (6%)

Query: 327 CASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSML 386
           C  +   +  K++H  +I+        ++++L+  Y+K   +   R+VFD    + N   
Sbjct: 19  CELLKHCRDTKKIHCHIIKAFRNPEIFLLNNLVSAYAKFDRITYARRVFDQMPQR-NLYS 77

Query: 387 WNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMT 446
           WNT++S+ ++     +  R+FH M       D ++   +++A    G + + +  +  M 
Sbjct: 78  WNTLLSSYSKLACLPEMERVFHAMPTR----DMVSWNSLISAYAGRGFLLQSVKAYNLML 133

Query: 447 HDLGIIPNQEHHACLIELLAQAGCSD---QLMNQLEKMPYEHDSYLWNALHGVCRIHGNI 503
           ++     N+   + ++ L ++ GC     Q+   + K  ++   ++ + L  +    G +
Sbjct: 134 YNGPFNLNRIALSTMLILASKQGCVHLGLQVHGHVVKFGFQSYVFVGSPLVDMYSKTGLV 193

Query: 504 DMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISW 560
              R+  D++ ++N        + +++ + L +   +E  RQL  + Q  ++ +ISW
Sbjct: 194 FCARQAFDEMPEKNVV------MYNTLIAGLMRCSRIEDSRQLFYDMQ--EKDSISW 242


>gi|242050128|ref|XP_002462808.1| hypothetical protein SORBIDRAFT_02g032350 [Sorghum bicolor]
 gi|241926185|gb|EER99329.1| hypothetical protein SORBIDRAFT_02g032350 [Sorghum bicolor]
          Length = 638

 Score =  323 bits (829), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 166/476 (34%), Positives = 274/476 (57%), Gaps = 1/476 (0%)

Query: 116 VKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKV 175
           V  +F  N +L  YA+ G +  +R  FD M +R+VVSWN+MI GYA++G   E    +  
Sbjct: 144 VGQVFVGNALLHSYASAGSLGDSRRFFDEMVDRNVVSWNSMIGGYAQAGDTREVCSLFGE 203

Query: 176 LRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGE 235
           +RR     +EF+   +L  C +   L++ R VH ++LV+G   ++++ S++VD Y KCG+
Sbjct: 204 MRRQGFLEDEFTLVSLLIACSQEGNLEIGRLVHCRMLVSGSRVDLILESALVDMYGKCGD 263

Query: 236 LSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRN 295
           L  ARR F+    + V++WT+M+    K G + +A   F+ MPE+N VSW  +I+ Y + 
Sbjct: 264 LWMARRCFEMMPIKSVVSWTSMLCAQTKHGSVNAARCWFDHMPERNIVSWNAMISCYVQR 323

Query: 296 GLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVM 355
           G   +AL+L+ +M    + P++ T  + L A   I  L  GK VH ++    +  +  ++
Sbjct: 324 GQCHEALDLYNQMQSQGLAPDEITLVAVLSASGRIGDLTVGKMVHLYIRDNIYNPDVSLV 383

Query: 356 SSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSV 415
           +SL+DMY+KCG ++    +F    N+ N + WN +I  L  HG     I  F  MV  S 
Sbjct: 384 NSLLDMYAKCGQVDTAISLFSEMCNR-NVVSWNVIIGGLAMHGRALDTITFFRSMVTDSF 442

Query: 416 KPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLM 475
            PD IT   +L+AC+H GL++ G  YFESM H   +    EH+AC+++LL + G  ++ +
Sbjct: 443 APDGITFVALLSACSHGGLLETGQHYFESMRHVYNVKHEVEHYACMVDLLGRRGHLEKAV 502

Query: 476 NQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALG 535
             +++MP + D  +W AL G CRIHGN+ +GR+V+ QL++    S     L+S++     
Sbjct: 503 CLIKEMPMKPDVVVWGALLGACRIHGNVKIGRQVIKQLLELEGISGGLFVLISNLLYETH 562

Query: 536 KGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLA 591
           +   ++++R+L+ E   +K+  +S IEI N +H F V D  H     +Y+V++QL+
Sbjct: 563 QWEDMKRLRKLMKEWGTRKDMGVSSIEINNSIHEFGVEDIRHERSSEIYAVVDQLS 618



 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 114/406 (28%), Positives = 178/406 (43%), Gaps = 71/406 (17%)

Query: 130 ANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFA 189
           A  G++ HAR LFD +   D V +NT+I  Y  S    E L+ ++ + R  I  NEF+  
Sbjct: 57  AGHGVLCHARRLFDGIPGPDRVMYNTIIRAYCNSSCPREALRLHRGMLRRGILPNEFTLP 116

Query: 190 GILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDAR 249
            ++  C   +  +    VHG  L  G +  V + ++++ +YA  G L D+RR FDE   R
Sbjct: 117 FVVKACTIAQAREHALAVHGVALRLGLVGQVFVGNALLHSYASAGSLGDSRRFFDEMVDR 176

Query: 250 DVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMM 309
           +V++W +M+ GYA+ GD      LF EM                     Q  LE      
Sbjct: 177 NVVSWNSMIGGYAQAGDTREVCSLFGEMRR-------------------QGFLE------ 211

Query: 310 ILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLN 369
                 ++ T  S L AC+   +L+ G+ VH  ++ +  R + I+ S+L+DMY KCG L 
Sbjct: 212 ------DEFTLVSLLIACSQEGNLEIGRLVHCRMLVSGSRVDLILESALVDMYGKCGDLW 265

Query: 370 DGRQVFDLTDNKE----NSML--------------------------WNTMISALTQHGY 399
             R+ F++   K      SML                          WN MIS   Q G 
Sbjct: 266 MARRCFEMMPIKSVVSWTSMLCAQTKHGSVNAARCWFDHMPERNIVSWNAMISCYVQRGQ 325

Query: 400 DEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTH----DLGIIPNQ 455
             +A+ L++ M    + PD+ITL  +L+A    G +  G      M H    D    P+ 
Sbjct: 326 CHEALDLYNQMQSQGLAPDEITLVAVLSASGRIGDLTVG-----KMVHLYIRDNIYNPDV 380

Query: 456 EHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHG 501
                L+++ A+ G  D  ++   +M    +   WN + G   +HG
Sbjct: 381 SLVNSLLDMYAKCGQVDTAISLFSEMC-NRNVVSWNVIIGGLAMHG 425



 Score = 89.7 bits (221), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 71/276 (25%), Positives = 121/276 (43%), Gaps = 15/276 (5%)

Query: 248 ARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTR 307
           A D+L  +      A  G +  A +LF+ +P  + V + T+I  Y  +   ++AL L   
Sbjct: 43  ASDLLLASYCALAKAGHGVLCHARRLFDGIPGPDRVMYNTIIRAYCNSSCPREALRLHRG 102

Query: 308 MMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGC 367
           M+   I PN+ T    + AC    + +H   VHG  +R        V ++L+  Y+  G 
Sbjct: 103 MLRRGILPNEFTLPFVVKACTIAQAREHALAVHGVALRLGLVGQVFVGNALLHSYASAGS 162

Query: 368 LNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILN 427
           L D R+ FD   ++ N + WN+MI    Q G   +   LF +M R     D+ TL  +L 
Sbjct: 163 LGDSRRFFDEMVDR-NVVSWNSMIGGYAQAGDTREVCSLFGEMRRQGFLEDEFTLVSLLI 221

Query: 428 ACTHSGLVQEGLTYFESMTHDLGIIPNQE----HHACLIELLAQAGCSDQLMNQ--LEKM 481
           AC+     QEG      + H   ++          + L+++  +  C D  M +   E M
Sbjct: 222 ACS-----QEGNLEIGRLVHCRMLVSGSRVDLILESALVDMYGK--CGDLWMARRCFEMM 274

Query: 482 PYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQN 517
           P +     W ++      HG+++  R   D + ++N
Sbjct: 275 PIK-SVVSWTSMLCAQTKHGSVNAARCWFDHMPERN 309



 Score = 56.2 bits (134), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 38/154 (24%), Positives = 71/154 (46%), Gaps = 5/154 (3%)

Query: 28  ISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPT 87
           + +GQ  EA+   + +  +G+     TL  +L        L +GK VHL+++      P 
Sbjct: 321 VQRGQCHEALDLYNQMQSQGLAPDEITLVAVLSASGRIGDLTVGKMVHLYIR-DNIYNPD 379

Query: 88  TFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMA- 146
             L N L+ MY KCG    A  +F ++  +N+ S+N ++ G A  G        F +M  
Sbjct: 380 VSLVNSLLDMYAKCGQVDTAISLFSEMCNRNVVSWNVIIGGLAMHGRALDTITFFRSMVT 439

Query: 147 ---ERDVVSWNTMIIGYAKSGAVEEGLKFYKVLR 177
                D +++  ++   +  G +E G  +++ +R
Sbjct: 440 DSFAPDGITFVALLSACSHGGLLETGQHYFESMR 473


>gi|147770365|emb|CAN78152.1| hypothetical protein VITISV_040250 [Vitis vinifera]
          Length = 606

 Score =  323 bits (829), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 157/460 (34%), Positives = 270/460 (58%), Gaps = 3/460 (0%)

Query: 137 HARNLFDNMAER--DVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTI 194
           +A+ +F+ + ++  +   WN+ +   A+  +  + +  +  LR++ +  + F+ + +L  
Sbjct: 78  YAQQIFECVEKQKPETFVWNSCLKALAEGDSPIDAIMLFYRLRQYDVCPDTFTCSSVLRA 137

Query: 195 CVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTW 254
           C+ L +L   R +HG V   GF SN+ + + IV  YA CGE+ +AR LF++   RDV+TW
Sbjct: 138 CLNLLDLSNGRILHGVVEKVGFRSNLYLQNMIVHLYASCGEMGEARLLFEKMPQRDVVTW 197

Query: 255 TTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIR 314
             M++   K GD E A  LF+ MPE+N  SWT++IAGY + G  ++A+ LF +M    ++
Sbjct: 198 NIMIAQLIKQGDHEGAYDLFSRMPERNVRSWTSMIAGYVQCGKAKEAIHLFAKMEEAGVK 257

Query: 315 PNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQV 374
            N+ T  + L ACA + +L  G ++H +  R  F+ N  + ++LIDMY KCGCL +  +V
Sbjct: 258 CNEVTVVAVLAACADLGALDLGMRIHEYSNRHGFKRNVRISNTLIDMYVKCGCLEEACKV 317

Query: 375 FDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGL 434
           F+  + +   + W+ MI  L  HG  E+A+RLF DM +  ++P+ +T   +L+AC+H GL
Sbjct: 318 FEEMEER-TVVSWSAMIGGLAMHGRAEEALRLFSDMSQVGIEPNGVTFIGLLHACSHMGL 376

Query: 435 VQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALH 494
           + EG  +F SMT D GIIP  EH+ C+++LL++AG   +    +  MP + +  +W AL 
Sbjct: 377 ISEGRRFFASMTRDYGIIPQIEHYGCMVDLLSRAGLLHEAHEFILNMPMKPNGVVWGALL 436

Query: 495 GVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKK 554
           G CR+H N++M  + +  L++ +P +   + +LS+IY+  G+     +VR+ + +RQ KK
Sbjct: 437 GACRVHKNVEMAEEAIKHLLELDPLNDGYYVVLSNIYAEAGRWEDTARVRKFMKDRQVKK 496

Query: 555 EQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQM 594
               S I ++  VH F   +  HP  + ++   E+L  +M
Sbjct: 497 TPGWSSITVDGVVHEFVAGEESHPDTEQIFQRWEELLEEM 536



 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 101/393 (25%), Positives = 180/393 (45%), Gaps = 34/393 (8%)

Query: 13  KNLPNNCLIQSFLSLISKGQLS-EAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLG 71
           K  P   +  S L  +++G    +AI     L Q  +     T + +L+ C     L  G
Sbjct: 88  KQKPETFVWNSCLKALAEGDSPIDAIMLFYRLRQYDVCPDTFTCSSVLRACLNLLDLSNG 147

Query: 72  KRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYAN 131
           + +H  ++    ++   +L N ++ +Y  CG   +AR +F+K+P +++ ++N M++    
Sbjct: 148 RILHGVVEKVGFRS-NLYLQNMIVHLYASCGEMGEARLLFEKMPQRDVVTWNIMIAQLIK 206

Query: 132 LGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGI 191
            G  + A +LF  M ER+V SW +MI GY + G  +E +  +  +    + CNE +   +
Sbjct: 207 QGDHEGAYDLFSRMPERNVRSWTSMIAGYVQCGKAKEAIHLFAKMEEAGVKCNEVTVVAV 266

Query: 192 LTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDV 251
           L  C  L  L L  ++H      GF  NV IS++++D Y KCG L +A ++F+E + R V
Sbjct: 267 LAACADLGALDLGMRIHEYSNRHGFKRNVRISNTLIDMYVKCGCLEEACKVFEEMEERTV 326

Query: 252 LTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMIL 311
           ++W+ M+ G A  G  E A +LF++M +                               +
Sbjct: 327 VSWSAMIGGLAMHGRAEEALRLFSDMSQ-------------------------------V 355

Query: 312 RIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIV-MSSLIDMYSKCGCLND 370
            I PN  TF   L AC+ +  +  G++    + R       I     ++D+ S+ G L++
Sbjct: 356 GIEPNGVTFIGLLHACSHMGLISEGRRFFASMTRDYGIIPQIEHYGCMVDLLSRAGLLHE 415

Query: 371 GRQVFDLTDNKENSMLWNTMISALTQHGYDEQA 403
             +       K N ++W  ++ A   H   E A
Sbjct: 416 AHEFILNMPMKPNGVVWGALLGACRVHKNVEMA 448


>gi|147812559|emb|CAN70631.1| hypothetical protein VITISV_020725 [Vitis vinifera]
          Length = 713

 Score =  323 bits (829), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 162/567 (28%), Positives = 297/567 (52%), Gaps = 64/567 (11%)

Query: 27  LISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTP 86
           L+  G   EA+     + +  +   + T A  L+ CA+S +L  G+ +H    + +    
Sbjct: 192 LVRAGYNKEALVYFSEMWRSRVEYDSYTFAIALKACADSGALNYGREIHAQ-AMKKGFDV 250

Query: 87  TTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMA 146
           ++F++N L +MY KCG                                +++   LF+ M+
Sbjct: 251 SSFVANTLATMYNKCGK-------------------------------LEYGLTLFEKMS 279

Query: 147 ERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQ 206
            RDVVSW T+I    + G  E  ++ +  +R   +S NE++FA +++ C  L  ++   Q
Sbjct: 280 MRDVVSWTTIITTLVQMGQEECAVQAFIRMRESDVSPNEYTFAAVISGCANLARIEWGEQ 339

Query: 207 VHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGD 266
           +H  +L  G  +++ + +SI+  YAKCG+L+ +  +F E   RD+++W+T+++GY + G 
Sbjct: 340 LHALILHLGLAASLSVENSIMTMYAKCGQLTSSSVIFHEMTRRDIVSWSTIIAGYXQGGH 399

Query: 267 MESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCA 326
           +  A +L + M  + P                               +P +   +S L A
Sbjct: 400 VSEAFELLSWMRMEGP-------------------------------KPTEFALASVLSA 428

Query: 327 CASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSML 386
           C ++  L+HGKQ+H +++        +V+S+LI+MY KCG + +  ++FD  +N ++ + 
Sbjct: 429 CGNMAILEHGKQLHAYVLSIGLEHTAMVLSALINMYCKCGSIEEASRIFDAAEN-DDIVS 487

Query: 387 WNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMT 446
           W  MI+   +HGY  + I LF  + R  ++PD +T   +L+AC+H+GLV  G  YF +M+
Sbjct: 488 WTAMINGYAEHGYSREVIDLFEKIPRVGLRPDSVTFIGVLSACSHAGLVDLGFHYFNAMS 547

Query: 447 HDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMG 506
               I P++EH+ C+I+LL +AG      + +E MP+  D  +W+ L   CR+HG+++ G
Sbjct: 548 KKYQISPSKEHYGCMIDLLCRAGRLSDAEHMIEAMPFHRDDVVWSTLLRACRVHGDVERG 607

Query: 507 RKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENK 566
           R+  ++++   P  + TH  L++IY++ GK R    +R+L+  +   KE   SWI++++ 
Sbjct: 608 RRTAERILQLEPNCAGTHITLANIYASKGKWREAADIRKLMKSKGVIKEPGWSWIKVKDL 667

Query: 567 VHAFSVSDSLHPMRDVLYSVLEQLAGQ 593
           V AF   D  HP  + +Y++L+ LA +
Sbjct: 668 VFAFVAGDRSHPQGEDIYNMLDLLASR 694



 Score =  154 bits (388), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 110/447 (24%), Positives = 207/447 (46%), Gaps = 61/447 (13%)

Query: 101 CG--SDVDARKVFDKIPVK-----NLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSW 153
           CG  SDV+  ++     VK     ++F  + +L  Y   G +   R +F  M  R+VVSW
Sbjct: 126 CGLNSDVNYGELLHGYAVKTGLVNSVFVGSALLDMYTKNGKIFEGRRVFHEMPMRNVVSW 185

Query: 154 NTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLV 213
             +I G  ++G  +E L ++  + R  +  + ++FA  L  C     L   R++H Q + 
Sbjct: 186 TAIITGLVRAGYNKEALVYFSEMWRSRVEYDSYTFAIALKACADSGALNYGREIHAQAMK 245

Query: 214 TGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKL 273
            GF  +  +++++   Y KCG+L     LF++   RDV++WTT+++   ++G  E A + 
Sbjct: 246 KGFDVSSFVANTLATMYNKCGKLEYGLTLFEKMSMRDVVSWTTIITTLVQMGQEECAVQA 305

Query: 274 FNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSL 333
           F  M E +                               + PN++TF++ +  CA++  +
Sbjct: 306 FIRMRESD-------------------------------VSPNEYTFAAVISGCANLARI 334

Query: 334 KHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVF-DLTDNKENSMLWNTMIS 392
           + G+Q+H  ++     ++  V +S++ MY+KCG L     +F ++T  + + + W+T+I+
Sbjct: 335 EWGEQLHALILHLGLAASLSVENSIMTMYAKCGQLTSSSVIFHEMT--RRDIVSWSTIIA 392

Query: 393 ALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGII 452
              Q G+  +A  L   M     KP +  LA +L+AC +  +++ G        H   + 
Sbjct: 393 GYXQGGHVSEAFELLSWMRMEGPKPTEFALASVLSACGNMAILEHG-----KQLHAYVLS 447

Query: 453 PNQEHHACLIELLAQAGCSDQLMNQLEKM--PYEHDSYL-WNALHGVCRIHGNIDMG--R 507
              EH A ++  L    C    + +  ++    E+D  + W A+     I+G  + G  R
Sbjct: 448 IGLEHTAMVLSALINMYCKCGSIEEASRIFDAAENDDIVSWTAM-----INGYAEHGYSR 502

Query: 508 KVVDQL-----IDQNPQSSATHGLLSS 529
           +V+D       +   P S    G+LS+
Sbjct: 503 EVIDLFEKIPRVGLRPDSVTFIGVLSA 529


>gi|356540844|ref|XP_003538894.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Glycine max]
          Length = 748

 Score =  323 bits (829), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 176/558 (31%), Positives = 306/558 (54%), Gaps = 33/558 (5%)

Query: 73  RVHLHLKLTQRKTPTTFLS-NHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYAN 131
           ++HL L+  +  T    +S N +++ Y K G    A ++F+KIP  N  S+  ML G A 
Sbjct: 188 KMHLALQFFESMTERNVVSWNLMVAGYVKSGDLSSAWQLFEKIPNPNAVSWVTMLCGLAK 247

Query: 132 LGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGI 191
            G M  AR LFD M  ++VVSWN MI  Y +   V+E +K +K +       +  S+  I
Sbjct: 248 YGKMAEARELFDRMPSKNVVSWNAMIATYVQDLQVDEAVKLFKKMPH----KDSVSWTTI 303

Query: 192 LTICVKLEELKLTRQVHGQV----------LVTGFLSN-----------------VVISS 224
           +   +++ +L   RQV+ Q+          L++G + N                 VV  +
Sbjct: 304 INGYIRVGKLDEARQVYNQMPCKDITAQTALMSGLIQNGRIDEADQMFSRIGAHDVVCWN 363

Query: 225 SIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVS 284
           S++  Y++ G + +A  LF +   ++ ++W TM+SGYA+ G M+ A+++F  M EKN VS
Sbjct: 364 SMIAGYSRSGRMDEALNLFRQMPIKNSVSWNTMISGYAQAGQMDRATEIFQAMREKNIVS 423

Query: 285 WTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLI 344
           W +LIAG+ +N L   AL+    M     +P+Q TF+  L ACA++ +L+ G Q+H +++
Sbjct: 424 WNSLIAGFLQNNLYLDALKSLVMMGKEGKKPDQSTFACTLSACANLAALQVGNQLHEYIL 483

Query: 345 RTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAI 404
           ++ + ++  V ++LI MY+KCG +    QVF   +  +  + WN++IS    +GY  +A 
Sbjct: 484 KSGYMNDLFVGNALIAMYAKCGRVQSAEQVFRDIECVD-LISWNSLISGYALNGYANKAF 542

Query: 405 RLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIEL 464
           + F  M    V PD++T   +L+AC+H+GL  +GL  F+ M  D  I P  EH++CL++L
Sbjct: 543 KAFEQMSSERVVPDEVTFIGMLSACSHAGLANQGLDIFKCMIEDFAIEPLAEHYSCLVDL 602

Query: 465 LAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATH 524
           L + G  ++  N +  M  + ++ LW +L G CR+H N+++GR   ++L +  P +++ +
Sbjct: 603 LGRVGRLEEAFNTVRGMKVKANAGLWGSLLGACRVHKNLELGRFAAERLFELEPHNASNY 662

Query: 525 GLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLY 584
             LS++++  G+   VE+VR L+  ++  K+   SWIE++N++  F   D        + 
Sbjct: 663 ITLSNMHAEAGRWEEVERVRMLMRGKRAGKQPGCSWIEVQNQIQHFLSHDPAKLRPKNIQ 722

Query: 585 SVLEQLAGQMGEDAPSLD 602
            +L  LA  M +   + D
Sbjct: 723 IILNTLAAHMRDKCNTSD 740



 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 124/473 (26%), Positives = 218/473 (46%), Gaps = 65/473 (13%)

Query: 88  TFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAE 147
            F  N  I    K G   +A ++F  +  KNL +YN+M+S  A    ++ AR LFD M+ 
Sbjct: 17  AFNHNRQIIQLGKLGKVEEAIRIFFNMTHKNLVTYNSMISVLAKNARIRDARQLFDQMSL 76

Query: 148 RDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQV 207
           R++VSWNTMI GY  +  VEE  + + V+       + FS+A ++T   +  +L+  R++
Sbjct: 77  RNLVSWNTMIAGYLHNNMVEEASELFDVMPER----DNFSWALMITCYTRKGKLEKAREL 132

Query: 208 HGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDM 267
               LV   L +    ++++  YAK G+ +DA+++F++  A+D++++ +M++GY + G M
Sbjct: 133 --LELVPDKL-DTACWNAMIAGYAKKGQFNDAKKVFEQMPAKDLVSYNSMLAGYTQNGKM 189

Query: 268 ESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCAC 327
             A + F  M E+N VSW  ++AGY ++G    A +LF ++      PN  ++ + LC  
Sbjct: 190 HLALQFFESMTERNVVSWNLMVAGYVKSGDLSSAWQLFEKI----PNPNAVSWVTMLCGL 245

Query: 328 ASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLW 387
           A     K+GK                              + + R++FD   +K N + W
Sbjct: 246 A-----KYGK------------------------------MAEARELFDRMPSK-NVVSW 269

Query: 388 NTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTH 447
           N MI+   Q    ++A++LF  M       D ++   I+N     G + E    +  M  
Sbjct: 270 NAMIATYVQDLQVDEAVKLFKKMPHK----DSVSWTTIINGYIRVGKLDEARQVYNQMP- 324

Query: 448 DLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGR 507
                 +      L+  L Q G  D+  +Q+      HD   WN++       G +D   
Sbjct: 325 ----CKDITAQTALMSGLIQNGRIDE-ADQMFSRIGAHDVVCWNSMIAGYSRSGRMDEAL 379

Query: 508 KVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISW 560
            +  Q+  +N  S  T   + S Y+  G+     ++ Q + E+       +SW
Sbjct: 380 NLFRQMPIKNSVSWNT---MISGYAQAGQMDRATEIFQAMREKNI-----VSW 424


>gi|225435852|ref|XP_002265253.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Vitis vinifera]
          Length = 972

 Score =  323 bits (829), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 172/560 (30%), Positives = 291/560 (51%), Gaps = 36/560 (6%)

Query: 35  EAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHL 94
           EA+S    +   G++  + T+A  +  C     L+ G+ +H +    +       + N L
Sbjct: 345 EALSVFRKMVLEGVKPNSITIASAVSACTNLSLLRHGREIHGYCIKVEELDSDLLVGNSL 404

Query: 95  ISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMA----ERDV 150
           +  Y KC S   AR+ F  I   +L S+N ML+GYA  G  + A  L   M     E D+
Sbjct: 405 VDYYAKCRSVEVARRKFGMIKQTDLVSWNAMLAGYALRGSHEEAIELLSEMKFQGIEPDI 464

Query: 151 VSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQ 210
           ++WN ++ G+ + G  +  L+F++ +    +  N  + +G L  C ++  LKL +++HG 
Sbjct: 465 ITWNGLVTGFTQYGDGKAALEFFQRMHSMGMDPNTTTISGALAACGQVRNLKLGKEIHGY 524

Query: 211 VLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESA 270
           VL      +  + S+++  Y+ C  L  A  +F E   RDV+ W +++S  A+       
Sbjct: 525 VLRNHIELSTGVGSALISMYSGCDSLEVACSVFSELSTRDVVVWNSIISACAQ------- 577

Query: 271 SKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASI 330
                                   +G    AL+L   M +  +  N  T  S L AC+ +
Sbjct: 578 ------------------------SGRSVNALDLLREMNLSNVEVNTVTMVSALPACSKL 613

Query: 331 VSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTM 390
            +L+ GK++H F+IR    +   +++SLIDMY +CG +   R++FDL   ++  + WN M
Sbjct: 614 AALRQGKEIHQFIIRCGLDTCNFILNSLIDMYGRCGSIQKSRRIFDLMPQRD-LVSWNVM 672

Query: 391 ISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLG 450
           IS    HG+   A+ LF       +KP+ IT   +L+AC+HSGL++EG  YF+ M  +  
Sbjct: 673 ISVYGMHGFGMDAVNLFQQFRTMGLKPNHITFTNLLSACSHSGLIEEGWKYFKMMKTEYA 732

Query: 451 IIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVV 510
           + P  E +AC+++LL++AG  ++ +  +EKMP+E ++ +W +L G CRIH N D+     
Sbjct: 733 MDPAVEQYACMVDLLSRAGQFNETLEFIEKMPFEPNAAVWGSLLGACRIHCNPDLAEYAA 792

Query: 511 DQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAF 570
             L +  PQSS  + L+++IYSA G+     K+R L+ ER   K    SWIE++ K+H+F
Sbjct: 793 RYLFELEPQSSGNYVLMANIYSAAGRWEDAAKIRCLMKERGVTKPPGCSWIEVKRKLHSF 852

Query: 571 SVSDSLHPMRDVLYSVLEQL 590
            V D+ HP+ + + + +E L
Sbjct: 853 VVGDTSHPLMEQISAKMESL 872



 Score =  223 bits (567), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 148/516 (28%), Positives = 250/516 (48%), Gaps = 49/516 (9%)

Query: 31  GQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFL 90
           G   E I    L+   G+R        + + C+E K+ ++GK V+ ++ L+      + +
Sbjct: 169 GDYEETIKLFYLMVNEGVRPDHFVFPKVFKACSELKNYRVGKDVYDYM-LSIGFEGNSCV 227

Query: 91  SNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNM----A 146
              ++ M+ KCG    AR+ F++I  K++F +N M+SGY + G  K A     +M     
Sbjct: 228 KGSILDMFIKCGRMDIARRFFEEIEFKDVFMWNIMVSGYTSKGEFKKALKCISDMKLSGV 287

Query: 147 ERDVVSWNTMIIGYAKSGAVEEGLKFY--------------------------------- 173
           + D V+WN +I GYA+SG  EE  K++                                 
Sbjct: 288 KPDQVTWNAIISGYAQSGQFEEASKYFLEMGGLKDFKPNVVSWTALIAGSEQNGYDFEAL 347

Query: 174 KVLRRF---SISCNEFSFAGILTICVKLEELKLTRQVHGQVL-VTGFLSNVVISSSIVDA 229
            V R+     +  N  + A  ++ C  L  L+  R++HG  + V    S++++ +S+VD 
Sbjct: 348 SVFRKMVLEGVKPNSITIASAVSACTNLSLLRHGREIHGYCIKVEELDSDLLVGNSLVDY 407

Query: 230 YAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMP----EKNPVSW 285
           YAKC  +  ARR F      D+++W  M++GYA  G  E A +L +EM     E + ++W
Sbjct: 408 YAKCRSVEVARRKFGMIKQTDLVSWNAMLAGYALRGSHEEAIELLSEMKFQGIEPDIITW 467

Query: 286 TTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIR 345
             L+ G+T+ G G+ ALE F RM  + + PN  T S  L AC  + +LK GK++HG+++R
Sbjct: 468 NGLVTGFTQYGDGKAALEFFQRMHSMGMDPNTTTISGALAACGQVRNLKLGKEIHGYVLR 527

Query: 346 TNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIR 405
            +   +T V S+LI MYS C  L     VF     ++  ++WN++ISA  Q G    A+ 
Sbjct: 528 NHIELSTGVGSALISMYSGCDSLEVACSVFSELSTRD-VVVWNSIISACAQSGRSVNALD 586

Query: 406 LFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELL 465
           L  +M  S+V+ + +T+   L AC+    +++G    + +    G+         LI++ 
Sbjct: 587 LLREMNLSNVEVNTVTMVSALPACSKLAALRQGKEIHQFIIR-CGLDTCNFILNSLIDMY 645

Query: 466 AQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHG 501
            + G   +     + MP + D   WN +  V  +HG
Sbjct: 646 GRCGSIQKSRRIFDLMP-QRDLVSWNVMISVYGMHG 680



 Score =  204 bits (520), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 129/443 (29%), Positives = 212/443 (47%), Gaps = 75/443 (16%)

Query: 53  ETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFD 112
           E  A ILQ+C +  +L+LG +VH  L +                     G DV       
Sbjct: 90  EIYASILQKCRKLYNLRLGFQVHAQLVVN--------------------GVDVCE----- 124

Query: 113 KIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKF 172
                  F  + +L  Y   G ++ AR +FD M+ER+V SW  ++  Y   G  EE +K 
Sbjct: 125 -------FLGSRLLEVYCQTGCVEDARRMFDKMSERNVFSWTAIMEMYCGLGDYEETIKL 177

Query: 173 YKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAK 232
           + ++    +  + F F  +   C +L+  ++ + V+  +L  GF  N  +  SI+D + K
Sbjct: 178 FYLMVNEGVRPDHFVFPKVFKACSELKNYRVGKDVYDYMLSIGFEGNSCVKGSILDMFIK 237

Query: 233 CGELSDARRLFDETDARDV-----------------------------------LTWTTM 257
           CG +  ARR F+E + +DV                                   +TW  +
Sbjct: 238 CGRMDIARRFFEEIEFKDVFMWNIMVSGYTSKGEFKKALKCISDMKLSGVKPDQVTWNAI 297

Query: 258 VSGYAKLGDMESASKLFNEMP-----EKNPVSWTTLIAGYTRNGLGQKALELFTRMMILR 312
           +SGYA+ G  E ASK F EM      + N VSWT LIAG  +NG   +AL +F +M++  
Sbjct: 298 ISGYAQSGQFEEASKYFLEMGGLKDFKPNVVSWTALIAGSEQNGYDFEALSVFRKMVLEG 357

Query: 313 IRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRT-NFRSNTIVMSSLIDMYSKCGCLNDG 371
           ++PN  T +S + AC ++  L+HG+++HG+ I+     S+ +V +SL+D Y+KC  +   
Sbjct: 358 VKPNSITIASAVSACTNLSLLRHGREIHGYCIKVEELDSDLLVGNSLVDYYAKCRSVEVA 417

Query: 372 RQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTH 431
           R+ F +   + + + WN M++     G  E+AI L  +M    ++PD IT   ++   T 
Sbjct: 418 RRKFGMI-KQTDLVSWNAMLAGYALRGSHEEAIELLSEMKFQGIEPDIITWNGLVTGFTQ 476

Query: 432 SGLVQEGLTYFESMTHDLGIIPN 454
            G  +  L +F+ M H +G+ PN
Sbjct: 477 YGDGKAALEFFQRM-HSMGMDPN 498



 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 84/297 (28%), Positives = 139/297 (46%), Gaps = 32/297 (10%)

Query: 188 FAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETD 247
           +A IL  C KL  L+L  QVH Q++V G      + S +++ Y + G + DARR      
Sbjct: 92  YASILQKCRKLYNLRLGFQVHAQLVVNGVDVCEFLGSRLLEVYCQTGCVEDARR------ 145

Query: 248 ARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTR 307
                                    +F++M E+N  SWT ++  Y   G  ++ ++LF  
Sbjct: 146 -------------------------MFDKMSERNVFSWTAIMEMYCGLGDYEETIKLFYL 180

Query: 308 MMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGC 367
           M+   +RP+   F     AC+ + + + GK V+ +++   F  N+ V  S++DM+ KCG 
Sbjct: 181 MVNEGVRPDHFVFPKVFKACSELKNYRVGKDVYDYMLSIGFEGNSCVKGSILDMFIKCGR 240

Query: 368 LNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILN 427
           ++  R+ F+  + K+   +WN M+S  T  G  ++A++   DM  S VKPD++T   I++
Sbjct: 241 MDIARRFFEEIEFKD-VFMWNIMVSGYTSKGEFKKALKCISDMKLSGVKPDQVTWNAIIS 299

Query: 428 ACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYE 484
               SG  +E   YF  M       PN      LI    Q G   + ++   KM  E
Sbjct: 300 GYAQSGQFEEASKYFLEMGGLKDFKPNVVSWTALIAGSEQNGYDFEALSVFRKMVLE 356



 Score = 73.2 bits (178), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 48/200 (24%), Positives = 90/200 (45%), Gaps = 3/200 (1%)

Query: 294 RNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTI 353
           RNG+   A  L + M +         ++S L  C  + +L+ G QVH  L+         
Sbjct: 66  RNGVLNNAAMLLSSMDLTNPDECIEIYASILQKCRKLYNLRLGFQVHAQLVVNGVDVCEF 125

Query: 354 VMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRS 413
           + S L+++Y + GC+ D R++FD    + N   W  ++      G  E+ I+LF+ MV  
Sbjct: 126 LGSRLLEVYCQTGCVEDARRMFDKMSER-NVFSWTAIMEMYCGLGDYEETIKLFYLMVNE 184

Query: 414 SVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQ 473
            V+PD      +  AC+     + G   ++ M   +G   N      ++++  + G  D 
Sbjct: 185 GVRPDHFVFPKVFKACSELKNYRVGKDVYDYML-SIGFEGNSCVKGSILDMFIKCGRMDI 243

Query: 474 LMNQLEKMPYEHDSYLWNAL 493
                E++ ++ D ++WN +
Sbjct: 244 ARRFFEEIEFK-DVFMWNIM 262


>gi|414585731|tpg|DAA36302.1| TPA: hypothetical protein ZEAMMB73_369042 [Zea mays]
          Length = 865

 Score =  323 bits (828), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 166/571 (29%), Positives = 310/571 (54%), Gaps = 38/571 (6%)

Query: 26  SLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKT 85
           +L   G++ EA+  +  +  +G+RL + T    L  CA   SL+ GK++H          
Sbjct: 244 ALSQSGRVREALDMVVDMQSKGVRLDSTTYTSSLTACARLSSLRWGKQLH---------- 293

Query: 86  PTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNM 145
                                  +V   +P  + +  + ++  YA  G  K A+ +F+++
Sbjct: 294 ----------------------AQVIRNLPHIDPYVASALVELYAKSGCFKEAKGVFNSL 331

Query: 146 AERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTR 205
            +R+ V+W  +I G+ + G   E ++ +  +R   ++ ++F+ A +++ C    +L L R
Sbjct: 332 HDRNNVAWTVLISGFLQYGCFTESVELFNQMRAELMTLDQFALATLISGCCSRMDLCLGR 391

Query: 206 QVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLG 265
           Q+H   L +G +  VV+S+S++  YAKC  L  A  +F   + +D+++WT+M++ Y+++G
Sbjct: 392 QLHSLCLKSGQIQAVVVSNSLISMYAKCDNLQSAEAIFRFMNEKDIVSWTSMITAYSQVG 451

Query: 266 DMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILR-IRPNQHTFSSCL 324
           ++  A + F+ M EKN ++W  ++  Y ++G  +  L ++  M+    +RP+  T+ +  
Sbjct: 452 NVAKAREFFDGMSEKNVITWNAMLGAYIQHGAEEDGLRMYKVMLSEEYVRPDWVTYVTLF 511

Query: 325 CACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENS 384
             CA + + K G Q+ G  ++     +T V +++I MYSKCG + + R+VFD   N ++ 
Sbjct: 512 KGCADLGANKLGDQIIGRTVKVGLIIDTSVANAVITMYSKCGRILEARKVFDFL-NVKDI 570

Query: 385 MLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFES 444
           + WN MI+  +QHG  +QAI +F D+++   KPD I+   +L+ C+HSGLVQEG  YF+ 
Sbjct: 571 VSWNAMITGYSQHGMGKQAIEIFDDILKRGAKPDYISYVAVLSGCSHSGLVQEGKFYFDM 630

Query: 445 MTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNID 504
           M     I P  EH +C+++LL +AG   +  + ++ MP +  + +W AL   C+IHGN +
Sbjct: 631 MKRAHNISPGLEHFSCMVDLLGRAGHLTEAKDLIDDMPMKPTAEVWGALLSACKIHGNNE 690

Query: 505 MGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIE 564
           +       + + +   S ++ L++ IY+  GK     ++R+L+ ++  KK    SW+E++
Sbjct: 691 LAELAAKHVFELDSPDSGSYMLMAKIYADAGKSDDSAQIRKLMRDKGIKKNPGYSWMEVD 750

Query: 565 NKVHAFSVSDSLHP----MRDVLYSVLEQLA 591
           NKVH F   D  HP    +R  L  ++E++A
Sbjct: 751 NKVHVFKADDVSHPQVLAIRKKLDELMEKIA 781



 Score =  186 bits (471), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 107/345 (31%), Positives = 186/345 (53%), Gaps = 3/345 (0%)

Query: 87  TTFLSNHLISMYFKCGSDVDARKVF-DKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNM 145
             FL N L+  Y  CG+  DAR++    I   N+ ++N ML+GYA LG +  A  LF  M
Sbjct: 38  AVFLQNTLLHAYLSCGALSDARRLLLMDIAHPNVITHNVMLNGYAKLGRLSDAVELFGRM 97

Query: 146 AERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISC-NEFSFAGILTICVKLEELKLT 204
             RDV SWNT++ GY +S      L+ +  + R   S  N F+ A  +  C  L    L 
Sbjct: 98  PARDVASWNTLMSGYFQSRQYLVSLETFLSMHRSGDSWPNAFTLACAMKSCGALGWHSLA 157

Query: 205 RQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKL 264
            Q+   V       +  +++++VD + +CG +  A RLF       +    +M++GY K 
Sbjct: 158 LQLLAMVQKFDSQDDSEVAAALVDMFVRCGAVDLASRLFVRIKEPTMFCRNSMLAGYVKT 217

Query: 265 GDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCL 324
             ++ A +LF+ MPE++ VSW  +++  +++G  ++AL++   M    +R +  T++S L
Sbjct: 218 YGVDHALELFDSMPERDVVSWNMMVSALSQSGRVREALDMVVDMQSKGVRLDSTTYTSSL 277

Query: 325 CACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENS 384
            ACA + SL+ GKQ+H  +IR     +  V S+L+++Y+K GC  + + VF+   ++ N+
Sbjct: 278 TACARLSSLRWGKQLHAQVIRNLPHIDPYVASALVELYAKSGCFKEAKGVFNSLHDR-NN 336

Query: 385 MLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNAC 429
           + W  +IS   Q+G   +++ LF+ M    +  D+  LA +++ C
Sbjct: 337 VAWTVLISGFLQYGCFTESVELFNQMRAELMTLDQFALATLISGC 381



 Score =  166 bits (421), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 99/395 (25%), Positives = 194/395 (49%), Gaps = 37/395 (9%)

Query: 11  NRKNLPNNCLIQSFLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKL 70
           +R N+    LI  FL     G  +E++   + +    + L    LA ++  C     L L
Sbjct: 333 DRNNVAWTVLISGFLQY---GCFTESVELFNQMRAELMTLDQFALATLISGCCSRMDLCL 389

Query: 71  GKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYA 130
           G+++H  L L   +     +SN LISMY KC +   A  +F  +  K++ S+ +M++ Y+
Sbjct: 390 GRQLH-SLCLKSGQIQAVVVSNSLISMYAKCDNLQSAEAIFRFMNEKDIVSWTSMITAYS 448

Query: 131 NLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKV-LRRFSISCNEFSFA 189
            +G +  AR  FD M+E++V++WN M+  Y + GA E+GL+ YKV L    +  +  ++ 
Sbjct: 449 QVGNVAKAREFFDGMSEKNVITWNAMLGAYIQHGAEEDGLRMYKVMLSEEYVRPDWVTYV 508

Query: 190 GILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDAR 249
            +   C  L   KL  Q+ G+ +  G + +  ++++++  Y+KCG + +AR++FD  + +
Sbjct: 509 TLFKGCADLGANKLGDQIIGRTVKVGLIIDTSVANAVITMYSKCGRILEARKVFDFLNVK 568

Query: 250 DVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMM 309
           D+++W  M++G                               Y+++G+G++A+E+F  ++
Sbjct: 569 DIVSWNAMITG-------------------------------YSQHGMGKQAIEIFDDIL 597

Query: 310 ILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRT-NFRSNTIVMSSLIDMYSKCGCL 368
               +P+  ++ + L  C+    ++ GK     + R  N        S ++D+  + G L
Sbjct: 598 KRGAKPDYISYVAVLSGCSHSGLVQEGKFYFDMMKRAHNISPGLEHFSCMVDLLGRAGHL 657

Query: 369 NDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQA 403
            + + + D    K  + +W  ++SA   HG +E A
Sbjct: 658 TEAKDLIDDMPMKPTAEVWGALLSACKIHGNNELA 692



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 91/316 (28%), Positives = 149/316 (47%), Gaps = 33/316 (10%)

Query: 187 SFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDET 246
           +FA  L  C     L   R +HG+++  G  S V + ++++ AY  CG LSDARRL    
Sbjct: 6   AFADALRSCGARGALAGARALHGRLVAVGLASAVFLQNTLLHAYLSCGALSDARRLLLMD 65

Query: 247 DAR-DVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELF 305
            A  +V+T   M++GYAKLG +  A +LF  MP ++  SW TL++GY ++     +LE F
Sbjct: 66  IAHPNVITHNVMLNGYAKLGRLSDAVELFGRMPARDVASWNTLMSGYFQSRQYLVSLETF 125

Query: 306 TRM-MILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSK 364
             M       PN  T +  + +C ++       Q+   + + + + ++ V ++L+DM+ +
Sbjct: 126 LSMHRSGDSWPNAFTLACAMKSCGALGWHSLALQLLAMVQKFDSQDDSEVAAALVDMFVR 185

Query: 365 CGCLNDGRQVF----DLTDNKENSML--------------------------WNTMISAL 394
           CG ++   ++F    + T    NSML                          WN M+SAL
Sbjct: 186 CGAVDLASRLFVRIKEPTMFCRNSMLAGYVKTYGVDHALELFDSMPERDVVSWNMMVSAL 245

Query: 395 TQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPN 454
           +Q G   +A+ +  DM    V+ D  T    L AC     ++ G      +  +L  I  
Sbjct: 246 SQSGRVREALDMVVDMQSKGVRLDSTTYTSSLTACARLSSLRWGKQLHAQVIRNLPHIDP 305

Query: 455 QEHHACLIELLAQAGC 470
               A L+EL A++GC
Sbjct: 306 YVASA-LVELYAKSGC 320


>gi|259490042|ref|NP_001159140.1| hypothetical protein [Zea mays]
 gi|223942207|gb|ACN25187.1| unknown [Zea mays]
 gi|414585730|tpg|DAA36301.1| TPA: hypothetical protein ZEAMMB73_369042 [Zea mays]
          Length = 885

 Score =  323 bits (828), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 166/571 (29%), Positives = 310/571 (54%), Gaps = 38/571 (6%)

Query: 26  SLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKT 85
           +L   G++ EA+  +  +  +G+RL + T    L  CA   SL+ GK++H          
Sbjct: 264 ALSQSGRVREALDMVVDMQSKGVRLDSTTYTSSLTACARLSSLRWGKQLH---------- 313

Query: 86  PTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNM 145
                                  +V   +P  + +  + ++  YA  G  K A+ +F+++
Sbjct: 314 ----------------------AQVIRNLPHIDPYVASALVELYAKSGCFKEAKGVFNSL 351

Query: 146 AERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTR 205
            +R+ V+W  +I G+ + G   E ++ +  +R   ++ ++F+ A +++ C    +L L R
Sbjct: 352 HDRNNVAWTVLISGFLQYGCFTESVELFNQMRAELMTLDQFALATLISGCCSRMDLCLGR 411

Query: 206 QVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLG 265
           Q+H   L +G +  VV+S+S++  YAKC  L  A  +F   + +D+++WT+M++ Y+++G
Sbjct: 412 QLHSLCLKSGQIQAVVVSNSLISMYAKCDNLQSAEAIFRFMNEKDIVSWTSMITAYSQVG 471

Query: 266 DMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILR-IRPNQHTFSSCL 324
           ++  A + F+ M EKN ++W  ++  Y ++G  +  L ++  M+    +RP+  T+ +  
Sbjct: 472 NVAKAREFFDGMSEKNVITWNAMLGAYIQHGAEEDGLRMYKVMLSEEYVRPDWVTYVTLF 531

Query: 325 CACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENS 384
             CA + + K G Q+ G  ++     +T V +++I MYSKCG + + R+VFD   N ++ 
Sbjct: 532 KGCADLGANKLGDQIIGRTVKVGLIIDTSVANAVITMYSKCGRILEARKVFDFL-NVKDI 590

Query: 385 MLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFES 444
           + WN MI+  +QHG  +QAI +F D+++   KPD I+   +L+ C+HSGLVQEG  YF+ 
Sbjct: 591 VSWNAMITGYSQHGMGKQAIEIFDDILKRGAKPDYISYVAVLSGCSHSGLVQEGKFYFDM 650

Query: 445 MTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNID 504
           M     I P  EH +C+++LL +AG   +  + ++ MP +  + +W AL   C+IHGN +
Sbjct: 651 MKRAHNISPGLEHFSCMVDLLGRAGHLTEAKDLIDDMPMKPTAEVWGALLSACKIHGNNE 710

Query: 505 MGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIE 564
           +       + + +   S ++ L++ IY+  GK     ++R+L+ ++  KK    SW+E++
Sbjct: 711 LAELAAKHVFELDSPDSGSYMLMAKIYADAGKSDDSAQIRKLMRDKGIKKNPGYSWMEVD 770

Query: 565 NKVHAFSVSDSLHP----MRDVLYSVLEQLA 591
           NKVH F   D  HP    +R  L  ++E++A
Sbjct: 771 NKVHVFKADDVSHPQVLAIRKKLDELMEKIA 801



 Score =  185 bits (470), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 107/345 (31%), Positives = 186/345 (53%), Gaps = 3/345 (0%)

Query: 87  TTFLSNHLISMYFKCGSDVDARKVF-DKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNM 145
             FL N L+  Y  CG+  DAR++    I   N+ ++N ML+GYA LG +  A  LF  M
Sbjct: 58  AVFLQNTLLHAYLSCGALSDARRLLLMDIAHPNVITHNVMLNGYAKLGRLSDAVELFGRM 117

Query: 146 AERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISC-NEFSFAGILTICVKLEELKLT 204
             RDV SWNT++ GY +S      L+ +  + R   S  N F+ A  +  C  L    L 
Sbjct: 118 PARDVASWNTLMSGYFQSRQYLVSLETFLSMHRSGDSWPNAFTLACAMKSCGALGWHSLA 177

Query: 205 RQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKL 264
            Q+   V       +  +++++VD + +CG +  A RLF       +    +M++GY K 
Sbjct: 178 LQLLAMVQKFDSQDDSEVAAALVDMFVRCGAVDLASRLFVRIKEPTMFCRNSMLAGYVKT 237

Query: 265 GDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCL 324
             ++ A +LF+ MPE++ VSW  +++  +++G  ++AL++   M    +R +  T++S L
Sbjct: 238 YGVDHALELFDSMPERDVVSWNMMVSALSQSGRVREALDMVVDMQSKGVRLDSTTYTSSL 297

Query: 325 CACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENS 384
            ACA + SL+ GKQ+H  +IR     +  V S+L+++Y+K GC  + + VF+   ++ N+
Sbjct: 298 TACARLSSLRWGKQLHAQVIRNLPHIDPYVASALVELYAKSGCFKEAKGVFNSLHDR-NN 356

Query: 385 MLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNAC 429
           + W  +IS   Q+G   +++ LF+ M    +  D+  LA +++ C
Sbjct: 357 VAWTVLISGFLQYGCFTESVELFNQMRAELMTLDQFALATLISGC 401



 Score =  166 bits (421), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 99/395 (25%), Positives = 194/395 (49%), Gaps = 37/395 (9%)

Query: 11  NRKNLPNNCLIQSFLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKL 70
           +R N+    LI  FL     G  +E++   + +    + L    LA ++  C     L L
Sbjct: 353 DRNNVAWTVLISGFLQY---GCFTESVELFNQMRAELMTLDQFALATLISGCCSRMDLCL 409

Query: 71  GKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYA 130
           G+++H  L L   +     +SN LISMY KC +   A  +F  +  K++ S+ +M++ Y+
Sbjct: 410 GRQLH-SLCLKSGQIQAVVVSNSLISMYAKCDNLQSAEAIFRFMNEKDIVSWTSMITAYS 468

Query: 131 NLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKV-LRRFSISCNEFSFA 189
            +G +  AR  FD M+E++V++WN M+  Y + GA E+GL+ YKV L    +  +  ++ 
Sbjct: 469 QVGNVAKAREFFDGMSEKNVITWNAMLGAYIQHGAEEDGLRMYKVMLSEEYVRPDWVTYV 528

Query: 190 GILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDAR 249
            +   C  L   KL  Q+ G+ +  G + +  ++++++  Y+KCG + +AR++FD  + +
Sbjct: 529 TLFKGCADLGANKLGDQIIGRTVKVGLIIDTSVANAVITMYSKCGRILEARKVFDFLNVK 588

Query: 250 DVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMM 309
           D+++W  M++G                               Y+++G+G++A+E+F  ++
Sbjct: 589 DIVSWNAMITG-------------------------------YSQHGMGKQAIEIFDDIL 617

Query: 310 ILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRT-NFRSNTIVMSSLIDMYSKCGCL 368
               +P+  ++ + L  C+    ++ GK     + R  N        S ++D+  + G L
Sbjct: 618 KRGAKPDYISYVAVLSGCSHSGLVQEGKFYFDMMKRAHNISPGLEHFSCMVDLLGRAGHL 677

Query: 369 NDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQA 403
            + + + D    K  + +W  ++SA   HG +E A
Sbjct: 678 TEAKDLIDDMPMKPTAEVWGALLSACKIHGNNELA 712



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 91/316 (28%), Positives = 149/316 (47%), Gaps = 33/316 (10%)

Query: 187 SFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDET 246
           +FA  L  C     L   R +HG+++  G  S V + ++++ AY  CG LSDARRL    
Sbjct: 26  AFADALRSCGARGALAGARALHGRLVAVGLASAVFLQNTLLHAYLSCGALSDARRLLLMD 85

Query: 247 DAR-DVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELF 305
            A  +V+T   M++GYAKLG +  A +LF  MP ++  SW TL++GY ++     +LE F
Sbjct: 86  IAHPNVITHNVMLNGYAKLGRLSDAVELFGRMPARDVASWNTLMSGYFQSRQYLVSLETF 145

Query: 306 TRM-MILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSK 364
             M       PN  T +  + +C ++       Q+   + + + + ++ V ++L+DM+ +
Sbjct: 146 LSMHRSGDSWPNAFTLACAMKSCGALGWHSLALQLLAMVQKFDSQDDSEVAAALVDMFVR 205

Query: 365 CGCLNDGRQVF----DLTDNKENSML--------------------------WNTMISAL 394
           CG ++   ++F    + T    NSML                          WN M+SAL
Sbjct: 206 CGAVDLASRLFVRIKEPTMFCRNSMLAGYVKTYGVDHALELFDSMPERDVVSWNMMVSAL 265

Query: 395 TQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPN 454
           +Q G   +A+ +  DM    V+ D  T    L AC     ++ G      +  +L  I  
Sbjct: 266 SQSGRVREALDMVVDMQSKGVRLDSTTYTSSLTACARLSSLRWGKQLHAQVIRNLPHIDP 325

Query: 455 QEHHACLIELLAQAGC 470
               A L+EL A++GC
Sbjct: 326 YVASA-LVELYAKSGC 340


>gi|449457225|ref|XP_004146349.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31430-like [Cucumis sativus]
          Length = 781

 Score =  323 bits (828), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 170/480 (35%), Positives = 279/480 (58%), Gaps = 8/480 (1%)

Query: 120 FSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLK-FYKVLRR 178
           + YN+++  Y  L  +++A+ LFD M  RD VSWN MI GY +    E+ +  F ++ + 
Sbjct: 279 YVYNSLIDMYYELSNVENAKKLFDEMTTRDSVSWNVMISGYVRCRRFEDAINTFREMQQE 338

Query: 179 FSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVT-GFLSNVVISSSIVDAYAKCGELS 237
            +   +E +    L+ C  L+ L+L  ++H  V    GF +   I ++++D YAKCG L+
Sbjct: 339 GNEKPDEATVVSTLSACTALKNLELGDEIHNYVRKELGFTTR--IDNALLDMYAKCGCLN 396

Query: 238 DARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGL 297
            AR +FDE   ++V+ WT+M+SGY   GD+  A  LF++ P ++ V WT +I GY +   
Sbjct: 397 IARNIFDEMSMKNVICWTSMISGYINCGDLREARDLFDKSPVRDVVLWTAMINGYVQFHH 456

Query: 298 GQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSS 357
              A+ LF  M I R++P++ T  + L  CA + +L+ GK +HG+L       + +V ++
Sbjct: 457 FDDAVALFREMQIQRVKPDKFTVVTLLTGCAQLGALEQGKWIHGYLDENRITMDVVVGTA 516

Query: 358 LIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKP 417
           LI+MYSKCGC++   ++F   ++K+ +  W ++I  L  +G   +A+RLF +M R   KP
Sbjct: 517 LIEMYSKCGCVDKSLEIFYELEDKDTAS-WTSIICGLAMNGKTSEALRLFSEMERVGAKP 575

Query: 418 DKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQ 477
           D IT   +L+AC+H GLV+EG  +F SM     I P  EH+ C+I+LL +AG  D+    
Sbjct: 576 DDITFIGVLSACSHGGLVEEGRRFFNSMKKVHRIEPKVEHYGCVIDLLGRAGLLDEAEEL 635

Query: 478 LEKMPYEHDSY---LWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSAL 534
           ++++P E+      L+ AL   CRIH N+DMG ++  +L +     S+ H LL++IY+++
Sbjct: 636 IQEIPIENCEIVVPLYGALLSACRIHNNVDMGERLAKKLENIESCDSSIHTLLANIYASV 695

Query: 535 GKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQM 594
            +    +KVR+ + E   KK    S IE++  VH F V D  HP    + S+L ++ GQ+
Sbjct: 696 DRWEDAKKVRRKMKELGVKKMPGCSLIEVDGIVHEFLVGDPSHPEMMEICSMLNRVTGQL 755



 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 83/290 (28%), Positives = 158/290 (54%), Gaps = 8/290 (2%)

Query: 32  QLSEAISSLDLLAQRGIRLPAE-TLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFL 90
           +  +AI++   + Q G   P E T+   L  C   K+L+LG  +H +++  +    TT +
Sbjct: 324 RFEDAINTFREMQQEGNEKPDEATVVSTLSACTALKNLELGDEIHNYVR--KELGFTTRI 381

Query: 91  SNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDV 150
            N L+ MY KCG    AR +FD++ +KN+  + +M+SGY N G ++ AR+LFD    RDV
Sbjct: 382 DNALLDMYAKCGCLNIARNIFDEMSMKNVICWTSMISGYINCGDLREARDLFDKSPVRDV 441

Query: 151 VSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQ 210
           V W  MI GY +    ++ +  ++ ++   +  ++F+   +LT C +L  L+  + +HG 
Sbjct: 442 VLWTAMINGYVQFHHFDDAVALFREMQIQRVKPDKFTVVTLLTGCAQLGALEQGKWIHGY 501

Query: 211 VLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESA 270
           +       +VV+ +++++ Y+KCG +  +  +F E + +D  +WT+++ G A  G    A
Sbjct: 502 LDENRITMDVVVGTALIEMYSKCGCVDKSLEIFYELEDKDTASWTSIICGLAMNGKTSEA 561

Query: 271 SKLFNEM----PEKNPVSWTTLIAGYTRNGLGQKALELFTRM-MILRIRP 315
            +LF+EM     + + +++  +++  +  GL ++    F  M  + RI P
Sbjct: 562 LRLFSEMERVGAKPDDITFIGVLSACSHGGLVEEGRRFFNSMKKVHRIEP 611



 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 106/451 (23%), Positives = 203/451 (45%), Gaps = 69/451 (15%)

Query: 130 ANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFA 189
           ++LG +++A  +F+ + +  +  +N M+  YAK G + + L  ++ LR   +  + F++ 
Sbjct: 188 SSLGNLRYAEKIFNYVQDPSLFVYNVMVKMYAKRGILRKVLLLFQQLREDGLWPDGFTYP 247

Query: 190 GILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDAR 249
            +L     L +++   +V G ++ TG   +  + +S++D Y +   + +A++LFDE   R
Sbjct: 248 FVLKAIGCLRDVRQGEKVRGFIVKTGMDLDNYVYNSLIDMYYELSNVENAKKLFDEMTTR 307

Query: 250 DVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMM 309
           D ++W  M+SGY +    E A   F EM ++                 G +         
Sbjct: 308 DSVSWNVMISGYVRCRRFEDAINTFREMQQE-----------------GNE--------- 341

Query: 310 ILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLN 369
               +P++ T  S L AC ++ +L+ G ++H + +R      T + ++L+DMY+KCGCLN
Sbjct: 342 ----KPDEATVVSTLSACTALKNLELGDEIHNY-VRKELGFTTRIDNALLDMYAKCGCLN 396

Query: 370 DGRQVFDLTDNK------------------------------ENSMLWNTMISALTQHGY 399
             R +FD    K                               + +LW  MI+   Q  +
Sbjct: 397 IARNIFDEMSMKNVICWTSMISGYINCGDLREARDLFDKSPVRDVVLWTAMINGYVQFHH 456

Query: 400 DEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHA 459
            + A+ LF +M    VKPDK T+  +L  C   G +++G  +      +  I  +     
Sbjct: 457 FDDAVALFREMQIQRVKPDKFTVVTLLTGCAQLGALEQG-KWIHGYLDENRITMDVVVGT 515

Query: 460 CLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQL--IDQN 517
            LIE+ ++ GC D+ +    ++  + D+  W ++     ++G      ++  ++  +   
Sbjct: 516 ALIEMYSKCGCVDKSLEIFYELE-DKDTASWTSIICGLAMNGKTSEALRLFSEMERVGAK 574

Query: 518 PQSSATHGLLSSIYSALGKGRLVEKVRQLIN 548
           P      G+L    SA   G LVE+ R+  N
Sbjct: 575 PDDITFIGVL----SACSHGGLVEEGRRFFN 601



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 70/273 (25%), Positives = 136/273 (49%), Gaps = 13/273 (4%)

Query: 249 RDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRM 308
           RD +         + LG++  A K+FN + + +   +  ++  Y + G+ +K L LF ++
Sbjct: 175 RDTINKLMAFCADSSLGNLRYAEKIFNYVQDPSLFVYNVMVKMYAKRGILRKVLLLFQQL 234

Query: 309 MILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCL 368
               + P+  T+   L A   +  ++ G++V GF+++T    +  V +SLIDMY +   +
Sbjct: 235 REDGLWPDGFTYPFVLKAIGCLRDVRQGEKVRGFIVKTGMDLDNYVYNSLIDMYYELSNV 294

Query: 369 NDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVR-SSVKPDKITLAVILN 427
            + +++FD    ++ S+ WN MIS   +    E AI  F +M +  + KPD+ T+   L+
Sbjct: 295 ENAKKLFDEMTTRD-SVSWNVMISGYVRCRRFEDAINTFREMQQEGNEKPDEATVVSTLS 353

Query: 428 ACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDS 487
           ACT    ++ G      +  +LG     ++   L+++ A+ GC +   N  ++M  + + 
Sbjct: 354 ACTALKNLELGDEIHNYVRKELGFTTRIDN--ALLDMYAKCGCLNIARNIFDEMSMK-NV 410

Query: 488 YLWNALHGVCRIHGNIDMG--RKVVDQLIDQNP 518
             W ++     I G I+ G  R+  D L D++P
Sbjct: 411 ICWTSM-----ISGYINCGDLREARD-LFDKSP 437


>gi|225427576|ref|XP_002268530.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Vitis vinifera]
          Length = 631

 Score =  323 bits (828), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 164/473 (34%), Positives = 273/473 (57%), Gaps = 17/473 (3%)

Query: 135 MKHARNLFDNMAERDVVSWNTMIIGYAKSG-AVEEGLKFYKVLRRFSISCNEFSFAGILT 193
           + +AR +F +M   +  S+NT+I   ++S    +  L F +++   S+  N F+F  +  
Sbjct: 61  LDYARKIFRSMHRPNCFSYNTLIRALSESNDPCDALLVFIEMVEDCSVEPNCFTFPSVFK 120

Query: 194 ICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLF------DETD 247
            C + E L+  RQVHG  +  G  S+  + S++V  Y  CG + DA RLF      D  D
Sbjct: 121 ACGRAERLREGRQVHGLAVKFGLDSDEFVVSNVVRMYLSCGVMEDAHRLFYRRVFVDGCD 180

Query: 248 A---------RDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLG 298
                      DV+ W  M+ GY ++G++E A  LF+EMP+++ VSW  +IAGY ++G  
Sbjct: 181 GIRDKKRRVDGDVVLWNVMIDGYVRIGELEVARNLFDEMPQRSVVSWNVMIAGYAQSGHF 240

Query: 299 QKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSL 358
           ++A+E+F  M +  + PN  T  S L A + + +L+ GK VH + +R N   + ++ S+L
Sbjct: 241 KEAVEVFREMQMAEVPPNYVTLVSVLPAMSRLGALELGKWVHLYAVRNNIGVDDVLGSAL 300

Query: 359 IDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPD 418
           IDMY+KCG +    QVF+    K N + W+T+I+ L  HG  +  +  F DM R+ V P 
Sbjct: 301 IDMYAKCGSIEKALQVFEGLP-KRNVVTWSTIIAGLAMHGRAKDTLDHFEDMERAGVMPS 359

Query: 419 KITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQL 478
            +T   +L+AC+H+GLV EG  +F+ M    G+ P  EH+ C+++LL +AG  ++    +
Sbjct: 360 DVTYIGLLSACSHAGLVNEGRWFFDHMVRVSGLEPRIEHYGCMVDLLGRAGLLEESEELI 419

Query: 479 EKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGR 538
             MP + D  +W AL G C++HGN++MG++V + L++  P  S ++  LS+IY++LG   
Sbjct: 420 LNMPIKPDDVIWKALLGACKMHGNVEMGKRVAEHLMELAPHDSGSYVALSNIYASLGNWE 479

Query: 539 LVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLA 591
            V KVR ++ E   +K+   SWIE++  +H F V D  HP    ++S+L++++
Sbjct: 480 GVAKVRLMMKEMDVRKDPGCSWIELDGVIHEFLVEDDSHPKSKKIHSMLQEMS 532



 Score =  132 bits (333), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 91/369 (24%), Positives = 167/369 (45%), Gaps = 48/369 (13%)

Query: 54  TLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVF-- 111
           T   + + C  ++ L+ G++VH  L +        F+ ++++ MY  CG   DA ++F  
Sbjct: 114 TFPSVFKACGRAERLREGRQVH-GLAVKFGLDSDEFVVSNVVRMYLSCGVMEDAHRLFYR 172

Query: 112 -------DKIPVK------NLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMII 158
                  D I  K      ++  +N M+ GY  +G ++ ARNLFD M +R VVSWN MI 
Sbjct: 173 RVFVDGCDGIRDKKRRVDGDVVLWNVMIDGYVRIGELEVARNLFDEMPQRSVVSWNVMIA 232

Query: 159 GYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLS 218
           GYA+SG  +E ++ ++ ++   +  N  +   +L    +L  L+L + VH   +      
Sbjct: 233 GYAQSGHFKEAVEVFREMQMAEVPPNYVTLVSVLPAMSRLGALELGKWVHLYAVRNNIGV 292

Query: 219 NVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMP 278
           + V+ S+++D YAKCG +  A ++F+    R+V+TW+T                      
Sbjct: 293 DDVLGSALIDMYAKCGSIEKALQVFEGLPKRNVVTWST---------------------- 330

Query: 279 EKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQ 338
                    +IAG   +G  +  L+ F  M    + P+  T+   L AC+    +  G+ 
Sbjct: 331 ---------IIAGLAMHGRAKDTLDHFEDMERAGVMPSDVTYIGLLSACSHAGLVNEGRW 381

Query: 339 VHGFLIRTNFRSNTIV-MSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQH 397
               ++R +     I     ++D+  + G L +  ++      K + ++W  ++ A   H
Sbjct: 382 FFDHMVRVSGLEPRIEHYGCMVDLLGRAGLLEESEELILNMPIKPDDVIWKALLGACKMH 441

Query: 398 GYDEQAIRL 406
           G  E   R+
Sbjct: 442 GNVEMGKRV 450



 Score = 92.8 bits (229), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 84/370 (22%), Positives = 156/370 (42%), Gaps = 66/370 (17%)

Query: 229 AYAKCGELSDARRLFDE----TDARDVLTWTTMV--SGYAKLGDMESASKLFNEMPEKNP 282
           ++  C  + D ++L  +       RD L    ++  S  +   D++ A K+F  M   N 
Sbjct: 17  SFFPCKTMQDLKQLHAQMIKTAQIRDPLAAAELLRFSAVSDHRDLDYARKIFRSMHRPNC 76

Query: 283 VSWTTLIAGYTRNGLGQKALELFTRMM-ILRIRPNQHTFSSCLCACASIVSLKHGKQVHG 341
            S+ TLI   + +     AL +F  M+    + PN  TF S   AC     L+ G+QVHG
Sbjct: 77  FSYNTLIRALSESNDPCDALLVFIEMVEDCSVEPNCFTFPSVFKACGRAERLREGRQVHG 136

Query: 342 FLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVF----------DLTDNKE--------- 382
             ++    S+  V+S+++ MY  CG + D  ++F           + D K          
Sbjct: 137 LAVKFGLDSDEFVVSNVVRMYLSCGVMEDAHRLFYRRVFVDGCDGIRDKKRRVDGDVVLW 196

Query: 383 NSML--------------------------WNTMISALTQHGYDEQAIRLFHDMVRSSVK 416
           N M+                          WN MI+   Q G+ ++A+ +F +M  + V 
Sbjct: 197 NVMIDGYVRIGELEVARNLFDEMPQRSVVSWNVMIAGYAQSGHFKEAVEVFREMQMAEVP 256

Query: 417 PDKITLAVILNACTHSGLVQEG-LTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLM 475
           P+ +TL  +L A +  G ++ G   +  ++ +++G+  +    + LI++ A+ G  ++ +
Sbjct: 257 PNYVTLVSVLPAMSRLGALELGKWVHLYAVRNNIGV--DDVLGSALIDMYAKCGSIEKAL 314

Query: 476 NQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQN-----PQSSATHGLLSSI 530
              E +P + +   W+ +     +HG     +  +D   D       P      GLLS+ 
Sbjct: 315 QVFEGLP-KRNVVTWSTIIAGLAMHGR---AKDTLDHFEDMERAGVMPSDVTYIGLLSAC 370

Query: 531 YSA--LGKGR 538
             A  + +GR
Sbjct: 371 SHAGLVNEGR 380


>gi|449521645|ref|XP_004167840.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31430-like, partial [Cucumis sativus]
          Length = 735

 Score =  323 bits (828), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 170/480 (35%), Positives = 279/480 (58%), Gaps = 8/480 (1%)

Query: 120 FSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLK-FYKVLRR 178
           + YN+++  Y  L  +++A+ LFD M  RD VSWN MI GY +    E+ +  F ++ + 
Sbjct: 233 YVYNSLIDMYYELSNVENAKKLFDEMTTRDSVSWNVMISGYVRCRRFEDAINTFREMQQE 292

Query: 179 FSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVT-GFLSNVVISSSIVDAYAKCGELS 237
            +   +E +    L+ C  L+ L+L  ++H  V    GF +   I ++++D YAKCG L+
Sbjct: 293 GNEKPDEATVVSTLSACTALKNLELGDEIHNYVRKELGFTTR--IDNALLDMYAKCGCLN 350

Query: 238 DARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGL 297
            AR +FDE   ++V+ WT+M+SGY   GD+  A  LF++ P ++ V WT +I GY +   
Sbjct: 351 IARNIFDEMSMKNVICWTSMISGYINCGDLREARDLFDKSPVRDVVLWTAMINGYVQFHH 410

Query: 298 GQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSS 357
              A+ LF  M I +I+P++ T  + L  CA + +L+ GK +HG+L       + +V ++
Sbjct: 411 FDDAVALFREMQIQKIKPDKFTVVTLLTGCAQLGALEQGKWIHGYLDENRITMDVVVGTA 470

Query: 358 LIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKP 417
           LI+MYSKCGC++   ++F   ++K+ +  W ++I  L  +G   +A+RLF +M R   KP
Sbjct: 471 LIEMYSKCGCVDKSLEIFYELEDKDTAS-WTSIICGLAMNGKTSEALRLFSEMERVGAKP 529

Query: 418 DKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQ 477
           D IT   +L+AC+H GLV+EG  +F SM     I P  EH+ C+I+LL +AG  D+    
Sbjct: 530 DDITFIGVLSACSHGGLVEEGRRFFNSMKKVHRIEPKVEHYGCVIDLLGRAGLLDEAEEL 589

Query: 478 LEKMPYEHDSY---LWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSAL 534
           ++++P E+      L+ AL   CRIH N+DMG ++  +L +     S+ H LL++IY+++
Sbjct: 590 IQEIPIENCEIVVPLYGALLSACRIHNNVDMGERLAKKLENIESCDSSIHTLLANIYASV 649

Query: 535 GKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQM 594
            +    +KVR+ + E   KK    S IE++  VH F V D  HP    + S+L ++ GQ+
Sbjct: 650 DRWEDAKKVRRKMKELGVKKMPGCSLIEVDGIVHEFLVGDPSHPEMIEICSMLNRVTGQL 709



 Score =  152 bits (383), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 84/290 (28%), Positives = 158/290 (54%), Gaps = 8/290 (2%)

Query: 32  QLSEAISSLDLLAQRGIRLPAE-TLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFL 90
           +  +AI++   + Q G   P E T+   L  C   K+L+LG  +H +++  +    TT +
Sbjct: 278 RFEDAINTFREMQQEGNEKPDEATVVSTLSACTALKNLELGDEIHNYVR--KELGFTTRI 335

Query: 91  SNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDV 150
            N L+ MY KCG    AR +FD++ +KN+  + +M+SGY N G ++ AR+LFD    RDV
Sbjct: 336 DNALLDMYAKCGCLNIARNIFDEMSMKNVICWTSMISGYINCGDLREARDLFDKSPVRDV 395

Query: 151 VSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQ 210
           V W  MI GY +    ++ +  ++ ++   I  ++F+   +LT C +L  L+  + +HG 
Sbjct: 396 VLWTAMINGYVQFHHFDDAVALFREMQIQKIKPDKFTVVTLLTGCAQLGALEQGKWIHGY 455

Query: 211 VLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESA 270
           +       +VV+ +++++ Y+KCG +  +  +F E + +D  +WT+++ G A  G    A
Sbjct: 456 LDENRITMDVVVGTALIEMYSKCGCVDKSLEIFYELEDKDTASWTSIICGLAMNGKTSEA 515

Query: 271 SKLFNEM----PEKNPVSWTTLIAGYTRNGLGQKALELFTRM-MILRIRP 315
            +LF+EM     + + +++  +++  +  GL ++    F  M  + RI P
Sbjct: 516 LRLFSEMERVGAKPDDITFIGVLSACSHGGLVEEGRRFFNSMKKVHRIEP 565



 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 105/451 (23%), Positives = 203/451 (45%), Gaps = 69/451 (15%)

Query: 130 ANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFA 189
           ++LG +++A  +F+ + +  +  +N M+  YAK G + + L  ++ LR   +  + F++ 
Sbjct: 142 SSLGNLRYAEKIFNYVQDPSLFVYNVMVKIYAKRGILRKVLLLFQQLREDGLWPDGFTYP 201

Query: 190 GILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDAR 249
            +L     L +++   +V G ++ TG   +  + +S++D Y +   + +A++LFDE   R
Sbjct: 202 FVLKAIGCLRDVRQGEKVRGFIVKTGMDLDNYVYNSLIDMYYELSNVENAKKLFDEMTTR 261

Query: 250 DVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMM 309
           D ++W  M+SGY +    E A   F EM ++                 G +         
Sbjct: 262 DSVSWNVMISGYVRCRRFEDAINTFREMQQE-----------------GNE--------- 295

Query: 310 ILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLN 369
               +P++ T  S L AC ++ +L+ G ++H + +R      T + ++L+DMY+KCGCLN
Sbjct: 296 ----KPDEATVVSTLSACTALKNLELGDEIHNY-VRKELGFTTRIDNALLDMYAKCGCLN 350

Query: 370 DGRQVFDLTDNK------------------------------ENSMLWNTMISALTQHGY 399
             R +FD    K                               + +LW  MI+   Q  +
Sbjct: 351 IARNIFDEMSMKNVICWTSMISGYINCGDLREARDLFDKSPVRDVVLWTAMINGYVQFHH 410

Query: 400 DEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHA 459
            + A+ LF +M    +KPDK T+  +L  C   G +++G  +      +  I  +     
Sbjct: 411 FDDAVALFREMQIQKIKPDKFTVVTLLTGCAQLGALEQG-KWIHGYLDENRITMDVVVGT 469

Query: 460 CLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQL--IDQN 517
            LIE+ ++ GC D+ +    ++  + D+  W ++     ++G      ++  ++  +   
Sbjct: 470 ALIEMYSKCGCVDKSLEIFYELE-DKDTASWTSIICGLAMNGKTSEALRLFSEMERVGAK 528

Query: 518 PQSSATHGLLSSIYSALGKGRLVEKVRQLIN 548
           P      G+L    SA   G LVE+ R+  N
Sbjct: 529 PDDITFIGVL----SACSHGGLVEEGRRFFN 555



 Score = 95.1 bits (235), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 70/273 (25%), Positives = 136/273 (49%), Gaps = 13/273 (4%)

Query: 249 RDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRM 308
           RD +         + LG++  A K+FN + + +   +  ++  Y + G+ +K L LF ++
Sbjct: 129 RDTINKLMAFCADSSLGNLRYAEKIFNYVQDPSLFVYNVMVKIYAKRGILRKVLLLFQQL 188

Query: 309 MILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCL 368
               + P+  T+   L A   +  ++ G++V GF+++T    +  V +SLIDMY +   +
Sbjct: 189 REDGLWPDGFTYPFVLKAIGCLRDVRQGEKVRGFIVKTGMDLDNYVYNSLIDMYYELSNV 248

Query: 369 NDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVR-SSVKPDKITLAVILN 427
            + +++FD    ++ S+ WN MIS   +    E AI  F +M +  + KPD+ T+   L+
Sbjct: 249 ENAKKLFDEMTTRD-SVSWNVMISGYVRCRRFEDAINTFREMQQEGNEKPDEATVVSTLS 307

Query: 428 ACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDS 487
           ACT    ++ G      +  +LG     ++   L+++ A+ GC +   N  ++M  + + 
Sbjct: 308 ACTALKNLELGDEIHNYVRKELGFTTRIDN--ALLDMYAKCGCLNIARNIFDEMSMK-NV 364

Query: 488 YLWNALHGVCRIHGNIDMG--RKVVDQLIDQNP 518
             W ++     I G I+ G  R+  D L D++P
Sbjct: 365 ICWTSM-----ISGYINCGDLREARD-LFDKSP 391


>gi|225430143|ref|XP_002282128.1| PREDICTED: pentatricopeptide repeat-containing protein At2g20540
           [Vitis vinifera]
          Length = 537

 Score =  323 bits (827), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 173/510 (33%), Positives = 278/510 (54%), Gaps = 10/510 (1%)

Query: 90  LSNHLISMYFKCGSDVDARKVFDKIPVKNL----FSYNNMLSGYANLGMMKHARNLFDNM 145
           + +  + +   C + V+ +K+   I   +L    F    M+    + G  ++A  LF  +
Sbjct: 13  MEDMFVPILKDCPNIVELKKIHAHIVKFSLSQSSFLVTKMVDVCNHYGETEYANLLFKGV 72

Query: 146 AERDVVSWNTMIIGYAKSGAVEEGLKFYKVL-----RRFSISCNEFSFAGILTICVKLEE 200
           A+ +   +N MI  Y  +      +  YK +         I  ++F+F  ++  C  L  
Sbjct: 73  ADPNAFLYNAMIRAYKHNKVYVLAITVYKQMLGNPHGENPIFPDKFTFPFVVKSCAGLMC 132

Query: 201 LKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSG 260
             L +QVHG V   G  SN V+ +S+V+ Y KC  L DA R+F+E   RD ++W T++SG
Sbjct: 133 YDLGKQVHGHVFKFGQKSNTVVENSLVEMYVKCDSLDDAHRVFEEMTERDAVSWNTLISG 192

Query: 261 YAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTF 320
           + +LG M  A  +F EM +K   SWT +++GY R G    ALE F RM ++ I P++ + 
Sbjct: 193 HVRLGQMRRARAIFEEMQDKTIFSWTAIVSGYARIGCYADALEFFRRMQMVGIEPDEISL 252

Query: 321 SSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDN 380
            S L  CA + +L+ GK +H +  +  F  N  V ++LI+MY+KCG ++ GR++FD    
Sbjct: 253 VSVLPDCAQLGALELGKWIHIYADKAGFLRNICVCNALIEMYAKCGSIDQGRRLFDQMKE 312

Query: 381 KENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLT 440
           + + + W+TMI  L  HG   +AI LF +M ++ ++P  IT   +L AC H+GL+ EGL 
Sbjct: 313 R-DVISWSTMIVGLANHGRAREAIELFQEMQKAKIEPSIITFVGLLTACAHAGLLNEGLR 371

Query: 441 YFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIH 500
           YFESM  D  I P  EH+ CL+ LL  +G  DQ +  ++KMP + DS +W +L   CR H
Sbjct: 372 YFESMKRDYNIEPGVEHYGCLVNLLGLSGRLDQALELVKKMPRKPDSPIWGSLLSSCRSH 431

Query: 501 GNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISW 560
           GN+ +    ++ L++  P  +  + LLS++Y+ LGK   V ++R+L+  +  KK    S 
Sbjct: 432 GNLKIAVIAMEHLLELEPADTGNYVLLSNLYADLGKWDGVSRMRKLMRSKSMKKTPGCSS 491

Query: 561 IEIENKVHAFSVSDSLHPMRDVLYSVLEQL 590
           IE++N V  F+  D   P    +  VL+ L
Sbjct: 492 IEVDNMVQEFASGDDSKPFSKAICRVLKLL 521



 Score =  181 bits (460), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 104/347 (29%), Positives = 173/347 (49%), Gaps = 35/347 (10%)

Query: 54  TLAFILQQCAESKSLKLGKRVHLHL-KLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFD 112
           T  F+++ CA      LGK+VH H+ K  Q+    T + N L+ MY KC S  DA +VF+
Sbjct: 119 TFPFVVKSCAGLMCYDLGKQVHGHVFKFGQKSN--TVVENSLVEMYVKCDSLDDAHRVFE 176

Query: 113 KIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKF 172
           ++  ++  S+N ++SG+  LG M+ AR +F+ M ++ + SW  ++ GYA+ G   + L+F
Sbjct: 177 EMTERDAVSWNTLISGHVRLGQMRRARAIFEEMQDKTIFSWTAIVSGYARIGCYADALEF 236

Query: 173 YKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAK 232
           ++ ++   I  +E S   +L  C +L  L+L + +H      GFL N+ + +++++ YAK
Sbjct: 237 FRRMQMVGIEPDEISLVSVLPDCAQLGALELGKWIHIYADKAGFLRNICVCNALIEMYAK 296

Query: 233 CGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGY 292
           CG +   RRLFD+   RDV++W+TM+ G A  G    A +LF EM               
Sbjct: 297 CGSIDQGRRLFDQMKERDVISWSTMIVGLANHGRAREAIELFQEM--------------- 341

Query: 293 TRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRT-NFRSN 351
                 QKA          +I P+  TF   L ACA    L  G +    + R  N    
Sbjct: 342 ------QKA----------KIEPSIITFVGLLTACAHAGLLNEGLRYFESMKRDYNIEPG 385

Query: 352 TIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHG 398
                 L+++    G L+   ++      K +S +W +++S+   HG
Sbjct: 386 VEHYGCLVNLLGLSGRLDQALELVKKMPRKPDSPIWGSLLSSCRSHG 432



 Score = 72.0 bits (175), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 44/157 (28%), Positives = 81/157 (51%), Gaps = 15/157 (9%)

Query: 31  GQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFL 90
           G  ++A+     +   GI     +L  +L  CA+  +L+LGK +H++           FL
Sbjct: 228 GCYADALEFFRRMQMVGIEPDEISLVSVLPDCAQLGALELGKWIHIY------ADKAGFL 281

Query: 91  -----SNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNM 145
                 N LI MY KCGS    R++FD++  +++ S++ M+ G AN G  + A  LF  M
Sbjct: 282 RNICVCNALIEMYAKCGSIDQGRRLFDQMKERDVISWSTMIVGLANHGRAREAIELFQEM 341

Query: 146 A----ERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRR 178
                E  ++++  ++   A +G + EGL++++ ++R
Sbjct: 342 QKAKIEPSIITFVGLLTACAHAGLLNEGLRYFESMKR 378


>gi|347954536|gb|AEP33768.1| organelle transcript processing 82, partial [Nasturtium officinale]
          Length = 670

 Score =  323 bits (827), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 188/568 (33%), Positives = 302/568 (53%), Gaps = 52/568 (9%)

Query: 35  EAISSLDL---LAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLH-LKLTQRKTPTTFL 90
           + +S+L L   +   G+   + T  F+L+ CA+ K+ K G ++H H LKL        ++
Sbjct: 43  DPVSALKLYVCMISLGLLPNSYTFPFLLKSCAKLKASKEGLQIHGHVLKLGYELD--LYV 100

Query: 91  SNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDV 150
              LISMY +     DA KVFD+   +++ SY  +++GYA+ G ++ ARN+FD +  +DV
Sbjct: 101 HTSLISMYVQNERLEDAHKVFDRSSHRDVVSYTALVTGYASRGYIESARNMFDEIPVKDV 160

Query: 151 VSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQ 210
           VSWN MI GY ++G  +E L+ +K + + ++  +E +   +++   +   ++L RQVH  
Sbjct: 161 VSWNAMISGYVETGNYKEALELFKEMMKTNVRPDESTMVTVISASARSGSIELGRQVHSW 220

Query: 211 VLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESA 270
           +   GF SN+ I ++++D Y+KCGE                               ME+A
Sbjct: 221 IADHGFGSNLKIVNALIDFYSKCGE-------------------------------META 249

Query: 271 SKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASI 330
             LF  +  K+ +SW  LI GYT   L ++AL LF  M+     PN  T  S L ACA +
Sbjct: 250 CGLFLGLSYKDVISWNILIGGYTHLNLYKEALLLFQEMLRSGESPNDVTMLSILHACAHL 309

Query: 331 VSLKHGKQVHGFLIR--TNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSML-- 386
            ++  G+ +H ++ +      + + + +SLIDMYSKCG +    QVF       NSML  
Sbjct: 310 GAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYSKCGDIEAAHQVF-------NSMLHK 362

Query: 387 ----WNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYF 442
               WN MI     HG    A  +F  M ++ +KPD IT   +L+AC+H+G++  G   F
Sbjct: 363 SLPAWNAMIFGFAMHGRANAAFDIFSRMRKNEIKPDDITFVGLLSACSHAGMLDLGRHIF 422

Query: 443 ESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGN 502
            SMTH+  I P  EH+ C+I+LL  +G   +    +  M  E D  +W +L   C++HGN
Sbjct: 423 RSMTHNYKITPKLEHYGCMIDLLGHSGLFKEAEEMISTMTMEPDGVIWCSLLKACKMHGN 482

Query: 503 IDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIE 562
           +++G K    L    P +  ++ LLS+IY+  G+   V ++R L+N++  KK    S IE
Sbjct: 483 VELGEKFAQNLFKIEPNNPGSYVLLSNIYATAGRWNEVARIRGLLNDKGMKKVPGCSSIE 542

Query: 563 IENKVHAFSVSDSLHPMRDVLYSVLEQL 590
           I++ VH F + D  HP    +Y +LE++
Sbjct: 543 IDSVVHEFIIGDKFHPRNREIYGMLEEM 570



 Score =  206 bits (523), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 123/403 (30%), Positives = 214/403 (53%), Gaps = 15/403 (3%)

Query: 135 MKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTI 194
           + +A ++F+ + E +++ WNTM  G+A S      LK Y  +    +  N ++F  +L  
Sbjct: 13  LPYAISVFETIQEPNLLIWNTMFRGHALSPDPVSALKLYVCMISLGLLPNSYTFPFLLKS 72

Query: 195 CVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTW 254
           C KL+  K   Q+HG VL  G+  ++ + +S++  Y +   L DA ++FD +  RDV+++
Sbjct: 73  CAKLKASKEGLQIHGHVLKLGYELDLYVHTSLISMYVQNERLEDAHKVFDRSSHRDVVSY 132

Query: 255 TTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIR 314
           T +V+GYA  G +ESA  +F+E+P K+ VSW  +I+GY   G  ++ALELF  MM   +R
Sbjct: 133 TALVTGYASRGYIESARNMFDEIPVKDVVSWNAMISGYVETGNYKEALELFKEMMKTNVR 192

Query: 315 PNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQV 374
           P++ T  + + A A   S++ G+QVH ++    F SN  ++++LID YSKCG +     +
Sbjct: 193 PDESTMVTVISASARSGSIELGRQVHSWIADHGFGSNLKIVNALIDFYSKCGEMETACGL 252

Query: 375 FDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGL 434
           F L  + ++ + WN +I   T     ++A+ LF +M+RS   P+ +T+  IL+AC H G 
Sbjct: 253 F-LGLSYKDVISWNILIGGYTHLNLYKEALLLFQEMLRSGESPNDVTMLSILHACAHLGA 311

Query: 435 VQEGLTYFESMTHDL-GIIPNQEHHACLIELLAQAG---CSDQLMNQL--EKMPYEHDSY 488
           +  G      +   L G+         LI++ ++ G    + Q+ N +  + +P      
Sbjct: 312 IDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYSKCGDIEAAHQVFNSMLHKSLP------ 365

Query: 489 LWNALHGVCRIHGNIDMGRKVVDQLIDQ--NPQSSATHGLLSS 529
            WNA+     +HG  +    +  ++      P      GLLS+
Sbjct: 366 AWNAMIFGFAMHGRANAAFDIFSRMRKNEIKPDDITFVGLLSA 408



 Score = 92.4 bits (228), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 84/417 (20%), Positives = 163/417 (39%), Gaps = 79/417 (18%)

Query: 18  NCLIQSFLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLH 77
           N +I  +   +  G   EA+     + +  +R    T+  ++   A S S++LG++VH  
Sbjct: 164 NAMISGY---VETGNYKEALELFKEMMKTNVRPDESTMVTVISASARSGSIELGRQVHSW 220

Query: 78  LKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKH 137
           +           + N LI  Y KCG    A  +F  +  K++ S+N ++ GY +L + K 
Sbjct: 221 IA-DHGFGSNLKIVNALIDFYSKCGEMETACGLFLGLSYKDVISWNILIGGYTHLNLYKE 279

Query: 138 ARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVK 197
           A  LF  M                +SG                 S N+ +   IL  C  
Sbjct: 280 ALLLFQEM---------------LRSGE----------------SPNDVTMLSILHACAH 308

Query: 198 LEELKLTRQVHGQV--LVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWT 255
           L  + + R +H  +   + G  +   + +S++D Y+KCG++  A ++F+    + +  W 
Sbjct: 309 LGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYSKCGDIEAAHQVFNSMLHKSLPAWN 368

Query: 256 TMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRP 315
            M+ G+A                                +G    A ++F+RM    I+P
Sbjct: 369 AMIFGFA-------------------------------MHGRANAAFDIFSRMRKNEIKP 397

Query: 316 NQHTFSSCLCACASIVSLKHGKQV-----HGFLIRTNFRSNTIVMSSLIDMYSKCGCLND 370
           +  TF   L AC+    L  G+ +     H + I             +ID+    G   +
Sbjct: 398 DDITFVGLLSACSHAGMLDLGRHIFRSMTHNYKITPKLEH----YGCMIDLLGHSGLFKE 453

Query: 371 GRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILN 427
             ++      + + ++W +++ A   HG  E   +   ++ +  ++P+     V+L+
Sbjct: 454 AEEMISTMTMEPDGVIWCSLLKACKMHGNVELGEKFAQNLFK--IEPNNPGSYVLLS 508


>gi|347954522|gb|AEP33761.1| organelle transcript processing 82, partial [Crucihimalaya
           wallichii]
          Length = 710

 Score =  323 bits (827), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 183/556 (32%), Positives = 299/556 (53%), Gaps = 38/556 (6%)

Query: 34  SEAISSLDL---LAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFL 90
           S+ +S+L L   +   G+     T  F+L+ CA+SK+ + G+++H H+ L        ++
Sbjct: 82  SDPVSALYLYVCMISLGLLPNCYTFPFLLKSCAKSKAFREGQQIHGHV-LKLGYDLDLYV 140

Query: 91  SNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDV 150
              LISMY + G   DARKVFD+   +++ SY  +++GYA+ G +  A+ +FD +  +DV
Sbjct: 141 HTSLISMYVQNGRLEDARKVFDQSSHRDVVSYTALITGYASKGYIASAQKMFDEIPIKDV 200

Query: 151 VSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQ 210
           VSWN MI GYA++G  +E L+ +K + + ++  +E +   +++ C +   ++L RQVH  
Sbjct: 201 VSWNAMISGYAETGNNKEALELFKEMMKTNVRPDESTMVSVVSACAQSASIELGRQVHSW 260

Query: 211 VLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESA 270
           +   GF SN+ I ++++D Y KCGE+                               E+A
Sbjct: 261 IDDHGFGSNLKIVNALIDLYIKCGEV-------------------------------ETA 289

Query: 271 SKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASI 330
             LF  +  K+ +SW TLI GYT   L ++AL LF  M+     PN  T  S L ACA +
Sbjct: 290 CGLFEGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTMLSILPACAHL 349

Query: 331 VSLKHGKQVHGFLIR--TNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWN 388
            +++ G+ +H ++ +      + +   +SLIDMY+KCG +   +QVFD   N+  S  WN
Sbjct: 350 GAIEIGRWIHVYINKRLKGVANASSHRTSLIDMYAKCGDIEAAQQVFDSILNRSLSS-WN 408

Query: 389 TMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHD 448
            MI     HG    A  +F  M ++ ++PD IT   +L+AC+HSG++  G   F SM  D
Sbjct: 409 AMIFGFAMHGRANAAFDIFSRMRKNEIEPDDITFVGLLSACSHSGMLDLGRHIFRSMKED 468

Query: 449 LGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRK 508
             I P  EH+ C+I+LL  +G   +    +  M  E D  +W +L   C+++ N+++G  
Sbjct: 469 YKITPKLEHYGCMIDLLGHSGLFKEAEEMINTMEMEPDGVIWCSLLKACKMYANVELGES 528

Query: 509 VVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVH 568
               LI   P++  ++ LLS+IY+  G+   V K+R L+N++  KK    S IEI++ VH
Sbjct: 529 YAQNLIKIEPKNPGSYVLLSNIYATAGRWNEVAKIRALLNDKGMKKVPGCSSIEIDSVVH 588

Query: 569 AFSVSDSLHPMRDVLY 584
            F + D  HP    +Y
Sbjct: 589 EFIIGDKFHPRNREIY 604



 Score =  217 bits (553), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 126/404 (31%), Positives = 215/404 (53%), Gaps = 17/404 (4%)

Query: 135 MKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTI 194
           + +A ++F+ + E +++ WNTM  G+A S      L  Y  +    +  N ++F  +L  
Sbjct: 53  LPYAISVFETIQEPNLLIWNTMFRGHALSSDPVSALYLYVCMISLGLLPNCYTFPFLLKS 112

Query: 195 CVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTW 254
           C K +  +  +Q+HG VL  G+  ++ + +S++  Y + G L DAR++FD++  RDV+++
Sbjct: 113 CAKSKAFREGQQIHGHVLKLGYDLDLYVHTSLISMYVQNGRLEDARKVFDQSSHRDVVSY 172

Query: 255 TTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIR 314
           T +++GYA  G + SA K+F+E+P K+ VSW  +I+GY   G  ++ALELF  MM   +R
Sbjct: 173 TALITGYASKGYIASAQKMFDEIPIKDVVSWNAMISGYAETGNNKEALELFKEMMKTNVR 232

Query: 315 PNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQV 374
           P++ T  S + ACA   S++ G+QVH ++    F SN  ++++LID+Y KCG +     +
Sbjct: 233 PDESTMVSVVSACAQSASIELGRQVHSWIDDHGFGSNLKIVNALIDLYIKCGEVETACGL 292

Query: 375 FDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGL 434
           F+    K+  + WNT+I   T     ++A+ LF +M+RS   P+ +T+  IL AC H G 
Sbjct: 293 FEGLSYKD-VISWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTMLSILPACAHLGA 351

Query: 435 VQEGLTYFESMTHDL-GIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYL---- 489
           ++ G      +   L G+     H   LI++ A+ G        +E      DS L    
Sbjct: 352 IEIGRWIHVYINKRLKGVANASSHRTSLIDMYAKCG-------DIEAAQQVFDSILNRSL 404

Query: 490 --WNALHGVCRIHGNIDMGRKVVDQLIDQ--NPQSSATHGLLSS 529
             WNA+     +HG  +    +  ++      P      GLLS+
Sbjct: 405 SSWNAMIFGFAMHGRANAAFDIFSRMRKNEIEPDDITFVGLLSA 448



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 101/444 (22%), Positives = 177/444 (39%), Gaps = 107/444 (24%)

Query: 31  GQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFL 90
           G   EA+     + +  +R    T+  ++  CA+S S++LG++VH  +           +
Sbjct: 214 GNNKEALELFKEMMKTNVRPDESTMVSVVSACAQSASIELGRQVHSWID-DHGFGSNLKI 272

Query: 91  SNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDV 150
            N LI +Y KCG    A  +F+ +  K++ S+N ++ GY ++ + K A  LF  M     
Sbjct: 273 VNALIDLYIKCGEVETACGLFEGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEM----- 327

Query: 151 VSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQ 210
                      +SG                 S N+ +   IL  C  L  +++ R +H  
Sbjct: 328 ----------LRSGE----------------SPNDVTMLSILPACAHLGAIEIGRWIH-- 359

Query: 211 VLVTGFLSNVVISS----SIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGD 266
           V +   L  V  +S    S++D YAKCG++  A+++FD    R + +W  M+ G+A    
Sbjct: 360 VYINKRLKGVANASSHRTSLIDMYAKCGDIEAAQQVFDSILNRSLSSWNAMIFGFA---- 415

Query: 267 MESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCA 326
                                       +G    A ++F+RM    I P+  TF   L A
Sbjct: 416 ---------------------------MHGRANAAFDIFSRMRKNEIEPDDITFVGLLSA 448

Query: 327 CASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSML 386
           C+    L  G+ +        FRS                     ++ + +T   E+   
Sbjct: 449 CSHSGMLDLGRHI--------FRSM--------------------KEDYKITPKLEH--- 477

Query: 387 WNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMT 446
           +  MI  L   G  ++A  + + M    ++PD +    +L AC     V+ G +Y +++ 
Sbjct: 478 YGCMIDLLGHSGLFKEAEEMINTM---EMEPDGVIWCSLLKACKMYANVELGESYAQNL- 533

Query: 447 HDLGIIP-NQEHHACLIELLAQAG 469
             + I P N   +  L  + A AG
Sbjct: 534 --IKIEPKNPGSYVLLSNIYATAG 555


>gi|449438512|ref|XP_004137032.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g41080-like [Cucumis sativus]
 gi|449526872|ref|XP_004170437.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g41080-like [Cucumis sativus]
          Length = 667

 Score =  322 bits (826), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 180/575 (31%), Positives = 306/575 (53%), Gaps = 38/575 (6%)

Query: 4   NFSPRGINRKNLPNNCLIQSFLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCA 63
           +F+ R ++ K + ++  +Q F SL + G++ +A  +        I       + +LQ C 
Sbjct: 19  SFTVRSLSMK-ISSSASLQEFTSLCNDGRIKQAYDTF----TSEIWSDPSLFSHLLQSCI 73

Query: 64  ESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYN 123
           +  SL  GK+VH  L +T   +   F+SNHL++ Y K G    +  +F  +P +N+ S+N
Sbjct: 74  KLGSLFGGKQVH-SLIITSGGSKDKFISNHLLNFYSKLGQFKSSLVLFSNMPRRNVMSFN 132

Query: 124 NMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISC 183
            +++GY  LG ++ A+ LFD M+ER++ +WN MI G  +    ++ L  +K +       
Sbjct: 133 ILINGYLQLGDLESAQKLFDEMSERNIATWNAMIAGLTQFEFNKQALSLFKEMYGLGFLP 192

Query: 184 NEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLF 243
           +EF+   +L  C  L  L   ++VH  +L  GF  + V+ SS+   Y K G LSD     
Sbjct: 193 DEFTLGSVLRGCAGLRSLLAGQEVHACLLKCGFELSSVVGSSLAHMYIKSGSLSDGE--- 249

Query: 244 DETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALE 303
                                       KL   MP +  V+W TLIAG  +NG  ++ L 
Sbjct: 250 ----------------------------KLIKSMPIRTVVAWNTLIAGKAQNGCPEEVLN 281

Query: 304 LFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYS 363
            +  M +   RP++ TF S L AC+ + +L  G+Q+H  +I+    S   V+SSLI MYS
Sbjct: 282 QYNMMKMAGFRPDKITFVSVLSACSELATLGQGQQIHAEVIKAGASSVLAVVSSLISMYS 341

Query: 364 KCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLA 423
           + GCL D  + F   +N +  +LW++MI+A   HG  E+A+ LFH M    ++ +++T  
Sbjct: 342 RSGCLEDSIKAFVDRENFD-VVLWSSMIAAYGFHGRGEEALELFHQMEDLKMEANEVTFL 400

Query: 424 VILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPY 483
            +L AC+HSGL ++G  YF+ M     + P  EH+ C+++LL +AG  ++    +  MP 
Sbjct: 401 SLLYACSHSGLKEKGTEYFDLMVKKYKLKPRIEHYTCVVDLLGRAGRLEEAEGMIRSMPV 460

Query: 484 EHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKV 543
           + D  +W  L   C++H   +M  ++ +++I  +P  +A++ LLS+I+++      V ++
Sbjct: 461 QPDGIIWKTLLAACKLHKEAEMAERISEEIIKLDPLDAASYVLLSNIHASARNWLNVSQI 520

Query: 544 RQLINERQFKKEQAISWIEIENKVHAFSVSDSLHP 578
           R+ + +R  +KE  ISW+E++N VH FS+ D  HP
Sbjct: 521 RKAMRDRSVRKEPGISWLELKNLVHQFSMGDKSHP 555


>gi|255574235|ref|XP_002528032.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223532562|gb|EEF34350.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 730

 Score =  322 bits (826), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 179/585 (30%), Positives = 311/585 (53%), Gaps = 41/585 (7%)

Query: 15  LPNNCLIQSFLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRV 74
           LP N LI S+   +  G   EA+S+   +  +GIR    T   +L+ C E   +  GK++
Sbjct: 160 LPWNLLISSY---VRNGLHGEALSAYKQMTHKGIRPDKFTYPSVLKACGEKLDIAFGKKL 216

Query: 75  HLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGM 134
           H  +  +       F+ N L+SMY K G    AR +F+ +  ++  S+N M+SGYA+ GM
Sbjct: 217 HASINASCLGW-NLFVHNSLVSMYAKTGELSTARCLFENMLERDDVSWNTMISGYASKGM 275

Query: 135 MKHARNLFDNM----AERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAG 190
            K A  LF  M     E ++++WNT+  G  +SG  EE L+    +R + I  +  +   
Sbjct: 276 WKEAFELFGKMRVEGIELNIITWNTIAGGCVQSGNFEEALELLSHMRSYGIDMDSVATII 335

Query: 191 ILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARD 250
            L  C  +  +KL R++HG  + + +     + ++++  Y++C  L  A  LF  T  ++
Sbjct: 336 GLGACSHIGAIKLGREIHGSAIRSFYDGVDNVKNALITMYSRCKYLRHAYNLFQSTRTKN 395

Query: 251 VLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMI 310
           ++TW +M+SGY  +   E AS LF EM          L++G                   
Sbjct: 396 IITWNSMLSGYTHMDRSEEASFLFREM----------LLSG------------------- 426

Query: 311 LRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLI-RTNFRSNTIVMSSLIDMYSKCGCLN 369
             I PN  T +S L  CA + +L+HGK+ H +++ R  F+   ++ +SL+DMY++ G + 
Sbjct: 427 --IEPNYVTIASILPLCARVANLQHGKEFHCYILRRAGFKDYLLLWNSLVDMYARSGKVL 484

Query: 370 DGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNAC 429
           + +++FD + ++ + + + ++I+     G   +A++LF +M +  +KPD +T+  +L+AC
Sbjct: 485 EAKRLFD-SISRRDEVTYTSLIAGYGIQGEGREALKLFDEMKKRHIKPDHVTMVAVLSAC 543

Query: 430 THSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYL 489
           +HSGLV EG+  FE M    GIIP  EH AC+++L  +AG   +    + +MPY   S +
Sbjct: 544 SHSGLVTEGIKLFELMPSAYGIIPRLEHFACMVDLFGRAGLLHKAKEMITRMPYRPSSAM 603

Query: 490 WNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINE 549
           W  L G CRIHGN ++G    ++L++  P++S  + L++++Y+A G    + KVR  + +
Sbjct: 604 WATLLGACRIHGNAEIGEWAAEKLLEMRPENSGYYVLIANMYAAAGCWSKLAKVRTYMRD 663

Query: 550 RQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQM 594
              +K    +W+++ +    F V D+  P  + LY +LE L   M
Sbjct: 664 LGVRKAPGCAWVDVGSGFFPFLVDDTSKPHVNKLYPLLEGLTELM 708



 Score =  174 bits (442), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 123/436 (28%), Positives = 211/436 (48%), Gaps = 40/436 (9%)

Query: 125 MLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCN 184
           +++ Y N  ++  A  + +N      + WN +I  Y ++G   E L  YK +    I  +
Sbjct: 134 LVTFYTNFDLLADAHTITENSNILHPLPWNLLISSYVRNGLHGEALSAYKQMTHKGIRPD 193

Query: 185 EFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFD 244
           +F++  +L  C +  ++   +++H  +  +    N+ + +S+V  YAK GELS AR LF+
Sbjct: 194 KFTYPSVLKACGEKLDIAFGKKLHASINASCLGWNLFVHNSLVSMYAKTGELSTARCLFE 253

Query: 245 ETDARDVLTWTTMVSGYAKLGDMESASKLFNEMP----EKNPVSWTTLIAGYTRNGLGQK 300
               RD ++W TM+SGYA  G  + A +LF +M     E N ++W T+  G  ++G  ++
Sbjct: 254 NMLERDDVSWNTMISGYASKGMWKEAFELFGKMRVEGIELNIITWNTIAGGCVQSGNFEE 313

Query: 301 ALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLID 360
           ALEL + M    I  +       L AC+ I ++K G+++HG  IR+ +     V ++LI 
Sbjct: 314 ALELLSHMRSYGIDMDSVATIIGLGACSHIGAIKLGREIHGSAIRSFYDGVDNVKNALIT 373

Query: 361 MYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKI 420
           MYS+C  L     +F  T  K N + WN+M+S  T     E+A  LF +M+ S ++P+ +
Sbjct: 374 MYSRCKYLRHAYNLFQSTRTK-NIITWNSMLSGYTHMDRSEEASFLFREMLLSGIEPNYV 432

Query: 421 TLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEK 480
           T+A IL  C     +Q G                +E H C I  L +AG  D L+     
Sbjct: 433 TIASILPLCARVANLQHG----------------KEFH-CYI--LRRAGFKDYLL----- 468

Query: 481 MPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLV 540
                   LWN+L  +    G +   +++ D +   + +   T+  L + Y   G+GR  
Sbjct: 469 --------LWNSLVDMYARSGKVLEAKRLFDSI---SRRDEVTYTSLIAGYGIQGEGREA 517

Query: 541 EKVRQLINERQFKKEQ 556
            K+   + +R  K + 
Sbjct: 518 LKLFDEMKKRHIKPDH 533



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 76/293 (25%), Positives = 130/293 (44%), Gaps = 39/293 (13%)

Query: 159 GYAKSGAVEEGLKFYKVLRRFSISCNE------FSFAGILTICVKLEELKLTRQVHGQVL 212
           G+A  G + +  K + +++R + SC+        S + +L  CV L+ L   +Q+H  ++
Sbjct: 62  GFASQGNLLKAFKTFSLIQRHA-SCSTSDDVVLHSVSSLLLSCVNLKSLSQGKQLHTLII 120

Query: 213 VTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASK 272
             GF  + +I   +V  Y     L+DA  + + ++    L W  ++S             
Sbjct: 121 SLGFEQHPIIVPKLVTFYTNFDLLADAHTITENSNILHPLPWNLLIS------------- 167

Query: 273 LFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVS 332
                              Y RNGL  +AL  + +M    IRP++ T+ S L AC   + 
Sbjct: 168 ------------------SYVRNGLHGEALSAYKQMTHKGIRPDKFTYPSVLKACGEKLD 209

Query: 333 LKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMIS 392
           +  GK++H  +  +    N  V +SL+ MY+K G L+  R +F+    +++ + WNTMIS
Sbjct: 210 IAFGKKLHASINASCLGWNLFVHNSLVSMYAKTGELSTARCLFENMLERDD-VSWNTMIS 268

Query: 393 ALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESM 445
                G  ++A  LF  M    ++ + IT   I   C  SG  +E L     M
Sbjct: 269 GYASKGMWKEAFELFGKMRVEGIELNIITWNTIAGGCVQSGNFEEALELLSHM 321



 Score = 60.5 bits (145), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 43/163 (26%), Positives = 70/163 (42%), Gaps = 5/163 (3%)

Query: 332 SLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMI 391
           SL  GKQ+H  +I   F  + I++  L+  Y+    L D   + +   N  + + WN +I
Sbjct: 108 SLSQGKQLHTLIISLGFEQHPIIVPKLVTFYTNFDLLADAHTITE-NSNILHPLPWNLLI 166

Query: 392 SALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHD-LG 450
           S+  ++G   +A+  +  M    ++PDK T   +L AC     +  G     S+    LG
Sbjct: 167 SSYVRNGLHGEALSAYKQMTHKGIRPDKFTYPSVLKACGEKLDIAFGKKLHASINASCLG 226

Query: 451 IIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNAL 493
              N   H  L+ + A+ G         E M  E D   WN +
Sbjct: 227 W--NLFVHNSLVSMYAKTGELSTARCLFENM-LERDDVSWNTM 266


>gi|225461979|ref|XP_002267354.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
           [Vitis vinifera]
          Length = 632

 Score =  322 bits (826), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 155/442 (35%), Positives = 260/442 (58%), Gaps = 1/442 (0%)

Query: 153 WNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVL 212
           WN+ +   A+  +  + +  +  LR++ +  + F+ + +L  C+ L +L   R +HG V 
Sbjct: 96  WNSCLKALAEGDSPIDAIMLFYRLRQYDVCPDTFTCSSVLRACLNLLDLSNGRILHGVVE 155

Query: 213 VTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASK 272
             GF SN+ + + IV  YA CGE+ +AR LF++   RDV+TW  M++   K GD E A  
Sbjct: 156 KVGFRSNLYLQNMIVHLYASCGEMGEARLLFEKMPQRDVVTWNIMIAQLIKQGDHEGAYD 215

Query: 273 LFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVS 332
           LF+ MPE+N  SWT++IAGY + G  ++A+ LF +M    ++ N+ T  + L ACA + +
Sbjct: 216 LFSRMPERNVRSWTSMIAGYVQCGKAKEAIHLFAKMEEAGVKCNEVTVVAVLAACADLGA 275

Query: 333 LKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMIS 392
           L  G ++H +  R  F+ N  + ++LIDMY KCGCL +  +VF+  + +   + W+ MI 
Sbjct: 276 LDLGMRIHEYSNRHGFKRNVRISNTLIDMYVKCGCLEEACKVFEEMEER-TVVSWSAMIG 334

Query: 393 ALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGII 452
            L  HG  E+A+RLF DM +  ++P+ +T   +L+AC+H GL+ EG  +F SMT D GII
Sbjct: 335 GLAMHGRAEEALRLFSDMSQVGIEPNGVTFIGLLHACSHMGLISEGRRFFASMTRDYGII 394

Query: 453 PNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQ 512
           P  EH+ C+++LL++AG   +    +  MP + +  +W AL G CR+H N++M  + +  
Sbjct: 395 PQIEHYGCMVDLLSRAGLLHEAHEFILNMPMKPNGVVWGALLGACRVHKNVEMAEEAIKH 454

Query: 513 LIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSV 572
           L++ +P +   + +LS+IY+  G+     +VR+ + +RQ KK    S I ++  VH F  
Sbjct: 455 LLELDPLNDGYYVVLSNIYAEAGRWEDTARVRKFMKDRQVKKTPGWSSITVDGVVHEFVA 514

Query: 573 SDSLHPMRDVLYSVLEQLAGQM 594
            +  HP  + ++   E+L  +M
Sbjct: 515 GEESHPDTEQIFQRWEELLEEM 536



 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 101/393 (25%), Positives = 180/393 (45%), Gaps = 34/393 (8%)

Query: 13  KNLPNNCLIQSFLSLISKGQLS-EAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLG 71
           K  P   +  S L  +++G    +AI     L Q  +     T + +L+ C     L  G
Sbjct: 88  KQKPETFVWNSCLKALAEGDSPIDAIMLFYRLRQYDVCPDTFTCSSVLRACLNLLDLSNG 147

Query: 72  KRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYAN 131
           + +H  ++    ++   +L N ++ +Y  CG   +AR +F+K+P +++ ++N M++    
Sbjct: 148 RILHGVVEKVGFRS-NLYLQNMIVHLYASCGEMGEARLLFEKMPQRDVVTWNIMIAQLIK 206

Query: 132 LGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGI 191
            G  + A +LF  M ER+V SW +MI GY + G  +E +  +  +    + CNE +   +
Sbjct: 207 QGDHEGAYDLFSRMPERNVRSWTSMIAGYVQCGKAKEAIHLFAKMEEAGVKCNEVTVVAV 266

Query: 192 LTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDV 251
           L  C  L  L L  ++H      GF  NV IS++++D Y KCG L +A ++F+E + R V
Sbjct: 267 LAACADLGALDLGMRIHEYSNRHGFKRNVRISNTLIDMYVKCGCLEEACKVFEEMEERTV 326

Query: 252 LTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMIL 311
           ++W+ M+ G A  G  E A +LF++M +                               +
Sbjct: 327 VSWSAMIGGLAMHGRAEEALRLFSDMSQ-------------------------------V 355

Query: 312 RIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIV-MSSLIDMYSKCGCLND 370
            I PN  TF   L AC+ +  +  G++    + R       I     ++D+ S+ G L++
Sbjct: 356 GIEPNGVTFIGLLHACSHMGLISEGRRFFASMTRDYGIIPQIEHYGCMVDLLSRAGLLHE 415

Query: 371 GRQVFDLTDNKENSMLWNTMISALTQHGYDEQA 403
             +       K N ++W  ++ A   H   E A
Sbjct: 416 AHEFILNMPMKPNGVVWGALLGACRVHKNVEMA 448



 Score = 48.1 bits (113), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 37/158 (23%), Positives = 70/158 (44%), Gaps = 3/158 (1%)

Query: 337 KQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTD-NKENSMLWNTMISALT 395
           +QVH  +I+TN   + + ++ +  + +     +  +Q+F   +  K  + +WN+ + AL 
Sbjct: 45  RQVHAQIIKTNAPLSILPLTRVGLVCAFTPSFHYAQQIFKCVEKQKPETFVWNSCLKALA 104

Query: 396 QHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQ 455
           +      AI LF+ + +  V PD  T + +L AC +   +  G      +   +G   N 
Sbjct: 105 EGDSPIDAIMLFYRLRQYDVCPDTFTCSSVLRACLNLLDLSNG-RILHGVVEKVGFRSNL 163

Query: 456 EHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNAL 493
                ++ L A  G   +     EKMP + D   WN +
Sbjct: 164 YLQNMIVHLYASCGEMGEARLLFEKMP-QRDVVTWNIM 200


>gi|449435276|ref|XP_004135421.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Cucumis sativus]
 gi|449493520|ref|XP_004159329.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Cucumis sativus]
          Length = 743

 Score =  322 bits (826), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 183/590 (31%), Positives = 314/590 (53%), Gaps = 39/590 (6%)

Query: 14  NLPNNCLIQSFLSLIS----KGQLSEAISSLDLLAQRG-IRLPAETLAFILQQCAESKSL 68
           ++PN+ ++ S+ SL+S     G +SE++   +++ + G + L   T + +L   +    +
Sbjct: 96  SMPNHDVV-SWNSLLSGYAGNGLISESVRVYNMMLKDGSVNLNRITFSTMLILSSNRGFV 154

Query: 69  KLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSG 128
            LG+++H  +     ++   F+ + L+ MY K G   DA ++F++IP KN+  YN M++G
Sbjct: 155 DLGRQIHGQIFKFGYQS-YLFVGSPLVDMYAKTGFINDANRIFEEIPEKNIVVYNTMITG 213

Query: 129 YANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSF 188
                 +  A  LFDNM E+D +SW T+I G  ++G  +E +  +K +       ++F+F
Sbjct: 214 LLRCRFIVEAEQLFDNMPEKDSISWTTIITGLTQNGLFKEAVDKFKEMGIEGFCMDQFTF 273

Query: 189 AGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDA 248
             +LT C     L   +Q+H  ++ T +  N+ + S+++D Y KC               
Sbjct: 274 GSVLTACGGFLALDEGKQIHAYIIRTDYQDNIFVGSALLDMYCKC--------------- 318

Query: 249 RDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRM 308
           R+V                + A  +F +M  KN +SWT ++ GY +NG  ++A+ +F  M
Sbjct: 319 RNV----------------KYAEAVFRKMRHKNVISWTAMLVGYGQNGYSEEAVRIFCDM 362

Query: 309 MILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCL 368
               I P+  T  S + +CA++ SL+ G Q HG  + +       V ++LI +Y KCG L
Sbjct: 363 QRNEIHPDDFTLGSVISSCANLASLEEGAQFHGQALASGLICFVTVSNALITLYGKCGSL 422

Query: 369 NDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNA 428
               Q+F     ++  + W  ++S   Q G   + I LF  M+   + PD +T   +L+A
Sbjct: 423 EHAHQLFHEMKIRD-EVSWTALVSGYAQFGKANETISLFETMLAHGIVPDGVTFVGVLSA 481

Query: 429 CTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSY 488
           C+ +GLV++G  YFE M  +  I P  +H+ C+I+LL++AG  ++  N + +MP+  D+ 
Sbjct: 482 CSRAGLVEKGYHYFECMVKEHRITPIPDHYTCMIDLLSRAGRLEEAKNFINQMPFSPDAI 541

Query: 489 LWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLIN 548
            W  L   CR++GN+++G+   + L    PQ+ A++ LLSSIY+A GK   V K+R+ + 
Sbjct: 542 GWATLLSSCRLNGNLEIGKWAAESLHKLEPQNPASYILLSSIYAAKGKWDDVAKLRKGMR 601

Query: 549 ERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQMGEDA 598
           E   KKE   SWI+ +NKVH FS  D   P  D +Y+ LE L  +M E+ 
Sbjct: 602 EMGVKKEPGHSWIKYKNKVHIFSADDRSSPFSDQIYAKLESLYLKMIEEG 651



 Score =  291 bits (746), Expect = 5e-76,   Method: Compositional matrix adjust.
 Identities = 155/436 (35%), Positives = 251/436 (57%), Gaps = 5/436 (1%)

Query: 59  LQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKN 118
           L+ C E+++    K++H  + +     P TFL N+LI+ Y K G   +AR VFD IP  N
Sbjct: 12  LKFCCEARNRAQVKKLHCRI-IRTLTNPETFLYNNLINTYGKLGDLKNARNVFDHIPQPN 70

Query: 119 LFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYK-VLR 177
           LFS+N +LS Y+ LG ++  + +FD+M   DVVSWN+++ GYA +G + E ++ Y  +L+
Sbjct: 71  LFSWNTLLSAYSKLGYLQDMQRVFDSMPNHDVVSWNSLLSGYAGNGLISESVRVYNMMLK 130

Query: 178 RFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELS 237
             S++ N  +F+ +L +      + L RQ+HGQ+   G+ S + + S +VD YAK G ++
Sbjct: 131 DGSVNLNRITFSTMLILSSNRGFVDLGRQIHGQIFKFGYQSYLFVGSPLVDMYAKTGFIN 190

Query: 238 DARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGL 297
           DA R+F+E   ++++ + TM++G  +   +  A +LF+ MPEK+ +SWTT+I G T+NGL
Sbjct: 191 DANRIFEEIPEKNIVVYNTMITGLLRCRFIVEAEQLFDNMPEKDSISWTTIITGLTQNGL 250

Query: 298 GQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSS 357
            ++A++ F  M I     +Q TF S L AC   ++L  GKQ+H ++IRT+++ N  V S+
Sbjct: 251 FKEAVDKFKEMGIEGFCMDQFTFGSVLTACGGFLALDEGKQIHAYIIRTDYQDNIFVGSA 310

Query: 358 LIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKP 417
           L+DMY KC  +     VF    +K N + W  M+    Q+GY E+A+R+F DM R+ + P
Sbjct: 311 LLDMYCKCRNVKYAEAVFRKMRHK-NVISWTAMLVGYGQNGYSEEAVRIFCDMQRNEIHP 369

Query: 418 DKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQ 477
           D  TL  ++++C +   ++EG   F       G+I        LI L  + G  +     
Sbjct: 370 DDFTLGSVISSCANLASLEEG-AQFHGQALASGLICFVTVSNALITLYGKCGSLEHAHQL 428

Query: 478 LEKMPYEHDSYLWNAL 493
             +M    D   W AL
Sbjct: 429 FHEMKIR-DEVSWTAL 443



 Score =  138 bits (347), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 73/259 (28%), Positives = 145/259 (55%), Gaps = 6/259 (2%)

Query: 188 FAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETD 247
           +   L  C +       +++H +++ T       + +++++ Y K G+L +AR +FD   
Sbjct: 8   YTAALKFCCEARNRAQVKKLHCRIIRTLTNPETFLYNNLINTYGKLGDLKNARNVFDHIP 67

Query: 248 ARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTR 307
             ++ +W T++S Y+KLG ++   ++F+ MP  + VSW +L++GY  NGL  +++ ++  
Sbjct: 68  QPNLFSWNTLLSAYSKLGYLQDMQRVFDSMPNHDVVSWNSLLSGYAGNGLISESVRVYNM 127

Query: 308 MMI-LRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCG 366
           M+    +  N+ TFS+ L   ++   +  G+Q+HG + +  ++S   V S L+DMY+K G
Sbjct: 128 MLKDGSVNLNRITFSTMLILSSNRGFVDLGRQIHGQIFKFGYQSYLFVGSPLVDMYAKTG 187

Query: 367 CLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVIL 426
            +ND  ++F+    K N +++NTMI+ L +  +  +A +LF +M     + D I+   I+
Sbjct: 188 FINDANRIFEEIPEK-NIVVYNTMITGLLRCRFIVEAEQLFDNM----PEKDSISWTTII 242

Query: 427 NACTHSGLVQEGLTYFESM 445
              T +GL +E +  F+ M
Sbjct: 243 TGLTQNGLFKEAVDKFKEM 261


>gi|225425015|ref|XP_002267613.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930 [Vitis vinifera]
 gi|297738214|emb|CBI27415.3| unnamed protein product [Vitis vinifera]
          Length = 743

 Score =  322 bits (826), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 176/569 (30%), Positives = 303/569 (53%), Gaps = 34/569 (5%)

Query: 31  GQLSEAISSLDL-LAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTF 89
           G  S+A+    L L    + L   T + +L  C++ + + LG++++  + L        F
Sbjct: 116 GSCSDAVRVYKLMLKDAAMNLNRITFSTMLILCSKFRCVDLGRQINGQI-LKFGFGSDVF 174

Query: 90  LSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERD 149
           + + L+ MY K G   DA++ FD++P +N+   N M++G    GM++ ++ LF  + ERD
Sbjct: 175 VGSPLVDMYTKLGLIYDAKRYFDEMPERNVVMCNTMITGLMRCGMIEESQRLFCGLKERD 234

Query: 150 VVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHG 209
            +SW  MI G  ++G   E L  ++ +R    + ++F+F  +LT C  L  L   +Q+H 
Sbjct: 235 SISWTIMITGLMQNGLEREALDMFREMRLAGFAMDQFTFGSVLTACGSLLALGEGKQIHA 294

Query: 210 QVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMES 269
            V+ T    NV + S++VD Y+                               K   ++S
Sbjct: 295 YVIRTDHKDNVFVGSALVDMYS-------------------------------KCRSIKS 323

Query: 270 ASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACAS 329
           A  +F  MP+KN +SWT ++ GY +NG  ++A+++F  M    + P+  T  S + +CA+
Sbjct: 324 AETVFKRMPQKNVISWTAMLVGYGQNGFSEEAVKIFFEMQRNGVEPDDFTLGSVISSCAN 383

Query: 330 IVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNT 389
           + SL+ G Q H   + +   S   V ++LI +Y KCG   +  ++F    N  + + W  
Sbjct: 384 LASLEEGAQFHCRALVSGLISFITVSNALITLYGKCGSTENSHRLFTEM-NIRDEVSWTA 442

Query: 390 MISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDL 449
           +++   Q G   + I LF  M+   +KPD +T   +L+AC+ +GLV++GL YFESM  + 
Sbjct: 443 LLAGYAQFGKANETIGLFERMLAHGLKPDGVTFIGVLSACSRAGLVEKGLQYFESMIKEH 502

Query: 450 GIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKV 509
           GI+P  +H  C+I+LL +AG  ++  N +  MP   D   W  L   CR+HG++++G+  
Sbjct: 503 GIMPIVDHCTCIIDLLGRAGRLEEARNFINNMPCHPDVVGWATLLSSCRVHGDMEIGKWA 562

Query: 510 VDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHA 569
            D LI   PQ+ A++ LLSS+Y++ GK   V ++R+ + +++ +KE   SWI+ + KVH 
Sbjct: 563 ADSLIALEPQNPASYVLLSSLYASKGKWDKVAQLRRGMRDKRVRKEPGYSWIKYKGKVHV 622

Query: 570 FSVSDSLHPMRDVLYSVLEQLAGQMGEDA 598
           FS  D   P    +Y+ LE+L  +M E+ 
Sbjct: 623 FSADDQSSPFLGQIYAELEKLNYKMIEEG 651



 Score =  300 bits (767), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 161/439 (36%), Positives = 255/439 (58%), Gaps = 5/439 (1%)

Query: 56  AFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIP 115
           A +L+ C ES++    K++H  L L   K P TFLSN+LI+ Y+K G+   A  VFD IP
Sbjct: 9   ASLLKLCCESQNQTQAKKLHC-LILKTIKQPETFLSNNLITAYYKLGNLAYAHHVFDHIP 67

Query: 116 VKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKV 175
             NLFS+N +LS Y+ LG++   + +F+ M  RD VSWN  I GYA  G+  + ++ YK+
Sbjct: 68  QPNLFSWNTILSVYSKLGLLSQMQQIFNLMPFRDGVSWNLAISGYANYGSCSDAVRVYKL 127

Query: 176 -LRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCG 234
            L+  +++ N  +F+ +L +C K   + L RQ++GQ+L  GF S+V + S +VD Y K G
Sbjct: 128 MLKDAAMNLNRITFSTMLILCSKFRCVDLGRQINGQILKFGFGSDVFVGSPLVDMYTKLG 187

Query: 235 ELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTR 294
            + DA+R FDE   R+V+   TM++G  + G +E + +LF  + E++ +SWT +I G  +
Sbjct: 188 LIYDAKRYFDEMPERNVVMCNTMITGLMRCGMIEESQRLFCGLKERDSISWTIMITGLMQ 247

Query: 295 NGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIV 354
           NGL ++AL++F  M +     +Q TF S L AC S+++L  GKQ+H ++IRT+ + N  V
Sbjct: 248 NGLEREALDMFREMRLAGFAMDQFTFGSVLTACGSLLALGEGKQIHAYVIRTDHKDNVFV 307

Query: 355 MSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSS 414
            S+L+DMYSKC  +     VF     K N + W  M+    Q+G+ E+A+++F +M R+ 
Sbjct: 308 GSALVDMYSKCRSIKSAETVFKRMPQK-NVISWTAMLVGYGQNGFSEEAVKIFFEMQRNG 366

Query: 415 VKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQL 474
           V+PD  TL  ++++C +   ++EG   F       G+I        LI L  + G ++  
Sbjct: 367 VEPDDFTLGSVISSCANLASLEEG-AQFHCRALVSGLISFITVSNALITLYGKCGSTENS 425

Query: 475 MNQLEKMPYEHDSYLWNAL 493
                +M    D   W AL
Sbjct: 426 HRLFTEMNIR-DEVSWTAL 443



 Score =  131 bits (330), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 76/259 (29%), Positives = 139/259 (53%), Gaps = 6/259 (2%)

Query: 188 FAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETD 247
           +A +L +C + +     +++H  +L T       +S++++ AY K G L+ A  +FD   
Sbjct: 8   YASLLKLCCESQNQTQAKKLHCLILKTIKQPETFLSNNLITAYYKLGNLAYAHHVFDHIP 67

Query: 248 ARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTR 307
             ++ +W T++S Y+KLG +    ++FN MP ++ VSW   I+GY   G    A+ ++  
Sbjct: 68  QPNLFSWNTILSVYSKLGLLSQMQQIFNLMPFRDGVSWNLAISGYANYGSCSDAVRVYKL 127

Query: 308 MMI-LRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCG 366
           M+    +  N+ TFS+ L  C+    +  G+Q++G +++  F S+  V S L+DMY+K G
Sbjct: 128 MLKDAAMNLNRITFSTMLILCSKFRCVDLGRQINGQILKFGFGSDVFVGSPLVDMYTKLG 187

Query: 367 CLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVIL 426
            + D ++ FD    + N ++ NTMI+ L + G  E++ RLF  +       D I+  +++
Sbjct: 188 LIYDAKRYFDEMPER-NVVMCNTMITGLMRCGMIEESQRLFCGLKER----DSISWTIMI 242

Query: 427 NACTHSGLVQEGLTYFESM 445
                +GL +E L  F  M
Sbjct: 243 TGLMQNGLEREALDMFREM 261



 Score =  125 bits (315), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 88/376 (23%), Positives = 159/376 (42%), Gaps = 70/376 (18%)

Query: 27  LISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTP 86
           L+  G   EA+     +   G  +   T   +L  C    +L  GK++H ++  T  K  
Sbjct: 245 LMQNGLEREALDMFREMRLAGFAMDQFTFGSVLTACGSLLALGEGKQIHAYVIRTDHKD- 303

Query: 87  TTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMA 146
             F+ + L+ MY KC S   A  VF ++P KN+ S+  ML G                  
Sbjct: 304 NVFVGSALVDMYSKCRSIKSAETVFKRMPQKNVISWTAMLVG------------------ 345

Query: 147 ERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQ 206
                        Y ++G  EE +K +  ++R  +  ++F+   +++ C  L  L+   Q
Sbjct: 346 -------------YGQNGFSEEAVKIFFEMQRNGVEPDDFTLGSVISSCANLASLEEGAQ 392

Query: 207 VHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGD 266
            H + LV+G +S + +S++++  Y KCG   ++ RLF E + RD ++WT +++GYA+ G 
Sbjct: 393 FHCRALVSGLISFITVSNALITLYGKCGSTENSHRLFTEMNIRDEVSWTALLAGYAQFGK 452

Query: 267 MESASKLFNEM----PEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSS 322
                 LF  M     + + V++  +++  +R GL +K L+ F  M+       +H    
Sbjct: 453 ANETIGLFERMLAHGLKPDGVTFIGVLSACSRAGLVEKGLQYFESMI------KEHGIMP 506

Query: 323 CLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKE 382
            +  C  I                            ID+  + G L + R   +      
Sbjct: 507 IVDHCTCI----------------------------IDLLGRAGRLEEARNFINNMPCHP 538

Query: 383 NSMLWNTMISALTQHG 398
           + + W T++S+   HG
Sbjct: 539 DVVGWATLLSSCRVHG 554


>gi|125537719|gb|EAY84114.1| hypothetical protein OsI_05496 [Oryza sativa Indica Group]
          Length = 751

 Score =  322 bits (826), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 175/592 (29%), Positives = 308/592 (52%), Gaps = 35/592 (5%)

Query: 11  NRKNLPNNCLIQSFLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKL 70
            R  +  N LI  F S  S  +  +   +L  L +  +R    TL+ ++   +      L
Sbjct: 107 ERDAVSYNALITGFSSTGSPARSVQLYRAL--LREESVRPTRITLSAMIMVASALSDRAL 164

Query: 71  GKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYA 130
           G  VH  + L        F+ + L+ MY K G   DAR+VF ++  K +  YN +++G  
Sbjct: 165 GHSVHCQV-LRLGFGAYAFVGSPLVDMYAKMGLIRDARRVFQEMEAKTVVMYNTLITGLL 223

Query: 131 NLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAG 190
              M++ A+ LF  M +RD ++W TM+ G  ++G   E L  ++ +R   +  ++++F  
Sbjct: 224 RCKMIEDAKGLFQLMVDRDSITWTTMVTGLTQNGLQLEALDVFRRMRAEGVGIDQYTFGS 283

Query: 191 ILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARD 250
           ILT C  L   +  +Q+H  +  T +  NV + S++VD Y+KC  +    RL        
Sbjct: 284 ILTACGALAASEEGKQIHAYITRTWYEDNVFVGSALVDMYSKCRSI----RL-------- 331

Query: 251 VLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMI 310
                              A  +F  M  +N +SWT +I GY +N   ++A+  F+ M +
Sbjct: 332 -------------------AEAVFRRMTCRNIISWTAMIVGYGQNACSEEAVRAFSEMQM 372

Query: 311 LRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLND 370
             I+P+  T  S + +CA++ SL+ G Q H   + +       V ++L+ +Y KCG + D
Sbjct: 373 DGIKPDDFTLGSVISSCANLASLEEGAQFHCLALVSGLMRYITVSNALVTLYGKCGSIED 432

Query: 371 GRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACT 430
             ++FD   +  + + W  +++   Q G  ++ I LF  M+ + +KPD +T   +L+AC+
Sbjct: 433 AHRLFDEM-SFHDQVSWTALVTGYAQFGKAKETIDLFEKMLVNGLKPDGVTFIGVLSACS 491

Query: 431 HSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLW 490
            +GLV++G  YF+SM  D  I+P  +H+ C+I+L +++G   +    +++MP+  D++ W
Sbjct: 492 RAGLVEKGCDYFDSMQKDHDIVPIDDHYTCMIDLYSRSGRFKEAEEFIKQMPHSPDAFGW 551

Query: 491 NALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINER 550
             L   CR+ GN+++G+   + L++ +PQ+ A++ LL S+++A G+   V  +R+ + +R
Sbjct: 552 ATLLSSCRLRGNMEIGKWAAENLLETDPQNPASYVLLCSMHAAKGQWTEVAHLRRGMRDR 611

Query: 551 QFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQMGEDAPSLD 602
           Q KKE   SWI+ +NKVH FS  D  HP    +Y  LE L  +M E+    D
Sbjct: 612 QVKKEPGCSWIKYKNKVHIFSADDQSHPFSSRIYEKLEWLNSKMAEEGYKPD 663



 Score =  260 bits (665), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 140/427 (32%), Positives = 235/427 (55%), Gaps = 4/427 (0%)

Query: 68  LKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLS 127
           +++   VH  +  T  + P TFL NHL++ Y K G    AR+VFD++P  NLF+ N +LS
Sbjct: 28  VRVAGAVHCLILKTFLQAPPTFLLNHLLTAYAKSGRLARARRVFDEMPDPNLFTRNALLS 87

Query: 128 GYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYK-VLRRFSISCNEF 186
             A+  ++     LF +M ERD VS+N +I G++ +G+    ++ Y+ +LR  S+     
Sbjct: 88  ALAHSRLVPDMERLFASMPERDAVSYNALITGFSSTGSPARSVQLYRALLREESVRPTRI 147

Query: 187 SFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDET 246
           + + ++ +   L +  L   VH QVL  GF +   + S +VD YAK G + DARR+F E 
Sbjct: 148 TLSAMIMVASALSDRALGHSVHCQVLRLGFGAYAFVGSPLVDMYAKMGLIRDARRVFQEM 207

Query: 247 DARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFT 306
           +A+ V+ + T+++G  +   +E A  LF  M +++ ++WTT++ G T+NGL  +AL++F 
Sbjct: 208 EAKTVVMYNTLITGLLRCKMIEDAKGLFQLMVDRDSITWTTMVTGLTQNGLQLEALDVFR 267

Query: 307 RMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCG 366
           RM    +  +Q+TF S L AC ++ + + GKQ+H ++ RT +  N  V S+L+DMYSKC 
Sbjct: 268 RMRAEGVGIDQYTFGSILTACGALAASEEGKQIHAYITRTWYEDNVFVGSALVDMYSKCR 327

Query: 367 CLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVIL 426
            +     VF     + N + W  MI    Q+   E+A+R F +M    +KPD  TL  ++
Sbjct: 328 SIRLAEAVFRRMTCR-NIISWTAMIVGYGQNACSEEAVRAFSEMQMDGIKPDDFTLGSVI 386

Query: 427 NACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHD 486
           ++C +   ++EG   F  +    G++        L+ L  + G  +      ++M + HD
Sbjct: 387 SSCANLASLEEG-AQFHCLALVSGLMRYITVSNALVTLYGKCGSIEDAHRLFDEMSF-HD 444

Query: 487 SYLWNAL 493
              W AL
Sbjct: 445 QVSWTAL 451


>gi|326490792|dbj|BAJ90063.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 754

 Score =  322 bits (826), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 167/533 (31%), Positives = 288/533 (54%), Gaps = 33/533 (6%)

Query: 70  LGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGY 129
           LG++VH  + +        F  + L+ MY K G   DA++VFD++ VKN+  YN M++G 
Sbjct: 167 LGRQVHCQI-MRLGFGAYAFTWSPLVDMYAKMGLIGDAKRVFDEMVVKNVVMYNTMITGL 225

Query: 130 ANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFA 189
               M++ AR +F+ M +RD ++W TM+ G  ++G   E L  ++ +R   +  ++++F 
Sbjct: 226 LRCKMVEEARGVFEAMVDRDSITWTTMVTGLTQNGLQSEALDVFRRMRAEGVGIDQYTFG 285

Query: 190 GILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDAR 249
            ILT C  L   +  +Q+H   + T +  N+ + S++VD Y+KC  +    RL       
Sbjct: 286 SILTACGALAASEEGKQIHAYTIRTLYDGNIFVGSALVDMYSKCRSI----RL------- 334

Query: 250 DVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMM 309
                               A  +F  M  KN +SWT +I GY +NG G++A+ +F+ M 
Sbjct: 335 --------------------AEAVFRRMTCKNIISWTAMIVGYGQNGCGEEAVRVFSEMQ 374

Query: 310 ILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLN 369
              I+PN  T  S + +CA++ SL+ G Q H   + +  R    V S+L+ +Y KCG + 
Sbjct: 375 TDGIKPNDFTLGSVISSCANLASLEEGAQFHCMALVSGLRPYITVSSALVTLYGKCGSIE 434

Query: 370 DGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNAC 429
           D  ++FD      + + +  ++S   Q G  ++ I LF  M+   VKP+ +T   +L+AC
Sbjct: 435 DAHRLFDEMPF-HDQVSYTALVSGYAQFGKAKETIDLFEKMLLKGVKPNGVTFIGVLSAC 493

Query: 430 THSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYL 489
           + SGLV++G +YF SM  D GI+   +H+ C+I+L +++G   +    + +MP   D+  
Sbjct: 494 SRSGLVEKGCSYFHSMQQDHGIVLLDDHYTCMIDLYSRSGRLKEAEEFIRQMPRCPDAIG 553

Query: 490 WNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINE 549
           W  L   CR+ G++++G+   + L+  +PQ+ A++ LL S++++ G+   V  +R+ + +
Sbjct: 554 WATLLSACRLRGDMEIGKWAAENLLKTDPQNPASYVLLCSMHASKGEWSEVALLRRGMRD 613

Query: 550 RQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQMGEDAPSLD 602
           RQ KKE   SWI+ +N+VH FS  D  HP    +Y  L+ L  +M E+    D
Sbjct: 614 RQVKKEPGCSWIKYKNRVHIFSADDQSHPFSGTIYEKLQWLNSKMAEEGYKPD 666



 Score =  243 bits (621), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 138/427 (32%), Positives = 232/427 (54%), Gaps = 10/427 (2%)

Query: 74  VHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLG 133
           VH  +  T    P T++ NHL++ Y + G    AR++FD +P  NLF+ N +LS  A+  
Sbjct: 31  VHCLVLRTLPHPPPTYVLNHLLTAYARSGRLPLARRLFDAMPDPNLFTRNALLSALAHAR 90

Query: 134 MMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEG-------LKFYKVLRRFSISCNEF 186
           ++     LF +M +RD VS+N +I G++ +GA           L+   V+    +  +  
Sbjct: 91  LLPDMDRLFASMPQRDAVSYNALIAGFSGAGAPARAAGAYRALLREEAVVDGARVRPSRI 150

Query: 187 SFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDET 246
           + +G++     L +  L RQVH Q++  GF +     S +VD YAK G + DA+R+FDE 
Sbjct: 151 TMSGMVMAASALGDRALGRQVHCQIMRLGFGAYAFTWSPLVDMYAKMGLIGDAKRVFDEM 210

Query: 247 DARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFT 306
             ++V+ + TM++G  +   +E A  +F  M +++ ++WTT++ G T+NGL  +AL++F 
Sbjct: 211 VVKNVVMYNTMITGLLRCKMVEEARGVFEAMVDRDSITWTTMVTGLTQNGLQSEALDVFR 270

Query: 307 RMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCG 366
           RM    +  +Q+TF S L AC ++ + + GKQ+H + IRT +  N  V S+L+DMYSKC 
Sbjct: 271 RMRAEGVGIDQYTFGSILTACGALAASEEGKQIHAYTIRTLYDGNIFVGSALVDMYSKCR 330

Query: 367 CLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVIL 426
            +     VF     K N + W  MI    Q+G  E+A+R+F +M    +KP+  TL  ++
Sbjct: 331 SIRLAEAVFRRMTCK-NIISWTAMIVGYGQNGCGEEAVRVFSEMQTDGIKPNDFTLGSVI 389

Query: 427 NACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHD 486
           ++C +   ++EG   F  M    G+ P     + L+ L  + G  +      ++MP+ HD
Sbjct: 390 SSCANLASLEEG-AQFHCMALVSGLRPYITVSSALVTLYGKCGSIEDAHRLFDEMPF-HD 447

Query: 487 SYLWNAL 493
              + AL
Sbjct: 448 QVSYTAL 454



 Score =  125 bits (315), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 92/376 (24%), Positives = 158/376 (42%), Gaps = 70/376 (18%)

Query: 27  LISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTP 86
           L   G  SEA+     +   G+ +   T   IL  C    + + GK++H +   T     
Sbjct: 256 LTQNGLQSEALDVFRRMRAEGVGIDQYTFGSILTACGALAASEEGKQIHAYTIRTLYDG- 314

Query: 87  TTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMA 146
             F+ + L+ MY KC S   A  VF ++  KN+ S+  M+ G                  
Sbjct: 315 NIFVGSALVDMYSKCRSIRLAEAVFRRMTCKNIISWTAMIVG------------------ 356

Query: 147 ERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQ 206
                        Y ++G  EE ++ +  ++   I  N+F+   +++ C  L  L+   Q
Sbjct: 357 -------------YGQNGCGEEAVRVFSEMQTDGIKPNDFTLGSVISSCANLASLEEGAQ 403

Query: 207 VHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGD 266
            H   LV+G    + +SS++V  Y KCG + DA RLFDE    D +++T +VSGYA+ G 
Sbjct: 404 FHCMALVSGLRPYITVSSALVTLYGKCGSIEDAHRLFDEMPFHDQVSYTALVSGYAQFGK 463

Query: 267 MESASKLFNEMPEK----NPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSS 322
            +    LF +M  K    N V++  +++  +R+GL +K    F  M              
Sbjct: 464 AKETIDLFEKMLLKGVKPNGVTFIGVLSACSRSGLVEKGCSYFHSM-------------- 509

Query: 323 CLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKE 382
                         +Q HG ++  +        + +ID+YS+ G L +  +         
Sbjct: 510 --------------QQDHGIVLLDDH------YTCMIDLYSRSGRLKEAEEFIRQMPRCP 549

Query: 383 NSMLWNTMISALTQHG 398
           +++ W T++SA    G
Sbjct: 550 DAIGWATLLSACRLRG 565


>gi|147826737|emb|CAN70653.1| hypothetical protein VITISV_010023 [Vitis vinifera]
          Length = 1301

 Score =  322 bits (825), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 167/525 (31%), Positives = 295/525 (56%), Gaps = 40/525 (7%)

Query: 85  TPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDN 144
           T   +  N  I    + G+   AR+VFD++P ++  S+N++++GY   G    ++ LF  
Sbjct: 44  TQDVYAFNVQIGNLARAGNIGAARQVFDEMPHRDTVSWNSIITGYWKNGCFDESKRLFGL 103

Query: 145 MAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLT 204
           M  ++VVSWN+MI G  +   ++E  ++++ + +     N  S+  +++  V+ + ++  
Sbjct: 104 MPTKNVVSWNSMIAGCIEDERIDEAWQYFQAMPQR----NTASWNAMISGLVRYDRVEEA 159

Query: 205 RQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKL 264
            ++  ++       NV+  +++VD YAK GE+  AR LF+    ++V++WT M+SGY + 
Sbjct: 160 SRLFEEMP----RRNVISYTAMVDGYAKIGEIEQARALFNCMPQKNVVSWTVMISGYVEN 215

Query: 265 GDMESASKLFNEMPEKNPV-------------------------------SWTTLIAGYT 293
           G  + A  LF +MP+KN V                               SW  +I GY 
Sbjct: 216 GKFDEAENLFEQMPDKNIVAMTAMITGYCKEGKTDKAKILFDQIPCRDLASWNAMITGYA 275

Query: 294 RNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTI 353
           +NG G++AL+L ++M+ + ++P+  T  S L AC+S+ SL+ G++ H  ++++ + S   
Sbjct: 276 QNGSGEEALKLHSQMLKMGMQPDHSTLISVLTACSSLASLQEGRKTHVLVLKSGYESRIS 335

Query: 354 VMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRS 413
           + ++LI MY KCG + D    F   D+  + + WN MI+A  +HG+ ++A+  F +M  +
Sbjct: 336 ICNALITMYCKCGSILDSELAFRQIDHP-DVVSWNAMIAAFARHGFYDRALASFGEMRSN 394

Query: 414 SVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQ 473
            V+PD IT   +L+AC H+G V E L +F SM     I+   EH ACL+++L++ G  ++
Sbjct: 395 RVEPDGITFLSLLSACGHAGKVHESLNWFNSMIXSYKIVXRPEHFACLVDILSRGGQVEK 454

Query: 474 LMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSA 533
               +++MP+E D  +W AL   C +H N+ +G     ++++  PQ+S  + +LS+IY+A
Sbjct: 455 AYKIIQEMPFEADCGIWGALLAACHVHLNVKLGELAAKKIVELEPQNSGAYVVLSNIYAA 514

Query: 534 LGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHP 578
            G    V +VR L+ E+  KK+ A SW+EI+NKVH F   D+ HP
Sbjct: 515 AGMWGEVTRVRGLMREQGVKKQPAYSWMEIDNKVHFFLGDDASHP 559


>gi|296084001|emb|CBI24389.3| unnamed protein product [Vitis vinifera]
          Length = 665

 Score =  322 bits (825), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 166/503 (33%), Positives = 277/503 (55%), Gaps = 33/503 (6%)

Query: 91  SNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDV 150
           SN LIS Y K G   +A ++F+ +  +++ S+++M+ GY   G + HAR LF+ M ER+V
Sbjct: 162 SNALISGYLKVGRLEEATRIFEGMGERDVISWSSMVDGYCKKGKIGHARELFERMPERNV 221

Query: 151 VSWNTMIIGYAKSGAVEEGLKFYKVLRRFS-ISCNEFSFAGILTICVKLEELKLTRQVHG 209
           V+W  MI G+ K G  E G   +  +R+   +  N  +   +   C +  E K   Q+HG
Sbjct: 222 VTWTAMIDGHMKMGCYEVGFGLFLRMRKEGFVKVNPTTLTVMFEACSEFGEYKEGIQMHG 281

Query: 210 QVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFD------------------------- 244
            V   GF  +V + ++I+  Y +   + +AR++FD                         
Sbjct: 282 LVSRMGFEFDVFLGNAIIIMYCRFSFVVEARKIFDMMNRKDVVSWNALIAGYVQNDEVEE 341

Query: 245 ------ETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLG 298
                 +T  +DV++WTTM++G++  G M  + +LF  MP+++ ++WT +I+G+  NG  
Sbjct: 342 GYVLFEKTQQKDVISWTTMITGFSNKGKMGKSIELFRMMPKQDDIAWTAVISGFVGNGEY 401

Query: 299 QKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSL 358
           ++A+  F  M+   +RPN  T SS L A A + +L  G Q+H  +++     +  + +SL
Sbjct: 402 EEAIYWFIEMLRKVVRPNPLTLSSVLSASAGLATLNQGLQIHTLVVKMGMEFDLSIQNSL 461

Query: 359 IDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPD 418
           + MY+KCG + DG Q+F  + N  N + +N+MI+   Q+G+ E+A+ LFH M+    KP+
Sbjct: 462 VSMYTKCGNVADGHQIFT-SINSPNIVSFNSMITGFAQNGFGEEALELFHKMLNEGQKPN 520

Query: 419 KITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQL 478
           +IT   +L+ACTH GL+++G  YF+SM     I P   H+AC+++LL +AG  D  ++ +
Sbjct: 521 EITFLGVLSACTHVGLLEQGWNYFKSMKSLYQIEPGPHHYACIVDLLGRAGFLDDAIDLI 580

Query: 479 EKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGR 538
             MP E  S +W AL G  RIH  +D+ +    Q+    P ++A + +LS +YS+ G+ R
Sbjct: 581 RSMPCEPHSGVWGALLGASRIHLRLDVAKLAAQQIFKLEPDNAAPYAVLSFLYSSAGRNR 640

Query: 539 LVEKVRQLINERQFKKEQAISWI 561
             E+VR     +  KK    SWI
Sbjct: 641 DSEQVRMAQGLKGVKKSAGYSWI 663



 Score =  168 bits (426), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 126/482 (26%), Positives = 219/482 (45%), Gaps = 63/482 (13%)

Query: 81  TQRKTPTTFL--SNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHA 138
           TQ    T FL   +  I+ + + G   +A  +F ++P KN  S+  ML+ Y   G +  A
Sbjct: 22  TQGNRTTKFLVHCHSQITKHGRNGDLKEAESIFSRMPHKNAISWTAMLTAYYENGHIAKA 81

Query: 139 RNLFDNMAERDVVSWNTMIIGYAKSGA--VEEGLKFYKVLRRFSISCNEFSFAGILTICV 196
           R +F+ M +R   S+N MI  Y +S    + E  K +  +R      N  S+A ++T   
Sbjct: 82  RKMFEKMPQRTTASYNAMITAYTRSNPMMIGEASKLFAEMRE----RNSISYAAMITGLA 137

Query: 197 KL------EELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARD 250
           +       EEL L   V  +        + V S++++  Y K G L +A R+F+    RD
Sbjct: 138 RAGMVDNAEELYLETPVEWR--------DPVCSNALISGYLKVGRLEEATRIFEGMGERD 189

Query: 251 VLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMM- 309
           V++W++MV GY K G +  A +LF  MPE+N V+WT +I G+ + G  +    LF RM  
Sbjct: 190 VISWSSMVDGYCKKGKIGHARELFERMPERNVVTWTAMIDGHMKMGCYEVGFGLFLRMRK 249

Query: 310 --ILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGC 367
              +++ P   T +    AC+     K G Q+HG + R  F  +  + +++I MY +   
Sbjct: 250 EGFVKVNPT--TLTVMFEACSEFGEYKEGIQMHGLVSRMGFEFDVFLGNAIIIMYCRFSF 307

Query: 368 LNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFH------------------- 408
           + + R++FD+  N+++ + WN +I+   Q+   E+   LF                    
Sbjct: 308 VVEARKIFDMM-NRKDVVSWNALIAGYVQNDEVEEGYVLFEKTQQKDVISWTTMITGFSN 366

Query: 409 --------DMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHAC 460
                   ++ R   K D I    +++    +G  +E + +F  M   + + PN    + 
Sbjct: 367 KGKMGKSIELFRMMPKQDDIAWTAVISGFVGNGEYEEAIYWFIEMLRKV-VRPNPLTLSS 425

Query: 461 LIELLAQAGCSD-----QLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLID 515
           +  L A AG +      Q+   + KM  E D  + N+L  +    GN+  G ++   +  
Sbjct: 426 V--LSASAGLATLNQGLQIHTLVVKMGMEFDLSIQNSLVSMYTKCGNVADGHQIFTSINS 483

Query: 516 QN 517
            N
Sbjct: 484 PN 485



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 41/156 (26%), Positives = 75/156 (48%), Gaps = 7/156 (4%)

Query: 27  LISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVH-LHLKLTQRKT 85
            +  G+  EAI     + ++ +R    TL+ +L   A   +L  G ++H L +K+     
Sbjct: 395 FVGNGEYEEAIYWFIEMLRKVVRPNPLTLSSVLSASAGLATLNQGLQIHTLVVKMGMEFD 454

Query: 86  PTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNM 145
            +  + N L+SMY KCG+  D  ++F  I   N+ S+N+M++G+A  G  + A  LF  M
Sbjct: 455 LS--IQNSLVSMYTKCGNVADGHQIFTSINSPNIVSFNSMITGFAQNGFGEEALELFHKM 512

Query: 146 AERDVVSWNTMIIGYAKS----GAVEEGLKFYKVLR 177
                       +G   +    G +E+G  ++K ++
Sbjct: 513 LNEGQKPNEITFLGVLSACTHVGLLEQGWNYFKSMK 548


>gi|326504202|dbj|BAJ90933.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 634

 Score =  322 bits (825), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 181/576 (31%), Positives = 318/576 (55%), Gaps = 39/576 (6%)

Query: 18  NCLIQSFLSLISKGQLSEAISSLDLLAQRGIRLPAE-TLAFILQQCAESKSLKLGKRVHL 76
           N LI+++    + G   EA+     + +RGI LP E TL F+L+ C+ +++ +       
Sbjct: 76  NSLIRAY---SNSGCPQEALCLHRDVLRRGI-LPNEFTLPFVLKACSRARAAEHA----- 126

Query: 77  HLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMK 136
                        L+ H +++  K G             V+ +F  N +L   A+ G ++
Sbjct: 127 -------------LATHGVAI--KLGY------------VRQVFVGNALLHSSASAGSLR 159

Query: 137 HARNLFDNMA-ERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTIC 195
            +R LF  MA  R+VVSWNTMI G A++G   E    ++ +RR  +  + F+F  +L +C
Sbjct: 160 DSRRLFAEMAPHRNVVSWNTMIGGCAQAGETSEACALFREMRRQGVLADVFTFVSLLLVC 219

Query: 196 VKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWT 255
            K   L++ R VH  +L +G   ++++ +++VD Y KCG+L  A R FD    ++V++WT
Sbjct: 220 SKEGNLEVGRLVHCHMLASGSRVDLILGNALVDMYGKCGDLWMAHRCFDVMPIKNVVSWT 279

Query: 256 TMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRP 315
           +M+   AK G +++A   F +MPE+N +SW  +I+ Y + G   + L L+ RM  L + P
Sbjct: 280 SMLCALAKHGSVDAARDWFEQMPERNIISWNAMISCYVQGGRFPETLGLYNRMKSLGLTP 339

Query: 316 NQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVF 375
           ++ T +  L        L  G+ +H ++  +       V++SLIDMY++CG ++    +F
Sbjct: 340 DEVTLAGVLSVHGQNGDLASGRMIHCYIQDSFSDPGVTVLNSLIDMYARCGQVDTSISLF 399

Query: 376 DLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLV 435
               NK N++ WN +I AL  HG  ++A+  F  MV  +  PD+IT   +L+AC+H GL+
Sbjct: 400 TEMPNK-NTISWNVIIGALAMHGRAQEAVMFFRAMVSDAFSPDEITFVGLLSACSHGGLL 458

Query: 436 QEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHG 495
           ++G  YF++M H   + P  EH+AC+++LL + G   + ++ ++ MP + D  +W AL G
Sbjct: 459 EDGQYYFKAMRHIYNVKPEVEHYACMVDLLGRHGHLAKAVDLIKDMPMKPDVVVWGALIG 518

Query: 496 VCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKE 555
            CRIHG++++G+  + QL++    +     L+S++     +   ++++R+L+ +R  KK+
Sbjct: 519 ACRIHGHVEIGKLAIKQLLELEGINGGLFVLISNLLYETRQWEDMKRLRKLMRDRGTKKD 578

Query: 556 QAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLA 591
             +S IEI N +H F V D  H     +Y+ ++QLA
Sbjct: 579 MGVSSIEINNSIHEFGVEDIRHESSSQIYAAVDQLA 614



 Score =  142 bits (358), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 111/420 (26%), Positives = 185/420 (44%), Gaps = 70/420 (16%)

Query: 116 VKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKV 175
           V  L +    LSG A    + HAR +FD + + D  ++N++I  Y+ SG  +E L  ++ 
Sbjct: 38  VPQLVASYCALSGRAGDVALCHARRMFDRVPDPDRFAYNSLIRAYSNSGCPQEALCLHRD 97

Query: 176 LRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGE 235
           + R  I  NEF+   +L  C +    +     HG  +  G++  V + ++++ + A  G 
Sbjct: 98  VLRRGILPNEFTLPFVLKACSRARAAEHALATHGVAIKLGYVRQVFVGNALLHSSASAGS 157

Query: 236 LSDARRLFDE-TDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTR 294
           L D+RRLF E    R+V++W TM+ G A+ G+   A  LF EM                R
Sbjct: 158 LRDSRRLFAEMAPHRNVVSWNTMIGGCAQAGETSEACALFREM---------------RR 202

Query: 295 NGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIV 354
            G                +  +  TF S L  C+   +L+ G+ VH  ++ +  R + I+
Sbjct: 203 QG----------------VLADVFTFVSLLLVCSKEGNLEVGRLVHCHMLASGSRVDLIL 246

Query: 355 MSSLIDMYSKCGCLNDGRQVFDLTDNKE----NSML------------------------ 386
            ++L+DMY KCG L    + FD+   K      SML                        
Sbjct: 247 GNALVDMYGKCGDLWMAHRCFDVMPIKNVVSWTSMLCALAKHGSVDAARDWFEQMPERNI 306

Query: 387 --WNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGL---TY 441
             WN MIS   Q G   + + L++ M    + PD++TLA +L+    +G +  G     Y
Sbjct: 307 ISWNAMISCYVQGGRFPETLGLYNRMKSLGLTPDEVTLAGVLSVHGQNGDLASGRMIHCY 366

Query: 442 FESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHG 501
            +    D G+         LI++ A+ G  D  ++   +MP + ++  WN + G   +HG
Sbjct: 367 IQDSFSDPGVTVLNS----LIDMYARCGQVDTSISLFTEMPNK-NTISWNVIIGALAMHG 421



 Score = 92.0 bits (227), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 72/274 (26%), Positives = 124/274 (45%), Gaps = 22/274 (8%)

Query: 257 MVSGYAKL----GDME--SASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMI 310
           +V+ Y  L    GD+    A ++F+ +P+ +  ++ +LI  Y+ +G  Q+AL L   ++ 
Sbjct: 41  LVASYCALSGRAGDVALCHARRMFDRVPDPDRFAYNSLIRAYSNSGCPQEALCLHRDVLR 100

Query: 311 LRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLND 370
             I PN+ T    L AC+   + +H    HG  I+  +     V ++L+   +  G L D
Sbjct: 101 RGILPNEFTLPFVLKACSRARAAEHALATHGVAIKLGYVRQVFVGNALLHSSASAGSLRD 160

Query: 371 GRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACT 430
            R++F       N + WNTMI    Q G   +A  LF +M R  V  D  T   +L  C+
Sbjct: 161 SRRLFAEMAPHRNVVSWNTMIGGCAQAGETSEACALFREMRRQGVLADVFTFVSLLLVCS 220

Query: 431 HSGLVQEGLTYFESMTH-----DLGIIPNQEHHACLIELLAQAGCSDQLMNQ--LEKMPY 483
             G ++ G      M       DL I+ N      L+++  +  C D  M     + MP 
Sbjct: 221 KEGNLEVGRLVHCHMLASGSRVDL-ILGNA-----LVDMYGK--CGDLWMAHRCFDVMPI 272

Query: 484 EHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQN 517
           + +   W ++      HG++D  R   +Q+ ++N
Sbjct: 273 K-NVVSWTSMLCALAKHGSVDAARDWFEQMPERN 305


>gi|147832325|emb|CAN66581.1| hypothetical protein VITISV_030261 [Vitis vinifera]
          Length = 622

 Score =  322 bits (825), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 164/489 (33%), Positives = 268/489 (54%), Gaps = 5/489 (1%)

Query: 110 VFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEG 169
           + D+IP   L ++        N G + +AR +FD +   +   WNTMI GY+ S   EE 
Sbjct: 47  ILDEIPASKLLAF----CASPNSGSLAYARTVFDRIFRPNTFMWNTMIRGYSNSKEPEEA 102

Query: 170 LKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDA 229
           L  Y  +   S+  N ++F  +L  C  +   + T+Q+H  ++  GF S +  ++S+++ 
Sbjct: 103 LLLYHHMLYHSVPHNAYTFPFLLKACSSMSASEETQQIHAHIIKMGFGSEIYTTNSLLNV 162

Query: 230 YAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLI 289
           Y+K G++  AR LFD+ D RD ++W +M+ GY K G++E A ++FN MPE+N +SWT++I
Sbjct: 163 YSKSGDIKSARLLFDQVDQRDTVSWNSMIDGYTKCGEIEMAYEIFNHMPERNIISWTSMI 222

Query: 290 AGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFR 349
           +G    G  ++AL LF RM    I+ +     S L ACA +  L  GK +H ++ +    
Sbjct: 223 SGCVGAGKPKEALNLFHRMQTAGIKLDNVALVSTLQACADLGVLDQGKWIHAYIKKHEIE 282

Query: 350 SNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHD 409
            + I+   LIDMY+KCG L +  +VF   + K  S +W  MIS    HG   +A+  F  
Sbjct: 283 IDPILGCVLIDMYAKCGDLEEAIEVFRKMEEKGVS-VWTAMISGYAIHGRGREALEWFMK 341

Query: 410 MVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAG 469
           M  + V+P+++T   IL AC+H+GLV E    FESM    G  P+ EH+ C+++LL +AG
Sbjct: 342 MQTAGVEPNQMTFTGILTACSHAGLVHEAKLLFESMERIHGFKPSIEHYGCMVDLLGRAG 401

Query: 470 CSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSS 529
              +    +E MP + ++ +W AL   C IHGN+++G+++   LI  +P     +  L+S
Sbjct: 402 LLKEAEELIENMPVKPNAAIWGALLNACHIHGNLELGKQIGKILIQVDPGHGGRYIHLAS 461

Query: 530 IYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQ 589
           I++A G+     +VR+ + E+   K    S I +    H F   D  HP    +  +LEQ
Sbjct: 462 IHAAAGEWNQAARVRRQMKEQGVSKLPGCSVISVNGTAHEFLAGDESHPQIKEIDHMLEQ 521

Query: 590 LAGQMGEDA 598
           +  ++ E+ 
Sbjct: 522 IVERLREEG 530



 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 85/348 (24%), Positives = 165/348 (47%), Gaps = 33/348 (9%)

Query: 52  AETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVF 111
           A T  F+L+ C+   + +  +++H H+ +        + +N L+++Y K G    AR +F
Sbjct: 118 AYTFPFLLKACSSMSASEETQQIHAHI-IKMGFGSEIYTTNSLLNVYSKSGDIKSARLLF 176

Query: 112 DKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLK 171
           D++  ++  S+N+M+ GY   G ++ A  +F++M ER+++SW +MI G   +G  +E L 
Sbjct: 177 DQVDQRDTVSWNSMIDGYTKCGEIEMAYEIFNHMPERNIISWTSMISGCVGAGKPKEALN 236

Query: 172 FYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYA 231
            +  ++   I  +  +    L  C  L  L   + +H  +       + ++   ++D YA
Sbjct: 237 LFHRMQTAGIKLDNVALVSTLQACADLGVLDQGKWIHAYIKKHEIEIDPILGCVLIDMYA 296

Query: 232 KCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAG 291
           KCG+L +A  +F + + + V  WT M+SGYA                             
Sbjct: 297 KCGDLEEAIEVFRKMEEKGVSVWTAMISGYAI---------------------------- 328

Query: 292 YTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTN-FRS 350
              +G G++ALE F +M    + PNQ TF+  L AC+    +   K +   + R + F+ 
Sbjct: 329 ---HGRGREALEWFMKMQTAGVEPNQMTFTGILTACSHAGLVHEAKLLFESMERIHGFKP 385

Query: 351 NTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHG 398
           +      ++D+  + G L +  ++ +    K N+ +W  +++A   HG
Sbjct: 386 SIEHYGCMVDLLGRAGLLKEAEELIENMPVKPNAAIWGALLNACHIHG 433



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 99/391 (25%), Positives = 166/391 (42%), Gaps = 76/391 (19%)

Query: 191 ILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVD--AYAKCGELSDARRLFDETDA 248
           +L  C  +EEL   RQ+HGQ+L TG + + + +S ++   A    G L+ AR +FD    
Sbjct: 24  LLQRCSNMEEL---RQIHGQMLKTGLILDEIPASKLLAFCASPNSGSLAYARTVFDRIFR 80

Query: 249 RDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRM 308
            +   W TM+ GY+                 K P                ++AL L+  M
Sbjct: 81  PNTFMWNTMIRGYSN---------------SKEP----------------EEALLLYHHM 109

Query: 309 MILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCL 368
           +   +  N +TF   L AC+S+ + +  +Q+H  +I+  F S     +SL+++YSK G +
Sbjct: 110 LYHSVPHNAYTFPFLLKACSSMSASEETQQIHAHIIKMGFGSEIYTTNSLLNVYSKSGDI 169

Query: 369 NDGRQVFDLTDNKE----NSML--------------------------WNTMISALTQHG 398
              R +FD  D ++    NSM+                          W +MIS     G
Sbjct: 170 KSARLLFDQVDQRDTVSWNSMIDGYTKCGEIEMAYEIFNHMPERNIISWTSMISGCVGAG 229

Query: 399 YDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEG-LTYFESMTHDLGIIPNQEH 457
             ++A+ LFH M  + +K D + L   L AC   G++ +G   +     H++ I P    
Sbjct: 230 KPKEALNLFHRMQTAGIKLDNVALVSTLQACADLGVLDQGKWIHAYIKKHEIEIDPIL-- 287

Query: 458 HAC-LIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLID- 515
             C LI++ A+ G  ++ +    KM  E    +W A+     IHG    GR+ ++  +  
Sbjct: 288 -GCVLIDMYAKCGDLEEAIEVFRKME-EKGVSVWTAMISGYAIHGR---GREALEWFMKM 342

Query: 516 QNPQSSATHGLLSSIYSALGKGRLVEKVRQL 546
           Q           + I +A     LV + + L
Sbjct: 343 QTAGVEPNQMTFTGILTACSHAGLVHEAKLL 373



 Score = 66.2 bits (160), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 66/277 (23%), Positives = 118/277 (42%), Gaps = 43/277 (15%)

Query: 14  NLPNNCLIQSFLSLIS----KGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLK 69
           ++P   +I S+ S+IS     G+  EA++    +   GI+L    L   LQ CA+   L 
Sbjct: 209 HMPERNII-SWTSMISGCVGAGKPKEALNLFHRMQTAGIKLDNVALVSTLQACADLGVLD 267

Query: 70  LGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGY 129
            GK +H ++K  + +     L   LI MY KCG   +A +VF K+  K +  +  M+SGY
Sbjct: 268 QGKWIHAYIKKHEIEI-DPILGCVLIDMYAKCGDLEEAIEVFRKMEEKGVSVWTAMISGY 326

Query: 130 ANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFA 189
           A      H R                            E L+++  ++   +  N+ +F 
Sbjct: 327 A-----IHGRG--------------------------REALEWFMKMQTAGVEPNQMTFT 355

Query: 190 GILTICVK---LEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDET 246
           GILT C     + E KL  +   +  + GF  ++     +VD   + G L +A  L +  
Sbjct: 356 GILTACSHAGLVHEAKLLFESMER--IHGFKPSIEHYGCMVDLLGRAGLLKEAEELIENM 413

Query: 247 DAR-DVLTWTTMVSGYAKLGDMESASKLFNEMPEKNP 282
             + +   W  +++     G++E   ++   + + +P
Sbjct: 414 PVKPNAAIWGALLNACHIHGNLELGKQIGKILIQVDP 450


>gi|359479080|ref|XP_003632211.1| PREDICTED: pentatricopeptide repeat-containing protein At1g53600,
           mitochondrial [Vitis vinifera]
          Length = 744

 Score =  322 bits (825), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 166/503 (33%), Positives = 277/503 (55%), Gaps = 33/503 (6%)

Query: 91  SNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDV 150
           SN LIS Y K G   +A ++F+ +  +++ S+++M+ GY   G + HAR LF+ M ER+V
Sbjct: 241 SNALISGYLKVGRLEEATRIFEGMGERDVISWSSMVDGYCKKGKIGHARELFERMPERNV 300

Query: 151 VSWNTMIIGYAKSGAVEEGLKFYKVLRRFS-ISCNEFSFAGILTICVKLEELKLTRQVHG 209
           V+W  MI G+ K G  E G   +  +R+   +  N  +   +   C +  E K   Q+HG
Sbjct: 301 VTWTAMIDGHMKMGCYEVGFGLFLRMRKEGFVKVNPTTLTVMFEACSEFGEYKEGIQMHG 360

Query: 210 QVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFD------------------------- 244
            V   GF  +V + ++I+  Y +   + +AR++FD                         
Sbjct: 361 LVSRMGFEFDVFLGNAIIIMYCRFSFVVEARKIFDMMNRKDVVSWNALIAGYVQNDEVEE 420

Query: 245 ------ETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLG 298
                 +T  +DV++WTTM++G++  G M  + +LF  MP+++ ++WT +I+G+  NG  
Sbjct: 421 GYVLFEKTQQKDVISWTTMITGFSNKGKMGKSIELFRMMPKQDDIAWTAVISGFVGNGEY 480

Query: 299 QKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSL 358
           ++A+  F  M+   +RPN  T SS L A A + +L  G Q+H  +++     +  + +SL
Sbjct: 481 EEAIYWFIEMLRKVVRPNPLTLSSVLSASAGLATLNQGLQIHTLVVKMGMEFDLSIQNSL 540

Query: 359 IDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPD 418
           + MY+KCG + DG Q+F  + N  N + +N+MI+   Q+G+ E+A+ LFH M+    KP+
Sbjct: 541 VSMYTKCGNVADGHQIFT-SINSPNIVSFNSMITGFAQNGFGEEALELFHKMLNEGQKPN 599

Query: 419 KITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQL 478
           +IT   +L+ACTH GL+++G  YF+SM     I P   H+AC+++LL +AG  D  ++ +
Sbjct: 600 EITFLGVLSACTHVGLLEQGWNYFKSMKSLYQIEPGPHHYACIVDLLGRAGFLDDAIDLI 659

Query: 479 EKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGR 538
             MP E  S +W AL G  RIH  +D+ +    Q+    P ++A + +LS +YS+ G+ R
Sbjct: 660 RSMPCEPHSGVWGALLGASRIHLRLDVAKLAAQQIFKLEPDNAAPYAVLSFLYSSAGRNR 719

Query: 539 LVEKVRQLINERQFKKEQAISWI 561
             E+VR     +  KK    SWI
Sbjct: 720 DSEQVRMAQGLKGVKKSAGYSWI 742



 Score =  169 bits (427), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 132/506 (26%), Positives = 230/506 (45%), Gaps = 64/506 (12%)

Query: 58  ILQQCAESKSLKLGKRV-HLHLKLTQRKTPTTFL--SNHLISMYFKCGSDVDARKVFDKI 114
           +L   A+  +L L K +  L+   TQ    T FL   +  I+ + + G   +A  +F ++
Sbjct: 77  LLAMLAKPTTLLLQKHLSRLNSSNTQGNRTTKFLVHCHSQITKHGRNGDLKEAESIFSRM 136

Query: 115 PVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGA--VEEGLKF 172
           P KN  S+  ML+ Y   G +  AR +F+ M +R   S+N MI  Y +S    + E  K 
Sbjct: 137 PHKNAISWTAMLTAYYENGHIAKARKMFEKMPQRTTASYNAMITAYTRSNPMMIGEASKL 196

Query: 173 YKVLRRFSISCNEFSFAGILTICVKL------EELKLTRQVHGQVLVTGFLSNVVISSSI 226
           +  +R      N  S+A ++T   +       EEL L   V  +        + V S+++
Sbjct: 197 FAEMRE----RNSISYAAMITGLARAGMVDNAEELYLETPVEWR--------DPVCSNAL 244

Query: 227 VDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWT 286
           +  Y K G L +A R+F+    RDV++W++MV GY K G +  A +LF  MPE+N V+WT
Sbjct: 245 ISGYLKVGRLEEATRIFEGMGERDVISWSSMVDGYCKKGKIGHARELFERMPERNVVTWT 304

Query: 287 TLIAGYTRNGLGQKALELFTRMM---ILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFL 343
            +I G+ + G  +    LF RM     +++ P   T +    AC+     K G Q+HG +
Sbjct: 305 AMIDGHMKMGCYEVGFGLFLRMRKEGFVKVNPT--TLTVMFEACSEFGEYKEGIQMHGLV 362

Query: 344 IRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQA 403
            R  F  +  + +++I MY +   + + R++FD+  N+++ + WN +I+   Q+   E+ 
Sbjct: 363 SRMGFEFDVFLGNAIIIMYCRFSFVVEARKIFDMM-NRKDVVSWNALIAGYVQNDEVEEG 421

Query: 404 IRLFH---------------------------DMVRSSVKPDKITLAVILNACTHSGLVQ 436
             LF                            ++ R   K D I    +++    +G  +
Sbjct: 422 YVLFEKTQQKDVISWTTMITGFSNKGKMGKSIELFRMMPKQDDIAWTAVISGFVGNGEYE 481

Query: 437 EGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSD-----QLMNQLEKMPYEHDSYLWN 491
           E + +F  M   + + PN    + +  L A AG +      Q+   + KM  E D  + N
Sbjct: 482 EAIYWFIEMLRKV-VRPNPLTLSSV--LSASAGLATLNQGLQIHTLVVKMGMEFDLSIQN 538

Query: 492 ALHGVCRIHGNIDMGRKVVDQLIDQN 517
           +L  +    GN+  G ++   +   N
Sbjct: 539 SLVSMYTKCGNVADGHQIFTSINSPN 564



 Score = 59.7 bits (143), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 41/156 (26%), Positives = 75/156 (48%), Gaps = 7/156 (4%)

Query: 27  LISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVH-LHLKLTQRKT 85
            +  G+  EAI     + ++ +R    TL+ +L   A   +L  G ++H L +K+     
Sbjct: 474 FVGNGEYEEAIYWFIEMLRKVVRPNPLTLSSVLSASAGLATLNQGLQIHTLVVKMGMEFD 533

Query: 86  PTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNM 145
            +  + N L+SMY KCG+  D  ++F  I   N+ S+N+M++G+A  G  + A  LF  M
Sbjct: 534 LS--IQNSLVSMYTKCGNVADGHQIFTSINSPNIVSFNSMITGFAQNGFGEEALELFHKM 591

Query: 146 AERDVVSWNTMIIGYAKS----GAVEEGLKFYKVLR 177
                       +G   +    G +E+G  ++K ++
Sbjct: 592 LNEGQKPNEITFLGVLSACTHVGLLEQGWNYFKSMK 627


>gi|357510067|ref|XP_003625322.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355500337|gb|AES81540.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 1024

 Score =  322 bits (824), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 158/469 (33%), Positives = 268/469 (57%), Gaps = 2/469 (0%)

Query: 119 LFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRR 178
           L   N ++  YA  G++K+AR +FD  +++DVV+W TMI GYA     EE ++ ++++  
Sbjct: 292 LLVRNGLIHFYAERGLLKNARQVFDESSDKDVVTWTTMIDGYAAHDCSEEAMEVFELMLL 351

Query: 179 FSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSD 238
             +  NE +   +++ C  +  L++ ++VH +V       ++ + ++++D Y KC  L D
Sbjct: 352 SHVEPNEVTLIAVVSACSDMGNLEMGKRVHEKVEEKNMRCSLSLHNALLDMYVKCDCLVD 411

Query: 239 ARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLG 298
           AR LFD    +DV +WT+MV+GYAK GD+ESA + F++ P KN V W+ +IAGY++N   
Sbjct: 412 ARELFDRMATKDVYSWTSMVNGYAKCGDLESARRFFDQTPRKNAVCWSAMIAGYSQNNKP 471

Query: 299 QKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVM-SS 357
           +++L+LF  MM   + P +HT  S L AC  +  L  G  +H + +       ++ + ++
Sbjct: 472 KESLKLFHEMMERGVVPIEHTLVSVLSACGQLTCLNLGDWIHQYFVVGKIIPLSVTLENA 531

Query: 358 LIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKP 417
           ++DMY+KCG ++   +VF  T  + N + WNTMI+    +G  +QAI +F  M     +P
Sbjct: 532 IVDMYAKCGSIDAATEVFS-TMPERNLISWNTMIAGYAANGRAKQAINVFDQMRNMGFEP 590

Query: 418 DKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQ 477
           + IT   +L AC+H GL+ EG  YF++M    GI P + H+AC+++LL + G  ++    
Sbjct: 591 NNITFVSLLTACSHGGLISEGREYFDNMERKYGIKPERGHYACMVDLLGRTGLLEEAYKL 650

Query: 478 LEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKG 537
           +  MP +     W AL   CR+HGN+++ R     L+  +P+ S  + LL++  +   K 
Sbjct: 651 IANMPMQPCEAAWGALLNACRMHGNVELARLSAHNLLRLDPEDSGIYVLLANTCANDRKW 710

Query: 538 RLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSV 586
             V +VR L+ ++  KK    S IEI+     F V+D  HP  + +Y +
Sbjct: 711 SDVRRVRSLMKDKGVKKIPGYSLIEIDGGFVEFLVADESHPQSEEIYKL 759



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 102/400 (25%), Positives = 192/400 (48%), Gaps = 37/400 (9%)

Query: 35  EAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHL 94
           EA+   +L+    +     TL  ++  C++  +L++GKRVH  ++    +   + L N L
Sbjct: 341 EAMEVFELMLLSHVEPNEVTLIAVVSACSDMGNLEMGKRVHEKVEEKNMRCSLS-LHNAL 399

Query: 95  ISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWN 154
           + MY KC   VDAR++FD++  K+++S+ +M++GYA  G ++ AR  FD    ++ V W+
Sbjct: 400 LDMYVKCDCLVDARELFDRMATKDVYSWTSMVNGYAKCGDLESARRFFDQTPRKNAVCWS 459

Query: 155 TMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVT 214
            MI GY+++   +E LK +  +    +   E +   +L+ C +L  L L   +H   +V 
Sbjct: 460 AMIAGYSQNNKPKESLKLFHEMMERGVVPIEHTLVSVLSACGQLTCLNLGDWIHQYFVVG 519

Query: 215 GFLS-NVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKL 273
             +  +V + ++IVD YAKCG +  A  +F     R++++W TM++GYA           
Sbjct: 520 KIIPLSVTLENAIVDMYAKCGSIDAATEVFSTMPERNLISWNTMIAGYAA---------- 569

Query: 274 FNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSL 333
                                NG  ++A+ +F +M  +   PN  TF S L AC+    +
Sbjct: 570 ---------------------NGRAKQAINVFDQMRNMGFEPNNITFVSLLTACSHGGLI 608

Query: 334 KHGKQVHGFLIRT-NFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMIS 392
             G++    + R    +      + ++D+  + G L +  ++      +     W  +++
Sbjct: 609 SEGREYFDNMERKYGIKPERGHYACMVDLLGRTGLLEEAYKLIANMPMQPCEAAWGALLN 668

Query: 393 ALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVIL-NACTH 431
           A   HG  E A    H+++R  + P+   + V+L N C +
Sbjct: 669 ACRMHGNVELARLSAHNLLR--LDPEDSGIYVLLANTCAN 706



 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 109/471 (23%), Positives = 206/471 (43%), Gaps = 70/471 (14%)

Query: 114 IPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFY 173
            PV  + ++       A+ G + +A  +F+ + + +   WNTMI GY  +        F+
Sbjct: 190 FPVSRVIAF----CALAHSGDLHYAHTIFNRVEQPNTFMWNTMIRGYQNARKPIFAFSFF 245

Query: 174 KVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKC 233
             + +  +  +  SF   L  C + E +     V+  V   GF   +++ + ++  YA+ 
Sbjct: 246 VYMFQLRVEMDSRSFVFALKACQQFETVFEGESVYCVVWKMGFDCELLVRNGLIHFYAER 305

Query: 234 GELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYT 293
           G L +AR++FDE+  +DV+TWTTM+ GYA                               
Sbjct: 306 GLLKNARQVFDESSDKDVVTWTTMIDGYAA------------------------------ 335

Query: 294 RNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTI 353
            +   ++A+E+F  M++  + PN+ T  + + AC+ + +L+ GK+VH  +   N R +  
Sbjct: 336 -HDCSEEAMEVFELMLLSHVEPNEVTLIAVVSACSDMGNLEMGKRVHEKVEEKNMRCSLS 394

Query: 354 VMSSLIDMYSKCGCLNDGRQVFDLTDNKE------------------------------N 383
           + ++L+DMY KC CL D R++FD    K+                              N
Sbjct: 395 LHNALLDMYVKCDCLVDARELFDRMATKDVYSWTSMVNGYAKCGDLESARRFFDQTPRKN 454

Query: 384 SMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFE 443
           ++ W+ MI+  +Q+   +++++LFH+M+   V P + TL  +L+AC     +  G    +
Sbjct: 455 AVCWSAMIAGYSQNNKPKESLKLFHEMMERGVVPIEHTLVSVLSACGQLTCLNLGDWIHQ 514

Query: 444 SMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNI 503
                  I  +      ++++ A+ G  D        MP E +   WN +      +G  
Sbjct: 515 YFVVGKIIPLSVTLENAIVDMYAKCGSIDAATEVFSTMP-ERNLISWNTMIAGYAANGRA 573

Query: 504 DMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLIN--ERQF 552
                V DQ+  +N      +    S+ +A   G L+ + R+  +  ER++
Sbjct: 574 KQAINVFDQM--RNMGFEPNNITFVSLLTACSHGGLISEGREYFDNMERKY 622


>gi|225431281|ref|XP_002268784.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g44230-like [Vitis vinifera]
          Length = 647

 Score =  322 bits (824), Expect = 5e-85,   Method: Compositional matrix adjust.
 Identities = 160/464 (34%), Positives = 267/464 (57%), Gaps = 5/464 (1%)

Query: 131 NLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAG 190
           ++ M  + R +F  +   +   W  +I GYA  G   E +  Y  +RR  I    F+F  
Sbjct: 85  DVPMDPYPRLVFQQVEYPNPFLWTALIRGYALQGPFMESVLLYNSMRRQGIGPVSFTFTA 144

Query: 191 ILTICVKLEELKLTRQVHGQ-VLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDAR 249
           +L  C    ++ L RQVH Q +L+ GF S++ + ++++D Y KCG L    R+FDE   R
Sbjct: 145 LLKACSAALDVNLGRQVHTQTILIGGFGSDLYVGNTLIDMYVKCGCLGCGHRVFDEMLDR 204

Query: 250 DVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMM 309
           DV++WT+++  YAK+G+ME+AS+LF+ +P K+ V+WT ++ GY +N   ++ALE+F RM 
Sbjct: 205 DVISWTSLIVAYAKVGNMEAASELFDGLPMKDMVAWTAMVTGYAQNARPREALEVFERMQ 264

Query: 310 ILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNF--RSNTIVMSSLIDMYSKCGC 367
              ++ ++ T    + ACA + + K+   V     ++ F   SN +V S+LIDMY+KCG 
Sbjct: 265 AAGVKTDEVTLVGVISACAQLGAAKYANWVRDVAEQSGFGPTSNVVVGSALIDMYAKCGS 324

Query: 368 LNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILN 427
           + D  +VF+  + + N   +++MI     HG    A+ LF +M+++ +KP+++T   +L 
Sbjct: 325 VEDAYKVFERMEER-NVYSYSSMIVGFAMHGLAGAAMELFDEMLKTEIKPNRVTFIGVLT 383

Query: 428 ACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDS 487
           AC+H+G+V++G   F  M    G+ P+++H+AC+++LL +AG  ++ +N ++ MP     
Sbjct: 384 ACSHAGMVEQGQQLFAMMEECHGVAPSEDHYACMVDLLGRAGRLEEALNLVKMMPMNPHG 443

Query: 488 YLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLI 547
            +W AL G CRIHGN DM +     L +  P     + LLS+IY++ G+   V KVR+L+
Sbjct: 444 GVWGALLGACRIHGNPDMAQIAASHLFELEPNGIGNYILLSNIYASAGRWDDVSKVRKLM 503

Query: 548 NERQFKKEQAISWIEIENK-VHAFSVSDSLHPMRDVLYSVLEQL 590
             +  KK    SW+E +   +H F   D  HP    +   LE L
Sbjct: 504 RAKGLKKNPGCSWVEGKKGIIHEFFAGDMSHPKSREIKQALEDL 547



 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 99/408 (24%), Positives = 197/408 (48%), Gaps = 36/408 (8%)

Query: 1   MPSNFSPRGINRK-NLPNNCLIQSFLSLIS-KGQLSEAISSLDLLAQRGIRLPAETLAFI 58
           +P +  PR + ++   PN  L  + +   + +G   E++   + + ++GI   + T   +
Sbjct: 86  VPMDPYPRLVFQQVEYPNPFLWTALIRGYALQGPFMESVLLYNSMRRQGIGPVSFTFTAL 145

Query: 59  LQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKN 118
           L+ C+ +  + LG++VH    L        ++ N LI MY KCG      +VFD++  ++
Sbjct: 146 LKACSAALDVNLGRQVHTQTILIGGFGSDLYVGNTLIDMYVKCGCLGCGHRVFDEMLDRD 205

Query: 119 LFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRR 178
           + S+ +++  YA +G M+ A  LFD +  +D+V+W  M+ GYA++    E L+ ++ ++ 
Sbjct: 206 VISWTSLIVAYAKVGNMEAASELFDGLPMKDMVAWTAMVTGYAQNARPREALEVFERMQA 265

Query: 179 FSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGF--LSNVVISSSIVDAYAKCGEL 236
             +  +E +  G+++ C +L   K    V      +GF   SNVV+ S+++D YAKCG +
Sbjct: 266 AGVKTDEVTLVGVISACAQLGAAKYANWVRDVAEQSGFGPTSNVVVGSALIDMYAKCGSV 325

Query: 237 SDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNG 296
            DA ++F+  + R+V ++++M+ G+A  G                               
Sbjct: 326 EDAYKVFERMEERNVYSYSSMIVGFAMHG------------------------------- 354

Query: 297 LGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTN-FRSNTIVM 355
           L   A+ELF  M+   I+PN+ TF   L AC+    ++ G+Q+   +   +    +    
Sbjct: 355 LAGAAMELFDEMLKTEIKPNRVTFIGVLTACSHAGMVEQGQQLFAMMEECHGVAPSEDHY 414

Query: 356 SSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQA 403
           + ++D+  + G L +   +  +     +  +W  ++ A   HG  + A
Sbjct: 415 ACMVDLLGRAGRLEEALNLVKMMPMNPHGGVWGALLGACRIHGNPDMA 462


>gi|224129982|ref|XP_002320719.1| predicted protein [Populus trichocarpa]
 gi|222861492|gb|EEE99034.1| predicted protein [Populus trichocarpa]
          Length = 643

 Score =  322 bits (824), Expect = 5e-85,   Method: Compositional matrix adjust.
 Identities = 189/563 (33%), Positives = 300/563 (53%), Gaps = 49/563 (8%)

Query: 35  EAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHL 94
           EA+  + L+ + G      TL+ +L+ C+    +K G ++H  LK  +  +   FL N L
Sbjct: 110 EAMWLVSLMLENGAFADKFTLSLVLKACSRVGLVKEGMQIHGLLKKLEFGS-DLFLQNCL 168

Query: 95  ISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFD--NMAERDVVS 152
           IS Y KCG  V A +VFD++P ++  SYN+M+ GY   G +  AR +FD   + ER+++S
Sbjct: 169 ISFYVKCGCLVRASQVFDRMPKRDSVSYNSMIDGYVKGGRIDLARVVFDCIPLEERNLIS 228

Query: 153 WNTMIIGYAKS--GAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQ 210
           WN++I GYA+S  G +     F K+  R  IS N                          
Sbjct: 229 WNSLIRGYAQSEDGILVAWQLFAKMPERDLISWN-------------------------- 262

Query: 211 VLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESA 270
                         S++D   KCG + DA+ LFD    RD+++W  M+ GYAK G ++ A
Sbjct: 263 --------------SMIDGCVKCGRMEDAQGLFDRMPNRDIVSWANMIDGYAKNGRVDIA 308

Query: 271 SKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMI-LRIRPNQHTFSSCLCACAS 329
             LF+EMPE++ V++  ++ GY +NG   +AL +F  M        +  T    L A A 
Sbjct: 309 RSLFDEMPERDVVAYNAMMGGYVQNGYCMEALGIFYGMQSDGNFLLDNATLLIALSAIAQ 368

Query: 330 IVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSM-LWN 388
           +  +  G  +H F+    F  +  +  +LIDMYSKCG + +   VF+  + KE S+  WN
Sbjct: 369 LGHIDKGVAIHRFIEEIGFSLDGRLGVALIDMYSKCGSIENAMMVFE--NIKEKSVDHWN 426

Query: 389 TMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHD 448
            +I  L  HG  E A     +M R  V+PD IT   +LNAC H+GLV+EG+  FE M   
Sbjct: 427 AIIGGLAIHGLGELAFDFLMEMERMRVEPDDITFIGLLNACGHAGLVKEGMMCFELMRRV 486

Query: 449 LGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRK 508
             + P  +H+ C++++L +AG  ++  N +E+MP+E +  +W +L   C+ H + ++G+ 
Sbjct: 487 HKVEPKLQHYGCMVDILGRAGHIEEAKNFVEEMPFEPNDVIWRSLLSACKTHESFNVGQP 546

Query: 509 VVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVH 568
           V + L+  +  S +++ L S++Y+ LGK   V KVR ++ ++  KK    SWIE+E  V+
Sbjct: 547 VAENLMRLDSPSPSSYVLASNMYAGLGKWNDVRKVRAMMKQKNLKKIPGCSWIELEGHVY 606

Query: 569 AFSVSDSLHPMRDVLYSVLEQLA 591
           AF V D  HP    +YS+L+ L+
Sbjct: 607 AFFVQDKSHPQFSGIYSILDSLS 629



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 96/388 (24%), Positives = 183/388 (47%), Gaps = 27/388 (6%)

Query: 153 WNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVL 212
           WN +I  Y+     +E +    ++       ++F+ + +L  C ++  +K   Q+HG + 
Sbjct: 95  WNAIIKTYSHGHDPKEAMWLVSLMLENGAFADKFTLSLVLKACSRVGLVKEGMQIHGLLK 154

Query: 213 VTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASK 272
              F S++ + + ++  Y KCG L  A ++FD    RD +++ +M+ GY K G ++ A  
Sbjct: 155 KLEFGSDLFLQNCLISFYVKCGCLVRASQVFDRMPKRDSVSYNSMIDGYVKGGRIDLARV 214

Query: 273 LFNEMP--EKNPVSWTTLIAGYTRNGLG-QKALELFTRMMILRIRPNQH--TFSSCLCAC 327
           +F+ +P  E+N +SW +LI GY ++  G   A +LF +M      P +   +++S +  C
Sbjct: 215 VFDCIPLEERNLISWNSLIRGYAQSEDGILVAWQLFAKM------PERDLISWNSMIDGC 268

Query: 328 ASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLW 387
              V     +   G   R   R + +  +++ID Y+K G ++  R +FD    ++  + +
Sbjct: 269 ---VKCGRMEDAQGLFDRMPNR-DIVSWANMIDGYAKNGRVDIARSLFDEMPERD-VVAY 323

Query: 388 NTMISALTQHGYDEQAIRLFHDM-VRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMT 446
           N M+    Q+GY  +A+ +F+ M    +   D  TL + L+A    G + +G+       
Sbjct: 324 NAMMGGYVQNGYCMEALGIFYGMQSDGNFLLDNATLLIALSAIAQLGHIDKGVA-IHRFI 382

Query: 447 HDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMG 506
            ++G   +      LI++ ++ G  +  M   E +  E     WNA+ G   IHG   +G
Sbjct: 383 EEIGFSLDGRLGVALIDMYSKCGSIENAMMVFENIK-EKSVDHWNAIIGGLAIHG---LG 438

Query: 507 RKVVDQLIDQ-----NPQSSATHGLLSS 529
               D L++       P      GLL++
Sbjct: 439 ELAFDFLMEMERMRVEPDDITFIGLLNA 466



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 79/341 (23%), Positives = 138/341 (40%), Gaps = 68/341 (19%)

Query: 192 LTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAK---CGELSDARRLFDETDA 248
           L +  K + L    Q+H ++L TGF+ N  +++ I+ +++       +  AR +F    A
Sbjct: 19  LVLLKKCKRLSDINQIHARLLTTGFIKNTFLTTKIILSFSTSLHAPLIEFARFIFFRHHA 78

Query: 249 RDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRM 308
                                      E  EK+P  W  +I  Y+     ++A+ L + M
Sbjct: 79  --------------------FEFDEKEEEEEKDPFLWNAIIKTYSHGHDPKEAMWLVSLM 118

Query: 309 MILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCL 368
           +      ++ T S  L AC+ +  +K G Q+HG L +  F S+  + + LI  Y KCGCL
Sbjct: 119 LENGAFADKFTLSLVLKACSRVGLVKEGMQIHGLLKKLEFGSDLFLQNCLISFYVKCGCL 178

Query: 369 NDGRQVFDLTDNKE----NSML----------------------------WNTMISALTQ 396
               QVFD    ++    NSM+                            WN++I    Q
Sbjct: 179 VRASQVFDRMPKRDSVSYNSMIDGYVKGGRIDLARVVFDCIPLEERNLISWNSLIRGYAQ 238

Query: 397 HGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQE 456
               E  I +   +     + D I+   +++ C   G +++    F+ M       PN++
Sbjct: 239 ---SEDGILVAWQLFAKMPERDLISWNSMIDGCVKCGRMEDAQGLFDRM-------PNRD 288

Query: 457 --HHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHG 495
               A +I+  A+ G  D   +  ++MP E D   +NA+ G
Sbjct: 289 IVSWANMIDGYAKNGRVDIARSLFDEMP-ERDVVAYNAMMG 328


>gi|242063912|ref|XP_002453245.1| hypothetical protein SORBIDRAFT_04g002445 [Sorghum bicolor]
 gi|241933076|gb|EES06221.1| hypothetical protein SORBIDRAFT_04g002445 [Sorghum bicolor]
          Length = 603

 Score =  322 bits (824), Expect = 5e-85,   Method: Compositional matrix adjust.
 Identities = 178/540 (32%), Positives = 276/540 (51%), Gaps = 59/540 (10%)

Query: 94  LISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSW 153
           L++ Y +CG   +AR++FD++P +++ S+N M+SGY   GM+  AR+LFD M  R+ VSW
Sbjct: 61  LLTGYARCGRVAEARELFDRMPDRSVVSWNAMISGYLWNGMVDRARDLFDVMPARNDVSW 120

Query: 154 NTMIIGYAKSGAVEEGLKFYKVLRRFSIS-CNE--------------------------- 185
             MI GY K   V E  + +      + S CN                            
Sbjct: 121 LMMISGYMKRKRVREAREIFDRAPSPTTSVCNALLSGYAEHGYLKDAEDLFGRMQTPDLV 180

Query: 186 --------FSFAGILTICVKL-EELKLTRQVHGQVLVTGFLSN----------------- 219
                   ++ AG++ +  +L +E+     V    +V G+L N                 
Sbjct: 181 SWNAMITGYTRAGMMQVAQRLFDEMPEKDTVSWTAIVRGYLQNGDVDAAWKVFQDMPDRD 240

Query: 220 VVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPE 279
           V+  ++++  +     L DA RLF +   RD+++W T++ GY + GDM+ A+  F +MPE
Sbjct: 241 VLAWNTMMSGFVVSERLDDALRLFADMPDRDLVSWNTILQGYVQQGDMDGATAWFRKMPE 300

Query: 280 KNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQV 339
           K+  SW TLI+GY   G    AL L + M     RP+Q T+S  +  C+S+ +L  G+ V
Sbjct: 301 KDEASWNTLISGYKDEG----ALNLLSEMTQGGYRPDQATWSVAISICSSLAALGCGRMV 356

Query: 340 HGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGY 399
           H   I+T F  + +VMSSLI MYSKCG + +  QVFDL   ++ ++ WN MI+    HG 
Sbjct: 357 HVCTIKTGFERDALVMSSLISMYSKCGLITEASQVFDLIVQRD-TVTWNAMIATYAYHGL 415

Query: 400 DEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHA 459
             +A+ LF  M +    PD  T   +L+AC H G + EG  +F SM  D  +IP  +H++
Sbjct: 416 AAEALTLFDRMTKDGFSPDHATFLSVLSACAHKGYLYEGCHHFRSMQQDWNLIPRSDHYS 475

Query: 460 CLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQ 519
           C+++LL ++G   Q  N   ++P +     W  L   C  HG+I +G  V   ++   P 
Sbjct: 476 CMVDLLGRSGFVHQAYNFTRRIPSDLQINAWETLFSSCNAHGDIQLGELVAKNVLQSRPS 535

Query: 520 SSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPM 579
               + LLS+IY+A G       VR L+ E+  KKE   SWIE++  V +FS +D  HP+
Sbjct: 536 DGGMYTLLSNIYAAKGMWSSAASVRGLMKEQGLKKETGCSWIELKGDVVSFSSNDKAHPL 595



 Score =  172 bits (436), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 130/485 (26%), Positives = 229/485 (47%), Gaps = 39/485 (8%)

Query: 63  AESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSY 122
           A  ++ ++G    +  ++++R     F  N +IS   + G   DAR VFD +P +N  S+
Sbjct: 2   AHFRAGRVGAARRVFDEMSERNV---FTWNCMISGLVRNGMLTDARGVFDTMPFRNSVSW 58

Query: 123 NNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSIS 182
             +L+GYA  G +  AR LFD M +R VVSWN MI GY  +G V+     + V+     +
Sbjct: 59  AALLTGYARCGRVAEARELFDRMPDRSVVSWNAMISGYLWNGMVDRARDLFDVMP----A 114

Query: 183 CNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRL 242
            N+ S+  +++  +K + ++  R++  +           + ++++  YA+ G L DA  L
Sbjct: 115 RNDVSWLMMISGYMKRKRVREAREIFDRAPS----PTTSVCNALLSGYAEHGYLKDAEDL 170

Query: 243 FDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKAL 302
           F      D+++W  M++GY + G M+ A +LF+EMPEK+ VSWT ++ GY +NG    A 
Sbjct: 171 FGRMQTPDLVSWNAMITGYTRAGMMQVAQRLFDEMPEKDTVSWTAIVRGYLQNGDVDAAW 230

Query: 303 ELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMY 362
           ++F  M      P++   +        +VS +    +  F    +   + +  ++++  Y
Sbjct: 231 KVFQDM------PDRDVLAWNTMMSGFVVSERLDDALRLFADMPD--RDLVSWNTILQGY 282

Query: 363 SKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGY-DEQAIRLFHDMVRSSVKPDKIT 421
            + G ++     F     K+ +  WNT+IS     GY DE A+ L  +M +   +PD+ T
Sbjct: 283 VQQGDMDGATAWFRKMPEKDEAS-WNTLIS-----GYKDEGALNLLSEMTQGGYRPDQAT 336

Query: 422 LAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHA----CLIELLAQAGCSDQLMNQ 477
            +V ++ C+    +  G      M H   I    E  A     LI + ++ G   +  +Q
Sbjct: 337 WSVAISICSSLAALGCG-----RMVHVCTIKTGFERDALVMSSLISMYSKCGLITE-ASQ 390

Query: 478 LEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALG-K 536
           +  +  + D+  WNA+      HG       + D++       S  H    S+ SA   K
Sbjct: 391 VFDLIVQRDTVTWNAMIATYAYHGLAAEALTLFDRMTKDG--FSPDHATFLSVLSACAHK 448

Query: 537 GRLVE 541
           G L E
Sbjct: 449 GYLYE 453


>gi|356504050|ref|XP_003520812.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g05340-like [Glycine max]
          Length = 753

 Score =  322 bits (824), Expect = 5e-85,   Method: Compositional matrix adjust.
 Identities = 172/502 (34%), Positives = 278/502 (55%), Gaps = 32/502 (6%)

Query: 97  MYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTM 156
           MY KCG   DA K+FD +PVK+  S+N ++SG+         R +FD M ER+VV+W  +
Sbjct: 1   MYSKCGKLQDAIKLFDHMPVKDTVSWNAIISGFLRNRDCDTGRQVFDEMLERNVVTWTAV 60

Query: 157 IIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGF 216
           I G A++   E+GL+ +  +RR S+S N  ++   L  C  L+ L   R++HG +   G 
Sbjct: 61  ISGLAQNEFYEDGLRLFDQMRRGSVSPNSLTYLSALMACSGLQALLEGRKIHGLLWKLGM 120

Query: 217 LSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNE 276
            S++ I S+++D Y+KCG L                               E A ++F  
Sbjct: 121 QSDLCIESALMDLYSKCGSL-------------------------------EEAWEIFES 149

Query: 277 MPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHG 336
             E + VS T ++  + +NGL ++A+++F RM+ L I  + +  S+ L       SL  G
Sbjct: 150 AEELDDVSLTVILVAFMQNGLEEEAIQIFMRMVKLGIEVDPNMVSAILGVFGVGTSLTLG 209

Query: 337 KQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQ 396
           KQ+H  +I+ NF  N  V + LI+MYSKCG L D  QVF     K NS+ WN++I+A  +
Sbjct: 210 KQIHSLIIKKNFIQNLFVSNGLINMYSKCGDLYDSLQVFHEMTQK-NSVSWNSVIAAYAR 268

Query: 397 HGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQE 456
           +G   +A++ + DM    +    +T   +L+AC+H+GLV++G+ + ESMT D G+ P  E
Sbjct: 269 YGDGFRALQFYDDMRVEGIALTDVTFLSLLHACSHAGLVEKGMEFLESMTRDHGLSPRSE 328

Query: 457 HHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQ 516
           H+AC++++L +AG   +    +E +P      +W AL G C IHG+ +MG+   +QL   
Sbjct: 329 HYACVVDMLGRAGLLKEAKKFIEGLPENPGVLVWQALLGACSIHGDSEMGKYAANQLFLA 388

Query: 517 NPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSL 576
            P S A + L+++IYS+ GK +   +  + + E    KE  ISW+EIE KV++F V D +
Sbjct: 389 TPDSPAPYVLMANIYSSEGKWKERARSIKKMKEMGVAKEVGISWVEIEKKVNSFVVGDKM 448

Query: 577 HPMRDVLYSVLEQLAGQMGEDA 598
           HP  D ++ +L +L   + ++ 
Sbjct: 449 HPQADAIFWLLSRLLKHLKDEG 470



 Score = 89.4 bits (220), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 67/348 (19%), Positives = 149/348 (42%), Gaps = 72/348 (20%)

Query: 59  LQQCAESKSLKLGKRVH-LHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVK 117
           L  C+  ++L  G+++H L  KL  +      + + L+ +Y KCGS              
Sbjct: 96  LMACSGLQALLEGRKIHGLLWKLGMQSD--LCIESALMDLYSKCGS-------------- 139

Query: 118 NLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLR 177
                            ++ A  +F++  E D VS   +++ + ++G  EE ++ +  + 
Sbjct: 140 -----------------LEEAWEIFESAEELDDVSLTVILVAFMQNGLEEEAIQIFMRMV 182

Query: 178 RFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELS 237
           +  I  +    + IL +      L L +Q+H  ++   F+ N+ +S+ +++ Y+KCG+L 
Sbjct: 183 KLGIEVDPNMVSAILGVFGVGTSLTLGKQIHSLIIKKNFIQNLFVSNGLINMYSKCGDLY 242

Query: 238 DARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEK----NPVSWTTLIAGYT 293
           D+ ++F E   ++ ++W ++++ YA+ GD   A + +++M  +      V++ +L+   +
Sbjct: 243 DSLQVFHEMTQKNSVSWNSVIAAYARYGDGFRALQFYDDMRVEGIALTDVTFLSLLHACS 302

Query: 294 RNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTI 353
             GL +K +E    M                             + HG   R+       
Sbjct: 303 HAGLVEKGMEFLESM----------------------------TRDHGLSPRSEH----- 329

Query: 354 VMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDE 401
             + ++DM  + G L + ++  +        ++W  ++ A + HG  E
Sbjct: 330 -YACVVDMLGRAGLLKEAKKFIEGLPENPGVLVWQALLGACSIHGDSE 376



 Score = 69.3 bits (168), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 65/282 (23%), Positives = 123/282 (43%), Gaps = 45/282 (15%)

Query: 24  FLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQR 83
            ++ +  G   EAI     + + GI +    ++ IL       SL LGK++H  L + + 
Sbjct: 162 LVAFMQNGLEEEAIQIFMRMVKLGIEVDPNMVSAILGVFGVGTSLTLGKQIH-SLIIKKN 220

Query: 84  KTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFD 143
                F+SN LI+MY KCG   D+ +VF ++  KN  S+N++++ YA  G    A   +D
Sbjct: 221 FIQNLFVSNGLINMYSKCGDLYDSLQVFHEMTQKNSVSWNSVIAAYARYGDGFRALQFYD 280

Query: 144 NMAERDV----VSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLE 199
           +M    +    V++ +++   + +G VE+G++F + + R                    +
Sbjct: 281 DMRVEGIALTDVTFLSLLHACSHAGLVEKGMEFLESMTR--------------------D 320

Query: 200 ELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDE-TDARDVLTWTTMV 258
                R  H               + +VD   + G L +A++  +   +   VL W  ++
Sbjct: 321 HGLSPRSEH--------------YACVVDMLGRAGLLKEAKKFIEGLPENPGVLVWQALL 366

Query: 259 SGYAKLGDME----SASKLFNEMPEKNPVSWTTLIAGYTRNG 296
              +  GD E    +A++LF   P+ +P  +  +   Y+  G
Sbjct: 367 GACSIHGDSEMGKYAANQLFLATPD-SPAPYVLMANIYSSEG 407


>gi|297807711|ref|XP_002871739.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297317576|gb|EFH47998.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 850

 Score =  321 bits (823), Expect = 6e-85,   Method: Compositional matrix adjust.
 Identities = 186/584 (31%), Positives = 296/584 (50%), Gaps = 47/584 (8%)

Query: 18  NCLIQSFLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLH 77
           N +I+S+  L       E  S +    + G R    TL  +L  CA   +  LGK+ H  
Sbjct: 197 NSIIESYAKLGKPKMALEMFSKMT--NEFGFRPDDITLVNVLPPCASVGTRSLGKQFH-G 253

Query: 78  LKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKH 137
             +T       F+ N L+ MY K G   +A  VF  +PVK++ S+N M++GY+ +G  + 
Sbjct: 254 FAVTSEMIQNMFVGNCLVDMYAKFGMMDEANTVFSNMPVKDVVSWNAMVAGYSQIGRFED 313

Query: 138 ARNLFDNMAER----DVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILT 193
           A  LF+ M E     DVV+W+  I GYA+ G   E L   + +    I  NE +   +L+
Sbjct: 314 AVRLFEQMQEEKIKMDVVTWSAAISGYAQRGLGYEALGVCRQMLSSGIKPNEVTLISVLS 373

Query: 194 ICVKLEELKLTRQVHGQVLV-------TGFLSNVVISSSIVDAYAKCGELSDARRLFDET 246
            C  +  L   +++H   +         G     ++ + ++D YAKC ++  AR +FD  
Sbjct: 374 GCASVGALMHGKEIHCYAIKYPMDLRKNGHGDENMVINQLIDMYAKCKKVDIARAMFDSL 433

Query: 247 DARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFT 306
             +                             E++ V+WT +I GY+++G   KALEL +
Sbjct: 434 SPK-----------------------------ERDVVTWTVMIGGYSQHGDANKALELLS 464

Query: 307 RMM--ILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSS-LIDMYS 363
            M     + RPN  T S  L ACAS+ +L  GKQ+H + +R    +  + +S+ LIDMY+
Sbjct: 465 EMFEEDCQTRPNAFTISCALVACASLAALSIGKQIHAYALRNQQNAVPLFVSNCLIDMYA 524

Query: 364 KCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLA 423
           KCG + D R VFD    K N + W ++++    HGY E+A+ +F +M R   K D +TL 
Sbjct: 525 KCGDIGDARLVFDNMMEK-NEVTWTSLMTGYGMHGYGEEALGIFEEMRRIGFKLDGVTLL 583

Query: 424 VILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPY 483
           V+L AC+HSG++ +G+ YF  M  D G+ P  EH+ACL++LL +AG  +  +  +E+MP 
Sbjct: 584 VVLYACSHSGMIDQGMEYFNRMKTDFGVSPGPEHYACLVDLLGRAGRLNAALRLIEEMPM 643

Query: 484 EHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKV 543
           E    +W AL   CRIHG +++G     ++ +    +  ++ LLS++Y+  G+ + V ++
Sbjct: 644 EPPPVVWVALLSCCRIHGKVELGEYAAKKITELASNNDGSYTLLSNMYANAGRWKDVTRI 703

Query: 544 RQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVL 587
           R L+  +  KK    SW+E       F V D  HP    +Y VL
Sbjct: 704 RSLMRHKGIKKRPGCSWVEGIKGTTTFFVGDKTHPHAKEIYQVL 747



 Score =  208 bits (529), Expect = 9e-51,   Method: Compositional matrix adjust.
 Identities = 128/438 (29%), Positives = 218/438 (49%), Gaps = 51/438 (11%)

Query: 12  RKNLPNNCLIQSFLSLI----SKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKS 67
           R+  P++  +  + SLI    + G+ ++ +SS  L+          T  F+ + C E  S
Sbjct: 83  RRFPPSDAGVYHWNSLIRSYGNNGRANKCLSSFCLMHSLSWTPDNYTFPFVFKACGEISS 142

Query: 68  LKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLS 127
           ++ G   H   ++T   +   F+ N L++MY +C                          
Sbjct: 143 VRCGDSSHALSRVTGFMS-NVFVGNALVAMYSRC-------------------------- 175

Query: 128 GYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLK-FYKVLRRFSISCNEF 186
                G +  AR +FD M   DVVSWN++I  YAK G  +  L+ F K+   F    ++ 
Sbjct: 176 -----GSLSDARKVFDEMPVWDVVSWNSIIESYAKLGKPKMALEMFSKMTNEFGFRPDDI 230

Query: 187 SFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDET 246
           +   +L  C  +    L +Q HG  + +  + N+ + + +VD YAK G + +A  +F   
Sbjct: 231 TLVNVLPPCASVGTRSLGKQFHGFAVTSEMIQNMFVGNCLVDMYAKFGMMDEANTVFSNM 290

Query: 247 DARDVLTWTTMVSGYAKLGDMESASKLFNEMPEK----NPVSWTTLIAGYTRNGLGQKAL 302
             +DV++W  MV+GY+++G  E A +LF +M E+    + V+W+  I+GY + GLG +AL
Sbjct: 291 PVKDVVSWNAMVAGYSQIGRFEDAVRLFEQMQEEKIKMDVVTWSAAISGYAQRGLGYEAL 350

Query: 303 ELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIR--TNFRSN-----TIVM 355
            +  +M+   I+PN+ T  S L  CAS+ +L HGK++H + I+   + R N      +V+
Sbjct: 351 GVCRQMLSSGIKPNEVTLISVLSGCASVGALMHGKEIHCYAIKYPMDLRKNGHGDENMVI 410

Query: 356 SSLIDMYSKCGCLNDGRQVFDLTDNKENSML-WNTMISALTQHGYDEQAIRLFHDMVRSS 414
           + LIDMY+KC  ++  R +FD    KE  ++ W  MI   +QHG   +A+ L  +M    
Sbjct: 411 NQLIDMYAKCKKVDIARAMFDSLSPKERDVVTWTVMIGGYSQHGDANKALELLSEMFEED 470

Query: 415 --VKPDKITLAVILNACT 430
              +P+  T++  L AC 
Sbjct: 471 CQTRPNAFTISCALVACA 488



 Score =  172 bits (435), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 130/499 (26%), Positives = 224/499 (44%), Gaps = 67/499 (13%)

Query: 67  SLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYN--- 123
           +L+   + H HLK++   T    ++   I    KC +    + +  K+    + + N   
Sbjct: 7   TLRAAAKSHQHLKVSLFSTSALEITPPFIH---KCKTISQVKLIHQKLLSFGILTLNLTS 63

Query: 124 NMLSGYANLGMMKHARNLFDNMAERD--VVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSI 181
           +++S Y +LG + HA +L       D  V  WN++I  Y  +G   + L  + ++   S 
Sbjct: 64  HLISTYISLGCLSHAVSLLRRFPPSDAGVYHWNSLIRSYGNNGRANKCLSSFCLMHSLSW 123

Query: 182 SCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARR 241
           + + ++F  +   C ++  ++     H    VTGF+SNV + +++V  Y++CG LSDAR+
Sbjct: 124 TPDNYTFPFVFKACGEISSVRCGDSSHALSRVTGFMSNVFVGNALVAMYSRCGSLSDARK 183

Query: 242 LFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKA 301
           +FDE    DV++W +++  YAKLG  + A ++F++M                 N  G   
Sbjct: 184 VFDEMPVWDVVSWNSIIESYAKLGKPKMALEMFSKM----------------TNEFG--- 224

Query: 302 LELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDM 361
                       RP+  T  + L  CAS+ +   GKQ HGF + +    N  V + L+DM
Sbjct: 225 -----------FRPDDITLVNVLPPCASVGTRSLGKQFHGFAVTSEMIQNMFVGNCLVDM 273

Query: 362 YSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKIT 421
           Y+K G +++   VF     K+  + WN M++  +Q G  E A+RLF  M    +K D +T
Sbjct: 274 YAKFGMMDEANTVFSNMPVKD-VVSWNAMVAGYSQIGRFEDAVRLFEQMQEEKIKMDVVT 332

Query: 422 LAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKM 481
            +  ++     GL  E L     M    GI PN+     LI +L+       LM+  E  
Sbjct: 333 WSAAISGYAQRGLGYEALGVCRQMLSS-GIKPNE---VTLISVLSGCASVGALMHGKEIH 388

Query: 482 PYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVE 541
            Y     +    +G    HG+ +M   V++QLID                    K + V+
Sbjct: 389 CYAIKYPMDLRKNG----HGDENM---VINQLIDM-----------------YAKCKKVD 424

Query: 542 KVRQLINERQFKKEQAISW 560
             R + +    K+   ++W
Sbjct: 425 IARAMFDSLSPKERDVVTW 443


>gi|115463499|ref|NP_001055349.1| Os05g0370000 [Oryza sativa Japonica Group]
 gi|54287484|gb|AAV31228.1| unknown protein [Oryza sativa Japonica Group]
 gi|113578900|dbj|BAF17263.1| Os05g0370000 [Oryza sativa Japonica Group]
          Length = 664

 Score =  321 bits (823), Expect = 6e-85,   Method: Compositional matrix adjust.
 Identities = 170/525 (32%), Positives = 280/525 (53%), Gaps = 11/525 (2%)

Query: 88  TFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNM-- 145
            F+++ L+  Y + G+  DAR V D +P + +  ++ +++ +A+ G  + A  L + M  
Sbjct: 55  AFVASSLLHAYLRFGATADARSVLDGMPHRTVVGWSALIAAHASHGDAEGAWGLLERMRS 114

Query: 146 --AERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKL 203
              E +V++WN ++ G  +SG   + +     +       +    +  L+    + ++ +
Sbjct: 115 DGVEPNVITWNGLVSGLNRSGRARDAVLALVRMHGEGFLPDATGVSCALSAVGDVGDVAV 174

Query: 204 TRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAK 263
             Q+HG V+  G   +  ++++++D Y KCG   +  R+FDE+   DV +   +V+G ++
Sbjct: 175 GEQLHGYVVKAGCRLDACVATALIDMYGKCGRADEIVRVFDESSHMDVASCNALVAGLSR 234

Query: 264 LGDMESASKLFNEMP----EKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHT 319
              +  A +LF E      E N VSWT+++A   +NG   +A++LF  M    I PN  T
Sbjct: 235 NAQVSEALRLFREFVGRGIELNVVSWTSIVACCVQNGRDLEAVDLFREMQSEGIEPNSVT 294

Query: 320 FSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTD 379
               L A A+I +L HG+  H F +R  F  +  V S+L+DMY+KCG + D R +F+   
Sbjct: 295 IPCVLPAFANIAALMHGRSAHCFSLRKGFHHDIYVGSALVDMYAKCGRVRDARMIFEAMP 354

Query: 380 NKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGL 439
            + N + WN MI     HG  E A+RLF  M  S  KPD +T   +L AC+ +G  +EG 
Sbjct: 355 YR-NVVSWNAMIGGYAMHGEAENAVRLFRSMQSSKEKPDLVTFTCVLGACSQAGWTEEGR 413

Query: 440 TYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRI 499
           +YF  M H  GI P  EH+AC++ LL +AG  D   + + +MP+E D  +W +L G CR+
Sbjct: 414 SYFNEMQHKHGISPRMEHYACMVTLLGRAGKLDDAYDIINQMPFEPDGCIWGSLLGSCRV 473

Query: 500 HGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAIS 559
           HGN+ +     + L    P+++  + LLS+IY++      V ++R ++     KKE+  S
Sbjct: 474 HGNVVLAEVAAENLFQLEPENAGNYVLLSNIYASKKMWDGVNRLRDMMKTVGLKKEKGCS 533

Query: 560 WIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQMGE--DAPSLD 602
           WIEI+NKVH     DS HPM   +   L+ L  +M     APS D
Sbjct: 534 WIEIKNKVHMLLAGDSSHPMMAAITEKLKHLTMEMRRLGFAPSTD 578



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 90/382 (23%), Positives = 167/382 (43%), Gaps = 52/382 (13%)

Query: 215 GFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLF 274
           G   +  ++SS++ AY + G  +DAR + D    R V+ W+ +++ +A  GD E A  L 
Sbjct: 50  GVSRDAFVASSLLHAYLRFGATADARSVLDGMPHRTVVGWSALIAAHASHGDAEGAWGLL 109

Query: 275 NEMP----EKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASI 330
             M     E N ++W  L++G  R+G  + A+    RM      P+    S  L A   +
Sbjct: 110 ERMRSDGVEPNVITWNGLVSGLNRSGRARDAVLALVRMHGEGFLPDATGVSCALSAVGDV 169

Query: 331 VSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFD-------------- 376
             +  G+Q+HG++++   R +  V ++LIDMY KCG  ++  +VFD              
Sbjct: 170 GDVAVGEQLHGYVVKAGCRLDACVATALIDMYGKCGRADEIVRVFDESSHMDVASCNALV 229

Query: 377 --LTDNKE------------------NSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVK 416
             L+ N +                  N + W ++++   Q+G D +A+ LF +M    ++
Sbjct: 230 AGLSRNAQVSEALRLFREFVGRGIELNVVSWTSIVACCVQNGRDLEAVDLFREMQSEGIE 289

Query: 417 PDKITLAVILNACTHSGLVQEG-----LTYFESMTHDLGIIPNQEHHACLIELLAQAGCS 471
           P+ +T+  +L A  +   +  G      +  +   HD+ +       + L+++ A+ G  
Sbjct: 290 PNSVTIPCVLPAFANIAALMHGRSAHCFSLRKGFHHDIYV------GSALVDMYAKCGRV 343

Query: 472 DQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIY 531
                  E MPY  +   WNA+ G   +HG  +   ++   +  Q+ +        + + 
Sbjct: 344 RDARMIFEAMPYR-NVVSWNAMIGGYAMHGEAENAVRLFRSM--QSSKEKPDLVTFTCVL 400

Query: 532 SALGKGRLVEKVRQLINERQFK 553
            A  +    E+ R   NE Q K
Sbjct: 401 GACSQAGWTEEGRSYFNEMQHK 422


>gi|357466605|ref|XP_003603587.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355492635|gb|AES73838.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 568

 Score =  321 bits (823), Expect = 7e-85,   Method: Compositional matrix adjust.
 Identities = 169/475 (35%), Positives = 276/475 (58%), Gaps = 4/475 (0%)

Query: 120 FSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLK-FYKVLRR 178
           F    ML    NLG + +A  LF  +   ++ ++N +I  YA +      +  F ++L  
Sbjct: 43  FLVTKMLDSCDNLGHVSYATLLFKQLLHPNIFTYNAIIRTYAHNRHHSSAISVFVQMLTH 102

Query: 179 F--SISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGEL 236
              S+  ++F+F  ++  C  +   +L  QVHG V   G   + +  ++++D Y K G+L
Sbjct: 103 STNSVFPDKFTFPFVIKSCTGILCHRLGMQVHGLVYKFGADFHCITENALIDMYTKFGDL 162

Query: 237 SDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNG 296
           ++A ++F+E   RDV++W +++ GY KLG M SA +LF++MP +  VSWTT+I GY R G
Sbjct: 163 TNACKVFEEMSHRDVISWNSLIFGYVKLGQMNSARELFDDMPVRTIVSWTTMITGYGRMG 222

Query: 297 LGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMS 356
               AL++F  M ++ I P++ +  + L ACA + +L+ GK +H +  +  F   T + +
Sbjct: 223 CYGDALDVFREMQMVGIEPDEISIIAVLPACAQLGALEVGKWIHMYADKNGFLRKTGICN 282

Query: 357 SLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVK 416
           +LI+MY+KCGC+++   +FD    K+  + W+TMI  L  HG   +AI+LF +M +  V 
Sbjct: 283 ALIEMYAKCGCIDEAWNLFDQLVEKD-VISWSTMIGGLANHGKGYEAIQLFEEMCKVRVA 341

Query: 417 PDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMN 476
           P++IT   +L AC+H+GL  EGL YF+ M+    I P  EH+ CLI+LL ++GC  Q ++
Sbjct: 342 PNEITFLGVLLACSHTGLWDEGLKYFDVMSASYHIEPEIEHYGCLIDLLGRSGCLGQALD 401

Query: 477 QLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGK 536
            + KMP + DS +WN+L   CRIH N+ +    V QL++  P+ S  + LL+++Y+  GK
Sbjct: 402 TISKMPIKPDSRIWNSLLSSCRIHRNLQIAVIAVKQLMELEPEESGNYVLLANMYAEHGK 461

Query: 537 GRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLA 591
              V  +R+LI  ++ KK    S IE+ N V  F  SD   P    ++ +LE LA
Sbjct: 462 WEDVSNIRKLIRNKRIKKTPGSSSIEVNNVVQEFVSSDDSKPFSQEVFWILEGLA 516



 Score = 65.9 bits (159), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 43/152 (28%), Positives = 80/152 (52%), Gaps = 9/152 (5%)

Query: 31  GQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQ--RKTPTT 88
           G   +A+     +   GI     ++  +L  CA+  +L++GK +H++       RKT   
Sbjct: 222 GCYGDALDVFREMQMVGIEPDEISIIAVLPACAQLGALEVGKWIHMYADKNGFLRKTG-- 279

Query: 89  FLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAER 148
            + N LI MY KCG   +A  +FD++  K++ S++ M+ G AN G    A  LF+ M + 
Sbjct: 280 -ICNALIEMYAKCGCIDEAWNLFDQLVEKDVISWSTMIGGLANHGKGYEAIQLFEEMCKV 338

Query: 149 DV----VSWNTMIIGYAKSGAVEEGLKFYKVL 176
            V    +++  +++  + +G  +EGLK++ V+
Sbjct: 339 RVAPNEITFLGVLLACSHTGLWDEGLKYFDVM 370


>gi|357118938|ref|XP_003561204.1| PREDICTED: pentatricopeptide repeat-containing protein At2g35030,
           mitochondrial-like [Brachypodium distachyon]
          Length = 618

 Score =  321 bits (822), Expect = 7e-85,   Method: Compositional matrix adjust.
 Identities = 173/509 (33%), Positives = 284/509 (55%), Gaps = 13/509 (2%)

Query: 83  RKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLF 142
           R+   T+ +  L+S Y + G   +A  +F ++P +N+ S+N ML  Y + G +  A  LF
Sbjct: 95  RRNVVTWTA--LLSGYARAGRVDEAEALFGRMPERNVVSWNTMLEAYTSSGRVGDACTLF 152

Query: 143 DNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELK 202
           + M  RD  SWN ++    +SG +++  K +  +   ++       AGI       E   
Sbjct: 153 NGMPVRDAGSWNILLAALVRSGNIDKARKLFDRMPERNVMAWTTMVAGIARSGSVNE--- 209

Query: 203 LTRQVHGQVLVTGFLS-NVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGY 261
                  + L  G    NVV  ++++  YA+   + +A  LF +   RD+ +W  M++G+
Sbjct: 210 ------ARALFDGMPERNVVSWNAMISGYARNHMIDEAHDLFMKMPTRDIASWNIMITGF 263

Query: 262 AKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFS 321
            +  ++E A +LF++MP +N V+WTT++ GY ++   + AL+LF  M+I  IRPNQ TF 
Sbjct: 264 IQNKNLERAQELFDKMPRRNVVTWTTMMNGYLQSIQSETALQLFNGMLIDGIRPNQVTFL 323

Query: 322 SCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNK 381
             + AC+++  L  G+QVH  + +T F+ +T + S+L+++Y+KCG +   R+VF+L+  K
Sbjct: 324 GAVDACSNLAGLSEGQQVHQMICKTPFQFDTFIESTLMNLYAKCGEIILARKVFNLSKEK 383

Query: 382 ENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTY 441
           +  + WN MI+A   HG   +AI L+  M  +  KP+ +T   +L+AC+HSGLV EGL  
Sbjct: 384 D-VISWNGMIAAYAHHGVGLEAIHLYEKMQENGYKPNDVTYVGLLSACSHSGLVDEGLRI 442

Query: 442 FESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHG 501
           FE M  D  I    EH+ CLI+L ++AG        +  +  E  S +WNAL G C  HG
Sbjct: 443 FEYMVKDRSIAVRDEHYTCLIDLCSRAGRLGDAKRLIHFLKVEPSSTVWNALLGGCNSHG 502

Query: 502 NIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWI 561
           N  +G      L++  P ++ T+ LL +IY++ GK +   K+R  +N+R  KK+   SWI
Sbjct: 503 NESIGDLAARNLLEAEPNNAGTYTLLCNIYASAGKWKEAAKIRSEMNDRGLKKQPGCSWI 562

Query: 562 EIENKVHAFSVSDSLHPMRDVLYSVLEQL 590
           E+ NKVH F   D  H   D++ S+L+ +
Sbjct: 563 EVANKVHVFVSRDKSHSESDLINSLLQDI 591



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 90/376 (23%), Positives = 177/376 (47%), Gaps = 45/376 (11%)

Query: 26  SLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKT 85
           +L+  G + +A    D + +R +      +A I +  + +++  L   +     ++    
Sbjct: 169 ALVRSGNIDKARKLFDRMPERNVMAWTTMVAGIARSGSVNEARALFDGMPERNVVSWNAM 228

Query: 86  PTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNM 145
            + +  NH+I          +A  +F K+P +++ S+N M++G+     ++ A+ LFD M
Sbjct: 229 ISGYARNHMID---------EAHDLFMKMPTRDIASWNIMITGFIQNKNLERAQELFDKM 279

Query: 146 AERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTR 205
             R+VV+W TM+ GY +S   E  L+ +  +    I  N+ +F G +  C  L  L   +
Sbjct: 280 PRRNVVTWTTMMNGYLQSIQSETALQLFNGMLIDGIRPNQVTFLGAVDACSNLAGLSEGQ 339

Query: 206 QVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLG 265
           QVH  +  T F  +  I S++++ YAKCGE+  AR++F+ +  +DV++W  M++ YA   
Sbjct: 340 QVHQMICKTPFQFDTFIESTLMNLYAKCGEIILARKVFNLSKEKDVISWNGMIAAYA--- 396

Query: 266 DMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLC 325
                                        +G+G +A+ L+ +M     +PN  T+   L 
Sbjct: 397 ----------------------------HHGVGLEAIHLYEKMQENGYKPNDVTYVGLLS 428

Query: 326 ACASIVSLKHGKQVHGFLIRTNFRSNTIV---MSSLIDMYSKCGCLNDGRQVFDLTDNKE 382
           AC+    +  G ++  ++++   RS  +     + LID+ S+ G L D +++      + 
Sbjct: 429 ACSHSGLVDEGLRIFEYMVKD--RSIAVRDEHYTCLIDLCSRAGRLGDAKRLIHFLKVEP 486

Query: 383 NSMLWNTMISALTQHG 398
           +S +WN ++     HG
Sbjct: 487 SSTVWNALLGGCNSHG 502



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 97/394 (24%), Positives = 167/394 (42%), Gaps = 59/394 (14%)

Query: 123 NNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKV--LRRFS 180
           N  ++  A  G +  AR LFD   +RDVVSW  ++  YA  G + +    +     RR  
Sbjct: 39  NRRVAELAAAGRVSDARRLFDRTPDRDVVSWTALVAAYACQGMLHDARALFDRPDARR-- 96

Query: 181 ISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDAR 240
                                                 NVV  ++++  YA+ G + +A 
Sbjct: 97  --------------------------------------NVVTWTALLSGYARAGRVDEAE 118

Query: 241 RLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQK 300
            LF     R+V++W TM+  Y   G +  A  LFN MP ++  SW  L+A   R+G   K
Sbjct: 119 ALFGRMPERNVVSWNTMLEAYTSSGRVGDACTLFNGMPVRDAGSWNILLAALVRSGNIDK 178

Query: 301 ALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLID 360
           A +LF RM       N   +++ +   A   S+   + +   +       N +  +++I 
Sbjct: 179 ARKLFDRM----PERNVMAWTTMVAGIARSGSVNEARALFDGMP----ERNVVSWNAMIS 230

Query: 361 MYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKI 420
            Y++   +++   +F     ++ +  WN MI+   Q+   E+A  LF  M R +V    +
Sbjct: 231 GYARNHMIDEAHDLFMKMPTRDIAS-WNIMITGFIQNKNLERAQELFDKMPRRNV----V 285

Query: 421 TLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQ-AGCSD--QLMNQ 477
           T   ++N    S   +  L  F  M  D GI PNQ      ++  +  AG S+  Q+   
Sbjct: 286 TWTTMMNGYLQSIQSETALQLFNGMLID-GIRPNQVTFLGAVDACSNLAGLSEGQQVHQM 344

Query: 478 LEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVD 511
           + K P++ D+++ + L  +    G I + RKV +
Sbjct: 345 ICKTPFQFDTFIESTLMNLYAKCGEIILARKVFN 378



 Score = 69.3 bits (168), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 69/293 (23%), Positives = 129/293 (44%), Gaps = 24/293 (8%)

Query: 258 VSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQ 317
           V+  A  G +  A +LF+  P+++ VSWT L+A Y   G+   A  LF R      R N 
Sbjct: 42  VAELAAAGRVSDARRLFDRTPDRDVVSWTALVAAYACQGMLHDARALFDRP---DARRNV 98

Query: 318 HTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDL 377
            T+++ L   A    +   + + G +       N +  +++++ Y+  G + D   +F+ 
Sbjct: 99  VTWTALLSGYARAGRVDEAEALFGRMP----ERNVVSWNTMLEAYTSSGRVGDACTLFNG 154

Query: 378 TDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQE 437
              ++    WN +++AL + G  ++A +LF  M   +V    +    ++     SG V E
Sbjct: 155 MPVRDAGS-WNILLAALVRSGNIDKARKLFDRMPERNV----MAWTTMVAGIARSGSVNE 209

Query: 438 GLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVC 497
               F+ M     +  N      +I   A+    D+  +   KMP   D   WN +    
Sbjct: 210 ARALFDGMPERNVVSWN-----AMISGYARNHMIDEAHDLFMKMP-TRDIASWNIMITGF 263

Query: 498 RIHGNIDMGRKVVDQLIDQNPQSSAT--HGLLSSIYSA----LGKGRLVEKVR 544
             + N++  +++ D++  +N  +  T  +G L SI S     L  G L++ +R
Sbjct: 264 IQNKNLERAQELFDKMPRRNVVTWTTMMNGYLQSIQSETALQLFNGMLIDGIR 316


>gi|449481169|ref|XP_004156102.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Cucumis sativus]
          Length = 642

 Score =  321 bits (822), Expect = 8e-85,   Method: Compositional matrix adjust.
 Identities = 170/488 (34%), Positives = 271/488 (55%), Gaps = 14/488 (2%)

Query: 110 VFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEG 169
           +    PV    +  NML     LG   HA  L   +    +V  + M+  YA SG ++  
Sbjct: 70  ILSYAPVFQFLTGLNML----KLGHQVHAHMLLRGLQPTALVG-SKMVAFYASSGDIDSS 124

Query: 170 LKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDA 229
           +  +  +  +      F+F  +L   V+L  + + + VHG +L  G   ++ +++S++  
Sbjct: 125 VSVFNGIGDY------FTFPFVLKSSVELLSVWMGKCVHGLILRIGLQFDLYVATSLIIL 178

Query: 230 YAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLI 289
           Y KCGE++DA ++FD    RDV +W  +++GY K G +++A  +F  MP +N VSWTT+I
Sbjct: 179 YGKCGEINDAGKVFDNMTIRDVSSWNALLAGYTKSGCIDAALAIFERMPWRNIVSWTTMI 238

Query: 290 AGYTRNGLGQKALELFTRMMI--LRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTN 347
           +GY+++GL Q+AL LF  M+     +RPN  T  S L ACA + +L+ G+Q+H    R  
Sbjct: 239 SGYSQSGLAQQALSLFDEMVKEDSGVRPNWVTIMSVLPACAQLSTLERGRQIHELACRMG 298

Query: 348 FRSNTIVMSSLIDMYSKCGCLNDGRQVFD-LTDNKENSMLWNTMISALTQHGYDEQAIRL 406
             SN  V+ +L  MY+KCG L D R  FD L  N++N + WNTMI+A   +G+  QA+  
Sbjct: 299 LNSNASVLIALTAMYAKCGSLVDARNCFDKLNRNEKNLIAWNTMITAYASYGHGLQAVST 358

Query: 407 FHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLA 466
           F +M+++ ++PD IT   +L+ C+HSGLV  GL YF  M+    I P  EH+AC+ +LL 
Sbjct: 359 FREMIQAGIQPDDITFTGLLSGCSHSGLVDVGLKYFNHMSTTYSINPRVEHYACVADLLG 418

Query: 467 QAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGL 526
           +AG   +    + +MP      +W +L   CR H N++M      +L    P+++  + L
Sbjct: 419 RAGRLAEASKLVGEMPMPAGPSIWGSLLAACRKHRNLEMAETAARKLFVLEPENTGNYVL 478

Query: 527 LSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSV 586
           LS++Y+  G+ + V+K+R ++  +  KK    SWIEI  K H F   D+ HP    +Y  
Sbjct: 479 LSNMYAEAGRWQEVDKLRAIVKSQGTKKSPGCSWIEINGKAHMFLGGDTSHPQGKEIYMF 538

Query: 587 LEQLAGQM 594
           LE L  +M
Sbjct: 539 LEALPEKM 546



 Score =  143 bits (360), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 85/264 (32%), Positives = 141/264 (53%), Gaps = 11/264 (4%)

Query: 54  TLAFILQQCAESKSLKLGKRVH-LHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFD 112
           T  F+L+   E  S+ +GK VH L L++  +     +++  LI +Y KCG   DA KVFD
Sbjct: 136 TFPFVLKSSVELLSVWMGKCVHGLILRIGLQFD--LYVATSLIILYGKCGEINDAGKVFD 193

Query: 113 KIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKF 172
            + ++++ S+N +L+GY   G +  A  +F+ M  R++VSW TMI GY++SG  ++ L  
Sbjct: 194 NMTIRDVSSWNALLAGYTKSGCIDAALAIFERMPWRNIVSWTTMISGYSQSGLAQQALSL 253

Query: 173 YK--VLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAY 230
           +   V     +  N  +   +L  C +L  L+  RQ+H      G  SN  +  ++   Y
Sbjct: 254 FDEMVKEDSGVRPNWVTIMSVLPACAQLSTLERGRQIHELACRMGLNSNASVLIALTAMY 313

Query: 231 AKCGELSDARRLFDE--TDARDVLTWTTMVSGYAKLGDMESASKLFNEM----PEKNPVS 284
           AKCG L DAR  FD+   + ++++ W TM++ YA  G    A   F EM     + + ++
Sbjct: 314 AKCGSLVDARNCFDKLNRNEKNLIAWNTMITAYASYGHGLQAVSTFREMIQAGIQPDDIT 373

Query: 285 WTTLIAGYTRNGLGQKALELFTRM 308
           +T L++G + +GL    L+ F  M
Sbjct: 374 FTGLLSGCSHSGLVDVGLKYFNHM 397



 Score = 72.0 bits (175), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 51/166 (30%), Positives = 90/166 (54%), Gaps = 15/166 (9%)

Query: 21  IQSFLSLIS----KGQLSEAISSLDLLAQR--GIRLPAETLAFILQQCAESKSLKLGKRV 74
           I S+ ++IS     G   +A+S  D + +   G+R    T+  +L  CA+  +L+ G+++
Sbjct: 231 IVSWTTMISGYSQSGLAQQALSLFDEMVKEDSGVRPNWVTIMSVLPACAQLSTLERGRQI 290

Query: 75  H-LHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKI--PVKNLFSYNNMLSGYAN 131
           H L  ++      +  ++  L +MY KCGS VDAR  FDK+    KNL ++N M++ YA+
Sbjct: 291 HELACRMGLNSNASVLIA--LTAMYAKCGSLVDARNCFDKLNRNEKNLIAWNTMITAYAS 348

Query: 132 LGMMKHARNLFDNMAER----DVVSWNTMIIGYAKSGAVEEGLKFY 173
            G    A + F  M +     D +++  ++ G + SG V+ GLK++
Sbjct: 349 YGHGLQAVSTFREMIQAGIQPDDITFTGLLSGCSHSGLVDVGLKYF 394


>gi|359497567|ref|XP_002265980.2| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
           mitochondrial-like, partial [Vitis vinifera]
          Length = 599

 Score =  321 bits (822), Expect = 8e-85,   Method: Compositional matrix adjust.
 Identities = 174/517 (33%), Positives = 285/517 (55%), Gaps = 20/517 (3%)

Query: 84  KTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANL-GMMKHARNLF 142
           K+     SN +I+ + + G    A +VF+ + VK   ++N+ML+GY+N  G +K AR LF
Sbjct: 1   KSSNVISSNRVITNHIRSGDLNSALRVFESMTVKTTVTWNSMLAGYSNRRGKIKVARQLF 60

Query: 143 DNMAERDVVSWNTMIIGYAKSGAVEEGLKFY-----KVLRRFSISCNEFSFAGILTICVK 197
           D + E D+ S+N M+  Y  +  VE    F+     K    ++   + FS  G++    +
Sbjct: 61  DRIPEPDIFSYNIMLACYLHNADVESARLFFDQMPVKDTASWNTMISGFSQNGMMD---Q 117

Query: 198 LEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTM 257
             EL L   V           N V  ++++  Y + G+L  A++LF+    R V+ WT M
Sbjct: 118 ARELFLVMPVR----------NSVSWNAMISGYVESGDLDLAKQLFEVAPVRSVVAWTAM 167

Query: 258 VSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQ 317
           ++G+ K G +E A K F EMP KN V+W  +IAGY  N   +  L+LF RM+    RPN 
Sbjct: 168 ITGFMKFGKIELAEKYFEEMPMKNLVTWNAMIAGYIENCQAENGLKLFKRMVESGFRPNP 227

Query: 318 HTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDL 377
            + SS L  C+++ +LK GKQVH  + ++    N    +SL+ MY KCG L D  ++F L
Sbjct: 228 SSLSSVLLGCSNLSALKLGKQVHQLICKSPVSWNITAGTSLLSMYCKCGDLEDAWKLF-L 286

Query: 378 TDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQE 437
              +++ + WN MIS   QHG  E+A+ LF  M    +KPD IT   +L+AC H+G V  
Sbjct: 287 VMPQKDVVTWNAMISGYAQHGAGEKALYLFDKMRDEGMKPDWITFVAVLSACNHAGFVDL 346

Query: 438 GLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVC 497
           G+ YF SM  D G+    +H+ C+++LL + G   + ++ ++KMP++  S ++  L G C
Sbjct: 347 GIEYFNSMVRDYGVEAKPDHYTCVVDLLGRGGKLVEAVDLIKKMPFKPHSAIFGTLLGAC 406

Query: 498 RIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQA 557
           RIH N+++       L++ +P+S+A +  L+++Y+A+ +   V  VR+ + + +  K   
Sbjct: 407 RIHKNLELAEFAAKNLLNLDPESAAGYVQLANVYAAMNRWDHVAMVRRSMKDNKVIKTPG 466

Query: 558 ISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQM 594
            SWIE+++ VH F   D +HP    ++  L +L  +M
Sbjct: 467 YSWIEVKSVVHEFRSGDRIHPELAFIHEKLNELERKM 503



 Score = 70.5 bits (171), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 51/174 (29%), Positives = 88/174 (50%), Gaps = 15/174 (8%)

Query: 13  KNLPN-NCLIQSFLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLG 71
           KNL   N +I  +   I   Q    +     + + G R    +L+ +L  C+   +LKLG
Sbjct: 190 KNLVTWNAMIAGY---IENCQAENGLKLFKRMVESGFRPNPSSLSSVLLGCSNLSALKLG 246

Query: 72  KRVHLHLKLTQRKTPTTF---LSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSG 128
           K+VH  +     K+P ++       L+SMY KCG   DA K+F  +P K++ ++N M+SG
Sbjct: 247 KQVHQLIC----KSPVSWNITAGTSLLSMYCKCGDLEDAWKLFLVMPQKDVVTWNAMISG 302

Query: 129 YANLGMMKHARNLFDNMAER----DVVSWNTMIIGYAKSGAVEEGLKFYKVLRR 178
           YA  G  + A  LFD M +     D +++  ++     +G V+ G++++  + R
Sbjct: 303 YAQHGAGEKALYLFDKMRDEGMKPDWITFVAVLSACNHAGFVDLGIEYFNSMVR 356


>gi|449458231|ref|XP_004146851.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g17630-like [Cucumis sativus]
 gi|449522932|ref|XP_004168479.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g17630-like [Cucumis sativus]
          Length = 705

 Score =  321 bits (822), Expect = 9e-85,   Method: Compositional matrix adjust.
 Identities = 171/579 (29%), Positives = 316/579 (54%), Gaps = 18/579 (3%)

Query: 28  ISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPT 87
           +  G   EA+     +   G+     T   +L+  +   +  + K +H H+     +   
Sbjct: 115 VYHGYCIEALQLYGKMRNYGVLGDGFTFPLLLRASSNLGAFNMCKNLHCHVVQFGFQN-H 173

Query: 88  TFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNM-- 145
             + N LI MY K     DARKVFDK+ +K++ S+N M+SGYA    +  A  +F  M  
Sbjct: 174 LHVGNELIGMYAKLERMDDARKVFDKMRIKSVVSWNTMVSGYAYNYDVNGASRMFHQMEL 233

Query: 146 --AERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKL 203
              E + V+W +++  +A+ G +EE +  +  +R   +       A +L++C  L  L  
Sbjct: 234 EGVEPNPVTWTSLLSSHARCGHLEETMVLFCKMRMKGVGPTAEMLAVVLSVCADLATLNS 293

Query: 204 TRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAK 263
            + +HG ++  GF   +   ++++  Y K G + DA +LF E   +++++W  ++S +A+
Sbjct: 294 GQMIHGYMVKGGFNDYLFAKNALITLYGKGGGVGDAEKLFHEMKVKNLVSWNALISSFAE 353

Query: 264 LGDMESASKLFNEM------PEKNP--VSWTTLIAGYTRNGLGQKALELFTRMMILRIRP 315
            G  + A +L +++      PE  P  ++W+ +I G+   GLG+++LE+F +M +  ++ 
Sbjct: 354 SGVYDKALELLSQLEKMEAYPEMKPNVITWSAIICGFASKGLGEESLEVFRKMQLANVKA 413

Query: 316 NQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVF 375
           N  T +S L  CA + +L  G+++HG +IR     N +V + LI+MY+KCG    G  VF
Sbjct: 414 NSVTIASVLSICAMLAALNLGREMHGHVIRARMDDNVLVGNGLINMYTKCGSFKPGFMVF 473

Query: 376 DLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLV 435
           +  +N++ S+ WN+MI+    HG  + A+  F+ M++S  +PD +T    L+AC+H+GLV
Sbjct: 474 EKLENRD-SISWNSMIAGYGTHGLGKDALATFNHMIKSGYRPDGVTFIAALSACSHAGLV 532

Query: 436 QEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHG 495
            EG   F  M  +  I P  EH+AC+++LL +AG  ++  N ++ MP E ++Y+W++L  
Sbjct: 533 AEGHWLFSQMRQNFKIEPEIEHYACMVDLLGRAGLVEEASNIIKGMPMEPNAYIWSSLLN 592

Query: 496 VCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKE 555
            CR+H + D+  +   ++ + N + + +H LLS+I++A  +     +VR     +  KK 
Sbjct: 593 SCRMHKDTDLAEEAAAKISNLNSKITGSHMLLSNIFAASCRWEDSARVRISARAKGLKKV 652

Query: 556 QAISWIEIENKVHAF----SVSDSLHPMRDVLYSVLEQL 590
              SWIE++ KV+ F    ++S+ L  + ++L+ +  Q+
Sbjct: 653 PGWSWIEVKKKVYMFKAGYTISEGLEKVDEILHDLAFQI 691



 Score =  176 bits (445), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 109/396 (27%), Positives = 194/396 (48%), Gaps = 41/396 (10%)

Query: 58  ILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVK 117
           +L+QC     ++  K+VH    +T     + F+S  L+S+Y + G   DARKVF   P +
Sbjct: 44  LLRQC---NGIQHSKQVHSATVVTGAYC-SAFVSARLVSIYSRYGLVSDARKVFGSAPFE 99

Query: 118 NLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLR 177
               Y+N L                          WN++I      G   E L+ Y  +R
Sbjct: 100 ---CYSNFLL-------------------------WNSIIRANVYHGYCIEALQLYGKMR 131

Query: 178 RFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELS 237
            + +  + F+F  +L     L    + + +H  V+  GF +++ + + ++  YAK   + 
Sbjct: 132 NYGVLGDGFTFPLLLRASSNLGAFNMCKNLHCHVVQFGFQNHLHVGNELIGMYAKLERMD 191

Query: 238 DARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMP----EKNPVSWTTLIAGYT 293
           DAR++FD+   + V++W TMVSGYA   D+  AS++F++M     E NPV+WT+L++ + 
Sbjct: 192 DARKVFDKMRIKSVVSWNTMVSGYAYNYDVNGASRMFHQMELEGVEPNPVTWTSLLSSHA 251

Query: 294 RNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTI 353
           R G  ++ + LF +M +  + P     +  L  CA + +L  G+ +HG++++  F     
Sbjct: 252 RCGHLEETMVLFCKMRMKGVGPTAEMLAVVLSVCADLATLNSGQMIHGYMVKGGFNDYLF 311

Query: 354 VMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVR- 412
             ++LI +Y K G + D  ++F     K N + WN +IS+  + G  ++A+ L   + + 
Sbjct: 312 AKNALITLYGKGGGVGDAEKLFHEMKVK-NLVSWNALISSFAESGVYDKALELLSQLEKM 370

Query: 413 ---SSVKPDKITLAVILNACTHSGLVQEGLTYFESM 445
                +KP+ IT + I+      GL +E L  F  M
Sbjct: 371 EAYPEMKPNVITWSAIICGFASKGLGEESLEVFRKM 406



 Score = 88.6 bits (218), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 69/264 (26%), Positives = 125/264 (47%), Gaps = 32/264 (12%)

Query: 204 TRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAK 263
           ++QVH   +VTG   +  +S+ +V  Y++ G +SDAR++F                    
Sbjct: 54  SKQVHSATVVTGAYCSAFVSARLVSIYSRYGLVSDARKVFGSA----------------- 96

Query: 264 LGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSC 323
               E  S         N + W ++I     +G   +AL+L+ +M    +  +  TF   
Sbjct: 97  --PFECYS---------NFLLWNSIIRANVYHGYCIEALQLYGKMRNYGVLGDGFTFPLL 145

Query: 324 LCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKEN 383
           L A +++ +    K +H  +++  F+++  V + LI MY+K   ++D R+VFD    K +
Sbjct: 146 LRASSNLGAFNMCKNLHCHVVQFGFQNHLHVGNELIGMYAKLERMDDARKVFDKMRIK-S 204

Query: 384 SMLWNTMISALTQHGYD-EQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYF 442
            + WNTM+S    + YD   A R+FH M    V+P+ +T   +L++    G ++E +  F
Sbjct: 205 VVSWNTMVSGYA-YNYDVNGASRMFHQMELEGVEPNPVTWTSLLSSHARCGHLEETMVLF 263

Query: 443 ESMTHDLGIIPNQEHHACLIELLA 466
             M    G+ P  E  A ++ + A
Sbjct: 264 CKMRMK-GVGPTAEMLAVVLSVCA 286


>gi|357438957|ref|XP_003589755.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355478803|gb|AES60006.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 891

 Score =  321 bits (822), Expect = 9e-85,   Method: Compositional matrix adjust.
 Identities = 182/586 (31%), Positives = 325/586 (55%), Gaps = 23/586 (3%)

Query: 24  FLS-LISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQ 82
           F+S L  +G+++EA    D +++R   L    ++  ++    +++ KL  R         
Sbjct: 51  FISKLCREGKVNEARKVFDEMSKRDSCLWTTMISGYIKCGLINEARKLFDRPDAQ----- 105

Query: 83  RKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLF 142
               +  +   ++S Y K     +A ++F+++PV+N+ S+N M+ GYA  G  + A +LF
Sbjct: 106 ---KSVIVWTAMVSGYIKMNRIEEAERLFNEMPVRNVVSWNTMIDGYARNGRTQEALDLF 162

Query: 143 DNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELK 202
             M ER+VVSWNT++   A  G +++  + +  +R   +     S+  ++    K   + 
Sbjct: 163 GRMPERNVVSWNTVMTALAHCGRIDDAERLFNEMRERDV----VSWTTMVAGLSKNGRVD 218

Query: 203 LTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYA 262
             R+V  ++ +     NVV  ++++  YA+ G   +A +LF+    RD+ +W TMV+G+ 
Sbjct: 219 AAREVFDKMPI----RNVVSWNAMIAGYAQNGRFDEALKLFERMPERDMPSWNTMVTGFI 274

Query: 263 KLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILR-IRPNQHTFS 321
           + GD+  A +LF+ MP+KN ++WT ++ GY ++GL ++AL+LF +M     ++P   TF 
Sbjct: 275 QNGDLNRAEQLFHAMPQKNVITWTAMMTGYVQHGLSEEALKLFNKMQANDGLKPTTGTFV 334

Query: 322 SCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNK 381
           + L AC+ +  L  G+Q+H  + +T F+ +T V+S+LI+MYSKCG  +  +++FD  D  
Sbjct: 335 TVLGACSDLAGLPEGQQIHQMISKTVFQESTYVVSALINMYSKCGDFHVAKKMFD--DGL 392

Query: 382 ENSM---LWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEG 438
              M    WN MI+A   HGY  +AI LF+ M     + + +T   +L AC+H+GL  EG
Sbjct: 393 SGHMDLIAWNGMIAAYAHHGYGNEAINLFNKMQELGFQANDVTYVGLLTACSHAGLFDEG 452

Query: 439 LTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCR 498
             YF+ +  +  I   ++H+ CLI+L  +AG  D+ +N +E +  E    LW AL   C 
Sbjct: 453 FKYFDELLKNRYIQVREDHYTCLIDLCGRAGRLDEALNIIEGLGKEVSLSLWGALLAGCS 512

Query: 499 IHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAI 558
           +HGN D+G+ V D+++   P+++ T+ L S++Y+++G       VR  + ++  KK+   
Sbjct: 513 VHGNADIGKLVADKVLKMEPENADTYLLASNMYASVGMREEAANVRMKMKKKGLKKQPGC 572

Query: 559 SWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQMGEDAPSLDAD 604
           SWI++ N V  F V+D  H   ++L  +L  L  +M ++    D D
Sbjct: 573 SWIDVGNTVQVFVVNDKSHSQFEMLKYLLLDLHTKMKKNRDMSDDD 618


>gi|298204424|emb|CBI16904.3| unnamed protein product [Vitis vinifera]
          Length = 843

 Score =  320 bits (821), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 174/589 (29%), Positives = 306/589 (51%), Gaps = 84/589 (14%)

Query: 43  LAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCG 102
           + + G+ +   T A + + CA   +L+LG ++H H   T   T    +    + MY KC 
Sbjct: 266 MQKAGVGVSQSTFASVFRSCAGLSALRLGSQLHGHALKTDFGTDVV-IGTATLDMYMKCN 324

Query: 103 SDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAK 162
           +  DA+K+F+ +P  NL                                S+N +I+GYA+
Sbjct: 325 NLSDAQKLFNSLPNHNL-------------------------------QSYNAIIVGYAR 353

Query: 163 SGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVI 222
           S   ++GL             +E S +G    C  ++      QVHG  + +   SN+ +
Sbjct: 354 S---DKGLGL-----------DEVSLSGAFRACAVIKGDLEGLQVHGLSMKSLCQSNICV 399

Query: 223 SSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSG---------------------- 260
           +++I+D Y KCG L +A  +F+E  +RD ++W  +++                       
Sbjct: 400 ANAILDMYGKCGALVEACLVFEEMVSRDAVSWNAIIAAHEQNGNEEKTLSLFIHNRIIKS 459

Query: 261 ---------------YAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELF 305
                          Y+K G ME A KL + + E+  VSW  +I+G++     ++A + F
Sbjct: 460 RLGLDSFVGIALIDMYSKCGMMEKAEKLHDRLAEQTVVSWNAIISGFSLQKQSEEAQKTF 519

Query: 306 TRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKC 365
           ++M+ + + P+  T+++ L  CA++V+++ GKQ+H  +I+   +S+  + S+L+DMYSKC
Sbjct: 520 SKMLEMGVDPDNFTYATILDTCANLVTVELGKQIHAQIIKKELQSDAYISSTLVDMYSKC 579

Query: 366 GCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVI 425
           G + D + +F+   N++  + WN M+    QHG  E+A+++F  M   +VKP+  T   +
Sbjct: 580 GNMQDFQLIFEKAPNRD-FVTWNAMVCGYAQHGLGEEALKIFEYMQLENVKPNHATFLAV 638

Query: 426 LNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEH 485
           L AC H GLV++GL YF SM  + G+ P  EH++C+++++ ++G   + +  +E MP+E 
Sbjct: 639 LRACGHMGLVEKGLHYFHSMLSNYGLDPQLEHYSCVVDIMGRSGQVSKALELIEGMPFEA 698

Query: 486 DSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQ 545
           D+ +W  L  +C+IHGN+++  K    ++   P+ SA + LLS+IY+  G    V K+R+
Sbjct: 699 DAVIWRTLLSICKIHGNVEVAEKAAYSILQLEPEDSAAYVLLSNIYANAGMWNEVTKLRK 758

Query: 546 LINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQM 594
           ++     KKE   SWIEI+++VHAF V D  HP    +Y  L+ L  +M
Sbjct: 759 MMRFNGLKKEPGCSWIEIKSEVHAFLVGDKAHPRSKEIYENLDVLTDEM 807



 Score =  197 bits (502), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 115/339 (33%), Positives = 183/339 (53%), Gaps = 33/339 (9%)

Query: 53  ETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFD 112
           +T + I Q+C++ K+L  GK+ H  + LT+ K PT F++N LI MY KC     A KVFD
Sbjct: 43  KTFSHIFQECSDRKALCPGKQAHARMILTEFK-PTVFVTNCLIQMYIKCSDLEFAFKVFD 101

Query: 113 KIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKF 172
            +P ++  S+N ML GYA  G +  A+ LFD M ERDVVSWN++I GY  +G   + +  
Sbjct: 102 GMPQRDTVSWNAMLFGYAGRGDIGVAQKLFDAMPERDVVSWNSLISGYLHNGDHRKVIDV 161

Query: 173 YKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAK 232
           +  + R     +  +FA +L  C  LE+     Q+HG  +  GF  +VV  S+++D Y  
Sbjct: 162 FLQMGRMGTVFDRTTFAVVLKSCSSLEDHGGGIQIHGLAVKMGFDCDVVTGSALLDMY-- 219

Query: 233 CGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGY 292
                                        AK   ++ + + F+ MPEKN VSW+ +IAG 
Sbjct: 220 -----------------------------AKCKKLDCSIQFFHSMPEKNWVSWSAIIAGC 250

Query: 293 TRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNT 352
            +N   +  LELF  M    +  +Q TF+S   +CA + +L+ G Q+HG  ++T+F ++ 
Sbjct: 251 VQNDDLRGGLELFKEMQKAGVGVSQSTFASVFRSCAGLSALRLGSQLHGHALKTDFGTDV 310

Query: 353 IVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMI 391
           ++ ++ +DMY KC  L+D +++F+   N  N   +N +I
Sbjct: 311 VIGTATLDMYMKCNNLSDAQKLFNSLPN-HNLQSYNAII 348



 Score =  148 bits (374), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 76/244 (31%), Positives = 134/244 (54%), Gaps = 1/244 (0%)

Query: 187 SFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDET 246
           +F+ I   C   + L   +Q H ++++T F   V +++ ++  Y KC +L  A ++FD  
Sbjct: 44  TFSHIFQECSDRKALCPGKQAHARMILTEFKPTVFVTNCLIQMYIKCSDLEFAFKVFDGM 103

Query: 247 DARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFT 306
             RD ++W  M+ GYA  GD+  A KLF+ MPE++ VSW +LI+GY  NG  +K +++F 
Sbjct: 104 PQRDTVSWNAMLFGYAGRGDIGVAQKLFDAMPERDVVSWNSLISGYLHNGDHRKVIDVFL 163

Query: 307 RMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCG 366
           +M  +    ++ TF+  L +C+S+     G Q+HG  ++  F  + +  S+L+DMY+KC 
Sbjct: 164 QMGRMGTVFDRTTFAVVLKSCSSLEDHGGGIQIHGLAVKMGFDCDVVTGSALLDMYAKCK 223

Query: 367 CLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVIL 426
            L+   Q F     K N + W+ +I+   Q+      + LF +M ++ V   + T A + 
Sbjct: 224 KLDCSIQFFHSMPEK-NWVSWSAIIAGCVQNDDLRGGLELFKEMQKAGVGVSQSTFASVF 282

Query: 427 NACT 430
            +C 
Sbjct: 283 RSCA 286



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 113/476 (23%), Positives = 199/476 (41%), Gaps = 98/476 (20%)

Query: 125 MLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCN 184
           +L  YA    +  +   F +M E++ VSW+ +I G  ++  +  GL+ +K +++  +  +
Sbjct: 215 LLDMYAKCKKLDCSIQFFHSMPEKNWVSWSAIIAGCVQNDDLRGGLELFKEMQKAGVGVS 274

Query: 185 EFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFD 244
           + +FA +   C  L  L+L  Q+HG  L T F ++VVI ++ +D Y KC  LSDA++LF+
Sbjct: 275 QSTFASVFRSCAGLSALRLGSQLHGHALKTDFGTDVVIGTATLDMYMKCNNLSDAQKLFN 334

Query: 245 ETDARDVLTWTTMVSGYAK----------------------LGDMES------------- 269
                ++ ++  ++ GYA+                       GD+E              
Sbjct: 335 SLPNHNLQSYNAIIVGYARSDKGLGLDEVSLSGAFRACAVIKGDLEGLQVHGLSMKSLCQ 394

Query: 270 ---------------------ASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRM 308
                                A  +F EM  ++ VSW  +IA + +NG  +K L LF   
Sbjct: 395 SNICVANAILDMYGKCGALVEACLVFEEMVSRDAVSWNAIIAAHEQNGNEEKTLSLF--- 451

Query: 309 MILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCL 368
                                         +H  +I++    ++ V  +LIDMYSKCG +
Sbjct: 452 ------------------------------IHNRIIKSRLGLDSFVGIALIDMYSKCGMM 481

Query: 369 NDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNA 428
               ++ D    ++  + WN +IS  +     E+A + F  M+   V PD  T A IL+ 
Sbjct: 482 EKAEKLHDRL-AEQTVVSWNAIISGFSLQKQSEEAQKTFSKMLEMGVDPDNFTYATILDT 540

Query: 429 CTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSY 488
           C +   V+ G      +     +  +    + L+++ ++ G         EK P   D  
Sbjct: 541 CANLVTVELGKQIHAQIIKK-ELQSDAYISSTLVDMYSKCGNMQDFQLIFEKAP-NRDFV 598

Query: 489 LWNALHGVCRI--HGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEK 542
            WNA+  VC    HG  +   K+ + +  +N + +  H    ++  A G   LVEK
Sbjct: 599 TWNAM--VCGYAQHGLGEEALKIFEYMQLENVKPN--HATFLAVLRACGHMGLVEK 650



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 72/323 (22%), Positives = 132/323 (40%), Gaps = 58/323 (17%)

Query: 32  QLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLS 91
           Q  EA  +   + + G+     T A IL  CA   +++LGK++H  + + +      ++S
Sbjct: 511 QSEEAQKTFSKMLEMGVDPDNFTYATILDTCANLVTVELGKQIHAQI-IKKELQSDAYIS 569

Query: 92  NHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVV 151
           + L+ MY KCG+  D + +F+K P ++  ++N M+ GYA  G+ + A  +F+ M   +V 
Sbjct: 570 STLVDMYSKCGNMQDFQLIFEKAPNRDFVTWNAMVCGYAQHGLGEEALKIFEYMQLENVK 629

Query: 152 SWNTMIIGYAKS----GAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQV 207
             +   +   ++    G VE+GL ++                                  
Sbjct: 630 PNHATFLAVLRACGHMGLVEKGLHYF---------------------------------- 655

Query: 208 HGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDAR-DVLTWTTMVSGYAKLGD 266
           H  +   G    +   S +VD   + G++S A  L +      D + W T++S     G+
Sbjct: 656 HSMLSNYGLDPQLEHYSCVVDIMGRSGQVSKALELIEGMPFEADAVIWRTLLSICKIHGN 715

Query: 267 MESASKLFNEMPEKNP---VSWTTLIAGYTRNGLGQKALEL--FTRMMILRIRPNQHTFS 321
           +E A K    + +  P    ++  L   Y   G+  +  +L    R   L+  P      
Sbjct: 716 VEVAEKAAYSILQLEPEDSAAYVLLSNIYANAGMWNEVTKLRKMMRFNGLKKEPG----- 770

Query: 322 SCLCACASIVSLKHGKQVHGFLI 344
              C+   I S     +VH FL+
Sbjct: 771 ---CSWIEIKS-----EVHAFLV 785



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 58/232 (25%), Positives = 96/232 (41%), Gaps = 42/232 (18%)

Query: 317 QHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFD 376
           + TFS     C+   +L  GKQ H  +I T F+    V + LI MY KC  L    +VFD
Sbjct: 42  KKTFSHIFQECSDRKALCPGKQAHARMILTEFKPTVFVTNCLIQMYIKCSDLEFAFKVFD 101

Query: 377 LTDNKE----NSML--------------------------WNTMISALTQHGYDEQAIRL 406
               ++    N+ML                          WN++IS    +G   + I +
Sbjct: 102 GMPQRDTVSWNAMLFGYAGRGDIGVAQKLFDAMPERDVVSWNSLISGYLHNGDHRKVIDV 161

Query: 407 FHDMVRSSVKPDKITLAVILNACT----HSGLVQ-EGLTYFESMTHDLGIIPNQEHHACL 461
           F  M R     D+ T AV+L +C+    H G +Q  GL     M  D  ++      + L
Sbjct: 162 FLQMGRMGTVFDRTTFAVVLKSCSSLEDHGGGIQIHGLAV--KMGFDCDVVTG----SAL 215

Query: 462 IELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQL 513
           +++ A+    D  +     MP E +   W+A+   C  + ++  G ++  ++
Sbjct: 216 LDMYAKCKKLDCSIQFFHSMP-EKNWVSWSAIIAGCVQNDDLRGGLELFKEM 266


>gi|359489593|ref|XP_003633947.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g08510-like [Vitis vinifera]
          Length = 512

 Score =  320 bits (821), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 162/461 (35%), Positives = 260/461 (56%), Gaps = 1/461 (0%)

Query: 135 MKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTI 194
           + +A  LFD + +  V  +N +I  Y+  G   +    Y  +     S NE SF  + + 
Sbjct: 32  IPYAHKLFDFIPKPTVFLYNKLIQAYSSHGPHHQCFSLYTQMCLQGCSPNEHSFTFLFSA 91

Query: 195 CVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTW 254
           C  L   +  R +H   + +GF  +V   +++VD YAK G LS AR+ FDE   RDV TW
Sbjct: 92  CASLSSHQQGRMLHTHFVKSGFGCDVFALTALVDMYAKLGLLSLARKQFDEMTVRDVPTW 151

Query: 255 TTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMI-LRI 313
            +M++GYA+ GD+E A +LF  MP +N  SWT +I+GY +NG   KAL +F  M     +
Sbjct: 152 NSMIAGYARCGDLEGALELFRLMPARNVTSWTAMISGYAQNGQYAKALSMFLMMEEETEM 211

Query: 314 RPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQ 373
           RPN+ T +S L ACA++ +L+ G+++  +     +  N  V ++L++MY++CG ++    
Sbjct: 212 RPNEVTLASVLPACANLGALEVGERIEVYARGNGYFKNLYVSNALLEMYARCGRIDKAWG 271

Query: 374 VFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSG 433
           VF+  D + N   WN+MI  L  HG  ++AI LF+ M+R    PD +T   +L ACTH G
Sbjct: 272 VFEEIDGRRNLCSWNSMIMGLAVHGRCDEAIELFYKMLREGAAPDDVTFVGVLLACTHGG 331

Query: 434 LVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNAL 493
           +V EG  +FESM  D  I P  EH+ C+++LL +AG   +  + + +MP E DS +W  L
Sbjct: 332 MVVEGQHFFESMERDFSIAPKLEHYGCMVDLLGRAGELREAHDLILRMPMEPDSVVWGTL 391

Query: 494 HGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFK 553
            G C  HG++++  K    L +  P +   + +LS+IY+  G+   V ++R+L+   +  
Sbjct: 392 LGACSFHGHVELAEKAAGALFELEPSNPGNYVILSNIYATAGRWDGVARLRKLMKGGKIT 451

Query: 554 KEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQM 594
           K    S+IE    +H F V D  H   D +Y++L++++ +M
Sbjct: 452 KAAGYSFIEEGGHIHKFIVEDRSHSRSDEIYALLDEVSMKM 492



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 96/389 (24%), Positives = 176/389 (45%), Gaps = 38/389 (9%)

Query: 18  NCLIQSFLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLH 77
           N LIQ++    S G   +  S    +  +G      +  F+   CA   S + G+ +H H
Sbjct: 51  NKLIQAY---SSHGPHHQCFSLYTQMCLQGCSPNEHSFTFLFSACASLSSHQQGRMLHTH 107

Query: 78  LKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKH 137
             +        F    L+ MY K G    ARK FD++ V+++ ++N+M++GYA  G ++ 
Sbjct: 108 F-VKSGFGCDVFALTALVDMYAKLGLLSLARKQFDEMTVRDVPTWNSMIAGYARCGDLEG 166

Query: 138 ARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFS-ISCNEFSFAGILTICV 196
           A  LF  M  R+V SW  MI GYA++G   + L  + ++   + +  NE + A +L  C 
Sbjct: 167 ALELFRLMPARNVTSWTAMISGYAQNGQYAKALSMFLMMEEETEMRPNEVTLASVLPACA 226

Query: 197 KLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDA-RDVLTWT 255
            L  L++  ++       G+  N+ +S+++++ YA+CG +  A  +F+E D  R++ +W 
Sbjct: 227 NLGALEVGERIEVYARGNGYFKNLYVSNALLEMYARCGRIDKAWGVFEEIDGRRNLCSWN 286

Query: 256 TMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRP 315
           +M+ G A                                +G   +A+ELF +M+     P
Sbjct: 287 SMIMGLAV-------------------------------HGRCDEAIELFYKMLREGAAP 315

Query: 316 NQHTFSSCLCACASIVSLKHGKQVHGFLIRT-NFRSNTIVMSSLIDMYSKCGCLNDGRQV 374
           +  TF   L AC     +  G+     + R  +          ++D+  + G L +   +
Sbjct: 316 DDVTFVGVLLACTHGGMVVEGQHFFESMERDFSIAPKLEHYGCMVDLLGRAGELREAHDL 375

Query: 375 FDLTDNKENSMLWNTMISALTQHGYDEQA 403
                 + +S++W T++ A + HG+ E A
Sbjct: 376 ILRMPMEPDSVVWGTLLGACSFHGHVELA 404


>gi|357138593|ref|XP_003570875.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Brachypodium distachyon]
          Length = 664

 Score =  320 bits (821), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 176/569 (30%), Positives = 297/569 (52%), Gaps = 61/569 (10%)

Query: 84  KTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFD 143
           + P ++ +  L++ Y +CG   +AR++FD++P +N+ S+N M+SGY   GM++ AR LFD
Sbjct: 103 RNPVSWAA--LLTGYARCGRVAEARELFDRMPDRNVVSWNAMMSGYLRNGMVERARELFD 160

Query: 144 NMAERDVVSWNTMIIGYAKSGAVEEGLK-------------------------------- 171
            M  R+ VSW TMI GY K   + E  +                                
Sbjct: 161 MMPSRNDVSWLTMISGYIKKRRLREARELFDLSPSHPTSVCNALLSGYVALSCLKDAEEL 220

Query: 172 FYKVLRRFSISCN----EFSFAGILTICVKL-EELKLTRQVHGQVLVTGFLSN------- 219
           F ++ RR  +S N     ++ AG + +   L +E+     +    ++ G+L N       
Sbjct: 221 FGRMQRRDPVSWNVMITGYARAGRMQVAQSLFDEMPQKDTISWTAVMRGYLQNGDVDASW 280

Query: 220 ----------VVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMES 269
                     VV  ++++  + +   L DA RLF E   RD+++W T++ G+ + GDM +
Sbjct: 281 KVFQDIPDRDVVAWNTMMGGFVQSERLDDALRLFAEMPERDLVSWNTILQGHVQQGDMAT 340

Query: 270 ASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACAS 329
           A+  F  MPEK+  SW TLI+G+   G    AL L + M+   +RP++ T S  +  CAS
Sbjct: 341 ANTWFRGMPEKDETSWNTLISGHKDEG----ALALLSEMIRGGLRPDEATLSVVISICAS 396

Query: 330 IVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNT 389
           +V+L +GK VH + ++T F  + +VMSSLI MYSKCG + +  QVF L   ++ ++ WN 
Sbjct: 397 LVALGYGKMVHLYAVKTGFEHDALVMSSLISMYSKCGLIAEASQVFKLLVQRD-TVTWNA 455

Query: 390 MISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDL 449
           MI+    HG   +A++LF+ M +   +PD  T   +L+AC H G + EG  YF SM  D 
Sbjct: 456 MIATYAYHGMASEALKLFNKMTKDGFRPDHATFLSVLSACAHKGDLYEGCRYFRSMQEDW 515

Query: 450 GIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKV 509
            + P  +H++C+++LL + G   Q  +   K+P +     W  L   C  HG++ +G  +
Sbjct: 516 NLTPRSDHYSCMVDLLGRLGFIYQAYDFTRKIPSDLQINAWETLFSACNAHGDVQLGEVI 575

Query: 510 VDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHA 569
              ++   P     + LL++IY++         VR ++ E+  KKE   SW+E++ +V +
Sbjct: 576 AKDVLQARPSDGGMYTLLANIYASKEMWSSAASVRGVMKEQGLKKETGCSWVELKGEVVS 635

Query: 570 FSVSDSLHPMRDVLYSVLEQLAGQMGEDA 598
           FS +D+ HP+ + +   ++ L+  + E A
Sbjct: 636 FSSNDNAHPLIEWICQEVDNLSVMIEEGA 664



 Score =  171 bits (434), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 123/444 (27%), Positives = 218/444 (49%), Gaps = 34/444 (7%)

Query: 106 DARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGA 165
           DAR+VFD +PV+N  S+  +L+GYA  G +  AR LFD M +R+VVSWN M+ GY ++G 
Sbjct: 92  DARRVFDAMPVRNPVSWAALLTGYARCGRVAEARELFDRMPDRNVVSWNAMMSGYLRNGM 151

Query: 166 VEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSS 225
           VE   + + ++     S N+ S+  +++  +K   L+  R++    L     ++V   ++
Sbjct: 152 VERARELFDMMP----SRNDVSWLTMISGYIKKRRLREARELFD--LSPSHPTSVC--NA 203

Query: 226 IVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSW 285
           ++  Y     L DA  LF     RD ++W  M++GYA+ G M+ A  LF+EMP+K+ +SW
Sbjct: 204 LLSGYVALSCLKDAEELFGRMQRRDPVSWNVMITGYARAGRMQVAQSLFDEMPQKDTISW 263

Query: 286 TTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIR 345
           T ++ GY +NG    + ++F  +      P++   +        + S +    +   L  
Sbjct: 264 TAVMRGYLQNGDVDASWKVFQDI------PDRDVVAWNTMMGGFVQSERLDDALR--LFA 315

Query: 346 TNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIR 405
                + +  ++++  + + G +      F     K+ +  WNT+IS       DE A+ 
Sbjct: 316 EMPERDLVSWNTILQGHVQQGDMATANTWFRGMPEKDETS-WNTLISGHK----DEGALA 370

Query: 406 LFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHA----CL 461
           L  +M+R  ++PD+ TL+V+++ C  + LV  G   +  M H   +    EH A     L
Sbjct: 371 LLSEMIRGGLRPDEATLSVVISIC--ASLVALG---YGKMVHLYAVKTGFEHDALVMSSL 425

Query: 462 IELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSS 521
           I + ++ G   +  +Q+ K+  + D+  WNA+      HG      K+ +++     +  
Sbjct: 426 ISMYSKCGLIAE-ASQVFKLLVQRDTVTWNAMIATYAYHGMASEALKLFNKMTKDGFRPD 484

Query: 522 ATHGLLSSIYSALG-KGRLVEKVR 544
             H    S+ SA   KG L E  R
Sbjct: 485 --HATFLSVLSACAHKGDLYEGCR 506



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 107/430 (24%), Positives = 189/430 (43%), Gaps = 72/430 (16%)

Query: 118 NLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLR 177
           ++F +N +++ +   G +  AR +FD M ER+V +WN MI G   +  + +  + +  + 
Sbjct: 42  DIFQWNAVITAHLRAGRVAAARRVFDEMPERNVFTWNCMISGLVGNRMLADARRVFDAMP 101

Query: 178 RFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELS 237
                 N  S+A +LT                                    YA+CG ++
Sbjct: 102 ----VRNPVSWAALLT-----------------------------------GYARCGRVA 122

Query: 238 DARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGL 297
           +AR LFD    R+V++W  M+SGY + G +E A +LF+ MP +N VSW T+I+GY +   
Sbjct: 123 EARELFDRMPDRNVVSWNAMMSGYLRNGMVERARELFDMMPSRNDVSWLTMISGYIKKRR 182

Query: 298 GQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSS 357
            ++A ELF       + P+ H  S C    +  V+L   K       R   R + +  + 
Sbjct: 183 LREARELFD------LSPS-HPTSVCNALLSGYVALSCLKDAEELFGRMQ-RRDPVSWNV 234

Query: 358 LIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKP 417
           +I  Y++ G +   + +FD    K+ ++ W  ++    Q+G  + + ++F D+      P
Sbjct: 235 MITGYARAGRMQVAQSLFDEMPQKD-TISWTAVMRGYLQNGDVDASWKVFQDI------P 287

Query: 418 DKITLA--VILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLM 475
           D+  +A   ++     S  + + L  F  M     +  N      +++   Q G      
Sbjct: 288 DRDVVAWNTMMGGFVQSERLDDALRLFAEMPERDLVSWN-----TILQGHVQQGDMATAN 342

Query: 476 NQLEKMPYEHDSYLWNALHGVCRIHGNIDMGR-KVVDQLIDQNPQ-SSATHGLLSSIYS- 532
                MP E D   WN L     I G+ D G   ++ ++I    +   AT  ++ SI + 
Sbjct: 343 TWFRGMP-EKDETSWNTL-----ISGHKDEGALALLSEMIRGGLRPDEATLSVVISICAS 396

Query: 533 --ALGKGRLV 540
             ALG G++V
Sbjct: 397 LVALGYGKMV 406



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 46/159 (28%), Positives = 85/159 (53%), Gaps = 5/159 (3%)

Query: 23  SFLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQ 82
           S+ +LIS  +   A++ L  + + G+R    TL+ ++  CA   +L  GK VHL+   T 
Sbjct: 355 SWNTLISGHKDEGALALLSEMIRGGLRPDEATLSVVISICASLVALGYGKMVHLYAVKTG 414

Query: 83  RKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLF 142
            +     +S+ LISMY KCG   +A +VF  +  ++  ++N M++ YA  GM   A  LF
Sbjct: 415 FEHDALVMSS-LISMYSKCGLIAEASQVFKLLVQRDTVTWNAMIATYAYHGMASEALKLF 473

Query: 143 DNMAER----DVVSWNTMIIGYAKSGAVEEGLKFYKVLR 177
           + M +     D  ++ +++   A  G + EG ++++ ++
Sbjct: 474 NKMTKDGFRPDHATFLSVLSACAHKGDLYEGCRYFRSMQ 512


>gi|357438977|ref|XP_003589765.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355478813|gb|AES60016.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 960

 Score =  320 bits (820), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 167/556 (30%), Positives = 295/556 (53%), Gaps = 34/556 (6%)

Query: 43  LAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCG 102
           +  +G      T   +L  CA +  LK G  +H  +   +      F  N LI MY KCG
Sbjct: 269 MCNQGFSPNFMTYGSVLSACASTSDLKWGAHLHARILRMEHSLDLVF-GNGLIDMYAKCG 327

Query: 103 SDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAK 162
                                           +  A+ +F ++ E D +SWN++I G   
Sbjct: 328 C-------------------------------LDLAKRVFKSLREHDHISWNSLITGVVH 356

Query: 163 SGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVI 222
            G  E+ L  +  +RR S+  +EF    IL +C   +       +HG  + +G  S+  +
Sbjct: 357 FGLGEDALILFNQMRRSSVVLDEFILPTILGVCSGPDYASTGELLHGYTIKSGMGSSAPV 416

Query: 223 SSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNP 282
            ++I+  YAKCG+   A  +F     R+ ++WT M++ +++ GD+  A   F+ MPE+N 
Sbjct: 417 GNAIITMYAKCGDTDKADLVFRLMPLRNTISWTAMITAFSRSGDIGKARGYFDMMPERNI 476

Query: 283 VSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGF 342
           V+W ++++ Y +NG  ++ L+L+  M    ++P+  TF++ + ACA +  +K G QV   
Sbjct: 477 VTWNSMLSTYVQNGFSEEGLKLYVSMRSNGVQPDWITFTTSIRACADLAIVKLGMQVVTH 536

Query: 343 LIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQ 402
             +     N  V +S++ MYS+CG + + +  FD  D+K+  + WN M++A  Q+G   +
Sbjct: 537 ATKFGLSLNVSVANSIVTMYSRCGLIKEAKNTFDSIDDKD-LISWNAMLAAFAQNGLGIK 595

Query: 403 AIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLI 462
            I  F DM+++  KP+ I+   +L+ C+H GLV EG  YF+SMT   GI P  EH +C++
Sbjct: 596 VIDTFEDMLKTECKPNHISYVSVLSGCSHMGLVAEGKHYFDSMTRVFGISPTNEHFSCMV 655

Query: 463 ELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSA 522
           +LL +AG  +Q  + +E MP++ ++ +W+AL G CR+H ++ +      +L++ + + S 
Sbjct: 656 DLLGRAGLLEQAKDLIEGMPFKPNATVWSALLGSCRVHHDLRLAETAAKKLMELDVEGSE 715

Query: 523 THGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDV 582
            + LLS++YS  G+   V  +R+L+  +  +  +  SWIE++N+VH F+V ++ HP    
Sbjct: 716 GYVLLSNMYSESGELDNVADMRKLMKVKGIRTSRGCSWIEVDNRVHVFTVDETSHPQIKE 775

Query: 583 LYSVLEQLAGQMGEDA 598
           +Y  LE++  +M ED 
Sbjct: 776 VYLKLEEMM-KMIEDT 790



 Score =  219 bits (557), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 141/466 (30%), Positives = 236/466 (50%), Gaps = 11/466 (2%)

Query: 59  LQQCAES-KSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVK 117
            +QC+ + KS  + +++H  L L+   +    L N+L+ MY  CG   DA +VF +   +
Sbjct: 14  FKQCSFTHKSPHIARKLHAQLILSGLDSSLF-LLNNLLHMYSNCGLTHDAFQVFQETHHR 72

Query: 118 NLFSYNNMLSGYANLGMMKHARNLFDNMAER--DVVSWNTMIIGYAKSGAVEEGLKFYKV 175
           N+F++N M+    +   M  A  LFD M  R  D VSW TMI GY+++G      + + +
Sbjct: 73  NIFTWNTMIRALVSSSRMSDAEKLFDEMPVRVKDSVSWTTMISGYSQNGFHSRSFETFSL 132

Query: 176 LRRFS----ISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYA 231
           + R +     + + FSF  ++  C  L + +L  Q+H  V   GF     I +S+V  Y 
Sbjct: 133 MIRDTNDGGKNYDPFSFTSVMKACGSLGDSRLAIQLHALVSKLGFGMETCIQNSVVGMYV 192

Query: 232 KCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAG 291
           KCG++  A  +F + +   +  W +M+ GY+++     A ++FN MPE++ VSW TLI+ 
Sbjct: 193 KCGDVDLAETVFFDIERPSLFCWNSMIYGYSQMYGPYKALQIFNRMPERDEVSWNTLISI 252

Query: 292 YTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSN 351
           ++++G G + L +F  M      PN  T+ S L ACAS   LK G  +H  ++R     +
Sbjct: 253 FSQHGFGVQCLAMFVEMCNQGFSPNFMTYGSVLSACASTSDLKWGAHLHARILRMEHSLD 312

Query: 352 TIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMV 411
            +  + LIDMY+KCGCL+  ++VF  +  + + + WN++I+ +   G  E A+ LF+ M 
Sbjct: 313 LVFGNGLIDMYAKCGCLDLAKRVFK-SLREHDHISWNSLITGVVHFGLGEDALILFNQMR 371

Query: 412 RSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCS 471
           RSSV  D+  L  IL  C+       G       T   G+  +      +I + A+ G +
Sbjct: 372 RSSVVLDEFILPTILGVCSGPDYASTG-ELLHGYTIKSGMGSSAPVGNAIITMYAKCGDT 430

Query: 472 DQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQN 517
           D+       MP   ++  W A+       G+I   R   D + ++N
Sbjct: 431 DKADLVFRLMPLR-NTISWTAMITAFSRSGDIGKARGYFDMMPERN 475


>gi|357146098|ref|XP_003573875.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
           mitochondrial-like [Brachypodium distachyon]
          Length = 652

 Score =  320 bits (820), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 163/486 (33%), Positives = 276/486 (56%), Gaps = 2/486 (0%)

Query: 118 NLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLK-FYKVL 176
           ++F  N  +   A    M  AR LFD    RD+VSWNT+I GY + G   E L+ F++++
Sbjct: 154 DVFVVNAAMHFLAVCSSMAEARKLFDGSHVRDLVSWNTLIGGYVRRGVPREALEMFWRMV 213

Query: 177 RRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGEL 236
              +++ +E +  G+++   +L +L+L R++HG V   G    V + + ++D Y KCG+L
Sbjct: 214 GDGAVTPDEVTMIGVVSGSAQLRDLELGRRLHGYVESHGVRCTVRLMNVVMDMYIKCGDL 273

Query: 237 SDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNG 296
             A+ +F+  D + +++WTTM+ GYA+ G M+ A K+F+EMPE++   W  L+ GY +  
Sbjct: 274 ERAKSVFEGIDKKTIVSWTTMIVGYAQFGLMDDARKVFDEMPERDVFPWNALMTGYVQCK 333

Query: 297 LGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMS 356
            G++AL LF  M    + P+  T  + L AC+ + +L+ G  VH ++ R     + ++ +
Sbjct: 334 RGKEALRLFHDMQEAMVEPDDITMVNLLSACSQLGALEMGMWVHHYIDRRRVSLSVMLGT 393

Query: 357 SLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVK 416
           +L+DMYSKCG +    +VF     K N++ W  MIS L  HG+ + AI+ F  M+   ++
Sbjct: 394 NLVDMYSKCGNIEKAIRVFKEIPEK-NALTWTAMISGLANHGHADVAIKYFQRMIELGLQ 452

Query: 417 PDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMN 476
           PD+IT   +L+AC H+GLV+EG  +F  M     +    +H++C+++LL +AG  D+  +
Sbjct: 453 PDEITFIGVLSACCHAGLVKEGQEFFSLMVSKYHLERKMKHYSCMVDLLGRAGYLDEAEH 512

Query: 477 QLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGK 536
            +  MP E D+ +W AL   CR+HGNI +G K   +L++ +P  S  + LL+++Y+    
Sbjct: 513 LVNTMPMEPDAVVWGALFFACRMHGNITLGEKAAMKLVELDPGDSGIYVLLANMYAEANM 572

Query: 537 GRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQMGE 596
            +  +KVR ++     +K    S IE+   VH F V D  H     +Y  L ++  Q+  
Sbjct: 573 RKKADKVRVMMRHLGVEKVPGCSCIELNGVVHEFIVKDKSHTDIAAIYDCLHEITLQIEH 632

Query: 597 DAPSLD 602
            A  +D
Sbjct: 633 TANMID 638



 Score =  162 bits (410), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 98/383 (25%), Positives = 183/383 (47%), Gaps = 37/383 (9%)

Query: 18  NCLIQSFLSLISKGQLSEAISSLDLLAQRGIRLPAE-TLAFILQQCAESKSLKLGKRVHL 76
           N LI  +   + +G   EA+     +   G   P E T+  ++   A+ + L+LG+R+H 
Sbjct: 190 NTLIGGY---VRRGVPREALEMFWRMVGDGAVTPDEVTMIGVVSGSAQLRDLELGRRLHG 246

Query: 77  HLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMK 136
           +++ +     T  L N ++ MY KCG    A+ VF+ I  K + S+  M+ GYA  G+M 
Sbjct: 247 YVE-SHGVRCTVRLMNVVMDMYIKCGDLERAKSVFEGIDKKTIVSWTTMIVGYAQFGLMD 305

Query: 137 HARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICV 196
            AR +FD M ERDV  WN ++ GY +    +E L+ +  ++   +  ++ +   +L+ C 
Sbjct: 306 DARKVFDEMPERDVFPWNALMTGYVQCKRGKEALRLFHDMQEAMVEPDDITMVNLLSACS 365

Query: 197 KLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTT 256
           +L  L++   VH  +       +V++ +++VD Y+KCG +  A R+F E   ++ LTWT 
Sbjct: 366 QLGALEMGMWVHHYIDRRRVSLSVMLGTNLVDMYSKCGNIEKAIRVFKEIPEKNALTWTA 425

Query: 257 MVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPN 316
           M+SG A                                +G    A++ F RM+ L ++P+
Sbjct: 426 MISGLAN-------------------------------HGHADVAIKYFQRMIELGLQPD 454

Query: 317 QHTFSSCLCACASIVSLKHGKQVHGFLI-RTNFRSNTIVMSSLIDMYSKCGCLNDGRQVF 375
           + TF   L AC     +K G++    ++ + +        S ++D+  + G L++   + 
Sbjct: 455 EITFIGVLSACCHAGLVKEGQEFFSLMVSKYHLERKMKHYSCMVDLLGRAGYLDEAEHLV 514

Query: 376 DLTDNKENSMLWNTMISALTQHG 398
           +    + ++++W  +  A   HG
Sbjct: 515 NTMPMEPDAVVWGALFFACRMHG 537



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 102/403 (25%), Positives = 183/403 (45%), Gaps = 75/403 (18%)

Query: 164 GAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVIS 223
           G V   L  Y  L R S   +  +F  +L  C +L+E      V G VL  GF ++V + 
Sbjct: 100 GLVTRCLPLYCSLLR-SARPDHLTFPFLLKACARLQERNYGNAVLGNVLSLGFHADVFVV 158

Query: 224 SSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPV 283
           ++ +   A C  +++AR+LFD +  RD+++W T++ G                       
Sbjct: 159 NAAMHFLAVCSSMAEARKLFDGSHVRDLVSWNTLIGG----------------------- 195

Query: 284 SWTTLIAGYTRNGLGQKALELFTRMM-ILRIRPNQHTFSSCLCACASIVSLKHGKQVHGF 342
                   Y R G+ ++ALE+F RM+    + P++ T    +   A +  L+ G+++HG+
Sbjct: 196 --------YVRRGVPREALEMFWRMVGDGAVTPDEVTMIGVVSGSAQLRDLELGRRLHGY 247

Query: 343 LIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHG---- 398
           +     R    +M+ ++DMY KCG L   + VF+  D K+  + W TMI    Q G    
Sbjct: 248 VESHGVRCTVRLMNVVMDMYIKCGDLERAKSVFEGID-KKTIVSWTTMIVGYAQFGLMDD 306

Query: 399 ----YDE-----------------------QAIRLFHDMVRSSVKPDKITLAVILNACTH 431
               +DE                       +A+RLFHDM  + V+PD IT+  +L+AC+ 
Sbjct: 307 ARKVFDEMPERDVFPWNALMTGYVQCKRGKEALRLFHDMQEAMVEPDDITMVNLLSACSQ 366

Query: 432 SGLVQEGL---TYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSY 488
            G ++ G+    Y +     L ++        L+++ ++ G  ++ +   +++P E ++ 
Sbjct: 367 LGALEMGMWVHHYIDRRRVSLSVMLGTN----LVDMYSKCGNIEKAIRVFKEIP-EKNAL 421

Query: 489 LWNALHGVCRIHGNIDMGRKVVDQLIDQN--PQSSATHGLLSS 529
            W A+      HG+ D+  K   ++I+    P      G+LS+
Sbjct: 422 TWTAMISGLANHGHADVAIKYFQRMIELGLQPDEITFIGVLSA 464


>gi|357518009|ref|XP_003629293.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355523315|gb|AET03769.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 672

 Score =  320 bits (820), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 176/524 (33%), Positives = 292/524 (55%), Gaps = 17/524 (3%)

Query: 51  PAETL---AFILQQ----CAESKSLKLGKRVHLHL-----KLTQRKTPTTFLSNHLISMY 98
           P ET+   AF+L      CA+  +L  GK+VH  +     +  Q K     L + +++ Y
Sbjct: 153 PLETVHRDAFVLSTVFGACADLFALDCGKQVHARVFIDGFEFEQDKV----LCSSIVNFY 208

Query: 99  FKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMII 158
            KCG    A +V   +   + FS + ++SGYAN G M  AR +FDN  +   V WN++I 
Sbjct: 209 GKCGDLDSAARVVGFVKEVDDFSLSALVSGYANAGRMSDARKVFDNKVDPCSVLWNSIIS 268

Query: 159 GYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLS 218
           GY  +G   E L  +  +RR  +  +  + A IL+I   L  ++L +Q+H      G   
Sbjct: 269 GYVSNGEEMEALALFNKMRRNGVWGDFSAVANILSISSSLLNVELVKQMHDHAFKIGATH 328

Query: 219 NVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMP 278
           ++V++S+++DAY+KC    D+ +LF E    D +   TM++ Y   G +E A ++FN MP
Sbjct: 329 DIVVASTLLDAYSKCQHPHDSCKLFHELKVYDAILLNTMITVYCNCGRVEDAKEVFNSMP 388

Query: 279 EKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQ 338
            K  +SW +++ G T+N    +AL+ F+ M  L ++ ++ +F+S + ACA   SL+ G+Q
Sbjct: 389 NKTLISWNSILVGLTQNACPSEALDTFSMMNKLDVKMDKFSFASVISACAIKSSLELGEQ 448

Query: 339 VHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHG 398
           + G  I     S+ I+ +SL+D Y KCG +  GR+VFD    K + + WNTM+     +G
Sbjct: 449 LFGKAITLGLESDQIICTSLVDFYCKCGLVEMGRKVFDGMI-KTDEVSWNTMLMGYATNG 507

Query: 399 YDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHH 458
           Y  +A+ LF++M  S V+P  IT   IL+AC H GLV+EG   F +M HD  I P  EH+
Sbjct: 508 YGIEALTLFNEMGYSGVRPSAITFTGILSACDHCGLVEEGRDLFRTMKHDYDINPGIEHY 567

Query: 459 ACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNP 518
           +C+++L A+ GC  + M  +E+MP++ D+ +W ++   C  HGN  +G+   +++I  +P
Sbjct: 568 SCMVDLFARVGCFGEAMYLIEEMPFQADANMWLSVLRGCVSHGNKTIGKMAAEKIIQLDP 627

Query: 519 QSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIE 562
            +S  +  LS+I +         +VR+L+  +  +K    SW++
Sbjct: 628 GNSGAYIQLSNILATSEDWEGSAEVRELMRNKNVQKIPGCSWMD 671



 Score =  169 bits (429), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 133/498 (26%), Positives = 232/498 (46%), Gaps = 47/498 (9%)

Query: 66  KSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNM 125
           ++++  +++HL L  T     +   +N L+ +Y + GS  DA K+FD++P  N FS+N +
Sbjct: 8   RTIREARQLHLSLLKTGNLHSSVITTNRLLQLYSRRGSLHDASKLFDEMPQPNPFSWNTL 67

Query: 126 LSGYANLGM-------------------------------MKHARNLFDNMAERDVVSWN 154
           +  + NLG                                ++ A+ LF+ M  ++ + WN
Sbjct: 68  IEAHINLGHRNKSLELFHAMPHKTHYSWNLIVSTLSKSGDLQQAQALFNAMPMKNPLVWN 127

Query: 155 TMIIGYAKSGAVEEGLKFYKVLRRFSISC---NEFSFAGILTICVKLEELKLTRQVHGQV 211
           +MI GY++ G     L  +K +    +     + F  + +   C  L  L   +QVH +V
Sbjct: 128 SMIHGYSRHGYPRNSLLLFKEMNLDPLETVHRDAFVLSTVFGACADLFALDCGKQVHARV 187

Query: 212 LVTG--FLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMES 269
            + G  F  + V+ SSIV+ Y KCG+L  A R+       D  + + +VSGYA  G M  
Sbjct: 188 FIDGFEFEQDKVLCSSIVNFYGKCGDLDSAARVVGFVKEVDDFSLSALVSGYANAGRMSD 247

Query: 270 ASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACAS 329
           A K+F+   +   V W ++I+GY  NG   +AL LF +M    +  +    ++ L   +S
Sbjct: 248 ARKVFDNKVDPCSVLWNSIISGYVSNGEEMEALALFNKMRRNGVWGDFSAVANILSISSS 307

Query: 330 IVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNT 389
           +++++  KQ+H    +     + +V S+L+D YSKC   +D  ++F       +++L NT
Sbjct: 308 LLNVELVKQMHDHAFKIGATHDIVVASTLLDAYSKCQHPHDSCKLFHEL-KVYDAILLNT 366

Query: 390 MISALTQHGYDEQAIRLFHDMV-RSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHD 448
           MI+     G  E A  +F+ M  ++ +  + I + +  NAC       E L  F SM + 
Sbjct: 367 MITVYCNCGRVEDAKEVFNSMPNKTLISWNSILVGLTQNACP-----SEALDTF-SMMNK 420

Query: 449 LGIIPNQEHHACLIELLAQAGC---SDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDM 505
           L +  ++   A +I   A        +QL  +   +  E D  +  +L       G ++M
Sbjct: 421 LDVKMDKFSFASVISACAIKSSLELGEQLFGKAITLGLESDQIICTSLVDFYCKCGLVEM 480

Query: 506 GRKVVDQLIDQNPQSSAT 523
           GRKV D +I  +  S  T
Sbjct: 481 GRKVFDGMIKTDEVSWNT 498



 Score = 62.0 bits (149), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 44/171 (25%), Positives = 78/171 (45%), Gaps = 8/171 (4%)

Query: 14  NLPNNCLIQS---FLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKL 70
           ++PN  LI      + L      SEA+ +  ++ +  +++   + A ++  CA   SL+L
Sbjct: 386 SMPNKTLISWNSILVGLTQNACPSEALDTFSMMNKLDVKMDKFSFASVISACAIKSSLEL 445

Query: 71  GKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYA 130
           G+++     +T        +   L+  Y KCG     RKVFD +   +  S+N ML GYA
Sbjct: 446 GEQL-FGKAITLGLESDQIICTSLVDFYCKCGLVEMGRKVFDGMIKTDEVSWNTMLMGYA 504

Query: 131 NLGMMKHARNLFDNMAERDV----VSWNTMIIGYAKSGAVEEGLKFYKVLR 177
             G    A  LF+ M    V    +++  ++      G VEEG   ++ ++
Sbjct: 505 TNGYGIEALTLFNEMGYSGVRPSAITFTGILSACDHCGLVEEGRDLFRTMK 555


>gi|356518302|ref|XP_003527818.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g20540-like [Glycine max]
          Length = 535

 Score =  320 bits (820), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 169/506 (33%), Positives = 285/506 (56%), Gaps = 6/506 (1%)

Query: 90  LSNHLISMYFKCGSDVDARKVFDKIPVKNL----FSYNNMLSGYANLGMMKHARNLFDNM 145
           L N  ++    C    + +K+   I   +L    F    ML    NL  + +A  +F  +
Sbjct: 6   LENRFVTTLRNCPKIAELKKIHAHIVKLSLSQSNFLVTKMLDLCDNLSHVDYATMIFQQL 65

Query: 146 AERDVVSWNTMIIGYAKSGAVEEGLK-FYKVLRRFSISCNEFSFAGILTICVKLEELKLT 204
              +V S+N +I  Y  +      +  F ++L   S S ++F+F  ++  C  L   +L 
Sbjct: 66  ENPNVFSYNAIIRTYTHNHKHPLAITVFNQMLTTKSASPDKFTFPFVIKSCAGLLCRRLG 125

Query: 205 RQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKL 264
           +QVH  V   G  ++ +  ++++D Y KCG++S A ++++E   RD ++W +++SG+ +L
Sbjct: 126 QQVHAHVCKFGPKTHAITENALIDMYTKCGDMSGAYQVYEEMTERDAVSWNSLISGHVRL 185

Query: 265 GDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCL 324
           G M+SA ++F+EMP +  VSWTT+I GY R G    AL +F  M ++ I P++ +  S L
Sbjct: 186 GQMKSAREVFDEMPCRTIVSWTTMINGYARGGCYADALGIFREMQVVGIEPDEISVISVL 245

Query: 325 CACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENS 384
            ACA + +L+ GK +H +  ++ F  N  V ++L++MY+KCGC+++   +F+    K+  
Sbjct: 246 PACAQLGALEVGKWIHKYSEKSGFLKNAGVFNALVEMYAKCGCIDEAWGLFNQMIEKD-V 304

Query: 385 MLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFES 444
           + W+TMI  L  HG    AIR+F DM ++ V P+ +T   +L+AC H+GL  EGL YF+ 
Sbjct: 305 ISWSTMIGGLANHGKGYAAIRVFEDMQKAGVTPNGVTFVGVLSACAHAGLWNEGLRYFDV 364

Query: 445 MTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNID 504
           M  D  + P  EH+ CL++LL ++G  +Q ++ + KMP + DS  WN+L   CRIH N++
Sbjct: 365 MRVDYHLEPQIEHYGCLVDLLGRSGQVEQALDTILKMPMQPDSRTWNSLLSSCRIHHNLE 424

Query: 505 MGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIE 564
           +    ++QL+   P+ S  + LL++IY+ L K   V  VR+LI  ++ KK    S IE+ 
Sbjct: 425 IAVVAMEQLLKLEPEESGNYVLLANIYAKLDKWEGVSNVRKLIRSKRIKKTPGCSLIEVN 484

Query: 565 NKVHAFSVSDSLHPMRDVLYSVLEQL 590
           N V  F   D   P    ++ +L+ L
Sbjct: 485 NLVQEFVSGDDSKPFSQEVFWILKGL 510



 Score =  162 bits (409), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 85/261 (32%), Positives = 146/261 (55%), Gaps = 5/261 (1%)

Query: 54  TLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDK 113
           T  F+++ CA     +LG++VH H+     KT      N LI MY KCG    A +V+++
Sbjct: 108 TFPFVIKSCAGLLCRRLGQQVHAHVCKFGPKT-HAITENALIDMYTKCGDMSGAYQVYEE 166

Query: 114 IPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFY 173
           +  ++  S+N+++SG+  LG MK AR +FD M  R +VSW TMI GYA+ G   + L  +
Sbjct: 167 MTERDAVSWNSLISGHVRLGQMKSAREVFDEMPCRTIVSWTTMINGYARGGCYADALGIF 226

Query: 174 KVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKC 233
           + ++   I  +E S   +L  C +L  L++ + +H     +GFL N  + +++V+ YAKC
Sbjct: 227 REMQVVGIEPDEISVISVLPACAQLGALEVGKWIHKYSEKSGFLKNAGVFNALVEMYAKC 286

Query: 234 GELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPE----KNPVSWTTLI 289
           G + +A  LF++   +DV++W+TM+ G A  G   +A ++F +M +     N V++  ++
Sbjct: 287 GCIDEAWGLFNQMIEKDVISWSTMIGGLANHGKGYAAIRVFEDMQKAGVTPNGVTFVGVL 346

Query: 290 AGYTRNGLGQKALELFTRMMI 310
           +     GL  + L  F  M +
Sbjct: 347 SACAHAGLWNEGLRYFDVMRV 367



 Score = 60.1 bits (144), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 42/155 (27%), Positives = 78/155 (50%), Gaps = 13/155 (8%)

Query: 31  GQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQR----KTP 86
           G  ++A+     +   GI     ++  +L  CA+  +L++GK +H   K +++    K  
Sbjct: 217 GCYADALGIFREMQVVGIEPDEISVISVLPACAQLGALEVGKWIH---KYSEKSGFLKNA 273

Query: 87  TTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMA 146
             F  N L+ MY KCG   +A  +F+++  K++ S++ M+ G AN G    A  +F++M 
Sbjct: 274 GVF--NALVEMYAKCGCIDEAWGLFNQMIEKDVISWSTMIGGLANHGKGYAAIRVFEDMQ 331

Query: 147 ERDVVSWNTMIIGY----AKSGAVEEGLKFYKVLR 177
           +  V       +G     A +G   EGL+++ V+R
Sbjct: 332 KAGVTPNGVTFVGVLSACAHAGLWNEGLRYFDVMR 366


>gi|297741272|emb|CBI32403.3| unnamed protein product [Vitis vinifera]
          Length = 658

 Score =  320 bits (819), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 180/520 (34%), Positives = 286/520 (55%), Gaps = 46/520 (8%)

Query: 116 VKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLK-FYK 174
           V+++F    +++ YANLG +  +R  FD + ++DV +WN+MI  Y  +G   E +  FY+
Sbjct: 48  VQSIFISTRLVNLYANLGDVSLSRCTFDQIPQKDVYAWNSMISAYVHNGHFHEAIGCFYQ 107

Query: 175 VLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCG 234
           +L    I  + ++F  +L  C  L +    R++H      GF  NV +++S++  Y++ G
Sbjct: 108 LLLVSEIRPDFYTFPPVLKACGTLVD---GRKIHCWAFKLGFQWNVFVAASLIHMYSRFG 164

Query: 235 ELSDARRLFDETDARDVLTWTTMVSG---------------------------------- 260
               AR LFD+   RD+ +W  M+SG                                  
Sbjct: 165 FTGIARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLEGIKMNFVTVVSILP 224

Query: 261 -----YAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILR-IR 314
                YAKLG ++SA K+F  +P K+ +SW TLI GY +NGL  +A+E++  M   + I 
Sbjct: 225 VFVDMYAKLGLLDSAHKVFEIIPVKDVISWNTLITGYAQNGLASEAIEVYKMMEECKEII 284

Query: 315 PNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQV 374
           PNQ T+ S L A A + +L+ G ++HG +I+TN   +  V + LID+Y KCG L D   +
Sbjct: 285 PNQGTWVSILPAYAHVGALQQGMKIHGRVIKTNLHLDVFVATCLIDVYGKCGRLVDAMSL 344

Query: 375 FDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGL 434
           F     +E+S+ WN +IS    HG+ E+ ++LF +M+   VKPD +T   +L+AC+HSG 
Sbjct: 345 FYQVP-QESSVTWNAIISCHGIHGHAEKTLKLFGEMLDEGVKPDHVTFVSLLSACSHSGF 403

Query: 435 VQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALH 494
           V+EG   F  M  + GI P+ +H+ C+++LL +AG  +   + ++ MP + D+ +W AL 
Sbjct: 404 VEEGKWCFRLM-QEYGIKPSLKHYGCMVDLLGRAGYLEMAYDFIKDMPLQPDASIWGALL 462

Query: 495 GVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKK 554
           G CRIHGNI++G+   D+L + + ++   + LLS+IY+ +GK   V+KVR L  ER  KK
Sbjct: 463 GACRIHGNIELGKFASDRLFEVDSKNVGYYVLLSNIYANVGKWEGVDKVRSLARERGLKK 522

Query: 555 EQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQM 594
               S IE+  KV  F   +  HP    +Y  L  L  +M
Sbjct: 523 TPGWSTIEVNRKVDVFYTGNQSHPKCKEIYEELRVLTAKM 562



 Score =  105 bits (261), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 93/410 (22%), Positives = 160/410 (39%), Gaps = 107/410 (26%)

Query: 203 LTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYA 262
             + +H  ++V G + ++ IS+ +V+ YA  G++S +R  FD+   +DV  W +M+S Y 
Sbjct: 34  FAKCLHALLVVAGKVQSIFISTRLVNLYANLGDVSLSRCTFDQIPQKDVYAWNSMISAYV 93

Query: 263 KLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSS 322
             G    A   F ++                              +++  IRP+ +TF  
Sbjct: 94  HNGHFHEAIGCFYQL------------------------------LLVSEIRPDFYTFPP 123

Query: 323 CLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKE 382
            L AC ++V    G+++H +  +  F+ N  V +SLI MYS+ G     R +FD    ++
Sbjct: 124 VLKACGTLVD---GRKIHCWAFKLGFQWNVFVAASLIHMYSRFGFTGIARSLFDDMPFRD 180

Query: 383 NSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVIL---------------- 426
               WN MIS L Q+G   QA+ +  +M    +K + +T+  IL                
Sbjct: 181 MGS-WNAMISGLIQNGNAAQALDVLDEMRLEGIKMNFVTVVSILPVFVDMYAKLGLLDSA 239

Query: 427 -------------------NACTHSGLVQEGLTYFESMTHDLGIIPNQ------------ 455
                                   +GL  E +  ++ M     IIPNQ            
Sbjct: 240 HKVFEIIPVKDVISWNTLITGYAQNGLASEAIEVYKMMEECKEIIPNQGTWVSILPAYAH 299

Query: 456 --------EHHA---------------CLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNA 492
                   + H                CLI++  + G     M+   ++P E  S  WNA
Sbjct: 300 VGALQQGMKIHGRVIKTNLHLDVFVATCLIDVYGKCGRLVDAMSLFYQVPQE-SSVTWNA 358

Query: 493 LHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEK 542
           +     IHG+ +   K+  +++D+  +    H    S+ SA      VE+
Sbjct: 359 IISCHGIHGHAEKTLKLFGEMLDEGVKPD--HVTFVSLLSACSHSGFVEE 406


>gi|297741829|emb|CBI33142.3| unnamed protein product [Vitis vinifera]
          Length = 1198

 Score =  320 bits (819), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 158/487 (32%), Positives = 284/487 (58%), Gaps = 9/487 (1%)

Query: 92  NHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVV 151
           N +I+ Y+K G   +++++F  +P KN+ S+N+M++G      +  A   F  M +R+  
Sbjct: 10  NSIITGYWKNGCFDESKRLFGLMPTKNVVSWNSMIAGCIEDERIDEAWQYFQAMPQRNTA 69

Query: 152 SWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQV 211
           SWN MI G  +   VEE  + ++ + R ++     S+  ++    K+ E++  R +   +
Sbjct: 70  SWNAMISGLVRYDRVEEASRLFEEMPRRNV----ISYTAMVDGYAKIGEIEQARALFNCM 125

Query: 212 LVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESAS 271
                  NVV  + ++  Y + G+  +A  LF++   ++++  T M++GY K G  + A 
Sbjct: 126 PQ----KNVVSWTVMISGYVENGKFDEAENLFEQMPDKNIVAMTAMITGYCKEGKTDKAK 181

Query: 272 KLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIV 331
            LF+++P ++  SW  +I GY +NG G++AL+L ++M+ + ++P+  T  S L AC+S+ 
Sbjct: 182 ILFDQIPCRDLASWNAMITGYAQNGSGEEALKLHSQMLKMGMQPDHSTLISVLTACSSLA 241

Query: 332 SLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMI 391
           SL+ G++ H  ++++ + S   + ++LI MY KCG + D    F   D+  + + WN MI
Sbjct: 242 SLQEGRKTHVLVLKSGYESRISICNALITMYCKCGSILDSELAFRQIDHP-DVVSWNAMI 300

Query: 392 SALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGI 451
           +A  +HG+ ++A+  F +M  + V+PD IT   +L+AC H+G V E L +F SM     I
Sbjct: 301 AAFARHGFYDRALASFGEMRSNRVEPDGITFLSLLSACGHAGKVHESLNWFNSMIESYKI 360

Query: 452 IPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVD 511
           +P  EH ACL+++L++ G  ++    +++MP+E D  +W AL   C +H N+ +G     
Sbjct: 361 VPRPEHFACLVDILSRGGQVEKAYKIIQEMPFEADCGIWGALLAACHVHLNVKLGELAAK 420

Query: 512 QLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFS 571
           ++++  PQ+S  + +LS+IY+A G    V +VR L+ E+  KK+ A SW+EI+NKVH F 
Sbjct: 421 KIVELEPQNSGAYVVLSNIYAAAGMWGEVTRVRGLMREQGVKKQPAYSWMEIDNKVHFFL 480

Query: 572 VSDSLHP 578
             D+ HP
Sbjct: 481 GDDASHP 487



 Score = 79.3 bits (194), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 69/264 (26%), Positives = 119/264 (45%), Gaps = 21/264 (7%)

Query: 249 RDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRM 308
           RD ++W ++++GY K G  + + +LF  MP KN VSW ++IAG   +    +A + F  M
Sbjct: 4   RDTVSWNSIITGYWKNGCFDESKRLFGLMPTKNVVSWNSMIAGCIEDERIDEAWQYFQAM 63

Query: 309 MILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCL 368
                 P ++T +S     + +V     ++    L     R N I  ++++D Y+K G +
Sbjct: 64  ------PQRNT-ASWNAMISGLVRYDRVEEA-SRLFEEMPRRNVISYTAMVDGYAKIGEI 115

Query: 369 NDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNA 428
              R +F+    K N + W  MIS   ++G  ++A  LF  M      PDK  +A+    
Sbjct: 116 EQARALFNCMPQK-NVVSWTVMISGYVENGKFDEAENLFEQM------PDKNIVAMT--- 165

Query: 429 CTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQ---LMNQLEKMPYEH 485
              +G  +EG T    +  D     +      +I   AQ G  ++   L +Q+ KM  + 
Sbjct: 166 AMITGYCKEGKTDKAKILFDQIPCRDLASWNAMITGYAQNGSGEEALKLHSQMLKMGMQP 225

Query: 486 DSYLWNALHGVCRIHGNIDMGRKV 509
           D     ++   C    ++  GRK 
Sbjct: 226 DHSTLISVLTACSSLASLQEGRKT 249



 Score = 55.5 bits (132), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 44/169 (26%), Positives = 80/169 (47%), Gaps = 6/169 (3%)

Query: 31  GQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFL 90
           G   EA+     + + G++    TL  +L  C+   SL+ G++ H+ L L         +
Sbjct: 206 GSGEEALKLHSQMLKMGMQPDHSTLISVLTACSSLASLQEGRKTHV-LVLKSGYESRISI 264

Query: 91  SNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLF----DNMA 146
            N LI+MY KCGS +D+   F +I   ++ S+N M++ +A  G    A   F     N  
Sbjct: 265 CNALITMYCKCGSILDSELAFRQIDHPDVVSWNAMIAAFARHGFYDRALASFGEMRSNRV 324

Query: 147 ERDVVSWNTMIIGYAKSGAVEEGLKFYK-VLRRFSISCNEFSFAGILTI 194
           E D +++ +++     +G V E L ++  ++  + I      FA ++ I
Sbjct: 325 EPDGITFLSLLSACGHAGKVHESLNWFNSMIESYKIVPRPEHFACLVDI 373


>gi|449443225|ref|XP_004139380.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04750,
           mitochondrial-like [Cucumis sativus]
          Length = 651

 Score =  320 bits (819), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 166/480 (34%), Positives = 281/480 (58%), Gaps = 4/480 (0%)

Query: 123 NNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSIS 182
           N+++  Y + G  + AR LFD M++R+VVS+NTMI+G+AK G +   L+ +  +R   + 
Sbjct: 167 NSLIKRYVDNGCFECARQLFDEMSDRNVVSYNTMILGFAKVGNILGILELFHDMRSHGLE 226

Query: 183 CNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRL 242
            ++F+  G+L +C +L E KL + VH Q+  +   SN+++ ++++D Y KC EL  AR++
Sbjct: 227 PDDFTMLGLLLLCGQLGETKLGKSVHAQIEKSIGSSNLILYNALLDMYVKCNELKLARKV 286

Query: 243 FDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKAL 302
           FD    +D ++W T+++GYAK+G++E A  LFN++P ++ VSW +LI+GY +NG      
Sbjct: 287 FDGPMEKDTVSWNTIIAGYAKVGELELACDLFNQIPTRDIVSWNSLISGYAQNGDYVTVK 346

Query: 303 ELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMY 362
            LFTRM    ++P++ T  + + A A + +L  G+ +HG  ++   +      S+LIDMY
Sbjct: 347 CLFTRMFAENVKPDKVTIVNLISAVAEMGALDQGRWIHGLAVKMLTKIEAFSGSALIDMY 406

Query: 363 SKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITL 422
            KCG +     +F+    K+ +  W TMI+    HG+  +A+ LF  M ++  KP+ +T 
Sbjct: 407 CKCGSIERAFVIFNQIPEKDVTT-WTTMITGFAFHGFGNKALELFSVM-QAETKPNDVTF 464

Query: 423 AVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMP 482
             +L AC+HSGLV EGL  F SM     I P  EH+ CL++LL ++G     +  +EKMP
Sbjct: 465 VSVLAACSHSGLVDEGLKIFSSMKKRYSIEPGVEHYGCLVDLLCRSGRLLDAIGVIEKMP 524

Query: 483 YEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEK 542
            E    +W A+   CR+H N+++  + + +L+   P+    + LLS++Y+  G+    + 
Sbjct: 525 MEPSRSIWGAVLSACRMHRNMELAERALMELLKLEPEKEGGYILLSNVYATCGRWSYSDS 584

Query: 543 VRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQM--GEDAPS 600
           +R+++N R  KK    S + ++  VH F+ S+  HP    + S+L  L  +M    D PS
Sbjct: 585 IREVMNSRGVKKIAGCSSVAVDGMVHDFTASNKQHPRWMDICSILSFLTNEMRLEADVPS 644



 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 97/354 (27%), Positives = 169/354 (47%), Gaps = 40/354 (11%)

Query: 69  KLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSG 128
           KLGK VH  ++     +    L N L+ MY KC     ARKVFD    K+  S+N +++G
Sbjct: 246 KLGKSVHAQIE-KSIGSSNLILYNALLDMYVKCNELKLARKVFDGPMEKDTVSWNTIIAG 304

Query: 129 YANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSF 188
           YA +G ++ A +LF+ +  RD+VSWN++I GYA++G        +  +   ++  ++ + 
Sbjct: 305 YAKVGELELACDLFNQIPTRDIVSWNSLISGYAQNGDYVTVKCLFTRMFAENVKPDKVTI 364

Query: 189 AGILTICVKLEELKLTRQVHGQVLVTGFLSNV--VISSSIVDAYAKCGELSDARRLFDET 246
             +++   ++  L   R +HG  L    L+ +     S+++D Y KCG +  A  +F++ 
Sbjct: 365 VNLISAVAEMGALDQGRWIHG--LAVKMLTKIEAFSGSALIDMYCKCGSIERAFVIFNQI 422

Query: 247 DARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFT 306
             +DV TWTTM++G+A                                +G G KALELF+
Sbjct: 423 PEKDVTTWTTMITGFA-------------------------------FHGFGNKALELFS 451

Query: 307 RMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFL-IRTNFRSNTIVMSSLIDMYSKC 365
            +M    +PN  TF S L AC+    +  G ++   +  R +          L+D+  + 
Sbjct: 452 -VMQAETKPNDVTFVSVLAACSHSGLVDEGLKIFSSMKKRYSIEPGVEHYGCLVDLLCRS 510

Query: 366 GCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDK 419
           G L D   V +    + +  +W  ++SA   H   E A R   ++++  ++P+K
Sbjct: 511 GRLLDAIGVIEKMPMEPSRSIWGAVLSACRMHRNMELAERALMELLK--LEPEK 562


>gi|449528479|ref|XP_004171232.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04750,
           mitochondrial-like [Cucumis sativus]
          Length = 586

 Score =  320 bits (819), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 166/480 (34%), Positives = 281/480 (58%), Gaps = 4/480 (0%)

Query: 123 NNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSIS 182
           N+++  Y + G  + AR LFD M++R+VVS+NTMI+G+AK G +   L+ +  +R   + 
Sbjct: 102 NSLIKRYVDNGCFECARQLFDEMSDRNVVSYNTMILGFAKVGNILGILELFHDMRSHGLE 161

Query: 183 CNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRL 242
            ++F+  G+L +C +L E KL + VH Q+  +   SN+++ ++++D Y KC EL  AR++
Sbjct: 162 PDDFTMLGLLLLCGQLGETKLGKSVHAQIEKSIGSSNLILYNALLDMYVKCNELKLARKV 221

Query: 243 FDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKAL 302
           FD    +D ++W T+++GYAK+G++E A  LFN++P ++ VSW +LI+GY +NG      
Sbjct: 222 FDGPMEKDTVSWNTIIAGYAKVGELELACDLFNQIPTRDIVSWNSLISGYAQNGDYVTVK 281

Query: 303 ELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMY 362
            LFTRM    ++P++ T  + + A A + +L  G+ +HG  ++   +      S+LIDMY
Sbjct: 282 CLFTRMFAENVKPDKVTIVNLISAVAEMGALDQGRWIHGLAVKMLTKIEAFSGSALIDMY 341

Query: 363 SKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITL 422
            KCG +     +F+    K+ +  W TMI+    HG+  +A+ LF  M ++  KP+ +T 
Sbjct: 342 CKCGSIERAFVIFNQIPEKDVTT-WTTMITGFAFHGFGNKALELFSVM-QAETKPNDVTF 399

Query: 423 AVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMP 482
             +L AC+HSGLV EGL  F SM     I P  EH+ CL++LL ++G     +  +EKMP
Sbjct: 400 VSVLAACSHSGLVDEGLKIFSSMKKRYSIEPGVEHYGCLVDLLCRSGRLLDAIGVIEKMP 459

Query: 483 YEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEK 542
            E    +W A+   CR+H N+++  + + +L+   P+    + LLS++Y+  G+    + 
Sbjct: 460 MEPSRSIWGAVLSACRMHRNMELAERALMELLKLEPEKEGGYILLSNVYATCGRWSYSDS 519

Query: 543 VRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQM--GEDAPS 600
           +R+++N R  KK    S + ++  VH F+ S+  HP    + S+L  L  +M    D PS
Sbjct: 520 IREVMNSRGVKKIAGCSSVAVDGMVHDFTASNKQHPRWMDICSILSFLTNEMRLEADVPS 579



 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 97/354 (27%), Positives = 169/354 (47%), Gaps = 40/354 (11%)

Query: 69  KLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSG 128
           KLGK VH  ++     +    L N L+ MY KC     ARKVFD    K+  S+N +++G
Sbjct: 181 KLGKSVHAQIE-KSIGSSNLILYNALLDMYVKCNELKLARKVFDGPMEKDTVSWNTIIAG 239

Query: 129 YANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSF 188
           YA +G ++ A +LF+ +  RD+VSWN++I GYA++G        +  +   ++  ++ + 
Sbjct: 240 YAKVGELELACDLFNQIPTRDIVSWNSLISGYAQNGDYVTVKCLFTRMFAENVKPDKVTI 299

Query: 189 AGILTICVKLEELKLTRQVHGQVLVTGFLSNV--VISSSIVDAYAKCGELSDARRLFDET 246
             +++   ++  L   R +HG  L    L+ +     S+++D Y KCG +  A  +F++ 
Sbjct: 300 VNLISAVAEMGALDQGRWIHG--LAVKMLTKIEAFSGSALIDMYCKCGSIERAFVIFNQI 357

Query: 247 DARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFT 306
             +DV TWTTM++G+A                                +G G KALELF+
Sbjct: 358 PEKDVTTWTTMITGFA-------------------------------FHGFGNKALELFS 386

Query: 307 RMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFL-IRTNFRSNTIVMSSLIDMYSKC 365
            +M    +PN  TF S L AC+    +  G ++   +  R +          L+D+  + 
Sbjct: 387 -VMQAETKPNDVTFVSVLAACSHSGLVDEGLKIFSSMKKRYSIEPGVEHYGCLVDLLCRS 445

Query: 366 GCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDK 419
           G L D   V +    + +  +W  ++SA   H   E A R   ++++  ++P+K
Sbjct: 446 GRLLDAIGVIEKMPMEPSRSIWGAVLSACRMHRNMELAERALMELLK--LEPEK 497


>gi|310656753|gb|ADP02188.1| PPR domain-containing protein [Triticum aestivum]
          Length = 788

 Score =  319 bits (818), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 166/505 (32%), Positives = 286/505 (56%), Gaps = 10/505 (1%)

Query: 90  LSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERD 149
           + N LI++Y + G    ARKVFD++ VK++ S+  +L  Y+  G +  AR + D M ER+
Sbjct: 284 VQNSLITLYLRMGDAAAARKVFDEMDVKDVVSWTALLDVYSESGDLDGARRVLDAMPERN 343

Query: 150 VVSWNTMIIGYAKSGAVEEGLKFYKVLR----RFSISCNEFSFAGILTICVKLEELKLTR 205
            VSW T+I  + + G   E +K Y  +     R +ISC    F+ +L+ C  LE+L+   
Sbjct: 344 EVSWGTLIARHEQRGNAAEAVKLYSQMLADGCRPNISC----FSSVLSACASLEDLRGGA 399

Query: 206 QVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLG 265
           ++H + L  G  +NV +S S++D Y KC +  DA+ +FD    ++++ W ++VSGY+  G
Sbjct: 400 RIHARSLKMGSSTNVFVSCSLIDMYCKCNKCGDAQTIFDTLPQKNIVCWNSLVSGYSYNG 459

Query: 266 DMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLC 325
            M  A  LF +MP +N  SW T+I+GY +N     AL+ F  M+     P + TFSS L 
Sbjct: 460 KMVEAMYLFKKMPARNLASWNTIISGYAQNRQFVDALKSFNAMLASGQVPGEITFSSVLL 519

Query: 326 ACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSM 385
           ACA++ SL  GK  H   I+     +  + ++L DMY+K G L   +++F     + N +
Sbjct: 520 ACANLCSLVTGKMAHAKTIKLGIEESIFIGTALSDMYAKSGDLQSSKRMFYQMPER-NDV 578

Query: 386 LWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESM 445
            W  MI  L ++G+ E++I LF DM+ + + P++ T   +L AC+H GLV++ + YF+ M
Sbjct: 579 TWTAMIQGLAENGFAEESILLFEDMMATGMTPNEHTFLALLFACSHGGLVEQAIHYFDKM 638

Query: 446 THDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDM 505
              LGI P ++H+ C++++LA+AG   +    L K P + ++  W AL   C  + N ++
Sbjct: 639 -QALGISPKEKHYTCMVDVLARAGRLAEAEALLMKTPSKSEANSWAALLSACNTYRNEEI 697

Query: 506 GRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIEN 565
             +   +L +    ++A + LLS++Y++ G+ +   ++R L+     KK+   SW+++  
Sbjct: 698 AERAAKRLHELAKDNTAGYVLLSNMYASCGRWKDAARIRVLMKGTTLKKDGGCSWVQVRG 757

Query: 566 KVHAFSVSDSLHPMRDVLYSVLEQL 590
           + HAF   ++ HP+   +  +L+ L
Sbjct: 758 QYHAFFSWEAKHPLSMEIDEILDLL 782



 Score =  189 bits (479), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 119/439 (27%), Positives = 212/439 (48%), Gaps = 35/439 (7%)

Query: 87  TTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMA 146
           + F  + ++S + K G    AR++FD +P + + SY  M+      G +  A  L++   
Sbjct: 148 SPFAYDFMVSEHVKAGDIASARRLFDGMPDRTVVSYTTMVDALMKRGRVAEAVELYEQCP 207

Query: 147 ERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQ 206
              V  +   I G+ ++      L  ++ +    +  N  +   ++  CV   E  L   
Sbjct: 208 SGSVAFFTATISGFVRNELHHNALGVFRKMLSCRVRPNGITIVCMIKACVGAGEFGLALS 267

Query: 207 VHGQVLVTGFL-SNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLG 265
           + G  + + F  S++ + +S++  Y + G+ + AR++FDE D +DV++WT ++  Y++ G
Sbjct: 268 IVGLAIKSNFFESSIEVQNSLITLYLRMGDAAAARKVFDEMDVKDVVSWTALLDVYSESG 327

Query: 266 DMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLC 325
           D++ A ++ + MPE+N VSW TLIA + + G   +A++L+++M+    RPN   FSS L 
Sbjct: 328 DLDGARRVLDAMPERNEVSWGTLIARHEQRGNAAEAVKLYSQMLADGCRPNISCFSSVLS 387

Query: 326 ACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKE--- 382
           ACAS+  L+ G ++H   ++    +N  V  SLIDMY KC    D + +FD    K    
Sbjct: 388 ACASLEDLRGGARIHARSLKMGSSTNVFVSCSLIDMYCKCNKCGDAQTIFDTLPQKNIVC 447

Query: 383 -NSML--------------------------WNTMISALTQHGYDEQAIRLFHDMVRSSV 415
            NS++                          WNT+IS   Q+     A++ F+ M+ S  
Sbjct: 448 WNSLVSGYSYNGKMVEAMYLFKKMPARNLASWNTIISGYAQNRQFVDALKSFNAMLASGQ 507

Query: 416 KPDKITLAVILNACTH-SGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQL 474
            P +IT + +L AC +   LV   + +  + T  LGI  +      L ++ A++G     
Sbjct: 508 VPGEITFSSVLLACANLCSLVTGKMAH--AKTIKLGIEESIFIGTALSDMYAKSGDLQSS 565

Query: 475 MNQLEKMPYEHDSYLWNAL 493
                +MP E +   W A+
Sbjct: 566 KRMFYQMP-ERNDVTWTAM 583



 Score =  159 bits (401), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 102/392 (26%), Positives = 180/392 (45%), Gaps = 47/392 (11%)

Query: 30  KGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTF 89
           +G  +EA+     +   G R      + +L  CA  + L+ G R+H    L    +   F
Sbjct: 357 RGNAAEAVKLYSQMLADGCRPNISCFSSVLSACASLEDLRGGARIHAR-SLKMGSSTNVF 415

Query: 90  LSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERD 149
           +S  LI MY KC    DA+ +FD +P KN+  +N+++SGY+  G M  A  LF  M  R+
Sbjct: 416 VSCSLIDMYCKCNKCGDAQTIFDTLPQKNIVCWNSLVSGYSYNGKMVEAMYLFKKMPARN 475

Query: 150 VVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHG 209
           + SWNT+I GYA++    + LK +  +        E +F+ +L  C  L  L   +  H 
Sbjct: 476 LASWNTIISGYAQNRQFVDALKSFNAMLASGQVPGEITFSSVLLACANLCSLVTGKMAHA 535

Query: 210 QVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMES 269
           + +  G   ++ I +++ D YAK G+L  ++R+F +   R+ +TWT M+ G A+      
Sbjct: 536 KTIKLGIEESIFIGTALSDMYAKSGDLQSSKRMFYQMPERNDVTWTAMIQGLAE------ 589

Query: 270 ASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACAS 329
                                    NG  ++++ LF  MM   + PN+HTF + L AC+ 
Sbjct: 590 -------------------------NGFAEESILLFEDMMATGMTPNEHTFLALLFACS- 623

Query: 330 IVSLKHG----KQVHGF--LIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKEN 383
                HG    + +H F  +            + ++D+ ++ G L +   +   T +K  
Sbjct: 624 -----HGGLVEQAIHYFDKMQALGISPKEKHYTCMVDVLARAGRLAEAEALLMKTPSKSE 678

Query: 384 SMLWNTMISALTQHGYD---EQAIRLFHDMVR 412
           +  W  ++SA   +  +   E+A +  H++ +
Sbjct: 679 ANSWAALLSACNTYRNEEIAERAAKRLHELAK 710



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 73/297 (24%), Positives = 125/297 (42%), Gaps = 65/297 (21%)

Query: 199 EELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDE---TDARDVLTWT 255
           + L L   +H   + +G  ++  ++S ++  YA     ++  R F +    DA     + 
Sbjct: 94  DRLPLALSLHAHAVRSGVAADRSVASHLLTTYAAFARAAERDRAFGDCVAADAASPFAYD 153

Query: 256 TMVSGYAKLGDMESASKLFNEMPEKNPVSWTTL--------------------------- 288
            MVS + K GD+ SA +LF+ MP++  VS+TT+                           
Sbjct: 154 FMVSEHVKAGDIASARRLFDGMPDRTVVSYTTMVDALMKRGRVAEAVELYEQCPSGSVAF 213

Query: 289 ----IAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLI 344
               I+G+ RN L   AL +F +M+  R+RPN  T    + AC           + G  I
Sbjct: 214 FTATISGFVRNELHHNALGVFRKMLSCRVRPNGITIVCMIKACVGAGEFGLALSIVGLAI 273

Query: 345 RTNFRSNTI-VMSSLIDMYSKCGCLNDGRQVFDLTDNKE--------------------- 382
           ++NF  ++I V +SLI +Y + G     R+VFD  D K+                     
Sbjct: 274 KSNFFESSIEVQNSLITLYLRMGDAAAARKVFDEMDVKDVVSWTALLDVYSESGDLDGAR 333

Query: 383 ---------NSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACT 430
                    N + W T+I+   Q G   +A++L+  M+    +P+    + +L+AC 
Sbjct: 334 RVLDAMPERNEVSWGTLIARHEQRGNAAEAVKLYSQMLADGCRPNISCFSSVLSACA 390


>gi|297736528|emb|CBI25399.3| unnamed protein product [Vitis vinifera]
          Length = 846

 Score =  319 bits (818), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 175/507 (34%), Positives = 265/507 (52%), Gaps = 62/507 (12%)

Query: 94  LISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSW 153
           LI MY KCGS  DAR VFD              + + N G+                  W
Sbjct: 309 LIDMYSKCGSLHDARSVFD--------------TNFINCGVN---------------TPW 339

Query: 154 NTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLV 213
           N MI GY++SG  +E L+ Y  + +  I+ + +++  +       + L+  R VHG VL 
Sbjct: 340 NAMISGYSQSGCSQEALELYVQMCQNGITSDLYTYCSVFNAIAASKSLQFGRVVHGMVLK 399

Query: 214 TGF-LSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASK 272
            G  L  V ++++I DAY+KCG L D R                               K
Sbjct: 400 CGLDLMVVSVNNAIADAYSKCGFLEDVR-------------------------------K 428

Query: 273 LFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVS 332
           +F+ M E++ VSWTTL+  Y+++ LG++AL  F  M      PNQ TFSS L +CAS+  
Sbjct: 429 VFDRMEERDIVSWTTLVTAYSQSSLGEEALATFCLMREEGFAPNQFTFSSVLISCASLCF 488

Query: 333 LKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMIS 392
           L++G+QVHG L +    +   + S+LIDMY+KCG + +  +VFD   N +  + W  +IS
Sbjct: 489 LEYGRQVHGLLCKAGLDTEKCIESALIDMYAKCGSITEAGKVFDKISNPD-IVSWTAIIS 547

Query: 393 ALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGII 452
              QHG  E A++LF  M  S +K + +TL  +L AC+H G+V+EGL YF+ M    G++
Sbjct: 548 GYAQHGLVEDALQLFRRMELSGIKANAVTLLCVLFACSHGGMVEEGLFYFQQMEDGYGVV 607

Query: 453 PNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQ 512
           P  EH+AC+I+LL + G  D  M  + KMP E +  +W  L G CR+HGN+++G     +
Sbjct: 608 PEMEHYACIIDLLGRVGRLDDAMEFIRKMPMEPNEMVWQTLLGGCRVHGNVELGEIAARK 667

Query: 513 LIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSV 572
           ++   P+ SAT+ LLS+ Y   G       +R ++ ++  KKE   SWI ++ +VH F  
Sbjct: 668 ILSIRPEYSATYVLLSNTYIETGSYEDGLSLRNVMKDQGVKKEPGYSWISVKGRVHKFYS 727

Query: 573 SDSLHPMRDVLYSVLEQLAGQMGEDAP 599
            D  HP +  +Y  LE+L  ++    P
Sbjct: 728 GDQQHPQKKEIYVKLEELREKIKAMVP 754



 Score =  178 bits (452), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 115/383 (30%), Positives = 176/383 (45%), Gaps = 64/383 (16%)

Query: 58  ILQQCAESKSLKLGKRVH-LHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPV 116
           +L+ CAE  S++  K VH L LK          L NH   +Y KC               
Sbjct: 70  VLRDCAEKGSIREAKAVHGLVLKSNFEDKDLMVLFNHAAHVYSKCSE------------- 116

Query: 117 KNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVL 176
                              + A  +FD M +R+V SW  MI+G  + G   +G KF+  +
Sbjct: 117 ------------------FRAACGVFDEMPQRNVFSWTVMIVGSTEHGLFFDGFKFFCEM 158

Query: 177 RRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGEL 236
               I  ++F+++ I+  C+ L+ L+L + VH Q+++ GF +++ +S+S+++ YA     
Sbjct: 159 LNSGILPDKFAYSAIIQSCIGLDSLELGKMVHAQIVMRGFATHIFVSTSLLNMYA----- 213

Query: 237 SDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNG 296
                                     KLG +E +  +FN M E N VSW  +I+G T NG
Sbjct: 214 --------------------------KLGSIEDSYWVFNMMTEHNQVSWNAMISGCTSNG 247

Query: 297 LGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMS 356
           L  +A +LF RM      PN +T  S   A   +V +  GK+V           N +V +
Sbjct: 248 LHLEAFDLFVRMKNGACTPNMYTLVSVSKAVGKLVDVNMGKEVQNCASELGIEGNVLVGT 307

Query: 357 SLIDMYSKCGCLNDGRQVFDLT-DNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSV 415
           +LIDMYSKCG L+D R VFD    N   +  WN MIS  +Q G  ++A+ L+  M ++ +
Sbjct: 308 ALIDMYSKCGSLHDARSVFDTNFINCGVNTPWNAMISGYSQSGCSQEALELYVQMCQNGI 367

Query: 416 KPDKITLAVILNACTHSGLVQEG 438
             D  T   + NA   S  +Q G
Sbjct: 368 TSDLYTYCSVFNAIAASKSLQFG 390



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 121/458 (26%), Positives = 199/458 (43%), Gaps = 87/458 (18%)

Query: 3   SNFSPRGINRKNLPNNCLIQSFLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQC 62
           +NF   G+N    P N +I  +      G   EA+     + Q GI     T   +    
Sbjct: 328 TNFINCGVNT---PWNAMISGY---SQSGCSQEALELYVQMCQNGITSDLYTYCSVFNAI 381

Query: 63  AESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSY 122
           A SKSL+ G+ VH                     M  KCG D+             + S 
Sbjct: 382 AASKSLQFGRVVH--------------------GMVLKCGLDL------------MVVSV 409

Query: 123 NNMLS-GYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSI 181
           NN ++  Y+  G ++  R +FD M ERD+VSW T++  Y++S   EE L  + ++R    
Sbjct: 410 NNAIADAYSKCGFLEDVRKVFDRMEERDIVSWTTLVTAYSQSSLGEEALATFCLMREEGF 469

Query: 182 SCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARR 241
           + N+F+F+ +L  C  L  L+  RQVHG +   G  +   I S+++D YAKCG +++A +
Sbjct: 470 APNQFTFSSVLISCASLCFLEYGRQVHGLLCKAGLDTEKCIESALIDMYAKCGSITEAGK 529

Query: 242 LFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKA 301
           +FD+    D+++WT ++SGYA+                               +GL + A
Sbjct: 530 VFDKISNPDIVSWTAIISGYAQ-------------------------------HGLVEDA 558

Query: 302 LELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQV-HGFLIRTNFRSNTIVM----- 355
           L+LF RM +  I+ N  T    L AC+      HG  V  G            V+     
Sbjct: 559 LQLFRRMELSGIKANAVTLLCVLFACS------HGGMVEEGLFYFQQMEDGYGVVPEMEH 612

Query: 356 -SSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSS 414
            + +ID+  + G L+D  +       + N M+W T++     HG  E        ++  S
Sbjct: 613 YACIIDLLGRVGRLDDAMEFIRKMPMEPNEMVWQTLLGGCRVHGNVELGEIAARKIL--S 670

Query: 415 VKPDKITLAVIL-NACTHSGLVQEGLTYFESMTHDLGI 451
           ++P+     V+L N    +G  ++GL+   ++  D G+
Sbjct: 671 IRPEYSATYVLLSNTYIETGSYEDGLS-LRNVMKDQGV 707



 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 107/450 (23%), Positives = 196/450 (43%), Gaps = 69/450 (15%)

Query: 58  ILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVK 117
           I+Q C    SL+LGK VH  + +    T                                
Sbjct: 173 IIQSCIGLDSLELGKMVHAQIVMRGFAT-------------------------------- 200

Query: 118 NLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLR 177
           ++F   ++L+ YA LG ++ +  +F+ M E + VSWN MI G   +G   E    +  ++
Sbjct: 201 HIFVSTSLLNMYAKLGSIEDSYWVFNMMTEHNQVSWNAMISGCTSNGLHLEAFDLFVRMK 260

Query: 178 RFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELS 237
             + + N ++   +     KL ++ + ++V       G   NV++ ++++D Y+KCG L 
Sbjct: 261 NGACTPNMYTLVSVSKAVGKLVDVNMGKEVQNCASELGIEGNVLVGTALIDMYSKCGSLH 320

Query: 238 DARRLFDET--DARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRN 295
           DAR +FD    +      W  M+SG                               Y+++
Sbjct: 321 DARSVFDTNFINCGVNTPWNAMISG-------------------------------YSQS 349

Query: 296 GLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTI-V 354
           G  Q+ALEL+ +M    I  + +T+ S   A A+  SL+ G+ VHG +++       + V
Sbjct: 350 GCSQEALELYVQMCQNGITSDLYTYCSVFNAIAASKSLQFGRVVHGMVLKCGLDLMVVSV 409

Query: 355 MSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSS 414
            +++ D YSKCG L D R+VFD  + ++  + W T+++A +Q    E+A+  F  M    
Sbjct: 410 NNAIADAYSKCGFLEDVRKVFDRMEERD-IVSWTTLVTAYSQSSLGEEALATFCLMREEG 468

Query: 415 VKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQL 474
             P++ T + +L +C     ++ G      +    G+   +   + LI++ A+ G   + 
Sbjct: 469 FAPNQFTFSSVLISCASLCFLEYG-RQVHGLLCKAGLDTEKCIESALIDMYAKCGSITEA 527

Query: 475 MNQLEKMPYEHDSYLWNALHGVCRIHGNID 504
               +K+    D   W A+      HG ++
Sbjct: 528 GKVFDKIS-NPDIVSWTAIISGYAQHGLVE 556



 Score =  102 bits (253), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 75/281 (26%), Positives = 124/281 (44%), Gaps = 35/281 (12%)

Query: 191 ILTICVKLEELKLTRQVHGQVLVTGFLSN--VVISSSIVDAYAKCGELSDARRLFDETDA 248
           +L  C +   ++  + VHG VL + F     +V+ +     Y+KC E   A  +FDE   
Sbjct: 70  VLRDCAEKGSIREAKAVHGLVLKSNFEDKDLMVLFNHAAHVYSKCSEFRAACGVFDEMPQ 129

Query: 249 RDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRM 308
           R+V +WT M                               I G T +GL     + F  M
Sbjct: 130 RNVFSWTVM-------------------------------IVGSTEHGLFFDGFKFFCEM 158

Query: 309 MILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCL 368
           +   I P++  +S+ + +C  + SL+ GK VH  ++   F ++  V +SL++MY+K G +
Sbjct: 159 LNSGILPDKFAYSAIIQSCIGLDSLELGKMVHAQIVMRGFATHIFVSTSLLNMYAKLGSI 218

Query: 369 NDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNA 428
            D   VF++   + N + WN MIS  T +G   +A  LF  M   +  P+  TL  +  A
Sbjct: 219 EDSYWVFNMM-TEHNQVSWNAMISGCTSNGLHLEAFDLFVRMKNGACTPNMYTLVSVSKA 277

Query: 429 CTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAG 469
                 V  G    ++   +LGI  N      LI++ ++ G
Sbjct: 278 VGKLVDVNMG-KEVQNCASELGIEGNVLVGTALIDMYSKCG 317


>gi|242085334|ref|XP_002443092.1| hypothetical protein SORBIDRAFT_08g008260 [Sorghum bicolor]
 gi|241943785|gb|EES16930.1| hypothetical protein SORBIDRAFT_08g008260 [Sorghum bicolor]
          Length = 655

 Score =  319 bits (818), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 168/473 (35%), Positives = 271/473 (57%), Gaps = 9/473 (1%)

Query: 123 NNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSIS 182
           N ++  YA+   +  AR LFD MA+RDVVSW T++ GYA+ G  +E    ++V  R  ++
Sbjct: 170 NALVHMYASSMSLPDARKLFDEMADRDVVSWTTLVDGYARGGLPDEA---WRVFCRMVVA 226

Query: 183 C----NEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSD 238
                NE +     +   ++  L L R VH  V+ +G   +V + +++VD + KCG ++ 
Sbjct: 227 GGGWPNEVTLVAAASAAGQIGLLGLGRMVHQCVVESGVRMSVNLENALVDMFGKCGCVAS 286

Query: 239 ARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLG 298
           A+ +FD    +DV +WT+MVS YAK GD+E+A KLF E+P +N VSW+ ++A Y++  L 
Sbjct: 287 AKEIFDGMPIKDVYSWTSMVSAYAKCGDLENAGKLFKEIPNRNAVSWSCMVAAYSQANLP 346

Query: 299 QKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMS-S 357
           ++A+ +F  M+   + P   T  S L ACA +  L  G+ ++   I ++    T+ +S +
Sbjct: 347 EEAMRIFNDMIAAGVEPIDATLVSVLSACAQLGCLDVGRCLYDAYIVSHKVELTVNLSNA 406

Query: 358 LIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKP 417
            IDM++KCG +    ++F   ++K N + WNTMI A   HG  E+A+ LF       + P
Sbjct: 407 FIDMFAKCGDVGAASRLFRNMEDK-NVVSWNTMIVAHALHGQSEEALHLFQKFKAIGIFP 465

Query: 418 DKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQ 477
           D+IT   +L+AC+HSGLV EG  +F+ M    GI P  EH+AC+I+LL + G  ++    
Sbjct: 466 DEITYIGVLSACSHSGLVSEGRYHFKEMKIVYGIEPRAEHYACMIDLLGKVGLLEEAFEV 525

Query: 478 LEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKG 537
              MP   D   W AL   CR+HGN+++G+   D+L+  +P  S  + L+S IY++  K 
Sbjct: 526 ARSMPVGADEAGWGALLNACRMHGNVEIGKCAADKLVGLDPSDSGIYVLMSQIYASKSKW 585

Query: 538 RLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQL 590
             V+ +R ++ +R  KK    S IE++ K H F  +D  H   + +Y+ LE +
Sbjct: 586 GQVKMIRTVMRDRGVKKNPGCSSIEVDGKFHEFLAADVSHAHSEDIYAALENI 638



 Score =  128 bits (321), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 84/339 (24%), Positives = 161/339 (47%), Gaps = 46/339 (13%)

Query: 68  LKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLS 127
           L LG+ VH  +  +  +     L N L+ M+ KCG    A+++FD +P+K+++S+ +M+S
Sbjct: 249 LGLGRMVHQCVVESGVRMSVN-LENALVDMFGKCGCVASAKEIFDGMPIKDVYSWTSMVS 307

Query: 128 GYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFS 187
            YA  G +++A  LF  +  R+ VSW+ M+  Y+++   EE ++ +  +    +   + +
Sbjct: 308 AYAKCGDLENAGKLFKEIPNRNAVSWSCMVAAYSQANLPEEAMRIFNDMIAAGVEPIDAT 367

Query: 188 FAGILTICVKLEELKLTRQVHGQVLVTGFLS-NVVISSSIVDAYAKCGELSDARRLFDET 246
              +L+ C +L  L + R ++   +V+  +   V +S++ +D +AKCG++  A RLF   
Sbjct: 368 LVSVLSACAQLGCLDVGRCLYDAYIVSHKVELTVNLSNAFIDMFAKCGDVGAASRLFRNM 427

Query: 247 DARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFT 306
           + ++V++W TM+  +A                                +G  ++AL LF 
Sbjct: 428 EDKNVVSWNTMIVAHA-------------------------------LHGQSEEALHLFQ 456

Query: 307 RMMILRIRPNQHTFSSCLCAC--ASIVS-----LKHGKQVHGFLIRTNFRSNTIVMSSLI 359
           +   + I P++ T+   L AC  + +VS      K  K V+G   R          + +I
Sbjct: 457 KFKAIGIFPDEITYIGVLSACSHSGLVSEGRYHFKEMKIVYGIEPRAEH------YACMI 510

Query: 360 DMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHG 398
           D+  K G L +  +V        +   W  +++A   HG
Sbjct: 511 DLLGKVGLLEEAFEVARSMPVGADEAGWGALLNACRMHG 549



 Score =  123 bits (308), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 107/467 (22%), Positives = 202/467 (43%), Gaps = 84/467 (17%)

Query: 155 TMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVT 214
           TM+ G+ ++G     L  ++ + R  +  +  +   +  +            +H      
Sbjct: 102 TMMRGFLRAGKPAHALALFRRVLRDRLPADARTI--VFAVKAATTSSSPAEAIHCVAFKR 159

Query: 215 GFLS-NVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKL 273
           GF+  +V++ +++V  YA    L DAR+LFDE   RDV++WTT+V GYA           
Sbjct: 160 GFIGQSVLVGNALVHMYASSMSLPDARKLFDEMADRDVVSWTTLVDGYA----------- 208

Query: 274 FNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIR-PNQHTFSSCLCACASIVS 332
                               R GL  +A  +F RM++     PN+ T  +   A   I  
Sbjct: 209 --------------------RGGLPDEAWRVFCRMVVAGGGWPNEVTLVAAASAAGQIGL 248

Query: 333 LKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKE---------- 382
           L  G+ VH  ++ +  R +  + ++L+DM+ KCGC+   +++FD    K+          
Sbjct: 249 LGLGRMVHQCVVESGVRMSVNLENALVDMFGKCGCVASAKEIFDGMPIKDVYSWTSMVSA 308

Query: 383 --------------------NSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITL 422
                               N++ W+ M++A +Q    E+A+R+F+DM+ + V+P   TL
Sbjct: 309 YAKCGDLENAGKLFKEIPNRNAVSWSCMVAAYSQANLPEEAMRIFNDMIAAGVEPIDATL 368

Query: 423 AVILNACTHSGLVQEGLTYFES--MTHDLGIIPNQEHHACLIELLAQ---AGCSDQLMNQ 477
             +L+AC   G +  G   +++  ++H + +  N  +    I++ A+    G + +L   
Sbjct: 369 VSVLSACAQLGCLDVGRCLYDAYIVSHKVELTVNLSN--AFIDMFAKCGDVGAASRLFRN 426

Query: 478 LEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQL--IDQNPQSSATHGLLSSI-YSAL 534
           +E    + +   WN +     +HG  +    +  +   I   P      G+LS+  +S L
Sbjct: 427 ME----DKNVVSWNTMIVAHALHGQSEEALHLFQKFKAIGIFPDEITYIGVLSACSHSGL 482

Query: 535 -GKGRLVEKVRQLINERQFKKEQAISWIEIENKV----HAFSVSDSL 576
             +GR   K  +++   + + E     I++  KV     AF V+ S+
Sbjct: 483 VSEGRYHFKEMKIVYGIEPRAEHYACMIDLLGKVGLLEEAFEVARSM 529



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 43/172 (25%), Positives = 82/172 (47%), Gaps = 9/172 (5%)

Query: 11  NRKNLPNNCLIQSFLSLISKGQL-SEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLK 69
           NR  +  +C++ ++    S+  L  EA+   + +   G+     TL  +L  CA+   L 
Sbjct: 327 NRNAVSWSCMVAAY----SQANLPEEAMRIFNDMIAAGVEPIDATLVSVLSACAQLGCLD 382

Query: 70  LGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGY 129
           +G+ ++    ++ +   T  LSN  I M+ KCG    A ++F  +  KN+ S+N M+  +
Sbjct: 383 VGRCLYDAYIVSHKVELTVNLSNAFIDMFAKCGDVGAASRLFRNMEDKNVVSWNTMIVAH 442

Query: 130 ANLGMMKHARNLFDNMAE----RDVVSWNTMIIGYAKSGAVEEGLKFYKVLR 177
           A  G  + A +LF          D +++  ++   + SG V EG   +K ++
Sbjct: 443 ALHGQSEEALHLFQKFKAIGIFPDEITYIGVLSACSHSGLVSEGRYHFKEMK 494


>gi|356555301|ref|XP_003545972.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Glycine max]
          Length = 858

 Score =  319 bits (818), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 176/556 (31%), Positives = 292/556 (52%), Gaps = 64/556 (11%)

Query: 36  AISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLI 95
           A+  LD +   G R    TL+  L+ CA     +LG+++H  L +        F +  L+
Sbjct: 268 ALMLLDEMKGSGTRPNMFTLSSALKACAAMGFKELGRQLHSSL-IKMDAHSDLFAAVGLV 326

Query: 96  SMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNT 155
            MY KC                                MM  AR  +D+M ++D+++WN 
Sbjct: 327 DMYSKCE-------------------------------MMDDARRAYDSMPKKDIIAWNA 355

Query: 156 MIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTG 215
           +I GY++ G   + +  +  +    I  N+ + + +L     L+ +K+ +Q+H   + +G
Sbjct: 356 LISGYSQCGDHLDAVSLFSKMFSEDIDFNQTTLSTVLKSVASLQAIKVCKQIHTISIKSG 415

Query: 216 FLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFN 275
             S+  + +S++D Y KC  +                               + ASK+F 
Sbjct: 416 IYSDFYVINSLLDTYGKCNHI-------------------------------DEASKIFE 444

Query: 276 EMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKH 335
           E   ++ V++T++I  Y++ G G++AL+L+ +M    I+P+    SS L ACA++ + + 
Sbjct: 445 ERTWEDLVAYTSMITAYSQYGDGEEALKLYLQMQDADIKPDPFICSSLLNACANLSAYEQ 504

Query: 336 GKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALT 395
           GKQ+H   I+  F  +    +SL++MY+KCG + D  + F    N+   + W+ MI    
Sbjct: 505 GKQLHVHAIKFGFMCDIFASNSLVNMYAKCGSIEDADRAFSEIPNR-GIVSWSAMIGGYA 563

Query: 396 QHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQ 455
           QHG+ ++A+RLF+ M+R  V P+ ITL  +L AC H+GLV EG  YFE M    GI P Q
Sbjct: 564 QHGHGKEALRLFNQMLRDGVPPNHITLVSVLCACNHAGLVNEGKQYFEKMEVMFGIKPTQ 623

Query: 456 EHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLID 515
           EH+AC+I+LL ++G  ++ +  +  +P+E D ++W AL G  RIH NI++G+K    L D
Sbjct: 624 EHYACMIDLLGRSGKLNEAVELVNSIPFEADGFVWGALLGAARIHKNIELGQKAAKMLFD 683

Query: 516 QNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDS 575
             P+ S TH LL++IY++ G    V KVR+ + + + KKE  +SWIEI++KV+ F V D 
Sbjct: 684 LEPEKSGTHVLLANIYASAGMWENVAKVRKFMKDSKVKKEPGMSWIEIKDKVYTFIVGDR 743

Query: 576 LHPMRDVLYSVLEQLA 591
            H   D +Y+ L+QL 
Sbjct: 744 SHSRSDEIYAKLDQLG 759



 Score =  167 bits (423), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 118/417 (28%), Positives = 204/417 (48%), Gaps = 46/417 (11%)

Query: 123 NNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSIS 182
           N++++ Y+      +AR L D  +E DVVSW++++ GY ++G VEE L  +  +    + 
Sbjct: 20  NHLVTLYSKCRRFGYARKLVDESSELDVVSWSSLLSGYVQNGFVEEALLVFNEMCLLGVK 79

Query: 183 CNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRL 242
           CNEF+F  +L  C    +L + R+VHG  +VTGF S+  +++++V  YAKCG L D+RRL
Sbjct: 80  CNEFTFPSVLKACSMKRDLNMGRKVHGMAVVTGFESDGFVANTLVVMYAKCGLLDDSRRL 139

Query: 243 FDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKAL 302
           F     R+V++W  + S Y +       S+L  E                        A+
Sbjct: 140 FGGIVERNVVSWNALFSCYVQ-------SELCGE------------------------AV 168

Query: 303 ELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMY 362
            LF  M+   I PN+ + S  L ACA +     G+++HG +++     +    ++L+DMY
Sbjct: 169 GLFKEMVRSGIMPNEFSISIILNACAGLQEGDLGRKIHGLMLKMGLDLDQFSANALVDMY 228

Query: 363 SKCGCLNDGRQVF-DLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKIT 421
           SK G +     VF D+     + + WN +I+    H  ++ A+ L  +M  S  +P+  T
Sbjct: 229 SKAGEIEGAVAVFQDIA--HPDVVSWNAIIAGCVLHDCNDLALMLLDEMKGSGTRPNMFT 286

Query: 422 LAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHAC--LIELLAQAGCSDQLMNQLE 479
           L+  L AC   G  + G     S+   + +  + +  A   L+++ ++    D      +
Sbjct: 287 LSSALKACAAMGFKELGRQLHSSL---IKMDAHSDLFAAVGLVDMYSKCEMMDDARRAYD 343

Query: 480 KMPYEHDSYLWNAL---HGVCRIHGN-IDMGRKVVDQLIDQNPQSSATHGLLSSIYS 532
            MP + D   WNAL   +  C  H + + +  K+  + ID N  + +T  +L S+ S
Sbjct: 344 SMP-KKDIIAWNALISGYSQCGDHLDAVSLFSKMFSEDIDFNQTTLST--VLKSVAS 397



 Score =  161 bits (407), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 109/401 (27%), Positives = 183/401 (45%), Gaps = 64/401 (15%)

Query: 28  ISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPT 87
           +  G + EA+   + +   G++    T   +L+ C+  + L +G++VH    +T  ++  
Sbjct: 58  VQNGFVEEALLVFNEMCLLGVKCNEFTFPSVLKACSMKRDLNMGRKVHGMAVVTGFES-D 116

Query: 88  TFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAE 147
            F++N L+ MY KC                               G++  +R LF  + E
Sbjct: 117 GFVANTLVVMYAKC-------------------------------GLLDDSRRLFGGIVE 145

Query: 148 RDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQV 207
           R+VVSWN +   Y +S    E +  +K + R  I  NEFS + IL  C  L+E  L R++
Sbjct: 146 RNVVSWNALFSCYVQSELCGEAVGLFKEMVRSGIMPNEFSISIILNACAGLQEGDLGRKI 205

Query: 208 HGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDM 267
           HG +L  G   +   ++++VD Y+K GE+  A  +F +    DV++W             
Sbjct: 206 HGLMLKMGLDLDQFSANALVDMYSKAGEIEGAVAVFQDIAHPDVVSW------------- 252

Query: 268 ESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCAC 327
                               +IAG   +     AL L   M     RPN  T SS L AC
Sbjct: 253 ------------------NAIIAGCVLHDCNDLALMLLDEMKGSGTRPNMFTLSSALKAC 294

Query: 328 ASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLW 387
           A++   + G+Q+H  LI+ +  S+      L+DMYSKC  ++D R+ +D +  K++ + W
Sbjct: 295 AAMGFKELGRQLHSSLIKMDAHSDLFAAVGLVDMYSKCEMMDDARRAYD-SMPKKDIIAW 353

Query: 388 NTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNA 428
           N +IS  +Q G    A+ LF  M    +  ++ TL+ +L +
Sbjct: 354 NALISGYSQCGDHLDAVSLFSKMFSEDIDFNQTTLSTVLKS 394



 Score =  141 bits (356), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 90/289 (31%), Positives = 159/289 (55%), Gaps = 12/289 (4%)

Query: 248 ARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTR 307
           +RD      +V+ Y+K      A KL +E  E + VSW++L++GY +NG  ++AL +F  
Sbjct: 13  SRDPSLRNHLVTLYSKCRRFGYARKLVDESSELDVVSWSSLLSGYVQNGFVEEALLVFNE 72

Query: 308 MMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGC 367
           M +L ++ N+ TF S L AC+    L  G++VHG  + T F S+  V ++L+ MY+KCG 
Sbjct: 73  MCLLGVKCNEFTFPSVLKACSMKRDLNMGRKVHGMAVVTGFESDGFVANTLVVMYAKCGL 132

Query: 368 LNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILN 427
           L+D R++F     + N + WN + S   Q     +A+ LF +MVRS + P++ ++++ILN
Sbjct: 133 LDDSRRLFGGIVER-NVVSWNALFSCYVQSELCGEAVGLFKEMVRSGIMPNEFSISIILN 191

Query: 428 ACTHSGLVQEG--LTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEH 485
           AC  +GL QEG        +   +G+  +Q     L+++ ++AG  +  +   + + +  
Sbjct: 192 AC--AGL-QEGDLGRKIHGLMLKMGLDLDQFSANALVDMYSKAGEIEGAVAVFQDIAHP- 247

Query: 486 DSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSAL 534
           D   WNA+   C +H   D+   ++D++     + S T   + ++ SAL
Sbjct: 248 DVVSWNAIIAGCVLHDCNDLALMLLDEM-----KGSGTRPNMFTLSSAL 291



 Score =  115 bits (289), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 91/400 (22%), Positives = 170/400 (42%), Gaps = 72/400 (18%)

Query: 31  GQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFL 90
           G   +A+S    +    I     TL+ +L+  A  +++K+ K++H  + +        ++
Sbjct: 364 GDHLDAVSLFSKMFSEDIDFNQTTLSTVLKSVASLQAIKVCKQIHT-ISIKSGIYSDFYV 422

Query: 91  SNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDV 150
            N L+  Y KC    +A K+F++   ++L +Y +M++ Y                     
Sbjct: 423 INSLLDTYGKCNHIDEASKIFEERTWEDLVAYTSMITAY--------------------- 461

Query: 151 VSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQ 210
                     ++ G  EE LK Y  ++   I  + F  + +L  C  L   +  +Q+H  
Sbjct: 462 ----------SQYGDGEEALKLYLQMQDADIKPDPFICSSLLNACANLSAYEQGKQLHVH 511

Query: 211 VLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESA 270
            +  GF+ ++  S+S+V+ YAKCG + DA R F E   R +++W+ M+ GYA+ G  + A
Sbjct: 512 AIKFGFMCDIFASNSLVNMYAKCGSIEDADRAFSEIPNRGIVSWSAMIGGYAQHGHGKEA 571

Query: 271 SKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASI 330
            +LFN+M                R+G                + PN  T  S LCAC   
Sbjct: 572 LRLFNQM---------------LRDG----------------VPPNHITLVSVLCACNHA 600

Query: 331 VSLKHGKQ-VHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNT 389
             +  GKQ      +    +      + +ID+  + G LN+  ++ +    + +  +W  
Sbjct: 601 GLVNEGKQYFEKMEVMFGIKPTQEHYACMIDLLGRSGKLNEAVELVNSIPFEADGFVWGA 660

Query: 390 MISALTQHGYDE---QAIRLFHDMVRSSVKPDKITLAVIL 426
           ++ A   H   E   +A ++  D+     +P+K    V+L
Sbjct: 661 LLGAARIHKNIELGQKAAKMLFDL-----EPEKSGTHVLL 695



 Score = 52.8 bits (125), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 40/161 (24%), Positives = 77/161 (47%), Gaps = 13/161 (8%)

Query: 338 QVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQH 397
           ++H  LI+  F  +  + + L+ +YSKC      R++ D   ++ + + W++++S   Q+
Sbjct: 2   ELHAHLIKFGFSRDPSLRNHLVTLYSKCRRFGYARKLVD-ESSELDVVSWSSLLSGYVQN 60

Query: 398 GYDEQAIRLFHDMVRSSVKPDKITLAVILNACT-----HSGLVQEGLTYFESMTHDLGII 452
           G+ E+A+ +F++M    VK ++ T   +L AC+     + G    G+        D G +
Sbjct: 61  GFVEEALLVFNEMCLLGVKCNEFTFPSVLKACSMKRDLNMGRKVHGMAVVTGFESD-GFV 119

Query: 453 PNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNAL 493
            N      L+ + A+ G  D    +L     E +   WNAL
Sbjct: 120 ANT-----LVVMYAKCGLLDD-SRRLFGGIVERNVVSWNAL 154


>gi|218193589|gb|EEC76016.1| hypothetical protein OsI_13171 [Oryza sativa Indica Group]
          Length = 950

 Score =  319 bits (817), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 164/479 (34%), Positives = 282/479 (58%), Gaps = 10/479 (2%)

Query: 92  NHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVV 151
           N LI++Y + G    AR++FD++ V+++ S+  +L  YA LG ++ AR + D M ER+ V
Sbjct: 285 NSLITLYLRKGDADAARRMFDEMEVRDVVSWTALLDVYAELGDLEGARRVLDEMPERNEV 344

Query: 152 SWNTMIIGYAKSGAVEEGLKFYKVLR----RFSISCNEFSFAGILTICVKLEELKLTRQV 207
           SW T++  + + G  +E +  Y  +     R +ISC    F+ +L  C  L++L+  R++
Sbjct: 345 SWGTLVARHEQKGNAKEAVSLYSQMLADGCRPNISC----FSSVLGACASLQDLRSGRKI 400

Query: 208 HGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDM 267
           H Q L     +NV +SS+++D Y KC +L DA+ +F     ++++ W +++SGY+    M
Sbjct: 401 HNQTLKMACSNNVFVSSALIDMYCKCKQLPDAQMIFYSLPQKNIVCWNSLISGYSNNSKM 460

Query: 268 ESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCAC 327
             A +LF +MP +N  SW ++I+GY +N     AL+ F  M+     P + TFSS L AC
Sbjct: 461 VEAEELFKKMPARNVASWNSIISGYAQNRQFIDALKSFHAMLASGQSPGEITFSSVLLAC 520

Query: 328 ASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLW 387
           AS+ SL+ GK VH  +I+   + +  V ++L DMY+K G L+  ++VF     K N + W
Sbjct: 521 ASLCSLEMGKMVHAKIIKLGIKESIFVGTALSDMYAKSGDLDSSKRVF-YEMPKRNDVAW 579

Query: 388 NTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTH 447
             MI  L ++G+ E++I LF DM+ + + P++ T   IL AC+HSGLV+  + YFE M  
Sbjct: 580 TAMIQGLAENGFAEESILLFEDMISAGITPNEQTFLAILFACSHSGLVEHAMHYFE-MMQ 638

Query: 448 DLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGR 507
             GI P  +H+ C++++LA+AG   +  + L K+  + ++  W AL   C I+ N +MG 
Sbjct: 639 ACGISPKAKHYTCMVDVLARAGHLAEAEDLLLKIESKSEANSWAALLSACNIYRNKEMGE 698

Query: 508 KVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENK 566
           +   +L + +  ++A + LLS++Y++ GK +   ++R L+     KK+   SW++I ++
Sbjct: 699 RAAKRLQELDKDNTAGYVLLSNMYASCGKWKDAAEMRILMKGINLKKDGGCSWVQIRDE 757



 Score =  201 bits (510), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 126/442 (28%), Positives = 217/442 (49%), Gaps = 41/442 (9%)

Query: 87  TTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMA 146
           + F  + ++  + K G  V AR++FD +P +++ SY  M+      G ++ A  L+    
Sbjct: 147 SPFAYDFMVREHVKAGDIVSARRLFDGMPERSVVSYTTMVDALMKRGSVRDAVELYRQCP 206

Query: 147 ERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQ 206
              V  +  MI G+  +   ++ L  +  +    +S NE +   ++  C+   E  L   
Sbjct: 207 LCSVPFFTAMIAGFVLNELPKDALGVFHEMLSCGVSPNEITLVSVIKACIGAGEFDLAMS 266

Query: 207 VHGQVLVTGFL-SNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLG 265
           + G  + +  L  N+ + +S++  Y + G+   ARR+FDE + RDV++WT ++  YA+LG
Sbjct: 267 IVGLAMKSNLLDKNLGVRNSLITLYLRKGDADAARRMFDEMEVRDVVSWTALLDVYAELG 326

Query: 266 DMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLC 325
           D+E A ++ +EMPE+N VSW TL+A + + G  ++A+ L+++M+    RPN   FSS L 
Sbjct: 327 DLEGARRVLDEMPERNEVSWGTLVARHEQKGNAKEAVSLYSQMLADGCRPNISCFSSVLG 386

Query: 326 ACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKE--- 382
           ACAS+  L+ G+++H   ++    +N  V S+LIDMY KC  L D + +F     K    
Sbjct: 387 ACASLQDLRSGRKIHNQTLKMACSNNVFVSSALIDMYCKCKQLPDAQMIFYSLPQKNIVC 446

Query: 383 -NSML--------------------------WNTMISALTQHGYDEQAIRLFHDMVRSSV 415
            NS++                          WN++IS   Q+     A++ FH M+ S  
Sbjct: 447 WNSLISGYSNNSKMVEAEELFKKMPARNVASWNSIISGYAQNRQFIDALKSFHAMLASGQ 506

Query: 416 KPDKITLAVILNACTHSGLVQEGLTYFESMTH----DLGIIPNQEHHACLIELLAQAGCS 471
            P +IT + +L AC     ++ G      M H     LGI  +      L ++ A++G  
Sbjct: 507 SPGEITFSSVLLACASLCSLEMG-----KMVHAKIIKLGIKESIFVGTALSDMYAKSGDL 561

Query: 472 DQLMNQLEKMPYEHDSYLWNAL 493
           D       +MP  +D   W A+
Sbjct: 562 DSSKRVFYEMPKRND-VAWTAM 582


>gi|62733531|gb|AAX95648.1| Tetratricopeptide repeat, putative [Oryza sativa Japonica Group]
          Length = 888

 Score =  319 bits (817), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 164/479 (34%), Positives = 282/479 (58%), Gaps = 10/479 (2%)

Query: 92  NHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVV 151
           N LI++Y + G    AR++FD++ V+++ S+  +L  YA LG ++ AR + D M ER+ V
Sbjct: 285 NSLITLYLRKGDADAARRMFDEMEVRDVVSWTALLDVYAELGDLEGARRVLDEMPERNEV 344

Query: 152 SWNTMIIGYAKSGAVEEGLKFYKVLR----RFSISCNEFSFAGILTICVKLEELKLTRQV 207
           SW T++  + + G  +E +  Y  +     R +ISC    F+ +L  C  L++L+  R++
Sbjct: 345 SWGTLVARHEQKGNAKEAVSLYSQMLADGCRPNISC----FSSVLGACASLQDLRSGRKI 400

Query: 208 HGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDM 267
           H Q L     +NV +SS+++D Y KC +L DA+ +F     ++++ W +++SGY+    M
Sbjct: 401 HNQTLKMACSNNVFVSSALIDMYCKCKQLPDAQMIFYSLPQKNIVCWNSLISGYSNNSKM 460

Query: 268 ESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCAC 327
             A +LF +MP +N  SW ++I+GY +N     AL+ F  M+     P + TFSS L AC
Sbjct: 461 VEAEELFKKMPARNVASWNSIISGYAQNRQFIDALKSFHAMLASGQSPGEITFSSVLLAC 520

Query: 328 ASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLW 387
           AS+ SL+ GK VH  +I+   + +  V ++L DMY+K G L+  ++VF     K N + W
Sbjct: 521 ASLCSLEMGKMVHAKIIKLGIKESIFVGTALSDMYAKSGDLDSSKRVF-YEMPKRNDVAW 579

Query: 388 NTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTH 447
             MI  L ++G+ E++I LF DM+ + + P++ T   IL AC+HSGLV+  + YFE M  
Sbjct: 580 TAMIQGLAENGFAEESILLFEDMISAGITPNEQTFLAILFACSHSGLVEHAMHYFE-MMQ 638

Query: 448 DLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGR 507
             GI P  +H+ C++++LA+AG   +  + L K+  + ++  W AL   C I+ N +MG 
Sbjct: 639 ACGISPKAKHYTCMVDVLARAGHLAEAEDLLLKIESKSEANSWAALLSACNIYRNKEMGE 698

Query: 508 KVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENK 566
           +   +L + +  ++A + LLS++Y++ GK +   ++R L+     KK+   SW++I ++
Sbjct: 699 RAAKRLQELDKDNTAGYVLLSNMYASCGKWKDAAEMRILMKGINLKKDGGCSWVQIRDE 757



 Score =  200 bits (509), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 126/442 (28%), Positives = 217/442 (49%), Gaps = 41/442 (9%)

Query: 87  TTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMA 146
           + F  + ++  + K G  V AR++FD +P +++ SY  M+      G ++ A  L+    
Sbjct: 147 SPFAYDFMVREHVKAGDIVSARRLFDGMPERSVVSYTTMVDALMKRGSVRDAVELYRQCP 206

Query: 147 ERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQ 206
              V  +  MI G+  +   ++ L  +  +    +S NE +   ++  C+   E  L   
Sbjct: 207 LCSVPFFTAMIAGFVLNELPKDALGVFHEMLSCGVSPNEITLVSVIKACIGAGEFDLAMS 266

Query: 207 VHGQVLVTGFL-SNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLG 265
           + G  + +  L  N+ + +S++  Y + G+   ARR+FDE + RDV++WT ++  YA+LG
Sbjct: 267 IVGLAMKSNLLDKNLGVRNSLITLYLRKGDADAARRMFDEMEVRDVVSWTALLDVYAELG 326

Query: 266 DMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLC 325
           D+E A ++ +EMPE+N VSW TL+A + + G  ++A+ L+++M+    RPN   FSS L 
Sbjct: 327 DLEGARRVLDEMPERNEVSWGTLVARHEQKGNAKEAVSLYSQMLADGCRPNISCFSSVLG 386

Query: 326 ACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKE--- 382
           ACAS+  L+ G+++H   ++    +N  V S+LIDMY KC  L D + +F     K    
Sbjct: 387 ACASLQDLRSGRKIHNQTLKMACSNNVFVSSALIDMYCKCKQLPDAQMIFYSLPQKNIVC 446

Query: 383 -NSML--------------------------WNTMISALTQHGYDEQAIRLFHDMVRSSV 415
            NS++                          WN++IS   Q+     A++ FH M+ S  
Sbjct: 447 WNSLISGYSNNSKMVEAEELFKKMPARNVASWNSIISGYAQNRQFIDALKSFHAMLASGQ 506

Query: 416 KPDKITLAVILNACTHSGLVQEGLTYFESMTH----DLGIIPNQEHHACLIELLAQAGCS 471
            P +IT + +L AC     ++ G      M H     LGI  +      L ++ A++G  
Sbjct: 507 SPGEITFSSVLLACASLCSLEMG-----KMVHAKIIKLGIKESIFVGTALSDMYAKSGDL 561

Query: 472 DQLMNQLEKMPYEHDSYLWNAL 493
           D       +MP  +D   W A+
Sbjct: 562 DSSKRVFYEMPKRND-VAWTAM 582


>gi|222625627|gb|EEE59759.1| hypothetical protein OsJ_12247 [Oryza sativa Japonica Group]
          Length = 950

 Score =  319 bits (817), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 164/479 (34%), Positives = 282/479 (58%), Gaps = 10/479 (2%)

Query: 92  NHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVV 151
           N LI++Y + G    AR++FD++ V+++ S+  +L  YA LG ++ AR + D M ER+ V
Sbjct: 285 NSLITLYLRKGDADAARRMFDEMEVRDVVSWTALLDVYAELGDLEGARRVLDEMPERNEV 344

Query: 152 SWNTMIIGYAKSGAVEEGLKFYKVLR----RFSISCNEFSFAGILTICVKLEELKLTRQV 207
           SW T++  + + G  +E +  Y  +     R +ISC    F+ +L  C  L++L+  R++
Sbjct: 345 SWGTLVARHEQKGNAKEAVSLYSQMLADGCRPNISC----FSSVLGACASLQDLRSGRKI 400

Query: 208 HGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDM 267
           H Q L     +NV +SS+++D Y KC +L DA+ +F     ++++ W +++SGY+    M
Sbjct: 401 HNQTLKMACSNNVFVSSALIDMYCKCKQLPDAQMIFYSLPQKNIVCWNSLISGYSNNSKM 460

Query: 268 ESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCAC 327
             A +LF +MP +N  SW ++I+GY +N     AL+ F  M+     P + TFSS L AC
Sbjct: 461 VEAEELFKKMPARNVASWNSIISGYAQNRQFIDALKSFHAMLASGQSPGEITFSSVLLAC 520

Query: 328 ASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLW 387
           AS+ SL+ GK VH  +I+   + +  V ++L DMY+K G L+  ++VF     K N + W
Sbjct: 521 ASLCSLEMGKMVHAKIIKLGIKESIFVGTALSDMYAKSGDLDSSKRVF-YEMPKRNDVAW 579

Query: 388 NTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTH 447
             MI  L ++G+ E++I LF DM+ + + P++ T   IL AC+HSGLV+  + YFE M  
Sbjct: 580 TAMIQGLAENGFAEESILLFEDMISAGITPNEQTFLAILFACSHSGLVEHAMHYFE-MMQ 638

Query: 448 DLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGR 507
             GI P  +H+ C++++LA+AG   +  + L K+  + ++  W AL   C I+ N +MG 
Sbjct: 639 ACGISPKAKHYTCMVDVLARAGHLAEAEDLLLKIESKSEANSWAALLSACNIYRNKEMGE 698

Query: 508 KVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENK 566
           +   +L + +  ++A + LLS++Y++ GK +   ++R L+     KK+   SW++I ++
Sbjct: 699 RAAKRLQELDKDNTAGYVLLSNMYASCGKWKDAAEMRILMKGINLKKDGGCSWVQIRDE 757



 Score =  200 bits (509), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 126/442 (28%), Positives = 217/442 (49%), Gaps = 41/442 (9%)

Query: 87  TTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMA 146
           + F  + ++  + K G  V AR++FD +P +++ SY  M+      G ++ A  L+    
Sbjct: 147 SPFAYDFMVREHVKAGDIVSARRLFDGMPERSVVSYTTMVDALMKRGSVRDAVELYRQCP 206

Query: 147 ERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQ 206
              V  +  MI G+  +   ++ L  +  +    +S NE +   ++  C+   E  L   
Sbjct: 207 LCSVPFFTAMIAGFVLNELPKDALGVFHEMLSCGVSPNEITLVSVIKACIGAGEFDLAMS 266

Query: 207 VHGQVLVTGFL-SNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLG 265
           + G  + +  L  N+ + +S++  Y + G+   ARR+FDE + RDV++WT ++  YA+LG
Sbjct: 267 IVGLAMKSNLLDKNLGVRNSLITLYLRKGDADAARRMFDEMEVRDVVSWTALLDVYAELG 326

Query: 266 DMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLC 325
           D+E A ++ +EMPE+N VSW TL+A + + G  ++A+ L+++M+    RPN   FSS L 
Sbjct: 327 DLEGARRVLDEMPERNEVSWGTLVARHEQKGNAKEAVSLYSQMLADGCRPNISCFSSVLG 386

Query: 326 ACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKE--- 382
           ACAS+  L+ G+++H   ++    +N  V S+LIDMY KC  L D + +F     K    
Sbjct: 387 ACASLQDLRSGRKIHNQTLKMACSNNVFVSSALIDMYCKCKQLPDAQMIFYSLPQKNIVC 446

Query: 383 -NSML--------------------------WNTMISALTQHGYDEQAIRLFHDMVRSSV 415
            NS++                          WN++IS   Q+     A++ FH M+ S  
Sbjct: 447 WNSLISGYSNNSKMVEAEELFKKMPARNVASWNSIISGYAQNRQFIDALKSFHAMLASGQ 506

Query: 416 KPDKITLAVILNACTHSGLVQEGLTYFESMTH----DLGIIPNQEHHACLIELLAQAGCS 471
            P +IT + +L AC     ++ G      M H     LGI  +      L ++ A++G  
Sbjct: 507 SPGEITFSSVLLACASLCSLEMG-----KMVHAKIIKLGIKESIFVGTALSDMYAKSGDL 561

Query: 472 DQLMNQLEKMPYEHDSYLWNAL 493
           D       +MP  +D   W A+
Sbjct: 562 DSSKRVFYEMPKRND-VAWTAM 582


>gi|225432698|ref|XP_002278762.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14820
           [Vitis vinifera]
 gi|297737070|emb|CBI26271.3| unnamed protein product [Vitis vinifera]
          Length = 727

 Score =  319 bits (817), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 159/488 (32%), Positives = 271/488 (55%), Gaps = 5/488 (1%)

Query: 107 ARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAV 166
           A+  FD  P    F    ++  YA  G +  AR +FD M  RDVV+W+ MI GY +SG  
Sbjct: 149 AKLGFDSDP----FVQTGLVRMYAACGRIAEARLMFDKMFHRDVVTWSIMIDGYCQSGLF 204

Query: 167 EEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSI 226
            + L  ++ ++ +++  +E   + +L+ C +   L   + +H  ++    + +  + S++
Sbjct: 205 NDALLLFEEMKNYNVEPDEMMLSTVLSACGRAGNLSYGKMIHDFIMENNIVVDPHLQSAL 264

Query: 227 VDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWT 286
           V  YA CG +  A  LF++   ++++  T MV+GY+KLG +E+A  +FN+M +K+ V W+
Sbjct: 265 VTMYASCGSMDLALNLFEKMTPKNLVASTAMVTGYSKLGQIENARSVFNQMVKKDLVCWS 324

Query: 287 TLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRT 346
            +I+GY  +   Q+AL LF  M  L I+P+Q T  S + ACA + +L   K +H F+ + 
Sbjct: 325 AMISGYAESDSPQEALNLFNEMQSLGIKPDQVTMLSVITACAHLGALDQAKWIHLFVDKN 384

Query: 347 NFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRL 406
            F     + ++LI+MY+KCG L   R++FD    K N + W  MISA   HG    A+R 
Sbjct: 385 GFGGALPINNALIEMYAKCGSLERARRIFDKMPRK-NVISWTCMISAFAMHGDAGSALRF 443

Query: 407 FHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLA 466
           FH M   +++P+ IT   +L AC+H+GLV+EG   F SM ++  I P   H+ C+++L  
Sbjct: 444 FHQMEDENIEPNGITFVGVLYACSHAGLVEEGRKIFYSMINEHNITPKHVHYGCMVDLFG 503

Query: 467 QAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGL 526
           +A    + +  +E MP   +  +W +L   CR+HG I++G     +L++ +P     H  
Sbjct: 504 RANLLREALELVEAMPLAPNVIIWGSLMAACRVHGEIELGEFAAKRLLELDPDHDGAHVF 563

Query: 527 LSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSV 586
           LS+IY+   +   V +VR+L+  +   KE+  S  E+ N++H F V+D  H   D +Y  
Sbjct: 564 LSNIYAKARRWEDVGQVRKLMKHKGISKERGCSRFELNNEIHEFLVADRSHKHADEIYEK 623

Query: 587 LEQLAGQM 594
           L ++  ++
Sbjct: 624 LYEVVSKL 631



 Score =  165 bits (418), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 92/345 (26%), Positives = 174/345 (50%), Gaps = 33/345 (9%)

Query: 55  LAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKI 114
           L+ +L  C  + +L  GK +H    +         L + L++MY  CGS   A  +F+K+
Sbjct: 226 LSTVLSACGRAGNLSYGKMIH-DFIMENNIVVDPHLQSALVTMYASCGSMDLALNLFEKM 284

Query: 115 PVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYK 174
             KNL +   M++GY+ LG +++AR++F+ M ++D+V W+ MI GYA+S + +E L  + 
Sbjct: 285 TPKNLVASTAMVTGYSKLGQIENARSVFNQMVKKDLVCWSAMISGYAESDSPQEALNLFN 344

Query: 175 VLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCG 234
            ++   I  ++ +   ++T C  L  L   + +H  V   GF   + I++++++ YAKCG
Sbjct: 345 EMQSLGIKPDQVTMLSVITACAHLGALDQAKWIHLFVDKNGFGGALPINNALIEMYAKCG 404

Query: 235 ELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTR 294
            L  ARR+FD+   ++V++WT M+S +A  GD  SA + F++M ++N             
Sbjct: 405 SLERARRIFDKMPRKNVISWTCMISAFAMHGDAGSALRFFHQMEDEN------------- 451

Query: 295 NGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRT-NFRSNTI 353
                             I PN  TF   L AC+    ++ G+++   +I   N     +
Sbjct: 452 ------------------IEPNGITFVGVLYACSHAGLVEEGRKIFYSMINEHNITPKHV 493

Query: 354 VMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHG 398
               ++D++ +   L +  ++ +      N ++W ++++A   HG
Sbjct: 494 HYGCMVDLFGRANLLREALELVEAMPLAPNVIIWGSLMAACRVHG 538



 Score =  140 bits (352), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 107/452 (23%), Positives = 203/452 (44%), Gaps = 75/452 (16%)

Query: 135 MKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTI 194
           + +A ++F+ + + +    N  +   ++S   E+ L  Y+ +R   ++ + FSF  +L  
Sbjct: 72  LDYALSVFNLIPKPETHLCNRFLRELSRSEEPEKTLLVYERMRTQGLAVDRFSFPPLLKA 131

Query: 195 CVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTW 254
             +++ L    ++HG     GF S+  + + +V  YA CG +++AR +FD+   RDV+TW
Sbjct: 132 LSRVKSLVEGLEIHGLAAKLGFDSDPFVQTGLVRMYAACGRIAEARLMFDKMFHRDVVTW 191

Query: 255 TTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIR 314
           + M+ GY + G       LFN+                        AL LF  M    + 
Sbjct: 192 SIMIDGYCQSG-------LFND------------------------ALLLFEEMKNYNVE 220

Query: 315 PNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLN----- 369
           P++   S+ L AC    +L +GK +H F++  N   +  + S+L+ MY+ CG ++     
Sbjct: 221 PDEMMLSTVLSACGRAGNLSYGKMIHDFIMENNIVVDPHLQSALVTMYASCGSMDLALNL 280

Query: 370 --------------------------DGRQVFDLTDNKENSMLWNTMISALTQHGYDEQA 403
                                     + R VF+    K++ + W+ MIS   +    ++A
Sbjct: 281 FEKMTPKNLVASTAMVTGYSKLGQIENARSVFNQM-VKKDLVCWSAMISGYAESDSPQEA 339

Query: 404 IRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEG--LTYFESMTHDLGIIPNQEHHACL 461
           + LF++M    +KPD++T+  ++ AC H G + +   +  F       G +P       L
Sbjct: 340 LNLFNEMQSLGIKPDQVTMLSVITACAHLGALDQAKWIHLFVDKNGFGGALPINN---AL 396

Query: 462 IELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSS 521
           IE+ A+ G  ++     +KMP + +   W  +     +HG+     +   Q+ D+N + +
Sbjct: 397 IEMYAKCGSLERARRIFDKMPRK-NVISWTCMISAFAMHGDAGSALRFFHQMEDENIEPN 455

Query: 522 ATHGLLSSIYSALGKGRLVEKVRQ----LINE 549
                +  +Y+    G LVE+ R+    +INE
Sbjct: 456 GI-TFVGVLYACSHAG-LVEEGRKIFYSMINE 485


>gi|224057446|ref|XP_002299231.1| predicted protein [Populus trichocarpa]
 gi|222846489|gb|EEE84036.1| predicted protein [Populus trichocarpa]
          Length = 668

 Score =  319 bits (817), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 157/479 (32%), Positives = 266/479 (55%), Gaps = 1/479 (0%)

Query: 117 KNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVL 176
           K+++ YN ++    ++G    A  +FD    RD+VSWN++I GY +     E +  Y+ +
Sbjct: 187 KDMYLYNGIIHMLVSVGESGLAHKVFDEGCVRDLVSWNSLINGYVRRRQPREAMGIYQQM 246

Query: 177 RRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGEL 236
               +  +E +  G+++ C +LE LKL R++H  +  +G    + + ++++D Y KCG+L
Sbjct: 247 ITEHVKPDEVTMIGVVSACAQLESLKLGREIHRYIEESGLNLKISLVNALMDMYVKCGDL 306

Query: 237 SDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNG 296
              + LFD    + V++WTTM+ GYAK G ++ A KLF++MPEKN V+W  +I    +  
Sbjct: 307 EAGKVLFDNMRKKTVVSWTTMIVGYAKNGLLDMAGKLFHDMPEKNVVAWNAMIGSCVQAN 366

Query: 297 LGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMS 356
           L  +ALELF  M    ++P++ T   CL AC+ + +L  G   H ++ + N   +  + +
Sbjct: 367 LSFEALELFREMQWSNMKPDKVTMLHCLSACSQLGALDTGMWTHNYIKKHNLSLDVALGT 426

Query: 357 SLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVK 416
           +LIDMY+KCG +    QVF+    + NS+ W  +I  L  +G    AI  F  M+ S + 
Sbjct: 427 ALIDMYAKCGNMTKALQVFNEMP-RRNSLTWTAIIGGLALYGNVNDAIFYFSKMIDSGLM 485

Query: 417 PDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMN 476
           PD+IT   +L AC H GLV+EG  YF+ M     + P  +H++C++ LL +AG  ++   
Sbjct: 486 PDEITFLGVLTACCHGGLVEEGRKYFDQMKSRFNLSPQPKHYSCMVNLLGRAGLLEEAEE 545

Query: 477 QLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGK 536
            ++ MP E D+ +W AL   C IH N+ +G +   +L+D +P  S  + LL+++Y   GK
Sbjct: 546 LIKTMPMEADAMVWGALFFACGIHRNLLIGERAASKLLDLDPHDSGIYVLLANMYREAGK 605

Query: 537 GRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQMG 595
               + +R+++ ER  +K    S IE+   ++ F V D  HP  + +Y     +   +G
Sbjct: 606 WEEAQNIRKMMMERGVEKTPGSSSIEVNGIINEFIVRDKSHPQSEQIYECFNLINKTIG 664



 Score =  154 bits (388), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 125/530 (23%), Positives = 241/530 (45%), Gaps = 95/530 (17%)

Query: 74  VHLHLKLTQRKTPTTF-------LSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNML 126
           +H H   T +  PT++       LSN L+S+   C S    +++  ++ +  L     +L
Sbjct: 29  LHSHSFSTHKSNPTSWNTTHTYVLSNPLLSLLENCKSFSQLKQIQAQMILTGL-----IL 83

Query: 127 SGYAN-----LGMMKHARNL------FDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYK- 174
            G+A+        +  +RNL       +N+   +V SWN +I G  +S   ++GL  YK 
Sbjct: 84  DGFASSRLISFCAISESRNLDYCIKILNNLQNPNVFSWNAVIRGCVESENPQKGLVLYKR 143

Query: 175 VLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCG 234
           +L R     + ++++ +  +C  L    +  ++ GQVL  GF  ++ + + I+      G
Sbjct: 144 MLTRAGCRPDNYTYSFLFKVCANLVLSYMGFEILGQVLKMGFDKDMYLYNGIIHMLVSVG 203

Query: 235 ELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTR 294
           E   A ++FDE   RD+++W ++++GY +                + P            
Sbjct: 204 ESGLAHKVFDEGCVRDLVSWNSLINGYVR---------------RRQP------------ 236

Query: 295 NGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIV 354
               ++A+ ++ +M+   ++P++ T    + ACA + SLK G+++H ++  +       +
Sbjct: 237 ----REAMGIYQQMITEHVKPDEVTMIGVVSACAQLESLKLGREIHRYIEESGLNLKISL 292

Query: 355 MSSLIDMYSKCGCLNDGRQVFDLTDNK------------------------------ENS 384
           +++L+DMY KCG L  G+ +FD    K                              +N 
Sbjct: 293 VNALMDMYVKCGDLEAGKVLFDNMRKKTVVSWTTMIVGYAKNGLLDMAGKLFHDMPEKNV 352

Query: 385 MLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGL-TYFE 443
           + WN MI +  Q     +A+ LF +M  S++KPDK+T+   L+AC+  G +  G+ T+  
Sbjct: 353 VAWNAMIGSCVQANLSFEALELFREMQWSNMKPDKVTMLHCLSACSQLGALDTGMWTHNY 412

Query: 444 SMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNI 503
              H+L +  +      LI++ A+ G   + +    +MP   +S  W A+ G   ++GN+
Sbjct: 413 IKKHNLSL--DVALGTALIDMYAKCGNMTKALQVFNEMP-RRNSLTWTAIIGGLALYGNV 469

Query: 504 DMGRKVVDQLIDQN--PQSSATHGLLSSIYSALGKGRLVEKVRQLINERQ 551
           +       ++ID    P      G+L    +A   G LVE+ R+  ++ +
Sbjct: 470 NDAIFYFSKMIDSGLMPDEITFLGVL----TACCHGGLVEEGRKYFDQMK 515



 Score =  132 bits (333), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 93/392 (23%), Positives = 182/392 (46%), Gaps = 38/392 (9%)

Query: 8   RGINRKNLPNNCLIQSFLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKS 67
            G  R  +  N LI  +   + + Q  EA+     +    ++    T+  ++  CA+ +S
Sbjct: 214 EGCVRDLVSWNSLINGY---VRRRQPREAMGIYQQMITEHVKPDEVTMIGVVSACAQLES 270

Query: 68  LKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKV-FDKIPVKNLFSYNNML 126
           LKLG+ +H +++ +      + L N L+ MY KCG D++A KV FD +  K + S+  M+
Sbjct: 271 LKLGREIHRYIEESGLNLKIS-LVNALMDMYVKCG-DLEAGKVLFDNMRKKTVVSWTTMI 328

Query: 127 SGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEF 186
            GYA  G++  A  LF +M E++VV+WN MI    ++    E L+ ++ ++  ++  ++ 
Sbjct: 329 VGYAKNGLLDMAGKLFHDMPEKNVVAWNAMIGSCVQANLSFEALELFREMQWSNMKPDKV 388

Query: 187 SFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDET 246
           +    L+ C +L  L      H  +       +V + ++++D YAKCG ++ A ++F+E 
Sbjct: 389 TMLHCLSACSQLGALDTGMWTHNYIKKHNLSLDVALGTALIDMYAKCGNMTKALQVFNEM 448

Query: 247 DARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFT 306
             R+ LTWT ++ G A  G++                                 A+  F+
Sbjct: 449 PRRNSLTWTAIIGGLALYGNVND-------------------------------AIFYFS 477

Query: 307 RMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFL-IRTNFRSNTIVMSSLIDMYSKC 365
           +M+   + P++ TF   L AC     ++ G++    +  R N        S ++++  + 
Sbjct: 478 KMIDSGLMPDEITFLGVLTACCHGGLVEEGRKYFDQMKSRFNLSPQPKHYSCMVNLLGRA 537

Query: 366 GCLNDGRQVFDLTDNKENSMLWNTMISALTQH 397
           G L +  ++      + ++M+W  +  A   H
Sbjct: 538 GLLEEAEELIKTMPMEADAMVWGALFFACGIH 569


>gi|242087005|ref|XP_002439335.1| hypothetical protein SORBIDRAFT_09g004560 [Sorghum bicolor]
 gi|241944620|gb|EES17765.1| hypothetical protein SORBIDRAFT_09g004560 [Sorghum bicolor]
          Length = 886

 Score =  318 bits (816), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 177/559 (31%), Positives = 296/559 (52%), Gaps = 55/559 (9%)

Query: 58  ILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVK 117
           IL  CA  K+L   K +H +  +        F+ N LI  Y KCGS  DA  VF+ +  K
Sbjct: 265 ILPACASLKALPQTKEIHSY-AIRNGTFADAFVCNALIDTYAKCGSMKDAVNVFNVMEFK 323

Query: 118 NLFSYNNMLSGYANLGMMKHARNLFDNMAER----DVVSWNTMIIGYAKSGAVEEGLKFY 173
           ++ S+N M++GY   G    A  LF NM +     DV++W+ +I GYA+ G  +E L  +
Sbjct: 324 DVVSWNAMVTGYTQSGKFGAAFELFKNMRKENIPLDVITWSAVIAGYAQRGYGQEALDTF 383

Query: 174 KVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLS------------NVV 221
           + +  +    N  +   +L+ C  L  L    + H   L    LS            ++V
Sbjct: 384 QQMILYGSEPNSVTIISLLSACASLGALSQGMETHAYSLKKCLLSLDNDFGGDGDGEDLV 443

Query: 222 ISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMP--E 279
           + ++++D Y+KC     AR                                +FN +P  E
Sbjct: 444 VHNALIDMYSKCRSFKAAR-------------------------------TIFNSIPRRE 472

Query: 280 KNPVSWTTLIAGYTRNGLGQKALELFTRMM--ILRIRPNQHTFSSCLCACASIVSLKHGK 337
           +N V+WT +I GY + G    AL+LF+ M+     + PN +T S  L ACA + SL+ GK
Sbjct: 473 RNVVTWTVMIGGYAQYGDSNDALKLFSEMISKPYAVAPNAYTISCILMACAHLSSLRMGK 532

Query: 338 QVHGFLIRTNFRSNTI--VMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALT 395
           Q+H ++ R +   +++  V + LIDMYSKCG ++  R VFD +  K N + W +M+S   
Sbjct: 533 QIHAYVTRHHEYESSVYFVANCLIDMYSKCGDVDTARNVFD-SMPKRNEVSWTSMMSGYG 591

Query: 396 QHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQ 455
            HG  ++A+ +F  M ++   PD I+  V+L AC+HSG+V +GL YF+ M  D G+I + 
Sbjct: 592 MHGRGKEALDIFDKMQKAGFVPDDISFLVLLYACSHSGMVDQGLDYFDIMRSDYGVIASA 651

Query: 456 EHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLID 515
           +H+AC+I+LLA++G  D+    +++MP E  + +W AL   CR+H N+++    +++L+ 
Sbjct: 652 QHYACVIDLLARSGRLDKAWKTIQEMPMEPSAAIWVALLSACRVHSNVELAEYALNKLVS 711

Query: 516 QNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDS 575
              ++  ++ L+S+IY+   + + V ++RQL+ +   KK    SW++ +    +F V D 
Sbjct: 712 MKAENDGSYTLISNIYATARRWKDVARIRQLMKKSGIKKRPGCSWVQGKKGTASFFVGDR 771

Query: 576 LHPMRDVLYSVLEQLAGQM 594
            HP+   +YS+LE+L G++
Sbjct: 772 SHPLSPEIYSLLERLIGRI 790



 Score =  198 bits (503), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 135/520 (25%), Positives = 240/520 (46%), Gaps = 72/520 (13%)

Query: 28  ISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPT 87
           I +G+L  AI     + + G +    TL + L+ C E  S + G   H            
Sbjct: 125 IEEGRLDRAIGVSCRMLRAGTKPDHFTLPYALKACGELPSYRSGSAFH------------ 172

Query: 88  TFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAE 147
                 LI     C +  ++          N+F  N +++ Y+  G ++ A  +FD +  
Sbjct: 173 -----GLI-----CCNGFES----------NVFVCNALVAMYSRSGSLEDASLVFDEITR 212

Query: 148 R---DVVSWNTMIIGYAKSGAVEEGLKFYKVLRRF--SISCNE----FSFAGILTICVKL 198
           +   DV+SWN+++  + K       L  +  +       + NE     S   IL  C  L
Sbjct: 213 KGIDDVISWNSIVAAHVKGSNPRTALDLFSEMTTIVHEKATNERSDIISIVNILPACASL 272

Query: 199 EELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMV 258
           + L  T+++H   +  G  ++  + ++++D YAKCG + DA  +F+  + +DV++W  MV
Sbjct: 273 KALPQTKEIHSYAIRNGTFADAFVCNALIDTYAKCGSMKDAVNVFNVMEFKDVVSWNAMV 332

Query: 259 SGYAKLGDMESASKLFNEMPEKN----PVSWTTLIAGYTRNGLGQKALELFTRMMILRIR 314
           +GY + G   +A +LF  M ++N     ++W+ +IAGY + G GQ+AL+ F +M++    
Sbjct: 333 TGYTQSGKFGAAFELFKNMRKENIPLDVITWSAVIAGYAQRGYGQEALDTFQQMILYGSE 392

Query: 315 PNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRS------------NTIVMSSLIDMY 362
           PN  T  S L ACAS+ +L  G + H + ++    S            + +V ++LIDMY
Sbjct: 393 PNSVTIISLLSACASLGALSQGMETHAYSLKKCLLSLDNDFGGDGDGEDLVVHNALIDMY 452

Query: 363 SKCGCLNDGRQVFDLTDNKE-NSMLWNTMISALTQHGYDEQAIRLFHDMVRS--SVKPDK 419
           SKC      R +F+    +E N + W  MI    Q+G    A++LF +M+    +V P+ 
Sbjct: 453 SKCRSFKAARTIFNSIPRRERNVVTWTVMIGGYAQYGDSNDALKLFSEMISKPYAVAPNA 512

Query: 420 ITLAVILNACTHSGLVQEG------LTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQ 473
            T++ IL AC H   ++ G      +T        +  + N     CLI++ ++ G  D 
Sbjct: 513 YTISCILMACAHLSSLRMGKQIHAYVTRHHEYESSVYFVAN-----CLIDMYSKCGDVDT 567

Query: 474 LMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQL 513
             N  + MP + +   W ++     +HG       + D++
Sbjct: 568 ARNVFDSMP-KRNEVSWTSMMSGYGMHGRGKEALDIFDKM 606



 Score =  136 bits (342), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 101/419 (24%), Positives = 179/419 (42%), Gaps = 57/419 (13%)

Query: 92  NHLISMYFKCGSDVDARKVFDKIPVKNLFSY------------------------NNMLS 127
            H  S+  +C S    R++  KI    L SY                          +++
Sbjct: 32  THFASLLKECRSVNTVRQIHQKIIAYGLLSYPASLLSVSLPPLPSHSYVSPKSLGTGVVA 91

Query: 128 GYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFS 187
            Y   G    A ++ + +     V WN ++  + + G ++  +     + R     + F+
Sbjct: 92  SYLACGATSDALSVLERVVPSPAVWWNLLVRAHIEEGRLDRAIGVSCRMLRAGTKPDHFT 151

Query: 188 FAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETD 247
               L  C +L   +     HG +   GF SNV + +++V  Y++ G L DA  +FDE  
Sbjct: 152 LPYALKACGELPSYRSGSAFHGLICCNGFESNVFVCNALVAMYSRSGSLEDASLVFDEIT 211

Query: 248 AR---DVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALEL 304
            +   DV++W ++V+ + K  +  +A  LF+EM        TT++     N       E 
Sbjct: 212 RKGIDDVISWNSIVAAHVKGSNPRTALDLFSEM--------TTIVHEKATN-------ER 256

Query: 305 FTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSK 364
              + I+ I P          ACAS+ +L   K++H + IR    ++  V ++LID Y+K
Sbjct: 257 SDIISIVNILP----------ACASLKALPQTKEIHSYAIRNGTFADAFVCNALIDTYAK 306

Query: 365 CGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAV 424
           CG + D   VF++ + K+  + WN M++  TQ G    A  LF +M + ++  D IT + 
Sbjct: 307 CGSMKDAVNVFNVMEFKD-VVSWNAMVTGYTQSGKFGAAFELFKNMRKENIPLDVITWSA 365

Query: 425 ILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPY 483
           ++      G  QE L  F+ M     +  ++ +   +I LL+       L   +E   Y
Sbjct: 366 VIAGYAQRGYGQEALDTFQQMI----LYGSEPNSVTIISLLSACASLGALSQGMETHAY 420



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 49/132 (37%), Positives = 82/132 (62%), Gaps = 7/132 (5%)

Query: 52  AETLAFILQQCAESKSLKLGKRVHLHL-KLTQRKTPTTFLSNHLISMYFKCGSDVD-ARK 109
           A T++ IL  CA   SL++GK++H ++ +  + ++   F++N LI MY KCG DVD AR 
Sbjct: 512 AYTISCILMACAHLSSLRMGKQIHAYVTRHHEYESSVYFVANCLIDMYSKCG-DVDTARN 570

Query: 110 VFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAER----DVVSWNTMIIGYAKSGA 165
           VFD +P +N  S+ +M+SGY   G  K A ++FD M +     D +S+  ++   + SG 
Sbjct: 571 VFDSMPKRNEVSWTSMMSGYGMHGRGKEALDIFDKMQKAGFVPDDISFLVLLYACSHSGM 630

Query: 166 VEEGLKFYKVLR 177
           V++GL ++ ++R
Sbjct: 631 VDQGLDYFDIMR 642



 Score = 82.4 bits (202), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 76/331 (22%), Positives = 131/331 (39%), Gaps = 58/331 (17%)

Query: 188 FAGILTICVKLEELKLTRQVHGQVLVTGFLS------NVVISSSIVDAYAKCGELSDARR 241
           FA +L  C     +   RQ+H +++  G LS      +V +      +Y     L     
Sbjct: 34  FASLLKEC---RSVNTVRQIHQKIIAYGLLSYPASLLSVSLPPLPSHSYVSPKSLG---- 86

Query: 242 LFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKA 301
                        T +V+ Y   G    A  +   +     V W  L+  +   G   +A
Sbjct: 87  -------------TGVVASYLACGATSDALSVLERVVPSPAVWWNLLVRAHIEEGRLDRA 133

Query: 302 LELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDM 361
           + +  RM+    +P+  T    L AC  + S + G   HG +    F SN  V ++L+ M
Sbjct: 134 IGVSCRMLRAGTKPDHFTLPYALKACGELPSYRSGSAFHGLICCNGFESNVFVCNALVAM 193

Query: 362 YSKCGCLNDGRQVFDLTDNK--ENSMLWNTMISALTQHGYDEQAIRLFHDMVR------S 413
           YS+ G L D   VFD    K  ++ + WN++++A  +      A+ LF +M        +
Sbjct: 194 YSRSGSLEDASLVFDEITRKGIDDVISWNSIVAAHVKGSNPRTALDLFSEMTTIVHEKAT 253

Query: 414 SVKPDKITLAVILNACT-----------HSGLVQEGLTYFESMTHDLGIIPNQEHHACLI 462
           + + D I++  IL AC            HS  ++ G T+ ++   +            LI
Sbjct: 254 NERSDIISIVNILPACASLKALPQTKEIHSYAIRNG-TFADAFVCN-----------ALI 301

Query: 463 ELLAQAGCSDQLMNQLEKMPYEHDSYLWNAL 493
           +  A+ G     +N    M ++ D   WNA+
Sbjct: 302 DTYAKCGSMKDAVNVFNVMEFK-DVVSWNAM 331


>gi|347954538|gb|AEP33769.1| organelle transcript processing 82, partial [Olimarabidopsis
           pumila]
          Length = 710

 Score =  318 bits (816), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 181/556 (32%), Positives = 297/556 (53%), Gaps = 38/556 (6%)

Query: 34  SEAISSLDL---LAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFL 90
           S+ +S+L L   +   G+   + T  F+L+ CA+S + K G+++H  + L        ++
Sbjct: 82  SDPVSALKLYVCMVSLGLLPNSYTFPFLLKSCAKSXAFKEGQQLHGQV-LKFGFDLDLYI 140

Query: 91  SNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDV 150
              LISMY + G   DA+KV DK   +++ SY  +++GYA+ G ++ A  +FD +  +DV
Sbjct: 141 HTSLISMYVQNGRLEDAQKVXDKSSHRDVVSYTALITGYASRGXIESAHKMFDEIPVKDV 200

Query: 151 VSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQ 210
           VSWN  I GYA++G  +E L+ +K + + ++  +E +   +L+ C +   ++L RQVH  
Sbjct: 201 VSWNAXISGYAETGNYKEALELFKKMMKTNVRPDESTMVTVLSACAQSGSIELGRQVHSW 260

Query: 211 VLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESA 270
           +   GF  N+ I ++++D Y+KCGEL                               E+A
Sbjct: 261 INDHGFGXNLKIVNALIDLYSKCGEL-------------------------------ETA 289

Query: 271 SKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASI 330
             LF  +  K+ +SW TLI GYT   L ++AL LF  M+    +PN  T  S L ACA +
Sbjct: 290 CGLFQGLSNKDVISWNTLIGGYTHMNLYKEALLLFQDMLRSGEKPNDVTMLSILSACAHL 349

Query: 331 VSLKHGKQVHGFLIR--TNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWN 388
            ++  G+ +H ++ +      + + + +SLIDMY+KCG +   +QVFD   N+  S  WN
Sbjct: 350 GAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAQQVFDSMLNRSLSS-WN 408

Query: 389 TMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHD 448
            MI     HG    A  +F  M ++ ++PD IT   +L+AC+HSG++  G   F SMT D
Sbjct: 409 AMIFGFAMHGRANAAFDIFSRMRKNGIEPDDITFVGLLSACSHSGMLDLGRHIFRSMTRD 468

Query: 449 LGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRK 508
             ++P  EH+ C+I+L   +G   +    +  M  E D  +W +L   C++HGN+++G  
Sbjct: 469 YKLMPKLEHYGCMIDLXGHSGLFKEAEKMINTMEMEPDGVIWCSLLKACKMHGNVELGES 528

Query: 509 VVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVH 568
               LI   P++  ++ LLS+IY+   +   V K R L+N++  KK    S IEI++ VH
Sbjct: 529 YAQNLIKIEPENPGSYVLLSNIYATAERWNEVAKTRALLNDKGMKKVPGCSSIEIDSVVH 588

Query: 569 AFSVSDSLHPMRDVLY 584
            F + D  HP    +Y
Sbjct: 589 EFIIGDKFHPRNREIY 604



 Score =  224 bits (570), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 132/398 (33%), Positives = 214/398 (53%), Gaps = 5/398 (1%)

Query: 135 MKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTI 194
           + +A ++FD + E  ++ WNTM  G+A S      LK Y  +    +  N ++F  +L  
Sbjct: 53  LPYAISVFDTIQEPXLLIWNTMFRGHALSSDPVSALKLYVCMVSLGLLPNSYTFPFLLKS 112

Query: 195 CVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTW 254
           C K    K  +Q+HGQVL  GF  ++ I +S++  Y + G L DA+++ D++  RDV+++
Sbjct: 113 CAKSXAFKEGQQLHGQVLKFGFDLDLYIHTSLISMYVQNGRLEDAQKVXDKSSHRDVVSY 172

Query: 255 TTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIR 314
           T +++GYA  G +ESA K+F+E+P K+ VSW   I+GY   G  ++ALELF +MM   +R
Sbjct: 173 TALITGYASRGXIESAHKMFDEIPVKDVVSWNAXISGYAETGNYKEALELFKKMMKTNVR 232

Query: 315 PNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQV 374
           P++ T  + L ACA   S++ G+QVH ++    F  N  ++++LID+YSKCG L     +
Sbjct: 233 PDESTMVTVLSACAQSGSIELGRQVHSWINDHGFGXNLKIVNALIDLYSKCGELETACGL 292

Query: 375 FDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGL 434
           F    NK+  + WNT+I   T     ++A+ LF DM+RS  KP+ +T+  IL+AC H G 
Sbjct: 293 FQGLSNKD-VISWNTLIGGYTHMNLYKEALLLFQDMLRSGEKPNDVTMLSILSACAHLGA 351

Query: 435 VQEGLTYFESMTHDL-GIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNAL 493
           +  G      +   L G+         LI++ A+ G  +      + M     S  WNA+
Sbjct: 352 IDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAQQVFDSMLNRSLSS-WNAM 410

Query: 494 HGVCRIHGNIDMGRKVVDQLIDQN--PQSSATHGLLSS 529
                +HG  +    +  ++      P      GLLS+
Sbjct: 411 IFGFAMHGRANAAFDIFSRMRKNGIEPDDITFVGLLSA 448



 Score =  102 bits (253), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 84/400 (21%), Positives = 164/400 (41%), Gaps = 68/400 (17%)

Query: 31  GQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFL 90
           G   EA+     + +  +R    T+  +L  CA+S S++LG++VH  +           +
Sbjct: 214 GNYKEALELFKKMMKTNVRPDESTMVTVLSACAQSGSIELGRQVHSWIN-DHGFGXNLKI 272

Query: 91  SNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDV 150
            N LI +Y KCG    A  +F  +  K++ S+N ++ GY ++ + K A  LF +M     
Sbjct: 273 VNALIDLYSKCGELETACGLFQGLSNKDVISWNTLIGGYTHMNLYKEALLLFQDM----- 327

Query: 151 VSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQ 210
                      +SG                   N+ +   IL+ C  L  + + R +H  
Sbjct: 328 ----------LRSGE----------------KPNDVTMLSILSACAHLGAIDIGRWIHVY 361

Query: 211 V--LVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDME 268
           +   + G  +   + +S++D YAKCG++  A+++FD    R + +W  M+ G+A      
Sbjct: 362 IDKRLKGVTNASSLRTSLIDMYAKCGDIEAAQQVFDSMLNRSLSSWNAMIFGFA------ 415

Query: 269 SASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACA 328
                                     +G    A ++F+RM    I P+  TF   L AC+
Sbjct: 416 -------------------------MHGRANAAFDIFSRMRKNGIEPDDITFVGLLSACS 450

Query: 329 SIVSLKHGKQVHGFLIRT-NFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLW 387
               L  G+ +   + R             +ID+    G   +  ++ +  + + + ++W
Sbjct: 451 HSGMLDLGRHIFRSMTRDYKLMPKLEHYGCMIDLXGHSGLFKEAEKMINTMEMEPDGVIW 510

Query: 388 NTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILN 427
            +++ A   HG  E       ++++  ++P+     V+L+
Sbjct: 511 CSLLKACKMHGNVELGESYAQNLIK--IEPENPGSYVLLS 548


>gi|359491266|ref|XP_002280289.2| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
           [Vitis vinifera]
          Length = 663

 Score =  318 bits (816), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 164/460 (35%), Positives = 270/460 (58%), Gaps = 7/460 (1%)

Query: 125 MLSGYANLGMMKHARNLFDNMAE-RDVVSWNTMIIGYAKSGAVEEGLK-FYKVLRRF-SI 181
           ++  Y     +  AR +FD        + WN MI  Y+K+ + +E L  F+++L      
Sbjct: 93  LIHSYIGCRNLSFARIVFDQFPSLPPTIIWNLMIQAYSKTPSSQESLYLFHQMLAHGRPT 152

Query: 182 SCNEFSFAGILTICVKLEELK-LTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDAR 240
           S ++++F  + T C +   L+     VHG V+  G+ S++ + +S+V+ Y+    + DA+
Sbjct: 153 SADKYTFTFVFTACSRHPTLRGYGENVHGMVVKDGYESDIFVGNSLVNMYSIFSRMVDAK 212

Query: 241 RLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQK 300
           R+FDE   RDV+TWT++V GYA  G++  A +LF+ MP +N VSW  ++AGY  +    +
Sbjct: 213 RVFDEMPQRDVITWTSVVKGYAMRGELVRARELFDMMPGRNDVSWAVMVAGYVGHRFYNE 272

Query: 301 ALELFTRMMIL-RIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLI 359
           AL+ F  M+    ++PN+    S L ACA + +L  GK +H ++ +     ++ + ++LI
Sbjct: 273 ALQCFNDMLCHDEVKPNEAVLVSILSACAHLGALDQGKWIHVYIDKNRILLSSNISTALI 332

Query: 360 DMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDK 419
           DMY+KCG ++  R+VFD   +K + + W +MIS L+ HG   + +  F +M+    KPD 
Sbjct: 333 DMYAKCGRIDCARRVFDGL-HKRDLLTWTSMISGLSMHGLGAECLWTFSEMLAEGFKPDD 391

Query: 420 ITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLE 479
           ITL  +LN C+HSGLV+EGL+ F  M    GI+P  EH+ CLI+LL +AG  +     ++
Sbjct: 392 ITLLGVLNGCSHSGLVEEGLSIFHDMIPLWGIVPKLEHYGCLIDLLGRAGRLESAFEAIK 451

Query: 480 KMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQS-SATHGLLSSIYSALGKGR 538
            MP E D   W AL   CRIHG++D+G ++++ + +  P S    + LLS++Y+++G+  
Sbjct: 452 SMPMEPDVVAWRALLSACRIHGDVDLGERIINHIAELCPGSHGGGYVLLSNLYASMGQWE 511

Query: 539 LVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHP 578
            V KVR+ +++R  +     SWIEI+  VH F  +D LHP
Sbjct: 512 SVTKVRKAMSQRGSEGCPGCSWIEIDGVVHEFLAADKLHP 551



 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 93/348 (26%), Positives = 155/348 (44%), Gaps = 35/348 (10%)

Query: 54  TLAFILQQCAESKSLK-LGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFD 112
           T  F+   C+   +L+  G+ VH  + +        F+ N L++MY      VDA++VFD
Sbjct: 158 TFTFVFTACSRHPTLRGYGENVH-GMVVKDGYESDIFVGNSLVNMYSIFSRMVDAKRVFD 216

Query: 113 KIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLK- 171
           ++P +++ ++ +++ GYA  G +  AR LFD M  R+ VSW  M+ GY       E L+ 
Sbjct: 217 EMPQRDVITWTSVVKGYAMRGELVRARELFDMMPGRNDVSWAVMVAGYVGHRFYNEALQC 276

Query: 172 FYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYA 231
           F  +L    +  NE     IL+ C  L  L   + +H  +     L +  IS++++D YA
Sbjct: 277 FNDMLCHDEVKPNEAVLVSILSACAHLGALDQGKWIHVYIDKNRILLSSNISTALIDMYA 336

Query: 232 KCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAG 291
           KCG +  ARR+FD    RD+LTWT+M+S                               G
Sbjct: 337 KCGRIDCARRVFDGLHKRDLLTWTSMIS-------------------------------G 365

Query: 292 YTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQV-HGFLIRTNFRS 350
            + +GLG + L  F+ M+    +P+  T    L  C+    ++ G  + H  +       
Sbjct: 366 LSMHGLGAECLWTFSEMLAEGFKPDDITLLGVLNGCSHSGLVEEGLSIFHDMIPLWGIVP 425

Query: 351 NTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHG 398
                  LID+  + G L    +       + + + W  ++SA   HG
Sbjct: 426 KLEHYGCLIDLLGRAGRLESAFEAIKSMPMEPDVVAWRALLSACRIHG 473



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 79/343 (23%), Positives = 146/343 (42%), Gaps = 74/343 (21%)

Query: 197 KLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTT 256
           K   L   +Q+H QV+  G   N  +   ++ +Y  C  LS AR +FD+           
Sbjct: 64  KRPSLTQIKQIHAQVVTHGLAQNTSLLGPLIHSYIGCRNLSFARIVFDQ----------- 112

Query: 257 MVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRP- 315
                            F  +P    + W  +I  Y++    Q++L LF +M+    RP 
Sbjct: 113 -----------------FPSLPPT--IIWNLMIQAYSKTPSSQESLYLFHQMLA-HGRPT 152

Query: 316 --NQHTFSSCLCACASIVSLK-HGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGR 372
             +++TF+    AC+   +L+ +G+ VHG +++  + S+  V +SL++MYS    + D +
Sbjct: 153 SADKYTFTFVFTACSRHPTLRGYGENVHGMVVKDGYESDIFVGNSLVNMYSIFSRMVDAK 212

Query: 373 QVFDLTDNKE------------------------------NSMLWNTMISALTQHGYDEQ 402
           +VFD    ++                              N + W  M++    H +  +
Sbjct: 213 RVFDEMPQRDVITWTSVVKGYAMRGELVRARELFDMMPGRNDVSWAVMVAGYVGHRFYNE 272

Query: 403 AIRLFHDMV-RSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACL 461
           A++ F+DM+    VKP++  L  IL+AC H G + +G  +         I+ +      L
Sbjct: 273 ALQCFNDMLCHDEVKPNEAVLVSILSACAHLGALDQG-KWIHVYIDKNRILLSSNISTAL 331

Query: 462 IELLAQAG---CSDQLMNQLEKMPYEHDSYLWNALHGVCRIHG 501
           I++ A+ G   C+ ++ + L K     D   W ++     +HG
Sbjct: 332 IDMYAKCGRIDCARRVFDGLHK----RDLLTWTSMISGLSMHG 370



 Score = 65.5 bits (158), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 57/249 (22%), Positives = 100/249 (40%), Gaps = 40/249 (16%)

Query: 41  DLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFK 100
           D+L    ++     L  IL  CA   +L  GK +H+++    R   ++ +S  LI MY K
Sbjct: 279 DMLCHDEVKPNEAVLVSILSACAHLGALDQGKWIHVYID-KNRILLSSNISTALIDMYAK 337

Query: 101 CGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMA----ERDVVSWNTM 156
           CG    AR+VFD +  ++L ++ +M+SG +  G+       F  M     + D ++   +
Sbjct: 338 CGRIDCARRVFDGLHKRDLLTWTSMISGLSMHGLGAECLWTFSEMLAEGFKPDDITLLGV 397

Query: 157 IIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGF 216
           + G + SG VEEGL  +                                  H  + + G 
Sbjct: 398 LNGCSHSGLVEEGLSIF----------------------------------HDMIPLWGI 423

Query: 217 LSNVVISSSIVDAYAKCGELSDARRLFDETDAR-DVLTWTTMVSGYAKLGDMESASKLFN 275
           +  +     ++D   + G L  A           DV+ W  ++S     GD++   ++ N
Sbjct: 424 VPKLEHYGCLIDLLGRAGRLESAFEAIKSMPMEPDVVAWRALLSACRIHGDVDLGERIIN 483

Query: 276 EMPEKNPVS 284
            + E  P S
Sbjct: 484 HIAELCPGS 492



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 33/118 (27%), Positives = 55/118 (46%), Gaps = 5/118 (4%)

Query: 315 PNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQV 374
           P+  TF   L    S+  +K   Q+H  ++      NT ++  LI  Y  C  L+  R V
Sbjct: 53  PSHSTFVQLLKKRPSLTQIK---QIHAQVVTHGLAQNTSLLGPLIHSYIGCRNLSFARIV 109

Query: 375 FDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVR--SSVKPDKITLAVILNACT 430
           FD   +   +++WN MI A ++    ++++ LFH M+        DK T   +  AC+
Sbjct: 110 FDQFPSLPPTIIWNLMIQAYSKTPSSQESLYLFHQMLAHGRPTSADKYTFTFVFTACS 167


>gi|225462250|ref|XP_002263297.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20230
           [Vitis vinifera]
 gi|297736133|emb|CBI24171.3| unnamed protein product [Vitis vinifera]
          Length = 687

 Score =  318 bits (816), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 185/590 (31%), Positives = 302/590 (51%), Gaps = 40/590 (6%)

Query: 10  INRKNLPNNCLIQSFLSLISKGQLSEAISSLDLLAQRGIRLPAETLAF-ILQQCAESKSL 68
           I + +LP   ++ S  +L   G+  EAI   +    +    P + L   + + CA  + +
Sbjct: 37  IPQPDLPTWTILIS--ALTKHGRSLEAIQYYNDFRHKNCVEPDKLLLLSVAKACASLRDV 94

Query: 69  KLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSG 128
              KRVH    +         L N LI MY KC     AR VF+ +P             
Sbjct: 95  MNAKRVH-EDAIRFGFCSDVLLGNALIDMYGKCRCSEGARLVFEGMPF------------ 141

Query: 129 YANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSF 188
                              RDV+SW +M   Y   G + E L  ++ +       N  + 
Sbjct: 142 -------------------RDVISWTSMASCYVNCGLLREALGAFRKMGLNGERPNSVTV 182

Query: 189 AGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDA 248
           + IL  C  L++LK  R+VHG V+  G   NV +SS++V+ YA C  +  A+ +FD    
Sbjct: 183 SSILPACTDLKDLKSGREVHGFVVRNGMGGNVFVSSALVNMYASCLSIRQAQLVFDSMSR 242

Query: 249 RDVLTWTTMVSGYAKLGDMESASKLFNEMPEK----NPVSWTTLIAGYTRNGLGQKALEL 304
           RD ++W  +++ Y    + E    +F  M  +    N  SW  +I G  +NG  +KALE+
Sbjct: 243 RDTVSWNVLITAYFLNKECEKGLSVFGRMMSEGVGLNYASWNAVIGGCMQNGRTEKALEV 302

Query: 305 FTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSK 364
            +RM     +PNQ T +S L AC ++ SL+ GKQ+HG++ R  F  +    ++L+ MY+K
Sbjct: 303 LSRMQNSGFKPNQITITSVLPACTNLESLRGGKQIHGYIFRHWFFQDLTTTTALVFMYAK 362

Query: 365 CGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAV 424
           CG L   R+VF +   K +++ WNTMI A + HG  E+A+ LF +MV S V+P+ +T   
Sbjct: 363 CGDLELSRRVFSMM-TKRDTVSWNTMIIATSMHGNGEEALLLFREMVDSGVRPNSVTFTG 421

Query: 425 ILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYE 484
           +L+ C+HS LV EGL  F+SM+ D  + P+ +HH+C++++L++AG  ++    ++KMP E
Sbjct: 422 VLSGCSHSRLVDEGLLIFDSMSRDHSVEPDADHHSCMVDVLSRAGRLEEAYEFIKKMPIE 481

Query: 485 HDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVR 544
             +  W AL G CR++ N+++GR   ++L +    +   + LLS+I  +        + R
Sbjct: 482 PTAGAWGALLGGCRVYKNVELGRIAANRLFEIESDNPGNYVLLSNILVSAKLWSEASETR 541

Query: 545 QLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQM 594
           +L+ +R   K    SWI++ N+VH F V D  +   D +Y  L+ +  +M
Sbjct: 542 KLMRDRGVTKNPGCSWIQVRNRVHTFVVGDKSNDQSDEIYRFLDYMGEKM 591



 Score =  154 bits (388), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 112/447 (25%), Positives = 194/447 (43%), Gaps = 90/447 (20%)

Query: 129 YANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLR-RFSISCNEFS 187
           Y+N G ++ AR+LFD + + D+ +W  +I    K G   E +++Y   R +  +  ++  
Sbjct: 21  YSNSGDLQRARHLFDKIPQPDLPTWTILISALTKHGRSLEAIQYYNDFRHKNCVEPDKLL 80

Query: 188 FAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETD 247
              +   C  L ++   ++VH   +  GF S+V++ ++++D Y KC   S+  RL     
Sbjct: 81  LLSVAKACASLRDVMNAKRVHEDAIRFGFCSDVLLGNALIDMYGKC-RCSEGARL----- 134

Query: 248 ARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTR 307
                                    +F  MP ++ +SWT++ + Y   GL ++AL  F +
Sbjct: 135 -------------------------VFEGMPFRDVISWTSMASCYVNCGLLREALGAFRK 169

Query: 308 MMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGC 367
           M +   RPN  T SS L AC  +  LK G++VHGF++R     N  V S+L++MY+ C  
Sbjct: 170 MGLNGERPNSVTVSSILPACTDLKDLKSGREVHGFVVRNGMGGNVFVSSALVNMYASCLS 229

Query: 368 LNDGRQVFDLTD----------------NKE------------------NSMLWNTMISA 393
           +   + VFD                   NKE                  N   WN +I  
Sbjct: 230 IRQAQLVFDSMSRRDTVSWNVLITAYFLNKECEKGLSVFGRMMSEGVGLNYASWNAVIGG 289

Query: 394 LTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLT---------YFES 444
             Q+G  E+A+ +   M  S  KP++IT+  +L ACT+   ++ G           +F+ 
Sbjct: 290 CMQNGRTEKALEVLSRMQNSGFKPNQITITSVLPACTNLESLRGGKQIHGYIFRHWFFQD 349

Query: 445 MTHDLGIIPNQEHHACLIELLAQAGCSD-QLMNQLEKMPYEHDSYLWNALHGVCRIHGNI 503
           +T    ++               A C D +L  ++  M  + D+  WN +     +HGN 
Sbjct: 350 LTTTTALV------------FMYAKCGDLELSRRVFSMMTKRDTVSWNTMIIATSMHGNG 397

Query: 504 DMGRKVVDQLIDQN--PQSSATHGLLS 528
           +    +  +++D    P S    G+LS
Sbjct: 398 EEALLLFREMVDSGVRPNSVTFTGVLS 424



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 58/205 (28%), Positives = 92/205 (44%), Gaps = 31/205 (15%)

Query: 226 IVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSW 285
            +  Y+  G+L  AR LFD+    D+ TWT ++S   K G    A + +N+   KN V  
Sbjct: 17  FIKVYSNSGDLQRARHLFDKIPQPDLPTWTILISALTKHGRSLEAIQYYNDFRHKNCVE- 75

Query: 286 TTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIR 345
                                        P++    S   ACAS+  + + K+VH   IR
Sbjct: 76  -----------------------------PDKLLLLSVAKACASLRDVMNAKRVHEDAIR 106

Query: 346 TNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIR 405
             F S+ ++ ++LIDMY KC C    R VF+    ++  + W +M S     G   +A+ 
Sbjct: 107 FGFCSDVLLGNALIDMYGKCRCSEGARLVFEGMPFRD-VISWTSMASCYVNCGLLREALG 165

Query: 406 LFHDMVRSSVKPDKITLAVILNACT 430
            F  M  +  +P+ +T++ IL ACT
Sbjct: 166 AFRKMGLNGERPNSVTVSSILPACT 190


>gi|326522488|dbj|BAK07706.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 799

 Score =  318 bits (816), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 167/505 (33%), Positives = 284/505 (56%), Gaps = 10/505 (1%)

Query: 90  LSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERD 149
           + N LI++Y + G    ARKVFD++ VK++ S+  +L  Y+  G +  AR + D M ER+
Sbjct: 287 VQNSLITLYLRMGDAAAARKVFDEMDVKDVVSWTALLDVYSESGDLDGARRVLDAMPERN 346

Query: 150 VVSWNTMIIGYAKSGAVEEGLKFYKVLR----RFSISCNEFSFAGILTICVKLEELKLTR 205
            VSW T+I  + + G   E +K Y  +     R +ISC    F+ +L+ C  LE+L+   
Sbjct: 347 EVSWGTLIARHEQRGNAAEAVKLYSQMLADGCRPNISC----FSSVLSACATLEDLRGGA 402

Query: 206 QVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLG 265
           ++H + L  G  +NV +SSS++D Y KC +  DA+ +FD    ++++ W ++ SGY+  G
Sbjct: 403 RIHARSLKMGSSTNVFVSSSLIDMYCKCKKCRDAQTIFDTLPEKNIVCWNSLASGYSYNG 462

Query: 266 DMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLC 325
            M  A  LF +MP +N  SW T+I+GY +N     AL  F  M+     P + TFSS L 
Sbjct: 463 KMVEAMYLFKKMPARNLASWNTIISGYAQNRQFVDALRSFNAMLASGQVPGEITFSSVLL 522

Query: 326 ACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSM 385
           ACA++ SL  GK  H   I+     +  + ++L DMY+K G L   +++F     + N +
Sbjct: 523 ACANLCSLVTGKMAHAKTIKLGMEESIFIGTALSDMYAKSGDLQSSKRMFYQMPER-NDV 581

Query: 386 LWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESM 445
            W  MI  L ++G  E++I LF DM+ + + P++ T   +L AC+H GLV++ + YFE M
Sbjct: 582 TWTAMIQGLAENGLAEESILLFEDMMATGMTPNEHTFLALLFACSHGGLVEQAIHYFEKM 641

Query: 446 THDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDM 505
               GI P ++H+ C++++LA+AG   +    L K P + ++  W AL   C  + N ++
Sbjct: 642 -QAWGISPKEKHYTCMVDVLARAGRLIEAEALLMKTPSKSEANSWAALLSACNTYKNEEI 700

Query: 506 GRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIEN 565
           G +   +L +    ++A + LLS++Y++ G+ +   ++R L+     KK+   SW+++  
Sbjct: 701 GERAAKRLHELGKDNTAGYVLLSNMYASCGRWKDAARIRVLMKGTTLKKDGGCSWVQVRG 760

Query: 566 KVHAFSVSDSLHPMRDVLYSVLEQL 590
           + HAF   ++ HP+   +  +L+ L
Sbjct: 761 QYHAFFSWEAKHPLSMEINEILDLL 785



 Score =  192 bits (488), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 135/493 (27%), Positives = 227/493 (46%), Gaps = 72/493 (14%)

Query: 68  LKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNL---FSYNN 124
           L L   +H H   +     T+ +++HL++ Y       +  + F           F+Y+ 
Sbjct: 99  LPLALSLHAHAVRSGVAADTS-VASHLLTTYAAFARAAECDRAFGDCVAAGAASPFTYDF 157

Query: 125 MLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYK---------- 174
           M+  +   G +  AR LFD M ER VVS+ TM+    K G V E ++ Y+          
Sbjct: 158 MVHEHVKAGDIASARGLFDGMPERSVVSYTTMVDALMKRGRVAEAVELYEQCPSGSVAFF 217

Query: 175 ------------------VLRRFSISC----NEFSFAGILTICVKLEELKLTRQVHGQVL 212
                             V R+  +SC    N  +F  ++  CV   E  L   + G  +
Sbjct: 218 TATISGFVRNELHHNALGVFRKM-VSCGVRPNGITFVCMIKACVGAGEFGLAMSIVGSAI 276

Query: 213 VTGFL-SNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESAS 271
            + F  S++ + +S++  Y + G+ + AR++FDE D +DV++WT ++  Y++ GD++ A 
Sbjct: 277 KSNFFESSIEVQNSLITLYLRMGDAAAARKVFDEMDVKDVVSWTALLDVYSESGDLDGAR 336

Query: 272 KLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIV 331
           ++ + MPE+N VSW TLIA + + G   +A++L+++M+    RPN   FSS L ACA++ 
Sbjct: 337 RVLDAMPERNEVSWGTLIARHEQRGNAAEAVKLYSQMLADGCRPNISCFSSVLSACATLE 396

Query: 332 SLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNK---------- 381
            L+ G ++H   ++    +N  V SSLIDMY KC    D + +FD    K          
Sbjct: 397 DLRGGARIHARSLKMGSSTNVFVSSSLIDMYCKCKKCRDAQTIFDTLPEKNIVCWNSLAS 456

Query: 382 --------------------ENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKIT 421
                                N   WNT+IS   Q+     A+R F+ M+ S   P +IT
Sbjct: 457 GYSYNGKMVEAMYLFKKMPARNLASWNTIISGYAQNRQFVDALRSFNAMLASGQVPGEIT 516

Query: 422 LAVILNACTH-SGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEK 480
            + +L AC +   LV   + +  + T  LG+  +      L ++ A++G          +
Sbjct: 517 FSSVLLACANLCSLVTGKMAH--AKTIKLGMEESIFIGTALSDMYAKSGDLQSSKRMFYQ 574

Query: 481 MPYEHDSYLWNAL 493
           MP E +   W A+
Sbjct: 575 MP-ERNDVTWTAM 586



 Score =  157 bits (397), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 102/390 (26%), Positives = 180/390 (46%), Gaps = 47/390 (12%)

Query: 30  KGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTF 89
           +G  +EA+     +   G R      + +L  CA  + L+ G R+H    L    +   F
Sbjct: 360 RGNAAEAVKLYSQMLADGCRPNISCFSSVLSACATLEDLRGGARIHAR-SLKMGSSTNVF 418

Query: 90  LSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERD 149
           +S+ LI MY KC    DA+ +FD +P KN+  +N++ SGY+  G M  A  LF  M  R+
Sbjct: 419 VSSSLIDMYCKCKKCRDAQTIFDTLPEKNIVCWNSLASGYSYNGKMVEAMYLFKKMPARN 478

Query: 150 VVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHG 209
           + SWNT+I GYA++    + L+ +  +        E +F+ +L  C  L  L   +  H 
Sbjct: 479 LASWNTIISGYAQNRQFVDALRSFNAMLASGQVPGEITFSSVLLACANLCSLVTGKMAHA 538

Query: 210 QVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMES 269
           + +  G   ++ I +++ D YAK G+L  ++R+F +   R+ +TWT M+ G A+      
Sbjct: 539 KTIKLGMEESIFIGTALSDMYAKSGDLQSSKRMFYQMPERNDVTWTAMIQGLAE------ 592

Query: 270 ASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACAS 329
                                    NGL ++++ LF  MM   + PN+HTF + L AC+ 
Sbjct: 593 -------------------------NGLAEESILLFEDMMATGMTPNEHTFLALLFACS- 626

Query: 330 IVSLKHG----KQVHGF--LIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKEN 383
                HG    + +H F  +            + ++D+ ++ G L +   +   T +K  
Sbjct: 627 -----HGGLVEQAIHYFEKMQAWGISPKEKHYTCMVDVLARAGRLIEAEALLMKTPSKSE 681

Query: 384 SMLWNTMISALTQHGYD---EQAIRLFHDM 410
           +  W  ++SA   +  +   E+A +  H++
Sbjct: 682 ANSWAALLSACNTYKNEEIGERAAKRLHEL 711



 Score = 99.4 bits (246), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 74/297 (24%), Positives = 124/297 (41%), Gaps = 65/297 (21%)

Query: 199 EELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDE---TDARDVLTWT 255
           E L L   +H   + +G  ++  ++S ++  YA     ++  R F +     A    T+ 
Sbjct: 97  ERLPLALSLHAHAVRSGVAADTSVASHLLTTYAAFARAAECDRAFGDCVAAGAASPFTYD 156

Query: 256 TMVSGYAKLGDMESASKLFNEMPEKNPVSWTTL--------------------------- 288
            MV  + K GD+ SA  LF+ MPE++ VS+TT+                           
Sbjct: 157 FMVHEHVKAGDIASARGLFDGMPERSVVSYTTMVDALMKRGRVAEAVELYEQCPSGSVAF 216

Query: 289 ----IAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLI 344
               I+G+ RN L   AL +F +M+   +RPN  TF   + AC           + G  I
Sbjct: 217 FTATISGFVRNELHHNALGVFRKMVSCGVRPNGITFVCMIKACVGAGEFGLAMSIVGSAI 276

Query: 345 RTNFRSNTI-VMSSLIDMYSKCGCLNDGRQVFDLTDNKE--------------------- 382
           ++NF  ++I V +SLI +Y + G     R+VFD  D K+                     
Sbjct: 277 KSNFFESSIEVQNSLITLYLRMGDAAAARKVFDEMDVKDVVSWTALLDVYSESGDLDGAR 336

Query: 383 ---------NSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACT 430
                    N + W T+I+   Q G   +A++L+  M+    +P+    + +L+AC 
Sbjct: 337 RVLDAMPERNEVSWGTLIARHEQRGNAAEAVKLYSQMLADGCRPNISCFSSVLSACA 393


>gi|356521082|ref|XP_003529187.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g13230, mitochondrial-like [Glycine max]
          Length = 780

 Score =  318 bits (815), Expect = 5e-84,   Method: Compositional matrix adjust.
 Identities = 169/475 (35%), Positives = 281/475 (59%), Gaps = 33/475 (6%)

Query: 117 KNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVL 176
           ++L+    +L  Y   G +  A+  F+ M + D++ W+ MI  YA+S   +E L+ +  +
Sbjct: 238 RDLYVGIALLELYTKSGEIAEAQQFFEEMPKDDLIPWSLMISRYAQSDKSKEALELFCRM 297

Query: 177 RRFSISC-NEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGE 235
           R+ S+   N F+FA +L  C  L  L L  Q+H  VL  G  SNV +S++++D YAKC  
Sbjct: 298 RQSSVVVPNNFTFASVLQACASLVLLNLGNQIHSCVLKVGLDSNVFVSNALMDVYAKC-- 355

Query: 236 LSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRN 295
                                        G++E++ KLF    EKN V+W T+I GY + 
Sbjct: 356 -----------------------------GEIENSVKLFTGSTEKNEVAWNTIIVGYVQL 386

Query: 296 GLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVM 355
           G G+KAL LF+ M+ L I+P + T+SS L A AS+V+L+ G+Q+H   I+T +  +++V 
Sbjct: 387 GDGEKALNLFSNMLGLDIQPTEVTYSSVLRASASLVALEPGRQIHSLTIKTMYNKDSVVA 446

Query: 356 SSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSV 415
           +SLIDMY+KCG ++D R  FD  D K++ + WN +I   + HG   +A+ LF  M +S+ 
Sbjct: 447 NSLIDMYAKCGRIDDARLTFDKMD-KQDEVSWNALICGYSIHGLGMEALNLFDMMQQSNS 505

Query: 416 KPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLM 475
           KP+K+T   +L+AC+++GL+ +G  +F+SM  D GI P  EH+ C++ LL ++G  D+ +
Sbjct: 506 KPNKLTFVGVLSACSNAGLLDKGRAHFKSMLQDYGIEPCIEHYTCMVWLLGRSGQFDEAV 565

Query: 476 NQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALG 535
             + ++P++    +W AL G C IH N+D+G+    ++++  PQ  ATH LLS++Y+   
Sbjct: 566 KLIGEIPFQPSVMVWRALLGACVIHKNLDLGKVCAQRVLEMEPQDDATHVLLSNMYATAK 625

Query: 536 KGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQL 590
           +   V  VR+ + +++ KKE  +SW+E +  VH F+V D+ HP   +++++LE L
Sbjct: 626 RWDNVAYVRKNMKKKKVKKEPGLSWVENQGVVHYFTVGDTSHPNIKLIFAMLEWL 680



 Score =  166 bits (419), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 121/433 (27%), Positives = 212/433 (48%), Gaps = 51/433 (11%)

Query: 120 FSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRF 179
           F    ++  Y+  G +  AR +FD +  +D+VSW  M+  YA++   E+ L  +  +R  
Sbjct: 140 FVGTALIDAYSVCGNVDAARQVFDGIYFKDMVSWTGMVACYAENYCHEDSLLLFCQMRIM 199

Query: 180 SISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDA 239
               N F+ +  L  C  LE  K+ + VHG  L   +  ++ +  ++++ Y K GE+++A
Sbjct: 200 GYRPNNFTISAALKSCNGLEAFKVGKSVHGCALKVCYDRDLYVGIALLELYTKSGEIAEA 259

Query: 240 RRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQ 299
           ++ F+E    D++ W+ M+S YA+                               +   +
Sbjct: 260 QQFFEEMPKDDLIPWSLMISRYAQ-------------------------------SDKSK 288

Query: 300 KALELFTRMMILR-IRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSL 358
           +ALELF RM     + PN  TF+S L ACAS+V L  G Q+H  +++    SN  V ++L
Sbjct: 289 EALELFCRMRQSSVVVPNNFTFASVLQACASLVLLNLGNQIHSCVLKVGLDSNVFVSNAL 348

Query: 359 IDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPD 418
           +D+Y+KCG + +  ++F  +  K N + WNT+I    Q G  E+A+ LF +M+   ++P 
Sbjct: 349 MDVYAKCGEIENSVKLFTGSTEK-NEVAWNTIIVGYVQLGDGEKALNLFSNMLGLDIQPT 407

Query: 419 KITLAVILNACTHSGLVQEG-----LTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQ 473
           ++T + +L A      ++ G     LT  ++M +   ++ N      LI++ A+ G  D 
Sbjct: 408 EVTYSSVLRASASLVALEPGRQIHSLT-IKTMYNKDSVVANS-----LIDMYAKCGRIDD 461

Query: 474 LMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLS--SIY 531
                +KM  + D   WNAL     IHG   +G + ++ L D   QS++    L+   + 
Sbjct: 462 ARLTFDKMD-KQDEVSWNALICGYSIHG---LGMEALN-LFDMMQQSNSKPNKLTFVGVL 516

Query: 532 SALGKGRLVEKVR 544
           SA     L++K R
Sbjct: 517 SACSNAGLLDKGR 529



 Score =  119 bits (299), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 86/329 (26%), Positives = 144/329 (43%), Gaps = 67/329 (20%)

Query: 13  KNLPNNCLIQSFLSLISKGQLSEAISSLDLLA---QRGIRLPAE-TLAFILQQCAESKSL 68
           + +P + LI   L +    Q  ++  +L+L     Q  + +P   T A +LQ CA    L
Sbjct: 264 EEMPKDDLIPWSLMISRYAQSDKSKEALELFCRMRQSSVVVPNNFTFASVLQACASLVLL 323

Query: 69  KLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSG 128
            LG ++H                    S   K G D             N+F  N ++  
Sbjct: 324 NLGNQIH--------------------SCVLKVGLD------------SNVFVSNALMDV 351

Query: 129 YANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSF 188
           YA  G ++++  LF    E++ V+WNT+I+GY + G  E+ L  +  +    I   E ++
Sbjct: 352 YAKCGEIENSVKLFTGSTEKNEVAWNTIIVGYVQLGDGEKALNLFSNMLGLDIQPTEVTY 411

Query: 189 AGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDA 248
           + +L     L  L+  RQ+H   + T +  + V+++S++D YAKCG + DAR  FD+ D 
Sbjct: 412 SSVLRASASLVALEPGRQIHSLTIKTMYNKDSVVANSLIDMYAKCGRIDDARLTFDKMDK 471

Query: 249 RDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRM 308
           +D ++W  ++ G                               Y+ +GLG +AL LF  M
Sbjct: 472 QDEVSWNALICG-------------------------------YSIHGLGMEALNLFDMM 500

Query: 309 MILRIRPNQHTFSSCLCACASIVSLKHGK 337
                +PN+ TF   L AC++   L  G+
Sbjct: 501 QQSNSKPNKLTFVGVLSACSNAGLLDKGR 529


>gi|15237421|ref|NP_197188.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75174141|sp|Q9LFL5.1|PP390_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g16860
 gi|9755687|emb|CAC01699.1| putative protein [Arabidopsis thaliana]
 gi|332004967|gb|AED92350.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 850

 Score =  318 bits (815), Expect = 5e-84,   Method: Compositional matrix adjust.
 Identities = 184/584 (31%), Positives = 297/584 (50%), Gaps = 47/584 (8%)

Query: 18  NCLIQSFLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLH 77
           N +I+S+  L       E  S +    + G R    TL  +L  CA   +  LGK++H  
Sbjct: 197 NSIIESYAKLGKPKVALEMFSRMT--NEFGCRPDNITLVNVLPPCASLGTHSLGKQLHC- 253

Query: 78  LKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKH 137
             +T       F+ N L+ MY KCG   +A  VF  + VK++ S+N M++GY+ +G  + 
Sbjct: 254 FAVTSEMIQNMFVGNCLVDMYAKCGMMDEANTVFSNMSVKDVVSWNAMVAGYSQIGRFED 313

Query: 138 ARNLFDNMAER----DVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILT 193
           A  LF+ M E     DVV+W+  I GYA+ G   E L   + +    I  NE +   +L+
Sbjct: 314 AVRLFEKMQEEKIKMDVVTWSAAISGYAQRGLGYEALGVCRQMLSSGIKPNEVTLISVLS 373

Query: 194 ICVKLEELKLTRQVHGQVLV-------TGFLSNVVISSSIVDAYAKCGELSDARRLFDET 246
            C  +  L   +++H   +         G     ++ + ++D YAKC ++  AR +FD  
Sbjct: 374 GCASVGALMHGKEIHCYAIKYPIDLRKNGHGDENMVINQLIDMYAKCKKVDTARAMFDSL 433

Query: 247 DARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFT 306
             +                             E++ V+WT +I GY+++G   KALEL +
Sbjct: 434 SPK-----------------------------ERDVVTWTVMIGGYSQHGDANKALELLS 464

Query: 307 RMM--ILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSS-LIDMYS 363
            M     + RPN  T S  L ACAS+ +L+ GKQ+H + +R    +  + +S+ LIDMY+
Sbjct: 465 EMFEEDCQTRPNAFTISCALVACASLAALRIGKQIHAYALRNQQNAVPLFVSNCLIDMYA 524

Query: 364 KCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLA 423
           KCG ++D R VFD    K N + W ++++    HGY E+A+ +F +M R   K D +TL 
Sbjct: 525 KCGSISDARLVFDNMMAK-NEVTWTSLMTGYGMHGYGEEALGIFDEMRRIGFKLDGVTLL 583

Query: 424 VILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPY 483
           V+L AC+HSG++ +G+ YF  M    G+ P  EH+ACL++LL +AG  +  +  +E+MP 
Sbjct: 584 VVLYACSHSGMIDQGMEYFNRMKTVFGVSPGPEHYACLVDLLGRAGRLNAALRLIEEMPM 643

Query: 484 EHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKV 543
           E    +W A    CRIHG +++G    +++ +       ++ LLS++Y+  G+ + V ++
Sbjct: 644 EPPPVVWVAFLSCCRIHGKVELGEYAAEKITELASNHDGSYTLLSNLYANAGRWKDVTRI 703

Query: 544 RQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVL 587
           R L+  +  KK    SW+E       F V D  HP    +Y VL
Sbjct: 704 RSLMRHKGVKKRPGCSWVEGIKGTTTFFVGDKTHPHAKEIYQVL 747



 Score =  211 bits (536), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 135/480 (28%), Positives = 231/480 (48%), Gaps = 58/480 (12%)

Query: 54  TLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDK 113
           T  F+ + C E  S++ G+  H  L L        F+ N L++MY +C S  DARKVFD+
Sbjct: 129 TFPFVFKACGEISSVRCGESAHA-LSLVTGFISNVFVGNALVAMYSRCRSLSDARKVFDE 187

Query: 114 IPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFY 173
           + V ++ S+N+++  YA LG  K A  +F  M                            
Sbjct: 188 MSVWDVVSWNSIIESYAKLGKPKVALEMFSRMTN-------------------------- 221

Query: 174 KVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKC 233
                F    +  +   +L  C  L    L +Q+H   + +  + N+ + + +VD YAKC
Sbjct: 222 ----EFGCRPDNITLVNVLPPCASLGTHSLGKQLHCFAVTSEMIQNMFVGNCLVDMYAKC 277

Query: 234 GELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEK----NPVSWTTLI 289
           G + +A  +F     +DV++W  MV+GY+++G  E A +LF +M E+    + V+W+  I
Sbjct: 278 GMMDEANTVFSNMSVKDVVSWNAMVAGYSQIGRFEDAVRLFEKMQEEKIKMDVVTWSAAI 337

Query: 290 AGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIR--TN 347
           +GY + GLG +AL +  +M+   I+PN+ T  S L  CAS+ +L HGK++H + I+   +
Sbjct: 338 SGYAQRGLGYEALGVCRQMLSSGIKPNEVTLISVLSGCASVGALMHGKEIHCYAIKYPID 397

Query: 348 FRSN-----TIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSML-WNTMISALTQHGYDE 401
            R N      +V++ LIDMY+KC  ++  R +FD    KE  ++ W  MI   +QHG   
Sbjct: 398 LRKNGHGDENMVINQLIDMYAKCKKVDTARAMFDSLSPKERDVVTWTVMIGGYSQHGDAN 457

Query: 402 QAIRLFHDMVRSS--VKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHA 459
           +A+ L  +M       +P+  T++  L AC     ++ G        H    + NQ++  
Sbjct: 458 KALELLSEMFEEDCQTRPNAFTISCALVACASLAALRIG-----KQIHAYA-LRNQQNAV 511

Query: 460 ------CLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQL 513
                 CLI++ A+ G         + M  +++   W +L     +HG  +    + D++
Sbjct: 512 PLFVSNCLIDMYAKCGSISDARLVFDNMMAKNE-VTWTSLMTGYGMHGYGEEALGIFDEM 570



 Score =  170 bits (430), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 127/494 (25%), Positives = 221/494 (44%), Gaps = 69/494 (13%)

Query: 73  RVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYN---NMLSGY 129
           + H ++K++   T    ++   I    KC +    + +  K+    + + N   +++S Y
Sbjct: 13  KSHQYIKVSLFSTSAPEITPPFIH---KCKTISQVKLIHQKLLSFGILTLNLTSHLISTY 69

Query: 130 ANLGMMKHARNLFDNMAERD--VVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFS 187
            ++G + HA +L       D  V  WN++I  Y  +G   + L  + ++   S + + ++
Sbjct: 70  ISVGCLSHAVSLLRRFPPSDAGVYHWNSLIRSYGDNGCANKCLYLFGLMHSLSWTPDNYT 129

Query: 188 FAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETD 247
           F  +   C ++  ++     H   LVTGF+SNV + +++V  Y++C  LSDAR++FDE  
Sbjct: 130 FPFVFKACGEISSVRCGESAHALSLVTGFISNVFVGNALVAMYSRCRSLSDARKVFDEMS 189

Query: 248 ARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTR 307
             DV++W +++  YAKLG                                 + ALE+F+R
Sbjct: 190 VWDVVSWNSIIESYAKLGK-------------------------------PKVALEMFSR 218

Query: 308 MM-ILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCG 366
           M      RP+  T  + L  CAS+ +   GKQ+H F + +    N  V + L+DMY+KCG
Sbjct: 219 MTNEFGCRPDNITLVNVLPPCASLGTHSLGKQLHCFAVTSEMIQNMFVGNCLVDMYAKCG 278

Query: 367 CLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVIL 426
            +++   VF     K+  + WN M++  +Q G  E A+RLF  M    +K D +T +  +
Sbjct: 279 MMDEANTVFSNMSVKD-VVSWNAMVAGYSQIGRFEDAVRLFEKMQEEKIKMDVVTWSAAI 337

Query: 427 NACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHD 486
           +     GL  E L     M    GI PN+     LI +L+       LM+  E   Y   
Sbjct: 338 SGYAQRGLGYEALGVCRQMLSS-GIKPNE---VTLISVLSGCASVGALMHGKEIHCYAIK 393

Query: 487 SYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQL 546
             +    +G    HG+ +M   V++QLID                    K + V+  R +
Sbjct: 394 YPIDLRKNG----HGDENM---VINQLIDM-----------------YAKCKKVDTARAM 429

Query: 547 INERQFKKEQAISW 560
            +    K+   ++W
Sbjct: 430 FDSLSPKERDVVTW 443


>gi|225448607|ref|XP_002274158.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Vitis vinifera]
          Length = 820

 Score =  318 bits (815), Expect = 5e-84,   Method: Compositional matrix adjust.
 Identities = 174/498 (34%), Positives = 262/498 (52%), Gaps = 62/498 (12%)

Query: 94  LISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSW 153
           LI MY KCGS  DAR VFD              + + N G+                  W
Sbjct: 363 LIDMYSKCGSLHDARSVFD--------------TNFINCGVN---------------TPW 393

Query: 154 NTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLV 213
           N MI GY++SG  +E L+ Y  + +  I+ + +++  +       + L+  R VHG VL 
Sbjct: 394 NAMISGYSQSGCSQEALELYVQMCQNGITSDLYTYCSVFNAIAASKSLQFGRVVHGMVLK 453

Query: 214 TGF-LSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASK 272
            G  L  V ++++I DAY+KCG L D R                               K
Sbjct: 454 CGLDLMVVSVNNAIADAYSKCGFLEDVR-------------------------------K 482

Query: 273 LFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVS 332
           +F+ M E++ VSWTTL+  Y+++ LG++AL  F  M      PNQ TFSS L +CAS+  
Sbjct: 483 VFDRMEERDIVSWTTLVTAYSQSSLGEEALATFCLMREEGFAPNQFTFSSVLISCASLCF 542

Query: 333 LKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMIS 392
           L++G+QVHG L +    +   + S+LIDMY+KCG + +  +VFD   N +  + W  +IS
Sbjct: 543 LEYGRQVHGLLCKAGLDTEKCIESALIDMYAKCGSITEAGKVFDKISNPD-IVSWTAIIS 601

Query: 393 ALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGII 452
              QHG  E A++LF  M  S +K + +TL  +L AC+H G+V+EGL YF+ M    G++
Sbjct: 602 GYAQHGLVEDALQLFRRMELSGIKANAVTLLCVLFACSHGGMVEEGLFYFQQMEDGYGVV 661

Query: 453 PNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQ 512
           P  EH+AC+I+LL + G  D  M  + KMP E +  +W  L G CR+HGN+++G     +
Sbjct: 662 PEMEHYACIIDLLGRVGRLDDAMEFIRKMPMEPNEMVWQTLLGGCRVHGNVELGEIAARK 721

Query: 513 LIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSV 572
           ++   P+ SAT+ LLS+ Y   G       +R ++ ++  KKE   SWI ++ +VH F  
Sbjct: 722 ILSIRPEYSATYVLLSNTYIETGSYEDGLSLRNVMKDQGVKKEPGYSWISVKGRVHKFYS 781

Query: 573 SDSLHPMRDVLYSVLEQL 590
            D  HP +  +Y  LE+L
Sbjct: 782 GDQQHPQKKEIYVKLEEL 799



 Score =  178 bits (452), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 115/383 (30%), Positives = 176/383 (45%), Gaps = 64/383 (16%)

Query: 58  ILQQCAESKSLKLGKRVH-LHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPV 116
           +L+ CAE  S++  K VH L LK          L NH   +Y KC               
Sbjct: 124 VLRDCAEKGSIREAKAVHGLVLKSNFEDKDLMVLFNHAAHVYSKCSE------------- 170

Query: 117 KNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVL 176
                              + A  +FD M +R+V SW  MI+G  + G   +G KF+  +
Sbjct: 171 ------------------FRAACGVFDEMPQRNVFSWTVMIVGSTEHGLFFDGFKFFCEM 212

Query: 177 RRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGEL 236
               I  ++F+++ I+  C+ L+ L+L + VH Q+++ GF +++ +S+S+++ YA     
Sbjct: 213 LNSGILPDKFAYSAIIQSCIGLDSLELGKMVHAQIVMRGFATHIFVSTSLLNMYA----- 267

Query: 237 SDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNG 296
                                     KLG +E +  +FN M E N VSW  +I+G T NG
Sbjct: 268 --------------------------KLGSIEDSYWVFNMMTEHNQVSWNAMISGCTSNG 301

Query: 297 LGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMS 356
           L  +A +LF RM      PN +T  S   A   +V +  GK+V           N +V +
Sbjct: 302 LHLEAFDLFVRMKNGACTPNMYTLVSVSKAVGKLVDVNMGKEVQNCASELGIEGNVLVGT 361

Query: 357 SLIDMYSKCGCLNDGRQVFDLT-DNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSV 415
           +LIDMYSKCG L+D R VFD    N   +  WN MIS  +Q G  ++A+ L+  M ++ +
Sbjct: 362 ALIDMYSKCGSLHDARSVFDTNFINCGVNTPWNAMISGYSQSGCSQEALELYVQMCQNGI 421

Query: 416 KPDKITLAVILNACTHSGLVQEG 438
             D  T   + NA   S  +Q G
Sbjct: 422 TSDLYTYCSVFNAIAASKSLQFG 444



 Score =  153 bits (386), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 120/449 (26%), Positives = 194/449 (43%), Gaps = 90/449 (20%)

Query: 3   SNFSPRGINRKNLPNNCLIQSFLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQC 62
           +NF   G+N    P N +I  +      G   EA+     + Q GI     T   +    
Sbjct: 382 TNFINCGVNT---PWNAMISGY---SQSGCSQEALELYVQMCQNGITSDLYTYCSVFNAI 435

Query: 63  AESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSY 122
           A SKSL+ G+ VH                     M  KCG D+             + S 
Sbjct: 436 AASKSLQFGRVVH--------------------GMVLKCGLDL------------MVVSV 463

Query: 123 NNMLS-GYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSI 181
           NN ++  Y+  G ++  R +FD M ERD+VSW T++  Y++S   EE L  + ++R    
Sbjct: 464 NNAIADAYSKCGFLEDVRKVFDRMEERDIVSWTTLVTAYSQSSLGEEALATFCLMREEGF 523

Query: 182 SCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARR 241
           + N+F+F+ +L  C  L  L+  RQVHG +   G  +   I S+++D YAKCG +++A +
Sbjct: 524 APNQFTFSSVLISCASLCFLEYGRQVHGLLCKAGLDTEKCIESALIDMYAKCGSITEAGK 583

Query: 242 LFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKA 301
           +FD+    D+++WT ++SGYA+                               +GL + A
Sbjct: 584 VFDKISNPDIVSWTAIISGYAQ-------------------------------HGLVEDA 612

Query: 302 LELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQV-HGFLIRTNFRSNTIVM----- 355
           L+LF RM +  I+ N  T    L AC+      HG  V  G            V+     
Sbjct: 613 LQLFRRMELSGIKANAVTLLCVLFACS------HGGMVEEGLFYFQQMEDGYGVVPEMEH 666

Query: 356 -SSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRS- 413
            + +ID+  + G L+D  +       + N M+W T++     HG     + L     R  
Sbjct: 667 YACIIDLLGRVGRLDDAMEFIRKMPMEPNEMVWQTLLGGCRVHG----NVELGEIAARKI 722

Query: 414 -SVKPDKITLAVIL-NACTHSGLVQEGLT 440
            S++P+     V+L N    +G  ++GL+
Sbjct: 723 LSIRPEYSATYVLLSNTYIETGSYEDGLS 751



 Score =  135 bits (341), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 107/450 (23%), Positives = 196/450 (43%), Gaps = 69/450 (15%)

Query: 58  ILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVK 117
           I+Q C    SL+LGK VH  + +    T                                
Sbjct: 227 IIQSCIGLDSLELGKMVHAQIVMRGFAT-------------------------------- 254

Query: 118 NLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLR 177
           ++F   ++L+ YA LG ++ +  +F+ M E + VSWN MI G   +G   E    +  ++
Sbjct: 255 HIFVSTSLLNMYAKLGSIEDSYWVFNMMTEHNQVSWNAMISGCTSNGLHLEAFDLFVRMK 314

Query: 178 RFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELS 237
             + + N ++   +     KL ++ + ++V       G   NV++ ++++D Y+KCG L 
Sbjct: 315 NGACTPNMYTLVSVSKAVGKLVDVNMGKEVQNCASELGIEGNVLVGTALIDMYSKCGSLH 374

Query: 238 DARRLFDET--DARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRN 295
           DAR +FD    +      W  M+SGY                               +++
Sbjct: 375 DARSVFDTNFINCGVNTPWNAMISGY-------------------------------SQS 403

Query: 296 GLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTI-V 354
           G  Q+ALEL+ +M    I  + +T+ S   A A+  SL+ G+ VHG +++       + V
Sbjct: 404 GCSQEALELYVQMCQNGITSDLYTYCSVFNAIAASKSLQFGRVVHGMVLKCGLDLMVVSV 463

Query: 355 MSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSS 414
            +++ D YSKCG L D R+VFD  + ++  + W T+++A +Q    E+A+  F  M    
Sbjct: 464 NNAIADAYSKCGFLEDVRKVFDRMEERD-IVSWTTLVTAYSQSSLGEEALATFCLMREEG 522

Query: 415 VKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQL 474
             P++ T + +L +C     ++ G      +    G+   +   + LI++ A+ G   + 
Sbjct: 523 FAPNQFTFSSVLISCASLCFLEYG-RQVHGLLCKAGLDTEKCIESALIDMYAKCGSITEA 581

Query: 475 MNQLEKMPYEHDSYLWNALHGVCRIHGNID 504
               +K+    D   W A+      HG ++
Sbjct: 582 GKVFDKIS-NPDIVSWTAIISGYAQHGLVE 610



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 75/281 (26%), Positives = 124/281 (44%), Gaps = 35/281 (12%)

Query: 191 ILTICVKLEELKLTRQVHGQVLVTGFLSN--VVISSSIVDAYAKCGELSDARRLFDETDA 248
           +L  C +   ++  + VHG VL + F     +V+ +     Y+KC E   A  +FDE   
Sbjct: 124 VLRDCAEKGSIREAKAVHGLVLKSNFEDKDLMVLFNHAAHVYSKCSEFRAACGVFDEMPQ 183

Query: 249 RDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRM 308
           R+V +WT M                               I G T +GL     + F  M
Sbjct: 184 RNVFSWTVM-------------------------------IVGSTEHGLFFDGFKFFCEM 212

Query: 309 MILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCL 368
           +   I P++  +S+ + +C  + SL+ GK VH  ++   F ++  V +SL++MY+K G +
Sbjct: 213 LNSGILPDKFAYSAIIQSCIGLDSLELGKMVHAQIVMRGFATHIFVSTSLLNMYAKLGSI 272

Query: 369 NDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNA 428
            D   VF++   + N + WN MIS  T +G   +A  LF  M   +  P+  TL  +  A
Sbjct: 273 EDSYWVFNMM-TEHNQVSWNAMISGCTSNGLHLEAFDLFVRMKNGACTPNMYTLVSVSKA 331

Query: 429 CTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAG 469
                 V  G    ++   +LGI  N      LI++ ++ G
Sbjct: 332 VGKLVDVNMG-KEVQNCASELGIEGNVLVGTALIDMYSKCG 371


>gi|125543632|gb|EAY89771.1| hypothetical protein OsI_11313 [Oryza sativa Indica Group]
          Length = 798

 Score =  318 bits (815), Expect = 5e-84,   Method: Compositional matrix adjust.
 Identities = 172/551 (31%), Positives = 282/551 (51%), Gaps = 74/551 (13%)

Query: 86  PTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNM 145
           P+      L+  Y + G   DA ++F ++P +N  SY  +L G  + G +  AR LFD M
Sbjct: 110 PSVVSFTSLLRGYVRHGLLADAIRLFQQMPERNHVSYTVLLGGLLDAGRVNEARRLFDEM 169

Query: 146 AERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTR 205
            +RDVV+W  M+ GY ++G + E    +  + +                           
Sbjct: 170 PDRDVVAWTAMLSGYCQAGRITEARALFDEMPK--------------------------- 202

Query: 206 QVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLG 265
                        NVV  ++++  YA+ GE++ AR+LF+    R+ ++WT M+ GY + G
Sbjct: 203 ------------RNVVSWTAMISGYAQNGEVNLARKLFEVMPERNEVSWTAMLVGYIQAG 250

Query: 266 DMESASKLFNEMPEKNPV--------------------------------SWTTLIAGYT 293
            +E A++LFN MPE +PV                                +W+ +I  Y 
Sbjct: 251 HVEDAAELFNAMPE-HPVAACNAMMVGFGQRGMVDAAKTVFEKMRERDDGTWSAMIKAYE 309

Query: 294 RNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTI 353
           +N    +AL  F  M+   +RPN  +  S L  CA++  L +G++VH  ++R +F  +  
Sbjct: 310 QNEFLMEALSTFREMLWRGVRPNYPSVISILTVCAALAVLDYGREVHAAMLRCSFDMDVF 369

Query: 354 VMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRS 413
            +S+LI MY KCG L+  ++VF   + K+  M WN+MI+   QHG  EQA+ +FHDM  +
Sbjct: 370 AVSALITMYIKCGNLDKAKRVFHTFEPKDIVM-WNSMITGYAQHGLGEQALGIFHDMRLA 428

Query: 414 SVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQ 473
            + PD IT    L AC+++G V+EG   F SMT +  I P  EH++C+++LL ++G  ++
Sbjct: 429 GMSPDGITYIGALTACSYTGKVKEGREIFNSMTVNSSIRPGAEHYSCMVDLLGRSGLVEE 488

Query: 474 LMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSA 533
             + ++ MP E D+ +W AL G CR+H N ++      +L++  P ++  + LLS IY++
Sbjct: 489 AFDLIKNMPVEPDAVIWGALMGACRMHRNAEIAEVAAKKLLELEPGNAGPYVLLSHIYTS 548

Query: 534 LGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSL-HPMRDVLYSVLEQLAG 592
           +G+     K+R+ I+ R   K    SWIE + +VH F+  D L HP    +  +LE+L G
Sbjct: 549 VGRWEDASKMRKFISSRNLNKSPGCSWIEYDKRVHLFTSGDVLAHPEHAAILRILEKLDG 608

Query: 593 QMGEDAPSLDA 603
            + E   S D 
Sbjct: 609 LLMESGYSADG 619



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 84/354 (23%), Positives = 146/354 (41%), Gaps = 81/354 (22%)

Query: 92  NHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVV 151
           N  I+   + G+   AR  F+ +P++   SYN +L+GY    +   A  LF  M  RD+ 
Sbjct: 21  NARIAHLARAGNIEGARAAFEAMPLRTTASYNALLAGYFRNRLPDAALGLFRRMPSRDLA 80

Query: 152 SWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQV 211
           S+N +I G +              LRR ++     + A I                    
Sbjct: 81  SYNALISGLS--------------LRRQTLPDAAAALASI-------------------- 106

Query: 212 LVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESAS 271
               F  +VV  +S++  Y + G L+DA RLF +   R+ +++T ++ G    G +  A 
Sbjct: 107 ---PFPPSVVSFTSLLRGYVRHGLLADAIRLFQQMPERNHVSYTVLLGGLLDAGRVNEAR 163

Query: 272 KLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIV 331
           +LF+EMP+++ V+WT +++GY + G   +A  LF  M                       
Sbjct: 164 RLFDEMPDRDVVAWTAMLSGYCQAGRITEARALFDEMP---------------------- 201

Query: 332 SLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMI 391
                            + N +  +++I  Y++ G +N  R++F++   + N + W  M+
Sbjct: 202 -----------------KRNVVSWTAMISGYAQNGEVNLARKLFEVMPER-NEVSWTAML 243

Query: 392 SALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESM 445
               Q G+ E A  LF+ M    V         ++      G+V    T FE M
Sbjct: 244 VGYIQAGHVEDAAELFNAMPEHPVA----ACNAMMVGFGQRGMVDAAKTVFEKM 293



 Score = 72.4 bits (176), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 73/289 (25%), Positives = 120/289 (41%), Gaps = 44/289 (15%)

Query: 258 VSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRM--------- 308
           ++  A+ G++E A   F  MP +   S+  L+AGY RN L   AL LF RM         
Sbjct: 24  IAHLARAGNIEGARAAFEAMPLRTTASYNALLAGYFRNRLPDAALGLFRRMPSRDLASYN 83

Query: 309 -MILRIRPNQHTFSSCLCACASI---------VSLKHGKQVHGFL---IR-------TNF 348
            +I  +   + T      A ASI          SL  G   HG L   IR        N 
Sbjct: 84  ALISGLSLRRQTLPDAAAALASIPFPPSVVSFTSLLRGYVRHGLLADAIRLFQQMPERNH 143

Query: 349 RSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFH 408
            S T+++  L+D     G +N+ R++FD   ++ + + W  M+S   Q G   +A  LF 
Sbjct: 144 VSYTVLLGGLLD----AGRVNEARRLFDEMPDR-DVVAWTAMLSGYCQAGRITEARALFD 198

Query: 409 DMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQA 468
           +M + +V    ++   +++    +G V      FE M        N+     ++    QA
Sbjct: 199 EMPKRNV----VSWTAMISGYAQNGEVNLARKLFEVMPER-----NEVSWTAMLVGYIQA 249

Query: 469 GCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQN 517
           G  +        MP EH     NA+       G +D  + V +++ +++
Sbjct: 250 GHVEDAAELFNAMP-EHPVAACNAMMVGFGQRGMVDAAKTVFEKMRERD 297



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 42/145 (28%), Positives = 74/145 (51%), Gaps = 5/145 (3%)

Query: 33  LSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSN 92
           L EA+S+   +  RG+R    ++  IL  CA    L  G+ VH  + L        F  +
Sbjct: 314 LMEALSTFREMLWRGVRPNYPSVISILTVCAALAVLDYGREVHAAM-LRCSFDMDVFAVS 372

Query: 93  HLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNM----AER 148
            LI+MY KCG+   A++VF     K++  +N+M++GYA  G+ + A  +F +M       
Sbjct: 373 ALITMYIKCGNLDKAKRVFHTFEPKDIVMWNSMITGYAQHGLGEQALGIFHDMRLAGMSP 432

Query: 149 DVVSWNTMIIGYAKSGAVEEGLKFY 173
           D +++   +   + +G V+EG + +
Sbjct: 433 DGITYIGALTACSYTGKVKEGREIF 457


>gi|345505218|gb|AEN99833.1| chlororespiratory reduction 4 [Crucihimalaya wallichii]
          Length = 617

 Score =  318 bits (815), Expect = 6e-84,   Method: Compositional matrix adjust.
 Identities = 180/534 (33%), Positives = 289/534 (54%), Gaps = 43/534 (8%)

Query: 42  LLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKC 101
           L+ + G+ +   +L+ +L+ C+    +K G ++H  LK T   +   FL N LI +Y KC
Sbjct: 115 LMLENGVSVDKFSLSLVLKACSRLGLVKEGMQIHGFLKKTGLWS-DLFLQNCLIGLYLKC 173

Query: 102 GSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAE--RDVVSWNTMIIG 159
           G    AR++FD++P ++  SYN+M+ GY   G  + AR LFD M E  ++++SWN+MI G
Sbjct: 174 GWLGFARQIFDRMPQRDSVSYNSMIDGYVKCGSTESARELFDLMPEEMKNLISWNSMISG 233

Query: 160 YAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSN 219
           YA++    +G+                               KL  ++  + L++     
Sbjct: 234 YAQT---SDGVDIAS---------------------------KLFSEMPDKDLISW---- 259

Query: 220 VVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPE 279
               +S++D Y K G + DA+ LFD    RDV+TW+TM+ GYAKLG +  A  LF++MP 
Sbjct: 260 ----NSMIDGYVKHGRIEDAKYLFDVMPRRDVVTWSTMIDGYAKLGFVHQAKTLFDQMPH 315

Query: 280 KNPVSWTTLIAGYTRNGLGQKALELFTRM-MILRIRPNQHTFSSCLCACASIVSLKHGKQ 338
           ++ VS+ ++IAGY +N    +ALE+F+ M     + P++ T    L A A +  L     
Sbjct: 316 RDVVSYNSMIAGYVQNRYNMEALEIFSDMEKESHLSPDETTLVIVLSAIAQLGRLSKAMD 375

Query: 339 VHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHG 398
           +H +++   F     +  +LIDMYSKCG +     VF   +NK     WN MI  L  HG
Sbjct: 376 MHLYIVEKQFFLGGKLGVALIDMYSKCGSIQHAMLVFKGIENKSIDH-WNAMIGGLAIHG 434

Query: 399 YDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHH 458
             E A  +   + R S+KPD IT   +LNAC+HSGLV+EGL  FE M     I P  +H+
Sbjct: 435 LGESAFDMLLQIERRSIKPDDITFVGLLNACSHSGLVKEGLLCFELMRRKHKIEPRLQHY 494

Query: 459 ACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNP 518
            C++++L+++G  +   N +E+MP E +  +W      C  H   + G  V   LI +  
Sbjct: 495 GCMVDILSRSGSIELAKNLIEEMPIEPNDVIWRTFLAACNHHKEFETGELVAKHLIWEAG 554

Query: 519 QSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSV 572
            + +++ LLS++Y++ GK + V ++R ++ ER+ +K    SWIE++ +VH F V
Sbjct: 555 YNPSSYVLLSNLYASFGKWKDVRRIRTIMKERKIEKVPGCSWIELDGRVHEFFV 608



 Score =  149 bits (377), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 107/381 (28%), Positives = 194/381 (50%), Gaps = 40/381 (10%)

Query: 149 DVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVH 208
           D   WN +I  ++        L  + ++    +S ++FS + +L  C +L  +K   Q+H
Sbjct: 89  DXYLWNAVIKSHSHGTDPRRALLLFCLMLENGVSVDKFSLSLVLKACSRLGLVKEGMQIH 148

Query: 209 GQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDME 268
           G +  TG  S++ + + ++  Y KCG L  AR++FD    RD +++ +M+ GY K G  E
Sbjct: 149 GFLKKTGLWSDLFLQNCLIGLYLKCGWLGFARQIFDRMPQRDSVSYNSMIDGYVKCGSTE 208

Query: 269 SASKLFNEMPE--KNPVSWTTLIAGYTRNGLGQK-ALELFTRMMILRIRPNQHTFSSCLC 325
           SA +LF+ MPE  KN +SW ++I+GY +   G   A +LF+ M      P++      L 
Sbjct: 209 SARELFDLMPEEMKNLISWNSMISGYAQTSDGVDIASKLFSEM------PDKD-----LI 257

Query: 326 ACASIVS--LKHGK-QVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKE 382
           +  S++   +KHG+ +   +L     R + +  S++ID Y+K G ++  + +FD   +++
Sbjct: 258 SWNSMIDGYVKHGRIEDAKYLFDVMPRRDVVTWSTMIDGYAKLGFVHQAKTLFDQMPHRD 317

Query: 383 NSMLWNTMISALTQHGYDEQAIRLFHDMVRSS-VKPDKITLAVILNACTHSGLVQEGLTY 441
             + +N+MI+   Q+ Y+ +A+ +F DM + S + PD+ TL ++L+A    G +      
Sbjct: 318 -VVSYNSMIAGYVQNRYNMEALEIFSDMEKESHLSPDETTLVIVLSAIAQLGRLS----- 371

Query: 442 FESMTHDLGIIPNQ-----EHHACLIELLAQAGCSDQLM---NQLEKMPYEHDSYLWNAL 493
            ++M   L I+  Q     +    LI++ ++ G     M     +E    +H    WNA+
Sbjct: 372 -KAMDMHLYIVEKQFFLGGKLGVALIDMYSKCGSIQHAMLVFKGIENKSIDH----WNAM 426

Query: 494 HGVCRIHGNIDMGRKVVDQLI 514
            G   IHG   +G    D L+
Sbjct: 427 IGGLAIHG---LGESAFDMLL 444



 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 57/202 (28%), Positives = 97/202 (48%), Gaps = 19/202 (9%)

Query: 206 QVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLG 265
           ++H +++  GF+ N  +++ IV A+A       +RR +    AR V     + S     G
Sbjct: 32  KIHARLVTNGFIKNPNLTTRIVLAFAA------SRRPYXVEFARFVFHEYXIRSFSPGGG 85

Query: 266 DMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLC 325
           D E            +   W  +I  ++     ++AL LF  M+   +  ++ + S  L 
Sbjct: 86  DXE------------DXYLWNAVIKSHSHGTDPRRALLLFCLMLENGVSVDKFSLSLVLK 133

Query: 326 ACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSM 385
           AC+ +  +K G Q+HGFL +T   S+  + + LI +Y KCG L   RQ+FD    ++ S+
Sbjct: 134 ACSRLGLVKEGMQIHGFLKKTGLWSDLFLQNCLIGLYLKCGWLGFARQIFDRMPQRD-SV 192

Query: 386 LWNTMISALTQHGYDEQAIRLF 407
            +N+MI    + G  E A  LF
Sbjct: 193 SYNSMIDGYVKCGSTESARELF 214



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 54/211 (25%), Positives = 100/211 (47%), Gaps = 15/211 (7%)

Query: 380 NKENSMLWNTMISALTQHGYD-EQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEG 438
           + E+  LWN +I + + HG D  +A+ LF  M+ + V  DK +L+++L AC+  GLV+EG
Sbjct: 86  DXEDXYLWNAVIKSHS-HGTDPRRALLLFCLMLENGVSVDKFSLSLVLKACSRLGLVKEG 144

Query: 439 LTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCR 498
           +          G+  +     CLI L  + G         ++MP + DS  +N++     
Sbjct: 145 MQ-IHGFLKKTGLWSDLFLQNCLIGLYLKCGWLGFARQIFDRMP-QRDSVSYNSMIDGYV 202

Query: 499 IHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAI 558
             G+ +  R++ D + ++     + + ++S  Y+    G  V+   +L +E     +  I
Sbjct: 203 KCGSTESARELFDLMPEEMKNLISWNSMISG-YAQTSDG--VDIASKLFSE--MPDKDLI 257

Query: 559 SWIE-IENKVHAFSVSDSLH-----PMRDVL 583
           SW   I+  V    + D+ +     P RDV+
Sbjct: 258 SWNSMIDGYVKHGRIEDAKYLFDVMPRRDVV 288


>gi|225459793|ref|XP_002284799.1| PREDICTED: pentatricopeptide repeat-containing protein At2g33680
           [Vitis vinifera]
 gi|302141693|emb|CBI18896.3| unnamed protein product [Vitis vinifera]
          Length = 703

 Score =  318 bits (815), Expect = 6e-84,   Method: Compositional matrix adjust.
 Identities = 167/483 (34%), Positives = 268/483 (55%), Gaps = 34/483 (7%)

Query: 123 NNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSIS 182
           N +++ YA  G +  A   F+  ++++ ++W+ MI GYA+SG  ++ LK +  +    I 
Sbjct: 248 NALVTMYAKCGSLDDALQTFETSSDKNSITWSAMITGYAQSGDSDKALKLFSSMHLSGIR 307

Query: 183 CNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRL 242
            +EF+F G++  C  L      +QVH  +L  GF S + + +++VD YAKC  + DAR  
Sbjct: 308 PSEFTFVGVINACSDLGAAWEGKQVHDYLLKLGFESQIYVMTALVDMYAKCSSIVDAR-- 365

Query: 243 FDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKAL 302
                                        K F+ + E + V WT++I GY +NG  + AL
Sbjct: 366 -----------------------------KGFDYLQEPDIVLWTSMIGGYVQNGENEDAL 396

Query: 303 ELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMY 362
            L+ RM +  I PN+ T +S L AC+S+ +L+ GKQ+H   ++  F     + S+L  MY
Sbjct: 397 SLYGRMEMEGILPNELTMASVLKACSSLAALEQGKQIHARTVKYGFGLEVPIGSALSTMY 456

Query: 363 SKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITL 422
           +KCGCL DG  VF     + + + WN MIS L+Q+G  ++A+ LF +M     KPD +T 
Sbjct: 457 AKCGCLKDGTLVFRRMPAR-DVISWNAMISGLSQNGCGKEALELFEEMQLEGTKPDYVTF 515

Query: 423 AVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMP 482
             IL+AC+H GLV+ G  YF  M  + G+ P  EH+AC++++L++AG   + +   E   
Sbjct: 516 VNILSACSHMGLVERGWGYFRMMFDEFGMDPRVEHYACMVDILSRAGKLKEAIEFTESAT 575

Query: 483 YEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEK 542
            +H   LW  + G CR + N ++G    ++L++   Q S+ + LLSSIYSALG+   VE+
Sbjct: 576 IDHGMCLWRIILGACRNYRNYELGAYAGEKLMELGSQESSAYVLLSSIYSALGRWEDVER 635

Query: 543 VRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQMGEDA--PS 600
           VR+++  R   KE   SWIE+++ VH F V D +HP    ++  L QL+ QM ++   P+
Sbjct: 636 VRRMMKLRGVSKEPGCSWIELKSGVHVFVVKDQMHPQIGDIHVELRQLSKQMKDEGYEPA 695

Query: 601 LDA 603
            D+
Sbjct: 696 TDS 698



 Score =  182 bits (461), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 134/519 (25%), Positives = 232/519 (44%), Gaps = 109/519 (21%)

Query: 48  IRLPAETLAFI-LQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVD 106
           + LP+    F  L Q   ++SL+ GK   LH ++ +  +   +++N L+++Y KC    +
Sbjct: 1   MTLPSNRSFFTALLQYTHNRSLQKGKA--LHAQIIKSSSSCVYIANSLVNLYAKCQRLRE 58

Query: 107 ARKVFDKIPVKNLFSYNNMLSGYANLGM--MKHARNLFDNM-AE---------------- 147
           A+ VF++I  K++ S+N +++GY+  G     H   LF  M AE                
Sbjct: 59  AKFVFERIQNKDVVSWNCIINGYSQHGPSGSSHVMELFQRMRAENTAPNAHTFAGVFTAA 118

Query: 148 ----------------------RDVVSWNTMIIGYAKSGAVEE----------------- 168
                                 RDV   ++++  Y K+G   E                 
Sbjct: 119 STLVDAAGGRLAHAVAIKMDSCRDVFVGSSLMNMYCKAGLTPEARKVFDTMPERNSVSWA 178

Query: 169 --------------GLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVT 214
                          L  ++++RR     NEF F  +L+     E +   +Q+H   +  
Sbjct: 179 TMISGYASQKLAAEALGLFRLMRREEEGENEFVFTSVLSALTLPELVNNGKQIHCIAVKN 238

Query: 215 GFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLF 274
           G LS V + +++V  YAKCG L DA + F+ +  ++ +TW+ M++GYA+ GD +      
Sbjct: 239 GLLSIVSVGNALVTMYAKCGSLDDALQTFETSSDKNSITWSAMITGYAQSGDSD------ 292

Query: 275 NEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLK 334
                                    KAL+LF+ M +  IRP++ TF   + AC+ + +  
Sbjct: 293 -------------------------KALKLFSSMHLSGIRPSEFTFVGVINACSDLGAAW 327

Query: 335 HGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISAL 394
            GKQVH +L++  F S   VM++L+DMY+KC  + D R+ FD    + + +LW +MI   
Sbjct: 328 EGKQVHDYLLKLGFESQIYVMTALVDMYAKCSSIVDARKGFDYL-QEPDIVLWTSMIGGY 386

Query: 395 TQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPN 454
            Q+G +E A+ L+  M    + P+++T+A +L AC+    +++G     + T   G    
Sbjct: 387 VQNGENEDALSLYGRMEMEGILPNELTMASVLKACSSLAALEQG-KQIHARTVKYGFGLE 445

Query: 455 QEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNAL 493
               + L  + A+ GC         +MP   D   WNA+
Sbjct: 446 VPIGSALSTMYAKCGCLKDGTLVFRRMP-ARDVISWNAM 483



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 88/351 (25%), Positives = 147/351 (41%), Gaps = 70/351 (19%)

Query: 47  GIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVD 106
           GIR    T   ++  C++  +   GK+VH +L L        ++   L+ MY KC S VD
Sbjct: 305 GIRPSEFTFVGVINACSDLGAAWEGKQVHDYL-LKLGFESQIYVMTALVDMYAKCSSIVD 363

Query: 107 ARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAV 166
           ARK FD +   ++  + +M+ G                               Y ++G  
Sbjct: 364 ARKGFDYLQEPDIVLWTSMIGG-------------------------------YVQNGEN 392

Query: 167 EEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSI 226
           E+ L  Y  +    I  NE + A +L  C  L  L+  +Q+H + +  GF   V I S++
Sbjct: 393 EDALSLYGRMEMEGILPNELTMASVLKACSSLAALEQGKQIHARTVKYGFGLEVPIGSAL 452

Query: 227 VDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWT 286
              YAKCG L D   +F    ARDV++W  M+SG                          
Sbjct: 453 STMYAKCGCLKDGTLVFRRMPARDVISWNAMISG-------------------------- 486

Query: 287 TLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGF--LI 344
                 ++NG G++ALELF  M +   +P+  TF + L AC+ +  ++ G    G+  ++
Sbjct: 487 -----LSQNGCGKEALELFEEMQLEGTKPDYVTFVNILSACSHMGLVERG---WGYFRMM 538

Query: 345 RTNFRSNTIV--MSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISA 393
              F  +  V   + ++D+ S+ G L +  +  +         LW  ++ A
Sbjct: 539 FDEFGMDPRVEHYACMVDILSRAGKLKEAIEFTESATIDHGMCLWRIILGA 589



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 49/180 (27%), Positives = 89/180 (49%), Gaps = 18/180 (10%)

Query: 8   RGINRKNLPNNCLIQSFLS-LISKGQLSEAISSLDLLAQRGIRLPAE-TLAFILQQCAES 65
           +G +    P+  L  S +   +  G+  +A+S    +   GI LP E T+A +L+ C+  
Sbjct: 366 KGFDYLQEPDIVLWTSMIGGYVQNGENEDALSLYGRMEMEGI-LPNELTMASVLKACSSL 424

Query: 66  KSLKLGKRVHLHLKLTQRKTPTTF-----LSNHLISMYFKCGSDVDARKVFDKIPVKNLF 120
            +L+ GK++H       R     F     + + L +MY KCG   D   VF ++P +++ 
Sbjct: 425 AALEQGKQIH------ARTVKYGFGLEVPIGSALSTMYAKCGCLKDGTLVFRRMPARDVI 478

Query: 121 SYNNMLSGYANLGMMKHARNLFDNM----AERDVVSWNTMIIGYAKSGAVEEGLKFYKVL 176
           S+N M+SG +  G  K A  LF+ M     + D V++  ++   +  G VE G  +++++
Sbjct: 479 SWNAMISGLSQNGCGKEALELFEEMQLEGTKPDYVTFVNILSACSHMGLVERGWGYFRMM 538


>gi|125564656|gb|EAZ10036.1| hypothetical protein OsI_32340 [Oryza sativa Indica Group]
          Length = 644

 Score =  318 bits (815), Expect = 6e-84,   Method: Compositional matrix adjust.
 Identities = 175/552 (31%), Positives = 298/552 (53%), Gaps = 37/552 (6%)

Query: 35  EAISSLDLLAQRGIRLPAE-TLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNH 93
           EA+  L  + +RGI LP E TL F+L+ CA  ++ +       H+ +T            
Sbjct: 93  EALPLLRGMIRRGI-LPNEFTLPFLLKACARVQAWE-------HVMVTH----------- 133

Query: 94  LISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSW 153
              +  K G             V  +F  N +L  YA+ G +  +R  FD M +R+VVSW
Sbjct: 134 --GVVVKLGF------------VGQVFVGNALLHSYASAGSLGDSRRFFDEMVDRNVVSW 179

Query: 154 NTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLV 213
           N+MI GYA++G   E    ++ +RR  +  +EF+   +L  C     L+  + VH  +LV
Sbjct: 180 NSMINGYAQAGNTREACSLFEGMRRQGLLADEFTLVSLLFACSAEGNLEFGKLVHSHLLV 239

Query: 214 TGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKL 273
            G   ++++++++VD Y KCG+L  A   FD    ++ ++WT+M+   AK   +++A   
Sbjct: 240 RGCRIDLILANALVDMYGKCGDLLMAHTCFDMMPFKNAVSWTSMLCALAKRASIDAARDW 299

Query: 274 FNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSL 333
           F ++PEK+ +SW  +I+ Y + G   +AL+L+ RM +L + P++ T ++ L AC  +  L
Sbjct: 300 FEQIPEKSIISWNAMISCYVQGGRFHEALDLYNRMKLLGLAPDEFTLAAVLSACGQLGDL 359

Query: 334 KHGKQVHGFLIRTNFRSNTIVM-SSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMIS 392
             GK +H   IR NF +  + + +SL+DMY++CG ++    +F    +K N + WN +I 
Sbjct: 360 ASGKMIHD-CIRDNFHNPGVALFNSLLDMYARCGQVDTAISLFSEMPSK-NVISWNAIIG 417

Query: 393 ALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGII 452
           AL  HG  + A+  F  MV  +  PD+IT   +L+AC H GL++ G  YF++M H   + 
Sbjct: 418 ALAMHGRAQDALMFFRSMVSDAFPPDEITFVALLSACNHGGLLEAGQYYFQAMRHVYNVK 477

Query: 453 PNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQ 512
           P  EH+AC+++LL + G   + ++ ++ MP   D  +W AL G CRIHG+I +G++V+ Q
Sbjct: 478 PGVEHYACMVDLLGRGGQLAKAVDLIKDMPMRPDVVVWGALLGACRIHGHIQIGKQVIKQ 537

Query: 513 LIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSV 572
           L++    S     L+S++     +   ++++R+L+ E   KK   +S IE  + +H    
Sbjct: 538 LLELEGMSGGLFVLISNMLYETHQWEDMKRLRKLMREWGMKKNMGVSSIETNSNIHESGA 597

Query: 573 SDSLHPMRDVLY 584
               H   D +Y
Sbjct: 598 EGIGHESSDDMY 609



 Score =  160 bits (406), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 120/426 (28%), Positives = 192/426 (45%), Gaps = 79/426 (18%)

Query: 112 DKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLK 171
           D +  + L SY  + +G    G + +AR LFD + + D   +N++I  Y  S   +E L 
Sbjct: 41  DDVTSQILASYCALPAG----GGVWYARQLFDRIPDPDRFVYNSLIRAYCNSHCPQEALP 96

Query: 172 FYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYA 231
             + + R  I  NEF+   +L  C +++  +     HG V+  GF+  V + ++++ +YA
Sbjct: 97  LLRGMIRRGILPNEFTLPFLLKACARVQAWEHVMVTHGVVVKLGFVGQVFVGNALLHSYA 156

Query: 232 KCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAG 291
             G L D+RR FDE   R+V++W +M++GYA+ G+   A  LF                G
Sbjct: 157 SAGSLGDSRRFFDEMVDRNVVSWNSMINGYAQAGNTREACSLFE---------------G 201

Query: 292 YTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSN 351
             R GL                  ++ T  S L AC++  +L+ GK VH  L+    R +
Sbjct: 202 MRRQGL----------------LADEFTLVSLLFACSAEGNLEFGKLVHSHLLVRGCRID 245

Query: 352 TIVMSSLIDMYSKCGCLNDGRQVFDLTDNKE----NSML--------------------- 386
            I+ ++L+DMY KCG L      FD+   K      SML                     
Sbjct: 246 LILANALVDMYGKCGDLLMAHTCFDMMPFKNAVSWTSMLCALAKRASIDAARDWFEQIPE 305

Query: 387 -----WNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTY 441
                WN MIS   Q G   +A+ L++ M    + PD+ TLA +L+AC   G +  G   
Sbjct: 306 KSIISWNAMISCYVQGGRFHEALDLYNRMKLLGLAPDEFTLAAVLSACGQLGDLASG--- 362

Query: 442 FESMTHDLGIIPNQEHHA------CLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHG 495
              M HD   I +  H+        L+++ A+ G  D  ++   +MP + +   WNA+ G
Sbjct: 363 --KMIHD--CIRDNFHNPGVALFNSLLDMYARCGQVDTAISLFSEMPSK-NVISWNAIIG 417

Query: 496 VCRIHG 501
              +HG
Sbjct: 418 ALAMHG 423



 Score =  147 bits (371), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 108/429 (25%), Positives = 185/429 (43%), Gaps = 69/429 (16%)

Query: 10  INRKNLPNNCLIQSFLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLK 69
           ++R  +  N +I  +      G   EA S  + + ++G+     TL  +L  C+   +L+
Sbjct: 172 VDRNVVSWNSMINGY---AQAGNTREACSLFEGMRRQGLLADEFTLVSLLFACSAEGNLE 228

Query: 70  LGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGY 129
            GK VH HL L +       L+N L+ MY KCG  + A   FD +P KN  S+ +ML   
Sbjct: 229 FGKLVHSHL-LVRGCRIDLILANALVDMYGKCGDLLMAHTCFDMMPFKNAVSWTSMLCAL 287

Query: 130 ANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFA 189
           A    +  AR+ F+ + E+ ++SWN MI  Y + G   E L  Y  ++   ++ +EF+ A
Sbjct: 288 AKRASIDAARDWFEQIPEKSIISWNAMISCYVQGGRFHEALDLYNRMKLLGLAPDEFTLA 347

Query: 190 GILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDAR 249
            +L+ C +L +L   + +H  +        V + +S++D YA+CG++  A  LF E  ++
Sbjct: 348 AVLSACGQLGDLASGKMIHDCIRDNFHNPGVALFNSLLDMYARCGQVDTAISLFSEMPSK 407

Query: 250 DVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMM 309
           +V++W  ++   A                                +G  Q AL  F  M+
Sbjct: 408 NVISWNAIIGALAM-------------------------------HGRAQDALMFFRSMV 436

Query: 310 ILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLN 369
                P++ TF + L AC       HG    G L    +    +                
Sbjct: 437 SDAFPPDEITFVALLSAC------NHG----GLLEAGQYYFQAM---------------- 470

Query: 370 DGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNAC 429
             R V+++    E+   +  M+  L + G   +A+ L  DM    ++PD +    +L AC
Sbjct: 471 --RHVYNVKPGVEH---YACMVDLLGRGGQLAKAVDLIKDM---PMRPDVVVWGALLGAC 522

Query: 430 THSGLVQEG 438
              G +Q G
Sbjct: 523 RIHGHIQIG 531


>gi|225457861|ref|XP_002279169.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g77010, mitochondrial-like [Vitis vinifera]
          Length = 685

 Score =  318 bits (814), Expect = 6e-84,   Method: Compositional matrix adjust.
 Identities = 164/509 (32%), Positives = 288/509 (56%), Gaps = 2/509 (0%)

Query: 54  TLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDK 113
            LA ++  C    +L  GK++H  + + + +  +  L + L+++Y KCG    A  V + 
Sbjct: 175 VLATVVGACTNLGALDCGKQIHARIVVDEVEFDSV-LGSSLVNLYGKCGDIDSANHVLNL 233

Query: 114 IPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFY 173
           +   + FS + ++SGYA+ G M  AR +F   +   VV WN+MI GY  +    E L+ +
Sbjct: 234 MKEPDAFSLSALISGYASCGRMNDARRIFCLKSNACVVLWNSMISGYVANNEALEALELF 293

Query: 174 KVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKC 233
             +RR  +  +  +FA +L+ C  L  +    QVH  V   GF ++++I S++VD Y+KC
Sbjct: 294 NNMRRKGVQEDYSTFASVLSACSTLGIIDQGIQVHAHVYKVGFTNDIIIDSALVDMYSKC 353

Query: 234 GELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYT 293
               DA +LF +  A D +   +M++ Y+  G ++ A ++F+ MP K+ +SW ++I G++
Sbjct: 354 RRPDDACKLFSDLQAYDTILLNSMITVYSNCGRIDDARQIFDTMPSKSLISWNSMIVGFS 413

Query: 294 RNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTI 353
           +N    +AL+LF  M  L +R ++ + +  + ACASI SL+ G+Q+           + I
Sbjct: 414 QNACPIEALDLFCEMNKLGLRMDKFSLAGVISACASISSLELGEQIFARATIIGLEFDQI 473

Query: 354 VMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRS 413
           + +SL+D Y KCG +  GR++FD    K + + WN+M+     +G+  +A+ +F  M   
Sbjct: 474 ISTSLVDFYCKCGLVEHGRKLFDRM-MKSDEVPWNSMLMGYATNGHGIEALNVFDQMRSV 532

Query: 414 SVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQ 473
            V+P  IT   +L+AC H GLV+EG  +F +M  D  I P  EH++C+++L A+AG  + 
Sbjct: 533 GVQPTDITFVGVLSACDHCGLVEEGRKWFYAMKLDYHINPGIEHYSCMVDLYARAGLLED 592

Query: 474 LMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSA 533
            MN +E+MP + D+ +W+++   C  HGN  +G+KV  ++ID +P++S  +  LS IY+ 
Sbjct: 593 AMNLIEQMPLKADTSMWSSVLRGCVAHGNNILGKKVAKRIIDLDPENSGAYVQLSGIYAT 652

Query: 534 LGKGRLVEKVRQLINERQFKKEQAISWIE 562
                   +VR+L+ +++  K    SW +
Sbjct: 653 FEDWGRSAQVRKLMYDKKIPKVPGCSWAD 681



 Score =  206 bits (523), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 136/480 (28%), Positives = 238/480 (49%), Gaps = 45/480 (9%)

Query: 89  FLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAER 148
           F  N +I  Y K GS   + ++FD +P K+ FS+N ++SG+A  G ++ AR LF+ M  +
Sbjct: 74  FSWNTMIEGYLKSGSKGKSLELFDSMPHKDAFSWNVVISGFAKEGNLEVARRLFNEMPWK 133

Query: 149 DVVSWNTMIIGYAKSGAVEEGLKFYK-----VLRRFSISCNE-FSFAGILTICVKLEELK 202
           + ++WN+MI GYA +G  +E +  +K      L RF   C + F  A ++  C  L  L 
Sbjct: 134 NGIAWNSMIHGYACNGRPKEAVGLFKDLSLNPLERF---CGDTFVLATVVGACTNLGALD 190

Query: 203 LTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYA 262
             +Q+H +++V     + V+ SS+V+ Y KCG++  A  + +     D  + + ++SGYA
Sbjct: 191 CGKQIHARIVVDEVEFDSVLGSSLVNLYGKCGDIDSANHVLNLMKEPDAFSLSALISGYA 250

Query: 263 KLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSS 322
             G M  A ++F        V W ++I+GY  N    +ALELF  M    ++ +  TF+S
Sbjct: 251 SCGRMNDARRIFCLKSNACVVLWNSMISGYVANNEALEALELFNNMRRKGVQEDYSTFAS 310

Query: 323 CLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSK------------------ 364
            L AC+++  +  G QVH  + +  F ++ I+ S+L+DMYSK                  
Sbjct: 311 VLSACSTLGIIDQGIQVHAHVYKVGFTNDIIIDSALVDMYSKCRRPDDACKLFSDLQAYD 370

Query: 365 -------------CGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMV 411
                        CG ++D RQ+FD   +K + + WN+MI   +Q+    +A+ LF +M 
Sbjct: 371 TILLNSMITVYSNCGRIDDARQIFDTMPSK-SLISWNSMIVGFSQNACPIEALDLFCEMN 429

Query: 412 RSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCS 471
           +  ++ DK +LA +++AC     ++ G   F   T  +G+  +Q     L++   + G  
Sbjct: 430 KLGLRMDKFSLAGVISACASISSLELGEQIFARATI-IGLEFDQIISTSLVDFYCKCGLV 488

Query: 472 DQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQL--IDQNPQSSATHGLLSS 529
           +      ++M  + D   WN++      +G+      V DQ+  +   P      G+LS+
Sbjct: 489 EHGRKLFDRM-MKSDEVPWNSMLMGYATNGHGIEALNVFDQMRSVGVQPTDITFVGVLSA 547



 Score =  163 bits (412), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 94/370 (25%), Positives = 182/370 (49%), Gaps = 38/370 (10%)

Query: 34  SEAISSLDL---LAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFL 90
           +EA+ +L+L   + ++G++    T A +L  C+    +  G +VH H+      T    +
Sbjct: 284 NEALEALELFNNMRRKGVQEDYSTFASVLSACSTLGIIDQGIQVHAHVYKVGF-TNDIII 342

Query: 91  SNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDV 150
            + L+ MY KC    DA K+F  +   +    N+M++ Y+N G +  AR +FD M  + +
Sbjct: 343 DSALVDMYSKCRRPDDACKLFSDLQAYDTILLNSMITVYSNCGRIDDARQIFDTMPSKSL 402

Query: 151 VSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQ 210
           +SWN+MI+G++++    E L  +  + +  +  ++FS AG+++ C  +  L+L  Q+  +
Sbjct: 403 ISWNSMIVGFSQNACPIEALDLFCEMNKLGLRMDKFSLAGVISACASISSLELGEQIFAR 462

Query: 211 VLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESA 270
             + G   + +IS+S+VD Y KCG +   R+LFD     D + W +M+ GYA        
Sbjct: 463 ATIIGLEFDQIISTSLVDFYCKCGLVEHGRKLFDRMMKSDEVPWNSMLMGYAT------- 515

Query: 271 SKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASI 330
                                   NG G +AL +F +M  + ++P   TF   L AC   
Sbjct: 516 ------------------------NGHGIEALNVFDQMRSVGVQPTDITFVGVLSACDHC 551

Query: 331 VSLKHGKQVHGFLIRTNFRSNTIV--MSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWN 388
             ++ G++   + ++ ++  N  +   S ++D+Y++ G L D   + +    K ++ +W+
Sbjct: 552 GLVEEGRKWF-YAMKLDYHINPGIEHYSCMVDLYARAGLLEDAMNLIEQMPLKADTSMWS 610

Query: 389 TMISALTQHG 398
           +++     HG
Sbjct: 611 SVLRGCVAHG 620



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 99/393 (25%), Positives = 183/393 (46%), Gaps = 69/393 (17%)

Query: 187 SFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVV-ISSSIVDAYAKCGELSDARRLFDE 245
           S A  L  C     +   R +H   L +G L +V+ I + ++  Y++C  + +A++LF+E
Sbjct: 8   SLARQLGSCNNYGSIYRGRLLHILFLKSGVLHSVLSIGNRLLQMYSRCNSMREAQQLFEE 67

Query: 246 TDARDVLTWTTMV-------------------------------SGYAKLGDMESASKLF 274
              R+  +W TM+                               SG+AK G++E A +LF
Sbjct: 68  MPKRNCFSWNTMIEGYLKSGSKGKSLELFDSMPHKDAFSWNVVISGFAKEGNLEVARRLF 127

Query: 275 NEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMM---ILRIRPNQHTFSSCLCACASIV 331
           NEMP KN ++W ++I GY  NG  ++A+ LF  +    + R   +    ++ + AC ++ 
Sbjct: 128 NEMPWKNGIAWNSMIHGYACNGRPKEAVGLFKDLSLNPLERFCGDTFVLATVVGACTNLG 187

Query: 332 SLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCG------------------------- 366
           +L  GKQ+H  ++      ++++ SSL+++Y KCG                         
Sbjct: 188 ALDCGKQIHARIVVDEVEFDSVLGSSLVNLYGKCGDIDSANHVLNLMKEPDAFSLSALIS 247

Query: 367 ----C--LNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKI 420
               C  +ND R++F L  N    +LWN+MIS    +    +A+ LF++M R  V+ D  
Sbjct: 248 GYASCGRMNDARRIFCLKSNA-CVVLWNSMISGYVANNEALEALELFNNMRRKGVQEDYS 306

Query: 421 TLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEK 480
           T A +L+AC+  G++ +G+    +  + +G   +    + L+++ ++    D        
Sbjct: 307 TFASVLSACSTLGIIDQGIQ-VHAHVYKVGFTNDIIIDSALVDMYSKCRRPDDACKLFSD 365

Query: 481 MPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQL 513
           +   +D+ L N++  V    G ID  R++ D +
Sbjct: 366 LQ-AYDTILLNSMITVYSNCGRIDDARQIFDTM 397



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 52/235 (22%), Positives = 105/235 (44%), Gaps = 13/235 (5%)

Query: 318 HTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTI-VMSSLIDMYSKCGCLNDGRQVFD 376
           H+ +  L +C +  S+  G+ +H   +++    + + + + L+ MYS+C  + + +Q+F+
Sbjct: 7   HSLARQLGSCNNYGSIYRGRLLHILFLKSGVLHSVLSIGNRLLQMYSRCNSMREAQQLFE 66

Query: 377 LTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQ 436
               K N   WNTMI    + G   +++ LF  M       D  +  V+++     G ++
Sbjct: 67  EMP-KRNCFSWNTMIEGYLKSGSKGKSLELFDSMPHK----DAFSWNVVISGFAKEGNLE 121

Query: 437 EGLTYFESMTHDLGIIPNQEHH--ACLIELLAQAGC-SDQLMNQLEKMPYEHDSYLWNAL 493
                F  M    GI  N   H  AC        G   D  +N LE+  +  D+++   +
Sbjct: 122 VARRLFNEMPWKNGIAWNSMIHGYACNGRPKEAVGLFKDLSLNPLER--FCGDTFVLATV 179

Query: 494 HGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLIN 548
            G C   G +D G+++  +++    +  +  G  SS+ +  GK   ++    ++N
Sbjct: 180 VGACTNLGALDCGKQIHARIVVDEVEFDSVLG--SSLVNLYGKCGDIDSANHVLN 232


>gi|326507326|dbj|BAJ95740.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 798

 Score =  318 bits (814), Expect = 7e-84,   Method: Compositional matrix adjust.
 Identities = 166/505 (32%), Positives = 284/505 (56%), Gaps = 10/505 (1%)

Query: 90  LSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERD 149
           + N LI++Y + G    ARKVFD++ VK++ S+  +L  Y+  G +  AR + D M ER+
Sbjct: 286 VQNSLITLYLRMGDAAAARKVFDEMDVKDVVSWTALLDVYSESGDLDGARRVLDAMPERN 345

Query: 150 VVSWNTMIIGYAKSGAVEEGLKFYKVLR----RFSISCNEFSFAGILTICVKLEELKLTR 205
            VSW T+I  + + G   E +K Y  +     R +ISC    F+ +L+ C  LE+L+   
Sbjct: 346 EVSWGTLIARHEQRGNAAEAVKLYSQMLADGCRPNISC----FSSVLSACATLEDLRGGA 401

Query: 206 QVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLG 265
           ++H + L  G  +NV +SSS++D Y KC +  DA+ +FD    ++++ W ++ SGY+  G
Sbjct: 402 RIHARSLKMGSSTNVFVSSSLIDMYCKCKKCRDAQTIFDTLPEKNIVCWNSLASGYSYNG 461

Query: 266 DMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLC 325
            M  A  LF +MP +N  SW T+I+GY +N     AL  F  M+     P + TFSS L 
Sbjct: 462 KMVEAMYLFKKMPARNLASWNTIISGYAQNRQFVDALRSFNAMLASGQVPGEITFSSVLL 521

Query: 326 ACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSM 385
           ACA++ SL  GK  H   I+     +  + ++L DMY+K G L   +++F     + N +
Sbjct: 522 ACANLCSLVTGKMAHAKTIKLGMEESIFIGTALSDMYAKSGDLQSSKRMFYQMPER-NDV 580

Query: 386 LWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESM 445
            W  MI  L ++G+ E++I L  DM+ + + P++ T   +L AC+H GLV++ + YFE M
Sbjct: 581 TWTAMIQGLAENGFAEESILLLEDMMATGMTPNEHTFLALLFACSHGGLVEQAIHYFEKM 640

Query: 446 THDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDM 505
               GI P ++H+ C++++LA+AG   +    L K P + ++  W AL   C  + N ++
Sbjct: 641 -QAWGISPKEKHYTCMVDVLARAGRLIEAEALLMKTPSKSEANSWAALLSACNTYKNEEI 699

Query: 506 GRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIEN 565
           G +   +L +    ++A + LLS++Y++ G+ +   ++R L+     KK+   SW+++  
Sbjct: 700 GERAAKRLHELGKDNTAGYVLLSNMYASCGRWKDAARIRVLMKGTTLKKDGGCSWVQVRG 759

Query: 566 KVHAFSVSDSLHPMRDVLYSVLEQL 590
           + HAF   ++ HP+   +  +L+ L
Sbjct: 760 QYHAFFSWEAKHPLSMEINEILDLL 784



 Score =  192 bits (489), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 135/493 (27%), Positives = 229/493 (46%), Gaps = 72/493 (14%)

Query: 68  LKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFD---KIPVKNLFSYNN 124
           L L   +H H   +     T+ +++HL++ Y       +  + F         + F+Y+ 
Sbjct: 98  LPLALSLHAHAVRSGVAADTS-VASHLLTTYAAFARAAECDRAFGDCVAAGAASPFTYDF 156

Query: 125 MLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYK---------- 174
           M+  +   G +  AR LFD M ER+VVS+ TM+    K G V E ++ Y+          
Sbjct: 157 MVHEHVKAGDIASARGLFDGMPERNVVSYTTMVDALMKRGRVAEAVELYEQCPSGSVAFF 216

Query: 175 ------------------VLRRFSISC----NEFSFAGILTICVKLEELKLTRQVHGQVL 212
                             V R+  +SC    N  +F  ++  CV   E  L   + G  +
Sbjct: 217 TATISGFVRNELHHNALGVFRKM-VSCGVRPNGITFVCMIKACVGAGEFGLAMSIVGSAI 275

Query: 213 VTGFL-SNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESAS 271
            + F  S++ + +S++  Y + G+ + AR++FDE D +DV++WT ++  Y++ GD++ A 
Sbjct: 276 KSNFFESSIEVQNSLITLYLRMGDAAAARKVFDEMDVKDVVSWTALLDVYSESGDLDGAR 335

Query: 272 KLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIV 331
           ++ + MPE+N VSW TLIA + + G   +A++L+++M+    RPN   FSS L ACA++ 
Sbjct: 336 RVLDAMPERNEVSWGTLIARHEQRGNAAEAVKLYSQMLADGCRPNISCFSSVLSACATLE 395

Query: 332 SLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNK---------- 381
            L+ G ++H   ++    +N  V SSLIDMY KC    D + +FD    K          
Sbjct: 396 DLRGGARIHARSLKMGSSTNVFVSSSLIDMYCKCKKCRDAQTIFDTLPEKNIVCWNSLAS 455

Query: 382 --------------------ENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKIT 421
                                N   WNT+IS   Q+     A+R F+ M+ S   P +IT
Sbjct: 456 GYSYNGKMVEAMYLFKKMPARNLASWNTIISGYAQNRQFVDALRSFNAMLASGQVPGEIT 515

Query: 422 LAVILNACTH-SGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEK 480
            + +L AC +   LV   + +  + T  LG+  +      L ++ A++G          +
Sbjct: 516 FSSVLLACANLCSLVTGKMAH--AKTIKLGMEESIFIGTALSDMYAKSGDLQSSKRMFYQ 573

Query: 481 MPYEHDSYLWNAL 493
           MP E +   W A+
Sbjct: 574 MP-ERNDVTWTAM 585



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 100/390 (25%), Positives = 178/390 (45%), Gaps = 47/390 (12%)

Query: 30  KGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTF 89
           +G  +EA+     +   G R      + +L  CA  + L+ G R+H    L    +   F
Sbjct: 359 RGNAAEAVKLYSQMLADGCRPNISCFSSVLSACATLEDLRGGARIHAR-SLKMGSSTNVF 417

Query: 90  LSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERD 149
           +S+ LI MY KC    DA+ +FD +P KN+  +N++ SGY+  G M  A  LF  M  R+
Sbjct: 418 VSSSLIDMYCKCKKCRDAQTIFDTLPEKNIVCWNSLASGYSYNGKMVEAMYLFKKMPARN 477

Query: 150 VVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHG 209
           + SWNT+I GYA++    + L+ +  +        E +F+ +L  C  L  L   +  H 
Sbjct: 478 LASWNTIISGYAQNRQFVDALRSFNAMLASGQVPGEITFSSVLLACANLCSLVTGKMAHA 537

Query: 210 QVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMES 269
           + +  G   ++ I +++ D YAK G+L  ++R+F +   R+ +TWT M+ G A+      
Sbjct: 538 KTIKLGMEESIFIGTALSDMYAKSGDLQSSKRMFYQMPERNDVTWTAMIQGLAE------ 591

Query: 270 ASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACAS 329
                                    NG  ++++ L   MM   + PN+HTF + L AC+ 
Sbjct: 592 -------------------------NGFAEESILLLEDMMATGMTPNEHTFLALLFACS- 625

Query: 330 IVSLKHG----KQVHGF--LIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKEN 383
                HG    + +H F  +            + ++D+ ++ G L +   +   T +K  
Sbjct: 626 -----HGGLVEQAIHYFEKMQAWGISPKEKHYTCMVDVLARAGRLIEAEALLMKTPSKSE 680

Query: 384 SMLWNTMISALTQHGYD---EQAIRLFHDM 410
           +  W  ++SA   +  +   E+A +  H++
Sbjct: 681 ANSWAALLSACNTYKNEEIGERAAKRLHEL 710



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 75/297 (25%), Positives = 124/297 (41%), Gaps = 65/297 (21%)

Query: 199 EELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDE---TDARDVLTWT 255
           E L L   +H   + +G  ++  ++S ++  YA     ++  R F +     A    T+ 
Sbjct: 96  ERLPLALSLHAHAVRSGVAADTSVASHLLTTYAAFARAAECDRAFGDCVAAGAASPFTYD 155

Query: 256 TMVSGYAKLGDMESASKLFNEMPEKNPVSWTTL--------------------------- 288
            MV  + K GD+ SA  LF+ MPE+N VS+TT+                           
Sbjct: 156 FMVHEHVKAGDIASARGLFDGMPERNVVSYTTMVDALMKRGRVAEAVELYEQCPSGSVAF 215

Query: 289 ----IAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLI 344
               I+G+ RN L   AL +F +M+   +RPN  TF   + AC           + G  I
Sbjct: 216 FTATISGFVRNELHHNALGVFRKMVSCGVRPNGITFVCMIKACVGAGEFGLAMSIVGSAI 275

Query: 345 RTNFRSNTI-VMSSLIDMYSKCGCLNDGRQVFDLTDNKE--------------------- 382
           ++NF  ++I V +SLI +Y + G     R+VFD  D K+                     
Sbjct: 276 KSNFFESSIEVQNSLITLYLRMGDAAAARKVFDEMDVKDVVSWTALLDVYSESGDLDGAR 335

Query: 383 ---------NSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACT 430
                    N + W T+I+   Q G   +A++L+  M+    +P+    + +L+AC 
Sbjct: 336 RVLDAMPERNEVSWGTLIARHEQRGNAAEAVKLYSQMLADGCRPNISCFSSVLSACA 392


>gi|224138230|ref|XP_002322762.1| predicted protein [Populus trichocarpa]
 gi|222867392|gb|EEF04523.1| predicted protein [Populus trichocarpa]
          Length = 617

 Score =  318 bits (814), Expect = 8e-84,   Method: Compositional matrix adjust.
 Identities = 155/490 (31%), Positives = 279/490 (56%), Gaps = 7/490 (1%)

Query: 105 VDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSG 164
           + A  +FD      +F+ + ++S   N  ++ +A  +F  +   ++  +N+ I G++ S 
Sbjct: 39  IRAHTIFD------VFAASCLISISINKNLLDYAAQVFYQIQNPNLFIYNSFIRGFSGSK 92

Query: 165 AVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISS 224
             ++   FY   +R  +  +  ++  ++  C +   L +  Q HGQ++  GF S+V + +
Sbjct: 93  DPDKSFHFYVQSKRNGLVPDNLTYPFLVKACTQKGSLDMGIQAHGQIIRHGFDSDVYVQN 152

Query: 225 SIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVS 284
           S+V  Y+  G++  A  +F      DV++WT+MV+GY K GD+ SA KLF++MPEKN V+
Sbjct: 153 SLVTMYSTLGDIKSASYVFRRISCLDVVSWTSMVAGYIKSGDVTSARKLFDKMPEKNLVT 212

Query: 285 WTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLI 344
           W+ +I+GY +N    KA+EL+  +    +  N+    S + +CA + +L+ G++ H +++
Sbjct: 213 WSVMISGYAKNSFFDKAIELYFLLQSEGVHANETVMVSVIASCAHLGALELGERAHDYIL 272

Query: 345 RTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAI 404
           R     N I+ ++L+DMY++CG ++    VFD    ++ ++ W T+I+    HGY E+A+
Sbjct: 273 RNKMTVNLILGTALVDMYARCGSIDKAIWVFDQLPGRD-ALSWTTLIAGFAMHGYAEKAL 331

Query: 405 RLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIEL 464
             F  M ++ + P +IT   +L+AC+H GLV+ GL  FESM  D  I P  EH+ C+++L
Sbjct: 332 EYFSRMEKAGLTPREITFTAVLSACSHGGLVERGLELFESMKRDYRIEPRLEHYGCMVDL 391

Query: 465 LAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATH 524
           L +AG   +    + +MP + ++ +W AL G CRIH N ++  +    LI+  P+ S  +
Sbjct: 392 LGRAGKLAEAEKFVNEMPMKPNAPIWGALLGACRIHKNSEIAERAGKTLIELKPEHSGYY 451

Query: 525 GLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLY 584
            LLS+IY+   K   VE +RQ++ ER   K    +  E++ KVH F++ D  HP    + 
Sbjct: 452 VLLSNIYARTNKWENVENIRQMMKERGVVKPPGYTLFEMDGKVHKFTIGDKTHPEIQQIE 511

Query: 585 SVLEQLAGQM 594
            + E++ G++
Sbjct: 512 RMWEEILGKI 521



 Score =  159 bits (402), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 103/415 (24%), Positives = 197/415 (47%), Gaps = 38/415 (9%)

Query: 16  PNNCLIQSFLSLISKGQLSEAISSLDLLAQRGIRLPAE-TLAFILQQCAESKSLKLGKRV 74
           PN  +  SF+   S  +  +      + ++R   +P   T  F+++ C +  SL +G + 
Sbjct: 76  PNLFIYNSFIRGFSGSKDPDKSFHFYVQSKRNGLVPDNLTYPFLVKACTQKGSLDMGIQA 135

Query: 75  HLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGM 134
           H  + +        ++ N L++MY   G    A  VF +I   ++ S+ +M++GY   G 
Sbjct: 136 HGQI-IRHGFDSDVYVQNSLVTMYSTLGDIKSASYVFRRISCLDVVSWTSMVAGYIKSGD 194

Query: 135 MKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTI 194
           +  AR LFD M E+++V+W+ MI GYAK+   ++ ++ Y +L+   +  NE     ++  
Sbjct: 195 VTSARKLFDKMPEKNLVTWSVMISGYAKNSFFDKAIELYFLLQSEGVHANETVMVSVIAS 254

Query: 195 CVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTW 254
           C  L  L+L  + H  +L      N+++ +++VD YA+CG +  A  +FD+   RD L+W
Sbjct: 255 CAHLGALELGERAHDYILRNKMTVNLILGTALVDMYARCGSIDKAIWVFDQLPGRDALSW 314

Query: 255 TTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIR 314
           TT+++G+A                                +G  +KALE F+RM    + 
Sbjct: 315 TTLIAGFA-------------------------------MHGYAEKALEYFSRMEKAGLT 343

Query: 315 PNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIV--MSSLIDMYSKCGCLNDGR 372
           P + TF++ L AC+    ++ G ++   + R ++R    +     ++D+  + G L +  
Sbjct: 344 PREITFTAVLSACSHGGLVERGLELFESMKR-DYRIEPRLEHYGCMVDLLGRAGKLAEAE 402

Query: 373 QVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILN 427
           +  +    K N+ +W  ++ A   H   E A R    ++   +KP+     V+L+
Sbjct: 403 KFVNEMPMKPNAPIWGALLGACRIHKNSEIAERAGKTLI--ELKPEHSGYYVLLS 455



 Score = 43.5 bits (101), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 28/111 (25%), Positives = 49/111 (44%), Gaps = 1/111 (0%)

Query: 329 SIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWN 388
           S  +L H K +H  LIR +   +    S LI +      L+   QVF    N  N  ++N
Sbjct: 24  SCTTLSHLKIIHAHLIRAHTIFDVFAASCLISISINKNLLDYAAQVFYQIQNP-NLFIYN 82

Query: 389 TMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGL 439
           + I   +     +++   +    R+ + PD +T   ++ ACT  G +  G+
Sbjct: 83  SFIRGFSGSKDPDKSFHFYVQSKRNGLVPDNLTYPFLVKACTQKGSLDMGI 133


>gi|255584337|ref|XP_002532904.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223527338|gb|EEF29484.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 604

 Score =  318 bits (814), Expect = 8e-84,   Method: Compositional matrix adjust.
 Identities = 168/490 (34%), Positives = 270/490 (55%), Gaps = 44/490 (8%)

Query: 118 NLFSYNNMLSGYANLGMM--KHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFY-K 174
           +LF  N+++  Y+  G++   +A  LF  M E+D+VSWN+MI G  K+G +    K + +
Sbjct: 155 DLFVPNSLIDSYSKCGLLGVNYAMKLFMEMGEKDLVSWNSMIGGLVKAGDLGRARKLFDE 214

Query: 175 VLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCG 234
           +  R ++S N                                        +I+D Y K G
Sbjct: 215 MAERDAVSWN----------------------------------------TILDGYVKAG 234

Query: 235 ELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTR 294
           E+S A  LF++   R+V++W+TMVSGY K GDME A  LF++MP KN V+WT +I+G+  
Sbjct: 235 EMSQAFNLFEKMPERNVVSWSTMVSGYCKTGDMEMARMLFDKMPFKNLVTWTIIISGFAE 294

Query: 295 NGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIV 354
            GL ++A  L+ +M    ++P+  T  S L ACA    L  GK+VH  + +   + +  V
Sbjct: 295 KGLAKEATTLYNQMEAAGLKPDDGTLISILAACAESGLLVLGKKVHASIKKIRIKCSVNV 354

Query: 355 MSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSS 414
            ++L+DMY+KCG ++    +F+    ++  + WN M+  L  HG+ E+AI+LF  M +  
Sbjct: 355 SNALVDMYAKCGRVDKALSIFNEMSMRD-LVSWNCMLQGLAMHGHGEKAIQLFSKMQQEG 413

Query: 415 VKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQL 474
            KPDK+TL  IL ACTH+G V +GL+YF SM  D GI+P+ EH+ C+I+LL + G  ++ 
Sbjct: 414 FKPDKVTLIAILCACTHAGFVDQGLSYFNSMERDHGIVPHIEHYGCMIDLLGRGGRLEEA 473

Query: 475 MNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSAL 534
              ++ MP E +  +W  L G CR+H  + +  KV+D+LI         + +LS+I++A 
Sbjct: 474 FRLVQSMPMEPNDVIWGTLLGACRVHNAVPLAEKVLDRLITLEQSDPGNYSMLSNIFAAA 533

Query: 535 GKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQM 594
           G    V  +R  +     +K    S IE++++VH F+V D  HP  D +Y +L +L   +
Sbjct: 534 GDWNSVANMRLQMKSTGVQKPSGASSIELDDEVHEFTVFDKSHPETDKIYQILVKLGQDL 593

Query: 595 GEDAPSLDAD 604
            + A + +AD
Sbjct: 594 KQVAYAPEAD 603



 Score = 76.3 bits (186), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 55/170 (32%), Positives = 85/170 (50%), Gaps = 7/170 (4%)

Query: 13  KNLPNNCLIQSFLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGK 72
           KNL    +I S      KG   EA +  + +   G++    TL  IL  CAES  L LGK
Sbjct: 280 KNLVTWTIIIS--GFAEKGLAKEATTLYNQMEAAGLKPDDGTLISILAACAESGLLVLGK 337

Query: 73  RVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANL 132
           +VH  +K  + K     +SN L+ MY KCG    A  +F+++ +++L S+N ML G A  
Sbjct: 338 KVHASIKKIRIKCSVN-VSNALVDMYAKCGRVDKALSIFNEMSMRDLVSWNCMLQGLAMH 396

Query: 133 GMMKHARNLFDNMAER----DVVSWNTMIIGYAKSGAVEEGLKFYKVLRR 178
           G  + A  LF  M +     D V+   ++     +G V++GL ++  + R
Sbjct: 397 GHGEKAIQLFSKMQQEGFKPDKVTLIAILCACTHAGFVDQGLSYFNSMER 446



 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 55/220 (25%), Positives = 99/220 (45%), Gaps = 11/220 (5%)

Query: 232 KCGELSDARRLFDETDAR----DVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTT 287
           KC + +  + +  +   R    D+     ++S ++    M  A  +FN++ + N   + T
Sbjct: 32  KCTDFNHIKEVHAQIIKRNLHNDLYVAPKLISAFSLCHQMNLAVNVFNQIQDPNVHLYNT 91

Query: 288 LIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTN 347
           LI  + +N    KA   F  M    +  +  T+   L AC     L   + +H  + +  
Sbjct: 92  LIRAHVQNSQSLKAFATFFDMQKNGLFADNFTYPFLLKACNGKGWLPTVQMIHCHVEKYG 151

Query: 348 FRSNTIVMSSLIDMYSKCGCL--NDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIR 405
           F  +  V +SLID YSKCG L  N   ++F +   +++ + WN+MI  L + G   +A +
Sbjct: 152 FFGDLFVPNSLIDSYSKCGLLGVNYAMKLF-MEMGEKDLVSWNSMIGGLVKAGDLGRARK 210

Query: 406 LFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESM 445
           LF +M       D ++   IL+    +G + +    FE M
Sbjct: 211 LFDEMAER----DAVSWNTILDGYVKAGEMSQAFNLFEKM 246



 Score = 56.2 bits (134), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 51/202 (25%), Positives = 87/202 (43%), Gaps = 23/202 (11%)

Query: 333 LKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMIS 392
             H K+VH  +I+ N  ++  V   LI  +S C  +N    VF+   +  N  L+NT+I 
Sbjct: 36  FNHIKEVHAQIIKRNLHNDLYVAPKLISAFSLCHQMNLAVNVFNQIQDP-NVHLYNTLIR 94

Query: 393 ALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQ---------EGLTYFE 443
           A  Q+    +A   F DM ++ +  D  T   +L AC   G +          E   +F 
Sbjct: 95  AHVQNSQSLKAFATFFDMQKNGLFADNFTYPFLLKACNGKGWLPTVQMIHCHVEKYGFFG 154

Query: 444 SMTHDLGIIPNQEHHACLIELLAQAGC--SDQLMNQLEKMPYEHDSYLWNALHGVCRIHG 501
            +      +PN      LI+  ++ G    +  M    +M  E D   WN++ G     G
Sbjct: 155 DL-----FVPNS-----LIDSYSKCGLLGVNYAMKLFMEMG-EKDLVSWNSMIGGLVKAG 203

Query: 502 NIDMGRKVVDQLIDQNPQSSAT 523
           ++   RK+ D++ +++  S  T
Sbjct: 204 DLGRARKLFDEMAERDAVSWNT 225


>gi|108707831|gb|ABF95626.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
 gi|125586055|gb|EAZ26719.1| hypothetical protein OsJ_10627 [Oryza sativa Japonica Group]
          Length = 798

 Score =  317 bits (813), Expect = 8e-84,   Method: Compositional matrix adjust.
 Identities = 172/551 (31%), Positives = 282/551 (51%), Gaps = 74/551 (13%)

Query: 86  PTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNM 145
           P+      L+  Y + G   DA ++F ++P +N  SY  +L G  + G +  AR LFD M
Sbjct: 110 PSVVSFTSLLRGYVRHGLLADAIRLFQQMPERNHVSYTVLLGGLLDAGRVNEARRLFDEM 169

Query: 146 AERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTR 205
            +RDVV+W  M+ GY ++G + E    +  + +                           
Sbjct: 170 PDRDVVAWTAMLSGYCQAGRITEARALFDEMPK--------------------------- 202

Query: 206 QVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLG 265
                        NVV  ++++  YA+ GE++ AR+LF+    R+ ++WT M+ GY + G
Sbjct: 203 ------------RNVVSWTAMISGYAQNGEVNLARKLFEVMPERNEVSWTAMLVGYIQAG 250

Query: 266 DMESASKLFNEMPEKNPV--------------------------------SWTTLIAGYT 293
            +E A++LFN MPE +PV                                +W+ +I  Y 
Sbjct: 251 HVEDAAELFNAMPE-HPVAACNAMMVGFGQRGMVDAAKTVFEKMCERDDGTWSAMIKAYE 309

Query: 294 RNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTI 353
           +N    +AL  F  M+   +RPN  +  S L  CA++  L +G++VH  ++R +F  +  
Sbjct: 310 QNEFLMEALSTFREMLWRGVRPNYPSVISILTVCAALAVLDYGREVHAAMLRCSFDMDVF 369

Query: 354 VMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRS 413
            +S+LI MY KCG L+  ++VF   + K+  M WN+MI+   QHG  EQA+ +FHDM  +
Sbjct: 370 AVSALITMYIKCGNLDKAKRVFHTFEPKDIVM-WNSMITGYAQHGLGEQALGIFHDMRLA 428

Query: 414 SVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQ 473
            + PD IT    L AC+++G V+EG   F SMT +  I P  EH++C+++LL ++G  ++
Sbjct: 429 GMSPDGITYIGALTACSYTGKVKEGREIFNSMTVNSSIRPGAEHYSCMVDLLGRSGLVEE 488

Query: 474 LMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSA 533
             + ++ MP E D+ +W AL G CR+H N ++      +L++  P ++  + LLS IY++
Sbjct: 489 AFDLIKNMPVEPDAVIWGALMGACRMHRNAEIAEFAAKKLLELEPGNAGPYVLLSHIYTS 548

Query: 534 LGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSL-HPMRDVLYSVLEQLAG 592
           +G+     K+R+ I+ R   K    SWIE + +VH F+  D L HP    +  +LE+L G
Sbjct: 549 VGRWEDASKMRKFISSRNLNKSPGCSWIEYDKRVHLFTSGDVLAHPEHAAILRILEKLDG 608

Query: 593 QMGEDAPSLDA 603
            + E   S D 
Sbjct: 609 LLMESGYSADG 619



 Score =  107 bits (266), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 84/354 (23%), Positives = 146/354 (41%), Gaps = 81/354 (22%)

Query: 92  NHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVV 151
           N  I+   + G+   AR  F+ +P++   SYN +L+GY    +   A  LF  M  RD+ 
Sbjct: 21  NARIAHLARAGNIEGARAAFEAMPLRTTASYNALLAGYFRNRLPDAALGLFRRMPSRDLA 80

Query: 152 SWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQV 211
           S+N +I G +              LRR ++     + A I                    
Sbjct: 81  SYNALISGLS--------------LRRQTLPDAAAALASI-------------------- 106

Query: 212 LVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESAS 271
               F  +VV  +S++  Y + G L+DA RLF +   R+ +++T ++ G    G +  A 
Sbjct: 107 ---PFPPSVVSFTSLLRGYVRHGLLADAIRLFQQMPERNHVSYTVLLGGLLDAGRVNEAR 163

Query: 272 KLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIV 331
           +LF+EMP+++ V+WT +++GY + G   +A  LF  M                       
Sbjct: 164 RLFDEMPDRDVVAWTAMLSGYCQAGRITEARALFDEMP---------------------- 201

Query: 332 SLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMI 391
                            + N +  +++I  Y++ G +N  R++F++   + N + W  M+
Sbjct: 202 -----------------KRNVVSWTAMISGYAQNGEVNLARKLFEVMPER-NEVSWTAML 243

Query: 392 SALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESM 445
               Q G+ E A  LF+ M    V         ++      G+V    T FE M
Sbjct: 244 VGYIQAGHVEDAAELFNAMPEHPVA----ACNAMMVGFGQRGMVDAAKTVFEKM 293



 Score = 72.8 bits (177), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 73/289 (25%), Positives = 120/289 (41%), Gaps = 44/289 (15%)

Query: 258 VSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRM--------- 308
           ++  A+ G++E A   F  MP +   S+  L+AGY RN L   AL LF RM         
Sbjct: 24  IAHLARAGNIEGARAAFEAMPLRTTASYNALLAGYFRNRLPDAALGLFRRMPSRDLASYN 83

Query: 309 -MILRIRPNQHTFSSCLCACASI---------VSLKHGKQVHGFL---IR-------TNF 348
            +I  +   + T      A ASI          SL  G   HG L   IR        N 
Sbjct: 84  ALISGLSLRRQTLPDAAAALASIPFPPSVVSFTSLLRGYVRHGLLADAIRLFQQMPERNH 143

Query: 349 RSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFH 408
            S T+++  L+D     G +N+ R++FD   ++ + + W  M+S   Q G   +A  LF 
Sbjct: 144 VSYTVLLGGLLD----AGRVNEARRLFDEMPDR-DVVAWTAMLSGYCQAGRITEARALFD 198

Query: 409 DMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQA 468
           +M + +V    ++   +++    +G V      FE M        N+     ++    QA
Sbjct: 199 EMPKRNV----VSWTAMISGYAQNGEVNLARKLFEVMPER-----NEVSWTAMLVGYIQA 249

Query: 469 GCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQN 517
           G  +        MP EH     NA+       G +D  + V +++ +++
Sbjct: 250 GHVEDAAELFNAMP-EHPVAACNAMMVGFGQRGMVDAAKTVFEKMCERD 297



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 42/145 (28%), Positives = 74/145 (51%), Gaps = 5/145 (3%)

Query: 33  LSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSN 92
           L EA+S+   +  RG+R    ++  IL  CA    L  G+ VH  + L        F  +
Sbjct: 314 LMEALSTFREMLWRGVRPNYPSVISILTVCAALAVLDYGREVHAAM-LRCSFDMDVFAVS 372

Query: 93  HLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNM----AER 148
            LI+MY KCG+   A++VF     K++  +N+M++GYA  G+ + A  +F +M       
Sbjct: 373 ALITMYIKCGNLDKAKRVFHTFEPKDIVMWNSMITGYAQHGLGEQALGIFHDMRLAGMSP 432

Query: 149 DVVSWNTMIIGYAKSGAVEEGLKFY 173
           D +++   +   + +G V+EG + +
Sbjct: 433 DGITYIGALTACSYTGKVKEGREIF 457


>gi|359481040|ref|XP_002266469.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Vitis vinifera]
          Length = 709

 Score =  317 bits (813), Expect = 8e-84,   Method: Compositional matrix adjust.
 Identities = 182/551 (33%), Positives = 294/551 (53%), Gaps = 47/551 (8%)

Query: 58  ILQQCAESKSLKLGKRVH---LHLKLTQRKTPTTFLSNHLISMYFKCGS--DVDA-RKVF 111
           +L+ C   K L+ G+ VH   + L +        +  N L++MY K  S  +V+  +KVF
Sbjct: 112 VLKSCTLMKDLRFGESVHGCIIRLGMGF----DLYTCNALMNMYSKFWSLEEVNTYKKVF 167

Query: 112 DKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLK 171
           D+    +++S     S Y  LG +   R +F+ M +RD+VSWNT+I G A++G  E+ L 
Sbjct: 168 DEGKTSDVYSKKEKESYY--LGSL---RKVFEMMPKRDIVSWNTVISGNAQNGMHEDALM 222

Query: 172 FYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYA 231
             + +    +  + F+ + +L I  +   L   +++HG  +  G+ ++V I SS++D YA
Sbjct: 223 MVREMGNADLRPDSFTLSSVLPIFAEYVNLLKGKEIHGYAIRNGYDADVFIGSSLIDMYA 282

Query: 232 KCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAG 291
                                          K   ++ + ++F  +P+ + +SW ++IAG
Sbjct: 283 -------------------------------KCTRVDDSCRVFYMLPQHDGISWNSIIAG 311

Query: 292 YTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSN 351
             +NG+  + L+ F +M+I +I+PN  +FSS + ACA + +L  GKQ+HG++IR+ F  N
Sbjct: 312 CVQNGMFDEGLKFFQQMLIAKIKPNHVSFSSIMPACAHLTTLHLGKQLHGYIIRSRFDGN 371

Query: 352 TIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMV 411
             + S+L+DMY+KCG +   R +FD  +   + + W  MI     HG+   AI LF  M 
Sbjct: 372 VFIASALVDMYAKCGNIRTARWIFDKME-LYDMVSWTAMIMGYALHGHAYDAISLFKRME 430

Query: 412 RSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCS 471
              VKP+ +    +L AC+H+GLV E   YF SMT D  IIP  EH+A + +LL + G  
Sbjct: 431 VEGVKPNYVAFMAVLTACSHAGLVDEAWKYFNSMTQDYRIIPGLEHYAAVADLLGRVGRL 490

Query: 472 DQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIY 531
           ++    +  M  E    +W+ L   CR+H NI++  KV  +L   +PQ+   + LLS+IY
Sbjct: 491 EEAYEFISDMHIEPTGSVWSTLLAACRVHKNIELAEKVSKKLFTVDPQNIGAYVLLSNIY 550

Query: 532 SALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLA 591
           SA G+ +   K+R  + ++  KK+ A SWIEI+NKVHAF   D  HP  D +   L+ L 
Sbjct: 551 SAAGRWKDARKLRIAMRDKGMKKKPACSWIEIKNKVHAFVAGDKSHPYYDRINEALKVLL 610

Query: 592 GQMGEDAPSLD 602
            QM  +   LD
Sbjct: 611 EQMEREGYVLD 621



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 89/322 (27%), Positives = 173/322 (53%), Gaps = 12/322 (3%)

Query: 114 IPVKNLFSYNNMLSGYANLGMMKHARNLFDNM-AERDVVSWNTMIIGYAKSGAVEEGLKF 172
           +P  +L S   +LS Y+NL ++  +  +F+++ +    ++W ++I  Y   G     L F
Sbjct: 36  LPSPSLLS--TILSIYSNLNLLHDSLLIFNSLPSPPTTLAWKSIIRCYTSHGLFLHSLSF 93

Query: 173 YKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAK 232
           +  +       +   F  +L  C  +++L+    VHG ++  G   ++   +++++ Y+K
Sbjct: 94  FIQMLASGKYPDHNVFPSVLKSCTLMKDLRFGESVHGCIIRLGMGFDLYTCNALMNMYSK 153

Query: 233 CGELSDA---RRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLI 289
              L +    +++FDE    DV +     S Y     + S  K+F  MP+++ VSW T+I
Sbjct: 154 FWSLEEVNTYKKVFDEGKTSDVYSKKEKESYY-----LGSLRKVFEMMPKRDIVSWNTVI 208

Query: 290 AGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFR 349
           +G  +NG+ + AL +   M    +RP+  T SS L   A  V+L  GK++HG+ IR  + 
Sbjct: 209 SGNAQNGMHEDALMMVREMGNADLRPDSFTLSSVLPIFAEYVNLLKGKEIHGYAIRNGYD 268

Query: 350 SNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHD 409
           ++  + SSLIDMY+KC  ++D  +VF +   + + + WN++I+   Q+G  ++ ++ F  
Sbjct: 269 ADVFIGSSLIDMYAKCTRVDDSCRVFYMLP-QHDGISWNSIIAGCVQNGMFDEGLKFFQQ 327

Query: 410 MVRSSVKPDKITLAVILNACTH 431
           M+ + +KP+ ++ + I+ AC H
Sbjct: 328 MLIAKIKPNHVSFSSIMPACAH 349



 Score = 89.0 bits (219), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 75/294 (25%), Positives = 128/294 (43%), Gaps = 41/294 (13%)

Query: 255 TTMVSGYAKLGDMESASKLFNEMPEK-NPVSWTTLIAGYTRNGLGQKALELFTRMMILRI 313
           +T++S Y+ L  +  +  +FN +P     ++W ++I  YT +GL   +L  F +M+    
Sbjct: 43  STILSIYSNLNLLHDSLLIFNSLPSPPTTLAWKSIIRCYTSHGLFLHSLSFFIQMLASGK 102

Query: 314 RPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCL---ND 370
            P+ + F S L +C  +  L+ G+ VHG +IR     +    ++L++MYSK   L   N 
Sbjct: 103 YPDHNVFPSVLKSCTLMKDLRFGESVHGCIIRLGMGFDLYTCNALMNMYSKFWSLEEVNT 162

Query: 371 GRQVFD--------LTDNKENSML-----------------WNTMISALTQHGYDEQAIR 405
            ++VFD            KE+  L                 WNT+IS   Q+G  E A+ 
Sbjct: 163 YKKVFDEGKTSDVYSKKEKESYYLGSLRKVFEMMPKRDIVSWNTVISGNAQNGMHEDALM 222

Query: 406 LFHDMVRSSVKPDKITLAVILNACTH-----SGLVQEGLTYFESMTHDLGIIPNQEHHAC 460
           +  +M  + ++PD  TL+ +L           G    G         D+ I       + 
Sbjct: 223 MVREMGNADLRPDSFTLSSVLPIFAEYVNLLKGKEIHGYAIRNGYDADVFI------GSS 276

Query: 461 LIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLI 514
           LI++ A+    D        +P +HD   WN++   C  +G  D G K   Q++
Sbjct: 277 LIDMYAKCTRVDDSCRVFYMLP-QHDGISWNSIIAGCVQNGMFDEGLKFFQQML 329



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 57/260 (21%), Positives = 123/260 (47%), Gaps = 10/260 (3%)

Query: 28  ISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPT 87
           +  G   E +     +    I+    + + I+  CA   +L LGK++H ++ +  R    
Sbjct: 313 VQNGMFDEGLKFFQQMLIAKIKPNHVSFSSIMPACAHLTTLHLGKQLHGYI-IRSRFDGN 371

Query: 88  TFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAE 147
            F+++ L+ MY KCG+   AR +FDK+ + ++ S+  M+ GYA  G    A +LF  M  
Sbjct: 372 VFIASALVDMYAKCGNIRTARWIFDKMELYDMVSWTAMIMGYALHGHAYDAISLFKRMEV 431

Query: 148 RDV----VSWNTMIIGYAKSGAVEEGLKFYKVLRR-FSISCNEFSFAGILTICVKLEELK 202
             V    V++  ++   + +G V+E  K++  + + + I      +A +  +  ++  L+
Sbjct: 432 EGVKPNYVAFMAVLTACSHAGLVDEAWKYFNSMTQDYRIIPGLEHYAAVADLLGRVGRLE 491

Query: 203 LTRQVHGQVLV--TGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSG 260
              +    + +  TG + + ++++  V    +  E   +++LF   D +++  +  + + 
Sbjct: 492 EAYEFISDMHIEPTGSVWSTLLAACRVHKNIELAE-KVSKKLF-TVDPQNIGAYVLLSNI 549

Query: 261 YAKLGDMESASKLFNEMPEK 280
           Y+  G  + A KL   M +K
Sbjct: 550 YSAAGRWKDARKLRIAMRDK 569



 Score = 53.1 bits (126), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 34/137 (24%), Positives = 65/137 (47%), Gaps = 17/137 (12%)

Query: 328 ASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLW 387
           +S+ S    KQ+H  ++RT+  S ++ +S+++ +YS    L+D   +F+   +   ++ W
Sbjct: 16  SSVKSKSQAKQLHAQILRTSLPSPSL-LSTILSIYSNLNLLHDSLLIFNSLPSPPTTLAW 74

Query: 388 NTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTH 447
            ++I   T HG    ++  F  M+ S   PD      +L +CT    + + L + ES+  
Sbjct: 75  KSIIRCYTSHGLFLHSLSFFIQMLASGKYPDHNVFPSVLKSCT----LMKDLRFGESV-- 128

Query: 448 DLGIIPNQEHHACLIEL 464
                     H C+I L
Sbjct: 129 ----------HGCIIRL 135


>gi|115480595|ref|NP_001063891.1| Os09g0555400 [Oryza sativa Japonica Group]
 gi|113632124|dbj|BAF25805.1| Os09g0555400 [Oryza sativa Japonica Group]
 gi|125606583|gb|EAZ45619.1| hypothetical protein OsJ_30287 [Oryza sativa Japonica Group]
          Length = 644

 Score =  317 bits (813), Expect = 8e-84,   Method: Compositional matrix adjust.
 Identities = 175/552 (31%), Positives = 298/552 (53%), Gaps = 37/552 (6%)

Query: 35  EAISSLDLLAQRGIRLPAE-TLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNH 93
           EA+  L  + +RGI LP E TL F+L+ CA  ++ +       H+ +T            
Sbjct: 93  EALPLLRGMIRRGI-LPNEFTLPFLLKACARVQAWE-------HVMVTH----------- 133

Query: 94  LISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSW 153
              +  K G             V  +F  N +L  YA+ G +  +R  FD M +R+VVSW
Sbjct: 134 --GVVVKLGF------------VGQVFVGNALLHSYASAGSLGDSRRFFDEMVDRNVVSW 179

Query: 154 NTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLV 213
           N+MI GYA++G   E    ++ +RR  +  +EF+   +L  C     L+  + VH  +LV
Sbjct: 180 NSMINGYAQAGNTREACSLFEGMRRQGLLADEFTLVSLLFACSAEGNLEFGKLVHSHLLV 239

Query: 214 TGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKL 273
            G   ++++++++VD Y KCG+L  A   FD    ++ ++WT+M+   AK   +++A   
Sbjct: 240 RGCRIDLILANALVDMYGKCGDLLMAHTCFDMMPFKNAVSWTSMLCALAKRASIDAARDW 299

Query: 274 FNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSL 333
           F ++PEK+ +SW  +I+ Y + G   +AL+L+ RM +L + P++ T ++ L AC  +  L
Sbjct: 300 FEQIPEKSIISWNAMISCYVQGGRFHEALDLYNRMKLLGLAPDEFTLAAVLSACGQLGDL 359

Query: 334 KHGKQVHGFLIRTNFRSNTIVM-SSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMIS 392
             GK +H   IR NF +  + + +SL+DMY++CG ++    +F    +K N + WN +I 
Sbjct: 360 ASGKMIHD-CIRDNFHNPGVALFNSLLDMYARCGQVDTAISLFSEMPSK-NVISWNAIIG 417

Query: 393 ALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGII 452
           AL  HG  + A+  F  MV  +  PD+IT   +L+AC H GL++ G  YF++M H   + 
Sbjct: 418 ALAMHGRAQDALMFFRSMVFDAFPPDEITFVALLSACNHGGLLEAGQYYFQAMRHVYNVK 477

Query: 453 PNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQ 512
           P  EH+AC+++LL + G   + ++ ++ MP   D  +W AL G CRIHG+I +G++V+ Q
Sbjct: 478 PGVEHYACMVDLLGRGGQLAKAVDLIKDMPMRPDVVVWGALLGACRIHGHIQIGKQVIKQ 537

Query: 513 LIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSV 572
           L++    S     L+S++     +   ++++R+L+ E   KK   +S IE  + +H    
Sbjct: 538 LLELEGMSGGLFVLISNMLYETHQWEDMKRLRKLMREWGMKKNMGVSSIETNSNIHESGA 597

Query: 573 SDSLHPMRDVLY 584
               H   D +Y
Sbjct: 598 EGIGHESSDDMY 609



 Score =  161 bits (407), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 120/426 (28%), Positives = 192/426 (45%), Gaps = 79/426 (18%)

Query: 112 DKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLK 171
           D +  + L SY  + +G    G + +AR LFD + + D   +N++I  Y  S   +E L 
Sbjct: 41  DDVTSQILASYCALPAG----GGVWYARQLFDRIPDPDRFVYNSLIRAYCNSHCPQEALP 96

Query: 172 FYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYA 231
             + + R  I  NEF+   +L  C +++  +     HG V+  GF+  V + ++++ +YA
Sbjct: 97  LLRGMIRRGILPNEFTLPFLLKACARVQAWEHVMVTHGVVVKLGFVGQVFVGNALLHSYA 156

Query: 232 KCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAG 291
             G L D+RR FDE   R+V++W +M++GYA+ G+   A  LF                G
Sbjct: 157 SAGSLGDSRRFFDEMVDRNVVSWNSMINGYAQAGNTREACSLFE---------------G 201

Query: 292 YTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSN 351
             R GL                  ++ T  S L AC++  +L+ GK VH  L+    R +
Sbjct: 202 MRRQGL----------------LADEFTLVSLLFACSAEGNLEFGKLVHSHLLVRGCRID 245

Query: 352 TIVMSSLIDMYSKCGCLNDGRQVFDLTDNKE----NSML--------------------- 386
            I+ ++L+DMY KCG L      FD+   K      SML                     
Sbjct: 246 LILANALVDMYGKCGDLLMAHTCFDMMPFKNAVSWTSMLCALAKRASIDAARDWFEQIPE 305

Query: 387 -----WNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTY 441
                WN MIS   Q G   +A+ L++ M    + PD+ TLA +L+AC   G +  G   
Sbjct: 306 KSIISWNAMISCYVQGGRFHEALDLYNRMKLLGLAPDEFTLAAVLSACGQLGDLASG--- 362

Query: 442 FESMTHDLGIIPNQEHHA------CLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHG 495
              M HD   I +  H+        L+++ A+ G  D  ++   +MP + +   WNA+ G
Sbjct: 363 --KMIHD--CIRDNFHNPGVALFNSLLDMYARCGQVDTAISLFSEMPSK-NVISWNAIIG 417

Query: 496 VCRIHG 501
              +HG
Sbjct: 418 ALAMHG 423



 Score =  148 bits (374), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 108/429 (25%), Positives = 185/429 (43%), Gaps = 69/429 (16%)

Query: 10  INRKNLPNNCLIQSFLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLK 69
           ++R  +  N +I  +      G   EA S  + + ++G+     TL  +L  C+   +L+
Sbjct: 172 VDRNVVSWNSMINGY---AQAGNTREACSLFEGMRRQGLLADEFTLVSLLFACSAEGNLE 228

Query: 70  LGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGY 129
            GK VH HL L +       L+N L+ MY KCG  + A   FD +P KN  S+ +ML   
Sbjct: 229 FGKLVHSHL-LVRGCRIDLILANALVDMYGKCGDLLMAHTCFDMMPFKNAVSWTSMLCAL 287

Query: 130 ANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFA 189
           A    +  AR+ F+ + E+ ++SWN MI  Y + G   E L  Y  ++   ++ +EF+ A
Sbjct: 288 AKRASIDAARDWFEQIPEKSIISWNAMISCYVQGGRFHEALDLYNRMKLLGLAPDEFTLA 347

Query: 190 GILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDAR 249
            +L+ C +L +L   + +H  +        V + +S++D YA+CG++  A  LF E  ++
Sbjct: 348 AVLSACGQLGDLASGKMIHDCIRDNFHNPGVALFNSLLDMYARCGQVDTAISLFSEMPSK 407

Query: 250 DVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMM 309
           +V++W  ++   A                                +G  Q AL  F  M+
Sbjct: 408 NVISWNAIIGALAM-------------------------------HGRAQDALMFFRSMV 436

Query: 310 ILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLN 369
                P++ TF + L AC       HG    G L    +    +                
Sbjct: 437 FDAFPPDEITFVALLSAC------NHG----GLLEAGQYYFQAM---------------- 470

Query: 370 DGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNAC 429
             R V+++    E+   +  M+  L + G   +A+ L  DM    ++PD +    +L AC
Sbjct: 471 --RHVYNVKPGVEH---YACMVDLLGRGGQLAKAVDLIKDM---PMRPDVVVWGALLGAC 522

Query: 430 THSGLVQEG 438
              G +Q G
Sbjct: 523 RIHGHIQIG 531


>gi|326520249|dbj|BAK07383.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 637

 Score =  317 bits (813), Expect = 8e-84,   Method: Compositional matrix adjust.
 Identities = 173/535 (32%), Positives = 301/535 (56%), Gaps = 17/535 (3%)

Query: 70  LGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGY 129
           LG+  H  L L       T LSN LI +Y    S   +R  F+ +P +N  SYNN+L+  
Sbjct: 50  LGRAAHA-LLLKTALNHHTLLSNRLIELYAMLNSPAASRTAFEDLPYRNAHSYNNLLAAL 108

Query: 130 A-NLGMMKHARNLFDNM--AERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRR-----FSI 181
           +     +  A +L D M  + R+VVS+NT+I   A++G   E L+ +  L R       +
Sbjct: 109 SRGSATLPDALHLLDAMPASSRNVVSYNTIISALARNGRQGEALRVFARLARDRCLGPEV 168

Query: 182 SCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARR 241
           + + F+   + + C  +  L+  R++HG V+V+G    V++++++VDAY+K G + DAR 
Sbjct: 169 ALDRFAVVSVASACAGMGALRPLREMHGAVVVSGVEVTVIMANAMVDAYSKAGRMEDART 228

Query: 242 LFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKA 301
           LF++   +D ++WT+M++GY +   ++ A ++F+ MPE++ ++WT LI+G+ +NG    A
Sbjct: 229 LFNQMSIQDTVSWTSMIAGYCRAKRLDEAIRVFHMMPEQDTIAWTALISGHEQNGEEDAA 288

Query: 302 LELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNF---RSNTIVMSSL 358
           L+LF +M++  + P      S L ACA +  +  G++VHGF++R        N  + ++L
Sbjct: 289 LDLFQQMLVEGMAPTPFALVSSLGACAKLGLVTRGREVHGFILRRRIGLDPFNIFIHNAL 348

Query: 359 IDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPD 418
           IDMYSKCG +     VF     ++  + WN+M++  + +G  +Q++ +F  M+ + V+P 
Sbjct: 349 IDMYSKCGDMATAMLVFARMSERD-FISWNSMVTGFSHNGQGKQSLAMFKRMLDAEVQPT 407

Query: 419 KITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLA---QAGCSDQLM 475
            +T   +L AC+H+GLV +G    ESM +  G+ P  EH+A  I+ L    Q   + + +
Sbjct: 408 YVTFLAVLTACSHAGLVTDGRRILESMQYH-GVEPRAEHYASFIDALGRNHQLEEASEFI 466

Query: 476 NQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALG 535
             L        +  W AL G CR+HGN ++  KV + L    P +S  + +LS+IY+A G
Sbjct: 467 KGLSSRIGPGTTGSWGALLGACRVHGNTEIAEKVAESLFQLEPGNSGRYVMLSNIYAAAG 526

Query: 536 KGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQL 590
           +     ++R ++ E+  +K+QA SWIE+ +  H F   D+ H   + +Y +L++L
Sbjct: 527 QWDDARRIRAIMKEKGLRKDQACSWIEVRSAKHMFVADDTSHCEANEIYGMLDRL 581


>gi|115487922|ref|NP_001066448.1| Os12g0233200 [Oryza sativa Japonica Group]
 gi|77553539|gb|ABA96335.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113648955|dbj|BAF29467.1| Os12g0233200 [Oryza sativa Japonica Group]
          Length = 704

 Score =  317 bits (813), Expect = 8e-84,   Method: Compositional matrix adjust.
 Identities = 169/470 (35%), Positives = 269/470 (57%), Gaps = 3/470 (0%)

Query: 123 NNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLK-FYKVLRRFSI 181
           N ++  YAN   +  A  +FD M ERDVVSW T++ GYA++G  +E  + F +++    +
Sbjct: 182 NALVHFYANHKSLDDAGKVFDEMPERDVVSWTTLVDGYARAGLADEAWRLFCRMVVVGGM 241

Query: 182 SCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARR 241
             N  +    ++   ++  L     +H  V   G   +V + +++VD + KCG +  AR 
Sbjct: 242 RPNAVTLVAAVSAIGQMGLLAFGIMLHKYVTEGGVARSVNLDNALVDMFGKCGCVRYARE 301

Query: 242 LFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKA 301
           +FD  + +DV +WT+MV+ YAK GD+ESA +LF +MP +N VSW+ +IA Y++    ++A
Sbjct: 302 VFDGMEVKDVYSWTSMVNAYAKCGDLESAEQLFKDMPRRNVVSWSCMIAAYSQLNQPEEA 361

Query: 302 LELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVM-SSLID 360
           + LF  M+   + P   T  S L ACA +  L  G+ ++   I +N    T+ + ++LID
Sbjct: 362 VWLFREMIAAGVDPIDATLVSVLSACAQLGCLDLGRWIYENYIVSNKIGLTVNLGNALID 421

Query: 361 MYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKI 420
           M++KCG + +  ++FD    + N + WNTMI A   HG  E+AIRLF  +   ++ PD+I
Sbjct: 422 MFAKCGDVGEASKLFDEMAER-NVVSWNTMIMAHAVHGQSEEAIRLFEQLKGENIVPDQI 480

Query: 421 TLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEK 480
           T   +L +C+HSGLV EG  YF+ M     I P  EH+AC+I+LL + G  ++       
Sbjct: 481 TFLGLLASCSHSGLVSEGRRYFKEMEMFYRIEPRVEHYACMIDLLGKVGLLEEAFEVARG 540

Query: 481 MPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLV 540
           MP E D   W AL   CR+HGN+++G  V D+L++ +P  S  + L+S IY++  K   V
Sbjct: 541 MPMEADEAGWGALLNACRMHGNVEIGACVADKLVELDPSDSGIYVLMSQIYASKNKWDQV 600

Query: 541 EKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQL 590
           + +R  + +R  KK    S IE+E K H F V+D  H   + +YS L+ +
Sbjct: 601 KMLRMTMRDRGVKKNPGCSSIEVEGKFHDFLVADVSHACSEEIYSALKNI 650



 Score =  141 bits (356), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 96/359 (26%), Positives = 171/359 (47%), Gaps = 44/359 (12%)

Query: 47  GIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTF-LSNHLISMYFKCGSDV 105
           G+R  A TL   +    +   L  G  + LH  +T+     +  L N L+ M+ KCG   
Sbjct: 240 GMRPNAVTLVAAVSAIGQMGLLAFG--IMLHKYVTEGGVARSVNLDNALVDMFGKCGCVR 297

Query: 106 DARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGA 165
            AR+VFD + VK+++S+ +M++ YA  G ++ A  LF +M  R+VVSW+ MI  Y++   
Sbjct: 298 YAREVFDGMEVKDVYSWTSMVNAYAKCGDLESAEQLFKDMPRRNVVSWSCMIAAYSQLNQ 357

Query: 166 VEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLS-NVVISS 224
            EE +  ++ +    +   + +   +L+ C +L  L L R ++   +V+  +   V + +
Sbjct: 358 PEEAVWLFREMIAAGVDPIDATLVSVLSACAQLGCLDLGRWIYENYIVSNKIGLTVNLGN 417

Query: 225 SIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPV- 283
           +++D +AKCG++ +A +LFDE   R+V++W TM+  +A  G  E A +LF ++  +N V 
Sbjct: 418 ALIDMFAKCGDVGEASKLFDEMAERNVVSWNTMIMAHAVHGQSEEAIRLFEQLKGENIVP 477

Query: 284 ---SWTTLIAGYTRNGLGQKALELFTRM-MILRIRPNQHTFSSCLCACASIVSLKHGKQV 339
              ++  L+A  + +GL  +    F  M M  RI P    +     AC            
Sbjct: 478 DQITFLGLLASCSHSGLVSEGRRYFKEMEMFYRIEPRVEHY-----AC------------ 520

Query: 340 HGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHG 398
                             +ID+  K G L +  +V      + +   W  +++A   HG
Sbjct: 521 ------------------MIDLLGKVGLLEEAFEVARGMPMEADEAGWGALLNACRMHG 561



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 103/370 (27%), Positives = 177/370 (47%), Gaps = 45/370 (12%)

Query: 251 VLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMI 310
           VL    +V  YA    ++ A K+F+EMPE++ VSWTTL+ GY R GL  +A  LF RM++
Sbjct: 178 VLVGNALVHFYANHKSLDDAGKVFDEMPERDVVSWTTLVDGYARAGLADEAWRLFCRMVV 237

Query: 311 L-RIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLN 369
           +  +RPN  T  + + A   +  L  G  +H ++       +  + ++L+DM+ KCGC+ 
Sbjct: 238 VGGMRPNAVTLVAAVSAIGQMGLLAFGIMLHKYVTEGGVARSVNLDNALVDMFGKCGCVR 297

Query: 370 DGRQVFDLTDNKE------------------------------NSMLWNTMISALTQHGY 399
             R+VFD  + K+                              N + W+ MI+A +Q   
Sbjct: 298 YAREVFDGMEVKDVYSWTSMVNAYAKCGDLESAEQLFKDMPRRNVVSWSCMIAAYSQLNQ 357

Query: 400 DEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFES--MTHDLGIIPNQEH 457
            E+A+ LF +M+ + V P   TL  +L+AC   G +  G   +E+  +++ +G+  N  +
Sbjct: 358 PEEAVWLFREMIAAGVDPIDATLVSVLSACAQLGCLDLGRWIYENYIVSNKIGLTVNLGN 417

Query: 458 HACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQN 517
              LI++ A+ G   +     ++M  E +   WN +     +HG  +   ++ +QL  +N
Sbjct: 418 --ALIDMFAKCGDVGEASKLFDEMA-ERNVVSWNTMIMAHAVHGQSEEAIRLFEQLKGEN 474

Query: 518 --PQSSATHGLLSSI-YSAL-GKGRLVEKVRQLINERQFKKEQAISWIEIENKV----HA 569
             P      GLL+S  +S L  +GR   K  ++    + + E     I++  KV     A
Sbjct: 475 IVPDQITFLGLLASCSHSGLVSEGRRYFKEMEMFYRIEPRVEHYACMIDLLGKVGLLEEA 534

Query: 570 FSVSDSLHPM 579
           F V+  + PM
Sbjct: 535 FEVARGM-PM 543



 Score = 73.2 bits (178), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 48/177 (27%), Positives = 90/177 (50%), Gaps = 8/177 (4%)

Query: 8   RGINRKNLPN-NCLIQSFLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESK 66
           + + R+N+ + +C+I ++  L    Q  EA+     +   G+     TL  +L  CA+  
Sbjct: 335 KDMPRRNVVSWSCMIAAYSQL---NQPEEAVWLFREMIAAGVDPIDATLVSVLSACAQLG 391

Query: 67  SLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNML 126
            L LG+ ++ +  ++ +   T  L N LI M+ KCG   +A K+FD++  +N+ S+N M+
Sbjct: 392 CLDLGRWIYENYIVSNKIGLTVNLGNALIDMFAKCGDVGEASKLFDEMAERNVVSWNTMI 451

Query: 127 SGYANLGMMKHARNLFDNMAERDVVSWNTMIIGY----AKSGAVEEGLKFYKVLRRF 179
             +A  G  + A  LF+ +   ++V      +G     + SG V EG +++K +  F
Sbjct: 452 MAHAVHGQSEEAIRLFEQLKGENIVPDQITFLGLLASCSHSGLVSEGRRYFKEMEMF 508



 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 55/248 (22%), Positives = 113/248 (45%), Gaps = 11/248 (4%)

Query: 278 PEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKH-- 335
           P  N     T++ G+ R  L  +AL LF R++  R+  +  TF   + A A+    +H  
Sbjct: 97  PGPNAYMLGTMMRGFLRARLPARALGLFRRVVRDRLPADARTFVFAVKAAAAAAESEHGG 156

Query: 336 ----GKQVHGFLIRTNFRSNTI-VMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTM 390
               G+ +H   ++  F   ++ V ++L+  Y+    L+D  +VFD    + + + W T+
Sbjct: 157 TPSGGEAIHCAALKCGFVGESVLVGNALVHFYANHKSLDDAGKVFDEMPER-DVVSWTTL 215

Query: 391 ISALTQHGYDEQAIRLFHDM-VRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDL 449
           +    + G  ++A RLF  M V   ++P+ +TL   ++A    GL+  G+   + +T   
Sbjct: 216 VDGYARAGLADEAWRLFCRMVVVGGMRPNAVTLVAAVSAIGQMGLLAFGIMLHKYVTEG- 274

Query: 450 GIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKV 509
           G+  +      L+++  + GC        + M  + D Y W ++       G+++   ++
Sbjct: 275 GVARSVNLDNALVDMFGKCGCVRYAREVFDGMEVK-DVYSWTSMVNAYAKCGDLESAEQL 333

Query: 510 VDQLIDQN 517
              +  +N
Sbjct: 334 FKDMPRRN 341


>gi|359486044|ref|XP_002269662.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g49142-like [Vitis vinifera]
          Length = 689

 Score =  317 bits (813), Expect = 8e-84,   Method: Compositional matrix adjust.
 Identities = 178/542 (32%), Positives = 282/542 (52%), Gaps = 16/542 (2%)

Query: 61  QCAESKSLKLGKRVHLHLKLTQRKTPTT------FLSNHLISMYFKCGSDVDARKVFDKI 114
           +C    SL L  R+ L   L     P++      FL+ H    + K G    A+ V   +
Sbjct: 52  ECTPKPSLNLQLRILLQPILQHFPHPSSYAPIFQFLTRH---NFIKLGQQAHAQIVLHGL 108

Query: 115 PVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEG---LK 171
              N F    M++ YA+ G +  A  +FD +     + +N++I  Y + G        L+
Sbjct: 109 Q-PNAFLAAKMVAMYASSGDLDSAVVVFDRIDNPSSLLYNSIIRAYTRHGXXXXXXXXLE 167

Query: 172 FYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYA 231
            Y  +    +  + F+   +L  C  L  + + R VHGQ L  G   +  + +S++D Y 
Sbjct: 168 AYARMHFLGLLGDNFTLPFVLKSCADLSRVCMGRCVHGQGLRVGLEGDFYVGASLIDMYV 227

Query: 232 KCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAG 291
           KCG + DAR+LFD+   RD+ +W  +++GY K G++  A  LF  M  +N VSWT +I+G
Sbjct: 228 KCGVIGDARKLFDKMIVRDMASWNALIAGYMKEGEIGVAEDLFERMEHRNIVSWTAMISG 287

Query: 292 YTRNGLGQKALELFTRMMI--LRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFR 349
           YT+NG  ++AL LF  M+     ++PN  T  S L ACA   +L+ G+++H F       
Sbjct: 288 YTQNGFAEQALGLFDEMLQDGSEMKPNWVTIVSVLPACAQSAALERGRRIHDFANGIGLH 347

Query: 350 SNTIVMSSLIDMYSKCGCLNDGRQVFDL-TDNKENSMLWNTMISALTQHGYDEQAIRLFH 408
            N+ V ++L  MY+KC  L + R  FD+   N +N + WNTMI+A   HG   +A+ +F 
Sbjct: 348 LNSSVQTALAGMYAKCYSLVEARCCFDMIAQNGKNLIAWNTMITAYASHGCGVEAVSIFE 407

Query: 409 DMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQA 468
           +M+R+ V+PD +T   +L+ C+HSGL+  GL +F  M     + P  EH+AC+++LL +A
Sbjct: 408 NMLRAGVQPDAVTFMGLLSGCSHSGLIDAGLNHFNDMGTIHSVEPRVEHYACVVDLLGRA 467

Query: 469 GCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLS 528
           G   +    + +MP +    +W AL   CR H N+++      +L    P +S  + LLS
Sbjct: 468 GRLVEAKELISQMPMQAGPSVWGALLAACRSHRNLEIAELAARRLFVLEPDNSGNYVLLS 527

Query: 529 SIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLE 588
           ++Y+  G    V+K+R L+  +  KK    SWIEI  K H F  +D  HP    +Y  LE
Sbjct: 528 NLYAEAGMWEEVKKLRALLKYQGMKKSPGCSWIEINGKSHLFMGADKSHPQAKEIYKFLE 587

Query: 589 QL 590
            L
Sbjct: 588 AL 589



 Score =  132 bits (331), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 81/263 (30%), Positives = 138/263 (52%), Gaps = 9/263 (3%)

Query: 54  TLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDK 113
           TL F+L+ CA+   + +G+ VH    L        ++   LI MY KCG   DARK+FDK
Sbjct: 183 TLPFVLKSCADLSRVCMGRCVHGQ-GLRVGLEGDFYVGASLIDMYVKCGVIGDARKLFDK 241

Query: 114 IPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFY 173
           + V+++ S+N +++GY   G +  A +LF+ M  R++VSW  MI GY ++G  E+ L  +
Sbjct: 242 MIVRDMASWNALIAGYMKEGEIGVAEDLFERMEHRNIVSWTAMISGYTQNGFAEQALGLF 301

Query: 174 -KVLRRFS-ISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYA 231
            ++L+  S +  N  +   +L  C +   L+  R++H      G   N  + +++   YA
Sbjct: 302 DEMLQDGSEMKPNWVTIVSVLPACAQSAALERGRRIHDFANGIGLHLNSSVQTALAGMYA 361

Query: 232 KCGELSDARRLFD--ETDARDVLTWTTMVSGYAKLGDMESASKLFNEM----PEKNPVSW 285
           KC  L +AR  FD    + ++++ W TM++ YA  G    A  +F  M     + + V++
Sbjct: 362 KCYSLVEARCCFDMIAQNGKNLIAWNTMITAYASHGCGVEAVSIFENMLRAGVQPDAVTF 421

Query: 286 TTLIAGYTRNGLGQKALELFTRM 308
             L++G + +GL    L  F  M
Sbjct: 422 MGLLSGCSHSGLIDAGLNHFNDM 444



 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 52/172 (30%), Positives = 86/172 (50%), Gaps = 27/172 (15%)

Query: 21  IQSFLSLIS----KGQLSEAISSLDLLAQRGIRLPAE--TLAFILQQCAESKSLKLGKRV 74
           I S+ ++IS     G   +A+   D + Q G  +     T+  +L  CA+S +L+ G+R+
Sbjct: 278 IVSWTAMISGYTQNGFAEQALGLFDEMLQDGSEMKPNWVTIVSVLPACAQSAALERGRRI 337

Query: 75  H-------LHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPV--KNLFSYNNM 125
           H       LHL         + +   L  MY KC S V+AR  FD I    KNL ++N M
Sbjct: 338 HDFANGIGLHL--------NSSVQTALAGMYAKCYSLVEARCCFDMIAQNGKNLIAWNTM 389

Query: 126 LSGYANLGMMKHARNLFDNM----AERDVVSWNTMIIGYAKSGAVEEGLKFY 173
           ++ YA+ G    A ++F+NM     + D V++  ++ G + SG ++ GL  +
Sbjct: 390 ITAYASHGCGVEAVSIFENMLRAGVQPDAVTFMGLLSGCSHSGLIDAGLNHF 441


>gi|226530385|ref|NP_001145846.1| CRR4 [Zea mays]
 gi|219884683|gb|ACL52716.1| unknown [Zea mays]
 gi|414878658|tpg|DAA55789.1| TPA: CRR4 [Zea mays]
          Length = 601

 Score =  317 bits (813), Expect = 8e-84,   Method: Compositional matrix adjust.
 Identities = 182/589 (30%), Positives = 304/589 (51%), Gaps = 42/589 (7%)

Query: 16  PNNCLIQSFLSLISKGQL-SEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRV 74
           P   L  +F+S++SK  L  E I ++  L +RG  +P+  +  +L+ CA S +   G + 
Sbjct: 41  PTAALCCAFVSVLSKLSLHQELIEAVSSLHRRGGAIPSGCIPLVLKSCALSAASCQGTQT 100

Query: 75  HLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGM 134
           H H  L +      F+   L+  Y K G+   A   F+++P+K+    N +++GY+  G 
Sbjct: 101 HCH-ALVRGMLGDVFVQTALVDFYAKNGNMDSAVMAFEEMPIKDPIPMNCLITGYSRSGD 159

Query: 135 MKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTI 194
           ++ AR LFD+M  +   SWN+MI  YA  G  +E L  +  + R   S N  +   + +I
Sbjct: 160 VEEARRLFDSMPRKTSASWNSMIACYAHGGEFQEALTLFDQMLREGASPNAITITTVFSI 219

Query: 195 CVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARR---LFDETDARDV 251
           C                                   AK G+L   RR      E D ++V
Sbjct: 220 C-----------------------------------AKTGDLETGRRAKAWVSEEDLQNV 244

Query: 252 LTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMIL 311
           +  T ++  Y K   ++ A + F+ MP ++ V+W+T+IAGY+ NG   ++LELF RM   
Sbjct: 245 IVHTALMEMYVKCRAIDEARREFDRMPRRDVVAWSTMIAGYSHNGRPHESLELFERMKAT 304

Query: 312 RIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDG 371
             +PN+ T    L ACA + S + G+Q+  ++        + + S+LIDMY+KCG +   
Sbjct: 305 NCKPNEVTLVGVLSACAQLGSDELGEQIGSYIESQTLPLTSYLGSALIDMYTKCGHVARA 364

Query: 372 RQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTH 431
           R VF   + K   + WN+MI  L  +G+ E AI L+ +MV   V+P++IT   +L ACTH
Sbjct: 365 RDVFHRMEQK-VVIAWNSMIRGLALNGFAEDAIALYGEMVGDGVQPNEITFLALLTACTH 423

Query: 432 SGLVQEGLTYFESMTHDLG-IIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLW 490
           +GLV +G+ +F+ M  +     P  EH AC+++LL ++G   +    +  M  E ++ +W
Sbjct: 424 AGLVDKGMAFFQEMKKNKQHASPQVEHCACIVDLLCKSGRLWEAYKFICDMEVEPNAVIW 483

Query: 491 NALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINER 550
             L   CR H ++++ +    +L+   P SS+ + LLS+IY+  G    V ++R L+  +
Sbjct: 484 TTLLSACRAHADVELAKLAAGKLVVLEPNSSSIYVLLSNIYADAGLWGDVREIRDLMRSK 543

Query: 551 QFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQMGEDAP 599
             +K  A SWIE++ +VH F V D+ HP    +Y+V++ L  Q+   +P
Sbjct: 544 NLQKLSAYSWIELDGEVHRFLVQDTYHPRSAEIYNVVDGLGLQLERTSP 592



 Score = 58.9 bits (141), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 65/319 (20%), Positives = 125/319 (39%), Gaps = 46/319 (14%)

Query: 269 SASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSC----L 324
           +A  LF+ +P          ++  ++  L Q+ +E  + +     R      S C    L
Sbjct: 30  AARHLFDAVPRPTAALCCAFVSVLSKLSLHQELIEAVSSLH----RRGGAIPSGCIPLVL 85

Query: 325 CACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCG------------------ 366
            +CA   +   G Q H   +      +  V ++L+D Y+K G                  
Sbjct: 86  KSCALSAASCQGTQTHCHALVRGMLGDVFVQTALVDFYAKNGNMDSAVMAFEEMPIKDPI 145

Query: 367 ---CL----------NDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRS 413
              CL           + R++FD    K  S  WN+MI+     G  ++A+ LF  M+R 
Sbjct: 146 PMNCLITGYSRSGDVEEARRLFDSMPRK-TSASWNSMIACYAHGGEFQEALTLFDQMLRE 204

Query: 414 SVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQ 473
              P+ IT+  + + C  +G ++ G      ++ +   + N   H  L+E+  +    D+
Sbjct: 205 GASPNAITITTVFSICAKTGDLETGRRAKAWVSEE--DLQNVIVHTALMEMYVKCRAIDE 262

Query: 474 LMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQN--PQSSATHGLLSSIY 531
              + ++MP   D   W+ +      +G      ++ +++   N  P      G+LS+  
Sbjct: 263 ARREFDRMP-RRDVVAWSTMIAGYSHNGRPHESLELFERMKATNCKPNEVTLVGVLSAC- 320

Query: 532 SALGKGRLVEKVRQLINER 550
           + LG   L E++   I  +
Sbjct: 321 AQLGSDELGEQIGSYIESQ 339


>gi|449441542|ref|XP_004138541.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like [Cucumis sativus]
          Length = 652

 Score =  317 bits (813), Expect = 9e-84,   Method: Compositional matrix adjust.
 Identities = 190/579 (32%), Positives = 290/579 (50%), Gaps = 71/579 (12%)

Query: 80  LTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYN-----NMLSGYANLGM 134
           LTQ K P   L  H IS+   C +    +KV  +I + + F YN     N+++ +  L  
Sbjct: 57  LTQ-KHPRWVLEEHFISLLRSCKTVALLQKVQAQI-ITHGFQYNGYVAPNVVTSWVGLKQ 114

Query: 135 MKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTI 194
           M HAR+LFD+  +  V  WN +  GY  +    E +  +  ++   +  N F+F  +L  
Sbjct: 115 MAHARHLFDHFPDPKVELWNAISRGYFHNAFYREVVFLFGKMKSMDVRPNCFTFPLVLKS 174

Query: 195 CVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAK---------------------- 232
           C K+       ++H +V+  G   N  ++++++D Y+                       
Sbjct: 175 CAKIGAFVEGEEIHCEVIKGGLEGNQFVATTLIDVYSGGRAIGSAYKLFVGMLERNIVAW 234

Query: 233 ---------CGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFN-------- 275
                    C  ++ ARRLFD    RDV+ W  MVSGY ++GDM++A KLF+        
Sbjct: 235 TSMISGYILCNRVALARRLFDLAPERDVVLWNIMVSGYIEIGDMKAARKLFDTMPYRDTM 294

Query: 276 -----------------------EMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMI-L 311
                                  EMPE+N  SW  LI GY  NG   + L  F RM+I  
Sbjct: 295 SWNTMLNGYANNGDVEACEQLFEEMPERNVFSWNGLIGGYAHNGCFFEVLRCFKRMLIDG 354

Query: 312 RIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDG 371
            + PN  T  + L ACA + +L  GK VH +     F+ +  V ++LIDMYSKCG + + 
Sbjct: 355 LVVPNDATLVTVLSACARLGALDLGKWVHVYAATIGFKGSIYVGNALIDMYSKCGLIENA 414

Query: 372 RQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTH 431
            +VF+  D K+  + WN+MI  L  HG    A+ LFH M  +  KPD IT   +L +CTH
Sbjct: 415 MEVFESMDLKD-LITWNSMICGLATHGCGADALTLFHQMKINGEKPDGITFIGVLCSCTH 473

Query: 432 SGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWN 491
            GLV+EG +YF SM ++  I P  EH+ C+++L  +AG  D+ +  +++MP E D+ +W 
Sbjct: 474 LGLVEEGTSYFNSMVNEYSIAPQIEHYGCMVDLFGRAGLLDRAIEFVKRMPMEADAVIWA 533

Query: 492 ALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQ 551
           AL G CRI+ NID+    + +LI   P++ A + LLS+IY  LG+ + V +++ L+ +  
Sbjct: 534 ALLGACRIYKNIDLAELALQKLIVLEPKNPANYVLLSNIYGDLGRWKDVARLKILMRDTG 593

Query: 552 FKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQL 590
            KK    S IE+ + V  F   D  H     +Y VL+ L
Sbjct: 594 SKKLPGCSLIEVNDSVVEFYSLDERHSQSKEIYGVLKGL 632


>gi|357154895|ref|XP_003576937.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
           mitochondrial-like [Brachypodium distachyon]
          Length = 661

 Score =  317 bits (813), Expect = 9e-84,   Method: Compositional matrix adjust.
 Identities = 166/470 (35%), Positives = 269/470 (57%), Gaps = 3/470 (0%)

Query: 123 NNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLK-FYKVLRRFSI 181
           N ++  YAN   + HARNLFD M +RDVVSW T++ GYA+ G  +E  + F +++    +
Sbjct: 180 NALVHFYANHRSLAHARNLFDEMPDRDVVSWTTLVDGYARRGLADEAWRVFCRMVVAGGL 239

Query: 182 SCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARR 241
             NE +   +++   ++  L   R V+  V   G   +V + ++++D + K G  + AR 
Sbjct: 240 QPNEVTLVAVVSAMGQMGLLAFGRMVYRYVADGGVGRSVNLENALIDMFGKFGCAASARE 299

Query: 242 LFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKA 301
           +FD    +DV +WTTMV+ YAK GD+ESA++LF++MP +N VSW+ +IA Y++    ++A
Sbjct: 300 VFDSMAVKDVYSWTTMVNAYAKCGDLESAARLFDDMPRRNAVSWSCMIAAYSQANQPEEA 359

Query: 302 LELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVH-GFLIRTNFRSNTIVMSSLID 360
           + LF  M+   + P      S L ACA +  L  G+ ++  ++I         + ++ ID
Sbjct: 360 VRLFKAMIEEGVEPINAGLVSVLSACAQLGCLDLGRWIYDNYVISGKAVLTVNLGNAFID 419

Query: 361 MYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKI 420
           +Y+KCG  +   ++F     + N + WN+MI A   HG  E+ +RLF  +  + + PD+I
Sbjct: 420 VYAKCGDFDAASKLFAEMAER-NVVSWNSMIMAHAVHGQSEEVLRLFEQLKGTCIVPDEI 478

Query: 421 TLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEK 480
           T   +L+AC+HSGLV EG  YF+ M    GI P  EH+AC+I+LL + G  ++     + 
Sbjct: 479 TFLGLLSACSHSGLVSEGRRYFKEMKLIYGIEPKSEHYACMIDLLGKIGLLEEAFEVAKG 538

Query: 481 MPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLV 540
           MP E D   W AL   CR++GN+++G    D+L+  NP  S  + L+S IY++  K   V
Sbjct: 539 MPMETDEAGWGALLNACRMYGNVEIGEFAADKLVQLNPLDSGIYVLMSQIYASKNKWDQV 598

Query: 541 EKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQL 590
           + +R L+ ER  KK    S IE++ K H F V+D  H   + +Y+ L+ +
Sbjct: 599 KILRVLMRERGVKKNPGCSSIEVDGKFHEFLVADVSHVHSEDIYAALKNI 648



 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 69/238 (28%), Positives = 127/238 (53%), Gaps = 6/238 (2%)

Query: 90  LSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERD 149
           L N LI M+ K G    AR+VFD + VK+++S+  M++ YA  G ++ A  LFD+M  R+
Sbjct: 280 LENALIDMFGKFGCAASAREVFDSMAVKDVYSWTTMVNAYAKCGDLESAARLFDDMPRRN 339

Query: 150 VVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHG 209
            VSW+ MI  Y+++   EE ++ +K +    +         +L+ C +L  L L R ++ 
Sbjct: 340 AVSWSCMIAAYSQANQPEEAVRLFKAMIEEGVEPINAGLVSVLSACAQLGCLDLGRWIYD 399

Query: 210 QVLVTG-FLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDME 268
             +++G  +  V + ++ +D YAKCG+   A +LF E   R+V++W +M+  +A  G  E
Sbjct: 400 NYVISGKAVLTVNLGNAFIDVYAKCGDFDAASKLFAEMAERNVVSWNSMIMAHAVHGQSE 459

Query: 269 SASKLFNEMPE----KNPVSWTTLIAGYTRNGLGQKALELFTRM-MILRIRPNQHTFS 321
              +LF ++       + +++  L++  + +GL  +    F  M +I  I P    ++
Sbjct: 460 EVLRLFEQLKGTCIVPDEITFLGLLSACSHSGLVSEGRRYFKEMKLIYGIEPKSEHYA 517



 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 100/371 (26%), Positives = 168/371 (45%), Gaps = 41/371 (11%)

Query: 248 ARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTR 307
           A+ VL    +V  YA    +  A  LF+EMP+++ VSWTTL+ GY R GL  +A  +F R
Sbjct: 173 AQSVLVGNALVHFYANHRSLAHARNLFDEMPDRDVVSWTTLVDGYARRGLADEAWRVFCR 232

Query: 308 MMIL-RIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCG 366
           M++   ++PN+ T  + + A   +  L  G+ V+ ++       +  + ++LIDM+ K G
Sbjct: 233 MVVAGGLQPNEVTLVAVVSAMGQMGLLAFGRMVYRYVADGGVGRSVNLENALIDMFGKFG 292

Query: 367 CLNDGRQVFD----------------------------LTDN--KENSMLWNTMISALTQ 396
           C    R+VFD                            L D+  + N++ W+ MI+A +Q
Sbjct: 293 CAASAREVFDSMAVKDVYSWTTMVNAYAKCGDLESAARLFDDMPRRNAVSWSCMIAAYSQ 352

Query: 397 HGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQE 456
               E+A+RLF  M+   V+P    L  +L+AC   G +  G   +++       +    
Sbjct: 353 ANQPEEAVRLFKAMIEEGVEPINAGLVSVLSACAQLGCLDLGRWIYDNYVISGKAVLTVN 412

Query: 457 HHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQ 516
                I++ A+ G  D       +M  E +   WN++     +HG  +   ++ +QL   
Sbjct: 413 LGNAFIDVYAKCGDFDAASKLFAEMA-ERNVVSWNSMIMAHAVHGQSEEVLRLFEQLKGT 471

Query: 517 N--PQSSATHGLLSSI-YSAL-GKGRLVEKVRQLINERQFKKEQAISWIEIENKV----H 568
              P      GLLS+  +S L  +GR   K  +LI   + K E     I++  K+     
Sbjct: 472 CIVPDEITFLGLLSACSHSGLVSEGRRYFKEMKLIYGIEPKSEHYACMIDLLGKIGLLEE 531

Query: 569 AFSVSDSLHPM 579
           AF V+  + PM
Sbjct: 532 AFEVAKGM-PM 541



 Score = 62.8 bits (151), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 43/175 (24%), Positives = 82/175 (46%), Gaps = 10/175 (5%)

Query: 7   PRGINRKNLPNNCLIQSFLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESK 66
           PR   R  +  +C+I ++       Q  EA+     + + G+      L  +L  CA+  
Sbjct: 336 PR---RNAVSWSCMIAAY---SQANQPEEAVRLFKAMIEEGVEPINAGLVSVLSACAQLG 389

Query: 67  SLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNML 126
            L LG+ ++ +  ++ +   T  L N  I +Y KCG    A K+F ++  +N+ S+N+M+
Sbjct: 390 CLDLGRWIYDNYVISGKAVLTVNLGNAFIDVYAKCGDFDAASKLFAEMAERNVVSWNSMI 449

Query: 127 SGYANLGMMKHARNLFDNMAERDVVSWNTMIIGY----AKSGAVEEGLKFYKVLR 177
             +A  G  +    LF+ +    +V      +G     + SG V EG +++K ++
Sbjct: 450 MAHAVHGQSEEVLRLFEQLKGTCIVPDEITFLGLLSACSHSGLVSEGRRYFKEMK 504


>gi|302801784|ref|XP_002982648.1| hypothetical protein SELMODRAFT_51938 [Selaginella moellendorffii]
 gi|300149747|gb|EFJ16401.1| hypothetical protein SELMODRAFT_51938 [Selaginella moellendorffii]
          Length = 481

 Score =  317 bits (813), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 155/484 (32%), Positives = 285/484 (58%), Gaps = 12/484 (2%)

Query: 58  ILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVK 117
           ++++C + ++L+ G+RVH  ++    +  T FL N L+ MY KCGS  DAR+ F+KI  K
Sbjct: 1   LVRRCRDRQALEEGRRVHEQIRKNGFEGET-FLGNLLVEMYAKCGSWEDARQAFEKIEHK 59

Query: 118 NLFSYNN--------MLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEG 169
           N FS+          +++ Y   G +  A  +FD ++ R++++WNT++  YA+ G  +E 
Sbjct: 60  NAFSFGTNQPVLGTAIVTMYGKSGNLVEASQVFDRLSSRNIITWNTLMGAYAQYGHPDEV 119

Query: 170 LKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDA 229
           L+  K +    +  N  ++  +L  C +LE L   + +H ++  TG++ + V+ S++V+ 
Sbjct: 120 LRLQKRMELEGVKQNRVTYLSLLDACSELESLTDGQALHARITATGYVGDAVLDSAVVNM 179

Query: 230 YAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLG-DMESASKLFNEMPEKNPVSWTTL 288
           Y KC  L  ARR+FD    +  +TWTT++S YA+ G D+E+A ++F+ M  +  V+W TL
Sbjct: 180 YTKCKSLERARRVFDRMQLKTEVTWTTLISAYAQQGQDLENAREVFDRMTTRTVVTWNTL 239

Query: 289 IAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNF 348
           +  Y ++G  ++A+ L+ RM    + P++ T+ + + AC  + SL  G+ VH  ++R   
Sbjct: 240 LTAYGQHGHSEEAIRLYQRMEPDGVEPDEITYVTIVGACGDMQSLAEGRPVHDRIVRAGL 299

Query: 349 RSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFH 408
            +  +V ++L+ MY KCG L++ R++FD +D   N + WN MI A  Q+G  +Q + L+ 
Sbjct: 300 ENGALVSTALVSMYGKCGSLDEARKIFDGSD-LSNLVSWNAMIVAYAQNGEGKQGLELYE 358

Query: 409 DMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQA 468
            M    V+P+ +T   +L AC H+GL+ E    F S+  D GI    EH +C+ ++L + 
Sbjct: 359 LMNLGGVEPNGVTYTGVLFACAHAGLLDEAWKQFVSLKTDRGIEWEDEHFSCMTDMLGRL 418

Query: 469 GCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLS 528
           G  ++    L++ P +     W +L   C++HG+++ G++V  + + +NP++S+++ +LS
Sbjct: 419 GRLEEAEEFLKRFP-QAGGVPWLSLLNSCQMHGDLERGKRVSQEAMKRNPETSSSYVMLS 477

Query: 529 SIYS 532
           +IY+
Sbjct: 478 NIYA 481



 Score =  154 bits (388), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 97/383 (25%), Positives = 183/383 (47%), Gaps = 37/383 (9%)

Query: 47  GIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVD 106
           G++    T   +L  C+E +SL  G+ +H  +  T        L + +++MY KC S   
Sbjct: 130 GVKQNRVTYLSLLDACSELESLTDGQALHARITATG-YVGDAVLDSAVVNMYTKCKSLER 188

Query: 107 ARKVFDKIPVKNLFSYNNMLSGYANLGM-MKHARNLFDNMAERDVVSWNTMIIGYAKSGA 165
           AR+VFD++ +K   ++  ++S YA  G  +++AR +FD M  R VV+WNT++  Y + G 
Sbjct: 189 ARRVFDRMQLKTEVTWTTLISAYAQQGQDLENAREVFDRMTTRTVVTWNTLLTAYGQHGH 248

Query: 166 VEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSS 225
            EE ++ Y+ +    +  +E ++  I+  C  ++ L   R VH +++  G  +  ++S++
Sbjct: 249 SEEAIRLYQRMEPDGVEPDEITYVTIVGACGDMQSLAEGRPVHDRIVRAGLENGALVSTA 308

Query: 226 IVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSW 285
           +V  Y KCG L +AR++FD +D  ++++W  M+  YA+                      
Sbjct: 309 LVSMYGKCGSLDEARKIFDGSDLSNLVSWNAMIVAYAQ---------------------- 346

Query: 286 TTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHG-KQVHGFLI 344
                    NG G++ LEL+  M +  + PN  T++  L ACA    L    KQ      
Sbjct: 347 ---------NGEGKQGLELYELMNLGGVEPNGVTYTGVLFACAHAGLLDEAWKQFVSLKT 397

Query: 345 RTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAI 404
                      S + DM  + G L +  + F     +   + W +++++   HG  E+  
Sbjct: 398 DRGIEWEDEHFSCMTDMLGRLGRLEEAEE-FLKRFPQAGGVPWLSLLNSCQMHGDLERGK 456

Query: 405 RLFHDMVRSSVKPDKITLAVILN 427
           R+  + ++ +  P+  +  V+L+
Sbjct: 457 RVSQEAMKRN--PETSSSYVMLS 477


>gi|242034539|ref|XP_002464664.1| hypothetical protein SORBIDRAFT_01g023020 [Sorghum bicolor]
 gi|241918518|gb|EER91662.1| hypothetical protein SORBIDRAFT_01g023020 [Sorghum bicolor]
          Length = 650

 Score =  317 bits (813), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 166/487 (34%), Positives = 277/487 (56%), Gaps = 3/487 (0%)

Query: 118 NLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLK-FYKVL 176
           ++F  N  +  ++  G M  AR LFD    RDVVSWNT+I GY +SG   E L+ F++++
Sbjct: 155 DVFVVNAGVHFWSVSGSMVLARRLFDESPARDVVSWNTLIGGYVRSGLPREALELFWRLV 214

Query: 177 RRF-SISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGE 235
               ++  +E +  G ++ C ++ +L+L +++H  V   G    V + ++++D Y KCG 
Sbjct: 215 EDGKAVRPDEVTMIGAVSGCAQMGDLELGKRLHEFVDSKGVRCTVRLMNAVMDMYVKCGS 274

Query: 236 LSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRN 295
           L  A+ +F+  D + V++WTTM+ G+A+LG ME A  LF+EMPE++   W  L+AGY +N
Sbjct: 275 LELAKSVFERIDNKTVVSWTTMIVGHARLGMMEDARMLFDEMPERDVFPWNALMAGYVQN 334

Query: 296 GLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVM 355
             G++A+ LF  M   ++ PN+ T  + L AC+ + +L+ G  VH ++ R     +  + 
Sbjct: 335 KQGKEAIALFHEMQESKVDPNEITMVNLLSACSQLGALEMGMWVHHYIDRHQLYLSVALG 394

Query: 356 SSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSV 415
           +SL+DMY+KCG +     +F    +K N++ W  MI  L  HG+ ++AI  F  M+   +
Sbjct: 395 TSLVDMYAKCGNIKKAICIFKEIPDK-NALTWTAMICGLANHGHADEAIEYFQRMIDLGL 453

Query: 416 KPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLM 475
           +PD+IT   +L+AC H+GLV+EG  +F  M     +    +H++C+I+LL +AG  D+  
Sbjct: 454 QPDEITFIGVLSACCHAGLVKEGRQFFSLMHEKYHLERKMKHYSCMIDLLGRAGHLDEAE 513

Query: 476 NQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALG 535
             +  MP + D+ +W AL   CR+HGNI +G K   +L++ +P  S  + LL+++Y+   
Sbjct: 514 QLVNTMPMDPDAVVWGALFFACRMHGNITLGEKAAMKLVELDPSDSGIYVLLANMYAEAN 573

Query: 536 KGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQMG 595
             +  +KVR ++     +K    S IE+   VH F V D  H     +Y  L  +  QM 
Sbjct: 574 MRKKADKVRVMMRHLGVEKVPGCSCIELNGVVHEFIVKDKSHLDTIAIYDCLHGITLQMK 633

Query: 596 EDAPSLD 602
             A  +D
Sbjct: 634 HTANLID 640



 Score =  170 bits (430), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 108/391 (27%), Positives = 180/391 (46%), Gaps = 48/391 (12%)

Query: 9   GINRKNLPNNCLIQSFLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSL 68
           G  R  LP   L + F  L+  G              + +R    T+   +  CA+   L
Sbjct: 196 GYVRSGLPREAL-ELFWRLVEDG--------------KAVRPDEVTMIGAVSGCAQMGDL 240

Query: 69  KLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSG 128
           +LGKR+H  +     +  T  L N ++ MY KCGS   A+ VF++I  K + S+  M+ G
Sbjct: 241 ELGKRLHEFVDSKGVRC-TVRLMNAVMDMYVKCGSLELAKSVFERIDNKTVVSWTTMIVG 299

Query: 129 YANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSF 188
           +A LGMM+ AR LFD M ERDV  WN ++ GY ++   +E +  +  ++   +  NE + 
Sbjct: 300 HARLGMMEDARMLFDEMPERDVFPWNALMAGYVQNKQGKEAIALFHEMQESKVDPNEITM 359

Query: 189 AGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDA 248
             +L+ C +L  L++   VH  +       +V + +S+VD YAKCG +  A  +F E   
Sbjct: 360 VNLLSACSQLGALEMGMWVHHYIDRHQLYLSVALGTSLVDMYAKCGNIKKAICIFKEIPD 419

Query: 249 RDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRM 308
           ++ LTWT M+ G A                                +G   +A+E F RM
Sbjct: 420 KNALTWTAMICGLAN-------------------------------HGHADEAIEYFQRM 448

Query: 309 MILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFL-IRTNFRSNTIVMSSLIDMYSKCGC 367
           + L ++P++ TF   L AC     +K G+Q    +  + +        S +ID+  + G 
Sbjct: 449 IDLGLQPDEITFIGVLSACCHAGLVKEGRQFFSLMHEKYHLERKMKHYSCMIDLLGRAGH 508

Query: 368 LNDGRQVFDLTDNKENSMLWNTMISALTQHG 398
           L++  Q+ +      ++++W  +  A   HG
Sbjct: 509 LDEAEQLVNTMPMDPDAVVWGALFFACRMHG 539



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 102/400 (25%), Positives = 184/400 (46%), Gaps = 73/400 (18%)

Query: 184 NEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLF 243
           +  +F  +L  C +L+       V G V   GF ++V + ++ V  ++  G +  ARRLF
Sbjct: 120 DHLTFPFLLKACARLQYRPYGAAVLGHVQKLGFSADVFVVNAGVHFWSVSGSMVLARRLF 179

Query: 244 DETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALE 303
           DE+ ARDV++W T++ G                               Y R+GL ++ALE
Sbjct: 180 DESPARDVVSWNTLIGG-------------------------------YVRSGLPREALE 208

Query: 304 LFTRMMI--LRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDM 361
           LF R++     +RP++ T    +  CA +  L+ GK++H F+     R    +M++++DM
Sbjct: 209 LFWRLVEDGKAVRPDEVTMIGAVSGCAQMGDLELGKRLHEFVDSKGVRCTVRLMNAVMDM 268

Query: 362 YSKCGCLNDGRQVFDLTDNK-------------------ENSML-----------WNTMI 391
           Y KCG L   + VF+  DNK                   +  ML           WN ++
Sbjct: 269 YVKCGSLELAKSVFERIDNKTVVSWTTMIVGHARLGMMEDARMLFDEMPERDVFPWNALM 328

Query: 392 SALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMT-HDLG 450
           +   Q+   ++AI LFH+M  S V P++IT+  +L+AC+  G ++ G+     +  H L 
Sbjct: 329 AGYVQNKQGKEAIALFHEMQESKVDPNEITMVNLLSACSQLGALEMGMWVHHYIDRHQLY 388

Query: 451 IIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRI--HGNIDMGRK 508
           +  +      L+++ A+ G   + +   +++P + ++  W A+  +C +  HG+ D   +
Sbjct: 389 L--SVALGTSLVDMYAKCGNIKKAICIFKEIP-DKNALTWTAM--ICGLANHGHADEAIE 443

Query: 509 VVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLIN 548
              ++ID   Q          + SA     LV++ RQ  +
Sbjct: 444 YFQRMIDLGLQPDEI--TFIGVLSACCHAGLVKEGRQFFS 481


>gi|242051881|ref|XP_002455086.1| hypothetical protein SORBIDRAFT_03g004125 [Sorghum bicolor]
 gi|241927061|gb|EES00206.1| hypothetical protein SORBIDRAFT_03g004125 [Sorghum bicolor]
          Length = 627

 Score =  317 bits (812), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 153/441 (34%), Positives = 259/441 (58%), Gaps = 2/441 (0%)

Query: 151 VSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVK-LEELKLTRQVHG 209
           V+WN +I G+ + G   E    +  + R   +    ++  +L+ C K   ++ L  QVHG
Sbjct: 88  VAWNALISGHNRGGRFGESCGSFVDMARAGAAPTPVTYVSVLSACGKGTRDVLLGMQVHG 147

Query: 210 QVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMES 269
           +V+ +G L ++ + +++VD YA+C ++  A ++FD    R V++WT+++SG A+LG ++ 
Sbjct: 148 RVVGSGVLPDLRVENALVDMYAECADMGSAWKVFDGMQVRSVVSWTSLLSGLARLGQVDE 207

Query: 270 ASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACAS 329
           A  LF+ MPE++ VSWT +I GY      ++ALE+F  M    +  ++ T  S + ACA 
Sbjct: 208 ARDLFDRMPERDTVSWTAMIDGYVWAARFREALEMFREMQYSNVSADEFTMVSVITACAQ 267

Query: 330 IVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNT 389
           + +L+ G+ V  ++ R   + +  V ++LIDMYSKCG +     VF    +++    W  
Sbjct: 268 LGALEMGEWVRVYMSRQGIKMDAFVGNALIDMYSKCGSIERALDVFKGMHHRDK-FTWTA 326

Query: 390 MISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDL 449
           +I  L  +GY+E+AI +FH M+R S  PD++T   +L ACTH+GLV +G  +F SM    
Sbjct: 327 IILGLAVNGYEEEAIEMFHRMIRVSETPDEVTFIGVLTACTHAGLVDKGREFFLSMIEAY 386

Query: 450 GIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKV 509
            I PN  H+ C+I+LL +AG   + ++ +++MP   +S +W  L   CR+HGN ++G  V
Sbjct: 387 NIAPNVVHYGCIIDLLGRAGKITEALDTIDQMPMTPNSTIWGTLLAACRVHGNSEIGELV 446

Query: 510 VDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHA 569
            ++L++ +P++S  + LLS+IY+   +   V ++R  I E+  KKE   S IE++  +H 
Sbjct: 447 AERLLELDPENSMVYILLSNIYAKCNRWEDVRRLRHAIMEKGIKKEPGCSLIEMDGIIHE 506

Query: 570 FSVSDSLHPMRDVLYSVLEQL 590
           F   D  HPM   +YS LE +
Sbjct: 507 FVAGDQSHPMSKEIYSKLESI 527



 Score =  166 bits (420), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 101/373 (27%), Positives = 174/373 (46%), Gaps = 34/373 (9%)

Query: 31  GQLSEAISSLDLLAQRGIRLPAETLAFILQQCAE-SKSLKLGKRVHLHLKLTQRKTPTTF 89
           G+  E+  S   +A+ G      T   +L  C + ++ + LG +VH  + +     P   
Sbjct: 101 GRFGESCGSFVDMARAGAAPTPVTYVSVLSACGKGTRDVLLGMQVHGRV-VGSGVLPDLR 159

Query: 90  LSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERD 149
           + N L+ MY +C     A KVFD + V+++ S+ ++LSG A LG +  AR+LFD M ERD
Sbjct: 160 VENALVDMYAECADMGSAWKVFDGMQVRSVVSWTSLLSGLARLGQVDEARDLFDRMPERD 219

Query: 150 VVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHG 209
            VSW  MI GY  +    E L+ ++ ++  ++S +EF+   ++T C +L  L++   V  
Sbjct: 220 TVSWTAMIDGYVWAARFREALEMFREMQYSNVSADEFTMVSVITACAQLGALEMGEWVRV 279

Query: 210 QVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMES 269
            +   G   +  + ++++D Y+KCG +  A  +F     RD  TWT ++ G A       
Sbjct: 280 YMSRQGIKMDAFVGNALIDMYSKCGSIERALDVFKGMHHRDKFTWTAIILGLAV------ 333

Query: 270 ASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACAS 329
                                    NG  ++A+E+F RM+ +   P++ TF   L AC  
Sbjct: 334 -------------------------NGYEEEAIEMFHRMIRVSETPDEVTFIGVLTACTH 368

Query: 330 IVSLKHGKQVHGFLIRT-NFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWN 388
              +  G++    +I   N   N +    +ID+  + G + +     D      NS +W 
Sbjct: 369 AGLVDKGREFFLSMIEAYNIAPNVVHYGCIIDLLGRAGKITEALDTIDQMPMTPNSTIWG 428

Query: 389 TMISALTQHGYDE 401
           T+++A   HG  E
Sbjct: 429 TLLAACRVHGNSE 441



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 56/244 (22%), Positives = 103/244 (42%), Gaps = 33/244 (13%)

Query: 281 NPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACA-SIVSLKHGKQV 339
            PV+W  LI+G+ R G   ++   F  M      P   T+ S L AC      +  G QV
Sbjct: 86  TPVAWNALISGHNRGGRFGESCGSFVDMARAGAAPTPVTYVSVLSACGKGTRDVLLGMQV 145

Query: 340 HGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVF------------------------ 375
           HG ++ +    +  V ++L+DMY++C  +    +VF                        
Sbjct: 146 HGRVVGSGVLPDLRVENALVDMYAECADMGSAWKVFDGMQVRSVVSWTSLLSGLARLGQV 205

Query: 376 ----DLTDN--KENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNAC 429
               DL D   + +++ W  MI          +A+ +F +M  S+V  D+ T+  ++ AC
Sbjct: 206 DEARDLFDRMPERDTVSWTAMIDGYVWAARFREALEMFREMQYSNVSADEFTMVSVITAC 265

Query: 430 THSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYL 489
              G ++ G      M+   GI  +      LI++ ++ G  ++ ++  + M +  D + 
Sbjct: 266 AQLGALEMGEWVRVYMSRQ-GIKMDAFVGNALIDMYSKCGSIERALDVFKGM-HHRDKFT 323

Query: 490 WNAL 493
           W A+
Sbjct: 324 WTAI 327



 Score = 52.8 bits (125), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 52/227 (22%), Positives = 94/227 (41%), Gaps = 10/227 (4%)

Query: 299 QKALELFTRMMILRIRPNQHTFSSCLCACASIV----SLKHGKQVHGFLIRTNFRSNTIV 354
           + A+  + RM+    RP+ +TF + L A A       S    + VH  ++R     N  V
Sbjct: 1   EDAVAGYARMLARGGRPDAYTFPALLKAVARAAGGSGSAAPARAVHAHVVRLGMGRNAHV 60

Query: 355 MSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSS 414
            SSL+  Y+      DG     L    +  + WN +IS   + G   ++   F DM R+ 
Sbjct: 61  ASSLVAAYTA---GGDGAAARALVGECDTPVAWNALISGHNRGGRFGESCGSFVDMARAG 117

Query: 415 VKPDKITLAVILNACTHSGL-VQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQ 473
             P  +T   +L+AC      V  G+     +    G++P+      L+++ A+      
Sbjct: 118 AAPTPVTYVSVLSACGKGTRDVLLGMQVHGRVVGS-GVLPDLRVENALVDMYAECADMGS 176

Query: 474 LMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQS 520
                + M         + L G+ R+ G +D  R + D++ +++  S
Sbjct: 177 AWKVFDGMQVRSVVSWTSLLSGLARL-GQVDEARDLFDRMPERDTVS 222


>gi|297722071|ref|NP_001173399.1| Os03g0317100 [Oryza sativa Japonica Group]
 gi|255674461|dbj|BAH92127.1| Os03g0317100 [Oryza sativa Japonica Group]
          Length = 706

 Score =  317 bits (812), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 172/551 (31%), Positives = 282/551 (51%), Gaps = 74/551 (13%)

Query: 86  PTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNM 145
           P+      L+  Y + G   DA ++F ++P +N  SY  +L G  + G +  AR LFD M
Sbjct: 110 PSVVSFTSLLRGYVRHGLLADAIRLFQQMPERNHVSYTVLLGGLLDAGRVNEARRLFDEM 169

Query: 146 AERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTR 205
            +RDVV+W  M+ GY ++G + E    +  + +                           
Sbjct: 170 PDRDVVAWTAMLSGYCQAGRITEARALFDEMPK--------------------------- 202

Query: 206 QVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLG 265
                        NVV  ++++  YA+ GE++ AR+LF+    R+ ++WT M+ GY + G
Sbjct: 203 ------------RNVVSWTAMISGYAQNGEVNLARKLFEVMPERNEVSWTAMLVGYIQAG 250

Query: 266 DMESASKLFNEMPEKNPV--------------------------------SWTTLIAGYT 293
            +E A++LFN MPE +PV                                +W+ +I  Y 
Sbjct: 251 HVEDAAELFNAMPE-HPVAACNAMMVGFGQRGMVDAAKTVFEKMCERDDGTWSAMIKAYE 309

Query: 294 RNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTI 353
           +N    +AL  F  M+   +RPN  +  S L  CA++  L +G++VH  ++R +F  +  
Sbjct: 310 QNEFLMEALSTFREMLWRGVRPNYPSVISILTVCAALAVLDYGREVHAAMLRCSFDMDVF 369

Query: 354 VMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRS 413
            +S+LI MY KCG L+  ++VF   + K+  M WN+MI+   QHG  EQA+ +FHDM  +
Sbjct: 370 AVSALITMYIKCGNLDKAKRVFHTFEPKDIVM-WNSMITGYAQHGLGEQALGIFHDMRLA 428

Query: 414 SVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQ 473
            + PD IT    L AC+++G V+EG   F SMT +  I P  EH++C+++LL ++G  ++
Sbjct: 429 GMSPDGITYIGALTACSYTGKVKEGREIFNSMTVNSSIRPGAEHYSCMVDLLGRSGLVEE 488

Query: 474 LMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSA 533
             + ++ MP E D+ +W AL G CR+H N ++      +L++  P ++  + LLS IY++
Sbjct: 489 AFDLIKNMPVEPDAVIWGALMGACRMHRNAEIAEFAAKKLLELEPGNAGPYVLLSHIYTS 548

Query: 534 LGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSL-HPMRDVLYSVLEQLAG 592
           +G+     K+R+ I+ R   K    SWIE + +VH F+  D L HP    +  +LE+L G
Sbjct: 549 VGRWEDASKMRKFISSRNLNKSPGCSWIEYDKRVHLFTSGDVLAHPEHAAILRILEKLDG 608

Query: 593 QMGEDAPSLDA 603
            + E   S D 
Sbjct: 609 LLMESGYSADG 619



 Score =  105 bits (263), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 84/354 (23%), Positives = 146/354 (41%), Gaps = 81/354 (22%)

Query: 92  NHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVV 151
           N  I+   + G+   AR  F+ +P++   SYN +L+GY    +   A  LF  M  RD+ 
Sbjct: 21  NARIAHLARAGNIEGARAAFEAMPLRTTASYNALLAGYFRNRLPDAALGLFRRMPSRDLA 80

Query: 152 SWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQV 211
           S+N +I G +              LRR ++     + A I                    
Sbjct: 81  SYNALISGLS--------------LRRQTLPDAAAALASI-------------------- 106

Query: 212 LVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESAS 271
               F  +VV  +S++  Y + G L+DA RLF +   R+ +++T ++ G    G +  A 
Sbjct: 107 ---PFPPSVVSFTSLLRGYVRHGLLADAIRLFQQMPERNHVSYTVLLGGLLDAGRVNEAR 163

Query: 272 KLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIV 331
           +LF+EMP+++ V+WT +++GY + G   +A  LF  M                       
Sbjct: 164 RLFDEMPDRDVVAWTAMLSGYCQAGRITEARALFDEMP---------------------- 201

Query: 332 SLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMI 391
                            + N +  +++I  Y++ G +N  R++F++   + N + W  M+
Sbjct: 202 -----------------KRNVVSWTAMISGYAQNGEVNLARKLFEVMPER-NEVSWTAML 243

Query: 392 SALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESM 445
               Q G+ E A  LF+ M    V         ++      G+V    T FE M
Sbjct: 244 VGYIQAGHVEDAAELFNAMPEHPVA----ACNAMMVGFGQRGMVDAAKTVFEKM 293



 Score = 72.4 bits (176), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 73/289 (25%), Positives = 120/289 (41%), Gaps = 44/289 (15%)

Query: 258 VSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRM--------- 308
           ++  A+ G++E A   F  MP +   S+  L+AGY RN L   AL LF RM         
Sbjct: 24  IAHLARAGNIEGARAAFEAMPLRTTASYNALLAGYFRNRLPDAALGLFRRMPSRDLASYN 83

Query: 309 -MILRIRPNQHTFSSCLCACASI---------VSLKHGKQVHGFL---IR-------TNF 348
            +I  +   + T      A ASI          SL  G   HG L   IR        N 
Sbjct: 84  ALISGLSLRRQTLPDAAAALASIPFPPSVVSFTSLLRGYVRHGLLADAIRLFQQMPERNH 143

Query: 349 RSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFH 408
            S T+++  L+D     G +N+ R++FD   ++ + + W  M+S   Q G   +A  LF 
Sbjct: 144 VSYTVLLGGLLD----AGRVNEARRLFDEMPDR-DVVAWTAMLSGYCQAGRITEARALFD 198

Query: 409 DMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQA 468
           +M + +V    ++   +++    +G V      FE M        N+     ++    QA
Sbjct: 199 EMPKRNV----VSWTAMISGYAQNGEVNLARKLFEVMPER-----NEVSWTAMLVGYIQA 249

Query: 469 GCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQN 517
           G  +        MP EH     NA+       G +D  + V +++ +++
Sbjct: 250 GHVEDAAELFNAMP-EHPVAACNAMMVGFGQRGMVDAAKTVFEKMCERD 297



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 42/145 (28%), Positives = 74/145 (51%), Gaps = 5/145 (3%)

Query: 33  LSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSN 92
           L EA+S+   +  RG+R    ++  IL  CA    L  G+ VH  + L        F  +
Sbjct: 314 LMEALSTFREMLWRGVRPNYPSVISILTVCAALAVLDYGREVHAAM-LRCSFDMDVFAVS 372

Query: 93  HLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNM----AER 148
            LI+MY KCG+   A++VF     K++  +N+M++GYA  G+ + A  +F +M       
Sbjct: 373 ALITMYIKCGNLDKAKRVFHTFEPKDIVMWNSMITGYAQHGLGEQALGIFHDMRLAGMSP 432

Query: 149 DVVSWNTMIIGYAKSGAVEEGLKFY 173
           D +++   +   + +G V+EG + +
Sbjct: 433 DGITYIGALTACSYTGKVKEGREIF 457


>gi|359475162|ref|XP_003631603.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g18840-like [Vitis vinifera]
          Length = 670

 Score =  317 bits (812), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 175/553 (31%), Positives = 304/553 (54%), Gaps = 6/553 (1%)

Query: 49  RLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDAR 108
           R+   +L  +L   A+      GK++H ++  T     + F  + LI MY KCG   +  
Sbjct: 120 RIDEFSLTRMLNLSAKLSMESYGKQLHSYMVKTANNI-SGFAVSSLIDMYSKCGCFREVC 178

Query: 109 KVFDKIP-VKNLFSYNNMLSGYANLGMMKHARNLF-DNMAERDVVSWNTMIIGYAKSGAV 166
           +VFD    V +L S N M++     G ++   NLF  ++   DVVSWNT+I GY ++G  
Sbjct: 179 QVFDGCAGVLDLVSKNAMVAACCREGELEMGVNLFWRDLELNDVVSWNTLISGYVQNGCE 238

Query: 167 EEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSI 226
           E+ LK +  +    +  NE + AG+L+ C  L  LKL ++VHG VL      N  ISS +
Sbjct: 239 EDALKLFVHMEENEVRWNEHTIAGLLSACAGLRSLKLGKEVHGWVLKYELGFNPFISSGL 298

Query: 227 VDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWT 286
           VD Y KCG +  A  ++      +  + T+M+ G++  G+M  A +LF+ + EK+ + WT
Sbjct: 299 VDVYCKCGNMKYAELVYATIGTGNAFSITSMIVGHSSQGNMGEARRLFDSLTEKSSIIWT 358

Query: 287 TLIAGYTRNGLGQKALELFTRMMILR-IRPNQHTFSSCLCACASIVSLKHGKQVHGFLIR 345
            L  GY ++   +   EL +   +   + P+     S L ACA   +L  GKQ+H +++R
Sbjct: 359 ALFTGYVKSQQCEAVFELLSEFRVKEAMVPDALILISVLGACAIQAALNPGKQIHAYVLR 418

Query: 346 TNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIR 405
                +  ++S+++DMYSK G +    ++F    N++ ++++N M +    HG++ QAI+
Sbjct: 419 IGIELDEKLVSAMVDMYSKSGNIKYAEKIFQRVTNRD-AVIYNIMTAGYAHHGHENQAIQ 477

Query: 406 LFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELL 465
            F +M+   V+PD +T   +L+AC H GLV+ G  YF SMT D  I+P  +H+AC+I+L 
Sbjct: 478 QFEEMLERGVRPDAVTFVALLSACRHCGLVELGEKYFASMT-DYNILPEIDHYACMIDLY 536

Query: 466 AQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHG 525
            +A   ++ +  ++++P E D+ +  A    CRI+ N  + R+  ++++     + A + 
Sbjct: 537 GRANQLEKAVAFMKRIPIEPDAVILGAFLNACRINRNTKLAREAEEKILRIEGDNGARYV 596

Query: 526 LLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYS 585
            L+++Y+A GK   + ++R+ + E + KK    SW+ +EN+VH F+  DS H   + +YS
Sbjct: 597 QLANVYAAEGKWVEMGRIRRKMRENEIKKFAGCSWVYVENRVHIFTSGDSSHSSAEAIYS 656

Query: 586 VLEQLAGQMGEDA 598
           +L  L  ++ + A
Sbjct: 657 ILLILTAELNDTA 669



 Score =  192 bits (489), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 141/527 (26%), Positives = 241/527 (45%), Gaps = 82/527 (15%)

Query: 66  KSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNM 125
           +S+K G R H H  +    T T F SN LI +Y K G   +A K+FD++P +N+F++N +
Sbjct: 2   RSIKDGFRFHAH-AIKNGITSTVFTSNQLIHLYSKHGFLAEAHKLFDEMPERNVFTWNAI 60

Query: 126 LSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVE-EGLKFYKVLRRFS--IS 182
           +  Y     +K AR LFD+   +D+V++N+M+ GY  +   E   LK +  ++  +    
Sbjct: 61  IWAYIKTQNLKQARELFDSAPSKDLVTYNSMLSGYINTDGYETNALKLFIEMQSLNDETR 120

Query: 183 CNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRL 242
            +EFS   +L +  KL      +Q+H  ++ T    +    SS++D Y+KCG   +  ++
Sbjct: 121 IDEFSLTRMLNLSAKLSMESYGKQLHSYMVKTANNISGFAVSSLIDMYSKCGCFREVCQV 180

Query: 243 FDE-TDARDVLTWTTMVSGYAKLGDMESASKLF-NEMPEKNPVSWTTLIAGYTRNGLGQK 300
           FD      D+++   MV+   + G++E    LF  ++   + VSW TLI+GY +NG  + 
Sbjct: 181 FDGCAGVLDLVSKNAMVAACCREGELEMGVNLFWRDLELNDVVSWNTLISGYVQNGCEED 240

Query: 301 ALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLID 360
           AL+LF  M    +R N+HT +  L ACA + SLK GK+VHG++++     N  + S L+D
Sbjct: 241 ALKLFVHMEENEVRWNEHTIAGLLSACAGLRSLKLGKEVHGWVLKYELGFNPFISSGLVD 300

Query: 361 MYSKC-------------------------------GCLNDGRQVFDLTDNKENSMLWNT 389
           +Y KC                               G + + R++FD    K +S++W  
Sbjct: 301 VYCKCGNMKYAELVYATIGTGNAFSITSMIVGHSSQGNMGEARRLFDSLTEK-SSIIWTA 359

Query: 390 MISALTQHGYDEQAIRLFHDM-VRSSVKPDKITLAVILNAC------------------- 429
           + +   +    E    L  +  V+ ++ PD + L  +L AC                   
Sbjct: 360 LFTGYVKSQQCEAVFELLSEFRVKEAMVPDALILISVLGACAIQAALNPGKQIHAYVLRI 419

Query: 430 ----------------THSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQ 473
                           + SG ++     F+ +T+   +I N      +    A  G  +Q
Sbjct: 420 GIELDEKLVSAMVDMYSKSGNIKYAEKIFQRVTNRDAVIYN-----IMTAGYAHHGHENQ 474

Query: 474 LMNQLEKM---PYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQN 517
            + Q E+M       D+  + AL   CR  G +++G K    + D N
Sbjct: 475 AIQQFEEMLERGVRPDAVTFVALLSACRHCGLVELGEKYFASMTDYN 521



 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 104/414 (25%), Positives = 168/414 (40%), Gaps = 73/414 (17%)

Query: 18  NCLIQSFLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVH-L 76
           N LI  +   +  G   +A+     + +  +R    T+A +L  CA  +SLKLGK VH  
Sbjct: 226 NTLISGY---VQNGCEEDALKLFVHMEENEVRWNEHTIAGLLSACAGLRSLKLGKEVHGW 282

Query: 77  HLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMK 136
            LK      P  F+S+ L+ +Y KCG+   A  V+  I   N FS  +M+ G+++ G M 
Sbjct: 283 VLKYELGFNP--FISSGLVDVYCKCGNMKYAELVYATIGTGNAFSITSMIVGHSSQGNMG 340

Query: 137 HARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLR-RFSISCNEFSFAGILTIC 195
            AR LFD++ E+  + W  +  GY KS   E   +     R + ++  +      +L  C
Sbjct: 341 EARRLFDSLTEKSSIIWTALFTGYVKSQQCEAVFELLSEFRVKEAMVPDALILISVLGAC 400

Query: 196 VKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWT 255
                L   +Q+H  VL  G   +  + S++VD Y+K G +  A ++F     RD + + 
Sbjct: 401 AIQAALNPGKQIHAYVLRIGIELDEKLVSAMVDMYSKSGNIKYAEKIFQRVTNRDAVIYN 460

Query: 256 TMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRP 315
            M +GYA  G    A + F EM E+                                +RP
Sbjct: 461 IMTAGYAHHGHENQAIQQFEEMLERG-------------------------------VRP 489

Query: 316 NQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVF 375
           +  TF + L AC     ++ G++    +   N        + +ID+Y +   L       
Sbjct: 490 DAVTFVALLSACRHCGLVELGEKYFASMTDYNILPEIDHYACMIDLYGRANQL------- 542

Query: 376 DLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNAC 429
                                    E+A+     M R  ++PD + L   LNAC
Sbjct: 543 -------------------------EKAVAF---MKRIPIEPDAVILGAFLNAC 568


>gi|449462338|ref|XP_004148898.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
           mitochondrial-like [Cucumis sativus]
          Length = 675

 Score =  317 bits (812), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 194/615 (31%), Positives = 325/615 (52%), Gaps = 51/615 (8%)

Query: 16  PNNCLIQSFLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVH 75
           P   ++QS  S+    Q+   I+   L+ Q     PA  L   L  CA S S   G   +
Sbjct: 54  PTLLILQSCSSMFQLKQIQAHITCTGLMNQI---FPASRL---LAFCALSDS---GDIHY 104

Query: 76  LHLKLTQRKTPTTFLSNHLISMY----------------------FKCGSDVDARKVFDK 113
            HL   Q + P  F  N +I  Y                      F  GS V A K   +
Sbjct: 105 AHLIFDQTELPNCFFWNTMIKGYCKANHPSMGFSFFRQMIRNRAEFDSGSFVFALKACGQ 164

Query: 114 IPVK-----------------NLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTM 156
              K                 +LF  N ++  Y   G +  AR +FD  + +DVV+W TM
Sbjct: 165 FAEKIVGMAVHSVIWKRGFDSDLFVQNGLIQNYVETGCLGFARQMFDESSVKDVVTWTTM 224

Query: 157 IIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGF 216
           I GYA++  ++E +  +  +    +  NE +   +L+ C +  + ++ + +H  +     
Sbjct: 225 INGYARNNWLDEAIALFNSMLSSDVKPNEVTMIALLSACSQKGDSEMGKTLHEHIRRKDI 284

Query: 217 LSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNE 276
             ++ + ++++D Y KCG L+ AR +F+  + RDV +WT++++GYAK GD+ SA KLF+E
Sbjct: 285 TCSLNLLNAMLDMYVKCGCLTTAREIFNNMERRDVFSWTSLLNGYAKNGDLGSARKLFDE 344

Query: 277 MPEKNPVSWTTLIAGYTRNGLGQKALELFTRMM-ILRIRPNQHTFSSCLCACASIVSLKH 335
           MPE+N VSW  +IAGY++N    +ALELF  M+ ++ + P + T    L A   +  L+ 
Sbjct: 345 MPERNIVSWNAMIAGYSQNSQPMEALELFHNMVDVVGLVPTEDTLVCVLSASGQLGCLEM 404

Query: 336 GKQVH-GFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISAL 394
           G+++H   + +   + + I+ ++++DMY+KCG ++   ++F     K N + WN+MISA 
Sbjct: 405 GQEIHCNHVNKIGIQVSLILKNAVMDMYAKCGSIDAAAKLFHSMPEK-NLVSWNSMISAY 463

Query: 395 TQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPN 454
             +G+ ++A+ LF  M+ S +KPD IT   +L+AC++ G V EG  +FESM +  G+ P 
Sbjct: 464 ASYGHAKKALTLFDQMIGSGLKPDHITFIGVLSACSYGGFVSEGQAHFESMENCFGVEPK 523

Query: 455 QEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLI 514
           +EH+AC+++LL++ G   +    + +MP E     W AL   CR HGN++M +   ++L+
Sbjct: 524 REHYACMVDLLSRVGLLKEAYELISRMPMEASEGGWGALLDACRKHGNVEMAKLAGEKLL 583

Query: 515 DQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSD 574
           + +P+ S  + LL++I +   K + V  VR+++ ER  KK    S IEIE K H F V+D
Sbjct: 584 ELDPEDSGIYSLLANICADGKKWKDVRMVRRMMRERGVKKVPGHSLIEIEGKFHEFLVAD 643

Query: 575 SLHPMRDVLYSVLEQ 589
           + H     +Y V+ +
Sbjct: 644 TSHTRSSEIYRVVNE 658



 Score =  149 bits (377), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 108/461 (23%), Positives = 210/461 (45%), Gaps = 49/461 (10%)

Query: 88  TFLSNHLISMYFKCGSDVDARKVFDKIPVKNL----FSYNNMLS--GYANLGMMKHARNL 141
            F+SN  + +   C S    +++   I    L    F  + +L+    ++ G + +A  +
Sbjct: 49  VFISNPTLLILQSCSSMFQLKQIQAHITCTGLMNQIFPASRLLAFCALSDSGDIHYAHLI 108

Query: 142 FDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEEL 201
           FD     +   WNTMI GY K+     G  F++ + R     +  SF   L  C +  E 
Sbjct: 109 FDQTELPNCFFWNTMIKGYCKANHPSMGFSFFRQMIRNRAEFDSGSFVFALKACGQFAEK 168

Query: 202 KLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGY 261
            +   VH  +   GF S++ + + ++  Y + G L  AR++FDE+  +DV+TWTTM++GY
Sbjct: 169 IVGMAVHSVIWKRGFDSDLFVQNGLIQNYVETGCLGFARQMFDESSVKDVVTWTTMINGY 228

Query: 262 AKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFS 321
           A                               RN    +A+ LF  M+   ++PN+ T  
Sbjct: 229 A-------------------------------RNNWLDEAIALFNSMLSSDVKPNEVTMI 257

Query: 322 SCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNK 381
           + L AC+     + GK +H  + R +   +  ++++++DMY KCGCL   R++F+  + +
Sbjct: 258 ALLSACSQKGDSEMGKTLHEHIRRKDITCSLNLLNAMLDMYVKCGCLTTAREIFNNME-R 316

Query: 382 ENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTY 441
            +   W ++++   ++G    A +LF +M   ++    ++   ++   + +    E L  
Sbjct: 317 RDVFSWTSLLNGYAKNGDLGSARKLFDEMPERNI----VSWNAMIAGYSQNSQPMEALEL 372

Query: 442 FESMTHDLGIIPNQEHHACLIELLAQAGCSDQLM----NQLEKMPYEHDSYLWNALHGVC 497
           F +M   +G++P ++   C++    Q GC +       N + K+  +    L NA+  + 
Sbjct: 373 FHNMVDVVGLVPTEDTLVCVLSASGQLGCLEMGQEIHCNHVNKIGIQVSLILKNAVMDMY 432

Query: 498 RIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGR 538
              G+ID   K+   + ++N  S  +   + S Y++ G  +
Sbjct: 433 AKCGSIDAAAKLFHSMPEKNLVSWNS---MISAYASYGHAK 470


>gi|413935435|gb|AFW69986.1| hypothetical protein ZEAMMB73_442164 [Zea mays]
          Length = 658

 Score =  317 bits (811), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 176/541 (32%), Positives = 276/541 (51%), Gaps = 60/541 (11%)

Query: 94  LISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSW 153
           L++ Y + G   +AR +FD++P +N+ S+N M+SGY   GM+  AR LFD M  RD VSW
Sbjct: 104 LLTGYARRGRVAEARDLFDRMPHRNVVSWNAMVSGYLRNGMVDRARELFDAMPARDDVSW 163

Query: 154 --------------------------------NTMIIGYAKSGAVEEGLKFYKVLRR--- 178
                                           N ++ GYA  G +++  + +  ++R   
Sbjct: 164 LMMVSGYMRRKRFREAREIFDRAPSPPPTSVCNALLSGYAGYGYLKDAEELFGRMQRPDR 223

Query: 179 --FSISCNEFSFAGILTICVKL-EELKLTRQVHGQVLVTGFLSN---------------- 219
             ++     ++ AG++ +  +L +E+     V    +V G+L N                
Sbjct: 224 VSWNAMITGYTRAGMMQVARRLFDEMPGKDTVSWTAIVRGYLQNGDVDAAWEVFQDMPDR 283

Query: 220 -VVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMP 278
            V+  ++++  +     L DA RLF +   RD+++W T++ GY + GDM+SA+  F  M 
Sbjct: 284 DVLAWNTMMGGFVVSDRLDDALRLFADMPDRDLVSWNTILQGYIQQGDMDSATTWFRSML 343

Query: 279 EKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQ 338
           EK+  SW T+I+GY   G    AL L + M     RP+Q T+S  +  CAS+ +L  G+ 
Sbjct: 344 EKDETSWNTVISGYKDEG----ALSLLSEMTRGGYRPDQATWSVVISVCASLAALGCGRM 399

Query: 339 VHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHG 398
           VH   I+T F  + +VMSSLI MYSKCG + +  QVFDL   ++ ++ WN MI+    HG
Sbjct: 400 VHICTIKTGFEHDALVMSSLISMYSKCGLITEASQVFDLIVQRD-TVTWNAMIATYAYHG 458

Query: 399 YDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHH 458
              +A+ LF  M +    PD  T   +L+AC H G + EG  YF SM  D  ++P  +H+
Sbjct: 459 LAAEALALFDRMTKDRFSPDHATFLSVLSACAHKGYLYEGCHYFRSMQQDWNLVPRSDHY 518

Query: 459 ACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNP 518
           +C+++LL ++G   Q  N   K+P       W  L   C  HG+I +G  V   ++   P
Sbjct: 519 SCMVDLLGRSGFVHQAYNFTRKIPSNLQINAWETLFSSCNAHGDIQLGELVAKNVLQSRP 578

Query: 519 QSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHP 578
                + LLS+IY+A G       VR L+ E+  KKE   SWIE++  V +FS +D+ HP
Sbjct: 579 SDGGMYTLLSNIYAAKGMWSSAATVRGLMKEQGLKKETGCSWIELKGDVVSFSSNDNAHP 638

Query: 579 M 579
           +
Sbjct: 639 L 639



 Score =  169 bits (428), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 126/460 (27%), Positives = 219/460 (47%), Gaps = 37/460 (8%)

Query: 89  FLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAER 148
           F  N ++S   + G   DAR VFD +P +N  S+  +L+GYA  G +  AR+LFD M  R
Sbjct: 68  FTWNCMVSGLARNGLLADARGVFDAMPSRNSVSWAALLTGYARRGRVAEARDLFDRMPHR 127

Query: 149 DVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVH 208
           +VVSWN M+ GY ++G V+   + +  +     + ++ S+  +++  ++ +  +  R++ 
Sbjct: 128 NVVSWNAMVSGYLRNGMVDRARELFDAM----PARDDVSWLMMVSGYMRRKRFREAREIF 183

Query: 209 GQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDME 268
            +       S   + ++++  YA  G L DA  LF      D ++W  M++GY + G M+
Sbjct: 184 DRAPSPPPTS---VCNALLSGYAGYGYLKDAEELFGRMQRPDRVSWNAMITGYTRAGMMQ 240

Query: 269 SASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACA 328
            A +LF+EMP K+ VSWT ++ GY +NG    A E+F  M      P++   +       
Sbjct: 241 VARRLFDEMPGKDTVSWTAIVRGYLQNGDVDAAWEVFQDM------PDRDVLAWNTMMGG 294

Query: 329 SIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVF-DLTDNKENSMLW 387
            +VS +    +  F    +   + +  ++++  Y + G ++     F  + +  E S  W
Sbjct: 295 FVVSDRLDDALRLFADMPD--RDLVSWNTILQGYIQQGDMDSATTWFRSMLEKDETS--W 350

Query: 388 NTMISALTQHGY-DEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMT 446
           NT+IS     GY DE A+ L  +M R   +PD+ T +V+++ C     +  G      M 
Sbjct: 351 NTVIS-----GYKDEGALSLLSEMTRGGYRPDQATWSVVISVCASLAALGCG-----RMV 400

Query: 447 HDLGIIPNQEHHA----CLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGN 502
           H   I    EH A     LI + ++ G   +  +Q+  +  + D+  WNA+      HG 
Sbjct: 401 HICTIKTGFEHDALVMSSLISMYSKCGLITE-ASQVFDLIVQRDTVTWNAMIATYAYHGL 459

Query: 503 IDMGRKVVDQLIDQNPQSSATHGLLSSIYSALG-KGRLVE 541
                 + D++     + S  H    S+ SA   KG L E
Sbjct: 460 AAEALALFDRMTKD--RFSPDHATFLSVLSACAHKGYLYE 497



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 74/301 (24%), Positives = 132/301 (43%), Gaps = 53/301 (17%)

Query: 219 NVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMP 278
           NV   + +V   A+ G L+DAR +FD   +R+ ++W  +++GYA+ G +  A  LF+ MP
Sbjct: 66  NVFTWNCMVSGLARNGLLADARGVFDAMPSRNSVSWAALLTGYARRGRVAEARDLFDRMP 125

Query: 279 EKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQ 338
            +N VSW  +++GY RNG+  +A ELF  M      P +   S  +              
Sbjct: 126 HRNVVSWNAMVSGYLRNGMVDRARELFDAM------PARDDVSWLM-------------M 166

Query: 339 VHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHG 398
           V G++ R  FR                    + R++FD   +   + + N ++S    +G
Sbjct: 167 VSGYMRRKRFR--------------------EAREIFDRAPSPPPTSVCNALLSGYAGYG 206

Query: 399 YDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQE-- 456
           Y + A  LF  M R    PD+++   ++   T +G++Q     F+ M       P ++  
Sbjct: 207 YLKDAEELFGRMQR----PDRVSWNAMITGYTRAGMMQVARRLFDEM-------PGKDTV 255

Query: 457 HHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQ 516
               ++    Q G  D      + MP + D   WN + G   +   +D   ++   + D+
Sbjct: 256 SWTAIVRGYLQNGDVDAAWEVFQDMP-DRDVLAWNTMMGGFVVSDRLDDALRLFADMPDR 314

Query: 517 N 517
           +
Sbjct: 315 D 315



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 45/160 (28%), Positives = 83/160 (51%), Gaps = 5/160 (3%)

Query: 23  SFLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQ 82
           S+ ++IS  +   A+S L  + + G R    T + ++  CA   +L  G+ VH+    T 
Sbjct: 349 SWNTVISGYKDEGALSLLSEMTRGGYRPDQATWSVVISVCASLAALGCGRMVHICTIKTG 408

Query: 83  RKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLF 142
            +     +S+ LISMY KCG   +A +VFD I  ++  ++N M++ YA  G+   A  LF
Sbjct: 409 FEHDALVMSS-LISMYSKCGLITEASQVFDLIVQRDTVTWNAMIATYAYHGLAAEALALF 467

Query: 143 DNMAER----DVVSWNTMIIGYAKSGAVEEGLKFYKVLRR 178
           D M +     D  ++ +++   A  G + EG  +++ +++
Sbjct: 468 DRMTKDRFSPDHATFLSVLSACAHKGYLYEGCHYFRSMQQ 507


>gi|225439588|ref|XP_002265522.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g08820-like [Vitis vinifera]
          Length = 686

 Score =  317 bits (811), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 179/580 (30%), Positives = 295/580 (50%), Gaps = 65/580 (11%)

Query: 16  PNNCLIQSFL-SLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRV 74
           PN  L  + +  L+S     +AI    L+   G      T  F+L+ CA    L+LG ++
Sbjct: 75  PNIFLWNTMIRGLVSNDCFDDAIEFYGLMRSEGFLPNNFTFPFVLKACARLLDLQLGVKI 134

Query: 75  HLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGM 134
           H                    ++  K G D D            +F   +++  YA  G 
Sbjct: 135 H--------------------TLVVKGGFDCD------------VFVKTSLVCLYAKCGY 162

Query: 135 MKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTI 194
           ++ A  +FD++ +++VVSW  +I GY   G   E +  ++ L   +++ + F+   +L+ 
Sbjct: 163 LEDAHKVFDDIPDKNVVSWTAIISGYIGVGKFREAIDMFRRLLEMNLAPDSFTIVRVLSA 222

Query: 195 CVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTW 254
           C +L +L     +H  ++  G + NV + +S+VD                          
Sbjct: 223 CTQLGDLNSGEWIHKCIMEMGMVRNVFVGTSLVDM------------------------- 257

Query: 255 TTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIR 314
                 YAK G+ME A  +F+ MPEK+ VSW  +I GY  NGL ++A++LF +M    ++
Sbjct: 258 ------YAKCGNMEKARSVFDGMPEKDIVSWGAMIQGYALNGLPKEAIDLFLQMQRENVK 311

Query: 315 PNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQV 374
           P+ +T    L ACA + +L+ G+ V G + R  F  N ++ ++LID+Y+KCG ++   +V
Sbjct: 312 PDCYTVVGVLSACARLGALELGEWVSGLVDRNEFLYNPVLGTALIDLYAKCGSMSRAWEV 371

Query: 375 FDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGL 434
           F     K+  ++WN +IS L  +GY + +  LF  + +  +KPD  T   +L  CTH+GL
Sbjct: 372 FKGMKEKDR-VVWNAIISGLAMNGYVKISFGLFGQVEKLGIKPDGNTFIGLLCGCTHAGL 430

Query: 435 VQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALH 494
           V EG  YF SM     + P+ EH+ C+++LL +AG  D+    +  MP E ++ +W AL 
Sbjct: 431 VDEGRRYFNSMYRFFSLTPSIEHYGCMVDLLGRAGLLDEAHQLIRNMPMEANAIVWGALL 490

Query: 495 GVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKK 554
           G CRIH +  +    + QLI+  P +S  + LLS+IYSA  K     KVR  +NE++ +K
Sbjct: 491 GACRIHRDTQLAELALKQLIELEPWNSGNYVLLSNIYSANLKWDEAAKVRLSMNEKRIQK 550

Query: 555 EQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQM 594
               SWIE++  VH F V D  HP+ + +Y+ L++L  +M
Sbjct: 551 PPGCSWIEVDGIVHEFLVGDKYHPLSEKIYAKLDELTKKM 590


>gi|225423995|ref|XP_002279343.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 623

 Score =  317 bits (811), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 192/602 (31%), Positives = 288/602 (47%), Gaps = 70/602 (11%)

Query: 57  FILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPV 116
           F+L++  +      GK     +     K P   L    IS+   C +     ++  +I +
Sbjct: 4   FLLKKDIKPFDPPGGKSCSTEIDYLAPKPPHRLLEERFISLLQSCKTSKQVHQIQAQI-I 62

Query: 117 KNLFSYNNMLSGY-----ANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLK 171
            N F YN  ++       A L  M +AR LFD + + ++  WN+M  GYA+S +  E + 
Sbjct: 63  ANGFQYNEYITPKLVTICATLKRMTYARQLFDQIPDPNIALWNSMFRGYAQSESYREVVF 122

Query: 172 FYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYA 231
            +  ++   I  N F+F  +L  C K+  L    QVH  ++  GF  N  + ++++D Y+
Sbjct: 123 LFFQMKGMDIRPNCFTFPVVLKSCGKINALIEGEQVHCFLIKCGFRGNPFVGTTLIDMYS 182

Query: 232 KCGELSDA-------------------------------RRLFDETDARDVLTWTTMVSG 260
             G + DA                               RRLFD    RDV+ W  MVSG
Sbjct: 183 AGGTVGDAYKIFCEMFERNVVAWTSMINGYILSADLVSARRLFDLAPERDVVLWNIMVSG 242

Query: 261 YAKLGDMESASKLFNEMP-------------------------------EKNPVSWTTLI 289
           Y + GDM  A KLF+EMP                               E+N  SW  LI
Sbjct: 243 YIEGGDMVEARKLFHEMPNRDVMFWNTVLKGYATNGNVEALEGLFEEMPERNIFSWNALI 302

Query: 290 AGYTRNGLGQKALELFTRMMILR-IRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNF 348
            GY  NGL  + L  F RM+    + PN  T  + L ACA + +L  GK VH +   +  
Sbjct: 303 GGYAHNGLFFEVLGSFKRMLSESDVPPNDATLVTVLSACARLGALDLGKWVHVYAESSGL 362

Query: 349 RSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFH 408
           + N  V ++L+DMY+KCG + +   VF   D K+  + WNT+I  L  H     A+ LF 
Sbjct: 363 KGNVYVGNALMDMYAKCGIIENAISVFRGMDTKD-LISWNTLIGGLAMHSRGADALNLFF 421

Query: 409 DMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQA 468
            M  +  KPD IT   IL ACTH GLV++G  YF+SM  D  I+P  EH+ C++++LA+A
Sbjct: 422 QMKNAGQKPDGITFIGILCACTHMGLVEDGFAYFQSMADDYLIMPQIEHYGCMVDMLARA 481

Query: 469 GCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLS 528
           G  +Q M  + KMP E D  +W  L G CRI+ N+++    + +LI+  P++ A + +LS
Sbjct: 482 GRLEQAMAFVRKMPVEADGVIWAGLLGACRIYKNVELAELALQRLIELEPKNPANYVMLS 541

Query: 529 SIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLE 588
           +IY   G+   V +++  + +  FKK    S IE+ + V  F   D  HP  + +Y VL 
Sbjct: 542 NIYGDAGRWEDVARLKVAMRDTGFKKLPGCSLIEVNDAVVEFYSLDERHPQIEEIYGVLR 601

Query: 589 QL 590
            L
Sbjct: 602 GL 603


>gi|449448280|ref|XP_004141894.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
           chloroplastic-like [Cucumis sativus]
 gi|449513125|ref|XP_004164238.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
           chloroplastic-like [Cucumis sativus]
          Length = 645

 Score =  317 bits (811), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 159/462 (34%), Positives = 266/462 (57%), Gaps = 5/462 (1%)

Query: 129 YANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSF 188
           YA LG +  +  +F+   E +V S++ +I  + +S   +    +Y  +    +  N F+F
Sbjct: 89  YAALGRLDCSVFVFNTFDEPNVFSFSAIIHSHVQSRLFDRAFGYYSQMLSCGVEPNAFTF 148

Query: 189 AGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDA 248
           + +L  C     L+  + +H Q +  G  S++ + + +VD YA+ G++  AR+LFD+   
Sbjct: 149 SSVLKSC----SLESGKVLHCQAIKLGLGSDLYVRTGLVDVYARGGDVVCARQLFDKMPE 204

Query: 249 RDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRM 308
           R +++ TTM++ Y+K+G+++ A  LF  M E++ V W  +I GY ++G+  ++L+LF RM
Sbjct: 205 RSLVSLTTMLTCYSKMGELDKARSLFEGMKERDVVCWNVMIGGYAQSGVPNESLKLFRRM 264

Query: 309 MILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCL 368
           ++ +  PN+ T  + L AC  + +L+ G+ +H ++     + N  V ++LIDMYSKCG L
Sbjct: 265 LVAKAIPNEVTVLAVLSACGQLGALESGRWIHSYIENKGIQINVHVGTALIDMYSKCGSL 324

Query: 369 NDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNA 428
            D R VFD   +K+  + WN+MI     HG+ + A++LF +M  +  KP  IT   IL+A
Sbjct: 325 EDARLVFDRIRDKD-VVAWNSMIVGYAMHGFSQHALQLFEEMTETGHKPTDITFIGILSA 383

Query: 429 CTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSY 488
           C H GLV+EG ++F  M    GI P  EH+ C++ LL +AG  ++    ++ M    D  
Sbjct: 384 CGHGGLVEEGRSFFRLMRDKYGIEPKIEHYGCMVNLLGRAGHLEEAYGLVKNMTIAADPV 443

Query: 489 LWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLIN 548
           LW  L G CR+H NI +G ++   L+DQ   +S T+ LLS++Y+A G    V K+R L+ 
Sbjct: 444 LWGTLLGCCRLHVNIKLGEEIAKFLVDQKLANSGTYVLLSNMYAATGNWEGVAKMRTLMK 503

Query: 549 ERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQL 590
           E   +KE   S IE++NKVH F   +  HP    +Y +L ++
Sbjct: 504 EHGIEKEHGCSSIEVDNKVHEFVAGERKHPKSKEIYVMLNEI 545



 Score =  155 bits (393), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 90/267 (33%), Positives = 145/267 (54%), Gaps = 11/267 (4%)

Query: 47  GIRLPAETLAFILQQCAESKSLKLGKRVHLH-LKLTQRKTPTTFLSNHLISMYFKCGSDV 105
           G+   A T + +L+ C    SL+ GK +H   +KL        ++   L+ +Y + G  V
Sbjct: 140 GVEPNAFTFSSVLKSC----SLESGKVLHCQAIKLGL--GSDLYVRTGLVDVYARGGDVV 193

Query: 106 DARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGA 165
            AR++FDK+P ++L S   ML+ Y+ +G +  AR+LF+ M ERDVV WN MI GYA+SG 
Sbjct: 194 CARQLFDKMPERSLVSLTTMLTCYSKMGELDKARSLFEGMKERDVVCWNVMIGGYAQSGV 253

Query: 166 VEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSS 225
             E LK ++ +       NE +   +L+ C +L  L+  R +H  +   G   NV + ++
Sbjct: 254 PNESLKLFRRMLVAKAIPNEVTVLAVLSACGQLGALESGRWIHSYIENKGIQINVHVGTA 313

Query: 226 IVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPE----KN 281
           ++D Y+KCG L DAR +FD    +DV+ W +M+ GYA  G  + A +LF EM E      
Sbjct: 314 LIDMYSKCGSLEDARLVFDRIRDKDVVAWNSMIVGYAMHGFSQHALQLFEEMTETGHKPT 373

Query: 282 PVSWTTLIAGYTRNGLGQKALELFTRM 308
            +++  +++     GL ++    F  M
Sbjct: 374 DITFIGILSACGHGGLVEEGRSFFRLM 400



 Score = 39.7 bits (91), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 39/155 (25%), Positives = 69/155 (44%), Gaps = 14/155 (9%)

Query: 332 SLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMI 391
           S+ H  Q+H  L+R     N I+   L   Y+  G L+    VF+  D + N   ++ +I
Sbjct: 59  SVAHLLQIHASLLRRGLYHNPILNFKLQRSYAALGRLDCSVFVFNTFD-EPNVFSFSAII 117

Query: 392 SALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACT-HSGLVQEGLTYFESMTHDLG 450
            +  Q    ++A   +  M+   V+P+  T + +L +C+  SG V             LG
Sbjct: 118 HSHVQSRLFDRAFGYYSQMLSCGVEPNAFTFSSVLKSCSLESGKV------LHCQAIKLG 171

Query: 451 IIPNQEHHACLIELLAQAG---CSDQLMNQLEKMP 482
           +  +      L+++ A+ G   C+ QL    +KMP
Sbjct: 172 LGSDLYVRTGLVDVYARGGDVVCARQL---FDKMP 203


>gi|449531466|ref|XP_004172707.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like, partial [Cucumis sativus]
          Length = 610

 Score =  317 bits (811), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 191/581 (32%), Positives = 289/581 (49%), Gaps = 70/581 (12%)

Query: 78  LKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYN-----NMLSGYANL 132
           L  + +K P   L  H IS+   C +    +KV  +I + + F YN     N+++ +  L
Sbjct: 12  LLYSAQKHPRWVLEEHFISLLRSCKTVALLQKVQAQI-ITHGFQYNGYVAPNVVTSWVGL 70

Query: 133 GMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGIL 192
             M HAR+LFD+  +  V  WN +  GY  +    E +  +  ++   +  N F+F  +L
Sbjct: 71  KQMAHARHLFDHFPDPKVELWNAISRGYFHNAFYREVVFLFGKMKSMDVRPNCFTFPLVL 130

Query: 193 TICVKLEELKLTRQVHGQV------------------------------LVTGFLS-NVV 221
             C K+       ++H +V                              L  G L  N+V
Sbjct: 131 KSCAKIGAFVEGEEIHCEVIKGGLEGNQFVATTLIDVYSGGRAIGSAYKLFVGMLERNIV 190

Query: 222 ISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFN------ 275
             +S++  Y  C  ++ ARRLFD    RDV+ W  MVSGY ++GDM++A KLF+      
Sbjct: 191 AWTSMISGYILCNRVALARRLFDLAPERDVVLWNIMVSGYIEIGDMKAARKLFDTMPYRD 250

Query: 276 -------------------------EMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMI 310
                                    EMPE+N  SW  LI GY  NG   + L  F RM+I
Sbjct: 251 TMSWNTMLNGYANNGDVEACEQLFEEMPERNVFSWNGLIGGYAHNGCFFEVLRCFKRMLI 310

Query: 311 -LRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLN 369
              + PN  T  + L ACA + +L  GK VH +     F+ +  V ++LIDMYSKCG + 
Sbjct: 311 DGLVVPNDATLVTVLSACARLGALDLGKWVHVYAATIGFKGSIYVGNALIDMYSKCGLIE 370

Query: 370 DGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNAC 429
           +  +VF+  D K+  + WN+MI  L  HG    A+ LFH M  +  KPD IT   +L +C
Sbjct: 371 NAMEVFESMDLKD-LITWNSMICGLATHGCGADALTLFHQMKINGEKPDGITFIGVLCSC 429

Query: 430 THSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYL 489
           TH GLV+EG +YF SM ++  I P  EH+ C+++L  +AG  D+ +  +++MP E D+ +
Sbjct: 430 THLGLVEEGTSYFNSMVNEYSIAPQIEHYGCMVDLFGRAGLLDRAIEFVKRMPMEADAVI 489

Query: 490 WNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINE 549
           W AL G CRI+ NID+    + +LI   P++ A + LLS+IY  LG+ + V +++ L+ +
Sbjct: 490 WAALLGACRIYKNIDLAELALQKLIVLEPKNPANYVLLSNIYGDLGRWKDVARLKILMRD 549

Query: 550 RQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQL 590
              KK    S IE+ + V  F   D  H     +Y VL+ L
Sbjct: 550 TGSKKLPGCSLIEVNDSVVEFYSLDERHSQSKEIYGVLKGL 590



 Score = 66.6 bits (161), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 49/164 (29%), Positives = 80/164 (48%), Gaps = 12/164 (7%)

Query: 31  GQLSEAISSLDLLAQRGIRLPAE-TLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTF 89
           G   E +     +   G+ +P + TL  +L  CA   +L LGK VH++      K  + +
Sbjct: 296 GCFFEVLRCFKRMLIDGLVVPNDATLVTVLSACARLGALDLGKWVHVYAATIGFKG-SIY 354

Query: 90  LSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMA--- 146
           + N LI MY KCG   +A +VF+ + +K+L ++N+M+ G A  G    A  LF  M    
Sbjct: 355 VGNALIDMYSKCGLIENAMEVFESMDLKDLITWNSMICGLATHGCGADALTLFHQMKING 414

Query: 147 -ERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFA 189
            + D +++  ++      G VEEG  +      F+   NE+S A
Sbjct: 415 EKPDGITFIGVLCSCTHLGLVEEGTSY------FNSMVNEYSIA 452


>gi|224065565|ref|XP_002301860.1| predicted protein [Populus trichocarpa]
 gi|222843586|gb|EEE81133.1| predicted protein [Populus trichocarpa]
          Length = 933

 Score =  317 bits (811), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 163/504 (32%), Positives = 276/504 (54%), Gaps = 33/504 (6%)

Query: 123 NNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSIS 182
           N  +S  +    M +A   +  M   +V  +N MI G+ +S    + L+ Y  + R ++S
Sbjct: 18  NQFISALSTFNRMDYAVLAYTQMEIPNVFVYNAMIKGFVQSYQPVQALELYVQMLRANVS 77

Query: 183 CNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRL 242
              ++F  ++  C  + +L+    VHG V   GF S+V + +S+VD Y+  G + ++ R+
Sbjct: 78  PTSYTFPSLIKACGLVSQLRFAEAVHGHVWRNGFDSHVFVQTSLVDFYSSMGRIEESVRV 137

Query: 243 FDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTR-------- 294
           FDE   RDV  WTTMVSG  ++GDM SA +LF+ MP++N  +W TLI GY R        
Sbjct: 138 FDEMPERDVFAWTTMVSGLVRVGDMSSAGRLFDMMPDRNLATWNTLIDGYARLREVDVAE 197

Query: 295 -----------------------NGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIV 331
                                  N   ++AL +F  M    I P++ T ++ + ACA + 
Sbjct: 198 LLFNQMPARDIISWTTMINCYSQNKRFREALGVFNEMAKHGISPDEVTMATVISACAHLG 257

Query: 332 SLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMI 391
           +L  GK++H ++++  F  +  + S+LIDMY+KCG L+    +F     ++N   WN++I
Sbjct: 258 ALDLGKEIHYYIMQHGFNLDVYIGSALIDMYAKCGSLDRSLLMF-FKLREKNLFCWNSVI 316

Query: 392 SALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGI 451
             L  HGY E+A+ +F  M R  +KP+ +T   +L+AC H+GL++EG   F SMT D  I
Sbjct: 317 EGLAVHGYAEEALAMFDKMEREKIKPNGVTFVSVLSACNHAGLIEEGRKRFASMTRDHSI 376

Query: 452 IPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVD 511
            P  EH+ C+++LL++AG  ++ +  +  M  E ++ +W AL   C++H N+++ +   +
Sbjct: 377 PPGVEHYGCMVDLLSKAGLLEEALQLIRTMKLEPNAVIWGALLSGCKLHRNLEIAQVAAN 436

Query: 512 QLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKE-QAISWIEIENKVHAF 570
           +L+   P +S  + LL ++ + + +     K+R  + E+  +K     SWIE+E++VH F
Sbjct: 437 KLMVLEPGNSGYYTLLVNMNAEVNRWGEAAKIRLTMKEQGVEKRCPGSSWIEMESQVHQF 496

Query: 571 SVSDSLHPMRDVLYSVLEQLAGQM 594
           + SD  H   D +YS+L +L GQM
Sbjct: 497 AASDKSHAASDEIYSLLAELDGQM 520



 Score = 68.6 bits (166), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 43/151 (28%), Positives = 78/151 (51%), Gaps = 5/151 (3%)

Query: 32  QLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLS 91
           +  EA+   + +A+ GI     T+A ++  CA   +L LGK +H ++ +        ++ 
Sbjct: 223 RFREALGVFNEMAKHGISPDEVTMATVISACAHLGALDLGKEIHYYI-MQHGFNLDVYIG 281

Query: 92  NHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDV- 150
           + LI MY KCGS   +  +F K+  KNLF +N+++ G A  G  + A  +FD M    + 
Sbjct: 282 SALIDMYAKCGSLDRSLLMFFKLREKNLFCWNSVIEGLAVHGYAEEALAMFDKMEREKIK 341

Query: 151 ---VSWNTMIIGYAKSGAVEEGLKFYKVLRR 178
              V++ +++     +G +EEG K +  + R
Sbjct: 342 PNGVTFVSVLSACNHAGLIEEGRKRFASMTR 372


>gi|224075493|ref|XP_002304652.1| predicted protein [Populus trichocarpa]
 gi|222842084|gb|EEE79631.1| predicted protein [Populus trichocarpa]
          Length = 820

 Score =  316 bits (810), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 181/559 (32%), Positives = 299/559 (53%), Gaps = 39/559 (6%)

Query: 32  QLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLS 91
           Q+ +AI   D+++  G+        ++  +C E +SLKL  R+ +        T  + L 
Sbjct: 201 QVFDAIEYKDMVSWTGM-----VACYVENECFE-ESLKLFSRMRIVGFKPNNFTFASVLK 254

Query: 92  NHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVV 151
             +    F  G  V     F    ++ LF    ++  Y   G +  A  +F+ M + DV+
Sbjct: 255 ACVGLEVFNVGKAVHG-CAFKTSYLEELFVGVELIDLYIKSGDVDDALQVFEEMPKDDVI 313

Query: 152 SWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQV 211
            W+ MI  YA+S   EE ++ +  +RR  +  N+F+ A +L  C  L +L+L  Q+H  V
Sbjct: 314 PWSFMIARYAQSEQSEEAIEMFCRMRRGLVLPNQFTLASLLQACASLVDLQLGNQIHCHV 373

Query: 212 LVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESAS 271
           +  G   NV +S++++D YAKCG                                ME++ 
Sbjct: 374 VKVGLDMNVFVSNALMDMYAKCGR-------------------------------MENSL 402

Query: 272 KLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIV 331
           +LF+E P    VSW T+I GY + G G+KAL LF  M+  +++  + T+SS L ACA I 
Sbjct: 403 QLFSESPNCTDVSWNTVIVGYVQAGNGEKALILFKDMLECQVQGTEVTYSSVLRACAGIA 462

Query: 332 SLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMI 391
           +L+ G Q+H   ++T +  NT+V ++LIDMY+KCG + D R VFD+   + + + WN MI
Sbjct: 463 ALEPGSQIHSLSVKTIYDKNTVVGNALIDMYAKCGNIKDARLVFDML-REHDQVSWNAMI 521

Query: 392 SALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGI 451
           S  + HG   +A++ F  M+ +  KPDK+T   IL+AC+++GL+  G  YF+SM  +  I
Sbjct: 522 SGYSVHGLYGEALKTFESMLETECKPDKVTFVGILSACSNAGLLDRGQAYFKSMVEEYDI 581

Query: 452 IPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVD 511
            P  EH+ C++ LL ++G  D+    + ++P+E    +W AL   C IH ++++GR    
Sbjct: 582 EPCAEHYTCMVWLLGRSGHLDKAAKLVHEIPFEPSVMVWRALLSACVIHNDVELGRISAQ 641

Query: 512 QLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFS 571
           ++++  P+  ATH LLS+IY+   +   V  +R  +  +  +KE  +SWIE + +VH FS
Sbjct: 642 RVLEIEPEDEATHVLLSNIYANARRWGNVASIRTSMKRKGIRKEPGLSWIENQGRVHYFS 701

Query: 572 VSDSLHPMRDVLYSVLEQL 590
           V D+ HP   ++  +LE L
Sbjct: 702 VGDTSHPDTKLINGMLEWL 720



 Score =  191 bits (485), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 142/521 (27%), Positives = 235/521 (45%), Gaps = 80/521 (15%)

Query: 23  SFLSLISKG----QLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHL 78
           SF++LI       + SEAI     L   G  L     + +L+    ++  KLG  VH   
Sbjct: 112 SFVTLIQGYSQCLRFSEAIGLFSRLQGEGHELNPFVFSTVLKLLVSAEWAKLGFSVH--- 168

Query: 79  KLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHA 138
                            +  +K G D DA            F    ++  Y+  G  + A
Sbjct: 169 -----------------ACVYKLGFDSDA------------FVGTALIDCYSVCGYAECA 199

Query: 139 RNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKL 198
           R +FD +  +D+VSW  M+  Y ++   EE LK +  +R      N F+FA +L  CV L
Sbjct: 200 RQVFDAIEYKDMVSWTGMVACYVENECFEESLKLFSRMRIVGFKPNNFTFASVLKACVGL 259

Query: 199 EELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMV 258
           E   + + VHG    T +L  + +   ++D Y K G++ DA ++F+E    DV+ W+ M+
Sbjct: 260 EVFNVGKAVHGCAFKTSYLEELFVGVELIDLYIKSGDVDDALQVFEEMPKDDVIPWSFMI 319

Query: 259 SGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQH 318
           + YA+           +E  E                    +A+E+F RM    + PNQ 
Sbjct: 320 ARYAQ-----------SEQSE--------------------EAIEMFCRMRRGLVLPNQF 348

Query: 319 TFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLT 378
           T +S L ACAS+V L+ G Q+H  +++     N  V ++L+DMY+KCG + +  Q+F  +
Sbjct: 349 TLASLLQACASLVDLQLGNQIHCHVVKVGLDMNVFVSNALMDMYAKCGRMENSLQLFSES 408

Query: 379 DNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEG 438
            N  + + WNT+I    Q G  E+A+ LF DM+   V+  ++T + +L AC     ++ G
Sbjct: 409 PNCTD-VSWNTVIVGYVQAGNGEKALILFKDMLECQVQGTEVTYSSVLRACAGIAALEPG 467

Query: 439 LTYFESMTHDLGIIPNQEHHA----CLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALH 494
                S  H L +    + +      LI++ A+ G + +    +  M  EHD   WNA+ 
Sbjct: 468 -----SQIHSLSVKTIYDKNTVVGNALIDMYAKCG-NIKDARLVFDMLREHDQVSWNAMI 521

Query: 495 GVCRIHGNIDMGRKVVDQLIDQ--NPQSSATHGLLSSIYSA 533
               +HG      K  + +++    P      G+LS+  +A
Sbjct: 522 SGYSVHGLYGEALKTFESMLETECKPDKVTFVGILSACSNA 562



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 73/304 (24%), Positives = 131/304 (43%), Gaps = 43/304 (14%)

Query: 184 NEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLF 243
           N + +  +L  C++  +    + +H +++  G   ++  ++ +++ Y K   L DA +LF
Sbjct: 43  NTYIYGSLLQSCIRNGDCATGKYLHCEIIKKGNCLDLFANNILLNFYVKYDSLPDAAKLF 102

Query: 244 DETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALE 303
           DE   R+ +++ T++ GY++      A  LF+ +                  G G +   
Sbjct: 103 DEMPDRNTVSFVTLIQGYSQCLRFSEAIGLFSRL-----------------QGEGHEL-- 143

Query: 304 LFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYS 363
                       N   FS+ L    S    K G  VH  + +  F S+  V ++LID YS
Sbjct: 144 ------------NPFVFSTVLKLLVSAEWAKLGFSVHACVYKLGFDSDAFVGTALIDCYS 191

Query: 364 KCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLA 423
            CG     RQVFD  + K+  + W  M++   ++   E++++LF  M     KP+  T A
Sbjct: 192 VCGYAECARQVFDAIEYKD-MVSWTGMVACYVENECFEESLKLFSRMRIVGFKPNNFTFA 250

Query: 424 VILNACT-----HSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQL 478
            +L AC      + G    G  +  S   +L +         LI+L  ++G  D  +   
Sbjct: 251 SVLKACVGLEVFNVGKAVHGCAFKTSYLEELFVGVE------LIDLYIKSGDVDDALQVF 304

Query: 479 EKMP 482
           E+MP
Sbjct: 305 EEMP 308


>gi|328774749|gb|AEB39774.1| pentatricopeptide repeat protein 65 [Funaria hygrometrica]
          Length = 771

 Score =  316 bits (809), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 172/596 (28%), Positives = 301/596 (50%), Gaps = 78/596 (13%)

Query: 9   GINRKNLPN-NCLIQSFLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKS 67
           GI  +N+ +   +I++F   ++  Q  EA    + +   G +    T   +L      + 
Sbjct: 156 GIRDRNIVSWTAMIEAF---VAGNQNLEAYKCYETMKLAGCKPDKVTFVSLLNAFTNPEL 212

Query: 68  LKLGKRVHLH-----LKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSY 122
           L++G++VH+      L+L  R      +   L+ MY KCG                    
Sbjct: 213 LQVGQKVHMEIAKAGLELEPR------VGTSLVGMYAKCGD------------------- 247

Query: 123 NNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSIS 182
                       +  A+ +FD + E++VV+W  +I GYA+ G V+  L+  + +++  ++
Sbjct: 248 ------------ISKAQVIFDKLPEKNVVTWTLLIAGYAQQGQVDVALELLEKMQQAEVA 295

Query: 183 CNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRL 242
            N+ ++  IL  C     L+  ++VH  ++ +G+   + + ++++  Y KC         
Sbjct: 296 PNKITYTSILQGCTTPLALEHGKKVHRYIIQSGYGREIWVVNALITMYCKC--------- 346

Query: 243 FDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKAL 302
                                 G ++ A KLF ++P ++ V+WT ++ GY + G   +A+
Sbjct: 347 ----------------------GGLKEARKLFGDLPHRDVVTWTAMVTGYAQLGFHDEAI 384

Query: 303 ELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMY 362
           +LF RM    I+P++ TF+S L +C+S   L+ GK +H  L+   +  +  + S+L+ MY
Sbjct: 385 DLFRRMQQQGIKPDKMTFTSALTSCSSPAFLQEGKSIHQQLVHAGYSLDVYLQSALVSMY 444

Query: 363 SKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITL 422
           +KCG ++D R VF+    + N + W  MI+   QHG   +A+  F  M +  +KPDK+T 
Sbjct: 445 AKCGSMDDARLVFNQMSER-NVVAWTAMITGCAQHGRCREALEYFEQMKKQGIKPDKVTF 503

Query: 423 AVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMP 482
             +L+ACTH GLV+EG  +F SM  D GI P  EH++C ++LL +AG  ++  N +  MP
Sbjct: 504 TSVLSACTHVGLVEEGRKHFRSMYLDYGIKPMVEHYSCFVDLLGRAGHLEEAENVILTMP 563

Query: 483 YEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEK 542
           ++    +W AL   CRIH +++ G +  + ++  +P     +  LS+IY+A G+    EK
Sbjct: 564 FQPGPSVWGALLSACRIHSDVERGERAAENVLKLDPDDDGAYVALSNIYAAAGRYEDAEK 623

Query: 543 VRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQMGEDA 598
           VRQ++ +R   KE   SWIE++ KVH F V D  HP    +Y+ L +L  Q+ E  
Sbjct: 624 VRQVMEKRDVVKEPGQSWIEVDGKVHVFHVEDKSHPEAKEIYAELGKLTEQIKEQG 679



 Score =  215 bits (547), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 142/522 (27%), Positives = 245/522 (46%), Gaps = 74/522 (14%)

Query: 27  LISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTP 86
           L  +G+L EA+  L+ +  +G R+ ++    +LQ+CA  +SL+ G+ VH  + L     P
Sbjct: 71  LCKQGRLKEALGILNTMILQGTRVYSDVFRGLLQECARLRSLEQGREVHAAI-LKSGIQP 129

Query: 87  TTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMA 146
             +L N L+SMY                               A  G +  AR +FD + 
Sbjct: 130 NRYLENTLLSMY-------------------------------AKCGSLTDARRVFDGIR 158

Query: 147 ERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQ 206
           +R++VSW  MI  +       E  K Y+ ++      ++ +F  +L      E L++ ++
Sbjct: 159 DRNIVSWTAMIEAFVAGNQNLEAYKCYETMKLAGCKPDKVTFVSLLNAFTNPELLQVGQK 218

Query: 207 VHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGD 266
           VH ++   G                             E + R     T++V  YAK GD
Sbjct: 219 VHMEIAKAGL----------------------------ELEPR---VGTSLVGMYAKCGD 247

Query: 267 MESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCA 326
           +  A  +F+++PEKN V+WT LIAGY + G    ALEL  +M    + PN+ T++S L  
Sbjct: 248 ISKAQVIFDKLPEKNVVTWTLLIAGYAQQGQVDVALELLEKMQQAEVAPNKITYTSILQG 307

Query: 327 CASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSML 386
           C + ++L+HGK+VH ++I++ +     V+++LI MY KCG L + R++F    ++ + + 
Sbjct: 308 CTTPLALEHGKKVHRYIIQSGYGREIWVVNALITMYCKCGGLKEARKLFGDLPHR-DVVT 366

Query: 387 WNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMT 446
           W  M++   Q G+ ++AI LF  M +  +KPDK+T    L +C+    +QEG +  + + 
Sbjct: 367 WTAMVTGYAQLGFHDEAIDLFRRMQQQGIKPDKMTFTSALTSCSSPAFLQEGKSIHQQLV 426

Query: 447 HDLGIIPNQEHHACLIELLAQAGCSDQ---LMNQLEKMPYEHDSYLWNALHGVCRIHGNI 503
           H  G   +    + L+ + A+ G  D    + NQ+     E +   W A+   C  HG  
Sbjct: 427 H-AGYSLDVYLQSALVSMYAKCGSMDDARLVFNQMS----ERNVVAWTAMITGCAQHGRC 481

Query: 504 DMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQ 545
               +  +Q+  Q  +        +S+ SA     LVE+ R+
Sbjct: 482 REALEYFEQMKKQGIKPDKV--TFTSVLSACTHVGLVEEGRK 521


>gi|195651407|gb|ACG45171.1| CRR4 [Zea mays]
          Length = 601

 Score =  316 bits (809), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 182/589 (30%), Positives = 303/589 (51%), Gaps = 42/589 (7%)

Query: 16  PNNCLIQSFLSLISKGQL-SEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRV 74
           P   L  +F+S++SK  L  E I ++  L +RG  +P+  +  +L+ CA S +   G + 
Sbjct: 41  PTAALCCAFVSVLSKLSLHQELIEAVSSLHRRGGAIPSGCIPLVLKSCALSAASCQGTQT 100

Query: 75  HLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGM 134
           H H  L +      F+   L+  Y K G+   A   F+++P+K+    N ++ GY+  G 
Sbjct: 101 HCH-ALVRGMLGDVFVQTALVDFYAKNGNMDSAVMAFEEMPIKDPIPMNCLIIGYSRSGD 159

Query: 135 MKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTI 194
           ++ AR LFD+M  +   SWN+MI  YA  G  +E L  +  + R   S N  +   + +I
Sbjct: 160 VEEARRLFDSMPRKTSASWNSMIACYAHGGEFQEALTLFDQMLREGASPNAITITTVFSI 219

Query: 195 CVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARR---LFDETDARDV 251
           C                                   AK G+L   RR      E D ++V
Sbjct: 220 C-----------------------------------AKTGDLETGRRAKAWVSEEDLQNV 244

Query: 252 LTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMIL 311
           +  T ++  Y K   ++ A + F+ MP ++ V+W+T+IAGY+ NG   ++LELF RM   
Sbjct: 245 IVHTALMEMYVKCRAIDEARREFDRMPRRDVVAWSTMIAGYSHNGRPHESLELFERMKAT 304

Query: 312 RIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDG 371
             +PN+ T    L ACA + S + G+Q+  ++        + + S+LIDMY+KCG +   
Sbjct: 305 NCKPNEVTLVGVLSACAQLGSDELGEQIGSYIESQTLPLTSYLGSALIDMYTKCGHVARA 364

Query: 372 RQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTH 431
           R VF   + K   + WN+MI  L  +G+ E AI L+ +MV   V+P++IT   +L ACTH
Sbjct: 365 RDVFHRMEQK-VVIAWNSMIRGLALNGFAEDAIALYGEMVGDGVQPNEITFLALLTACTH 423

Query: 432 SGLVQEGLTYFESMTHDLG-IIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLW 490
           +GLV +G+ +F+ M  +     P  EH AC+++LL ++G   +    +  M  E ++ +W
Sbjct: 424 AGLVDKGMAFFQEMKKNKQHASPQVEHCACIVDLLCKSGRLWEAYKFICDMEVEPNAVIW 483

Query: 491 NALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINER 550
             L   CR H ++++ +    +L+   P SS+ + LLS+IY+  G    V ++R L+  +
Sbjct: 484 TTLLSACRAHADVELAKLAAGKLVVLEPNSSSIYVLLSNIYADAGLWGDVREIRDLMRSK 543

Query: 551 QFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQMGEDAP 599
             +K  A SWIE++ +VH F V D+ HP    +Y+V++ L  Q+   +P
Sbjct: 544 NLQKLSAYSWIELDGEVHRFLVQDTYHPRSAEIYNVVDGLGLQLERTSP 592



 Score = 59.3 bits (142), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 65/319 (20%), Positives = 125/319 (39%), Gaps = 46/319 (14%)

Query: 269 SASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSC----L 324
           +A  LF+ +P          ++  ++  L Q+ +E  + +     R      S C    L
Sbjct: 30  AARHLFDAVPRPTAALCCAFVSVLSKLSLHQELIEAVSSLH----RRGGAIPSGCIPLVL 85

Query: 325 CACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCG------------------ 366
            +CA   +   G Q H   +      +  V ++L+D Y+K G                  
Sbjct: 86  KSCALSAASCQGTQTHCHALVRGMLGDVFVQTALVDFYAKNGNMDSAVMAFEEMPIKDPI 145

Query: 367 ---CL----------NDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRS 413
              CL           + R++FD    K  S  WN+MI+     G  ++A+ LF  M+R 
Sbjct: 146 PMNCLIIGYSRSGDVEEARRLFDSMPRK-TSASWNSMIACYAHGGEFQEALTLFDQMLRE 204

Query: 414 SVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQ 473
              P+ IT+  + + C  +G ++ G      ++ +   + N   H  L+E+  +    D+
Sbjct: 205 GASPNAITITTVFSICAKTGDLETGRRAKAWVSEE--DLQNVIVHTALMEMYVKCRAIDE 262

Query: 474 LMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQN--PQSSATHGLLSSIY 531
              + ++MP   D   W+ +      +G      ++ +++   N  P      G+LS+  
Sbjct: 263 ARREFDRMP-RRDVVAWSTMIAGYSHNGRPHESLELFERMKATNCKPNEVTLVGVLSAC- 320

Query: 532 SALGKGRLVEKVRQLINER 550
           + LG   L E++   I  +
Sbjct: 321 AQLGSDELGEQIGSYIESQ 339


>gi|359481919|ref|XP_003632692.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g13770, mitochondrial-like [Vitis vinifera]
          Length = 1053

 Score =  316 bits (809), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 174/573 (30%), Positives = 302/573 (52%), Gaps = 69/573 (12%)

Query: 26  SLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKT 85
           +L S  QL EA+  + +   +G+ +  +    +L +C    +++ G+RVH H+  T  + 
Sbjct: 454 TLCSNRQLKEALLEMGI---QGLEVEFQGYDSVLTECISQTAIREGQRVHAHMIKTCYEP 510

Query: 86  PTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNM 145
           P  +L   LI +Y KC    DAR+V D++P                              
Sbjct: 511 PV-YLRTRLIVLYNKCRCLGDARRVLDEMP------------------------------ 539

Query: 146 AERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTR 205
            ER+VVSW  MI GY++ G   E L  +  +     + NEF+FA +LT C      +L R
Sbjct: 540 -ERNVVSWTAMISGYSQRGYASEALHLFVEMLMSGTAPNEFTFATVLTSCTSSSGFQLGR 598

Query: 206 QVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLG 265
           Q+H  V+ T F S++ + SS++D YAK G++ +                           
Sbjct: 599 QIHSLVIKTSFESHIFVGSSLLDMYAKAGKICE--------------------------- 631

Query: 266 DMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLC 325
               A ++F+ +PE++ VS T +I+GY + GL ++AL+LF R+    +R N  T++S L 
Sbjct: 632 ----ARRVFDGLPERDVVSCTAIISGYAQLGLDEEALDLFRRLQREGMRSNYVTYASVLT 687

Query: 326 ACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSM 385
           A + + +L HG+QVH  ++R       ++ +SLIDMYSKCG L   R++FD    +   +
Sbjct: 688 ALSGLAALDHGRQVHSHVLRAKLPFYVVLQNSLIDMYSKCGSLTYSRRIFDSMPER-TVI 746

Query: 386 LWNTMISALTQHGYDEQAIRLFHDMVRSS-VKPDKITLAVILNACTHSGLVQEGL-TYFE 443
            WN M+   ++HG   +A+ LF  M   + VKPD +T   +L+ C+H G+   GL  ++E
Sbjct: 747 SWNAMLVGYSKHGLGREAVELFKLMKEENKVKPDSVTFLAVLSGCSHGGMEDRGLEIFYE 806

Query: 444 SMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNI 503
            +    G  P  EH+ C+++L  +AG  ++    ++KMP+E  + +W +L G CR+H N+
Sbjct: 807 MVNQKDGFEPEIEHYGCVVDLFGRAGRVEEAFEFIKKMPFEPTAAIWGSLLGACRVHQNV 866

Query: 504 DMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEI 563
            +G  V  +L++   +++  + +LS++Y++ G+   V  VR+L+ E+   KE   SWIE+
Sbjct: 867 HIGEFVARRLLEIESENAGNYVILSNLYASAGRWDDVRTVRELMKEKAVIKEPGRSWIEL 926

Query: 564 ENKVHAFSVSDSLHPMRDVLYSVLEQLAGQMGE 596
           +  +H F  SD  HP ++ +++ + +L+ ++ E
Sbjct: 927 DQTLHTFHASDRSHPRKEEVFAKVRELSIKIKE 959


>gi|356502930|ref|XP_003520267.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Glycine max]
          Length = 780

 Score =  316 bits (809), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 156/475 (32%), Positives = 271/475 (57%), Gaps = 2/475 (0%)

Query: 118 NLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLR 177
           +LF  N++++ Y + G    A  +F NM  +DVVSWN MI  +A  G  ++ L  ++ + 
Sbjct: 207 DLFILNSLINFYGSSGAPDLAHRVFTNMPGKDVVSWNAMINAFALGGLPDKALLLFQEME 266

Query: 178 RFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELS 237
              +  N  +   +L+ C K  +L+  R +   +   GF  +++++++++D Y KCG ++
Sbjct: 267 MKDVKPNVITMVSVLSACAKKIDLEFGRWICSYIENNGFTEHLILNNAMLDMYVKCGCIN 326

Query: 238 DARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGL 297
           DA+ LF++   +D+++WTTM+ G+AKLG+ + A  +F+ MP K   +W  LI+ Y +NG 
Sbjct: 327 DAKDLFNKMSEKDIVSWTTMLDGHAKLGNYDEAHCIFDAMPHKWTAAWNALISAYEQNGK 386

Query: 298 GQKALELFTRMMILR-IRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMS 356
            + AL LF  M + +  +P++ T    LCA A + ++  G  +H ++ + +   N  + +
Sbjct: 387 PRVALSLFHEMQLSKDAKPDEVTLICALCASAQLGAIDFGHWIHVYIKKHDINLNCHLAT 446

Query: 357 SLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVK 416
           SL+DMY+KCG LN   +VF   + K+   +W+ MI AL  +G  + A+ LF  M+ + +K
Sbjct: 447 SLLDMYAKCGNLNKAMEVFHAVERKD-VYVWSAMIGALAMYGQGKAALDLFSSMLEAYIK 505

Query: 417 PDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMN 476
           P+ +T   IL AC H+GLV EG   FE M    GI+P  +H+ C++++  +AG  ++  +
Sbjct: 506 PNAVTFTNILCACNHAGLVNEGEQLFEQMEPLYGIVPQIQHYVCVVDIFGRAGLLEKAAS 565

Query: 477 QLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGK 536
            +EKMP    + +W AL G C  HGN+++       L++  P +     LLS+IY+  G 
Sbjct: 566 FIEKMPIPPTAAVWGALLGACSRHGNVELAELAYQNLLELEPCNHGAFVLLSNIYAKAGD 625

Query: 537 GRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLA 591
              V  +R+L+ +   KKE   S I++   VH F V D+ HP    +YS L++++
Sbjct: 626 WEKVSNLRKLMRDSDVKKEPWCSSIDVNGIVHEFLVGDNSHPFSQKIYSKLDEIS 680



 Score =  152 bits (384), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 118/471 (25%), Positives = 211/471 (44%), Gaps = 79/471 (16%)

Query: 120 FSYNNMLSGYA--NLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSG-AVEEGLKFYKVL 176
           ++ + +L+ YA  +   + +A+N+F+ + + ++  WNT+I GYA S    +  L F  +L
Sbjct: 105 YTASKLLTAYAISSCSCLIYAKNVFNQIPQPNLYCWNTLIRGYASSSDPTQSFLIFLHML 164

Query: 177 RRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGEL 236
              S   N+F+F  +     +L+ L L   +HG V+     S++ I +S+++ Y   G  
Sbjct: 165 HSCSEFPNKFTFPFLFKAASRLKVLHLGSVLHGMVIKASLSSDLFILNSLINFYGSSGAP 224

Query: 237 SDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNG 296
             A R+F     +DV++W  M++ +A LG                              G
Sbjct: 225 DLAHRVFTNMPGKDVVSWNAMINAFA-LG------------------------------G 253

Query: 297 LGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMS 356
           L  KAL LF  M +  ++PN  T  S L ACA  + L+ G+ +  ++    F  + I+ +
Sbjct: 254 LPDKALLLFQEMEMKDVKPNVITMVSVLSACAKKIDLEFGRWICSYIENNGFTEHLILNN 313

Query: 357 SLIDMYSKCGCLNDGRQVFDLTDNKE----NSML-------------------------- 386
           +++DMY KCGC+ND + +F+    K+     +ML                          
Sbjct: 314 AMLDMYVKCGCINDAKDLFNKMSEKDIVSWTTMLDGHAKLGNYDEAHCIFDAMPHKWTAA 373

Query: 387 WNTMISALTQHGYDEQAIRLFHDM-VRSSVKPDKITLAVILNACTHSGLVQEG-LTYFES 444
           WN +ISA  Q+G    A+ LFH+M +    KPD++TL   L A    G +  G   +   
Sbjct: 374 WNALISAYEQNGKPRVALSLFHEMQLSKDAKPDEVTLICALCASAQLGAIDFGHWIHVYI 433

Query: 445 MTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGN-- 502
             HD+ +  N      L+++ A+ G  ++ M     +    D Y+W+A+ G   ++G   
Sbjct: 434 KKHDINL--NCHLATSLLDMYAKCGNLNKAMEVFHAVE-RKDVYVWSAMIGALAMYGQGK 490

Query: 503 --IDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQ 551
             +D+   +++  I  N  +       ++I  A     LV +  QL  + +
Sbjct: 491 AALDLFSSMLEAYIKPNAVT------FTNILCACNHAGLVNEGEQLFEQME 535



 Score =  119 bits (297), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 88/388 (22%), Positives = 163/388 (42%), Gaps = 55/388 (14%)

Query: 54  TLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDK 113
           T+  +L  CA+   L+ G+ +  +++     T    L+N ++ MY KCG   DA+ +F+K
Sbjct: 276 TMVSVLSACAKKIDLEFGRWICSYIE-NNGFTEHLILNNAMLDMYVKCGCINDAKDLFNK 334

Query: 114 IPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLK-F 172
           +  K++ S+  ML G+A LG    A  +FD M  +   +WN +I  Y ++G     L  F
Sbjct: 335 MSEKDIVSWTTMLDGHAKLGNYDEAHCIFDAMPHKWTAAWNALISAYEQNGKPRVALSLF 394

Query: 173 YKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAK 232
           +++        +E +    L    +L  +     +H  +       N  +++S++D YAK
Sbjct: 395 HEMQLSKDAKPDEVTLICALCASAQLGAIDFGHWIHVYIKKHDINLNCHLATSLLDMYAK 454

Query: 233 CGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPE----KNPVSWTTL 288
           CG L+ A  +F   + +DV  W+ M+   A  G  ++A  LF+ M E     N V++T +
Sbjct: 455 CGNLNKAMEVFHAVERKDVYVWSAMIGALAMYGQGKAALDLFSSMLEAYIKPNAVTFTNI 514

Query: 289 IAGYTRNGLGQKALELFTRMMILR-IRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTN 347
           +      GL  +  +LF +M  L  I P                      Q+  ++    
Sbjct: 515 LCACNHAGLVNEGEQLFEQMEPLYGIVP----------------------QIQHYV---- 548

Query: 348 FRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLF 407
                     ++D++ + G L       +       + +W  ++ A ++HG  E A   +
Sbjct: 549 ---------CVVDIFGRAGLLEKAASFIEKMPIPPTAAVWGALLGACSRHGNVELAELAY 599

Query: 408 HDMVRSSVKPDKITLAVILNACTHSGLV 435
            +++              L  C H   V
Sbjct: 600 QNLLE-------------LEPCNHGAFV 614



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 99/392 (25%), Positives = 178/392 (45%), Gaps = 31/392 (7%)

Query: 181 ISCNEFSFAGILTICVKLEELKLTRQVHGQVL------VTGFLSNVVISSSIVDAYAKCG 234
            SC+  S + +L + VK   L     + GQ+       V G   N V S++I++   +C 
Sbjct: 25  FSCSSTSNSTLLRVSVKCSALSTPLSL-GQIAMNCTEAVKGEKGNEVESTNILEFIDQCT 83

Query: 235 ELSDARR----LFDETDARDVLTWTTMVSGYA--KLGDMESASKLFNEMPEKNPVSWTTL 288
                ++    +   +   D  T + +++ YA      +  A  +FN++P+ N   W TL
Sbjct: 84  NTMQLKQIHAHMLRTSRFCDPYTASKLLTAYAISSCSCLIYAKNVFNQIPQPNLYCWNTL 143

Query: 289 IAGYTRNGLGQKALELFTRMM-ILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTN 347
           I GY  +    ++  +F  M+      PN+ TF     A + +  L  G  +HG +I+ +
Sbjct: 144 IRGYASSSDPTQSFLIFLHMLHSCSEFPNKFTFPFLFKAASRLKVLHLGSVLHGMVIKAS 203

Query: 348 FRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLF 407
             S+  +++SLI+ Y   G  +   +VF     K+  + WN MI+A    G  ++A+ LF
Sbjct: 204 LSSDLFILNSLINFYGSSGAPDLAHRVFTNMPGKD-VVSWNAMINAFALGGLPDKALLLF 262

Query: 408 HDMVRSSVKPDKITLAVILNACTHSGLVQEG---LTYFESMTHDLGIIPNQEHHACLIEL 464
            +M    VKP+ IT+  +L+AC     ++ G    +Y E+      +I N      ++++
Sbjct: 263 QEMEMKDVKPNVITMVSVLSACAKKIDLEFGRWICSYIENNGFTEHLILNNA----MLDM 318

Query: 465 LAQAGCSDQLMNQLEKMPYEHDSYLWNA-LHGVCRIHGNIDMGRKVVDQLIDQNPQSSAT 523
             + GC +   +   KM  E D   W   L G  ++ GN D    + D +   +  ++A 
Sbjct: 319 YVKCGCINDAKDLFNKMS-EKDIVSWTTMLDGHAKL-GNYDEAHCIFDAM--PHKWTAAW 374

Query: 524 HGLLSSIYSALGKGRLVEKVRQLINERQFKKE 555
           + L+S+ Y   GK R+      L +E Q  K+
Sbjct: 375 NALISA-YEQNGKPRV---ALSLFHEMQLSKD 402


>gi|224089505|ref|XP_002308737.1| predicted protein [Populus trichocarpa]
 gi|222854713|gb|EEE92260.1| predicted protein [Populus trichocarpa]
          Length = 590

 Score =  316 bits (809), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 166/481 (34%), Positives = 267/481 (55%), Gaps = 35/481 (7%)

Query: 118 NLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLR 177
           +L   N +L+ YA  G + +AR LFD M+ RDVV+W  +I GY++    ++ L     + 
Sbjct: 49  DLVMQNTLLNLYAKCGDLVYARKLFDEMSSRDVVTWTALITGYSQHDRPQDALLLLPEML 108

Query: 178 RFSISCNEFSFAGILTIC--VKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGE 235
           R  +  N+F+ A +L     V   ++   RQ+HG  L  G+ SNV +S +I+D YA+C  
Sbjct: 109 RIGLKPNQFTLASLLKAASGVGSTDVLQGRQLHGLCLRYGYDSNVYVSCAILDMYARCHH 168

Query: 236 LSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRN 295
           L                               E A  +F+ M  KN VSW  LIAGY R 
Sbjct: 169 L-------------------------------EEAQLIFDVMVSKNEVSWNALIAGYARK 197

Query: 296 GLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVM 355
           G G KA  LF+ M+   ++P   T+SS LCACAS+ SL+ GK VH  +I+   +    V 
Sbjct: 198 GQGDKAFCLFSNMLRENVKPTHFTYSSVLCACASMGSLEQGKWVHALMIKWGEKLVAFVG 257

Query: 356 SSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSV 415
           ++L+DMY+K G + D ++VFD    K + + WN+M++  +QHG  + A++ F +M+R+ +
Sbjct: 258 NTLLDMYAKSGSIEDAKKVFDRL-AKRDVVSWNSMLTGYSQHGLGKVALQRFEEMLRTRI 316

Query: 416 KPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLM 475
            P+ IT   +L AC+H+GL+ EG  YF+ M     + P   H+  +++LL +AG  D+ +
Sbjct: 317 APNDITFLCVLTACSHAGLLDEGRHYFD-MMKKYNVEPQISHYVTMVDLLGRAGHLDRAI 375

Query: 476 NQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALG 535
             + +MP +  + +W AL G CR+H N+++G    + + + +     TH LL +IY+  G
Sbjct: 376 QFISEMPIKPTAAVWGALLGACRMHKNMELGGYAAECIFELDSHYPGTHVLLYNIYALAG 435

Query: 536 KGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQMG 595
           +     KVR+++ E   KKE A SW+E+EN+VH F   D  HP R  ++++ EQ++ ++ 
Sbjct: 436 RWNDAAKVRKMMKESGVKKEPACSWVEMENEVHVFVADDDAHPQRREIHNMWEQISDKIK 495

Query: 596 E 596
           E
Sbjct: 496 E 496



 Score =  143 bits (360), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 104/409 (25%), Positives = 193/409 (47%), Gaps = 81/409 (19%)

Query: 191 ILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARD 250
           +L  C  L +L   + +H  +L + F  ++V+ +++++ YAKCG+L  AR+LFDE  +RD
Sbjct: 21  LLKRCTHLNKLNEGKIIHALLLNSRFRDDLVMQNTLLNLYAKCGDLVYARKLFDEMSSRD 80

Query: 251 VLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMI 310
           V+TWT +++GY++           ++ P                    Q AL L   M+ 
Sbjct: 81  VVTWTALITGYSQ-----------HDRP--------------------QDALLLLPEMLR 109

Query: 311 LRIRPNQHTFSSCLCACASIVS--LKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCL 368
           + ++PNQ T +S L A + + S  +  G+Q+HG  +R  + SN  V  +++DMY++C  L
Sbjct: 110 IGLKPNQFTLASLLKAASGVGSTDVLQGRQLHGLCLRYGYDSNVYVSCAILDMYARCHHL 169

Query: 369 NDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNA 428
            + + +FD+  +K N + WN +I+   + G  ++A  LF +M+R +VKP   T + +L A
Sbjct: 170 EEAQLIFDVMVSK-NEVSWNALIAGYARKGQGDKAFCLFSNMLRENVKPTHFTYSSVLCA 228

Query: 429 CTHSGLVQEGLTYFESMTHDLGIIPNQEHHA----CLIELLAQAGCSDQLMNQLEKMPYE 484
           C   G +++G        H L I   ++  A     L+++ A++G  +      +++  +
Sbjct: 229 CASMGSLEQG-----KWVHALMIKWGEKLVAFVGNTLLDMYAKSGSIEDAKKVFDRLA-K 282

Query: 485 HDSYLWNAL------HGV-----------------------------CRIHGNIDMGRKV 509
            D   WN++      HG+                             C   G +D GR  
Sbjct: 283 RDVVSWNSMLTGYSQHGLGKVALQRFEEMLRTRIAPNDITFLCVLTACSHAGLLDEGRHY 342

Query: 510 VDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAI 558
            D +   N +   +H +  ++   LG+   +++  Q I+E   K   A+
Sbjct: 343 FDMMKKYNVEPQISHYV--TMVDLLGRAGHLDRAIQFISEMPIKPTAAV 389



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 84/365 (23%), Positives = 150/365 (41%), Gaps = 69/365 (18%)

Query: 47  GIRLPAETLAFILQQCAESKSLKLGKRVHLH-LKLTQRKTPTTFLSNHLISMYFKCGSDV 105
           G++    TLA +L+  +   S  + +   LH L L        ++S  ++ MY +C    
Sbjct: 111 GLKPNQFTLASLLKAASGVGSTDVLQGRQLHGLCLRYGYDSNVYVSCAILDMYARCHHLE 170

Query: 106 DARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGA 165
           +A+ +FD +  KN  S+N +++GYA  G    A  LF NM                    
Sbjct: 171 EAQLIFDVMVSKNEVSWNALIAGYARKGQGDKAFCLFSNML------------------- 211

Query: 166 VEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSS 225
                       R ++    F+++ +L  C  +  L+  + VH  ++  G      + ++
Sbjct: 212 ------------RENVKPTHFTYSSVLCACASMGSLEQGKWVHALMIKWGEKLVAFVGNT 259

Query: 226 IVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSW 285
           ++D YAK G + DA+++FD    RDV++W +M++G                         
Sbjct: 260 LLDMYAKSGSIEDAKKVFDRLAKRDVVSWNSMLTG------------------------- 294

Query: 286 TTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIR 345
                 Y+++GLG+ AL+ F  M+  RI PN  TF   L AC+    L  G+     + +
Sbjct: 295 ------YSQHGLGKVALQRFEEMLRTRIAPNDITFLCVLTACSHAGLLDEGRHYFDMMKK 348

Query: 346 TNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQH------GY 399
            N         +++D+  + G L+   Q       K  + +W  ++ A   H      GY
Sbjct: 349 YNVEPQISHYVTMVDLLGRAGHLDRAIQFISEMPIKPTAAVWGALLGACRMHKNMELGGY 408

Query: 400 DEQAI 404
             + I
Sbjct: 409 AAECI 413



 Score = 75.9 bits (185), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 46/176 (26%), Positives = 94/176 (53%), Gaps = 8/176 (4%)

Query: 10  INRKNLPNNCLIQSFLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLK 69
           +++  +  N LI  +     KGQ  +A      + +  ++    T + +L  CA   SL+
Sbjct: 180 VSKNEVSWNALIAGY---ARKGQGDKAFCLFSNMLRENVKPTHFTYSSVLCACASMGSLE 236

Query: 70  LGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGY 129
            GK VH  L +   +    F+ N L+ MY K GS  DA+KVFD++  +++ S+N+ML+GY
Sbjct: 237 QGKWVHA-LMIKWGEKLVAFVGNTLLDMYAKSGSIEDAKKVFDRLAKRDVVSWNSMLTGY 295

Query: 130 ANLGMMKHARNLFDNMAERDV----VSWNTMIIGYAKSGAVEEGLKFYKVLRRFSI 181
           +  G+ K A   F+ M    +    +++  ++   + +G ++EG  ++ +++++++
Sbjct: 296 SQHGLGKVALQRFEEMLRTRIAPNDITFLCVLTACSHAGLLDEGRHYFDMMKKYNV 351


>gi|225466163|ref|XP_002263755.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 624

 Score =  316 bits (809), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 157/458 (34%), Positives = 261/458 (56%), Gaps = 1/458 (0%)

Query: 133 GMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGIL 192
           G + +A  +FD +   D   +NT+  GY +       +  Y  +   S+S N+F++  ++
Sbjct: 68  GDLNYALEVFDKIPHPDAYIYNTIFRGYLRWQLARNCIFMYSRMLHKSVSPNKFTYPPLI 127

Query: 193 TICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVL 252
             C     ++  +Q+H  VL  GF ++    ++++  Y     L  ARR+FD    RDV+
Sbjct: 128 RACCIDYAIEEGKQIHAHVLKFGFGADGFSLNNLIHMYVNFQSLEQARRVFDNMPQRDVV 187

Query: 253 TWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILR 312
           +WT++++GY++ G ++ A ++F  MPE+N VSW  +IA Y ++    +A  LF RM +  
Sbjct: 188 SWTSLITGYSQWGFVDKAREVFELMPERNSVSWNAMIAAYVQSNRLHEAFALFDRMRLEN 247

Query: 313 IRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGR 372
           +  ++   +S L AC  + +L+ GK +HG++ ++    ++ + +++IDMY KCGCL    
Sbjct: 248 VVLDKFVAASMLSACTGLGALEQGKWIHGYIEKSGIELDSKLATTVIDMYCKCGCLEKAS 307

Query: 373 QVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHS 432
           +VF+    K  S  WN MI  L  HG  E AI LF +M R  V PD IT   +L+AC HS
Sbjct: 308 EVFNELPQKGISS-WNCMIGGLAMHGKGEAAIELFKEMEREMVAPDGITFVNVLSACAHS 366

Query: 433 GLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNA 492
           GLV+EG  YF+ MT  LG+ P  EH  C+++LL +AG  ++    + +MP   D+ +  A
Sbjct: 367 GLVEEGKHYFQYMTEVLGLKPGMEHFGCMVDLLGRAGLLEEARKLINEMPVNPDAGVLGA 426

Query: 493 LHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQF 552
           L G CRIHGN ++G ++  ++I+  P +S  + LL+++Y++ G+   V KVR+L+N+R  
Sbjct: 427 LVGACRIHGNTELGEQIGKKVIELEPHNSGRYVLLANLYASAGRWEDVAKVRKLMNDRGV 486

Query: 553 KKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQL 590
           KK    S IE E+ V  F      HP    +Y+ L+++
Sbjct: 487 KKAPGFSMIESESGVDEFIAGGRAHPQAKEIYAKLDEI 524



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 88/349 (25%), Positives = 164/349 (46%), Gaps = 33/349 (9%)

Query: 54  TLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDK 113
           T   +++ C    +++ GK++H H+ L        F  N+LI MY    S   AR+VFD 
Sbjct: 122 TYPPLIRACCIDYAIEEGKQIHAHV-LKFGFGADGFSLNNLIHMYVNFQSLEQARRVFDN 180

Query: 114 IPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFY 173
           +P +++ S+ ++++GY+  G +  AR +F+ M ER+ VSWN MI  Y +S  + E    +
Sbjct: 181 MPQRDVVSWTSLITGYSQWGFVDKAREVFELMPERNSVSWNAMIAAYVQSNRLHEAFALF 240

Query: 174 KVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKC 233
             +R  ++  ++F  A +L+ C  L  L+  + +HG +  +G   +  ++++++D Y KC
Sbjct: 241 DRMRLENVVLDKFVAASMLSACTGLGALEQGKWIHGYIEKSGIELDSKLATTVIDMYCKC 300

Query: 234 GELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYT 293
           G L  A  +F+E   + + +W  M+ G A  G  E+A +LF EM                
Sbjct: 301 GCLEKASEVFNELPQKGISSWNCMIGGLAMHGKGEAAIELFKEM---------------- 344

Query: 294 RNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRT-NFRSNT 352
                        R M+    P+  TF + L ACA    ++ GK    ++      +   
Sbjct: 345 ------------EREMVA---PDGITFVNVLSACAHSGLVEEGKHYFQYMTEVLGLKPGM 389

Query: 353 IVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDE 401
                ++D+  + G L + R++ +      ++ +   ++ A   HG  E
Sbjct: 390 EHFGCMVDLLGRAGLLEEARKLINEMPVNPDAGVLGALVGACRIHGNTE 438



 Score = 97.8 bits (242), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 98/425 (23%), Positives = 175/425 (41%), Gaps = 104/425 (24%)

Query: 192 LTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVD--AYAKCGELSDARRLFDETDAR 249
           L  C  + ELK   Q H Q++  G  ++      ++   A +K G+L+ A  +FD     
Sbjct: 27  LDSCSTMAELK---QYHSQIIRLGLSADNDAMGRVIKFCAISKSGDLNYALEVFD----- 78

Query: 250 DVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMM 309
                                     ++P  +   + T+  GY R  L +  + +++RM+
Sbjct: 79  --------------------------KIPHPDAYIYNTIFRGYLRWQLARNCIFMYSRML 112

Query: 310 ILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIR-----------------TNFRS-- 350
              + PN+ T+   + AC    +++ GKQ+H  +++                  NF+S  
Sbjct: 113 HKSVSPNKFTYPPLIRACCIDYAIEEGKQIHAHVLKFGFGADGFSLNNLIHMYVNFQSLE 172

Query: 351 ------------NTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHG 398
                       + +  +SLI  YS+ G ++  R+VF+L   + NS+ WN MI+A  Q  
Sbjct: 173 QARRVFDNMPQRDVVSWTSLITGYSQWGFVDKAREVFELMPER-NSVSWNAMIAAYVQSN 231

Query: 399 YDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHH 458
              +A  LF  M   +V  DK   A +L+ACT  G +++G  +        GI  + +  
Sbjct: 232 RLHEAFALFDRMRLENVVLDKFVAASMLSACTGLGALEQG-KWIHGYIEKSGIELDSKLA 290

Query: 459 ACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGN--------IDMGRKVV 510
             +I++  + GC ++      ++P +  S  WN + G   +HG          +M R++V
Sbjct: 291 TTVIDMYCKCGCLEKASEVFNELPQKGISS-WNCMIGGLAMHGKGEAAIELFKEMEREMV 349

Query: 511 --DQLIDQNPQSSATH-GLLSS-----------------------IYSALGKGRLVEKVR 544
             D +   N  S+  H GL+                         +   LG+  L+E+ R
Sbjct: 350 APDGITFVNVLSACAHSGLVEEGKHYFQYMTEVLGLKPGMEHFGCMVDLLGRAGLLEEAR 409

Query: 545 QLINE 549
           +LINE
Sbjct: 410 KLINE 414


>gi|413946157|gb|AFW78806.1| hypothetical protein ZEAMMB73_634908 [Zea mays]
          Length = 1145

 Score =  316 bits (809), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 162/485 (33%), Positives = 274/485 (56%), Gaps = 2/485 (0%)

Query: 106 DARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGA 165
           DA+ +FD+I   N+ S+N M++GY    M+  A +LF+ M  R+ +SW  MI GYA++G 
Sbjct: 339 DAKILFDQIHEPNVVSWNAMITGYMQNEMVDEAEDLFNRMPFRNTISWAGMIAGYARNGR 398

Query: 166 VEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSS 225
            E+ L   + L R  +  +  S       C  +E L+  +QVH   +  G   N  + ++
Sbjct: 399 SEQALVSLQALHRKGMLPSLSSLTSSFFACSNIEALETGKQVHSLAVKAGCQFNSYVCNA 458

Query: 226 IVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSW 285
           ++  Y K   +   R++FD    +D +++ + +S   +    + A  +FN MP  + VSW
Sbjct: 459 LITLYGKYRSIGSVRQIFDRMTVKDTVSYNSFMSALVQNNLFDEARDVFNNMPSPDVVSW 518

Query: 286 TTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIR 345
           TT+I+   +   G +A+E+F  M+  R  PN    +  L    ++ + + G+Q+H   I+
Sbjct: 519 TTIISACAQADQGNEAVEIFRSMLHERELPNPPILTILLGLSGNLGAPQLGQQIHTIAIK 578

Query: 346 TNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIR 405
               S  +V ++L+ MY KC    D  +VFD  + ++    WNT+I+   QHG   +AIR
Sbjct: 579 LGMDSGLVVANALVSMYFKCSSA-DSLKVFDSMEERD-IFTWNTIITGYAQHGLGREAIR 636

Query: 406 LFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELL 465
           ++  MV + V P+++T   +L+AC+HSGLV EG  +F+SM+ D G+ P  EH+AC+++LL
Sbjct: 637 MYQLMVSAGVLPNEVTFVGLLHACSHSGLVDEGHQFFKSMSSDYGLTPLLEHYACMVDLL 696

Query: 466 AQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHG 525
            +AG      + +  MP E DS +W+AL G C+IH N+++GR+  ++L    P ++  + 
Sbjct: 697 GRAGDVQGAEHFIYDMPIEPDSVIWSALLGACKIHKNVEIGRRAAEKLFSIEPSNAGNYV 756

Query: 526 LLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYS 585
           +LS+IYS+ G    V KVR+L+ ER   K+   SW++I+NK+H+F   D  H     +Y+
Sbjct: 757 MLSNIYSSQGMWDEVAKVRKLMKERGVNKDPGCSWMQIKNKMHSFVTGDEEHEQIQNIYA 816

Query: 586 VLEQL 590
            L +L
Sbjct: 817 TLWEL 821



 Score =  167 bits (424), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 124/460 (26%), Positives = 217/460 (47%), Gaps = 76/460 (16%)

Query: 88  TFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAE 147
           T   N +++ Y + G    ARK+FD +P +++ S+N ML+GY +  +M+ ARNLF+ M E
Sbjct: 126 TVAWNAMVTCYVQNGDITLARKLFDAMPSRDVSSWNTMLTGYCHSQLMEEARNLFERMPE 185

Query: 148 RDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRF---SISCNEFSFAGILTICVKLEELKLT 204
           R+ VSW  MI GY     +E+  + + + R      ++  + +   +L+    L +  + 
Sbjct: 186 RNGVSWTVMISGYV---LIEQHGRAWDMFRTMLCEGMTPEQPNLVSVLSAVRHLGKPGIL 242

Query: 205 RQVHGQVLVTGFLSNVVISSSIVDAYAK-CGELSDARRLFDETDARDVLTW--------- 254
             +H  V  TGF  +VV+ ++I++ Y K    L  A + F+   AR+  TW         
Sbjct: 243 ESIHVLVHKTGFERDVVVGTAILNGYTKDVNMLDSAVKFFEGMAARNEYTWSTIIAALSQ 302

Query: 255 ----------------------TTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGY 292
                                 T+M++G A+ G ++ A  LF+++ E N VSW  +I GY
Sbjct: 303 AGRIDDAFAVYQRDPLKSVPSRTSMLTGLARYGRIDDAKILFDQIHEPNVVSWNAMITGY 362

Query: 293 TRNGLGQKALELFTRM----------MILRIRPNQHTFSSCLC----------------- 325
            +N +  +A +LF RM          MI     N  +  + +                  
Sbjct: 363 MQNEMVDEAEDLFNRMPFRNTISWAGMIAGYARNGRSEQALVSLQALHRKGMLPSLSSLT 422

Query: 326 ----ACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNK 381
               AC++I +L+ GKQVH   ++   + N+ V ++LI +Y K   +   RQ+FD    K
Sbjct: 423 SSFFACSNIEALETGKQVHSLAVKAGCQFNSYVCNALITLYGKYRSIGSVRQIFDRMTVK 482

Query: 382 ENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTY 441
           + ++ +N+ +SAL Q+   ++A  +F++M      PD ++   I++AC  +    E +  
Sbjct: 483 D-TVSYNSFMSALVQNNLFDEARDVFNNM----PSPDVVSWTTIISACAQADQGNEAVEI 537

Query: 442 FESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKM 481
           F SM H+   +PN      L+ L    G + QL  Q+  +
Sbjct: 538 FRSMLHERE-LPNPPILTILLGLSGNLG-APQLGQQIHTI 575



 Score =  135 bits (341), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 93/354 (26%), Positives = 166/354 (46%), Gaps = 17/354 (4%)

Query: 132 LGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGI 191
           LG +  AR +FD+M  RD+++WN+MI  Y  +G  + G      +   ++       +G 
Sbjct: 46  LGRLHEAREVFDSMPFRDIIAWNSMIFAYCNNGMPDAGRSLADAISGGNLRTGTILLSGY 105

Query: 192 LTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDV 251
                +   ++  R+V   + V     N V  +++V  Y + G+++ AR+LFD   +RDV
Sbjct: 106 ----ARAGRVRDARRVFDGMGV----RNTVAWNAMVTCYVQNGDITLARKLFDAMPSRDV 157

Query: 252 LTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMIL 311
            +W TM++GY     ME A  LF  MPE+N VSWT +I+GY       +A ++F  M+  
Sbjct: 158 SSWNTMLTGYCHSQLMEEARNLFERMPERNGVSWTVMISGYVLIEQHGRAWDMFRTMLCE 217

Query: 312 RIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDG 371
            + P Q    S L A   +      + +H  + +T F  + +V +++++ Y+K   + D 
Sbjct: 218 GMTPEQPNLVSVLSAVRHLGKPGILESIHVLVHKTGFERDVVVGTAILNGYTKDVNMLDS 277

Query: 372 RQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTH 431
              F       N   W+T+I+AL+Q G  + A  ++      SV P + ++   L     
Sbjct: 278 AVKFFEGMAARNEYTWSTIIAALSQAGRIDDAFAVYQRDPLKSV-PSRTSM---LTGLAR 333

Query: 432 SGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEH 485
            G + +    F+ + H+    PN      +I    Q    D+  +   +MP+ +
Sbjct: 334 YGRIDDAKILFDQI-HE----PNVVSWNAMITGYMQNEMVDEAEDLFNRMPFRN 382



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 90/373 (24%), Positives = 179/373 (47%), Gaps = 44/373 (11%)

Query: 31  GQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFL 90
           G+  +A+ SL  L ++G+     +L      C+  ++L+ GK+VH  L +       +++
Sbjct: 397 GRSEQALVSLQALHRKGMLPSLSSLTSSFFACSNIEALETGKQVH-SLAVKAGCQFNSYV 455

Query: 91  SNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDV 150
            N LI++Y K  S    R++FD++ VK+  SYN+ +S      +   AR++F+NM   DV
Sbjct: 456 CNALITLYGKYRSIGSVRQIFDRMTVKDTVSYNSFMSALVQNNLFDEARDVFNNMPSPDV 515

Query: 151 VSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLE----ELKLTRQ 206
           VSW T+I   A++    E ++ ++ +    +   E     ILTI + L       +L +Q
Sbjct: 516 VSWTTIISACAQADQGNEAVEIFRSM----LHERELPNPPILTILLGLSGNLGAPQLGQQ 571

Query: 207 VHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGD 266
           +H   +  G  S +V+++++V  Y KC   +D+ ++FD  + RD+ TW T+++GYA+   
Sbjct: 572 IHTIAIKLGMDSGLVVANALVSMYFKCSS-ADSLKVFDSMEERDIFTWNTIITGYAQ--- 627

Query: 267 MESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCA 326
                                       +GLG++A+ ++  M+   + PN+ TF   L A
Sbjct: 628 ----------------------------HGLGREAIRMYQLMVSAGVLPNEVTFVGLLHA 659

Query: 327 CASIVSLKHGKQVHGFLIRTNFRSNTIV--MSSLIDMYSKCGCLNDGRQVFDLTDNKENS 384
           C+    +  G Q    +  +++    ++   + ++D+  + G +            + +S
Sbjct: 660 CSHSGLVDEGHQFFKSM-SSDYGLTPLLEHYACMVDLLGRAGDVQGAEHFIYDMPIEPDS 718

Query: 385 MLWNTMISALTQH 397
           ++W+ ++ A   H
Sbjct: 719 VIWSALLGACKIH 731



 Score = 68.6 bits (166), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 81/371 (21%), Positives = 147/371 (39%), Gaps = 55/371 (14%)

Query: 224 SSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPV 283
           S+ +    + G L +AR +FD    RD++ W +M+  Y   G  ++   L + +   N  
Sbjct: 37  SARIRELGRLGRLHEAREVFDSMPFRDIIAWNSMIFAYCNNGMPDAGRSLADAISGGNLR 96

Query: 284 SWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFL 343
           + T L++GY R G  + A  +F  M + R     +   +C      I   +  K      
Sbjct: 97  TGTILLSGYARAGRVRDARRVFDGMGV-RNTVAWNAMVTCYVQNGDITLAR--KLFDAMP 153

Query: 344 IRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISA---LTQHGYD 400
            R     NT++       Y     + + R +F+    + N + W  MIS    + QHG  
Sbjct: 154 SRDVSSWNTMLTG-----YCHSQLMEEARNLFERMPER-NGVSWTVMISGYVLIEQHG-- 205

Query: 401 EQAIRLFHDMVRSSVKPDKITLAVILNACTHSG----------LVQE---------GLTY 441
            +A  +F  M+   + P++  L  +L+A  H G          LV +         G   
Sbjct: 206 -RAWDMFRTMLCEGMTPEQPNLVSVLSAVRHLGKPGILESIHVLVHKTGFERDVVVGTAI 264

Query: 442 FESMTHDLGIIP------------NQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYL 489
               T D+ ++             N+   + +I  L+QAG  D      ++ P +     
Sbjct: 265 LNGYTKDVNMLDSAVKFFEGMAARNEYTWSTIIAALSQAGRIDDAFAVYQRDPLKSVPSR 324

Query: 490 WNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINE 549
            + L G+ R +G ID  + + DQ+ + N  S       +++ +   +  +V++   L N 
Sbjct: 325 TSMLTGLAR-YGRIDDAKILFDQIHEPNVVS------WNAMITGYMQNEMVDEAEDLFNR 377

Query: 550 RQFKKEQAISW 560
             F+    ISW
Sbjct: 378 MPFR--NTISW 386


>gi|413944960|gb|AFW77609.1| hypothetical protein ZEAMMB73_798524 [Zea mays]
          Length = 665

 Score =  316 bits (809), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 161/518 (31%), Positives = 284/518 (54%), Gaps = 13/518 (2%)

Query: 89  FLSNHLISMYFKCGSDVDARKVFDKIP--VKNLFSYNNMLSGYANLGMMKHARNLFDNM- 145
           F+++ L+  Y + G+  +AR +FD +P   + +  ++ +++ +A  G  + A  L + M 
Sbjct: 53  FVASSLLHAYLRLGTTGNARALFDGMPRPQRTVVGWSALVAAHAARGDAEGAWRLLEEMR 112

Query: 146 ----AERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSI-SCNEFSFAGILTICVKLEE 200
                E +V++WN ++ G  +SG   + +     +    +   +    +  L+    +  
Sbjct: 113 RDGGVEPNVITWNGLVSGLNRSGRARDAVVALATMHGEGLLRPDATGVSCALSAVGDVGL 172

Query: 201 LKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSG 260
           + + +Q+HG  +  G  ++  + ++++D Y KCG+ ++  R+FDE+   DV +   +++G
Sbjct: 173 VSVGQQLHGYAVKAGCRADACVVTALIDMYGKCGQAAEVVRVFDESSHMDVASCNALIAG 232

Query: 261 YAKLGDMESASKLFNEMPEK----NPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPN 316
            ++   +  A +LF E  ++    N VSWT+++A   +NG   +A+E F  M      PN
Sbjct: 233 LSRNAQVCEALRLFKEFVDRGVELNVVSWTSIVACCVQNGKDLEAVEFFREMQAQGTEPN 292

Query: 317 QHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFD 376
             T    L A A++ +L HG+  H F +R  F  +  V S+L+DMY+KCG + D R +FD
Sbjct: 293 SVTIPCVLPAFANVAALMHGRSAHCFALRKGFLHDVYVSSALVDMYAKCGRVKDARIIFD 352

Query: 377 LTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQ 436
            T    N + WN MI     +G    A+ +FH M++   KPD +T   +L ACT +GL +
Sbjct: 353 -TMVSRNVVSWNAMIGGYAMYGEAVNAVWMFHSMLKCKQKPDMVTFTCLLAACTQAGLTE 411

Query: 437 EGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGV 496
           EG  YF+ M ++ G+ P  EH+AC++ LL +AG  D+  + +  MP+E D+Y+W +L G 
Sbjct: 412 EGRHYFKEMHNEYGVSPRMEHYACMVTLLGRAGKLDEAYDLISDMPFEPDAYIWGSLLGS 471

Query: 497 CRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQ 556
           CR+HGN+D+     ++L    P+++  + LLS+IY++      V +VR+++ +   KKE+
Sbjct: 472 CRVHGNVDLAEVAAEKLFHLEPENAGNYVLLSNIYASKKMWDRVNRVREMMKDVGLKKEK 531

Query: 557 AISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQM 594
             SWIEI+NKVH     D  HPM   +   + QL  QM
Sbjct: 532 GCSWIEIKNKVHMLLAGDDSHPMMTAIIEKINQLNIQM 569



 Score =  132 bits (333), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 91/331 (27%), Positives = 162/331 (48%), Gaps = 19/331 (5%)

Query: 201 LKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFD--ETDARDVLTWTTMV 258
           L L R +H    V+G   +  ++SS++ AY + G   +AR LFD      R V+ W+ +V
Sbjct: 33  LPLARALHAVAEVSGLARDPFVASSLLHAYLRLGTTGNARALFDGMPRPQRTVVGWSALV 92

Query: 259 SGYAKLGDMESASKLFNEMP-----EKNPVSWTTLIAGYTRNGLGQKA-LELFTRMMILR 312
           + +A  GD E A +L  EM      E N ++W  L++G  R+G  + A + L T      
Sbjct: 93  AAHAARGDAEGAWRLLEEMRRDGGVEPNVITWNGLVSGLNRSGRARDAVVALATMHGEGL 152

Query: 313 IRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGR 372
           +RP+    S  L A   +  +  G+Q+HG+ ++   R++  V+++LIDMY KCG   +  
Sbjct: 153 LRPDATGVSCALSAVGDVGLVSVGQQLHGYAVKAGCRADACVVTALIDMYGKCGQAAEVV 212

Query: 373 QVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHS 432
           +VFD + + + +   N +I+ L+++    +A+RLF + V   V+ + ++   I+  C  +
Sbjct: 213 RVFDESSHMDVASC-NALIAGLSRNAQVCEALRLFKEFVDRGVELNVVSWTSIVACCVQN 271

Query: 433 GLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLE------KMPYEHD 486
           G   E + +F  M    G  PN     C++   A       LM+         +  + HD
Sbjct: 272 GKDLEAVEFFREMQAQ-GTEPNSVTIPCVLPAFANVA---ALMHGRSAHCFALRKGFLHD 327

Query: 487 SYLWNALHGVCRIHGNIDMGRKVVDQLIDQN 517
            Y+ +AL  +    G +   R + D ++ +N
Sbjct: 328 VYVSSALVDMYAKCGRVKDARIIFDTMVSRN 358



 Score = 49.7 bits (117), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 35/158 (22%), Positives = 71/158 (44%), Gaps = 7/158 (4%)

Query: 315 PNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQV 374
           P+ H   +   +C +   L   + +H     +    +  V SSL+  Y + G   + R +
Sbjct: 18  PDPHLLPTAFKSCPT---LPLARALHAVAEVSGLARDPFVASSLLHAYLRLGTTGNARAL 74

Query: 375 FDLTDNKENSML-WNTMISALTQHGYDEQAIRLFHDMVR-SSVKPDKITLAVILNACTHS 432
           FD     + +++ W+ +++A    G  E A RL  +M R   V+P+ IT   +++    S
Sbjct: 75  FDGMPRPQRTVVGWSALVAAHAARGDAEGAWRLLEEMRRDGGVEPNVITWNGLVSGLNRS 134

Query: 433 GLVQEGLTYFESMTHDLGII-PNQEHHACLIELLAQAG 469
           G  ++ +    +M H  G++ P+    +C +  +   G
Sbjct: 135 GRARDAVVALATM-HGEGLLRPDATGVSCALSAVGDVG 171


>gi|225447043|ref|XP_002269269.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 640

 Score =  315 bits (808), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 169/517 (32%), Positives = 284/517 (54%), Gaps = 8/517 (1%)

Query: 85  TPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLS---GYANL---GMMKHA 138
           TP       ++     C +  D  ++  +     +FS N + S    +A L   G + +A
Sbjct: 29  TPQLLCKYPILRHLSSCKTLKDLTQIHAQTITTGIFSDNFVASRILSFAALSPHGSIPYA 88

Query: 139 RNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEF-SFAGILTICVK 197
           R LF  + + D+   NT+I  YA S    + + FY  +   S+   +  +F  +L  C +
Sbjct: 89  RFLFYRIRKPDIFIANTLIRAYAFSPNPIDAVVFYSEMTESSVVFPDVHTFPLLLKACSE 148

Query: 198 LEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTM 257
           +  L+L   +H  V   G+ S V +S+ +V  YA CG +  A  +FD T   D  +W  M
Sbjct: 149 IPSLRLGEAIHSHVFKLGWSSEVSVSNFLVQMYASCGLIESAGLVFDRTPECDGASWNIM 208

Query: 258 VSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQ 317
           + GY K G  +SA ++F  MP+++ VSW+ +I GY +    ++ L LF  MM  +I PN+
Sbjct: 209 IGGYLKCGVFKSARRMFEAMPDRDVVSWSVMINGYVQESRFKEGLGLFQDMMGEKIEPNE 268

Query: 318 HTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDL 377
               + L ACA + +++ G+ +  ++ R N R    + ++LIDMYSKCG +    +VF  
Sbjct: 269 SVLVNALSACAHLGAMEQGQWIERYMERKNVRLTVRLGTALIDMYSKCGSVERALEVFHK 328

Query: 378 TDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQE 437
              K N + W+ MI+ L  +G  + A+ LF  M    VKP+++T   ILNAC+HS LV E
Sbjct: 329 MKEK-NVLAWSAMINGLAINGQGKDALNLFSQMEMQGVKPNEVTFIGILNACSHSKLVDE 387

Query: 438 GLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVC 497
           G ++F SMT   G+ PN  HH C+++L  +AG  DQ    ++ MP++ +S +W AL   C
Sbjct: 388 GCSFFHSMTSIYGLKPNAHHHCCMVDLYGRAGMLDQAQTVIKSMPFKPNSAIWGALLNAC 447

Query: 498 RIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQA 557
           RIHG+ ++G +V  +L++ +P     + LLS+IY+A G+   V ++R+++ ERQ  K   
Sbjct: 448 RIHGDTELGEQVGKRLLELDPNHGGRYVLLSNIYAACGRWDRVAELRRMMRERQVSKTPG 507

Query: 558 ISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQM 594
            S+I++ + +H F   DS HP  +++Y+ L +++ ++
Sbjct: 508 CSFIDLGDTIHEFVAGDSSHPQLEMIYAKLGEMSQEL 544



 Score =  156 bits (394), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 97/349 (27%), Positives = 162/349 (46%), Gaps = 33/349 (9%)

Query: 54  TLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDK 113
           T   +L+ C+E  SL+LG+ +H H+      +  + +SN L+ MY  CG    A  VFD+
Sbjct: 138 TFPLLLKACSEIPSLRLGEAIHSHVFKLGWSSEVS-VSNFLVQMYASCGLIESAGLVFDR 196

Query: 114 IPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFY 173
            P  +  S+N M+ GY   G+ K AR +F+ M +RDVVSW+ MI GY +    +EGL  +
Sbjct: 197 TPECDGASWNIMIGGYLKCGVFKSARRMFEAMPDRDVVSWSVMINGYVQESRFKEGLGLF 256

Query: 174 KVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKC 233
           + +    I  NE      L+ C  L  ++  + +   +        V + ++++D Y+KC
Sbjct: 257 QDMMGEKIEPNESVLVNALSACAHLGAMEQGQWIERYMERKNVRLTVRLGTALIDMYSKC 316

Query: 234 GELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYT 293
           G +  A  +F +   ++VL W+ M++G A                               
Sbjct: 317 GSVERALEVFHKMKEKNVLAWSAMINGLAI------------------------------ 346

Query: 294 RNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQ-VHGFLIRTNFRSNT 352
            NG G+ AL LF++M +  ++PN+ TF   L AC+    +  G    H        + N 
Sbjct: 347 -NGQGKDALNLFSQMEMQGVKPNEVTFIGILNACSHSKLVDEGCSFFHSMTSIYGLKPNA 405

Query: 353 IVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDE 401
                ++D+Y + G L+  + V      K NS +W  +++A   HG  E
Sbjct: 406 HHHCCMVDLYGRAGMLDQAQTVIKSMPFKPNSAIWGALLNACRIHGDTE 454


>gi|224138422|ref|XP_002322810.1| predicted protein [Populus trichocarpa]
 gi|222867440|gb|EEF04571.1| predicted protein [Populus trichocarpa]
          Length = 562

 Score =  315 bits (808), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 165/498 (33%), Positives = 268/498 (53%), Gaps = 32/498 (6%)

Query: 97  MYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTM 156
           MYFK G   +A   F+ +P++N+ S+N +++G+   G +  A  +FD M ER+V +WN M
Sbjct: 1   MYFKMGEIQEAIAFFNAMPMRNIMSHNILINGHVQHGDLDSAIKVFDEMLERNVATWNAM 60

Query: 157 IIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGF 216
           + G  +    E GL  ++ +       +EF+   +L  C  L      +QVH  VL  G+
Sbjct: 61  VSGLIQFEFNENGLFLFREMHELGFLPDEFTLGSVLRGCAGLRASYAGKQVHAYVLKYGY 120

Query: 217 LSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNE 276
             N+V+ SS+   Y K G L +                                 K+   
Sbjct: 121 EFNLVVGSSLAHMYMKSGSLGEGE-------------------------------KVIKA 149

Query: 277 MPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHG 336
           M  +N V+W TLIAG  +NG  +  L+L+  M +  +RP++ T  S + + A + +L  G
Sbjct: 150 MRIRNVVAWNTLIAGNAQNGHFEGVLDLYNMMKMSGLRPDKITLVSVISSSAELATLFQG 209

Query: 337 KQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQ 396
           +Q+H   I+    S   V+SSLI MYSKCGCL D  +   L     +S+LW++MI+A   
Sbjct: 210 QQIHAEAIKAGANSAVAVLSSLISMYSKCGCLEDSMKAL-LDCEHPDSVLWSSMIAAYGF 268

Query: 397 HGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQE 456
           HG  E+A+ LF  M +  +  + +T   +L AC+H+GL ++G+ +F+ M    G+ P  E
Sbjct: 269 HGRGEEAVHLFEQMEQEGLGGNDVTFLSLLYACSHNGLKEKGMGFFKLMVEKYGLKPRLE 328

Query: 457 HHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQ 516
           H+ C+++LL ++GC D+    +  MP E D  +W  L   CRIH N DM  +  ++++  
Sbjct: 329 HYTCVVDLLGRSGCLDEAEAMIRSMPLEADVVIWKTLLSACRIHRNADMATRTAEEILRL 388

Query: 517 NPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSL 576
           NPQ SAT+ LLS+I+++  + + V KVR  + +R  KKE  +SW+E++N+V  FS+ D  
Sbjct: 389 NPQDSATYVLLSNIHASAKRWKDVSKVRTTMRDRNVKKEPGVSWLEVKNRVFQFSMGDKS 448

Query: 577 HPMRDVLYSVLEQLAGQM 594
           HPM + +   L++L  +M
Sbjct: 449 HPMSEEIDLYLKELMEEM 466



 Score = 99.4 bits (246), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 80/368 (21%), Positives = 156/368 (42%), Gaps = 71/368 (19%)

Query: 50  LPAE-TLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDAR 108
           LP E TL  +L+ CA  ++   GK+VH ++ L         + + L  MY K GS  +  
Sbjct: 86  LPDEFTLGSVLRGCAGLRASYAGKQVHAYV-LKYGYEFNLVVGSSLAHMYMKSGSLGEGE 144

Query: 109 KVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEE 168
           KV   + ++N+ ++N                               T+I G A++G  E 
Sbjct: 145 KVIKAMRIRNVVAWN-------------------------------TLIAGNAQNGHFEG 173

Query: 169 GLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVD 228
            L  Y +++   +  ++ +   +++   +L  L   +Q+H + +  G  S V + SS++ 
Sbjct: 174 VLDLYNMMKMSGLRPDKITLVSVISSSAELATLFQGQQIHAEAIKAGANSAVAVLSSLIS 233

Query: 229 AYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEK----NPVS 284
            Y+KCG L D+ +   + +  D + W++M++ Y   G  E A  LF +M ++    N V+
Sbjct: 234 MYSKCGCLEDSMKALLDCEHPDSVLWSSMIAAYGFHGRGEEAVHLFEQMEQEGLGGNDVT 293

Query: 285 WTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLI 344
           + +L+   + NGL +K +  F  M                              V  + +
Sbjct: 294 FLSLLYACSHNGLKEKGMGFFKLM------------------------------VEKYGL 323

Query: 345 RTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAI 404
           +      T V    +D+  + GCL++   +      + + ++W T++SA   H   + A 
Sbjct: 324 KPRLEHYTCV----VDLLGRSGCLDEAEAMIRSMPLEADVVIWKTLLSACRIHRNADMAT 379

Query: 405 RLFHDMVR 412
           R   +++R
Sbjct: 380 RTAEEILR 387



 Score = 49.7 bits (117), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 35/150 (23%), Positives = 72/150 (48%), Gaps = 5/150 (3%)

Query: 31  GQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFL 90
           G     +   +++   G+R    TL  ++   AE  +L  G+++H         +    L
Sbjct: 169 GHFEGVLDLYNMMKMSGLRPDKITLVSVISSSAELATLFQGQQIHAEAIKAGANSAVAVL 228

Query: 91  SNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDV 150
           S+ LISMY KCG   D+ K        +   +++M++ Y   G  + A +LF+ M +  +
Sbjct: 229 SS-LISMYSKCGCLEDSMKALLDCEHPDSVLWSSMIAAYGFHGRGEEAVHLFEQMEQEGL 287

Query: 151 ----VSWNTMIIGYAKSGAVEEGLKFYKVL 176
               V++ +++   + +G  E+G+ F+K++
Sbjct: 288 GGNDVTFLSLLYACSHNGLKEKGMGFFKLM 317


>gi|347954526|gb|AEP33763.1| organelle transcript processing 82, partial [Isatis tinctoria]
          Length = 671

 Score =  315 bits (808), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 181/556 (32%), Positives = 298/556 (53%), Gaps = 38/556 (6%)

Query: 34  SEAISSLDL---LAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFL 90
           S+ +SSL L   +   G+   + T  F+L+ CA+SK+   G+++H  + L        ++
Sbjct: 43  SDPVSSLTLYVCMVSLGLLPNSYTFPFLLKSCAKSKTFTEGQQIHGQV-LKLGFDLDLYV 101

Query: 91  SNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDV 150
              LISMY +     DA KVFD+   +++ SY  +++GYA+ G ++ A+ LFD +  +DV
Sbjct: 102 HTSLISMYVQNWRLEDAYKVFDRSSHRDVVSYTALITGYASRGDIRSAQKLFDEIPVKDV 161

Query: 151 VSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQ 210
           VSWN MI GYA++G  +E L+ ++ + + ++  +E ++  +L+ C     ++L RQVH  
Sbjct: 162 VSWNAMISGYAETGCYKEALELFEEMMKMNVRPDESTYVTVLSACAHSGSIELGRQVHSW 221

Query: 211 VLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESA 270
           V   GF SN+ I ++++D Y+KCGE+                               E+A
Sbjct: 222 VDDHGFDSNLKIVNALIDLYSKCGEV-------------------------------ETA 250

Query: 271 SKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASI 330
             LF  +  K+ +SW TLI GYT   L ++AL LF  M+     PN  T  S L ACA +
Sbjct: 251 CGLFQGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSVLPACAHL 310

Query: 331 VSLKHGKQVHGFLIR--TNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWN 388
            ++  G+ +H ++ +      + + + +SLIDMY+KCG +    QVF+   +K  S  WN
Sbjct: 311 GAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSMLHKSLSS-WN 369

Query: 389 TMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHD 448
            MI     HG  + +  LF  M +  ++PD IT   +L+AC+HSG++  G   F SMT D
Sbjct: 370 AMIFGFAMHGRADASFDLFSRMRKIGIEPDDITFVGLLSACSHSGMLDLGRHIFRSMTQD 429

Query: 449 LGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRK 508
             + P  EH+ C+I+LL  +G   +    +  M  E D  +W +L   C++HGN+++   
Sbjct: 430 YKMTPKLEHYGCMIDLLGHSGLFKEAEEMINTMEMEPDGVIWCSLLKACKMHGNVELAES 489

Query: 509 VVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVH 568
               LI   P++ +++ LLS+IY++ G+   V ++R L+N +  KK    S IE+++ V 
Sbjct: 490 FAQNLIKIEPENPSSYILLSNIYASAGRWEDVARIRALLNGKCMKKVPGCSSIEVDSVVF 549

Query: 569 AFSVSDSLHPMRDVLY 584
            F V D  HP    +Y
Sbjct: 550 EFVVGDKFHPQNREIY 565



 Score =  221 bits (562), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 128/398 (32%), Positives = 214/398 (53%), Gaps = 5/398 (1%)

Query: 135 MKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTI 194
           + +A ++F+ + E + + WNTMI G+A S      L  Y  +    +  N ++F  +L  
Sbjct: 14  LPYATSVFETIQEPNQLIWNTMIRGHALSSDPVSSLTLYVCMVSLGLLPNSYTFPFLLKS 73

Query: 195 CVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTW 254
           C K +     +Q+HGQVL  GF  ++ + +S++  Y +   L DA ++FD +  RDV+++
Sbjct: 74  CAKSKTFTEGQQIHGQVLKLGFDLDLYVHTSLISMYVQNWRLEDAYKVFDRSSHRDVVSY 133

Query: 255 TTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIR 314
           T +++GYA  GD+ SA KLF+E+P K+ VSW  +I+GY   G  ++ALELF  MM + +R
Sbjct: 134 TALITGYASRGDIRSAQKLFDEIPVKDVVSWNAMISGYAETGCYKEALELFEEMMKMNVR 193

Query: 315 PNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQV 374
           P++ T+ + L ACA   S++ G+QVH ++    F SN  ++++LID+YSKCG +     +
Sbjct: 194 PDESTYVTVLSACAHSGSIELGRQVHSWVDDHGFDSNLKIVNALIDLYSKCGEVETACGL 253

Query: 375 FDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGL 434
           F     K + + WNT+I   T     ++A+ LF +M+RS   P+ +T+  +L AC H G 
Sbjct: 254 FQGLSYK-DVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSVLPACAHLGA 312

Query: 435 VQEGLTYFESMTHDL-GIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNAL 493
           +  G      +   L G+         LI++ A+ G  +        M ++  S  WNA+
Sbjct: 313 IDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSMLHKSLSS-WNAM 371

Query: 494 HGVCRIHGNIDMGRKVVDQL--IDQNPQSSATHGLLSS 529
                +HG  D    +  ++  I   P      GLLS+
Sbjct: 372 IFGFAMHGRADASFDLFSRMRKIGIEPDDITFVGLLSA 409



 Score = 99.8 bits (247), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 80/400 (20%), Positives = 165/400 (41%), Gaps = 68/400 (17%)

Query: 31  GQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFL 90
           G   EA+   + + +  +R    T   +L  CA S S++LG++VH  +           +
Sbjct: 175 GCYKEALELFEEMMKMNVRPDESTYVTVLSACAHSGSIELGRQVHSWVD-DHGFDSNLKI 233

Query: 91  SNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDV 150
            N LI +Y KCG    A  +F  +  K++ S+N ++ GY ++ + K A  LF  M     
Sbjct: 234 VNALIDLYSKCGEVETACGLFQGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEM----- 288

Query: 151 VSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQ 210
                      +SG                   N+ +   +L  C  L  + + R +H  
Sbjct: 289 ----------LRSGETP----------------NDVTMLSVLPACAHLGAIDIGRWIHVY 322

Query: 211 V--LVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDME 268
           +   + G  +   + +S++D YAKCG++  A ++F+    + + +W  M+ G+A      
Sbjct: 323 IDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSMLHKSLSSWNAMIFGFA------ 376

Query: 269 SASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACA 328
                                     +G    + +LF+RM  + I P+  TF   L AC+
Sbjct: 377 -------------------------MHGRADASFDLFSRMRKIGIEPDDITFVGLLSACS 411

Query: 329 SIVSLKHGKQVHGFLIRTNFRSNTIV-MSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLW 387
               L  G+ +   + +    +  +     +ID+    G   +  ++ +  + + + ++W
Sbjct: 412 HSGMLDLGRHIFRSMTQDYKMTPKLEHYGCMIDLLGHSGLFKEAEEMINTMEMEPDGVIW 471

Query: 388 NTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILN 427
            +++ A   HG  E A     ++++  ++P+  +  ++L+
Sbjct: 472 CSLLKACKMHGNVELAESFAQNLIK--IEPENPSSYILLS 509


>gi|297838665|ref|XP_002887214.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297333055|gb|EFH63473.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 740

 Score =  315 bits (808), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 178/581 (30%), Positives = 310/581 (53%), Gaps = 38/581 (6%)

Query: 11  NRKNLPNNCLIQSFLSLISKGQLSEAISSLD-LLAQRGIRLPAETLAFILQQCAESKSLK 69
           +R  +  N LI+ + SL   G +  A+ + + ++      L   TL  +L+  + +  + 
Sbjct: 97  DRDGVTWNVLIEGY-SL--SGLVGAAVKAYNTMMKDFSSNLTRVTLMTMLKLSSSNGHVS 153

Query: 70  LGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGY 129
           LGK++H  + +         + + L+ MY K G   DA+KVF  +  +N   YN ++ G 
Sbjct: 154 LGKQIHGQV-IKLGFESYLLVGSPLLDMYSKVGCISDAKKVFYGLDDRNTVMYNTLMGGL 212

Query: 130 ANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFA 189
              GM++ A  LF  M E+D VSW+ MI G A++G  +E ++ ++ ++   +  +++ F 
Sbjct: 213 LACGMIEDALQLFRGM-EKDSVSWSAMIKGLAQNGMEKEAIECFREMKIEGLKMDQYPFG 271

Query: 190 GILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDAR 249
            +L  C  L  +   RQ+H  ++ T    ++ + S+++D Y KC  L  A+ +FD     
Sbjct: 272 SVLPACGGLGAINDGRQIHACIIRTNLQDHIYVGSALIDMYCKCKCLHYAKTVFDR---- 327

Query: 250 DVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMM 309
                                      M +KN VSWT ++ GY + G   +A+++F  M 
Sbjct: 328 ---------------------------MKQKNVVSWTAMVVGYGQTGRAGEAVKIFLDMQ 360

Query: 310 ILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLN 369
              I P+ +T    + ACA+I SL+ G Q HG  I         V +SL+ +Y KCG ++
Sbjct: 361 RSGIDPDHYTLGQAISACANISSLEEGSQFHGKAITAGLIHYITVSNSLVTLYGKCGDID 420

Query: 370 DGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNAC 429
           D  ++F+   N  + + W  M+SA  Q G   +AI+LF  MV+  +KPD +TL  +++AC
Sbjct: 421 DSTRLFNEM-NVRDEVSWTAMVSAYAQFGRAVEAIQLFDKMVQLGLKPDGVTLTGVISAC 479

Query: 430 THSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYL 489
           + +GLV++G  YFE M ++ GI+P+  H++C+I+L +++G  ++ M  +  MP+  D+  
Sbjct: 480 SRAGLVEKGQRYFELMINEYGIVPSNGHYSCMIDLFSRSGRIEEAMGFINGMPFRPDAIG 539

Query: 490 WNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINE 549
           W  L   CR  GN+++G+   + LI+ +P   A + LLSSIY++ GK   V ++R+ + E
Sbjct: 540 WTTLLSACRNKGNLEIGKWAAESLIELDPHHPAGYTLLSSIYASKGKWDCVAQLRRGMKE 599

Query: 550 RQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQL 590
           +  +KE   SWI+ + K+H+FS  D   P  D +Y+ LE+L
Sbjct: 600 KNVRKEPGQSWIKWKGKLHSFSADDESSPYSDQIYAKLEEL 640



 Score =  257 bits (656), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 156/496 (31%), Positives = 261/496 (52%), Gaps = 12/496 (2%)

Query: 59  LQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKN 118
           ++QC    + +  K +H ++ +     P TFL N+++  Y    S + AR+VFD IP  N
Sbjct: 10  IKQCIGLGASRHVKMIHGNI-IRTLPHPETFLHNNIVHAYALIRSSIYARRVFDGIPQPN 68

Query: 119 LFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYK-VLR 177
           LFS+NN+L  Y+  G +      F+ + +RD V+WN +I GY+ SG V   +K Y  +++
Sbjct: 69  LFSWNNLLLAYSKSGHLSEMERTFEKLPDRDGVTWNVLIEGYSLSGLVGAAVKAYNTMMK 128

Query: 178 RFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELS 237
            FS +    +   +L +      + L +Q+HGQV+  GF S +++ S ++D Y+K G +S
Sbjct: 129 DFSSNLTRVTLMTMLKLSSSNGHVSLGKQIHGQVIKLGFESYLLVGSPLLDMYSKVGCIS 188

Query: 238 DARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGL 297
           DA+++F   D R+ + + T++ G    G +E A +LF  M EK+ VSW+ +I G  +NG+
Sbjct: 189 DAKKVFYGLDDRNTVMYNTLMGGLLACGMIEDALQLFRGM-EKDSVSWSAMIKGLAQNGM 247

Query: 298 GQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSS 357
            ++A+E F  M I  ++ +Q+ F S L AC  + ++  G+Q+H  +IRTN + +  V S+
Sbjct: 248 EKEAIECFREMKIEGLKMDQYPFGSVLPACGGLGAINDGRQIHACIIRTNLQDHIYVGSA 307

Query: 358 LIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKP 417
           LIDMY KC CL+  + VFD    K N + W  M+    Q G   +A+++F DM RS + P
Sbjct: 308 LIDMYCKCKCLHYAKTVFDRMKQK-NVVSWTAMVVGYGQTGRAGEAVKIFLDMQRSGIDP 366

Query: 418 DKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQ 477
           D  TL   ++AC +   ++EG + F       G+I        L+ L  + G  D     
Sbjct: 367 DHYTLGQAISACANISSLEEG-SQFHGKAITAGLIHYITVSNSLVTLYGKCGDIDDSTRL 425

Query: 478 LEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKG 537
             +M    D   W A+       G      ++ D+++    +       L+ + SA  + 
Sbjct: 426 FNEMNVR-DEVSWTAMVSAYAQFGRAVEAIQLFDKMVQLGLKPDGV--TLTGVISACSRA 482

Query: 538 RLVEKVRQ----LINE 549
            LVEK ++    +INE
Sbjct: 483 GLVEKGQRYFELMINE 498



 Score =  125 bits (313), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 90/372 (24%), Positives = 169/372 (45%), Gaps = 47/372 (12%)

Query: 8   RGINRKNLPNNCLIQSFLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKS 67
           RG+ + ++  + +I+    L   G   EAI     +   G+++       +L  C    +
Sbjct: 226 RGMEKDSVSWSAMIKG---LAQNGMEKEAIECFREMKIEGLKMDQYPFGSVLPACGGLGA 282

Query: 68  LKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLS 127
           +  G+++H  +  T  +    ++ + LI MY KC     A+ VFD++  KN+ S+  M+ 
Sbjct: 283 INDGRQIHACIIRTNLQD-HIYVGSALIDMYCKCKCLHYAKTVFDRMKQKNVVSWTAMVV 341

Query: 128 GYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFS 187
           G                               Y ++G   E +K +  ++R  I  + ++
Sbjct: 342 G-------------------------------YGQTGRAGEAVKIFLDMQRSGIDPDHYT 370

Query: 188 FAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETD 247
               ++ C  +  L+   Q HG+ +  G +  + +S+S+V  Y KCG++ D+ RLF+E +
Sbjct: 371 LGQAISACANISSLEEGSQFHGKAITAGLIHYITVSNSLVTLYGKCGDIDDSTRLFNEMN 430

Query: 248 ARDVLTWTTMVSGYAKLGDMESASKLFNEMPE----KNPVSWTTLIAGYTRNGLGQKALE 303
            RD ++WT MVS YA+ G    A +LF++M +     + V+ T +I+  +R GL +K   
Sbjct: 431 VRDEVSWTAMVSAYAQFGRAVEAIQLFDKMVQLGLKPDGVTLTGVISACSRAGLVEKGQR 490

Query: 304 LFTRMM-ILRIRPNQHTFSSCLCACASIVSLKHGK--QVHGFLIRTNFRSNTIVMSSLID 360
            F  M+    I P+   +S     C   +  + G+  +  GF+    FR + I  ++L+ 
Sbjct: 491 YFELMINEYGIVPSNGHYS-----CMIDLFSRSGRIEEAMGFINGMPFRPDAIGWTTLLS 545

Query: 361 MYSKCGCLNDGR 372
                G L  G+
Sbjct: 546 ACRNKGNLEIGK 557



 Score = 45.4 bits (106), Expect = 0.078,   Method: Compositional matrix adjust.
 Identities = 46/203 (22%), Positives = 91/203 (44%), Gaps = 12/203 (5%)

Query: 320 FSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTD 379
           +S+ +  C  + + +H K +HG +IRT     T + ++++  Y+        R+VFD   
Sbjct: 6   YSAQIKQCIGLGASRHVKMIHGNIIRTLPHPETFLHNNIVHAYALIRSSIYARRVFDGIP 65

Query: 380 NKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDK--ITLAVILNACTHSGLVQE 437
            + N   WN ++ A ++ G+  +  R F  +      PD+  +T  V++   + SGLV  
Sbjct: 66  -QPNLFSWNNLLLAYSKSGHLSEMERTFEKL------PDRDGVTWNVLIEGYSLSGLVGA 118

Query: 438 GLTYFESMTHDLGIIPNQEHHACLIELLAQAG---CSDQLMNQLEKMPYEHDSYLWNALH 494
            +  + +M  D      +     +++L +  G      Q+  Q+ K+ +E    + + L 
Sbjct: 119 AVKAYNTMMKDFSSNLTRVTLMTMLKLSSSNGHVSLGKQIHGQVIKLGFESYLLVGSPLL 178

Query: 495 GVCRIHGNIDMGRKVVDQLIDQN 517
            +    G I   +KV   L D+N
Sbjct: 179 DMYSKVGCISDAKKVFYGLDDRN 201


>gi|297833170|ref|XP_002884467.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297330307|gb|EFH60726.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 657

 Score =  315 bits (807), Expect = 4e-83,   Method: Compositional matrix adjust.
 Identities = 166/489 (33%), Positives = 276/489 (56%), Gaps = 7/489 (1%)

Query: 120 FSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRF 179
           + +N+++  Y  LG +  A  +F  M + DV S+N MI+GYAK G   E L+ Y  +   
Sbjct: 166 YLWNSLVKFYMELGSLGFAEKVFAIMPQPDVSSFNVMIVGYAKQGFGLEALELYYKMVSD 225

Query: 180 SISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTG--FLSNVVISSSIVDAYAKCGELS 237
            I  +E++  G+L  C  L +++L + VHG +   G  + SN+++ ++++D Y KC E  
Sbjct: 226 GIEPDEYTLLGLLVCCGHLSDIRLGKGVHGWIERRGPVYSSNLILRNALLDMYFKCKESG 285

Query: 238 DARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGL 297
            A+R FD    +D+ +W TMV G+ +LGDME+A  +F++MP+++ VSW +L+  Y++ G 
Sbjct: 286 LAKRAFDALKKKDMRSWNTMVVGFVRLGDMEAAQAVFDQMPQRDLVSWNSLLFCYSKKGC 345

Query: 298 GQKAL-ELFTRMMIL-RIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVM 355
            Q+A+ ELF  M+I+ +++P++ T  S +   A+   L HG+ VHG +IR     +  + 
Sbjct: 346 DQRAVRELFYEMLIVEKVKPDRVTMVSLISGAANNGELSHGRWVHGLMIRLQLEGDAFLS 405

Query: 356 SSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSV 415
           S+LIDMY KCG +     VF  T  +++  LW +MI+    HGY +QA++LF  M    V
Sbjct: 406 SALIDMYCKCGLIERAFMVFK-TATEKDVPLWTSMITGFAFHGYGQQALQLFKRMQEEDV 464

Query: 416 KPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLM 475
            P+K+TL  +L AC+HSGLV+EGL  F  M    G  P  EH+  L++LL +AG  ++  
Sbjct: 465 TPNKVTLLAVLTACSHSGLVEEGLHVFYHMKEKFGFHPETEHYGSLVDLLCRAGRLEEAK 524

Query: 476 NQLE-KMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSAL 534
           + ++ KMP      +W ++   CR   +I+     + +L+   P+    + LLS+IY+ +
Sbjct: 525 DIVQNKMPMRPSQSMWGSILSACREGEDIETAELALSELLKLEPEKEGGYVLLSNIYATV 584

Query: 535 GKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSL-HPMRDVLYSVLEQLAGQ 593
           G+    +K R+ +  R  KK    S +     VH+F  ++   HP    +  +L+ L  +
Sbjct: 585 GRWGYSDKTREAMESRGVKKTAGYSSVVGVEGVHSFVAAEKQNHPRWTEIKRILQHLHNE 644

Query: 594 MGEDAPSLD 602
           M     SLD
Sbjct: 645 MKSKIGSLD 653



 Score =  148 bits (374), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 109/404 (26%), Positives = 190/404 (47%), Gaps = 50/404 (12%)

Query: 35  EAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPT----TFL 90
           EA+     +   GI     TL  +L  C     ++LGK VH      +R+ P       L
Sbjct: 214 EALELYYKMVSDGIEPDEYTLLGLLVCCGHLSDIRLGKGVH---GWIERRGPVYSSNLIL 270

Query: 91  SNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDV 150
            N L+ MYFKC     A++ FD +  K++ S+N M+ G+  LG M+ A+ +FD M +RD+
Sbjct: 271 RNALLDMYFKCKESGLAKRAFDALKKKDMRSWNTMVVGFVRLGDMEAAQAVFDQMPQRDL 330

Query: 151 VSWNTMIIGYAKSGAVEEGLK--FYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVH 208
           VSWN+++  Y+K G  +  ++  FY++L    +  +  +   +++      EL   R VH
Sbjct: 331 VSWNSLLFCYSKKGCDQRAVRELFYEMLIVEKVKPDRVTMVSLISGAANNGELSHGRWVH 390

Query: 209 GQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDME 268
           G ++      +  +SS+++D Y KCG +  A  +F     +DV  WT+M++G+A      
Sbjct: 391 GLMIRLQLEGDAFLSSALIDMYCKCGLIERAFMVFKTATEKDVPLWTSMITGFA------ 444

Query: 269 SASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACA 328
                                 GY     GQ+AL+LF RM    + PN+ T  + L AC+
Sbjct: 445 --------------------FHGY-----GQQALQLFKRMQEEDVTPNKVTLLAVLTACS 479

Query: 329 SIVSLKHGKQVHGFLI-RTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNK----EN 383
               ++ G  V   +  +  F   T    SL+D+  + G L + +   D+  NK     +
Sbjct: 480 HSGLVEEGLHVFYHMKEKFGFHPETEHYGSLVDLLCRAGRLEEAK---DIVQNKMPMRPS 536

Query: 384 SMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILN 427
             +W +++SA  +    E A     ++++  ++P+K    V+L+
Sbjct: 537 QSMWGSILSACREGEDIETAELALSELLK--LEPEKEGGYVLLS 578


>gi|359482115|ref|XP_003632713.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Vitis vinifera]
          Length = 989

 Score =  315 bits (807), Expect = 4e-83,   Method: Compositional matrix adjust.
 Identities = 173/577 (29%), Positives = 299/577 (51%), Gaps = 75/577 (12%)

Query: 27  LISKGQLSEAISSLDLLAQRGIR--LPAE-TLAFILQQCAESKSLKLGKRVHLHLKLTQR 83
           L++ GQL     S  +  Q  I   +P + T   IL+ C    +L LG+++H  +     
Sbjct: 387 LVAYGQLGNLSESYWIFLQMQIEGLMPNQYTYPSILRTCTSLGALDLGEQIHTQVI---- 442

Query: 84  KTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFD 143
           K+   F                            N++  + ++  YA  G +  AR +  
Sbjct: 443 KSGFQF----------------------------NVYVCSVLIDMYAKHGELDTARGILQ 474

Query: 144 NMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKL 203
            + E DVVSW  MI GY +     E LK ++ +    I  +   F+  ++ C  ++ L  
Sbjct: 475 RLREEDVVSWTAMIAGYTQHDLFAEALKLFQEMENQGIRSDNIGFSSAISACAGIQALNQ 534

Query: 204 TRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAK 263
            +Q+H Q  ++G+  ++ I +++V  YA+C                              
Sbjct: 535 GQQIHAQSYISGYSEDLSIGNALVSLYARC------------------------------ 564

Query: 264 LGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSC 323
            G  + A   F ++  K+ +SW  LI+G+ ++G  ++AL++F++M    +  N  TF S 
Sbjct: 565 -GRAQDAYLAFEKIDAKDNISWNALISGFAQSGHCEEALQVFSQMNQAGVEANLFTFGSA 623

Query: 324 LCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDG-RQVFDLTDNKE 382
           + A A+  ++K GKQ+H  +I+T + S T   + LI +YSKCG + D  R+ F++ +  +
Sbjct: 624 VSATANTANIKQGKQIHAMMIKTGYDSETEASNVLITLYSKCGSIEDAKREFFEMPE--K 681

Query: 383 NSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYF 442
           N + WN MI+  +QHGY  +A+ LF +M +  + P+ +T   +L+AC+H GLV EGL+YF
Sbjct: 682 NVVSWNAMITGYSQHGYGSEAVSLFEEMKQLGLMPNHVTFVGVLSACSHVGLVNEGLSYF 741

Query: 443 ESMTHDLGIIPNQEHHACLIELLAQAG---CSDQLMNQLEKMPYEHDSYLWNALHGVCRI 499
            SM+ + G++P  EH+ C+++LL +A    C+ +    +E+MP E D+ +W  L   C +
Sbjct: 742 RSMSKEHGLVPKPEHYVCVVDLLGRAALLCCAREF---IEEMPIEPDAMIWRTLLSACTV 798

Query: 500 HGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAIS 559
           H NI++G      L++  P+ SAT+ LLS++Y+  GK    ++ RQ++ +R  KKE   S
Sbjct: 799 HKNIEIGEFAARHLLELEPEDSATYVLLSNMYAVSGKWDYRDRTRQMMKDRGVKKEPGRS 858

Query: 560 WIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQMGE 596
           WIE++N +HAF V D LHP+ + +Y  ++ L  + GE
Sbjct: 859 WIEVKNSIHAFFVGDRLHPLAEQIYEYIDDLNERAGE 895



 Score =  162 bits (409), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 112/440 (25%), Positives = 197/440 (44%), Gaps = 66/440 (15%)

Query: 54  TLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDK 113
           T+A +L  CA   +   GK++H ++ +    +    +   L+ +Y KC         FD 
Sbjct: 316 TVASLLSACASVGAGYKGKQLHSYV-IKMGMSSDLIIEGSLLDLYVKC---------FD- 364

Query: 114 IPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFY 173
                                ++ A   F      +VV WN M++ Y + G + E    +
Sbjct: 365 ---------------------IETAHEYFLTTETENVVLWNVMLVAYGQLGNLSESYWIF 403

Query: 174 KVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKC 233
             ++   +  N++++  IL  C  L  L L  Q+H QV+ +GF  NV + S ++D YAK 
Sbjct: 404 LQMQIEGLMPNQYTYPSILRTCTSLGALDLGEQIHTQVIKSGFQFNVYVCSVLIDMYAKH 463

Query: 234 GELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYT 293
           GEL  AR +       DV++WT M++GY                               T
Sbjct: 464 GELDTARGILQRLREEDVVSWTAMIAGY-------------------------------T 492

Query: 294 RNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTI 353
           ++ L  +AL+LF  M    IR +   FSS + ACA I +L  G+Q+H     + +  +  
Sbjct: 493 QHDLFAEALKLFQEMENQGIRSDNIGFSSAISACAGIQALNQGQQIHAQSYISGYSEDLS 552

Query: 354 VMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRS 413
           + ++L+ +Y++CG   D    F+  D K+N + WN +IS   Q G+ E+A+++F  M ++
Sbjct: 553 IGNALVSLYARCGRAQDAYLAFEKIDAKDN-ISWNALISGFAQSGHCEEALQVFSQMNQA 611

Query: 414 SVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQ 473
            V+ +  T    ++A  ++  +++G     +M    G     E    LI L ++ G  + 
Sbjct: 612 GVEANLFTFGSAVSATANTANIKQG-KQIHAMMIKTGYDSETEASNVLITLYSKCGSIED 670

Query: 474 LMNQLEKMPYEHDSYLWNAL 493
              +  +MP E +   WNA+
Sbjct: 671 AKREFFEMP-EKNVVSWNAM 689



 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 102/397 (25%), Positives = 182/397 (45%), Gaps = 65/397 (16%)

Query: 43  LAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCG 102
           + +RGIR   +T  ++ + C  S SL   K++H  +           L + LI +Y   G
Sbjct: 1   MEERGIRANVQTYLWLFEGCFNSGSLLDAKKLHARI-FKSGFDGEDVLGSRLIDIYLAHG 59

Query: 103 SDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAK 162
              +A K+FD IP  N+  +N ++SG     +      LF  M   +V            
Sbjct: 60  EVDNAIKLFDDIPSSNVSFWNKVISGLLAKKLASQVLGLFSLMITENVTP---------- 109

Query: 163 SGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEE-LKLTRQVHGQVLVTGFLSNVV 221
                                +E +FA +L  C   +   ++T Q+H +++  GF S+ +
Sbjct: 110 ---------------------DESTFASVLRACSGGKAPFQVTEQIHAKIIHHGFGSSPL 148

Query: 222 ISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKN 281
           + + ++D Y+K G +  A+ +F+    +D ++W  M+S                      
Sbjct: 149 VCNPLIDLYSKNGHVDLAKLVFERLFLKDSVSWVAMIS---------------------- 186

Query: 282 PVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHG 341
                    G ++NG   +A+ LF +M    + P  + FSS L AC  I   K G+Q+HG
Sbjct: 187 ---------GLSQNGREDEAILLFCQMHKSAVIPTPYVFSSVLSACTKIELFKLGEQLHG 237

Query: 342 FLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDE 401
           F+++    S T V ++L+ +YS+ G L    Q+F    ++ + + +N++IS L Q G+ +
Sbjct: 238 FIVKWGLSSETFVCNALVTLYSRWGNLIAAEQIFSKM-HRRDRISYNSLISGLAQRGFSD 296

Query: 402 QAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEG 438
           +A++LF  M    +KPD +T+A +L+AC   G   +G
Sbjct: 297 RALQLFEKMQLDCMKPDCVTVASLLSACASVGAGYKG 333



 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 121/519 (23%), Positives = 234/519 (45%), Gaps = 88/519 (16%)

Query: 9   GINRKNLPNNCLIQSFLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSL 68
           G + +++  + LI  +L+    G++  AI   D +    +    + ++ +L +   S+ L
Sbjct: 40  GFDGEDVLGSRLIDIYLA---HGEVDNAIKLFDDIPSSNVSFWNKVISGLLAKKLASQVL 96

Query: 69  KLGKRVHLHLKLTQRKTP--TTFLSNHLISMYFKCGSDVDARKVFDKIPVKNL------- 119
            L       L +T+  TP  +TF      S+   C       +V ++I  K +       
Sbjct: 97  GL-----FSLMITENVTPDESTF-----ASVLRACSGGKAPFQVTEQIHAKIIHHGFGSS 146

Query: 120 -FSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRR 178
               N ++  Y+  G +  A+ +F+ +  +D VSW  MI G +++G  +E +  +  + +
Sbjct: 147 PLVCNPLIDLYSKNGHVDLAKLVFERLFLKDSVSWVAMISGLSQNGREDEAILLFCQMHK 206

Query: 179 FSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSD 238
            ++    + F+ +L+ C K+E  KL  Q+HG ++  G  S   + +++V  Y++ G L  
Sbjct: 207 SAVIPTPYVFSSVLSACTKIELFKLGEQLHGFIVKWGLSSETFVCNALVTLYSRWGNLIA 266

Query: 239 ARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLG 298
           A ++F +   RD +++ +++SG A+                                G  
Sbjct: 267 AEQIFSKMHRRDRISYNSLISGLAQ-------------------------------RGFS 295

Query: 299 QKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSL 358
            +AL+LF +M +  ++P+  T +S L ACAS+ +   GKQ+H ++I+    S+ I+  SL
Sbjct: 296 DRALQLFEKMQLDCMKPDCVTVASLLSACASVGAGYKGKQLHSYVIKMGMSSDLIIEGSL 355

Query: 359 IDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPD 418
           +D+Y KC  +    + F LT   EN +LWN M+ A  Q G   ++  +F  M    + P+
Sbjct: 356 LDLYVKCFDIETAHEYF-LTTETENVVLWNVMLVAYGQLGNLSESYWIFLQMQIEGLMPN 414

Query: 419 KITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQL 478
           + T   IL  CT  G +            DLG                     +Q+  Q+
Sbjct: 415 QYTYPSILRTCTSLGAL------------DLG---------------------EQIHTQV 441

Query: 479 EKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQN 517
            K  ++ + Y+ + L  +   HG +D  R ++ +L +++
Sbjct: 442 IKSGFQFNVYVCSVLIDMYAKHGELDTARGILQRLREED 480



 Score = 78.6 bits (192), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 49/171 (28%), Positives = 86/171 (50%), Gaps = 8/171 (4%)

Query: 12  RKNLPNNCLIQSFLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLG 71
           + N+  N LI  F      G   EA+     + Q G+     T    +   A + ++K G
Sbjct: 580 KDNISWNALISGF---AQSGHCEEALQVFSQMNQAGVEANLFTFGSAVSATANTANIKQG 636

Query: 72  KRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYAN 131
           K++H  +  T   + T   SN LI++Y KCGS  DA++ F ++P KN+ S+N M++GY+ 
Sbjct: 637 KQIHAMMIKTGYDSETE-ASNVLITLYSKCGSIEDAKREFFEMPEKNVVSWNAMITGYSQ 695

Query: 132 LGMMKHARNLFDNMAERDVVSWNTMIIGYAKS----GAVEEGLKFYKVLRR 178
            G    A +LF+ M +  ++  +   +G   +    G V EGL +++ + +
Sbjct: 696 HGYGSEAVSLFEEMKQLGLMPNHVTFVGVLSACSHVGLVNEGLSYFRSMSK 746


>gi|356519224|ref|XP_003528273.1| PREDICTED: pentatricopeptide repeat-containing protein At5g55740,
           chloroplastic-like [Glycine max]
          Length = 805

 Score =  315 bits (807), Expect = 4e-83,   Method: Compositional matrix adjust.
 Identities = 161/511 (31%), Positives = 280/511 (54%), Gaps = 40/511 (7%)

Query: 123 NNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSIS 182
           +++++ Y  +G+++ A  +F NMA +DVV+WN ++ GYA+ G VE+ L+   V+R   + 
Sbjct: 295 SSIMNFYFKVGLIEEAEVVFRNMAVKDVVTWNLVVAGYAQFGMVEKALEMCCVMREEGLR 354

Query: 183 CNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRL 242
            +  + + +L +     +L L  + H   +   F  +VV+SS I+D YAKCG +  ARR+
Sbjct: 355 FDCVTLSALLAVAADTRDLVLGMKAHAYCVKNDFEGDVVVSSGIIDMYAKCGRMDCARRV 414

Query: 243 FDETDARDVLTWTTMVS-----------------------------------GYAKLGDM 267
           F     +D++ W TM++                                   G+ K G +
Sbjct: 415 FSCVRKKDIVLWNTMLAACAEQGLSGEALKLFFQMQLESVPPNVVSWNSLIFGFFKNGQV 474

Query: 268 ESASKLFNEMPEK----NPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSC 323
             A  +F EM       N ++WTT+++G  +NG G  A+ +F  M  + IRPN  + +S 
Sbjct: 475 AEARNMFAEMCSSGVMPNLITWTTMMSGLVQNGFGSGAMMVFREMQDVGIRPNSMSITSA 534

Query: 324 LCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKEN 383
           L  C S+  LKHG+ +HG+++R +   +  +++S++DMY+KCG L+  + VF +   KE 
Sbjct: 535 LSGCTSMALLKHGRAIHGYVMRRDLSQSIHIITSIMDMYAKCGSLDGAKCVFKMCSTKE- 593

Query: 384 SMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFE 443
             ++N MISA   HG   +A+ LF  M +  + PD ITL  +L+AC+H GL++EG+  F+
Sbjct: 594 LYVYNAMISAYASHGQAREALVLFKQMEKEGIVPDHITLTSVLSACSHGGLMKEGIKVFK 653

Query: 444 SMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNI 503
            M  +L + P++EH+ CL++LLA  G  D+ +  +  MP   D+++  +L   C  + +I
Sbjct: 654 YMVSELQMKPSEEHYGCLVKLLANDGQLDEALRTILTMPSHPDAHILGSLLTACGQNNDI 713

Query: 504 DMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEI 563
           ++   +   L+  +P +S  +  LS++Y+A+GK   V  +R L+ E+  +K    SWIE+
Sbjct: 714 ELADYIAKWLLKLDPDNSGNYVALSNVYAAVGKWDKVSNLRGLMKEKGLRKIPGCSWIEV 773

Query: 564 ENKVHAFSVSDSLHPMRDVLYSVLEQLAGQM 594
             ++H F  SD  HP  + +Y  L+ L  +M
Sbjct: 774 GQELHVFIASDRSHPKTEEIYVTLDLLGFEM 804



 Score =  178 bits (451), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 121/451 (26%), Positives = 202/451 (44%), Gaps = 64/451 (14%)

Query: 31  GQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFL 90
           G   EA+     + Q G+      L  +L+ C   K ++ GK VH  +  T       ++
Sbjct: 133 GFCEEALFGYIKMQQDGLPPDNFVLPNVLKACGVLKWVRFGKGVHAFVVKTIGLKECVYV 192

Query: 91  SNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDV 150
           +  L+ MY KCG+  DA KVF                               D M+ER+ 
Sbjct: 193 ATSLVDMYGKCGAVEDAGKVF-------------------------------DEMSERND 221

Query: 151 VSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQ 210
           V+WN+M++ YA++G  +E ++ ++ +R   +     + +G  T C   E +   RQ HG 
Sbjct: 222 VTWNSMVVTYAQNGMNQEAIRVFREMRLQGVEVTLVALSGFFTACANSEAVGEGRQGHGL 281

Query: 211 VLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESA 270
            +V G   + V+ SSI++ Y K G + +A  +F     +DV+TW  +V+GYA+ G +E  
Sbjct: 282 AVVGGLELDNVLGSSIMNFYFKVGLIEEAEVVFRNMAVKDVVTWNLVVAGYAQFGMVE-- 339

Query: 271 SKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASI 330
                                        KALE+   M    +R +  T S+ L   A  
Sbjct: 340 -----------------------------KALEMCCVMREEGLRFDCVTLSALLAVAADT 370

Query: 331 VSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTM 390
             L  G + H + ++ +F  + +V S +IDMY+KCG ++  R+VF     K++ +LWNTM
Sbjct: 371 RDLVLGMKAHAYCVKNDFEGDVVVSSGIIDMYAKCGRMDCARRVFSCV-RKKDIVLWNTM 429

Query: 391 ISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLG 450
           ++A  + G   +A++LF  M   SV P+ ++   ++     +G V E    F  M    G
Sbjct: 430 LAACAEQGLSGEALKLFFQMQLESVPPNVVSWNSLIFGFFKNGQVAEARNMFAEMCSS-G 488

Query: 451 IIPNQEHHACLIELLAQAGCSDQLMNQLEKM 481
           ++PN      ++  L Q G     M    +M
Sbjct: 489 VMPNLITWTTMMSGLVQNGFGSGAMMVFREM 519



 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 117/508 (23%), Positives = 211/508 (41%), Gaps = 107/508 (21%)

Query: 16  PNNCLIQSFLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVH 75
           PN   +  F SL   G++ EA++SL  +    + +       +LQ C   ++L L   + 
Sbjct: 15  PNQFSLTHFSSLCKHGRIREAVNSLTQMHSLNLHVGPAIYGTLLQGCVYERALPLA--LQ 72

Query: 76  LHLKLTQRKTPTTFLSNHLIS----MYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYAN 131
           LH  + +R  PT  L++ +IS    +Y KCG+   A ++F   P  N             
Sbjct: 73  LHADVIKRG-PTFALNDFVISKLVILYAKCGASEPATRLFRDSPSPN------------- 118

Query: 132 LGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGI 191
                             V SW  +I  + ++G  EE L  Y  +++  +  + F    +
Sbjct: 119 ------------------VFSWAAIIGLHTRTGFCEEALFGYIKMQQDGLPPDNFVLPNV 160

Query: 192 LTICVKLEELKLTRQVHGQVLVT-GFLSNVVISSSIVDAYAKCGELSDARRLFDETDARD 250
           L  C  L+ ++  + VH  V+ T G    V +++S+VD Y KC                 
Sbjct: 161 LKACGVLKWVRFGKGVHAFVVKTIGLKECVYVATSLVDMYGKC----------------- 203

Query: 251 VLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMI 310
                         G +E A K+F+EM E+N V+W +++  Y +NG+ Q+A+ +F  M +
Sbjct: 204 --------------GAVEDAGKVFDEMSERNDVTWNSMVVTYAQNGMNQEAIRVFREMRL 249

Query: 311 LRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLND 370
             +       S    ACA+  ++  G+Q HG  +      + ++ SS+++ Y K G + +
Sbjct: 250 QGVEVTLVALSGFFTACANSEAVGEGRQGHGLAVVGGLELDNVLGSSIMNFYFKVGLIEE 309

Query: 371 GRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACT 430
              VF     K+  + WN +++   Q G  E+A+ +   M    ++ D +TL+ +L    
Sbjct: 310 AEVVFRNMAVKD-VVTWNLVVAGYAQFGMVEKALEMCCVMREEGLRFDCVTLSALLAVAA 368

Query: 431 HSGLVQEGLTYFESMTHDLGIIPNQEHHAC--------------LIELLAQAG---CSDQ 473
                          T DL ++  + H  C              +I++ A+ G   C+ +
Sbjct: 369 D--------------TRDL-VLGMKAHAYCVKNDFEGDVVVSSGIIDMYAKCGRMDCARR 413

Query: 474 LMNQLEKMPYEHDSYLWNALHGVCRIHG 501
           + + + K     D  LWN +   C   G
Sbjct: 414 VFSCVRK----KDIVLWNTMLAACAEQG 437


>gi|188509949|gb|ACD56635.1| putative pentatricopeptide repeat protein [Gossypium raimondii]
          Length = 667

 Score =  315 bits (807), Expect = 4e-83,   Method: Compositional matrix adjust.
 Identities = 172/575 (29%), Positives = 308/575 (53%), Gaps = 71/575 (12%)

Query: 94  LISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKH---------------- 137
           L+S Y  CG   + R+VFD +  KN++ +N M+S YA +G  K                 
Sbjct: 2   LVSFYATCGDLKEGRRVFDTMEKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKGIEGK 61

Query: 138 ----ARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILT 193
               A  LFD + +RDV+SWN+MI GY  +G  E GL  YK +    I  +  +   +L 
Sbjct: 62  RSESASELFDKLCDRDVISWNSMISGYVSNGLTERGLGIYKQMMYLGIDVDLATIISVLV 121

Query: 194 ICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLT 253
            C K   L L + VH   + + F   +  S++++D Y+KCG+L  A R+F++   R+V++
Sbjct: 122 GCAKSGTLSLGKAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVS 181

Query: 254 WTTMVSGYAKLGDMESASKLFNEMPEK----NPVSWTTLIAG------------------ 291
           WT+M++GY + G  + A  L  +M ++    + V+ T+++                    
Sbjct: 182 WTSMIAGYTRDGWSDGAIILLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHDYIK 241

Query: 292 -----------------YTRNGLGQKALELFTRM----------MILRIRPNQHTFSSCL 324
                            Y + G  + A  +F+ M          M+  ++P+  T +  L
Sbjct: 242 ANNMASNLFVCNALMDMYAKCGSMEGANSVFSTMVVKDIISWNTMVGELKPDSRTMACIL 301

Query: 325 CACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENS 384
            ACAS+ +L+ GK++HG+++R  + S+  V ++L+D+Y KCG L   R +FD+  +K+  
Sbjct: 302 PACASLSALERGKEIHGYILRNGYSSDRHVANALVDLYVKCGVLGLARLLFDMIPSKD-L 360

Query: 385 MLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFES 444
           + W  MI+    HGY  +AI  F++M  + ++PD+++   IL AC+HSGL+++G  +F  
Sbjct: 361 VSWTVMIAGYGMHGYGNEAIATFNEMRDAGIEPDEVSFISILYACSHSGLLEQGWRFFYI 420

Query: 445 MTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNID 504
           M +D  I P  EH+AC+++LL++ G   +    +E +P   D+ +W AL   CRI+ +I+
Sbjct: 421 MKNDFNIEPKLEHYACMVDLLSRTGNLSKAYKFIETLPIAPDATIWGALLCGCRIYHDIE 480

Query: 505 MGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIE 564
           +  KV +++ +  P+++  + LL++IY+   K   V+++R+ I ++  +K    SWIEI+
Sbjct: 481 LAEKVAERVFELEPENTGYYVLLANIYAEAEKWEEVKRMREKIGKKGLRKNPGCSWIEIK 540

Query: 565 NKVHAF-SVSDSLHPMRDVLYSVLEQLAGQMGEDA 598
            +V+ F S ++S HP    + S+L+++  +M E+ 
Sbjct: 541 GRVNLFVSGNNSSHPHSKKIESLLKKMRRKMKEEG 575



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 101/451 (22%), Positives = 190/451 (42%), Gaps = 97/451 (21%)

Query: 11  NRKNLPNNCLIQSFLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKL 70
           +R  +  N +I  +   +S G     +     +   GI +   T+  +L  CA+S +L L
Sbjct: 75  DRDVISWNSMISGY---VSNGLTERGLGIYKQMMYLGIDVDLATIISVLVGCAKSGTLSL 131

Query: 71  GKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYA 130
           GK VH  L +          SN L+ MY KCG    A +VF+K+  +N+ S+ +M++GY 
Sbjct: 132 GKAVH-SLAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYT 190

Query: 131 NLGMMKHARNLFDNMAER----DVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEF 186
             G    A  L   M +     DVV+  +++   A+SG+++ G   +  ++  +++ N F
Sbjct: 191 RDGWSDGAIILLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHDYIKANNMASNLF 250

Query: 187 ---------------------------------------------SFAGILTICVKLEEL 201
                                                        + A IL  C  L  L
Sbjct: 251 VCNALMDMYAKCGSMEGANSVFSTMVVKDIISWNTMVGELKPDSRTMACILPACASLSAL 310

Query: 202 KLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGY 261
           +  +++HG +L  G+ S+  +++++VD Y KCG L  AR LFD   ++D+++WT M++GY
Sbjct: 311 ERGKEIHGYILRNGYSSDRHVANALVDLYVKCGVLGLARLLFDMIPSKDLVSWTVMIAGY 370

Query: 262 AKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFS 321
                                            +G G +A+  F  M    I P++ +F 
Sbjct: 371 G-------------------------------MHGYGNEAIATFNEMRDAGIEPDEVSFI 399

Query: 322 SCLCACASIVSLKHGKQVHGFLIRTNFRSNTIV--MSSLIDMYSKCGCLNDGRQVFDLTD 379
           S L AC+    L+ G +   ++++ +F     +   + ++D+ S+ G L+   +  +   
Sbjct: 400 SILYACSHSGLLEQGWRFF-YIMKNDFNIEPKLEHYACMVDLLSRTGNLSKAYKFIETLP 458

Query: 380 NKENSMLWNTMISALTQHGYDEQAIRLFHDM 410
              ++ +W  ++             R++HD+
Sbjct: 459 IAPDATIWGALLC----------GCRIYHDI 479


>gi|15220808|ref|NP_173207.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75175206|sp|Q9LNP2.1|PPR47_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At1g17630
 gi|8778465|gb|AAF79473.1|AC022492_17 F1L3.33 [Arabidopsis thaliana]
 gi|332191495|gb|AEE29616.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 731

 Score =  315 bits (807), Expect = 5e-83,   Method: Compositional matrix adjust.
 Identities = 177/589 (30%), Positives = 311/589 (52%), Gaps = 14/589 (2%)

Query: 28  ISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPT 87
           +S G    A+     + QRG+      L  IL+ C       L +  H  +     K   
Sbjct: 134 VSHGLYENALELYRGMRQRGLTGDGYILPLILRACRYLGRFGLCRAFHTQVIQIGLK-EN 192

Query: 88  TFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAE 147
             + N L+++Y K G   DA  +F ++PV+N  S+N M+ G++     + A  +F+ M  
Sbjct: 193 LHVVNELLTLYPKAGRMGDAYNLFVEMPVRNRMSWNVMIKGFSQEYDCESAVKIFEWMQR 252

Query: 148 R----DVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKL 203
                D V+W +++  +++ G  E+ LK++ ++R    + +  + A   ++C +LE L +
Sbjct: 253 EEFKPDEVTWTSVLSCHSQCGKFEDVLKYFHLMRMSGNAVSGEALAVFFSVCAELEALSI 312

Query: 204 TRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAK 263
             +VHG V+  GF   +   ++++  Y K G++ DA  LF +   + + +W ++++ +  
Sbjct: 313 AEKVHGYVIKGGFEEYLPSRNALIHVYGKQGKVKDAEHLFRQIRNKGIESWNSLITSFVD 372

Query: 264 LGDMESASKLFNEMPE--------KNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRP 315
            G ++ A  LF+E+ E         N V+WT++I G    G G  +LE F +M   ++  
Sbjct: 373 AGKLDEALSLFSELEEMNHVCNVKANVVTWTSVIKGCNVQGRGDDSLEYFRQMQFSKVLA 432

Query: 316 NQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVF 375
           N  T    L  CA + +L  G+++HG +IRT+   N +V ++L++MY+KCG L++G  VF
Sbjct: 433 NSVTICCILSICAELPALNLGREIHGHVIRTSMSENILVQNALVNMYAKCGLLSEGSLVF 492

Query: 376 DLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLV 435
           +   +K+  + WN++I     HG+ E+A+ +F  M+ S   PD I L  +L+AC+H+GLV
Sbjct: 493 EAIRDKD-LISWNSIIKGYGMHGFAEKALSMFDRMISSGFHPDGIALVAVLSACSHAGLV 551

Query: 436 QEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHG 495
           ++G   F SM+   G+ P QEH+AC+++LL + G   +    ++ MP E    +  AL  
Sbjct: 552 EKGREIFYSMSKRFGLEPQQEHYACIVDLLGRVGFLKEASEIVKNMPMEPKVCVLGALLN 611

Query: 496 VCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKE 555
            CR+H N+D+   +  QL    P+ + ++ LLS+IYSA G+      VR L  ++  KK 
Sbjct: 612 SCRMHKNVDIAEGIASQLSVLEPERTGSYMLLSNIYSAGGRWEESANVRALAKKKDLKKV 671

Query: 556 QAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQMGEDAPSLDAD 604
              SWIE++ K + FS    +    + +Y VLE L   M +  P+ D +
Sbjct: 672 SGSSWIEVKKKKYKFSSGSIVQSEFETIYPVLEDLVSHMLKKGPTHDGN 720



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 91/355 (25%), Positives = 174/355 (49%), Gaps = 13/355 (3%)

Query: 124 NMLSGYANLGMMKHARNLFDNMAE---RDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFS 180
           N++S YA LG++  ARN+F+ ++     D+  WN+++      G  E  L+ Y+ +R+  
Sbjct: 94  NLISVYARLGLLLDARNVFETVSLVLLSDLRLWNSILKANVSHGLYENALELYRGMRQRG 153

Query: 181 ISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDAR 240
           ++ + +    IL  C  L    L R  H QV+  G   N+ + + ++  Y K G + DA 
Sbjct: 154 LTGDGYILPLILRACRYLGRFGLCRAFHTQVIQIGLKENLHVVNELLTLYPKAGRMGDAY 213

Query: 241 RLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEK----NPVSWTTLIAGYTRNG 296
            LF E   R+ ++W  M+ G+++  D ESA K+F  M  +    + V+WT++++ +++ G
Sbjct: 214 NLFVEMPVRNRMSWNVMIKGFSQEYDCESAVKIFEWMQREEFKPDEVTWTSVLSCHSQCG 273

Query: 297 LGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMS 356
             +  L+ F  M +     +    +     CA + +L   ++VHG++I+  F       +
Sbjct: 274 KFEDVLKYFHLMRMSGNAVSGEALAVFFSVCAELEALSIAEKVHGYVIKGGFEEYLPSRN 333

Query: 357 SLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVR---- 412
           +LI +Y K G + D   +F    NK     WN++I++    G  ++A+ LF ++      
Sbjct: 334 ALIHVYGKQGKVKDAEHLFRQIRNKGIES-WNSLITSFVDAGKLDEALSLFSELEEMNHV 392

Query: 413 SSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQ 467
            +VK + +T   ++  C   G   + L YF  M     ++ N     C++ + A+
Sbjct: 393 CNVKANVVTWTSVIKGCNVQGRGDDSLEYFRQMQFS-KVLANSVTICCILSICAE 446


>gi|414587344|tpg|DAA37915.1| TPA: hypothetical protein ZEAMMB73_465451 [Zea mays]
 gi|414587345|tpg|DAA37916.1| TPA: hypothetical protein ZEAMMB73_465451 [Zea mays]
          Length = 920

 Score =  315 bits (807), Expect = 5e-83,   Method: Compositional matrix adjust.
 Identities = 175/569 (30%), Positives = 297/569 (52%), Gaps = 67/569 (11%)

Query: 25  LSLISKGQLSEAISSLDLLAQ---RGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLT 81
           L L++ GQ+S+   S ++  Q    GI     T   IL+ C  +  ++LG+++H  L + 
Sbjct: 316 LMLVAYGQISDLAKSFEIFGQMQATGIHPNQFTYPCILRTCTCTGQIELGEQIH-SLSIK 374

Query: 82  QRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNL 141
                  ++S  LI MY K                                G +  AR +
Sbjct: 375 NGFESDMYVSGVLIDMYSK-------------------------------YGCLDKARKI 403

Query: 142 FDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEEL 201
            + + +RDVVSW +MI GY +    EE L  +K ++   +  +    A   + C  ++ +
Sbjct: 404 LEMLEKRDVVSWTSMIAGYVQHDFCEEALATFKEMQDCGVWPDNIGLASAASACAGIKAM 463

Query: 202 KLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGY 261
           +   Q+H +V V+G+                               A D+  W T+V+ Y
Sbjct: 464 RQGLQIHARVYVSGY-------------------------------AADISIWNTLVNLY 492

Query: 262 AKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFS 321
           A+ G  E A  LF E+  K+ ++W  LI+G+ ++ L ++AL +F +M     + N  TF 
Sbjct: 493 ARCGRSEEAFSLFREIEHKDEITWNGLISGFGQSRLYKQALMVFMKMGQAGAKYNVFTFI 552

Query: 322 SCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNK 381
           S + A A++  +K GKQVHG  ++T   S T V ++LI +Y KCG + D + +F     +
Sbjct: 553 SAISALANLADIKQGKQVHGRAVKTGHTSETEVANALISLYGKCGSIEDAKMIFSEMSLR 612

Query: 382 ENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTY 441
            N + WNT+I++ +QHG   +A+ LF  M +  +KP+ +T   +L AC+H GLV+EGL+Y
Sbjct: 613 -NEVSWNTIITSCSQHGRGLEALDLFDQMKQEGLKPNDVTFIGVLAACSHVGLVEEGLSY 671

Query: 442 FESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHG 501
           F+SM++  G+ P  +H+AC++++L +AG  D+    +++MP   ++ +W  L   C++H 
Sbjct: 672 FKSMSNVYGLNPIPDHYACVVDILGRAGQLDRARRFVDEMPITANAMIWRTLLSACKVHK 731

Query: 502 NIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWI 561
           NI++G      L++  P  SA++ LLS+ Y+  GK    ++VR+++ +R  +KE   SWI
Sbjct: 732 NIEIGELAAKHLLELEPHDSASYVLLSNAYAVTGKWANRDQVRKMMKDRGIRKEPGRSWI 791

Query: 562 EIENKVHAFSVSDSLHPMRDVLYSVLEQL 590
           E++N VHAF V D LHP+ D +Y  L +L
Sbjct: 792 EVKNAVHAFFVGDRLHPLSDQIYKFLSEL 820



 Score =  163 bits (412), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 121/491 (24%), Positives = 215/491 (43%), Gaps = 48/491 (9%)

Query: 8   RGINRKNLPNNCLIQSFLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKS 67
           RG+    L  N LI  +      G + +A      L+ R        L+   Q     ++
Sbjct: 72  RGLGADRLIGNLLIDLY---AKNGLVWQARQVFKELSSRDHVSWVAMLSGYAQSGLGKEA 128

Query: 68  LKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLS 127
            +L  ++H    +      ++ LS       F  G  + A +V+ +      F  N +++
Sbjct: 129 FRLYSQMHWTAVIPTPYVLSSVLSACTKGKLFAQGRMIHA-QVYKQAFCSETFVGNALIA 187

Query: 128 GYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFS 187
            Y   G  K A  +F +M   D V++NT+I G+A+ G  E  L+ +  ++   +  +  +
Sbjct: 188 LYLGFGSFKLAERVFCDMLFCDRVTFNTLISGHAQCGHGECALQIFDEMQLSGLRPDCVT 247

Query: 188 FAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETD 247
            A +L  C  + +L+  +Q+H  +L  G   + +   S++D Y KCG++  A  +F+  D
Sbjct: 248 VASLLAACASVGDLQKGKQLHSYLLKAGMSFDYITEGSLLDLYVKCGDIETAHDIFNLGD 307

Query: 248 ARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTR 307
             +V+ W  M+  Y ++ D+                                K+ E+F +
Sbjct: 308 RTNVVLWNLMLVAYGQISDL-------------------------------AKSFEIFGQ 336

Query: 308 MMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGC 367
           M    I PNQ T+   L  C     ++ G+Q+H   I+  F S+  V   LIDMYSK GC
Sbjct: 337 MQATGIHPNQFTYPCILRTCTCTGQIELGEQIHSLSIKNGFESDMYVSGVLIDMYSKYGC 396

Query: 368 LNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILN 427
           L+  R++ ++ + K + + W +MI+   QH + E+A+  F +M    V PD I LA   +
Sbjct: 397 LDKARKILEMLE-KRDVVSWTSMIAGYVQHDFCEEALATFKEMQDCGVWPDNIGLASAAS 455

Query: 428 ACTHSGLVQEGL-----TYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMP 482
           AC     +++GL      Y      D+ I         L+ L A+ G S++  +   ++ 
Sbjct: 456 ACAGIKAMRQGLQIHARVYVSGYAADISIWNT------LVNLYARCGRSEEAFSLFREIE 509

Query: 483 YEHDSYLWNAL 493
           ++ D   WN L
Sbjct: 510 HK-DEITWNGL 519



 Score =  108 bits (271), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 94/394 (23%), Positives = 177/394 (44%), Gaps = 75/394 (19%)

Query: 203 LTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYA 262
           L  ++H   +V G  ++ +I + ++D YAK G +  AR++F E  +RD ++W  M+SGYA
Sbjct: 61  LVLEIHATSVVRGLGADRLIGNLLIDLYAKNGLVWQARQVFKELSSRDHVSWVAMLSGYA 120

Query: 263 KLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSS 322
           +                               +GLG++A  L+++M    + P  +  SS
Sbjct: 121 Q-------------------------------SGLGKEAFRLYSQMHWTAVIPTPYVLSS 149

Query: 323 CLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVF-DLTDNK 381
            L AC        G+ +H  + +  F S T V ++LI +Y   G      +VF D+    
Sbjct: 150 VLSACTKGKLFAQGRMIHAQVYKQAFCSETFVGNALIALYLGFGSFKLAERVFCDMLFC- 208

Query: 382 ENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACT----------- 430
            + + +NT+IS   Q G+ E A+++F +M  S ++PD +T+A +L AC            
Sbjct: 209 -DRVTFNTLISGHAQCGHGECALQIFDEMQLSGLRPDCVTVASLLAACASVGDLQKGKQL 267

Query: 431 HSGLVQEGLTYFESMT-----------------HDLGIIPNQEHHACL-IELLAQAGCSD 472
           HS L++ G++ F+ +T                 HD+  + ++ +     + L+A    SD
Sbjct: 268 HSYLLKAGMS-FDYITEGSLLDLYVKCGDIETAHDIFNLGDRTNVVLWNLMLVAYGQISD 326

Query: 473 -----QLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSA-THGL 526
                ++  Q++      + + +  +   C   G I++G ++    I    +S     G+
Sbjct: 327 LAKSFEIFGQMQATGIHPNQFTYPCILRTCTCTGQIELGEQIHSLSIKNGFESDMYVSGV 386

Query: 527 LSSIYSALGKGRLVEKVRQLINERQFKKEQAISW 560
           L  +YS  G    ++K R+++     +K   +SW
Sbjct: 387 LIDMYSKYG---CLDKARKIL--EMLEKRDVVSW 415


>gi|356541109|ref|XP_003539025.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g18840-like [Glycine max]
          Length = 681

 Score =  315 bits (807), Expect = 5e-83,   Method: Compositional matrix adjust.
 Identities = 186/593 (31%), Positives = 321/593 (54%), Gaps = 16/593 (2%)

Query: 11  NRKNLPNNCLIQSFLSLISKGQLSEAISSLDLL-----AQRGIRLPAETLAFILQQCAES 65
           +R  +  N L+ +++   S G  +EA   LDL      A+  I +   TL  +L   A+ 
Sbjct: 77  HRDLVSYNSLLSAYVG--SDGYETEA---LDLFTRMQSARDTIGIDEITLTNMLNLAAKL 131

Query: 66  KSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKI-PVKNLFSYNN 124
           + L  GK++H ++  T        LS+ LI MY KCG   +A  +F     + +L S N 
Sbjct: 132 RVLCYGKQMHSYMVKTANDLSKFALSS-LIDMYSKCGCFQEACNLFGSCDEMVDLVSKNA 190

Query: 125 MLSGYANLGMMKHARNLF-DNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISC 183
           M++     G M  A N+F  N   +D VSWNT+I GY+++G +E+ L F+  +    I  
Sbjct: 191 MVAACCREGKMDMALNVFWKNPELKDTVSWNTLIAGYSQNGYMEKSLTFFVEMIENGIDF 250

Query: 184 NEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLF 243
           NE + A +L  C  L+  KL + VH  VL  G+ SN  ISS +VD Y+KCG +  A  ++
Sbjct: 251 NEHTLASVLNACSALKCSKLGKSVHAWVLKKGYSSNQFISSGVVDFYSKCGNIRYAELVY 310

Query: 244 DETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALE 303
            +   +      ++++ Y+  G+M  A +LF+ + E+N V WT L +GY ++   +   +
Sbjct: 311 AKIGIKSPFAVASLIAAYSSQGNMTEAQRLFDSLLERNSVVWTALCSGYVKSQQCEAVFK 370

Query: 304 LFTRMMILR-IRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMY 362
           LF        + P+     S L ACA    L  GKQ+H +++R  F+ +  ++SSL+DMY
Sbjct: 371 LFREFRTKEALVPDAMIIVSILGACAIQADLSLGKQIHAYILRMRFKVDKKLLSSLVDMY 430

Query: 363 SKCGCLNDGRQVFDL-TDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKIT 421
           SKCG +    ++F L TD+  +++L+N +I+    HG++ +AI LF +M+  SVKPD +T
Sbjct: 431 SKCGNVAYAEKLFRLVTDSDRDAILYNVIIAGYAHHGFENKAIELFQEMLNKSVKPDAVT 490

Query: 422 LAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKM 481
              +L+AC H GLV+ G  +F SM H   ++P   H+AC++++  +A   ++ +  + K+
Sbjct: 491 FVALLSACRHRGLVELGEQFFMSMEH-YNVLPEIYHYACMVDMYGRANQLEKAVEFMRKI 549

Query: 482 PYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVE 541
           P + D+ +W A    C++  +  + ++  ++L+     + + +  L++ Y+A GK   + 
Sbjct: 550 PIKIDATIWGAFLNACQMSSDAALVKQAEEELLKVEADNGSRYVQLANAYAAKGKWDEMG 609

Query: 542 KVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQM 594
           ++R+ +   + KK    SWI +EN +H F+  D  H   + +YS L  L G++
Sbjct: 610 RIRKKMRGHEAKKLAGCSWIYVENGIHVFTSGDRSHSKAEAVYSTLTCLNGKL 662



 Score =  181 bits (458), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 114/382 (29%), Positives = 193/382 (50%), Gaps = 36/382 (9%)

Query: 85  TPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDN 144
             + F  N LI +Y   G   +A K+FD++P  N+FS+N ++  Y     +  AR LFD+
Sbjct: 15  VSSIFTCNQLIHLYSNHGLLQEAHKLFDEMPHPNVFSWNAIIMAYIKAHNLTQARALFDS 74

Query: 145 MAERDVVSWNTMIIGYAKSGAVE-EGLKFYKVLR--RFSISCNEFSFAGILTICVKLEEL 201
            + RD+VS+N+++  Y  S   E E L  +  ++  R +I  +E +   +L +  KL  L
Sbjct: 75  ASHRDLVSYNSLLSAYVGSDGYETEALDLFTRMQSARDTIGIDEITLTNMLNLAAKLRVL 134

Query: 202 KLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDAR-DVLTWTTMVSG 260
              +Q+H  ++ T    +    SS++D Y+KCG   +A  LF   D   D+++   MV+ 
Sbjct: 135 CYGKQMHSYMVKTANDLSKFALSSLIDMYSKCGCFQEACNLFGSCDEMVDLVSKNAMVAA 194

Query: 261 YAKLGDMESASKLFNEMPE-KNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHT 319
             + G M+ A  +F + PE K+ VSW TLIAGY++NG  +K+L  F  M+   I  N+HT
Sbjct: 195 CCREGKMDMALNVFWKNPELKDTVSWNTLIAGYSQNGYMEKSLTFFVEMIENGIDFNEHT 254

Query: 320 FSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVF---- 375
            +S L AC+++   K GK VH ++++  + SN  + S ++D YSKCG +     V+    
Sbjct: 255 LASVLNACSALKCSKLGKSVHAWVLKKGYSSNQFISSGVVDFYSKCGNIRYAELVYAKIG 314

Query: 376 ------------------DLTDNK--------ENSMLWNTMISALTQHGYDEQAIRLFHD 409
                             ++T+ +         NS++W  + S   +    E   +LF +
Sbjct: 315 IKSPFAVASLIAAYSSQGNMTEAQRLFDSLLERNSVVWTALCSGYVKSQQCEAVFKLFRE 374

Query: 410 M-VRSSVKPDKITLAVILNACT 430
              + ++ PD + +  IL AC 
Sbjct: 375 FRTKEALVPDAMIIVSILGACA 396



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 75/258 (29%), Positives = 135/258 (52%), Gaps = 35/258 (13%)

Query: 208 HGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDM 267
           H Q + +G +S++   + ++  Y+  G L +A +LFDE    +V +W  ++  Y K  ++
Sbjct: 6   HVQAIKSGLVSSIFTCNQLIHLYSNHGLLQEAHKLFDEMPHPNVFSWNAIIMAYIKAHNL 65

Query: 268 ESASKLFNEMPEKNPVSWTTLIAGYT-RNGLGQKALELFTRMMILR--IRPNQHTFSSCL 324
             A  LF+    ++ VS+ +L++ Y   +G   +AL+LFTRM   R  I  ++ T ++ L
Sbjct: 66  TQARALFDSASHRDLVSYNSLLSAYVGSDGYETEALDLFTRMQSARDTIGIDEITLTNML 125

Query: 325 CACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDN---- 380
              A +  L +GKQ+H ++++T    +   +SSLIDMYSKCGC  +   +F   D     
Sbjct: 126 NLAAKLRVLCYGKQMHSYMVKTANDLSKFALSSLIDMYSKCGCFQEACNLFGSCDEMVDL 185

Query: 381 -KENSML---------------------------WNTMISALTQHGYDEQAIRLFHDMVR 412
             +N+M+                           WNT+I+  +Q+GY E+++  F +M+ 
Sbjct: 186 VSKNAMVAACCREGKMDMALNVFWKNPELKDTVSWNTLIAGYSQNGYMEKSLTFFVEMIE 245

Query: 413 SSVKPDKITLAVILNACT 430
           + +  ++ TLA +LNAC+
Sbjct: 246 NGIDFNEHTLASVLNACS 263


>gi|414872095|tpg|DAA50652.1| TPA: hypothetical protein ZEAMMB73_776700 [Zea mays]
          Length = 647

 Score =  315 bits (806), Expect = 5e-83,   Method: Compositional matrix adjust.
 Identities = 174/569 (30%), Positives = 294/569 (51%), Gaps = 39/569 (6%)

Query: 22  QSFLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLT 81
           +  + L S G++ EA   L    + G+       + I + C   ++L L +++H     +
Sbjct: 18  EDIIRLCSTGRVKEA---LHRRFREGLWSEPGLFSHIFRAC---QALPLLRQLHAFAATS 71

Query: 82  QRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNL 141
                  F +NHL+  Y   G    AR +F++IP +N+ S+N ++ GY   G ++ AR L
Sbjct: 72  GAAA-DRFTANHLLLAYADLGDFPTARGLFERIPKRNVMSWNILIGGYVKNGDLETARKL 130

Query: 142 FDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEEL 201
           FD M  R+V +WN M+ G   SG  EE L F+  +RR  +  +E+    +   C  L ++
Sbjct: 131 FDEMPARNVATWNAMVAGLTNSGLNEESLGFFFAMRREGMQPDEYGLGSLFRCCAGLRDV 190

Query: 202 KLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGY 261
              RQVH  V+ +G   ++ + SS+   Y +CG L D                     G 
Sbjct: 191 VSGRQVHAYVVRSGLDRDMCVGSSLAHMYMRCGFLRD---------------------GE 229

Query: 262 AKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFS 321
           A L            +P  N VS  T I+G T+NG  + ALE F  M    +  N  TF 
Sbjct: 230 AAL----------RALPSLNIVSCNTTISGRTQNGDAEGALEFFCLMRGAGVEANAVTFV 279

Query: 322 SCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNK 381
           S + +C+ + +L  G+Q+H   I+T       VM+SL+ MYS+CGCL D  +V  L  + 
Sbjct: 280 SAVTSCSDLAALAQGQQIHALAIKTGVDKVVPVMTSLVHMYSRCGCLGDSERVC-LEYSG 338

Query: 382 ENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTY 441
            + +L + MISA   HG+ ++A+ LF  M+ +  +P+++T   +L AC+HSGL  EG+  
Sbjct: 339 TDLVLCSAMISAYGFHGHGQKAVGLFKQMMAAGAEPNEVTFLTLLYACSHSGLKDEGMNC 398

Query: 442 FESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHG 501
           FE MT   G+ P+ +H+ C+++LL ++GC ++  + +  MP + D  +W  L   C+   
Sbjct: 399 FELMTKTYGLQPSVKHYTCIVDLLGRSGCLNEAEDLILSMPVQPDGVIWKTLLSACKTQK 458

Query: 502 NIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWI 561
             DM  ++ +++I+ +P  SA++ LLS+I +   +   V KVR+ + E+  +KE  +SW+
Sbjct: 459 KFDMAERIAERVIELDPHDSASYVLLSNIRATSSRWEDVSKVRETMREQNVRKEPGVSWV 518

Query: 562 EIENKVHAFSVSDSLHPMRDVLYSVLEQL 590
           E++ ++H F   D  H  +  +   LE++
Sbjct: 519 ELKGQIHQFCTGDESHSRQREIVECLEEM 547


>gi|356528338|ref|XP_003532761.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Glycine max]
          Length = 785

 Score =  315 bits (806), Expect = 5e-83,   Method: Compositional matrix adjust.
 Identities = 185/640 (28%), Positives = 318/640 (49%), Gaps = 104/640 (16%)

Query: 31  GQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFL 90
           G   E++   + + + GIR  + T   +L+  A S  ++  KRVH ++ L         +
Sbjct: 137 GNYRESVGLFEKMQELGIRGDSYTFTCVLKGFAASAKVRECKRVHGYV-LKLGFGSYNAV 195

Query: 91  SNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDV 150
            N LI+ YFKCG                                ++ AR LFD +++RDV
Sbjct: 196 VNSLIAAYFKCGE-------------------------------VESARILFDELSDRDV 224

Query: 151 VSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQ 210
           VSWN+MI G   +G    GL+F+  +    +  +  +   +L  C  +  L L R +H  
Sbjct: 225 VSWNSMISGCTMNGFSRNGLEFFIQMLNLGVDVDSATLVNVLVACANVGNLTLGRALHAY 284

Query: 211 VLVTGFLSNVVISSSIVDAYAKCGELSDARR----------------------------- 241
            +  GF   V+ +++++D Y+KCG L+ A                               
Sbjct: 285 GVKAGFSGGVMFNNTLLDMYSKCGNLNGANEVFVKMGETTIVSWTSIIAAHVREGLHYEA 344

Query: 242 --LFDETDAR----DVLTWTTMVSG----------------------------------- 260
             LFDE  ++    D+   T++V                                     
Sbjct: 345 IGLFDEMQSKGLRPDIYAVTSVVHACACSNSLDKGREVHNHIKKNNMGSNLPVSNALMNM 404

Query: 261 YAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTF 320
           YAK G ME A+ +F+++P KN VSW T+I GY++N L  +AL+LF  M   +++P+  T 
Sbjct: 405 YAKCGSMEEANLIFSQLPVKNIVSWNTMIGGYSQNSLPNEALQLFLDMQ-KQLKPDDVTM 463

Query: 321 SSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDN 380
           +  L ACA + +L+ G+++HG ++R  + S+  V  +L+DMY KCG L   +Q+FD+   
Sbjct: 464 ACVLPACAGLAALEKGREIHGHILRKGYFSDLHVACALVDMYVKCGLLVLAQQLFDMIP- 522

Query: 381 KENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLT 440
           K++ +LW  MI+    HG+ ++AI  F  M  + ++P++ +   IL ACTHSGL++EG  
Sbjct: 523 KKDMILWTVMIAGYGMHGFGKEAISTFEKMRVAGIEPEESSFTSILYACTHSGLLKEGWK 582

Query: 441 YFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIH 500
            F+SM  +  I P  EH+AC+++LL ++G   +    +E MP + D+ +W AL   CRIH
Sbjct: 583 LFDSMKSECNIEPKLEHYACMVDLLIRSGNLSRAYKFIETMPIKPDAAIWGALLSGCRIH 642

Query: 501 GNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISW 560
            ++++  KV + + +  P+++  + LL+++Y+   K   V+K+++ I++   K +Q  SW
Sbjct: 643 HDVELAEKVAEHIFELEPENTRYYVLLANVYAEAEKWEEVKKIQRRISKGGLKNDQGCSW 702

Query: 561 IEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQMGEDAPS 600
           IE++ K + F   D+ HP   ++ S+L +L  +M     S
Sbjct: 703 IEVQGKFNIFFAGDTSHPQAKMIDSLLRKLTMKMNRGGYS 742



 Score =  173 bits (439), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 115/394 (29%), Positives = 184/394 (46%), Gaps = 72/394 (18%)

Query: 49  RLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDAR 108
            L   T   +LQ CAE KSL+ GKRVH  +  +        L   L+ MY  CG  V  R
Sbjct: 54  ELELNTYCSVLQLCAELKSLEDGKRVHSIIS-SNGMAIDEVLGAKLVFMYVNCGDLVKGR 112

Query: 109 KVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAE----RDVVSWNTMIIGYAKSG 164
           ++FD I    +F +N ++S YA +G  + +  LF+ M E     D  ++  ++ G+A S 
Sbjct: 113 RIFDGILNDKIFLWNLLMSEYAKIGNYRESVGLFEKMQELGIRGDSYTFTCVLKGFAASA 172

Query: 165 AVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISS 224
            V E                                    ++VHG VL  GF S   + +
Sbjct: 173 KVRE-----------------------------------CKRVHGYVLKLGFGSYNAVVN 197

Query: 225 SIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVS 284
           S++ AY KCGE+  AR LFDE   RDV++W +M+SG                        
Sbjct: 198 SLIAAYFKCGEVESARILFDELSDRDVVSWNSMISG------------------------ 233

Query: 285 WTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLI 344
               + G++RNG     LE F +M+ L +  +  T  + L ACA++ +L  G+ +H + +
Sbjct: 234 --CTMNGFSRNG-----LEFFIQMLNLGVDVDSATLVNVLVACANVGNLTLGRALHAYGV 286

Query: 345 RTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAI 404
           +  F    +  ++L+DMYSKCG LN   +VF +   +   + W ++I+A  + G   +AI
Sbjct: 287 KAGFSGGVMFNNTLLDMYSKCGNLNGANEVF-VKMGETTIVSWTSIIAAHVREGLHYEAI 345

Query: 405 RLFHDMVRSSVKPDKITLAVILNACTHSGLVQEG 438
            LF +M    ++PD   +  +++AC  S  + +G
Sbjct: 346 GLFDEMQSKGLRPDIYAVTSVVHACACSNSLDKG 379



 Score =  140 bits (354), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 98/382 (25%), Positives = 170/382 (44%), Gaps = 69/382 (18%)

Query: 21  IQSFLSLIS----KGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHL 76
           I S+ S+I+    +G   EAI   D +  +G+R     +  ++  CA S SL  G+ VH 
Sbjct: 325 IVSWTSIIAAHVREGLHYEAIGLFDEMQSKGLRPDIYAVTSVVHACACSNSLDKGREVHN 384

Query: 77  HLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMK 136
           H+K     +    +SN L++MY KCGS  +A  +F ++PVKN+ S+N M+ GY+   +  
Sbjct: 385 HIKKNNMGSNLP-VSNALMNMYAKCGSMEEANLIFSQLPVKNIVSWNTMIGGYSQNSLPN 443

Query: 137 HARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICV 196
            A  LF +M ++                                +  ++ + A +L  C 
Sbjct: 444 EALQLFLDMQKQ--------------------------------LKPDDVTMACVLPACA 471

Query: 197 KLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTT 256
            L  L+  R++HG +L  G+ S++ ++ ++VD Y KCG L  A++LFD    +D++ WT 
Sbjct: 472 GLAALEKGREIHGHILRKGYFSDLHVACALVDMYVKCGLLVLAQQLFDMIPKKDMILWTV 531

Query: 257 MVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPN 316
           M+                               AGY  +G G++A+  F +M +  I P 
Sbjct: 532 MI-------------------------------AGYGMHGFGKEAISTFEKMRVAGIEPE 560

Query: 317 QHTFSSCLCACASIVSLKHG-KQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVF 375
           + +F+S L AC     LK G K         N        + ++D+  + G L+   +  
Sbjct: 561 ESSFTSILYACTHSGLLKEGWKLFDSMKSECNIEPKLEHYACMVDLLIRSGNLSRAYKFI 620

Query: 376 DLTDNKENSMLWNTMISALTQH 397
           +    K ++ +W  ++S    H
Sbjct: 621 ETMPIKPDAAIWGALLSGCRIH 642



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 71/283 (25%), Positives = 129/283 (45%), Gaps = 34/283 (12%)

Query: 151 VSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQ 210
           V  N  I  + + G +   +K     +R  +  N  ++  +L +C +L+ L+  ++VH  
Sbjct: 25  VDKNAKICKFCEMGDLRNAMKLLSRSQRSELELN--TYCSVLQLCAELKSLEDGKRVHSI 82

Query: 211 VLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESA 270
           +   G   + V+ + +V  Y  CG+L   RR+                            
Sbjct: 83  ISSNGMAIDEVLGAKLVFMYVNCGDLVKGRRI---------------------------- 114

Query: 271 SKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASI 330
              F+ +       W  L++ Y + G  ++++ LF +M  L IR + +TF+  L   A+ 
Sbjct: 115 ---FDGILNDKIFLWNLLMSEYAKIGNYRESVGLFEKMQELGIRGDSYTFTCVLKGFAAS 171

Query: 331 VSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTM 390
             ++  K+VHG++++  F S   V++SLI  Y KCG +   R +FD   +++  + WN+M
Sbjct: 172 AKVRECKRVHGYVLKLGFGSYNAVVNSLIAAYFKCGEVESARILFDELSDRD-VVSWNSM 230

Query: 391 ISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSG 433
           IS  T +G+    +  F  M+   V  D  TL  +L AC + G
Sbjct: 231 ISGCTMNGFSRNGLEFFIQMLNLGVDVDSATLVNVLVACANVG 273



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 42/149 (28%), Positives = 71/149 (47%), Gaps = 3/149 (2%)

Query: 289 IAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNF 348
           I  +   G  + A++L +R     +  N  T+ S L  CA + SL+ GK+VH  +     
Sbjct: 31  ICKFCEMGDLRNAMKLLSRSQRSELELN--TYCSVLQLCAELKSLEDGKRVHSIISSNGM 88

Query: 349 RSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFH 408
             + ++ + L+ MY  CG L  GR++FD   N +   LWN ++S   + G   +++ LF 
Sbjct: 89  AIDEVLGAKLVFMYVNCGDLVKGRRIFDGILN-DKIFLWNLLMSEYAKIGNYRESVGLFE 147

Query: 409 DMVRSSVKPDKITLAVILNACTHSGLVQE 437
            M    ++ D  T   +L     S  V+E
Sbjct: 148 KMQELGIRGDSYTFTCVLKGFAASAKVRE 176


>gi|357129337|ref|XP_003566320.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g20230-like [Brachypodium distachyon]
          Length = 661

 Score =  315 bits (806), Expect = 5e-83,   Method: Compositional matrix adjust.
 Identities = 169/524 (32%), Positives = 280/524 (53%), Gaps = 11/524 (2%)

Query: 89  FLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNM--- 145
           F+++ L+  Y + G+   AR VFD++P KN+  ++ +++GY+  G  + A  L + M   
Sbjct: 53  FVASSLLHSYIRLGATGAARSVFDRMPEKNVVGWSALIAGYSARGDAEAAWGLLEQMRSA 112

Query: 146 -AERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLT 204
             E +V++WN ++ G  +SG   + +     +       +    +  L+    ++E+ + 
Sbjct: 113 GVEPNVITWNGLVSGLNRSGRALDAVTALVRMHSEGFFPDATGVSCALSAVGDVKEVSVG 172

Query: 205 RQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKL 264
           +QVHG V+  G   +  + ++++D Y KCG   +  R+F E+   DV +   +V+G ++ 
Sbjct: 173 KQVHGYVVKAGCRLDACVVTALIDMYGKCGRADEIVRVFHESSHMDVASCNALVAGLSRN 232

Query: 265 GDMESASKLFNEM----PEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTF 320
             +  A  LF E      E N VSWT+++A   +NG   +A++LF  M  + + PN  T 
Sbjct: 233 AQVSEALLLFREFICRGVELNVVSWTSIVACCVQNGRDLEAVDLFRTMQSIGVEPNSVTI 292

Query: 321 SSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDN 380
              L A A++ +L HG+  H F +R  F  +  V S+L+DMY+KCG     R +FD   +
Sbjct: 293 PCVLPAFANVAALMHGRSAHCFSLRKGFLHDVYVGSALVDMYAKCGKARHARTIFDAMPS 352

Query: 381 KENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLT 440
           + N + WN MI     HG    A++LF  M +   KPD +T   +L AC+ +GL +EG  
Sbjct: 353 R-NVVSWNAMIGGYAMHGDAANAVQLFCSMQKCKQKPDLVTFTCVLGACSQAGLTEEGRR 411

Query: 441 YFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIH 500
           YF  M    GI P  EH+AC++ LL ++G  D+  + + +MP+E DS +W +L G CR++
Sbjct: 412 YFNEMQQGHGISPRMEHYACMVTLLGRSGKLDEAYDLINEMPFEPDSCIWGSLLGSCRVY 471

Query: 501 GNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISW 560
           GN+ +     ++L    P ++  + LLS+IY++      V +VR  +     KKE+  SW
Sbjct: 472 GNVLLAEVAAEKLFQLEPGNAGNYVLLSNIYASKKMWDGVNRVRDEMKNMGLKKEKGCSW 531

Query: 561 IEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQMGE--DAPSLD 602
           IEI+NKVH     D+ HPM   +   L QL  +M     APS D
Sbjct: 532 IEIKNKVHMLLAGDNSHPMMTAITEKLNQLTIEMNRLGFAPSRD 575



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 99/423 (23%), Positives = 182/423 (43%), Gaps = 55/423 (13%)

Query: 172 FYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYA 231
            Y  LR  S   +       L  C       L R +H   +V+G   +  ++SS++ +Y 
Sbjct: 7   LYHFLRHVSFPPDPHLLPSALKSC---PAQPLARALHAAAVVSGLAEDPFVASSLLHSYI 63

Query: 232 KCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMP----EKNPVSWTT 287
           + G    AR +FD    ++V+ W+ +++GY+  GD E+A  L  +M     E N ++W  
Sbjct: 64  RLGATGAARSVFDRMPEKNVVGWSALIAGYSARGDAEAAWGLLEQMRSAGVEPNVITWNG 123

Query: 288 LIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTN 347
           L++G  R+G    A+    RM      P+    S  L A   +  +  GKQVHG++++  
Sbjct: 124 LVSGLNRSGRALDAVTALVRMHSEGFFPDATGVSCALSAVGDVKEVSVGKQVHGYVVKAG 183

Query: 348 FRSNTIVMSSLIDMYSKCGCLNDGRQVF----------------DLTDNKE--------- 382
            R +  V+++LIDMY KCG  ++  +VF                 L+ N +         
Sbjct: 184 CRLDACVVTALIDMYGKCGRADEIVRVFHESSHMDVASCNALVAGLSRNAQVSEALLLFR 243

Query: 383 ---------NSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSG 433
                    N + W ++++   Q+G D +A+ LF  M    V+P+ +T+  +L A  +  
Sbjct: 244 EFICRGVELNVVSWTSIVACCVQNGRDLEAVDLFRTMQSIGVEPNSVTIPCVLPAFANVA 303

Query: 434 LVQEG-----LTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSY 488
            +  G      +  +   HD+ +       + L+++ A+ G +       + MP   +  
Sbjct: 304 ALMHGRSAHCFSLRKGFLHDVYV------GSALVDMYAKCGKARHARTIFDAMP-SRNVV 356

Query: 489 LWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLIN 548
            WNA+ G   +HG+     ++   +  Q  +        + +  A  +  L E+ R+  N
Sbjct: 357 SWNAMIGGYAMHGDAANAVQLFCSM--QKCKQKPDLVTFTCVLGACSQAGLTEEGRRYFN 414

Query: 549 ERQ 551
           E Q
Sbjct: 415 EMQ 417



 Score =  116 bits (290), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 78/302 (25%), Positives = 147/302 (48%), Gaps = 10/302 (3%)

Query: 16  PNNCLIQSFLSLISK-GQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRV 74
           PN       +S +++ G+  +A+++L  +   G    A  ++  L    + K + +GK+V
Sbjct: 116 PNVITWNGLVSGLNRSGRALDAVTALVRMHSEGFFPDATGVSCALSAVGDVKEVSVGKQV 175

Query: 75  HLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGM 134
           H ++     +     ++  LI MY KCG   +  +VF +    ++ S N +++G +    
Sbjct: 176 HGYVVKAGCRLDACVVTA-LIDMYGKCGRADEIVRVFHESSHMDVASCNALVAGLSRNAQ 234

Query: 135 MKHARNLFDNM----AERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAG 190
           +  A  LF        E +VVSW +++    ++G   E +  ++ ++   +  N  +   
Sbjct: 235 VSEALLLFREFICRGVELNVVSWTSIVACCVQNGRDLEAVDLFRTMQSIGVEPNSVTIPC 294

Query: 191 ILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARD 250
           +L     +  L   R  H   L  GFL +V + S++VD YAKCG+   AR +FD   +R+
Sbjct: 295 VLPAFANVAALMHGRSAHCFSLRKGFLHDVYVGSALVDMYAKCGKARHARTIFDAMPSRN 354

Query: 251 VLTWTTMVSGYAKLGDMESASKLFNEMP--EKNP--VSWTTLIAGYTRNGLGQKALELFT 306
           V++W  M+ GYA  GD  +A +LF  M   ++ P  V++T ++   ++ GL ++    F 
Sbjct: 355 VVSWNAMIGGYAMHGDAANAVQLFCSMQKCKQKPDLVTFTCVLGACSQAGLTEEGRRYFN 414

Query: 307 RM 308
            M
Sbjct: 415 EM 416


>gi|297847764|ref|XP_002891763.1| hypothetical protein ARALYDRAFT_314676 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297337605|gb|EFH68022.1| hypothetical protein ARALYDRAFT_314676 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 828

 Score =  315 bits (806), Expect = 5e-83,   Method: Compositional matrix adjust.
 Identities = 164/547 (29%), Positives = 293/547 (53%), Gaps = 37/547 (6%)

Query: 84  KTPTTF----LSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHAR 139
           +TP  F     SN L+S Y + G   +A +VF+ + VK + SY++M+ GY  +G +  AR
Sbjct: 169 ETPVKFRDPVASNVLLSGYLRVGKWNEAVRVFEGMAVKEVVSYSSMVDGYCKMGRILDAR 228

Query: 140 NLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRR-FSISCNEFSFAGILTICVKL 198
           +LFD M ER+V++W  MI GY K+G  E+G   +  +R+   +  N  + A +   C   
Sbjct: 229 SLFDRMPERNVITWTAMIDGYFKAGFFEDGFGLFLRMRQEGDVRVNSNTLAVMFRACRDF 288

Query: 199 EELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCG------------------------ 234
              +   Q+HG +       ++ + +S++  Y+K G                        
Sbjct: 289 FRYREGSQIHGLLSRMPLEFDLFLGNSLISMYSKLGYMGEAKAVFGVMKYKDSVSWNSLI 348

Query: 235 -------ELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTT 287
                  ++S+A  LF++   +D+++WT M+ G++  G++    +LF  MPEK+ ++WT 
Sbjct: 349 TGLVQREQISEAYELFEKMPGKDMVSWTDMIKGFSGKGEISKCVELFGMMPEKDDITWTA 408

Query: 288 LIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTN 347
           +I+ +  NG  ++AL  F +M+  ++ PN +TFSS L A AS+  L  G Q+HG +++ N
Sbjct: 409 MISAFVSNGYYEEALCWFHKMLRKQVCPNSYTFSSVLSATASLADLIEGLQIHGRVVKMN 468

Query: 348 FRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLF 407
             ++  V +SL+ MY KCG  ND  ++F    ++ N + +NTMIS  + +G+ ++A++LF
Sbjct: 469 MANDLSVQNSLVSMYCKCGNTNDAYKIFSCI-SEPNIVSYNTMISGFSYNGFGKEAVKLF 527

Query: 408 HDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQ 467
             +  +  +P+ +T   +L+AC H G V  G  YF+SM    GI P  +H+AC+++L  +
Sbjct: 528 SMLESTGKEPNGVTFLALLSACVHVGYVDLGWKYFKSMKFSYGIEPGPDHYACMVDLFGR 587

Query: 468 AGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLL 527
           +G  D+  N +  MP E  S +W +L    + H  +D+      +LI+  P S+  + +L
Sbjct: 588 SGLLDEAYNLISTMPCEPHSGVWGSLLSASKTHLRVDLAELAAKKLIELEPDSATPYVVL 647

Query: 528 SSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVL 587
           S +YS +GK    +++  +   ++ KK+   SWI ++ +VH F   D  H   + +   L
Sbjct: 648 SQLYSMVGKNSDCDRIMNIKKSKRIKKDPGSSWIILKGQVHNFLAGDESHLNLEEIAFTL 707

Query: 588 EQLAGQM 594
           + +  +M
Sbjct: 708 DMIGNEM 714



 Score =  161 bits (408), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 134/508 (26%), Positives = 234/508 (46%), Gaps = 64/508 (12%)

Query: 77  HLKLTQR-----KTPTT----FLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLS 127
           H  +TQ+     +T TT    F  N  IS   + G+  +A  +F ++  +++ S+N M+S
Sbjct: 30  HEPITQKTRSFLETTTTSTAIFQCNSQISKLARNGNLQEAEAIFRQMSHRSIVSWNAMIS 89

Query: 128 GYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISC---- 183
            YA  G M  A  +FD M  R   S+N MI    K+           + + + + C    
Sbjct: 90  AYAENGKMSKAWQVFDEMPVRATTSYNAMITAMIKNKC--------DLGKAYELFCDIPE 141

Query: 184 -NEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRL 242
            N  S+A ++T  V+         ++ +  V     + V S+ ++  Y + G+ ++A R+
Sbjct: 142 KNAVSYATMITGFVRAGRFDEAECLYAETPVK--FRDPVASNVLLSGYLRVGKWNEAVRV 199

Query: 243 FDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKAL 302
           F+    ++V+++++MV GY K+G +  A  LF+ MPE+N ++WT +I GY + G  +   
Sbjct: 200 FEGMAVKEVVSYSSMVDGYCKMGRILDARSLFDRMPERNVITWTAMIDGYFKAGFFEDGF 259

Query: 303 ELFTRM-MILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDM 361
            LF RM     +R N +T +    AC      + G Q+HG L R     +  + +SLI M
Sbjct: 260 GLFLRMRQEGDVRVNSNTLAVMFRACRDFFRYREGSQIHGLLSRMPLEFDLFLGNSLISM 319

Query: 362 YSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFH-----------DM 410
           YSK G + + + VF +   K+ S+ WN++I+ L Q     +A  LF            DM
Sbjct: 320 YSKLGYMGEAKAVFGVMKYKD-SVSWNSLITGLVQREQISEAYELFEKMPGKDMVSWTDM 378

Query: 411 VRS--------------SVKPDK--ITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPN 454
           ++                + P+K  IT   +++A   +G  +E L +F  M     + PN
Sbjct: 379 IKGFSGKGEISKCVELFGMMPEKDDITWTAMISAFVSNGYYEEALCWFHKMLRK-QVCPN 437

Query: 455 QEHHACLIELLAQAGCSD-----QLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKV 509
               + +  L A A  +D     Q+  ++ KM   +D  + N+L  +    GN +   K+
Sbjct: 438 SYTFSSV--LSATASLADLIEGLQIHGRVVKMNMANDLSVQNSLVSMYCKCGNTNDAYKI 495

Query: 510 VDQLIDQNPQSSATHGLLSSI-YSALGK 536
              + + N  S  T  ++S   Y+  GK
Sbjct: 496 FSCISEPNIVSYNT--MISGFSYNGFGK 521



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 95/421 (22%), Positives = 184/421 (43%), Gaps = 73/421 (17%)

Query: 43  LAQRG-IRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTT---FLSNHLISMY 98
           + Q G +R+ + TLA + + C +    + G ++H  L     + P     FL N LISMY
Sbjct: 265 MRQEGDVRVNSNTLAVMFRACRDFFRYREGSQIHGLLS----RMPLEFDLFLGNSLISMY 320

Query: 99  FKCGSDVDARKV-------------------------------FDKIPVKNLFSYNNMLS 127
            K G   +A+ V                               F+K+P K++ S+ +M+ 
Sbjct: 321 SKLGYMGEAKAVFGVMKYKDSVSWNSLITGLVQREQISEAYELFEKMPGKDMVSWTDMIK 380

Query: 128 GYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFS 187
           G++  G +     LF  M E+D ++W  MI  +  +G  EE L ++  + R  +  N ++
Sbjct: 381 GFSGKGEISKCVELFGMMPEKDDITWTAMISAFVSNGYYEEALCWFHKMLRKQVCPNSYT 440

Query: 188 FAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETD 247
           F+ +L+    L +L    Q+HG+V+     +++ + +S+V  Y KCG  +DA ++F    
Sbjct: 441 FSSVLSATASLADLIEGLQIHGRVVKMNMANDLSVQNSLVSMYCKCGNTNDAYKIFSCIS 500

Query: 248 ARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTR 307
             +++++ TM+SG                               ++ NG G++A++LF+ 
Sbjct: 501 EPNIVSYNTMISG-------------------------------FSYNGFGKEAVKLFSM 529

Query: 308 MMILRIRPNQHTFSSCLCACASIVSLKHG-KQVHGFLIRTNFRSNTIVMSSLIDMYSKCG 366
           +      PN  TF + L AC  +  +  G K                  + ++D++ + G
Sbjct: 530 LESTGKEPNGVTFLALLSACVHVGYVDLGWKYFKSMKFSYGIEPGPDHYACMVDLFGRSG 589

Query: 367 CLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVIL 426
            L++   +      + +S +W +++SA   H   + A      ++   ++PD  T  V+L
Sbjct: 590 LLDEAYNLISTMPCEPHSGVWGSLLSASKTHLRVDLAELAAKKLIE--LEPDSATPYVVL 647

Query: 427 N 427
           +
Sbjct: 648 S 648


>gi|51535392|dbj|BAD37262.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|51535558|dbj|BAD37476.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
          Length = 908

 Score =  315 bits (806), Expect = 6e-83,   Method: Compositional matrix adjust.
 Identities = 174/555 (31%), Positives = 283/555 (50%), Gaps = 74/555 (13%)

Query: 107 ARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAV 166
           AR++FD++P +++ ++N +L  YA  G+M  AR LFD M +R+  SWNTM+ G+  +G V
Sbjct: 120 ARRLFDEMPQRDVVTWNTLLGAYARRGLMDEARRLFDEMPQRNAASWNTMVTGFFAAGQV 179

Query: 167 EEGLKFYKVL-----------------------------RRFSISCNE------------ 185
            + L  +  +                             +R S++  +            
Sbjct: 180 VKALDVFDAMPAKDSASLSTMVSGFTKNGMLHEAEELLTKRLSVTDMDKAVDAYNTLIVA 239

Query: 186 FSFAGILTICVKLEELKLTRQV-HGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFD 244
           +  AG  +   +L ++    Q  H  +   GF  NVV  +S++  Y K G++  AR LF+
Sbjct: 240 YGQAGRFSDAKRLFDMIPKGQYQHNMLKRKGFERNVVSWNSMMICYIKAGDVCSARALFN 299

Query: 245 ETDARDVLTWTTMVSGYAKLGDMESASKLFNEMP-------------------------- 278
           E   +D+++W TM+SGY +  DM+ + KLF EMP                          
Sbjct: 300 EMPDKDLVSWNTMISGYTQASDMKESEKLFWEMPDPDTVSWNLIIQGFMQKGEAEHARGF 359

Query: 279 -----EKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSL 333
                E+  +SW T+I+GY +NG    +++LF++M+ +   P++HTFSS L ACASI  L
Sbjct: 360 FDRMPERGTISWNTMISGYEKNGNYISSVKLFSKMLEVGEIPDRHTFSSVLAACASIPML 419

Query: 334 KHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISA 393
             G Q+H  L+  +F  +T + ++LI MYS+CG LND   +F     K++ + WN +I  
Sbjct: 420 GLGAQIHQ-LVEKSFVPDTAISNALITMYSRCGALNDAEAIFKQMHTKKDLVSWNALIGC 478

Query: 394 LTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIP 453
              HG   +A++LF +M R+ V P  IT   +L+AC ++GLV EG   F++M H+ GI+ 
Sbjct: 479 YEHHGRATKALQLFKEMRRAKVMPTHITFVSLLSACVNAGLVSEGRMVFDTMVHEYGIVA 538

Query: 454 NQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQL 513
             EH+A L+ L+ + G  D  +  +  MP   D  +W A  G C    N  + +    +L
Sbjct: 539 RIEHYAALVNLIGRHGQLDDALEVINSMPMAPDRSVWGAFLGACTAKKNEPLAQMAAKEL 598

Query: 514 IDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVS 573
              NP SSA + L+ ++++  GK      VR+ +  +   K+   SWI++E K+H F   
Sbjct: 599 STINPDSSAPYVLIHNLHAHEGKWGSAAVVREEMERQGIYKQPGYSWIDLEGKMHVFISG 658

Query: 574 DSLHPMRDVLYSVLE 588
           D+ HP    ++SVLE
Sbjct: 659 DTWHPNAQEIFSVLE 673



 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 94/365 (25%), Positives = 172/365 (47%), Gaps = 52/365 (14%)

Query: 92  NHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVV 151
           N  ++   + G    AR++FD +P +++ ++N++L+G A     + AR  FD M  RD V
Sbjct: 40  NRSLAALLRAGRYGAARRLFDALPARSVVTWNSLLAGLARRPDARAAREFFDAMPVRDAV 99

Query: 152 SWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQV 211
           SWNT++  Y+ S                                   + L   R++  ++
Sbjct: 100 SWNTLLAAYSASP--------------------------------HPDHLAAARRLFDEM 127

Query: 212 LVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESAS 271
                  +VV  ++++ AYA+ G + +ARRLFDE   R+  +W TMV+G+   G +  A 
Sbjct: 128 PQ----RDVVTWNTLLGAYARRGLMDEARRLFDEMPQRNAASWNTMVTGFFAAGQVVKAL 183

Query: 272 KLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFT-RMMILRIRPNQHTFSSCLCACASI 330
            +F+ MP K+  S +T+++G+T+NG+  +A EL T R+ +  +      +++ + A    
Sbjct: 184 DVFDAMPAKDSASLSTMVSGFTKNGMLHEAEELLTKRLSVTDMDKAVDAYNTLIVAYGQA 243

Query: 331 VSLKHGKQV----------HGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDN 380
                 K++          H  L R  F  N +  +S++  Y K G +   R +F+   +
Sbjct: 244 GRFSDAKRLFDMIPKGQYQHNMLKRKGFERNVVSWNSMMICYIKAGDVCSARALFNEMPD 303

Query: 381 KENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLT 440
           K + + WNTMIS  TQ    +++ +LF +M      PD ++  +I+      G  +    
Sbjct: 304 K-DLVSWNTMISGYTQASDMKESEKLFWEM----PDPDTVSWNLIIQGFMQKGEAEHARG 358

Query: 441 YFESM 445
           +F+ M
Sbjct: 359 FFDRM 363



 Score = 89.4 bits (220), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 74/351 (21%), Positives = 138/351 (39%), Gaps = 68/351 (19%)

Query: 86  PTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNM 145
           P T   N +I  + + G    AR  FD++P +   S+N M+SGY   G    +  LF  M
Sbjct: 335 PDTVSWNLIIQGFMQKGEAEHARGFFDRMPERGTISWNTMISGYEKNGNYISSVKLFSKM 394

Query: 146 AERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTR 205
            E   +                                +  +F+ +L  C  +  L L  
Sbjct: 395 LEVGEIP-------------------------------DRHTFSSVLAACASIPMLGLGA 423

Query: 206 QVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDA-RDVLTWTTMVSGYAKL 264
           Q+H Q++   F+ +  IS++++  Y++CG L+DA  +F +    +D+++W  ++  Y   
Sbjct: 424 QIH-QLVEKSFVPDTAISNALITMYSRCGALNDAEAIFKQMHTKKDLVSWNALIGCY--- 479

Query: 265 GDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCL 324
                                         +G   KAL+LF  M   ++ P   TF S L
Sbjct: 480 ----------------------------EHHGRATKALQLFKEMRRAKVMPTHITFVSLL 511

Query: 325 CACASIVSLKHGKQVHGFLIRT-NFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKEN 383
            AC +   +  G+ V   ++      +     ++L+++  + G L+D  +V +      +
Sbjct: 512 SACVNAGLVSEGRMVFDTMVHEYGIVARIEHYAALVNLIGRHGQLDDALEVINSMPMAPD 571

Query: 384 SMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVIL-NACTHSG 433
             +W   + A T    +  A     ++  S++ PD     V++ N   H G
Sbjct: 572 RSVWGAFLGACTAKKNEPLAQMAAKEL--STINPDSSAPYVLIHNLHAHEG 620



 Score = 58.9 bits (141), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 58/272 (21%), Positives = 125/272 (45%), Gaps = 31/272 (11%)

Query: 263 KLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSS 322
           + G   +A +LF+ +P ++ V+W +L+AG  R    + A E F  M +     +  ++++
Sbjct: 48  RAGRYGAARRLFDALPARSVVTWNSLLAGLARRPDARAAREFFDAMPVR----DAVSWNT 103

Query: 323 CLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKE 382
            L A ++     H             R + +  ++L+  Y++ G +++ R++FD    + 
Sbjct: 104 LLAAYSASPHPDHLAAARRLFDEMPQR-DVVTWNTLLGAYARRGLMDEARRLFDEMPQR- 161

Query: 383 NSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYF 442
           N+  WNTM++     G   +A+ +F  M       D  +L+ +++  T +G++ E     
Sbjct: 162 NAASWNTMVTGFFAAGQVVKALDVFDAMPAK----DSASLSTMVSGFTKNGMLHEAE--- 214

Query: 443 ESMTHDLGIIPNQ---EHHACLIELLAQAGC---SDQLMNQLEKMPYEHDSYL------- 489
           E +T  L +       + +  LI    QAG    + +L + + K  Y+H+          
Sbjct: 215 ELLTKRLSVTDMDKAVDAYNTLIVAYGQAGRFSDAKRLFDMIPKGQYQHNMLKRKGFERN 274

Query: 490 ---WNALHGVCRIH-GNIDMGRKVVDQLIDQN 517
              WN++  +C I  G++   R + +++ D++
Sbjct: 275 VVSWNSMM-ICYIKAGDVCSARALFNEMPDKD 305



 Score = 55.5 bits (132), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 44/189 (23%), Positives = 83/189 (43%), Gaps = 37/189 (19%)

Query: 54  TLAFILQQCAESKSLKLGKRVHLHLKLTQRK-TPTTFLSNHLISMYFKCGSDVDARKVFD 112
           T + +L  CA    L LG ++H   +L ++   P T +SN LI+MY +CG+  DA  +F 
Sbjct: 405 TFSSVLAACASIPMLGLGAQIH---QLVEKSFVPDTAISNALITMYSRCGALNDAEAIFK 461

Query: 113 KIPV-KNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLK 171
           ++   K+L S+N ++  Y +                                G   + L+
Sbjct: 462 QMHTKKDLVSWNALIGCYEH-------------------------------HGRATKALQ 490

Query: 172 FYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVL-VTGFLSNVVISSSIVDAY 230
            +K +RR  +     +F  +L+ CV    +   R V   ++   G ++ +   +++V+  
Sbjct: 491 LFKEMRRAKVMPTHITFVSLLSACVNAGLVSEGRMVFDTMVHEYGIVARIEHYAALVNLI 550

Query: 231 AKCGELSDA 239
            + G+L DA
Sbjct: 551 GRHGQLDDA 559


>gi|356510957|ref|XP_003524199.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g44230-like [Glycine max]
          Length = 617

 Score =  315 bits (806), Expect = 6e-83,   Method: Compositional matrix adjust.
 Identities = 166/508 (32%), Positives = 279/508 (54%), Gaps = 16/508 (3%)

Query: 100 KCGSDVDARKVFDKIPVKNLFSYNNMLS-------GYANLGMMKHARNLFDNMAERDVVS 152
           +C S   A++V  +I +KNL   + +L+          ++ +  + R LF  +   +  +
Sbjct: 17  RCSSLNQAKEVHAQIYIKNLQQSSYVLTKLLRLVTALPHVPLHSYPRLLFSQLHTPNPFA 76

Query: 153 WNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQ-V 211
           W  +I  YA  G + + L FY  +R+  +S   F+F+ + + C  +    L  Q+H Q +
Sbjct: 77  WTALIRAYALRGPLSQALSFYSSMRKRRVSPISFTFSALFSACAAVRHSALGAQLHAQTL 136

Query: 212 LVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESAS 271
           L+ GF S++ ++++++D Y KCG L  AR +FDE   RDV++WT ++  Y ++GDM +A 
Sbjct: 137 LLGGFSSDLYVNNAVIDMYVKCGSLRCARMVFDEMPERDVISWTGLIVAYTRIGDMRAAR 196

Query: 272 KLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIV 331
            LF+ +P K+ V+WT ++ GY +N +   ALE+F R+    +  ++ T    + ACA + 
Sbjct: 197 DLFDGLPVKDMVTWTAMVTGYAQNAMPMDALEVFRRLRDEGVEIDEVTLVGVISACAQLG 256

Query: 332 SLKHGKQVHGFLIRTNFR--SNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNT 389
           + K+   +      + F    N +V S+LIDMYSKCG + +   VF     + N   +++
Sbjct: 257 ASKYANWIRDIAESSGFGVGDNVLVGSALIDMYSKCGNVEEAYDVFKGMRER-NVFSYSS 315

Query: 390 MISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDL 449
           MI     HG    AI+LF+DM+ + VKP+ +T   +L AC+H+GLV +G   F SM    
Sbjct: 316 MIVGFAIHGRARAAIKLFYDMLETGVKPNHVTFVGVLTACSHAGLVDQGQQLFASMEKCY 375

Query: 450 GIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKV 509
           G+ P  E +AC+ +LL++AG  ++ +  +E MP E D  +W AL G   +HGN D+    
Sbjct: 376 GVAPTAELYACMTDLLSRAGYLEKALQLVETMPMESDGAVWGALLGASHVHGNPDVAEIA 435

Query: 510 VDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENK-VH 568
             +L +  P +   + LLS+ Y++ G+   V KVR+L+ E+  KK    SW+E +N  +H
Sbjct: 436 SKRLFELEPDNIGNYLLLSNTYASAGRWDDVSKVRKLLREKNLKKNPGWSWVEAKNGMIH 495

Query: 569 AFSVSDSLHP----MRDVLYSVLEQLAG 592
            F   D  HP    ++  L  +LE+L G
Sbjct: 496 KFVAGDVSHPKINEIKKELNDLLERLKG 523



 Score =  164 bits (414), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 101/398 (25%), Positives = 191/398 (47%), Gaps = 44/398 (11%)

Query: 30  KGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTF 89
           +G LS+A+S    + +R +   + T + +   CA  +   LG ++H    L    +   +
Sbjct: 87  RGPLSQALSFYSSMRKRRVSPISFTFSALFSACAAVRHSALGAQLHAQTLLLGGFSSDLY 146

Query: 90  LSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERD 149
           ++N +I MY KCGS   AR VFD++P +++ S+  ++  Y  +G M+ AR+LFD +  +D
Sbjct: 147 VNNAVIDMYVKCGSLRCARMVFDEMPERDVISWTGLIVAYTRIGDMRAARDLFDGLPVKD 206

Query: 150 VVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHG 209
           +V+W  M+ GYA++    + L+ ++ LR   +  +E +  G+++ C +L   K    +  
Sbjct: 207 MVTWTAMVTGYAQNAMPMDALEVFRRLRDEGVEIDEVTLVGVISACAQLGASKYANWIRD 266

Query: 210 QVLVTGF--LSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDM 267
               +GF    NV++ S+++D Y+KCG + +A  +F     R+V ++++M+ G+A  G  
Sbjct: 267 IAESSGFGVGDNVLVGSALIDMYSKCGNVEEAYDVFKGMRERNVFSYSSMIVGFAIHGRA 326

Query: 268 ESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCAC 327
            +A KLF +M E                                 ++PN  TF   L AC
Sbjct: 327 RAAIKLFYDMLETG-------------------------------VKPNHVTFVGVLTAC 355

Query: 328 ASIVSLKHGKQVHGFLIRTNFRSNTI-VMSSLIDMYSKCGCLNDGRQVFDLTDNKENSML 386
           +    +  G+Q+   + +    + T  + + + D+ S+ G L    Q+ +    + +  +
Sbjct: 356 SHAGLVDQGQQLFASMEKCYGVAPTAELYACMTDLLSRAGYLEKALQLVETMPMESDGAV 415

Query: 387 WNTMISALTQHGYDEQA----IRLFHDMVRSSVKPDKI 420
           W  ++ A   HG  + A     RLF       ++PD I
Sbjct: 416 WGALLGASHVHGNPDVAEIASKRLFE------LEPDNI 447


>gi|224123788|ref|XP_002319164.1| predicted protein [Populus trichocarpa]
 gi|222857540|gb|EEE95087.1| predicted protein [Populus trichocarpa]
          Length = 989

 Score =  315 bits (806), Expect = 6e-83,   Method: Compositional matrix adjust.
 Identities = 175/573 (30%), Positives = 294/573 (51%), Gaps = 67/573 (11%)

Query: 27  LISKGQLSEAISSLDLLAQRGIR--LPAE-TLAFILQQCAESKSLKLGKRVHLHLKLTQR 83
           L++ G+L     S  +  Q  I+  +P + T   IL+ C    +L LG+++H  +     
Sbjct: 387 LVAFGKLDNLSESFRIFRQMQIKGLIPNQFTYPSILRTCTSVGALDLGEQIHTQVI---- 442

Query: 84  KTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFD 143
           KT   F                            N++  + ++  YA  G +  A  +  
Sbjct: 443 KTGFQF----------------------------NVYVCSVLIDMYAKHGKLDTAHVILR 474

Query: 144 NMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKL 203
            + E DVVSW  +I GYA+     E LK +K +    I  +   F+  ++ C  ++ L  
Sbjct: 475 TLTEDDVVSWTALISGYAQHNLFAEALKHFKEMLNRGIQSDNIGFSSAISACAGIQALNQ 534

Query: 204 TRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAK 263
            RQ+H Q  V+G+  ++ I +++V  YA+C                              
Sbjct: 535 GRQIHAQSYVSGYSEDLSIGNALVSLYARC------------------------------ 564

Query: 264 LGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSC 323
            G ++ A   F ++  K+ +SW  LI+G+ ++G  + AL++F +M   ++  +  TF S 
Sbjct: 565 -GRIKEAYLEFEKIDAKDSISWNGLISGFAQSGYCEDALKVFAQMNRAKLEASFFTFGSA 623

Query: 324 LCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKEN 383
           + A A+I ++K GKQ+H  +I+  F S+  V ++LI  Y+KCG + D R+ F     K N
Sbjct: 624 VSAAANIANIKQGKQIHAMIIKRGFDSDIEVSNALITFYAKCGSIEDARREFCEMPEK-N 682

Query: 384 SMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFE 443
            + WN MI+  +QHGY  +A+ LF  M +    P+ +T   +L+AC+H GLV +GL YFE
Sbjct: 683 DVSWNAMITGYSQHGYGNEAVNLFEKMKQVGEMPNHVTFVGVLSACSHVGLVTKGLGYFE 742

Query: 444 SMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNI 503
           SM+ + G++P   H+AC+++L+++AG   +    +E+MP E D+ +W  L   C +H N+
Sbjct: 743 SMSKEHGLVPKPAHYACVVDLISRAGFLSRARKFIEEMPIEPDATIWRTLLSACTVHKNV 802

Query: 504 DMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEI 563
           ++G      L++  P+ SAT+ LLS++Y+  GK    ++ RQ++  R  KKE   SWIE+
Sbjct: 803 EVGEFAAQHLLELEPEDSATYVLLSNMYAVSGKWDCRDQTRQMMRNRGVKKEPGRSWIEV 862

Query: 564 ENKVHAFSVSDSLHPMRDVLYSVLEQLAGQMGE 596
           +N VHAF V D LHP+ D +Y  L +L  +  E
Sbjct: 863 KNSVHAFYVGDRLHPLADKIYEFLAELNKKAAE 895



 Score =  156 bits (394), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 106/407 (26%), Positives = 189/407 (46%), Gaps = 36/407 (8%)

Query: 125 MLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCN 184
           +L  Y N   +K A  +F      +VV WN M++ + K   + E  + ++ ++   +  N
Sbjct: 355 LLDLYVNCSDIKTAHEMFLTAQTENVVLWNVMLVAFGKLDNLSESFRIFRQMQIKGLIPN 414

Query: 185 EFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFD 244
           +F++  IL  C  +  L L  Q+H QV+ TGF  NV + S ++D YAK G+L  A  +  
Sbjct: 415 QFTYPSILRTCTSVGALDLGEQIHTQVIKTGFQFNVYVCSVLIDMYAKHGKLDTAHVILR 474

Query: 245 ETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALEL 304
                DV++WT ++SGYA+         LF E                        AL+ 
Sbjct: 475 TLTEDDVVSWTALISGYAQ-------HNLFAE------------------------ALKH 503

Query: 305 FTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSK 364
           F  M+   I+ +   FSS + ACA I +L  G+Q+H     + +  +  + ++L+ +Y++
Sbjct: 504 FKEMLNRGIQSDNIGFSSAISACAGIQALNQGRQIHAQSYVSGYSEDLSIGNALVSLYAR 563

Query: 365 CGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAV 424
           CG + +    F+  D K+ S+ WN +IS   Q GY E A+++F  M R+ ++    T   
Sbjct: 564 CGRIKEAYLEFEKIDAKD-SISWNGLISGFAQSGYCEDALKVFAQMNRAKLEASFFTFGS 622

Query: 425 ILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYE 484
            ++A  +   +++G     +M    G   + E    LI   A+ G  +    +  +MP E
Sbjct: 623 AVSAAANIANIKQG-KQIHAMIIKRGFDSDIEVSNALITFYAKCGSIEDARREFCEMP-E 680

Query: 485 HDSYLWNALHGVCRIHGNIDMGRKVVDQL--IDQNPQSSATHGLLSS 529
            +   WNA+      HG  +    + +++  + + P      G+LS+
Sbjct: 681 KNDVSWNAMITGYSQHGYGNEAVNLFEKMKQVGEMPNHVTFVGVLSA 727



 Score =  145 bits (366), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 127/545 (23%), Positives = 237/545 (43%), Gaps = 59/545 (10%)

Query: 9   GINRKNLPNNCLIQSFLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSL 68
           G   +++  N L+  + +L   G L   +   + +  R +R   + ++  +++   ++ L
Sbjct: 40  GFGNESVLCNKLVDVYFAL---GDLDGVVKVFEDMPNRSVRSWDKIISGFMEKKMSNRVL 96

Query: 69  KLGKRVHLHLKLTQRKTPTTF--------LSNHLISMYFKCGSDVDARKVFDKIPVKNLF 120
            L         + +  +PT           S H I + +     + AR +   +    + 
Sbjct: 97  DL-----FSCMIEENVSPTEISFASVLRACSGHRIGIRY--AEQIHARIICHGLLCSPII 149

Query: 121 SYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFS 180
           S N ++  YA  G++  AR +FDN+  +D VSW  MI G++++G  EE +  +  +    
Sbjct: 150 S-NPLIGLYAKNGLIISARKVFDNLCTKDSVSWVAMISGFSQNGYEEEAIHLFCEMHTAG 208

Query: 181 ISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDAR 240
           I    + F+ +L+ C K++   +  Q+H  V   G      + +++V  Y++      A 
Sbjct: 209 IFPTPYVFSSVLSGCTKIKLFDVGEQLHALVFKYGSSLETYVCNALVTLYSRMPNFVSAE 268

Query: 241 RLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQK 300
           ++F +  ++D +++ +++SG A+                                G    
Sbjct: 269 KVFSKMQSKDEVSFNSLISGLAQ-------------------------------QGFSDG 297

Query: 301 ALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLID 360
           ALELFT+M    ++P+  T +S L ACAS  +L  G+Q+H ++I+    S+ IV  +L+D
Sbjct: 298 ALELFTKMKRDYLKPDCVTVASLLSACASNGALCKGEQLHSYVIKAGISSDMIVEGALLD 357

Query: 361 MYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKI 420
           +Y  C  +    ++F LT   EN +LWN M+ A  +     ++ R+F  M    + P++ 
Sbjct: 358 LYVNCSDIKTAHEMF-LTAQTENVVLWNVMLVAFGKLDNLSESFRIFRQMQIKGLIPNQF 416

Query: 421 TLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEK 480
           T   IL  CT  G +  G     +     G   N    + LI++ A+ G  D     L  
Sbjct: 417 TYPSILRTCTSVGALDLG-EQIHTQVIKTGFQFNVYVCSVLIDMYAKHGKLDTAHVILRT 475

Query: 481 MPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYS-----ALG 535
           +  E D   W AL      H       K   +++++  QS    G  S+I +     AL 
Sbjct: 476 LT-EDDVVSWTALISGYAQHNLFAEALKHFKEMLNRGIQSDNI-GFSSAISACAGIQALN 533

Query: 536 KGRLV 540
           +GR +
Sbjct: 534 QGRQI 538



 Score =  143 bits (360), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 117/453 (25%), Positives = 200/453 (44%), Gaps = 69/453 (15%)

Query: 43  LAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCG 102
           +  RGI    +T  ++L  C  S SL   K++H  + L       + L N L+ +YF  G
Sbjct: 1   MEHRGICANCQTYIWLLDLCLNSGSLVECKKLHGKI-LKLGFGNESVLCNKLVDVYFALG 59

Query: 103 SDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAK 162
            D+D                          G++K    +F++M  R V SW+ +I G+ +
Sbjct: 60  -DLD--------------------------GVVK----VFEDMPNRSVRSWDKIISGFME 88

Query: 163 SGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLE-ELKLTRQVHGQVLVTGFLSNVV 221
                  L  +  +   ++S  E SFA +L  C      ++   Q+H +++  G L + +
Sbjct: 89  KKMSNRVLDLFSCMIEENVSPTEISFASVLRACSGHRIGIRYAEQIHARIICHGLLCSPI 148

Query: 222 ISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKN 281
           IS+ ++  YAK G +  AR++FD    +D ++W  M+SG+++ G  E A  LF EM    
Sbjct: 149 ISNPLIGLYAKNGLIISARKVFDNLCTKDSVSWVAMISGFSQNGYEEEAIHLFCEMH--- 205

Query: 282 PVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHG 341
                   AG                     I P  + FSS L  C  I     G+Q+H 
Sbjct: 206 -------TAG---------------------IFPTPYVFSSVLSGCTKIKLFDVGEQLHA 237

Query: 342 FLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDE 401
            + +      T V ++L+ +YS+        +VF    +K+  + +N++IS L Q G+ +
Sbjct: 238 LVFKYGSSLETYVCNALVTLYSRMPNFVSAEKVFSKMQSKDE-VSFNSLISGLAQQGFSD 296

Query: 402 QAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACL 461
            A+ LF  M R  +KPD +T+A +L+AC  +G + +G     S     GI  +      L
Sbjct: 297 GALELFTKMKRDYLKPDCVTVASLLSACASNGALCKG-EQLHSYVIKAGISSDMIVEGAL 355

Query: 462 IELLAQAGCSD-QLMNQLEKMPYEHDSYLWNAL 493
           ++L     CSD +  +++       +  LWN +
Sbjct: 356 LDLYVN--CSDIKTAHEMFLTAQTENVVLWNVM 386


>gi|224099379|ref|XP_002311462.1| predicted protein [Populus trichocarpa]
 gi|222851282|gb|EEE88829.1| predicted protein [Populus trichocarpa]
          Length = 538

 Score =  315 bits (806), Expect = 6e-83,   Method: Compositional matrix adjust.
 Identities = 170/519 (32%), Positives = 270/519 (52%), Gaps = 64/519 (12%)

Query: 135 MKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTI 194
           M++A  +FD + E +   WN M  GY+++ + ++ +  ++ ++   +  N F+F  IL  
Sbjct: 1   MENAHKVFDQIPEPNASIWNAMFRGYSQNESHKDVIVLFRQMKGLDVMPNCFTFPVILKS 60

Query: 195 CVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAK---------------------- 232
           CVK+  LK   +VH  V+ +GF +N  ++++++D YA                       
Sbjct: 61  CVKINALKEGEEVHCFVIKSGFRANPFVATTLIDMYASGGAIHAAYRVFGEMIERNVIAW 120

Query: 233 ---------CGELSDARRLFDETDARDVLTWTTMVSGY---------------------- 261
                    C +L  ARRLFD    RD++ W TM+SGY                      
Sbjct: 121 TAMINGYITCCDLVTARRLFDLAPERDIVLWNTMISGYIEAKDVIRARELFDKMPNKDVM 180

Query: 262 ---------AKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMI-L 311
                    A  GD+ +  +LF EMPE+N  SW  LI GYTRNG   + L  F RM++  
Sbjct: 181 SWNTVLNGYASNGDVMACERLFEEMPERNVFSWNALIGGYTRNGCFSEVLSAFKRMLVDG 240

Query: 312 RIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDG 371
            + PN  T  + L ACA + +L  GK VH +     ++ N  V ++L+DMY+KCG +   
Sbjct: 241 TVVPNDATLVNVLSACARLGALDLGKWVHVYAESHGYKGNVYVRNALMDMYAKCGVVETA 300

Query: 372 RQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTH 431
             VF   DNK+  + WNT+I  L  HG+   A+ LF  M  +   PD IT   IL ACTH
Sbjct: 301 LDVFKSMDNKD-LISWNTIIGGLAVHGHGADALNLFSHMKIAGENPDGITFIGILCACTH 359

Query: 432 SGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWN 491
            GLV++G +YF+SMT D  I+P  EH+ C+++LL +AG     ++ + KMP E D+ +W 
Sbjct: 360 MGLVEDGFSYFKSMTDDYSIVPRIEHYGCIVDLLGRAGLLAHAVDFIRKMPIEADAVIWA 419

Query: 492 ALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQ 551
           AL G CR++ N+++    +++LI+  P++ A + +LS+IY   G+ + V +++  + +  
Sbjct: 420 ALLGACRVYKNVELAELALEKLIEFEPKNPANYVMLSNIYGDFGRWKDVARLKVAMRDTG 479

Query: 552 FKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQL 590
           FKK    S IE+ + +  F   D  HP ++ +Y  L  L
Sbjct: 480 FKKLPGCSLIEVNDYLVEFYSLDERHPEKEQIYGTLRTL 518



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 77/248 (31%), Positives = 125/248 (50%), Gaps = 32/248 (12%)

Query: 90  LSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERD 149
           L N +IS Y +    + AR++FDK+P K++ S+N +L+GYA+ G +     LF+ M ER+
Sbjct: 150 LWNTMISGYIEAKDVIRARELFDKMPNKDVMSWNTVLNGYASNGDVMACERLFEEMPERN 209

Query: 150 VVSWNTMIIGYAKSGAVEEGLK-FYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVH 208
           V SWN +I GY ++G   E L  F ++L   ++  N+ +   +L+ C +L  L L + VH
Sbjct: 210 VFSWNALIGGYTRNGCFSEVLSAFKRMLVDGTVVPNDATLVNVLSACARLGALDLGKWVH 269

Query: 209 GQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDME 268
                 G+  NV + ++++D YAKCG +  A  +F   D +D+++W T++ G A      
Sbjct: 270 VYAESHGYKGNVYVRNALMDMYAKCGVVETALDVFKSMDNKDLISWNTIIGGLAV----- 324

Query: 269 SASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACA 328
                                     +G G  AL LF+ M I    P+  TF   LCAC 
Sbjct: 325 --------------------------HGHGADALNLFSHMKIAGENPDGITFIGILCACT 358

Query: 329 SIVSLKHG 336
            +  ++ G
Sbjct: 359 HMGLVEDG 366


>gi|449443492|ref|XP_004139511.1| PREDICTED: pentatricopeptide repeat-containing protein At3g24000,
           mitochondrial-like [Cucumis sativus]
          Length = 678

 Score =  314 bits (805), Expect = 7e-83,   Method: Compositional matrix adjust.
 Identities = 179/547 (32%), Positives = 285/547 (52%), Gaps = 66/547 (12%)

Query: 51  PAETL-AFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARK 109
           P  TL + +L +C   + LK G+ +H H++ +  +     L N +++MY KCGS      
Sbjct: 103 PERTLYSKMLNKCTYLRKLKQGRAIHAHIQSSTFEDDLVLL-NFILNMYAKCGS------ 155

Query: 110 VFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEG 169
                                    ++ A++LFD M  +D+VSW  +I GY++SG   E 
Sbjct: 156 -------------------------LEEAQDLFDKMPTKDMVSWTVLISGYSQSGQASEA 190

Query: 170 LKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDA 229
           L  +  +       NEF+ + +L            RQ+H   L  G+  NV + SS++D 
Sbjct: 191 LALFPKMLHLGFQPNEFTLSSLLKASGTGPSDHHGRQLHAFSLKYGYDMNVHVGSSLLDM 250

Query: 230 YAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLI 289
           YA+                     W            M  A  +FN +  KN VSW  LI
Sbjct: 251 YAR---------------------W----------AHMREAKVIFNSLAAKNVVSWNALI 279

Query: 290 AGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFR 349
           AG+ R G G+  + LF +M+     P   T+SS   ACAS  SL+ GK VH  +I++  +
Sbjct: 280 AGHARKGEGEHVMRLFLQMLRQGFEPTHFTYSSVFTACASSGSLEQGKWVHAHVIKSGGQ 339

Query: 350 SNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHD 409
               + ++LIDMY+K G + D ++VF     K++ + WN++IS   QHG   +A++LF  
Sbjct: 340 PIAYIGNTLIDMYAKSGSIKDAKKVFRRL-VKQDIVSWNSIISGYAQHGLGAEALQLFEQ 398

Query: 410 MVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAG 469
           M+++ V+P++IT   +L AC+HSGL+ EG  YFE M     I     HH  +++LL +AG
Sbjct: 399 MLKAKVQPNEITFLSVLTACSHSGLLDEGQYYFELMKKH-KIEAQVAHHVTVVDLLGRAG 457

Query: 470 CSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSS 529
             ++    +E+MP +  + +W AL G CR+H N+D+G    +Q+ + +P  S  H LLS+
Sbjct: 458 RLNEANKFIEEMPIKPTAAVWGALLGSCRMHKNMDLGVYAAEQIFELDPHDSGPHVLLSN 517

Query: 530 IYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQ 589
           IY++ G+     KVR+++ E   KKE A SW+EIEN+VH F  +D  HPMR+ +  + E+
Sbjct: 518 IYASAGRLSDAAKVRKMMKESGVKKEPACSWVEIENEVHVFVANDDSHPMREEIQRMWEK 577

Query: 590 LAGQMGE 596
           ++G++ E
Sbjct: 578 ISGKIKE 584



 Score =  115 bits (287), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 78/367 (21%), Positives = 155/367 (42%), Gaps = 63/367 (17%)

Query: 31  GQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFL 90
           GQ SEA++    +   G +    TL+ +L+      S   G+++H    L         +
Sbjct: 185 GQASEALALFPKMLHLGFQPNEFTLSSLLKASGTGPSDHHGRQLHA-FSLKYGYDMNVHV 243

Query: 91  SNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDV 150
            + L+ MY +     +A+ +F+ +  KN+ S+N +++G+A  G  +H   LF  M     
Sbjct: 244 GSSLLDMYARWAHMREAKVIFNSLAAKNVVSWNALIAGHARKGEGEHVMRLFLQML---- 299

Query: 151 VSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQ 210
                                      R       F+++ + T C     L+  + VH  
Sbjct: 300 ---------------------------RQGFEPTHFTYSSVFTACASSGSLEQGKWVHAH 332

Query: 211 VLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESA 270
           V+ +G      I ++++D YAK G + DA+++F     +D+++W +++SGYA+       
Sbjct: 333 VIKSGGQPIAYIGNTLIDMYAKSGSIKDAKKVFRRLVKQDIVSWNSIISGYAQ------- 385

Query: 271 SKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASI 330
                                   +GLG +AL+LF +M+  +++PN+ TF S L AC+  
Sbjct: 386 ------------------------HGLGAEALQLFEQMLKAKVQPNEITFLSVLTACSHS 421

Query: 331 VSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTM 390
             L  G+     + +    +      +++D+  + G LN+  +  +    K  + +W  +
Sbjct: 422 GLLDEGQYYFELMKKHKIEAQVAHHVTVVDLLGRAGRLNEANKFIEEMPIKPTAAVWGAL 481

Query: 391 ISALTQH 397
           + +   H
Sbjct: 482 LGSCRMH 488



 Score = 79.0 bits (193), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 45/156 (28%), Positives = 86/156 (55%), Gaps = 5/156 (3%)

Query: 30  KGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTF 89
           KG+    +     + ++G      T + +   CA S SL+ GK VH H+ +     P  +
Sbjct: 285 KGEGEHVMRLFLQMLRQGFEPTHFTYSSVFTACASSGSLEQGKWVHAHV-IKSGGQPIAY 343

Query: 90  LSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERD 149
           + N LI MY K GS  DA+KVF ++  +++ S+N+++SGYA  G+   A  LF+ M +  
Sbjct: 344 IGNTLIDMYAKSGSIKDAKKVFRRLVKQDIVSWNSIISGYAQHGLGAEALQLFEQMLKAK 403

Query: 150 V----VSWNTMIIGYAKSGAVEEGLKFYKVLRRFSI 181
           V    +++ +++   + SG ++EG  +++++++  I
Sbjct: 404 VQPNEITFLSVLTACSHSGLLDEGQYYFELMKKHKI 439


>gi|356561772|ref|XP_003549152.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g33350-like [Glycine max]
          Length = 522

 Score =  314 bits (805), Expect = 7e-83,   Method: Compositional matrix adjust.
 Identities = 168/467 (35%), Positives = 265/467 (56%), Gaps = 11/467 (2%)

Query: 132 LGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLK--FYKVLRRFSISCNEFSFA 189
           L  + +AR +FD++   +   +  MI  YA   A        F  +LR      N F F 
Sbjct: 52  LSNLTYARLIFDHIPSLNTHLFTAMITAYAAHPATHPSALSLFRHMLRSQPPRPNHFIFP 111

Query: 190 GILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKC-GELSDARRLFDETDA 248
             L  C    E      +H Q++ +GF    V+ +++VD+Y+K  G L +A+++FDE   
Sbjct: 112 HALKTC---PESCAAESLHAQIVKSGFHEYPVVQTALVDSYSKVSGGLGNAKKVFDEMSD 168

Query: 249 RDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRM 308
           R V+++T MVSG+A++GD+ESA ++F EM +++  SW  LIAG T+NG   + +ELF RM
Sbjct: 169 RSVVSFTAMVSGFARVGDVESAVRVFGEMLDRDVPSWNALIAGCTQNGAFTQGIELFRRM 228

Query: 309 MILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCL 368
           +    RPN  T    L AC  +  L+ G+ +HG++ +     ++ V+++L+DMY KCG L
Sbjct: 229 VFECNRPNGVTVVCALSACGHMGMLQLGRWIHGYVYKNGLAFDSFVLNALVDMYGKCGSL 288

Query: 369 NDGRQVFDLTDNKENSML-WNTMISALTQHGYDEQAIRLFHDMVRSS--VKPDKITLAVI 425
              R+VF++  N E  +  WN+MI+    HG  + AI +F  MV     V+PD++T   +
Sbjct: 289 GKARKVFEM--NPEKGLTSWNSMINCFALHGQSDSAIAIFEQMVEGGGGVRPDEVTFVGL 346

Query: 426 LNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEH 485
           LNACTH GLV++G  YFE M  + GI P  EH+ CLI+LL +AG  D+ M+ ++ M  E 
Sbjct: 347 LNACTHGGLVEKGYWYFEMMVQEYGIEPQIEHYGCLIDLLGRAGRFDEAMDVVKGMSMEP 406

Query: 486 DSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQ 545
           D  +W +L   C++HG  D+      +LI+ +P +     +L+++Y  LGK   V  V +
Sbjct: 407 DEVVWGSLLNGCKVHGRTDLAEFAAKKLIEIDPHNGGYRIMLANVYGELGKWDEVRNVWR 466

Query: 546 LINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAG 592
            + +++  K    SWIE++++VH F   D  +P  + LY VLE L G
Sbjct: 467 TLKQQKSYKVPGCSWIEVDDQVHQFYSLDKSNPKTEDLYIVLESLVG 513



 Score =  121 bits (304), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 80/315 (25%), Positives = 147/315 (46%), Gaps = 37/315 (11%)

Query: 94  LISMYFKC-GSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVS 152
           L+  Y K  G   +A+KVFD++  +++ S+  M+SG+A +G ++ A  +F  M +RDV S
Sbjct: 145 LVDSYSKVSGGLGNAKKVFDEMSDRSVVSFTAMVSGFARVGDVESAVRVFGEMLDRDVPS 204

Query: 153 WNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNE---FSFAGILTICVKLEELKLTRQVHG 209
           WN +I G  ++GA  +G++ +   RR    CN     +    L+ C  +  L+L R +HG
Sbjct: 205 WNALIAGCTQNGAFTQGIELF---RRMVFECNRPNGVTVVCALSACGHMGMLQLGRWIHG 261

Query: 210 QVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMES 269
            V   G   +  + +++VD Y KCG L  AR++F+    + + +W +M++ +A  G  +S
Sbjct: 262 YVYKNGLAFDSFVLNALVDMYGKCGSLGKARKVFEMNPEKGLTSWNSMINCFALHGQSDS 321

Query: 270 ASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACAS 329
           A  +F +M E                G G              +RP++ TF   L AC  
Sbjct: 322 AIAIFEQMVE---------------GGGG--------------VRPDEVTFVGLLNACTH 352

Query: 330 IVSLKHGKQVHGFLIRT-NFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWN 388
              ++ G      +++             LID+  + G  ++   V      + + ++W 
Sbjct: 353 GGLVEKGYWYFEMMVQEYGIEPQIEHYGCLIDLLGRAGRFDEAMDVVKGMSMEPDEVVWG 412

Query: 389 TMISALTQHGYDEQA 403
           ++++    HG  + A
Sbjct: 413 SLLNGCKVHGRTDLA 427



 Score = 58.9 bits (141), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 39/129 (30%), Positives = 66/129 (51%), Gaps = 7/129 (5%)

Query: 54  TLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDK 113
           T+   L  C     L+LG+ +H ++         +F+ N L+ MY KCGS   ARKVF+ 
Sbjct: 239 TVVCALSACGHMGMLQLGRWIHGYV-YKNGLAFDSFVLNALVDMYGKCGSLGKARKVFEM 297

Query: 114 IPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAE------RDVVSWNTMIIGYAKSGAVE 167
            P K L S+N+M++ +A  G    A  +F+ M E       D V++  ++      G VE
Sbjct: 298 NPEKGLTSWNSMINCFALHGQSDSAIAIFEQMVEGGGGVRPDEVTFVGLLNACTHGGLVE 357

Query: 168 EGLKFYKVL 176
           +G  +++++
Sbjct: 358 KGYWYFEMM 366


>gi|225428117|ref|XP_002278375.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62260,
           mitochondrial [Vitis vinifera]
          Length = 681

 Score =  314 bits (805), Expect = 8e-83,   Method: Compositional matrix adjust.
 Identities = 195/612 (31%), Positives = 314/612 (51%), Gaps = 88/612 (14%)

Query: 27  LISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTP 86
           LI  G+++EA +  D + QR I      +   +++   +K+ KL        ++  R   
Sbjct: 77  LIRNGRINEARALFDAMPQRNIVTWNSMITGYVRRREMAKARKLFD------EMPDRDVV 130

Query: 87  TTFLSNHLISMYFKC-GSDVD-ARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDN 144
           +    N +IS Y  C G  V+  R +FD++P ++  S+N M+SGY   G M  A  LFD+
Sbjct: 131 SW---NLMISGYVSCQGRWVEEGRHLFDEMPERDCVSWNTMISGYTRSGRMDEALQLFDS 187

Query: 145 MAERDVVSWNTMIIGYAKSGAVEEGLKFY-KVLRRFSISCNEFSFAGILTICVKLEELK- 202
           M ER+VVSWN M+ G+ ++G VE  ++F+ ++  R S S +    AG++    +L+E K 
Sbjct: 188 MQERNVVSWNAMVTGFLQNGDVERAIEFFMRMPERDSASLSAL-VAGLIQNG-ELDEAKR 245

Query: 203 --LT--RQ-------VHG-QVLVTG-----------------------------FLSNVV 221
             LT  RQ       VH   +L+ G                             F  NVV
Sbjct: 246 ILLTSRRQDDDKGDLVHAYNILLAGYGQNGRVDKARQLFDQIPFYDGGQKDGGRFERNVV 305

Query: 222 ISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMP--- 278
             +S++  Y K  ++  AR LFD+   RD ++W TM+SGY ++ DME A  LF EMP   
Sbjct: 306 SWNSMIMCYVKARDIFSARVLFDQMKERDTISWNTMISGYVRMSDMEEAWMLFQEMPNPD 365

Query: 279 ----------------------------EKNPVSWTTLIAGYTRNGLGQKALELFTRMMI 310
                                       +KN VSW ++IAGY  NG  + A EL+ +M++
Sbjct: 366 TLTWNSMISGFAQKGNLELARALFATIPQKNLVSWNSMIAGYENNGDYKGATELYRQMLL 425

Query: 311 LRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLND 370
              +P++HT SS L  C+   +L  G Q+H  + +T    +  + +SLI MYS+CG + +
Sbjct: 426 QGEKPDRHTLSSVLSVCSGFAALHLGMQIHQQITKTVI-PDIPINNSLITMYSRCGAIVE 484

Query: 371 GRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACT 430
            R +FD    ++  + WN MI     HG+   A+ LF  M R  V+P  IT   +LNAC 
Sbjct: 485 ARTIFDEVKLQKEVISWNAMIGGYAFHGFAADALELFELMKRLKVRPTYITFISVLNACA 544

Query: 431 HSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLW 490
           H+G V+EG  +F+SM  + GI P  EH A L++++ + G  ++ M+ +  MP+E D  +W
Sbjct: 545 HAGFVKEGRMHFKSMACEFGIEPRIEHFASLVDIVGRHGQLEEAMDLINSMPFEPDKAVW 604

Query: 491 NALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINER 550
            AL G CR+H N+++ R   + L+   P+SSA + LL ++Y+ +G+     ++R ++   
Sbjct: 605 GALLGACRVHNNVELARVAAEALMKLEPESSAPYVLLHNMYADVGQWDNATEMRMMMERN 664

Query: 551 QFKKEQAISWIE 562
             +K+   SW++
Sbjct: 665 NIRKQPGYSWVD 676



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 126/507 (24%), Positives = 217/507 (42%), Gaps = 122/507 (24%)

Query: 75  HLHLKLTQRKTPTTFLS------NHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSG 128
           HLH  ++  + P   +S      N  IS   + G   +AR +FD +P +N+ ++N+M++G
Sbjct: 48  HLHCFVSTLQQPKNSVSLDLYTPNKRISHLIRNGRINEARALFDAMPQRNIVTWNSMITG 107

Query: 129 YANLGMMKHARNLFDNMAERDVVSWNTMIIGYA--KSGAVEEGLKFY-KVLRRFSISCNE 185
           Y     M  AR LFD M +RDVVSWN MI GY   +   VEEG   + ++  R  +S N 
Sbjct: 108 YVRRREMAKARKLFDEMPDRDVVSWNLMISGYVSCQGRWVEEGRHLFDEMPERDCVSWNT 167

Query: 186 ----FSFAGILTICVKL-EELKLTRQVHGQVLVTGFLSNVVISSSI-------------- 226
               ++ +G +   ++L + ++    V    +VTGFL N  +  +I              
Sbjct: 168 MISGYTRSGRMDEALQLFDSMQERNVVSWNAMVTGFLQNGDVERAIEFFMRMPERDSASL 227

Query: 227 ---------------------------------VDAY-------AKCGELSDARRLFDET 246
                                            V AY        + G +  AR+LFD+ 
Sbjct: 228 SALVAGLIQNGELDEAKRILLTSRRQDDDKGDLVHAYNILLAGYGQNGRVDKARQLFDQI 287

Query: 247 D------------ARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTR 294
                         R+V++W +M+  Y K  D+ SA  LF++M E++ +SW T+I+GY R
Sbjct: 288 PFYDGGQKDGGRFERNVVSWNSMIMCYVKARDIFSARVLFDQMKERDTISWNTMISGYVR 347

Query: 295 NGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIV 354
               ++A  LF  M      PN                                  +T+ 
Sbjct: 348 MSDMEEAWMLFQEM------PN---------------------------------PDTLT 368

Query: 355 MSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSS 414
            +S+I  +++ G L   R +F  T  ++N + WN+MI+    +G  + A  L+  M+   
Sbjct: 369 WNSMISGFAQKGNLELARALF-ATIPQKNLVSWNSMIAGYENNGDYKGATELYRQMLLQG 427

Query: 415 VKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQL 474
            KPD+ TL+ +L+ C+    +  G+   + +T    +IP+   +  LI + ++ G   + 
Sbjct: 428 EKPDRHTLSSVLSVCSGFAALHLGMQIHQQITKT--VIPDIPINNSLITMYSRCGAIVEA 485

Query: 475 MNQLEKMPYEHDSYLWNALHGVCRIHG 501
               +++  + +   WNA+ G    HG
Sbjct: 486 RTIFDEVKLQKEVISWNAMIGGYAFHG 512


>gi|449454362|ref|XP_004144924.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62260,
           mitochondrial-like [Cucumis sativus]
          Length = 664

 Score =  314 bits (805), Expect = 8e-83,   Method: Compositional matrix adjust.
 Identities = 172/540 (31%), Positives = 286/540 (52%), Gaps = 70/540 (12%)

Query: 92  NHLISMYFKCGSDV--DARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERD 149
           N ++S Y  CG      AR +FD++P  +  S+N MLSGYA  GMM  A  LF+ M ER+
Sbjct: 123 NLMLSGYISCGGKFVERARNMFDQMPETDCVSWNTMLSGYAKSGMMDKAEELFNEMPERN 182

Query: 150 VVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHG 209
           VVSWN M+ GY  +G VE+ ++F+K++ +   +      +G++     +E  ++  Q  G
Sbjct: 183 VVSWNAMVSGYLMNGHVEKAIEFFKLMPKRDSASLRALISGLIQNDKLVEAERILLQYGG 242

Query: 210 QV-----------LVTGF-------------------------LSNVVISSSIVDAYAKC 233
            V           L+ G+                           NV+  +S++  Y + 
Sbjct: 243 NVGKGDLVDAYNTLIAGYGQKGMAYEARKLFDRIPLCCDCGYSRRNVISWNSMIMCYVRA 302

Query: 234 GELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPE-------------- 279
           G++  AR LFD+   RD  +W TM+SGY ++ DM+ AS LF+ MPE              
Sbjct: 303 GDIVSARELFDKMVERDTFSWNTMISGYVQILDMKEASNLFSRMPEPDTLSWNMMISGFS 362

Query: 280 -----------------KNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSS 322
                            K+ VSW ++I+GY +N   + A+ +F +M +   +P++HT SS
Sbjct: 363 EIGSLKLAHDLFKRIPEKSLVSWNSMISGYEKNEDYKGAMNIFLQMQLEGKKPDRHTLSS 422

Query: 323 CLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKE 382
            L ACA +V L  G Q+H  L+   F ++  + +SL+ MYS+CG + + R VFD  + + 
Sbjct: 423 ILSACAGLVDLVLGTQIHQ-LVTKAFIADLPINNSLVTMYSRCGAIVEARMVFDEMNLQR 481

Query: 383 NSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYF 442
           + + WN MI     HG+  +A++LF  M + +V+P  IT   +LNAC H+GL++EG   F
Sbjct: 482 DVISWNAMIGGYAYHGFATEALQLFDLMKQCNVQPSYITFISVLNACAHAGLIEEGRREF 541

Query: 443 ESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGN 502
            SM +  GI P  EH+A L++++ + G  ++ M+ +  MP E D  +W AL G C++H N
Sbjct: 542 NSMVNTHGIKPQVEHYAALVDIIGRHGQLEEAMSLINSMPCEPDKAVWGALLGACKVHNN 601

Query: 503 IDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIE 562
           ++M R   + L+   P+SSA + LL ++Y+ +G+     ++R ++ +   +K+   S ++
Sbjct: 602 VEMARAAAEALMKLQPESSAPYVLLHNMYADVGRWDDAAEMRTMMEKNNVQKDAGYSRVD 661



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 130/542 (23%), Positives = 222/542 (40%), Gaps = 119/542 (21%)

Query: 79  KLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHA 138
           K    + P  +  N  IS   + G   +AR++FD     N  ++N M++ Y     M  A
Sbjct: 48  KANSFQVPEFYSLNKKISYLIRTGRINEARELFDSTEHWNTITWNRMITAYVKRREMLKA 107

Query: 139 RNLFDNMAERDVVS---------------------------------WNTMIIGYAKSGA 165
           R LF+ M  RD+VS                                 WNTM+ GYAKSG 
Sbjct: 108 RQLFEEMPNRDIVSWNLMLSGYISCGGKFVERARNMFDQMPETDCVSWNTMLSGYAKSGM 167

Query: 166 VEEGLK-FYKVLRRFSISCNEFSFAGILTICVK--LEELKLTRQVHG---QVLVTGFLSN 219
           +++  + F ++  R  +S N      ++   V+  +E  KL  +      + L++G + N
Sbjct: 168 MDKAEELFNEMPERNVVSWNAMVSGYLMNGHVEKAIEFFKLMPKRDSASLRALISGLIQN 227

Query: 220 ----------------------VVISSSIVDAYAKCGELSDARRLFDET--------DAR 249
                                 V   ++++  Y + G   +AR+LFD            R
Sbjct: 228 DKLVEAERILLQYGGNVGKGDLVDAYNTLIAGYGQKGMAYEARKLFDRIPLCCDCGYSRR 287

Query: 250 DVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMM 309
           +V++W +M+  Y + GD+ SA +LF++M E++  SW T+I+GY +    ++A  LF+RM 
Sbjct: 288 NVISWNSMIMCYVRAGDIVSARELFDKMVERDTFSWNTMISGYVQILDMKEASNLFSRM- 346

Query: 310 ILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLN 369
                P   T S                                  + +I  +S+ G L 
Sbjct: 347 -----PEPDTLS---------------------------------WNMMISGFSEIGSLK 368

Query: 370 DGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNAC 429
               +F     K + + WN+MIS   ++   + A+ +F  M     KPD+ TL+ IL+AC
Sbjct: 369 LAHDLFKRIPEK-SLVSWNSMISGYEKNEDYKGAMNIFLQMQLEGKKPDRHTLSSILSAC 427

Query: 430 THSGLVQEGLTYFESMTHDL---GIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHD 486
             +GLV   L    +  H L     I +   +  L+ + ++ G   +     ++M  + D
Sbjct: 428 --AGLVDLVLG---TQIHQLVTKAFIADLPINNSLVTMYSRCGAIVEARMVFDEMNLQRD 482

Query: 487 SYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQL 546
              WNA+ G    HG      ++ D +   N Q S  +    S+ +A     L+E+ R+ 
Sbjct: 483 VISWNAMIGGYAYHGFATEALQLFDLMKQCNVQPS--YITFISVLNACAHAGLIEEGRRE 540

Query: 547 IN 548
            N
Sbjct: 541 FN 542



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 51/168 (30%), Positives = 93/168 (55%), Gaps = 12/168 (7%)

Query: 13  KNLPNNCLIQSFLSLISKGQLSEAI-SSLDLLAQ---RGIRLPAETLAFILQQCAESKSL 68
           K +P   L+ S+ S+IS  + +E    ++++  Q    G +    TL+ IL  CA    L
Sbjct: 375 KRIPEKSLV-SWNSMISGYEKNEDYKGAMNIFLQMQLEGKKPDRHTLSSILSACAGLVDL 433

Query: 69  KLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPV-KNLFSYNNMLS 127
            LG ++H    +T+       ++N L++MY +CG+ V+AR VFD++ + +++ S+N M+ 
Sbjct: 434 VLGTQIHQ--LVTKAFIADLPINNSLVTMYSRCGAIVEARMVFDEMNLQRDVISWNAMIG 491

Query: 128 GYANLGMMKHARNLFDNMAERDV----VSWNTMIIGYAKSGAVEEGLK 171
           GYA  G    A  LFD M + +V    +++ +++   A +G +EEG +
Sbjct: 492 GYAYHGFATEALQLFDLMKQCNVQPSYITFISVLNACAHAGLIEEGRR 539


>gi|297736926|emb|CBI26127.3| unnamed protein product [Vitis vinifera]
          Length = 603

 Score =  314 bits (805), Expect = 8e-83,   Method: Compositional matrix adjust.
 Identities = 176/546 (32%), Positives = 286/546 (52%), Gaps = 30/546 (5%)

Query: 54  TLAFILQQCAESKSLKLGKRVHLHLKLT--QRKTPTTFLSNHLISMYFKCGSDVDARKVF 111
           T    L  CA    L+ G ++H  + ++  Q   P   + N LI MY KC S   AR+VF
Sbjct: 73  TFTATLSACAGLGELRRGMKIHAQVVVSGCQSSLP---VGNSLIDMYGKCLSATSARRVF 129

Query: 112 DKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLK 171
           +++ + N  S+ ++L  Y + G+   AR +FD M ++  ++WN MI GY + G VE  L 
Sbjct: 130 EEMSIMNEVSWCSLLFAYTSSGLFDVARVVFDGMPKKVEIAWNIMISGYGQCGDVELCLG 189

Query: 172 FYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYA 231
            +K +R  S+  ++++F+ ++    +L+E      +HG ++ +G+               
Sbjct: 190 LFKKMREDSLQPDQWTFSALVNALCELQEPSYGYMMHGFIIKSGW--------------- 234

Query: 232 KCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAG 291
                 D  ++F+       ++W  M+  + K+GD   A  +F   PEKN VSWT++I G
Sbjct: 235 -----DDVMKVFESIGILTQVSWNAMIDAHMKIGDTHEAFLVFQLAPEKNVVSWTSMITG 289

Query: 292 YTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSN 351
           Y RNG G++AL  F +MM   I+P+  TF + L AC+S+ +L HGK +HG +I   F + 
Sbjct: 290 YARNGHGEQALSFFVKMMENHIQPDDFTFGAVLHACSSLATLGHGKMIHGSIIHYGFHAY 349

Query: 352 TIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMV 411
             V + L++MY+KCG +      F     K + + WN M+  L  HG+  QA+ L+ +MV
Sbjct: 350 VDVGNGLVNMYAKCGDIQGSNTAFKEILGK-DLVSWNAMLFGLGMHGHATQALELYEEMV 408

Query: 412 RSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGC- 470
            S +KPDK+T   +L  C+HSGL+++G   FESM    G+    EH  C+++LL + G  
Sbjct: 409 ASGMKPDKVTFIGLLMTCSHSGLIEKGQALFESMVSVYGLSQETEHVVCMVDLLGRGGYL 468

Query: 471 --SDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLS 528
             + +L+++  +      S L  AL G C  H  + MG  + + L    PQ   ++ LLS
Sbjct: 469 AQARELVDEYSRTGRAETS-LPEALLGACFAHSEVRMGANLGEYLKVFEPQKEMSYVLLS 527

Query: 529 SIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLE 588
           ++Y   G+ +  E VR+ + +   KK    SWIE+ NKV  F   +  HP  + L  +L 
Sbjct: 528 NLYCVSGQWKEAEMVRKTMTDHGVKKMPGCSWIEVRNKVTVFVAGNHSHPYMEELCKILN 587

Query: 589 QLAGQM 594
            L  +M
Sbjct: 588 FLKFEM 593



 Score =  189 bits (479), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 119/424 (28%), Positives = 214/424 (50%), Gaps = 18/424 (4%)

Query: 118 NLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLR 177
           +LF   + +   A LG +  AR LFD M  +D V+WN M+  Y++ G  ++ L  +  +R
Sbjct: 4   HLFQTTSKIVALAKLGRITSARRLFDEMPHKDTVAWNAMLASYSQLGLHQQALCLFHHMR 63

Query: 178 RFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELS 237
             +   + F+F   L+ C  L EL+   ++H QV+V+G  S++ + +S++D Y KC   +
Sbjct: 64  IANSRPDRFTFTATLSACAGLGELRRGMKIHAQVVVSGCQSSLPVGNSLIDMYGKCLSAT 123

Query: 238 DARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGL 297
            ARR+F+E    + ++W +++  Y   G  + A  +F+ MP+K  ++W  +I+GY + G 
Sbjct: 124 SARRVFEEMSIMNEVSWCSLLFAYTSSGLFDVARVVFDGMPKKVEIAWNIMISGYGQCGD 183

Query: 298 GQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTN-------FRS 350
            +  L LF +M    ++P+Q TFS+ + A   +    +G  +HGF+I++        F S
Sbjct: 184 VELCLGLFKKMREDSLQPDQWTFSALVNALCELQEPSYGYMMHGFIIKSGWDDVMKVFES 243

Query: 351 NTIV----MSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRL 406
             I+     +++ID + K G  ++   VF L   K N + W +MI+   ++G+ EQA+  
Sbjct: 244 IGILTQVSWNAMIDAHMKIGDTHEAFLVFQLAPEK-NVVSWTSMITGYARNGHGEQALSF 302

Query: 407 FHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLA 466
           F  M+ + ++PD  T   +L+AC+    +  G     S+ H  G     +    L+ + A
Sbjct: 303 FVKMMENHIQPDDFTFGAVLHACSSLATLGHGKMIHGSIIH-YGFHAYVDVGNGLVNMYA 361

Query: 467 QAGCSD-QLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLI--DQNPQSSAT 523
           +  C D Q  N   K     D   WNA+     +HG+     ++ ++++     P     
Sbjct: 362 K--CGDIQGSNTAFKEILGKDLVSWNAMLFGLGMHGHATQALELYEEMVASGMKPDKVTF 419

Query: 524 HGLL 527
            GLL
Sbjct: 420 IGLL 423



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 71/241 (29%), Positives = 110/241 (45%), Gaps = 61/241 (25%)

Query: 218 SNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEM 277
           S++  ++S + A AK G ++ ARRLFDE   +D + W  M++ Y++L             
Sbjct: 3   SHLFQTTSKIVALAKLGRITSARRLFDEMPHKDTVAWNAMLASYSQL------------- 49

Query: 278 PEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGK 337
                             GL Q+AL LF  M I   RP++ TF++ L ACA +  L+ G 
Sbjct: 50  ------------------GLHQQALCLFHHMRIANSRPDRFTFTATLSACAGLGELRRGM 91

Query: 338 QVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFD--------------------- 376
           ++H  ++ +  +S+  V +SLIDMY KC      R+VF+                     
Sbjct: 92  KIHAQVVVSGCQSSLPVGNSLIDMYGKCLSATSARRVFEEMSIMNEVSWCSLLFAYTSSG 151

Query: 377 LTD---------NKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILN 427
           L D          K+  + WN MIS   Q G  E  + LF  M   S++PD+ T + ++N
Sbjct: 152 LFDVARVVFDGMPKKVEIAWNIMISGYGQCGDVELCLGLFKKMREDSLQPDQWTFSALVN 211

Query: 428 A 428
           A
Sbjct: 212 A 212


>gi|15221566|ref|NP_177059.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75333633|sp|Q9CAA8.1|PP108_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At1g68930
 gi|12323213|gb|AAG51585.1|AC011665_6 hypothetical protein [Arabidopsis thaliana]
 gi|332196743|gb|AEE34864.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 743

 Score =  314 bits (804), Expect = 9e-83,   Method: Compositional matrix adjust.
 Identities = 176/581 (30%), Positives = 312/581 (53%), Gaps = 38/581 (6%)

Query: 11  NRKNLPNNCLIQSFLSLISKGQLSEAISSLD-LLAQRGIRLPAETLAFILQQCAESKSLK 69
           +R  +  N LI+ + SL   G +  A+ + + ++      L   TL  +L+  + +  + 
Sbjct: 100 DRDGVTWNVLIEGY-SL--SGLVGAAVKAYNTMMRDFSANLTRVTLMTMLKLSSSNGHVS 156

Query: 70  LGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGY 129
           LGK++H  + +         + + L+ MY   G   DA+KVF  +  +N   YN+++ G 
Sbjct: 157 LGKQIHGQV-IKLGFESYLLVGSPLLYMYANVGCISDAKKVFYGLDDRNTVMYNSLMGGL 215

Query: 130 ANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFA 189
              GM++ A  LF  M E+D VSW  MI G A++G  +E ++ ++ ++   +  +++ F 
Sbjct: 216 LACGMIEDALQLFRGM-EKDSVSWAAMIKGLAQNGLAKEAIECFREMKVQGLKMDQYPFG 274

Query: 190 GILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDAR 249
            +L  C  L  +   +Q+H  ++ T F  ++ + S+++D Y KC  L  A+ +FD     
Sbjct: 275 SVLPACGGLGAINEGKQIHACIIRTNFQDHIYVGSALIDMYCKCKCLHYAKTVFDR---- 330

Query: 250 DVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMM 309
                                      M +KN VSWT ++ GY + G  ++A+++F  M 
Sbjct: 331 ---------------------------MKQKNVVSWTAMVVGYGQTGRAEEAVKIFLDMQ 363

Query: 310 ILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLN 369
              I P+ +T    + ACA++ SL+ G Q HG  I +       V +SL+ +Y KCG ++
Sbjct: 364 RSGIDPDHYTLGQAISACANVSSLEEGSQFHGKAITSGLIHYVTVSNSLVTLYGKCGDID 423

Query: 370 DGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNAC 429
           D  ++F+   N  +++ W  M+SA  Q G   + I+LF  MV+  +KPD +TL  +++AC
Sbjct: 424 DSTRLFNEM-NVRDAVSWTAMVSAYAQFGRAVETIQLFDKMVQHGLKPDGVTLTGVISAC 482

Query: 430 THSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYL 489
           + +GLV++G  YF+ MT + GI+P+  H++C+I+L +++G  ++ M  +  MP+  D+  
Sbjct: 483 SRAGLVEKGQRYFKLMTSEYGIVPSIGHYSCMIDLFSRSGRLEEAMRFINGMPFPPDAIG 542

Query: 490 WNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINE 549
           W  L   CR  GN+++G+   + LI+ +P   A + LLSSIY++ GK   V ++R+ + E
Sbjct: 543 WTTLLSACRNKGNLEIGKWAAESLIELDPHHPAGYTLLSSIYASKGKWDSVAQLRRGMRE 602

Query: 550 RQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQL 590
           +  KKE   SWI+ + K+H+FS  D   P  D +Y+ LE+L
Sbjct: 603 KNVKKEPGQSWIKWKGKLHSFSADDESSPYLDQIYAKLEEL 643



 Score =  267 bits (682), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 162/476 (34%), Positives = 253/476 (53%), Gaps = 26/476 (5%)

Query: 86  PTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNM 145
           P TFL N+++  Y    S   AR+VFD+IP  NLFS+NN+L  Y+  G++    + F+ +
Sbjct: 39  PETFLYNNIVHAYALMKSSTYARRVFDRIPQPNLFSWNNLLLAYSKAGLISEMESTFEKL 98

Query: 146 AERDVVSWNTMIIGYAKSGAVEEGLKFYK-VLRRFSISCNEFSFAGILTICVKLEELKLT 204
            +RD V+WN +I GY+ SG V   +K Y  ++R FS +    +   +L +      + L 
Sbjct: 99  PDRDGVTWNVLIEGYSLSGLVGAAVKAYNTMMRDFSANLTRVTLMTMLKLSSSNGHVSLG 158

Query: 205 RQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKL 264
           +Q+HGQV+  GF S +++ S ++  YA  G +SDA+++F   D R+ + + +++ G    
Sbjct: 159 KQIHGQVIKLGFESYLLVGSPLLYMYANVGCISDAKKVFYGLDDRNTVMYNSLMGGLLAC 218

Query: 265 GDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCL 324
           G +E A +LF  M EK+ VSW  +I G  +NGL ++A+E F  M +  ++ +Q+ F S L
Sbjct: 219 GMIEDALQLFRGM-EKDSVSWAAMIKGLAQNGLAKEAIECFREMKVQGLKMDQYPFGSVL 277

Query: 325 CACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENS 384
            AC  + ++  GKQ+H  +IRTNF+ +  V S+LIDMY KC CL+  + VFD    K N 
Sbjct: 278 PACGGLGAINEGKQIHACIIRTNFQDHIYVGSALIDMYCKCKCLHYAKTVFDRMKQK-NV 336

Query: 385 MLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFES 444
           + W  M+    Q G  E+A+++F DM RS + PD  TL   ++AC +   ++EG + F  
Sbjct: 337 VSWTAMVVGYGQTGRAEEAVKIFLDMQRSGIDPDHYTLGQAISACANVSSLEEG-SQFHG 395

Query: 445 MTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNID 504
                G+I        L+ L  + G  D       +M    D+  W A+     +     
Sbjct: 396 KAITSGLIHYVTVSNSLVTLYGKCGDIDDSTRLFNEMNVR-DAVSWTAM-----VSAYAQ 449

Query: 505 MGRKV-VDQLIDQNPQSSATHGL------LSSIYSALGKGRLVEKVRQLINERQFK 553
            GR V   QL D+  Q    HGL      L+ + SA  +  LVEK      +R FK
Sbjct: 450 FGRAVETIQLFDKMVQ----HGLKPDGVTLTGVISACSRAGLVEK-----GQRYFK 496



 Score =  119 bits (298), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 67/245 (27%), Positives = 128/245 (52%), Gaps = 7/245 (2%)

Query: 202 KLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGY 261
           +  + +HG ++         + ++IV AYA     + ARR+FD     ++ +W  ++  Y
Sbjct: 23  RYVKMIHGNIIRALPYPETFLYNNIVHAYALMKSSTYARRVFDRIPQPNLFSWNNLLLAY 82

Query: 262 AKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMI-LRIRPNQHTF 320
           +K G +      F ++P+++ V+W  LI GY+ +GL   A++ +  MM        + T 
Sbjct: 83  SKAGLISEMESTFEKLPDRDGVTWNVLIEGYSLSGLVGAAVKAYNTMMRDFSANLTRVTL 142

Query: 321 SSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDN 380
            + L   +S   +  GKQ+HG +I+  F S  +V S L+ MY+  GC++D ++VF   D+
Sbjct: 143 MTMLKLSSSNGHVSLGKQIHGQVIKLGFESYLLVGSPLLYMYANVGCISDAKKVFYGLDD 202

Query: 381 KENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLT 440
           + N++++N+++  L   G  E A++LF  M     + D ++ A ++     +GL +E + 
Sbjct: 203 R-NTVMYNSLMGGLLACGMIEDALQLFRGM-----EKDSVSWAAMIKGLAQNGLAKEAIE 256

Query: 441 YFESM 445
            F  M
Sbjct: 257 CFREM 261


>gi|359496846|ref|XP_002272372.2| PREDICTED: uncharacterized protein LOC100258406 [Vitis vinifera]
          Length = 1286

 Score =  314 bits (804), Expect = 9e-83,   Method: Compositional matrix adjust.
 Identities = 175/562 (31%), Positives = 290/562 (51%), Gaps = 66/562 (11%)

Query: 36  AISSLDLLAQRGIRLPAETL-AFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHL 94
            + +LDL+ QRG  +P   L + +L++C     ++ G+ VH HL        + FL NHL
Sbjct: 71  GLYALDLI-QRGSLVPDYNLYSKLLKECTRLGKVEQGRIVHAHL------VDSHFLDNHL 123

Query: 95  ISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWN 154
           +                           N +++ YA  G +  AR +FD M  +D+V+W 
Sbjct: 124 VLQ-------------------------NIIVNMYAKCGCLDDARRMFDEMPTKDMVTWT 158

Query: 155 TMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVT 214
            +I G++++    + L  +  + R     N F+ + +L        L    Q+H   L  
Sbjct: 159 ALIAGFSQNNRPRDALLLFPQMLRLGFQPNHFTLSSLLKASGSEHGLDPGTQLHAFCLKY 218

Query: 215 GFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLF 274
           G+ S+V + S++VD YA+CG                                M++A   F
Sbjct: 219 GYQSSVYVGSALVDMYARCGH-------------------------------MDAAQLAF 247

Query: 275 NEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLK 334
           + MP K+ VSW  LI+G+ R G G+ AL L  +M     +P   T+SS L ACASI +L+
Sbjct: 248 DGMPTKSEVSWNALISGHARKGEGEHALHLLWKMQRKNFQPTHFTYSSVLSACASIGALE 307

Query: 335 HGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISAL 394
            GK VH  +I++  +    + ++L+DMY+K G ++D ++VFD    K + + WNTM++  
Sbjct: 308 QGKWVHAHMIKSGLKLIAFIGNTLLDMYAKAGSIDDAKRVFDRL-VKPDVVSWNTMLTGC 366

Query: 395 TQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPN 454
            QHG  ++ +  F  M+R  ++P++I+   +L AC+HSGL+ EGL YFE M     + P+
Sbjct: 367 AQHGLGKETLDRFEQMLRIGIEPNEISFLCVLTACSHSGLLDEGLYYFELMKK-YKVEPD 425

Query: 455 QEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLI 514
             H+   ++LL + G  D+    + +MP E  + +W AL G CR+H N+++G    ++  
Sbjct: 426 VPHYVTFVDLLGRVGLLDRAERFIREMPIEPTAAVWGALLGACRMHKNMELGVYAAERAF 485

Query: 515 DQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSD 574
           + +P  S    LLS+IY++ G+ R V KVR+++ E   KK+ A SW+EIEN VH F  +D
Sbjct: 486 ELDPHDSGPRMLLSNIYASAGRWRDVAKVRKMMKESGVKKQPACSWVEIENAVHLFVAND 545

Query: 575 SLHPMRDVLYSVLEQLAGQMGE 596
             HP    +    E+++G++ E
Sbjct: 546 ETHPRIKEIRGKWEEISGKIKE 567



 Score = 75.9 bits (185), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 49/167 (29%), Positives = 93/167 (55%), Gaps = 9/167 (5%)

Query: 23  SFLSLIS----KGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHL 78
           S+ +LIS    KG+   A+  L  + ++  +    T + +L  CA   +L+ GK VH H+
Sbjct: 257 SWNALISGHARKGEGEHALHLLWKMQRKNFQPTHFTYSSVLSACASIGALEQGKWVHAHM 316

Query: 79  KLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHA 138
             +  K    F+ N L+ MY K GS  DA++VFD++   ++ S+N ML+G A  G+ K  
Sbjct: 317 IKSGLKL-IAFIGNTLLDMYAKAGSIDDAKRVFDRLVKPDVVSWNTMLTGCAQHGLGKET 375

Query: 139 RNLFDNM----AERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSI 181
            + F+ M     E + +S+  ++   + SG ++EGL ++++++++ +
Sbjct: 376 LDRFEQMLRIGIEPNEISFLCVLTACSHSGLLDEGLYYFELMKKYKV 422


>gi|414587348|tpg|DAA37919.1| TPA: hypothetical protein ZEAMMB73_411767 [Zea mays]
          Length = 920

 Score =  314 bits (804), Expect = 9e-83,   Method: Compositional matrix adjust.
 Identities = 176/569 (30%), Positives = 298/569 (52%), Gaps = 67/569 (11%)

Query: 25  LSLISKGQLSEAISSLDLLAQ---RGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLT 81
           L L++ GQ+S+   S ++  Q    GI     T   IL+ C  +  ++LG+++H  L + 
Sbjct: 316 LMLVAYGQISDLAKSFEIFGQMQATGIHPNKFTYPCILRTCTCTGQIELGEQIH-SLSIK 374

Query: 82  QRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNL 141
                  ++S  LI MY K        +  DK                        AR +
Sbjct: 375 NGFESDMYVSGVLIDMYSK-------YRCLDK------------------------ARKI 403

Query: 142 FDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEEL 201
            + + +RDVVSW +MI GY +    EE L  +K ++   +  +    A   + C  ++ +
Sbjct: 404 LEMLEKRDVVSWTSMIAGYVQHDFCEEALATFKEMQDCGVWPDNIGLASAASACAGIKAM 463

Query: 202 KLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGY 261
           +   Q+H +V V+G+                               A D+  W T+V+ Y
Sbjct: 464 RQGLQIHARVYVSGY-------------------------------AADISIWNTLVNLY 492

Query: 262 AKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFS 321
           A+ G  E A  LF E+  K+ ++W  LI+G+ ++ L ++AL +F +M     + N  TF 
Sbjct: 493 ARCGRSEEAFSLFREIDHKDEITWNGLISGFGQSRLYEQALMVFMKMSQAGAKYNVFTFI 552

Query: 322 SCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNK 381
           S + A A++  +K GKQVHG  ++T   S T V ++LI +Y KCG + D + +F     +
Sbjct: 553 SAISALANLADIKQGKQVHGRAVKTGHTSETEVANALISLYGKCGSIEDAKMIFSEMSLR 612

Query: 382 ENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTY 441
            N + WNT+I++ +QHG   +A+ LF  M +  +KP+ +T   +L AC+H GLV+EGL+Y
Sbjct: 613 -NEVSWNTIITSCSQHGRGLEALDLFDQMKQEGLKPNDVTFIGVLAACSHVGLVEEGLSY 671

Query: 442 FESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHG 501
           F+SM++  G+ P  +H+AC++++L +AG  D+    +++MP   ++ +W  L   C++H 
Sbjct: 672 FKSMSNVYGLNPIPDHYACVVDILGRAGQLDRARRFVDEMPITANAMIWRTLLSACKVHK 731

Query: 502 NIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWI 561
           NI++G      L++  P  SA++ LLS+ Y+  GK    ++VR+++ +R  +KE   SWI
Sbjct: 732 NIEIGELAAKHLLELEPHDSASYVLLSNAYAVTGKWANRDQVRKMMKDRGIRKEPGRSWI 791

Query: 562 EIENKVHAFSVSDSLHPMRDVLYSVLEQL 590
           E++N VHAF V D LHP+ D +Y  L +L
Sbjct: 792 EVKNAVHAFFVGDRLHPLSDQIYKFLSEL 820



 Score =  158 bits (399), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 119/491 (24%), Positives = 215/491 (43%), Gaps = 48/491 (9%)

Query: 8   RGINRKNLPNNCLIQSFLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKS 67
           RG+    L  N LI  +      G + +A      L+ R        L+   Q+    ++
Sbjct: 72  RGLGADRLIGNLLIDLY---AKNGLVWQARQVFKELSSRDHVSWVAMLSGYAQRGLGKEA 128

Query: 68  LKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLS 127
            +L  ++H    +      ++ LS       F  G  + A +V+ +      F  N +++
Sbjct: 129 FRLYSQMHWTAVIPTPYVLSSVLSACTKGKLFAQGRMIHA-QVYKQAFCSETFVGNALIA 187

Query: 128 GYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFS 187
            Y   G  K A  +F +M   D V++NT+I G+A+ G  E  L+ +  ++   +  +  +
Sbjct: 188 LYLGFGSFKLAERVFCDMLFCDRVTFNTLISGHAQCGHGECALQIFDEMQLSGLRPDCVT 247

Query: 188 FAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETD 247
            A +L  C  + +L+  +Q+H  +L  G   + +   S++D Y KCG++  A  +F+  D
Sbjct: 248 VASLLAACASVGDLQKGKQLHSYLLKAGMSFDYITEGSLLDLYVKCGDIETAHDIFNLGD 307

Query: 248 ARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTR 307
             +V+ W  M+  Y ++ D+                                K+ E+F +
Sbjct: 308 RTNVVLWNLMLVAYGQISDL-------------------------------AKSFEIFGQ 336

Query: 308 MMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGC 367
           M    I PN+ T+   L  C     ++ G+Q+H   I+  F S+  V   LIDMYSK  C
Sbjct: 337 MQATGIHPNKFTYPCILRTCTCTGQIELGEQIHSLSIKNGFESDMYVSGVLIDMYSKYRC 396

Query: 368 LNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILN 427
           L+  R++ ++ + K + + W +MI+   QH + E+A+  F +M    V PD I LA   +
Sbjct: 397 LDKARKILEMLE-KRDVVSWTSMIAGYVQHDFCEEALATFKEMQDCGVWPDNIGLASAAS 455

Query: 428 ACTHSGLVQEGL-----TYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMP 482
           AC     +++GL      Y      D+ I         L+ L A+ G S++  +   ++ 
Sbjct: 456 ACAGIKAMRQGLQIHARVYVSGYAADISIWNT------LVNLYARCGRSEEAFSLFREID 509

Query: 483 YEHDSYLWNAL 493
           ++ D   WN L
Sbjct: 510 HK-DEITWNGL 519



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 95/394 (24%), Positives = 177/394 (44%), Gaps = 75/394 (19%)

Query: 203 LTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYA 262
           L  ++H   +V G  ++ +I + ++D YAK G +  AR++F E  +RD ++W  M+SGYA
Sbjct: 61  LVLEIHATSVVRGLGADRLIGNLLIDLYAKNGLVWQARQVFKELSSRDHVSWVAMLSGYA 120

Query: 263 KLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSS 322
           +                                GLG++A  L+++M    + P  +  SS
Sbjct: 121 Q-------------------------------RGLGKEAFRLYSQMHWTAVIPTPYVLSS 149

Query: 323 CLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVF-DLTDNK 381
            L AC        G+ +H  + +  F S T V ++LI +Y   G      +VF D+    
Sbjct: 150 VLSACTKGKLFAQGRMIHAQVYKQAFCSETFVGNALIALYLGFGSFKLAERVFCDMLFC- 208

Query: 382 ENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACT----------- 430
            + + +NT+IS   Q G+ E A+++F +M  S ++PD +T+A +L AC            
Sbjct: 209 -DRVTFNTLISGHAQCGHGECALQIFDEMQLSGLRPDCVTVASLLAACASVGDLQKGKQL 267

Query: 431 HSGLVQEGLTYFESMT-----------------HDLGIIPNQEHHACL-IELLAQAGCSD 472
           HS L++ G++ F+ +T                 HD+  + ++ +     + L+A    SD
Sbjct: 268 HSYLLKAGMS-FDYITEGSLLDLYVKCGDIETAHDIFNLGDRTNVVLWNLMLVAYGQISD 326

Query: 473 -----QLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSA-THGL 526
                ++  Q++      + + +  +   C   G I++G ++    I    +S     G+
Sbjct: 327 LAKSFEIFGQMQATGIHPNKFTYPCILRTCTCTGQIELGEQIHSLSIKNGFESDMYVSGV 386

Query: 527 LSSIYSALGKGRLVEKVRQLINERQFKKEQAISW 560
           L  +YS   K R ++K R+++     +K   +SW
Sbjct: 387 LIDMYS---KYRCLDKARKILE--MLEKRDVVSW 415


>gi|15226200|ref|NP_180329.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75216862|sp|Q9ZUW3.1|PP172_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g27610
 gi|3860271|gb|AAC73039.1| putative selenium-binding protein [Arabidopsis thaliana]
 gi|330252926|gb|AEC08020.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 868

 Score =  314 bits (804), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 176/549 (32%), Positives = 287/549 (52%), Gaps = 74/549 (13%)

Query: 114 IPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFY 173
           IPV N     ++++ Y   G ++ AR LFD    + VV+WN+MI GYA +G   E L  +
Sbjct: 229 IPVSN-----SLINLYLKCGNVRKARILFDKTEVKSVVTWNSMISGYAANGLDLEALGMF 283

Query: 174 KVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFL---------------- 217
             +R   +  +E SFA ++ +C  L+EL+ T Q+H  V+  GFL                
Sbjct: 284 YSMRLNYVRLSESSFASVIKLCANLKELRFTEQLHCSVVKYGFLFDQNIRTALMVAYSKC 343

Query: 218 ----------------SNVVISSSIVDAYAKCGELSDARRLFDETDARDV----LTW--- 254
                            NVV  ++++  + +     +A  LF E   + V     T+   
Sbjct: 344 TAMLDALRLFKEIGCVGNVVSWTAMISGFLQNDGKEEAVDLFSEMKRKGVRPNEFTYSVI 403

Query: 255 ----------------------------TTMVSGYAKLGDMESASKLFNEMPEKNPVSWT 286
                                       T ++  Y KLG +E A+K+F+ + +K+ V+W+
Sbjct: 404 LTALPVISPSEVHAQVVKTNYERSSTVGTALLDAYVKLGKVEEAAKVFSGIDDKDIVAWS 463

Query: 287 TLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASI-VSLKHGKQVHGFLIR 345
            ++AGY + G  + A+++F  +    I+PN+ TFSS L  CA+   S+  GKQ HGF I+
Sbjct: 464 AMLAGYAQTGETEAAIKMFGELTKGGIKPNEFTFSSILNVCAATNASMGQGKQFHGFAIK 523

Query: 346 TNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIR 405
           +   S+  V S+L+ MY+K G +    +VF     K+  + WN+MIS   QHG   +A+ 
Sbjct: 524 SRLDSSLCVSSALLTMYAKKGNIESAEEVFKRQREKD-LVSWNSMISGYAQHGQAMKALD 582

Query: 406 LFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELL 465
           +F +M +  VK D +T   +  ACTH+GLV+EG  YF+ M  D  I P +EH++C+++L 
Sbjct: 583 VFKEMKKRKVKMDGVTFIGVFAACTHAGLVEEGEKYFDIMVRDCKIAPTKEHNSCMVDLY 642

Query: 466 AQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHG 525
           ++AG  ++ M  +E MP    S +W  +   CR+H   ++GR   +++I   P+ SA + 
Sbjct: 643 SRAGQLEKAMKVIENMPNPAGSTIWRTILAACRVHKKTELGRLAAEKIIAMKPEDSAAYV 702

Query: 526 LLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYS 585
           LLS++Y+  G  +   KVR+L+NER  KKE   SWIE++NK ++F   D  HP++D +Y 
Sbjct: 703 LLSNMYAESGDWQERAKVRKLMNERNVKKEPGYSWIEVKNKTYSFLAGDRSHPLKDQIYM 762

Query: 586 VLEQLAGQM 594
            LE L+ ++
Sbjct: 763 KLEDLSTRL 771



 Score =  166 bits (420), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 126/480 (26%), Positives = 221/480 (46%), Gaps = 84/480 (17%)

Query: 71  GKRVHLHLKLTQRKTPTTF-LSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGY 129
           G+ + +H  + +     T  +SN LI++Y KCG+   AR +FDK  VK++ ++N+M+SGY
Sbjct: 211 GRGLQVHTVVVKNGLDKTIPVSNSLINLYLKCGNVRKARILFDKTEVKSVVTWNSMISGY 270

Query: 130 ANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFA 189
           A  G+   A  +F +M                               R   +  +E SFA
Sbjct: 271 AANGLDLEALGMFYSM-------------------------------RLNYVRLSESSFA 299

Query: 190 GILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETD-A 248
            ++ +C  L+EL+ T Q+H  V+  GFL +  I ++++ AY+KC  + DA RLF E    
Sbjct: 300 SVIKLCANLKELRFTEQLHCSVVKYGFLFDQNIRTALMVAYSKCTAMLDALRLFKEIGCV 359

Query: 249 RDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRM 308
            +V++WT M+SG+ +    E A  LF+EM  K                            
Sbjct: 360 GNVVSWTAMISGFLQNDGKEEAVDLFSEMKRKG--------------------------- 392

Query: 309 MILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCL 368
               +RPN+ T+S  L A   I       +VH  +++TN+  ++ V ++L+D Y K G +
Sbjct: 393 ----VRPNEFTYSVILTALPVISP----SEVHAQVVKTNYERSSTVGTALLDAYVKLGKV 444

Query: 369 NDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNA 428
            +  +VF   D+K+  + W+ M++   Q G  E AI++F ++ +  +KP++ T + ILN 
Sbjct: 445 EEAAKVFSGIDDKD-IVAWSAMLAGYAQTGETEAAIKMFGELTKGGIKPNEFTFSSILNV 503

Query: 429 CTHSGL-VQEGLTYFESMTHDLGIIPNQEHHAC----LIELLAQAGCSDQLMNQLEKMPY 483
           C  +   + +G  +     H   I    +   C    L+ + A+ G + +   ++ K   
Sbjct: 504 CAATNASMGQGKQF-----HGFAIKSRLDSSLCVSSALLTMYAKKG-NIESAEEVFKRQR 557

Query: 484 EHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGL-LSSIYSALGKGRLVEK 542
           E D   WN++      HG      K +D   +   +     G+    +++A     LVE+
Sbjct: 558 EKDLVSWNSMISGYAQHGQ---AMKALDVFKEMKKRKVKMDGVTFIGVFAACTHAGLVEE 614



 Score =  155 bits (393), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 90/305 (29%), Positives = 154/305 (50%), Gaps = 31/305 (10%)

Query: 124 NMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISC 183
           +++  Y      K  R +FD M ER+VV+W T+I GYA++   +E L  +  ++      
Sbjct: 133 SLVDTYMKGSNFKDGRKVFDEMKERNVVTWTTLISGYARNSMNDEVLTLFMRMQNEGTQP 192

Query: 184 NEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLF 243
           N F+FA  L +  +        QVH  V+  G    + +S+S+++ Y KCG +  AR LF
Sbjct: 193 NSFTFAAALGVLAEEGVGGRGLQVHTVVVKNGLDKTIPVSNSLINLYLKCGNVRKARILF 252

Query: 244 DETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALE 303
           D+T+ + V+TW +M+SGYA                                NGL  +AL 
Sbjct: 253 DKTEVKSVVTWNSMISGYAA-------------------------------NGLDLEALG 281

Query: 304 LFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYS 363
           +F  M +  +R ++ +F+S +  CA++  L+  +Q+H  +++  F  +  + ++L+  YS
Sbjct: 282 MFYSMRLNYVRLSESSFASVIKLCANLKELRFTEQLHCSVVKYGFLFDQNIRTALMVAYS 341

Query: 364 KCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLA 423
           KC  + D  ++F       N + W  MIS   Q+   E+A+ LF +M R  V+P++ T +
Sbjct: 342 KCTAMLDALRLFKEIGCVGNVVSWTAMISGFLQNDGKEEAVDLFSEMKRKGVRPNEFTYS 401

Query: 424 VILNA 428
           VIL A
Sbjct: 402 VILTA 406



 Score =  148 bits (374), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 87/295 (29%), Positives = 145/295 (49%), Gaps = 32/295 (10%)

Query: 137 HARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICV 196
           +A NLFD    RD  S+ +++ G+++ G  +E  + +  + R  +  +   F+ +L +  
Sbjct: 45  NAHNLFDKSPGRDRESYISLLFGFSRDGRTQEAKRLFLNIHRLGMEMDCSIFSSVLKVSA 104

Query: 197 KLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTT 256
            L +    RQ+H Q +  GFL +V + +S+VD Y K     D R                
Sbjct: 105 TLCDELFGRQLHCQCIKFGFLDDVSVGTSLVDTYMKGSNFKDGR---------------- 148

Query: 257 MVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPN 316
                          K+F+EM E+N V+WTTLI+GY RN +  + L LF RM     +PN
Sbjct: 149 ---------------KVFDEMKERNVVTWTTLISGYARNSMNDEVLTLFMRMQNEGTQPN 193

Query: 317 QHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFD 376
             TF++ L   A       G QVH  +++        V +SLI++Y KCG +   R +FD
Sbjct: 194 SFTFAAALGVLAEEGVGGRGLQVHTVVVKNGLDKTIPVSNSLINLYLKCGNVRKARILFD 253

Query: 377 LTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTH 431
            T+ K + + WN+MIS    +G D +A+ +F+ M  + V+  + + A ++  C +
Sbjct: 254 KTEVK-SVVTWNSMISGYAANGLDLEALGMFYSMRLNYVRLSESSFASVIKLCAN 307



 Score = 88.6 bits (218), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 51/171 (29%), Positives = 87/171 (50%), Gaps = 1/171 (0%)

Query: 269 SASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACA 328
           +A  LF++ P ++  S+ +L+ G++R+G  Q+A  LF  +  L +  +   FSS L   A
Sbjct: 45  NAHNLFDKSPGRDRESYISLLFGFSRDGRTQEAKRLFLNIHRLGMEMDCSIFSSVLKVSA 104

Query: 329 SIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWN 388
           ++     G+Q+H   I+  F  +  V +SL+D Y K     DGR+VFD    + N + W 
Sbjct: 105 TLCDELFGRQLHCQCIKFGFLDDVSVGTSLVDTYMKGSNFKDGRKVFDEMKER-NVVTWT 163

Query: 389 TMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGL 439
           T+IS   ++  +++ + LF  M     +P+  T A  L      G+   GL
Sbjct: 164 TLISGYARNSMNDEVLTLFMRMQNEGTQPNSFTFAAALGVLAEEGVGGRGL 214


>gi|147833409|emb|CAN68525.1| hypothetical protein VITISV_018083 [Vitis vinifera]
          Length = 1796

 Score =  314 bits (804), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 162/505 (32%), Positives = 287/505 (56%), Gaps = 2/505 (0%)

Query: 54  TLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDK 113
            LA ++  C    +L  GK++H  + + + +  +  L + L+++Y KCG    A  V + 
Sbjct: 175 VLATVVGACTNLGALDCGKQIHARIVVDEVEFDSV-LGSSLVNLYGKCGDIDSANHVLNL 233

Query: 114 IPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFY 173
           +   + FS + ++SGYA+ G M  AR +F   +   VV WN+MI GY  +    E L+ +
Sbjct: 234 MKEPDAFSLSALISGYASCGRMNDARRIFCLKSNXCVVLWNSMISGYVANNEALEALELF 293

Query: 174 KVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKC 233
             +RR  +  +  +FA +L+ C  L  +    QVH  V   GF ++++I S++VD Y+KC
Sbjct: 294 NNMRRKGVQEDYSTFASVLSACSTLGIIDQGIQVHAHVYKVGFTNDIIIDSALVDMYSKC 353

Query: 234 GELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYT 293
               DA +LF +  A D +   +M++ Y+  G ++ A ++F+ MP K+ +SW ++I G++
Sbjct: 354 RRPDDACKLFSDLQAYDTILLNSMITVYSNCGRIDDARQIFDTMPSKSLISWNSMIVGFS 413

Query: 294 RNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTI 353
           +N    +AL+LF  M  L +R ++ + +  + ACASI SL+ G+Q+           + I
Sbjct: 414 QNACPIEALDLFCEMNKLGLRMDKFSLAGVISACASISSLELGEQIFARATIIGLEFDQI 473

Query: 354 VMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRS 413
           + +SL+D Y KCG +  GR++FD    K + + WN+M+     +G+  +A+ +F  M   
Sbjct: 474 ISTSLVDFYCKCGLVEHGRKLFDRM-MKSDEVPWNSMLMGYATNGHGIEALNVFDQMRSV 532

Query: 414 SVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQ 473
            V+P  IT   +L+AC H GLV+EG  +F +M  D  I P  EH++C+++L A+AG  + 
Sbjct: 533 GVQPTDITFVGVLSACDHCGLVEEGRKWFYAMKLDYHINPGIEHYSCMVDLYARAGLLED 592

Query: 474 LMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSA 533
            MN +E+MP + D+ +W+++   C  HGN  +G+KV  ++ID +P++S  +  LS IY+ 
Sbjct: 593 AMNLIEQMPLKADTSMWSSVLRGCVAHGNNILGKKVAKRIIDLDPENSGAYVQLSGIYAT 652

Query: 534 LGKGRLVEKVRQLINERQFKKEQAI 558
                   +VR+L+ +++  K+ + 
Sbjct: 653 FEDWGRSAQVRKLMYDKKIPKDTSF 677



 Score =  279 bits (714), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 161/582 (27%), Positives = 291/582 (50%), Gaps = 75/582 (12%)

Query: 88   TFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAE 147
            TFL N  + +Y + G+  D+ +VF+ I  KNL S+N  L  +   G ++ AR++FD M +
Sbjct: 745  TFLGNRCLDLYSQLGTGNDSLRVFEDIIDKNLISWNIFLKAFVRFGELERARDVFDEMPK 804

Query: 148  RDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQV 207
            RDVVSWNTMI GY   G  ++  +F+  +++  I  + F+++ +L+    +      +Q+
Sbjct: 805  RDVVSWNTMISGYVSFGLFDDAFRFFSEMQKAGIRPSGFTYSTLLSF---VSSACRGKQI 861

Query: 208  HGQVLVTGF-LSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMV-----SGY 261
            H  ++  G  LSNVV+ +S++  Y K G +  A  +F   +  D+++W +++     SGY
Sbjct: 862  HASMIRNGVDLSNVVVGNSLIGMYGKFGVVDYAFGVFITMEELDIISWNSLIWSCGKSGY 921

Query: 262  AKLG------------------------------DMESASKLF----------------- 274
              L                               D+E   ++F                 
Sbjct: 922  QNLALRQFVLMRSVGYSPDQFTVSTVITVCSNLQDLEKGEQIFALCIRVGFLSNSIVSSA 981

Query: 275  ------------------NEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPN 316
                               E+ + + V    +I+ Y  +G G+ AL+LF   +   +RP 
Sbjct: 982  SIDLFSKCNRLEDSVRVFEEIYQWDSVLCNAMISSYAWHGFGENALQLFVLTLRENLRPT 1041

Query: 317  QHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFD 376
            + T S  L A + ++ +  G Q+H  ++++   S+ IV SSL++MY+K G ++   + F 
Sbjct: 1042 EFTLSIVLSAVSILLPVDQGSQIHSLVVKSGLESDVIVASSLVEMYAKFGLIDSAMKTFA 1101

Query: 377  LTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQ 436
                ++  + WNTMI  L  +G   +A+ +F +++     PD+ITLA +L AC   GLV 
Sbjct: 1102 KIGARD-LISWNTMIMGLAYNGRVSKALEIFKELLIGGPPPDEITLAGVLLACNVGGLVD 1160

Query: 437  EGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGV 496
            EGL+ F SM  + G+IP  EH+AC+++++++ G   + M+ +E MP+E    +W +L   
Sbjct: 1161 EGLSIFSSMEKEYGVIPAIEHYACIVDMMSRGGKLKEAMDIVELMPHEPSGLIWGSLLCA 1220

Query: 497  CRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQ 556
            C I+G++    +V +++++  PQSS  + +L+  Y   G+   + +V + + E+  +K  
Sbjct: 1221 CEIYGDLRFTERVAERVMELEPQSSLPYLVLAQAYEMRGRWESLVRVXRAMKEKGVRKVI 1280

Query: 557  AISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQMGEDA 598
              SWI I+N V  F  +  LH     +Y +L  L  ++ +D 
Sbjct: 1281 GCSWIGIKNHVFVFKENQLLHIGGKDIYFILRLLIQEIEDDG 1322



 Score =  206 bits (525), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 136/480 (28%), Positives = 238/480 (49%), Gaps = 45/480 (9%)

Query: 89  FLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAER 148
           F  N +I  Y K GS   + ++FD +P K+ FS+N ++SG+A  G ++ AR LF+ M  +
Sbjct: 74  FSWNTMIEGYLKSGSKGKSLELFDSMPHKDAFSWNVVISGFAKEGNLEVARRLFNEMPWK 133

Query: 149 DVVSWNTMIIGYAKSGAVEEGLKFYK-----VLRRFSISCNE-FSFAGILTICVKLEELK 202
           + ++WN+MI GYA +G  +E +  +K      L RF   C + F  A ++  C  L  L 
Sbjct: 134 NGIAWNSMIHGYACNGRPKEAVGLFKDLSLNPLERF---CGDTFVLATVVGACTNLGALD 190

Query: 203 LTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYA 262
             +Q+H +++V     + V+ SS+V+ Y KCG++  A  + +     D  + + ++SGYA
Sbjct: 191 CGKQIHARIVVDEVEFDSVLGSSLVNLYGKCGDIDSANHVLNLMKEPDAFSLSALISGYA 250

Query: 263 KLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSS 322
             G M  A ++F        V W ++I+GY  N    +ALELF  M    ++ +  TF+S
Sbjct: 251 SCGRMNDARRIFCLKSNXCVVLWNSMISGYVANNEALEALELFNNMRRKGVQEDYSTFAS 310

Query: 323 CLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSK------------------ 364
            L AC+++  +  G QVH  + +  F ++ I+ S+L+DMYSK                  
Sbjct: 311 VLSACSTLGIIDQGIQVHAHVYKVGFTNDIIIDSALVDMYSKCRRPDDACKLFSDLQAYD 370

Query: 365 -------------CGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMV 411
                        CG ++D RQ+FD   +K + + WN+MI   +Q+    +A+ LF +M 
Sbjct: 371 TILLNSMITVYSNCGRIDDARQIFDTMPSK-SLISWNSMIVGFSQNACPIEALDLFCEMN 429

Query: 412 RSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCS 471
           +  ++ DK +LA +++AC     ++ G   F   T  +G+  +Q     L++   + G  
Sbjct: 430 KLGLRMDKFSLAGVISACASISSLELGEQIFARATI-IGLEFDQIISTSLVDFYCKCGLV 488

Query: 472 DQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQL--IDQNPQSSATHGLLSS 529
           +      ++M  + D   WN++      +G+      V DQ+  +   P      G+LS+
Sbjct: 489 EHGRKLFDRM-MKSDEVPWNSMLMGYATNGHGIEALNVFDQMRSVGVQPTDITFVGVLSA 547



 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 94/370 (25%), Positives = 182/370 (49%), Gaps = 38/370 (10%)

Query: 34  SEAISSLDL---LAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFL 90
           +EA+ +L+L   + ++G++    T A +L  C+    +  G +VH H+      T    +
Sbjct: 284 NEALEALELFNNMRRKGVQEDYSTFASVLSACSTLGIIDQGIQVHAHVYKVGF-TNDIII 342

Query: 91  SNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDV 150
            + L+ MY KC    DA K+F  +   +    N+M++ Y+N G +  AR +FD M  + +
Sbjct: 343 DSALVDMYSKCRRPDDACKLFSDLQAYDTILLNSMITVYSNCGRIDDARQIFDTMPSKSL 402

Query: 151 VSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQ 210
           +SWN+MI+G++++    E L  +  + +  +  ++FS AG+++ C  +  L+L  Q+  +
Sbjct: 403 ISWNSMIVGFSQNACPIEALDLFCEMNKLGLRMDKFSLAGVISACASISSLELGEQIFAR 462

Query: 211 VLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESA 270
             + G   + +IS+S+VD Y KCG +   R+LFD     D + W +M+ GYA        
Sbjct: 463 ATIIGLEFDQIISTSLVDFYCKCGLVEHGRKLFDRMMKSDEVPWNSMLMGYAT------- 515

Query: 271 SKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASI 330
                                   NG G +AL +F +M  + ++P   TF   L AC   
Sbjct: 516 ------------------------NGHGIEALNVFDQMRSVGVQPTDITFVGVLSACDHC 551

Query: 331 VSLKHGKQVHGFLIRTNFRSNTIV--MSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWN 388
             ++ G++   + ++ ++  N  +   S ++D+Y++ G L D   + +    K ++ +W+
Sbjct: 552 GLVEEGRKWF-YAMKLDYHINPGIEHYSCMVDLYARAGLLEDAMNLIEQMPLKADTSMWS 610

Query: 389 TMISALTQHG 398
           +++     HG
Sbjct: 611 SVLRGCVAHG 620



 Score =  139 bits (350), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 82/289 (28%), Positives = 155/289 (53%), Gaps = 7/289 (2%)

Query: 214  TGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKL 273
             GF ++  + +  +D Y++ G  +D+ R+F++   +++++W   +  + + G++E A  +
Sbjct: 739  VGFNTHTFLGNRCLDLYSQLGTGNDSLRVFEDIIDKNLISWNIFLKAFVRFGELERARDV 798

Query: 274  FNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSL 333
            F+EMP+++ VSW T+I+GY   GL   A   F+ M    IRP+  T+S+ L   +S    
Sbjct: 799  FDEMPKRDVVSWNTMISGYVSFGLFDDAFRFFSEMQKAGIRPSGFTYSTLLSFVSSAC-- 856

Query: 334  KHGKQVHGFLIRTNFR-SNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMIS 392
              GKQ+H  +IR     SN +V +SLI MY K G ++    VF +T  + + + WN++I 
Sbjct: 857  -RGKQIHASMIRNGVDLSNVVVGNSLIGMYGKFGVVDYAFGVF-ITMEELDIISWNSLIW 914

Query: 393  ALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGII 452
            +  + GY   A+R F  M      PD+ T++ ++  C++   +++G   F ++   +G +
Sbjct: 915  SCGKSGYQNLALRQFVLMRSVGYSPDQFTVSTVITVCSNLQDLEKGEQIF-ALCIRVGFL 973

Query: 453  PNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHG 501
             N    +  I+L ++    +  +   E++ Y+ DS L NA+      HG
Sbjct: 974  SNSIVSSASIDLFSKCNRLEDSVRVFEEI-YQWDSVLCNAMISSYAWHG 1021



 Score =  139 bits (349), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 101/396 (25%), Positives = 187/396 (47%), Gaps = 75/396 (18%)

Query: 187 SFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVV-ISSSIVDAYAKCGELSDARRLFDE 245
           S A  L  C     +   R +H   L +G L +V+ I + ++  Y++C  + +A++LF+E
Sbjct: 8   SLARQLGSCNNYGSIYRGRXLHILFLKSGVLHSVLSIGNRLLQMYSRCNSMREAQQLFEE 67

Query: 246 TDARDVLTWTTMV-------------------------------SGYAKLGDMESASKLF 274
              R+  +W TM+                               SG+AK G++E A +LF
Sbjct: 68  MPKRNCFSWNTMIEGYLKSGSKGKSLELFDSMPHKDAFSWNVVISGFAKEGNLEVARRLF 127

Query: 275 NEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMM---ILRIRPNQHTFSSCLCACASIV 331
           NEMP KN ++W ++I GY  NG  ++A+ LF  +    + R   +    ++ + AC ++ 
Sbjct: 128 NEMPWKNGIAWNSMIHGYACNGRPKEAVGLFKDLSLNPLERFCGDTFVLATVVGACTNLG 187

Query: 332 SLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCG------------------------- 366
           +L  GKQ+H  ++      ++++ SSL+++Y KCG                         
Sbjct: 188 ALDCGKQIHARIVVDEVEFDSVLGSSLVNLYGKCGDIDSANHVLNLMKEPDAFSLSALIS 247

Query: 367 ----C--LNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKI 420
               C  +ND R++F L  N    +LWN+MIS    +    +A+ LF++M R  V+ D  
Sbjct: 248 GYASCGRMNDARRIFCLKSNX-CVVLWNSMISGYVANNEALEALELFNNMRRKGVQEDYS 306

Query: 421 TLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSD---QLMNQ 477
           T A +L+AC+  G++ +G+    +  + +G   +    + L+++ ++    D   +L + 
Sbjct: 307 TFASVLSACSTLGIIDQGIQ-VHAHVYKVGFTNDIIIDSALVDMYSKCRRPDDACKLFSD 365

Query: 478 LEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQL 513
           L+     +D+ L N++  V    G ID  R++ D +
Sbjct: 366 LQA----YDTILLNSMITVYSNCGRIDDARQIFDTM 397



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 52/235 (22%), Positives = 105/235 (44%), Gaps = 13/235 (5%)

Query: 318 HTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTI-VMSSLIDMYSKCGCLNDGRQVFD 376
           H+ +  L +C +  S+  G+ +H   +++    + + + + L+ MYS+C  + + +Q+F+
Sbjct: 7   HSLARQLGSCNNYGSIYRGRXLHILFLKSGVLHSVLSIGNRLLQMYSRCNSMREAQQLFE 66

Query: 377 LTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQ 436
               K N   WNTMI    + G   +++ LF  M       D  +  V+++     G ++
Sbjct: 67  EMP-KRNCFSWNTMIEGYLKSGSKGKSLELFDSMPHK----DAFSWNVVISGFAKEGNLE 121

Query: 437 EGLTYFESMTHDLGIIPNQEHH--ACLIELLAQAGCSDQL-MNQLEKMPYEHDSYLWNAL 493
                F  M    GI  N   H  AC        G    L +N LE+  +  D+++   +
Sbjct: 122 VARRLFNEMPWKNGIAWNSMIHGYACNGRPKEAVGLFKDLSLNPLER--FCGDTFVLATV 179

Query: 494 HGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLIN 548
            G C   G +D G+++  +++    +  +  G  SS+ +  GK   ++    ++N
Sbjct: 180 VGACTNLGALDCGKQIHARIVVDEVEFDSVLG--SSLVNLYGKCGDIDSANHVLN 232


>gi|413944077|gb|AFW76726.1| hypothetical protein ZEAMMB73_427029 [Zea mays]
          Length = 646

 Score =  314 bits (804), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 162/476 (34%), Positives = 272/476 (57%), Gaps = 3/476 (0%)

Query: 117 KNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLK-FYKV 175
           +++ + N ++  Y +  ++  AR LFD MA+RDVVSW T+I GYA+ G  +E  + F ++
Sbjct: 164 QSVLAGNALVHMYTSSMLLPDARKLFDEMADRDVVSWTTLIDGYARGGLPDEAWRVFCRM 223

Query: 176 LRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGE 235
           +   S+  NE +     +   ++  L L R VH  ++ +G   +V + +++VD + KCG 
Sbjct: 224 VVAESVWPNEVTLVAAASAAGQMGLLGLGRTVHQCIVESGGRMSVNLENALVDMFGKCGC 283

Query: 236 LSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRN 295
           ++ A+ +FD    +DV +WT+MVS YAK GD+E+A+KLF E+P +N VSW+ ++A Y+  
Sbjct: 284 VAAAKEVFDGMPIKDVYSWTSMVSAYAKCGDLENAAKLFKEIPNRNVVSWSCMVAAYSHA 343

Query: 296 GLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHG-FLIRTNFRSNTIV 354
            +  +A+ +F  M+   + P   T  S L ACA + SL  G  ++  +++         +
Sbjct: 344 NMPDEAIRIFNDMIAAGVEPIDATLVSVLSACAQLCSLDVGTWLYDTYIVSHKVELTPNL 403

Query: 355 MSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSS 414
            ++ IDM++KCG +    ++F   ++K N + WNTMI A   HG  E+A+ LF +   + 
Sbjct: 404 SNAFIDMFAKCGDVGAASRLFSNMEDK-NVVSWNTMIMAHGLHGQPEEALHLFQEFKGNG 462

Query: 415 VKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQL 474
           + PD+ T   +L+AC+H GLV EG  +F+ M    GI P  EH+AC+I+LL + G   + 
Sbjct: 463 ILPDEATYIGVLSACSHGGLVSEGRCHFKEMKIVYGIEPRAEHYACMIDLLGKVGLLQEA 522

Query: 475 MNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSAL 534
                 MP   D   W AL   CR+HGN+++G+   D+L   +P  S  + L+S IY++ 
Sbjct: 523 FEVARSMPVGADEAGWGALLNACRMHGNVEIGKCAADKLAGLDPSDSGIYVLMSQIYASK 582

Query: 535 GKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQL 590
            K   V+ +R ++ +R+ KK    S IE++ K H F V+D  H   + +Y+ L  +
Sbjct: 583 SKWGQVKMLRTVMRDRRVKKNPGCSSIEVDGKCHEFLVADVSHVHSEDIYAALGNI 638



 Score =  125 bits (315), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 85/344 (24%), Positives = 158/344 (45%), Gaps = 56/344 (16%)

Query: 68  LKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLS 127
           L LG+ VH  +  +  +     L N L+ M+ KCG    A++VFD +P+K+++S+ +M+S
Sbjct: 249 LGLGRTVHQCIVESGGRMSVN-LENALVDMFGKCGCVAAAKEVFDGMPIKDVYSWTSMVS 307

Query: 128 GYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFS 187
            YA  G +++A  LF  +  R+VVSW+ M+  Y+ +   +E ++ +  +    +   + +
Sbjct: 308 AYAKCGDLENAAKLFKEIPNRNVVSWSCMVAAYSHANMPDEAIRIFNDMIAAGVEPIDAT 367

Query: 188 FAGILTICVKLEELKLTRQVHGQVLVTGFLS-NVVISSSIVDAYAKCGELSDARRLFDET 246
              +L+ C +L  L +   ++   +V+  +     +S++ +D +AKCG++  A RLF   
Sbjct: 368 LVSVLSACAQLCSLDVGTWLYDTYIVSHKVELTPNLSNAFIDMFAKCGDVGAASRLFSNM 427

Query: 247 DARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFT 306
           + ++V++W TM+  +   G  E A  LF E               +  NG          
Sbjct: 428 EDKNVVSWNTMIMAHGLHGQPEEALHLFQE---------------FKGNG---------- 462

Query: 307 RMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLI---RTNFRSNTIV--------- 354
                 I P++ T+   L AC+           HG L+   R +F+   IV         
Sbjct: 463 ------ILPDEATYIGVLSACS-----------HGGLVSEGRCHFKEMKIVYGIEPRAEH 505

Query: 355 MSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHG 398
            + +ID+  K G L +  +V        +   W  +++A   HG
Sbjct: 506 YACMIDLLGKVGLLQEAFEVARSMPVGADEAGWGALLNACRMHG 549



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 43/172 (25%), Positives = 77/172 (44%), Gaps = 9/172 (5%)

Query: 11  NRKNLPNNCLIQSFLSLISKGQLS-EAISSLDLLAQRGIRLPAETLAFILQQCAESKSLK 69
           NR  +  +C++ ++    S   +  EAI   + +   G+     TL  +L  CA+  SL 
Sbjct: 327 NRNVVSWSCMVAAY----SHANMPDEAIRIFNDMIAAGVEPIDATLVSVLSACAQLCSLD 382

Query: 70  LGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGY 129
           +G  ++    ++ +   T  LSN  I M+ KCG    A ++F  +  KN+ S+N M+  +
Sbjct: 383 VGTWLYDTYIVSHKVELTPNLSNAFIDMFAKCGDVGAASRLFSNMEDKNVVSWNTMIMAH 442

Query: 130 ANLGMMKHARNLFDNMAERDVVSWNTMIIGY----AKSGAVEEGLKFYKVLR 177
              G  + A +LF       ++      IG     +  G V EG   +K ++
Sbjct: 443 GLHGQPEEALHLFQEFKGNGILPDEATYIGVLSACSHGGLVSEGRCHFKEMK 494


>gi|296082942|emb|CBI22243.3| unnamed protein product [Vitis vinifera]
          Length = 526

 Score =  314 bits (804), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 168/475 (35%), Positives = 269/475 (56%), Gaps = 33/475 (6%)

Query: 133 GMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGIL 192
           G M +A  LF ++ E D   WNTMI G A+S +    +  Y  +    +  ++F+F  +L
Sbjct: 26  GTMAYAHQLFPHITEPDTFMWNTMIRGSAQSPSPLNAISLYSQMENGCVRPDKFTFPFVL 85

Query: 193 TICVKLEELKLTRQVHGQVLVTGFLSN-------------------------------VV 221
             C +L  +K+   VHG+V   GF SN                               VV
Sbjct: 86  KACTRLCWVKMGFGVHGRVFRLGFESNTFVRNTLIYFHANCGDLAVARALFDGSAKRDVV 145

Query: 222 ISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKN 281
             S++   YA+ GEL  AR+LFDE   +D+++W  M++GYAK G+MESA KLF+E+P+++
Sbjct: 146 AWSALTAGYARRGELGVARQLFDEMPVKDLVSWNVMITGYAKRGEMESARKLFDEVPKRD 205

Query: 282 PVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHG 341
            V+W  +IAGY   G  Q+ALE+F  M  +   P++ T  S L AC  +  L  G+++H 
Sbjct: 206 VVTWNAMIAGYVLCGSNQQALEMFEEMRSVGELPDEVTMLSLLSACTDLGDLDAGQRIHC 265

Query: 342 FLIRTNFRSNTIVM-SSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYD 400
            +    FR  ++++ ++LIDMY+KCG +    +VF     K+ S  WN+++  L  HG+ 
Sbjct: 266 CISEMGFRDLSVLLGNALIDMYAKCGSIVRALEVFQGMREKDVST-WNSVLGGLAFHGHA 324

Query: 401 EQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHAC 460
           E++I LF +M +  ++PD+IT   +L AC+H+G V+EG  YF+ M  +  I PN  H+ C
Sbjct: 325 EKSIHLFTEMRKLKIRPDEITFVGVLVACSHAGRVEEGRQYFDLMRDEYNIEPNIRHYGC 384

Query: 461 LIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQS 520
           +++LL +AG  ++  + ++ M  E ++ +W  L G CRIHGN+++GR+   QL+      
Sbjct: 385 MVDLLGRAGLLNEAFDFIDTMKIEPNAIVWRTLLGACRIHGNVELGRRANMQLLKMRHDE 444

Query: 521 SATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDS 575
           S  + LLS+IY++ G+   VEKVR+L+++   +KE   S IE +NK     + DS
Sbjct: 445 SGDYVLLSNIYASRGEWDGVEKVRKLMDDSGVRKEAGCSLIEGDNKALMHFLFDS 499



 Score =  162 bits (409), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 113/414 (27%), Positives = 189/414 (45%), Gaps = 72/414 (17%)

Query: 36  AISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLI 95
           AIS    +    +R    T  F+L+ C     +K+G  VH  +     ++  TF+ N LI
Sbjct: 62  AISLYSQMENGCVRPDKFTFPFVLKACTRLCWVKMGFGVHGRVFRLGFES-NTFVRNTLI 120

Query: 96  SMYFKCGS--------------DVDA-----------------RKVFDKIPVKNLFSYNN 124
             +  CG               DV A                 R++FD++PVK+L S+N 
Sbjct: 121 YFHANCGDLAVARALFDGSAKRDVVAWSALTAGYARRGELGVARQLFDEMPVKDLVSWNV 180

Query: 125 MLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCN 184
           M++GYA  G M+ AR LFD + +RDVV+WN MI GY   G+ ++ L+ ++ +R      +
Sbjct: 181 MITGYAKRGEMESARKLFDEVPKRDVVTWNAMIAGYVLCGSNQQALEMFEEMRSVGELPD 240

Query: 185 EFSFAGILTICVKLEELKLTRQVHGQVLVTGFLS-NVVISSSIVDAYAKCGELSDARRLF 243
           E +   +L+ C  L +L   +++H  +   GF   +V++ ++++D YAKCG +  A  +F
Sbjct: 241 EVTMLSLLSACTDLGDLDAGQRIHCCISEMGFRDLSVLLGNALIDMYAKCGSIVRALEVF 300

Query: 244 DETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALE 303
                +DV TW +++ G A  G  E                               K++ 
Sbjct: 301 QGMREKDVSTWNSVLGGLAFHGHAE-------------------------------KSIH 329

Query: 304 LFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLI-RTNFRSNTIVMSSLIDMY 362
           LFT M  L+IRP++ TF   L AC+    ++ G+Q    +    N   N      ++D+ 
Sbjct: 330 LFTEMRKLKIRPDEITFVGVLVACSHAGRVEEGRQYFDLMRDEYNIEPNIRHYGCMVDLL 389

Query: 363 SKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDE-------QAIRLFHD 409
            + G LN+     D    + N+++W T++ A   HG  E       Q +++ HD
Sbjct: 390 GRAGLLNEAFDFIDTMKIEPNAIVWRTLLGACRIHGNVELGRRANMQLLKMRHD 443



 Score = 65.9 bits (159), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 45/165 (27%), Positives = 84/165 (50%), Gaps = 9/165 (5%)

Query: 18  NCLIQSFLSLISKGQLSEAISSLDLLAQRGIRLPAE-TLAFILQQCAESKSLKLGKRVHL 76
           N +I  ++   S  Q  E    +  + +    LP E T+  +L  C +   L  G+R+H 
Sbjct: 210 NAMIAGYVLCGSNQQALEMFEEMRSVGE----LPDEVTMLSLLSACTDLGDLDAGQRIHC 265

Query: 77  HLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMK 136
            +     +  +  L N LI MY KCGS V A +VF  +  K++ ++N++L G A  G  +
Sbjct: 266 CISEMGFRDLSVLLGNALIDMYAKCGSIVRALEVFQGMREKDVSTWNSVLGGLAFHGHAE 325

Query: 137 HARNLFDNMAE----RDVVSWNTMIIGYAKSGAVEEGLKFYKVLR 177
            + +LF  M +     D +++  +++  + +G VEEG +++ ++R
Sbjct: 326 KSIHLFTEMRKLKIRPDEITFVGVLVACSHAGRVEEGRQYFDLMR 370


>gi|115488988|ref|NP_001066981.1| Os12g0552300 [Oryza sativa Japonica Group]
 gi|113649488|dbj|BAF30000.1| Os12g0552300 [Oryza sativa Japonica Group]
          Length = 1175

 Score =  314 bits (804), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 169/566 (29%), Positives = 297/566 (52%), Gaps = 67/566 (11%)

Query: 25  LSLISKGQLSEAISSLDLLAQ---RGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLT 81
           L L++ GQ+++   S +L  Q    GIR    T   IL+ C  ++ + LG+++H      
Sbjct: 315 LMLVAFGQINDLAKSFELFCQMQAAGIRPNQFTYPCILRTCTCTREIDLGEQIH------ 368

Query: 82  QRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNL 141
                         S+  K G + D            ++    ++  Y+  G ++ AR +
Sbjct: 369 --------------SLSVKTGFESD------------MYVSGVLIDMYSKYGWLEKARRV 402

Query: 142 FDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEEL 201
            + + E+DVVSW +MI GY +    ++ L  +K +++  I  +    A  ++ C  +  +
Sbjct: 403 LEMLKEKDVVSWTSMIAGYVQHECCKDALAAFKEMQKCGIWPDNIGLASAISGCAGINAM 462

Query: 202 KLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGY 261
           +   Q+H ++ V+G+  +V I                               W  +V+ Y
Sbjct: 463 RQGLQIHARIYVSGYSGDVSI-------------------------------WNALVNLY 491

Query: 262 AKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFS 321
           A+ G +  A   F E+  K+ ++W  L++G+ ++GL ++AL++F RM    ++ N  TF 
Sbjct: 492 ARCGRIREAFSSFEEIEHKDEITWNGLVSGFAQSGLHEEALKVFMRMDQSGVKHNVFTFV 551

Query: 322 SCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNK 381
           S L A A++  +K GKQ+H  +I+T     T V ++LI +Y KCG   D +  F     +
Sbjct: 552 SALSASANLAEIKQGKQIHARVIKTGHSFETEVGNALISLYGKCGSFEDAKMEFSEMSER 611

Query: 382 ENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTY 441
            N + WNT+I++ +QHG   +A+ LF  M +  +KP+ +T   +L AC+H GLV+EGL+Y
Sbjct: 612 -NEVSWNTIITSCSQHGRGLEALDLFDQMKKEGIKPNDVTFIGVLAACSHVGLVEEGLSY 670

Query: 442 FESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHG 501
           F+SM+ + GI P  +H+AC+I++  +AG  D+    +E+MP   D+ +W  L   C++H 
Sbjct: 671 FKSMSDEYGIRPRPDHYACVIDIFGRAGQLDRAKKFIEEMPIAADAMVWRTLLSACKVHK 730

Query: 502 NIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWI 561
           NI++G      L++  P  SA++ LLS+ Y+   K    ++VR+++ +R  +KE   SWI
Sbjct: 731 NIEVGEFAAKHLLELEPHDSASYVLLSNAYAVTEKWANRDQVRKMMRDRGVRKEPGRSWI 790

Query: 562 EIENKVHAFSVSDSLHPMRDVLYSVL 587
           E++N VHAF V D LHP+ + +Y+ L
Sbjct: 791 EVKNVVHAFFVGDRLHPLAEQIYNFL 816



 Score =  171 bits (432), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 105/371 (28%), Positives = 182/371 (49%), Gaps = 34/371 (9%)

Query: 123 NNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSIS 182
           N ++  Y+  G++  AR +F+ ++ RD VSW  M+ GYA++G  EE L  Y+ + R  + 
Sbjct: 81  NLLIDLYSKNGLVLPARRVFEELSARDNVSWVAMLSGYAQNGLGEEALGLYRQMHRAGVV 140

Query: 183 CNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRL 242
              +  + +L+ C K E     R +H Q    GF S + + ++++  Y +CG      RL
Sbjct: 141 PTPYVLSSVLSSCTKAELFAQGRLIHAQGYKHGFCSEIFVGNAVITLYLRCGSF----RL 196

Query: 243 FDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKAL 302
                                      A ++F +MP ++ V++ TLI+G+ + G G+ AL
Sbjct: 197 ---------------------------AERVFCDMPHRDTVTFNTLISGHAQCGHGEHAL 229

Query: 303 ELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMY 362
           E+F  M    + P+  T SS L ACAS+  L+ G Q+H +L +    S+ I+  SL+D+Y
Sbjct: 230 EIFEEMQFSGLSPDCVTISSLLAACASLGDLQKGTQLHSYLFKAGISSDYIMEGSLLDLY 289

Query: 363 SKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITL 422
            KCG +     +F+ +D + N +LWN M+ A  Q     ++  LF  M  + ++P++ T 
Sbjct: 290 VKCGDVETALVIFNSSD-RTNVVLWNLMLVAFGQINDLAKSFELFCQMQAAGIRPNQFTY 348

Query: 423 AVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMP 482
             IL  CT +  +  G     S++   G   +      LI++ ++ G  ++    LE M 
Sbjct: 349 PCILRTCTCTREIDLG-EQIHSLSVKTGFESDMYVSGVLIDMYSKYGWLEKARRVLE-ML 406

Query: 483 YEHDSYLWNAL 493
            E D   W ++
Sbjct: 407 KEKDVVSWTSM 417



 Score =  164 bits (414), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 111/464 (23%), Positives = 202/464 (43%), Gaps = 76/464 (16%)

Query: 35  EAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHL 94
           EA+     + + G+      L+ +L  C +++    G+ +H             F+ N +
Sbjct: 126 EALGLYRQMHRAGVVPTPYVLSSVLSSCTKAELFAQGRLIHAQ-GYKHGFCSEIFVGNAV 184

Query: 95  ISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWN 154
           I++Y +CGS                                + A  +F +M  RD V++N
Sbjct: 185 ITLYLRCGS-------------------------------FRLAERVFCDMPHRDTVTFN 213

Query: 155 TMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVT 214
           T+I G+A+ G  E  L+ ++ ++   +S +  + + +L  C  L +L+   Q+H  +   
Sbjct: 214 TLISGHAQCGHGEHALEIFEEMQFSGLSPDCVTISSLLAACASLGDLQKGTQLHSYLFKA 273

Query: 215 GFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLF 274
           G  S+ ++  S++D Y KCG++  A  +F+ +D  +V+ W  M+  + ++ D+       
Sbjct: 274 GISSDYIMEGSLLDLYVKCGDVETALVIFNSSDRTNVVLWNLMLVAFGQINDL------- 326

Query: 275 NEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLK 334
                                    K+ ELF +M    IRPNQ T+   L  C     + 
Sbjct: 327 ------------------------AKSFELFCQMQAAGIRPNQFTYPCILRTCTCTREID 362

Query: 335 HGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISAL 394
            G+Q+H   ++T F S+  V   LIDMYSK G L   R+V ++   K + + W +MI+  
Sbjct: 363 LGEQIHSLSVKTGFESDMYVSGVLIDMYSKYGWLEKARRVLEMLKEK-DVVSWTSMIAGY 421

Query: 395 TQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGL-----TYFESMTHDL 449
            QH   + A+  F +M +  + PD I LA  ++ C     +++GL      Y    + D+
Sbjct: 422 VQHECCKDALAAFKEMQKCGIWPDNIGLASAISGCAGINAMRQGLQIHARIYVSGYSGDV 481

Query: 450 GIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNAL 493
            I         L+ L A+ G   +  +  E++ ++ D   WN L
Sbjct: 482 SIW------NALVNLYARCGRIREAFSSFEEIEHK-DEITWNGL 518



 Score =  115 bits (288), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 95/417 (22%), Positives = 177/417 (42%), Gaps = 74/417 (17%)

Query: 202 KLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGY 261
           ++  ++H + +  G     ++ + ++D Y+K G +  ARR+F+E  ARD ++W  M+SGY
Sbjct: 59  QVVPEIHAKAVTRGLGKYRIVGNLLIDLYSKNGLVLPARRVFEELSARDNVSWVAMLSGY 118

Query: 262 AKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFS 321
           A+                               NGLG++AL L+ +M    + P  +  S
Sbjct: 119 AQ-------------------------------NGLGEEALGLYRQMHRAGVVPTPYVLS 147

Query: 322 SCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNK 381
           S L +C        G+ +H    +  F S   V +++I +Y +CG      +VF    ++
Sbjct: 148 SVLSSCTKAELFAQGRLIHAQGYKHGFCSEIFVGNAVITLYLRCGSFRLAERVFCDMPHR 207

Query: 382 ENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTY 441
            +++ +NT+IS   Q G+ E A+ +F +M  S + PD +T++ +L AC   G +Q+G T 
Sbjct: 208 -DTVTFNTLISGHAQCGHGEHALEIFEEMQFSGLSPDCVTISSLLAACASLGDLQKG-TQ 265

Query: 442 FESMTHDLGIIPNQEHHACLIELLAQAG----------CSD------------------- 472
             S     GI  +      L++L  + G           SD                   
Sbjct: 266 LHSYLFKAGISSDYIMEGSLLDLYVKCGDVETALVIFNSSDRTNVVLWNLMLVAFGQIND 325

Query: 473 -----QLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSA-THGL 526
                +L  Q++      + + +  +   C     ID+G ++    +    +S     G+
Sbjct: 326 LAKSFELFCQMQAAGIRPNQFTYPCILRTCTCTREIDLGEQIHSLSVKTGFESDMYVSGV 385

Query: 527 LSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIE-IENKVHAFSVSDSLHPMRDV 582
           L  +YS  G    +EK R+++     K++  +SW   I   V      D+L   +++
Sbjct: 386 LIDMYSKYG---WLEKARRVLE--MLKEKDVVSWTSMIAGYVQHECCKDALAAFKEM 437



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 67/284 (23%), Positives = 115/284 (40%), Gaps = 46/284 (16%)

Query: 18  NCLIQSFLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLH 77
           N L+  F      G   EA+     + Q G++    T    L   A    +K GK++H  
Sbjct: 516 NGLVSGF---AQSGLHEEALKVFMRMDQSGVKHNVFTFVSALSASANLAEIKQGKQIHAR 572

Query: 78  LKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKH 137
           +  T     T  + N LIS+Y KCGS  DA+  F ++  +N  S+N +++  +  G    
Sbjct: 573 VIKTGHSFETE-VGNALISLYGKCGSFEDAKMEFSEMSERNEVSWNTIITSCSQHGRGLE 631

Query: 138 ARNLFDNMAERDVVSWNTMIIGYAKS----GAVEEGLKFYKVLRRFSISCNEFSFAGILT 193
           A +LFD M +  +   +   IG   +    G VEEGL ++K +       +E+       
Sbjct: 632 ALDLFDQMKKEGIKPNDVTFIGVLAACSHVGLVEEGLSYFKSM------SDEYGIR---- 681

Query: 194 ICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETD-ARDVL 252
                      R  H               + ++D + + G+L  A++  +E   A D +
Sbjct: 682 ----------PRPDH--------------YACVIDIFGRAGQLDRAKKFIEEMPIAADAM 717

Query: 253 TWTTMVSG---YAKLGDMESASKLFNEMPEKNPVSWTTLIAGYT 293
            W T++S    +  +   E A+K   E+   +  S+  L   Y 
Sbjct: 718 VWRTLLSACKVHKNIEVGEFAAKHLLELEPHDSASYVLLSNAYA 761


>gi|108862806|gb|ABA99524.2| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 1176

 Score =  314 bits (804), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 169/566 (29%), Positives = 297/566 (52%), Gaps = 67/566 (11%)

Query: 25  LSLISKGQLSEAISSLDLLAQ---RGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLT 81
           L L++ GQ+++   S +L  Q    GIR    T   IL+ C  ++ + LG+++H      
Sbjct: 315 LMLVAFGQINDLAKSFELFCQMQAAGIRPNQFTYPCILRTCTCTREIDLGEQIH------ 368

Query: 82  QRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNL 141
                         S+  K G + D            ++    ++  Y+  G ++ AR +
Sbjct: 369 --------------SLSVKTGFESD------------MYVSGVLIDMYSKYGWLEKARRV 402

Query: 142 FDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEEL 201
            + + E+DVVSW +MI GY +    ++ L  +K +++  I  +    A  ++ C  +  +
Sbjct: 403 LEMLKEKDVVSWTSMIAGYVQHECCKDALAAFKEMQKCGIWPDNIGLASAISGCAGINAM 462

Query: 202 KLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGY 261
           +   Q+H ++ V+G+  +V I                               W  +V+ Y
Sbjct: 463 RQGLQIHARIYVSGYSGDVSI-------------------------------WNALVNLY 491

Query: 262 AKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFS 321
           A+ G +  A   F E+  K+ ++W  L++G+ ++GL ++AL++F RM    ++ N  TF 
Sbjct: 492 ARCGRIREAFSSFEEIEHKDEITWNGLVSGFAQSGLHEEALKVFMRMDQSGVKHNVFTFV 551

Query: 322 SCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNK 381
           S L A A++  +K GKQ+H  +I+T     T V ++LI +Y KCG   D +  F     +
Sbjct: 552 SALSASANLAEIKQGKQIHARVIKTGHSFETEVGNALISLYGKCGSFEDAKMEFSEMSER 611

Query: 382 ENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTY 441
            N + WNT+I++ +QHG   +A+ LF  M +  +KP+ +T   +L AC+H GLV+EGL+Y
Sbjct: 612 -NEVSWNTIITSCSQHGRGLEALDLFDQMKKEGIKPNDVTFIGVLAACSHVGLVEEGLSY 670

Query: 442 FESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHG 501
           F+SM+ + GI P  +H+AC+I++  +AG  D+    +E+MP   D+ +W  L   C++H 
Sbjct: 671 FKSMSDEYGIRPRPDHYACVIDIFGRAGQLDRAKKFIEEMPIAADAMVWRTLLSACKVHK 730

Query: 502 NIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWI 561
           NI++G      L++  P  SA++ LLS+ Y+   K    ++VR+++ +R  +KE   SWI
Sbjct: 731 NIEVGEFAAKHLLELEPHDSASYVLLSNAYAVTEKWANRDQVRKMMRDRGVRKEPGRSWI 790

Query: 562 EIENKVHAFSVSDSLHPMRDVLYSVL 587
           E++N VHAF V D LHP+ + +Y+ L
Sbjct: 791 EVKNVVHAFFVGDRLHPLAEQIYNFL 816



 Score =  171 bits (432), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 105/371 (28%), Positives = 182/371 (49%), Gaps = 34/371 (9%)

Query: 123 NNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSIS 182
           N ++  Y+  G++  AR +F+ ++ RD VSW  M+ GYA++G  EE L  Y+ + R  + 
Sbjct: 81  NLLIDLYSKNGLVLPARRVFEELSARDNVSWVAMLSGYAQNGLGEEALGLYRQMHRAGVV 140

Query: 183 CNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRL 242
              +  + +L+ C K E     R +H Q    GF S + + ++++  Y +CG      RL
Sbjct: 141 PTPYVLSSVLSSCTKAELFAQGRLIHAQGYKHGFCSEIFVGNAVITLYLRCGSF----RL 196

Query: 243 FDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKAL 302
                                      A ++F +MP ++ V++ TLI+G+ + G G+ AL
Sbjct: 197 ---------------------------AERVFCDMPHRDTVTFNTLISGHAQCGHGEHAL 229

Query: 303 ELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMY 362
           E+F  M    + P+  T SS L ACAS+  L+ G Q+H +L +    S+ I+  SL+D+Y
Sbjct: 230 EIFEEMQFSGLSPDCVTISSLLAACASLGDLQKGTQLHSYLFKAGISSDYIMEGSLLDLY 289

Query: 363 SKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITL 422
            KCG +     +F+ +D + N +LWN M+ A  Q     ++  LF  M  + ++P++ T 
Sbjct: 290 VKCGDVETALVIFNSSD-RTNVVLWNLMLVAFGQINDLAKSFELFCQMQAAGIRPNQFTY 348

Query: 423 AVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMP 482
             IL  CT +  +  G     S++   G   +      LI++ ++ G  ++    LE M 
Sbjct: 349 PCILRTCTCTREIDLG-EQIHSLSVKTGFESDMYVSGVLIDMYSKYGWLEKARRVLE-ML 406

Query: 483 YEHDSYLWNAL 493
            E D   W ++
Sbjct: 407 KEKDVVSWTSM 417



 Score =  164 bits (414), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 111/464 (23%), Positives = 202/464 (43%), Gaps = 76/464 (16%)

Query: 35  EAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHL 94
           EA+     + + G+      L+ +L  C +++    G+ +H             F+ N +
Sbjct: 126 EALGLYRQMHRAGVVPTPYVLSSVLSSCTKAELFAQGRLIHAQ-GYKHGFCSEIFVGNAV 184

Query: 95  ISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWN 154
           I++Y +CGS                                + A  +F +M  RD V++N
Sbjct: 185 ITLYLRCGS-------------------------------FRLAERVFCDMPHRDTVTFN 213

Query: 155 TMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVT 214
           T+I G+A+ G  E  L+ ++ ++   +S +  + + +L  C  L +L+   Q+H  +   
Sbjct: 214 TLISGHAQCGHGEHALEIFEEMQFSGLSPDCVTISSLLAACASLGDLQKGTQLHSYLFKA 273

Query: 215 GFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLF 274
           G  S+ ++  S++D Y KCG++  A  +F+ +D  +V+ W  M+  + ++ D+       
Sbjct: 274 GISSDYIMEGSLLDLYVKCGDVETALVIFNSSDRTNVVLWNLMLVAFGQINDL------- 326

Query: 275 NEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLK 334
                                    K+ ELF +M    IRPNQ T+   L  C     + 
Sbjct: 327 ------------------------AKSFELFCQMQAAGIRPNQFTYPCILRTCTCTREID 362

Query: 335 HGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISAL 394
            G+Q+H   ++T F S+  V   LIDMYSK G L   R+V ++   K + + W +MI+  
Sbjct: 363 LGEQIHSLSVKTGFESDMYVSGVLIDMYSKYGWLEKARRVLEMLKEK-DVVSWTSMIAGY 421

Query: 395 TQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGL-----TYFESMTHDL 449
            QH   + A+  F +M +  + PD I LA  ++ C     +++GL      Y    + D+
Sbjct: 422 VQHECCKDALAAFKEMQKCGIWPDNIGLASAISGCAGINAMRQGLQIHARIYVSGYSGDV 481

Query: 450 GIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNAL 493
            I         L+ L A+ G   +  +  E++ ++ D   WN L
Sbjct: 482 SIW------NALVNLYARCGRIREAFSSFEEIEHK-DEITWNGL 518



 Score =  115 bits (288), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 95/417 (22%), Positives = 177/417 (42%), Gaps = 74/417 (17%)

Query: 202 KLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGY 261
           ++  ++H + +  G     ++ + ++D Y+K G +  ARR+F+E  ARD ++W  M+SGY
Sbjct: 59  QVVPEIHAKAVTRGLGKYRIVGNLLIDLYSKNGLVLPARRVFEELSARDNVSWVAMLSGY 118

Query: 262 AKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFS 321
           A+                               NGLG++AL L+ +M    + P  +  S
Sbjct: 119 AQ-------------------------------NGLGEEALGLYRQMHRAGVVPTPYVLS 147

Query: 322 SCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNK 381
           S L +C        G+ +H    +  F S   V +++I +Y +CG      +VF    ++
Sbjct: 148 SVLSSCTKAELFAQGRLIHAQGYKHGFCSEIFVGNAVITLYLRCGSFRLAERVFCDMPHR 207

Query: 382 ENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTY 441
            +++ +NT+IS   Q G+ E A+ +F +M  S + PD +T++ +L AC   G +Q+G T 
Sbjct: 208 -DTVTFNTLISGHAQCGHGEHALEIFEEMQFSGLSPDCVTISSLLAACASLGDLQKG-TQ 265

Query: 442 FESMTHDLGIIPNQEHHACLIELLAQAG----------CSD------------------- 472
             S     GI  +      L++L  + G           SD                   
Sbjct: 266 LHSYLFKAGISSDYIMEGSLLDLYVKCGDVETALVIFNSSDRTNVVLWNLMLVAFGQIND 325

Query: 473 -----QLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSA-THGL 526
                +L  Q++      + + +  +   C     ID+G ++    +    +S     G+
Sbjct: 326 LAKSFELFCQMQAAGIRPNQFTYPCILRTCTCTREIDLGEQIHSLSVKTGFESDMYVSGV 385

Query: 527 LSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIE-IENKVHAFSVSDSLHPMRDV 582
           L  +YS  G    +EK R+++     K++  +SW   I   V      D+L   +++
Sbjct: 386 LIDMYSKYG---WLEKARRVLE--MLKEKDVVSWTSMIAGYVQHECCKDALAAFKEM 437



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 67/284 (23%), Positives = 115/284 (40%), Gaps = 46/284 (16%)

Query: 18  NCLIQSFLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLH 77
           N L+  F      G   EA+     + Q G++    T    L   A    +K GK++H  
Sbjct: 516 NGLVSGF---AQSGLHEEALKVFMRMDQSGVKHNVFTFVSALSASANLAEIKQGKQIHAR 572

Query: 78  LKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKH 137
           +  T     T  + N LIS+Y KCGS  DA+  F ++  +N  S+N +++  +  G    
Sbjct: 573 VIKTGHSFETE-VGNALISLYGKCGSFEDAKMEFSEMSERNEVSWNTIITSCSQHGRGLE 631

Query: 138 ARNLFDNMAERDVVSWNTMIIGYAKS----GAVEEGLKFYKVLRRFSISCNEFSFAGILT 193
           A +LFD M +  +   +   IG   +    G VEEGL ++K +       +E+       
Sbjct: 632 ALDLFDQMKKEGIKPNDVTFIGVLAACSHVGLVEEGLSYFKSM------SDEYGIR---- 681

Query: 194 ICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETD-ARDVL 252
                      R  H               + ++D + + G+L  A++  +E   A D +
Sbjct: 682 ----------PRPDH--------------YACVIDIFGRAGQLDRAKKFIEEMPIAADAM 717

Query: 253 TWTTMVSG---YAKLGDMESASKLFNEMPEKNPVSWTTLIAGYT 293
            W T++S    +  +   E A+K   E+   +  S+  L   Y 
Sbjct: 718 VWRTLLSACKVHKNIEVGEFAAKHLLELEPHDSASYVLLSNAYA 761


>gi|297605437|ref|NP_001057211.2| Os06g0228900 [Oryza sativa Japonica Group]
 gi|255676854|dbj|BAF19125.2| Os06g0228900 [Oryza sativa Japonica Group]
          Length = 695

 Score =  314 bits (804), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 174/555 (31%), Positives = 283/555 (50%), Gaps = 74/555 (13%)

Query: 107 ARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAV 166
           AR++FD++P +++ ++N +L  YA  G+M  AR LFD M +R+  SWNTM+ G+  +G V
Sbjct: 84  ARRLFDEMPQRDVVTWNTLLGAYARRGLMDEARRLFDEMPQRNAASWNTMVTGFFAAGQV 143

Query: 167 EEGLKFYKVL-----------------------------RRFSISCNE------------ 185
            + L  +  +                             +R S++  +            
Sbjct: 144 VKALDVFDAMPAKDSASLSTMVSGFTKNGMLHEAEELLTKRLSVTDMDKAVDAYNTLIVA 203

Query: 186 FSFAGILTICVKLEELKLTRQV-HGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFD 244
           +  AG  +   +L ++    Q  H  +   GF  NVV  +S++  Y K G++  AR LF+
Sbjct: 204 YGQAGRFSDAKRLFDMIPKGQYQHNMLKRKGFERNVVSWNSMMICYIKAGDVCSARALFN 263

Query: 245 ETDARDVLTWTTMVSGYAKLGDMESASKLFNEMP-------------------------- 278
           E   +D+++W TM+SGY +  DM+ + KLF EMP                          
Sbjct: 264 EMPDKDLVSWNTMISGYTQASDMKESEKLFWEMPDPDTVSWNLIIQGFMQKGEAEHARGF 323

Query: 279 -----EKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSL 333
                E+  +SW T+I+GY +NG    +++LF++M+ +   P++HTFSS L ACASI  L
Sbjct: 324 FDRMPERGTISWNTMISGYEKNGNYISSVKLFSKMLEVGEIPDRHTFSSVLAACASIPML 383

Query: 334 KHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISA 393
             G Q+H  L+  +F  +T + ++LI MYS+CG LND   +F     K++ + WN +I  
Sbjct: 384 GLGAQIHQ-LVEKSFVPDTAISNALITMYSRCGALNDAEAIFKQMHTKKDLVSWNALIGC 442

Query: 394 LTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIP 453
              HG   +A++LF +M R+ V P  IT   +L+AC ++GLV EG   F++M H+ GI+ 
Sbjct: 443 YEHHGRATKALQLFKEMRRAKVMPTHITFVSLLSACVNAGLVSEGRMVFDTMVHEYGIVA 502

Query: 454 NQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQL 513
             EH+A L+ L+ + G  D  +  +  MP   D  +W A  G C    N  + +    +L
Sbjct: 503 RIEHYAALVNLIGRHGQLDDALEVINSMPMAPDRSVWGAFLGACTAKKNEPLAQMAAKEL 562

Query: 514 IDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVS 573
              NP SSA + L+ ++++  GK      VR+ +  +   K+   SWI++E K+H F   
Sbjct: 563 STINPDSSAPYVLIHNLHAHEGKWGSAAVVREEMERQGIYKQPGYSWIDLEGKMHVFISG 622

Query: 574 DSLHPMRDVLYSVLE 588
           D+ HP    ++SVLE
Sbjct: 623 DTWHPNAQEIFSVLE 637



 Score =  138 bits (348), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 94/365 (25%), Positives = 172/365 (47%), Gaps = 52/365 (14%)

Query: 92  NHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVV 151
           N  ++   + G    AR++FD +P +++ ++N++L+G A     + AR  FD M  RD V
Sbjct: 4   NRSLAALLRAGRYGAARRLFDALPARSVVTWNSLLAGLARRPDARAAREFFDAMPVRDAV 63

Query: 152 SWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQV 211
           SWNT++  Y+ S                                   + L   R++  ++
Sbjct: 64  SWNTLLAAYSASP--------------------------------HPDHLAAARRLFDEM 91

Query: 212 LVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESAS 271
                  +VV  ++++ AYA+ G + +ARRLFDE   R+  +W TMV+G+   G +  A 
Sbjct: 92  P----QRDVVTWNTLLGAYARRGLMDEARRLFDEMPQRNAASWNTMVTGFFAAGQVVKAL 147

Query: 272 KLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFT-RMMILRIRPNQHTFSSCLCACASI 330
            +F+ MP K+  S +T+++G+T+NG+  +A EL T R+ +  +      +++ + A    
Sbjct: 148 DVFDAMPAKDSASLSTMVSGFTKNGMLHEAEELLTKRLSVTDMDKAVDAYNTLIVAYGQA 207

Query: 331 VSLKHGKQV----------HGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDN 380
                 K++          H  L R  F  N +  +S++  Y K G +   R +F+   +
Sbjct: 208 GRFSDAKRLFDMIPKGQYQHNMLKRKGFERNVVSWNSMMICYIKAGDVCSARALFNEMPD 267

Query: 381 KENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLT 440
           K+  + WNTMIS  TQ    +++ +LF +M      PD ++  +I+      G  +    
Sbjct: 268 KD-LVSWNTMISGYTQASDMKESEKLFWEM----PDPDTVSWNLIIQGFMQKGEAEHARG 322

Query: 441 YFESM 445
           +F+ M
Sbjct: 323 FFDRM 327



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 74/351 (21%), Positives = 138/351 (39%), Gaps = 68/351 (19%)

Query: 86  PTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNM 145
           P T   N +I  + + G    AR  FD++P +   S+N M+SGY   G    +  LF  M
Sbjct: 299 PDTVSWNLIIQGFMQKGEAEHARGFFDRMPERGTISWNTMISGYEKNGNYISSVKLFSKM 358

Query: 146 AERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTR 205
            E   +                                +  +F+ +L  C  +  L L  
Sbjct: 359 LEVGEIP-------------------------------DRHTFSSVLAACASIPMLGLGA 387

Query: 206 QVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDA-RDVLTWTTMVSGYAKL 264
           Q+H Q++   F+ +  IS++++  Y++CG L+DA  +F +    +D+++W  ++  Y   
Sbjct: 388 QIH-QLVEKSFVPDTAISNALITMYSRCGALNDAEAIFKQMHTKKDLVSWNALIGCY--- 443

Query: 265 GDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCL 324
                                         +G   KAL+LF  M   ++ P   TF S L
Sbjct: 444 ----------------------------EHHGRATKALQLFKEMRRAKVMPTHITFVSLL 475

Query: 325 CACASIVSLKHGKQVHGFLIRT-NFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKEN 383
            AC +   +  G+ V   ++      +     ++L+++  + G L+D  +V +      +
Sbjct: 476 SACVNAGLVSEGRMVFDTMVHEYGIVARIEHYAALVNLIGRHGQLDDALEVINSMPMAPD 535

Query: 384 SMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVIL-NACTHSG 433
             +W   + A T    +  A     ++  S++ PD     V++ N   H G
Sbjct: 536 RSVWGAFLGACTAKKNEPLAQMAAKEL--STINPDSSAPYVLIHNLHAHEG 584



 Score = 55.8 bits (133), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 52/235 (22%), Positives = 96/235 (40%), Gaps = 38/235 (16%)

Query: 54  TLAFILQQCAESKSLKLGKRVHLHLKLTQRK-TPTTFLSNHLISMYFKCGSDVDARKVFD 112
           T + +L  CA    L LG ++H   +L ++   P T +SN LI+MY +CG+  DA  +F 
Sbjct: 369 TFSSVLAACASIPMLGLGAQIH---QLVEKSFVPDTAISNALITMYSRCGALNDAEAIFK 425

Query: 113 KIPV-KNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLK 171
           ++   K+L S+N ++  Y +                                G   + L+
Sbjct: 426 QMHTKKDLVSWNALIGCYEH-------------------------------HGRATKALQ 454

Query: 172 FYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVL-VTGFLSNVVISSSIVDAY 230
            +K +RR  +     +F  +L+ CV    +   R V   ++   G ++ +   +++V+  
Sbjct: 455 LFKEMRRAKVMPTHITFVSLLSACVNAGLVSEGRMVFDTMVHEYGIVARIEHYAALVNLI 514

Query: 231 AKCGELSDARRLFDETD-ARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVS 284
            + G+L DA  + +    A D   W   +       +   A     E+   NP S
Sbjct: 515 GRHGQLDDALEVINSMPMAPDRSVWGAFLGACTAKKNEPLAQMAAKELSTINPDS 569


>gi|225439325|ref|XP_002267596.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g06540-like [Vitis vinifera]
          Length = 623

 Score =  314 bits (804), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 159/475 (33%), Positives = 274/475 (57%), Gaps = 9/475 (1%)

Query: 134 MMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILT 193
           ++ +A  +F  +   ++  +N MI G++ S   ++   FY   +R  +  +  +F  ++ 
Sbjct: 68  LIDYASRIFSQIQNPNLFIFNAMIRGHSGSKNPDQAFHFYVQSQRQGLLPDNLTFPFLVK 127

Query: 194 ICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLT 253
            C KL  + +  Q HG ++  GF  +V + +S+V  YA  G+   A  +F      DV++
Sbjct: 128 SCTKLHCISMGSQAHGHIIKHGFEKDVYVQNSLVHMYATFGDTEAATLIFQRMYYVDVVS 187

Query: 254 WTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRI 313
           WT+M+ G+ K GD+ESA KLF++MPEKN V+W+T+I+GY +N    KA+ELF  +    +
Sbjct: 188 WTSMIRGFNKCGDVESARKLFDQMPEKNLVTWSTMISGYAQNNHFDKAVELFKVLQSQGV 247

Query: 314 RPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQ 373
           R N+    S + +CA + +L+ G++ H ++++     N I+ ++L+DMY++CG ++    
Sbjct: 248 RANETVMVSVISSCAHLGALELGERAHDYVVKNGMTLNLILGTALVDMYARCGSIDKAVW 307

Query: 374 VF-DLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHS 432
           VF DL +   +++ W  +I+ L  HGY E++++ F  MV + + P  IT   +L+AC+H 
Sbjct: 308 VFEDLPE--RDTLSWTALIAGLAMHGYSERSLKYFATMVEAGLTPRDITFTAVLSACSHG 365

Query: 433 GLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNA 492
           GLV+ G   FESM  D  + P  EH+ C+++LL +AG  ++    + KMP + ++ +W A
Sbjct: 366 GLVERGFQIFESMKRDHRVEPRLEHYGCMVDLLGRAGKLEEAERFVLKMPVKPNAPVWGA 425

Query: 493 LHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQF 552
           L G CRIH N ++G +V   LI   PQ S  + LLS+IY+   +   V ++RQ++  +  
Sbjct: 426 LLGACRIHKNAEIGERVGKILIQLLPQHSGYYVLLSNIYANAKEWEKVTEMRQMMKAKGL 485

Query: 553 KKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQL------AGQMGEDAPSL 601
           KK    S IE++ +VH F++ DS HP  D +  + E++      AG  G  A +L
Sbjct: 486 KKPPGHSLIELDGRVHKFTIGDSSHPEMDKIERMWEEILMRIRAAGYRGNTADAL 540



 Score =  146 bits (369), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 75/270 (27%), Positives = 146/270 (54%), Gaps = 6/270 (2%)

Query: 44  AQRGIRLPAE-TLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCG 102
           +QR   LP   T  F+++ C +   + +G + H H+ +        ++ N L+ MY   G
Sbjct: 110 SQRQGLLPDNLTFPFLVKSCTKLHCISMGSQAHGHI-IKHGFEKDVYVQNSLVHMYATFG 168

Query: 103 SDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAK 162
               A  +F ++   ++ S+ +M+ G+   G ++ AR LFD M E+++V+W+TMI GYA+
Sbjct: 169 DTEAATLIFQRMYYVDVVSWTSMIRGFNKCGDVESARKLFDQMPEKNLVTWSTMISGYAQ 228

Query: 163 SGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVI 222
           +   ++ ++ +KVL+   +  NE     +++ C  L  L+L  + H  V+  G   N+++
Sbjct: 229 NNHFDKAVELFKVLQSQGVRANETVMVSVISSCAHLGALELGERAHDYVVKNGMTLNLIL 288

Query: 223 SSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKN- 281
            +++VD YA+CG +  A  +F++   RD L+WT +++G A  G  E + K F  M E   
Sbjct: 289 GTALVDMYARCGSIDKAVWVFEDLPERDTLSWTALIAGLAMHGYSERSLKYFATMVEAGL 348

Query: 282 ---PVSWTTLIAGYTRNGLGQKALELFTRM 308
               +++T +++  +  GL ++  ++F  M
Sbjct: 349 TPRDITFTAVLSACSHGGLVERGFQIFESM 378



 Score = 62.4 bits (150), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 37/152 (24%), Positives = 74/152 (48%), Gaps = 7/152 (4%)

Query: 32  QLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLS 91
              +A+    +L  +G+R     +  ++  CA   +L+LG+R H ++ +    T    L 
Sbjct: 231 HFDKAVELFKVLQSQGVRANETVMVSVISSCAHLGALELGERAHDYV-VKNGMTLNLILG 289

Query: 92  NHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAE---- 147
             L+ MY +CGS   A  VF+ +P ++  S+  +++G A  G  + +   F  M E    
Sbjct: 290 TALVDMYARCGSIDKAVWVFEDLPERDTLSWTALIAGLAMHGYSERSLKYFATMVEAGLT 349

Query: 148 -RDVVSWNTMIIGYAKSGAVEEGLKFYKVLRR 178
            RD +++  ++   +  G VE G + ++ ++R
Sbjct: 350 PRD-ITFTAVLSACSHGGLVERGFQIFESMKR 380



 Score = 45.4 bits (106), Expect = 0.091,   Method: Compositional matrix adjust.
 Identities = 50/215 (23%), Positives = 88/215 (40%), Gaps = 21/215 (9%)

Query: 311 LRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLI----DMYSKCG 366
           LR++ N   FS   C+      L H K +H ++IRT+   +    S LI    D  S   
Sbjct: 14  LRLK-NPKLFSLETCS-----DLTHLKIIHAYMIRTHIICDVFAASRLIAFCVDPSSGTS 67

Query: 367 CLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVIL 426
            ++   ++F    N  N  ++N MI   +     +QA   +    R  + PD +T   ++
Sbjct: 68  LIDYASRIFSQIQNP-NLFIFNAMIRGHSGSKNPDQAFHFYVQSQRQGLLPDNLTFPFLV 126

Query: 427 NACTHSGLVQEGLTYFESMTHDLGIIPNQEHHA----CLIELLAQAGCSDQLMNQLEKMP 482
            +CT    +  G     S  H   I    E        L+ + A  G ++      ++M 
Sbjct: 127 KSCTKLHCISMG-----SQAHGHIIKHGFEKDVYVQNSLVHMYATFGDTEAATLIFQRMY 181

Query: 483 YEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQN 517
           Y  D   W ++       G+++  RK+ DQ+ ++N
Sbjct: 182 YV-DVVSWTSMIRGFNKCGDVESARKLFDQMPEKN 215


>gi|225452869|ref|XP_002283796.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g15300-like [Vitis vinifera]
          Length = 550

 Score =  313 bits (803), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 168/475 (35%), Positives = 269/475 (56%), Gaps = 33/475 (6%)

Query: 133 GMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGIL 192
           G M +A  LF ++ E D   WNTMI G A+S +    +  Y  +    +  ++F+F  +L
Sbjct: 61  GTMAYAHQLFPHITEPDTFMWNTMIRGSAQSPSPLNAISLYSQMENGCVRPDKFTFPFVL 120

Query: 193 TICVKLEELKLTRQVHGQVLVTGFLSN-------------------------------VV 221
             C +L  +K+   VHG+V   GF SN                               VV
Sbjct: 121 KACTRLCWVKMGFGVHGRVFRLGFESNTFVRNTLIYFHANCGDLAVARALFDGSAKRDVV 180

Query: 222 ISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKN 281
             S++   YA+ GEL  AR+LFDE   +D+++W  M++GYAK G+MESA KLF+E+P+++
Sbjct: 181 AWSALTAGYARRGELGVARQLFDEMPVKDLVSWNVMITGYAKRGEMESARKLFDEVPKRD 240

Query: 282 PVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHG 341
            V+W  +IAGY   G  Q+ALE+F  M  +   P++ T  S L AC  +  L  G+++H 
Sbjct: 241 VVTWNAMIAGYVLCGSNQQALEMFEEMRSVGELPDEVTMLSLLSACTDLGDLDAGQRIHC 300

Query: 342 FLIRTNFRSNTIVM-SSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYD 400
            +    FR  ++++ ++LIDMY+KCG +    +VF     K+ S  WN+++  L  HG+ 
Sbjct: 301 CISEMGFRDLSVLLGNALIDMYAKCGSIVRALEVFQGMREKDVST-WNSVLGGLAFHGHA 359

Query: 401 EQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHAC 460
           E++I LF +M +  ++PD+IT   +L AC+H+G V+EG  YF+ M  +  I PN  H+ C
Sbjct: 360 EKSIHLFTEMRKLKIRPDEITFVGVLVACSHAGRVEEGRQYFDLMRDEYNIEPNIRHYGC 419

Query: 461 LIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQS 520
           +++LL +AG  ++  + ++ M  E ++ +W  L G CRIHGN+++GR+   QL+      
Sbjct: 420 MVDLLGRAGLLNEAFDFIDTMKIEPNAIVWRTLLGACRIHGNVELGRRANMQLLKMRHDE 479

Query: 521 SATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDS 575
           S  + LLS+IY++ G+   VEKVR+L+++   +KE   S IE +NK     + DS
Sbjct: 480 SGDYVLLSNIYASRGEWDGVEKVRKLMDDSGVRKEAGCSLIEGDNKALMHFLFDS 534



 Score =  162 bits (409), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 113/414 (27%), Positives = 189/414 (45%), Gaps = 72/414 (17%)

Query: 36  AISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLI 95
           AIS    +    +R    T  F+L+ C     +K+G  VH  +     ++  TF+ N LI
Sbjct: 97  AISLYSQMENGCVRPDKFTFPFVLKACTRLCWVKMGFGVHGRVFRLGFES-NTFVRNTLI 155

Query: 96  SMYFKCGS--------------DVDA-----------------RKVFDKIPVKNLFSYNN 124
             +  CG               DV A                 R++FD++PVK+L S+N 
Sbjct: 156 YFHANCGDLAVARALFDGSAKRDVVAWSALTAGYARRGELGVARQLFDEMPVKDLVSWNV 215

Query: 125 MLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCN 184
           M++GYA  G M+ AR LFD + +RDVV+WN MI GY   G+ ++ L+ ++ +R      +
Sbjct: 216 MITGYAKRGEMESARKLFDEVPKRDVVTWNAMIAGYVLCGSNQQALEMFEEMRSVGELPD 275

Query: 185 EFSFAGILTICVKLEELKLTRQVHGQVLVTGFLS-NVVISSSIVDAYAKCGELSDARRLF 243
           E +   +L+ C  L +L   +++H  +   GF   +V++ ++++D YAKCG +  A  +F
Sbjct: 276 EVTMLSLLSACTDLGDLDAGQRIHCCISEMGFRDLSVLLGNALIDMYAKCGSIVRALEVF 335

Query: 244 DETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALE 303
                +DV TW +++ G A  G  E                               K++ 
Sbjct: 336 QGMREKDVSTWNSVLGGLAFHGHAE-------------------------------KSIH 364

Query: 304 LFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLI-RTNFRSNTIVMSSLIDMY 362
           LFT M  L+IRP++ TF   L AC+    ++ G+Q    +    N   N      ++D+ 
Sbjct: 365 LFTEMRKLKIRPDEITFVGVLVACSHAGRVEEGRQYFDLMRDEYNIEPNIRHYGCMVDLL 424

Query: 363 SKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDE-------QAIRLFHD 409
            + G LN+     D    + N+++W T++ A   HG  E       Q +++ HD
Sbjct: 425 GRAGLLNEAFDFIDTMKIEPNAIVWRTLLGACRIHGNVELGRRANMQLLKMRHD 478



 Score = 85.9 bits (211), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 89/377 (23%), Positives = 144/377 (38%), Gaps = 106/377 (28%)

Query: 195 CVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDA--YAKCGELSDARRLFDETDARDVL 252
           C  +  LK   Q+H  ++V GF SN      ++ A   A  G ++ A +LF      D  
Sbjct: 23  CTTIGTLK---QIHASMIVKGFNSNTSALRELIYASSIAISGTMAYAHQLFPHITEPDTF 79

Query: 253 TWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILR 312
            W TM+ G A     +S S L                           A+ L+++M    
Sbjct: 80  MWNTMIRGSA-----QSPSPL--------------------------NAISLYSQMENGC 108

Query: 313 IRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGR 372
           +RP++ TF   L AC  +  +K G  VHG + R  F SNT V ++LI  ++ CG L   R
Sbjct: 109 VRPDKFTFPFVLKACTRLCWVKMGFGVHGRVFRLGFESNTFVRNTLIYFHANCGDLAVAR 168

Query: 373 QVFDLTDNKE------------------------------NSMLWNTMISALTQHG---- 398
            +FD +  ++                              + + WN MI+   + G    
Sbjct: 169 ALFDGSAKRDVVAWSALTAGYARRGELGVARQLFDEMPVKDLVSWNVMITGYAKRGEMES 228

Query: 399 ----YDE-----------------------QAIRLFHDMVRSSVKPDKITLAVILNACTH 431
               +DE                       QA+ +F +M      PD++T+  +L+ACT 
Sbjct: 229 ARKLFDEVPKRDVVTWNAMIAGYVLCGSNQQALEMFEEMRSVGELPDEVTMLSLLSACTD 288

Query: 432 SGLVQEG----LTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDS 487
            G +  G        E    DL ++        LI++ A+ G   + +   + M  E D 
Sbjct: 289 LGDLDAGQRIHCCISEMGFRDLSVLLGN----ALIDMYAKCGSIVRALEVFQGM-REKDV 343

Query: 488 YLWNALHGVCRIHGNID 504
             WN++ G    HG+ +
Sbjct: 344 STWNSVLGGLAFHGHAE 360



 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 67/250 (26%), Positives = 103/250 (41%), Gaps = 20/250 (8%)

Query: 315 PNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKC--GCLNDGR 372
           P++   S    +C +I +LK   Q+H  +I   F SNT  +  LI   S    G +    
Sbjct: 11  PSRQQRSQLWRSCTTIGTLK---QIHASMIVKGFNSNTSALRELIYASSIAISGTMAYAH 67

Query: 373 QVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHS 432
           Q+F     + ++ +WNTMI    Q      AI L+  M    V+PDK T   +L ACT  
Sbjct: 68  QLFPHI-TEPDTFMWNTMIRGSAQSPSPLNAISLYSQMENGCVRPDKFTFPFVLKACTRL 126

Query: 433 GLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSD-QLMNQLEKMPYEHDSYLWN 491
             V+ G          LG   N      LI     A C D  +   L     + D   W+
Sbjct: 127 CWVKMGFG-VHGRVFRLGFESNTFVRNTLIYF--HANCGDLAVARALFDGSAKRDVVAWS 183

Query: 492 ALHGVCRIHGNIDMGRKVVDQLIDQNP-QSSATHGLLSSIYSALGKGRLVEKVRQLINER 550
           AL       G + + R    QL D+ P +   +  ++ + Y+  G+   +E  R+L +E 
Sbjct: 184 ALTAGYARRGELGVAR----QLFDEMPVKDLVSWNVMITGYAKRGE---MESARKLFDE- 235

Query: 551 QFKKEQAISW 560
              K   ++W
Sbjct: 236 -VPKRDVVTW 244



 Score = 65.9 bits (159), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 45/165 (27%), Positives = 84/165 (50%), Gaps = 9/165 (5%)

Query: 18  NCLIQSFLSLISKGQLSEAISSLDLLAQRGIRLPAE-TLAFILQQCAESKSLKLGKRVHL 76
           N +I  ++   S  Q  E    +  + +    LP E T+  +L  C +   L  G+R+H 
Sbjct: 245 NAMIAGYVLCGSNQQALEMFEEMRSVGE----LPDEVTMLSLLSACTDLGDLDAGQRIHC 300

Query: 77  HLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMK 136
            +     +  +  L N LI MY KCGS V A +VF  +  K++ ++N++L G A  G  +
Sbjct: 301 CISEMGFRDLSVLLGNALIDMYAKCGSIVRALEVFQGMREKDVSTWNSVLGGLAFHGHAE 360

Query: 137 HARNLFDNMAE----RDVVSWNTMIIGYAKSGAVEEGLKFYKVLR 177
            + +LF  M +     D +++  +++  + +G VEEG +++ ++R
Sbjct: 361 KSIHLFTEMRKLKIRPDEITFVGVLVACSHAGRVEEGRQYFDLMR 405


>gi|413944078|gb|AFW76727.1| hypothetical protein ZEAMMB73_427029 [Zea mays]
          Length = 794

 Score =  313 bits (803), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 162/476 (34%), Positives = 272/476 (57%), Gaps = 3/476 (0%)

Query: 117 KNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLK-FYKV 175
           +++ + N ++  Y +  ++  AR LFD MA+RDVVSW T+I GYA+ G  +E  + F ++
Sbjct: 164 QSVLAGNALVHMYTSSMLLPDARKLFDEMADRDVVSWTTLIDGYARGGLPDEAWRVFCRM 223

Query: 176 LRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGE 235
           +   S+  NE +     +   ++  L L R VH  ++ +G   +V + +++VD + KCG 
Sbjct: 224 VVAESVWPNEVTLVAAASAAGQMGLLGLGRTVHQCIVESGGRMSVNLENALVDMFGKCGC 283

Query: 236 LSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRN 295
           ++ A+ +FD    +DV +WT+MVS YAK GD+E+A+KLF E+P +N VSW+ ++A Y+  
Sbjct: 284 VAAAKEVFDGMPIKDVYSWTSMVSAYAKCGDLENAAKLFKEIPNRNVVSWSCMVAAYSHA 343

Query: 296 GLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHG-FLIRTNFRSNTIV 354
            +  +A+ +F  M+   + P   T  S L ACA + SL  G  ++  +++         +
Sbjct: 344 NMPDEAIRIFNDMIAAGVEPIDATLVSVLSACAQLCSLDVGTWLYDTYIVSHKVELTPNL 403

Query: 355 MSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSS 414
            ++ IDM++KCG +    ++F   ++K N + WNTMI A   HG  E+A+ LF +   + 
Sbjct: 404 SNAFIDMFAKCGDVGAASRLFSNMEDK-NVVSWNTMIMAHGLHGQPEEALHLFQEFKGNG 462

Query: 415 VKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQL 474
           + PD+ T   +L+AC+H GLV EG  +F+ M    GI P  EH+AC+I+LL + G   + 
Sbjct: 463 ILPDEATYIGVLSACSHGGLVSEGRCHFKEMKIVYGIEPRAEHYACMIDLLGKVGLLQEA 522

Query: 475 MNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSAL 534
                 MP   D   W AL   CR+HGN+++G+   D+L   +P  S  + L+S IY++ 
Sbjct: 523 FEVARSMPVGADEAGWGALLNACRMHGNVEIGKCAADKLAGLDPSDSGIYVLMSQIYASK 582

Query: 535 GKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQL 590
            K   V+ +R ++ +R+ KK    S IE++ K H F V+D  H   + +Y+ L  +
Sbjct: 583 SKWGQVKMLRTVMRDRRVKKNPGCSSIEVDGKCHEFLVADVSHVHSEDIYAALGNI 638



 Score =  125 bits (314), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 85/344 (24%), Positives = 158/344 (45%), Gaps = 56/344 (16%)

Query: 68  LKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLS 127
           L LG+ VH  +  +  +     L N L+ M+ KCG    A++VFD +P+K+++S+ +M+S
Sbjct: 249 LGLGRTVHQCIVESGGRMSVN-LENALVDMFGKCGCVAAAKEVFDGMPIKDVYSWTSMVS 307

Query: 128 GYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFS 187
            YA  G +++A  LF  +  R+VVSW+ M+  Y+ +   +E ++ +  +    +   + +
Sbjct: 308 AYAKCGDLENAAKLFKEIPNRNVVSWSCMVAAYSHANMPDEAIRIFNDMIAAGVEPIDAT 367

Query: 188 FAGILTICVKLEELKLTRQVHGQVLVTGFLS-NVVISSSIVDAYAKCGELSDARRLFDET 246
              +L+ C +L  L +   ++   +V+  +     +S++ +D +AKCG++  A RLF   
Sbjct: 368 LVSVLSACAQLCSLDVGTWLYDTYIVSHKVELTPNLSNAFIDMFAKCGDVGAASRLFSNM 427

Query: 247 DARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFT 306
           + ++V++W TM+  +   G  E A  LF E               +  NG          
Sbjct: 428 EDKNVVSWNTMIMAHGLHGQPEEALHLFQE---------------FKGNG---------- 462

Query: 307 RMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLI---RTNFRSNTIV--------- 354
                 I P++ T+   L AC+           HG L+   R +F+   IV         
Sbjct: 463 ------ILPDEATYIGVLSACS-----------HGGLVSEGRCHFKEMKIVYGIEPRAEH 505

Query: 355 MSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHG 398
            + +ID+  K G L +  +V        +   W  +++A   HG
Sbjct: 506 YACMIDLLGKVGLLQEAFEVARSMPVGADEAGWGALLNACRMHG 549



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 43/172 (25%), Positives = 77/172 (44%), Gaps = 9/172 (5%)

Query: 11  NRKNLPNNCLIQSFLSLISKGQLS-EAISSLDLLAQRGIRLPAETLAFILQQCAESKSLK 69
           NR  +  +C++ ++    S   +  EAI   + +   G+     TL  +L  CA+  SL 
Sbjct: 327 NRNVVSWSCMVAAY----SHANMPDEAIRIFNDMIAAGVEPIDATLVSVLSACAQLCSLD 382

Query: 70  LGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGY 129
           +G  ++    ++ +   T  LSN  I M+ KCG    A ++F  +  KN+ S+N M+  +
Sbjct: 383 VGTWLYDTYIVSHKVELTPNLSNAFIDMFAKCGDVGAASRLFSNMEDKNVVSWNTMIMAH 442

Query: 130 ANLGMMKHARNLFDNMAERDVVSWNTMIIGY----AKSGAVEEGLKFYKVLR 177
              G  + A +LF       ++      IG     +  G V EG   +K ++
Sbjct: 443 GLHGQPEEALHLFQEFKGNGILPDEATYIGVLSACSHGGLVSEGRCHFKEMK 494


>gi|334186622|ref|NP_680717.2| tetratricopeptide repeat domain-containing protein [Arabidopsis
           thaliana]
 gi|357529479|sp|Q9M4P3.3|PP316_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g16835, mitochondrial; AltName: Full=Protein DYW10;
           Flags: Precursor
 gi|332658412|gb|AEE83812.1| tetratricopeptide repeat domain-containing protein [Arabidopsis
           thaliana]
          Length = 656

 Score =  313 bits (803), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 159/482 (32%), Positives = 261/482 (54%), Gaps = 43/482 (8%)

Query: 105 VDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSG 164
           ++A ++FD+IP  + FSYN MLS Y      + A++ FD M  +D  SWNTMI GYA+ G
Sbjct: 110 MEAHQLFDEIPEPDTFSYNIMLSCYVRNVNFEKAQSFFDRMPFKDAASWNTMITGYARRG 169

Query: 165 AVEEGLK-FYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVIS 223
            +E+  + FY ++ +  +S N                                       
Sbjct: 170 EMEKARELFYSMMEKNEVSWN--------------------------------------- 190

Query: 224 SSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMP-EKNP 282
            +++  Y +CG+L  A   F     R V+ WT M++GY K   +E A  +F +M   KN 
Sbjct: 191 -AMISGYIECGDLEKASHFFKVAPVRGVVAWTAMITGYMKAKKVELAEAMFKDMTVNKNL 249

Query: 283 VSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGF 342
           V+W  +I+GY  N   +  L+LF  M+   IRPN    SS L  C+ + +L+ G+Q+H  
Sbjct: 250 VTWNAMISGYVENSRPEDGLKLFRAMLEEGIRPNSSGLSSALLGCSELSALQLGRQIHQI 309

Query: 343 LIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQ 402
           + ++   ++   ++SLI MY KCG L D  ++F++   K++ + WN MIS   QHG  ++
Sbjct: 310 VSKSTLCNDVTALTSLISMYCKCGELGDAWKLFEVM-KKKDVVAWNAMISGYAQHGNADK 368

Query: 403 AIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLI 462
           A+ LF +M+ + ++PD IT   +L AC H+GLV  G+ YFESM  D  + P  +H+ C++
Sbjct: 369 ALCLFREMIDNKIRPDWITFVAVLLACNHAGLVNIGMAYFESMVRDYKVEPQPDHYTCMV 428

Query: 463 ELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSA 522
           +LL +AG  ++ +  +  MP+   + ++  L G CR+H N+++     ++L+  N Q++A
Sbjct: 429 DLLGRAGKLEEALKLIRSMPFRPHAAVFGTLLGACRVHKNVELAEFAAEKLLQLNSQNAA 488

Query: 523 THGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDV 582
            +  L++IY++  +   V +VR+ + E    K    SWIEI NKVH F  SD +HP  D 
Sbjct: 489 GYVQLANIYASKNRWEDVARVRKRMKESNVVKVPGYSWIEIRNKVHHFRSSDRIHPELDS 548

Query: 583 LY 584
           ++
Sbjct: 549 IH 550



 Score =  129 bits (324), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 94/349 (26%), Positives = 165/349 (47%), Gaps = 41/349 (11%)

Query: 86  PTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNM 145
           P TF  N ++S Y +  +   A+  FD++P K+  S+N M++GYA  G M+ AR LF +M
Sbjct: 122 PDTFSYNIMLSCYVRNVNFEKAQSFFDRMPFKDAASWNTMITGYARRGEMEKARELFYSM 181

Query: 146 AERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTR 205
            E++ VSWN MI GY + G +E+   F+KV     +     ++  ++T  +K ++++L  
Sbjct: 182 MEKNEVSWNAMISGYIECGDLEKASHFFKVAPVRGV----VAWTAMITGYMKAKKVELAE 237

Query: 206 Q-----------VHGQVLVTGFLSNVVI------------------SSSIVDAYAKCGEL 236
                       V    +++G++ N                     SS +  A   C EL
Sbjct: 238 AMFKDMTVNKNLVTWNAMISGYVENSRPEDGLKLFRAMLEEGIRPNSSGLSSALLGCSEL 297

Query: 237 SD---ARRLFD----ETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLI 289
           S     R++       T   DV   T+++S Y K G++  A KLF  M +K+ V+W  +I
Sbjct: 298 SALQLGRQIHQIVSKSTLCNDVTALTSLISMYCKCGELGDAWKLFEVMKKKDVVAWNAMI 357

Query: 290 AGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRT-NF 348
           +GY ++G   KAL LF  M+  +IRP+  TF + L AC     +  G      ++R    
Sbjct: 358 SGYAQHGNADKALCLFREMIDNKIRPDWITFVAVLLACNHAGLVNIGMAYFESMVRDYKV 417

Query: 349 RSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQH 397
                  + ++D+  + G L +  ++      + ++ ++ T++ A   H
Sbjct: 418 EPQPDHYTCMVDLLGRAGKLEEALKLIRSMPFRPHAAVFGTLLGACRVH 466



 Score = 72.0 bits (175), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 69/302 (22%), Positives = 140/302 (46%), Gaps = 29/302 (9%)

Query: 5   FSPRGINRKNLPNNCLIQSFLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAE 64
           F    +N+  +  N +I  +   +   +  + +     + + GIR  +  L+  L  C+E
Sbjct: 240 FKDMTVNKNLVTWNAMISGY---VENSRPEDGLKLFRAMLEEGIRPNSSGLSSALLGCSE 296

Query: 65  SKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNN 124
             +L+LG+++H  +  +      T L++ LISMY KCG   DA K+F+ +  K++ ++N 
Sbjct: 297 LSALQLGRQIHQIVSKSTLCNDVTALTS-LISMYCKCGELGDAWKLFEVMKKKDVVAWNA 355

Query: 125 MLSGYANLGMMKHA----RNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYK-VLRRF 179
           M+SGYA  G    A    R + DN    D +++  +++    +G V  G+ +++ ++R +
Sbjct: 356 MISGYAQHGNADKALCLFREMIDNKIRPDWITFVAVLLACNHAGLVNIGMAYFESMVRDY 415

Query: 180 SISCNEFSFAGILTI---CVKLEE-LKLTRQV----HGQVLVTGFLSNVVISSSIVDAYA 231
            +      +  ++ +     KLEE LKL R +    H  V  T      ++ +  V    
Sbjct: 416 KVEPQPDHYTCMVDLLGRAGKLEEALKLIRSMPFRPHAAVFGT------LLGACRVHKNV 469

Query: 232 KCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAG 291
           +  E +  + L  + ++++   +  + + YA     E  +++   M E N V     + G
Sbjct: 470 ELAEFAAEKLL--QLNSQNAAGYVQLANIYASKNRWEDVARVRKRMKESNVVK----VPG 523

Query: 292 YT 293
           Y+
Sbjct: 524 YS 525



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 65/343 (18%), Positives = 124/343 (36%), Gaps = 85/343 (24%)

Query: 242 LFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAG---------- 291
           L   +D   +     +++   + GD++ A ++F+ M  KN ++W +L+ G          
Sbjct: 52  LTKPSDQDQIFPLNKIIARCVRSGDIDGALRVFHGMRAKNTITWNSLLIGISKDPSRMME 111

Query: 292 ----------------------YTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACAS 329
                                 Y RN   +KA   F RM       +  ++++ +   A 
Sbjct: 112 AHQLFDEIPEPDTFSYNIMLSCYVRNVNFEKAQSFFDRMPF----KDAASWNTMITGYAR 167

Query: 330 IVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVF-------------- 375
              ++  ++    L  +    N +  +++I  Y +CG L      F              
Sbjct: 168 RGEMEKARE----LFYSMMEKNEVSWNAMISGYIECGDLEKASHFFKVAPVRGVVAWTAM 223

Query: 376 ------------------DLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKP 417
                             D+T NK N + WN MIS   ++   E  ++LF  M+   ++P
Sbjct: 224 ITGYMKAKKVELAEAMFKDMTVNK-NLVTWNAMISGYVENSRPEDGLKLFRAMLEEGIRP 282

Query: 418 DKITLAVILNACTHSGLVQEG-----LTYFESMTHDLGIIPNQEHHACLIELLAQAGCSD 472
           +   L+  L  C+    +Q G     +    ++ +D+  + +      LI +  + G   
Sbjct: 283 NSSGLSSALLGCSELSALQLGRQIHQIVSKSTLCNDVTALTS------LISMYCKCGELG 336

Query: 473 QLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLID 515
                 E M  + D   WNA+      HGN D    +  ++ID
Sbjct: 337 DAWKLFEVMK-KKDVVAWNAMISGYAQHGNADKALCLFREMID 378


>gi|222617563|gb|EEE53695.1| hypothetical protein OsJ_00010 [Oryza sativa Japonica Group]
          Length = 1008

 Score =  313 bits (803), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 154/479 (32%), Positives = 267/479 (55%), Gaps = 32/479 (6%)

Query: 116 VKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKV 175
           V N+F  N++L  Y+    +   R LFD M ERD VS+N +I  YA +      L+ ++ 
Sbjct: 466 VLNVFVNNSLLDFYSKCDCLDDMRRLFDEMPERDNVSYNVIIAAYAWNQCAATVLRLFRE 525

Query: 176 LRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGE 235
           +++         +A +L++   L ++ + +Q+H Q+++ G  S  ++ ++++D Y+KCG 
Sbjct: 526 MQKLGFDRQVLPYATMLSVAGSLPDVHIGKQIHAQLVLLGLASEDLLGNALIDMYSKCGM 585

Query: 236 LSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRN 295
           L                               ++A   F+   EK+ +SWT LI GY +N
Sbjct: 586 L-------------------------------DAAKSNFSNRSEKSAISWTALITGYVQN 614

Query: 296 GLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVM 355
           G  ++AL+LF+ M    +RP++ TFSS + A +S+  +  G+Q+H +LIR+ ++S+    
Sbjct: 615 GQHEEALQLFSDMRRAGLRPDRATFSSIIKASSSLAMIGLGRQLHSYLIRSGYKSSVFSG 674

Query: 356 SSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSV 415
           S L+DMY+KCGCL++  + FD    + NS+ WN +ISA   +G  + AI++F  M+    
Sbjct: 675 SVLVDMYAKCGCLDEALRTFDEMPER-NSISWNAVISAYAHYGEAKNAIKMFEGMLHCGF 733

Query: 416 KPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLM 475
            PD +T   +L AC+H+GL  E + YF  M H   I P +EH+AC+I+ L + GC  Q+ 
Sbjct: 734 NPDSVTFLSVLAACSHNGLADECMKYFHLMKHQYSISPWKEHYACVIDTLGRVGCFSQVQ 793

Query: 476 NQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALG 535
             L +MP++ D  +W ++   CRIHGN ++ R   D+L    P  +  + +LS+IY+  G
Sbjct: 794 KMLVEMPFKADPIIWTSILHSCRIHGNQELARVAADKLFGMEPTDATPYVILSNIYARAG 853

Query: 536 KGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQM 594
           +      V++++ +R  +KE   SW+EI+ K+++F+ +D   PM D +   L++L  +M
Sbjct: 854 QWEDAACVKKIMRDRGVRKESGYSWVEIKQKIYSFASNDLTSPMIDEIKDELDRLYKEM 912



 Score =  159 bits (401), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 130/525 (24%), Positives = 225/525 (42%), Gaps = 93/525 (17%)

Query: 3   SNFSPRGINRKNLPNNCLIQSFLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQC 62
           S  +P G+   ++    L     SL+S G L  A +  D +  + I     +L  IL   
Sbjct: 243 SQAAPAGVTGFDVLTYRLNLGLRSLLSSGHLHRARAMFDQMPHKNIF----SLNLILSAY 298

Query: 63  AESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVF----------D 112
           + S  L   +  HL L    R   T  +   ++  +   G   DA  +F          D
Sbjct: 299 SSSGDLPAAQ--HLFLSSPHRNATTWTI---MMRAHAAAGRTSDALSLFRAMLGEGVIPD 353

Query: 113 KIPVK------------------------NLFSYNNMLSGYANLGMMKHARNLFDNMAER 148
           ++ V                         ++F  N +L  Y   G++  AR +F  M ++
Sbjct: 354 RVTVTTVLNLPGCTVPSLHPFAIKFGLDTHVFVCNTLLDAYCKHGLLAAARRVFLEMHDK 413

Query: 149 DVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVH 208
           D V++N M++G +K G   + L+ +  +RR   S                  L L +  H
Sbjct: 414 DAVTYNAMMMGCSKEGLHTQALQLFAAMRRAGYS---------------RHPLHLLQYSH 458

Query: 209 GQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDME 268
            +   T  L NV +++S++D Y+KC  L D RRL                          
Sbjct: 459 SRSRSTSVL-NVFVNNSLLDFYSKCDCLDDMRRL-------------------------- 491

Query: 269 SASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACA 328
                F+EMPE++ VS+  +IA Y  N      L LF  M  L        +++ L    
Sbjct: 492 -----FDEMPERDNVSYNVIIAAYAWNQCAATVLRLFREMQKLGFDRQVLPYATMLSVAG 546

Query: 329 SIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWN 388
           S+  +  GKQ+H  L+     S  ++ ++LIDMYSKCG L+  +  F    ++++++ W 
Sbjct: 547 SLPDVHIGKQIHAQLVLLGLASEDLLGNALIDMYSKCGMLDAAKSNFS-NRSEKSAISWT 605

Query: 389 TMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHD 448
            +I+   Q+G  E+A++LF DM R+ ++PD+ T + I+ A +   ++  G      +   
Sbjct: 606 ALITGYVQNGQHEEALQLFSDMRRAGLRPDRATFSSIIKASSSLAMIGLGRQLHSYLIRS 665

Query: 449 LGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNAL 493
            G   +    + L+++ A+ GC D+ +   ++MP E +S  WNA+
Sbjct: 666 -GYKSSVFSGSVLVDMYAKCGCLDEALRTFDEMP-ERNSISWNAV 708



 Score =  108 bits (270), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 83/348 (23%), Positives = 154/348 (44%), Gaps = 80/348 (22%)

Query: 88  TFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYA----------------- 130
            F++N L+  Y KC    D R++FD++P ++  SYN +++ YA                 
Sbjct: 469 VFVNNSLLDFYSKCDCLDDMRRLFDEMPERDNVSYNVIIAAYAWNQCAATVLRLFREMQK 528

Query: 131 -----------------------NLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAV- 166
                                  ++G   HA+ +   +A  D++  N +I  Y+K G + 
Sbjct: 529 LGFDRQVLPYATMLSVAGSLPDVHIGKQIHAQLVLLGLASEDLLG-NALIDMYSKCGMLD 587

Query: 167 ------------------------------EEGLKFYKVLRRFSISCNEFSFAGILTICV 196
                                         EE L+ +  +RR  +  +  +F+ I+    
Sbjct: 588 AAKSNFSNRSEKSAISWTALITGYVQNGQHEEALQLFSDMRRAGLRPDRATFSSIIKASS 647

Query: 197 KLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTT 256
            L  + L RQ+H  ++ +G+ S+V   S +VD YAKCG L +A R FDE   R+ ++W  
Sbjct: 648 SLAMIGLGRQLHSYLIRSGYKSSVFSGSVLVDMYAKCGCLDEALRTFDEMPERNSISWNA 707

Query: 257 MVSGYAKLGDMESASKLFNEMPE--KNP--VSWTTLIAGYTRNGLGQKALELFTRMM-IL 311
           ++S YA  G+ ++A K+F  M     NP  V++ +++A  + NGL  + ++ F  M    
Sbjct: 708 VISAYAHYGEAKNAIKMFEGMLHCGFNPDSVTFLSVLAACSHNGLADECMKYFHLMKHQY 767

Query: 312 RIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLI 359
            I P +  ++   C   ++  +    QV   L+   F+++ I+ +S++
Sbjct: 768 SISPWKEHYA---CVIDTLGRVGCFSQVQKMLVEMPFKADPIIWTSIL 812



 Score = 82.4 bits (202), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 68/277 (24%), Positives = 138/277 (49%), Gaps = 16/277 (5%)

Query: 3   SNFSPRGINRKNLPNNCLIQSFLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQC 62
           SNFS R   +  +    LI  +   +  GQ  EA+     + + G+R    T + I++  
Sbjct: 591 SNFSNRS-EKSAISWTALITGY---VQNGQHEEALQLFSDMRRAGLRPDRATFSSIIKAS 646

Query: 63  AESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSY 122
           +    + LG+++H +L  +  K+ + F  + L+ MY KCG   +A + FD++P +N  S+
Sbjct: 647 SSLAMIGLGRQLHSYLIRSGYKS-SVFSGSVLVDMYAKCGCLDEALRTFDEMPERNSISW 705

Query: 123 NNMLSGYANLGMMKHARNLFDNMAE----RDVVSWNTMIIGYAKSGAVEEGLKFYKVLR- 177
           N ++S YA+ G  K+A  +F+ M       D V++ +++   + +G  +E +K++ +++ 
Sbjct: 706 NAVISAYAHYGEAKNAIKMFEGMLHCGFNPDSVTFLSVLAACSHNGLADECMKYFHLMKH 765

Query: 178 RFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELS 237
           ++SIS  +  +A ++     L  +    QV   ++   F ++ +I +SI+ +    G   
Sbjct: 766 QYSISPWKEHYACVIDT---LGRVGCFSQVQKMLVEMPFKADPIIWTSILHSCRIHGNQE 822

Query: 238 DARRLFDE---TDARDVLTWTTMVSGYAKLGDMESAS 271
            AR   D+    +  D   +  + + YA+ G  E A+
Sbjct: 823 LARVAADKLFGMEPTDATPYVILSNIYARAGQWEDAA 859


>gi|357516765|ref|XP_003628671.1| hypothetical protein MTR_8g063290 [Medicago truncatula]
 gi|355522693|gb|AET03147.1| hypothetical protein MTR_8g063290 [Medicago truncatula]
          Length = 659

 Score =  313 bits (803), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 165/509 (32%), Positives = 272/509 (53%), Gaps = 38/509 (7%)

Query: 125 MLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCN 184
           ++  YA  G     R +FD M++R+VV +N MI  Y  +   ++GL  ++ +       +
Sbjct: 59  LMRSYAACGEPGLTRKVFDEMSDRNVVFYNVMIRSYVNNHRYDDGLLVFREMVNGGFRPD 118

Query: 185 EFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFD 244
            +++  +L  C   E L+    +HG VL  G   N+ + + ++  Y KCG L +ARR+FD
Sbjct: 119 NYTYPCVLKACSCSENLRYGLLIHGDVLKVGLDFNLFVGNGLIAMYGKCGCLFEARRVFD 178

Query: 245 ETDARDVLTWTTMVSGYAK----------LGDMES------------------------- 269
           E   +DV++W +MV+GYA             +ME                          
Sbjct: 179 EMIWKDVVSWNSMVAGYAHNMRFDDALEICREMEDYGQKPDGCTMASLMPAVANTSSENV 238

Query: 270 --ASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCAC 327
               K+F  +  KN +SW  +I  Y +N L  +A++L+ +M   R+ P+  TF+S L AC
Sbjct: 239 LYVEKIFVNLERKNLISWNVMIRVYMKNSLPTQAVDLYLQMEKCRVEPDAITFASVLPAC 298

Query: 328 ASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLW 387
             + +L  G+++H ++ +     N ++ +SLIDMY++CGCL+D ++VFD    ++ +  W
Sbjct: 299 GDLSALLLGRRIHEYVEKKKLCPNLLLENSLIDMYARCGCLDDAKRVFDRMKFRDVAS-W 357

Query: 388 NTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTH 447
            ++ISA    G    A+ LF +M+ S   PD I    IL+AC+HSGL+ EG  YF+ MT 
Sbjct: 358 TSLISAYGMTGQGCNAVALFTEMLNSGQAPDSIAFVAILSACSHSGLLDEGRIYFKQMTD 417

Query: 448 DLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGR 507
           D  I P  EH+ACL++LL +AG  D+  N +++MP E +  +W  L   CR+  N+D+G 
Sbjct: 418 DYRITPRIEHYACLVDLLGRAGRVDEAYNIIKQMPIEPNERVWATLLSSCRVFTNMDIGI 477

Query: 508 KVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKV 567
              D L+   P+ S  + LLS+IY+  G+ + V ++R ++  ++ +K   IS +E+ N+V
Sbjct: 478 LAADNLLQLAPEQSGYYVLLSNIYAKAGRWKEVTEIRSVMKRKKIRKTPGISNVELNNQV 537

Query: 568 HAFSVSDSLHPMRDVLYSVLEQLAGQMGE 596
           H F   D+ HP    +Y  L  L  +M E
Sbjct: 538 HTFLAGDTSHPQSKEIYEELGVLVAKMKE 566



 Score = 70.5 bits (171), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 49/171 (28%), Positives = 90/171 (52%), Gaps = 11/171 (6%)

Query: 10  INRKNLPN-NCLIQSFLSLISKGQLSEAISSLDLLAQRGIRLP-AETLAFILQQCAESKS 67
           + RKNL + N +I+ ++    K  L      L L  ++    P A T A +L  C +  +
Sbjct: 248 LERKNLISWNVMIRVYM----KNSLPTQAVDLYLQMEKCRVEPDAITFASVLPACGDLSA 303

Query: 68  LKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLS 127
           L LG+R+H +++  ++  P   L N LI MY +CG   DA++VFD++  +++ S+ +++S
Sbjct: 304 LLLGRRIHEYVE-KKKLCPNLLLENSLIDMYARCGCLDDAKRVFDRMKFRDVASWTSLIS 362

Query: 128 GYANLGMMKHARNLFDNMAER----DVVSWNTMIIGYAKSGAVEEGLKFYK 174
            Y   G   +A  LF  M       D +++  ++   + SG ++EG  ++K
Sbjct: 363 AYGMTGQGCNAVALFTEMLNSGQAPDSIAFVAILSACSHSGLLDEGRIYFK 413


>gi|297844718|ref|XP_002890240.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297336082|gb|EFH66499.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 763

 Score =  313 bits (803), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 176/589 (29%), Positives = 312/589 (52%), Gaps = 14/589 (2%)

Query: 28  ISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPT 87
           +S G    A      + +RG+      L  IL+ C       L +  H  +     K   
Sbjct: 134 VSHGLYENAFELYRGMRERGLTGDGFILPLILRACRYLGRFGLCRAFHSQVIQIGLK-EN 192

Query: 88  TFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAE 147
             ++N L+++Y K     DA  +F ++PV+N  S+N M+ G++     + A  +F+ M  
Sbjct: 193 LHVANELLTLYPKAARIGDAYNLFVEMPVRNRMSWNVMIKGFSQEFDCESAVKIFEWMQR 252

Query: 148 RDV----VSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKL 203
            D     V+W +++  +++ G  E+ +K++ V+R  + + +  + A   ++C +L  L +
Sbjct: 253 EDFKPDEVTWTSLLSCHSQCGKFEDVIKYFHVMRMSASAVSGEALAVFFSVCAELGALSI 312

Query: 204 TRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAK 263
             +VHG V+  GF   +   ++++  Y K G++ DA +LF +   + + +W ++++ +  
Sbjct: 313 ADKVHGFVIKGGFEECLPSRNALIHVYGKQGKVKDAEQLFRQIRNKGIESWNSLITSFVD 372

Query: 264 LGDMESASKLFNEMPE--------KNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRP 315
            G ++ A  LF E+ E         N V+WT++I G    G G  +LE F RM   ++  
Sbjct: 373 AGKLDEALSLFTELEEMDDVCNVKANVVTWTSVIKGCNVQGRGDYSLEYFRRMQFSKVLS 432

Query: 316 NQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVF 375
           N  T    L  CA + +L  G+++HG +IRT+   N +V ++L++MY+KCG L +G  VF
Sbjct: 433 NSVTICCILSICAELPALNLGREIHGHVIRTSMSDNILVQNALVNMYTKCGLLREGSLVF 492

Query: 376 DLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLV 435
           +   +K+  + WN++I     HG+ E+A+ +F  M++S   PD I L  +L+AC+H+GLV
Sbjct: 493 EAIRDKD-LISWNSIIKGYGMHGFGEKALSMFDRMIKSGCHPDGIALVAVLSACSHAGLV 551

Query: 436 QEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHG 495
           ++G   F SM+   G+ P QEH+AC+++LL + G   +    ++ MP E    +  AL  
Sbjct: 552 EKGRKIFYSMSKRFGLEPQQEHYACIVDLLGRVGFLKEASEIVKNMPMEPKVCVLGALLN 611

Query: 496 VCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKE 555
            CR+H N+D+   +  QL    P+ + ++ LLS+IYSA G+     KVR L  ++  KK 
Sbjct: 612 SCRMHKNMDIAEIIASQLRVLEPERTGSYMLLSNIYSAGGRWEESAKVRALAKKKDLKKV 671

Query: 556 QAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQMGEDAPSLDAD 604
              SWIE++ K++ FS    +      +Y VLE L   M ++ P+ D +
Sbjct: 672 SGSSWIELKKKIYKFSSGSIVQSEFASIYPVLEDLVSHMVKEGPTHDGN 720



 Score =  145 bits (365), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 91/355 (25%), Positives = 170/355 (47%), Gaps = 13/355 (3%)

Query: 124 NMLSGYANLGMMKHARNLFDNMA---ERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFS 180
           N +S Y+ LG++  ARN+F+ ++     D+  WN+++      G  E   + Y+ +R   
Sbjct: 94  NFVSVYSRLGLLLDARNVFETVSLVLWSDLRLWNSILKANVSHGLYENAFELYRGMRERG 153

Query: 181 ISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDAR 240
           ++ + F    IL  C  L    L R  H QV+  G   N+ +++ ++  Y K   + DA 
Sbjct: 154 LTGDGFILPLILRACRYLGRFGLCRAFHSQVIQIGLKENLHVANELLTLYPKAARIGDAY 213

Query: 241 RLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEK----NPVSWTTLIAGYTRNG 296
            LF E   R+ ++W  M+ G+++  D ESA K+F  M  +    + V+WT+L++ +++ G
Sbjct: 214 NLFVEMPVRNRMSWNVMIKGFSQEFDCESAVKIFEWMQREDFKPDEVTWTSLLSCHSQCG 273

Query: 297 LGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMS 356
             +  ++ F  M +     +    +     CA + +L    +VHGF+I+  F       +
Sbjct: 274 KFEDVIKYFHVMRMSASAVSGEALAVFFSVCAELGALSIADKVHGFVIKGGFEECLPSRN 333

Query: 357 SLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVR---- 412
           +LI +Y K G + D  Q+F    NK     WN++I++    G  ++A+ LF ++      
Sbjct: 334 ALIHVYGKQGKVKDAEQLFRQIRNKGIES-WNSLITSFVDAGKLDEALSLFTELEEMDDV 392

Query: 413 SSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQ 467
            +VK + +T   ++  C   G     L YF  M     ++ N     C++ + A+
Sbjct: 393 CNVKANVVTWTSVIKGCNVQGRGDYSLEYFRRMQFS-KVLSNSVTICCILSICAE 446


>gi|356498444|ref|XP_003518062.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g13770, mitochondrial-like [Glycine max]
          Length = 634

 Score =  313 bits (802), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 170/556 (30%), Positives = 294/556 (52%), Gaps = 66/556 (11%)

Query: 43  LAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCG 102
           +A RG+    +    +L +C   ++++ G+RVH H+  T    P  +L   LI  Y KC 
Sbjct: 49  MALRGLDTNFQDYNTVLNECLRKRAIREGQRVHAHMIKTH-YLPCVYLRTRLIVFYVKCD 107

Query: 103 SDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAK 162
           S                               ++ AR++FD M ER+VVSW  MI  Y++
Sbjct: 108 S-------------------------------LRDARHVFDVMPERNVVSWTAMISAYSQ 136

Query: 163 SGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVI 222
            G   + L  +  + R     NEF+FA +LT C+      L RQ+H  ++   + ++V +
Sbjct: 137 RGYASQALSLFVQMLRSGTEPNEFTFATVLTSCIGSSGFVLGRQIHSHIIKLNYEAHVYV 196

Query: 223 SSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNP 282
            SS++D YAK G++ +                               A  +F  +PE++ 
Sbjct: 197 GSSLLDMYAKDGKIHE-------------------------------ARGIFQCLPERDV 225

Query: 283 VSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGF 342
           VS T +I+GY + GL ++ALELF R+    ++ N  T++S L A + + +L HGKQVH  
Sbjct: 226 VSCTAIISGYAQLGLDEEALELFRRLQREGMQSNYVTYTSVLTALSGLAALDHGKQVHNH 285

Query: 343 LIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQ 402
           L+R+   S  ++ +SLIDMYSKCG L   R++FD T ++   + WN M+   ++HG   +
Sbjct: 286 LLRSEVPSYVVLQNSLIDMYSKCGNLTYARRIFD-TLHERTVISWNAMLVGYSKHGEGRE 344

Query: 403 AIRLFHDMV-RSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTH-DLGIIPNQEHHAC 460
            + LF+ M+  + VKPD +T+  +L+ C+H GL  +G+  F  MT   + + P+ +H+ C
Sbjct: 345 VLELFNLMIDENKVKPDSVTVLAVLSGCSHGGLEDKGMDIFYDMTSGKISVQPDSKHYGC 404

Query: 461 LIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQS 520
           ++++L +AG  +     ++KMP+E  + +W  L G C +H N+D+G  V  QL+   P++
Sbjct: 405 VVDMLGRAGRVEAAFEFVKKMPFEPSAAIWGCLLGACSVHSNLDIGEFVGHQLLQIEPEN 464

Query: 521 SATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMR 580
           +  + +LS++Y++ G+   V  +R L+ ++   KE   SWIE++  +H F  SD  HP R
Sbjct: 465 AGNYVILSNLYASAGRWEDVRSLRNLMLKKAVTKEPGRSWIELDQVLHTFHASDCSHPRR 524

Query: 581 DVLYSVLEQLAGQMGE 596
           + + + +++L+ +  E
Sbjct: 525 EEVSAKVQELSARFKE 540



 Score =  132 bits (332), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 88/297 (29%), Positives = 149/297 (50%), Gaps = 41/297 (13%)

Query: 21  IQSFLSLIS----KGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHL 76
           + S+ ++IS    +G  S+A+S    + + G      T A +L  C  S    LG+++H 
Sbjct: 124 VVSWTAMISAYSQRGYASQALSLFVQMLRSGTEPNEFTFATVLTSCIGSSGFVLGRQIH- 182

Query: 77  HLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMK 136
                          +H+I + ++                 +++  +++L  YA  G + 
Sbjct: 183 ---------------SHIIKLNYEA----------------HVYVGSSLLDMYAKDGKIH 211

Query: 137 HARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICV 196
            AR +F  + ERDVVS   +I GYA+ G  EE L+ ++ L+R  +  N  ++  +LT   
Sbjct: 212 EARGIFQCLPERDVVSCTAIISGYAQLGLDEEALELFRRLQREGMQSNYVTYTSVLTALS 271

Query: 197 KLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTT 256
            L  L   +QVH  +L +   S VV+ +S++D Y+KCG L+ ARR+FD    R V++W  
Sbjct: 272 GLAALDHGKQVHNHLLRSEVPSYVVLQNSLIDMYSKCGNLTYARRIFDTLHERTVISWNA 331

Query: 257 MVSGYAKLGDMESASKLFNEMPEKN---PVSWTTL--IAGYTRNGLGQKALELFTRM 308
           M+ GY+K G+     +LFN M ++N   P S T L  ++G +  GL  K +++F  M
Sbjct: 332 MLVGYSKHGEGREVLELFNLMIDENKVKPDSVTVLAVLSGCSHGGLEDKGMDIFYDM 388



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 77/296 (26%), Positives = 131/296 (44%), Gaps = 48/296 (16%)

Query: 303 ELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMY 362
           E    M +  +  N   +++ L  C    +++ G++VH  +I+T++     + + LI  Y
Sbjct: 44  EALLHMALRGLDTNFQDYNTVLNECLRKRAIREGQRVHAHMIKTHYLPCVYLRTRLIVFY 103

Query: 363 SKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITL 422
            KC  L D R VFD+   + N + W  MISA +Q GY  QA+ LF  M+RS  +P++ T 
Sbjct: 104 VKCDSLRDARHVFDVMPER-NVVSWTAMISAYSQRGYASQALSLFVQMLRSGTEPNEFTF 162

Query: 423 AVILNAC-----------THSGLVQ---EGLTYFESMTHDL-----------GI---IPN 454
           A +L +C            HS +++   E   Y  S   D+           GI   +P 
Sbjct: 163 ATVLTSCIGSSGFVLGRQIHSHIIKLNYEAHVYVGSSLLDMYAKDGKIHEARGIFQCLPE 222

Query: 455 QEHHAC--LIELLAQAGCSDQLMN-----QLEKMPYEHDSY--LWNALHGVCRIHGNIDM 505
           ++  +C  +I   AQ G  ++ +      Q E M   + +Y  +  AL G+      +D 
Sbjct: 223 RDVVSCTAIISGYAQLGLDEEALELFRRLQREGMQSNYVTYTSVLTALSGL----AALDH 278

Query: 506 GRKVVDQLI-DQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISW 560
           G++V + L+  + P        L  +YS  G      ++   ++ER       ISW
Sbjct: 279 GKQVHNHLLRSEVPSYVVLQNSLIDMYSKCGNLTYARRIFDTLHER-----TVISW 329


>gi|297740136|emb|CBI30318.3| unnamed protein product [Vitis vinifera]
          Length = 861

 Score =  313 bits (802), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 165/510 (32%), Positives = 282/510 (55%), Gaps = 15/510 (2%)

Query: 94  LISMYFKC---GSDVDARKVFDKIPVK----NLFSYNNMLSGYANLGMMKHARNLFDNMA 146
           ++++ F C   G+   AR + D I  K    ++     M+  YA  G ++ AR +FD M 
Sbjct: 262 MVTVVFACAKLGAMHKARIIDDYIQRKKFQLDVILGTAMIDMYAKCGCVESAREIFDRME 321

Query: 147 ERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQ 206
           E++V+SW+ MI  Y   G   + L  ++++    +  ++ + A +L  C+    L   RQ
Sbjct: 322 EKNVISWSAMIAAYGYHGQGRKALDLFRMMLSSGMLPDKITLASLLYACINCRNLTQVRQ 381

Query: 207 VHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGD 266
           VH Q  V G L N+++++ +V  Y+    L DA  LFD    RD ++W+ MV G+AK+GD
Sbjct: 382 VHAQASVHGMLQNLIVANKLVHFYSYYRALDDAYGLFDGMCVRDSVSWSVMVGGFAKVGD 441

Query: 267 MESASKLFNEMPE--KNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCL 324
             +    F E+      P ++T    G        ++L LF +M    + P++    + +
Sbjct: 442 YMNCFGTFRELIRCGARPDNYTLPFCGNA-----NESLVLFDKMREEGVVPDKVAMVTVV 496

Query: 325 CACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENS 384
            ACA + ++   + +  ++ R  F+ + I+ +++IDM++KCGC+   R++FD  + K N 
Sbjct: 497 FACAKLGAMHKARTIDDYIQRKKFQLDVILGTAMIDMHAKCGCVESAREIFDRMEEK-NV 555

Query: 385 MLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFES 444
           + W+ MI+A   HG   +A+ LF  M+RS + P+KITL  +L AC+H+GLV+EGL +F  
Sbjct: 556 ISWSAMIAAYGYHGQGRKALDLFPMMLRSGILPNKITLVSLLYACSHAGLVEEGLRFFSL 615

Query: 445 MTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNID 504
           M  D  +  + +H+ C+++LL +AG  D+ +  +E M  E D  LW A  G CR H ++ 
Sbjct: 616 MWEDYSVRADVKHYTCVVDLLGRAGRLDEALKLIESMTVEKDEGLWGAFLGACRTHKDVV 675

Query: 505 MGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIE 564
           +  K    L++  PQ+   + LLS+IY+  G+   V K R L+++R+ KK    +WIE++
Sbjct: 676 LAEKAATSLLELQPQNPGHYILLSNIYANAGRWEDVAKTRDLMSQRRLKKIPGWTWIEVD 735

Query: 565 NKVHAFSVSDSLHPMRDVLYSVLEQLAGQM 594
           NK H FSV D+ HP    +Y +L+ L  ++
Sbjct: 736 NKSHQFSVGDTTHPRSKEIYEMLKSLGNKL 765



 Score =  159 bits (403), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 100/352 (28%), Positives = 164/352 (46%), Gaps = 62/352 (17%)

Query: 82  QRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPV----KNLFSYNNMLSGYANLGMMKH 137
           QR  P  +     IS    C +    R+V  +  V    +N+   N ++  Y+    +  
Sbjct: 77  QRLNPKFY-----ISALVNCRNLTQVRQVHAQASVHGMLENIVVANKLIYFYSYYRALDD 131

Query: 138 ARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVK 197
           A  LFD M  RD VSW+ M+ G+AK G        ++ L R     + ++   ++  C  
Sbjct: 132 AYGLFDGMCVRDSVSWSVMVGGFAKVGDYINCFGTFRELIRCGARPDNYTLPFVIRACRD 191

Query: 198 LEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTM 257
           L+ L++                     ++VD Y KC E+ DAR LFD+   RD++TWT M
Sbjct: 192 LKNLQM---------------------ALVDMYVKCREIEDARFLFDKMQERDLVTWTVM 230

Query: 258 VSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQ 317
           + GYA+ G    +  LF +M E+  V                               P++
Sbjct: 231 IGGYAECGKANESLVLFEKMREEGVV-------------------------------PDK 259

Query: 318 HTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDL 377
               + + ACA + ++   + +  ++ R  F+ + I+ +++IDMY+KCGC+   R++FD 
Sbjct: 260 VAMVTVVFACAKLGAMHKARIIDDYIQRKKFQLDVILGTAMIDMYAKCGCVESAREIFDR 319

Query: 378 TDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNAC 429
            + K N + W+ MI+A   HG   +A+ LF  M+ S + PDKITLA +L AC
Sbjct: 320 MEEK-NVISWSAMIAAYGYHGQGRKALDLFRMMLSSGMLPDKITLASLLYAC 370



 Score =  149 bits (375), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 118/504 (23%), Positives = 219/504 (43%), Gaps = 101/504 (20%)

Query: 90  LSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLG---------------- 133
           ++N LI  Y    +  DA  +FD + V++  S++ M+ G+A +G                
Sbjct: 115 VANKLIYFYSYYRALDDAYGLFDGMCVRDSVSWSVMVGGFAKVGDYINCFGTFRELIRCG 174

Query: 134 ---------------------------------MMKHARNLFDNMAERDVVSWNTMIIGY 160
                                             ++ AR LFD M ERD+V+W  MI GY
Sbjct: 175 ARPDNYTLPFVIRACRDLKNLQMALVDMYVKCREIEDARFLFDKMQERDLVTWTVMIGGY 234

Query: 161 AKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNV 220
           A+ G   E L  ++ +R   +  ++ +   ++  C KL  +   R +   +    F  +V
Sbjct: 235 AECGKANESLVLFEKMREEGVVPDKVAMVTVVFACAKLGAMHKARIIDDYIQRKKFQLDV 294

Query: 221 VISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEK 280
           ++ ++++D YAKCG +  AR +FD  + ++V++W+ M++ Y                   
Sbjct: 295 ILGTAMIDMYAKCGCVESAREIFDRMEEKNVISWSAMIAAY------------------- 335

Query: 281 NPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVH 340
                     GY  +G G+KAL+LF  M+   + P++ T +S L AC +  +L   +QVH
Sbjct: 336 ----------GY--HGQGRKALDLFRMMLSSGMLPDKITLASLLYACINCRNLTQVRQVH 383

Query: 341 GFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYD 400
                     N IV + L+  YS    L+D   +FD    ++ S+ W+ M+    + G  
Sbjct: 384 AQASVHGMLQNLIVANKLVHFYSYYRALDDAYGLFDGMCVRD-SVSWSVMVGGFAKVGDY 442

Query: 401 EQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHAC 460
                 F +++R   +PD  TL    NA        E L  F+ M  + G++P++     
Sbjct: 443 MNCFGTFRELIRCGARPDNYTLPFCGNA-------NESLVLFDKMREE-GVVPDKVAMVT 494

Query: 461 LIELLAQAGC---SDQLMNQLEKMPYEHDSYLWNA---LHGVCRIHGNIDMGRKVVDQLI 514
           ++   A+ G    +  + + +++  ++ D  L  A   +H  C   G ++  R++ D++ 
Sbjct: 495 VVFACAKLGAMHKARTIDDYIQRKKFQLDVILGTAMIDMHAKC---GCVESAREIFDRME 551

Query: 515 DQNPQSSATHGLLSSIYSALGKGR 538
           ++N  S +    + + Y   G+GR
Sbjct: 552 EKNVISWSA---MIAAYGYHGQGR 572



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 78/370 (21%), Positives = 162/370 (43%), Gaps = 40/370 (10%)

Query: 31  GQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFL 90
           GQ  +A+    ++   G+     TLA +L  C   ++L   ++VH    +         +
Sbjct: 339 GQGRKALDLFRMMLSSGMLPDKITLASLLYACINCRNLTQVRQVHAQASV-HGMLQNLIV 397

Query: 91  SNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDV 150
           +N L+  Y    +  DA  +FD + V++  S++ M+ G+A +G   +    F     R++
Sbjct: 398 ANKLVHFYSYYRALDDAYGLFDGMCVRDSVSWSVMVGGFAKVGDYMNCFGTF-----REL 452

Query: 151 VSWNTMIIGYAKS--GAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVH 208
           +        Y     G   E L  +  +R   +  ++ +   ++  C KL  +   R + 
Sbjct: 453 IRCGARPDNYTLPFCGNANESLVLFDKMREEGVVPDKVAMVTVVFACAKLGAMHKARTID 512

Query: 209 GQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDME 268
             +    F  +V++ ++++D +AKCG +  AR +FD  + ++V++W+ M++ Y       
Sbjct: 513 DYIQRKKFQLDVILGTAMIDMHAKCGCVESAREIFDRMEEKNVISWSAMIAAY------- 565

Query: 269 SASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACA 328
                                 GY  +G G+KAL+LF  M+   I PN+ T  S L AC+
Sbjct: 566 ----------------------GY--HGQGRKALDLFPMMLRSGILPNKITLVSLLYACS 601

Query: 329 SIVSLKHGKQVHGFLIRT-NFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLW 387
               ++ G +    +    + R++    + ++D+  + G L++  ++ +    +++  LW
Sbjct: 602 HAGLVEEGLRFFSLMWEDYSVRADVKHYTCVVDLLGRAGRLDEALKLIESMTVEKDEGLW 661

Query: 388 NTMISALTQH 397
              + A   H
Sbjct: 662 GAFLGACRTH 671



 Score = 92.4 bits (228), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 74/319 (23%), Positives = 124/319 (38%), Gaps = 64/319 (20%)

Query: 196 VKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWT 255
           V    L   RQVH Q  V G L N+V+++ ++  Y+    L DA  LFD    RD     
Sbjct: 89  VNCRNLTQVRQVHAQASVHGMLENIVVANKLIYFYSYYRALDDAYGLFDGMCVRD----- 143

Query: 256 TMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRP 315
                                      VSW+ ++ G+ + G        F  ++    RP
Sbjct: 144 --------------------------SVSWSVMVGGFAKVGDYINCFGTFRELIRCGARP 177

Query: 316 NQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVF 375
           + +T    + AC  + +L+                      +L+DMY KC  + D R +F
Sbjct: 178 DNYTLPFVIRACRDLKNLQ---------------------MALVDMYVKCREIEDARFLF 216

Query: 376 DLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLV 435
           D    ++  + W  MI    + G   +++ LF  M    V PDK+ +  ++ AC   G +
Sbjct: 217 DKMQERD-LVTWTVMIGGYAECGKANESLVLFEKMREEGVVPDKVAMVTVVFACAKLGAM 275

Query: 436 QEGLT---YFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNA 492
            +      Y +     L +I        +I++ A+ GC +      ++M  E +   W+A
Sbjct: 276 HKARIIDDYIQRKKFQLDVILG----TAMIDMYAKCGCVESAREIFDRME-EKNVISWSA 330

Query: 493 LHGVCRIHGNIDMGRKVVD 511
           +      HG    GRK +D
Sbjct: 331 MIAAYGYHGQ---GRKALD 346


>gi|147766033|emb|CAN70212.1| hypothetical protein VITISV_038740 [Vitis vinifera]
          Length = 724

 Score =  313 bits (802), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 174/562 (30%), Positives = 290/562 (51%), Gaps = 66/562 (11%)

Query: 36  AISSLDLLAQRGIRLPAETL-AFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHL 94
            + +LDL+ QRG  +P   L + +L++C     ++ G+ VH HL        + FL NHL
Sbjct: 71  GLYALDLI-QRGSLVPDYNLYSKLLKECTRLGKVEQGRIVHAHL------VDSHFLDNHL 123

Query: 95  ISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWN 154
           +                           N +++ YA  G +  AR +FD M  +D+V+W 
Sbjct: 124 VLQ-------------------------NIIVNMYAKCGCLDDARRMFDEMPTKDMVTWT 158

Query: 155 TMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVT 214
            +I G++++    + L  +  + R  +  N F+ + +L        L    Q+H   L  
Sbjct: 159 ALIAGFSQNNRPRDALLLFPQMLRLGLQPNHFTLSSLLKASGSEHGLDPGTQLHAFCLKY 218

Query: 215 GFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLF 274
           G+ S+V + S++VD YA+CG                                M++A   F
Sbjct: 219 GYQSSVYVGSALVDMYARCGH-------------------------------MDAAQLAF 247

Query: 275 NEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLK 334
           + MP K+ VSW  LI+G+ R G G+ AL L  +M     +P   T+SS   ACASI +L+
Sbjct: 248 DGMPTKSEVSWNALISGHARKGEGEHALHLLWKMQRKNFQPTHFTYSSVFSACASIGALE 307

Query: 335 HGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISAL 394
            GK VH  +I++  +    + ++L+DMY+K G ++D ++VFD    K + + WNTM++  
Sbjct: 308 QGKWVHAHMIKSGLKLIAFIGNTLLDMYAKAGSIDDAKRVFDRL-VKPDVVSWNTMLTGC 366

Query: 395 TQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPN 454
            QHG  ++ +  F  M+R  ++P++I+   +L AC+HSGL+ EGL YFE M     + P+
Sbjct: 367 AQHGLGKETLDRFEQMLRIGIEPNEISFLCVLTACSHSGLLDEGLYYFELMK-KYKVEPD 425

Query: 455 QEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLI 514
             H+   ++LL + G  D+    + +MP E  + +W AL G CR+H N+++G    ++  
Sbjct: 426 VPHYVTFVDLLGRVGLLDRAERFIREMPIEPTAAVWGALLGACRMHKNMELGVYAAERAF 485

Query: 515 DQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSD 574
           + +P  S    LLS+IY++ G+ R V KVR+++ E   KK+ A SW+EIEN VH F  +D
Sbjct: 486 ELDPHDSGPRMLLSNIYASAGRWRDVAKVRKMMKESGVKKQPACSWVEIENAVHLFVAND 545

Query: 575 SLHPMRDVLYSVLEQLAGQMGE 596
             HP    +    E+++G++ E
Sbjct: 546 ETHPQIKEIRGKWEEISGKIKE 567



 Score = 75.5 bits (184), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 48/167 (28%), Positives = 92/167 (55%), Gaps = 9/167 (5%)

Query: 23  SFLSLIS----KGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHL 78
           S+ +LIS    KG+   A+  L  + ++  +    T + +   CA   +L+ GK VH H+
Sbjct: 257 SWNALISGHARKGEGEHALHLLWKMQRKNFQPTHFTYSSVFSACASIGALEQGKWVHAHM 316

Query: 79  KLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHA 138
             +  K    F+ N L+ MY K GS  DA++VFD++   ++ S+N ML+G A  G+ K  
Sbjct: 317 IKSGLKL-IAFIGNTLLDMYAKAGSIDDAKRVFDRLVKPDVVSWNTMLTGCAQHGLGKET 375

Query: 139 RNLFDNM----AERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSI 181
            + F+ M     E + +S+  ++   + SG ++EGL ++++++++ +
Sbjct: 376 LDRFEQMLRIGIEPNEISFLCVLTACSHSGLLDEGLYYFELMKKYKV 422


>gi|413919600|gb|AFW59532.1| hypothetical protein ZEAMMB73_249815 [Zea mays]
          Length = 886

 Score =  313 bits (801), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 174/547 (31%), Positives = 297/547 (54%), Gaps = 31/547 (5%)

Query: 58  ILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVK 117
           IL  CA  K+L   K +H +  +        F+ N LI  Y KCGS  DA KVF+ +  K
Sbjct: 265 ILPACASLKALPQIKEIHSY-AIRNGTFADAFVCNALIDTYAKCGSMNDAVKVFNVMEFK 323

Query: 118 NLFSYNNMLSGYANLGMMKHARNLFDNMAER----DVVSWNTMIIGYAKSGAVEEGLKFY 173
           ++ S+N M++GY   G    A  LF+NM +     DV++W+ +I GYA+ G  +E L  +
Sbjct: 324 DVVSWNAMVTGYTQSGNFGAAFELFENMRKENIPLDVITWSAVIAGYAQRGCSQEALDAF 383

Query: 174 KVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKC 233
           + +       N  +   +L+ C  L  L    ++H   L                   KC
Sbjct: 384 QQMILDGSEPNSVTIISLLSACASLGALSQGMEIHAYSL------------------KKC 425

Query: 234 GELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMP--EKNPVSWTTLIAG 291
             LS       + D  D++ +  ++  Y+K    ++A  +F+ +P  E+N V+WT +I G
Sbjct: 426 -LLSLDNDFGGDGDGEDLMVYNALIDMYSKCRSFKAARSIFDSIPRRERNVVTWTVMIGG 484

Query: 292 YTRNGLGQKALELFTRMM--ILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFR 349
           Y + G    AL++F+ M+     + PN +T S  L ACA + +L+ GKQ+H ++ R +  
Sbjct: 485 YAQYGDSNDALKIFSEMISKPYAVAPNAYTISCILMACAHLAALRMGKQIHAYVTRHHEY 544

Query: 350 SNTI--VMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLF 407
             ++  V + LIDMYSKCG ++  R VFD +  K N + W +M+S    HG  ++A+ +F
Sbjct: 545 EPSVYFVANCLIDMYSKCGDVDTARNVFD-SMPKRNEVSWTSMMSGYGMHGRGKEALDIF 603

Query: 408 HDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQ 467
             M ++   PD I+  V+L AC+HSG+V +GL YF+ M  D  ++ + EH+AC+I+LLA+
Sbjct: 604 DKMQKAGFVPDDISFLVLLYACSHSGMVDQGLNYFDIMRRDYDVVASAEHYACVIDLLAR 663

Query: 468 AGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLL 527
            G  D+    +++MP E  + +W AL   CR+H N+++    +++L++   ++  ++ L+
Sbjct: 664 CGRLDKAWKTIQEMPMEPSAVIWVALLSACRVHSNVELAEYALNKLVNMKAENDGSYTLI 723

Query: 528 SSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVL 587
           S+IY+   + + V ++RQL+ +   KK    SW++ +    +F V D  HP+   +YS+L
Sbjct: 724 SNIYANARRWKDVARIRQLMKKSGIKKRPGCSWVQGKKGTASFFVGDRSHPLSPEIYSLL 783

Query: 588 EQLAGQM 594
           E+L G++
Sbjct: 784 ERLIGRI 790



 Score =  202 bits (515), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 134/515 (26%), Positives = 239/515 (46%), Gaps = 62/515 (12%)

Query: 28  ISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPT 87
           I +G L  AI     + + G +    TL + L+ C E  S   G+ +H  L         
Sbjct: 125 IKEGHLDRAIGVSCRMLRAGTKPDHFTLPYALKACGELPSYCCGRALH-GLICCNGFESN 183

Query: 88  TFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAE 147
            F+ N L++MY +C                               G ++ A  +FD +  
Sbjct: 184 VFVCNALVAMYSRC-------------------------------GSLEDASLVFDEITR 212

Query: 148 R---DVVSWNTMIIGYAKSGAVEEGLKFYKVLRRF--SISCNE----FSFAGILTICVKL 198
           +   DV+SWN+++  + K       L+ +  +       + NE     S   IL  C  L
Sbjct: 213 KGIDDVISWNSIVAAHVKGSNPRTALELFSEMSMIVHEKATNERSDIISIVNILPACASL 272

Query: 199 EELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMV 258
           + L   +++H   +  G  ++  + ++++D YAKCG ++DA ++F+  + +DV++W  MV
Sbjct: 273 KALPQIKEIHSYAIRNGTFADAFVCNALIDTYAKCGSMNDAVKVFNVMEFKDVVSWNAMV 332

Query: 259 SGYAKLGDMESASKLFNEMPEKN----PVSWTTLIAGYTRNGLGQKALELFTRMMILRIR 314
           +GY + G+  +A +LF  M ++N     ++W+ +IAGY + G  Q+AL+ F +M++    
Sbjct: 333 TGYTQSGNFGAAFELFENMRKENIPLDVITWSAVIAGYAQRGCSQEALDAFQQMILDGSE 392

Query: 315 PNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRS------------NTIVMSSLIDMY 362
           PN  T  S L ACAS+ +L  G ++H + ++    S            + +V ++LIDMY
Sbjct: 393 PNSVTIISLLSACASLGALSQGMEIHAYSLKKCLLSLDNDFGGDGDGEDLMVYNALIDMY 452

Query: 363 SKCGCLNDGRQVFDLTDNKE-NSMLWNTMISALTQHGYDEQAIRLFHDMVRS--SVKPDK 419
           SKC      R +FD    +E N + W  MI    Q+G    A+++F +M+    +V P+ 
Sbjct: 453 SKCRSFKAARSIFDSIPRRERNVVTWTVMIGGYAQYGDSNDALKIFSEMISKPYAVAPNA 512

Query: 420 ITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHA-CLIELLAQAGCSDQLMNQL 478
            T++ IL AC H   ++ G      +T      P+    A CLI++ ++ G  D   N  
Sbjct: 513 YTISCILMACAHLAALRMGKQIHAYVTRHHEYEPSVYFVANCLIDMYSKCGDVDTARNVF 572

Query: 479 EKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQL 513
           + MP + +   W ++     +HG       + D++
Sbjct: 573 DSMP-KRNEVSWTSMMSGYGMHGRGKEALDIFDKM 606



 Score =  145 bits (365), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 98/355 (27%), Positives = 171/355 (48%), Gaps = 32/355 (9%)

Query: 125 MLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCN 184
           +++ Y   G  K A ++ + +     V WN ++  + K G ++  +     + R     +
Sbjct: 89  VVASYLACGATKDALSVLERVTPSPAVWWNLLVREHIKEGHLDRAIGVSCRMLRAGTKPD 148

Query: 185 EFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFD 244
            F+    L  C +L      R +HG +   GF SNV + +++V  Y++CG L DA  +FD
Sbjct: 149 HFTLPYALKACGELPSYCCGRALHGLICCNGFESNVFVCNALVAMYSRCGSLEDASLVFD 208

Query: 245 ETDAR---DVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKA 301
           E   +   DV++W ++V+ + K  +  +A +LF+EM         ++I       + +KA
Sbjct: 209 EITRKGIDDVISWNSIVAAHVKGSNPRTALELFSEM---------SMI-------VHEKA 252

Query: 302 LELFTRMM-ILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLID 360
               + ++ I+ I P          ACAS+ +L   K++H + IR    ++  V ++LID
Sbjct: 253 TNERSDIISIVNILP----------ACASLKALPQIKEIHSYAIRNGTFADAFVCNALID 302

Query: 361 MYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKI 420
            Y+KCG +ND  +VF++ + K+  + WN M++  TQ G    A  LF +M + ++  D I
Sbjct: 303 TYAKCGSMNDAVKVFNVMEFKD-VVSWNAMVTGYTQSGNFGAAFELFENMRKENIPLDVI 361

Query: 421 TLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLM 475
           T + ++      G  QE L  F+ M  D G  PN      L+   A  G   Q M
Sbjct: 362 TWSAVIAGYAQRGCSQEALDAFQQMILD-GSEPNSVTIISLLSACASLGALSQGM 415



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 50/133 (37%), Positives = 81/133 (60%), Gaps = 7/133 (5%)

Query: 52  AETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTT-FLSNHLISMYFKCGSDVD-ARK 109
           A T++ IL  CA   +L++GK++H ++       P+  F++N LI MY KCG DVD AR 
Sbjct: 512 AYTISCILMACAHLAALRMGKQIHAYVTRHHEYEPSVYFVANCLIDMYSKCG-DVDTARN 570

Query: 110 VFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAER----DVVSWNTMIIGYAKSGA 165
           VFD +P +N  S+ +M+SGY   G  K A ++FD M +     D +S+  ++   + SG 
Sbjct: 571 VFDSMPKRNEVSWTSMMSGYGMHGRGKEALDIFDKMQKAGFVPDDISFLVLLYACSHSGM 630

Query: 166 VEEGLKFYKVLRR 178
           V++GL ++ ++RR
Sbjct: 631 VDQGLNYFDIMRR 643



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 61/247 (24%), Positives = 109/247 (44%), Gaps = 10/247 (4%)

Query: 255 TTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIR 314
           T +V+ Y   G  + A  +   +     V W  L+  + + G   +A+ +  RM+    +
Sbjct: 87  TGVVASYLACGATKDALSVLERVTPSPAVWWNLLVREHIKEGHLDRAIGVSCRMLRAGTK 146

Query: 315 PNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQV 374
           P+  T    L AC  + S   G+ +HG +    F SN  V ++L+ MYS+CG L D   V
Sbjct: 147 PDHFTLPYALKACGELPSYCCGRALHGLICCNGFESNVFVCNALVAMYSRCGSLEDASLV 206

Query: 375 FDLTDNK--ENSMLWNTMISALTQHGYDEQAIRLFHDMV------RSSVKPDKITLAVIL 426
           FD    K  ++ + WN++++A  +      A+ LF +M        ++ + D I++  IL
Sbjct: 207 FDEITRKGIDDVISWNSIVAAHVKGSNPRTALELFSEMSMIVHEKATNERSDIISIVNIL 266

Query: 427 NACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHD 486
            AC     + + +    S     G   +      LI+  A+ G  +  +     M ++ D
Sbjct: 267 PACASLKALPQ-IKEIHSYAIRNGTFADAFVCNALIDTYAKCGSMNDAVKVFNVMEFK-D 324

Query: 487 SYLWNAL 493
              WNA+
Sbjct: 325 VVSWNAM 331


>gi|302816499|ref|XP_002989928.1| hypothetical protein SELMODRAFT_130658 [Selaginella moellendorffii]
 gi|300142239|gb|EFJ08941.1| hypothetical protein SELMODRAFT_130658 [Selaginella moellendorffii]
          Length = 818

 Score =  313 bits (801), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 170/531 (32%), Positives = 281/531 (52%), Gaps = 13/531 (2%)

Query: 73  RVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYN-----NMLS 127
           R+   +K   +   TT++  ++IS +       + RK+  +I V N F  +      +++
Sbjct: 194 RIFKEMKCDMKPNSTTYI--NVISGFSTPEVLPEGRKIHAEI-VANGFDSDLVVATALIN 250

Query: 128 GYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFS 187
            Y   G    AR +FD M +RD+VSWN MI  Y ++G   E L+ Y+ L        + +
Sbjct: 251 MYGKCGSSHEAREVFDKMKKRDMVSWNVMIGCYVQNGDFHEALELYQKLDMEGFKRTKAT 310

Query: 188 FAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETD 247
           F  IL  C  ++ L   R VH  +L  G  S V +++++V+ YAKCG L +AR++F+   
Sbjct: 311 FVSILGACSSVKALAQGRLVHSHILERGLDSEVAVATALVNMYAKCGSLEEARKVFNAMK 370

Query: 248 ARDVLTWTTMVSGYAKLG---DMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALEL 304
            RD + W+T++  YA  G   D   A K+F+ +  ++ + W  +I  Y +NG    A+++
Sbjct: 371 NRDAVAWSTLIGAYASNGYGKDARKARKVFDRLGSRDTICWNAMITTYVQNGCAVAAMKI 430

Query: 305 FTRMM-ILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYS 363
           F  M     ++P+  TF + L ACAS+  L   K +H  +  +   SN +V ++LI+MY+
Sbjct: 431 FREMTGAAGLKPDAVTFIAVLEACASLGRLSEVKALHAQISESELESNVVVTNTLINMYA 490

Query: 364 KCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLA 423
           +CG L +  ++F     K   + W  M++A +Q+G   +A+ LF +M    VKPD +T  
Sbjct: 491 RCGSLEEAERLFAAAKEK-TVVSWTAMVAAFSQYGRYAEALDLFQEMDLEGVKPDDVTYT 549

Query: 424 VILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPY 483
            IL  CTH G +++G  YF  M    G+ P  +H A +++LL ++G        LE MP+
Sbjct: 550 SILFVCTHGGSLEQGWRYFTDMAELHGLAPTADHFAAMVDLLGRSGRLFDAKELLESMPF 609

Query: 484 EHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKV 543
           E D   W      CRIHG +++G    +++ + +P S+A +  +S+IY+A G    V  V
Sbjct: 610 EPDPVAWMTFLTACRIHGKLELGEAAAERVYELDPSSTAPYIAMSNIYAAHGMWEKVASV 669

Query: 544 RQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQM 594
           R+ + ER  KK   +S+IE++ K+H FS     HP  D +   L +L G M
Sbjct: 670 RKKMEERGLKKLPGLSFIEVDGKLHEFSSGGKYHPRTDEICEELTRLHGLM 720



 Score =  159 bits (403), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 115/463 (24%), Positives = 200/463 (43%), Gaps = 71/463 (15%)

Query: 54  TLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDK 113
           T   +L  C+    +  G+ +H  ++ + R    T + N LISMY KC S VDAR VF+ 
Sbjct: 9   TFLTVLCSCSSCGDVAEGRALHERIRCS-RFERDTMVGNALISMYGKCDSLVDARSVFES 67

Query: 114 IPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFY 173
           +  +                             +R+VVSWN MI  YA++G   E L  Y
Sbjct: 68  MDWR-----------------------------QRNVVSWNAMIAAYAQNGHSTEALVLY 98

Query: 174 KVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKC 233
             +    +  +  +F  +L  C  L +    R++H +V  +G  S   +++++V  YA+ 
Sbjct: 99  WRMNLQGLGTDHVTFVSVLGACSSLAQ---GREIHNRVFYSGLDSFQSLANALVTMYARF 155

Query: 234 GELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYT 293
           G + DA+R+F     RD  +W  ++  +++ GD   A ++F EM                
Sbjct: 156 GSVGDAKRMFQSLQTRDETSWNAVILAHSQSGDWSGALRIFKEMK--------------- 200

Query: 294 RNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTI 353
                              ++PN  T+ + +   ++   L  G+++H  ++   F S+ +
Sbjct: 201 -----------------CDMKPNSTTYINVISGFSTPEVLPEGRKIHAEIVANGFDSDLV 243

Query: 354 VMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRS 413
           V ++LI+MY KCG  ++ R+VFD    K + + WN MI    Q+G   +A+ L+  +   
Sbjct: 244 VATALINMYGKCGSSHEAREVFDKM-KKRDMVSWNVMIGCYVQNGDFHEALELYQKLDME 302

Query: 414 SVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQ 473
             K  K T   IL AC+    + +G     S   + G+         L+ + A+ G  ++
Sbjct: 303 GFKRTKATFVSILGACSSVKALAQG-RLVHSHILERGLDSEVAVATALVNMYAKCGSLEE 361

Query: 474 LMNQLEKMPYEHDSYLWNALHGVCRIHG---NIDMGRKVVDQL 513
                  M    D+  W+ L G    +G   +    RKV D+L
Sbjct: 362 ARKVFNAMK-NRDAVAWSTLIGAYASNGYGKDARKARKVFDRL 403



 Score =  109 bits (272), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 91/381 (23%), Positives = 173/381 (45%), Gaps = 45/381 (11%)

Query: 184 NEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLF 243
           +  +F  +L  C    ++   R +H ++  + F  + ++ ++++  Y KC  L DAR +F
Sbjct: 6   DNVTFLTVLCSCSSCGDVAEGRALHERIRCSRFERDTMVGNALISMYGKCDSLVDARSVF 65

Query: 244 DETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALE 303
           +  D R                             ++N VSW  +IA Y +NG   +AL 
Sbjct: 66  ESMDWR-----------------------------QRNVVSWNAMIAAYAQNGHSTEALV 96

Query: 304 LFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYS 363
           L+ RM +  +  +  TF S L AC+   SL  G+++H  +  +   S   + ++L+ MY+
Sbjct: 97  LYWRMNLQGLGTDHVTFVSVLGACS---SLAQGREIHNRVFYSGLDSFQSLANALVTMYA 153

Query: 364 KCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLA 423
           + G + D +++F     ++ +  WN +I A +Q G    A+R+F +M +  +KP+  T  
Sbjct: 154 RFGSVGDAKRMFQSLQTRDETS-WNAVILAHSQSGDWSGALRIFKEM-KCDMKPNSTTYI 211

Query: 424 VILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPY 483
            +++  +   ++ EG      +  + G   +      LI +  + G S +     +KM  
Sbjct: 212 NVISGFSTPEVLPEGRKIHAEIVAN-GFDSDLVVATALINMYGKCGSSHEAREVFDKMK- 269

Query: 484 EHDSYLWNALHGVCRIHGNIDMGRKVVDQL-IDQNPQSSATH----GLLSSIYSALGKGR 538
           + D   WN + G    +G+     ++  +L ++   ++ AT     G  SS+  AL +GR
Sbjct: 270 KRDMVSWNVMIGCYVQNGDFHEALELYQKLDMEGFKRTKATFVSILGACSSV-KALAQGR 328

Query: 539 LVEKVRQLINERQFKKEQAIS 559
           LV      I ER    E A++
Sbjct: 329 LVH---SHILERGLDSEVAVA 346



 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 46/145 (31%), Positives = 79/145 (54%), Gaps = 9/145 (6%)

Query: 314 RPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQ 373
           +P+  TF + LC+C+S   +  G+ +H  +  + F  +T+V ++LI MY KC  L D R 
Sbjct: 4   QPDNVTFLTVLCSCSSCGDVAEGRALHERIRCSRFERDTMVGNALISMYGKCDSLVDARS 63

Query: 374 VFDLTDNKE-NSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACT-- 430
           VF+  D ++ N + WN MI+A  Q+G+  +A+ L+  M    +  D +T   +L AC+  
Sbjct: 64  VFESMDWRQRNVVSWNAMIAAYAQNGHSTEALVLYWRMNLQGLGTDHVTFVSVLGACSSL 123

Query: 431 ------HSGLVQEGLTYFESMTHDL 449
                 H+ +   GL  F+S+ + L
Sbjct: 124 AQGREIHNRVFYSGLDSFQSLANAL 148


>gi|413934265|gb|AFW68816.1| hypothetical protein ZEAMMB73_462632 [Zea mays]
          Length = 648

 Score =  313 bits (801), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 164/487 (33%), Positives = 273/487 (56%), Gaps = 3/487 (0%)

Query: 118 NLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLR 177
           ++F  N  +  ++  G M  AR LFD    RDVVSWNT+I GY +SG   E L+ +  L 
Sbjct: 155 DVFVVNAAMHFWSVRGPMAFARRLFDESPVRDVVSWNTLIGGYVRSGLPREALELFWRLA 214

Query: 178 R--FSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGE 235
               ++  +E +  G ++ C ++ +L+L +++H  V   G    V + ++++D Y KCG 
Sbjct: 215 EDGNAVRPDEVTVIGAVSGCAQMGDLELGKRLHEFVDNKGVRCTVRLMNAVMDMYVKCGS 274

Query: 236 LSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRN 295
           L  A  +F+    R  ++WTTM+ G+A+LG ME A  LF+EMPE++   W  L+AGY +N
Sbjct: 275 LELANSVFERISNRTAVSWTTMIVGHARLGMMEDARMLFDEMPERDVFPWNALMAGYVQN 334

Query: 296 GLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVM 355
             G++A+ LF  M   ++ PN+ T  + L AC+ + +L+ G  VH ++ R     +  + 
Sbjct: 335 KQGKEAIALFHEMQKSKVDPNEITMVNLLSACSQLGALEMGMWVHHYIDRHKLHLSVALG 394

Query: 356 SSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSV 415
           +SL+DMY+KCG +     VF+     +N++ W +MI  L  HG+ ++AI  F  M+   +
Sbjct: 395 TSLVDMYAKCGNIKKAICVFNEIP-VQNALTWTSMICGLANHGHADEAIEYFQRMIDLGL 453

Query: 416 KPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLM 475
           +PD+IT   +L+AC H+GLV+ G  +F  M     +    +H++C+I+LL +AG  D+  
Sbjct: 454 QPDEITFIGVLSACCHAGLVEAGRQFFSLMHAKYHLERKMKHYSCMIDLLGRAGHLDEAE 513

Query: 476 NQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALG 535
             +  MP + D+ +W AL   CR+HGNI +G K   +L++ +P  S  + LL+++Y+   
Sbjct: 514 QLVNAMPMDPDAVVWGALFFACRMHGNITLGEKAAMKLVELDPSDSGIYVLLANMYAEAN 573

Query: 536 KGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQMG 595
             +  +KVR ++     +K    S IE+   VH F V D  H   + +Y  L ++  QM 
Sbjct: 574 MRKKADKVRVMMRHLGVEKVPGCSCIELNGVVHEFIVKDKSHLDTNAIYDCLHEITLQMR 633

Query: 596 EDAPSLD 602
             A  +D
Sbjct: 634 HIANLID 640



 Score =  167 bits (423), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 107/384 (27%), Positives = 183/384 (47%), Gaps = 38/384 (9%)

Query: 18  NCLIQSFLSLISKGQLSEAISSLDLLAQRG--IRLPAETLAFILQQCAESKSLKLGKRVH 75
           N LI  +   +  G   EA+     LA+ G  +R    T+   +  CA+   L+LGKR+H
Sbjct: 191 NTLIGGY---VRSGLPREALELFWRLAEDGNAVRPDEVTVIGAVSGCAQMGDLELGKRLH 247

Query: 76  LHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMM 135
             +     +  T  L N ++ MY KCGS   A  VF++I  +   S+  M+ G+A LGMM
Sbjct: 248 EFVDNKGVRC-TVRLMNAVMDMYVKCGSLELANSVFERISNRTAVSWTTMIVGHARLGMM 306

Query: 136 KHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTIC 195
           + AR LFD M ERDV  WN ++ GY ++   +E +  +  +++  +  NE +   +L+ C
Sbjct: 307 EDARMLFDEMPERDVFPWNALMAGYVQNKQGKEAIALFHEMQKSKVDPNEITMVNLLSAC 366

Query: 196 VKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWT 255
            +L  L++   VH  +       +V + +S+VD YAKCG +  A  +F+E   ++ LTWT
Sbjct: 367 SQLGALEMGMWVHHYIDRHKLHLSVALGTSLVDMYAKCGNIKKAICVFNEIPVQNALTWT 426

Query: 256 TMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRP 315
           +M+ G A                                +G   +A+E F RM+ L ++P
Sbjct: 427 SMICGLAN-------------------------------HGHADEAIEYFQRMIDLGLQP 455

Query: 316 NQHTFSSCLCACASIVSLKHGKQVHGFL-IRTNFRSNTIVMSSLIDMYSKCGCLNDGRQV 374
           ++ TF   L AC     ++ G+Q    +  + +        S +ID+  + G L++  Q+
Sbjct: 456 DEITFIGVLSACCHAGLVEAGRQFFSLMHAKYHLERKMKHYSCMIDLLGRAGHLDEAEQL 515

Query: 375 FDLTDNKENSMLWNTMISALTQHG 398
            +      ++++W  +  A   HG
Sbjct: 516 VNAMPMDPDAVVWGALFFACRMHG 539



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 101/417 (24%), Positives = 185/417 (44%), Gaps = 78/417 (18%)

Query: 170 LKFYK-VLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVD 228
           L  Y+ +L   S   +  +F  ++  C +L+       V G V   GF ++V + ++ + 
Sbjct: 105 LPLYRALLHSGSARPDHLTFPFLIKACARLQYRSYGAAVLGHVQKLGFSADVFVVNAAMH 164

Query: 229 AYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTL 288
            ++  G ++ ARRLFDE+  RDV++W T++ G                            
Sbjct: 165 FWSVRGPMAFARRLFDESPVRDVVSWNTLIGG---------------------------- 196

Query: 289 IAGYTRNGLGQKALELFTRMMIL--RIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRT 346
              Y R+GL ++ALELF R+      +RP++ T    +  CA +  L+ GK++H F+   
Sbjct: 197 ---YVRSGLPREALELFWRLAEDGNAVRPDEVTVIGAVSGCAQMGDLELGKRLHEFVDNK 253

Query: 347 NFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNK-------------------ENSML- 386
             R    +M++++DMY KCG L     VF+   N+                   +  ML 
Sbjct: 254 GVRCTVRLMNAVMDMYVKCGSLELANSVFERISNRTAVSWTTMIVGHARLGMMEDARMLF 313

Query: 387 ----------WNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQ 436
                     WN +++   Q+   ++AI LFH+M +S V P++IT+  +L+AC+  G ++
Sbjct: 314 DEMPERDVFPWNALMAGYVQNKQGKEAIALFHEMQKSKVDPNEITMVNLLSACSQLGALE 373

Query: 437 EGL---TYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNAL 493
            G+    Y +     L +         L+++ A+ G   + +    ++P + ++  W ++
Sbjct: 374 MGMWVHHYIDRHKLHLSVALGTS----LVDMYAKCGNIKKAICVFNEIPVQ-NALTWTSM 428

Query: 494 HGVCRI--HGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLIN 548
             +C +  HG+ D   +   ++ID   Q          + SA     LVE  RQ  +
Sbjct: 429 --ICGLANHGHADEAIEYFQRMIDLGLQPDEI--TFIGVLSACCHAGLVEAGRQFFS 481


>gi|359483488|ref|XP_002273710.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Vitis vinifera]
          Length = 933

 Score =  313 bits (801), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 178/561 (31%), Positives = 302/561 (53%), Gaps = 66/561 (11%)

Query: 35  EAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHL 94
           +A+  L  + + GI     TL+  L+ CA     +LG+++H  L +        F+S  L
Sbjct: 342 QALELLGQMKRSGICPNIFTLSSALKACAGMGLKELGRQLHSSL-MKMDMESDLFVSVGL 400

Query: 95  ISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWN 154
           + MY KC                                +++ AR  F+ + E+D+++WN
Sbjct: 401 VDMYSKCD-------------------------------LLEDARMAFNLLPEKDLIAWN 429

Query: 155 TMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVT 214
            +I GY++     E L  +  + +  I  N+ + + IL     L+ + + RQVHG  + +
Sbjct: 430 AIISGYSQYWEDMEALSLFVEMHKEGIGFNQTTLSTILKSTAGLQVVHVCRQVHGLSVKS 489

Query: 215 GFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLF 274
           GF S++ + +S++D+Y KC  +                               E A ++F
Sbjct: 490 GFHSDIYVVNSLIDSYGKCSHV-------------------------------EDAERIF 518

Query: 275 NEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLK 334
            E    + VS+T++I  Y + G G++AL+LF  M  + ++P++   SS L ACA++ + +
Sbjct: 519 EECTIGDLVSFTSMITAYAQYGQGEEALKLFLEMQDMELKPDRFVCSSLLNACANLSAFE 578

Query: 335 HGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLND-GRQVFDLTDNKENSMLWNTMISA 393
            GKQ+H  +++  F  +    +SL++MY+KCG ++D GR   +LT+    S  W+ MI  
Sbjct: 579 QGKQLHVHILKYGFVLDIFAGNSLVNMYAKCGSIDDAGRAFSELTERGIVS--WSAMIGG 636

Query: 394 LTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIP 453
           L QHG+  QA++LF+ M++  V P+ ITL  +L AC H+GLV E   YFESM    G  P
Sbjct: 637 LAQHGHGRQALQLFNQMLKEGVSPNHITLVSVLGACNHAGLVTEAKLYFESMEELFGFKP 696

Query: 454 NQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQL 513
            QEH+AC+I+LL +AG  ++ +  + KMP+E ++ +W AL G  RIH ++++GR+  + L
Sbjct: 697 MQEHYACMIDLLGRAGKINEAVELVNKMPFEANASVWGALLGAARIHKDVELGRRAAEML 756

Query: 514 IDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVS 573
               P+ S TH LL++IY++ GK   V +VR+L+ + + KKE  +SWIE+++KV+ F V 
Sbjct: 757 FILEPEKSGTHVLLANIYASAGKWENVAEVRRLMRDSKVKKEPGMSWIEVKDKVYTFLVG 816

Query: 574 DSLHPMRDVLYSVLEQLAGQM 594
           D  H     +Y+ L++L+  M
Sbjct: 817 DRSHYRSQEIYAKLDELSDLM 837



 Score =  194 bits (494), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 116/382 (30%), Positives = 191/382 (50%), Gaps = 66/382 (17%)

Query: 58  ILQQCAESKSLKLGKRVHLHL-KLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPV 116
           +L QC  +KSL+ G ++H H+ K      P+  + NHLI++Y KC               
Sbjct: 62  LLSQCCTTKSLRPGLQIHAHITKSGLSDDPS--IRNHLINLYSKC--------------- 104

Query: 117 KNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVL 176
                         N G   +AR L D  +E D+VSW+ +I GYA++G     L  +  +
Sbjct: 105 -------------RNFG---YARKLVDESSEPDLVSWSALISGYAQNGLGGGALMAFHEM 148

Query: 177 RRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGEL 236
               + CNEF+F+ +L  C  +++L++ +QVHG V+V+GF  +V +++++V  YAKC E 
Sbjct: 149 HLLGVKCNEFTFSSVLKACSIVKDLRIGKQVHGVVVVSGFEGDVFVANTLVVMYAKCDEF 208

Query: 237 SDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNG 296
            D++RLFDE   R+V++W  + S Y ++                                
Sbjct: 209 LDSKRLFDEIPERNVVSWNALFSCYVQI-------------------------------D 237

Query: 297 LGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMS 356
              +A+ LF  M++  I+PN+ + SS + AC  +     GK +HG+LI+  +  +    +
Sbjct: 238 FCGEAVGLFYEMVLSGIKPNEFSLSSMVNACTGLRDSSRGKIIHGYLIKLGYDWDPFSAN 297

Query: 357 SLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVK 416
           +L+DMY+K G L D   VF+    + + + WN +I+    H + EQA+ L   M RS + 
Sbjct: 298 ALVDMYAKVGDLADAISVFEKI-KQPDIVSWNAVIAGCVLHEHHEQALELLGQMKRSGIC 356

Query: 417 PDKITLAVILNACTHSGLVQEG 438
           P+  TL+  L AC   GL + G
Sbjct: 357 PNIFTLSSALKACAGMGLKELG 378



 Score =  162 bits (411), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 133/568 (23%), Positives = 239/568 (42%), Gaps = 107/568 (18%)

Query: 47  GIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVD 106
           G++    T + +L+ C+  K L++GK+VH  + +        F++N L+ MY KC   +D
Sbjct: 152 GVKCNEFTFSSVLKACSIVKDLRIGKQVH-GVVVVSGFEGDVFVANTLVVMYAKCDEFLD 210

Query: 107 ARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMA-------------------- 146
           ++++FD+IP +N+ S+N + S Y  +     A  LF  M                     
Sbjct: 211 SKRLFDEIPERNVVSWNALFSCYVQIDFCGEAVGLFYEMVLSGIKPNEFSLSSMVNACTG 270

Query: 147 -------------------ERDVVSWNTMIIGYAKSGAV--------------------- 166
                              + D  S N ++  YAK G +                     
Sbjct: 271 LRDSSRGKIIHGYLIKLGYDWDPFSANALVDMYAKVGDLADAISVFEKIKQPDIVSWNAV 330

Query: 167 ----------EEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGF 216
                     E+ L+    ++R  I  N F+ +  L  C  +   +L RQ+H  ++    
Sbjct: 331 IAGCVLHEHHEQALELLGQMKRSGICPNIFTLSSALKACAGMGLKELGRQLHSSLMKMDM 390

Query: 217 LSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNE 276
            S++ +S  +VD Y+KC  L DAR  F+    +D++ W  ++SGY++             
Sbjct: 391 ESDLFVSVGLVDMYSKCDLLEDARMAFNLLPEKDLIAWNAIISGYSQY------------ 438

Query: 277 MPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHG 336
                   W  +           +AL LF  M    I  NQ T S+ L + A +  +   
Sbjct: 439 --------WEDM-----------EALSLFVEMHKEGIGFNQTTLSTILKSTAGLQVVHVC 479

Query: 337 KQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQ 396
           +QVHG  +++ F S+  V++SLID Y KC  + D  ++F+      + + + +MI+A  Q
Sbjct: 480 RQVHGLSVKSGFHSDIYVVNSLIDSYGKCSHVEDAERIFEEC-TIGDLVSFTSMITAYAQ 538

Query: 397 HGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQE 456
           +G  E+A++LF +M    +KPD+   + +LNAC +    ++G           G + +  
Sbjct: 539 YGQGEEALKLFLEMQDMELKPDRFVCSSLLNACANLSAFEQG-KQLHVHILKYGFVLDIF 597

Query: 457 HHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQ 516
               L+ + A+ G  D       ++  E     W+A+ G    HG+     ++ +Q++ +
Sbjct: 598 AGNSLVNMYAKCGSIDDAGRAFSELT-ERGIVSWSAMIGGLAQHGHGRQALQLFNQMLKE 656

Query: 517 NPQSSATHGLLSSIYSALGKGRLVEKVR 544
               S  H  L S+  A     LV + +
Sbjct: 657 G--VSPNHITLVSVLGACNHAGLVTEAK 682



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 92/332 (27%), Positives = 164/332 (49%), Gaps = 44/332 (13%)

Query: 187 SFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDET 246
           S++ +L+ C   + L+   Q+H  +  +G   +  I + +++ Y+KC     AR+L D  
Sbjct: 58  SYSKLLSQCCTTKSLRPGLQIHAHITKSGLSDDPSIRNHLINLYSKCRNFGYARKLVD-- 115

Query: 247 DARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFT 306
                                        E  E + VSW+ LI+GY +NGLG  AL  F 
Sbjct: 116 -----------------------------ESSEPDLVSWSALISGYAQNGLGGGALMAFH 146

Query: 307 RMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCG 366
            M +L ++ N+ TFSS L AC+ +  L+ GKQVHG ++ + F  +  V ++L+ MY+KC 
Sbjct: 147 EMHLLGVKCNEFTFSSVLKACSIVKDLRIGKQVHGVVVVSGFEGDVFVANTLVVMYAKCD 206

Query: 367 CLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVIL 426
              D +++FD    + N + WN + S   Q  +  +A+ LF++MV S +KP++ +L+ ++
Sbjct: 207 EFLDSKRLFDEIPER-NVVSWNALFSCYVQIDFCGEAVGLFYEMVLSGIKPNEFSLSSMV 265

Query: 427 NACT-----HSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKM 481
           NACT       G +  G  Y   + +D            L+++ A+ G     ++  EK+
Sbjct: 266 NACTGLRDSSRGKIIHG--YLIKLGYDWDPFSAN----ALVDMYAKVGDLADAISVFEKI 319

Query: 482 PYEHDSYLWNALHGVCRIHGNIDMGRKVVDQL 513
             + D   WNA+   C +H + +   +++ Q+
Sbjct: 320 K-QPDIVSWNAVIAGCVLHEHHEQALELLGQM 350



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 32/116 (27%), Positives = 61/116 (52%), Gaps = 1/116 (0%)

Query: 315 PNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQV 374
           P   ++S  L  C +  SL+ G Q+H  + ++    +  + + LI++YSKC      R++
Sbjct: 54  PTSVSYSKLLSQCCTTKSLRPGLQIHAHITKSGLSDDPSIRNHLINLYSKCRNFGYARKL 113

Query: 375 FDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACT 430
            D   ++ + + W+ +IS   Q+G    A+  FH+M    VK ++ T + +L AC+
Sbjct: 114 VD-ESSEPDLVSWSALISGYAQNGLGGGALMAFHEMHLLGVKCNEFTFSSVLKACS 168



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 38/132 (28%), Positives = 65/132 (49%), Gaps = 5/132 (3%)

Query: 23  SFLSLISK----GQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHL 78
           SF S+I+     GQ  EA+     +    ++      + +L  CA   + + GK++H+H+
Sbjct: 528 SFTSMITAYAQYGQGEEALKLFLEMQDMELKPDRFVCSSLLNACANLSAFEQGKQLHVHI 587

Query: 79  KLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHA 138
            L        F  N L++MY KCGS  DA + F ++  + + S++ M+ G A  G  + A
Sbjct: 588 -LKYGFVLDIFAGNSLVNMYAKCGSIDDAGRAFSELTERGIVSWSAMIGGLAQHGHGRQA 646

Query: 139 RNLFDNMAERDV 150
             LF+ M +  V
Sbjct: 647 LQLFNQMLKEGV 658


>gi|356507248|ref|XP_003522381.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
           mitochondrial-like [Glycine max]
          Length = 635

 Score =  313 bits (801), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 173/553 (31%), Positives = 290/553 (52%), Gaps = 20/553 (3%)

Query: 43  LAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCG 102
           L +R  R P  T +F+           L K V  H    +        SN LI+ Y +CG
Sbjct: 6   LLRRKKRSPLLTSSFV----------TLSKYVSSHTHQHEFNNNNVIASNKLIASYVRCG 55

Query: 103 SDVDARKVFDKIPVKNLFSYNNMLSGYAN-LGMMKHARNLFDNMAERDVVSWNTMIIGYA 161
               A +VF+ + VK+  ++N++L+ +A   G  ++AR LF+ + + + VS+N M+  + 
Sbjct: 56  DIDSAVRVFEDMKVKSTVTWNSILAAFAKKPGHFEYARQLFEKIPQPNTVSYNIMLACHW 115

Query: 162 KSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVV 221
               V +   F+  +    ++      + +  + +  E  +L   +  +        N V
Sbjct: 116 HHLGVHDARGFFDSMPLKDVASWNTMISALAQVGLMGEARRLFSAMPEK--------NCV 167

Query: 222 ISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKN 281
             S++V  Y  CG+L  A   F     R V+TWT M++GY K G +E A +LF EM  + 
Sbjct: 168 SWSAMVSGYVACGDLDAAVECFYAAPMRSVITWTAMITGYMKFGRVELAERLFQEMSMRT 227

Query: 282 PVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHG 341
            V+W  +IAGY  NG  +  L LF  M+   ++PN  + +S L  C+++ +L+ GKQVH 
Sbjct: 228 LVTWNAMIAGYVENGRAEDGLRLFRTMLETGVKPNALSLTSVLLGCSNLSALQLGKQVHQ 287

Query: 342 FLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDE 401
            + +    S+T   +SL+ MYSKCG L D  ++F +   +++ + WN MIS   QHG  +
Sbjct: 288 LVCKCPLSSDTTAGTSLVSMYSKCGDLKDAWELF-IQIPRKDVVCWNAMISGYAQHGAGK 346

Query: 402 QAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACL 461
           +A+RLF +M +  +KPD IT   +L AC H+GLV  G+ YF +M  D GI    EH+AC+
Sbjct: 347 KALRLFDEMKKEGLKPDWITFVAVLLACNHAGLVDLGVQYFNTMRRDFGIETKPEHYACM 406

Query: 462 IELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSS 521
           ++LL +AG   + ++ ++ MP++    ++  L G CRIH N+++       L++ +P  +
Sbjct: 407 VDLLGRAGKLSEAVDLIKSMPFKPHPAIYGTLLGACRIHKNLNLAEFAAKNLLELDPTIA 466

Query: 522 ATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRD 581
             +  L+++Y+A  +   V  +R+ + +    K    SWIEI + VH F  SD LHP   
Sbjct: 467 TGYVQLANVYAAQNRWDHVASIRRSMKDNNVVKIPGYSWIEINSVVHGFRSSDRLHPELA 526

Query: 582 VLYSVLEQLAGQM 594
            ++  L+ L  +M
Sbjct: 527 SIHEKLKDLEKKM 539



 Score = 79.3 bits (194), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 51/182 (28%), Positives = 95/182 (52%), Gaps = 9/182 (4%)

Query: 18  NCLIQSFLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLH 77
           N +I  +   +  G+  + +     + + G++  A +L  +L  C+   +L+LGK+VH  
Sbjct: 232 NAMIAGY---VENGRAEDGLRLFRTMLETGVKPNALSLTSVLLGCSNLSALQLGKQVHQL 288

Query: 78  LKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKH 137
           +      + TT     L+SMY KCG   DA ++F +IP K++  +N M+SGYA  G  K 
Sbjct: 289 VCKCPLSSDTT-AGTSLVSMYSKCGDLKDAWELFIQIPRKDVVCWNAMISGYAQHGAGKK 347

Query: 138 ARNLFDNMAER----DVVSWNTMIIGYAKSGAVEEGLKFYKVLRR-FSISCNEFSFAGIL 192
           A  LFD M +     D +++  +++    +G V+ G++++  +RR F I      +A ++
Sbjct: 348 ALRLFDEMKKEGLKPDWITFVAVLLACNHAGLVDLGVQYFNTMRRDFGIETKPEHYACMV 407

Query: 193 TI 194
            +
Sbjct: 408 DL 409


>gi|224071204|ref|XP_002303374.1| predicted protein [Populus trichocarpa]
 gi|222840806|gb|EEE78353.1| predicted protein [Populus trichocarpa]
          Length = 569

 Score =  313 bits (801), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 161/495 (32%), Positives = 267/495 (53%), Gaps = 41/495 (8%)

Query: 84  KTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFD 143
           KT  T+ ++ L  M  K G   +A+++F KIP  +  SYN MLS Y     M+ A+  F+
Sbjct: 4   KTTVTW-NSVLAGMSKKRGKLKEAQELFVKIPEPDAVSYNTMLSCYVRNSNMERAQAFFE 62

Query: 144 NMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKL 203
           +M  +D  SWNTMI G+A++  +++    + ++                           
Sbjct: 63  DMPIKDTPSWNTMITGFAQNQQMDKARDLFLIMPT------------------------- 97

Query: 204 TRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAK 263
                          NVV  ++++  Y +CG+L  A +LF++   + V+ WT M++GY K
Sbjct: 98  --------------KNVVTWNAMISGYVECGDLDSALKLFEKAPFKSVVAWTAMITGYMK 143

Query: 264 LGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSC 323
           LG +  A +LF +MPEKN V+W  +IAGY  N   +  ++LF  M+   I+PN  T SS 
Sbjct: 144 LGRIGLAERLFEKMPEKNLVTWNAMIAGYIENHRAEDGVKLFRTMVGFGIQPNSSTLSSA 203

Query: 324 LCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKEN 383
           L  C+ + +L+ G+QVH  + ++    +T   +SLI MY KCG L DG ++F +   + +
Sbjct: 204 LLGCSELSALQLGRQVHQLVCKSPLCDDTTAGTSLISMYCKCGVLEDGWKLF-VQVPRRD 262

Query: 384 SMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFE 443
            + WN MIS   QHG  ++A+ LF +M+   +KPD IT   +L AC H+G    G+ YF 
Sbjct: 263 VVTWNAMISGYAQHGEGKKALGLFDEMIEKGMKPDWITFVAVLMACNHAGFTDLGVKYFH 322

Query: 444 SMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNI 503
           SM  D G++   +H+ C+++LL +AG   + ++ +EKMP++  + ++  L G CRIH N 
Sbjct: 323 SMAKDYGLVAKPDHYTCMVDLLGRAGKLVEAVDLIEKMPFKPHAAVFGTLLGACRIHKNT 382

Query: 504 DMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEI 563
           +M      +L++ +P S+  +  L+++Y+A  +   V +VR+ +   +  K    SWIE+
Sbjct: 383 EMAEFASQKLLNLDPASATGYVQLANVYAATKRWDHVARVRKSMKSCKVVKTPGYSWIEV 442

Query: 564 ENKVHAFSVSDSLHP 578
           ++  H F   D  HP
Sbjct: 443 KSMAHQFRSGDKFHP 457



 Score =  116 bits (290), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 95/379 (25%), Positives = 171/379 (45%), Gaps = 53/379 (13%)

Query: 66  KSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNM 125
           K  KL +   L +K+ +   P     N ++S Y +  +   A+  F+ +P+K+  S+N M
Sbjct: 19  KRGKLKEAQELFVKIPE---PDAVSYNTMLSCYVRNSNMERAQAFFEDMPIKDTPSWNTM 75

Query: 126 LSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNE 185
           ++G+A    M  AR+LF  M  ++VV+WN MI GY + G ++  LK ++     S+    
Sbjct: 76  ITGFAQNQQMDKARDLFLIMPTKNVVTWNAMISGYVECGDLDSALKLFEKAPFKSV---- 131

Query: 186 FSFAGILTICVKLEELKLTRQ----------VHGQVLVTGFLSNVVI------------- 222
            ++  ++T  +KL  + L  +          V    ++ G++ N                
Sbjct: 132 VAWTAMITGYMKLGRIGLAERLFEKMPEKNLVTWNAMIAGYIENHRAEDGVKLFRTMVGF 191

Query: 223 -----SSSIVDAYAKCGELSDAR------------RLFDETDARDVLTWTTMVSGYAKLG 265
                SS++  A   C ELS  +             L D+T A      T+++S Y K G
Sbjct: 192 GIQPNSSTLSSALLGCSELSALQLGRQVHQLVCKSPLCDDTTAG-----TSLISMYCKCG 246

Query: 266 DMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLC 325
            +E   KLF ++P ++ V+W  +I+GY ++G G+KAL LF  M+   ++P+  TF + L 
Sbjct: 247 VLEDGWKLFVQVPRRDVVTWNAMISGYAQHGEGKKALGLFDEMIEKGMKPDWITFVAVLM 306

Query: 326 ACASIVSLKHG-KQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENS 384
           AC        G K  H         +     + ++D+  + G L +   + +    K ++
Sbjct: 307 ACNHAGFTDLGVKYFHSMAKDYGLVAKPDHYTCMVDLLGRAGKLVEAVDLIEKMPFKPHA 366

Query: 385 MLWNTMISALTQHGYDEQA 403
            ++ T++ A   H   E A
Sbjct: 367 AVFGTLLGACRIHKNTEMA 385



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 44/131 (33%), Positives = 73/131 (55%), Gaps = 5/131 (3%)

Query: 47  GIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVD 106
           GI+  + TL+  L  C+E  +L+LG++VH  L         T     LISMY KCG   D
Sbjct: 192 GIQPNSSTLSSALLGCSELSALQLGRQVH-QLVCKSPLCDDTTAGTSLISMYCKCGVLED 250

Query: 107 ARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAER----DVVSWNTMIIGYAK 162
             K+F ++P +++ ++N M+SGYA  G  K A  LFD M E+    D +++  +++    
Sbjct: 251 GWKLFVQVPRRDVVTWNAMISGYAQHGEGKKALGLFDEMIEKGMKPDWITFVAVLMACNH 310

Query: 163 SGAVEEGLKFY 173
           +G  + G+K++
Sbjct: 311 AGFTDLGVKYF 321


>gi|357502643|ref|XP_003621610.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355496625|gb|AES77828.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 881

 Score =  312 bits (800), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 157/506 (31%), Positives = 268/506 (52%), Gaps = 46/506 (9%)

Query: 100 KCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIG 159
           KCG D             N+   N +L  YA  G +  A  +FD+M  +D VSWN +I  
Sbjct: 400 KCGLDF------------NICVANTILDMYAKCGALMEACLIFDDMEIKDAVSWNAIIAA 447

Query: 160 YAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSN 219
           + ++  VEE L  +  + R ++  ++++F  ++  C   + L    +VHG+V+ +G   +
Sbjct: 448 HEQNEHVEETLALFVSMLRSTMEPDDYTFGSVVKACAGKKALNYGMEVHGRVIKSGMGLD 507

Query: 220 VVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPE 279
             + S+I+D Y KCG L +A                                K+   + E
Sbjct: 508 WFVGSAIIDMYCKCGMLVEAE-------------------------------KIHERLEE 536

Query: 280 KNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQV 339
           +  VSW ++I+G++    G+ AL  F+RM+ + + P+  T+++ L  CA++ +++ GKQ+
Sbjct: 537 RTTVSWNSIISGFSSEKQGENALSYFSRMLQVGVIPDNFTYATVLDICANLATVELGKQI 596

Query: 340 HGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGY 399
           HG +++    S+  + S+++DMYSKCG + D R +F+    K + + W+ MI A   HG 
Sbjct: 597 HGQILKLQLHSDVYIASTIVDMYSKCGNMQDSRIMFEKAP-KRDYVTWSAMICAYAYHGL 655

Query: 400 DEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHA 459
            E AI+LF +M   +VKP+      +L AC H G V +GL YF  M    G+ P  EH++
Sbjct: 656 GEDAIKLFEEMQLQNVKPNHTIFISVLRACAHMGFVDKGLHYFREMRSHYGLDPQMEHYS 715

Query: 460 CLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQ 519
           C+++LL ++G  ++ +  +E MP+E D  +W  L G+CR+ GN+++  K  + L+  +PQ
Sbjct: 716 CMVDLLGRSGQVNEALELIESMPFEADDVIWRTLLGICRLQGNVEVAEKAANSLLQLDPQ 775

Query: 520 SSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPM 579
            S+ + LLS++Y+  G    V K+R  +   + KKE   SWI++ ++VHAF V D  HP 
Sbjct: 776 DSSAYVLLSNVYAIAGMWGEVAKIRSFMKNYKLKKEPGCSWIQVRDEVHAFLVGDKAHPR 835

Query: 580 RDVLYSVLEQLAGQMGEDA--PSLDA 603
            + +Y     L  +M  D   P +D 
Sbjct: 836 SEEIYQQTHLLVDEMKWDGYVPEIDG 861



 Score =  206 bits (524), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 131/449 (29%), Positives = 228/449 (50%), Gaps = 45/449 (10%)

Query: 51  PAETLAF--ILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDAR 108
           P + L F  I Q+C+  K++  GK+ H  + +T    PT F+SN L+  Y KC +   A 
Sbjct: 35  PTKKLTFSHIFQKCSNLKAINPGKQAHAQITVTGF-VPTVFVSNCLLQFYCKCLNLNYAF 93

Query: 109 KVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEE 168
            VFDK+P +++ S+N M+ GYA +G M+ A+ LFD+M ERDVVSWN+M+  Y ++G   +
Sbjct: 94  NVFDKMPQRDVISWNTMIFGYAGVGNMEFAQFLFDSMPERDVVSWNSMLSCYLQNGFHRK 153

Query: 169 GLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVD 228
            ++ +  +R   I  +  +FA +L  C  +E+  L  QVH   +  GF S+VV  +++VD
Sbjct: 154 SIEIFTKMRLLEIQHDYATFAVVLKACTGIEDYGLGLQVHCLAIQMGFDSDVVTGTALVD 213

Query: 229 AYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTL 288
            Y+ C +L  A  +F E   R+ + W+ ++                              
Sbjct: 214 MYSTCKKLDHAFNIFCEMPERNSVCWSAVI------------------------------ 243

Query: 289 IAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNF 348
            AGY RN    + L+L+  M+   +  +Q TF+S   +CA + + + G Q+H + ++TNF
Sbjct: 244 -AGYVRNDRFTEGLKLYKVMLDEGMGVSQATFASAFRSCAGLSAFELGTQLHAYALKTNF 302

Query: 349 RSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFH 408
             + IV ++ +DMY+KC  + D R+VF+   N       N +I    +     +A+ +F 
Sbjct: 303 GYDNIVGTATLDMYAKCDRMVDARKVFNTFPNPTRQS-HNALIVGYARQDQVLEALEIFR 361

Query: 409 DMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHAC----LIEL 464
            + +S +  D+I+L+  L AC+      EG+       H L +    + + C    ++++
Sbjct: 362 SLQKSYLDFDEISLSGALTACSAIKGYLEGIQ-----LHGLAVKCGLDFNICVANTILDM 416

Query: 465 LAQAGCSDQLMNQLEKMPYEHDSYLWNAL 493
            A+ G   +     + M  + D+  WNA+
Sbjct: 417 YAKCGALMEACLIFDDMEIK-DAVSWNAI 444



 Score =  167 bits (424), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 89/270 (32%), Positives = 150/270 (55%), Gaps = 14/270 (5%)

Query: 180 SISCNE------FSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKC 233
           SIS N+       +F+ I   C  L+ +   +Q H Q+ VTGF+  V +S+ ++  Y KC
Sbjct: 27  SISSNQMNPTKKLTFSHIFQKCSNLKAINPGKQAHAQITVTGFVPTVFVSNCLLQFYCKC 86

Query: 234 GELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYT 293
             L+ A  +FD+   RDV++W TM+ GYA +G+ME A  LF+ MPE++ VSW ++++ Y 
Sbjct: 87  LNLNYAFNVFDKMPQRDVISWNTMIFGYAGVGNMEFAQFLFDSMPERDVVSWNSMLSCYL 146

Query: 294 RNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTI 353
           +NG  +K++E+FT+M +L I+ +  TF+  L AC  I     G QVH   I+  F S+ +
Sbjct: 147 QNGFHRKSIEIFTKMRLLEIQHDYATFAVVLKACTGIEDYGLGLQVHCLAIQMGFDSDVV 206

Query: 354 VMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRS 413
             ++L+DMYS C  L+    +F     + NS+ W+ +I+   ++    + ++L+  M+  
Sbjct: 207 TGTALVDMYSTCKKLDHAFNIF-CEMPERNSVCWSAVIAGYVRNDRFTEGLKLYKVMLDE 265

Query: 414 SVKPDKITLAVILNACTHSGLVQEGLTYFE 443
            +   + T A    +C        GL+ FE
Sbjct: 266 GMGVSQATFASAFRSCA-------GLSAFE 288



 Score =  159 bits (402), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 120/529 (22%), Positives = 226/529 (42%), Gaps = 78/529 (14%)

Query: 19  CLIQSFLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHL 78
           C        +   + +E +    ++   G+ +   T A   + CA   + +LG ++H + 
Sbjct: 238 CWSAVIAGYVRNDRFTEGLKLYKVMLDEGMGVSQATFASAFRSCAGLSAFELGTQLHAY- 296

Query: 79  KLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNM-----LSGYANLG 133
                                                +K  F Y+N+     L  YA   
Sbjct: 297 ------------------------------------ALKTNFGYDNIVGTATLDMYAKCD 320

Query: 134 MMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILT 193
            M  AR +F+        S N +I+GYA+   V E L+ ++ L++  +  +E S +G LT
Sbjct: 321 RMVDARKVFNTFPNPTRQSHNALIVGYARQDQVLEALEIFRSLQKSYLDFDEISLSGALT 380

Query: 194 ICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLT 253
            C  ++      Q+HG  +  G   N+ ++++I+D YAKCG L +A  +FD+ + +D ++
Sbjct: 381 ACSAIKGYLEGIQLHGLAVKCGLDFNICVANTILDMYAKCGALMEACLIFDDMEIKDAVS 440

Query: 254 WTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRI 313
           W                                 +IA + +N   ++ L LF  M+   +
Sbjct: 441 W-------------------------------NAIIAAHEQNEHVEETLALFVSMLRSTM 469

Query: 314 RPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQ 373
            P+ +TF S + ACA   +L +G +VHG +I++    +  V S++IDMY KCG L +  +
Sbjct: 470 EPDDYTFGSVVKACAGKKALNYGMEVHGRVIKSGMGLDWFVGSAIIDMYCKCGMLVEAEK 529

Query: 374 VFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSG 433
           + +  + +  ++ WN++IS  +     E A+  F  M++  V PD  T A +L+ C +  
Sbjct: 530 IHERLEER-TTVSWNSIISGFSSEKQGENALSYFSRMLQVGVIPDNFTYATVLDICANLA 588

Query: 434 LVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNAL 493
            V+ G          L +  +    + ++++ ++ G         EK P + D   W+A+
Sbjct: 589 TVELG-KQIHGQILKLQLHSDVYIASTIVDMYSKCGNMQDSRIMFEKAP-KRDYVTWSAM 646

Query: 494 HGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEK 542
                 HG  +   K+ +++  QN + +  H +  S+  A      V+K
Sbjct: 647 ICAYAYHGLGEDAIKLFEEMQLQNVKPN--HTIFISVLRACAHMGFVDK 693



 Score =  128 bits (322), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 90/353 (25%), Positives = 164/353 (46%), Gaps = 68/353 (19%)

Query: 54  TLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDK 113
           T   +++ CA  K+L  G  VH  + +        F+ + +I MY KCG  V+A K+ ++
Sbjct: 475 TFGSVVKACAGKKALNYGMEVHGRV-IKSGMGLDWFVGSAIIDMYCKCGMLVEAEKIHER 533

Query: 114 IPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFY 173
           +  +   S+N+++SG+++    ++A + F  M +  V+  N                   
Sbjct: 534 LEERTTVSWNSIISGFSSEKQGENALSYFSRMLQVGVIPDN------------------- 574

Query: 174 KVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKC 233
                       F++A +L IC  L  ++L +Q+HGQ+L     S+V I+S+IVD Y+KC
Sbjct: 575 ------------FTYATVLDICANLATVELGKQIHGQILKLQLHSDVYIASTIVDMYSKC 622

Query: 234 GELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYT 293
           G + D+R +F++   RD +TW+ M+  YA  G  E A KLF EM  +N            
Sbjct: 623 GNMQDSRIMFEKAPKRDYVTWSAMICAYAYHGLGEDAIKLFEEMQLQN------------ 670

Query: 294 RNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFL-IRTNFRSNT 352
                              ++PN   F S L ACA +  +  G  +H F  +R+++  + 
Sbjct: 671 -------------------VKPNHTIFISVLRACAHMGFVDKG--LHYFREMRSHYGLDP 709

Query: 353 IV--MSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQA 403
            +   S ++D+  + G +N+  ++ +    + + ++W T++      G  E A
Sbjct: 710 QMEHYSCMVDLLGRSGQVNEALELIESMPFEADDVIWRTLLGICRLQGNVEVA 762



 Score = 72.4 bits (176), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 66/278 (23%), Positives = 129/278 (46%), Gaps = 47/278 (16%)

Query: 12  RKNLPNNCLIQSFLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLG 71
           R  +  N +I  F    S+ Q   A+S    + Q G+     T A +L  CA   +++LG
Sbjct: 537 RTTVSWNSIISGF---SSEKQGENALSYFSRMLQVGVIPDNFTYATVLDICANLATVELG 593

Query: 72  KRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYAN 131
           K++H  +   Q  +   ++++ ++ MY KCG+  D+R +F+K P ++  +++ M+  YA 
Sbjct: 594 KQIHGQILKLQLHS-DVYIASTIVDMYSKCGNMQDSRIMFEKAPKRDYVTWSAMICAYAY 652

Query: 132 LGMMKHARNLFDNMAERDVVSWNTMIIGYAKS----GAVEEGLKFYKVLRRFSISCNEFS 187
            G+ + A  LF+ M  ++V   +T+ I   ++    G V++GL +++ +R          
Sbjct: 653 HGLGEDAIKLFEEMQLQNVKPNHTIFISVLRACAHMGFVDKGLHYFREMRSH-------- 704

Query: 188 FAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDET- 246
                                      G    +   S +VD   + G++++A  L +   
Sbjct: 705 --------------------------YGLDPQMEHYSCMVDLLGRSGQVNEALELIESMP 738

Query: 247 -DARDVLTWTTMVSGYAKL-GDMESASKLFNEMPEKNP 282
            +A DV+ W T++ G  +L G++E A K  N + + +P
Sbjct: 739 FEADDVI-WRTLL-GICRLQGNVEVAEKAANSLLQLDP 774


>gi|168003497|ref|XP_001754449.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162694551|gb|EDQ80899.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 723

 Score =  312 bits (800), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 182/589 (30%), Positives = 309/589 (52%), Gaps = 47/589 (7%)

Query: 16  PNNCLIQSFLSLISK-GQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRV 74
           PN  L  + LS+ +K G L++A    D +  R I       A I    A +K+L+  K  
Sbjct: 80  PNRYLENTLLSMYAKCGSLTDARRVFDSIRDRNI---VSWTAMIEAFVAGNKNLEAFK-C 135

Query: 75  HLHLKLTQRKT-PTTFLSNHLISMY-----FKCGSDVDARKVFDKIPVKNLFSYNNMLSG 128
           +  +KL   K    TF+S  L++ +      + G  V    V   + ++      +++  
Sbjct: 136 YETMKLAGCKPDKVTFVS--LLNAFTNPELLQLGQKVHMEIVEAGLELEPRVG-TSLVGM 192

Query: 129 YANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSF 188
           YA  G +  AR +FD + E++VV+W  +I GYA+ G V+  L+  + +++  ++ N+ +F
Sbjct: 193 YAKCGDISKARVIFDRLPEKNVVTWTLLIAGYAQQGQVDVALELLETMQQAEVAPNKITF 252

Query: 189 AGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDA 248
           A IL  C     L+  ++VH  ++ +G+   + + +S++  Y KC               
Sbjct: 253 ASILQGCTTPAALEHGKKVHRYIIQSGYGRELWVVNSLITMYCKC--------------- 297

Query: 249 RDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRM 308
                           G +E A KLF+++P ++ V+WT ++ GY + G   +A+ LF RM
Sbjct: 298 ----------------GGLEEARKLFSDLPHRDVVTWTAMVTGYAQLGFHDEAINLFRRM 341

Query: 309 MILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCL 368
               I+P++ TF+S L +C+S   L+ GK++H  L+   +  +  + S+L+ MY+KCG +
Sbjct: 342 QQQGIKPDKMTFTSVLTSCSSPAFLQEGKRIHQQLVHAGYNLDVYLQSALVSMYAKCGSM 401

Query: 369 NDGRQVFDLTDNKENSMLWNTMISAL-TQHGYDEQAIRLFHDMVRSSVKPDKITLAVILN 427
           +D   VF+    + N + W  +I+    QHG   +A+  F  M +  +KPDK+T   +L+
Sbjct: 402 DDASLVFNQMSER-NVVAWTAIITGCCAQHGRCREALEYFDQMKKQGIKPDKVTFTSVLS 460

Query: 428 ACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDS 487
           ACTH GLV+EG  +F SM  D GI P  EH++C ++LL +AG  ++  N +  MP+    
Sbjct: 461 ACTHVGLVEEGRKHFRSMYLDYGIKPMVEHYSCFVDLLGRAGHLEEAENVILSMPFIPGP 520

Query: 488 YLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLI 547
            +W AL   CR+H +++ G +  + ++  +P     +  LSSIY+A G+    EKVRQ++
Sbjct: 521 SVWGALLSACRVHSDVERGERAAENVLKLDPDDDGAYVALSSIYAAAGRYEDAEKVRQVM 580

Query: 548 NERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQMGE 596
            +R   KE   SWIE++ KVH F V D  HP  + +Y  L +L  Q+ E
Sbjct: 581 EKRDVVKEPGQSWIEVDGKVHVFHVEDKSHPESEQIYVELGKLTEQIKE 629



 Score =  228 bits (581), Expect = 7e-57,   Method: Compositional matrix adjust.
 Identities = 153/549 (27%), Positives = 258/549 (46%), Gaps = 80/549 (14%)

Query: 1   MPSNFSPRGINRKNLPNNCLIQSFLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQ 60
           MP N   R +  + L N+   +    L   G+L EA+  ++ +  +G R+ ++    +LQ
Sbjct: 1   MPGNAGFRKV--ETLANS---RDVSVLCKTGRLKEALGIMNTMILQGTRVYSDVFRGLLQ 55

Query: 61  QCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLF 120
           +CA  +SL+ G+ VH  + L     P  +L N L+SMY KCGS  DAR+VFD I      
Sbjct: 56  ECARLRSLEQGREVHAAI-LKSGIQPNRYLENTLLSMYAKCGSLTDARRVFDSI------ 108

Query: 121 SYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFS 180
                                     +R++VSW  MI  +       E  K Y+ ++   
Sbjct: 109 -------------------------RDRNIVSWTAMIEAFVAGNKNLEAFKCYETMKLAG 143

Query: 181 ISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDAR 240
              ++ +F  +L      E L+L ++VH +++  G      + +S+V  YAKCG++S AR
Sbjct: 144 CKPDKVTFVSLLNAFTNPELLQLGQKVHMEIVEAGLELEPRVGTSLVGMYAKCGDISKAR 203

Query: 241 RLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQK 300
            +FD    ++V+TWT +++GYA+ G ++                                
Sbjct: 204 VIFDRLPEKNVVTWTLLIAGYAQQGQVDV------------------------------- 232

Query: 301 ALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLID 360
           ALEL   M    + PN+ TF+S L  C +  +L+HGK+VH ++I++ +     V++SLI 
Sbjct: 233 ALELLETMQQAEVAPNKITFASILQGCTTPAALEHGKKVHRYIIQSGYGRELWVVNSLIT 292

Query: 361 MYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKI 420
           MY KCG L + R++F    ++ + + W  M++   Q G+ ++AI LF  M +  +KPDK+
Sbjct: 293 MYCKCGGLEEARKLFSDLPHR-DVVTWTAMVTGYAQLGFHDEAINLFRRMQQQGIKPDKM 351

Query: 421 TLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQ---LMNQ 477
           T   +L +C+    +QEG    + + H  G   +    + L+ + A+ G  D    + NQ
Sbjct: 352 TFTSVLTSCSSPAFLQEGKRIHQQLVH-AGYNLDVYLQSALVSMYAKCGSMDDASLVFNQ 410

Query: 478 LEKMPYEHDSYLWNA-LHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGK 536
           +     E +   W A + G C  HG      +  DQ+  Q  +        +S+ SA   
Sbjct: 411 MS----ERNVVAWTAIITGCCAQHGRCREALEYFDQMKKQGIKPDKV--TFTSVLSACTH 464

Query: 537 GRLVEKVRQ 545
             LVE+ R+
Sbjct: 465 VGLVEEGRK 473


>gi|255551084|ref|XP_002516590.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223544410|gb|EEF45931.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 517

 Score =  312 bits (800), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 165/466 (35%), Positives = 260/466 (55%), Gaps = 10/466 (2%)

Query: 135 MKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYK-VLRRFS--------ISCNE 185
           M +A  LF  + + +   +N MI     +      + FYK +LR +         I  +E
Sbjct: 36  MDYASFLFKEVIDPNAYLYNAMIRACTHNSMYSLTIDFYKQMLREYRNSQTSEDLILPDE 95

Query: 186 FSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDE 245
           F+F  ++  C +L    L +QVH Q    G  S+++  ++++D Y KC  L DA  LFDE
Sbjct: 96  FTFPFVVKACARLGLHNLGKQVHAQFFKFGKKSHLITENALIDMYTKCDNLLDAHNLFDE 155

Query: 246 TDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELF 305
              R  ++W  ++SG+ +LG M  A  LF+EMP +  VSWT +I+GYTR G    AL++F
Sbjct: 156 MHERGAISWNGIISGHVRLGQMRRARALFDEMPNRTIVSWTAIISGYTRIGSYIDALDVF 215

Query: 306 TRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKC 365
             M I  I P++ +  S L ACA + +L+ GK +H F  R      T + ++LI+MY+KC
Sbjct: 216 REMQIAGIEPDEASIISVLPACAKLGALETGKWIHMFCARNGLLRRTCICNALIEMYTKC 275

Query: 366 GCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVI 425
           GC++   Q+FD    ++  + W+TMI  L  HG   +AI +F  M ++++KP+ IT   +
Sbjct: 276 GCIDQACQLFDQMRGRD-VISWSTMIGGLANHGKVREAIAIFERMKQTNIKPNGITFVGL 334

Query: 426 LNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEH 485
           L+AC H+G  +EGL YF++M  D  I P  EH+  L++LL +AG   Q ++ +EKMP + 
Sbjct: 335 LSACAHAGFWEEGLMYFDTMKKDFHIEPEIEHYGSLVDLLGRAGRLSQALDIVEKMPMKP 394

Query: 486 DSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQ 545
           DS +W +L   CR H NI++    ++ L +  P  +  + LLS+IY+ LGK   V ++R+
Sbjct: 395 DSKIWGSLLSSCRTHCNIEVAVIAMEHLEELEPDDTGNYVLLSNIYADLGKWDDVSRMRK 454

Query: 546 LINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLA 591
           L+  ++ KK    S IE+ N    F   D   P    ++ +LE LA
Sbjct: 455 LVRSKRMKKTPGCSLIEVNNVAQEFVSGDDSKPYSKEIFWLLELLA 500



 Score =  161 bits (408), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 106/381 (27%), Positives = 178/381 (46%), Gaps = 38/381 (9%)

Query: 50  LPAE-TLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDAR 108
           LP E T  F+++ CA      LGK+VH       +K+      N LI MY KC + +DA 
Sbjct: 92  LPDEFTFPFVVKACARLGLHNLGKQVHAQFFKFGKKS-HLITENALIDMYTKCDNLLDAH 150

Query: 109 KVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEE 168
            +FD++  +   S+N ++SG+  LG M+ AR LFD M  R +VSW  +I GY + G+  +
Sbjct: 151 NLFDEMHERGAISWNGIISGHVRLGQMRRARALFDEMPNRTIVSWTAIISGYTRIGSYID 210

Query: 169 GLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVD 228
            L  ++ ++   I  +E S   +L  C KL  L+  + +H      G L    I +++++
Sbjct: 211 ALDVFREMQIAGIEPDEASIISVLPACAKLGALETGKWIHMFCARNGLLRRTCICNALIE 270

Query: 229 AYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTL 288
            Y KCG +  A +LFD+   RDV++W+TM+ G A  G +  A  +F  M + N       
Sbjct: 271 MYTKCGCIDQACQLFDQMRGRDVISWSTMIGGLANHGKVREAIAIFERMKQTN------- 323

Query: 289 IAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNF 348
                                   I+PN  TF   L ACA     + G  ++   ++ +F
Sbjct: 324 ------------------------IKPNGITFVGLLSACAHAGFWEEG-LMYFDTMKKDF 358

Query: 349 RSNTIV--MSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRL 406
                +    SL+D+  + G L+    + +    K +S +W +++S+   H   E A+  
Sbjct: 359 HIEPEIEHYGSLVDLLGRAGRLSQALDIVEKMPMKPDSKIWGSLLSSCRTHCNIEVAVIA 418

Query: 407 FHDMVRSSVKPDKITLAVILN 427
              +    ++PD     V+L+
Sbjct: 419 MEHL--EELEPDDTGNYVLLS 437



 Score = 89.0 bits (219), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 80/322 (24%), Positives = 133/322 (41%), Gaps = 47/322 (14%)

Query: 255 TTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILR-- 312
           T M+    +  DM+ AS LF E+ + N   +  +I   T N +    ++ + +M  LR  
Sbjct: 24  TKMIDVCDRNEDMDYASFLFKEVIDPNAYLYNAMIRACTHNSMYSLTIDFYKQM--LREY 81

Query: 313 ---------IRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYS 363
                    I P++ TF   + ACA +     GKQVH    +   +S+ I  ++LIDMY+
Sbjct: 82  RNSQTSEDLILPDEFTFPFVVKACARLGLHNLGKQVHAQFFKFGKKSHLITENALIDMYT 141

Query: 364 KCGCLNDGRQVFD----------------------------LTDNKENSML--WNTMISA 393
           KC  L D   +FD                            L D   N  +  W  +IS 
Sbjct: 142 KCDNLLDAHNLFDEMHERGAISWNGIISGHVRLGQMRRARALFDEMPNRTIVSWTAIISG 201

Query: 394 LTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIP 453
            T+ G    A+ +F +M  + ++PD+ ++  +L AC   G ++ G  +        G++ 
Sbjct: 202 YTRIGSYIDALDVFREMQIAGIEPDEASIISVLPACAKLGALETG-KWIHMFCARNGLLR 260

Query: 454 NQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQL 513
                  LIE+  + GC DQ     ++M    D   W+ + G    HG +     + +++
Sbjct: 261 RTCICNALIEMYTKCGCIDQACQLFDQM-RGRDVISWSTMIGGLANHGKVREAIAIFERM 319

Query: 514 IDQN--PQSSATHGLLSSIYSA 533
              N  P      GLLS+   A
Sbjct: 320 KQTNIKPNGITFVGLLSACAHA 341



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 46/175 (26%), Positives = 95/175 (54%), Gaps = 16/175 (9%)

Query: 15  LPNNCLIQSFLSLISK-GQLSEAISSLDLLAQ---RGIRLPAETLAFILQQCAESKSLKL 70
           +PN  ++ S+ ++IS   ++   I +LD+  +    GI     ++  +L  CA+  +L+ 
Sbjct: 187 MPNRTIV-SWTAIISGYTRIGSYIDALDVFREMQIAGIEPDEASIISVLPACAKLGALET 245

Query: 71  GKRVHLHLK---LTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLS 127
           GK +H+      L +R    T + N LI MY KCG    A ++FD++  +++ S++ M+ 
Sbjct: 246 GKWIHMFCARNGLLRR----TCICNALIEMYTKCGCIDQACQLFDQMRGRDVISWSTMIG 301

Query: 128 GYANLGMMKHARNLFDNMAERDV----VSWNTMIIGYAKSGAVEEGLKFYKVLRR 178
           G AN G ++ A  +F+ M + ++    +++  ++   A +G  EEGL ++  +++
Sbjct: 302 GLANHGKVREAIAIFERMKQTNIKPNGITFVGLLSACAHAGFWEEGLMYFDTMKK 356


>gi|357469751|ref|XP_003605160.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355506215|gb|AES87357.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1026

 Score =  312 bits (800), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 153/477 (32%), Positives = 269/477 (56%), Gaps = 1/477 (0%)

Query: 118 NLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLR 177
           ++F +N  ++   + G +  A ++F+    RD+V+WN+MI G  K G   E +K YK + 
Sbjct: 192 DIFVHNASITMLLSCGELSVAYDVFNKSRVRDLVTWNSMITGCVKRGLAIEAIKIYKEME 251

Query: 178 RFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELS 237
              +  NE +  G+++ C ++++L L ++ H  +   G    + ++++++D Y KCGEL 
Sbjct: 252 AEKVRPNEITMIGMISSCSQVQDLNLGKEFHCYIKEHGLEFTIPLTNALMDMYVKCGELL 311

Query: 238 DARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGL 297
            AR LFD    + +++WTTMV GYA+ G ++ A ++  ++PEK+ V W  +I+G  +   
Sbjct: 312 TARVLFDNMAQKTLVSWTTMVLGYARFGFLDVAREILYKIPEKSVVPWNAIISGCVQAKQ 371

Query: 298 GQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSS 357
           G++AL LF  M I  I P++ T  +CL AC+ + +L  G  +H ++ R     +  + ++
Sbjct: 372 GKEALALFHEMQIRTIEPDKVTMVNCLSACSQLGALDVGIWIHHYIERHKLSIDVALGTA 431

Query: 358 LIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKP 417
           L+DMY+KCG +    QVF+    + N + W  +I  L  HG  + A+  F  M+   + P
Sbjct: 432 LVDMYAKCGNIARALQVFEEIPQR-NCLTWTAVICGLALHGNAQDALSYFSKMIHIGIVP 490

Query: 418 DKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQ 477
           D+IT   +L+AC H GLV+EG  YF  M+    + P  +H++C+++LL +AG  ++    
Sbjct: 491 DEITFLGVLSACCHGGLVEEGRKYFSEMSSKFNVSPKLKHYSCMVDLLGRAGHLEEAEEL 550

Query: 478 LEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKG 537
           ++ MP   D+ +  AL   CR++GN+ +G +   +L++ +PQ S  + LL+S+YS     
Sbjct: 551 VKNMPMAADAAVLGALFFACRVYGNVQIGERTAFKLLEIDPQDSGNYVLLASMYSEAKMW 610

Query: 538 RLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQM 594
           +     R+L+N++  +K    S +EI   VH F V D  HP  + +Y  L  L  Q+
Sbjct: 611 KEARSARKLMNDKGVEKTPGCSLVEINGIVHEFVVRDVSHPQSEWIYECLVTLTKQL 667



 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 105/415 (25%), Positives = 178/415 (42%), Gaps = 74/415 (17%)

Query: 28  ISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPT 87
           + +G   EAI     +    +R    T+  ++  C++ + L LGK  H ++K       T
Sbjct: 235 VKRGLAIEAIKIYKEMEAEKVRPNEITMIGMISSCSQVQDLNLGKEFHCYIK-EHGLEFT 293

Query: 88  TFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAE 147
             L+N L+ MY KCG  + AR +FD +  K L S+  M+ GYA  G +  AR +   + E
Sbjct: 294 IPLTNALMDMYVKCGELLTARVLFDNMAQKTLVSWTTMVLGYARFGFLDVAREILYKIPE 353

Query: 148 RDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQV 207
           + VV WN +I G  ++   +E L  +  ++  +I  ++ +    L+ C +L  L +   +
Sbjct: 354 KSVVPWNAIISGCVQAKQGKEALALFHEMQIRTIEPDKVTMVNCLSACSQLGALDVGIWI 413

Query: 208 HGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDM 267
           H  +       +V + +++VD YAKCG ++ A ++F+E   R+ LTWT ++ G A  G+ 
Sbjct: 414 HHYIERHKLSIDVALGTALVDMYAKCGNIARALQVFEEIPQRNCLTWTAVICGLALHGN- 472

Query: 268 ESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCAC 327
                                          Q AL  F++M+ + I P++ TF   L AC
Sbjct: 473 ------------------------------AQDALSYFSKMIHIGIVPDEITFLGVLSAC 502

Query: 328 ASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSML- 386
                  HG                             G + +GR+ F    +K N    
Sbjct: 503 C------HG-----------------------------GLVEEGRKYFSEMSSKFNVSPK 527

Query: 387 ---WNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEG 438
              ++ M+  L + G+ E+A  L  +M  ++   D   L  +  AC   G VQ G
Sbjct: 528 LKHYSCMVDLLGRAGHLEEAEELVKNMPMAA---DAAVLGALFFACRVYGNVQIG 579



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 120/504 (23%), Positives = 220/504 (43%), Gaps = 82/504 (16%)

Query: 92  NHLISMYFKCGSDVDARKVFDKIP----VKNLFSYNNMLS--GYANLGMMKHARNLFDNM 145
           N L+S+  +C S V  +++  ++     ++N F+ + +++    +    + +   +   +
Sbjct: 58  NPLLSILERCKSLVQLKQIQAQMVSTGLIENGFAASRLVAFCALSESKELDYCTRILYRI 117

Query: 146 AERDVVSWNTMIIGYAKSGAVEEGLKFYK-VLRRFSISCNEFSFAGILTICVKLEELKLT 204
            E +V SWN  I GY +SG +E G   YK +L   ++  +  ++  +L  C       L 
Sbjct: 118 KELNVFSWNAAIRGYVESGDIEGGFMLYKRMLLGGTLKPDNHTYPLLLKGCCGQYSSCLG 177

Query: 205 RQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKL 264
             V G VL  GF  ++ + ++ +     CGELS A  +F+++  RD++TW +M++G  K 
Sbjct: 178 LGVLGHVLKFGFECDIFVHNASITMLLSCGELSVAYDVFNKSRVRDLVTWNSMITGCVK- 236

Query: 265 GDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCL 324
                                          GL  +A++++  M   ++RPN+ T    +
Sbjct: 237 ------------------------------RGLAIEAIKIYKEMEAEKVRPNEITMIGMI 266

Query: 325 CACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFD-------- 376
            +C+ +  L  GK+ H ++          + ++L+DMY KCG L   R +FD        
Sbjct: 267 SSCSQVQDLNLGKEFHCYIKEHGLEFTIPLTNALMDMYVKCGELLTARVLFDNMAQKTLV 326

Query: 377 ---------------------LTDNKENSML-WNTMISALTQHGYDEQAIRLFHDMVRSS 414
                                L    E S++ WN +IS   Q    ++A+ LFH+M   +
Sbjct: 327 SWTTMVLGYARFGFLDVAREILYKIPEKSVVPWNAIISGCVQAKQGKEALALFHEMQIRT 386

Query: 415 VKPDKITLAVILNACTHSGLVQEGLT---YFESMTHDLGIIPNQEHHACLIELLAQAGCS 471
           ++PDK+T+   L+AC+  G +  G+    Y E   H L I  +      L+++ A+ G  
Sbjct: 387 IEPDKVTMVNCLSACSQLGALDVGIWIHHYIER--HKLSI--DVALGTALVDMYAKCGNI 442

Query: 472 DQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQN--PQSSATHGLLSS 529
            + +   E++P + +   W A+     +HGN         ++I     P      G+L  
Sbjct: 443 ARALQVFEEIP-QRNCLTWTAVICGLALHGNAQDALSYFSKMIHIGIVPDEITFLGVL-- 499

Query: 530 IYSALGKGRLVEKVRQLINERQFK 553
             SA   G LVE+ R+  +E   K
Sbjct: 500 --SACCHGGLVEEGRKYFSEMSSK 521


>gi|297739711|emb|CBI29893.3| unnamed protein product [Vitis vinifera]
          Length = 784

 Score =  312 bits (800), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 168/553 (30%), Positives = 292/553 (52%), Gaps = 66/553 (11%)

Query: 46  RGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDV 105
           +G+ +  +    +L +C    +++ G+RVH H+  T  + P  +L   LI +Y KC    
Sbjct: 4   QGLEVEFQGYDSVLTECISQTAIREGQRVHAHMIKTCYEPPV-YLRTRLIVLYNKCRCLG 62

Query: 106 DARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGA 165
           DAR+V D++P                               ER+VVSW  MI GY++ G 
Sbjct: 63  DARRVLDEMP-------------------------------ERNVVSWTAMISGYSQRGY 91

Query: 166 VEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSS 225
             E L  +  +     + NEF+FA +LT C      +L RQ+H  V+ T F S++ + SS
Sbjct: 92  ASEALHLFVEMLMSGTAPNEFTFATVLTSCTSSSGFQLGRQIHSLVIKTSFESHIFVGSS 151

Query: 226 IVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSW 285
           ++D YAK G++ +                               A ++F+ +PE++ VS 
Sbjct: 152 LLDMYAKAGKICE-------------------------------ARRVFDGLPERDVVSC 180

Query: 286 TTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIR 345
           T +I+GY + GL ++AL+LF R+    +R N  T++S L A + + +L HG+QVH  ++R
Sbjct: 181 TAIISGYAQLGLDEEALDLFRRLQREGMRSNYVTYASVLTALSGLAALDHGRQVHSHVLR 240

Query: 346 TNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIR 405
                  ++ +SLIDMYSKCG L   R++FD    +   + WN M+   ++HG   +A+ 
Sbjct: 241 AKLPFYVVLQNSLIDMYSKCGSLTYSRRIFDSMPER-TVISWNAMLVGYSKHGLGREAVE 299

Query: 406 LFHDMVRSS-VKPDKITLAVILNACTHSGLVQEGL-TYFESMTHDLGIIPNQEHHACLIE 463
           LF  M   + VKPD +T   +L+ C+H G+   GL  ++E +    G  P  EH+ C+++
Sbjct: 300 LFKLMKEENKVKPDSVTFLAVLSGCSHGGMEDRGLEIFYEMVNQKDGFEPEIEHYGCVVD 359

Query: 464 LLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSAT 523
           L  +AG  ++    ++KMP+E  + +W +L G CR+H N+ +G  V  +L++   +++  
Sbjct: 360 LFGRAGRVEEAFEFIKKMPFEPTAAIWGSLLGACRVHQNVHIGEFVARRLLEIESENAGN 419

Query: 524 HGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVL 583
           + +LS++Y++ G+   V  VR+L+ E+   KE   SWIE++  +H F  SD  HP ++ +
Sbjct: 420 YVILSNLYASAGRWDDVRTVRELMKEKAVIKEPGRSWIELDQTLHTFHASDRSHPRKEEV 479

Query: 584 YSVLEQLAGQMGE 596
           ++ + +L+ ++ E
Sbjct: 480 FAKVRELSIKIKE 492



 Score =  135 bits (339), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 92/299 (30%), Positives = 147/299 (49%), Gaps = 43/299 (14%)

Query: 21  IQSFLSLIS----KGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVH- 75
           + S+ ++IS    +G  SEA+     +   G      T A +L  C  S   +LG+++H 
Sbjct: 76  VVSWTAMISGYSQRGYASEALHLFVEMLMSGTAPNEFTFATVLTSCTSSSGFQLGRQIHS 135

Query: 76  LHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMM 135
           L +K       T+F S+                          +F  +++L  YA  G +
Sbjct: 136 LVIK-------TSFESH--------------------------IFVGSSLLDMYAKAGKI 162

Query: 136 KHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTIC 195
             AR +FD + ERDVVS   +I GYA+ G  EE L  ++ L+R  +  N  ++A +LT  
Sbjct: 163 CEARRVFDGLPERDVVSCTAIISGYAQLGLDEEALDLFRRLQREGMRSNYVTYASVLTAL 222

Query: 196 VKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWT 255
             L  L   RQVH  VL       VV+ +S++D Y+KCG L+ +RR+FD    R V++W 
Sbjct: 223 SGLAALDHGRQVHSHVLRAKLPFYVVLQNSLIDMYSKCGSLTYSRRIFDSMPERTVISWN 282

Query: 256 TMVSGYAKLGDMESASKLFNEMPEKN-----PVSWTTLIAGYTRNGLGQKALELFTRMM 309
            M+ GY+K G    A +LF  M E+N      V++  +++G +  G+  + LE+F  M+
Sbjct: 283 AMLVGYSKHGLGREAVELFKLMKEENKVKPDSVTFLAVLSGCSHGGMEDRGLEIFYEMV 341


>gi|449527343|ref|XP_004170671.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g24000, mitochondrial-like [Cucumis sativus]
          Length = 677

 Score =  312 bits (800), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 180/547 (32%), Positives = 286/547 (52%), Gaps = 67/547 (12%)

Query: 51  PAETL-AFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARK 109
           P  TL + +L +C   + LK G+ +H H++ +  +     L N +++MY KCGS      
Sbjct: 103 PERTLYSKMLNKCTYLRKLKQGRAIHAHIQSSTFEDDLVLL-NFILNMYAKCGS------ 155

Query: 110 VFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEG 169
                                    ++ A++LFD M  +D+VSW  +I GY++SG   E 
Sbjct: 156 -------------------------LEEAQDLFDKMPTKDMVSWTVLISGYSQSGQASEA 190

Query: 170 LKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDA 229
           L  +  +       NEF+ + +L            RQ+H   L  G+  NV + SS++D 
Sbjct: 191 LALFPKMLHLGFQPNEFTLSSLLKASGTGPSDHHGRQLHAFSLKYGYDMNVHVGSSLLDM 250

Query: 230 YAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLI 289
           YA+                     W            M  A  +FN +  KN VSW  LI
Sbjct: 251 YAR---------------------W----------AHMREAKVIFNSLAAKNVVSWNALI 279

Query: 290 AGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFR 349
           AG+ R G G+  + LF +M+     P   T+SS L ACAS  SL+ GK VH  +I++  +
Sbjct: 280 AGHARKGEGEHVMRLFXQMLRQGFEPTHFTYSSVL-ACASSGSLEQGKWVHAHVIKSGGQ 338

Query: 350 SNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHD 409
               + ++LIDMY+K G + D ++VF     K++ + WN++IS   QHG   +A++LF  
Sbjct: 339 PIAYIGNTLIDMYAKSGSIKDAKKVFRRL-VKQDIVSWNSIISGYAQHGLGAEALQLFEQ 397

Query: 410 MVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAG 469
           M+++ V+P++IT   +L AC+HSGL+ EG  YFE M     I     HH  +++LL +AG
Sbjct: 398 MLKAKVQPNEITFLSVLTACSHSGLLDEGQYYFELMKKH-KIEAQVAHHVTVVDLLGRAG 456

Query: 470 CSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSS 529
             ++    +E+MP +  + +W AL G CR+H N+D+G    +Q+ + +P  S  H LLS+
Sbjct: 457 RLNEANKFIEEMPIKPTAAVWGALLGACRMHKNMDLGVYAAEQIFELDPHDSGPHVLLSN 516

Query: 530 IYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQ 589
           IY++ G+     KVR+++ E   KKE A SW+EIEN+VH F  +D  HPMR+ +  + E+
Sbjct: 517 IYASAGRLSDAAKVRKMMKESGVKKEPACSWVEIENEVHVFVANDDSHPMREEIQRMWEK 576

Query: 590 LAGQMGE 596
           ++G++ E
Sbjct: 577 ISGKIKE 583



 Score =  112 bits (281), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 79/367 (21%), Positives = 155/367 (42%), Gaps = 64/367 (17%)

Query: 31  GQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFL 90
           GQ SEA++    +   G +    TL+ +L+      S   G+++H    L         +
Sbjct: 185 GQASEALALFPKMLHLGFQPNEFTLSSLLKASGTGPSDHHGRQLHA-FSLKYGYDMNVHV 243

Query: 91  SNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDV 150
            + L+ MY +     +A+ +F+ +  KN+ S+N +++G+A  G  +H   LF  M     
Sbjct: 244 GSSLLDMYARWAHMREAKVIFNSLAAKNVVSWNALIAGHARKGEGEHVMRLFXQML---- 299

Query: 151 VSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQ 210
                                      R       F+++ +L  C     L+  + VH  
Sbjct: 300 ---------------------------RQGFEPTHFTYSSVLA-CASSGSLEQGKWVHAH 331

Query: 211 VLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESA 270
           V+ +G      I ++++D YAK G + DA+++F     +D+++W +++SGYA+       
Sbjct: 332 VIKSGGQPIAYIGNTLIDMYAKSGSIKDAKKVFRRLVKQDIVSWNSIISGYAQ------- 384

Query: 271 SKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASI 330
                                   +GLG +AL+LF +M+  +++PN+ TF S L AC+  
Sbjct: 385 ------------------------HGLGAEALQLFEQMLKAKVQPNEITFLSVLTACSHS 420

Query: 331 VSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTM 390
             L  G+     + +    +      +++D+  + G LN+  +  +    K  + +W  +
Sbjct: 421 GLLDEGQYYFELMKKHKIEAQVAHHVTVVDLLGRAGRLNEANKFIEEMPIKPTAAVWGAL 480

Query: 391 ISALTQH 397
           + A   H
Sbjct: 481 LGACRMH 487


>gi|296088012|emb|CBI35295.3| unnamed protein product [Vitis vinifera]
          Length = 645

 Score =  312 bits (800), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 177/569 (31%), Positives = 286/569 (50%), Gaps = 65/569 (11%)

Query: 58  ILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVK 117
           +L+ C +SKSL   K++H H         ++ L + L  +Y  C   V AR+        
Sbjct: 14  LLEACIQSKSLTEAKKIHQHFLKNTSNADSSVL-HKLTRLYLSCNQVVLARR-------- 64

Query: 118 NLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLR 177
                                  LFD +    V+ WN +I  YA +G  +  +  Y  + 
Sbjct: 65  -----------------------LFDEIPNPSVILWNQIIRAYAWNGPFDGAIDLYHSML 101

Query: 178 RFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELS 237
              +  N++++  +L  C  L  ++   ++H    + G  S+V + +++VD YAKCG L 
Sbjct: 102 HLGVRPNKYTYPFVLKACSGLLAIEDGVEIHSHAKMFGLESDVFVCTALVDFYAKCGILV 161

Query: 238 DARRLFDETDARDVLTWTTMVSGYAKLGDMESA--------------------------- 270
           +A+RLF     RDV+ W  M++G +  G  + A                           
Sbjct: 162 EAQRLFSSMSHRDVVAWNAMIAGCSLYGLCDDAVQLIMQMQEEGICPNSSTIVGVLPTCQ 221

Query: 271 -----SKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLC 325
                 K+F+ M  +N VSW+ +I GY  +   ++AL++F  M +  I P+  T    L 
Sbjct: 222 CLLYARKIFDVMGVRNEVSWSAMIGGYVASDCMKEALDIFRMMQLSGIDPDLTTMLGVLP 281

Query: 326 ACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSM 385
           AC+ + +L+HG   HG+LI   F ++T++ ++LIDMYSKCG ++  R+VF+  D + + +
Sbjct: 282 ACSHLAALQHGFCSHGYLIVRGFATDTLICNALIDMYSKCGKISFAREVFNRMD-RHDIV 340

Query: 386 LWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESM 445
            WN MI     HG   +A+ LFHD++   +KPD IT   +L++C+HSGLV EG  +F++M
Sbjct: 341 SWNAMIIGYGIHGLGMEALGLFHDLLALGLKPDDITFICLLSSCSHSGLVMEGRLWFDAM 400

Query: 446 THDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDM 505
           + D  I+P  EH  C++++L +AG  D+  + +  MP+E D  +W+AL   CRIH NI++
Sbjct: 401 SRDFSIVPRMEHCICMVDILGRAGLIDEAHHFIRNMPFEPDVRIWSALLSACRIHKNIEL 460

Query: 506 GRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIEN 565
           G +V  ++    P+S+    LLS+IYSA G+      +R    +   KK    SWIEI  
Sbjct: 461 GEEVSKKIQSLGPESTGNFVLLSNIYSAAGRWDDAAHIRITQKDWGLKKIPGCSWIEING 520

Query: 566 KVHAFSVSDSLHPMRDVLYSVLEQLAGQM 594
            VHAF   D  H     +   LE+L  +M
Sbjct: 521 IVHAFVGGDQSHLQLSQINRKLEELLVEM 549



 Score =  135 bits (339), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 97/423 (22%), Positives = 186/423 (43%), Gaps = 76/423 (17%)

Query: 15  LPNNCLI---QSFLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLG 71
           +PN  +I   Q   +    G    AI     +   G+R    T  F+L+ C+   +++ G
Sbjct: 69  IPNPSVILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACSGLLAIEDG 128

Query: 72  KRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYAN 131
             +H H K+   ++   F+   L+  Y KCG  V+A+++F  +  +++ ++N M++G + 
Sbjct: 129 VEIHSHAKMFGLES-DVFVCTALVDFYAKCGILVEAQRLFSSMSHRDVVAWNAMIAGCSL 187

Query: 132 LGM--------------------------------MKHARNLFDNMAERDVVSWNTMIIG 159
            G+                                + +AR +FD M  R+ VSW+ MI G
Sbjct: 188 YGLCDDAVQLIMQMQEEGICPNSSTIVGVLPTCQCLLYARKIFDVMGVRNEVSWSAMIGG 247

Query: 160 YAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSN 219
           Y  S  ++E L  +++++   I  +  +  G+L  C  L  L+     HG ++V GF ++
Sbjct: 248 YVASDCMKEALDIFRMMQLSGIDPDLTTMLGVLPACSHLAALQHGFCSHGYLIVRGFATD 307

Query: 220 VVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPE 279
            +I ++++D Y+KCG++S AR +F+  D  D+++W  M                      
Sbjct: 308 TLICNALIDMYSKCGKISFAREVFNRMDRHDIVSWNAM---------------------- 345

Query: 280 KNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQV 339
                    I GY  +GLG +AL LF  ++ L ++P+  TF   L +C+    +  G+  
Sbjct: 346 ---------IIGYGIHGLGMEALGLFHDLLALGLKPDDITFICLLSSCSHSGLVMEGR-- 394

Query: 340 HGFLIRTNFRSNTIVMS-----SLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISAL 394
                    R  +IV        ++D+  + G +++          + +  +W+ ++SA 
Sbjct: 395 --LWFDAMSRDFSIVPRMEHCICMVDILGRAGLIDEAHHFIRNMPFEPDVRIWSALLSAC 452

Query: 395 TQH 397
             H
Sbjct: 453 RIH 455



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 59/252 (23%), Positives = 116/252 (46%), Gaps = 35/252 (13%)

Query: 178 RFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELS 237
           RF +  N   +  +L  C++ + L   +++H   L     ++  +   +   Y  C ++ 
Sbjct: 4   RFEVKNN---YLHLLEACIQSKSLTEAKKIHQHFLKNTSNADSSVLHKLTRLYLSCNQVV 60

Query: 238 DARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGL 297
            ARRLFDE     V+ W  ++  YA                      W         NG 
Sbjct: 61  LARRLFDEIPNPSVILWNQIIRAYA----------------------W---------NGP 89

Query: 298 GQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSS 357
              A++L+  M+ L +RPN++T+   L AC+ +++++ G ++H         S+  V ++
Sbjct: 90  FDGAIDLYHSMLHLGVRPNKYTYPFVLKACSGLLAIEDGVEIHSHAKMFGLESDVFVCTA 149

Query: 358 LIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKP 417
           L+D Y+KCG L + +++F    +++  + WN MI+  + +G  + A++L   M    + P
Sbjct: 150 LVDFYAKCGILVEAQRLFSSMSHRD-VVAWNAMIAGCSLYGLCDDAVQLIMQMQEEGICP 208

Query: 418 DKITLAVILNAC 429
           +  T+  +L  C
Sbjct: 209 NSSTIVGVLPTC 220


>gi|449463631|ref|XP_004149535.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Cucumis sativus]
          Length = 741

 Score =  312 bits (800), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 169/502 (33%), Positives = 282/502 (56%), Gaps = 24/502 (4%)

Query: 92  NHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVV 151
           N ++  Y   G    A   F KIP  N+ S+  MLSG+A+ G M  ARNLF+ M  +++V
Sbjct: 206 NLMVDGYVGVGDLDSAWMFFKKIPTPNVVSWVTMLSGFAHYGRMTEARNLFNEMPTKNLV 265

Query: 152 SWNTMIIGYAKSGAVEEGLK-FYKVLRRFSIS----CNEFSFAGILTICVKLEELKLTRQ 206
           SWN MI  Y +   +++  K F ++  + S+S     N +   G L    ++  L   + 
Sbjct: 266 SWNAMIGAYVRENQIDDAYKLFMEMPEKDSVSWTAMINGYVRVGKLLQAREILNLMPYKN 325

Query: 207 VHGQV-LVTGFL-------SNVVIS----------SSIVDAYAKCGELSDARRLFDETDA 248
           +  Q  ++ G+L       +N + S          +S++  YA CG   +A RLF E   
Sbjct: 326 IAAQTAMINGYLQSGRMDEANEIFSQISVRDSVCWNSMITGYAHCGRTDEALRLFQEMVC 385

Query: 249 RDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRM 308
           +D+++W TM++ YA+ G M+ A ++FNEM E+N VSW +LI GY +NGL  +AL  F  M
Sbjct: 386 KDMVSWNTMIAAYAQAGQMDKALEMFNEMQERNVVSWNSLITGYVQNGLYFEALNCFILM 445

Query: 309 MILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCL 368
                +P+Q T   CL A A++ +L  G Q+H   I+T F ++  V ++++ MY+K G +
Sbjct: 446 KQQGEKPDQTTIVCCLRASANLAALNVGVQLHHLTIKTGFGNDLFVKNAILTMYAKSGRV 505

Query: 369 NDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNA 428
            +   VF    NK+  + WN++I+    +G  ++A+ LF  M    + PD++T   +L+A
Sbjct: 506 PEAENVFAEIKNKD-VVSWNSLIAGYALNGCGKEAVELFEVMPLRGIIPDEVTFTGLLSA 564

Query: 429 CTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSY 488
           C H G V +GL  F+SMT    I P  EH+AC+I LL + G  ++ +  ++ M     + 
Sbjct: 565 CNHGGFVDQGLNLFKSMTETYSIKPQSEHYACVINLLGRVGRLEEAVEIVQGMKTVSSAK 624

Query: 489 LWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLIN 548
           +W AL   CRIH N+++ +   ++L+   PQ+++ + LLS++++  G+  +VE+VR L+ 
Sbjct: 625 IWGALLWACRIHHNLELAKYSAERLLALEPQNASNYVLLSNMHAEAGRWDMVERVRVLMK 684

Query: 549 ERQFKKEQAISWIEIENKVHAF 570
           E + +K+   SWIEI+N++H F
Sbjct: 685 ENKAEKQPGCSWIEIDNQLHCF 706



 Score =  163 bits (412), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 110/404 (27%), Positives = 197/404 (48%), Gaps = 40/404 (9%)

Query: 66  KSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNM 125
           +S ++ + V + L++T+R   T    N +IS Y K G   +AR++FD +P +NL S+N+M
Sbjct: 27  RSGRIEEAVAVFLQMTERNIVTY---NSMISAYAKNGRIANARELFDLMPQRNLVSWNSM 83

Query: 126 LSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVL-RRFSISCN 184
           ++GY +  +++ A  LFD M +RD+ SW  MI  Y + G +E+  + + +L  +    C 
Sbjct: 84  IAGYLHNELVEDAARLFDRMFKRDIYSWTLMITCYTRIGELEKARELFNLLPDKQDTVCR 143

Query: 185 EFSFAG-----ILTICVKL-EELKLTRQVHGQVLVTGFLS-----------------NVV 221
               AG     +     KL +E+ +   V    +++G+                   NVV
Sbjct: 144 NALIAGYAKKRLFREAKKLFDEMLVKNVVSWNSILSGYTKNGKMQLGLQFFEAMGERNVV 203

Query: 222 ISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKN 281
             + +VD Y   G+L  A   F +    +V++W TM+SG+A  G M  A  LFNEMP KN
Sbjct: 204 SWNLMVDGYVGVGDLDSAWMFFKKIPTPNVVSWVTMLSGFAHYGRMTEARNLFNEMPTKN 263

Query: 282 PVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHG 341
            VSW  +I  Y R      A +LF  M       +  ++++ +     +  L   +++  
Sbjct: 264 LVSWNAMIGAYVRENQIDDAYKLFMEM----PEKDSVSWTAMINGYVRVGKLLQAREILN 319

Query: 342 FLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDE 401
            +   N  + T    ++I+ Y + G +++  ++F     ++ S+ WN+MI+     G  +
Sbjct: 320 LMPYKNIAAQT----AMINGYLQSGRMDEANEIFSQISVRD-SVCWNSMITGYAHCGRTD 374

Query: 402 QAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESM 445
           +A+RLF +M    V  D ++   ++ A   +G + + L  F  M
Sbjct: 375 EALRLFQEM----VCKDMVSWNTMIAAYAQAGQMDKALEMFNEM 414



 Score = 99.8 bits (247), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 82/314 (26%), Positives = 146/314 (46%), Gaps = 22/314 (7%)

Query: 219 NVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMP 278
           N+V  +S++ AYAK G +++AR LFD    R++++W +M++GY     +E A++LF+ M 
Sbjct: 45  NIVTYNSMISAYAKNGRIANARELFDLMPQRNLVSWNSMIAGYLHNELVEDAARLFDRMF 104

Query: 279 EKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQ 338
           +++  SWT +I  YTR G  +KA ELF  +      P++   + C  A  +  + K   +
Sbjct: 105 KRDIYSWTLMITCYTRIGELEKARELFNLL------PDKQD-TVCRNALIAGYAKKRLFR 157

Query: 339 VHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHG 398
               L       N +  +S++  Y+K G +  G Q F+    + N + WN M+      G
Sbjct: 158 EAKKLFDEMLVKNVVSWNSILSGYTKNGKMQLGLQFFEAMGER-NVVSWNLMVDGYVGVG 216

Query: 399 YDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHH 458
             + A   F  +      P+ ++   +L+   H G + E    F  M        N    
Sbjct: 217 DLDSAWMFFKKI----PTPNVVSWVTMLSGFAHYGRMTEARNLFNEMP-----TKNLVSW 267

Query: 459 ACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNAL-HGVCRIHGNIDMGRKVVDQLIDQN 517
             +I    +    D       +MP E DS  W A+ +G  R+ G +   R++++ +  +N
Sbjct: 268 NAMIGAYVRENQIDDAYKLFMEMP-EKDSVSWTAMINGYVRV-GKLLQAREILNLMPYKN 325

Query: 518 --PQSSATHGLLSS 529
              Q++  +G L S
Sbjct: 326 IAAQTAMINGYLQS 339



 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 74/323 (22%), Positives = 158/323 (48%), Gaps = 24/323 (7%)

Query: 231 AKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIA 290
            + G + +A  +F +   R+++T+ +M+S YAK G + +A +LF+ MP++N VSW ++IA
Sbjct: 26  GRSGRIEEAVAVFLQMTERNIVTYNSMISAYAKNGRIANARELFDLMPQRNLVSWNSMIA 85

Query: 291 GYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRS 350
           GY  N L + A  LF RM     + + ++++  +     I  L+  +++   L     + 
Sbjct: 86  GYLHNELVEDAARLFDRM----FKRDIYSWTLMITCYTRIGELEKARELFNLLPD---KQ 138

Query: 351 NTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDM 410
           +T+  ++LI  Y+K     + +++FD    K N + WN+++S  T++G  +  ++ F  M
Sbjct: 139 DTVCRNALIAGYAKKRLFREAKKLFDEMLVK-NVVSWNSILSGYTKNGKMQLGLQFFEAM 197

Query: 411 VRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGC 470
              +V    ++  ++++     G +     +F+ +       PN      ++   A  G 
Sbjct: 198 GERNV----VSWNLMVDGYVGVGDLDSAWMFFKKIP-----TPNVVSWVTMLSGFAHYGR 248

Query: 471 SDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSI 530
             +  N   +MP + +   WNA+ G       ID   K+  ++ +++   S +   + + 
Sbjct: 249 MTEARNLFNEMPTK-NLVSWNAMIGAYVRENQIDDAYKLFMEMPEKD---SVSWTAMING 304

Query: 531 YSALGKGRLVEKVRQLINERQFK 553
           Y  +GK   + + R+++N   +K
Sbjct: 305 YVRVGK---LLQAREILNLMPYK 324



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 51/190 (26%), Positives = 95/190 (50%), Gaps = 9/190 (4%)

Query: 18  NCLIQSFLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLH 77
           N LI  +   +  G   EA++   L+ Q+G +    T+   L+  A   +L +G ++H H
Sbjct: 423 NSLITGY---VQNGLYFEALNCFILMKQQGEKPDQTTIVCCLRASANLAALNVGVQLH-H 478

Query: 78  LKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKH 137
           L +        F+ N +++MY K G   +A  VF +I  K++ S+N++++GYA  G  K 
Sbjct: 479 LTIKTGFGNDLFVKNAILTMYAKSGRVPEAENVFAEIKNKDVVSWNSLIAGYALNGCGKE 538

Query: 138 ARNLFDNMAER----DVVSWNTMIIGYAKSGAVEEGLKFYKVL-RRFSISCNEFSFAGIL 192
           A  LF+ M  R    D V++  ++      G V++GL  +K +   +SI      +A ++
Sbjct: 539 AVELFEVMPLRGIIPDEVTFTGLLSACNHGGFVDQGLNLFKSMTETYSIKPQSEHYACVI 598

Query: 193 TICVKLEELK 202
            +  ++  L+
Sbjct: 599 NLLGRVGRLE 608


>gi|297832654|ref|XP_002884209.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297330049|gb|EFH60468.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 534

 Score =  312 bits (800), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 177/514 (34%), Positives = 281/514 (54%), Gaps = 6/514 (1%)

Query: 90  LSNHLISMYFKCGSDVDARKVFDKIPVKNL----FSYNNMLSGYANLGMMKHARNLFDNM 145
           + N+ I    +  S  + +K+   I V  L    F    M+     LG M +A  LF+ +
Sbjct: 9   VENYFIPFLQRVKSRNEWKKIHACIIVHGLSQSSFMVTKMVDLCDKLGDMDYATRLFNQV 68

Query: 146 AERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISC-NEFSFAGILTICVKLEELKLT 204
           +  +V  +N++I  Y  +    + ++ YK L R +I   + F+F  +   C  L    L 
Sbjct: 69  SNPNVFLYNSIIRAYTHNSLYCDVIRIYKQLLRKTIEFPDRFTFPFMFKSCASLGSCYLG 128

Query: 205 RQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKL 264
           +QVHG +   G   +VV  ++++D Y K  +L DA ++FDE   RDV++W +++SGYA+L
Sbjct: 129 KQVHGHLYKFGPRFHVVTENALIDMYMKFDDLVDAHKVFDEMSERDVISWNSLLSGYARL 188

Query: 265 GDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCL 324
           G M+ A  LF+ M +K  VSWT +I+GYT  G   +A++ F  M +  I P++ +  S L
Sbjct: 189 GQMKKAKGLFHLMIDKTIVSWTAMISGYTGIGCYVEAMDFFREMQLAGIEPDEISLISVL 248

Query: 325 CACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENS 384
            +CA + SL+ GK +H +  R      T V ++LI+MYSKCG L+   Q+F+ T  K+  
Sbjct: 249 PSCAHLGSLELGKWIHMYAERRGLLKQTGVCNALIEMYSKCGMLSQAIQLFEQTKGKD-V 307

Query: 385 MLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFES 444
           + W+TMIS    HG   +A   F +M R+ VKP+ IT   +L+AC+H GL Q+GL YF+ 
Sbjct: 308 ISWSTMISGYAYHGNAHRAFETFIEMQRAKVKPNGITFLGLLSACSHVGLWQQGLKYFDM 367

Query: 445 MTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNID 504
           M  D  I P  EH+ CLI++LA+AG  ++ +   + MP + DS +W +L   CR  GN+D
Sbjct: 368 MRQDYQIEPKIEHYGCLIDVLARAGKLERAVEITKTMPVKPDSKIWGSLLSSCRTKGNLD 427

Query: 505 MGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIE 564
           +    +D L++  P     + LL++IY+ LGK   V ++R++I +   KK    S IE+ 
Sbjct: 428 VALVAMDHLVEVEPDDMGNYVLLANIYADLGKWEDVSRLRKIIRKENMKKTPGCSLIEVN 487

Query: 565 NKVHAFSVSDSLHPMRDVLYSVLEQLAGQMGEDA 598
           N V  F   D+  P    +  VL+       +D 
Sbjct: 488 NIVQEFVAGDNSKPFWTEISLVLQLFTSHQDQDV 521



 Score =  186 bits (472), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 125/428 (29%), Positives = 207/428 (48%), Gaps = 41/428 (9%)

Query: 4   NFSPRGINRKNLPNNCLIQSFLSLISKGQL-SEAISSLDLLAQRGIRLPAE-TLAFILQQ 61
           +++ R  N+ + PN  L  S +   +   L  + I     L ++ I  P   T  F+ + 
Sbjct: 59  DYATRLFNQVSNPNVFLYNSIIRAYTHNSLYCDVIRIYKQLLRKTIEFPDRFTFPFMFKS 118

Query: 62  CAESKSLKLGKRVHLHL-KLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLF 120
           CA   S  LGK+VH HL K   R    T   N LI MY K    VDA KVFD++  +++ 
Sbjct: 119 CASLGSCYLGKQVHGHLYKFGPRFHVVT--ENALIDMYMKFDDLVDAHKVFDEMSERDVI 176

Query: 121 SYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFS 180
           S+N++LSGYA LG MK A+ LF  M ++ +VSW  MI GY   G   E + F++ ++   
Sbjct: 177 SWNSLLSGYARLGQMKKAKGLFHLMIDKTIVSWTAMISGYTGIGCYVEAMDFFREMQLAG 236

Query: 181 ISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDAR 240
           I  +E S   +L  C  L  L+L + +H      G L    + +++++ Y+KCG LS A 
Sbjct: 237 IEPDEISLISVLPSCAHLGSLELGKWIHMYAERRGLLKQTGVCNALIEMYSKCGMLSQAI 296

Query: 241 RLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQK 300
           +LF++T  +DV++W+TM+SGYA  G+                                 +
Sbjct: 297 QLFEQTKGKDVISWSTMISGYAYHGN-------------------------------AHR 325

Query: 301 ALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIV--MSSL 358
           A E F  M   +++PN  TF   L AC+ +   + G +    ++R +++    +     L
Sbjct: 326 AFETFIEMQRAKVKPNGITFLGLLSACSHVGLWQQGLKYFD-MMRQDYQIEPKIEHYGCL 384

Query: 359 IDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPD 418
           ID+ ++ G L    ++      K +S +W +++S+    G  + A+     +V   V+PD
Sbjct: 385 IDVLARAGKLERAVEITKTMPVKPDSKIWGSLLSSCRTKGNLDVALVAMDHLVE--VEPD 442

Query: 419 KITLAVIL 426
            +   V+L
Sbjct: 443 DMGNYVLL 450



 Score = 65.9 bits (159), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 66/267 (24%), Positives = 123/267 (46%), Gaps = 20/267 (7%)

Query: 21  IQSFLSLISK----GQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHL 76
           I S+ ++IS     G   EA+     +   GI     +L  +L  CA   SL+LGK +H+
Sbjct: 206 IVSWTAMISGYTGIGCYVEAMDFFREMQLAGIEPDEISLISVLPSCAHLGSLELGKWIHM 265

Query: 77  HLKLTQRK--TPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGM 134
           +    +R+     T + N LI MY KCG    A ++F++   K++ S++ M+SGYA  G 
Sbjct: 266 Y---AERRGLLKQTGVCNALIEMYSKCGMLSQAIQLFEQTKGKDVISWSTMISGYAYHGN 322

Query: 135 MKHARNLFDNMAERDV----VSWNTMIIGYAKSGAVEEGLKFYKVLRR-FSISCNEFSFA 189
              A   F  M    V    +++  ++   +  G  ++GLK++ ++R+ + I      + 
Sbjct: 323 AHRAFETFIEMQRAKVKPNGITFLGLLSACSHVGLWQQGLKYFDMMRQDYQIEPKIEHYG 382

Query: 190 GILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFD---ET 246
            ++ +  +  +L+   ++   + V     +  I  S++ +    G L  A    D   E 
Sbjct: 383 CLIDVLARAGKLERAVEITKTMPVK---PDSKIWGSLLSSCRTKGNLDVALVAMDHLVEV 439

Query: 247 DARDVLTWTTMVSGYAKLGDMESASKL 273
           +  D+  +  + + YA LG  E  S+L
Sbjct: 440 EPDDMGNYVLLANIYADLGKWEDVSRL 466


>gi|225432514|ref|XP_002277532.1| PREDICTED: pentatricopeptide repeat-containing protein At5g19020,
           mitochondrial [Vitis vinifera]
          Length = 694

 Score =  312 bits (800), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 157/471 (33%), Positives = 270/471 (57%), Gaps = 1/471 (0%)

Query: 90  LSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERD 149
           ++ +L+ MY  C S  +AR +FD+IP +N+ ++N ML+GY+  G++  AR+LF+ +  +D
Sbjct: 221 VATNLVHMYCVCSSLGNARVLFDEIPERNVVTWNVMLNGYSKSGLVDLARDLFERIPAKD 280

Query: 150 VVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHG 209
           VVSW T+I GY +   + E L+ Y+ + R  +  NE     +++ C +   +   +Q HG
Sbjct: 281 VVSWGTIIDGYVQIERLGEALRMYRSMLRTGVGPNEVMIVDLISACGRTMAVSEGQQFHG 340

Query: 210 QVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMES 269
            ++ TGF     I ++I+  YA CGE++ A   F+      V +W  ++SG+ + G +E 
Sbjct: 341 IIVRTGFDCYDFIQATIIHFYAACGEINLAFLQFELGSKDHVSSWNALISGFVRNGMIEQ 400

Query: 270 ASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACAS 329
           A +LF+EMPE++  SW+++I+GY++N     AL+LF  M+   ++PN+ T  S   A A+
Sbjct: 401 ARQLFDEMPERDVFSWSSMISGYSQNEQPDLALQLFHEMVAGGVQPNEITMVSVFSAIAT 460

Query: 330 IVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVF-DLTDNKENSMLWN 388
           + +L  G+  H +++  +   N  + ++LIDMY+KCG +    Q+F ++ D   +   WN
Sbjct: 461 LGTLMEGRWAHEYILSNSIPLNDNLNAALIDMYAKCGSITIALQLFYEIQDRVSSVSPWN 520

Query: 389 TMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHD 448
            +I  L  HG+   +++LF  + R  +KP+ IT   +L+AC H+GLV  G  YF+ M + 
Sbjct: 521 AIICGLAMHGHANVSLKLFSQLQRVRIKPNSITFIGVLSACCHAGLVDTGEKYFKGMKNL 580

Query: 449 LGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRK 508
             I PN +H+ C+I+LL +AG   +    + KMP + D  +W  L   CR HGN+++G +
Sbjct: 581 YNIEPNIKHYGCMIDLLGRAGRLKEAAEMIRKMPMKADVVIWGTLLAACRTHGNVEIGER 640

Query: 509 VVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAIS 559
             + L   +    A   LLS+IY+  G+      VR+ +  ++ KK    S
Sbjct: 641 AAENLAKLDISHGAGRVLLSNIYADAGRWDDAFLVRRAMQSQRMKKSPGCS 691



 Score =  219 bits (559), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 144/512 (28%), Positives = 251/512 (49%), Gaps = 41/512 (8%)

Query: 54  TLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDK 113
           TL   L+ C+   +L  G+++H  L          F+ N LIS Y KC    +AR +FD 
Sbjct: 54  TLVSALKSCSSLLALSQGQQIH-SLVFKSGLLSNIFVKNSLISFYVKCRLISNARSLFDT 112

Query: 114 IPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFY 173
             V +  S N ML+GY   G + +AR+LF+ M  +  VS+ TM++G A++    E +  +
Sbjct: 113 CSVLDPVSCNIMLAGYVKSGSLDNARHLFEKMPIKGCVSYTTMVMGLAQNNCWLEAIGVF 172

Query: 174 KVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKC 233
           K +R   +  NE + A +++    +  +   R +H      G  +  ++++++V  Y  C
Sbjct: 173 KDMRFAGVIPNEVTLASVISAYSHVGGILNCRMLHALSFKLGLEALNIVATNLVHMYCVC 232

Query: 234 GELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYT 293
             L +AR LFDE   R+V+TW  M++GY+K G ++ A  LF  +P K+ VSW T+I GY 
Sbjct: 233 SSLGNARVLFDEIPERNVVTWNVMLNGYSKSGLVDLARDLFERIPAKDVVSWGTIIDGYV 292

Query: 294 RNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTI 353
           +     +AL ++  M+   + PN+      + AC   +++  G+Q HG ++RT F     
Sbjct: 293 QIERLGEALRMYRSMLRTGVGPNEVMIVDLISACGRTMAVSEGQQFHGIIVRTGFDCYDF 352

Query: 354 VMSSLIDMYSKCGCLN-------------------------------DGRQVFDLTDNKE 382
           + +++I  Y+ CG +N                                 RQ+FD    ++
Sbjct: 353 IQATIIHFYAACGEINLAFLQFELGSKDHVSSWNALISGFVRNGMIEQARQLFDEMPERD 412

Query: 383 NSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYF 442
               W++MIS  +Q+   + A++LFH+MV   V+P++IT+  + +A    G + EG    
Sbjct: 413 -VFSWSSMISGYSQNEQPDLALQLFHEMVAGGVQPNEITMVSVFSAIATLGTLMEGRWAH 471

Query: 443 ESMTHDLGIIPNQEHHACLIELLAQAG---CSDQLMNQLEKMPYEHDSYLWNALHGVCRI 499
           E +  +  I  N   +A LI++ A+ G    + QL  +++          WNA+     +
Sbjct: 472 EYILSN-SIPLNDNLNAALIDMYAKCGSITIALQLFYEIQDRVSSVSP--WNAIICGLAM 528

Query: 500 HGNIDMGRKVVDQL--IDQNPQSSATHGLLSS 529
           HG+ ++  K+  QL  +   P S    G+LS+
Sbjct: 529 HGHANVSLKLFSQLQRVRIKPNSITFIGVLSA 560



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 95/365 (26%), Positives = 172/365 (47%), Gaps = 36/365 (9%)

Query: 185 EFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFD 244
           E +    L  C  L  L   +Q+H  V  +G LSN+ + +S++  Y KC  +S+AR LFD
Sbjct: 52  ELTLVSALKSCSSLLALSQGQQIHSLVFKSGLLSNIFVKNSLISFYVKCRLISNARSLFD 111

Query: 245 ETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALEL 304
                D ++   M++GY K G +++A  LF +MP K  VS+TT++ G  +N    +A+ +
Sbjct: 112 TCSVLDPVSCNIMLAGYVKSGSLDNARHLFEKMPIKGCVSYTTMVMGLAQNNCWLEAIGV 171

Query: 305 FTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSK 364
           F  M    + PN+ T +S + A + +  + + + +H    +    +  IV ++L+ MY  
Sbjct: 172 FKDMRFAGVIPNEVTLASVISAYSHVGGILNCRMLHALSFKLGLEALNIVATNLVHMYCV 231

Query: 365 CGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDE----------------------- 401
           C  L + R +FD    + N + WN M++  ++ G  +                       
Sbjct: 232 CSSLGNARVLFDEIPER-NVVTWNVMLNGYSKSGLVDLARDLFERIPAKDVVSWGTIIDG 290

Query: 402 --------QAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIP 453
                   +A+R++  M+R+ V P+++ +  +++AC  +  V EG   F  +    G   
Sbjct: 291 YVQIERLGEALRMYRSMLRTGVGPNEVMIVDLISACGRTMAVSEG-QQFHGIIVRTGFDC 349

Query: 454 NQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNAL-HGVCRIHGNIDMGRKVVDQ 512
                A +I   A  G  +    Q E    +H S  WNAL  G  R +G I+  R++ D+
Sbjct: 350 YDFIQATIIHFYAACGEINLAFLQFELGSKDHVSS-WNALISGFVR-NGMIEQARQLFDE 407

Query: 513 LIDQN 517
           + +++
Sbjct: 408 MPERD 412



 Score =  119 bits (299), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 91/384 (23%), Positives = 165/384 (42%), Gaps = 35/384 (9%)

Query: 32  QLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLS 91
           +L EA+     + + G+      +  ++  C  + ++  G++ H  +  T       F+ 
Sbjct: 296 RLGEALRMYRSMLRTGVGPNEVMIVDLISACGRTMAVSEGQQFHGIIVRTGFDC-YDFIQ 354

Query: 92  NHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVV 151
             +I  Y  CG    A   F+     ++ S+N ++SG+   GM++ AR LFD M ERDV 
Sbjct: 355 ATIIHFYAACGEINLAFLQFELGSKDHVSSWNALISGFVRNGMIEQARQLFDEMPERDVF 414

Query: 152 SWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQV 211
           SW++MI GY+++   +  L+ +  +    +  NE +   + +    L  L   R  H  +
Sbjct: 415 SWSSMISGYSQNEQPDLALQLFHEMVAGGVQPNEITMVSVFSAIATLGTLMEGRWAHEYI 474

Query: 212 LVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDAR--DVLTWTTMVSGYAKLGDMES 269
           L      N  ++++++D YAKCG ++ A +LF E   R   V  W  ++ G A       
Sbjct: 475 LSNSIPLNDNLNAALIDMYAKCGSITIALQLFYEIQDRVSSVSPWNAIICGLAM------ 528

Query: 270 ASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACAS 329
                                    +G    +L+LF+++  +RI+PN  TF   L AC  
Sbjct: 529 -------------------------HGHANVSLKLFSQLQRVRIKPNSITFIGVLSACCH 563

Query: 330 IVSLKHG-KQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWN 388
              +  G K   G     N   N      +ID+  + G L +  ++      K + ++W 
Sbjct: 564 AGLVDTGEKYFKGMKNLYNIEPNIKHYGCMIDLLGRAGRLKEAAEMIRKMPMKADVVIWG 623

Query: 389 TMISALTQHGYDEQAIRLFHDMVR 412
           T+++A   HG  E   R   ++ +
Sbjct: 624 TLLAACRTHGNVEIGERAAENLAK 647


>gi|449433085|ref|XP_004134328.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like [Cucumis sativus]
          Length = 601

 Score =  312 bits (800), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 187/585 (31%), Positives = 291/585 (49%), Gaps = 74/585 (12%)

Query: 9   GINRKNLPNNCLIQSFLSLIS-KGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKS 67
             N+   PN  L  + +   S   Q S+A ++   + + G      T  F+L+ C  +  
Sbjct: 74  AFNQVQYPNVHLYNTMIRAHSHNSQPSQAFATFFAMQRDGHYADNFTFPFLLKVCTGNVW 133

Query: 68  LKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLS 127
           L + + VH  ++     +   F+ N LI  Y KCGS                        
Sbjct: 134 LPVIESVHAQIEKFGFMS-DVFVPNSLIDSYSKCGS------------------------ 168

Query: 128 GYANLGMMKHARNLFDNM-AERDVVSWNTMIIGYAKSGAVEEGLK-FYKVLRRFSISCNE 185
                  +  A+ LF +M A RDVVSWN+MI G AK G  EE  K F ++  +  IS N 
Sbjct: 169 -----CGISAAKKLFVSMGARRDVVSWNSMISGLAKGGLYEEARKVFDEMPEKDGISWN- 222

Query: 186 FSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDE 245
                                                  +++D Y K G++ DA +LFDE
Sbjct: 223 ---------------------------------------TMLDGYVKVGKMDDAFKLFDE 243

Query: 246 TDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELF 305
              R+V++W+TMV GY K GDME A  LF++MP KN VSWT +++G+   GL ++A+ LF
Sbjct: 244 MPERNVVSWSTMVLGYCKAGDMEMARMLFDKMPVKNLVSWTIIVSGFAEKGLAREAISLF 303

Query: 306 TRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKC 365
            +M    ++ +  T  S L ACA    L  G+++H  +   NF+  T + ++L+DMY+KC
Sbjct: 304 DQMEKACLKLDNGTVMSILAACAESGLLGLGEKIHASIKNNNFKCTTEISNALVDMYAKC 363

Query: 366 GCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVI 425
           G LN    VF+   NK+  + WN M+  L  HG+  +A+ LF  M      P+K+T+  +
Sbjct: 364 GRLNIAYDVFNDIKNKD-VVSWNAMLQGLAMHGHGVKALELFKRMKEEGFSPNKVTMIGV 422

Query: 426 LNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEH 485
           L ACTH+GL+ +G+ YF +M  D  ++P  EH+ C+++LL + G  ++ +  +  MP   
Sbjct: 423 LCACTHAGLIDDGIRYFSTMERDYTLVPEVEHYGCMVDLLGRKGRLEEAIRLIRNMPMAP 482

Query: 486 DSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQ 545
           ++ +W  L G CR+H  +++ R+V+D L++  P  S    +LS+IY+A G    V   R 
Sbjct: 483 NAIIWGTLLGACRMHNAVELAREVLDHLVELEPTDSGNFSMLSNIYAAAGDWNCVANTRL 542

Query: 546 LINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQL 590
            +     KK    S IE+ N+VH F+V D  HP  D +Y V+  L
Sbjct: 543 RMRSIGTKKPSGASSIEVNNEVHEFTVFDRSHPKSDNIYQVINGL 587



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 80/341 (23%), Positives = 144/341 (42%), Gaps = 29/341 (8%)

Query: 232 KCGELSDARRLFDETDAR----DVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTT 287
           KC  L+  ++L  +        D+     ++S ++    M  A+  FN++   N   + T
Sbjct: 29  KCTNLNQVKQLHAQILKSNLHVDLFVVPKLISAFSLCRQMLLATNAFNQVQYPNVHLYNT 88

Query: 288 LIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTN 347
           +I  ++ N    +A   F  M       +  TF   L  C   V L   + VH  + +  
Sbjct: 89  MIRAHSHNSQPSQAFATFFAMQRDGHYADNFTFPFLLKVCTGNVWLPVIESVHAQIEKFG 148

Query: 348 FRSNTIVMSSLIDMYSKCGC--LNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIR 405
           F S+  V +SLID YSKCG   ++  +++F     + + + WN+MIS L + G  E+A +
Sbjct: 149 FMSDVFVPNSLIDSYSKCGSCGISAAKKLFVSMGARRDVVSWNSMISGLAKGGLYEEARK 208

Query: 406 LFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELL 465
           +F +M     + D I+   +L+     G + +    F+ M        N    + ++   
Sbjct: 209 VFDEM----PEKDGISWNTMLDGYVKVGKMDDAFKLFDEMPER-----NVVSWSTMVLGY 259

Query: 466 AQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMG--RKVVDQLIDQNPQS--S 521
            +AG  +      +KMP +      N +     + G  + G  R+ +  L DQ  ++   
Sbjct: 260 CKAGDMEMARMLFDKMPVK------NLVSWTIIVSGFAEKGLAREAI-SLFDQMEKACLK 312

Query: 522 ATHGLLSSIYSALGKGRLV---EKVRQLINERQFKKEQAIS 559
             +G + SI +A  +  L+   EK+   I    FK    IS
Sbjct: 313 LDNGTVMSILAACAESGLLGLGEKIHASIKNNNFKCTTEIS 353


>gi|414879404|tpg|DAA56535.1| TPA: pentatricopeptide repeat protein PPR868-14 [Zea mays]
          Length = 544

 Score =  312 bits (800), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 177/514 (34%), Positives = 272/514 (52%), Gaps = 44/514 (8%)

Query: 55  LAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFL-SNHLISMYFKCGSDVDARKVFDK 113
           L  +L+  A S   +LG    LH +  +       L    ++SMY KCG+  DAR+ FD+
Sbjct: 57  LPVLLKAAAASSPAELGLGKSLHAEALKSAFARDLLVGTTIVSMYCKCGALADARRAFDE 116

Query: 114 IPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFY 173
           +P +N+ SYN +L+GYA  G M  A  LF  M     V+W T+I G+A+ G + E  +++
Sbjct: 117 MPDRNVISYNALLAGYAVAGDMDGALALFGGMRSWTHVTWATLIRGFAEKGDMAEARRWF 176

Query: 174 KVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKC 233
                      E +  G+ T                          VV  + +V  Y   
Sbjct: 177 -----------EATPPGMRT--------------------------VVTWTVLVQGYVCA 199

Query: 234 GELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYT 293
           G++  AR +FD   AR+   W++MV+GY K GD E A  +F+ +P +N V+W  LIAGY 
Sbjct: 200 GDMETAREVFDRMPARNAFVWSSMVTGYFKAGDAEEARAVFDRIPTRNLVNWNALIAGYA 259

Query: 294 RNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTI 353
           + G  ++ALE F  M+  R++P++ T +S L ACA + SL+ GK+VH F+ + + R N  
Sbjct: 260 QIGCSEQALEAFHLMLQERVKPDEFTMASLLSACAQLGSLEQGKKVHDFINQEHIRKNHF 319

Query: 354 VMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRS 413
           VM+ LIDMY+KCG L   R +FD    K N   WNTMISAL  HG  ++A+ LF  M RS
Sbjct: 320 VMNGLIDMYAKCGDLAHARYIFDSMRWKNNE-CWNTMISALASHGQSDEALHLFFQMERS 378

Query: 414 SVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQ 473
             KP+ IT+  +L ACTH G V EGL  F  +    G+    EH+ CL++LL +AG   +
Sbjct: 379 GRKPNTITVLAVLGACTHGGFVDEGLQIFNKLD-AYGVEAGVEHYGCLVDLLGRAGKLKE 437

Query: 474 LMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLID----QNPQSSATHGLLSS 529
               +  M  E +  +W +L G CR+H + +M R V ++++         + A + +L++
Sbjct: 438 AYEIVNNMSEEPNEVIWGSLLGACRVHRDAEMSRLVTEEILRLHSFHASSNDAEYIMLAN 497

Query: 530 IYSALGKGRLVEKVRQLINERQFKKEQAISWIEI 563
           I +A  +    E++R+ +  R  +K    S +E+
Sbjct: 498 IMAASERWEQAEQMRRKMARRGVEKTPGCSSLEL 531



 Score = 73.2 bits (178), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 58/204 (28%), Positives = 96/204 (47%), Gaps = 11/204 (5%)

Query: 10  INRKNLPN-NCLIQSFLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSL 68
           I  +NL N N LI  +  +   G   +A+ +  L+ Q  ++    T+A +L  CA+  SL
Sbjct: 243 IPTRNLVNWNALIAGYAQI---GCSEQALEAFHLMLQERVKPDEFTMASLLSACAQLGSL 299

Query: 69  KLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSG 128
           + GK+VH  +   +      F+ N LI MY KCG    AR +FD +  KN   +N M+S 
Sbjct: 300 EQGKKVHDFIN-QEHIRKNHFVMNGLIDMYAKCGDLAHARYIFDSMRWKNNECWNTMISA 358

Query: 129 YANLGMMKHARNLFDNMAERDVVSWNTMII-----GYAKSGAVEEGLKFYKVLRRFSISC 183
            A+ G    A +LF  M ER     NT+ +          G V+EGL+ +  L  + +  
Sbjct: 359 LASHGQSDEALHLFFQM-ERSGRKPNTITVLAVLGACTHGGFVDEGLQIFNKLDAYGVEA 417

Query: 184 NEFSFAGILTICVKLEELKLTRQV 207
               +  ++ +  +  +LK   ++
Sbjct: 418 GVEHYGCLVDLLGRAGKLKEAYEI 441


>gi|297822535|ref|XP_002879150.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297324989|gb|EFH55409.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 872

 Score =  312 bits (799), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 176/549 (32%), Positives = 288/549 (52%), Gaps = 74/549 (13%)

Query: 114 IPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFY 173
           IPV N     ++++ Y   G ++ AR LFD    + VV+WN+MI GYA +G   E L  +
Sbjct: 233 IPVSN-----SLINLYLKCGNVRKARILFDKTEVKSVVTWNSMISGYAANGLDLEALGMF 287

Query: 174 KVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLV-------------------- 213
             +R   +  +E SFA I+ +C  L+EL+ T Q+H  V+                     
Sbjct: 288 YSMRLNHVRLSESSFASIIKLCANLKELRFTEQLHCSVVKYGFVFDQNIRTALMVAYSKC 347

Query: 214 ------------TGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDV----LTW--- 254
                       TGFL NVV  ++++  + +     +A  LF E   + V     T+   
Sbjct: 348 MAMLDALRLFKETGFLGNVVSWTAMISGFLQNDGKEEAVGLFSEMKRKGVRPNEFTYSVI 407

Query: 255 ----------------------------TTMVSGYAKLGDMESASKLFNEMPEKNPVSWT 286
                                       T ++  Y KLG ++ A+K+F+ +  K+ V+W+
Sbjct: 408 LTALPVISPSEVHAQVVKTNYERSSTVGTALLDAYVKLGKVDEAAKVFSGIDNKDIVAWS 467

Query: 287 TLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACA-SIVSLKHGKQVHGFLIR 345
            ++AGY + G  + A+++F+ +    ++PN+ TFSS L  CA +  S+  GKQ HGF I+
Sbjct: 468 AMLAGYAQAGETEAAIKIFSELTKGGVKPNEFTFSSILNVCAATTASMGQGKQFHGFAIK 527

Query: 346 TNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIR 405
           +   S+  V S+L+ MY+K G +    +VF     K+  + WN+MIS   QHG   +A+ 
Sbjct: 528 SRLDSSLCVSSALLTMYAKKGHIESAEEVFKRQREKD-LVSWNSMISGYAQHGQAMKALD 586

Query: 406 LFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELL 465
           +F +M +  VK D +T   +  ACTH+GLV+EG  YF+ M  D  I P +EH++C+++L 
Sbjct: 587 VFKEMKKRKVKMDSVTFIGVFAACTHAGLVEEGEKYFDIMVRDCKIAPTKEHNSCMVDLY 646

Query: 466 AQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHG 525
           ++AG  ++ M  ++ MP    S +W  +   CR+H   ++GR   +++I   P+ SA + 
Sbjct: 647 SRAGQLEKAMKVIDNMPNLAGSTIWRTILAACRVHKKTELGRLAAEKIIAMIPEDSAAYV 706

Query: 526 LLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYS 585
           LLS++Y+  G  +   KVR+L+NER  KKE   SWIE++NK +AF   D  HP++D +Y 
Sbjct: 707 LLSNMYAESGDWQERAKVRKLMNERNVKKEPGYSWIEVKNKTYAFLAGDRSHPLKDQIYM 766

Query: 586 VLEQLAGQM 594
            LE L+ ++
Sbjct: 767 KLEDLSTRL 775



 Score =  169 bits (429), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 120/410 (29%), Positives = 200/410 (48%), Gaps = 70/410 (17%)

Query: 23  SFLSLISKGQLSEAISSLDLLAQ-RGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLT 81
           + +S  ++  L+E + +L +  Q  G +  + T A  L   AE      G +VH  + + 
Sbjct: 168 TLISGYARNSLNEEVLTLFMRMQDEGTQPNSFTFAAALGVLAEEGVGGRGLQVHT-VVVK 226

Query: 82  QRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNL 141
                T  +SN LI++Y KCG+   AR +FDK  VK++ ++N+M+SGYA  G+   A  +
Sbjct: 227 NGLDKTIPVSNSLINLYLKCGNVRKARILFDKTEVKSVVTWNSMISGYAANGLDLEALGM 286

Query: 142 FDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEEL 201
           F +M                               R   +  +E SFA I+ +C  L+EL
Sbjct: 287 FYSM-------------------------------RLNHVRLSESSFASIIKLCANLKEL 315

Query: 202 KLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETD-ARDVLTWTTMVSG 260
           + T Q+H  V+  GF+ +  I ++++ AY+KC  + DA RLF ET    +V++WT M+SG
Sbjct: 316 RFTEQLHCSVVKYGFVFDQNIRTALMVAYSKCMAMLDALRLFKETGFLGNVVSWTAMISG 375

Query: 261 YAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTF 320
           + +    E A  LF+EM  K                                +RPN+ T+
Sbjct: 376 FLQNDGKEEAVGLFSEMKRKG-------------------------------VRPNEFTY 404

Query: 321 SSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDN 380
           S  L A   I       +VH  +++TN+  ++ V ++L+D Y K G +++  +VF   DN
Sbjct: 405 SVILTALPVISP----SEVHAQVVKTNYERSSTVGTALLDAYVKLGKVDEAAKVFSGIDN 460

Query: 381 KENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACT 430
           K+  + W+ M++   Q G  E AI++F ++ +  VKP++ T + ILN C 
Sbjct: 461 KD-IVAWSAMLAGYAQAGETEAAIKIFSELTKGGVKPNEFTFSSILNVCA 509



 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 93/305 (30%), Positives = 156/305 (51%), Gaps = 31/305 (10%)

Query: 124 NMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISC 183
           +++  Y      K  RN+FD M ER+VV+W T+I GYA++   EE L  +  ++      
Sbjct: 137 SLVDTYMKGSNFKDGRNVFDEMKERNVVTWTTLISGYARNSLNEEVLTLFMRMQDEGTQP 196

Query: 184 NEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLF 243
           N F+FA  L +  +        QVH  V+  G    + +S+S+++ Y KCG +  AR LF
Sbjct: 197 NSFTFAAALGVLAEEGVGGRGLQVHTVVVKNGLDKTIPVSNSLINLYLKCGNVRKARILF 256

Query: 244 DETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALE 303
           D+T+ + V+TW +M+SGYA                                NGL  +AL 
Sbjct: 257 DKTEVKSVVTWNSMISGYAA-------------------------------NGLDLEALG 285

Query: 304 LFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYS 363
           +F  M +  +R ++ +F+S +  CA++  L+  +Q+H  +++  F  +  + ++L+  YS
Sbjct: 286 MFYSMRLNHVRLSESSFASIIKLCANLKELRFTEQLHCSVVKYGFVFDQNIRTALMVAYS 345

Query: 364 KCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLA 423
           KC  + D  ++F  T    N + W  MIS   Q+   E+A+ LF +M R  V+P++ T +
Sbjct: 346 KCMAMLDALRLFKETGFLGNVVSWTAMISGFLQNDGKEEAVGLFSEMKRKGVRPNEFTYS 405

Query: 424 VILNA 428
           VIL A
Sbjct: 406 VILTA 410



 Score =  152 bits (384), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 89/304 (29%), Positives = 150/304 (49%), Gaps = 32/304 (10%)

Query: 128 GYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFS 187
           G A+   + +A NLFD   +RD  S+ +++ G+++ G  +E  + +  ++   +  +   
Sbjct: 40  GAASSSRLYYAHNLFDKSPDRDRESYTSLLFGFSRDGRTQEATRLFLNIQHLGMEMDCSI 99

Query: 188 FAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETD 247
           F+ +L +   L +    RQ+H Q +  GFL +V + +S+VD Y K     D R       
Sbjct: 100 FSSVLKVSATLCDELFGRQLHCQCIKFGFLDDVSVGTSLVDTYMKGSNFKDGR------- 152

Query: 248 ARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTR 307
                                    +F+EM E+N V+WTTLI+GY RN L ++ L LF R
Sbjct: 153 ------------------------NVFDEMKERNVVTWTTLISGYARNSLNEEVLTLFMR 188

Query: 308 MMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGC 367
           M     +PN  TF++ L   A       G QVH  +++        V +SLI++Y KCG 
Sbjct: 189 MQDEGTQPNSFTFAAALGVLAEEGVGGRGLQVHTVVVKNGLDKTIPVSNSLINLYLKCGN 248

Query: 368 LNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILN 427
           +   R +FD T+ K + + WN+MIS    +G D +A+ +F+ M  + V+  + + A I+ 
Sbjct: 249 VRKARILFDKTEVK-SVVTWNSMISGYAANGLDLEALGMFYSMRLNHVRLSESSFASIIK 307

Query: 428 ACTH 431
            C +
Sbjct: 308 LCAN 311



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 55/180 (30%), Positives = 90/180 (50%), Gaps = 1/180 (0%)

Query: 260 GYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHT 319
           G A    +  A  LF++ P+++  S+T+L+ G++R+G  Q+A  LF  +  L +  +   
Sbjct: 40  GAASSSRLYYAHNLFDKSPDRDRESYTSLLFGFSRDGRTQEATRLFLNIQHLGMEMDCSI 99

Query: 320 FSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTD 379
           FSS L   A++     G+Q+H   I+  F  +  V +SL+D Y K     DGR VFD   
Sbjct: 100 FSSVLKVSATLCDELFGRQLHCQCIKFGFLDDVSVGTSLVDTYMKGSNFKDGRNVFDEMK 159

Query: 380 NKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGL 439
            + N + W T+IS   ++  +E+ + LF  M     +P+  T A  L      G+   GL
Sbjct: 160 ER-NVVTWTTLISGYARNSLNEEVLTLFMRMQDEGTQPNSFTFAAALGVLAEEGVGGRGL 218


>gi|255551961|ref|XP_002517025.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223543660|gb|EEF45188.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 640

 Score =  312 bits (799), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 165/510 (32%), Positives = 278/510 (54%), Gaps = 19/510 (3%)

Query: 90  LSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERD 149
           + N +I ++ +CG    AR++FD++  ++  S+N+M++GY N G +  AR LFD M ER+
Sbjct: 139 VKNVMIELFMRCGEMGSARQMFDEMEERDAVSWNSMITGYGNNGRVDIARKLFDRMEERN 198

Query: 150 VVSWNTMIIGYAKSGAVEEGLKFY-----KVLRRFSISCNEFSFAGILTICVKLEELKLT 204
           V+SW +MI GY K+G + E    +     K L  + +  + +   G L     L EL   
Sbjct: 199 VISWTSMIQGYVKAGDLLEARVLFERMPEKDLASWKVMVSAYMSVGNLVAARNLFELMPI 258

Query: 205 RQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKL 264
             V           N++IS        K GE+  A+  FD    R+V +W  ++ GY K+
Sbjct: 259 HDVGTW--------NLMISGC-----CKAGEMDAAKEFFDRMQERNVASWVMIIDGYIKV 305

Query: 265 GDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCL 324
           GD+++A  +F++MPEKN V+W+T+I GY + G    +L+L+       I+P++      +
Sbjct: 306 GDVDAARSVFDQMPEKNLVAWSTMIGGYAKTGHPYSSLKLYKTFKEQGIKPDETFALGII 365

Query: 325 CACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENS 384
            AC+ +      + V    +  +   N  V++SLIDMY+KCG +    QVF++ D K+  
Sbjct: 366 SACSQLGVPDTAESVICDFVGPSLFPNLQVVTSLIDMYAKCGNIERAVQVFEMVDQKDLH 425

Query: 385 MLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFES 444
             ++T+I+A   HG  E AI LF +M ++++KPD +    +L AC H GLV EG   F  
Sbjct: 426 -CYSTVITAFANHGLSEDAISLFSEMQKANIKPDGVAFLGVLTACNHGGLVGEGRRLFRQ 484

Query: 445 MTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNID 504
           M  + GI P+++H+AC++++L +AGC ++  + +  MP   ++ +W AL   CR+H N+ 
Sbjct: 485 MIDEYGIQPSEKHYACMVDILGRAGCLEEAHSLICSMPVAPNATVWGALLSACRVHLNVQ 544

Query: 505 MGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIE 564
           +      +L    P +S  + LL +IY+  G+     KVR +I E + +K +  SWIE+ 
Sbjct: 545 LAEAAATELFQIEPNNSGNYVLLFNIYADAGQWDDFSKVRAMIRENRVRKNRGSSWIELG 604

Query: 565 NKVHAFSVSDSLHPMRDVLYSVLEQLAGQM 594
           + +H F + D  H   + ++ +LE L   M
Sbjct: 605 SVIHEFVMGDKSHFDSERIFFMLELLCKDM 634



 Score =  159 bits (402), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 129/526 (24%), Positives = 235/526 (44%), Gaps = 80/526 (15%)

Query: 58  ILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVK 117
           +L+QC   +SLK    +H HL ++     +    N L+ +Y K G+   A K+FD+ P  
Sbjct: 9   LLKQC---RSLKTLTTIHAHLLISGSIASSDLTLNKLLRLYSKFGAVSYAHKLFDETPEP 65

Query: 118 NLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLR 177
           N F                                W  +I G+ ++   E    F+  + 
Sbjct: 66  NSF-------------------------------LWTALIHGFTENNQYENAFAFFIKMH 94

Query: 178 RFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELS 237
           R +I    F+ A +L    +L  +K    V+G  +  G+  ++V+ + +++ + +CGE+ 
Sbjct: 95  RENIVPLNFTIASVLKAVSRLGRIKDGDLVYGLAVRCGYEFDLVVKNVMIELFMRCGEMG 154

Query: 238 DARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGL 297
            AR++FDE + RD ++W +M++GY   G ++ A KLF+ M E+N +SWT++I GY + G 
Sbjct: 155 SARQMFDEMEERDAVSWNSMITGYGNNGRVDIARKLFDRMEERNVISWTSMIQGYVKAGD 214

Query: 298 GQKALELFTRMM-------------------------ILRIRP--NQHTFSSCLCACASI 330
             +A  LF RM                          +  + P  +  T++  +  C   
Sbjct: 215 LLEARVLFERMPEKDLASWKVMVSAYMSVGNLVAARNLFELMPIHDVGTWNLMISGCCKA 274

Query: 331 VSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTM 390
             +   K+   F  R   R N      +ID Y K G ++  R VFD    K N + W+TM
Sbjct: 275 GEMDAAKE---FFDRMQER-NVASWVMIIDGYIKVGDVDAARSVFDQMPEK-NLVAWSTM 329

Query: 391 ISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDL- 449
           I    + G+   +++L+       +KPD+     I++AC+  G+        ES+  D  
Sbjct: 330 IGGYAKTGHPYSSLKLYKTFKEQGIKPDETFALGIISACSQLGVPDTA----ESVICDFV 385

Query: 450 --GIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGR 507
              + PN +    LI++ A+ G  ++ + Q+ +M  + D + ++ +      HG  +   
Sbjct: 386 GPSLFPNLQVVTSLIDMYAKCGNIERAV-QVFEMVDQKDLHCYSTVITAFANHGLSEDAI 444

Query: 508 KVVDQLIDQN--PQSSATHGLLSSIYSA--LGKGRLVEKVRQLINE 549
            +  ++   N  P   A  G+L++      +G+GR +   RQ+I+E
Sbjct: 445 SLFSEMQKANIKPDGVAFLGVLTACNHGGLVGEGRRL--FRQMIDE 488


>gi|297737154|emb|CBI26355.3| unnamed protein product [Vitis vinifera]
          Length = 550

 Score =  312 bits (799), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 183/577 (31%), Positives = 287/577 (49%), Gaps = 83/577 (14%)

Query: 58  ILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVK 117
           I+  C   K+LK  K +H  L +      + F+ N L+ +Y + G+   A KVFD+I   
Sbjct: 8   IIHNC---KTLKSLKSIHARLLIESSVASSEFVINKLLRLYSRFGATDYAHKVFDEITQP 64

Query: 118 NLFSYNNMLSGY-----------------------------------ANLGMMKHARNL- 141
           N + + +++ GY                                   A L   K  + + 
Sbjct: 65  NAYLWTSLIHGYVENRQYDEAFSLFIQMRREPISVLNFTISSVLKALARLTRFKGGQAVY 124

Query: 142 ---FDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKL 198
              FD M E+D+VSWN MI GY  +  V+   KF+                       ++
Sbjct: 125 GFAFDEMCEKDIVSWNMMISGYGNNDRVDIARKFFD----------------------RM 162

Query: 199 EELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMV 258
            E                  NVV  +S++  Y K G++++A+ LFD    +D+ +W  MV
Sbjct: 163 PE-----------------RNVVSWTSMICGYVKAGDMAEAQVLFDSMPVKDLASWNVMV 205

Query: 259 SGYAKLGDMESASK-LFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQ 317
           SGY  +GD  + ++ LF++MP KN V+W+T+I GY RNG   KALELF R     I+P++
Sbjct: 206 SGYMDIGDYTNGARCLFDQMPMKNLVTWSTMIGGYARNGQPLKALELFERFKEQDIKPDE 265

Query: 318 HTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDL 377
                 + AC+ +  +   + +    +  +  S+  V +SLIDMY+KCG +    Q+F++
Sbjct: 266 TFILGIISACSQLGIIDAAESIIHNYVGPSLLSDLRVFTSLIDMYAKCGSIEKALQMFEM 325

Query: 378 TDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQE 437
              K+  + ++TMI+AL  HG    AI LF  M R+++KPD +T   +L AC H GLV E
Sbjct: 326 AHPKD-LLCYSTMIAALANHGLGRDAIFLFDKMQRANIKPDSVTFLGVLTACNHGGLVDE 384

Query: 438 GLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVC 497
           G  YF+ MT + GI P+++H+AC+++LL + GC ++  N +  MP    S +W AL   C
Sbjct: 385 GRKYFKQMTEEFGIQPSEKHYACVVDLLGRVGCLEEAYNLIRNMPIAPHSVVWGALLAAC 444

Query: 498 RIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQA 557
           R+H N+ +      +L    P +S  + LLS+IY+A G+   V KVR  I E + +K + 
Sbjct: 445 RVHCNVQLAEVAAAELFKIEPDNSGNYILLSNIYAAAGRWGSVAKVRAKIREHRVRKNRG 504

Query: 558 ISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQM 594
            SWIE+ + VH F + D  H   D +  +L  L   M
Sbjct: 505 SSWIELSHVVHEFVMGDMSHTDSDSISLILYLLCEDM 541


>gi|195651797|gb|ACG45366.1| pentatricopeptide repeat protein PPR868-14 [Zea mays]
          Length = 544

 Score =  312 bits (799), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 177/514 (34%), Positives = 272/514 (52%), Gaps = 44/514 (8%)

Query: 55  LAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFL-SNHLISMYFKCGSDVDARKVFDK 113
           L  +L+  A S   +LG    LH +  +       L    ++SMY KCG+  DAR+ FD+
Sbjct: 57  LPVLLKAAAASSPTELGLGKSLHAEALKSAFARDLLVGTTIVSMYCKCGALADARRAFDE 116

Query: 114 IPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFY 173
           +P +N+ SYN +L+GYA  G M  A  LF  M     V+W T+I G+A+ G + E  +++
Sbjct: 117 MPDRNVISYNALLAGYAVAGDMDGALALFGGMRSWTHVTWATLIRGFAEKGDMAEARRWF 176

Query: 174 KVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKC 233
                      E +  G+ T                          VV  + +V  Y   
Sbjct: 177 -----------EATPPGMRT--------------------------VVTWTVLVQGYVCA 199

Query: 234 GELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYT 293
           G++  AR +FD   AR+   W++MV+GY K GD E A  +F+ +P +N V+W  LIAGY 
Sbjct: 200 GDMETAREVFDRMPARNAFVWSSMVTGYFKAGDAEEARAVFDRIPTRNLVNWNALIAGYA 259

Query: 294 RNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTI 353
           + G  ++ALE F  M+  R++P++ T +S L ACA + SL+ GK+VH F+ + + R N  
Sbjct: 260 QIGCSEQALEAFHLMLQERVKPDEFTMASLLSACAQLGSLEQGKKVHDFINQEHIRKNHF 319

Query: 354 VMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRS 413
           VM+ LIDMY+KCG L   R +FD    K N   WNTMISAL  HG  ++A+ LF  M RS
Sbjct: 320 VMNGLIDMYAKCGDLAHARYIFDSMRWKNNE-CWNTMISALASHGQSDEALHLFFQMERS 378

Query: 414 SVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQ 473
             KP+ IT+  +L ACTH G V EGL  F  +    G+    EH+ CL++LL +AG   +
Sbjct: 379 GRKPNTITVLAVLGACTHGGFVDEGLQIFNKLD-AYGVGAGVEHYGCLVDLLGRAGKLKE 437

Query: 474 LMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLID----QNPQSSATHGLLSS 529
               +  M  E +  +W +L G CR+H + +M R V ++++         + A + +L++
Sbjct: 438 AYEIVNNMSEEPNEVIWGSLLGACRVHRDAEMSRLVTEEILRLHSFHASSNDAEYIMLAN 497

Query: 530 IYSALGKGRLVEKVRQLINERQFKKEQAISWIEI 563
           I +A  +    E++R+ +  R  +K    S +E+
Sbjct: 498 IMAASERWEQAEQMRRKMARRGVEKTPGCSSLEL 531



 Score = 73.2 bits (178), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 58/204 (28%), Positives = 96/204 (47%), Gaps = 11/204 (5%)

Query: 10  INRKNLPN-NCLIQSFLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSL 68
           I  +NL N N LI  +  +   G   +A+ +  L+ Q  ++    T+A +L  CA+  SL
Sbjct: 243 IPTRNLVNWNALIAGYAQI---GCSEQALEAFHLMLQERVKPDEFTMASLLSACAQLGSL 299

Query: 69  KLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSG 128
           + GK+VH  +   +      F+ N LI MY KCG    AR +FD +  KN   +N M+S 
Sbjct: 300 EQGKKVHDFIN-QEHIRKNHFVMNGLIDMYAKCGDLAHARYIFDSMRWKNNECWNTMISA 358

Query: 129 YANLGMMKHARNLFDNMAERDVVSWNTMII-----GYAKSGAVEEGLKFYKVLRRFSISC 183
            A+ G    A +LF  M ER     NT+ +          G V+EGL+ +  L  + +  
Sbjct: 359 LASHGQSDEALHLFFQM-ERSGRKPNTITVLAVLGACTHGGFVDEGLQIFNKLDAYGVGA 417

Query: 184 NEFSFAGILTICVKLEELKLTRQV 207
               +  ++ +  +  +LK   ++
Sbjct: 418 GVEHYGCLVDLLGRAGKLKEAYEI 441


>gi|296090147|emb|CBI39966.3| unnamed protein product [Vitis vinifera]
          Length = 726

 Score =  312 bits (799), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 180/581 (30%), Positives = 304/581 (52%), Gaps = 43/581 (7%)

Query: 26  SLISKGQLSEAISSLDLLAQRGIRLPAETLAF--ILQQCAESKSLKLGKRVHLHLKLTQR 83
           +L   G  SEA+S L    QR IRL  +T  F  ++  CA     ++ K +H        
Sbjct: 89  ALTHNGLFSEALS-LYSETQR-IRLQPDTYTFPSVINACAGLLDFEMAKSIH-------- 138

Query: 84  KTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFD 143
                   + ++ M F  GSD              L+  N ++  Y     +  AR +F+
Sbjct: 139 --------DRVLDMGF--GSD--------------LYIGNALIDMYCRFNDLDKARKVFE 174

Query: 144 NMAERDVVSWNTMIIGYAKSGAVEEGLK-FYKVLRRFSISCNEF-----SFAGILTICVK 197
            M  RDVVSWN++I GY  +G   E L+ +Y+ ++ F    N+F     +   IL  C  
Sbjct: 175 EMPLRDVVSWNSLISGYNANGYWNEALEIYYQSIKLFMEMVNQFKPDLLTITSILQACGH 234

Query: 198 LEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTM 257
           L +L+  + VH  ++ +G+  +   S+ +++ YAKCG L  ++ +F     +D ++W +M
Sbjct: 235 LGDLEFGKYVHDYMITSGYECDTTASNILINMYAKCGNLLASQEVFSGMKCKDSVSWNSM 294

Query: 258 VSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQ 317
           ++ Y + G M  + K+F  M  ++ ++W T+IA    +      L + +RM    + P+ 
Sbjct: 295 INVYIQNGKMGDSLKVFENMKARDIITWNTIIASCVHSEDCNLGLRMISRMRTEGVTPDM 354

Query: 318 HTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDL 377
            T  S L  C+ + + + GK++HG + +    S+  V + LI+MYSKCG L +  QVF L
Sbjct: 355 ATMLSILPVCSLLAAKRQGKEIHGCIFKLGLESDVPVGNVLIEMYSKCGSLRNSFQVFKL 414

Query: 378 TDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQE 437
              K+  + W  +ISA   +G  ++A+R F +M  + + PD +    I+ AC+HSGLV+E
Sbjct: 415 MKTKD-VVTWTALISACGMYGEGKKAVRAFGEMEAAGIVPDHVAFVAIIFACSHSGLVEE 473

Query: 438 GLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVC 497
           GL YF  M  D  I P  EH+AC+++LL+++   D+  + +  MP + DS +W AL   C
Sbjct: 474 GLNYFHRMKKDYKIEPRIEHYACVVDLLSRSALLDKAEDFILSMPLKPDSSIWGALLSAC 533

Query: 498 RIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQA 557
           R+ G+ ++  +V +++I+ NP  +  + L+S+IY+ALGK   V  +R+ I  R  KK+  
Sbjct: 534 RMSGDTEIAERVSERIIELNPDDTGYYVLVSNIYAALGKWDQVRSIRKSIKARGLKKDPG 593

Query: 558 ISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQMGEDA 598
            SW+EI+NKV+ F          + +  +L  LAG M ++ 
Sbjct: 594 CSWMEIQNKVYVFGTGTKFFEQFEEVNKLLGMLAGLMAKEG 634



 Score =  145 bits (366), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 108/398 (27%), Positives = 189/398 (47%), Gaps = 72/398 (18%)

Query: 149 DVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVH 208
           +V  WN++I     +G   E L  Y   +R  +  + ++F  ++  C  L + ++ + +H
Sbjct: 79  NVYLWNSIIRALTHNGLFSEALSLYSETQRIRLQPDTYTFPSVINACAGLLDFEMAKSIH 138

Query: 209 GQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDME 268
            +VL  GF S++ I ++++D Y +  +L  AR++F+E   RDV++W +++SGY       
Sbjct: 139 DRVLDMGFGSDLYIGNALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLISGY------- 191

Query: 269 SASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACA 328
           +A+  +NE  E                 +  ++++LF   M+ + +P+  T +S L AC 
Sbjct: 192 NANGYWNEALE-----------------IYYQSIKLFME-MVNQFKPDLLTITSILQACG 233

Query: 329 SIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWN 388
            +  L+ GK VH ++I + +  +T   + LI+MY+KCG L   ++VF     K+ S+ WN
Sbjct: 234 HLGDLEFGKYVHDYMITSGYECDTTASNILINMYAKCGNLLASQEVFSGMKCKD-SVSWN 292

Query: 389 TMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYF-----E 443
           +MI+   Q+G    ++++F +M       D IT   I+ +C HS     GL        E
Sbjct: 293 SMINVYIQNGKMGDSLKVFENMKAR----DIITWNTIIASCVHSEDCNLGLRMISRMRTE 348

Query: 444 SMTHD----LGIIP----------NQEHHAC---------------LIELLAQAGCSDQL 474
            +T D    L I+P           +E H C               LIE+ ++ G    L
Sbjct: 349 GVTPDMATMLSILPVCSLLAAKRQGKEIHGCIFKLGLESDVPVGNVLIEMYSKCG---SL 405

Query: 475 MN--QLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVV 510
            N  Q+ K+    D   W AL   C ++G    G+K V
Sbjct: 406 RNSFQVFKLMKTKDVVTWTALISACGMYGE---GKKAV 440



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 78/269 (28%), Positives = 132/269 (49%), Gaps = 20/269 (7%)

Query: 257 MVSGYAKLGDMESASKLFN-EMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRP 315
           +++ YA   D  S+  +F    P  N   W ++I   T NGL  +AL L++    +R++P
Sbjct: 54  LIAKYAHFRDPTSSFSVFRLASPSNNVYLWNSIIRALTHNGLFSEALSLYSETQRIRLQP 113

Query: 316 NQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVF 375
           + +TF S + ACA ++  +  K +H  ++   F S+  + ++LIDMY +   L+  R+VF
Sbjct: 114 DTYTFPSVINACAGLLDFEMAKSIHDRVLDMGFGSDLYIGNALIDMYCRFNDLDKARKVF 173

Query: 376 DLTDNKENSMLWNTMISALTQHGYDE-------QAIRLFHDMVRSSVKPDKITLAVILNA 428
           +    ++  + WN++IS    +GY         Q+I+LF +MV +  KPD +T+  IL A
Sbjct: 174 EEMPLRD-VVSWNSLISGYNANGYWNEALEIYYQSIKLFMEMV-NQFKPDLLTITSILQA 231

Query: 429 CTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQ--AGCSDQLMNQ--LEKMPYE 484
           C H G ++     F    HD  I    E       +L    A C + L +Q     M  +
Sbjct: 232 CGHLGDLE-----FGKYVHDYMITSGYECDTTASNILINMYAKCGNLLASQEVFSGMKCK 286

Query: 485 HDSYLWNALHGVCRIHGNIDMGRKVVDQL 513
            DS  WN++  V   +G +    KV + +
Sbjct: 287 -DSVSWNSMINVYIQNGKMGDSLKVFENM 314



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 49/178 (27%), Positives = 77/178 (43%), Gaps = 4/178 (2%)

Query: 317 QHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFD 376
           Q  FSS   A AS  +     ++H  +I      + I  + LI  Y+          VF 
Sbjct: 13  QTLFSSISRALASAATTTQLHKLHSLIITLGLHHSVIFSAKLIAKYAHFRDPTSSFSVFR 72

Query: 377 LTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQ 436
           L     N  LWN++I ALT +G   +A+ L+ +  R  ++PD  T   ++NAC  +GL+ 
Sbjct: 73  LASPSNNVYLWNSIIRALTHNGLFSEALSLYSETQRIRLQPDTYTFPSVINAC--AGLLD 130

Query: 437 -EGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNAL 493
            E          D+G   +      LI++  +    D+     E+MP   D   WN+L
Sbjct: 131 FEMAKSIHDRVLDMGFGSDLYIGNALIDMYCRFNDLDKARKVFEEMPLR-DVVSWNSL 187


>gi|115476932|ref|NP_001062062.1| Os08g0481000 [Oryza sativa Japonica Group]
 gi|42409025|dbj|BAD10278.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113624031|dbj|BAF23976.1| Os08g0481000 [Oryza sativa Japonica Group]
 gi|215715342|dbj|BAG95093.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|222640747|gb|EEE68879.1| hypothetical protein OsJ_27695 [Oryza sativa Japonica Group]
          Length = 563

 Score =  312 bits (799), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 173/535 (32%), Positives = 289/535 (54%), Gaps = 41/535 (7%)

Query: 92  NHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGM-MKHARNLFDNMAERDV 150
           N  I+   + G    AR+VFD +P ++  S+N +L+     G  +  AR+LFD+M  R+V
Sbjct: 20  NQRITALARAGDVAAARRVFDAMPRRDAVSWNALLTALWRAGRDLPAARSLFDDMPSRNV 79

Query: 151 VSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQ 210
           +SWN++I G    G +     ++    R +++      AG+    V+L  ++  R +  Q
Sbjct: 80  ISWNSIIAGCLAHGDLAAASAYFARAPRRNVASWNAMLAGL----VRLGSMEDARSLFDQ 135

Query: 211 VLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESA 270
           +       NVV  +++VD  A+CGE++ AR LFD    R++++W  M+SGY     +E A
Sbjct: 136 MPE----RNVVSYTTMVDGLARCGEVASARELFDAMPTRNLVSWAAMISGYVDNNMLEEA 191

Query: 271 SKLFNEMPEKNPV-------------------------------SWTTLIAGYTRNGLGQ 299
            KLF  MPEKN V                               SW  +I+GY  NGLG+
Sbjct: 192 RKLFEAMPEKNVVACTAMITGYCKEGDLQNARRLFDGIRAKDVISWNAIISGYVHNGLGE 251

Query: 300 KALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLI 359
           +A +L+  M+   I+P+Q T  + L AC+S+  L+ G+  H  +I+    S+  + ++L+
Sbjct: 252 EATKLYIIMLREGIKPDQATLIALLTACSSLALLRQGRSTHAVVIKAMLESSISICNALM 311

Query: 360 DMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDK 419
            MYSKCG +++   VF ++   ++ + WNT+I+A  QHG  ++ I LFH+M    + P+ 
Sbjct: 312 TMYSKCGNVDESELVF-MSLKSQDIVSWNTIIAAYAQHGRYQKVIALFHEMELCGLIPND 370

Query: 420 ITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLE 479
           IT   +L+AC H+G V E L  F+ M     I P  EH+AC++++L++AG  ++  + ++
Sbjct: 371 ITFLSMLSACGHAGRVDESLKLFDLMFSKYAISPRAEHYACIVDILSRAGQLEKACSYIK 430

Query: 480 KMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRL 539
           +MP E +  +W  L    + HGN+ +G      L+  + +SS  + +LS+IY+A G    
Sbjct: 431 EMPSEAEKNVWGTLLCASQTHGNVQLGELAAKMLVLSDFESSGAYVMLSNIYAAAGMWGE 490

Query: 540 VEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQM 594
           V +VR  + E+  KK+   SW EI +KVH F   D+ HP  D++ S L +++  M
Sbjct: 491 VNRVRSQMKEKGVKKQPGHSWTEIADKVHMFVGGDASHPEMDMILSELRKISFHM 545



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 46/200 (23%), Positives = 98/200 (49%), Gaps = 10/200 (5%)

Query: 9   GINRKNLPN-NCLIQSFLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKS 67
           GI  K++ + N +I  +   +  G   EA     ++ + GI+    TL  +L  C+    
Sbjct: 228 GIRAKDVISWNAIISGY---VHNGLGEEATKLYIIMLREGIKPDQATLIALLTACSSLAL 284

Query: 68  LKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLS 127
           L+ G+  H  +     ++  + + N L++MY KCG+  ++  VF  +  +++ S+N +++
Sbjct: 285 LRQGRSTHAVVIKAMLESSIS-ICNALMTMYSKCGNVDESELVFMSLKSQDIVSWNTIIA 343

Query: 128 GYANLGMMKHARNLFDNMAERDV----VSWNTMIIGYAKSGAVEEGLKFYKVL-RRFSIS 182
            YA  G  +    LF  M    +    +++ +M+     +G V+E LK + ++  +++IS
Sbjct: 344 AYAQHGRYQKVIALFHEMELCGLIPNDITFLSMLSACGHAGRVDESLKLFDLMFSKYAIS 403

Query: 183 CNEFSFAGILTICVKLEELK 202
                +A I+ I  +  +L+
Sbjct: 404 PRAEHYACIVDILSRAGQLE 423


>gi|225466196|ref|XP_002265420.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 537

 Score =  312 bits (799), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 163/472 (34%), Positives = 262/472 (55%), Gaps = 5/472 (1%)

Query: 110 VFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEG 169
           +FD      + S+       +  G + HA  LF ++  R    WNTM+  +         
Sbjct: 42  LFDPFAAGRIISF----CAVSAQGDISHAYLLFLSLPRRTSFIWNTMLRAFTDKKEPATV 97

Query: 170 LKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDA 229
           L  YK +       N ++F+ +L  C +L +L     +H Q +  G+ +   + + ++  
Sbjct: 98  LSLYKYMLSTGFLPNNYTFSFLLQACAQLSDLSFGILLHAQAVRLGWEAYDFVQNGLLHL 157

Query: 230 YAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLI 289
           YA C  +  ARRLFD +  RDV+TWT +++GYAK G +  A +LF+EMPEKN VSW+ +I
Sbjct: 158 YASCNCMDSARRLFDGSVNRDVVTWTAVINGYAKSGQVVVARQLFDEMPEKNAVSWSAMI 217

Query: 290 AGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFR 349
            GY + GL ++ALELF  M I   RPN       L ACA + +L  G+ +H ++ R    
Sbjct: 218 TGYAQIGLFREALELFNDMQIAGFRPNHGAIVGALTACAFLGALDQGRWIHAYVDRNRMV 277

Query: 350 SNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHD 409
            + I+ ++LIDMY+KCGC+    +VFD   +++    + ++IS L  HG+   AI +F  
Sbjct: 278 LDRILGTALIDMYAKCGCVETACRVFDEMLDRD-VFAFTSLISGLANHGHSATAIEMFTR 336

Query: 410 MVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAG 469
           M    V P+++T   +L+AC+  GLV+EGL  F+SMT+  GI P  +H+ CL++LL +AG
Sbjct: 337 MQNEGVCPNEVTFICLLSACSRVGLVEEGLRIFKSMTNIYGIEPVVQHYGCLVDLLGRAG 396

Query: 470 CSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSS 529
             +     + +MP E DSY+  AL   CR+HG++++G++ V+ L +++      H LLS+
Sbjct: 397 MLEDAKRVVREMPLEPDSYVLGALLNACRVHGDVELGKETVECLAERSLDHGGVHVLLSN 456

Query: 530 IYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRD 581
           +Y++  +   V KVR+ + E++ KK    S IE++  V  F   D  H   D
Sbjct: 457 MYASANQWEDVAKVRKGMEEKKVKKVPGCSLIEVDGAVFEFVAGDMSHVFMD 508



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 92/314 (29%), Positives = 156/314 (49%), Gaps = 12/314 (3%)

Query: 7   PRGINRKNLPNNCLIQSFLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESK 66
           PR   R +   N ++++F     K + +  +S    +   G      T +F+LQ CA+  
Sbjct: 74  PR---RTSFIWNTMLRAF---TDKKEPATVLSLYKYMLSTGFLPNNYTFSFLLQACAQLS 127

Query: 67  SLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNML 126
            L  G  +H    +        F+ N L+ +Y  C     AR++FD    +++ ++  ++
Sbjct: 128 DLSFGILLHAQ-AVRLGWEAYDFVQNGLLHLYASCNCMDSARRLFDGSVNRDVVTWTAVI 186

Query: 127 SGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEF 186
           +GYA  G +  AR LFD M E++ VSW+ MI GYA+ G   E L+ +  ++      N  
Sbjct: 187 NGYAKSGQVVVARQLFDEMPEKNAVSWSAMITGYAQIGLFREALELFNDMQIAGFRPNHG 246

Query: 187 SFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDET 246
           +  G LT C  L  L   R +H  V     + + ++ ++++D YAKCG +  A R+FDE 
Sbjct: 247 AIVGALTACAFLGALDQGRWIHAYVDRNRMVLDRILGTALIDMYAKCGCVETACRVFDEM 306

Query: 247 DARDVLTWTTMVSGYAKLGDMESASKLFNEMPEK----NPVSWTTLIAGYTRNGLGQKAL 302
             RDV  +T+++SG A  G   +A ++F  M  +    N V++  L++  +R GL ++ L
Sbjct: 307 LDRDVFAFTSLISGLANHGHSATAIEMFTRMQNEGVCPNEVTFICLLSACSRVGLVEEGL 366

Query: 303 ELFTRMM-ILRIRP 315
            +F  M  I  I P
Sbjct: 367 RIFKSMTNIYGIEP 380


>gi|115456187|ref|NP_001051694.1| Os03g0816600 [Oryza sativa Japonica Group]
 gi|113550165|dbj|BAF13608.1| Os03g0816600, partial [Oryza sativa Japonica Group]
          Length = 708

 Score =  312 bits (799), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 172/581 (29%), Positives = 293/581 (50%), Gaps = 42/581 (7%)

Query: 24  FLSLISKGQLSEAISSLDLLAQRGIRL--PAETLAFILQQCAESKSLKLGKRVHLHLKLT 81
           F+ L + G+L +A+        RG+     A   + + + C   ++L+  +++H     T
Sbjct: 80  FVRLCATGRLRDALRR----PFRGVLWSDAARLFSHLFRAC---RALRPLRQLHA-FAAT 131

Query: 82  QRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNL 141
                  F +NHL+  Y   G    AR++F++IP +N+ S+N +  GY   G +  AR L
Sbjct: 132 SGAATDRFTANHLMLAYADLGDLTAARELFERIPRRNVMSWNILFGGYIKNGDLGGARKL 191

Query: 142 FDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEEL 201
           FD M ER+V +WN M+ G    G  EE L F+  +RR  +  +EF    +   C  L ++
Sbjct: 192 FDEMPERNVATWNAMVAGLTNLGFDEESLGFFLDMRREGMHPDEFGLGSVFRCCAGLRDV 251

Query: 202 KLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGY 261
              RQVH  V+ +G   ++ + SS+   Y +CG L                         
Sbjct: 252 VTGRQVHAYVVRSGLDRDMCVGSSLAHMYMRCGCL------------------------- 286

Query: 262 AKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFS 321
                 +    +   +P  + VS  T+IAG T+NG  + ALE F  M  + +  +  TF 
Sbjct: 287 ------QEGEAVLRMLPSLSIVSCNTIIAGRTQNGDSEGALEYFCMMRSVGVAADVVTFV 340

Query: 322 SCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNK 381
           S + +C+ + +L  G+Q+HG +++        VM+ L+ MYS+CGCL D  +VF      
Sbjct: 341 SAISSCSDLAALAQGQQIHGQVMKAGVDKVVPVMTCLVHMYSRCGCLGDSERVF-FGYCG 399

Query: 382 ENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTY 441
            ++ L + MISA   HG+ ++AI LF  M+    +P  +T   +L AC+HSGL +EG+  
Sbjct: 400 SDTFLLSAMISAYGFHGHGQKAIELFKQMMNGGAEPSDVTFLALLYACSHSGLKEEGMDC 459

Query: 442 FESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHG 501
           FE MT   G+ P+ +H+ C+++LL ++GC D+    +  MP   D  +W  L   C+   
Sbjct: 460 FELMTKTYGMQPSVKHYTCVVDLLGRSGCLDEAEALILSMPLTPDGVIWKTLLSACKTQK 519

Query: 502 NIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWI 561
           N DM  ++  ++I+ +P  SA++ LLS+I +   +   V +VR+ + +   +KE  +SW+
Sbjct: 520 NFDMAERIAKRVIELDPHDSASYVLLSNIRATSRRWGDVSEVRKAMRDNNVRKEPGVSWV 579

Query: 562 EIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQMGEDAPSLD 602
           E++  +H F   D  HP +  +   LE++  ++ +   S D
Sbjct: 580 ELKGHIHQFCTGDESHPRQKEIDECLEEMMAKIRQCGYSPD 620



 Score = 44.7 bits (104), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 36/173 (20%), Positives = 80/173 (46%), Gaps = 8/173 (4%)

Query: 13  KNLPNNCLIQSFLSLISKGQLSEAISSLDLLAQ-RGIRLPAETLAFI--LQQCAESKSLK 69
           + LP+  ++     +  + Q  ++  +L+     R + + A+ + F+  +  C++  +L 
Sbjct: 294 RMLPSLSIVSCNTIIAGRTQNGDSEGALEYFCMMRSVGVAADVVTFVSAISSCSDLAALA 353

Query: 70  LGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGY 129
            G+++H  +           ++  L+ MY +CG   D+ +VF      + F  + M+S Y
Sbjct: 354 QGQQIHGQVMKAGVDKVVPVMTC-LVHMYSRCGCLGDSERVFFGYCGSDTFLLSAMISAY 412

Query: 130 ANLGMMKHARNLFDNM----AERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRR 178
              G  + A  LF  M    AE   V++  ++   + SG  EEG+  ++++ +
Sbjct: 413 GFHGHGQKAIELFKQMMNGGAEPSDVTFLALLYACSHSGLKEEGMDCFELMTK 465


>gi|356528966|ref|XP_003533068.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15930-like [Glycine max]
          Length = 712

 Score =  311 bits (798), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 151/473 (31%), Positives = 278/473 (58%), Gaps = 1/473 (0%)

Query: 118 NLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLR 177
           NLF     +  ++   ++  AR +FD     +VV+WN M+ GY +    ++    +  + 
Sbjct: 141 NLFVQKAFIHMFSLCRLVDLARKVFDMGDAWEVVTWNIMLSGYNRVKQFKKSKMLFIEME 200

Query: 178 RFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELS 237
           +  +S N  +   +L+ C KL++L+  + ++  +       N+++ + ++D +A CGE+ 
Sbjct: 201 KRGVSPNSVTLVLMLSACSKLKDLEGGKHIYKYINGGIVERNLILENVLIDMFAACGEMD 260

Query: 238 DARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGL 297
           +A+ +FD    RDV++WT++V+G+A +G ++ A K F+++PE++ VSWT +I GY R   
Sbjct: 261 EAQSVFDNMKNRDVISWTSIVTGFANIGQIDLARKYFDQIPERDYVSWTAMIDGYLRMNR 320

Query: 298 GQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSS 357
             +AL LF  M +  ++P++ T  S L ACA + +L+ G+ V  ++ + + +++T V ++
Sbjct: 321 FIEALALFREMQMSNVKPDEFTMVSILTACAHLGALELGEWVKTYIDKNSIKNDTFVGNA 380

Query: 358 LIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKP 417
           LIDMY KCG +   ++VF    +K+    W  MI  L  +G+ E+A+ +F +M+ +S+ P
Sbjct: 381 LIDMYFKCGNVGKAKKVFKEMHHKD-KFTWTAMIVGLAINGHGEEALAMFSNMIEASITP 439

Query: 418 DKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQ 477
           D+IT   +L ACTH+G+V++G ++F SMT   GI PN  H+ C+++LL +AG  ++    
Sbjct: 440 DEITYIGVLCACTHAGMVEKGQSFFISMTMQHGIKPNVTHYGCMVDLLGRAGRLEEAHEV 499

Query: 478 LEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKG 537
           +  MP + +S +W +L G CR+H N+ +      Q+++  P++ A + LL +IY+A  + 
Sbjct: 500 IVNMPVKPNSIVWGSLLGACRVHKNVQLAEMAAKQILELEPENGAVYVLLCNIYAACKRW 559

Query: 538 RLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQL 590
             + +VR+L+ ER  KK    S +E+   V+ F   D  HP    +Y+ LE +
Sbjct: 560 ENLRQVRKLMMERGIKKTPGCSLMELNGNVYEFVAGDQSHPQSKEIYAKLENM 612



 Score =  163 bits (412), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 94/358 (26%), Positives = 173/358 (48%), Gaps = 37/358 (10%)

Query: 43  LAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLK--LTQRKTPTTFLSNHLISMYFK 100
           + +RG+   + TL  +L  C++ K L+ GK ++ ++   + +R      L N LI M+  
Sbjct: 199 MEKRGVSPNSVTLVLMLSACSKLKDLEGGKHIYKYINGGIVER---NLILENVLIDMFAA 255

Query: 101 CGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGY 160
           CG   +A+ VFD +  +++ S+ ++++G+AN+G +  AR  FD + ERD VSW  MI GY
Sbjct: 256 CGEMDEAQSVFDNMKNRDVISWTSIVTGFANIGQIDLARKYFDQIPERDYVSWTAMIDGY 315

Query: 161 AKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNV 220
            +     E L  ++ ++  ++  +EF+   ILT C  L  L+L   V   +      ++ 
Sbjct: 316 LRMNRFIEALALFREMQMSNVKPDEFTMVSILTACAHLGALELGEWVKTYIDKNSIKNDT 375

Query: 221 VISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEK 280
            + ++++D Y KCG +  A+++F E   +D  TWT M+ G A                  
Sbjct: 376 FVGNALIDMYFKCGNVGKAKKVFKEMHHKDKFTWTAMIVGLAI----------------- 418

Query: 281 NPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVH 340
                         NG G++AL +F+ M+   I P++ T+   LCAC     ++ G+   
Sbjct: 419 --------------NGHGEEALAMFSNMIEASITPDEITYIGVLCACTHAGMVEKGQSFF 464

Query: 341 -GFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQH 397
               ++   + N      ++D+  + G L +  +V      K NS++W +++ A   H
Sbjct: 465 ISMTMQHGIKPNVTHYGCMVDLLGRAGRLEEAHEVIVNMPVKPNSIVWGSLLGACRVH 522



 Score =  129 bits (324), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 87/336 (25%), Positives = 151/336 (44%), Gaps = 61/336 (18%)

Query: 133 GMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGIL 192
           G M +AR +FD + +  +  WNTMI GY++    + G+  Y ++   +I  + F+F  +L
Sbjct: 55  GKMIYARQVFDAIPQPTLFIWNTMIKGYSRINHPQNGVSMYLLMLASNIKPDRFTFPFLL 114

Query: 193 TICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVL 252
               +   L+  + +    +  GF SN+ +  + +  ++ C  +  AR++FD  DA +V+
Sbjct: 115 KGFTRNMALQYGKVLLNHAVKHGFDSNLFVQKAFIHMFSLCRLVDLARKVFDMGDAWEVV 174

Query: 253 TWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILR 312
           TW  M+SGY ++   + +  LF EM EK  VS                            
Sbjct: 175 TWNIMLSGYNRVKQFKKSKMLFIEM-EKRGVS---------------------------- 205

Query: 313 IRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGR 372
             PN  T    L AC+ +  L+ GK ++ ++       N I+ + LIDM++ CG +++ +
Sbjct: 206 --PNSVTLVLMLSACSKLKDLEGGKHIYKYINGGIVERNLILENVLIDMFAACGEMDEAQ 263

Query: 373 QVFDLTDNKE------------------------------NSMLWNTMISALTQHGYDEQ 402
            VFD   N++                              + + W  MI    +     +
Sbjct: 264 SVFDNMKNRDVISWTSIVTGFANIGQIDLARKYFDQIPERDYVSWTAMIDGYLRMNRFIE 323

Query: 403 AIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEG 438
           A+ LF +M  S+VKPD+ T+  IL AC H G ++ G
Sbjct: 324 ALALFREMQMSNVKPDEFTMVSILTACAHLGALELG 359



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 70/255 (27%), Positives = 130/255 (50%), Gaps = 7/255 (2%)

Query: 265 GDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCL 324
           G M  A ++F+ +P+     W T+I GY+R    Q  + ++  M+   I+P++ TF   L
Sbjct: 55  GKMIYARQVFDAIPQPTLFIWNTMIKGYSRINHPQNGVSMYLLMLASNIKPDRFTFPFLL 114

Query: 325 CACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENS 384
                 ++L++GK +    ++  F SN  V  + I M+S C  ++  R+VFD+ D  E  
Sbjct: 115 KGFTRNMALQYGKVLLNHAVKHGFDSNLFVQKAFIHMFSLCRLVDLARKVFDMGDAWE-V 173

Query: 385 MLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFES 444
           + WN M+S   +    +++  LF +M +  V P+ +TL ++L+AC+    ++ G   ++ 
Sbjct: 174 VTWNIMLSGYNRVKQFKKSKMLFIEMEKRGVSPNSVTLVLMLSACSKLKDLEGGKHIYKY 233

Query: 445 MTHDLGIIP-NQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNAL-HGVCRIHGN 502
           +  + GI+  N      LI++ A  G  D+  +  + M    D   W ++  G   I G 
Sbjct: 234 I--NGGIVERNLILENVLIDMFAACGEMDEAQSVFDNMK-NRDVISWTSIVTGFANI-GQ 289

Query: 503 IDMGRKVVDQLIDQN 517
           ID+ RK  DQ+ +++
Sbjct: 290 IDLARKYFDQIPERD 304



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 44/143 (30%), Positives = 74/143 (51%), Gaps = 5/143 (3%)

Query: 35  EAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHL 94
           EA++    +    ++    T+  IL  CA   +L+LG+ V  ++     K   TF+ N L
Sbjct: 323 EALALFREMQMSNVKPDEFTMVSILTACAHLGALELGEWVKTYIDKNSIKN-DTFVGNAL 381

Query: 95  ISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAER----DV 150
           I MYFKCG+   A+KVF ++  K+ F++  M+ G A  G  + A  +F NM E     D 
Sbjct: 382 IDMYFKCGNVGKAKKVFKEMHHKDKFTWTAMIVGLAINGHGEEALAMFSNMIEASITPDE 441

Query: 151 VSWNTMIIGYAKSGAVEEGLKFY 173
           +++  ++     +G VE+G  F+
Sbjct: 442 ITYIGVLCACTHAGMVEKGQSFF 464


>gi|168056582|ref|XP_001780298.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162668246|gb|EDQ54857.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 986

 Score =  311 bits (798), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 174/564 (30%), Positives = 293/564 (51%), Gaps = 65/564 (11%)

Query: 31  GQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFL 90
           G++ EA    + + + GI     T   IL  C+   +LK G+++                
Sbjct: 392 GRIDEAFLFFNKMIESGIEPNRVTFMSILGACSSPSALKRGQQIQ--------------- 436

Query: 91  SNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDV 150
            +H+I   +  GSD   R                +LS YA  G +K A  +F+ +++++V
Sbjct: 437 -DHIIEAGY--GSDDRVRTA--------------LLSMYAKCGSLKDAHRVFEKISKQNV 479

Query: 151 VSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQ 210
           V+WN MI  Y +    +  L  ++ L +  I  N  +F  IL +C   + L+L + VH  
Sbjct: 480 VAWNAMITAYVQHEQYDNALATFQALLKEGIKPNSSTFTSILNVCKSSDSLELGKWVHFL 539

Query: 211 VLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESA 270
           ++  G  S++ +S+++V  +  CG                               D+ SA
Sbjct: 540 IMKAGLESDLHVSNALVSMFVNCG-------------------------------DLMSA 568

Query: 271 SKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASI 330
             LFN+MP+++ VSW T+IAG+ ++G  Q A + F  M    I+P++ TF+  L ACAS 
Sbjct: 569 KNLFNDMPKRDLVSWNTIIAGFVQHGKNQVAFDYFKMMQESGIKPDKITFTGLLNACASP 628

Query: 331 VSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTM 390
            +L  G+++H  +    F  + +V + LI MY+KCG + D  QVF     K+N   W +M
Sbjct: 629 EALTEGRRLHALITEAAFDCDVLVGTGLISMYTKCGSIEDAHQVFHKLP-KKNVYSWTSM 687

Query: 391 ISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLG 450
           I+   QHG  ++A+ LF+ M +  VKPD IT    L+AC H+GL++EGL +F+SM  +  
Sbjct: 688 ITGYAQHGRGKEALELFYQMQQEGVKPDWITFVGALSACAHAGLIEEGLHHFQSMK-EFN 746

Query: 451 IIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVV 510
           I P  EH+ C+++L  +AG  ++ +  + KM  E DS +W AL G C++H N+++  K  
Sbjct: 747 IEPRMEHYGCMVDLFGRAGLLNEAVEFIIKMQVEPDSRVWGALLGACQVHLNVELAEKAA 806

Query: 511 DQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAF 570
            + ++ +P  +    +LS+IY+A G  + V K+R+++ +R   K+   SWIE++ KVH F
Sbjct: 807 QKKLELDPNDNGVFVILSNIYAAAGMWKEVAKMRKVMLDRGVVKKPGQSWIEVDGKVHTF 866

Query: 571 SVSDSLHPMRDVLYSVLEQLAGQM 594
              D  HP  + +++ LE+L  +M
Sbjct: 867 YSDDKTHPQTEEIHAELERLHMEM 890



 Score =  187 bits (475), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 150/605 (24%), Positives = 262/605 (43%), Gaps = 113/605 (18%)

Query: 23  SFLSLISK-GQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLT 81
           + L+ +SK GQ +EA+  L+ +    I++  +T + +LQ C + K+L  G+R++ H+K  
Sbjct: 80  AVLNRLSKAGQFNEAMQVLERVDSSHIQIYRQTYSALLQLCIKFKNLGDGERIYNHIK-- 137

Query: 82  QRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNL 141
                             K G   D            +F +N +++ YA  G    A+ +
Sbjct: 138 ------------------KSGVQPD------------IFMWNTLINMYAKCGNTISAKQI 167

Query: 142 FDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEEL 201
           FD+M E+DV SWN ++ GY + G  EE  K ++ + + S+  ++ +F  +L  C     +
Sbjct: 168 FDDMREKDVYSWNLLLGGYVQHGLYEEAFKLHEQMVQDSVKPDKRTFVSMLNACADARNV 227

Query: 202 KLTRQVHGQVLVTGFLSNVVIS-------------------------------SSIVDAY 230
              R+++  +L  G+ +++ +                                +S++   
Sbjct: 228 DKGRELYNLILKAGWDTDLFVGTALINMHIKCGDIGDATKVFDNLPTRDLVTWTSMITGL 287

Query: 231 AKCGELSDARRLFDETDARDV--------------------------------LTW---- 254
           A+ G    A  LF   +   V                                + W    
Sbjct: 288 ARHGRFKQACNLFQRMEEEGVQPDKVAFVSLLRACNHPEALEQGKKVHARMKEVGWDTEI 347

Query: 255 ---TTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMIL 311
              T ++S Y K G ME A ++F+ +  +N VSWT +IAG+ ++G   +A   F +M+  
Sbjct: 348 YVGTAILSMYTKCGSMEDALEVFDLVKGRNVVSWTAMIAGFAQHGRIDEAFLFFNKMIES 407

Query: 312 RIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDG 371
            I PN+ TF S L AC+S  +LK G+Q+   +I   + S+  V ++L+ MY+KCG L D 
Sbjct: 408 GIEPNRVTFMSILGACSSPSALKRGQQIQDHIIEAGYGSDDRVRTALLSMYAKCGSLKDA 467

Query: 372 RQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTH 431
            +VF+   +K+N + WN MI+A  QH   + A+  F  +++  +KP+  T   ILN C  
Sbjct: 468 HRVFEKI-SKQNVVAWNAMITAYVQHEQYDNALATFQALLKEGIKPNSSTFTSILNVCKS 526

Query: 432 SGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWN 491
           S  ++ G  +   +    G+  +      L+ +    G      N    MP + D   WN
Sbjct: 527 SDSLELG-KWVHFLIMKAGLESDLHVSNALVSMFVNCGDLMSAKNLFNDMP-KRDLVSWN 584

Query: 492 ALHGVCRIHGNIDMGRKVVDQLIDQN--PQSSATHGLLSSIYS--ALGKGRLVEKVRQLI 547
            +      HG   +       + +    P      GLL++  S  AL +GR   ++  LI
Sbjct: 585 TIIAGFVQHGKNQVAFDYFKMMQESGIKPDKITFTGLLNACASPEALTEGR---RLHALI 641

Query: 548 NERQF 552
            E  F
Sbjct: 642 TEAAF 646



 Score =  149 bits (375), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 93/380 (24%), Positives = 168/380 (44%), Gaps = 66/380 (17%)

Query: 18  NCLIQSFLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLH 77
           N +I ++   +   Q   A+++   L + GI+  + T   IL  C  S SL+LGK VH  
Sbjct: 483 NAMITAY---VQHEQYDNALATFQALLKEGIKPNSSTFTSILNVCKSSDSLELGKWVHF- 538

Query: 78  LKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKH 137
           L +         +SN L+SM+  CG                                +  
Sbjct: 539 LIMKAGLESDLHVSNALVSMFVNCGD-------------------------------LMS 567

Query: 138 ARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVK 197
           A+NLF++M +RD+VSWNT+I G+ + G  +    ++K+++   I  ++ +F G+L  C  
Sbjct: 568 AKNLFNDMPKRDLVSWNTIIAGFVQHGKNQVAFDYFKMMQESGIKPDKITFTGLLNACAS 627

Query: 198 LEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTM 257
            E L   R++H  +    F  +V++ + ++  Y KCG + DA ++F +   ++V +WT+M
Sbjct: 628 PEALTEGRRLHALITEAAFDCDVLVGTGLISMYTKCGSIEDAHQVFHKLPKKNVYSWTSM 687

Query: 258 VSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQ 317
           ++GYA+ G                                G++ALELF +M    ++P+ 
Sbjct: 688 ITGYAQHGR-------------------------------GKEALELFYQMQQEGVKPDW 716

Query: 318 HTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDL 377
            TF   L ACA    ++ G      +   N          ++D++ + G LN+  +    
Sbjct: 717 ITFVGALSACAHAGLIEEGLHHFQSMKEFNIEPRMEHYGCMVDLFGRAGLLNEAVEFIIK 776

Query: 378 TDNKENSMLWNTMISALTQH 397
              + +S +W  ++ A   H
Sbjct: 777 MQVEPDSRVWGALLGACQVH 796


>gi|296085795|emb|CBI31119.3| unnamed protein product [Vitis vinifera]
          Length = 512

 Score =  311 bits (798), Expect = 5e-82,   Method: Compositional matrix adjust.
 Identities = 163/472 (34%), Positives = 262/472 (55%), Gaps = 5/472 (1%)

Query: 110 VFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEG 169
           +FD      + S+       +  G + HA  LF ++  R    WNTM+  +         
Sbjct: 17  LFDPFAAGRIISF----CAVSAQGDISHAYLLFLSLPRRTSFIWNTMLRAFTDKKEPATV 72

Query: 170 LKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDA 229
           L  YK +       N ++F+ +L  C +L +L     +H Q +  G+ +   + + ++  
Sbjct: 73  LSLYKYMLSTGFLPNNYTFSFLLQACAQLSDLSFGILLHAQAVRLGWEAYDFVQNGLLHL 132

Query: 230 YAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLI 289
           YA C  +  ARRLFD +  RDV+TWT +++GYAK G +  A +LF+EMPEKN VSW+ +I
Sbjct: 133 YASCNCMDSARRLFDGSVNRDVVTWTAVINGYAKSGQVVVARQLFDEMPEKNAVSWSAMI 192

Query: 290 AGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFR 349
            GY + GL ++ALELF  M I   RPN       L ACA + +L  G+ +H ++ R    
Sbjct: 193 TGYAQIGLFREALELFNDMQIAGFRPNHGAIVGALTACAFLGALDQGRWIHAYVDRNRMV 252

Query: 350 SNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHD 409
            + I+ ++LIDMY+KCGC+    +VFD   +++    + ++IS L  HG+   AI +F  
Sbjct: 253 LDRILGTALIDMYAKCGCVETACRVFDEMLDRD-VFAFTSLISGLANHGHSATAIEMFTR 311

Query: 410 MVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAG 469
           M    V P+++T   +L+AC+  GLV+EGL  F+SMT+  GI P  +H+ CL++LL +AG
Sbjct: 312 MQNEGVCPNEVTFICLLSACSRVGLVEEGLRIFKSMTNIYGIEPVVQHYGCLVDLLGRAG 371

Query: 470 CSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSS 529
             +     + +MP E DSY+  AL   CR+HG++++G++ V+ L +++      H LLS+
Sbjct: 372 MLEDAKRVVREMPLEPDSYVLGALLNACRVHGDVELGKETVECLAERSLDHGGVHVLLSN 431

Query: 530 IYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRD 581
           +Y++  +   V KVR+ + E++ KK    S IE++  V  F   D  H   D
Sbjct: 432 MYASANQWEDVAKVRKGMEEKKVKKVPGCSLIEVDGAVFEFVAGDMSHVFMD 483



 Score =  144 bits (364), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 92/314 (29%), Positives = 156/314 (49%), Gaps = 12/314 (3%)

Query: 7   PRGINRKNLPNNCLIQSFLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESK 66
           PR   R +   N ++++F     K + +  +S    +   G      T +F+LQ CA+  
Sbjct: 49  PR---RTSFIWNTMLRAF---TDKKEPATVLSLYKYMLSTGFLPNNYTFSFLLQACAQLS 102

Query: 67  SLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNML 126
            L  G  +H    +        F+ N L+ +Y  C     AR++FD    +++ ++  ++
Sbjct: 103 DLSFGILLHAQ-AVRLGWEAYDFVQNGLLHLYASCNCMDSARRLFDGSVNRDVVTWTAVI 161

Query: 127 SGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEF 186
           +GYA  G +  AR LFD M E++ VSW+ MI GYA+ G   E L+ +  ++      N  
Sbjct: 162 NGYAKSGQVVVARQLFDEMPEKNAVSWSAMITGYAQIGLFREALELFNDMQIAGFRPNHG 221

Query: 187 SFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDET 246
           +  G LT C  L  L   R +H  V     + + ++ ++++D YAKCG +  A R+FDE 
Sbjct: 222 AIVGALTACAFLGALDQGRWIHAYVDRNRMVLDRILGTALIDMYAKCGCVETACRVFDEM 281

Query: 247 DARDVLTWTTMVSGYAKLGDMESASKLFNEMPEK----NPVSWTTLIAGYTRNGLGQKAL 302
             RDV  +T+++SG A  G   +A ++F  M  +    N V++  L++  +R GL ++ L
Sbjct: 282 LDRDVFAFTSLISGLANHGHSATAIEMFTRMQNEGVCPNEVTFICLLSACSRVGLVEEGL 341

Query: 303 ELFTRMM-ILRIRP 315
            +F  M  I  I P
Sbjct: 342 RIFKSMTNIYGIEP 355


>gi|356523586|ref|XP_003530418.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like [Glycine max]
          Length = 604

 Score =  311 bits (798), Expect = 5e-82,   Method: Compositional matrix adjust.
 Identities = 178/537 (33%), Positives = 262/537 (48%), Gaps = 69/537 (12%)

Query: 54  TLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDK 113
           T  F+L+ C    SL L + +H H++         F+ N LI  Y +CGS          
Sbjct: 122 TYPFLLKACTGPSSLPLVRMIHAHVEKFGFYG-DIFVPNSLIDSYSRCGS---------- 170

Query: 114 IPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFY 173
                                +  A +LF  M ERDVV+WN+MI G  + G +E   K +
Sbjct: 171 -------------------AGLDGAMSLFLAMKERDVVTWNSMIGGLVRCGELEGACKLF 211

Query: 174 KVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKC 233
             +                                          ++V  ++++D YAK 
Sbjct: 212 DEMPE---------------------------------------RDMVSWNTMLDGYAKA 232

Query: 234 GELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYT 293
           GE+  A  LF+    R++++W+TMV GY+K GDM+ A  LF+  P KN V WTT+IAGY 
Sbjct: 233 GEMDRAFELFERMPQRNIVSWSTMVCGYSKGGDMDMARVLFDRCPAKNVVLWTTIIAGYA 292

Query: 294 RNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTI 353
             G  ++A EL+ +M    +RP+     S L ACA    L  GK++H  + R  FR  T 
Sbjct: 293 EKGFVREATELYGKMEEAGLRPDDGFLISILAACAESGMLGLGKRIHASMRRWRFRCGTK 352

Query: 354 VMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRS 413
           V+++ IDMY+KCGCL+    VF     K++ + WN+MI     HG+ E+A+ LF  MV  
Sbjct: 353 VLNAFIDMYAKCGCLDAAFDVFSGMMAKKDVVSWNSMIQGFAMHGHGEKALELFSRMVPE 412

Query: 414 SVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQ 473
             +PD  T   +L ACTH+GLV EG  YF SM    GI+P  EH+ C+++LL + G   +
Sbjct: 413 GFEPDTYTFVGLLCACTHAGLVNEGRKYFYSMEKVYGIVPQVEHYGCMMDLLGRGGHLKE 472

Query: 474 LMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSA 533
               L  MP E ++ +   L   CR+H ++D  R V +QL    P     + LLS+IY+ 
Sbjct: 473 AFTLLRSMPMEPNAIILGTLLNACRMHNDVDFARAVCEQLFKVEPTDPGNYSLLSNIYAQ 532

Query: 534 LGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQL 590
            G    V  VR  +     +K    S IE+E +VH F+V D  HP  D +Y ++++L
Sbjct: 533 AGDWMNVANVRLQMMNTGGQKPSGASSIEVEEEVHEFTVFDQSHPKSDDIYKMIDRL 589



 Score = 68.6 bits (166), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 49/154 (31%), Positives = 75/154 (48%), Gaps = 6/154 (3%)

Query: 30  KGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTF 89
           KG + EA      + + G+R     L  IL  CAES  L LGKR+H  ++  + +  T  
Sbjct: 294 KGFVREATELYGKMEEAGLRPDDGFLISILAACAESGMLGLGKRIHASMRRWRFRCGTKV 353

Query: 90  LSNHLISMYFKCGSDVDARKVFDKIPV-KNLFSYNNMLSGYANLGMMKHARNLFDNMA-- 146
           L N  I MY KCG    A  VF  +   K++ S+N+M+ G+A  G  + A  LF  M   
Sbjct: 354 L-NAFIDMYAKCGCLDAAFDVFSGMMAKKDVVSWNSMIQGFAMHGHGEKALELFSRMVPE 412

Query: 147 --ERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRR 178
             E D  ++  ++     +G V EG K++  + +
Sbjct: 413 GFEPDTYTFVGLLCACTHAGLVNEGRKYFYSMEK 446



 Score = 42.4 bits (98), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 48/201 (23%), Positives = 84/201 (41%), Gaps = 14/201 (6%)

Query: 324 LCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKEN 383
           LC      +L    Q+H  +++ N   +  V   LI  +S C  L     VF+   +  N
Sbjct: 25  LCDLHKCSNLDSVNQIHAQVLKANLHQDLFVAPKLIAAFSLCRHLASAVNVFNHVPHP-N 83

Query: 384 SMLWNTMISALTQH-GYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSG---LVQEGL 439
             L+N++I A   +  +       F  M ++ + PD  T   +L ACT      LV+   
Sbjct: 84  VHLYNSIIRAHAHNTSHPSLPFNAFFQMQKNGLFPDNFTYPFLLKACTGPSSLPLVRMIH 143

Query: 440 TYFESMTHDLGI-IPNQEHHACLIELLAQAGCS--DQLMNQLEKMPYEHDSYLWNALHGV 496
            + E       I +PN      LI+  ++ G +  D  M+    M  E D   WN++ G 
Sbjct: 144 AHVEKFGFYGDIFVPNS-----LIDSYSRCGSAGLDGAMSLFLAMK-ERDVVTWNSMIGG 197

Query: 497 CRIHGNIDMGRKVVDQLIDQN 517
               G ++   K+ D++ +++
Sbjct: 198 LVRCGELEGACKLFDEMPERD 218


>gi|345505216|gb|AEN99832.1| chlororespiratory reduction 4 [Capsella bursa-pastoris]
          Length = 617

 Score =  311 bits (798), Expect = 5e-82,   Method: Compositional matrix adjust.
 Identities = 175/534 (32%), Positives = 292/534 (54%), Gaps = 43/534 (8%)

Query: 42  LLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKC 101
           L+ + G+ +   +++ +L+ C+    +K G ++H  L+ T       FL N LI +Y KC
Sbjct: 115 LMLENGVSVDKFSMSLVLKACSRLGFVKGGLQIHGILRKTGL-CSDLFLQNCLIGLYLKC 173

Query: 102 GSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAE--RDVVSWNTMIIG 159
           G    AR++FD++P ++  S+N+M+ GY   G+++ AR LFD M    ++++SWN++I G
Sbjct: 174 GCLGFARQIFDRMPQRDSVSFNSMIDGYVKRGLIESARELFDLMPREVKNLISWNSIISG 233

Query: 160 YAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSN 219
           YA++    +G+          I+ N F+         ++ E                  +
Sbjct: 234 YAQT---SDGV---------DIASNLFA---------EMPE-----------------KD 255

Query: 220 VVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPE 279
           ++  +S++D Y K G + DA+ LFD    RDV+TW TM+ GYAKLG +  A  LF++MP 
Sbjct: 256 LISWNSMIDGYVKHGRIEDAKDLFDAMPRRDVVTWATMIDGYAKLGFVHQAKTLFDQMPH 315

Query: 280 KNPVSWTTLIAGYTRNGLGQKALELFTRM-MILRIRPNQHTFSSCLCACASIVSLKHGKQ 338
           ++ VS+ +++AGY +N    +ALE+F+ M     + P++ T    L A A +  L     
Sbjct: 316 RDVVSYNSMMAGYVQNKYHMEALEIFSDMEKESHLSPDETTLVIVLSAIAQLGRLSKAMD 375

Query: 339 VHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHG 398
           +H +++   F     +  +LIDMYSKCG +     VF+  +NK     WN MI  L  HG
Sbjct: 376 MHLYIVEKQFFLGGKLGVALIDMYSKCGSIQHAMLVFEGIENKSIDH-WNAMIGGLAIHG 434

Query: 399 YDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHH 458
             E A  +   + R S+KPD IT   +LNAC+HSGLV+EGL  FE M     I P  +H+
Sbjct: 435 LGESAFDMLLQIERRSIKPDDITFVGVLNACSHSGLVKEGLLCFELMRRKHKIEPRLQHY 494

Query: 459 ACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNP 518
            C++++L+++G  +   N +++MP E +  +W      C  H   + G  V   LI Q  
Sbjct: 495 GCMVDILSRSGSIELAKNLIQEMPIEPNDVIWRTFLTACNHHKEFETGELVGKHLILQAG 554

Query: 519 QSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSV 572
            + +++ LLS++Y++ GK + V ++R ++ ER+ +K    SWIE++ +VH F V
Sbjct: 555 YNPSSYVLLSNMYASFGKWKDVRRIRTMMKERKIEKIPGCSWIELDGRVHEFFV 608



 Score =  139 bits (349), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 103/378 (27%), Positives = 191/378 (50%), Gaps = 34/378 (8%)

Query: 149 DVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVH 208
           D   WN +I  ++     ++ L  + ++    +S ++FS + +L  C +L  +K   Q+H
Sbjct: 89  DPFLWNAVIKSHSHGKDPKQALLLFCLMLENGVSVDKFSMSLVLKACSRLGFVKGGLQIH 148

Query: 209 GQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDME 268
           G +  TG  S++ + + ++  Y KCG L  AR++FD    RD +++ +M+ GY K G +E
Sbjct: 149 GILRKTGLCSDLFLQNCLIGLYLKCGCLGFARQIFDRMPQRDSVSFNSMIDGYVKRGLIE 208

Query: 269 SASKLFNEMPE--KNPVSWTTLIAGYTRNGLGQK-ALELFTRMMILRIRPNQHTFSSCLC 325
           SA +LF+ MP   KN +SW ++I+GY +   G   A  LF  M      P +      L 
Sbjct: 209 SARELFDLMPREVKNLISWNSIISGYAQTSDGVDIASNLFAEM------PEKD-----LI 257

Query: 326 ACASIVS--LKHGK-QVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKE 382
           +  S++   +KHG+ +    L     R + +  +++ID Y+K G ++  + +FD   ++ 
Sbjct: 258 SWNSMIDGYVKHGRIEDAKDLFDAMPRRDVVTWATMIDGYAKLGFVHQAKTLFDQMPHR- 316

Query: 383 NSMLWNTMISALTQHGYDEQAIRLFHDMVRSS-VKPDKITLAVILNACTHSGLVQEGLTY 441
           + + +N+M++   Q+ Y  +A+ +F DM + S + PD+ TL ++L+A    G +      
Sbjct: 317 DVVSYNSMMAGYVQNKYHMEALEIFSDMEKESHLSPDETTLVIVLSAIAQLGRLS----- 371

Query: 442 FESMTHDLGIIPNQ-----EHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGV 496
            ++M   L I+  Q     +    LI++ ++ G     M   E +  +   + WNA+ G 
Sbjct: 372 -KAMDMHLYIVEKQFFLGGKLGVALIDMYSKCGSIQHAMLVFEGIENKSIDH-WNAMIGG 429

Query: 497 CRIHGNIDMGRKVVDQLI 514
             IHG   +G    D L+
Sbjct: 430 LAIHG---LGESAFDMLL 444



 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 59/207 (28%), Positives = 101/207 (48%), Gaps = 20/207 (9%)

Query: 206 QVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLG 265
           ++H +++ TG + N  +S+ IV A+A       + R +    AR V     + S  +  G
Sbjct: 33  KIHARLITTGLIKNSNLSTRIVLAFAA------SPRPYLAEFARLVFREYHVCSS-SPGG 85

Query: 266 DMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLC 325
           ++E            +P  W  +I  ++     ++AL LF  M+   +  ++ + S  L 
Sbjct: 86  EVE------------DPFLWNAVIKSHSHGKDPKQALLLFCLMLENGVSVDKFSMSLVLK 133

Query: 326 ACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSM 385
           AC+ +  +K G Q+HG L +T   S+  + + LI +Y KCGCL   RQ+FD    + +S+
Sbjct: 134 ACSRLGFVKGGLQIHGILRKTGLCSDLFLQNCLIGLYLKCGCLGFARQIFDRMPQR-DSV 192

Query: 386 LWNTMISALTQHGYDEQAIRLFHDMVR 412
            +N+MI    + G  E A  LF  M R
Sbjct: 193 SFNSMIDGYVKRGLIESARELFDLMPR 219



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 39/131 (29%), Positives = 67/131 (51%), Gaps = 4/131 (3%)

Query: 382 ENSMLWNTMISALTQHGYD-EQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLT 440
           E+  LWN +I + + HG D +QA+ LF  M+ + V  DK +++++L AC+  G V+ GL 
Sbjct: 88  EDPFLWNAVIKSHS-HGKDPKQALLLFCLMLENGVSVDKFSMSLVLKACSRLGFVKGGLQ 146

Query: 441 YFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIH 500
               +    G+  +     CLI L  + GC        ++MP + DS  +N++       
Sbjct: 147 -IHGILRKTGLCSDLFLQNCLIGLYLKCGCLGFARQIFDRMP-QRDSVSFNSMIDGYVKR 204

Query: 501 GNIDMGRKVVD 511
           G I+  R++ D
Sbjct: 205 GLIESARELFD 215


>gi|54695180|dbj|BAD67155.1| PpPPR_98 [Physcomitrella patens]
          Length = 986

 Score =  311 bits (798), Expect = 5e-82,   Method: Compositional matrix adjust.
 Identities = 174/564 (30%), Positives = 293/564 (51%), Gaps = 65/564 (11%)

Query: 31  GQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFL 90
           G++ EA    + + + GI     T   IL  C+   +LK G+++                
Sbjct: 392 GRIDEAFLFFNKMIESGIEPNRVTFMSILGACSSPSALKRGQQIQ--------------- 436

Query: 91  SNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDV 150
            +H+I   +  GSD   R                +LS YA  G +K A  +F+ +++++V
Sbjct: 437 -DHIIEAGY--GSDDRVRTA--------------LLSMYAKCGSLKDAHRVFEKISKQNV 479

Query: 151 VSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQ 210
           V+WN MI  Y +    +  L  ++ L +  I  N  +F  IL +C   + L+L + VH  
Sbjct: 480 VAWNAMITAYVQHEQYDNALATFQALLKEGIKPNSSTFTSILNVCKSSDSLELGKWVHFL 539

Query: 211 VLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESA 270
           ++  G  S++ +S+++V  +  CG                               D+ SA
Sbjct: 540 IMKAGLESDLHVSNALVSMFVNCG-------------------------------DLMSA 568

Query: 271 SKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASI 330
             LFN+MP+++ VSW T+IAG+ ++G  Q A + F  M    I+P++ TF+  L ACAS 
Sbjct: 569 KNLFNDMPKRDLVSWNTIIAGFVQHGKNQVAFDYFKMMQESGIKPDKITFTGLLNACASP 628

Query: 331 VSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTM 390
            +L  G+++H  +    F  + +V + LI MY+KCG + D  QVF     K+N   W +M
Sbjct: 629 EALTEGRRLHALITEAAFDCDVLVGTGLISMYTKCGSIEDAHQVFHKLP-KKNVYSWTSM 687

Query: 391 ISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLG 450
           I+   QHG  ++A+ LF+ M +  VKPD IT    L+AC H+GL++EGL +F+SM  +  
Sbjct: 688 IAGYAQHGRGKEALELFYQMQQEGVKPDWITFVGALSACAHAGLIEEGLHHFQSMK-EFN 746

Query: 451 IIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVV 510
           I P  EH+ C+++L  +AG  ++ +  + KM  E DS +W AL G C++H N+++  K  
Sbjct: 747 IEPRMEHYGCMVDLFGRAGLLNEAVEFIIKMQVEPDSRVWGALLGACQVHLNVELAEKAA 806

Query: 511 DQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAF 570
            + ++ +P  +    +LS+IY+A G  + V K+R+++ +R   K+   SWIE++ KVH F
Sbjct: 807 QKKLELDPNDNGVFVILSNIYAAAGMWKEVAKMRKVMLDRGVVKKPGQSWIEVDGKVHTF 866

Query: 571 SVSDSLHPMRDVLYSVLEQLAGQM 594
              D  HP  + +++ LE+L  +M
Sbjct: 867 YSDDKTHPQTEEIHAELERLHMEM 890



 Score =  187 bits (475), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 151/605 (24%), Positives = 262/605 (43%), Gaps = 113/605 (18%)

Query: 23  SFLSLISK-GQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLT 81
           + L+ +SK GQ +EA+  L+ +    I++  +T + +LQ C + K+L  G+R++ H+K +
Sbjct: 80  AVLNRLSKAGQFNEAMQVLERVDSSHIQIYRQTYSALLQLCIKFKNLGDGERIYNHIKKS 139

Query: 82  QRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNL 141
             + P  F+ N LI+M                               YA  G    A+ +
Sbjct: 140 GVQ-PDIFMRNTLINM-------------------------------YAKCGNTISAKQI 167

Query: 142 FDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEEL 201
           FD+M E+DV SWN ++ GY + G  EE  K ++ + + S+  ++ +F  +L  C     +
Sbjct: 168 FDDMREKDVYSWNLLLGGYVQHGLYEEAFKLHEQMVQDSVKPDKRTFVSMLNACADARNV 227

Query: 202 KLTRQVHGQVLVTGFLSNVVIS-------------------------------SSIVDAY 230
              R+++  +L  G+ +++ +                                +S++   
Sbjct: 228 DKGRELYNLILKAGWDTDLFVGTALINMHIKCGDIGDATKVFDNLPTRDLVTWTSMITGL 287

Query: 231 AKCGELSDARRLFDETDARDV--------------------------------LTW---- 254
           A+ G    A  LF   +   V                                + W    
Sbjct: 288 ARHGRFKQACNLFQRMEEEGVQPDKVAFVSLLRACNHPEALEQGKKVHARMKEVGWDTEI 347

Query: 255 ---TTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMIL 311
              T ++S Y K G ME A ++F+ +  +N VSWT +IAG+ ++G   +A   F +M+  
Sbjct: 348 YVGTAILSMYTKCGSMEDALEVFDLVKGRNVVSWTAMIAGFAQHGRIDEAFLFFNKMIES 407

Query: 312 RIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDG 371
            I PN+ TF S L AC+S  +LK G+Q+   +I   + S+  V ++L+ MY+KCG L D 
Sbjct: 408 GIEPNRVTFMSILGACSSPSALKRGQQIQDHIIEAGYGSDDRVRTALLSMYAKCGSLKDA 467

Query: 372 RQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTH 431
            +VF+   +K+N + WN MI+A  QH   + A+  F  +++  +KP+  T   ILN C  
Sbjct: 468 HRVFEKI-SKQNVVAWNAMITAYVQHEQYDNALATFQALLKEGIKPNSSTFTSILNVCKS 526

Query: 432 SGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWN 491
           S  ++ G  +   +    G+  +      L+ +    G      N    MP + D   WN
Sbjct: 527 SDSLELG-KWVHFLIMKAGLESDLHVSNALVSMFVNCGDLMSAKNLFNDMP-KRDLVSWN 584

Query: 492 ALHGVCRIHGNIDMGRKVVDQLIDQN--PQSSATHGLLSSIYS--ALGKGRLVEKVRQLI 547
            +      HG   +       + +    P      GLL++  S  AL +GR   ++  LI
Sbjct: 585 TIIAGFVQHGKNQVAFDYFKMMQESGIKPDKITFTGLLNACASPEALTEGR---RLHALI 641

Query: 548 NERQF 552
            E  F
Sbjct: 642 TEAAF 646



 Score =  148 bits (374), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 93/380 (24%), Positives = 168/380 (44%), Gaps = 66/380 (17%)

Query: 18  NCLIQSFLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLH 77
           N +I ++   +   Q   A+++   L + GI+  + T   IL  C  S SL+LGK VH  
Sbjct: 483 NAMITAY---VQHEQYDNALATFQALLKEGIKPNSSTFTSILNVCKSSDSLELGKWVHF- 538

Query: 78  LKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKH 137
           L +         +SN L+SM+  CG                                +  
Sbjct: 539 LIMKAGLESDLHVSNALVSMFVNCGD-------------------------------LMS 567

Query: 138 ARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVK 197
           A+NLF++M +RD+VSWNT+I G+ + G  +    ++K+++   I  ++ +F G+L  C  
Sbjct: 568 AKNLFNDMPKRDLVSWNTIIAGFVQHGKNQVAFDYFKMMQESGIKPDKITFTGLLNACAS 627

Query: 198 LEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTM 257
            E L   R++H  +    F  +V++ + ++  Y KCG + DA ++F +   ++V +WT+M
Sbjct: 628 PEALTEGRRLHALITEAAFDCDVLVGTGLISMYTKCGSIEDAHQVFHKLPKKNVYSWTSM 687

Query: 258 VSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQ 317
           ++GYA+ G                                G++ALELF +M    ++P+ 
Sbjct: 688 IAGYAQHGR-------------------------------GKEALELFYQMQQEGVKPDW 716

Query: 318 HTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDL 377
            TF   L ACA    ++ G      +   N          ++D++ + G LN+  +    
Sbjct: 717 ITFVGALSACAHAGLIEEGLHHFQSMKEFNIEPRMEHYGCMVDLFGRAGLLNEAVEFIIK 776

Query: 378 TDNKENSMLWNTMISALTQH 397
              + +S +W  ++ A   H
Sbjct: 777 MQVEPDSRVWGALLGACQVH 796



 Score =  136 bits (342), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 70/291 (24%), Positives = 146/291 (50%), Gaps = 32/291 (10%)

Query: 148 RDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQV 207
           +D    N ++   +K+G   E ++  + +    I     +++ +L +C+K + L    ++
Sbjct: 73  KDTQKANAVLNRLSKAGQFNEAMQVLERVDSSHIQIYRQTYSALLQLCIKFKNLGDGERI 132

Query: 208 HGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDM 267
           +  +  +G   ++ + +++++ YAKCG    A+++FD+   +DV +W  ++ GY + G  
Sbjct: 133 YNHIKKSGVQPDIFMRNTLINMYAKCGNTISAKQIFDDMREKDVYSWNLLLGGYVQHGLY 192

Query: 268 ESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCAC 327
           E A KL  +M + +                               ++P++ TF S L AC
Sbjct: 193 EEAFKLHEQMVQDS-------------------------------VKPDKRTFVSMLNAC 221

Query: 328 ASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLW 387
           A   ++  G++++  +++  + ++  V ++LI+M+ KCG + D  +VFD    ++  + W
Sbjct: 222 ADARNVDKGRELYNLILKAGWDTDLFVGTALINMHIKCGDIGDATKVFDNLPTRD-LVTW 280

Query: 388 NTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEG 438
            +MI+ L +HG  +QA  LF  M    V+PDK+    +L AC H   +++G
Sbjct: 281 TSMITGLARHGRFKQACNLFQRMEEEGVQPDKVAFVSLLRACNHPEALEQG 331


>gi|297847366|ref|XP_002891564.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297337406|gb|EFH67823.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 596

 Score =  311 bits (798), Expect = 5e-82,   Method: Compositional matrix adjust.
 Identities = 160/479 (33%), Positives = 258/479 (53%), Gaps = 34/479 (7%)

Query: 118 NLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLR 177
           +LF  N+++SGY+N G+ +    +FD   ++DVVSW  MI G+ ++ +  E + ++  ++
Sbjct: 137 DLFVRNSLISGYSNCGLFEFGSRVFDGTEDKDVVSWTAMIDGFVRNDSSLEAMTYFVEMK 196

Query: 178 RFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLS-NVVISSSIVDAYAKCGEL 236
           R  ++ NE +   +L    K E+++  R +HG  L  G +  +V I SS+VD Y      
Sbjct: 197 RSGVAANEMTVVSVLKATRKAEDVRFGRSIHGFYLEAGRVRCDVFIGSSLVDMYG----- 251

Query: 237 SDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNG 296
                                     K G  + A K+F+EMP +N V+WT LIAGY +  
Sbjct: 252 --------------------------KCGCYDDAQKVFDEMPSRNVVTWTALIAGYVQGR 285

Query: 297 LGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMS 356
             +K + +F  M+   + PN+ T SS L ACA + +L  G++VH ++I+ +   NT V +
Sbjct: 286 CFEKGMFVFEEMLKSDVAPNEKTLSSVLSACAHVGALHRGRRVHCYVIKNSIEINTTVGT 345

Query: 357 SLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVK 416
           +LID Y+KCGCL +   VF+    K N   W  MI+    HGY   A+ LFH M+ S V 
Sbjct: 346 TLIDFYAKCGCLEEAILVFERLREK-NVYTWTAMINGFAAHGYAIGAVDLFHTMLSSHVS 404

Query: 417 PDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMN 476
           P+++T  V+L+AC H GLV+EG   F SM     + P  +H+AC+++L  + G  ++   
Sbjct: 405 PNEVTFIVVLSACAHGGLVEEGRRLFLSMKERFNLEPKADHYACMVDLFGRKGLLEEAKA 464

Query: 477 QLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGK 536
            +E+MP E  + +W AL G C IH + ++G+    ++I   P  S  + LL+++YS    
Sbjct: 465 LIERMPMEPTNAVWGALFGSCLIHKDYELGKYAASRVIKLQPSHSGRYTLLANLYSESQN 524

Query: 537 GRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMR-DVLYSVLEQLAGQM 594
              V +VR+ + ++Q  K    SWIE++ K+H F   D   P+  D LY  L+ +  QM
Sbjct: 525 WDDVARVRKQMKDQQVVKSPGCSWIEVKGKLHEFIAFDDKKPLESDDLYKTLDNVGVQM 583



 Score =  149 bits (376), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 105/420 (25%), Positives = 189/420 (45%), Gaps = 48/420 (11%)

Query: 135 MKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKF--YKVLRRFSISCNEFSFAGIL 192
            ++AR L   +    +  W++++  ++    +   L F  Y+ +RR  +  +  +F  +L
Sbjct: 52  FRYARRLLCQIQTPSIQLWDSLVGHFSGRVTLNRRLSFLSYRQMRRNGVVPSRHTFPPLL 111

Query: 193 TICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVL 252
               KL +     Q H  +L  GF S++ + +S++  Y+ CG      R+FD T+ +DV+
Sbjct: 112 KAVFKLRDAN-PFQFHAHILKFGFDSDLFVRNSLISGYSNCGLFEFGSRVFDGTEDKDVV 170

Query: 253 TWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILR 312
           +WT M                               I G+ RN    +A+  F  M    
Sbjct: 171 SWTAM-------------------------------IDGFVRNDSSLEAMTYFVEMKRSG 199

Query: 313 IRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTN-FRSNTIVMSSLIDMYSKCGCLNDG 371
           +  N+ T  S L A      ++ G+ +HGF +     R +  + SSL+DMY KCGC +D 
Sbjct: 200 VAANEMTVVSVLKATRKAEDVRFGRSIHGFYLEAGRVRCDVFIGSSLVDMYGKCGCYDDA 259

Query: 372 RQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTH 431
           ++VFD   ++ N + W  +I+   Q    E+ + +F +M++S V P++ TL+ +L+AC H
Sbjct: 260 QKVFDEMPSR-NVVTWTALIAGYVQGRCFEKGMFVFEEMLKSDVAPNEKTLSSVLSACAH 318

Query: 432 SGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWN 491
            G +  G      +  +  I  N      LI+  A+ GC ++ +   E++  E + Y W 
Sbjct: 319 VGALHRGRRVHCYVIKN-SIEINTTVGTTLIDFYAKCGCLEEAILVFERLR-EKNVYTWT 376

Query: 492 ALHGVCRIH----GNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLI 547
           A+      H    G +D+   ++   +  N  +         + SA   G LVE+ R+L 
Sbjct: 377 AMINGFAAHGYAIGAVDLFHTMLSSHVSPNEVT------FIVVLSACAHGGLVEEGRRLF 430



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 78/366 (21%), Positives = 156/366 (42%), Gaps = 67/366 (18%)

Query: 35  EAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHL 94
           EA++    + + G+     T+  +L+   +++ ++ G+ +H       R     F+ + L
Sbjct: 187 EAMTYFVEMKRSGVAANEMTVVSVLKATRKAEDVRFGRSIHGFYLEAGRVRCDVFIGSSL 246

Query: 95  ISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWN 154
           + MY KCG   DA+KVFD++P +N+ ++  +++GY      +    +F+ M + DV    
Sbjct: 247 VDMYGKCGCYDDAQKVFDEMPSRNVVTWTALIAGYVQGRCFEKGMFVFEEMLKSDVAP-- 304

Query: 155 TMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVT 214
                                        NE + + +L+ C  +  L   R+VH  V+  
Sbjct: 305 -----------------------------NEKTLSSVLSACAHVGALHRGRRVHCYVIKN 335

Query: 215 GFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLF 274
               N  + ++++D YAKCG L +A  +F+    ++V TWT M++G+A            
Sbjct: 336 SIEINTTVGTTLIDFYAKCGCLEEAILVFERLREKNVYTWTAMINGFAA----------- 384

Query: 275 NEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLK 334
                               +G    A++LF  M+   + PN+ TF   L ACA    ++
Sbjct: 385 --------------------HGYAIGAVDLFHTMLSSHVSPNEVTFIVVLSACAHGGLVE 424

Query: 335 HGKQVHGFLI---RTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMI 391
            G+++  FL    R N        + ++D++ + G L + + + +    +  + +W  + 
Sbjct: 425 EGRRL--FLSMKERFNLEPKADHYACMVDLFGRKGLLEEAKALIERMPMEPTNAVWGALF 482

Query: 392 SALTQH 397
            +   H
Sbjct: 483 GSCLIH 488


>gi|147798551|emb|CAN72187.1| hypothetical protein VITISV_012899 [Vitis vinifera]
          Length = 690

 Score =  311 bits (798), Expect = 5e-82,   Method: Compositional matrix adjust.
 Identities = 190/597 (31%), Positives = 308/597 (51%), Gaps = 72/597 (12%)

Query: 18  NCLIQSFLSLISKGQ-LSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHL 76
           N +I+SF    S G+   EA    +L+ + G+ +   + + +L+ C+    +K G ++H 
Sbjct: 147 NAIIKSF----SHGEDPXEAFXIFNLMLENGVCVDKFSFSLVLKACSRLGLIKEGMQIHG 202

Query: 77  HLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMK 136
            L   +  +   FL N L+ +Y +CG    AR++FD++  ++  S+N+M+ GY   GM+K
Sbjct: 203 LLGXMEIGS-DVFLQNCLMCLYLRCGCLGIARQLFDRMMXRDSVSFNSMIDGYVKHGMVK 261

Query: 137 HARNLFD--NMAERDVVSWNTMIIGYAKSGAVEEGLK-----FYKVLRRFSISCNEFSFA 189
            AR LFD   M +++++SWN+MI GYA+S   EEGL+     F ++ +R  IS N     
Sbjct: 262 SARELFDVMPMEQKNLISWNSMISGYARS---EEGLRVAWELFEEMPKRDLISWN----- 313

Query: 190 GILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDAR 249
                                              S++D   KCG++ +A  LF+    R
Sbjct: 314 -----------------------------------SMIDGCVKCGKMENAHHLFNXMPKR 338

Query: 250 DVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMM 309
           DV++W  MV GYAKLG+++ A  LF+EMPE++ +S   ++AGY +NG   +AL  F  M+
Sbjct: 339 DVVSWANMVDGYAKLGEIDIARGLFDEMPERDVISCNAMMAGYVQNGXLMEALXFFHDML 398

Query: 310 ILR-IRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCL 368
             + + P   T    L A A +     G  +H ++    F  +  +  +LIDMY+KCG +
Sbjct: 399 SXKELFPXNATLLITLSAIAQLGHFDEGVALHCYIEDNGFSLSEKLGXALIDMYAKCGSI 458

Query: 369 NDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNA 428
           ++      L D+      WN +J  L  HG  E A  LF +M +  VKPB IT   +LNA
Sbjct: 459 DNA-----LIDH------WNAIJXGLAIHGLGEVAFELFMEMEKLFVKPBDITFIGVLNA 507

Query: 429 CTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSY 488
           C H+GLV+EGL  F  M     + P  +H+ C++++L +AG  ++    +EKMP E +  
Sbjct: 508 CNHAGLVKEGLMXFXLMRXVHKVEPKLQHYGCMVDILGRAGHVEEXKKFVEKMPIEPNDV 567

Query: 489 LWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLIN 548
           +W  L   CR H N  +G  V   LI  +  + +++ LLS+IY+  G    V ++R ++ 
Sbjct: 568 VWRTLLSACRNHENFTIGEPVAKHLISVDSYNPSSYVLLSNIYAXFGMWNDVYRIRMMMK 627

Query: 549 ERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQMGEDAPSLDADR 605
           +R  KK    S IE+E  VH F V D  HP R  + ++    + ++G D   L + R
Sbjct: 628 QRDLKKIPGCSQIELEGNVHEFFVRDKSHPQRLPIVNI----SAELGTDDQKLTSHR 680



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 94/353 (26%), Positives = 169/353 (47%), Gaps = 25/353 (7%)

Query: 153 WNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVL 212
           WN +I  ++      E    + ++    +  ++FSF+ +L  C +L  +K   Q+HG + 
Sbjct: 146 WNAIIKSFSHGEDPXEAFXIFNLMLENGVCVDKFSFSLVLKACSRLGLIKEGMQIHGLLG 205

Query: 213 VTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASK 272
                S+V + + ++  Y +CG L  AR+LFD    RD +++ +M+ GY K G ++SA +
Sbjct: 206 XMEIGSDVFLQNCLMCLYLRCGCLGIARQLFDRMMXRDSVSFNSMIDGYVKHGMVKSARE 265

Query: 273 LFNEMP--EKNPVSWTTLIAGYTRNGLGQK-ALELFTRMMILRIRPNQHTFSSCLCACAS 329
           LF+ MP  +KN +SW ++I+GY R+  G + A ELF  M    +         C+  C  
Sbjct: 266 LFDVMPMEQKNLISWNSMISGYARSEEGLRVAWELFEEMPKRDLISWNSMIDGCV-KCGK 324

Query: 330 IVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNT 389
           + +  H       L     + + +  ++++D Y+K G ++  R +FD    ++  +  N 
Sbjct: 325 MENAHH-------LFNXMPKRDVVSWANMVDGYAKLGEIDIARGLFDEMPERD-VISCNA 376

Query: 390 MISALTQHGYDEQAIRLFHDMV-RSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHD 448
           M++   Q+G   +A+  FHDM+    + P   TL + L+A    G   EG+        D
Sbjct: 377 MMAGYVQNGXLMEALXFFHDMLSXKELFPXNATLLITLSAIAQLGHFDEGVA-LHCYIED 435

Query: 449 LGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHG 501
            G   +++    LI++ A+ G  D  +        +H    WNA+     IHG
Sbjct: 436 NGFSLSEKLGXALIDMYAKCGSIDNAL-------IDH----WNAIJXGLAIHG 477



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 79/336 (23%), Positives = 145/336 (43%), Gaps = 49/336 (14%)

Query: 192 LTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGE---LSDARRLFDETDA 248
           L +  K + L    Q+H +++ TGF++N  +++ I+  ++       +  AR LF     
Sbjct: 74  LILLPKSKTLHDVNQIHSRLITTGFINNPSLTTRIILNFSSSSHKPLVEFARYLF----- 128

Query: 249 RDVLTWTTMVSGYAKLGDMESASKLFNEMPEK--NPVSWTTLIAGYTRNGLGQKALELFT 306
                                 S+ F     K  NP  W  +I  ++      +A  +F 
Sbjct: 129 ---------------------MSRHFGRKHRKQDNPFLWNAIIKSFSHGEDPXEAFXIFN 167

Query: 307 RMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCG 366
            M+   +  ++ +FS  L AC+ +  +K G Q+HG L      S+  + + L+ +Y +CG
Sbjct: 168 LMLENGVCVDKFSFSLVLKACSRLGLIKEGMQIHGLLGXMEIGSDVFLQNCLMCLYLRCG 227

Query: 367 CLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVIL 426
           CL   RQ+FD    ++ S+ +N+MI    +HG  + A  LF  M     + + I+   ++
Sbjct: 228 CLGIARQLFDRMMXRD-SVSFNSMIDGYVKHGMVKSARELFDVMPME--QKNLISWNSMI 284

Query: 427 NACTHSGLVQEGL----TYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMP 482
           +    S   +EGL      FE M     I  N     C+     + G  +   +    MP
Sbjct: 285 SGYARS---EEGLRVAWELFEEMPKRDLISWNSMIDGCV-----KCGKMENAHHLFNXMP 336

Query: 483 YEHDSYLW-NALHGVCRIHGNIDMGRKVVDQLIDQN 517
            + D   W N + G  ++ G ID+ R + D++ +++
Sbjct: 337 -KRDVVSWANMVDGYAKL-GEIDIARGLFDEMPERD 370


>gi|449517761|ref|XP_004165913.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g06145-like [Cucumis sativus]
          Length = 600

 Score =  311 bits (798), Expect = 5e-82,   Method: Compositional matrix adjust.
 Identities = 169/513 (32%), Positives = 279/513 (54%), Gaps = 36/513 (7%)

Query: 116 VKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFY-K 174
           +++ F  +  +S    L  + +    F  M   +V  +N MI G+   G     L+ Y  
Sbjct: 68  IQDCFLVHQFISASFALNSVHYPVFAFTQMENPNVFVYNAMIKGFVYCGYPFRALQCYVH 127

Query: 175 VLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCG 234
           +L   ++    ++F+ ++  C  +  ++L + VH  +   GF S++ + +++VD Y+K  
Sbjct: 128 MLEESNVLPTSYTFSSLVKACTFMCAVELGQMVHCHIWKKGFESHLFVQTALVDFYSKLE 187

Query: 235 ELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTR 294
            LS+AR++FDE   RD   WT M+S  A++GDM+SA KLF EMPE+N  +W T+I GYTR
Sbjct: 188 ILSEARKVFDEMCERDAFAWTAMLSALARVGDMDSARKLFEEMPERNTATWNTMIDGYTR 247

Query: 295 -------------------------------NGLGQKALELFTRMMILRIRPNQHTFSSC 323
                                          N   Q AL +++ M +  I P++ T S+ 
Sbjct: 248 LGNVESAELLFNQMPTKDIISWTTMITCYSQNKQYQDALAIYSEMRLNGIIPDEVTMSTV 307

Query: 324 LCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVF-DLTDNKE 382
             ACA I +L+ GK++H +++      +  + S+L+DMY+KCG L+    +F  LTD  +
Sbjct: 308 ASACAHIGALELGKEIHHYVMSQGLNLDVYIGSALVDMYAKCGSLDLSLLIFFKLTD--K 365

Query: 383 NSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYF 442
           N   WN +I  L  HGY E+A+R+F  M R  + P+ +T   IL+ACTH+GLV EG + F
Sbjct: 366 NLYCWNAVIEGLAVHGYAEKALRMFAIMEREKIMPNGVTFISILSACTHAGLVDEGRSRF 425

Query: 443 ESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGN 502
            SMT D  I P+  H+ C++++L+++G  ++ +  ++ M +E +S +W AL   C++HGN
Sbjct: 426 LSMTRDYDIRPDIRHYGCMVDMLSKSGYLNEALELIKSMEFEPNSIIWGALLNGCKLHGN 485

Query: 503 IDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQF-KKEQAISWI 561
            ++    V+QL+   P +S  + LL S+Y+       V  +R ++ E+   KK    SWI
Sbjct: 486 CEIAEDAVEQLMILEPMNSGHYNLLVSMYAEEKDWMEVAHIRSMMKEKGVEKKYPGSSWI 545

Query: 562 EIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQM 594
           E+E  +H FS S   HP  D +Y +L +L GQ+
Sbjct: 546 ELEGTIHQFSASADSHPDSDKIYFILTELDGQL 578



 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 100/394 (25%), Positives = 173/394 (43%), Gaps = 64/394 (16%)

Query: 42  LLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKC 101
           +L +  +   + T + +++ C    +++LG+ VH H+   +      F+   L+  Y K 
Sbjct: 128 MLEESNVLPTSYTFSSLVKACTFMCAVELGQMVHCHI-WKKGFESHLFVQTALVDFYSKL 186

Query: 102 GSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYA 161
               +ARKVFD++  ++ F++  MLS  A +G M  AR LF+ M ER+  +WNTMI GY 
Sbjct: 187 EILSEARKVFDEMCERDAFAWTAMLSALARVGDMDSARKLFEEMPERNTATWNTMIDGYT 246

Query: 162 KSGAVE-------------------------------EGLKFYKVLRRFSISCNEFSFAG 190
           + G VE                               + L  Y  +R   I  +E + + 
Sbjct: 247 RLGNVESAELLFNQMPTKDIISWTTMITCYSQNKQYQDALAIYSEMRLNGIIPDEVTMST 306

Query: 191 ILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARD 250
           + + C  +  L+L +++H  V+  G   +V I S++VD YAKCG L  +  +F +   ++
Sbjct: 307 VASACAHIGALELGKEIHHYVMSQGLNLDVYIGSALVDMYAKCGSLDLSLLIFFKLTDKN 366

Query: 251 VLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMI 310
           +  W  ++ G A                                +G  +KAL +F  M  
Sbjct: 367 LYCWNAVIEGLAV-------------------------------HGYAEKALRMFAIMER 395

Query: 311 LRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRT-NFRSNTIVMSSLIDMYSKCGCLN 369
            +I PN  TF S L AC     +  G+     + R  + R +      ++DM SK G LN
Sbjct: 396 EKIMPNGVTFISILSACTHAGLVDEGRSRFLSMTRDYDIRPDIRHYGCMVDMLSKSGYLN 455

Query: 370 DGRQVFDLTDNKENSMLWNTMISALTQHGYDEQA 403
           +  ++    + + NS++W  +++    HG  E A
Sbjct: 456 EALELIKSMEFEPNSIIWGALLNGCKLHGNCEIA 489



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 41/155 (26%), Positives = 77/155 (49%), Gaps = 6/155 (3%)

Query: 32  QLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLS 91
           Q  +A++    +   GI     T++ +   CA   +L+LGK +H H  ++Q      ++ 
Sbjct: 281 QYQDALAIYSEMRLNGIIPDEVTMSTVASACAHIGALELGKEIH-HYVMSQGLNLDVYIG 339

Query: 92  NHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDV- 150
           + L+ MY KCGS   +  +F K+  KNL+ +N ++ G A  G  + A  +F  M    + 
Sbjct: 340 SALVDMYAKCGSLDLSLLIFFKLTDKNLYCWNAVIEGLAVHGYAEKALRMFAIMEREKIM 399

Query: 151 ---VSWNTMIIGYAKSGAVEEGL-KFYKVLRRFSI 181
              V++ +++     +G V+EG  +F  + R + I
Sbjct: 400 PNGVTFISILSACTHAGLVDEGRSRFLSMTRDYDI 434


>gi|28876027|gb|AAO60036.1| hypothetical protein [Oryza sativa Japonica Group]
          Length = 704

 Score =  311 bits (798), Expect = 5e-82,   Method: Compositional matrix adjust.
 Identities = 172/581 (29%), Positives = 293/581 (50%), Gaps = 42/581 (7%)

Query: 24  FLSLISKGQLSEAISSLDLLAQRGIRL--PAETLAFILQQCAESKSLKLGKRVHLHLKLT 81
           F+ L + G+L +A+        RG+     A   + + + C   ++L+  +++H     T
Sbjct: 84  FVRLCATGRLRDALRR----PFRGVLWSDAARLFSHLFRAC---RALRPLRQLHA-FAAT 135

Query: 82  QRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNL 141
                  F +NHL+  Y   G    AR++F++IP +N+ S+N +  GY   G +  AR L
Sbjct: 136 SGAATDRFTANHLMLAYADLGDLTAARELFERIPRRNVMSWNILFGGYIKNGDLGGARKL 195

Query: 142 FDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEEL 201
           FD M ER+V +WN M+ G    G  EE L F+  +RR  +  +EF    +   C  L ++
Sbjct: 196 FDEMPERNVATWNAMVAGLTNLGFDEESLGFFLDMRREGMHPDEFGLGSVFRCCAGLRDV 255

Query: 202 KLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGY 261
              RQVH  V+ +G   ++ + SS+   Y +CG L                         
Sbjct: 256 VTGRQVHAYVVRSGLDRDMCVGSSLAHMYMRCGCL------------------------- 290

Query: 262 AKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFS 321
                 +    +   +P  + VS  T+IAG T+NG  + ALE F  M  + +  +  TF 
Sbjct: 291 ------QEGEAVLRMLPSLSIVSCNTIIAGRTQNGDSEGALEYFCMMRSVGVAADVVTFV 344

Query: 322 SCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNK 381
           S + +C+ + +L  G+Q+HG +++        VM+ L+ MYS+CGCL D  +VF      
Sbjct: 345 SAISSCSDLAALAQGQQIHGQVMKAGVDKVVPVMTCLVHMYSRCGCLGDSERVF-FGYCG 403

Query: 382 ENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTY 441
            ++ L + MISA   HG+ ++AI LF  M+    +P  +T   +L AC+HSGL +EG+  
Sbjct: 404 SDTFLLSAMISAYGFHGHGQKAIELFKQMMNGGAEPSDVTFLALLYACSHSGLKEEGMDC 463

Query: 442 FESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHG 501
           FE MT   G+ P+ +H+ C+++LL ++GC D+    +  MP   D  +W  L   C+   
Sbjct: 464 FELMTKTYGMQPSVKHYTCVVDLLGRSGCLDEAEALILSMPLTPDGVIWKTLLSACKTQK 523

Query: 502 NIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWI 561
           N DM  ++  ++I+ +P  SA++ LLS+I +   +   V +VR+ + +   +KE  +SW+
Sbjct: 524 NFDMAERIAKRVIELDPHDSASYVLLSNIRATSRRWGDVSEVRKAMRDNNVRKEPGVSWV 583

Query: 562 EIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQMGEDAPSLD 602
           E++  +H F   D  HP +  +   LE++  ++ +   S D
Sbjct: 584 ELKGHIHQFCTGDESHPRQKEIDECLEEMMAKIRQCGYSPD 624



 Score = 44.3 bits (103), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 36/173 (20%), Positives = 80/173 (46%), Gaps = 8/173 (4%)

Query: 13  KNLPNNCLIQSFLSLISKGQLSEAISSLDLLAQ-RGIRLPAETLAFI--LQQCAESKSLK 69
           + LP+  ++     +  + Q  ++  +L+     R + + A+ + F+  +  C++  +L 
Sbjct: 298 RMLPSLSIVSCNTIIAGRTQNGDSEGALEYFCMMRSVGVAADVVTFVSAISSCSDLAALA 357

Query: 70  LGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGY 129
            G+++H  +           ++  L+ MY +CG   D+ +VF      + F  + M+S Y
Sbjct: 358 QGQQIHGQVMKAGVDKVVPVMTC-LVHMYSRCGCLGDSERVFFGYCGSDTFLLSAMISAY 416

Query: 130 ANLGMMKHARNLFDNM----AERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRR 178
              G  + A  LF  M    AE   V++  ++   + SG  EEG+  ++++ +
Sbjct: 417 GFHGHGQKAIELFKQMMNGGAEPSDVTFLALLYACSHSGLKEEGMDCFELMTK 469


>gi|108711755|gb|ABF99550.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|215697380|dbj|BAG91374.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 646

 Score =  311 bits (797), Expect = 6e-82,   Method: Compositional matrix adjust.
 Identities = 172/581 (29%), Positives = 293/581 (50%), Gaps = 42/581 (7%)

Query: 24  FLSLISKGQLSEAISSLDLLAQRGIRL--PAETLAFILQQCAESKSLKLGKRVHLHLKLT 81
           F+ L + G+L +A+        RG+     A   + + + C   ++L+  +++H     T
Sbjct: 18  FVRLCATGRLRDALRR----PFRGVLWSDAARLFSHLFRAC---RALRPLRQLHA-FAAT 69

Query: 82  QRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNL 141
                  F +NHL+  Y   G    AR++F++IP +N+ S+N +  GY   G +  AR L
Sbjct: 70  SGAATDRFTANHLMLAYADLGDLTAARELFERIPRRNVMSWNILFGGYIKNGDLGGARKL 129

Query: 142 FDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEEL 201
           FD M ER+V +WN M+ G    G  EE L F+  +RR  +  +EF    +   C  L ++
Sbjct: 130 FDEMPERNVATWNAMVAGLTNLGFDEESLGFFLDMRREGMHPDEFGLGSVFRCCAGLRDV 189

Query: 202 KLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGY 261
              RQVH  V+ +G   ++ + SS+   Y +CG L                         
Sbjct: 190 VTGRQVHAYVVRSGLDRDMCVGSSLAHMYMRCGCL------------------------- 224

Query: 262 AKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFS 321
                 +    +   +P  + VS  T+IAG T+NG  + ALE F  M  + +  +  TF 
Sbjct: 225 ------QEGEAVLRMLPSLSIVSCNTIIAGRTQNGDSEGALEYFCMMRSVGVAADVVTFV 278

Query: 322 SCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNK 381
           S + +C+ + +L  G+Q+HG +++        VM+ L+ MYS+CGCL D  +VF      
Sbjct: 279 SAISSCSDLAALAQGQQIHGQVMKAGVDKVVPVMTCLVHMYSRCGCLGDSERVF-FGYCG 337

Query: 382 ENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTY 441
            ++ L + MISA   HG+ ++AI LF  M+    +P  +T   +L AC+HSGL +EG+  
Sbjct: 338 SDTFLLSAMISAYGFHGHGQKAIELFKQMMNGGAEPSDVTFLALLYACSHSGLKEEGMDC 397

Query: 442 FESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHG 501
           FE MT   G+ P+ +H+ C+++LL ++GC D+    +  MP   D  +W  L   C+   
Sbjct: 398 FELMTKTYGMQPSVKHYTCVVDLLGRSGCLDEAEALILSMPLTPDGVIWKTLLSACKTQK 457

Query: 502 NIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWI 561
           N DM  ++  ++I+ +P  SA++ LLS+I +   +   V +VR+ + +   +KE  +SW+
Sbjct: 458 NFDMAERIAKRVIELDPHDSASYVLLSNIRATSRRWGDVSEVRKAMRDNNVRKEPGVSWV 517

Query: 562 EIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQMGEDAPSLD 602
           E++  +H F   D  HP +  +   LE++  ++ +   S D
Sbjct: 518 ELKGHIHQFCTGDESHPRQKEIDECLEEMMAKIRQCGYSPD 558



 Score = 45.1 bits (105), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 36/173 (20%), Positives = 80/173 (46%), Gaps = 8/173 (4%)

Query: 13  KNLPNNCLIQSFLSLISKGQLSEAISSLDLLAQ-RGIRLPAETLAFI--LQQCAESKSLK 69
           + LP+  ++     +  + Q  ++  +L+     R + + A+ + F+  +  C++  +L 
Sbjct: 232 RMLPSLSIVSCNTIIAGRTQNGDSEGALEYFCMMRSVGVAADVVTFVSAISSCSDLAALA 291

Query: 70  LGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGY 129
            G+++H  +           ++  L+ MY +CG   D+ +VF      + F  + M+S Y
Sbjct: 292 QGQQIHGQVMKAGVDKVVPVMTC-LVHMYSRCGCLGDSERVFFGYCGSDTFLLSAMISAY 350

Query: 130 ANLGMMKHARNLFDNM----AERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRR 178
              G  + A  LF  M    AE   V++  ++   + SG  EEG+  ++++ +
Sbjct: 351 GFHGHGQKAIELFKQMMNGGAEPSDVTFLALLYACSHSGLKEEGMDCFELMTK 403


>gi|225451356|ref|XP_002275085.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04750,
           mitochondrial-like [Vitis vinifera]
          Length = 654

 Score =  311 bits (797), Expect = 6e-82,   Method: Compositional matrix adjust.
 Identities = 159/474 (33%), Positives = 266/474 (56%), Gaps = 4/474 (0%)

Query: 123 NNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSIS 182
           N ++  Y     M  A  +F  MA  D VS+N MI GYAK G   E LKF   +    + 
Sbjct: 166 NTLMKIYLENEKMGLAYQVFQQMAAPDAVSFNIMIFGYAKKGHNIEALKFLHEMVGLGLK 225

Query: 183 CNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFL--SNVVISSSIVDAYAKCGELSDAR 240
            +EF+  G+L  C +L + +L + VH  +   G +  SN++++++++D Y KC EL  A+
Sbjct: 226 PDEFTMLGLLICCGRLGDAQLGKSVHAWIERRGLIKSSNLILNNALLDMYVKCKELRIAQ 285

Query: 241 RLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQK 300
            +F+    +D ++W TM++GYAK+G++E A   F +MP ++ VSW ++IAGY + G    
Sbjct: 286 SIFNVIVRKDTISWNTMIAGYAKVGNLEIAHNFFEDMPCRDLVSWNSIIAGYAQKGDCLM 345

Query: 301 ALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLID 360
              LF  M+   I P+  T  + + A A I +L HG+ +HG+++R   + +  + S+ ID
Sbjct: 346 VQRLFENMVAENIWPDFVTIINLVSAAAEIGALHHGRWIHGWVVRMQMKIDAFLGSAFID 405

Query: 361 MYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKI 420
           MY KCG +     VF     K+ + +W TMI+    HGY  +A++LF++M +  V P+++
Sbjct: 406 MYWKCGSIKRACMVFREVTEKDVT-VWTTMITGFAFHGYGSKALQLFYEM-QEYVMPNQV 463

Query: 421 TLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEK 480
           T   +L AC+HSG V +GL  F SM    GI P  EH+ CL++LL ++G   ++ + +E 
Sbjct: 464 TFVAVLTACSHSGFVSQGLRIFNSMKERYGIEPGVEHYGCLVDLLGRSGRFSEVKDVIEM 523

Query: 481 MPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLV 540
           MP +    +W A+   CR +GNI++      +L+   P+    + LLS+IY+  G+ +  
Sbjct: 524 MPMKPSRSIWGAVLSACRAYGNIEIAEIAGKELLKLEPEKEGGYVLLSNIYATSGRWKHS 583

Query: 541 EKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQM 594
           +K+R+++  R  KK    S + ++  +H F  +D  HP    + S+L  L  +M
Sbjct: 584 DKIREIMESRGVKKTAGCSSVVVDGIIHEFVAADKRHPRWIEIQSILFCLKSEM 637



 Score =  142 bits (357), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 99/376 (26%), Positives = 172/376 (45%), Gaps = 34/376 (9%)

Query: 30  KGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHL-KLTQRKTPTT 88
           KG   EA+  L  +   G++    T+  +L  C      +LGK VH  + +    K+   
Sbjct: 206 KGHNIEALKFLHEMVGLGLKPDEFTMLGLLICCGRLGDAQLGKSVHAWIERRGLIKSSNL 265

Query: 89  FLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAER 148
            L+N L+ MY KC     A+ +F+ I  K+  S+N M++GYA +G ++ A N F++M  R
Sbjct: 266 ILNNALLDMYVKCKELRIAQSIFNVIVRKDTISWNTMIAGYAKVGNLEIAHNFFEDMPCR 325

Query: 149 DVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVH 208
           D+VSWN++I GYA+ G      + ++ +   +I  +  +   +++   ++  L   R +H
Sbjct: 326 DLVSWNSIIAGYAQKGDCLMVQRLFENMVAENIWPDFVTIINLVSAAAEIGALHHGRWIH 385

Query: 209 GQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDME 268
           G V+      +  + S+ +D Y KCG +  A  +F E   +DV  WTTM++G+A  G   
Sbjct: 386 GWVVRMQMKIDAFLGSAFIDMYWKCGSIKRACMVFREVTEKDVTVWTTMITGFAFHGYGS 445

Query: 269 SASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACA 328
            A +LF EM E                                 + PNQ TF + L AC+
Sbjct: 446 KALQLFYEMQE--------------------------------YVMPNQVTFVAVLTACS 473

Query: 329 SIVSLKHGKQVHGFLI-RTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLW 387
               +  G ++   +  R            L+D+  + G  ++ + V ++   K +  +W
Sbjct: 474 HSGFVSQGLRIFNSMKERYGIEPGVEHYGCLVDLLGRSGRFSEVKDVIEMMPMKPSRSIW 533

Query: 388 NTMISALTQHGYDEQA 403
             ++SA   +G  E A
Sbjct: 534 GAVLSACRAYGNIEIA 549



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 86/380 (22%), Positives = 154/380 (40%), Gaps = 79/380 (20%)

Query: 100 KCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMA---------ERDV 150
           KC +    +++  +I   NL      +S       + H  NL  +MA           ++
Sbjct: 40  KCSTRDHFKQILAQIMRINLIGQTFPMSRLILFSAITHPENL--DMAVLLFRHHTPHPNL 97

Query: 151 VSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQ 210
             +NTMI   A S ++ +   FY  L    I  N  +F  +L     L ++    Q+H  
Sbjct: 98  YIYNTMI--SALSLSLNQSFAFYNSLLSSCIYPNRSTFLFLLQASKFLSQVM---QIHCH 152

Query: 211 VLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESA 270
            ++TG      + ++++  Y +  ++  A ++F +  A D +++  M+ GYAK G    A
Sbjct: 153 AIITGSFYYGYLQNTLMKIYLENEKMGLAYQVFQQMAAPDAVSFNIMIFGYAKKGHNIEA 212

Query: 271 SKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASI 330
            K  +EM                  GLG              ++P++ T    L  C  +
Sbjct: 213 LKFLHEMV-----------------GLG--------------LKPDEFTMLGLLICCGRL 241

Query: 331 VSLKHGKQVHGFLIRTNF--RSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKE----NS 384
              + GK VH ++ R      SN I+ ++L+DMY KC  L   + +F++   K+    N+
Sbjct: 242 GDAQLGKSVHAWIERRGLIKSSNLILNNALLDMYVKCKELRIAQSIFNVIVRKDTISWNT 301

Query: 385 ML--------------------------WNTMISALTQHGYDEQAIRLFHDMVRSSVKPD 418
           M+                          WN++I+   Q G      RLF +MV  ++ PD
Sbjct: 302 MIAGYAKVGNLEIAHNFFEDMPCRDLVSWNSIIAGYAQKGDCLMVQRLFENMVAENIWPD 361

Query: 419 KITLAVILNACTHSGLVQEG 438
            +T+  +++A    G +  G
Sbjct: 362 FVTIINLVSAAAEIGALHHG 381


>gi|356568696|ref|XP_003552546.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like [Glycine max]
          Length = 604

 Score =  311 bits (797), Expect = 7e-82,   Method: Compositional matrix adjust.
 Identities = 179/537 (33%), Positives = 266/537 (49%), Gaps = 69/537 (12%)

Query: 54  TLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDK 113
           T  F+L+ C+   SL L + +H H++         F+ N LI  Y +CG           
Sbjct: 122 TYPFLLKACSGPSSLPLVRMIHAHVEKIGFYG-DIFVPNSLIDSYSRCG----------- 169

Query: 114 IPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFY 173
                    N  L G         A +LF  M ERDVV+WN+MI G  + G ++   K +
Sbjct: 170 ---------NAGLDG---------AMSLFLAMEERDVVTWNSMIGGLVRCGELQGACKLF 211

Query: 174 KVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKC 233
             +                                          ++V  ++++D YAK 
Sbjct: 212 DEMPD---------------------------------------RDMVSWNTMLDGYAKA 232

Query: 234 GELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYT 293
           GE+  A  LF+    R++++W+TMV GY+K GDM+ A  LF+  P KN V WTT+IAGY 
Sbjct: 233 GEMDTAFELFERMPWRNIVSWSTMVCGYSKGGDMDMARMLFDRCPVKNVVLWTTIIAGYA 292

Query: 294 RNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTI 353
             GL ++A EL+ +M    +RP+     S L ACA    L  GK++H  + R  FR    
Sbjct: 293 EKGLAREATELYGKMEEAGMRPDDGFLLSILAACAESGMLGLGKRIHASMRRWRFRCGAK 352

Query: 354 VMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRS 413
           V+++ IDMY+KCGCL+    VF     K++ + WN+MI     HG+ E+A+ LF  MV+ 
Sbjct: 353 VLNAFIDMYAKCGCLDAAFDVFSGMMAKKDVVSWNSMIQGFAMHGHGEKALELFSWMVQE 412

Query: 414 SVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQ 473
             +PD  T   +L ACTH+GLV EG  YF SM    GI+P  EH+ C+++LL + G   +
Sbjct: 413 GFEPDTYTFVGLLCACTHAGLVNEGRKYFYSMEKVYGIVPQVEHYGCMMDLLGRGGHLKE 472

Query: 474 LMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSA 533
               L  MP E ++ +   L   CR+H ++D+ R V +QL    P     + LLS+IY+ 
Sbjct: 473 AFMLLRSMPMEPNAIILGTLLNACRMHNDVDLARAVCEQLFKLEPSDPGNYSLLSNIYAQ 532

Query: 534 LGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQL 590
            G    V  VR  +     +K    S IE+E +VH F+V D  HP  D +Y ++++L
Sbjct: 533 AGDWMNVANVRLQMKNTGGEKPSGASSIEVEEEVHEFTVFDQSHPKSDDIYQMIDRL 589



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 48/154 (31%), Positives = 73/154 (47%), Gaps = 6/154 (3%)

Query: 30  KGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTF 89
           KG   EA      + + G+R     L  IL  CAES  L LGKR+H  ++  + +     
Sbjct: 294 KGLAREATELYGKMEEAGMRPDDGFLLSILAACAESGMLGLGKRIHASMRRWRFRCGAKV 353

Query: 90  LSNHLISMYFKCGSDVDARKVFDKIPV-KNLFSYNNMLSGYANLGMMKHARNLFDNMA-- 146
           L N  I MY KCG    A  VF  +   K++ S+N+M+ G+A  G  + A  LF  M   
Sbjct: 354 L-NAFIDMYAKCGCLDAAFDVFSGMMAKKDVVSWNSMIQGFAMHGHGEKALELFSWMVQE 412

Query: 147 --ERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRR 178
             E D  ++  ++     +G V EG K++  + +
Sbjct: 413 GFEPDTYTFVGLLCACTHAGLVNEGRKYFYSMEK 446



 Score = 41.6 bits (96), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 48/201 (23%), Positives = 84/201 (41%), Gaps = 14/201 (6%)

Query: 324 LCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKEN 383
           LC      +L    Q+H  +++ N   +  V   LI  +S C  L     VF+   +  N
Sbjct: 25  LCDLHKCTNLDSVNQIHAQVLKANLHQDLFVAPKLIAAFSLCRHLASAVNVFNHVPHP-N 83

Query: 384 SMLWNTMISALTQH-GYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSG---LVQEGL 439
             L+N++I A   +  +       F  M ++ + PD  T   +L AC+      LV+   
Sbjct: 84  VHLYNSIIRAHAHNSSHRSLPFNAFFQMQKNGLFPDNFTYPFLLKACSGPSSLPLVRMIH 143

Query: 440 TYFESMTHDLGI-IPNQEHHACLIELLAQAGCS--DQLMNQLEKMPYEHDSYLWNALHGV 496
            + E +     I +PN      LI+  ++ G +  D  M+    M  E D   WN++ G 
Sbjct: 144 AHVEKIGFYGDIFVPNS-----LIDSYSRCGNAGLDGAMSLFLAME-ERDVVTWNSMIGG 197

Query: 497 CRIHGNIDMGRKVVDQLIDQN 517
               G +    K+ D++ D++
Sbjct: 198 LVRCGELQGACKLFDEMPDRD 218


>gi|359486639|ref|XP_002284011.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g39620-like [Vitis vinifera]
          Length = 1005

 Score =  311 bits (797), Expect = 7e-82,   Method: Compositional matrix adjust.
 Identities = 181/570 (31%), Positives = 293/570 (51%), Gaps = 65/570 (11%)

Query: 26  SLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKT 85
           +L+  G   EA+S    +  + ++    TL  IL  CA+   LKLGK +H          
Sbjct: 404 ALVQTGYPEEALSLFQEMQNQKMKPNRVTLMSILPACADLSLLKLGKSIHC--------- 454

Query: 86  PTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNM 145
                        F   +D+D+          +L +   ++S YA  G    A   F+ M
Sbjct: 455 -------------FTVKADMDS----------DLSTGTALVSMYAKCGFFTAALTTFNRM 491

Query: 146 AERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTR 205
           + RD+V+WN++I GYA+ G     +  +  LR  +I+ +  +  G++  C  L +L    
Sbjct: 492 SSRDIVTWNSLINGYAQIGDPYNAIDMFYKLRLSAINPDAGTMVGVVPACALLNDLDQGT 551

Query: 206 QVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLG 265
            +HG ++  GF S+  + ++++D YAKCG                               
Sbjct: 552 CIHGLIVKLGFESDCHVKNALIDMYAKCGS------------------------------ 581

Query: 266 DMESASKLFNEMP-EKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCL 324
            + SA  LFN+    K+ V+W  +IA Y +NG  ++A+  F +M +    PN  TF S L
Sbjct: 582 -LPSAEFLFNKTDFTKDEVTWNVIIAAYMQNGHAKEAISSFHQMRLENFHPNSVTFVSVL 640

Query: 325 CACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENS 384
            A A + + + G   H  +I+  F SNT+V +SLIDMY+KCG L+   ++F+  D+K+ +
Sbjct: 641 PAAAYLAAFREGMAFHACIIQMGFLSNTLVGNSLIDMYAKCGQLDYSEKLFNEMDHKD-T 699

Query: 385 MLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFES 444
           + WN M+S    HG+ ++AI LF  M  S V+ D ++   +L+AC H+GLV+EG   F S
Sbjct: 700 VSWNAMLSGYAVHGHGDRAIALFSLMQESQVQIDSVSFVSVLSACRHAGLVEEGRKIFHS 759

Query: 445 MTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNID 504
           M+    I P+ EH+AC+++LL +AG  D+ +  ++ MP E D+ +W AL G CR+H N+ 
Sbjct: 760 MSDKYHIKPDLEHYACMVDLLGRAGLFDETLGFIKVMPVEPDAGVWGALLGSCRMHSNVK 819

Query: 505 MGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIE 564
           +G   +D L+   P++ A   +LSSIY+  G+     K R  +N+   KK    SW+E++
Sbjct: 820 LGEVALDHLVKLEPRNPAHFVVLSSIYAQSGRWADAGKARSKMNDLGLKKTPGCSWVELK 879

Query: 565 NKVHAFSVSDSLHPMRDVLYSVLEQLAGQM 594
           NKVHAF V D  HP  + ++ +   L  +M
Sbjct: 880 NKVHAFRVGDKSHPQLESMHLLWNTLLEKM 909



 Score =  186 bits (473), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 135/524 (25%), Positives = 242/524 (46%), Gaps = 85/524 (16%)

Query: 16  PNNCLIQSFLSLISKG-QLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRV 74
           P+  L  S +   ++  Q +EA+     + ++G+     T  F+L+ C  + +L+ G   
Sbjct: 92  PSRILWNSMIRAYTRSKQYNEALEMYYCMVEKGLEPDKYTFTFVLKACTGALNLQEGVWF 151

Query: 75  HLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGM 134
           H                            ++D R +      +++F    ++  Y+ +G 
Sbjct: 152 H---------------------------GEIDRRGL-----ERDVFIGAGLVDMYSKMGD 179

Query: 135 MKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTI 194
           +K AR +FD M +RDVV+WN MI G ++S    E + F++ ++   +  +  S   +   
Sbjct: 180 LKRAREVFDKMPKRDVVAWNAMIAGLSQSEDPCEAVDFFRSMQLVGVEPSSVSLLNLFPG 239

Query: 195 CVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTW 254
             KL  ++L R +HG V    F S   +S+ ++D Y+KCG                    
Sbjct: 240 ICKLSNIELCRSIHGYVFRRDFSS--AVSNGLIDLYSKCG-------------------- 277

Query: 255 TTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIR 314
                      D++ A ++F++M +++ VSW T++AGY  NG   + LELF +M +  +R
Sbjct: 278 -----------DVDVARRVFDQMVDQDDVSWGTMMAGYAHNGCFVEVLELFDKMKLGNVR 326

Query: 315 PNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQV 374
            N+ +  S   A A  + L+ GK++HG  ++    S+ +V + L+ MY+KCG     +Q+
Sbjct: 327 INKVSAVSAFLAAAETIDLEKGKEIHGCALQQRIDSDILVATPLMVMYAKCGETEKAKQL 386

Query: 375 FDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGL 434
           F     ++  + W+ +I+AL Q GY E+A+ LF +M    +KP+++TL  IL AC    L
Sbjct: 387 FWGLQGRD-LVAWSAIIAALVQTGYPEEALSLFQEMQNQKMKPNRVTLMSILPACADLSL 445

Query: 435 VQEG-----LTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYL 489
           ++ G      T    M  DL           L+ + A+ G     +    +M    D   
Sbjct: 446 LKLGKSIHCFTVKADMDSDLST------GTALVSMYAKCGFFTAALTTFNRMS-SRDIVT 498

Query: 490 WNAL-HGVCRI---HGNIDMGRKVVDQLIDQNPQSSATHGLLSS 529
           WN+L +G  +I   +  IDM  K+  +L   NP +    G++ +
Sbjct: 499 WNSLINGYAQIGDPYNAIDMFYKL--RLSAINPDAGTMVGVVPA 540



 Score =  177 bits (450), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 132/521 (25%), Positives = 226/521 (43%), Gaps = 73/521 (14%)

Query: 31  GQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFL 90
           G   E +   D +    +R+   +        AE+  L+ GK +H    L QR      +
Sbjct: 308 GCFVEVLELFDKMKLGNVRINKVSAVSAFLAAAETIDLEKGKEIH-GCALQQRIDSDILV 366

Query: 91  SNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDV 150
           +  L+ MY KCG                                 + A+ LF  +  RD+
Sbjct: 367 ATPLMVMYAKCGE-------------------------------TEKAKQLFWGLQGRDL 395

Query: 151 VSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQ 210
           V+W+ +I    ++G  EE L  ++ ++   +  N  +   IL  C  L  LKL + +H  
Sbjct: 396 VAWSAIIAALVQTGYPEEALSLFQEMQNQKMKPNRVTLMSILPACADLSLLKLGKSIHCF 455

Query: 211 VLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESA 270
            +     S                               D+ T T +VS YAK G   +A
Sbjct: 456 TVKADMDS-------------------------------DLSTGTALVSMYAKCGFFTAA 484

Query: 271 SKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASI 330
              FN M  ++ V+W +LI GY + G    A+++F ++ +  I P+  T    + ACA +
Sbjct: 485 LTTFNRMSSRDIVTWNSLINGYAQIGDPYNAIDMFYKLRLSAINPDAGTMVGVVPACALL 544

Query: 331 VSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTM 390
             L  G  +HG +++  F S+  V ++LIDMY+KCG L     +F+ TD  ++ + WN +
Sbjct: 545 NDLDQGTCIHGLIVKLGFESDCHVKNALIDMYAKCGSLPSAEFLFNKTDFTKDEVTWNVI 604

Query: 391 ISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLG 450
           I+A  Q+G+ ++AI  FH M   +  P+ +T   +L A  +    +EG+  F +    +G
Sbjct: 605 IAAYMQNGHAKEAISSFHQMRLENFHPNSVTFVSVLPAAAYLAAFREGMA-FHACIIQMG 663

Query: 451 IIPNQEHHACLIELLAQAG---CSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGR 507
            + N      LI++ A+ G    S++L N+++      D+  WNA+     +HG+ D  R
Sbjct: 664 FLSNTLVGNSLIDMYAKCGQLDYSEKLFNEMD----HKDTVSWNAMLSGYAVHGHGD--R 717

Query: 508 KVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLIN 548
            +    + Q  Q         S+ SA     LVE+ R++ +
Sbjct: 718 AIALFSLMQESQVQIDSVSFVSVLSACRHAGLVEEGRKIFH 758



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 76/307 (24%), Positives = 148/307 (48%), Gaps = 40/307 (13%)

Query: 120 FSYNNMLSGYANLGMMKH----ARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKV 175
           F +++ ++   NL  + H    AR++FD+      + WN+MI  Y +S    E L+ Y  
Sbjct: 60  FKHHHSITHLINLYSLFHKCDLARSVFDSTPNPSRILWNSMIRAYTRSKQYNEALEMYYC 119

Query: 176 LRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGE 235
           +    +  ++++F  +L  C     L+     HG++   G   +V I + +VD Y+K G+
Sbjct: 120 MVEKGLEPDKYTFTFVLKACTGALNLQEGVWFHGEIDRRGLERDVFIGAGLVDMYSKMGD 179

Query: 236 LSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRN 295
           L  AR +FD+   RDV+ W  M++G ++                ++P             
Sbjct: 180 LKRAREVFDKMPKRDVVAWNAMIAGLSQ---------------SEDPC------------ 212

Query: 296 GLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVM 355
               +A++ F  M ++ + P+  +  +       + +++  + +HG++ R +F S   V 
Sbjct: 213 ----EAVDFFRSMQLVGVEPSSVSLLNLFPGICKLSNIELCRSIHGYVFRRDFSS--AVS 266

Query: 356 SSLIDMYSKCGCLNDGRQVFD-LTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSS 414
           + LID+YSKCG ++  R+VFD + D  + S  W TM++    +G   + + LF  M   +
Sbjct: 267 NGLIDLYSKCGDVDVARRVFDQMVDQDDVS--WGTMMAGYAHNGCFVEVLELFDKMKLGN 324

Query: 415 VKPDKIT 421
           V+ +K++
Sbjct: 325 VRINKVS 331



 Score = 99.0 bits (245), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 83/344 (24%), Positives = 145/344 (42%), Gaps = 71/344 (20%)

Query: 180 SISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDA 239
           S   N   +  +L+ C  L  L    Q+H Q++V+GF  +  I+  +++ Y+   +   A
Sbjct: 27  STYTNYLHYPRLLSSCKHLNPL---LQIHAQIIVSGFKHHHSITH-LINLYSLFHKCDLA 82

Query: 240 RRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQ 299
           R +FD T                               P  + + W ++I  YTR+    
Sbjct: 83  RSVFDST-------------------------------PNPSRILWNSMIRAYTRSKQYN 111

Query: 300 KALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLI 359
           +ALE++  M+   + P+++TF+  L AC   ++L+ G   HG + R     +  + + L+
Sbjct: 112 EALEMYYCMVEKGLEPDKYTFTFVLKACTGALNLQEGVWFHGEIDRRGLERDVFIGAGLV 171

Query: 360 DMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDK 419
           DMYSK G L   R+VFD    K + + WN MI+ L+Q     +A+  F  M    V+P  
Sbjct: 172 DMYSKMGDLKRAREVFDKMP-KRDVVAWNAMIAGLSQSEDPCEAVDFFRSMQLVGVEPSS 230

Query: 420 ITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLE 479
           ++L                L  F  +     I   +  H  +      +  S+ L++   
Sbjct: 231 VSL----------------LNLFPGICKLSNIELCRSIHGYVFRRDFSSAVSNGLID--- 271

Query: 480 KMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSAT 523
                        L+  C   G++D+ R+V DQ++DQ+  S  T
Sbjct: 272 -------------LYSKC---GDVDVARRVFDQMVDQDDVSWGT 299



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 62/288 (21%), Positives = 118/288 (40%), Gaps = 36/288 (12%)

Query: 116 VKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKV 175
           + N    N+++  YA  G + ++  LF+ M  +D VSWN M+ GYA  G  +  +  + +
Sbjct: 665 LSNTLVGNSLIDMYAKCGQLDYSEKLFNEMDHKDTVSWNAMLSGYAVHGHGDRAIALFSL 724

Query: 176 LRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGE 235
           ++   +  +  SF  +L+ C     ++  R++         +S+       ++ YA   +
Sbjct: 725 MQESQVQIDSVSFVSVLSACRHAGLVEEGRKIFHS------MSDKYHIKPDLEHYACMVD 778

Query: 236 LSDARRLFDETDA--------RDVLTWTTMVSGY-----AKLGDMESASKLFNEMPEKNP 282
           L     LFDET           D   W  ++         KLG  E A     ++  +NP
Sbjct: 779 LLGRAGLFDETLGFIKVMPVEPDAGVWGALLGSCRMHSNVKLG--EVALDHLVKLEPRNP 836

Query: 283 VSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGF 342
             +  L + Y ++G    A +  ++M  L ++            C S V LK+  +VH F
Sbjct: 837 AHFVVLSSIYAQSGRWADAGKARSKMNDLGLKKTP--------GC-SWVELKN--KVHAF 885

Query: 343 LI----RTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSML 386
            +         S  ++ ++L++   K G + D   V    + ++  M 
Sbjct: 886 RVGDKSHPQLESMHLLWNTLLEKMEKIGYVPDRSCVLQNVEEEDKEMF 933


>gi|449523934|ref|XP_004168978.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62260,
           mitochondrial-like [Cucumis sativus]
          Length = 664

 Score =  311 bits (797), Expect = 7e-82,   Method: Compositional matrix adjust.
 Identities = 171/540 (31%), Positives = 285/540 (52%), Gaps = 70/540 (12%)

Query: 92  NHLISMYFKCGSDV--DARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERD 149
           N ++S Y  CG      AR +FD++P  +  S+N MLSGYA  G M  A  LF+ M ER+
Sbjct: 123 NLMLSGYISCGGKFVERARNMFDQMPETDCVSWNTMLSGYAKSGTMDKAEELFNEMPERN 182

Query: 150 VVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHG 209
           VVSWN M+ GY  +G VE+ ++F+K++ +   +      +G++     +E  ++  Q  G
Sbjct: 183 VVSWNAMVSGYLMNGHVEKAIEFFKLMPKRDSASLRALVSGLIQNDKLVEAERILLQYGG 242

Query: 210 QV-----------LVTGF-------------------------LSNVVISSSIVDAYAKC 233
            V           L+ G+                           NV+  +S++  Y + 
Sbjct: 243 NVGKGDLVDAYNTLIAGYGQKGMAYEARKLFDRIPLCCDCGYSRRNVISWNSMIMCYVRA 302

Query: 234 GELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPE-------------- 279
           G++  AR LFD+   RD  +W TM+SGY ++ DM+ AS LF+ MPE              
Sbjct: 303 GDIVSARELFDKMVERDTFSWNTMISGYVQILDMKEASNLFSRMPEPDTLSWNMMISGFS 362

Query: 280 -----------------KNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSS 322
                            K+ VSW ++I+GY +N   + A+ +F +M +   +P++HT SS
Sbjct: 363 EIGSLKLAHDLFKRIPEKSLVSWNSMISGYEKNEDYKGAMNIFLQMQLEGKKPDRHTLSS 422

Query: 323 CLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKE 382
            L ACA +V L  G Q+H  L+   F ++  + +SL+ MYS+CG + + R VFD  + + 
Sbjct: 423 ILSACAGLVDLVLGTQIHQ-LVTKAFIADLPINNSLVTMYSRCGAIVEARMVFDEMNLQR 481

Query: 383 NSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYF 442
           + + WN MI     HG+  +A++LF  M + +V+P  IT   +LNAC H+GL++EG   F
Sbjct: 482 DVISWNAMIGGYAYHGFATEALQLFDLMKQCNVQPSYITFISVLNACAHAGLIEEGRREF 541

Query: 443 ESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGN 502
            SM +  GI P  EH+A L++++ + G  ++ M+ +  MP E D  +W AL G C++H N
Sbjct: 542 NSMVNTHGIKPQVEHYAALVDIIGRHGQLEEAMSLINSMPCEPDKAVWGALLGACKVHNN 601

Query: 503 IDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIE 562
           ++M R   + L+   P+SSA + LL ++Y+ +G+     ++R ++ +   +K+   S ++
Sbjct: 602 VEMARAAAEALMKLQPESSAPYVLLHNMYADVGRWDDAAEMRTMMEKNNVQKDAGYSRVD 661



 Score =  134 bits (337), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 85/327 (25%), Positives = 162/327 (49%), Gaps = 37/327 (11%)

Query: 79  KLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHA 138
           K+ +R T   F  N +IS Y +     +A  +F ++P  +  S+N M+SG++ +G +K A
Sbjct: 314 KMVERDT---FSWNTMISGYVQILDMKEASNLFSRMPEPDTLSWNMMISGFSEIGSLKLA 370

Query: 139 RNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKL 198
            +LF  + E+ +VSWN+MI GY K+   +  +  +  ++      +  + + IL+ C  L
Sbjct: 371 HDLFKRIPEKSLVSWNSMISGYEKNEDYKGAMNIFLQMQLEGKKPDRHTLSSILSACAGL 430

Query: 199 EELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETD-ARDVLTWTTM 257
            +L L  Q+H Q++   F++++ I++S+V  Y++CG + +AR +FDE +  RDV++W  M
Sbjct: 431 VDLVLGTQIH-QLVTKAFIADLPINNSLVTMYSRCGAIVEARMVFDEMNLQRDVISWNAM 489

Query: 258 VSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQ 317
           + GYA                                +G   +AL+LF  M    ++P+ 
Sbjct: 490 IGGYA-------------------------------YHGFATEALQLFDLMKQCNVQPSY 518

Query: 318 HTFSSCLCACASIVSLKHGKQVHGFLIRTN-FRSNTIVMSSLIDMYSKCGCLNDGRQVFD 376
            TF S L ACA    ++ G++    ++ T+  +      ++L+D+  + G L +   + +
Sbjct: 519 ITFISVLNACAHAGLIEEGRREFNSMVNTHGIKPQVEHYAALVDIIGRHGQLEEAMSLIN 578

Query: 377 LTDNKENSMLWNTMISALTQHGYDEQA 403
               + +  +W  ++ A   H   E A
Sbjct: 579 SMPCEPDKAVWGALLGACKVHNNVEMA 605



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 129/536 (24%), Positives = 206/536 (38%), Gaps = 150/536 (27%)

Query: 116 VKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKV 175
           V   +S N  +S     G +  AR LFD+    + ++WN MI  Y K             
Sbjct: 54  VPEFYSLNKKISYLIRTGRINEARELFDSTEHWNTITWNRMITAYVK------------- 100

Query: 176 LRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGE 235
            RR  +   +             EE+     V   ++++G++S              CG 
Sbjct: 101 -RREMLKARQL-----------FEEMPNRDIVSWNLMLSGYIS--------------CGG 134

Query: 236 --LSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYT 293
             +  AR +FD+    D ++W TM+SGYAK G M+ A +LFNEMPE+N VSW  +++GY 
Sbjct: 135 KFVERARNMFDQMPETDCVSWNTMLSGYAKSGTMDKAEELFNEMPERNVVSWNAMVSGYL 194

Query: 294 RNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLK------------------- 334
            NG  +KA+E F ++M  R   +     S L     +V  +                   
Sbjct: 195 MNGHVEKAIEFF-KLMPKRDSASLRALVSGLIQNDKLVEAERILLQYGGNVGKGDLVDAY 253

Query: 335 ------HGKQVHGFLIRTNF------------RSNTIVMSSLIDMYSKCGCLNDGRQVFD 376
                 +G++   +  R  F            R N I  +S+I  Y + G +   R++FD
Sbjct: 254 NTLIAGYGQKGMAYEARKLFDRIPLCCDCGYSRRNVISWNSMIMCYVRAGDIVSARELFD 313

Query: 377 -------------------LTDNKENSML-----------WNTMISALTQ---------- 396
                              + D KE S L           WN MIS  ++          
Sbjct: 314 KMVERDTFSWNTMISGYVQILDMKEASNLFSRMPEPDTLSWNMMISGFSEIGSLKLAHDL 373

Query: 397 ----------------HGYDEQ-----AIRLFHDMVRSSVKPDKITLAVILNACTHSGLV 435
                            GY++      A+ +F  M     KPD+ TL+ IL+AC  +GLV
Sbjct: 374 FKRIPEKSLVSWNSMISGYEKNEDYKGAMNIFLQMQLEGKKPDRHTLSSILSAC--AGLV 431

Query: 436 QEGLTYFESMTHDL---GIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNA 492
              L    +  H L     I +   +  L+ + ++ G   +     ++M  + D   WNA
Sbjct: 432 DLVLG---TQIHQLVTKAFIADLPINNSLVTMYSRCGAIVEARMVFDEMNLQRDVISWNA 488

Query: 493 LHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLIN 548
           + G    HG      ++ D +   N Q S  +    S+ +A     L+E+ R+  N
Sbjct: 489 MIGGYAYHGFATEALQLFDLMKQCNVQPS--YITFISVLNACAHAGLIEEGRREFN 542



 Score = 66.6 bits (161), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 51/168 (30%), Positives = 93/168 (55%), Gaps = 12/168 (7%)

Query: 13  KNLPNNCLIQSFLSLISKGQLSEAI-SSLDLLAQ---RGIRLPAETLAFILQQCAESKSL 68
           K +P   L+ S+ S+IS  + +E    ++++  Q    G +    TL+ IL  CA    L
Sbjct: 375 KRIPEKSLV-SWNSMISGYEKNEDYKGAMNIFLQMQLEGKKPDRHTLSSILSACAGLVDL 433

Query: 69  KLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPV-KNLFSYNNMLS 127
            LG ++H    +T+       ++N L++MY +CG+ V+AR VFD++ + +++ S+N M+ 
Sbjct: 434 VLGTQIHQ--LVTKAFIADLPINNSLVTMYSRCGAIVEARMVFDEMNLQRDVISWNAMIG 491

Query: 128 GYANLGMMKHARNLFDNMAERDV----VSWNTMIIGYAKSGAVEEGLK 171
           GYA  G    A  LFD M + +V    +++ +++   A +G +EEG +
Sbjct: 492 GYAYHGFATEALQLFDLMKQCNVQPSYITFISVLNACAHAGLIEEGRR 539


>gi|222626043|gb|EEE60175.1| hypothetical protein OsJ_13106 [Oryza sativa Japonica Group]
          Length = 628

 Score =  311 bits (797), Expect = 7e-82,   Method: Compositional matrix adjust.
 Identities = 172/581 (29%), Positives = 293/581 (50%), Gaps = 42/581 (7%)

Query: 24  FLSLISKGQLSEAISSLDLLAQRGIRL--PAETLAFILQQCAESKSLKLGKRVHLHLKLT 81
           F+ L + G+L +A+        RG+     A   + + + C   ++L+  +++H     T
Sbjct: 18  FVRLCATGRLRDALRR----PFRGVLWSDAARLFSHLFRAC---RALRPLRQLHA-FAAT 69

Query: 82  QRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNL 141
                  F +NHL+  Y   G    AR++F++IP +N+ S+N +  GY   G +  AR L
Sbjct: 70  SGAATDRFTANHLMLAYADLGDLTAARELFERIPRRNVMSWNILFGGYIKNGDLGGARKL 129

Query: 142 FDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEEL 201
           FD M ER+V +WN M+ G    G  EE L F+  +RR  +  +EF    +   C  L ++
Sbjct: 130 FDEMPERNVATWNAMVAGLTNLGFDEESLGFFLDMRREGMHPDEFGLGSVFRCCAGLRDV 189

Query: 202 KLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGY 261
              RQVH  V+ +G   ++ + SS+   Y +CG L                         
Sbjct: 190 VTGRQVHAYVVRSGLDRDMCVGSSLAHMYMRCGCL------------------------- 224

Query: 262 AKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFS 321
                 +    +   +P  + VS  T+IAG T+NG  + ALE F  M  + +  +  TF 
Sbjct: 225 ------QEGEAVLRMLPSLSIVSCNTIIAGRTQNGDSEGALEYFCMMRSVGVAADVVTFV 278

Query: 322 SCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNK 381
           S + +C+ + +L  G+Q+HG +++        VM+ L+ MYS+CGCL D  +VF      
Sbjct: 279 SAISSCSDLAALAQGQQIHGQVMKAGVDKVVPVMTCLVHMYSRCGCLGDSERVF-FGYCG 337

Query: 382 ENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTY 441
            ++ L + MISA   HG+ ++AI LF  M+    +P  +T   +L AC+HSGL +EG+  
Sbjct: 338 SDTFLLSAMISAYGFHGHGQKAIELFKQMMNGGAEPSDVTFLALLYACSHSGLKEEGMDC 397

Query: 442 FESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHG 501
           FE MT   G+ P+ +H+ C+++LL ++GC D+    +  MP   D  +W  L   C+   
Sbjct: 398 FELMTKTYGMQPSVKHYTCVVDLLGRSGCLDEAEALILSMPLTPDGVIWKTLLSACKTQK 457

Query: 502 NIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWI 561
           N DM  ++  ++I+ +P  SA++ LLS+I +   +   V +VR+ + +   +KE  +SW+
Sbjct: 458 NFDMAERIAKRVIELDPHDSASYVLLSNIRATSRRWGDVSEVRKAMRDNNVRKEPGVSWV 517

Query: 562 EIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQMGEDAPSLD 602
           E++  +H F   D  HP +  +   LE++  ++ +   S D
Sbjct: 518 ELKGHIHQFCTGDESHPRQKEIDECLEEMMAKIRQCGYSPD 558



 Score = 44.7 bits (104), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 36/173 (20%), Positives = 80/173 (46%), Gaps = 8/173 (4%)

Query: 13  KNLPNNCLIQSFLSLISKGQLSEAISSLDLLAQ-RGIRLPAETLAFI--LQQCAESKSLK 69
           + LP+  ++     +  + Q  ++  +L+     R + + A+ + F+  +  C++  +L 
Sbjct: 232 RMLPSLSIVSCNTIIAGRTQNGDSEGALEYFCMMRSVGVAADVVTFVSAISSCSDLAALA 291

Query: 70  LGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGY 129
            G+++H  +           ++  L+ MY +CG   D+ +VF      + F  + M+S Y
Sbjct: 292 QGQQIHGQVMKAGVDKVVPVMTC-LVHMYSRCGCLGDSERVFFGYCGSDTFLLSAMISAY 350

Query: 130 ANLGMMKHARNLFDNM----AERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRR 178
              G  + A  LF  M    AE   V++  ++   + SG  EEG+  ++++ +
Sbjct: 351 GFHGHGQKAIELFKQMMNGGAEPSDVTFLALLYACSHSGLKEEGMDCFELMTK 403


>gi|356540333|ref|XP_003538644.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g14820-like [Glycine max]
          Length = 721

 Score =  311 bits (797), Expect = 7e-82,   Method: Compositional matrix adjust.
 Identities = 180/580 (31%), Positives = 296/580 (51%), Gaps = 33/580 (5%)

Query: 16  PNNCLIQSFLSLISKGQLSEAISSLDL-LAQRGIRLPAETLAFILQQCAESKSLKLGKRV 74
           P        L   S+G   E   SL L L + G  L   +   +L+  ++  +L LG  +
Sbjct: 78  PPTRFSNQLLRQFSRGPTPENTLSLYLHLRRNGFPLDRFSFPPLLKAVSKLSALNLGLEI 137

Query: 75  HLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGM 134
           H             F+ + LI+MY  CG  +DA                           
Sbjct: 138 HGLASKFGFFHADPFIQSALIAMYAACGRIMDA--------------------------- 170

Query: 135 MKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTI 194
               R LFD M+ RDVV+WN MI GY+++   +  LK Y+ ++      +      +L+ 
Sbjct: 171 ----RFLFDKMSHRDVVTWNIMIDGYSQNAHYDHVLKLYEEMKTSGTEPDAIILCTVLSA 226

Query: 195 CVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTW 254
           C     L   + +H  +   GF     I +S+V+ YA CG +  AR ++D+  ++ ++  
Sbjct: 227 CAHAGNLSYGKAIHQFIKDNGFRVGSHIQTSLVNMYANCGAMHLAREVYDQLPSKHMVVS 286

Query: 255 TTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIR 314
           T M+SGYAKLG ++ A  +F+ M EK+ V W+ +I+GY  +    +AL+LF  M   RI 
Sbjct: 287 TAMLSGYAKLGMVQDARFIFDRMVEKDLVCWSAMISGYAESYQPLEALQLFNEMQRRRIV 346

Query: 315 PNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQV 374
           P+Q T  S + ACA++ +L   K +H +  +  F     + ++LIDMY+KCG L   R+V
Sbjct: 347 PDQITMLSVISACANVGALVQAKWIHTYADKNGFGRTLPINNALIDMYAKCGNLVKAREV 406

Query: 375 FDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGL 434
           F+    K N + W++MI+A   HG  + AI LFH M   +++P+ +T   +L AC+H+GL
Sbjct: 407 FENMPRK-NVISWSSMINAFAMHGDADSAIALFHRMKEQNIEPNGVTFIGVLYACSHAGL 465

Query: 435 VQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALH 494
           V+EG  +F SM ++  I P +EH+ C+++L  +A    + M  +E MP+  +  +W +L 
Sbjct: 466 VEEGQKFFSSMINEHRISPQREHYGCMVDLYCRANHLRKAMELIETMPFPPNVIIWGSLM 525

Query: 495 GVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKK 554
             C+ HG I++G     +L++  P       +LS+IY+   +   V  VR+L+  +   K
Sbjct: 526 SACQNHGEIELGEFAATRLLELEPDHDGALVVLSNIYAKEKRWDDVGLVRKLMKHKGVSK 585

Query: 555 EQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQM 594
           E+A S IE+ N+VH F ++D  H   D +Y  L+ +  Q+
Sbjct: 586 EKACSRIEVNNEVHVFMMADRYHKQSDEIYKKLDAVVSQL 625



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 112/459 (24%), Positives = 202/459 (44%), Gaps = 74/459 (16%)

Query: 135 MKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTI 194
           + +A +LF ++        N ++  +++    E  L  Y  LRR     + FSF  +L  
Sbjct: 65  LDYALSLFSHIPNPPTRFSNQLLRQFSRGPTPENTLSLYLHLRRNGFPLDRFSFPPLLKA 124

Query: 195 CVKLEELKLTRQVHGQVLVTGFL-SNVVISSSIVDAYAKCGELSDARRLFDETDARDVLT 253
             KL  L L  ++HG     GF  ++  I S+++  YA CG + DAR LFD+   RDV+T
Sbjct: 125 VSKLSALNLGLEIHGLASKFGFFHADPFIQSALIAMYAACGRIMDARFLFDKMSHRDVVT 184

Query: 254 WTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRI 313
           W  M+ GY++    +   KL+ EM                                    
Sbjct: 185 WNIMIDGYSQNAHYDHVLKLYEEMKTSG-------------------------------T 213

Query: 314 RPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQ 373
            P+     + L ACA   +L +GK +H F+    FR  + + +SL++MY+ CG ++  R+
Sbjct: 214 EPDAIILCTVLSACAHAGNLSYGKAIHQFIKDNGFRVGSHIQTSLVNMYANCGAMHLARE 273

Query: 374 VFDLTDNKE----NSML--------------------------WNTMISALTQHGYDEQA 403
           V+D   +K      +ML                          W+ MIS   +     +A
Sbjct: 274 VYDQLPSKHMVVSTAMLSGYAKLGMVQDARFIFDRMVEKDLVCWSAMISGYAESYQPLEA 333

Query: 404 IRLFHDMVRSSVKPDKITLAVILNACTHSG-LVQEGLTYFESMTHDLG-IIPNQEHHACL 461
           ++LF++M R  + PD+IT+  +++AC + G LVQ    +  +  +  G  +P       L
Sbjct: 334 LQLFNEMQRRRIVPDQITMLSVISACANVGALVQAKWIHTYADKNGFGRTLPINN---AL 390

Query: 462 IELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSS 521
           I++ A+ G   +     E MP + +   W+++     +HG+ D    +  ++ +QN + +
Sbjct: 391 IDMYAKCGNLVKAREVFENMPRK-NVISWSSMINAFAMHGDADSAIALFHRMKEQNIEPN 449

Query: 522 ATHGLLSSIYSALGKGRLVEKVRQ----LINERQFKKEQ 556
                +  +Y+    G LVE+ ++    +INE +   ++
Sbjct: 450 GV-TFIGVLYACSHAG-LVEEGQKFFSSMINEHRISPQR 486


>gi|147774372|emb|CAN72397.1| hypothetical protein VITISV_041201 [Vitis vinifera]
          Length = 576

 Score =  311 bits (797), Expect = 7e-82,   Method: Compositional matrix adjust.
 Identities = 160/504 (31%), Positives = 282/504 (55%), Gaps = 5/504 (0%)

Query: 91  SNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGY----ANLGMMKHARNLFDNMA 146
           S HL+S+  +C +     +    +  + L   N +LS +    ++LG   ++ ++F +  
Sbjct: 41  SYHLLSLLKQCSNLKHLHQTHCFMLSRGLDQDNILLSRFIEACSSLGFSHYSHSIFTHKT 100

Query: 147 ERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQ 206
             D+  +NT+I   +      E +  Y  +    +  + +S   +L   V+L  + + RQ
Sbjct: 101 RPDIYLYNTIIKALSNPELATEAILLYNRILASDLRFDTYSLPFVLKAVVRLLAIHVGRQ 160

Query: 207 VHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGD 266
           +H Q + TG +S++ + ++++  Y+ CG +S+AR+LFD    RDV  W  MV+GYAK+GD
Sbjct: 161 IHCQAIGTGLVSDIHVVTALIQMYSSCGCVSEARQLFDGVCFRDVAFWNAMVAGYAKVGD 220

Query: 267 MESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCA 326
           +++A  LF  MPE+N +SWT +IAGY +     +A+ +F RM +  + P++    + L A
Sbjct: 221 VDNARHLFERMPERNVISWTAVIAGYAQMDRPNEAITMFRRMQLEEVEPDEIAMLAALSA 280

Query: 327 CASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSML 386
           CA + +L+ G+ +H ++ +        + ++LIDMY+KCG +    +VF   ++K + + 
Sbjct: 281 CAHLGALELGEWIHNYIDKHGLSKIVPLNNALIDMYAKCGKIEKALEVFKNMEHK-SVIT 339

Query: 387 WNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMT 446
           W +MI  L  HG   +A+ +F  M R+ +KP++IT   IL+AC H GLV+ G  YF+ M 
Sbjct: 340 WTSMIDGLALHGLGREALEMFSCMERNRIKPNEITFVAILSACCHVGLVEMGRWYFKCMG 399

Query: 447 HDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMG 506
              GI P  +H+ C+I+LL +AG   +    +  MP+E ++ +W +L    RIHG+ ++G
Sbjct: 400 TKYGIKPKIQHYGCMIDLLGRAGFLQEAQELVRGMPFEANAPIWGSLLAAARIHGDAELG 459

Query: 507 RKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENK 566
           ++ +  LI   P +S  + LLS+IY+   K      VR+++ +   KK    S IE+ N+
Sbjct: 460 KQALQHLIKVEPHNSGNYTLLSNIYATQSKWNEAGMVRKVMRDTGVKKMPGGSCIEVNNR 519

Query: 567 VHAFSVSDSLHPMRDVLYSVLEQL 590
           VH F   D LHP  + ++ VL +J
Sbjct: 520 VHEFVAGDKLHPQSERIFEVLCKJ 543



 Score =  164 bits (414), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 102/417 (24%), Positives = 204/417 (48%), Gaps = 36/417 (8%)

Query: 3   SNFSPRGINRKNLPNNCLIQSFLSLISKGQL-SEAISSLDLLAQRGIRLPAETLAFILQQ 61
           S++S      K  P+  L  + +  +S  +L +EAI   + +    +R    +L F+L+ 
Sbjct: 89  SHYSHSIFTHKTRPDIYLYNTIIKALSNPELATEAILLYNRILASDLRFDTYSLPFVLKA 148

Query: 62  CAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFS 121
                ++ +G+++H     T   +    ++  LI MY  CG   +AR++FD +  +++  
Sbjct: 149 VVRLLAIHVGRQIHCQAIGTGLVSDIHVVTA-LIQMYSSCGCVSEARQLFDGVCFRDVAF 207

Query: 122 YNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSI 181
           +N M++GYA +G + +AR+LF+ M ER+V+SW  +I GYA+     E +  ++ ++   +
Sbjct: 208 WNAMVAGYAKVGDVDNARHLFERMPERNVISWTAVIAGYAQMDRPNEAITMFRRMQLEEV 267

Query: 182 SCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARR 241
             +E +    L+ C  L  L+L   +H  +   G    V ++++++D YAKCG++  A  
Sbjct: 268 EPDEIAMLAALSACAHLGALELGEWIHNYIDKHGLSKIVPLNNALIDMYAKCGKIEKALE 327

Query: 242 LFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKA 301
           +F   + + V+TWT+M+ G A                                +GLG++A
Sbjct: 328 VFKNMEHKSVITWTSMIDGLA-------------------------------LHGLGREA 356

Query: 302 LELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFL-IRTNFRSNTIVMSSLID 360
           LE+F+ M   RI+PN+ TF + L AC  +  ++ G+     +  +   +        +ID
Sbjct: 357 LEMFSCMERNRIKPNEITFVAILSACCHVGLVEMGRWYFKCMGTKYGIKPKIQHYGCMID 416

Query: 361 MYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKP 417
           +  + G L + +++      + N+ +W ++++A   HG  E   +    +++  V+P
Sbjct: 417 LLGRAGFLQEAQELVRGMPFEANAPIWGSLLAAARIHGDAELGKQALQHLIK--VEP 471


>gi|345505210|gb|AEN99829.1| chlororespiratory reduction 4, partial [Barbarea verna]
          Length = 588

 Score =  311 bits (796), Expect = 7e-82,   Method: Compositional matrix adjust.
 Identities = 175/534 (32%), Positives = 288/534 (53%), Gaps = 43/534 (8%)

Query: 42  LLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKC 101
           L+ + G+ +   +L+ +L+ C+    ++ G ++H  L+ T   +   FL N LI +Y KC
Sbjct: 86  LMLENGVSVDKFSLSLVLKACSRLGFVQEGMQIHGFLRKTGIWS-DLFLQNCLIGLYLKC 144

Query: 102 GSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAE--RDVVSWNTMIIG 159
           G    AR++FD++P ++  SYN+M+ GY   G++  AR LFD M +  ++++SWN+MI G
Sbjct: 145 GCLGFARQIFDRMPQRDSVSYNSMIDGYVKCGLIGSARELFDLMPKEMKNLISWNSMISG 204

Query: 160 YAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSN 219
           YA++    +G+                               KL  ++  + L++     
Sbjct: 205 YAQT---SDGVNIAS---------------------------KLFAEMPEKDLISW---- 230

Query: 220 VVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPE 279
               +S++D Y K G + DA+ LF     RDV+TW TM+ GYAKLG +  A  LF++MP 
Sbjct: 231 ----NSLIDGYVKHGRMEDAKDLFYVMPRRDVVTWATMIDGYAKLGFVHKAKTLFDQMPH 286

Query: 280 KNPVSWTTLIAGYTRNGLGQKALELFTRM-MILRIRPNQHTFSSCLCACASIVSLKHGKQ 338
           ++ V++ +++AGY +N    +ALE+F+ M     + P++ T    L A A +  L     
Sbjct: 287 RDVVAYNSMMAGYVQNKYNMEALEIFSDMEKESHLSPDETTLVIVLSAIAQLGRLSKAMD 346

Query: 339 VHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHG 398
           +H +++   F     +  +LIDMYSKCG +     VF+  +NK     WN MI  L  HG
Sbjct: 347 MHLYIVEKQFFLGGKLGVALIDMYSKCGSIQQAMLVFERIENKSIDH-WNAMIGGLAIHG 405

Query: 399 YDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHH 458
             E A  +  ++ R S+KPD IT   ILNAC+HSGLV+EGL  FE M     I P  +H+
Sbjct: 406 LGESAFDMLLEIERRSIKPDDITFVGILNACSHSGLVKEGLLCFELMRRKHKIEPRLQHY 465

Query: 459 ACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNP 518
            C++++L+++G  +   N +E+MP E +  +W      C  H   + G  V   LI Q  
Sbjct: 466 GCMVDILSRSGSIELAKNLIEEMPMEPNDVIWRTFLTACSHHKEFETGEVVAKHLILQAG 525

Query: 519 QSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSV 572
            + +++ LLS++Y++ G  +   +VR ++ ER+ +K    SWIE++ +VH F V
Sbjct: 526 YNPSSYVLLSNMYASFGMWKDARRVRTMMKERELQKVPGCSWIELDGRVHEFFV 579



 Score =  142 bits (358), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 103/384 (26%), Positives = 197/384 (51%), Gaps = 34/384 (8%)

Query: 149 DVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVH 208
           D   WN +I  ++     +  L ++ ++    +S ++FS + +L  C +L  ++   Q+H
Sbjct: 60  DPFLWNAVIKSHSHGVDPKRALIWFCLMLENGVSVDKFSLSLVLKACSRLGFVQEGMQIH 119

Query: 209 GQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDME 268
           G +  TG  S++ + + ++  Y KCG L  AR++FD    RD +++ +M+ GY K G + 
Sbjct: 120 GFLRKTGIWSDLFLQNCLIGLYLKCGCLGFARQIFDRMPQRDSVSYNSMIDGYVKCGLIG 179

Query: 269 SASKLFNEMPE--KNPVSWTTLIAGYTRNGLGQK-ALELFTRMMILRIRPNQHTFSSCLC 325
           SA +LF+ MP+  KN +SW ++I+GY +   G   A +LF  M      P +      L 
Sbjct: 180 SARELFDLMPKEMKNLISWNSMISGYAQTSDGVNIASKLFAEM------PEKD-----LI 228

Query: 326 ACASIVS--LKHGKQVHGF-LIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKE 382
           +  S++   +KHG+      L     R + +  +++ID Y+K G ++  + +FD   ++ 
Sbjct: 229 SWNSLIDGYVKHGRMEDAKDLFYVMPRRDVVTWATMIDGYAKLGFVHKAKTLFDQMPHR- 287

Query: 383 NSMLWNTMISALTQHGYDEQAIRLFHDMVRSS-VKPDKITLAVILNACTHSGLVQEGLTY 441
           + + +N+M++   Q+ Y+ +A+ +F DM + S + PD+ TL ++L+A    G +      
Sbjct: 288 DVVAYNSMMAGYVQNKYNMEALEIFSDMEKESHLSPDETTLVIVLSAIAQLGRLS----- 342

Query: 442 FESMTHDLGIIPNQ-----EHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGV 496
            ++M   L I+  Q     +    LI++ ++ G   Q M   E++  +   + WNA+ G 
Sbjct: 343 -KAMDMHLYIVEKQFFLGGKLGVALIDMYSKCGSIQQAMLVFERIENKSIDH-WNAMIGG 400

Query: 497 CRIHGNIDMGRKVVDQLIDQNPQS 520
             IHG   +G    D L++   +S
Sbjct: 401 LAIHG---LGESAFDMLLEIERRS 421



 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 73/305 (23%), Positives = 120/305 (39%), Gaps = 88/305 (28%)

Query: 207 VHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGD 266
           +  +++ TGF+ N  +++ IV A+A       +RR +    AR V              +
Sbjct: 6   IXARLIKTGFIXNSNLTTRIVLAFAA------SRRPYLAEFARCVFQ------------N 47

Query: 267 MESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCA 326
             S S    E+  ++P  W  +I  ++     ++AL  F  M+   +  ++ + S  L A
Sbjct: 48  YHSCSFAHGEV--EDPFLWNAVIKSHSHGVDPKRALIWFCLMLENGVSVDKFSLSLVLKA 105

Query: 327 CASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKE---- 382
           C+ +  ++ G Q+HGFL +T   S+  + + LI +Y KCGCL   RQ+FD    ++    
Sbjct: 106 CSRLGFVQEGMQIHGFLRKTGIWSDLFLQNCLIGLYLKCGCLGFARQIFDRMPQRDSVSY 165

Query: 383 NSML----------------------------WNTMISALTQ------------------ 396
           NSM+                            WN+MIS   Q                  
Sbjct: 166 NSMIDGYVKCGLIGSARELFDLMPKEMKNLISWNSMISGYAQTSDGVNIASKLFAEMPEK 225

Query: 397 --------------HGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYF 442
                         HG  E A  LF+ M R     D +T A +++     G V +  T F
Sbjct: 226 DLISWNSLIDGYVKHGRMEDAKDLFYVMPRR----DVVTWATMIDGYAKLGFVHKAKTLF 281

Query: 443 ESMTH 447
           + M H
Sbjct: 282 DQMPH 286



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 36/113 (31%), Positives = 59/113 (52%), Gaps = 4/113 (3%)

Query: 382 ENSMLWNTMISALTQHGYD-EQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLT 440
           E+  LWN +I + + HG D ++A+  F  M+ + V  DK +L+++L AC+  G VQEG+ 
Sbjct: 59  EDPFLWNAVIKSHS-HGVDPKRALIWFCLMLENGVSVDKFSLSLVLKACSRLGFVQEGMQ 117

Query: 441 YFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNAL 493
                    GI  +     CLI L  + GC        ++MP + DS  +N++
Sbjct: 118 -IHGFLRKTGIWSDLFLQNCLIGLYLKCGCLGFARQIFDRMP-QRDSVSYNSM 168


>gi|449468660|ref|XP_004152039.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g06145-like [Cucumis sativus]
          Length = 697

 Score =  311 bits (796), Expect = 8e-82,   Method: Compositional matrix adjust.
 Identities = 170/513 (33%), Positives = 280/513 (54%), Gaps = 36/513 (7%)

Query: 116 VKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFY-K 174
           +++ F  +  +S    L  + +    F  M   +V  +N MI G+   G     L+ Y  
Sbjct: 165 IQDCFLVHQFISASFALNSVHYPVFAFTQMENPNVFVYNAMIKGFVYCGYPFRALQCYVH 224

Query: 175 VLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCG 234
           +L   ++    ++F+ ++  C  +  ++L + VH  +   GF S++ + +++VD Y+K  
Sbjct: 225 MLEESNVLPTSYTFSSLVKACTFMCAVELGQMVHCHIWKKGFESHLFVQTALVDFYSKLE 284

Query: 235 ELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNP------------ 282
            LS+AR++FDE   RD   WT MVS  A++GDM+SA KLF EMPE+N             
Sbjct: 285 ILSEARKVFDEMCERDAFAWTAMVSALARVGDMDSARKLFEEMPERNTATWNTMIDGYAR 344

Query: 283 -------------------VSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSC 323
                              +SWTT+I  Y++N   Q AL +++ M +  I P++ T S+ 
Sbjct: 345 LGNVESAELLFNQMPTKDIISWTTMITCYSQNKQYQDALAIYSEMRLNGIIPDEVTMSTV 404

Query: 324 LCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVF-DLTDNKE 382
             ACA I +L+ GK++H +++      +  + S+L+DMY+KCG L+    +F  LTD  +
Sbjct: 405 ASACAHIGALELGKEIHHYVMSQGLNLDVYIGSALVDMYAKCGSLDLSLLIFFKLTD--K 462

Query: 383 NSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYF 442
           N   WN +I  L  HGY E+A+R+F  M R  + P+ +T   IL+ACTH+GLV EG + F
Sbjct: 463 NLYCWNAVIEGLAVHGYAEKALRMFAIMEREKIMPNGVTFISILSACTHAGLVDEGRSRF 522

Query: 443 ESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGN 502
            SMT D  I P+  H+ C++++L+++G  ++ +  ++ M +E +S +W AL   C++HGN
Sbjct: 523 LSMTRDYDIRPDIRHYGCMVDMLSKSGYLNEALELIKSMEFEPNSIIWGALLNGCKLHGN 582

Query: 503 IDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQF-KKEQAISWI 561
            ++    V+QL+   P +S  + LL S+Y+       V  +R ++ E+   KK    SWI
Sbjct: 583 CEIAEDAVEQLMILEPMNSGHYNLLVSMYAEEKDWMEVAHIRSMMKEKGVEKKYPGSSWI 642

Query: 562 EIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQM 594
           E+E  +H FS S   HP  D +Y VL +L GQ+
Sbjct: 643 ELEGTIHQFSASADSHPDSDKIYFVLTELDGQL 675



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 100/394 (25%), Positives = 174/394 (44%), Gaps = 64/394 (16%)

Query: 42  LLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKC 101
           +L +  +   + T + +++ C    +++LG+ VH H+   +      F+   L+  Y K 
Sbjct: 225 MLEESNVLPTSYTFSSLVKACTFMCAVELGQMVHCHI-WKKGFESHLFVQTALVDFYSKL 283

Query: 102 GSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYA 161
               +ARKVFD++  ++ F++  M+S  A +G M  AR LF+ M ER+  +WNTMI GYA
Sbjct: 284 EILSEARKVFDEMCERDAFAWTAMVSALARVGDMDSARKLFEEMPERNTATWNTMIDGYA 343

Query: 162 KSGAVE-------------------------------EGLKFYKVLRRFSISCNEFSFAG 190
           + G VE                               + L  Y  +R   I  +E + + 
Sbjct: 344 RLGNVESAELLFNQMPTKDIISWTTMITCYSQNKQYQDALAIYSEMRLNGIIPDEVTMST 403

Query: 191 ILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARD 250
           + + C  +  L+L +++H  V+  G   +V I S++VD YAKCG L  +  +F +   ++
Sbjct: 404 VASACAHIGALELGKEIHHYVMSQGLNLDVYIGSALVDMYAKCGSLDLSLLIFFKLTDKN 463

Query: 251 VLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMI 310
           +  W  ++ G A                                +G  +KAL +F  M  
Sbjct: 464 LYCWNAVIEGLAV-------------------------------HGYAEKALRMFAIMER 492

Query: 311 LRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRT-NFRSNTIVMSSLIDMYSKCGCLN 369
            +I PN  TF S L AC     +  G+     + R  + R +      ++DM SK G LN
Sbjct: 493 EKIMPNGVTFISILSACTHAGLVDEGRSRFLSMTRDYDIRPDIRHYGCMVDMLSKSGYLN 552

Query: 370 DGRQVFDLTDNKENSMLWNTMISALTQHGYDEQA 403
           +  ++    + + NS++W  +++    HG  E A
Sbjct: 553 EALELIKSMEFEPNSIIWGALLNGCKLHGNCEIA 586



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 41/155 (26%), Positives = 77/155 (49%), Gaps = 6/155 (3%)

Query: 32  QLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLS 91
           Q  +A++    +   GI     T++ +   CA   +L+LGK +H H  ++Q      ++ 
Sbjct: 378 QYQDALAIYSEMRLNGIIPDEVTMSTVASACAHIGALELGKEIH-HYVMSQGLNLDVYIG 436

Query: 92  NHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDV- 150
           + L+ MY KCGS   +  +F K+  KNL+ +N ++ G A  G  + A  +F  M    + 
Sbjct: 437 SALVDMYAKCGSLDLSLLIFFKLTDKNLYCWNAVIEGLAVHGYAEKALRMFAIMEREKIM 496

Query: 151 ---VSWNTMIIGYAKSGAVEEGL-KFYKVLRRFSI 181
              V++ +++     +G V+EG  +F  + R + I
Sbjct: 497 PNGVTFISILSACTHAGLVDEGRSRFLSMTRDYDI 531


>gi|357133320|ref|XP_003568274.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Brachypodium distachyon]
          Length = 919

 Score =  311 bits (796), Expect = 8e-82,   Method: Compositional matrix adjust.
 Identities = 172/570 (30%), Positives = 296/570 (51%), Gaps = 69/570 (12%)

Query: 25  LSLISKGQLSEAISSLDLLAQ---RGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLT 81
           L L++ GQ+ +   S D+  +    G+R    T   +L+ C  +  + LG+++H  L + 
Sbjct: 315 LMLVAYGQIDDLAKSFDIFYRMLAAGVRPNKFTYPCMLRTCTHTGEIGLGEQIH-SLTIK 373

Query: 82  QRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNL 141
                  ++S  LI MY K                                G +  A+ +
Sbjct: 374 NGFQSDMYVSGVLIDMYSK-------------------------------YGWLDKAQRI 402

Query: 142 FDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEEL 201
            D + E+DVVSW +MI GY +    +E L+ +K ++   I  +    A  ++ C  ++ +
Sbjct: 403 LDMIEEKDVVSWTSMIAGYVQHEFCKEALETFKEMQACGIWPDNIGLASAISACAGIKAV 462

Query: 202 KLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGY 261
               Q+H +V V+G+ ++V I                               W  +V  Y
Sbjct: 463 HQGSQIHARVYVSGYSADVSI-------------------------------WNGLVYLY 491

Query: 262 AKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFS 321
           A+ G  + A   F  +  K  ++W  LI+G+ ++GL ++AL++F +M     + N  TF 
Sbjct: 492 ARCGISKEAFSSFEAIEHKEGITWNGLISGFAQSGLYEEALKVFMKMDQAGAKYNVFTFV 551

Query: 322 SCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGR-QVFDLTDN 380
           S + A A++  +K GKQ+H  +I+T + S T + ++LI +Y KCG + D +   F++T  
Sbjct: 552 SSISASANLADIKQGKQIHARVIKTGYTSETEISNALISLYGKCGSIEDAKMDFFEMT-- 609

Query: 381 KENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLT 440
           K N + WNT+I+  +QHG   +A+ LF  M +  +KP  +T   +L AC+H GLV+EGL 
Sbjct: 610 KRNEVSWNTIITCCSQHGRGLEALDLFDQMKQQGLKPSDVTFVGVLTACSHVGLVEEGLC 669

Query: 441 YFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIH 500
           YF+SM+++ GI P  +H+AC++++L +AG  D+    +E+MP   DS +W  L   C++H
Sbjct: 670 YFKSMSNEHGIHPRPDHYACVVDILGRAGQLDRAKRFVEEMPIPADSMVWRTLLSACKVH 729

Query: 501 GNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISW 560
            N+++G      L++  P  SA++ LLS+ Y+  GK    +++R+++ +R  +KE   SW
Sbjct: 730 KNLEIGEFAAKHLLELEPHDSASYVLLSNAYAVTGKWASRDQIRKIMKDRGVRKEPGRSW 789

Query: 561 IEIENKVHAFSVSDSLHPMRDVLYSVLEQL 590
           IE++N VHAF V D LHP+ D +Y+ L  L
Sbjct: 790 IEVKNVVHAFFVGDRLHPLADQIYNFLSHL 819



 Score =  173 bits (439), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 104/371 (28%), Positives = 185/371 (49%), Gaps = 34/371 (9%)

Query: 123 NNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSIS 182
           N ++  YA  G ++ AR +F+ ++ RD VSW  ++ GYA++G  EE ++ Y+ + R  + 
Sbjct: 81  NLLIDLYAKKGFVRRARRVFEELSVRDNVSWVAVLSGYAQNGLGEEAVRLYREMHRSGVV 140

Query: 183 CNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRL 242
              +  + IL+ C K E  +L R +H QV   GF S   + ++++  Y +C     A R+
Sbjct: 141 PTPYVLSSILSACTKTELFQLGRLIHVQVYKQGFFSETFVGNALISLYLRCRSFRLADRV 200

Query: 243 FDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKAL 302
           F +    D +T+ T++SG+A+ G                                G +AL
Sbjct: 201 FCDMLYCDSVTFNTLISGHAQCGH-------------------------------GDRAL 229

Query: 303 ELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMY 362
            +F  M +  + P+  T +S L AC+++  L+ GKQ+H +L++     + I+  SL+D+Y
Sbjct: 230 GIFDEMQLSGLSPDSVTIASLLAACSAVGDLRKGKQLHSYLLKAGMSLDYIMEGSLLDLY 289

Query: 363 SKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITL 422
            K G + +  Q+FD  D + N +LWN M+ A  Q     ++  +F+ M+ + V+P+K T 
Sbjct: 290 VKSGDIEEALQIFDSGD-RTNVVLWNLMLVAYGQIDDLAKSFDIFYRMLAAGVRPNKFTY 348

Query: 423 AVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMP 482
             +L  CTH+G +  G     S+T   G   +      LI++ ++ G  D+    L+ M 
Sbjct: 349 PCMLRTCTHTGEIGLG-EQIHSLTIKNGFQSDMYVSGVLIDMYSKYGWLDKAQRILD-MI 406

Query: 483 YEHDSYLWNAL 493
            E D   W ++
Sbjct: 407 EEKDVVSWTSM 417



 Score =  167 bits (422), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 112/464 (24%), Positives = 207/464 (44%), Gaps = 76/464 (16%)

Query: 35  EAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHL 94
           EA+     + + G+      L+ IL  C +++  +LG+ +H+ +   Q     TF+ N L
Sbjct: 126 EAVRLYREMHRSGVVPTPYVLSSILSACTKTELFQLGRLIHVQV-YKQGFFSETFVGNAL 184

Query: 95  ISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWN 154
           IS+Y +C S                                + A  +F +M   D V++N
Sbjct: 185 ISLYLRCRS-------------------------------FRLADRVFCDMLYCDSVTFN 213

Query: 155 TMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVT 214
           T+I G+A+ G  +  L  +  ++   +S +  + A +L  C  + +L+  +Q+H  +L  
Sbjct: 214 TLISGHAQCGHGDRALGIFDEMQLSGLSPDSVTIASLLAACSAVGDLRKGKQLHSYLLKA 273

Query: 215 GFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLF 274
           G   + ++  S++D Y K G++ +A ++FD  D  +V+ W  M+  Y ++ D+       
Sbjct: 274 GMSLDYIMEGSLLDLYVKSGDIEEALQIFDSGDRTNVVLWNLMLVAYGQIDDL------- 326

Query: 275 NEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLK 334
                                    K+ ++F RM+   +RPN+ T+   L  C     + 
Sbjct: 327 ------------------------AKSFDIFYRMLAAGVRPNKFTYPCMLRTCTHTGEIG 362

Query: 335 HGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISAL 394
            G+Q+H   I+  F+S+  V   LIDMYSK G L+  +++ D+ + K + + W +MI+  
Sbjct: 363 LGEQIHSLTIKNGFQSDMYVSGVLIDMYSKYGWLDKAQRILDMIEEK-DVVSWTSMIAGY 421

Query: 395 TQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACT-----HSGLVQEGLTYFESMTHDL 449
            QH + ++A+  F +M    + PD I LA  ++AC      H G       Y    + D+
Sbjct: 422 VQHEFCKEALETFKEMQACGIWPDNIGLASAISACAGIKAVHQGSQIHARVYVSGYSADV 481

Query: 450 GIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNAL 493
            I         L+ L A+ G S +  +  E + ++ +   WN L
Sbjct: 482 SIWNG------LVYLYARCGISKEAFSSFEAIEHK-EGITWNGL 518



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 77/302 (25%), Positives = 139/302 (46%), Gaps = 47/302 (15%)

Query: 145 MAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELK-- 202
           M  R   S+N  + G+      E      K+L  F+  C ++   G +     L   +  
Sbjct: 1   MTPRGAASFNRPLAGFLAPDDPE------KLLPLFAAKCRQYMVLGAVDFACALRACRGS 54

Query: 203 -----LTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTM 257
                L  ++H + ++ G     +I + ++D YAK G +  ARR+               
Sbjct: 55  GRRWPLVPEIHAKAIICGLSGYRIIGNLLIDLYAKKGFVRRARRV--------------- 99

Query: 258 VSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQ 317
                           F E+  ++ VSW  +++GY +NGLG++A+ L+  M    + P  
Sbjct: 100 ----------------FEELSVRDNVSWVAVLSGYAQNGLGEEAVRLYREMHRSGVVPTP 143

Query: 318 HTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVF-D 376
           +  SS L AC      + G+ +H  + +  F S T V ++LI +Y +C       +VF D
Sbjct: 144 YVLSSILSACTKTELFQLGRLIHVQVYKQGFFSETFVGNALISLYLRCRSFRLADRVFCD 203

Query: 377 LTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQ 436
           +     +S+ +NT+IS   Q G+ ++A+ +F +M  S + PD +T+A +L AC+  G ++
Sbjct: 204 ML--YCDSVTFNTLISGHAQCGHGDRALGIFDEMQLSGLSPDSVTIASLLAACSAVGDLR 261

Query: 437 EG 438
           +G
Sbjct: 262 KG 263



 Score = 65.9 bits (159), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 71/294 (24%), Positives = 119/294 (40%), Gaps = 46/294 (15%)

Query: 11  NRKNLPNNCLIQSFLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKL 70
           +++ +  N LI  F      G   EA+     + Q G +    T    +   A    +K 
Sbjct: 509 HKEGITWNGLISGF---AQSGLYEEALKVFMKMDQAGAKYNVFTFVSSISASANLADIKQ 565

Query: 71  GKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYA 130
           GK++H  + +    T  T +SN LIS+Y KCGS  DA+  F ++  +N  S+N +++  +
Sbjct: 566 GKQIHARV-IKTGYTSETEISNALISLYGKCGSIEDAKMDFFEMTKRNEVSWNTIITCCS 624

Query: 131 NLGMMKHARNLFDNMAERDVVSWNTMIIGYAKS----GAVEEGLKFYKVLRRFSISCNEF 186
             G    A +LFD M ++ +   +   +G   +    G VEEGL ++K +       NE 
Sbjct: 625 QHGRGLEALDLFDQMKQQGLKPSDVTFVGVLTACSHVGLVEEGLCYFKSMS------NEH 678

Query: 187 SFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDET 246
                             R  H               + +VD   + G+L  A+R  +E 
Sbjct: 679 GIH--------------PRPDH--------------YACVVDILGRAGQLDRAKRFVEEM 710

Query: 247 D-ARDVLTWTTMVSG---YAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNG 296
               D + W T++S    +  L   E A+K   E+   +  S+  L   Y   G
Sbjct: 711 PIPADSMVWRTLLSACKVHKNLEIGEFAAKHLLELEPHDSASYVLLSNAYAVTG 764


>gi|356565531|ref|XP_003550993.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
           chloroplastic-like [Glycine max]
          Length = 628

 Score =  311 bits (796), Expect = 8e-82,   Method: Compositional matrix adjust.
 Identities = 167/484 (34%), Positives = 264/484 (54%), Gaps = 14/484 (2%)

Query: 129 YANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSF 188
           YA+LG + H+  LF      +V  W  +I  +A        L +Y  +    I  N F+ 
Sbjct: 65  YASLGHLHHSVTLFHRTPNPNVFLWTHIINAHAHFDLFHHALSYYSQMLTHPIQPNAFTL 124

Query: 189 AGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDA 248
           + +L  C     L   R VH   +  G  S++ +S+ +VDAYA+ G+++ A++LFD    
Sbjct: 125 SSLLKACT----LHPARAVHSHAIKFGLSSHLYVSTGLVDAYARGGDVASAQKLFDAMPE 180

Query: 249 RDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRM 308
           R ++++T M++ YAK G +  A  LF  M  K+ V W  +I GY ++G   +AL  F +M
Sbjct: 181 RSLVSYTAMLTCYAKHGMLPEARVLFEGMGMKDVVCWNVMIDGYAQHGCPNEALVFFRKM 240

Query: 309 MIL-------RIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDM 361
           M++       ++RPN+ T  + L +C  + +L+ GK VH ++     + N  V ++L+DM
Sbjct: 241 MMMMGGNGNGKVRPNEITVVAVLSSCGQVGALECGKWVHSYVENNGIKVNVRVGTALVDM 300

Query: 362 YSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKIT 421
           Y KCG L D R+VFD+ + K+  + WN+MI     HG+ ++A++LFH+M    VKP  IT
Sbjct: 301 YCKCGSLEDARKVFDVMEGKD-VVAWNSMIMGYGIHGFSDEALQLFHEMCCIGVKPSDIT 359

Query: 422 LAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKM 481
              +L AC H+GLV +G   F+SM    G+ P  EH+ C++ LL +AG   +  + +  M
Sbjct: 360 FVAVLTACAHAGLVSKGWEVFDSMKDGYGMEPKVEHYGCMVNLLGRAGRMQEAYDLVRSM 419

Query: 482 PYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVE 541
             E D  LW  L   CRIH N+ +G ++ + L+     SS T+ LLS++Y+A      V 
Sbjct: 420 EVEPDPVLWGTLLWACRIHSNVSLGEEIAEILVSNGLASSGTYVLLSNMYAAARNWVGVA 479

Query: 542 KVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQMGED--AP 599
           KVR ++     +KE   S IE++N+VH F   D  HP    +YS+LE++ G + E    P
Sbjct: 480 KVRSMMKGSGVEKEPGCSSIEVKNRVHEFVAGDRRHPRSKDIYSMLEKMNGWLKERHYTP 539

Query: 600 SLDA 603
             DA
Sbjct: 540 KTDA 543



 Score =  154 bits (388), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 86/269 (31%), Positives = 139/269 (51%), Gaps = 12/269 (4%)

Query: 51  PAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKV 110
           P +  AF L    ++ +L   + VH H  +    +   ++S  L+  Y + G    A+K+
Sbjct: 116 PIQPNAFTLSSLLKACTLHPARAVHSH-AIKFGLSSHLYVSTGLVDAYARGGDVASAQKL 174

Query: 111 FDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGL 170
           FD +P ++L SY  ML+ YA  GM+  AR LF+ M  +DVV WN MI GYA+ G   E L
Sbjct: 175 FDAMPERSLVSYTAMLTCYAKHGMLPEARVLFEGMGMKDVVCWNVMIDGYAQHGCPNEAL 234

Query: 171 KFYK-------VLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVIS 223
            F++             +  NE +   +L+ C ++  L+  + VH  V   G   NV + 
Sbjct: 235 VFFRKMMMMMGGNGNGKVRPNEITVVAVLSSCGQVGALECGKWVHSYVENNGIKVNVRVG 294

Query: 224 SSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEM----PE 279
           +++VD Y KCG L DAR++FD  + +DV+ W +M+ GY   G  + A +LF+EM     +
Sbjct: 295 TALVDMYCKCGSLEDARKVFDVMEGKDVVAWNSMIMGYGIHGFSDEALQLFHEMCCIGVK 354

Query: 280 KNPVSWTTLIAGYTRNGLGQKALELFTRM 308
            + +++  ++      GL  K  E+F  M
Sbjct: 355 PSDITFVAVLTACAHAGLVSKGWEVFDSM 383



 Score = 46.2 bits (108), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 32/116 (27%), Positives = 52/116 (44%), Gaps = 8/116 (6%)

Query: 332 SLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMI 391
           S  H  Q+H  L+R     + I+   L   Y+  G L+    +F  T N  N  LW  +I
Sbjct: 35  STHHLLQIHAALLRRGLHHHPILNFKLQRSYASLGHLHHSVTLFHRTPNP-NVFLWTHII 93

Query: 392 SALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACT-------HSGLVQEGLT 440
           +A         A+  +  M+   ++P+  TL+ +L ACT       HS  ++ GL+
Sbjct: 94  NAHAHFDLFHHALSYYSQMLTHPIQPNAFTLSSLLKACTLHPARAVHSHAIKFGLS 149


>gi|449449950|ref|XP_004142727.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g47840-like [Cucumis sativus]
          Length = 712

 Score =  311 bits (796), Expect = 8e-82,   Method: Compositional matrix adjust.
 Identities = 162/568 (28%), Positives = 291/568 (51%), Gaps = 64/568 (11%)

Query: 27  LISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTP 86
           L+  G     ++    + +  +   +   A  L+  A+S +L  G+ +H    L +    
Sbjct: 192 LVRAGYSEAGLAYFSGMGRSKVEYDSYAYAIALKASADSGALNHGRSIHTQ-TLKKGFDE 250

Query: 87  TTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMA 146
            +F++N L +MY KC                               G + +  + F  M 
Sbjct: 251 NSFVANSLTTMYNKC-------------------------------GKLDYGLHTFRKMR 279

Query: 147 ERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQ 206
             DVVSW T++  Y + G  + GL+ +K +R  ++  NE++F+ +++ C     LK   Q
Sbjct: 280 TLDVVSWTTIVTAYIQMGKEDCGLQAFKRMRASNVIPNEYTFSAVISCCANFARLKWGEQ 339

Query: 207 VHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGD 266
           +H  VL  GF++ + +++SI+  Y+KCGEL+                             
Sbjct: 340 LHAHVLCVGFVNALSVANSIMTLYSKCGELA----------------------------- 370

Query: 267 MESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCA 326
             S SK+F  M  ++ ++W+T+IA Y++ G G++A E  +RM     +PN+   +S L  
Sbjct: 371 --SVSKVFCSMKFRDIITWSTIIAAYSQVGYGEEAFEYLSRMRSEGPKPNEFALASVLSV 428

Query: 327 CASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSML 386
           C S+  L+ GKQ+H  ++       ++V S+LI MY+KCG + +  ++F +   K++ + 
Sbjct: 429 CGSMAILEQGKQLHAHVLSVGLEQTSMVCSALIIMYAKCGSIAEASKIF-MDSWKDDIIS 487

Query: 387 WNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMT 446
           W  MIS   +HG+ ++AI LF ++ +  ++PD +T   +L AC+H+G+V  G  YF SM+
Sbjct: 488 WTAMISGYAEHGHSQEAIELFENIQKVGLRPDSVTFIGVLTACSHAGMVDLGFYYFNSMS 547

Query: 447 HDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMG 506
            D  I P++EH+ C+I+LL +AG        +  MP + D  +W+ L   CRIHG++D G
Sbjct: 548 KDYHITPSKEHYGCMIDLLCRAGRLHDAETLIRSMPIQWDDVVWSTLLRACRIHGDVDCG 607

Query: 507 RKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENK 566
           ++   +++  +P  + TH  L++I++A GK +    +R L+  +   KE   S +++++ 
Sbjct: 608 QRAAAEVLKLDPNCAGTHITLANIFAAKGKWKEAANIRMLMKSKGVVKEPGWSSVKVKDS 667

Query: 567 VHAFSVSDSLHPMRDVLYSVLEQLAGQM 594
           V AF   D  HP  + +Y++LE+LA  M
Sbjct: 668 VFAFVSGDRSHPQGEDIYNILEELASGM 695



 Score =  152 bits (383), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 104/417 (24%), Positives = 190/417 (45%), Gaps = 38/417 (9%)

Query: 116 VKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKV 175
           V ++F  + +L  Y  +G +  +  +FD M  R+ V+W  +I G  ++G  E GL ++  
Sbjct: 148 VNSVFVGSALLDMYMKIGEIGRSCKVFDEMPTRNAVTWTAVITGLVRAGYSEAGLAYFSG 207

Query: 176 LRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGE 235
           + R  +  + +++A  L        L   R +H Q L  GF  N  +++S+   Y KCG+
Sbjct: 208 MGRSKVEYDSYAYAIALKASADSGALNHGRSIHTQTLKKGFDENSFVANSLTTMYNKCGK 267

Query: 236 LSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRN 295
           L      F +    DV++WTT+V+ Y ++G  +                           
Sbjct: 268 LDYGLHTFRKMRTLDVVSWTTIVTAYIQMGKEDC-------------------------- 301

Query: 296 GLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVM 355
                 L+ F RM    + PN++TFS+ +  CA+   LK G+Q+H  ++   F +   V 
Sbjct: 302 -----GLQAFKRMRASNVIPNEYTFSAVISCCANFARLKWGEQLHAHVLCVGFVNALSVA 356

Query: 356 SSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSV 415
           +S++ +YSKCG L    +VF  +    + + W+T+I+A +Q GY E+A      M     
Sbjct: 357 NSIMTLYSKCGELASVSKVF-CSMKFRDIITWSTIIAAYSQVGYGEEAFEYLSRMRSEGP 415

Query: 416 KPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGC-SDQL 474
           KP++  LA +L+ C    ++++G    +   H L +   Q    C   ++  A C S   
Sbjct: 416 KPNEFALASVLSVCGSMAILEQGK---QLHAHVLSVGLEQTSMVCSALIIMYAKCGSIAE 472

Query: 475 MNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVD--QLIDQNPQSSATHGLLSS 529
            +++    ++ D   W A+      HG+     ++ +  Q +   P S    G+L++
Sbjct: 473 ASKIFMDSWKDDIISWTAMISGYAEHGHSQEAIELFENIQKVGLRPDSVTFIGVLTA 529



 Score =  132 bits (331), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 87/323 (26%), Positives = 157/323 (48%), Gaps = 35/323 (10%)

Query: 118 NLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLR 177
           +L   NN L        +K AR+LFD + +RD VSW  +I GY  S    E L+ +  +R
Sbjct: 48  DLAEANNQLKILVKTNHLKDARDLFDQLPQRDEVSWTNIISGYVNSSDSSEALRLFSKMR 107

Query: 178 -RFSISCNEFSFA-GILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGE 235
            +  +  + F  + G+ T  + L  L  T  +HG  + TG +++V + S+++D Y K GE
Sbjct: 108 LQSELRIDPFLLSLGLKTCGLGLNYLYGT-NLHGFSVKTGLVNSVFVGSALLDMYMKIGE 166

Query: 236 LSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRN 295
           +  + ++FDE   R+ +TWT +++G  +                          AGY+  
Sbjct: 167 IGRSCKVFDEMPTRNAVTWTAVITGLVR--------------------------AGYSEA 200

Query: 296 GLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVM 355
           GL       F+ M   ++  + + ++  L A A   +L HG+ +H   ++  F  N+ V 
Sbjct: 201 GLA-----YFSGMGRSKVEYDSYAYAIALKASADSGALNHGRSIHTQTLKKGFDENSFVA 255

Query: 356 SSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSV 415
           +SL  MY+KCG L+ G   F      +  + W T+++A  Q G ++  ++ F  M  S+V
Sbjct: 256 NSLTTMYNKCGKLDYGLHTFRKMRTLD-VVSWTTIVTAYIQMGKEDCGLQAFKRMRASNV 314

Query: 416 KPDKITLAVILNACTHSGLVQEG 438
            P++ T + +++ C +   ++ G
Sbjct: 315 IPNEYTFSAVISCCANFARLKWG 337


>gi|51090919|dbj|BAD35524.1| selenium-binding protein-like [Oryza sativa Japonica Group]
 gi|51090953|dbj|BAD35556.1| selenium-binding protein-like [Oryza sativa Japonica Group]
          Length = 615

 Score =  311 bits (796), Expect = 9e-82,   Method: Compositional matrix adjust.
 Identities = 175/545 (32%), Positives = 287/545 (52%), Gaps = 72/545 (13%)

Query: 42  LLAQRGIRLPAETLAF-----ILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLIS 96
           L A  G+ LP  +  F      +  C E ++L  G++VH  + +T R  P  FL   L++
Sbjct: 27  LRAASGMALPGASARFHEYEAAITACIERRALWEGRQVHARM-ITARYRPAVFLGTRLVT 85

Query: 97  MYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTM 156
           MY +CG+                               +  ARN+ D M ER VVSW TM
Sbjct: 86  MYVRCGA-------------------------------LDDARNVLDRMPERSVVSWTTM 114

Query: 157 IIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGF 216
           I GY+++    E L  +  + R     NE++ A +LT C   + +   +QVH  ++ T F
Sbjct: 115 ISGYSQTERHVEALDLFIKMLRAGCIPNEYTLATVLTSCSGPQSIYQGKQVHSLLVKTNF 174

Query: 217 LSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNE 276
            S++ + SS++D YAK   + +ARR                               +F+ 
Sbjct: 175 ESHMFVGSSLLDMYAKSENIQEARR-------------------------------VFDT 203

Query: 277 MPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHG 336
           +PE++ VS T +I+GY + GL ++AL+LF ++    ++ N  TF++ + A + + SL +G
Sbjct: 204 LPERDVVSCTAIISGYAQKGLDEEALDLFRQLYSEGMQCNHVTFTTLVTALSGLASLDYG 263

Query: 337 KQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSML-WNTMISALT 395
           KQVH  ++R        + +SLIDMYSKCG L   R+VFD  +  E S++ WN M+    
Sbjct: 264 KQVHALILRKELPFFVALQNSLIDMYSKCGKLLYSRRVFD--NMLERSVVSWNAMLMGYG 321

Query: 396 QHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQ 455
           +HG   + I LF D+    VKPD +TL  +L+ C+H GLV EGL  F+++  +   + + 
Sbjct: 322 RHGLGHEVISLFKDL-HKEVKPDSVTLLAVLSGCSHGGLVDEGLDIFDTVVKEQSALLHT 380

Query: 456 EHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLID 515
            H+ C+I+LL ++G  ++ +N +E MP+E    +W +L G CR+H N+ +G  V  +L++
Sbjct: 381 GHYGCIIDLLGRSGRLEKALNLIENMPFESTPSIWGSLLGACRVHANVHVGELVAQKLLE 440

Query: 516 QNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDS 575
             P+++  + +LS+IY+A G  + V KVR+L+ E+   KE   SWI ++  +H F  S+ 
Sbjct: 441 MEPENAGNYVILSNIYAAAGMWKDVFKVRKLMLEKTVTKEPGQSWIILDKVIHTFHSSER 500

Query: 576 LHPMR 580
            HP +
Sbjct: 501 FHPSK 505



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 47/149 (31%), Positives = 73/149 (48%), Gaps = 8/149 (5%)

Query: 30  KGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTF 89
           KG   EA+     L   G++    T   ++   +   SL  GK+VH    L  RK    F
Sbjct: 222 KGLDEEALDLFRQLYSEGMQCNHVTFTTLVTALSGLASLDYGKQVH---ALILRKELPFF 278

Query: 90  --LSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNM-- 145
             L N LI MY KCG  + +R+VFD +  +++ S+N ML GY   G+     +LF ++  
Sbjct: 279 VALQNSLIDMYSKCGKLLYSRRVFDNMLERSVVSWNAMLMGYGRHGLGHEVISLFKDLHK 338

Query: 146 -AERDVVSWNTMIIGYAKSGAVEEGLKFY 173
             + D V+   ++ G +  G V+EGL  +
Sbjct: 339 EVKPDSVTLLAVLSGCSHGGLVDEGLDIF 367


>gi|125543615|gb|EAY89754.1| hypothetical protein OsI_11297 [Oryza sativa Indica Group]
          Length = 648

 Score =  311 bits (796), Expect = 9e-82,   Method: Compositional matrix adjust.
 Identities = 171/541 (31%), Positives = 279/541 (51%), Gaps = 34/541 (6%)

Query: 54  TLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDK 113
           T   +   CA  ++++ G++VH H  +        +L+N L+SMY  CG   DARKVFD 
Sbjct: 105 THTILAAACATRRAIEEGRQVHCH-AVRHGFGRNLYLANALMSMYSACGCLGDARKVFDA 163

Query: 114 IPVKNLFSYNNMLSGYANL-------------------------------GMMKHARNLF 142
            PV +  S+N +L+ Y                                  GM+  AR +F
Sbjct: 164 GPVWDAVSWNTILAAYVQAEDVDQAVGVFARMPERGAAAVSSMVSLFGRRGMVDEARKVF 223

Query: 143 DNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELK 202
           D +  +DV +W  MI  + ++G   E L  +  +R      +E     ++  C +LE  +
Sbjct: 224 DGVERKDVFTWTAMISCFQRNGKFAEALALFSDMRGEGWPVDEAVMVCVVAACARLEVTR 283

Query: 203 LTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYA 262
                HG     G  S + + ++++  Y+    +  ARRLFD     D  +W +M++GY 
Sbjct: 284 NGEMCHGLAFRAGLGSRLNVQNALIHMYSSFLNVVAARRLFDSGQCLDQFSWNSMIAGYL 343

Query: 263 KLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSS 322
           K G ++ A +LF  MP+K+ VSWTT+I+G  +N    +AL +F  M    I+P++ T  S
Sbjct: 344 KNGSVKDAKELFTVMPDKDNVSWTTMISGCVQNDQSSEALTIFNNMQAQGIKPDEVTLVS 403

Query: 323 CLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKE 382
            + AC ++ SL+ GK +H ++    +    I+ +SLIDMY KCGCL    +VFD T  + 
Sbjct: 404 VISACTNMSSLEQGKSMHEYIREHQYTITVILGTSLIDMYMKCGCLESALEVFD-TMEER 462

Query: 383 NSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVK-PDKITLAVILNACTHSGLVQEGLTY 441
            +  WN +I  L  +G   +++ +F +M  SS   P++IT   +L+AC H+GLV+EG  +
Sbjct: 463 GTPCWNAVIVGLAMNGLVMKSLDMFSEMESSSTATPNEITFTGVLSACRHAGLVEEGQHF 522

Query: 442 FESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHG 501
           F+ M H   IIPN  H+ C+++LL +AG   +  N +E MP   D   W AL G C  HG
Sbjct: 523 FKLMQHKYHIIPNIRHYGCMVDLLGRAGYVKEAENLIESMPMSPDVPAWGALLGSCWKHG 582

Query: 502 NIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWI 561
           + ++G +V  +L++ +P     H +LS+IY++ G  + V+ +R  + +    K    S +
Sbjct: 583 DNEVGERVGRKLVNLDPHHDGFHTMLSNIYASEGMWQHVKDLRGSMKQWHVPKIPGSSVV 642

Query: 562 E 562
           E
Sbjct: 643 E 643



 Score =  122 bits (305), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 93/413 (22%), Positives = 176/413 (42%), Gaps = 52/413 (12%)

Query: 9   GINRKNLPNNCLIQSFLSLIS----KGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAE 64
           G+ RK+      + ++ ++IS     G+ +EA++    +   G  +    +  ++  CA 
Sbjct: 225 GVERKD------VFTWTAMISCFQRNGKFAEALALFSDMRGEGWPVDEAVMVCVVAACAR 278

Query: 65  SKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNN 124
            +  + G+  H  L           + N LI MY    + V AR++FD     + FS+N+
Sbjct: 279 LEVTRNGEMCH-GLAFRAGLGSRLNVQNALIHMYSSFLNVVAARRLFDSGQCLDQFSWNS 337

Query: 125 MLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCN 184
           M++GY   G +K A+ LF  M ++D VSW TMI G  ++    E L  +  ++   I  +
Sbjct: 338 MIAGYLKNGSVKDAKELFTVMPDKDNVSWTTMISGCVQNDQSSEALTIFNNMQAQGIKPD 397

Query: 185 EFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFD 244
           E +   +++ C  +  L+  + +H  +    +   V++ +S++D Y KCG L  A  +FD
Sbjct: 398 EVTLVSVISACTNMSSLEQGKSMHEYIREHQYTITVILGTSLIDMYMKCGCLESALEVFD 457

Query: 245 ETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALEL 304
             + R    W  ++ G A                                NGL  K+L++
Sbjct: 458 TMEERGTPCWNAVIVGLAM-------------------------------NGLVMKSLDM 486

Query: 305 FTRMMILRI-RPNQHTFSSCLCACASIVSLKHGKQV-----HGFLIRTNFRSNTIVMSSL 358
           F+ M       PN+ TF+  L AC     ++ G+       H + I  N R        +
Sbjct: 487 FSEMESSSTATPNEITFTGVLSACRHAGLVEEGQHFFKLMQHKYHIIPNIRH----YGCM 542

Query: 359 IDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMV 411
           +D+  + G + +   + +      +   W  ++ +  +HG +E   R+   +V
Sbjct: 543 VDLLGRAGYVKEAENLIESMPMSPDVPAWGALLGSCWKHGDNEVGERVGRKLV 595


>gi|449502685|ref|XP_004161713.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At3g47840-like [Cucumis
           sativus]
          Length = 712

 Score =  311 bits (796), Expect = 9e-82,   Method: Compositional matrix adjust.
 Identities = 162/568 (28%), Positives = 291/568 (51%), Gaps = 64/568 (11%)

Query: 27  LISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTP 86
           L+  G     ++    + +  +   +   A  L+  A+S +L  G+ +H    L +    
Sbjct: 192 LVRAGYSEAGLAYFSGMGRSKVEYDSYAYAIALKASADSGALNHGRSIHTQ-TLKKGFDE 250

Query: 87  TTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMA 146
            +F++N L +MY KC                               G + +  + F  M 
Sbjct: 251 NSFVANSLTTMYNKC-------------------------------GKLDYGLHTFRKMR 279

Query: 147 ERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQ 206
             DVVSW T++  Y + G  + GL+ +K +R  ++  NE++F+ +++ C     LK   Q
Sbjct: 280 TLDVVSWTTIVTAYIQMGKEDCGLQAFKRMRASNVIPNEYTFSAVISCCANFARLKWGEQ 339

Query: 207 VHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGD 266
           +H  VL  GF++ + +++SI+  Y+KCGEL+                             
Sbjct: 340 LHAHVLCVGFVNALSVANSIMTLYSKCGELA----------------------------- 370

Query: 267 MESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCA 326
             S SK+F  M  ++ ++W+T+IA Y++ G G++A E  +RM     +PN+   +S L  
Sbjct: 371 --SVSKVFCSMKFRDIITWSTIIAAYSQVGYGEEAFEYLSRMRSEGPKPNEFALASVLSV 428

Query: 327 CASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSML 386
           C S+  L+ GKQ+H  ++       ++V S+LI MY+KCG + +  ++F +   K++ + 
Sbjct: 429 CGSMAILEQGKQLHAHVLSVGLEQTSMVCSALIIMYAKCGSIAEASKIF-MDSWKDDIIS 487

Query: 387 WNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMT 446
           W  MIS   +HG+ ++AI LF ++ +  ++PD +T   +L AC+H+G+V  G  YF SM+
Sbjct: 488 WTAMISGYAEHGHSQEAIELFENIQKVGLRPDSVTFIGVLTACSHAGMVDLGFYYFNSMS 547

Query: 447 HDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMG 506
            D  I P++EH+ C+I+LL +AG        +  MP + D  +W+ L   CRIHG++D G
Sbjct: 548 KDYHITPSKEHYGCMIDLLCRAGRLHDAETLIRSMPIQWDDVVWSTLLRACRIHGDVDCG 607

Query: 507 RKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENK 566
           ++   +++  +P  + TH  L++I++A GK +    +R L+  +   KE   S +++++ 
Sbjct: 608 QRAAAEVLKLDPNCAGTHITLANIFAAKGKWKEAANIRMLMKSKGVVKEPGWSSVKVKDS 667

Query: 567 VHAFSVSDSLHPMRDVLYSVLEQLAGQM 594
           V AF   D  HP  + +Y++LE+LA  M
Sbjct: 668 VFAFVSGDRSHPQGEDIYNILEELASGM 695



 Score =  152 bits (383), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 104/417 (24%), Positives = 190/417 (45%), Gaps = 38/417 (9%)

Query: 116 VKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKV 175
           V ++F  + +L  Y  +G +  +  +FD M  R+ V+W  +I G  ++G  E GL ++  
Sbjct: 148 VNSVFVGSALLDMYMKIGEIGRSCKVFDEMPTRNAVTWTAVITGLVRAGYSEAGLAYFSG 207

Query: 176 LRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGE 235
           + R  +  + +++A  L        L   R +H Q L  GF  N  +++S+   Y KCG+
Sbjct: 208 MGRSKVEYDSYAYAIALKASADSGALNHGRSIHTQTLKKGFDENSFVANSLTTMYNKCGK 267

Query: 236 LSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRN 295
           L      F +    DV++WTT+V+ Y ++G  +                           
Sbjct: 268 LDYGLHTFRKMRTLDVVSWTTIVTAYIQMGKEDC-------------------------- 301

Query: 296 GLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVM 355
                 L+ F RM    + PN++TFS+ +  CA+   LK G+Q+H  ++   F +   V 
Sbjct: 302 -----GLQAFKRMRASNVIPNEYTFSAVISCCANFARLKWGEQLHAHVLCVGFVNALSVA 356

Query: 356 SSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSV 415
           +S++ +YSKCG L    +VF  +    + + W+T+I+A +Q GY E+A      M     
Sbjct: 357 NSIMTLYSKCGELASVSKVF-CSMKFRDIITWSTIIAAYSQVGYGEEAFEYLSRMRSEGP 415

Query: 416 KPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGC-SDQL 474
           KP++  LA +L+ C    ++++G    +   H L +   Q    C   ++  A C S   
Sbjct: 416 KPNEFALASVLSVCGSMAILEQGK---QLHAHVLSVGLEQTSMVCSALIIMYAKCGSIAE 472

Query: 475 MNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVD--QLIDQNPQSSATHGLLSS 529
            +++    ++ D   W A+      HG+     ++ +  Q +   P S    G+L++
Sbjct: 473 ASKIFMDSWKDDIISWTAMISGYAEHGHSQEAIELFENIQKVGLRPDSVTFIGVLTA 529



 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 86/323 (26%), Positives = 156/323 (48%), Gaps = 35/323 (10%)

Query: 118 NLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLR 177
           +L   NN L        +K AR+LFD + +RD VSW  +I GY  S    E L+ +  +R
Sbjct: 48  DLAEANNQLKILVKTNHLKDARDLFDQLPQRDEVSWTNIISGYVNSSDSSEALRLFSKMR 107

Query: 178 -RFSISCNEFSFA-GILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGE 235
            +  +  + F  + G+ T  + L  L  T  +HG  +  G +++V + S+++D Y K GE
Sbjct: 108 LQSELRIDPFLLSLGLKTCGLGLNYLYGT-NLHGFSVKXGLVNSVFVGSALLDMYMKIGE 166

Query: 236 LSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRN 295
           +  + ++FDE   R+ +TWT +++G  +                          AGY+  
Sbjct: 167 IGRSCKVFDEMPTRNAVTWTAVITGLVR--------------------------AGYSEA 200

Query: 296 GLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVM 355
           GL       F+ M   ++  + + ++  L A A   +L HG+ +H   ++  F  N+ V 
Sbjct: 201 GLA-----YFSGMGRSKVEYDSYAYAIALKASADSGALNHGRSIHTQTLKKGFDENSFVA 255

Query: 356 SSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSV 415
           +SL  MY+KCG L+ G   F      +  + W T+++A  Q G ++  ++ F  M  S+V
Sbjct: 256 NSLTTMYNKCGKLDYGLHTFRKMRTLD-VVSWTTIVTAYIQMGKEDCGLQAFKRMRASNV 314

Query: 416 KPDKITLAVILNACTHSGLVQEG 438
            P++ T + +++ C +   ++ G
Sbjct: 315 IPNEYTFSAVISCCANFARLKWG 337


>gi|328774763|gb|AEB39781.1| pentatricopeptide repeat protein 79 [Funaria hygrometrica]
          Length = 820

 Score =  310 bits (795), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 186/654 (28%), Positives = 314/654 (48%), Gaps = 106/654 (16%)

Query: 11  NRKNLPNNCLIQSFLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKL 70
           N+  +  N +I  +     +G   EA +   L+ Q G+     T   IL  C+   +L  
Sbjct: 107 NKSVVSWNVMISGY---AHRGLGQEAFNLFTLMQQEGLEPDKFTFVSILSACSSPAALNW 163

Query: 71  GKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYA 130
           G+ VH+ +         T + N LISMY KC                             
Sbjct: 164 GREVHVRVMEAGLANNAT-VGNALISMYAKC----------------------------- 193

Query: 131 NLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAG 190
             G ++ AR +FD MA RD VSW T+   YA+SG  +E LK Y  + +  +  +  ++  
Sbjct: 194 --GSVRDARRVFDAMASRDEVSWTTLTGAYAESGYAQESLKTYHAMLQEGVRPSRITYMN 251

Query: 191 ILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKC----------------- 233
           +L+ C  L  L+  +Q+H Q++ +   S+V +S+++   Y KC                 
Sbjct: 252 VLSACGSLAALEKGKQIHAQIVESEHHSDVRVSTALTKMYIKCGAVKDAREVFECLPNRD 311

Query: 234 --------------GELSDAR----RLFDETDARDVLTWTTMVSG--------------- 260
                         G+L +A     R+  E  A D +T+  ++S                
Sbjct: 312 VIAWNTMIGGLVDSGQLEEAHGMFHRMLKECVAPDRVTYLAILSACARPGGLACGKEIHA 371

Query: 261 --------------------YAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQK 300
                               Y+K G M+ A ++F+ MP+++ VSWT L+ GY   G   +
Sbjct: 372 RAVKDGLVSDVRFGNALINMYSKAGSMKDARQVFDRMPKRDVVSWTALVGGYADCGQVVE 431

Query: 301 ALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLID 360
           +   F +M+   +  N+ T+   L AC++ V+LK GK++H  +++    ++  V ++L+ 
Sbjct: 432 SFSTFKKMLQQGVEANKITYMCVLKACSNPVALKWGKEIHAEVVKAGIFADLAVANALMS 491

Query: 361 MYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKI 420
           MY KCG + D  +V +    + + + WNT+I  L Q+G   +A++ F  M    ++P+  
Sbjct: 492 MYFKCGSVEDAIRVSEGMSTR-DVVTWNTLIGGLAQNGRGLEALQKFEVMKSEEMRPNAT 550

Query: 421 TLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEK 480
           T   +++AC    LV+EG   F SM  D GI+P ++H+AC++++LA+AG   +  + +  
Sbjct: 551 TFVNVMSACRVRNLVEEGRRQFASMRKDYGIVPTEKHYACMVDILARAGHLGEAEDVILT 610

Query: 481 MPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLV 540
           MP++  + +W AL   CR HGN+++G +  +Q +   PQ++ T+  LS IY+A G  R V
Sbjct: 611 MPFKPSAAMWGALLAACRAHGNVEIGEQAAEQCLKLEPQNAGTYVSLSFIYAAAGMWRDV 670

Query: 541 EKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQM 594
            K+R+L+ ER  KKE   SWIE+  +VH+F   D  HP  + +YS LE L  Q+
Sbjct: 671 AKLRKLMKERGVKKEPGRSWIEVAGEVHSFVAGDQSHPRTEEIYSELEALTKQI 724



 Score =  233 bits (594), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 142/470 (30%), Positives = 233/470 (49%), Gaps = 71/470 (15%)

Query: 40  LDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYF 99
           L  L Q+G ++ +     +LQ C ++K L +GK+VH H+ L     P  ++ N L+ +Y 
Sbjct: 32  LQYLHQKGSQVDSYDYVKLLQSCVKAKDLAVGKQVHEHI-LRFGMKPNVYIINTLLKLYV 90

Query: 100 KCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIG 159
            CGS  +AR++FDK   K++ S+N M+SGYA+ G+ + A NLF  M              
Sbjct: 91  HCGSVNEARRLFDKFSNKSVVSWNVMISGYAHRGLGQEAFNLFTLMQ------------- 137

Query: 160 YAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSN 219
                  +EGL+            ++F+F  IL+ C     L   R+VH +V+  G  +N
Sbjct: 138 -------QEGLE-----------PDKFTFVSILSACSSPAALNWGREVHVRVMEAGLANN 179

Query: 220 VVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPE 279
             + ++++  YAKCG + DARR+FD   +RD ++WTT+   YA+                
Sbjct: 180 ATVGNALISMYAKCGSVRDARRVFDAMASRDEVSWTTLTGAYAE---------------- 223

Query: 280 KNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQV 339
                          +G  Q++L+ +  M+   +RP++ T+ + L AC S+ +L+ GKQ+
Sbjct: 224 ---------------SGYAQESLKTYHAMLQEGVRPSRITYMNVLSACGSLAALEKGKQI 268

Query: 340 HGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGY 399
           H  ++ +   S+  V ++L  MY KCG + D R+VF+   N+ + + WNTMI  L   G 
Sbjct: 269 HAQIVESEHHSDVRVSTALTKMYIKCGAVKDAREVFECLPNR-DVIAWNTMIGGLVDSGQ 327

Query: 400 DEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHA 459
            E+A  +FH M++  V PD++T   IL+AC   G +  G         D G++ +     
Sbjct: 328 LEEAHGMFHRMLKECVAPDRVTYLAILSACARPGGLACGKEIHARAVKD-GLVSDVRFGN 386

Query: 460 CLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKV 509
            LI + ++AG         ++MP + D   W AL G     G  D G+ V
Sbjct: 387 ALINMYSKAGSMKDARQVFDRMP-KRDVVSWTALVG-----GYADCGQVV 430


>gi|125527494|gb|EAY75608.1| hypothetical protein OsI_03512 [Oryza sativa Indica Group]
          Length = 608

 Score =  310 bits (795), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 174/572 (30%), Positives = 300/572 (52%), Gaps = 37/572 (6%)

Query: 20  LIQSFLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLK 79
           LI +   L S  +L +A SSL    +RG  +P   +  +++ CA   + + GK+VH H  
Sbjct: 56  LISALSRLCSHQELLDAFSSLH---RRGSDVPPGCVPLVVKSCAILAASRQGKQVHCH-A 111

Query: 80  LTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHAR 139
           + +      F+   L+  Y K G    A KVFD++PVK+    N +++GY+  G +  AR
Sbjct: 112 IVRGLLGDIFVQTALVDFYAKNGDMDCAVKVFDEMPVKDPIPMNCLITGYSKSGDVVKAR 171

Query: 140 NLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLE 199
            LFD M  R   SWN+MI  YA  G  +E L+ ++ +       N  + A + +IC K  
Sbjct: 172 RLFDGMVRRTSASWNSMIACYAHGGEYQEALRLFRRMLSEGARPNAITIATMFSICAKTG 231

Query: 200 ELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVS 259
           +L+  +                                 AR L  E D ++++  T ++ 
Sbjct: 232 DLETGKW--------------------------------ARSLIAEQDLQNMIVHTALME 259

Query: 260 GYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHT 319
            Y K   ++ A + F+ M +++ V+W+T+IAGY +NG   ++LELF RM     +PN+ T
Sbjct: 260 MYVKCQAIDEARREFDRMQQRDVVAWSTMIAGYAQNGRPHESLELFERMKATSCKPNEVT 319

Query: 320 FSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTD 379
               L ACA + S + G Q+   +   N    + + S+LIDMY+KCG +   R VF+  +
Sbjct: 320 LVGVLSACAQLGSDELGGQIGSHVESQNLPLTSYLGSALIDMYTKCGHVGRARSVFNRME 379

Query: 380 NKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGL 439
           +K   + WN+M+  L  +G+ + AI L+ +M    V+P++IT   +L ACTH+GLV +G+
Sbjct: 380 HKV-VITWNSMMRGLALNGFAQDAITLYKEMTEEDVQPNEITFVALLTACTHAGLVDQGM 438

Query: 440 TYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRI 499
           ++F+ M     + P  EH AC+++LL ++G   +    +  M  E ++ +W+ L   CR 
Sbjct: 439 SFFKEMKTIHHVSPQVEHCACIVDLLCKSGRLREAYKFICDMEVEPNAVIWSTLLSACRA 498

Query: 500 HGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAIS 559
           H ++++ +    +L+   P +S+ + LLS+IY+  G    V ++R L+  +  +K  A S
Sbjct: 499 HADVELAKLAASKLLVLEPDNSSIYVLLSNIYADAGLWGDVREIRDLMRSKNVQKLSAYS 558

Query: 560 WIEIENKVHAFSVSDSLHPMRDVLYSVLEQLA 591
           WIE++ +VH F V D+ HP    +++V++ + 
Sbjct: 559 WIELDGEVHKFLVQDTYHPKSAEIFNVVDGMG 590



 Score =  166 bits (419), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 90/298 (30%), Positives = 157/298 (52%), Gaps = 2/298 (0%)

Query: 136 KHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTIC 195
           + AR+LFD +         T+I   ++  + +E L  +  L R            ++  C
Sbjct: 36  RAARHLFDAVPRPTPALCGTLISALSRLCSHQELLDAFSSLHRRGSDVPPGCVPLVVKSC 95

Query: 196 VKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWT 255
             L   +  +QVH   +V G L ++ + +++VD YAK G++  A ++FDE   +D +   
Sbjct: 96  AILAASRQGKQVHCHAIVRGLLGDIFVQTALVDFYAKNGDMDCAVKVFDEMPVKDPIPMN 155

Query: 256 TMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRP 315
            +++GY+K GD+  A +LF+ M  +   SW ++IA Y   G  Q+AL LF RM+    RP
Sbjct: 156 CLITGYSKSGDVVKARRLFDGMVRRTSASWNSMIACYAHGGEYQEALRLFRRMLSEGARP 215

Query: 316 NQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVF 375
           N  T ++    CA    L+ GK     +   + + N IV ++L++MY KC  +++ R+ F
Sbjct: 216 NAITIATMFSICAKTGDLETGKWARSLIAEQDLQ-NMIVHTALMEMYVKCQAIDEARREF 274

Query: 376 DLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSG 433
           D    + + + W+TMI+   Q+G   +++ LF  M  +S KP+++TL  +L+AC   G
Sbjct: 275 DRMQQR-DVVAWSTMIAGYAQNGRPHESLELFERMKATSCKPNEVTLVGVLSACAQLG 331



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 93/360 (25%), Positives = 168/360 (46%), Gaps = 27/360 (7%)

Query: 12  RKNLPNNCLIQSFLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLG 71
           +  +P NCLI  +      G + +A    D + +R        +A         ++L+L 
Sbjct: 149 KDPIPMNCLITGY---SKSGDVVKARRLFDGMVRRTSASWNSMIACYAHGGEYQEALRLF 205

Query: 72  KRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVD----ARKVFDKIPVKNLFSYNNMLS 127
           +R+     L++   P       + S+  K G D++    AR +  +  ++N+  +  ++ 
Sbjct: 206 RRM-----LSEGARPNAITIATMFSICAKTG-DLETGKWARSLIAEQDLQNMIVHTALME 259

Query: 128 GYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFS 187
            Y     +  AR  FD M +RDVV+W+TMI GYA++G   E L+ ++ ++  S   NE +
Sbjct: 260 MYVKCQAIDEARREFDRMQQRDVVAWSTMIAGYAQNGRPHESLELFERMKATSCKPNEVT 319

Query: 188 FAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETD 247
             G+L+ C +L   +L  Q+   V          + S+++D Y KCG +  AR +F+  +
Sbjct: 320 LVGVLSACAQLGSDELGGQIGSHVESQNLPLTSYLGSALIDMYTKCGHVGRARSVFNRME 379

Query: 248 ARDVLTWTTMVSGYAKLGDMESASKLFNEMPEK----NPVSWTTLIAGYTRNGLGQKALE 303
            + V+TW +M+ G A  G  + A  L+ EM E+    N +++  L+   T  GL  + + 
Sbjct: 380 HKVVITWNSMMRGLALNGFAQDAITLYKEMTEEDVQPNEITFVALLTACTHAGLVDQGMS 439

Query: 304 LFTRMMILRIRPNQHTFSSCLCACASIVSL--KHG--KQVHGFLIRTNFRSNTIVMSSLI 359
            F  M  +      H  S  +  CA IV L  K G  ++ + F+       N ++ S+L+
Sbjct: 440 FFKEMKTI------HHVSPQVEHCACIVDLLCKSGRLREAYKFICDMEVEPNAVIWSTLL 493



 Score = 75.1 bits (183), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 60/259 (23%), Positives = 111/259 (42%), Gaps = 41/259 (15%)

Query: 269 SASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLC--- 325
           +A  LF+ +P   P    TLI+  +R    Q+ L+ F+ +     R        C+    
Sbjct: 37  AARHLFDAVPRPTPALCGTLISALSRLCSHQELLDAFSSLH----RRGSDVPPGCVPLVV 92

Query: 326 -ACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFD-------- 376
            +CA + + + GKQVH   I      +  V ++L+D Y+K G ++   +VFD        
Sbjct: 93  KSCAILAASRQGKQVHCHAIVRGLLGDIFVQTALVDFYAKNGDMDCAVKVFDEMPVKDPI 152

Query: 377 --------------------LTDN--KENSMLWNTMISALTQHGYDEQAIRLFHDMVRSS 414
                               L D   +  S  WN+MI+     G  ++A+RLF  M+   
Sbjct: 153 PMNCLITGYSKSGDVVKARRLFDGMVRRTSASWNSMIACYAHGGEYQEALRLFRRMLSEG 212

Query: 415 VKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQL 474
            +P+ IT+A + + C  +G ++ G  +  S+  +   + N   H  L+E+  +    D+ 
Sbjct: 213 ARPNAITIATMFSICAKTGDLETG-KWARSLIAEQD-LQNMIVHTALMEMYVKCQAIDEA 270

Query: 475 MNQLEKMPYEHDSYLWNAL 493
             + ++M  + D   W+ +
Sbjct: 271 RREFDRM-QQRDVVAWSTM 288


>gi|359492783|ref|XP_002278486.2| PREDICTED: pentatricopeptide repeat-containing protein At3g21470
           [Vitis vinifera]
          Length = 575

 Score =  310 bits (795), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 186/571 (32%), Positives = 296/571 (51%), Gaps = 50/571 (8%)

Query: 3   SNFSPRGINRKNLPNNC-LIQSFLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQ 61
           S+F P G    +L N C LI+S+LS   +G   EA+     L ++G+ L       +L+ 
Sbjct: 49  SDFCP-GKGTPSLSNWCHLIRSYLS---QGAPREALLVYTGLRRKGVYLLG-VAPLVLKA 103

Query: 62  CAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFS 121
           CA    +K GK +H    +         +   L+ MY KCG+ VD+RKVFD +P +N  +
Sbjct: 104 CASLSIVKHGKALHAE-SIKNGVDFDVMIGTSLVCMYAKCGNVVDSRKVFDYMPERNAVT 162

Query: 122 YNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSI 181
           +N M+ GY   G  K A  LF+ M+ R  V+W  MI G+A+SG  E   +F+        
Sbjct: 163 WNAMICGYLGNGDSKSAVLLFEKMSIRTAVTWIEMIDGFARSGDTETARRFFDD------ 216

Query: 182 SCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARR 241
                                          V   L NVV  + +VD YA+  E+  AR 
Sbjct: 217 -------------------------------VPSELRNVVTWTVMVDGYARNAEMEAARE 245

Query: 242 LFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKA 301
           +F+    R+   W++M+SGY K G+++ A  +F+ +P +N V+W +LI+GY +NG  ++A
Sbjct: 246 VFEGMPQRNFFAWSSMISGYCKKGNVKEARSIFDRIPVRNLVNWNSLISGYAQNGFSEEA 305

Query: 302 LELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDM 361
           LE F +M      P++ T +S L AC+ +  L  GK++H  +     + N  V++ L+DM
Sbjct: 306 LEAFGKMQAEGFEPDEVTIASVLSACSQLGLLDAGKKIHHMMNHKGIKLNQFVLNGLVDM 365

Query: 362 YSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKIT 421
           Y+KCG L + R +F+   ++ N   WN+MIS    HG  ++A+  F  M  S   PD+IT
Sbjct: 366 YAKCGDLANARLIFEGMAHR-NRACWNSMISGFAIHGQSKEALEFFGRMEDSHEGPDEIT 424

Query: 422 LAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKM 481
              +L+AC H G V  GL  F  M    G+    +H+ CLI+LL +AG   +  + +++M
Sbjct: 425 FLSVLSACAHGGFVNAGLEIFSRM-EKYGLTTGIKHYGCLIDLLGRAGRIKEAYDLIKRM 483

Query: 482 PYEHDSYLWNALHGVCRIHGNIDMGRKVVDQL--IDQNPQSS--ATHGLLSSIYSALGKG 537
           P + +  +W AL G CR+H +++M  +VV+++  +D N  S   + + LLS+IY+A  + 
Sbjct: 484 PVKPNDVVWGALLGACRVHLDMEMADRVVEEIVKVDSNISSGCDSHYVLLSNIYAASDRW 543

Query: 538 RLVEKVRQLINERQFKKEQAISWIEIENKVH 568
              EK+R  +  + F+K    S I   N  H
Sbjct: 544 EKAEKMRMEMANKGFQKTSGCSSIMPGNNTH 574


>gi|347954516|gb|AEP33758.1| organelle transcript processing 82, partial [Barbarea verna]
          Length = 710

 Score =  310 bits (795), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 179/557 (32%), Positives = 295/557 (52%), Gaps = 40/557 (7%)

Query: 34  SEAISSLDL---LAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLH-LKLTQRKTPTTF 89
           S+ +S++ L   +   G+   + T  F+L+ CA+ K  K G+++H H LKL        +
Sbjct: 82  SDPVSAIKLYVCMISLGLLPNSYTFPFLLKSCAKLKVSKEGQQIHGHVLKLGYELD--LY 139

Query: 90  LSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERD 149
           +   LISMY K G   DA KVFD    +++ SY  +++GYA+ G ++ A+ +FD +  +D
Sbjct: 140 VHTSLISMYVKNGRWKDAHKVFDGSSHRDVVSYTALITGYASRGYIESAQKMFDEIPVKD 199

Query: 150 VVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHG 209
           VVSWN +I GYA +G  +E L  +K + + ++  +E +   +++ C +   ++L RQVH 
Sbjct: 200 VVSWNAIISGYADTGNNKEALDLFKEMMKTNVKPDESTMVTVVSACAQSGSIQLGRQVHS 259

Query: 210 QVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMES 269
            +   G  SN+ I ++++D Y+KCGE+                               E+
Sbjct: 260 WIDDHGLGSNLKIVNALIDLYSKCGEV-------------------------------ET 288

Query: 270 ASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACAS 329
           A  LF  +  K+ +SW T+I GYT   L ++AL LF  M+     PN  T  S L ACA 
Sbjct: 289 ACGLFQGLSNKDVISWNTMIGGYTHLNLYKEALLLFQEMLRSGENPNDVTMLSILPACAQ 348

Query: 330 IVSLKHGKQVHGFLIR--TNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLW 387
           + ++  G+ +H ++ +      + + + +SLIDMY+KCG +    QVF+   ++  S   
Sbjct: 349 LGAIDFGRWIHVYIDKRIKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSMHHRTLSAC- 407

Query: 388 NTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTH 447
           N MI     HG    A  +F  M ++ ++PD IT   +L+AC+HSG++  G   F SMT 
Sbjct: 408 NAMIFGFAMHGRANAAFDIFSRMRKNGIEPDDITFVGLLSACSHSGMLDLGRRIFRSMTQ 467

Query: 448 DLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGR 507
           +  I P  EH+ C+I+LL   G   +    +  M  E D  +W +L   C++HGN+++G 
Sbjct: 468 NYKITPKLEHYGCMIDLLGHLGLFKEAEEMINTMTMEPDGVIWCSLLKACKMHGNVELGE 527

Query: 508 KVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKV 567
               +LI   P++  ++ LLS+IY+  G+   V  +R L+N++  KK    S IEI++ V
Sbjct: 528 SFAQKLIKIEPENPGSYVLLSNIYATAGRWNEVANIRALLNDKGMKKVPGCSSIEIDSVV 587

Query: 568 HAFSVSDSLHPMRDVLY 584
           H F + D  HP    +Y
Sbjct: 588 HEFIIGDKFHPRNREIY 604



 Score =  212 bits (540), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 133/463 (28%), Positives = 232/463 (50%), Gaps = 37/463 (7%)

Query: 131 NLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAG 190
           N   + +A ++F+ + E +++ WNTM  G+A S      +K Y  +    +  N ++F  
Sbjct: 49  NFDGLPYAISVFETIQEPNLLIWNTMFRGHALSSDPVSAIKLYVCMISLGLLPNSYTFPF 108

Query: 191 ILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARD 250
           +L  C KL+  K  +Q+HG VL  G+  ++ + +S++  Y K G   DA ++FD +  RD
Sbjct: 109 LLKSCAKLKVSKEGQQIHGHVLKLGYELDLYVHTSLISMYVKNGRWKDAHKVFDGSSHRD 168

Query: 251 VLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMI 310
           V+++T +++GYA  G +ESA K+F+E+P K+ VSW  +I+GY   G  ++AL+LF  MM 
Sbjct: 169 VVSYTALITGYASRGYIESAQKMFDEIPVKDVVSWNAIISGYADTGNNKEALDLFKEMMK 228

Query: 311 LRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLND 370
             ++P++ T  + + ACA   S++ G+QVH ++      SN  ++++LID+YSKCG +  
Sbjct: 229 TNVKPDESTMVTVVSACAQSGSIQLGRQVHSWIDDHGLGSNLKIVNALIDLYSKCGEVET 288

Query: 371 GRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACT 430
              +F    NK+  + WNTMI   T     ++A+ LF +M+RS   P+ +T+  IL AC 
Sbjct: 289 ACGLFQGLSNKD-VISWNTMIGGYTHLNLYKEALLLFQEMLRSGENPNDVTMLSILPACA 347

Query: 431 HSGLVQ-------------EGLTYFESMTHDL-------GIIP------NQEHHACL--- 461
             G +              +G+T   S+   L       G I       N  HH  L   
Sbjct: 348 QLGAIDFGRWIHVYIDKRIKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSMHHRTLSAC 407

Query: 462 ------IELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLID 515
                   +  +A  +  + +++ K   E D   +  L   C   G +D+GR++   +  
Sbjct: 408 NAMIFGFAMHGRANAAFDIFSRMRKNGIEPDDITFVGLLSACSHSGMLDLGRRIFRSMT- 466

Query: 516 QNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAI 558
           QN + +        +   LG   L ++  ++IN    + +  I
Sbjct: 467 QNYKITPKLEHYGCMIDLLGHLGLFKEAEEMINTMTMEPDGVI 509



 Score = 92.4 bits (228), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 82/401 (20%), Positives = 163/401 (40%), Gaps = 70/401 (17%)

Query: 31  GQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFL 90
           G   EA+     + +  ++    T+  ++  CA+S S++LG++VH  +           +
Sbjct: 214 GNNKEALDLFKEMMKTNVKPDESTMVTVVSACAQSGSIQLGRQVHSWID-DHGLGSNLKI 272

Query: 91  SNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDV 150
            N LI +Y KCG    A  +F  +  K++ S+N M+ GY +L + K A  LF  M     
Sbjct: 273 VNALIDLYSKCGEVETACGLFQGLSNKDVISWNTMIGGYTHLNLYKEALLLFQEM----- 327

Query: 151 VSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQ 210
                      +SG                 + N+ +   IL  C +L  +   R +H  
Sbjct: 328 ----------LRSGE----------------NPNDVTMLSILPACAQLGAIDFGRWIHVY 361

Query: 211 V--LVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDME 268
           +   + G  +   + +S++D YAKCG++  A ++F+    R +     M+ G+A      
Sbjct: 362 IDKRIKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSMHHRTLSACNAMIFGFA------ 415

Query: 269 SASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACA 328
                                     +G    A ++F+RM    I P+  TF   L AC+
Sbjct: 416 -------------------------MHGRANAAFDIFSRMRKNGIEPDDITFVGLLSACS 450

Query: 329 SIVSLKHGKQVHGFLIRTNFRSNTIV--MSSLIDMYSKCGCLNDGRQVFDLTDNKENSML 386
               L  G+++   + + N++    +     +ID+    G   +  ++ +    + + ++
Sbjct: 451 HSGMLDLGRRIFRSMTQ-NYKITPKLEHYGCMIDLLGHLGLFKEAEEMINTMTMEPDGVI 509

Query: 387 WNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILN 427
           W +++ A   HG  E        +++  ++P+     V+L+
Sbjct: 510 WCSLLKACKMHGNVELGESFAQKLIK--IEPENPGSYVLLS 548


>gi|225435834|ref|XP_002283791.1| PREDICTED: pentatricopeptide repeat-containing protein At5g56310
           [Vitis vinifera]
          Length = 576

 Score =  310 bits (795), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 160/501 (31%), Positives = 280/501 (55%), Gaps = 5/501 (0%)

Query: 91  SNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGY----ANLGMMKHARNLFDNMA 146
           S HL+S+  +C +     +    +  + L   N +LS +    ++LG   ++ ++F +  
Sbjct: 41  SYHLLSLLKQCSNLKHLHQTHCFMLSRGLDQDNILLSRFIEACSSLGFSHYSHSIFTHKT 100

Query: 147 ERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQ 206
             D+  +NT+I   +      E +  Y  +    +  + +S   +L   V+L  + + RQ
Sbjct: 101 RPDIYLYNTIIKALSNPELATEAILLYNRILASDLRFDTYSLPFVLKAVVRLLAIHVGRQ 160

Query: 207 VHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGD 266
           +H Q + TG +S++ + ++++  Y+ CG +S+AR+LFD    RDV  W  MV+GYAK+GD
Sbjct: 161 IHCQAIGTGLVSDIHVVTALIQMYSSCGCVSEARQLFDGVCFRDVAFWNAMVAGYAKVGD 220

Query: 267 MESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCA 326
           +++A  LF  MPE+N +SWT +IAGY +     +A+ +F RM +  + P++    + L A
Sbjct: 221 VDNARHLFERMPERNVISWTAVIAGYAQMDRPNEAITMFRRMQLEEVEPDEIAMLAALSA 280

Query: 327 CASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSML 386
           CA + +L+ G+ +H ++ +        + ++LIDMY+KCG +    +VF   ++K + + 
Sbjct: 281 CAHLGALELGEWIHNYIDKHGLSKIVPLNNALIDMYAKCGKIEKALEVFKNMEHK-SVIT 339

Query: 387 WNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMT 446
           W +MI  L  HG   +A+ +F  M R+ +KP++IT   IL+AC H GLV+ G  YF+ M 
Sbjct: 340 WTSMIDGLALHGLGREALEMFSCMERNRIKPNEITFVAILSACCHVGLVEMGRWYFKCMG 399

Query: 447 HDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMG 506
              GI P  +H+ C+I+LL +AG   +    +  MP+E ++ +W +L    RIHG+ ++G
Sbjct: 400 TKYGIKPKIQHYGCMIDLLGRAGFLQEAQELVRGMPFEANAPIWGSLLAAARIHGDAELG 459

Query: 507 RKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENK 566
           ++ +  LI   P +S  + LLS+IY+   K      VR+++ +   KK    S IE+ N+
Sbjct: 460 KQALQHLIKVEPHNSGNYTLLSNIYATQSKWNEAGMVRKVMRDTGVKKMPGGSCIEVNNR 519

Query: 567 VHAFSVSDSLHPMRDVLYSVL 587
           VH F   D LHP  + ++ VL
Sbjct: 520 VHEFVAGDKLHPQSERIFEVL 540



 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 102/417 (24%), Positives = 204/417 (48%), Gaps = 36/417 (8%)

Query: 3   SNFSPRGINRKNLPNNCLIQSFLSLISKGQL-SEAISSLDLLAQRGIRLPAETLAFILQQ 61
           S++S      K  P+  L  + +  +S  +L +EAI   + +    +R    +L F+L+ 
Sbjct: 89  SHYSHSIFTHKTRPDIYLYNTIIKALSNPELATEAILLYNRILASDLRFDTYSLPFVLKA 148

Query: 62  CAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFS 121
                ++ +G+++H     T   +    ++  LI MY  CG   +AR++FD +  +++  
Sbjct: 149 VVRLLAIHVGRQIHCQAIGTGLVSDIHVVTA-LIQMYSSCGCVSEARQLFDGVCFRDVAF 207

Query: 122 YNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSI 181
           +N M++GYA +G + +AR+LF+ M ER+V+SW  +I GYA+     E +  ++ ++   +
Sbjct: 208 WNAMVAGYAKVGDVDNARHLFERMPERNVISWTAVIAGYAQMDRPNEAITMFRRMQLEEV 267

Query: 182 SCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARR 241
             +E +    L+ C  L  L+L   +H  +   G    V ++++++D YAKCG++  A  
Sbjct: 268 EPDEIAMLAALSACAHLGALELGEWIHNYIDKHGLSKIVPLNNALIDMYAKCGKIEKALE 327

Query: 242 LFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKA 301
           +F   + + V+TWT+M+ G A                                +GLG++A
Sbjct: 328 VFKNMEHKSVITWTSMIDGLA-------------------------------LHGLGREA 356

Query: 302 LELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFL-IRTNFRSNTIVMSSLID 360
           LE+F+ M   RI+PN+ TF + L AC  +  ++ G+     +  +   +        +ID
Sbjct: 357 LEMFSCMERNRIKPNEITFVAILSACCHVGLVEMGRWYFKCMGTKYGIKPKIQHYGCMID 416

Query: 361 MYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKP 417
           +  + G L + +++      + N+ +W ++++A   HG  E   +    +++  V+P
Sbjct: 417 LLGRAGFLQEAQELVRGMPFEANAPIWGSLLAAARIHGDAELGKQALQHLIK--VEP 471


>gi|78183583|dbj|BAD67156.2| PpPPR_77 [Physcomitrella patens]
          Length = 1106

 Score =  310 bits (795), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 188/649 (28%), Positives = 315/649 (48%), Gaps = 106/649 (16%)

Query: 18   NCLIQSFLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLH 77
            N +I  +     +G   EA+     +   G++    T   +L  CA S +   GK +H  
Sbjct: 400  NAIIAGYARREDRG---EAMRLYKQMQSEGVKPGRVTFLHLLSACANSSAYADGKMIHED 456

Query: 78   LKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKH 137
            +  +  K+    L+N L++MY +CGS ++A+ VF+    +++ S+N+M++G+A  G  + 
Sbjct: 457  ILRSGIKS-NGHLANALMNMYRRCGSLMEAQNVFEGTQARDVISWNSMIAGHAQHGSYET 515

Query: 138  ARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVK 197
            A  LF  M   ++   N                                +FA +L+ C  
Sbjct: 516  AYKLFQEMQNEELEPDN-------------------------------ITFASVLSGCKN 544

Query: 198  LEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTM 257
             E L+L +Q+HG++  +G   +V + +++++ Y +CG L DAR +F     RDV++WT M
Sbjct: 545  PEALELGKQIHGRITESGLQLDVNLGNALINMYIRCGSLQDARNVFHSLQHRDVMSWTAM 604

Query: 258  VSGYAKLGDMESASKLFNEMPEKN--PVSWT----------------------------- 286
            + G A  G+   A +LF +M  +   PV  T                             
Sbjct: 605  IGGCADQGEDMKAIELFWQMQNEGFRPVKSTFSSILKVCTSSACLDEGKKVIAYILNSGY 664

Query: 287  --------TLIAGYTRNG-------------------------------LGQKALELFTR 307
                     LI+ Y+++G                               LGQ A+E   +
Sbjct: 665  ELDTGVGNALISAYSKSGSMTDAREVFDKMPSRDIVSWNKIIAGYAQNGLGQTAVEFAYQ 724

Query: 308  MMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGC 367
            M    + PN+ +F S L AC+S  +L+ GK+VH  +++   + +  V ++LI MY+KCG 
Sbjct: 725  MQEQDVVPNKFSFVSLLNACSSFSALEEGKRVHAEIVKRKLQGDVRVGAALISMYAKCGS 784

Query: 368  LNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILN 427
              + ++VFD    K N + WN MI+A  QHG   +A+  F+ M +  +KPD  T   IL+
Sbjct: 785  QGEAQEVFDNIIEK-NVVTWNAMINAYAQHGLASKALGFFNCMEKEGIKPDGSTFTSILS 843

Query: 428  ACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDS 487
            AC H+GLV EG   F SM  + G++P  EH+ CL+ LL +A    +    + +MP+  D+
Sbjct: 844  ACNHAGLVLEGYQIFSSMESEYGVLPTIEHYGCLVGLLGRARRFQEAETLINQMPFPPDA 903

Query: 488  YLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLI 547
             +W  L G CRIHGNI +     +  +  N ++ A + LLS++Y+A G+   V K+R+++
Sbjct: 904  AVWETLLGACRIHGNIALAEHAANNALKLNARNPAVYILLSNVYAAAGRWDDVAKIRRVM 963

Query: 548  NERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQMGE 596
              R  +KE   SWIE++N +H F  +D  HP    +Y+ L++L+ +M E
Sbjct: 964  EGRGIRKEPGRSWIEVDNIIHEFIAADRSHPETAEIYAELKRLSVEMEE 1012



 Score =  194 bits (494), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 143/526 (27%), Positives = 238/526 (45%), Gaps = 84/526 (15%)

Query: 26  SLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKT 85
           +L   G   EA      +   G+ L   T   IL  C+ SK+L+ GK +H H+      +
Sbjct: 304 ALAQHGHNVEAFEQYYRMRSDGVALNRTTYLSILNACSTSKALEAGKLIHSHISEDGHSS 363

Query: 86  PTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNM 145
               + N LISMY +CG                                +  AR LF  M
Sbjct: 364 DVQ-IGNALISMYARCGD-------------------------------LPKARELFYTM 391

Query: 146 AERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTR 205
            +RD++SWN +I GYA+     E ++ YK ++   +     +F  +L+ C         +
Sbjct: 392 PKRDLISWNAIIAGYARREDRGEAMRLYKQMQSEGVKPGRVTFLHLLSACANSSAYADGK 451

Query: 206 QVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLG 265
            +H  +L +G  SN  +++++++ Y +CG L +A+ +F+ T ARDV++W +M++G+A+ G
Sbjct: 452 MIHEDILRSGIKSNGHLANALMNMYRRCGSLMEAQNVFEGTQARDVISWNSMIAGHAQHG 511

Query: 266 DMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLC 325
             E+A KLF EM  +                                + P+  TF+S L 
Sbjct: 512 SYETAYKLFQEMQNE-------------------------------ELEPDNITFASVLS 540

Query: 326 ACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSM 385
            C +  +L+ GKQ+HG +  +  + +  + ++LI+MY +CG L D R VF    +++  M
Sbjct: 541 GCKNPEALELGKQIHGRITESGLQLDVNLGNALINMYIRCGSLQDARNVFHSLQHRD-VM 599

Query: 386 LWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEG---LTYF 442
            W  MI      G D +AI LF  M     +P K T + IL  CT S  + EG   + Y 
Sbjct: 600 SWTAMIGGCADQGEDMKAIELFWQMQNEGFRPVKSTFSSILKVCTSSACLDEGKKVIAYI 659

Query: 443 ESMTHDLGI-IPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHG 501
            +  ++L   + N      LI   +++G         +KMP   D   WN +      +G
Sbjct: 660 LNSGYELDTGVGN-----ALISAYSKSGSMTDAREVFDKMP-SRDIVSWNKIIAGYAQNG 713

Query: 502 NIDMGRKVVD---QLIDQN--PQSSATHGLLS--SIYSALGKGRLV 540
              +G+  V+   Q+ +Q+  P   +   LL+  S +SAL +G+ V
Sbjct: 714 ---LGQTAVEFAYQMQEQDVVPNKFSFVSLLNACSSFSALEEGKRV 756



 Score =  160 bits (406), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 135/543 (24%), Positives = 242/543 (44%), Gaps = 56/543 (10%)

Query: 54  TLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDK 113
           T   +LQ C   + L   KR+H  + +     P  FLSN LI+MY KC S +DA +VF +
Sbjct: 29  TYVALLQNCTRKRLLPEAKRIHAQM-VEAWVGPDIFLSNLLINMYVKCRSVLDAHQVFKE 87

Query: 114 IPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAER----DVVSWNTMIIGYAKSGAVEEG 169
           +P +++ S+N+++S YA  G  K A  LF+ M       + +++ +++        +E G
Sbjct: 88  MPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQNAGFIPNKITYISILTACYSPAELENG 147

Query: 170 LKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVH--------------------- 208
            K +  + +     +      +L++  K  +L   RQV                      
Sbjct: 148 KKIHSQIIKAGYQRDPRVQNSLLSMYGKCGDLPRARQVFAGISPRDVVSYNTMLGLYAQK 207

Query: 209 ----------GQVLVTGFLSNVVISSSIVDAYAKCGELSDARRL----FDETDARDVLTW 254
                     GQ+   G   + V   +++DA+     L + +R+     +E    D+   
Sbjct: 208 AYVKECLGLFGQMSSEGISPDKVTYINLLDAFTTPSMLDEGKRIHKLTVEEGLNSDIRVG 267

Query: 255 TTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIR 314
           T +V+   + GD++SA + F    +++ V +  LIA   ++G   +A E + RM    + 
Sbjct: 268 TALVTMCVRCGDVDSAKQAFKGTADRDVVVYNALIAALAQHGHNVEAFEQYYRMRSDGVA 327

Query: 315 PNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQV 374
            N+ T+ S L AC++  +L+ GK +H  +      S+  + ++LI MY++CG L   R++
Sbjct: 328 LNRTTYLSILNACSTSKALEAGKLIHSHISEDGHSSDVQIGNALISMYARCGDLPKAREL 387

Query: 375 FDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGL 434
           F  T  K + + WN +I+   +     +A+RL+  M    VKP ++T   +L+AC +S  
Sbjct: 388 F-YTMPKRDLISWNAIIAGYARREDRGEAMRLYKQMQSEGVKPGRVTFLHLLSACANSSA 446

Query: 435 VQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALH 494
             +G    E +    GI  N      L+ +  + G   +  N  E      D   WN++ 
Sbjct: 447 YADGKMIHEDILRS-GIKSNGHLANALMNMYRRCGSLMEAQNVFEGTQ-ARDVISWNSMI 504

Query: 495 GVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSA--------LGK---GRLVEKV 543
                HG+ +   K+  ++  QN +    +   +S+ S         LGK   GR+ E  
Sbjct: 505 AGHAQHGSYETAYKLFQEM--QNEELEPDNITFASVLSGCKNPEALELGKQIHGRITESG 562

Query: 544 RQL 546
            QL
Sbjct: 563 LQL 565



 Score =  160 bits (404), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 130/567 (22%), Positives = 239/567 (42%), Gaps = 101/567 (17%)

Query: 30  KGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTF 89
           K  + E +     ++  GI     T   +L        L  GKR+H  L + +       
Sbjct: 207 KAYVKECLGLFGQMSSEGISPDKVTYINLLDAFTTPSMLDEGKRIH-KLTVEEGLNSDIR 265

Query: 90  LSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERD 149
           +   L++M  +CG DVD+                              A+  F   A+RD
Sbjct: 266 VGTALVTMCVRCG-DVDS------------------------------AKQAFKGTADRD 294

Query: 150 VVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHG 209
           VV +N +I   A+ G   E  + Y  +R   ++ N  ++  IL  C   + L+  + +H 
Sbjct: 295 VVVYNALIAALAQHGHNVEAFEQYYRMRSDGVALNRTTYLSILNACSTSKALEAGKLIHS 354

Query: 210 QVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMES 269
            +   G  S+V I ++                               ++S YA+ GD+  
Sbjct: 355 HISEDGHSSDVQIGNA-------------------------------LISMYARCGDLPK 383

Query: 270 ASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACAS 329
           A +LF  MP+++ +SW  +IAGY R     +A+ L+ +M    ++P + TF   L ACA+
Sbjct: 384 ARELFYTMPKRDLISWNAIIAGYARREDRGEAMRLYKQMQSEGVKPGRVTFLHLLSACAN 443

Query: 330 IVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNT 389
             +   GK +H  ++R+  +SN  + ++L++MY +CG L + + VF+ T  ++  + WN+
Sbjct: 444 SSAYADGKMIHEDILRSGIKSNGHLANALMNMYRRCGSLMEAQNVFEGTQARD-VISWNS 502

Query: 390 MISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACT-----------HSGLVQEG 438
           MI+   QHG  E A +LF +M    ++PD IT A +L+ C            H  + + G
Sbjct: 503 MIAGHAQHGSYETAYKLFQEMQNEELEPDNITFASVLSGCKNPEALELGKQIHGRITESG 562

Query: 439 LTYFESMTHDL--------------GIIPNQEHHACLIELLAQAGCSDQ--------LMN 476
           L    ++ + L               +  + +H   +       GC+DQ        L  
Sbjct: 563 LQLDVNLGNALINMYIRCGSLQDARNVFHSLQHRDVMSWTAMIGGCADQGEDMKAIELFW 622

Query: 477 QLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGK 536
           Q++   +      ++++  VC     +D G+KV+  ++  N       G+ +++ SA  K
Sbjct: 623 QMQNEGFRPVKSTFSSILKVCTSSACLDEGKKVIAYIL--NSGYELDTGVGNALISAYSK 680

Query: 537 GRLVEKVRQLINERQFKKEQAISWIEI 563
              +   R++ +  +      +SW +I
Sbjct: 681 SGSMTDAREVFD--KMPSRDIVSWNKI 705


>gi|115439575|ref|NP_001044067.1| Os01g0715900 [Oryza sativa Japonica Group]
 gi|20160882|dbj|BAB89820.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113533598|dbj|BAF05981.1| Os01g0715900 [Oryza sativa Japonica Group]
 gi|125571815|gb|EAZ13330.1| hypothetical protein OsJ_03251 [Oryza sativa Japonica Group]
          Length = 608

 Score =  310 bits (794), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 174/572 (30%), Positives = 300/572 (52%), Gaps = 37/572 (6%)

Query: 20  LIQSFLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLK 79
           LI +   L S  +L +A SSL    +RG  +P   +  +++ CA   + + GK+VH H  
Sbjct: 56  LISALSRLCSHQELLDAFSSLH---RRGSDVPPGCVPLVVKSCAILAASRQGKQVHCH-A 111

Query: 80  LTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHAR 139
           + +      F+   L+  Y K G    A KVFD++PVK+    N +++GY+  G +  AR
Sbjct: 112 IVRGLLGDIFVQTALVDFYAKNGDMDCAVKVFDEMPVKDPIPMNCLITGYSKSGDVVKAR 171

Query: 140 NLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLE 199
            LFD M  R   SWN+MI  YA  G  +E L+ ++ +       N  + A + +IC K  
Sbjct: 172 RLFDGMVRRTSASWNSMIACYAHGGEYQEALRLFRRMLSEGARPNAITIATMFSICAKTG 231

Query: 200 ELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVS 259
           +L+  +                                 AR L  E D ++++  T ++ 
Sbjct: 232 DLETGKW--------------------------------ARSLIAEQDLQNMIVHTALME 259

Query: 260 GYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHT 319
            Y K   ++ A + F+ M +++ V+W+T+IAGY +NG   ++LELF RM     +PN+ T
Sbjct: 260 MYVKCRAIDEARREFDRMQQRDVVAWSTMIAGYAQNGRPHESLELFERMKATSCKPNEVT 319

Query: 320 FSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTD 379
               L ACA + S + G Q+   +   N    + + S+LIDMY+KCG +   R VF+  +
Sbjct: 320 LVGVLSACAQLGSDELGGQIGSHVESQNLPLTSYLGSALIDMYTKCGHVGRARSVFNRME 379

Query: 380 NKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGL 439
           +K   + WN+M+  L  +G+ + AI L+ +M    V+P++IT   +L ACTH+GLV +G+
Sbjct: 380 HKV-VITWNSMMRGLALNGFAQDAITLYKEMTEEDVQPNEITFVALLTACTHAGLVDQGM 438

Query: 440 TYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRI 499
           ++F+ M     + P  EH AC+++LL ++G   +    +  M  E ++ +W+ L   CR 
Sbjct: 439 SFFKEMKTIHHVSPQVEHCACIVDLLCKSGRLREAYKFICDMEVEPNAVIWSTLLSACRA 498

Query: 500 HGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAIS 559
           H ++++ +    +L+   P +S+ + LLS+IY+  G    V ++R L+  +  +K  A S
Sbjct: 499 HADVELAKLAASKLLVLEPDNSSIYVLLSNIYADAGLWGDVREIRDLMRSKNVQKLSAYS 558

Query: 560 WIEIENKVHAFSVSDSLHPMRDVLYSVLEQLA 591
           WIE++ +VH F V D+ HP    +++V++ + 
Sbjct: 559 WIELDGEVHKFLVQDTYHPKSAEIFNVVDGMG 590



 Score =  165 bits (418), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 90/298 (30%), Positives = 157/298 (52%), Gaps = 2/298 (0%)

Query: 136 KHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTIC 195
           + AR+LFD +         T+I   ++  + +E L  +  L R            ++  C
Sbjct: 36  RAARHLFDAVPRPTPALCGTLISALSRLCSHQELLDAFSSLHRRGSDVPPGCVPLVVKSC 95

Query: 196 VKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWT 255
             L   +  +QVH   +V G L ++ + +++VD YAK G++  A ++FDE   +D +   
Sbjct: 96  AILAASRQGKQVHCHAIVRGLLGDIFVQTALVDFYAKNGDMDCAVKVFDEMPVKDPIPMN 155

Query: 256 TMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRP 315
            +++GY+K GD+  A +LF+ M  +   SW ++IA Y   G  Q+AL LF RM+    RP
Sbjct: 156 CLITGYSKSGDVVKARRLFDGMVRRTSASWNSMIACYAHGGEYQEALRLFRRMLSEGARP 215

Query: 316 NQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVF 375
           N  T ++    CA    L+ GK     +   + + N IV ++L++MY KC  +++ R+ F
Sbjct: 216 NAITIATMFSICAKTGDLETGKWARSLIAEQDLQ-NMIVHTALMEMYVKCRAIDEARREF 274

Query: 376 DLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSG 433
           D    + + + W+TMI+   Q+G   +++ LF  M  +S KP+++TL  +L+AC   G
Sbjct: 275 DRMQQR-DVVAWSTMIAGYAQNGRPHESLELFERMKATSCKPNEVTLVGVLSACAQLG 331



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 93/360 (25%), Positives = 168/360 (46%), Gaps = 27/360 (7%)

Query: 12  RKNLPNNCLIQSFLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLG 71
           +  +P NCLI  +      G + +A    D + +R        +A         ++L+L 
Sbjct: 149 KDPIPMNCLITGY---SKSGDVVKARRLFDGMVRRTSASWNSMIACYAHGGEYQEALRLF 205

Query: 72  KRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVD----ARKVFDKIPVKNLFSYNNMLS 127
           +R+     L++   P       + S+  K G D++    AR +  +  ++N+  +  ++ 
Sbjct: 206 RRM-----LSEGARPNAITIATMFSICAKTG-DLETGKWARSLIAEQDLQNMIVHTALME 259

Query: 128 GYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFS 187
            Y     +  AR  FD M +RDVV+W+TMI GYA++G   E L+ ++ ++  S   NE +
Sbjct: 260 MYVKCRAIDEARREFDRMQQRDVVAWSTMIAGYAQNGRPHESLELFERMKATSCKPNEVT 319

Query: 188 FAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETD 247
             G+L+ C +L   +L  Q+   V          + S+++D Y KCG +  AR +F+  +
Sbjct: 320 LVGVLSACAQLGSDELGGQIGSHVESQNLPLTSYLGSALIDMYTKCGHVGRARSVFNRME 379

Query: 248 ARDVLTWTTMVSGYAKLGDMESASKLFNEMPEK----NPVSWTTLIAGYTRNGLGQKALE 303
            + V+TW +M+ G A  G  + A  L+ EM E+    N +++  L+   T  GL  + + 
Sbjct: 380 HKVVITWNSMMRGLALNGFAQDAITLYKEMTEEDVQPNEITFVALLTACTHAGLVDQGMS 439

Query: 304 LFTRMMILRIRPNQHTFSSCLCACASIVSL--KHG--KQVHGFLIRTNFRSNTIVMSSLI 359
            F  M  +      H  S  +  CA IV L  K G  ++ + F+       N ++ S+L+
Sbjct: 440 FFKEMKTI------HHVSPQVEHCACIVDLLCKSGRLREAYKFICDMEVEPNAVIWSTLL 493



 Score = 75.1 bits (183), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 60/259 (23%), Positives = 111/259 (42%), Gaps = 41/259 (15%)

Query: 269 SASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLC--- 325
           +A  LF+ +P   P    TLI+  +R    Q+ L+ F+ +     R        C+    
Sbjct: 37  AARHLFDAVPRPTPALCGTLISALSRLCSHQELLDAFSSLH----RRGSDVPPGCVPLVV 92

Query: 326 -ACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFD-------- 376
            +CA + + + GKQVH   I      +  V ++L+D Y+K G ++   +VFD        
Sbjct: 93  KSCAILAASRQGKQVHCHAIVRGLLGDIFVQTALVDFYAKNGDMDCAVKVFDEMPVKDPI 152

Query: 377 --------------------LTDN--KENSMLWNTMISALTQHGYDEQAIRLFHDMVRSS 414
                               L D   +  S  WN+MI+     G  ++A+RLF  M+   
Sbjct: 153 PMNCLITGYSKSGDVVKARRLFDGMVRRTSASWNSMIACYAHGGEYQEALRLFRRMLSEG 212

Query: 415 VKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQL 474
            +P+ IT+A + + C  +G ++ G  +  S+  +   + N   H  L+E+  +    D+ 
Sbjct: 213 ARPNAITIATMFSICAKTGDLETG-KWARSLIAEQD-LQNMIVHTALMEMYVKCRAIDEA 270

Query: 475 MNQLEKMPYEHDSYLWNAL 493
             + ++M  + D   W+ +
Sbjct: 271 RREFDRM-QQRDVVAWSTM 288


>gi|255551609|ref|XP_002516850.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223543938|gb|EEF45464.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 623

 Score =  310 bits (794), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 182/587 (31%), Positives = 302/587 (51%), Gaps = 9/587 (1%)

Query: 11  NRKNLPNNCLIQSFLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKL 70
           NR  +  N +I S+  L   G   EA+S    +     +    T    L  CA + S   
Sbjct: 33  NRDTVAWNSMITSYSQL---GFHQEALSIFYQMRNTNTKPDHFTFTATLSACAGAGSFPF 89

Query: 71  GKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYA 130
           G ++H  + +    +    ++N LI MY KC     A +VF ++   N  S+ ++L  Y 
Sbjct: 90  GTKIHALVIILGYHSSLP-VNNSLIDMYGKCFDAFSAGQVFKEMGDINEVSWCSLLFAYT 148

Query: 131 NLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAG 190
           N G    A  +F+ M  +  ++WNTMI G  + G +E  L  ++ +R   +  ++++++ 
Sbjct: 149 NSGRFSEASEIFNLMPRKFEIAWNTMIAGLGRYGEIELCLDMFREMRESLLEPDQWTYSA 208

Query: 191 ILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARD 250
           +++ C +  E      +HG V+ +G+ S +   +SI+  YAK G L+DA ++ + T    
Sbjct: 209 LISACTESLEFLSGCMLHGLVIRSGWSSAMEAKNSILSLYAKFGSLNDALKVVESTGRLT 268

Query: 251 VLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMI 310
            ++W  ++  Y K+G +  A  +F  +PEKN VSWT++I GY RNG G++AL  F  M  
Sbjct: 269 QVSWNAIIDAYMKVGYVNEAYLMFQSLPEKNIVSWTSMITGYARNGYGEEALRFFVAMAS 328

Query: 311 LRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLND 370
               P+  TF + L AC+S+  L HG+ VHG  IR  F +   V + L++MY+KCG L+ 
Sbjct: 329 NCFLPDDFTFGAVLHACSSLAVLGHGRMVHGCAIRNGFSTYLYVGNGLVNMYAKCGDLDG 388

Query: 371 GRQVF-DLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNAC 429
               F D+    ++ + +N ++ A   HG   +A++L+ DM+    KPDK+T   +L  C
Sbjct: 389 SILAFHDIC--AKDLVSFNALLFAFGLHGKASEALQLYEDMMTCGTKPDKMTFIGLLMTC 446

Query: 430 THSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHD--S 487
           +HSGL++EG  +F SM    G+    +H AC++++L + G   +    ++K     D  +
Sbjct: 447 SHSGLIEEGRLFFNSMKSVHGLSYEADHVACMVDMLGRGGYLAEAKELVKKYSKTSDVEA 506

Query: 488 YLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLI 547
               AL G C  HG ++MG  +   L    P    ++ L S++Y   G+ +  E VR+ +
Sbjct: 507 SSCEALLGACSAHGEVEMGTYLGKTLKTLEPNKEISYVLQSNLYCVRGQWKEAEMVRKAM 566

Query: 548 NERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQM 594
            +   KK    SWIE+ NKV AF   + L+P  D LY  L  L  +M
Sbjct: 567 VDEGLKKMPGCSWIEVRNKVTAFVAGNHLYPYTDELYKTLYFLEFEM 613



 Score =  190 bits (482), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 99/351 (28%), Positives = 175/351 (49%), Gaps = 30/351 (8%)

Query: 118 NLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLR 177
           NLF   + +S   + G + HAR LFD M  RD V+WN+MI  Y++ G  +E L  +  +R
Sbjct: 4   NLFRITSKISALGSSGYIVHARKLFDEMPNRDTVAWNSMITSYSQLGFHQEALSIFYQMR 63

Query: 178 RFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELS 237
             +   + F+F   L+ C          ++H  V++ G+ S++ +++S++D Y KC +  
Sbjct: 64  NTNTKPDHFTFTATLSACAGAGSFPFGTKIHALVIILGYHSSLPVNNSLIDMYGKCFDAF 123

Query: 238 DARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGL 297
            A ++F E    + ++W +++  Y   G    AS++FN MP K  ++W T+IAG  R G 
Sbjct: 124 SAGQVFKEMGDINEVSWCSLLFAYTNSGRFSEASEIFNLMPRKFEIAWNTMIAGLGRYGE 183

Query: 298 GQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSS 357
            +  L++F  M    + P+Q T+S+ + AC   +    G  +HG +IR+ + S     +S
Sbjct: 184 IELCLDMFREMRESLLEPDQWTYSALISACTESLEFLSGCMLHGLVIRSGWSSAMEAKNS 243

Query: 358 LIDMYSKCGCLNDGRQVFDLTDN------------------------------KENSMLW 387
           ++ +Y+K G LND  +V + T                                ++N + W
Sbjct: 244 ILSLYAKFGSLNDALKVVESTGRLTQVSWNAIIDAYMKVGYVNEAYLMFQSLPEKNIVSW 303

Query: 388 NTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEG 438
            +MI+   ++GY E+A+R F  M  +   PD  T   +L+AC+   ++  G
Sbjct: 304 TSMITGYARNGYGEEALRFFVAMASNCFLPDDFTFGAVLHACSSLAVLGHG 354



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 66/246 (26%), Positives = 109/246 (44%), Gaps = 63/246 (25%)

Query: 218 SNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEM 277
           SN+   +S + A    G +  AR+LFDE   RD + W +M++ Y++L             
Sbjct: 3   SNLFRITSKISALGSSGYIVHARKLFDEMPNRDTVAWNSMITSYSQL------------- 49

Query: 278 PEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGK 337
                             G  Q+AL +F +M     +P+  TF++ L ACA   S   G 
Sbjct: 50  ------------------GFHQEALSIFYQMRNTNTKPDHFTFTATLSACAGAGSFPFGT 91

Query: 338 QVHGFLIRTNFRSNTIVMSSLIDMYSKC-------------------------------G 366
           ++H  +I   + S+  V +SLIDMY KC                               G
Sbjct: 92  KIHALVIILGYHSSLPVNNSLIDMYGKCFDAFSAGQVFKEMGDINEVSWCSLLFAYTNSG 151

Query: 367 CLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVIL 426
             ++  ++F+L   K   + WNTMI+ L ++G  E  + +F +M  S ++PD+ T + ++
Sbjct: 152 RFSEASEIFNLMPRK-FEIAWNTMIAGLGRYGEIELCLDMFREMRESLLEPDQWTYSALI 210

Query: 427 NACTHS 432
           +ACT S
Sbjct: 211 SACTES 216



 Score = 59.7 bits (143), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 50/85 (58%), Gaps = 1/85 (1%)

Query: 349 RSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFH 408
           RSN   ++S I      G +   R++FD   N++ ++ WN+MI++ +Q G+ ++A+ +F+
Sbjct: 2   RSNLFRITSKISALGSSGYIVHARKLFDEMPNRD-TVAWNSMITSYSQLGFHQEALSIFY 60

Query: 409 DMVRSSVKPDKITLAVILNACTHSG 433
            M  ++ KPD  T    L+AC  +G
Sbjct: 61  QMRNTNTKPDHFTFTATLSACAGAG 85


>gi|147780302|emb|CAN70248.1| hypothetical protein VITISV_032008 [Vitis vinifera]
          Length = 679

 Score =  310 bits (794), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 167/495 (33%), Positives = 268/495 (54%), Gaps = 37/495 (7%)

Query: 108 RKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVE 167
           +KVFD+    +++S     S Y  LG +   R +F+ M +RD+VSWNT+I G A++G  E
Sbjct: 124 KKVFDEGKTSDVYSKKEKESYY--LGSL---RKVFEMMPKRDIVSWNTVISGNAQNGMHE 178

Query: 168 EGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIV 227
           + L   + +    +  + F+ + +L I  +   L   +++HG  +  G+ ++V I SS++
Sbjct: 179 DALMMVREMGNADLRPDSFTLSSVLPIFAEYVNLLKGKEIHGYAIRNGYDADVFIGSSLI 238

Query: 228 DAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTT 287
           D Y                               AK   ++ + ++F  +P+ + +SW +
Sbjct: 239 DMY-------------------------------AKCTRVDDSCRVFYMLPQHDGISWNS 267

Query: 288 LIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTN 347
           +IAG  +NG+  + L+ F +M+I +I+PN  +FSS + ACA + +L  GKQ+HG++IR+ 
Sbjct: 268 IIAGCVQNGMFDEGLKFFQQMLIAKIKPNHVSFSSIMPACAHLTTLHLGKQLHGYIIRSR 327

Query: 348 FRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLF 407
           F  N  + S+L+DMY+KCG +   R +FD  +   + + W  MI     HG+   AI LF
Sbjct: 328 FDGNVFIASALVDMYAKCGNIRTARWIFDKME-LYDMVSWTAMIMGYALHGHAYDAISLF 386

Query: 408 HDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQ 467
             M    VKP+ +    +L AC+H+GLV E   YF SMT D  IIP  EH+A + +LL +
Sbjct: 387 KRMEVEGVKPNYVAFMAVLTACSHAGLVDEAWKYFNSMTQDYRIIPGLEHYAAVADLLGR 446

Query: 468 AGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLL 527
            G  ++    +  M  E    +W+ L   CR+H NI++  KV  +L   +PQ+   + LL
Sbjct: 447 VGRLEEAYEFISDMHIEPTGSVWSTLLAACRVHKNIELAEKVSKKLFTVDPQNIGAYVLL 506

Query: 528 SSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVL 587
           S+IYSA G+ +   K+R  + ++  KK+ A SWIEI+NKVHAF   D  HP  D +   L
Sbjct: 507 SNIYSAAGRWKDARKLRIAMRDKGMKKKPACSWIEIKNKVHAFVAGDKSHPYYDRINEAL 566

Query: 588 EQLAGQMGEDAPSLD 602
           + L  QM  +   LD
Sbjct: 567 KVLLEQMEREGYVLD 581



 Score =  119 bits (298), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 85/297 (28%), Positives = 140/297 (47%), Gaps = 37/297 (12%)

Query: 31  GQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFL 90
           G   +A+  +  +    +R  + TL+ +L   AE  +L  GK +H +  +        F+
Sbjct: 175 GMHEDALMMVREMGNADLRPDSFTLSSVLPIFAEYVNLLKGKEIHGY-AIRNGYDADVFI 233

Query: 91  SNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDV 150
            + LI MY KC    D+ +VF  +P  +  S+N++++G    GM       FD       
Sbjct: 234 GSSLIDMYAKCTRVDDSCRVFYMLPQHDGISWNSIIAGCVQNGM-------FD------- 279

Query: 151 VSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQ 210
                            EGLKF++ +    I  N  SF+ I+  C  L  L L +Q+HG 
Sbjct: 280 -----------------EGLKFFQQMLIAKIKPNHVSFSSIMPACAHLTTLHLGKQLHGY 322

Query: 211 VLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESA 270
           ++ + F  NV I+S++VD YAKCG +  AR +FD+ +  D+++WT M+ GYA  G    A
Sbjct: 323 IIRSRFDGNVFIASALVDMYAKCGNIRTARWIFDKMELYDMVSWTAMIMGYALHGHAYDA 382

Query: 271 SKLFNEMP----EKNPVSWTTLIAGYTRNGLGQKALELFTRM-MILRIRPNQHTFSS 322
             LF  M     + N V++  ++   +  GL  +A + F  M    RI P    +++
Sbjct: 383 ISLFKRMEVEGVKPNYVAFMAVLTACSHAGLVDEAWKYFNSMTQDYRIIPGLEHYAA 439



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 40/150 (26%), Positives = 75/150 (50%), Gaps = 5/150 (3%)

Query: 28  ISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPT 87
           +  G   E +     +    I+    + + I+  CA   +L LGK++H ++ +  R    
Sbjct: 273 VQNGMFDEGLKFFQQMLIAKIKPNHVSFSSIMPACAHLTTLHLGKQLHGYI-IRSRFDGN 331

Query: 88  TFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAE 147
            F+++ L+ MY KCG+   AR +FDK+ + ++ S+  M+ GYA  G    A +LF  M  
Sbjct: 332 VFIASALVDMYAKCGNIRTARWIFDKMELYDMVSWTAMIMGYALHGHAYDAISLFKRMEV 391

Query: 148 RDV----VSWNTMIIGYAKSGAVEEGLKFY 173
             V    V++  ++   + +G V+E  K++
Sbjct: 392 EGVKPNYVAFMAVLTACSHAGLVDEAWKYF 421



 Score = 40.4 bits (93), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 19/57 (33%), Positives = 32/57 (56%)

Query: 315 PNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDG 371
           P+ + F S L +C  +  L+ G+ VHG +IR     +    ++L++MYSK   L +G
Sbjct: 8   PDHNVFPSVLKSCTLMKDLRFGESVHGCIIRLGMGFDLYTCNALMNMYSKFWSLEEG 64


>gi|168044807|ref|XP_001774871.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162673765|gb|EDQ60283.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 902

 Score =  310 bits (794), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 174/585 (29%), Positives = 295/585 (50%), Gaps = 67/585 (11%)

Query: 10  INRKNLPNNCLIQSFLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLK 69
           +NR  +  N +I     L   G   EA    + + + G+     T   +L  C  S +L 
Sbjct: 289 VNRDLIAWNTMIGG---LAEGGYWEEASEVYNQMQREGVMPNKITYVILLNACVNSAALH 345

Query: 70  LGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGY 129
            GK +H  +      T    + N LISMY +CGS                          
Sbjct: 346 WGKEIHSRVAKAGF-TSDIGVQNALISMYSRCGS-------------------------- 378

Query: 130 ANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFA 189
                +K AR +FD M  +DV+SW  MI G AKSG   E L  Y+ +++  +  N  ++ 
Sbjct: 379 -----IKDARLVFDKMVRKDVISWTAMIGGLAKSGFGAEALTVYQEMQQAGVEPNRVTYT 433

Query: 190 GILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDAR 249
            IL  C     L+  R++H QV+  G  ++  + +++V+ Y+ CG + D           
Sbjct: 434 SILNACSSPAALEWGRRIHQQVVEAGLATDAHVGNTLVNMYSMCGSVKD----------- 482

Query: 250 DVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMM 309
                               A ++F+ M +++ V++  +I GY  + LG++AL+LF R+ 
Sbjct: 483 --------------------ARQVFDRMIQRDIVAYNAMIGGYAAHNLGKEALKLFDRLQ 522

Query: 310 ILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLN 369
              ++P++ T+ + L ACA+  SL+  +++H  + +  F S+T V ++L+  Y+KCG  +
Sbjct: 523 EEGLKPDKVTYINMLNACANSGSLEWAREIHTLVRKGGFFSDTSVGNALVSTYAKCGSFS 582

Query: 370 DGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNAC 429
           D   VF+    K N + WN +I    QHG  + A++LF  M    VKPD +T   +L+AC
Sbjct: 583 DASIVFEKM-TKRNVISWNAIIGGSAQHGRGQDALQLFERMKMEGVKPDIVTFVSLLSAC 641

Query: 430 THSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYL 489
           +H+GL++EG  YF SM+ D  IIP  EH+ C+++LL +AG  D+    ++ MP++ ++ +
Sbjct: 642 SHAGLLEEGRRYFCSMSQDFAIIPTIEHYGCMVDLLGRAGQLDEAEALIKTMPFQANTRI 701

Query: 490 WNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINE 549
           W AL G CRIHGN+ +  +  +  +  +  ++  +  LS +Y+A G      K+R+L+ +
Sbjct: 702 WGALLGACRIHGNVPVAERAAESSLKLDLDNAVVYVALSHMYAAAGMWDSAAKLRKLMEQ 761

Query: 550 RQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQM 594
           R   KE   SWI++ +K+H F   D  HP  + +Y+ L++L   M
Sbjct: 762 RGVTKEPGRSWIQVGDKLHYFVAEDRSHPQSEKIYAELDRLTHAM 806



 Score =  202 bits (515), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 130/467 (27%), Positives = 222/467 (47%), Gaps = 78/467 (16%)

Query: 36  AISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLI 95
           A+  +  L Q+G ++ +     +L++C E K L  G++VH H+ +  R  P  +  N LI
Sbjct: 7   AVDVVQYLQQQGAQVNSSDYMKMLKRCIEVKDLVAGRQVHQHI-IQHRTVPDQYTVNALI 65

Query: 96  SMYFKCGSDVDARKVFDKIPV--KNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSW 153
           +MY +CGS  +AR+V+ K+    + + S+N M+ GY   G                    
Sbjct: 66  NMYIQCGSIEEARQVWKKLSYMERTVHSWNAMVVGYIQYGY------------------- 106

Query: 154 NTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLV 213
                       +E+ LK  + +++  ++ +  +    L+ C     L+  R++H Q + 
Sbjct: 107 ------------IEKALKLLRQMQQHGLAPDRTTIMSFLSSCKSPGALEWGREIHFQAMQ 154

Query: 214 TGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKL 273
            G L +V +++ I++ YAKCG + +AR +FD+ + + V++WT  + GYA  G  E+A ++
Sbjct: 155 AGLLFDVKVANCILNMYAKCGSIEEAREVFDKMEKKSVVSWTITIGGYADCGRSETAFEI 214

Query: 274 FNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSL 333
           F +M ++  V                               PN+ T+ S L A +S  +L
Sbjct: 215 FQKMEQEGVV-------------------------------PNRITYISVLNAFSSPAAL 243

Query: 334 KHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISA 393
           K GK VH  ++     S+T V ++L+ MY+KCG   D RQVF+   N+ + + WNTMI  
Sbjct: 244 KWGKAVHSRILNAGHESDTAVGTALVKMYAKCGSYKDCRQVFEKLVNR-DLIAWNTMIGG 302

Query: 394 LTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFE-----SMTHD 448
           L + GY E+A  +++ M R  V P+KIT  ++LNAC +S  +  G            T D
Sbjct: 303 LAEGGYWEEASEVYNQMQREGVMPNKITYVILLNACVNSAALHWGKEIHSRVAKAGFTSD 362

Query: 449 LGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHG 495
           +G+         LI + ++ G         +KM    D   W A+ G
Sbjct: 363 IGV------QNALISMYSRCGSIKDARLVFDKM-VRKDVISWTAMIG 402



 Score =  197 bits (500), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 125/471 (26%), Positives = 214/471 (45%), Gaps = 66/471 (14%)

Query: 31  GQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFL 90
           G+   A      + Q G+     T   +L   +   +LK GK VH  + L       T +
Sbjct: 206 GRSETAFEIFQKMEQEGVVPNRITYISVLNAFSSPAALKWGKAVHSRI-LNAGHESDTAV 264

Query: 91  SNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDV 150
              L+ MY KCGS                                K  R +F+ +  RD+
Sbjct: 265 GTALVKMYAKCGS-------------------------------YKDCRQVFEKLVNRDL 293

Query: 151 VSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQ 210
           ++WNTMI G A+ G  EE  + Y  ++R  +  N+ ++  +L  CV    L   +++H +
Sbjct: 294 IAWNTMIGGLAEGGYWEEASEVYNQMQREGVMPNKITYVILLNACVNSAALHWGKEIHSR 353

Query: 211 VLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESA 270
           V   GF S++ + ++++  Y++CG + DAR +FD+   +DV++WT M+ G AK       
Sbjct: 354 VAKAGFTSDIGVQNALISMYSRCGSIKDARLVFDKMVRKDVISWTAMIGGLAK------- 406

Query: 271 SKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASI 330
                                   +G G +AL ++  M    + PN+ T++S L AC+S 
Sbjct: 407 ------------------------SGFGAEALTVYQEMQQAGVEPNRVTYTSILNACSSP 442

Query: 331 VSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTM 390
            +L+ G+++H  ++     ++  V ++L++MYS CG + D RQVFD    + + + +N M
Sbjct: 443 AALEWGRRIHQQVVEAGLATDAHVGNTLVNMYSMCGSVKDARQVFDRMIQR-DIVAYNAM 501

Query: 391 ISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLG 450
           I     H   ++A++LF  +    +KPDK+T   +LNAC +SG + E      ++    G
Sbjct: 502 IGGYAAHNLGKEALKLFDRLQEEGLKPDKVTYINMLNACANSGSL-EWAREIHTLVRKGG 560

Query: 451 IIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHG 501
              +      L+   A+ G         EKM  + +   WNA+ G    HG
Sbjct: 561 FFSDTSVGNALVSTYAKCGSFSDASIVFEKMT-KRNVISWNAIIGGSAQHG 610



 Score =  188 bits (478), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 130/514 (25%), Positives = 239/514 (46%), Gaps = 44/514 (8%)

Query: 10  INRKNLPNNCLIQSFLSL-ISKGQLSEAISSLDLLA--QRGIRLPAETLAFILQQCAESK 66
           I  + +P+   + + +++ I  G + EA      L+  +R +      +   +Q     K
Sbjct: 50  IQHRTVPDQYTVNALINMYIQCGSIEEARQVWKKLSYMERTVHSWNAMVVGYIQYGYIEK 109

Query: 67  SLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSY---N 123
           +LKL +++  H     R T  +FLS+       + G ++     F  +    LF     N
Sbjct: 110 ALKLLRQMQQHGLAPDRTTIMSFLSSCKSPGALEWGREIH----FQAMQAGLLFDVKVAN 165

Query: 124 NMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISC 183
            +L+ YA  G ++ AR +FD M ++ VVSW   I GYA  G  E   + ++ + +  +  
Sbjct: 166 CILNMYAKCGSIEEAREVFDKMEKKSVVSWTITIGGYADCGRSETAFEIFQKMEQEGVVP 225

Query: 184 NEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLF 243
           N  ++  +L        LK  + VH ++L  G  S+  + +++V  YAKCG   D R++F
Sbjct: 226 NRITYISVLNAFSSPAALKWGKAVHSRILNAGHESDTAVGTALVKMYAKCGSYKDCRQVF 285

Query: 244 DETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALE 303
           ++   RD++ W TM+ G A+ G  E AS+++N+M                R G       
Sbjct: 286 EKLVNRDLIAWNTMIGGLAEGGYWEEASEVYNQM---------------QREG------- 323

Query: 304 LFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYS 363
                    + PN+ T+   L AC +  +L  GK++H  + +  F S+  V ++LI MYS
Sbjct: 324 ---------VMPNKITYVILLNACVNSAALHWGKEIHSRVAKAGFTSDIGVQNALISMYS 374

Query: 364 KCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLA 423
           +CG + D R VFD    K + + W  MI  L + G+  +A+ ++ +M ++ V+P+++T  
Sbjct: 375 RCGSIKDARLVFDKMVRK-DVISWTAMIGGLAKSGFGAEALTVYQEMQQAGVEPNRVTYT 433

Query: 424 VILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPY 483
            ILNAC+    ++ G    + +  + G+  +      L+ + +  G         ++M  
Sbjct: 434 SILNACSSPAALEWGRRIHQQVV-EAGLATDAHVGNTLVNMYSMCGSVKDARQVFDRM-I 491

Query: 484 EHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQN 517
           + D   +NA+ G    H       K+ D+L ++ 
Sbjct: 492 QRDIVAYNAMIGGYAAHNLGKEALKLFDRLQEEG 525



 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 82/354 (23%), Positives = 158/354 (44%), Gaps = 40/354 (11%)

Query: 162 KSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVV 221
           K GAV+      + L++     N   +  +L  C+++++L   RQVH  ++    + +  
Sbjct: 4   KDGAVD----VVQYLQQQGAQVNSSDYMKMLKRCIEVKDLVAGRQVHQHIIQHRTVPDQY 59

Query: 222 ISSSIVDAYAKCGELSDARRLFDETD--ARDVLTWTTMVSGYAKLGDMESASKLFNEMPE 279
             +++++ Y +CG + +AR+++ +     R V +W  MV GY + G +E A KL  +M +
Sbjct: 60  TVNALINMYIQCGSIEEARQVWKKLSYMERTVHSWNAMVVGYIQYGYIEKALKLLRQMQQ 119

Query: 280 KNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQV 339
                          +GL                 P++ T  S L +C S  +L+ G+++
Sbjct: 120 ---------------HGLA----------------PDRTTIMSFLSSCKSPGALEWGREI 148

Query: 340 HGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGY 399
           H   ++     +  V + +++MY+KCG + + R+VFD  + K++ + W   I      G 
Sbjct: 149 HFQAMQAGLLFDVKVANCILNMYAKCGSIEEAREVFDKME-KKSVVSWTITIGGYADCGR 207

Query: 400 DEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHA 459
            E A  +F  M +  V P++IT   +LNA +    ++ G     S   + G   +     
Sbjct: 208 SETAFEIFQKMEQEGVVPNRITYISVLNAFSSPAALKWGKA-VHSRILNAGHESDTAVGT 266

Query: 460 CLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQL 513
            L+++ A+ G         EK+    D   WN + G     G  +   +V +Q+
Sbjct: 267 ALVKMYAKCGSYKDCRQVFEKL-VNRDLIAWNTMIGGLAEGGYWEEASEVYNQM 319


>gi|255594521|ref|XP_002536106.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223520840|gb|EEF26277.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 519

 Score =  310 bits (794), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 158/452 (34%), Positives = 265/452 (58%), Gaps = 4/452 (0%)

Query: 50  LPAE-TLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDAR 108
           LP + T+  +   CA   +L +GK++H    +    +    ++N L++MY K G  V A+
Sbjct: 69  LPTQFTVTNVFASCAALGALDIGKKIH-SFVIKLGLSGCVPVANSLLNMYAKAGDSVMAK 127

Query: 109 KVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEE 168
            VFD++ ++++ S+N M+S + + G    A   F+ M+ERDVV+WN+MI GY++ G  +E
Sbjct: 128 IVFDRMRLRSISSWNIMISLHMHGGRADLALAQFEQMSERDVVTWNSMITGYSQHGFDKE 187

Query: 169 GLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVD 228
            L+ +  +   S+  + F+ A IL+ C  +E L L +Q+H  ++ T F  + V+ ++++ 
Sbjct: 188 ALELFSRMLEDSLKPDRFTLASILSACANIENLNLGKQIHSYIIRTEFDISGVVQNALIS 247

Query: 229 AYAKCGELSDARRLFDETDARD--VLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWT 286
            YAK G +  A+ + +++   D  V+ +T ++ GY KLG++  A  +F+ + + + V+WT
Sbjct: 248 MYAKTGGVEIAQSIVEQSGISDLNVIAFTALLDGYVKLGNITPARHIFDSLKDSDVVAWT 307

Query: 287 TLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRT 346
            +I GY +NGL   A+ELF  M     RPN  T ++ L   +++ SL HGKQ+H   IR+
Sbjct: 308 AMIVGYVQNGLNDDAMELFRIMAKEGPRPNSFTLAAMLSVSSNVASLNHGKQIHASAIRS 367

Query: 347 NFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRL 406
               +  V ++LI MY+K G + D +QVF+L    ++++ W +MI AL QHG  +++I L
Sbjct: 368 GENLSVSVGNALITMYAKAGSITDAQQVFNLIQRNKDTVSWTSMIIALGQHGLGQESIEL 427

Query: 407 FHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLA 466
           F  M+   +KPD IT   +L+ACTH GLV++G  YF  MT    I P   H+AC+I+L  
Sbjct: 428 FEKMLALGIKPDHITYVGVLSACTHVGLVEQGRGYFNLMTSIHKIEPTLSHYACMIDLFG 487

Query: 467 QAGCSDQLMNQLEKMPYEHDSYLWNALHGVCR 498
           +AG   +  + +E MP E D   W +L   C+
Sbjct: 488 RAGLLQEAFSFIENMPIEPDVIAWGSLLSSCK 519



 Score =  213 bits (542), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 113/359 (31%), Positives = 195/359 (54%), Gaps = 36/359 (10%)

Query: 114 IPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFY 173
           +PVK  FS+N +L+GYA LG +  A ++FD + +RD VSW TMI+GY + G  E  +K +
Sbjct: 1   MPVKTTFSWNTILTGYAKLGTLAKAHSVFDEIPDRDSVSWTTMIVGYNQMGRFESAIKMF 60

Query: 174 KVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKC 233
             + +  +   +F+   +   C  L  L + +++H  V+  G    V +++S+++ YAK 
Sbjct: 61  VAMMKDKVLPTQFTVTNVFASCAALGALDIGKKIHSFVIKLGLSGCVPVANSLLNMYAKA 120

Query: 234 GELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYT 293
           G+   A+ +FD    R + +W  M+S +   G  + A   F +M E++ V+W ++I GY+
Sbjct: 121 GDSVMAKIVFDRMRLRSISSWNIMISLHMHGGRADLALAQFEQMSERDVVTWNSMITGYS 180

Query: 294 RNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTI 353
           ++G  ++ALELF+RM+   ++P++ T +S L ACA+I +L  GKQ+H ++IRT F  + +
Sbjct: 181 QHGFDKEALELFSRMLEDSLKPDRFTLASILSACANIENLNLGKQIHSYIIRTEFDISGV 240

Query: 354 VMSSLIDMYSKCG-----------------------CLNDG----------RQVFD-LTD 379
           V ++LI MY+K G                        L DG          R +FD L D
Sbjct: 241 VQNALISMYAKTGGVEIAQSIVEQSGISDLNVIAFTALLDGYVKLGNITPARHIFDSLKD 300

Query: 380 NKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEG 438
           +  + + W  MI    Q+G ++ A+ LF  M +   +P+  TLA +L+  ++   +  G
Sbjct: 301 S--DVVAWTAMIVGYVQNGLNDDAMELFRIMAKEGPRPNSFTLAAMLSVSSNVASLNHG 357



 Score = 62.8 bits (151), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 54/237 (22%), Positives = 102/237 (43%), Gaps = 39/237 (16%)

Query: 28  ISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPT 87
           +  G   +A+    ++A+ G R  + TLA +L   +   SL  GK++H    +   +  +
Sbjct: 314 VQNGLNDDAMELFRIMAKEGPRPNSFTLAAMLSVSSNVASLNHGKQIHAS-AIRSGENLS 372

Query: 88  TFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAE 147
             + N LI+MY K GS  DA++VF+ I                        RN       
Sbjct: 373 VSVGNALITMYAKAGSITDAQQVFNLIQ-----------------------RN------- 402

Query: 148 RDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQV 207
           +D VSW +MII   + G  +E ++ ++ +    I  +  ++ G+L+ C     + L  Q 
Sbjct: 403 KDTVSWTSMIIALGQHGLGQESIELFEKMLALGIKPDHITYVGVLSACT---HVGLVEQG 459

Query: 208 HGQVLVTGFLSNVVISSS----IVDAYAKCGELSDARRLFDETDAR-DVLTWTTMVS 259
            G   +   +  +  + S    ++D + + G L +A    +      DV+ W +++S
Sbjct: 460 RGYFNLMTSIHKIEPTLSHYACMIDLFGRAGLLQEAFSFIENMPIEPDVIAWGSLLS 516


>gi|302770521|ref|XP_002968679.1| hypothetical protein SELMODRAFT_90123 [Selaginella moellendorffii]
 gi|300163184|gb|EFJ29795.1| hypothetical protein SELMODRAFT_90123 [Selaginella moellendorffii]
          Length = 818

 Score =  310 bits (794), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 170/531 (32%), Positives = 280/531 (52%), Gaps = 13/531 (2%)

Query: 73  RVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYN-----NMLS 127
           R+   +K   +   TT++  ++IS +       + RK+  +I V N F  +      +++
Sbjct: 194 RIFKEMKCDVKPNSTTYI--NVISGFSTPEVLPEGRKIHAEI-VANGFDTDLVVATALIN 250

Query: 128 GYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFS 187
            Y   G    AR +FD M +RD+VSWN MI  Y  +G   E L+ Y+ L        + +
Sbjct: 251 MYGKCGSSHEAREVFDKMKKRDMVSWNVMIGCYVLNGDFHEALELYQKLDMEGFKRTKAT 310

Query: 188 FAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETD 247
           F  IL  C  ++ L   R VH  +L  G  S V +++++V+ YAKCG L +AR++F+   
Sbjct: 311 FVSILGACSSVKALAQGRLVHSHILERGLDSEVAVATALVNMYAKCGSLEEARKVFNAMK 370

Query: 248 ARDVLTWTTMVSGYAKLG---DMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALEL 304
            RD + W+T++  YA  G   D   A K+F+ +  ++ +SW  +I  Y +NG    A+++
Sbjct: 371 NRDAVAWSTLIGAYASNGYGKDARKARKVFDRLGSRDTISWNAMITTYVQNGCAVAAMKI 430

Query: 305 FTRMM-ILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYS 363
           F  M     ++P+  TF + L ACAS+  L   K +H  +  +   SN +V ++LI+MY+
Sbjct: 431 FREMTGAAGLKPDAVTFIAVLEACASLGRLSEVKALHAQISESELESNVVVTNTLINMYA 490

Query: 364 KCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLA 423
           +CG L +  ++F     K   + W  M++A +Q+G   +A+ LF +M    VKPD +T  
Sbjct: 491 RCGSLEEAERLFAAAKEK-TVVSWTAMVAAFSQYGRYAEALDLFQEMDLEGVKPDDVTYT 549

Query: 424 VILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPY 483
            IL  CTH G +++G  YF  M     + P  +H A +++LL ++G        LE MP+
Sbjct: 550 SILFVCTHGGSLEQGWRYFTDMAELHALAPTADHFAAMVDLLGRSGRLFDAKELLESMPF 609

Query: 484 EHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKV 543
           E D   W      CRIHG +++G    +++ + +P S+A +  +S+IY+A G    V  V
Sbjct: 610 EPDPVAWMTFLTACRIHGKLELGEAAAERVYELDPSSTAPYIAMSNIYAAHGMWEKVASV 669

Query: 544 RQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQM 594
           R+ + ER  KK   +S+IE++ K+H FS     HP  D +   L +L G M
Sbjct: 670 RKKMEERGLKKLPGLSFIEVDGKLHEFSSGGKYHPRTDEICEELTRLHGLM 720



 Score =  155 bits (392), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 113/463 (24%), Positives = 199/463 (42%), Gaps = 71/463 (15%)

Query: 54  TLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDK 113
           T   +L  C+    +  G+ +H  ++ + R    T + N LISMY KC S VDAR VF+ 
Sbjct: 9   TFLTVLCSCSSCGDVVEGRALHERIRCS-RFERDTMVGNALISMYGKCDSLVDARSVFES 67

Query: 114 IPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFY 173
           +  +                             +R+VVSWN MI  YA++G   E L  Y
Sbjct: 68  MDWR-----------------------------QRNVVSWNAMIAAYAQNGHSTEALVLY 98

Query: 174 KVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKC 233
             +    +  +  +F  +L  C  L +    R++H +V  +G  S   +++++V  YA+ 
Sbjct: 99  WRMNLQGLGTDHVTFVSVLGACSSLAQ---GREIHNRVFYSGLDSFQSLANALVTMYARF 155

Query: 234 GELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYT 293
           G + DA+R+F     RD  +W  ++  +++ GD   A ++F EM                
Sbjct: 156 GSVGDAKRMFQSLQTRDETSWNAVILAHSQSGDWSGALRIFKEMK--------------- 200

Query: 294 RNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTI 353
                              ++PN  T+ + +   ++   L  G+++H  ++   F ++ +
Sbjct: 201 -----------------CDVKPNSTTYINVISGFSTPEVLPEGRKIHAEIVANGFDTDLV 243

Query: 354 VMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRS 413
           V ++LI+MY KCG  ++ R+VFD    K + + WN MI     +G   +A+ L+  +   
Sbjct: 244 VATALINMYGKCGSSHEAREVFDKM-KKRDMVSWNVMIGCYVLNGDFHEALELYQKLDME 302

Query: 414 SVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQ 473
             K  K T   IL AC+    + +G     S   + G+         L+ + A+ G  ++
Sbjct: 303 GFKRTKATFVSILGACSSVKALAQG-RLVHSHILERGLDSEVAVATALVNMYAKCGSLEE 361

Query: 474 LMNQLEKMPYEHDSYLWNALHGVCRIHG---NIDMGRKVVDQL 513
                  M    D+  W+ L G    +G   +    RKV D+L
Sbjct: 362 ARKVFNAMK-NRDAVAWSTLIGAYASNGYGKDARKARKVFDRL 403



 Score =  111 bits (278), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 92/381 (24%), Positives = 174/381 (45%), Gaps = 45/381 (11%)

Query: 184 NEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLF 243
           +  +F  +L  C    ++   R +H ++  + F  + ++ ++++  Y KC  L DAR +F
Sbjct: 6   DNVTFLTVLCSCSSCGDVVEGRALHERIRCSRFERDTMVGNALISMYGKCDSLVDARSVF 65

Query: 244 DETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALE 303
           +  D R                             ++N VSW  +IA Y +NG   +AL 
Sbjct: 66  ESMDWR-----------------------------QRNVVSWNAMIAAYAQNGHSTEALV 96

Query: 304 LFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYS 363
           L+ RM +  +  +  TF S L AC+   SL  G+++H  +  +   S   + ++L+ MY+
Sbjct: 97  LYWRMNLQGLGTDHVTFVSVLGACS---SLAQGREIHNRVFYSGLDSFQSLANALVTMYA 153

Query: 364 KCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLA 423
           + G + D +++F     ++ +  WN +I A +Q G    A+R+F +M +  VKP+  T  
Sbjct: 154 RFGSVGDAKRMFQSLQTRDETS-WNAVILAHSQSGDWSGALRIFKEM-KCDVKPNSTTYI 211

Query: 424 VILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPY 483
            +++  +   ++ EG      +  + G   +      LI +  + G S +     +KM  
Sbjct: 212 NVISGFSTPEVLPEGRKIHAEIVAN-GFDTDLVVATALINMYGKCGSSHEAREVFDKMK- 269

Query: 484 EHDSYLWNALHGVCRIHGNIDMGRKVVDQL-IDQNPQSSATH----GLLSSIYSALGKGR 538
           + D   WN + G   ++G+     ++  +L ++   ++ AT     G  SS+  AL +GR
Sbjct: 270 KRDMVSWNVMIGCYVLNGDFHEALELYQKLDMEGFKRTKATFVSILGACSSV-KALAQGR 328

Query: 539 LVEKVRQLINERQFKKEQAIS 559
           LV      I ER    E A++
Sbjct: 329 LVH---SHILERGLDSEVAVA 346



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 46/145 (31%), Positives = 79/145 (54%), Gaps = 9/145 (6%)

Query: 314 RPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQ 373
           +P+  TF + LC+C+S   +  G+ +H  +  + F  +T+V ++LI MY KC  L D R 
Sbjct: 4   QPDNVTFLTVLCSCSSCGDVVEGRALHERIRCSRFERDTMVGNALISMYGKCDSLVDARS 63

Query: 374 VFDLTDNKE-NSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACT-- 430
           VF+  D ++ N + WN MI+A  Q+G+  +A+ L+  M    +  D +T   +L AC+  
Sbjct: 64  VFESMDWRQRNVVSWNAMIAAYAQNGHSTEALVLYWRMNLQGLGTDHVTFVSVLGACSSL 123

Query: 431 ------HSGLVQEGLTYFESMTHDL 449
                 H+ +   GL  F+S+ + L
Sbjct: 124 AQGREIHNRVFYSGLDSFQSLANAL 148


>gi|224077074|ref|XP_002305120.1| predicted protein [Populus trichocarpa]
 gi|222848084|gb|EEE85631.1| predicted protein [Populus trichocarpa]
          Length = 786

 Score =  310 bits (794), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 175/538 (32%), Positives = 284/538 (52%), Gaps = 64/538 (11%)

Query: 54  TLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDK 113
           TL+  L+ CA     +LG+++H  L +       +FL   LI MY KC S  DAR VF  
Sbjct: 214 TLSSALKACAGMALRELGRQLHSSL-IKMDMGSDSFLGVGLIDMYSKCNSMDDARLVFKL 272

Query: 114 IPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFY 173
           +P                               ERD+++WN +I G++++   EE    +
Sbjct: 273 MP-------------------------------ERDMIAWNAVISGHSQNEEDEEAASLF 301

Query: 174 KVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKC 233
            ++    I  N+ + + +L     L+   + RQ+H   L +GF  +  + +S++D Y KC
Sbjct: 302 PLMHTEGIGFNQTTLSTVLKSIAALQANYMCRQIHALSLKSGFEFDNYVVNSLIDTYGKC 361

Query: 234 GELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYT 293
           G +                               E A+++F E P  + V +T+L+  Y 
Sbjct: 362 GHV-------------------------------EDATRVFEESPIVDLVLFTSLVTAYA 390

Query: 294 RNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTI 353
           ++G G++AL L+  M    I+P+    SS L ACAS+ + + GKQVH  +++  F S+  
Sbjct: 391 QDGQGEEALRLYLEMQDRGIKPDSFVCSSLLNACASLSAYEQGKQVHVHILKFGFMSDIF 450

Query: 354 VMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRS 413
             +SL++MY+KCG + D    F     +   + W+ MI  L QHGY ++A++LF  M++ 
Sbjct: 451 AGNSLVNMYAKCGSIEDASCAFSRIPVR-GIVSWSAMIGGLAQHGYGKEALQLFKQMLKV 509

Query: 414 SVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQ 473
            V P+ ITL  +L AC H+GLV E   YF SM    GI P QEH+AC+I+LL +AG  + 
Sbjct: 510 GVPPNHITLVSVLCACNHAGLVAEAKHYFNSMKILFGIEPMQEHYACMIDLLGRAGKLEA 569

Query: 474 LMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSA 533
            M  + KMP++ ++ +W AL G  RIH NID+G +  + L+   P+ S TH LL++IY++
Sbjct: 570 AMELVNKMPFQANALVWGALLGAARIHKNIDLGEQAAEMLLALEPEKSGTHVLLANIYAS 629

Query: 534 LGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLA 591
           +G    V +VR+L+ + + KKE  +SW+E+++KV+ F V D  H     +Y+ L++L+
Sbjct: 630 VGMWDKVARVRRLMKDGKVKKEPGMSWLEVKDKVYTFIVGDRSHSRSTEIYAKLDELS 687



 Score =  164 bits (416), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 111/382 (29%), Positives = 182/382 (47%), Gaps = 64/382 (16%)

Query: 47  GIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVD 106
           GI+        +L+ C  +K L LGK+VH  + +T   +   F++N L+ +Y KCG    
Sbjct: 5   GIKCNEFAFPSVLKACTVTKDLVLGKQVHGIVVVTGFDS-DEFVANSLVILYAKCG---- 59

Query: 107 ARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAV 166
                                G+ +      AR+LFD + +R VVSWN +   Y  S   
Sbjct: 60  ---------------------GFGD------ARSLFDAIPDRSVVSWNALFSCYVHSDMH 92

Query: 167 EEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSI 226
            E +  +  +    I  NEFS + ++ +C  LE+    R++HG ++  G+ S+   ++++
Sbjct: 93  GEAVSLFHDMVLSGIRPNEFSLSSMINVCTGLEDSVQGRKIHGYLIKLGYDSDAFSANAL 152

Query: 227 VDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWT 286
           VD YA                               K+G +E AS +F+E+ + + VSW 
Sbjct: 153 VDMYA-------------------------------KVGILEDASSVFDEIAKPDIVSWN 181

Query: 287 TLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRT 346
            +IAG   +    +ALEL   M    + PN  T SS L ACA +   + G+Q+H  LI+ 
Sbjct: 182 AIIAGCVLHEYHHRALELLREMNKSGMCPNMFTLSSALKACAGMALRELGRQLHSSLIKM 241

Query: 347 NFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRL 406
           +  S++ +   LIDMYSKC  ++D R VF L   + + + WN +IS  +Q+  DE+A  L
Sbjct: 242 DMGSDSFLGVGLIDMYSKCNSMDDARLVFKLMPER-DMIAWNAVISGHSQNEEDEEAASL 300

Query: 407 FHDMVRSSVKPDKITLAVILNA 428
           F  M    +  ++ TL+ +L +
Sbjct: 301 FPLMHTEGIGFNQTTLSTVLKS 322



 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 96/316 (30%), Positives = 155/316 (49%), Gaps = 36/316 (11%)

Query: 179 FSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSD 238
             I CNEF+F  +L  C   ++L L +QVHG V+VTGF S+  +++S+V  YAKCG   D
Sbjct: 4   LGIKCNEFAFPSVLKACTVTKDLVLGKQVHGIVVVTGFDSDEFVANSLVILYAKCGGFGD 63

Query: 239 ARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLG 298
                                          A  LF+ +P+++ VSW  L + Y  + + 
Sbjct: 64  -------------------------------ARSLFDAIPDRSVVSWNALFSCYVHSDMH 92

Query: 299 QKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSL 358
            +A+ LF  M++  IRPN+ + SS +  C  +     G+++HG+LI+  + S+    ++L
Sbjct: 93  GEAVSLFHDMVLSGIRPNEFSLSSMINVCTGLEDSVQGRKIHGYLIKLGYDSDAFSANAL 152

Query: 359 IDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPD 418
           +DMY+K G L D   VFD    K + + WN +I+    H Y  +A+ L  +M +S + P+
Sbjct: 153 VDMYAKVGILEDASSVFDEI-AKPDIVSWNAIIAGCVLHEYHHRALELLREMNKSGMCPN 211

Query: 419 KITLAVILNACTHSGLVQEGLTYFESMTH-DLGIIPNQEHHACLIELLAQAGCSDQLMNQ 477
             TL+  L AC    L + G     S+   D+G   +      LI++ ++    D     
Sbjct: 212 MFTLSSALKACAGMALRELGRQLHSSLIKMDMG--SDSFLGVGLIDMYSKCNSMDDARLV 269

Query: 478 LEKMPYEHDSYLWNAL 493
            + MP E D   WNA+
Sbjct: 270 FKLMP-ERDMIAWNAV 284



 Score =  149 bits (375), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 120/514 (23%), Positives = 223/514 (43%), Gaps = 68/514 (13%)

Query: 35  EAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHL 94
           EA+S    +   GIR    +L+ ++  C   +    G+++H +L                
Sbjct: 94  EAVSLFHDMVLSGIRPNEFSLSSMINVCTGLEDSVQGRKIHGYL---------------- 137

Query: 95  ISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWN 154
                K G D DA            FS N ++  YA +G+++ A ++FD +A+ D+VSWN
Sbjct: 138 ----IKLGYDSDA------------FSANALVDMYAKVGILEDASSVFDEIAKPDIVSWN 181

Query: 155 TMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVT 214
            +I G          L+  + + +  +  N F+ +  L  C  +   +L RQ+H  ++  
Sbjct: 182 AIIAGCVLHEYHHRALELLREMNKSGMCPNMFTLSSALKACAGMALRELGRQLHSSLIKM 241

Query: 215 GFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLF 274
              S+  +   ++D Y+KC  + DAR +F     RD++ W  ++SG+++  + E A+ LF
Sbjct: 242 DMGSDSFLGVGLIDMYSKCNSMDDARLVFKLMPERDMIAWNAVISGHSQNEEDEEAASLF 301

Query: 275 NEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLK 334
                  P+  T         G+G                 NQ T S+ L + A++ +  
Sbjct: 302 -------PLMHT--------EGIGF----------------NQTTLSTVLKSIAALQANY 330

Query: 335 HGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISAL 394
             +Q+H   +++ F  +  V++SLID Y KCG + D  +VF+      + +L+ ++++A 
Sbjct: 331 MCRQIHALSLKSGFEFDNYVVNSLIDTYGKCGHVEDATRVFE-ESPIVDLVLFTSLVTAY 389

Query: 395 TQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPN 454
            Q G  E+A+RL+ +M    +KPD    + +LNAC      ++G      +    G + +
Sbjct: 390 AQDGQGEEALRLYLEMQDRGIKPDSFVCSSLLNACASLSAYEQGKQVHVHIL-KFGFMSD 448

Query: 455 QEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLI 514
                 L+ + A+ G  +       ++P       W+A+ G    HG      ++  Q++
Sbjct: 449 IFAGNSLVNMYAKCGSIEDASCAFSRIPVR-GIVSWSAMIGGLAQHGYGKEALQLFKQML 507

Query: 515 DQNPQSSATHGLLSSIYSALGKGRLVEKVRQLIN 548
                    H  L S+  A     LV + +   N
Sbjct: 508 KVG--VPPNHITLVSVLCACNHAGLVAEAKHYFN 539



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 58/193 (30%), Positives = 99/193 (51%), Gaps = 3/193 (1%)

Query: 308 MMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGC 367
           M +L I+ N+  F S L AC     L  GKQVHG ++ T F S+  V +SL+ +Y+KCG 
Sbjct: 1   MHLLGIKCNEFAFPSVLKACTVTKDLVLGKQVHGIVVVTGFDSDEFVANSLVILYAKCGG 60

Query: 368 LNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILN 427
             D R +FD   ++ + + WN + S         +A+ LFHDMV S ++P++ +L+ ++N
Sbjct: 61  FGDARSLFDAIPDR-SVVSWNALFSCYVHSDMHGEAVSLFHDMVLSGIRPNEFSLSSMIN 119

Query: 428 ACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDS 487
            CT      +G      +   LG   +      L+++ A+ G  +   +  +++  + D 
Sbjct: 120 VCTGLEDSVQGRKIHGYLI-KLGYDSDAFSANALVDMYAKVGILEDASSVFDEIA-KPDI 177

Query: 488 YLWNALHGVCRIH 500
             WNA+   C +H
Sbjct: 178 VSWNAIIAGCVLH 190



 Score = 70.5 bits (171), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 48/162 (29%), Positives = 80/162 (49%), Gaps = 9/162 (5%)

Query: 24  FLSLISK----GQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLK 79
           F SL++     GQ  EA+     +  RGI+  +   + +L  CA   + + GK+VH+H+ 
Sbjct: 382 FTSLVTAYAQDGQGEEALRLYLEMQDRGIKPDSFVCSSLLNACASLSAYEQGKQVHVHI- 440

Query: 80  LTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHAR 139
           L        F  N L++MY KCGS  DA   F +IPV+ + S++ M+ G A  G  K A 
Sbjct: 441 LKFGFMSDIFAGNSLVNMYAKCGSIEDASCAFSRIPVRGIVSWSAMIGGLAQHGYGKEAL 500

Query: 140 NLFDNMAERDV----VSWNTMIIGYAKSGAVEEGLKFYKVLR 177
            LF  M +  V    ++  +++     +G V E   ++  ++
Sbjct: 501 QLFKQMLKVGVPPNHITLVSVLCACNHAGLVAEAKHYFNSMK 542


>gi|296082479|emb|CBI21484.3| unnamed protein product [Vitis vinifera]
          Length = 590

 Score =  310 bits (794), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 173/547 (31%), Positives = 285/547 (52%), Gaps = 75/547 (13%)

Query: 51  PAETLAFILQQCAESKSLKLGKRVH-------LHLKLTQRKTPTTFLSNHLISMYFKCGS 103
           P++     LQ+  + K    GK +H       LHL +        FL N+L++ Y K G 
Sbjct: 12  PSDPYTSFLQRSLKFKDPFTGKSIHARIIKAGLHLGV--------FLMNNLMNFYAKTGF 63

Query: 104 DVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKS 163
             DA +VFD++PVK++FS+N +LSGYA  G ++ A  +F+ M E D VSW  MI+GY + 
Sbjct: 64  IYDAHRVFDEMPVKSVFSWNIILSGYAKGGRLEEAHRVFEEMPEPDSVSWTAMIVGYNQM 123

Query: 164 GAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVIS 223
           G  E  +  ++ +    +   +F+   +L  C  +E L + R+VH  V+  G  S + ++
Sbjct: 124 GQFENAIGMFREMVSDDVPPTQFTLTNVLASCAAVECLGIGRKVHSFVVKHGLSSYISVA 183

Query: 224 SSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPV 283
           +S+++ YAK G+   A+ +FD    +   T+T ++ GY KLGD+  A ++F+ +  ++ V
Sbjct: 184 NSLLNMYAKSGDPVTAKIVFDRMKLKSTSTFTALLDGYVKLGDINPARRIFDSLRVRDVV 243

Query: 284 SWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFL 343
           +WT +I GY +NG  Q A+ELF  M+    +PN +T ++ L   +S+ SL HG+Q+H   
Sbjct: 244 AWTAMIVGYVQNGFNQDAMELFRSMIKEGPKPNNYTLATMLSVSSSLASLDHGRQIHASA 303

Query: 344 IRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQA 403
            R+   S+  V ++LI MY+K G +ND R VF+L   K +++ W +MI AL QH      
Sbjct: 304 TRSGNASSVSVSNALITMYAKSGSINDARWVFNLIHWKRDTITWTSMIIALAQH------ 357

Query: 404 IRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIE 463
                                        GL +E LT FE M         +  HA +  
Sbjct: 358 -----------------------------GLGEEALTLFERML--------ENAHAFI-- 378

Query: 464 LLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSAT 523
                          E MP E D   W +L   C++H N+++     ++L+   P++S  
Sbjct: 379 ---------------ENMPIEPDVIAWGSLLASCKVHKNVELAEVAAERLLLIEPENSGA 423

Query: 524 HGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVL 583
           +  L+++YSA G+      +R+ + ++  KK+Q  SW++I+NKVH F V D LHP RD +
Sbjct: 424 YSALANVYSACGQWENAANIRKSMKDKGVKKDQGFSWVQIKNKVHIFGVDDGLHPQRDAI 483

Query: 584 YSVLEQL 590
           Y ++ ++
Sbjct: 484 YEMMAKI 490



 Score =  136 bits (342), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 97/349 (27%), Positives = 168/349 (48%), Gaps = 50/349 (14%)

Query: 31  GQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFL 90
           GQ   AI     +    +     TL  +L  CA  + L +G++VH       +   ++++
Sbjct: 124 GQFENAIGMFREMVSDDVPPTQFTLTNVLASCAAVECLGIGRKVH---SFVVKHGLSSYI 180

Query: 91  S--NHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAER 148
           S  N L++MY K G  V A+ VFD++ +K+  ++  +L GY  LG +  AR +FD++  R
Sbjct: 181 SVANSLLNMYAKSGDPVTAKIVFDRMKLKSTSTFTALLDGYVKLGDINPARRIFDSLRVR 240

Query: 149 DVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVH 208
           DVV+W  MI+GY ++G  ++ ++ ++ + +     N ++ A +L++   L  L   RQ+H
Sbjct: 241 DVVAWTAMIVGYVQNGFNQDAMELFRSMIKEGPKPNNYTLATMLSVSSSLASLDHGRQIH 300

Query: 209 GQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETD-ARDVLTWTTMVSGYAKLGDM 267
                +G  S+V +S++++  YAK G ++DAR +F+     RD +TWT+M+   A+    
Sbjct: 301 ASATRSGNASSVSVSNALITMYAKSGSINDARWVFNLIHWKRDTITWTSMIIALAQ---- 356

Query: 268 ESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMI--------LRIRPNQHT 319
                                      +GLG++AL LF RM+         + I P+   
Sbjct: 357 ---------------------------HGLGEEALTLFERMLENAHAFIENMPIEPDVIA 389

Query: 320 FSSCLCACA--SIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCG 366
           + S L +C     V L         LI      N+   S+L ++YS CG
Sbjct: 390 WGSLLASCKVHKNVELAEVAAERLLLIEP---ENSGAYSALANVYSACG 435


>gi|449496903|ref|XP_004160258.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
          Length = 583

 Score =  310 bits (794), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 149/414 (35%), Positives = 247/414 (59%), Gaps = 1/414 (0%)

Query: 137 HARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICV 196
           +A+ +F  +   +V  WNT +  +A+  +  + +  +  LR F IS + ++ + +L  C 
Sbjct: 65  YAKLIFQLLDASEVTHWNTCLRSFAEGDSPADAISLFYRLREFDISPDHYTCSFVLKACS 124

Query: 197 KLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTT 256
           +L +++  + VHG V   G  SN+ + + IV  YA CGE+  AR++FD+   RDV+TW  
Sbjct: 125 RLLDVRNGKIVHGYVEKLGLQSNMFLQNMIVHLYALCGEIGVARKVFDKMPQRDVITWNI 184

Query: 257 MVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPN 316
           M++   K+GD E A KLF EMPE+N  SWT++I GY + G  ++A++LF  M    + PN
Sbjct: 185 MIARLVKMGDAEGAYKLFAEMPERNVRSWTSMIGGYAQCGKSKEAIDLFLEMEDAGLLPN 244

Query: 317 QHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFD 376
           + T  + L ACA + +L  G+++H F  R+ +  N  V ++LIDMY KCGCL D  ++FD
Sbjct: 245 EVTVVAVLVACADMGNLVLGRRIHDFSNRSGYEKNIRVCNTLIDMYVKCGCLEDACRIFD 304

Query: 377 LTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQ 436
             + +   + W+ MI+ L  HG  E A+ LF+ M+ + VKP+ +T   IL+AC+H G+V+
Sbjct: 305 NMEER-TVVSWSAMIAGLAAHGRAEDALALFNKMINTGVKPNAVTFIGILHACSHMGMVE 363

Query: 437 EGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGV 496
           +G  YF SMT D GI+P  EH+ C+++L ++AG   +    +  MP   +  +W AL G 
Sbjct: 364 KGRKYFASMTRDYGIVPRIEHYGCMVDLFSRAGLLQEAHEFIMNMPIAPNGVVWGALLGG 423

Query: 497 CRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINER 550
           C++H N+ +  +    L   +P +   + +LS+IY+  G+   V +VR+L+ +R
Sbjct: 424 CKVHKNVKLAEEATRHLSKLDPLNDGYYVVLSNIYAEAGRWEDVARVRKLMRDR 477



 Score =  157 bits (397), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 101/388 (26%), Positives = 182/388 (46%), Gaps = 37/388 (9%)

Query: 34  SEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNH 93
           ++AIS    L +  I     T +F+L+ C+    ++ GK VH +++    ++   FL N 
Sbjct: 95  ADAISLFYRLREFDISPDHYTCSFVLKACSRLLDVRNGKIVHGYVEKLGLQS-NMFLQNM 153

Query: 94  LISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSW 153
           ++ +Y  CG    ARKVFDK+P +++ ++N M++    +G  + A  LF  M ER+V SW
Sbjct: 154 IVHLYALCGEIGVARKVFDKMPQRDVITWNIMIARLVKMGDAEGAYKLFAEMPERNVRSW 213

Query: 154 NTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLV 213
            +MI GYA+ G  +E +  +  +    +  NE +   +L  C  +  L L R++H     
Sbjct: 214 TSMIGGYAQCGKSKEAIDLFLEMEDAGLLPNEVTVVAVLVACADMGNLVLGRRIHDFSNR 273

Query: 214 TGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKL 273
           +G+  N+ + ++++D Y KCG L DA R+FD  + R V++W+ M++G A  G  E A  L
Sbjct: 274 SGYEKNIRVCNTLIDMYVKCGCLEDACRIFDNMEERTVVSWSAMIAGLAAHGRAEDALAL 333

Query: 274 FNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSL 333
           FN+M                                   ++PN  TF   L AC+ +  +
Sbjct: 334 FNKMINTG-------------------------------VKPNAVTFIGILHACSHMGMV 362

Query: 334 KHGKQVHGFLIRTNFRSNTIV-MSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMIS 392
           + G++    + R       I     ++D++S+ G L +  +         N ++W  ++ 
Sbjct: 363 EKGRKYFASMTRDYGIVPRIEHYGCMVDLFSRAGLLQEAHEFIMNMPIAPNGVVWGALLG 422

Query: 393 ALTQHGYDEQAIRLFHDMVRSSVKPDKI 420
               H    + ++L  +  R   K D +
Sbjct: 423 GCKVH----KNVKLAEEATRHLSKLDPL 446



 Score = 65.5 bits (158), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 76/301 (25%), Positives = 129/301 (42%), Gaps = 41/301 (13%)

Query: 21  IQSFLSLISK----GQLSEAISSLDLLAQRGIRLPAE-TLAFILQQCAESKSLKLGKRVH 75
           ++S+ S+I      G+  EAI     +   G+ LP E T+  +L  CA+  +L LG+R+H
Sbjct: 210 VRSWTSMIGGYAQCGKSKEAIDLFLEMEDAGL-LPNEVTVVAVLVACADMGNLVLGRRIH 268

Query: 76  LHLKLTQRK--TPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLG 133
                + R        + N LI MY KCG   DA ++FD +  + + S++ M++G A  G
Sbjct: 269 ---DFSNRSGYEKNIRVCNTLIDMYVKCGCLEDACRIFDNMEERTVVSWSAMIAGLAAHG 325

Query: 134 MMKHARNLFDNMAERDVVSWNTMIIGYAKS----GAVEEGLKFYKVLRR----------F 179
             + A  LF+ M    V       IG   +    G VE+G K++  + R          +
Sbjct: 326 RAEDALALFNKMINTGVKPNAVTFIGILHACSHMGMVEKGRKYFASMTRDYGIVPRIEHY 385

Query: 180 SISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDA 239
               + FS AG+L    +  E  +   +    +V G L    +    V    K  E  +A
Sbjct: 386 GCMVDLFSRAGLLQ---EAHEFIMNMPIAPNGVVWGAL----LGGCKVHKNVKLAE--EA 436

Query: 240 RRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTL-----IAGYTR 294
            R   + D  +   +  + + YA+ G  E  +++   M ++   +W  L     + GY  
Sbjct: 437 TRHLSKLDPLNDGYYVVLSNIYAEAGRWEDVARVRKLMRDRG--TWEKLLQRMKLKGYVP 494

Query: 295 N 295
           N
Sbjct: 495 N 495



 Score = 52.8 bits (125), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 42/184 (22%), Positives = 80/184 (43%), Gaps = 3/184 (1%)

Query: 337 KQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQ 396
           KQ+H  L++TN   +++ +S +  + +     +  + +F L D  E +  WNT + +  +
Sbjct: 32  KQLHAHLLKTNSPLSSLPLSRVASVCAFNSSFSYAKLIFQLLDASEVTH-WNTCLRSFAE 90

Query: 397 HGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQE 456
                 AI LF+ +    + PD  T + +L AC+    V+ G          LG+  N  
Sbjct: 91  GDSPADAISLFYRLREFDISPDHYTCSFVLKACSRLLDVRNG-KIVHGYVEKLGLQSNMF 149

Query: 457 HHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQ 516
               ++ L A  G         +KMP + D   WN +       G+ +   K+  ++ ++
Sbjct: 150 LQNMIVHLYALCGEIGVARKVFDKMP-QRDVITWNIMIARLVKMGDAEGAYKLFAEMPER 208

Query: 517 NPQS 520
           N +S
Sbjct: 209 NVRS 212


>gi|449505835|ref|XP_004162581.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g02750-like [Cucumis sativus]
          Length = 741

 Score =  310 bits (794), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 168/502 (33%), Positives = 281/502 (55%), Gaps = 24/502 (4%)

Query: 92  NHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVV 151
           N ++  Y   G    A   F KIP  N+ S+  MLSG+A+ G M  ARNLF+ M  +++V
Sbjct: 206 NLMVDGYVGVGDLDSAWMFFKKIPTPNVVSWVTMLSGFAHYGRMTEARNLFNEMPTKNLV 265

Query: 152 SWNTMIIGYAKSGAVEEGLK-FYKVLRRFSIS----CNEFSFAGILTICVKLEELKLTRQ 206
           SWN MI  Y +   +++  K F ++  + S+S     N +   G L    ++  L   + 
Sbjct: 266 SWNAMIGAYVRENQIDDAYKLFMEMPEKDSVSWTAMINGYVRVGKLLQAREILNLMPYKN 325

Query: 207 VHGQV-LVTGFL-------SNVVIS----------SSIVDAYAKCGELSDARRLFDETDA 248
           +  Q  ++ G+L       +N + S          +S++  YA CG   +A RLF E   
Sbjct: 326 IAAQTAMINGYLQSGRMDEANEIFSQISVRDSVCWNSMITGYAHCGRTDEALRLFQEMVC 385

Query: 249 RDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRM 308
           +D+++W TM++ YA+ G M+ A ++FNEM E+N VSW +LI GY +NGL  +AL  F  M
Sbjct: 386 KDMVSWNTMIAAYAQAGQMDKALEMFNEMQERNVVSWNSLITGYVQNGLYFEALNCFILM 445

Query: 309 MILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCL 368
                +P+Q T   CL A A++ +L  G Q+H   I+T F ++  V ++++ MY+K G +
Sbjct: 446 KQQGEKPDQTTIVCCLRASANLAALNVGVQLHHLTIKTGFGNDLFVKNAILTMYAKSGRV 505

Query: 369 NDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNA 428
            +   VF     K+  + WN++I+    +G  ++A+ LF  M    + PD++T   +L+A
Sbjct: 506 PEAENVFAEIKXKD-VVSWNSLIAGYALNGCGKEAVELFEVMPLRGIIPDEVTFTGLLSA 564

Query: 429 CTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSY 488
           C H G V +GL  F+SMT    I P  EH+AC+I LL + G  ++ +  ++ M     + 
Sbjct: 565 CNHGGFVDQGLNLFKSMTETYSIKPQSEHYACVINLLGRVGRLEEAVEIVQGMKTVSSAK 624

Query: 489 LWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLIN 548
           +W AL   CRIH N+++ +   ++L+   PQ+++ + LLS++++  G+  +VE+VR L+ 
Sbjct: 625 IWGALLWACRIHHNLELAKYSAERLLALEPQNASNYVLLSNMHAEAGRWDMVERVRVLMK 684

Query: 549 ERQFKKEQAISWIEIENKVHAF 570
           E + +K+   SWIEI+N++H F
Sbjct: 685 ENKAEKQPGCSWIEIDNQLHCF 706



 Score =  164 bits (416), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 111/404 (27%), Positives = 197/404 (48%), Gaps = 40/404 (9%)

Query: 66  KSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNM 125
           +S ++ + V + LK+T+R   T    N +IS Y K G   +AR++FD +P +NL S+N+M
Sbjct: 27  RSGRIEEAVAVFLKMTERNIVTY---NSMISAYAKNGRIANARELFDLMPQRNLVSWNSM 83

Query: 126 LSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVL-RRFSISCN 184
           ++GY +  +++ A  LFD M +RD+ SW  MI  Y + G +E+  + + +L  +    C 
Sbjct: 84  IAGYLHNELVEDAARLFDRMFKRDIYSWTLMITCYTRIGELEKARELFNLLPDKQDTVCR 143

Query: 185 EFSFAG-----ILTICVKL-EELKLTRQVHGQVLVTGFLS-----------------NVV 221
               AG     +     KL +E+ +   V    +++G+                   NVV
Sbjct: 144 NALIAGYAKKRLFREAKKLFDEMLVKNVVSWNSILSGYTKNGKMQLGLQFFEAMGERNVV 203

Query: 222 ISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKN 281
             + +VD Y   G+L  A   F +    +V++W TM+SG+A  G M  A  LFNEMP KN
Sbjct: 204 SWNLMVDGYVGVGDLDSAWMFFKKIPTPNVVSWVTMLSGFAHYGRMTEARNLFNEMPTKN 263

Query: 282 PVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHG 341
            VSW  +I  Y R      A +LF  M       +  ++++ +     +  L   +++  
Sbjct: 264 LVSWNAMIGAYVRENQIDDAYKLFMEM----PEKDSVSWTAMINGYVRVGKLLQAREILN 319

Query: 342 FLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDE 401
            +   N  + T    ++I+ Y + G +++  ++F     ++ S+ WN+MI+     G  +
Sbjct: 320 LMPYKNIAAQT----AMINGYLQSGRMDEANEIFSQISVRD-SVCWNSMITGYAHCGRTD 374

Query: 402 QAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESM 445
           +A+RLF +M    V  D ++   ++ A   +G + + L  F  M
Sbjct: 375 EALRLFQEM----VCKDMVSWNTMIAAYAQAGQMDKALEMFNEM 414



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 82/314 (26%), Positives = 146/314 (46%), Gaps = 22/314 (7%)

Query: 219 NVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMP 278
           N+V  +S++ AYAK G +++AR LFD    R++++W +M++GY     +E A++LF+ M 
Sbjct: 45  NIVTYNSMISAYAKNGRIANARELFDLMPQRNLVSWNSMIAGYLHNELVEDAARLFDRMF 104

Query: 279 EKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQ 338
           +++  SWT +I  YTR G  +KA ELF  +      P++   + C  A  +  + K   +
Sbjct: 105 KRDIYSWTLMITCYTRIGELEKARELFNLL------PDKQD-TVCRNALIAGYAKKRLFR 157

Query: 339 VHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHG 398
               L       N +  +S++  Y+K G +  G Q F+    + N + WN M+      G
Sbjct: 158 EAKKLFDEMLVKNVVSWNSILSGYTKNGKMQLGLQFFEAMGER-NVVSWNLMVDGYVGVG 216

Query: 399 YDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHH 458
             + A   F  +      P+ ++   +L+   H G + E    F  M        N    
Sbjct: 217 DLDSAWMFFKKI----PTPNVVSWVTMLSGFAHYGRMTEARNLFNEMP-----TKNLVSW 267

Query: 459 ACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNAL-HGVCRIHGNIDMGRKVVDQLIDQN 517
             +I    +    D       +MP E DS  W A+ +G  R+ G +   R++++ +  +N
Sbjct: 268 NAMIGAYVRENQIDDAYKLFMEMP-EKDSVSWTAMINGYVRV-GKLLQAREILNLMPYKN 325

Query: 518 --PQSSATHGLLSS 529
              Q++  +G L S
Sbjct: 326 IAAQTAMINGYLQS 339



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 51/190 (26%), Positives = 95/190 (50%), Gaps = 9/190 (4%)

Query: 18  NCLIQSFLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLH 77
           N LI  +   +  G   EA++   L+ Q+G +    T+   L+  A   +L +G ++H H
Sbjct: 423 NSLITGY---VQNGLYFEALNCFILMKQQGEKPDQTTIVCCLRASANLAALNVGVQLH-H 478

Query: 78  LKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKH 137
           L +        F+ N +++MY K G   +A  VF +I  K++ S+N++++GYA  G  K 
Sbjct: 479 LTIKTGFGNDLFVKNAILTMYAKSGRVPEAENVFAEIKXKDVVSWNSLIAGYALNGCGKE 538

Query: 138 ARNLFDNMAER----DVVSWNTMIIGYAKSGAVEEGLKFYKVL-RRFSISCNEFSFAGIL 192
           A  LF+ M  R    D V++  ++      G V++GL  +K +   +SI      +A ++
Sbjct: 539 AVELFEVMPLRGIIPDEVTFTGLLSACNHGGFVDQGLNLFKSMTETYSIKPQSEHYACVI 598

Query: 193 TICVKLEELK 202
            +  ++  L+
Sbjct: 599 NLLGRVGRLE 608


>gi|357117655|ref|XP_003560579.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g13770, mitochondrial-like [Brachypodium distachyon]
          Length = 614

 Score =  310 bits (793), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 178/568 (31%), Positives = 297/568 (52%), Gaps = 79/568 (13%)

Query: 27  LISKGQLSEAISSL-----DLLAQR----GIRLPAETLAF-----ILQQCAESKSLKLGK 72
           L+++G    A+SSL      ++A R     + +P     F      +  C E ++L  G+
Sbjct: 2   LVARGLRRVAVSSLVRWDMSVVAARHAASSLAVPGADARFHDYDAAITACVERQALGEGR 61

Query: 73  RVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANL 132
           +VH H+ +  R  P  +L+  LI +Y +CG+                             
Sbjct: 62  QVHAHM-VKARYRPPVYLATRLIILYVRCGA----------------------------- 91

Query: 133 GMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGIL 192
             +  ARN+ D M ER+VVSW  MI GY++SG   E L+ +  + R     NEF+ A +L
Sbjct: 92  --LDDARNVLDGMPERNVVSWTAMISGYSQSGRHAEALELFIRMLRAGCKANEFTLATVL 149

Query: 193 TICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVL 252
           T C   + ++   QVH  V+ T F S++ + SS++D Y K G                  
Sbjct: 150 TSCPVHQSIQQVEQVHSLVVKTNFESHMFVGSSLLDMYGKSG------------------ 191

Query: 253 TWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILR 312
                        +++ A K+F+ +PE++ VS T +I+GY + GL  +AL+LF ++    
Sbjct: 192 -------------NIQEARKVFDMLPERDTVSCTAIISGYAQLGLDDEALDLFRQLYSSG 238

Query: 313 IRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGR 372
           ++ N  TF++ L + + + SL +GKQVHG ++R       ++ +SLIDMYSKCG L   R
Sbjct: 239 MQCNYVTFTTLLTSLSGLASLNYGKQVHGLILRKELPFFIVLQNSLIDMYSKCGKLLYSR 298

Query: 373 QVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHS 432
           +VFD    + +++ WN M+    +HG  ++ ++LF  M    VKPD +TL  +L+ C+H 
Sbjct: 299 RVFDNMPQR-SAISWNAMLMGYGRHGIGQEVVQLFRTMTEE-VKPDSVTLLAVLSGCSHG 356

Query: 433 GLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNA 492
           GLV EGL  F+ +  +   + +  H+ C+I+LL ++G   + ++ +E MP+E    +W +
Sbjct: 357 GLVDEGLDIFDLIVKEQNAVIHIGHYGCVIDLLGRSGQLQKALDLIEHMPFEPTPAIWGS 416

Query: 493 LHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQF 552
           L G CR+H N+ +G  V  +L+D  P ++  + +LS+IY+A G  + V +VR+L+ E   
Sbjct: 417 LLGACRVHINVSVGEVVAQKLLDMEPGNAGNYVILSNIYAAAGMWKDVFRVRKLMLENTV 476

Query: 553 KKEQAISWIEIENKVHAFSVSDSLHPMR 580
            KE A SWI ++  +H F  S+  HP +
Sbjct: 477 TKEPAKSWIILDKVIHTFHSSERFHPRK 504


>gi|224129498|ref|XP_002320601.1| predicted protein [Populus trichocarpa]
 gi|222861374|gb|EEE98916.1| predicted protein [Populus trichocarpa]
          Length = 629

 Score =  310 bits (793), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 156/469 (33%), Positives = 270/469 (57%), Gaps = 9/469 (1%)

Query: 135 MKHARNLFDNMAERDVVSWNTMIIGYAKS--------GAVEEGLKFYKVLRRFSISCNEF 186
           +K+AR  F  +   +  SWNT+I   A S         ++E  L F  +L    +  N+F
Sbjct: 65  IKYARKFFSQIHHPNCFSWNTIIRALADSDDDDLFHVNSLEALLYFSHMLTDGLVEPNKF 124

Query: 187 SFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDET 246
           +F  +L  C KL  ++  +Q+HG V+  G +S+  + S++V  Y  CG + DA  LF +T
Sbjct: 125 TFPCVLKACAKLARIEEGKQLHGFVVKLGLVSDEFVRSNLVRVYVMCGAMKDAHVLFYQT 184

Query: 247 DAR-DVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELF 305
               +V+ W  M+ GY ++GD+ ++ +LF+ MP K+ VSW  +I+G  +NG  ++A+E+F
Sbjct: 185 RLEGNVVLWNVMIDGYVRMGDLRASRELFDSMPNKSVVSWNVMISGCAQNGHFKEAIEMF 244

Query: 306 TRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKC 365
             M +  + PN  T  S L A + + +++ GK VH F  +     + ++ S+LIDMYSKC
Sbjct: 245 HDMQLGDVPPNYVTLVSVLPAVSRLGAIELGKWVHLFAEKNEIEIDDVLGSALIDMYSKC 304

Query: 366 GCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVI 425
           G ++   QVF+   NK+N + W+ +I  L  HG    A+  F  M ++ V P  +    +
Sbjct: 305 GSIDKAVQVFEGIRNKKNPITWSAIIGGLAMHGRARDALDHFWRMQQAGVTPSDVVYIGV 364

Query: 426 LNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEH 485
           L+AC+H+GLV+EG + +  M + +G++P  EH+ C+++LL +AGC ++    +  MP + 
Sbjct: 365 LSACSHAGLVEEGRSIYYHMVNIVGLLPRIEHYGCMVDLLGRAGCLEEAEQLILNMPVKP 424

Query: 486 DSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQ 545
           D  +  AL G C++HGNI+MG ++   L+   P  S ++  LS+++++ G    V KVR 
Sbjct: 425 DDVILKALLGACKMHGNIEMGERIAKILMGWYPHDSGSYVALSNMFASEGNWEGVVKVRL 484

Query: 546 LINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQM 594
            + E   +K+   SWIE++  +H F V D  HP  + ++S+LE+++ ++
Sbjct: 485 KMKELDIRKDPGCSWIELDGVIHEFLVEDDSHPRAEGIHSMLEEMSDRL 533



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 80/359 (22%), Positives = 166/359 (46%), Gaps = 41/359 (11%)

Query: 54  TLAFILQQCAESKSLKLGKRVH---LHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKV 110
           T   +L+ CA+   ++ GK++H   + L L   +    F+ ++L+ +Y  CG+  DA  +
Sbjct: 125 TFPCVLKACAKLARIEEGKQLHGFVVKLGLVSDE----FVRSNLVRVYVMCGAMKDAHVL 180

Query: 111 FDKIPVK-NLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEG 169
           F +  ++ N+  +N M+ GY  +G ++ +R LFD+M  + VVSWN MI G A++G  +E 
Sbjct: 181 FYQTRLEGNVVLWNVMIDGYVRMGDLRASRELFDSMPNKSVVSWNVMISGCAQNGHFKEA 240

Query: 170 LKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDA 229
           ++ +  ++   +  N  +   +L    +L  ++L + VH          + V+ S+++D 
Sbjct: 241 IEMFHDMQLGDVPPNYVTLVSVLPAVSRLGAIELGKWVHLFAEKNEIEIDDVLGSALIDM 300

Query: 230 YAKCGELSDARRLFDET-DARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTL 288
           Y+KCG +  A ++F+   + ++ +TW+ ++ G A                          
Sbjct: 301 YSKCGSIDKAVQVFEGIRNKKNPITWSAIIGGLAM------------------------- 335

Query: 289 IAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIR-TN 347
                 +G  + AL+ F RM    + P+   +   L AC+    ++ G+ ++  ++    
Sbjct: 336 ------HGRARDALDHFWRMQQAGVTPSDVVYIGVLSACSHAGLVEEGRSIYYHMVNIVG 389

Query: 348 FRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRL 406
                     ++D+  + GCL +  Q+      K + ++   ++ A   HG  E   R+
Sbjct: 390 LLPRIEHYGCMVDLLGRAGCLEEAEQLILNMPVKPDDVILKALLGACKMHGNIEMGERI 448


>gi|357143522|ref|XP_003572950.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Brachypodium distachyon]
          Length = 874

 Score =  310 bits (793), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 183/614 (29%), Positives = 312/614 (50%), Gaps = 103/614 (16%)

Query: 54  TLAFILQQCAESKSLKLGKRVHLH-LKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFD 112
           T   +L   A   ++ LG+RVH   +K   R T   F+ N LI+MY KC           
Sbjct: 203 TFTSVLSAVASQGAVDLGRRVHAQSVKFGCRST--VFVCNSLINMYSKC----------- 249

Query: 113 KIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKF 172
                               G+++ A+ +F  M  RD+VSWNT++ G   +    E L+ 
Sbjct: 250 --------------------GLVEEAKAVFRQMETRDMVSWNTLMAGLLLNEHQLEALQL 289

Query: 173 YKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAK 232
           +   R      ++ +++ ++ +C  L++L L RQ+H  VL  GF S+  + ++I+DAY+K
Sbjct: 290 FHDSRASMAKLSQSTYSTVIKLCANLKQLALARQLHSCVLKHGFHSDGNVMTAIMDAYSK 349

Query: 233 CGELSDARRLF-DETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKN---------- 281
           CGEL DA  +F     +++V++WT M+ G  +  D+  A+ LF+ M E N          
Sbjct: 350 CGELDDAFNIFLLMPGSQNVVSWTAMIGGCIQNADIPLAAALFSRMREDNVKPNEFTYST 409

Query: 282 -------------------------PVSWTTLIAGYTRNGLGQKALEL------------ 304
                                    P   T L+A Y++ G  ++AL +            
Sbjct: 410 VLTASIPILLPQIHAQIIKTNYQHAPSVGTALLASYSKLGNTEEALSIFKMIDHKDVVAW 469

Query: 305 -------------------FTRMMILRIRPNQHTFSSCLCACAS-IVSLKHGKQVHGFLI 344
                              F +M +  ++PN+ T SS + ACAS    +  G+Q H   I
Sbjct: 470 SAMLSCYSQAGDCDGATNVFIKMSMQGMKPNEFTISSAIDACASPTAGIDQGRQFHAISI 529

Query: 345 RTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAI 404
           +  ++    V S+L+ MY++ G ++  R VF+   +++  + WN+MIS   QHGY ++A+
Sbjct: 530 KYRYQDAICVGSALVTMYARKGSIDSARIVFERQTDRD-LVSWNSMISGYAQHGYSKEAL 588

Query: 405 RLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIEL 464
             F  M    ++ D  T   ++  CTH+GLV+EG  YF+SM  D  I P  EH++C+++L
Sbjct: 589 DTFRQMETVGIEMDGATFLAVIVGCTHAGLVKEGQQYFDSMVMDHNISPTMEHYSCMVDL 648

Query: 465 LAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATH 524
            ++AG  D+ MN +E MP+   + +W  L G CR+H N+++G+    +L+   P  SAT+
Sbjct: 649 YSRAGKLDETMNLIEGMPFPAGAMVWRTLLGACRVHKNVELGKLAAQKLLLLEPDDSATY 708

Query: 525 GLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLY 584
            LLS+IY+A G+ +  ++VR+L++ ++ KKE   SWI+I+NKVH+F   D  HP+ + +Y
Sbjct: 709 VLLSNIYAAAGRWKERDEVRKLMDSKKVKKEAGCSWIQIKNKVHSFIACDKSHPLSEQIY 768

Query: 585 SVLEQLAGQMGEDA 598
           + L+ +  ++ ++ 
Sbjct: 769 AKLKAMTTRLKQEG 782



 Score =  143 bits (361), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 90/343 (26%), Positives = 163/343 (47%), Gaps = 42/343 (12%)

Query: 86  PTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNM 145
           P       L  +  KCG        FD+  V    +  +M   Y   G ++  R +F+ M
Sbjct: 113 PDRVSGEQLHCLCVKCG--------FDRAEVGVGTALVDM---YMKCGGVEDGRVVFEGM 161

Query: 146 AERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTR 205
            +R+VV+W +++ GY +  A  + +  +  +R   +  N F+F  +L+       + L R
Sbjct: 162 PKRNVVTWTSLLTGYVQGRACSDVMALFFRMRAEGVWPNPFTFTSVLSAVASQGAVDLGR 221

Query: 206 QVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLG 265
           +VH Q +  G  S V + +S+++ Y+KCG + +A+ +F + + RD+++W T+++G     
Sbjct: 222 RVHAQSVKFGCRSTVFVCNSLINMYSKCGLVEEAKAVFRQMETRDMVSWNTLMAGL---- 277

Query: 266 DMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLC 325
                  L NE                       +AL+LF        + +Q T+S+ + 
Sbjct: 278 -------LLNEHQ--------------------LEALQLFHDSRASMAKLSQSTYSTVIK 310

Query: 326 ACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSM 385
            CA++  L   +Q+H  +++  F S+  VM++++D YSKCG L+D   +F L    +N +
Sbjct: 311 LCANLKQLALARQLHSCVLKHGFHSDGNVMTAIMDAYSKCGELDDAFNIFLLMPGSQNVV 370

Query: 386 LWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNA 428
            W  MI    Q+     A  LF  M   +VKP++ T + +L A
Sbjct: 371 SWTAMIGGCIQNADIPLAAALFSRMREDNVKPNEFTYSTVLTA 413



 Score =  122 bits (307), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 105/418 (25%), Positives = 181/418 (43%), Gaps = 41/418 (9%)

Query: 107 ARKVFDKI-PVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNT----MIIGYA 161
           A  VF  + P+  L S   +    A+      AR   D M  RD  + ++     I+ Y 
Sbjct: 16  AAAVFGSLKPLSALASAARLEDDCADTCNAPGARQALDGMPSRDAAAGSSSNPVAIVDYG 75

Query: 162 KSGAVE-EGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNV 220
           + G    E L  +  + R                C +++   ++R +     V G + + 
Sbjct: 76  RRGKGRGEALDHFVDVHR----------------CGRVQGAAVSRVLK----VCGLIPDR 115

Query: 221 VISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEK 280
           V    +     KCG        FD  +   V   T +V  Y K G +E    +F  MP++
Sbjct: 116 VSGEQLHCLCVKCG--------FDRAE---VGVGTALVDMYMKCGGVEDGRVVFEGMPKR 164

Query: 281 NPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVH 340
           N V+WT+L+ GY +       + LF RM    + PN  TF+S L A AS  ++  G++VH
Sbjct: 165 NVVTWTSLLTGYVQGRACSDVMALFFRMRAEGVWPNPFTFTSVLSAVASQGAVDLGRRVH 224

Query: 341 GFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYD 400
              ++   RS   V +SLI+MYSKCG + + + VF   + ++  + WNT+++ L  + + 
Sbjct: 225 AQSVKFGCRSTVFVCNSLINMYSKCGLVEEAKAVFRQMETRD-MVSWNTLMAGLLLNEHQ 283

Query: 401 EQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLT-YFESMTHDLGIIPNQEHHA 459
            +A++LFHD   S  K  + T + ++  C +  L Q  L     S     G   +     
Sbjct: 284 LEALQLFHDSRASMAKLSQSTYSTVIKLCAN--LKQLALARQLHSCVLKHGFHSDGNVMT 341

Query: 460 CLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQN 517
            +++  ++ G  D   N    MP   +   W A+ G C  + +I +   +  ++ + N
Sbjct: 342 AIMDAYSKCGELDDAFNIFLLMPGSQNVVSWTAMIGGCIQNADIPLAAALFSRMREDN 399


>gi|147843467|emb|CAN82070.1| hypothetical protein VITISV_010010 [Vitis vinifera]
          Length = 1005

 Score =  310 bits (793), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 181/570 (31%), Positives = 291/570 (51%), Gaps = 65/570 (11%)

Query: 26  SLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKT 85
           +L+  G   EA+S    +  + ++    TL  IL  CA+   LKLGK +H          
Sbjct: 404 ALVQTGYPEEALSLFQEMQNQKMKPNRVTLMSILPACADLSLLKLGKSIHC--------- 454

Query: 86  PTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNM 145
                        F   +D+D+          +L +   ++S YA  G    A   F+ M
Sbjct: 455 -------------FTVKADMDS----------DLSTGTALVSMYAKCGFFTAALTTFNRM 491

Query: 146 AERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTR 205
           + RD+V+WN++I GYA+ G     +  +  LR  +I+ +  +  G++  C  L +L    
Sbjct: 492 SSRDIVTWNSLINGYAQIGDPYNAIDMFYKLRLSAINPDAGTMVGVVPACALLNDLDQGT 551

Query: 206 QVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLG 265
            +HG ++  GF S+  + ++++D YAKCG                               
Sbjct: 552 CIHGLIVKLGFESDCHVKNALIDMYAKCGS------------------------------ 581

Query: 266 DMESASKLFNEMP-EKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCL 324
            + SA  LFN+    K+ V+W  +IA Y +NG  ++A+  F +M +    PN  TF S L
Sbjct: 582 -LPSAEFLFNKTDFTKDEVTWNVIIAAYMQNGHAKEAISSFHQMRLENFHPNSVTFVSVL 640

Query: 325 CACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENS 384
            A A + + + G   H  +I+  F SNT+V +SLIDMY+KCG L    ++F+  D+K+ +
Sbjct: 641 PAAAYLAAFREGMAFHACIIQMGFLSNTLVGNSLIDMYAKCGQLXYSEKLFNEMDHKD-T 699

Query: 385 MLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFES 444
           + WN M+S    HG+ ++AI LF  M  S V+ D ++   +L+AC H GLV+EG   F S
Sbjct: 700 VSWNAMLSGYAVHGHGDRAIALFSLMQESQVQIDSVSFVSVLSACRHXGLVEEGRKIFHS 759

Query: 445 MTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNID 504
           M+    I P+ EH+AC+++LL +AG  D+ +  ++ MP E D+ +W AL G CR+H N+ 
Sbjct: 760 MSDKYHIKPDLEHYACMVDLLGRAGLFDETLGFIKVMPVEPDAGVWGALLGSCRMHSNVK 819

Query: 505 MGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIE 564
           +G   +D L+   P++ A   +LSSIY+  G+     K R  +N+   KK    SW+E++
Sbjct: 820 LGEVALDHLVKLEPRNPAHFVVLSSIYAQSGRWADAGKARSKMNDLGLKKTPGCSWVELK 879

Query: 565 NKVHAFSVSDSLHPMRDVLYSVLEQLAGQM 594
           NKVHAF V D  HP  + ++ +   L  +M
Sbjct: 880 NKVHAFRVGDKSHPQLESMHLLWNTLLEKM 909



 Score =  186 bits (472), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 135/524 (25%), Positives = 242/524 (46%), Gaps = 85/524 (16%)

Query: 16  PNNCLIQSFLSLISKG-QLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRV 74
           P+  L  S +   ++  Q +EA+     + ++G+     T  F+L+ C  + +L+ G   
Sbjct: 92  PSRILWNSMIRAYTRSKQYNEALEMYYCMVEKGLEPDKYTFTFVLKACTGALNLQEGVWF 151

Query: 75  HLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGM 134
           H                            ++D R +      +++F    ++  Y+ +G 
Sbjct: 152 H---------------------------GEIDRRGL-----ERDVFIGAGLVDMYSKMGD 179

Query: 135 MKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTI 194
           +K AR +FD M +RDVV+WN MI G ++S    E + F++ ++   +  +  S   +   
Sbjct: 180 LKRAREVFDKMPKRDVVAWNAMIAGLSQSEDPCEAVDFFRSMQLVGVEPSSVSLLNLFPG 239

Query: 195 CVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTW 254
             KL  ++L R +HG V    F S   +S+ ++D Y+KCG                    
Sbjct: 240 ICKLSNIELCRSIHGYVFRRDFSS--AVSNGLIDLYSKCG-------------------- 277

Query: 255 TTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIR 314
                      D++ A ++F++M +++ VSW T++AGY  NG   + LELF +M +  +R
Sbjct: 278 -----------DVDVARRVFDQMVDQDDVSWGTMMAGYAHNGCFVEVLELFDKMKLGNVR 326

Query: 315 PNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQV 374
            N+ +  S   A A  + L+ GK++HG  ++    S+ +V + L+ MY+KCG     +Q+
Sbjct: 327 INKVSAVSAFLAAAETIDLEKGKEIHGCALQQRIDSDILVATPLMVMYAKCGETEKAKQL 386

Query: 375 FDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGL 434
           F     ++  + W+ +I+AL Q GY E+A+ LF +M    +KP+++TL  IL AC    L
Sbjct: 387 FWGLQGRD-LVAWSAIIAALVQTGYPEEALSLFQEMQNQKMKPNRVTLMSILPACADLSL 445

Query: 435 VQEG-----LTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYL 489
           ++ G      T    M  DL           L+ + A+ G     +    +M    D   
Sbjct: 446 LKLGKSIHCFTVKADMDSDLST------GTALVSMYAKCGFFTAALTTFNRMS-SRDIVT 498

Query: 490 WNAL-HGVCRI---HGNIDMGRKVVDQLIDQNPQSSATHGLLSS 529
           WN+L +G  +I   +  IDM  K+  +L   NP +    G++ +
Sbjct: 499 WNSLINGYAQIGDPYNAIDMFYKL--RLSAINPDAGTMVGVVPA 540



 Score =  176 bits (447), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 132/521 (25%), Positives = 226/521 (43%), Gaps = 73/521 (14%)

Query: 31  GQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFL 90
           G   E +   D +    +R+   +        AE+  L+ GK +H    L QR      +
Sbjct: 308 GCFVEVLELFDKMKLGNVRINKVSAVSAFLAAAETIDLEKGKEIH-GCALQQRIDSDILV 366

Query: 91  SNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDV 150
           +  L+ MY KCG                                 + A+ LF  +  RD+
Sbjct: 367 ATPLMVMYAKCGE-------------------------------TEKAKQLFWGLQGRDL 395

Query: 151 VSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQ 210
           V+W+ +I    ++G  EE L  ++ ++   +  N  +   IL  C  L  LKL + +H  
Sbjct: 396 VAWSAIIAALVQTGYPEEALSLFQEMQNQKMKPNRVTLMSILPACADLSLLKLGKSIHCF 455

Query: 211 VLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESA 270
            +     S                               D+ T T +VS YAK G   +A
Sbjct: 456 TVKADMDS-------------------------------DLSTGTALVSMYAKCGFFTAA 484

Query: 271 SKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASI 330
              FN M  ++ V+W +LI GY + G    A+++F ++ +  I P+  T    + ACA +
Sbjct: 485 LTTFNRMSSRDIVTWNSLINGYAQIGDPYNAIDMFYKLRLSAINPDAGTMVGVVPACALL 544

Query: 331 VSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTM 390
             L  G  +HG +++  F S+  V ++LIDMY+KCG L     +F+ TD  ++ + WN +
Sbjct: 545 NDLDQGTCIHGLIVKLGFESDCHVKNALIDMYAKCGSLPSAEFLFNKTDFTKDEVTWNVI 604

Query: 391 ISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLG 450
           I+A  Q+G+ ++AI  FH M   +  P+ +T   +L A  +    +EG+  F +    +G
Sbjct: 605 IAAYMQNGHAKEAISSFHQMRLENFHPNSVTFVSVLPAAAYLAAFREGMA-FHACIIQMG 663

Query: 451 IIPNQEHHACLIELLAQAG---CSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGR 507
            + N      LI++ A+ G    S++L N+++      D+  WNA+     +HG+ D  R
Sbjct: 664 FLSNTLVGNSLIDMYAKCGQLXYSEKLFNEMD----HKDTVSWNAMLSGYAVHGHGD--R 717

Query: 508 KVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLIN 548
            +    + Q  Q         S+ SA     LVE+ R++ +
Sbjct: 718 AIALFSLMQESQVQIDSVSFVSVLSACRHXGLVEEGRKIFH 758



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 76/307 (24%), Positives = 148/307 (48%), Gaps = 40/307 (13%)

Query: 120 FSYNNMLSGYANLGMMKH----ARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKV 175
           F +++ ++   NL  + H    AR++FD+      + WN+MI  Y +S    E L+ Y  
Sbjct: 60  FKHHHSITHLINLYSLFHKCDLARSVFDSTPNPSRILWNSMIRAYTRSKQYNEALEMYYC 119

Query: 176 LRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGE 235
           +    +  ++++F  +L  C     L+     HG++   G   +V I + +VD Y+K G+
Sbjct: 120 MVEKGLEPDKYTFTFVLKACTGALNLQEGVWFHGEIDRRGLERDVFIGAGLVDMYSKMGD 179

Query: 236 LSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRN 295
           L  AR +FD+   RDV+ W  M++G ++                ++P             
Sbjct: 180 LKRAREVFDKMPKRDVVAWNAMIAGLSQ---------------SEDPC------------ 212

Query: 296 GLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVM 355
               +A++ F  M ++ + P+  +  +       + +++  + +HG++ R +F S   V 
Sbjct: 213 ----EAVDFFRSMQLVGVEPSSVSLLNLFPGICKLSNIELCRSIHGYVFRRDFSS--AVS 266

Query: 356 SSLIDMYSKCGCLNDGRQVFD-LTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSS 414
           + LID+YSKCG ++  R+VFD + D  + S  W TM++    +G   + + LF  M   +
Sbjct: 267 NGLIDLYSKCGDVDVARRVFDQMVDQDDVS--WGTMMAGYAHNGCFVEVLELFDKMKLGN 324

Query: 415 VKPDKIT 421
           V+ +K++
Sbjct: 325 VRINKVS 331



 Score = 99.0 bits (245), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 83/344 (24%), Positives = 145/344 (42%), Gaps = 71/344 (20%)

Query: 180 SISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDA 239
           S   N   +  +L+ C  L  L    Q+H Q++V+GF  +  I+  +++ Y+   +   A
Sbjct: 27  STYTNYLHYPRLLSSCKHLNPL---LQIHAQIIVSGFKHHHSITH-LINLYSLFHKCDLA 82

Query: 240 RRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQ 299
           R +FD T                               P  + + W ++I  YTR+    
Sbjct: 83  RSVFDST-------------------------------PNPSRILWNSMIRAYTRSKQYN 111

Query: 300 KALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLI 359
           +ALE++  M+   + P+++TF+  L AC   ++L+ G   HG + R     +  + + L+
Sbjct: 112 EALEMYYCMVEKGLEPDKYTFTFVLKACTGALNLQEGVWFHGEIDRRGLERDVFIGAGLV 171

Query: 360 DMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDK 419
           DMYSK G L   R+VFD    K + + WN MI+ L+Q     +A+  F  M    V+P  
Sbjct: 172 DMYSKMGDLKRAREVFDKMP-KRDVVAWNAMIAGLSQSEDPCEAVDFFRSMQLVGVEPSS 230

Query: 420 ITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLE 479
           ++L                L  F  +     I   +  H  +      +  S+ L++   
Sbjct: 231 VSL----------------LNLFPGICKLSNIELCRSIHGYVFRRDFSSAVSNGLID--- 271

Query: 480 KMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSAT 523
                        L+  C   G++D+ R+V DQ++DQ+  S  T
Sbjct: 272 -------------LYSKC---GDVDVARRVFDQMVDQDDVSWGT 299



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 62/288 (21%), Positives = 118/288 (40%), Gaps = 36/288 (12%)

Query: 116 VKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKV 175
           + N    N+++  YA  G + ++  LF+ M  +D VSWN M+ GYA  G  +  +  + +
Sbjct: 665 LSNTLVGNSLIDMYAKCGQLXYSEKLFNEMDHKDTVSWNAMLSGYAVHGHGDRAIALFSL 724

Query: 176 LRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGE 235
           ++   +  +  SF  +L+ C     ++  R++         +S+       ++ YA   +
Sbjct: 725 MQESQVQIDSVSFVSVLSACRHXGLVEEGRKIFHS------MSDKYHIKPDLEHYACMVD 778

Query: 236 LSDARRLFDETDA--------RDVLTWTTMVSGY-----AKLGDMESASKLFNEMPEKNP 282
           L     LFDET           D   W  ++         KLG  E A     ++  +NP
Sbjct: 779 LLGRAGLFDETLGFIKVMPVEPDAGVWGALLGSCRMHSNVKLG--EVALDHLVKLEPRNP 836

Query: 283 VSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGF 342
             +  L + Y ++G    A +  ++M  L ++            C S V LK+  +VH F
Sbjct: 837 AHFVVLSSIYAQSGRWADAGKARSKMNDLGLKKTP--------GC-SWVELKN--KVHAF 885

Query: 343 LI----RTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSML 386
            +         S  ++ ++L++   K G + D   V    + ++  M 
Sbjct: 886 RVGDKSHPQLESMHLLWNTLLEKMEKIGYVPDRSCVLQNVEEEDKEMF 933


>gi|115452665|ref|NP_001049933.1| Os03g0314400 [Oryza sativa Japonica Group]
 gi|108707812|gb|ABF95607.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113548404|dbj|BAF11847.1| Os03g0314400 [Oryza sativa Japonica Group]
 gi|125586044|gb|EAZ26708.1| hypothetical protein OsJ_10614 [Oryza sativa Japonica Group]
          Length = 648

 Score =  309 bits (792), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 171/541 (31%), Positives = 279/541 (51%), Gaps = 34/541 (6%)

Query: 54  TLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDK 113
           T   +   CA  ++++ G++VH H  +        +L+N L+SMY  CG   DARKVFD 
Sbjct: 105 THTILAAACATRRAIEEGRQVHCH-AVRHGFGRNLYLANALMSMYSACGCLGDARKVFDA 163

Query: 114 IPVKNLFSYNNMLSGYANL-------------------------------GMMKHARNLF 142
            PV +  S+N +L+ Y                                  GM+  AR +F
Sbjct: 164 GPVWDAVSWNTILAAYVQAEDVDQAVGVFARMPERGAAAVSSMVSLFGRRGMVDEARKVF 223

Query: 143 DNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELK 202
           D +  +DV +W  MI  + ++G   E L  +  +R      +E     ++  C +LE  +
Sbjct: 224 DVVERKDVFTWTAMISCFQRNGKFAEALALFSDMRGEGWPVDEAVMVCVVAACARLEVTR 283

Query: 203 LTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYA 262
                HG     G  S + + ++++  Y+    +  ARRLFD     D  +W +M++GY 
Sbjct: 284 NGEMCHGLAFRAGLGSRLNVQNALIHMYSSFLNVVAARRLFDSGQCLDQFSWNSMIAGYL 343

Query: 263 KLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSS 322
           K G ++ A +LF  MP+K+ VSWTT+I+G  +N    +AL +F  M    I+P++ T  S
Sbjct: 344 KNGSVKDAKELFTVMPDKDNVSWTTMISGCVQNDQSSEALTIFNNMQAQGIKPDEVTLVS 403

Query: 323 CLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKE 382
            + AC ++ SL+ GK +H ++    +    I+ +SLIDMY KCGCL    +VFD T  + 
Sbjct: 404 VISACTNMSSLEQGKSMHEYIREHQYTITVILGTSLIDMYMKCGCLESALEVFD-TMEER 462

Query: 383 NSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVK-PDKITLAVILNACTHSGLVQEGLTY 441
            +  WN +I  L  +G   +++ +F +M  SS   P++IT   +L+AC H+GLV+EG  +
Sbjct: 463 GTPCWNAVIVGLAMNGLVMKSLDMFSEMESSSTATPNEITFTGVLSACRHAGLVEEGQHF 522

Query: 442 FESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHG 501
           F+ M H   IIPN  H+ C+++LL +AG   +  N +E MP   D   W AL G C  HG
Sbjct: 523 FKLMQHKYHIIPNIRHYGCMVDLLGRAGYVKEAENLIESMPMSPDVPAWGALLGSCWKHG 582

Query: 502 NIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWI 561
           + ++G +V  +L++ +P     H +LS+IY++ G  + V+ +R  + +    K    S +
Sbjct: 583 DNEVGERVGRKLVNLDPHHDGFHTMLSNIYASEGMWQHVKDLRGSMKQWHVPKIPGSSVV 642

Query: 562 E 562
           E
Sbjct: 643 E 643



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 88/387 (22%), Positives = 164/387 (42%), Gaps = 42/387 (10%)

Query: 31  GQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFL 90
           G+ +EA++    +   G  +    +  ++  CA  +  + G+  H  L           +
Sbjct: 245 GKFAEALALFSDMRGEGWPVDEAVMVCVVAACARLEVTRNGEMCH-GLAFRAGLGSRLNV 303

Query: 91  SNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDV 150
            N LI MY    + V AR++FD     + FS+N+M++GY   G +K A+ LF  M ++D 
Sbjct: 304 QNALIHMYSSFLNVVAARRLFDSGQCLDQFSWNSMIAGYLKNGSVKDAKELFTVMPDKDN 363

Query: 151 VSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQ 210
           VSW TMI G  ++    E L  +  ++   I  +E +   +++ C  +  L+  + +H  
Sbjct: 364 VSWTTMISGCVQNDQSSEALTIFNNMQAQGIKPDEVTLVSVISACTNMSSLEQGKSMHEY 423

Query: 211 VLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESA 270
           +    +   V++ +S++D Y KCG L  A  +FD  + R    W  ++ G A        
Sbjct: 424 IREHQYTITVILGTSLIDMYMKCGCLESALEVFDTMEERGTPCWNAVIVGLAM------- 476

Query: 271 SKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRI-RPNQHTFSSCLCACAS 329
                                   NGL  K+L++F+ M       PN+ TF+  L AC  
Sbjct: 477 ------------------------NGLVMKSLDMFSEMESSSTATPNEITFTGVLSACRH 512

Query: 330 IVSLKHGKQV-----HGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENS 384
              ++ G+       H + I  N R        ++D+  + G + +   + +      + 
Sbjct: 513 AGLVEEGQHFFKLMQHKYHIIPNIRH----YGCMVDLLGRAGYVKEAENLIESMPMSPDV 568

Query: 385 MLWNTMISALTQHGYDEQAIRLFHDMV 411
             W  ++ +  +HG +E   R+   +V
Sbjct: 569 PAWGALLGSCWKHGDNEVGERVGRKLV 595



 Score = 73.2 bits (178), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 65/264 (24%), Positives = 108/264 (40%), Gaps = 47/264 (17%)

Query: 28  ISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPT 87
           +   Q SEA++  + +  +GI+    TL  ++  C    SL+ GK +H +++  Q  T T
Sbjct: 374 VQNDQSSEALTIFNNMQAQGIKPDEVTLVSVISACTNMSSLEQGKSMHEYIREHQ-YTIT 432

Query: 88  TFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAE 147
             L   LI MY KCG    A +VF                               D M E
Sbjct: 433 VILGTSLIDMYMKCGCLESALEVF-------------------------------DTMEE 461

Query: 148 RDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISC-NEFSFAGILTICVK---LEE--- 200
           R    WN +I+G A +G V + L  +  +   S +  NE +F G+L+ C     +EE   
Sbjct: 462 RGTPCWNAVIVGLAMNGLVMKSLDMFSEMESSSTATPNEITFTGVLSACRHAGLVEEGQH 521

Query: 201 -LKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETD-ARDVLTWTTMV 258
             KL +  +        + N+     +VD   + G + +A  L +    + DV  W  ++
Sbjct: 522 FFKLMQHKY------HIIPNIRHYGCMVDLLGRAGYVKEAENLIESMPMSPDVPAWGALL 575

Query: 259 SGYAKLGDMESASKLFNEMPEKNP 282
               K GD E   ++  ++   +P
Sbjct: 576 GSCWKHGDNEVGERVGRKLVNLDP 599


>gi|296089800|emb|CBI39619.3| unnamed protein product [Vitis vinifera]
          Length = 640

 Score =  309 bits (792), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 164/479 (34%), Positives = 274/479 (57%), Gaps = 10/479 (2%)

Query: 135 MKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTI 194
           + ++  +FD +   +   WNTM+  Y +S + E+ L  YK++ + ++  + +++  ++  
Sbjct: 79  LDYSLQIFDRIENSNGFMWNTMMRAYIQSNSAEKALLLYKLMVKNNVGPDNYTYPLVVQA 138

Query: 195 C-VKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLT 253
           C V+L E    +++H  VL  GF S+V + +++++ YA CG + DAR+LFDE+   D ++
Sbjct: 139 CAVRLLEFG-GKEIHDHVLKVGFDSDVYVQNTLINMYAVCGNMRDARKLFDESPVLDSVS 197

Query: 254 WTTMVSGYAKLGDME---SASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMI 310
           W ++++GY K GDM     A KLFNEM EK+ VSW+ LI+GY +NG+ ++AL +F  M  
Sbjct: 198 WNSILAGYVKKGDMGQVMEAWKLFNEMDEKDMVSWSALISGYEQNGMYEEALVMFIEMNA 257

Query: 311 LRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLI----DMYSKCG 366
             +R ++    S L ACA +  +K GK +HG +IR    S   + ++LI    DMY KCG
Sbjct: 258 NGMRLDEVVVVSVLSACAHLSIVKTGKMIHGLVIRMGIESYVNLQNALIHMYSDMYMKCG 317

Query: 367 CLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVIL 426
           C+ +  +VF+  + K  S  WN +I  L  +G  E+++ +F +M  + V P++IT   +L
Sbjct: 318 CVENALEVFNGMEEKGVSS-WNALIIGLAVNGLVERSLDMFSEMKNNGVIPNEITFMGVL 376

Query: 427 NACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHD 486
            AC H GLV EG  +F SM    GI PN +H+ C+++LL +AG  ++    +E MP   D
Sbjct: 377 GACRHMGLVDEGRCHFASMIEKHGIEPNVKHYGCMVDLLGRAGLLNEAEKLIESMPMAPD 436

Query: 487 SYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQL 546
              W AL G C+ HG+ +MG +V  +LI+  P     H LLS+I+++ G    V +VR +
Sbjct: 437 VATWGALLGACKKHGDTEMGERVGRKLIELQPDHDGFHVLLSNIFASKGDWEDVLEVRGM 496

Query: 547 INERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQMGEDAPSLDADR 605
           + ++   K    S IE    VH F   D  HP  + +  +L ++A ++  +  + D + 
Sbjct: 497 MKQQGVVKTPGCSLIEANGVVHEFLAGDKTHPWINKVEGMLNEMAKRLKMEGYAPDTNE 555



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 101/410 (24%), Positives = 188/410 (45%), Gaps = 42/410 (10%)

Query: 26  SLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKT 85
           + I      +A+    L+ +  +     T   ++Q CA       GK +H H+ L     
Sbjct: 103 AYIQSNSAEKALLLYKLMVKNNVGPDNYTYPLVVQACAVRLLEFGGKEIHDHV-LKVGFD 161

Query: 86  PTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGY---ANLGMMKHARNLF 142
              ++ N LI+MY  CG+  DARK+FD+ PV +  S+N++L+GY    ++G +  A  LF
Sbjct: 162 SDVYVQNTLINMYAVCGNMRDARKLFDESPVLDSVSWNSILAGYVKKGDMGQVMEAWKLF 221

Query: 143 DNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELK 202
           + M E+D+VSW+ +I GY ++G  EE L  +  +    +  +E     +L+ C  L  +K
Sbjct: 222 NEMDEKDMVSWSALISGYEQNGMYEEALVMFIEMNANGMRLDEVVVVSVLSACAHLSIVK 281

Query: 203 LTRQVHGQVLVTGFLSNVVISSSIV----DAYAKCGELSDARRLFDETDARDVLTWTTMV 258
             + +HG V+  G  S V + ++++    D Y KCG + +A  +F+  + + V +W  ++
Sbjct: 282 TGKMIHGLVIRMGIESYVNLQNALIHMYSDMYMKCGCVENALEVFNGMEEKGVSSWNALI 341

Query: 259 SGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQH 318
            G A                                NGL +++L++F+ M    + PN+ 
Sbjct: 342 IGLA-------------------------------VNGLVERSLDMFSEMKNNGVIPNEI 370

Query: 319 TFSSCLCACASIVSLKHGKQVHGFLI-RTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDL 377
           TF   L AC  +  +  G+     +I +     N      ++D+  + G LN+  ++ + 
Sbjct: 371 TFMGVLGACRHMGLVDEGRCHFASMIEKHGIEPNVKHYGCMVDLLGRAGLLNEAEKLIES 430

Query: 378 TDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILN 427
                +   W  ++ A  +HG  E   R+   ++   ++PD     V+L+
Sbjct: 431 MPMAPDVATWGALLGACKKHGDTEMGERVGRKLIE--LQPDHDGFHVLLS 478


>gi|449457327|ref|XP_004146400.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g49710-like [Cucumis sativus]
          Length = 720

 Score =  309 bits (792), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 188/607 (30%), Positives = 308/607 (50%), Gaps = 78/607 (12%)

Query: 58  ILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVK 117
            L+ C   + L+ GK +H  L +      +T+LSNH + +Y KC     AR+VFD     
Sbjct: 14  FLKTCIAHRDLRTGKSLHA-LYIKSFVPTSTYLSNHFLLLYSKCRRLSAARRVFDHTHDC 72

Query: 118 NLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLR 177
           N+FS+N ++S YA    ++ A  LFD M + D VS+NT+I  YA+ G  +   + +  +R
Sbjct: 73  NVFSFNTLISAYAKESYVEVAHQLFDEMPQPDSVSYNTLIAAYARRGDTQPAFQLFLEMR 132

Query: 178 RFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGF-----LSNVVISS-------- 224
              +  + F+ +GI+T C     + L RQ+H   +VTG      + N +I+S        
Sbjct: 133 EAFLDMDGFTLSGIITACGI--NVGLIRQLHALSVVTGLDSYVSVGNALITSYSKNGFLK 190

Query: 225 -------------------SIVDAYAKCGELSDARRLFDETDAR----DVLTWTTMVSGY 261
                              S+V AY +  E S A  L+ E   R    D+ T  ++++ +
Sbjct: 191 EARRIFHWLSEDRDEVSWNSMVVAYMQHREGSKALELYLEMTVRGLIVDIFTLASVLTAF 250

Query: 262 -------------AKL-----------------------GDMESASKLFNEMPEKNPVSW 285
                        AKL                       G M    K+F+E+   + V W
Sbjct: 251 TNVQDLLGGLQFHAKLIKSGYHQNSHVGSGLIDLYSKCGGCMLDCRKVFDEISNPDLVLW 310

Query: 286 TTLIAGYT-RNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLI 344
            T+I+GY+    L  +ALE F ++ ++  RP+  +    + AC+++ S   G+QVHG  +
Sbjct: 311 NTMISGYSLYEDLSDEALECFRQLQVVGHRPDDCSLVCVISACSNMSSPSQGRQVHGLAL 370

Query: 345 RTNFRSNTI-VMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQA 403
           + +  SN I V ++LI MYSKCG L D + +FD T  + N++ +N+MI+   QHG   Q+
Sbjct: 371 KLDIPSNRISVNNALIAMYSKCGNLRDAKTLFD-TMPEHNTVSYNSMIAGYAQHGMGFQS 429

Query: 404 IRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIE 463
           + LF  M+     P  IT   +L AC H+G V++G  YF  M    GI P   H +C+I+
Sbjct: 430 LHLFQRMLEMGFTPTNITFISVLAACAHTGRVEDGKIYFNMMKQKFGIEPEAGHFSCMID 489

Query: 464 LLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSAT 523
           LL +AG   +    +E +P++   + W+AL G CRIHGN+++  K  ++L+  +P ++A 
Sbjct: 490 LLGRAGKLSEAERLIETIPFDPGFFFWSALLGACRIHGNVELAIKAANRLLQLDPLNAAP 549

Query: 524 HGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVL 583
           + +L++IYS  G+ +    VR+L+ +R  KK+   SWIE+  ++H F   D+ HPM   +
Sbjct: 550 YVMLANIYSDNGRLQDAASVRKLMRDRGVKKKPGCSWIEVNRRIHIFVAEDTFHPMIKKI 609

Query: 584 YSVLEQL 590
              LE++
Sbjct: 610 QEYLEEM 616



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 93/308 (30%), Positives = 153/308 (49%), Gaps = 5/308 (1%)

Query: 187 SFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDET 246
           +F   L  C+   +L+  + +H   + +   ++  +S+  +  Y+KC  LS ARR+FD T
Sbjct: 10  NFRQFLKTCIAHRDLRTGKSLHALYIKSFVPTSTYLSNHFLLLYSKCRRLSAARRVFDHT 69

Query: 247 DARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFT 306
              +V ++ T++S YAK   +E A +LF+EMP+ + VS+ TLIA Y R G  Q A +LF 
Sbjct: 70  HDCNVFSFNTLISAYAKESYVEVAHQLFDEMPQPDSVSYNTLIAAYARRGDTQPAFQLFL 129

Query: 307 RMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCG 366
            M    +  +  T S  + AC   V L   +Q+H   + T   S   V ++LI  YSK G
Sbjct: 130 EMREAFLDMDGFTLSGIITACGINVGLI--RQLHALSVVTGLDSYVSVGNALITSYSKNG 187

Query: 367 CLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVIL 426
            L + R++F       + + WN+M+ A  QH    +A+ L+ +M    +  D  TLA +L
Sbjct: 188 FLKEARRIFHWLSEDRDEVSWNSMVVAYMQHREGSKALELYLEMTVRGLIVDIFTLASVL 247

Query: 427 NACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQ-AGCSDQLMNQLEKMPYEH 485
            A T+   +  GL +   +    G   N    + LI+L ++  GC        +++    
Sbjct: 248 TAFTNVQDLLGGLQFHAKLIKS-GYHQNSHVGSGLIDLYSKCGGCMLDCRKVFDEIS-NP 305

Query: 486 DSYLWNAL 493
           D  LWN +
Sbjct: 306 DLVLWNTM 313



 Score = 60.5 bits (145), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 39/128 (30%), Positives = 63/128 (49%), Gaps = 5/128 (3%)

Query: 318 HTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDL 377
           H F   L  C +   L+ GK +H   I++   ++T + +  + +YSKC  L+  R+VFD 
Sbjct: 9   HNFRQFLKTCIAHRDLRTGKSLHALYIKSFVPTSTYLSNHFLLLYSKCRRLSAARRVFDH 68

Query: 378 TDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQE 437
           T +  N   +NT+ISA  +  Y E A +LF +M     +PD ++   ++ A    G  Q 
Sbjct: 69  THDC-NVFSFNTLISAYAKESYVEVAHQLFDEM----PQPDSVSYNTLIAAYARRGDTQP 123

Query: 438 GLTYFESM 445
               F  M
Sbjct: 124 AFQLFLEM 131


>gi|345505208|gb|AEN99828.1| chlororespiratory reduction 4 [Arabis hirsuta]
          Length = 615

 Score =  309 bits (792), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 178/534 (33%), Positives = 289/534 (54%), Gaps = 43/534 (8%)

Query: 42  LLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKC 101
           L+ + G+ +   +L+ +L+ C+    +K G + H  L+ T   +   FL N LI +Y KC
Sbjct: 113 LMLKNGVSVDKFSLSLVLKACSRLGFVKEGMQXHGFLRKTGIWS-DLFLQNCLIGLYLKC 171

Query: 102 GSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMA--ERDVVSWNTMIIG 159
           G    AR+VFD++  ++  SYN+M+ GY   G+++ AR LFD M   +++++SWN+MI G
Sbjct: 172 GCLGFARQVFDRMSQRDSVSYNSMIDGYVKCGLIESARELFDLMPSEKKNLISWNSMING 231

Query: 160 YAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSN 219
           YA+     +G+          I+ N F          ++ E                  +
Sbjct: 232 YAQRA---DGV---------DIASNLFD---------EMPE-----------------KD 253

Query: 220 VVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPE 279
           ++  +S++D Y K G + DA+ LFD+   RDV+TW TMV GYAKLG +  A  LF++MP+
Sbjct: 254 LISWNSLIDGYVKHGRIEDAKDLFDKMPRRDVVTWATMVDGYAKLGFVHQAKSLFDQMPQ 313

Query: 280 KNPVSWTTLIAGYTRNGLGQKALELFTRM-MILRIRPNQHTFSSCLCACASIVSLKHGKQ 338
           ++ V++ +++AGY +N    +A+++F  M     + P++ T    L A A +  L     
Sbjct: 314 RDVVAYNSMMAGYVQNRYHMEAIDIFNDMEKESHLSPDETTLVIVLSAIAQLGRLSKAMD 373

Query: 339 VHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHG 398
           +H + +   F     +  +LIDMYSKCG +     VF+  +NK     WN MI  L  HG
Sbjct: 374 MHLYTVEKKFLLGGKLGVALIDMYSKCGSIQQAMGVFERIENKSIDH-WNAMIGGLAIHG 432

Query: 399 YDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHH 458
             E A  +   + R S+KPD IT   +LNAC+HSGLV+EGL  FE M     I P  +H+
Sbjct: 433 LGESAFDMLLQIERRSIKPDDITFVGVLNACSHSGLVKEGLLCFELMKRKHKIEPRLQHY 492

Query: 459 ACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNP 518
            C++++L+++G  +   N +E+MP E +  +W      C  H   + G  V   LI Q  
Sbjct: 493 GCMVDILSRSGRIELAKNLIEEMPIEPNDVIWRTFLTACSHHKEFETGELVAKHLILQAG 552

Query: 519 QSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSV 572
            + +++ LLS++Y++LG  + V +VR ++ ER+ +K    SWIE++  VH F V
Sbjct: 553 YNPSSYVLLSNMYASLGMWKEVRRVRTMMKERKIQKIPGCSWIELDGSVHEFFV 606



 Score =  142 bits (359), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 101/373 (27%), Positives = 190/373 (50%), Gaps = 24/373 (6%)

Query: 149 DVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVH 208
           D   WN +I  ++      + L  + ++ +  +S ++FS + +L  C +L  +K   Q H
Sbjct: 87  DPFLWNAVIKSHSHGVEPRKALLLFFLMLKNGVSVDKFSLSLVLKACSRLGFVKEGMQXH 146

Query: 209 GQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDME 268
           G +  TG  S++ + + ++  Y KCG L  AR++FD    RD +++ +M+ GY K G +E
Sbjct: 147 GFLRKTGIWSDLFLQNCLIGLYLKCGCLGFARQVFDRMSQRDSVSYNSMIDGYVKCGLIE 206

Query: 269 SASKLFNEMP--EKNPVSWTTLIAGYTRNGLGQK-ALELFTRMMILRIRPNQHTFSSCLC 325
           SA +LF+ MP  +KN +SW ++I GY +   G   A  LF  M      P +      L 
Sbjct: 207 SARELFDLMPSEKKNLISWNSMINGYAQRADGVDIASNLFDEM------PEKD-----LI 255

Query: 326 ACASIVS--LKHGK-QVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKE 382
           +  S++   +KHG+ +    L     R + +  ++++D Y+K G ++  + +FD    ++
Sbjct: 256 SWNSLIDGYVKHGRIEDAKDLFDKMPRRDVVTWATMVDGYAKLGFVHQAKSLFDQMPQRD 315

Query: 383 NSMLWNTMISALTQHGYDEQAIRLFHDMVRSS-VKPDKITLAVILNACTHSGLVQEGLTY 441
             + +N+M++   Q+ Y  +AI +F+DM + S + PD+ TL ++L+A    G + + +  
Sbjct: 316 -VVAYNSMMAGYVQNRYHMEAIDIFNDMEKESHLSPDETTLVIVLSAIAQLGRLSKAMD- 373

Query: 442 FESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHG 501
               T +   +   +    LI++ ++ G   Q M   E++  +   + WNA+ G   IHG
Sbjct: 374 MHLYTVEKKFLLGGKLGVALIDMYSKCGSIQQAMGVFERIENKSIDH-WNAMIGGLAIHG 432

Query: 502 NIDMGRKVVDQLI 514
              +G    D L+
Sbjct: 433 ---LGESAFDMLL 442



 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 99/405 (24%), Positives = 171/405 (42%), Gaps = 71/405 (17%)

Query: 206 QVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLG 265
           ++H +   TGF+ N  +++ IV A+A       +RR +    AR V     + S  +  G
Sbjct: 32  KIHARKGTTGFIKNTNLTTRIVLAFAA------SRRSYLAEFARCVFHEYHVSSXXS--G 83

Query: 266 DMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLC 325
           ++E            +P  W  +I  ++     +KAL LF  M+   +  ++ + S  L 
Sbjct: 84  NVE------------DPFLWNAVIKSHSHGVEPRKALLLFFLMLKNGVSVDKFSLSLVLK 131

Query: 326 ACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSM 385
           AC+ +  +K G Q HGFL +T   S+  + + LI +Y KCGCL   RQVFD    ++ S+
Sbjct: 132 ACSRLGFVKEGMQXHGFLRKTGIWSDLFLQNCLIGLYLKCGCLGFARQVFDRMSQRD-SV 190

Query: 386 LWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESM 445
            +N+MI    + G  E A  LF  M   S K + I+   ++N     G  Q         
Sbjct: 191 SYNSMIDGYVKCGLIESARELFDLM--PSEKKNLISWNSMIN-----GYAQ--------- 234

Query: 446 THDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDM 505
                                +A   D   N  ++MP E D   WN+L      HG I+ 
Sbjct: 235 ---------------------RADGVDIASNLFDEMP-EKDLISWNSLIDGYVKHGRIED 272

Query: 506 GRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIEN 565
            + + D++  ++  + AT   +   Y+ LG     + +   + +R      ++    ++N
Sbjct: 273 AKDLFDKMPRRDVVTWAT---MVDGYAKLGFVHQAKSLFDQMPQRDVVAYNSMMAGYVQN 329

Query: 566 KVHAFSV--------SDSLHPMRDVLYSVLEQLAGQMGEDAPSLD 602
           + H  ++           L P    L  VL  +A Q+G  + ++D
Sbjct: 330 RYHMEAIDIFNDMEKESHLSPDETTLVIVLSAIA-QLGRLSKAMD 373



 Score = 56.2 bits (134), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 47/193 (24%), Positives = 88/193 (45%), Gaps = 9/193 (4%)

Query: 325 CACASIVSLKHGKQ-VHGFLIRTNFRSNTIVM-----SSLIDMYSKCGCLNDGRQVFDLT 378
           C  +  VS  H ++   GF+  TN  +  ++       S +  +++C   ++       +
Sbjct: 24  CKTSEDVSKIHARKGTTGFIKNTNLTTRIVLAFAASRRSYLAEFARC-VFHEYHVSSXXS 82

Query: 379 DNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEG 438
            N E+  LWN +I + +      +A+ LF  M+++ V  DK +L+++L AC+  G V+EG
Sbjct: 83  GNVEDPFLWNAVIKSHSHGVEPRKALLLFFLMLKNGVSVDKFSLSLVLKACSRLGFVKEG 142

Query: 439 LTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCR 498
           +          GI  +     CLI L  + GC        ++M  + DS  +N++     
Sbjct: 143 MQX-HGFLRKTGIWSDLFLQNCLIGLYLKCGCLGFARQVFDRMS-QRDSVSYNSMIDGYV 200

Query: 499 IHGNIDMGRKVVD 511
             G I+  R++ D
Sbjct: 201 KCGLIESARELFD 213


>gi|297798134|ref|XP_002866951.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297312787|gb|EFH43210.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 630

 Score =  309 bits (792), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 171/487 (35%), Positives = 278/487 (57%), Gaps = 11/487 (2%)

Query: 110 VFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEG 169
           +  + PV NL     +   YA+ G ++H+  LF    + D+  +   I   + +G  ++ 
Sbjct: 57  IHPRYPVLNL----KLHRAYASHGKIRHSLALFHQTIDPDLFLFTAAINTASINGLKDQA 112

Query: 170 LKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDA 229
              Y  L    I+ NEF+F+ IL  C      K  + +H  VL  G   +  +++ +VD 
Sbjct: 113 FLLYVQLLSSQINPNEFTFSSILKSC----STKSGKLIHTHVLKFGLGLDPYVATGLVDI 168

Query: 230 YAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLI 289
           YAK G++  A+++FD    R +++ T M++ YAK G++E+A  LF+ M E++ VSW  +I
Sbjct: 169 YAKGGDVVSAQKVFDRMPERSLVSSTAMITCYAKQGNVEAARALFDRMCERDIVSWNVMI 228

Query: 290 AGYTRNGLGQKALELFTRMMI-LRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNF 348
            GY+++G    AL LF +++   + +P++ T  + L AC+ I +L+ G+ +H F+  +  
Sbjct: 229 DGYSQHGFPSDALMLFQKLLADGKPKPDEITVVAALSACSQIGALETGRWIHVFVNSSRI 288

Query: 349 RSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFH 408
           R N  V ++LIDMYSKCG L +   VF+ T  K+  + WN MI+    HGY + A+RLF 
Sbjct: 289 RLNVKVCTALIDMYSKCGSLEEAVLVFNDTPRKD-IVAWNAMITGYAMHGYSQDALRLFD 347

Query: 409 DMVR-SSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQ 467
           +M   + ++P  IT    L AC H+GLV EG+  FESM  + GI P  EH+ CL+ LL +
Sbjct: 348 EMQGITGLQPTDITFIGTLQACAHAGLVNEGIQIFESMGQEYGIKPKIEHYGCLVSLLGR 407

Query: 468 AGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLL 527
           AG   +    ++ M  E DS LW+++ G C++HG   +G+++ + LI QN  +S  + LL
Sbjct: 408 AGQLKRAYEIIKNMNMEADSVLWSSVLGSCKLHGEFMLGKEIAEYLIGQNISNSGIYVLL 467

Query: 528 SSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVL 587
           S+IY+ +G    V KVR L+ E+   KE  IS IEI+NKVH F   D  H     +Y++L
Sbjct: 468 SNIYALVGDYEGVAKVRNLMKEKGIVKEPGISTIEIDNKVHEFRAGDREHLKSKEIYTML 527

Query: 588 EQLAGQM 594
            +++ ++
Sbjct: 528 RKMSERI 534



 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 100/348 (28%), Positives = 169/348 (48%), Gaps = 39/348 (11%)

Query: 54  TLAFILQQCAESKSLKLGKRVHLH-LKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFD 112
           T + IL+ C    S K GK +H H LK      P  +++  L+ +Y K G  V A+KVFD
Sbjct: 130 TFSSILKSC----STKSGKLIHTHVLKFGLGLDP--YVATGLVDIYAKGGDVVSAQKVFD 183

Query: 113 KIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLK- 171
           ++P ++L S   M++ YA  G ++ AR LFD M ERD+VSWN MI GY++ G   + L  
Sbjct: 184 RMPERSLVSSTAMITCYAKQGNVEAARALFDRMCERDIVSWNVMIDGYSQHGFPSDALML 243

Query: 172 FYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYA 231
           F K+L       +E +    L+ C ++  L+  R +H  V  +    NV + ++++D Y+
Sbjct: 244 FQKLLADGKPKPDEITVVAALSACSQIGALETGRWIHVFVNSSRIRLNVKVCTALIDMYS 303

Query: 232 KCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAG 291
           KCG L +A  +F++T  +D++ W  M++GYA  G  + A +LF+EM              
Sbjct: 304 KCGSLEEAVLVFNDTPRKDIVAWNAMITGYAMHGYSQDALRLFDEM-------------- 349

Query: 292 YTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRT-NFRS 350
                             I  ++P   TF   L ACA    +  G Q+   + +    + 
Sbjct: 350 ----------------QGITGLQPTDITFIGTLQACAHAGLVNEGIQIFESMGQEYGIKP 393

Query: 351 NTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHG 398
                  L+ +  + G L    ++    + + +S+LW++++ +   HG
Sbjct: 394 KIEHYGCLVSLLGRAGQLKRAYEIIKNMNMEADSVLWSSVLGSCKLHG 441


>gi|15235537|ref|NP_195454.1| Tetratricopeptide repeat (TPR)-like superfamily protein
           [Arabidopsis thaliana]
 gi|75213666|sp|Q9SZT8.1|PP354_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g37380, chloroplastic; Flags: Precursor
 gi|4468804|emb|CAB38205.1| putative protein [Arabidopsis thaliana]
 gi|7270720|emb|CAB80403.1| putative protein [Arabidopsis thaliana]
 gi|332661386|gb|AEE86786.1| Tetratricopeptide repeat (TPR)-like superfamily protein
           [Arabidopsis thaliana]
          Length = 632

 Score =  309 bits (792), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 169/481 (35%), Positives = 276/481 (57%), Gaps = 11/481 (2%)

Query: 113 KIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKF 172
           + PV NL     +   YA+ G ++H+  LF    + D+  +   I   + +G  ++    
Sbjct: 62  RYPVLNL----KLHRAYASHGKIRHSLALFHQTIDPDLFLFTAAINTASINGLKDQAFLL 117

Query: 173 YKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAK 232
           Y  L    I+ NEF+F+ +L  C      K  + +H  VL  G   +  +++ +VD YAK
Sbjct: 118 YVQLLSSEINPNEFTFSSLLKSC----STKSGKLIHTHVLKFGLGIDPYVATGLVDVYAK 173

Query: 233 CGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGY 292
            G++  A+++FD    R +++ T M++ YAK G++E+A  LF+ M E++ VSW  +I GY
Sbjct: 174 GGDVVSAQKVFDRMPERSLVSSTAMITCYAKQGNVEAARALFDSMCERDIVSWNVMIDGY 233

Query: 293 TRNGLGQKALELFTRMMIL-RIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSN 351
            ++G    AL LF +++   + +P++ T  + L AC+ I +L+ G+ +H F+  +  R N
Sbjct: 234 AQHGFPNDALMLFQKLLAEGKPKPDEITVVAALSACSQIGALETGRWIHVFVKSSRIRLN 293

Query: 352 TIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMV 411
             V + LIDMYSKCG L +   VF+ T  K+  + WN MI+    HGY + A+RLF++M 
Sbjct: 294 VKVCTGLIDMYSKCGSLEEAVLVFNDTPRKD-IVAWNAMIAGYAMHGYSQDALRLFNEMQ 352

Query: 412 R-SSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGC 470
             + ++P  IT    L AC H+GLV EG+  FESM  + GI P  EH+ CL+ LL +AG 
Sbjct: 353 GITGLQPTDITFIGTLQACAHAGLVNEGIRIFESMGQEYGIKPKIEHYGCLVSLLGRAGQ 412

Query: 471 SDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSI 530
             +    ++ M  + DS LW+++ G C++HG+  +G+++ + LI  N ++S  + LLS+I
Sbjct: 413 LKRAYETIKNMNMDADSVLWSSVLGSCKLHGDFVLGKEIAEYLIGLNIKNSGIYVLLSNI 472

Query: 531 YSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQL 590
           Y+++G    V KVR L+ E+   KE  IS IEIENKVH F   D  H     +Y++L ++
Sbjct: 473 YASVGDYEGVAKVRNLMKEKGIVKEPGISTIEIENKVHEFRAGDREHSKSKEIYTMLRKI 532

Query: 591 A 591
           +
Sbjct: 533 S 533



 Score =  149 bits (376), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 100/348 (28%), Positives = 167/348 (47%), Gaps = 39/348 (11%)

Query: 54  TLAFILQQCAESKSLKLGKRVHLH-LKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFD 112
           T + +L+ C    S K GK +H H LK      P  +++  L+ +Y K G  V A+KVFD
Sbjct: 132 TFSSLLKSC----STKSGKLIHTHVLKFGLGIDP--YVATGLVDVYAKGGDVVSAQKVFD 185

Query: 113 KIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLK- 171
           ++P ++L S   M++ YA  G ++ AR LFD+M ERD+VSWN MI GYA+ G   + L  
Sbjct: 186 RMPERSLVSSTAMITCYAKQGNVEAARALFDSMCERDIVSWNVMIDGYAQHGFPNDALML 245

Query: 172 FYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYA 231
           F K+L       +E +    L+ C ++  L+  R +H  V  +    NV + + ++D Y+
Sbjct: 246 FQKLLAEGKPKPDEITVVAALSACSQIGALETGRWIHVFVKSSRIRLNVKVCTGLIDMYS 305

Query: 232 KCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAG 291
           KCG L +A  +F++T  +D++ W  M++GYA  G  + A +LFNEM              
Sbjct: 306 KCGSLEEAVLVFNDTPRKDIVAWNAMIAGYAMHGYSQDALRLFNEM-------------- 351

Query: 292 YTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRT-NFRS 350
                             I  ++P   TF   L ACA    +  G ++   + +    + 
Sbjct: 352 ----------------QGITGLQPTDITFIGTLQACAHAGLVNEGIRIFESMGQEYGIKP 395

Query: 351 NTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHG 398
                  L+ +  + G L    +     +   +S+LW++++ +   HG
Sbjct: 396 KIEHYGCLVSLLGRAGQLKRAYETIKNMNMDADSVLWSSVLGSCKLHG 443



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 57/251 (22%), Positives = 122/251 (48%), Gaps = 13/251 (5%)

Query: 42  LLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKC 101
           LLA+   +    T+   L  C++  +L+ G+ +H+ +K + R      +   LI MY KC
Sbjct: 249 LLAEGKPKPDEITVVAALSACSQIGALETGRWIHVFVK-SSRIRLNVKVCTGLIDMYSKC 307

Query: 102 GSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMA-----ERDVVSWNTM 156
           GS  +A  VF+  P K++ ++N M++GYA  G  + A  LF+ M      +   +++   
Sbjct: 308 GSLEEAVLVFNDTPRKDIVAWNAMIAGYAMHGYSQDALRLFNEMQGITGLQPTDITFIGT 367

Query: 157 IIGYAKSGAVEEGLKFYKVL-RRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTG 215
           +   A +G V EG++ ++ + + + I      +  ++++  +  +LK   + +  +    
Sbjct: 368 LQACAHAGLVNEGIRIFESMGQEYGIKPKIEHYGCLVSLLGRAGQLK---RAYETIKNMN 424

Query: 216 FLSNVVISSSIVDAYAKCGELSDARRLFD---ETDARDVLTWTTMVSGYAKLGDMESASK 272
             ++ V+ SS++ +    G+    + + +     + ++   +  + + YA +GD E  +K
Sbjct: 425 MDADSVLWSSVLGSCKLHGDFVLGKEIAEYLIGLNIKNSGIYVLLSNIYASVGDYEGVAK 484

Query: 273 LFNEMPEKNPV 283
           + N M EK  V
Sbjct: 485 VRNLMKEKGIV 495


>gi|218193985|gb|EEC76412.1| hypothetical protein OsI_14066 [Oryza sativa Indica Group]
          Length = 628

 Score =  309 bits (792), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 172/581 (29%), Positives = 292/581 (50%), Gaps = 42/581 (7%)

Query: 24  FLSLISKGQLSEAISSLDLLAQRGIRL--PAETLAFILQQCAESKSLKLGKRVHLHLKLT 81
           F+ L + G+L +A+        RG+     A   + + + C   ++L+  +++H     T
Sbjct: 18  FVRLCATGRLRDALRR----PFRGVLWSDAARLFSHLFRAC---RALRPLRQLHA-FAAT 69

Query: 82  QRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNL 141
                  F +NHL+  Y   G    AR++F++IP +N+ S+N +  GY   G +  AR L
Sbjct: 70  SGAATDRFTANHLMLAYADLGDLTAARELFERIPRRNVMSWNILFGGYIKNGDLGGARKL 129

Query: 142 FDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEEL 201
           FD M ER+V +WN M+ G    G  EE L  +  +RR  +  +EF    +   C  L ++
Sbjct: 130 FDEMPERNVATWNAMVAGLTNLGFDEESLGLFLDMRREGMHPDEFGLGSVSRCCAGLRDV 189

Query: 202 KLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGY 261
              RQVH  V+ +G   ++ + SS+   Y +CG L                         
Sbjct: 190 VTGRQVHAYVVRSGLDRDMCVGSSLAHMYMRCGCL------------------------- 224

Query: 262 AKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFS 321
                 +    +   +P  + VS  T+IAG T+NG  + ALE F  M  + +  +  TF 
Sbjct: 225 ------QEGEAVLRMLPSLSIVSCNTIIAGRTQNGDSEGALEYFCMMRSVGVAADVVTFV 278

Query: 322 SCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNK 381
           S + +C+ + +L  G+Q+HG +++        VM+ L+ MYS+CGCL D  +VF      
Sbjct: 279 SAISSCSDLAALAQGQQIHGQVMKAGVDKVVPVMTCLVHMYSRCGCLGDSERVF-FGYCG 337

Query: 382 ENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTY 441
            ++ L + MISA   HG+ ++AI LF  M+    +P  +T   +L AC+HSGL +EG+  
Sbjct: 338 SDTFLLSAMISAYGFHGHGQKAIELFKQMMNGGAEPSDVTFLALLYACSHSGLKEEGMDC 397

Query: 442 FESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHG 501
           FE MT   GI P+ +H+ C+++LL ++GC D+    +  MP   D  +W  L   C+   
Sbjct: 398 FELMTKTYGIQPSVKHYTCVVDLLGRSGCLDEAEALILSMPLTPDGVIWKTLLSACKTQK 457

Query: 502 NIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWI 561
           N DM  ++  ++I+ +P  SA++ LLS+I +   +   V +VR+ + +   +KE  +SW+
Sbjct: 458 NFDMAERIAKRVIELDPHDSASYVLLSNIRATSRRWGDVSEVRKAMRDNNVRKEPGVSWV 517

Query: 562 EIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQMGEDAPSLD 602
           E++  +H F   D  HP +  +   LE++  ++ +   S D
Sbjct: 518 ELKGHIHQFCTGDESHPRQKEIDECLEEMMAKIRQCGYSPD 558



 Score = 44.7 bits (104), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 36/173 (20%), Positives = 80/173 (46%), Gaps = 8/173 (4%)

Query: 13  KNLPNNCLIQSFLSLISKGQLSEAISSLDLLAQ-RGIRLPAETLAFI--LQQCAESKSLK 69
           + LP+  ++     +  + Q  ++  +L+     R + + A+ + F+  +  C++  +L 
Sbjct: 232 RMLPSLSIVSCNTIIAGRTQNGDSEGALEYFCMMRSVGVAADVVTFVSAISSCSDLAALA 291

Query: 70  LGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGY 129
            G+++H  +           ++  L+ MY +CG   D+ +VF      + F  + M+S Y
Sbjct: 292 QGQQIHGQVMKAGVDKVVPVMTC-LVHMYSRCGCLGDSERVFFGYCGSDTFLLSAMISAY 350

Query: 130 ANLGMMKHARNLFDNM----AERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRR 178
              G  + A  LF  M    AE   V++  ++   + SG  EEG+  ++++ +
Sbjct: 351 GFHGHGQKAIELFKQMMNGGAEPSDVTFLALLYACSHSGLKEEGMDCFELMTK 403


>gi|297744236|emb|CBI37206.3| unnamed protein product [Vitis vinifera]
          Length = 664

 Score =  309 bits (791), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 166/559 (29%), Positives = 305/559 (54%), Gaps = 25/559 (4%)

Query: 31  GQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFL 90
           G+LS+A    + + +R +      +++    C  + + ++G+   L   + +R   +   
Sbjct: 121 GRLSDACRFFEEMPERNV------VSWTSLLCGLANAGRIGEARELFNVMPERNVVSW-- 172

Query: 91  SNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDV 150
            N ++    + G   +AR+VF+++PVK+  S+N M++GYA    M+ AR LFD M +R+V
Sbjct: 173 -NSMLVGLIRSGQLEEARRVFNEMPVKSQVSWNVMIAGYAEHSRMEEARVLFDGMGDRNV 231

Query: 151 VSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQ 210
           V+W +MI GY ++G V+EG   ++ +   ++        G        E L         
Sbjct: 232 VTWTSMISGYCRAGNVQEGYCLFQKMPERNVVSWTAMIGGFAWNGFYKEAL--------- 282

Query: 211 VLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESA 270
                   N    +S+++ Y + G+L  A+ LFD    RD ++WT+M++GY  +G +  A
Sbjct: 283 ---NSMSYNTQSCNSMINGYIRIGQLEKAQSLFDTIPVRDKISWTSMINGYFNVGQIAKA 339

Query: 271 SKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASI 330
             LFN MP+++ V+WT +++G+ +N L  +A  LF+ M +  + P   TFS  L A  ++
Sbjct: 340 CYLFNNMPDRDAVAWTVMVSGHVQNELFAEATYLFSEMRVKGVSPLNSTFSILLGAAGAM 399

Query: 331 VSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTM 390
             L  G+Q H  L++T F  + I+ +SLI MY+KCG + D   +F    +++  + WN+M
Sbjct: 400 AYLDQGRQFHCLLMKTQFEFDLILQNSLISMYAKCGEIGDAYSIFSKMISRD-LISWNSM 458

Query: 391 ISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLG 450
           I   + HG   +A+++F  M+ S   P+ +T   IL+AC+H+GL+ +G   F++M+    
Sbjct: 459 IMGFSHHGLTSEALKVFEAMLTSGTHPNSVTFLGILSACSHAGLLNQGWELFDAMSDVFA 518

Query: 451 IIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMG--RK 508
           I P  EH+ C++ LL +AG  ++    + K+P+E D  +W AL GVC   G I+ G  R+
Sbjct: 519 IQPQLEHYVCMVNLLGRAGKVEEAEEFISKLPFEPDLTIWGALLGVCGF-GMINTGVARR 577

Query: 509 VVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVH 568
              +L++ +P ++  H +L +I++++G+     ++R+ +  +  +K    SWI ++ + +
Sbjct: 578 AAKRLLELDPLNAPAHVVLCNIHASIGQRAEEGQLRKEMGLKGVRKVPGCSWILLKGEPY 637

Query: 569 AFSVSDSLHPMRDVLYSVL 587
            F   D +HP  D + S+L
Sbjct: 638 VFLSGDRIHPQADEMLSLL 656



 Score =  102 bits (253), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 64/274 (23%), Positives = 125/274 (45%), Gaps = 52/274 (18%)

Query: 135 MKHARNLFDNMAERDV----VSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAG 190
           ++ AR++ D M  R V    V W +++  ++K+G ++E    ++++              
Sbjct: 57  LREARHMLDEMPNRGVLDRVVCWTSLLSKFSKNGFIDEARALFEIMPE------------ 104

Query: 191 ILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARD 250
                                       NVV  ++++  Y +CG LSDA R F+E   R+
Sbjct: 105 ---------------------------RNVVTYNAMLSGYVQCGRLSDACRFFEEMPERN 137

Query: 251 VLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMI 310
           V++WT+++ G A  G +  A +LFN MPE+N VSW +++ G  R+G  ++A  +F  M +
Sbjct: 138 VVSWTSLLCGLANAGRIGEARELFNVMPERNVVSWNSMLVGLIRSGQLEEARRVFNEMPV 197

Query: 311 LRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLND 370
                +Q +++  +   A    ++  +     L       N +  +S+I  Y + G + +
Sbjct: 198 ----KSQVSWNVMIAGYAEHSRMEEAR----VLFDGMGDRNVVTWTSMISGYCRAGNVQE 249

Query: 371 GRQVFDLTDNKENSMLWNTMISALTQHGYDEQAI 404
           G  +F     + N + W  MI     +G+ ++A+
Sbjct: 250 GYCLFQKMPER-NVVSWTAMIGGFAWNGFYKEAL 282



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 69/251 (27%), Positives = 115/251 (45%), Gaps = 44/251 (17%)

Query: 195 CVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTW 254
           C+  + L+  R +  ++   G L  VV  +S++  ++K G + +AR LF+    R+V+T+
Sbjct: 51  CLSQQRLREARHMLDEMPNRGVLDRVVCWTSLLSKFSKNGFIDEARALFEIMPERNVVTY 110

Query: 255 TTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIR 314
             M+SGY + G +  A + F EMPE+N VSWT+L+ G    G   +A ELF  M      
Sbjct: 111 NAMLSGYVQCGRLSDACRFFEEMPERNVVSWTSLLCGLANAGRIGEARELFNVM------ 164

Query: 315 PNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQV 374
           P +                                 N +  +S++    + G L + R+V
Sbjct: 165 PER---------------------------------NVVSWNSMLVGLIRSGQLEEARRV 191

Query: 375 FDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGL 434
           F+    K + + WN MI+   +H   E+A  LF  M   +V    +T   +++    +G 
Sbjct: 192 FNEMPVK-SQVSWNVMIAGYAEHSRMEEARVLFDGMGDRNV----VTWTSMISGYCRAGN 246

Query: 435 VQEGLTYFESM 445
           VQEG   F+ M
Sbjct: 247 VQEGYCLFQKM 257



 Score = 41.6 bits (96), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 35/166 (21%), Positives = 71/166 (42%), Gaps = 11/166 (6%)

Query: 352 TIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMV 411
            +  +SL+  +SK G +++ R +F++   + N + +N M+S   Q G    A R F +M 
Sbjct: 76  VVCWTSLLSKFSKNGFIDEARALFEIMPER-NVVTYNAMLSGYVQCGRLSDACRFFEEMP 134

Query: 412 RSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCS 471
             +V    ++   +L    ++G + E    F  M        N      ++  L ++G  
Sbjct: 135 ERNV----VSWTSLLCGLANAGRIGEARELFNVMPER-----NVVSWNSMLVGLIRSGQL 185

Query: 472 DQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQN 517
           ++      +MP +     WN +      H  ++  R + D + D+N
Sbjct: 186 EEARRVFNEMPVK-SQVSWNVMIAGYAEHSRMEEARVLFDGMGDRN 230


>gi|297823509|ref|XP_002879637.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297325476|gb|EFH55896.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 624

 Score =  309 bits (791), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 179/594 (30%), Positives = 305/594 (51%), Gaps = 19/594 (3%)

Query: 11  NRKNLPNNCLIQSFLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKL 70
           +R  +  N ++ S+  L   G   EAI+    L     +    +   IL  C    +++L
Sbjct: 32  DRDTVAWNTMLTSYSHL---GLHQEAIALFTQLRFSDSKPDDYSFTAILSTCGSLGNVRL 88

Query: 71  GKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPV--KNLFSYNNMLSG 128
           G+++   L +      ++ ++N LI MY KC   + A KVF  +    +N  ++ ++L  
Sbjct: 89  GRKIQ-SLVIRSGFCASSPVNNSLIDMYGKCSDTLSANKVFRDMCCHSRNEVTWCSLLFA 147

Query: 129 YANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSF 188
           Y N    + A ++F  M +R   +WN MI G+A+ G +E  L+ +K +       + F+F
Sbjct: 148 YMNAEQFEAALDVFVEMPKRVPFAWNIMISGHAQCGKIESCLRLFKEMLESEFEPDCFTF 207

Query: 189 AGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDA 248
           + ++  C     +     VH  ++  G+ S V   +S++  YAK G   D  R  +  + 
Sbjct: 208 SSLMNACADSSNVVYGWMVHAVMVRNGWYSAVEAKNSVLSFYAKLGCKDDVMRELESIEV 267

Query: 249 RDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRM 308
              ++W +++    K+G+ + A ++F   PEKN V+WTT+IAGY RNG G++AL  F  M
Sbjct: 268 LTQVSWNSIIDACVKVGETDKALEVFRLAPEKNIVTWTTMIAGYGRNGDGEQALRFFVEM 327

Query: 309 MILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCL 368
           M   +  +   + + L AC+ +  L HGK +HG LI   F+    V ++L+++Y+KCG +
Sbjct: 328 MKSGVDSDHFAYGAVLHACSGLALLGHGKMIHGCLIHCGFQGYAYVGNALVNLYAKCGDI 387

Query: 369 NDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNA 428
            +  + F    NK+  + WNTM+ A   HG  +QA+ L+ +M+ S +KPD +T   +L  
Sbjct: 388 KESNRAFGDIANKD-LVSWNTMLFAFGVHGLADQALELYDNMIASGIKPDNVTFIGLLTT 446

Query: 429 CTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSY 488
           C+HSGLV++G   FESM  D GI    +H  C+I++  + G     + + + +   ++S 
Sbjct: 447 CSHSGLVEKGCAIFESMVKDYGIPLEVDHVTCMIDMFGRGG----HLAEAKDLATTYNSL 502

Query: 489 L--------WNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLV 540
           +        W AL G C  H + ++GR+V   L    P    +  LLS++Y + G+ +  
Sbjct: 503 VINASNNSSWEALLGACSTHWHTELGREVSKVLKIAEPSEELSFVLLSNLYCSSGRWKEA 562

Query: 541 EKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQM 594
           E+VR+ + ER  +K    SWIE+ N+V  F V  S HP  + L   L  L  +M
Sbjct: 563 EEVRREMVERGMRKTPGCSWIEVGNRVSTFVVGGSSHPRLEELSETLNCLQHEM 616



 Score =  184 bits (466), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 117/439 (26%), Positives = 205/439 (46%), Gaps = 38/439 (8%)

Query: 126 LSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNE 185
           ++  A  G +  AR +FD M +RD V+WNTM+  Y+  G  +E +  +  LR      ++
Sbjct: 11  IASLAKSGRITSARQMFDEMTDRDTVAWNTMLTSYSHLGLHQEAIALFTQLRFSDSKPDD 70

Query: 186 FSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDE 245
           +SF  IL+ C  L  ++L R++   V+ +GF ++  +++S++D Y KC +   A ++F +
Sbjct: 71  YSFTAILSTCGSLGNVRLGRKIQSLVIRSGFCASSPVNNSLIDMYGKCSDTLSANKVFRD 130

Query: 246 --TDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALE 303
               +R+ +TW +++  Y      E+A  +F EMP++ P +W  +I+G+ + G  +  L 
Sbjct: 131 MCCHSRNEVTWCSLLFAYMNAEQFEAALDVFVEMPKRVPFAWNIMISGHAQCGKIESCLR 190

Query: 304 LFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYS 363
           LF  M+     P+  TFSS + ACA   ++ +G  VH  ++R  + S     +S++  Y+
Sbjct: 191 LFKEMLESEFEPDCFTFSSLMNACADSSNVVYGWMVHAVMVRNGWYSAVEAKNSVLSFYA 250

Query: 364 KCGCLND-------------------------------GRQVFDLTDNKENSMLWNTMIS 392
           K GC +D                                 +VF L   K N + W TMI+
Sbjct: 251 KLGCKDDVMRELESIEVLTQVSWNSIIDACVKVGETDKALEVFRLAPEK-NIVTWTTMIA 309

Query: 393 ALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGII 452
              ++G  EQA+R F +M++S V  D      +L+AC+   L+  G      + H  G  
Sbjct: 310 GYGRNGDGEQALRFFVEMMKSGVDSDHFAYGAVLHACSGLALLGHGKMIHGCLIH-CGFQ 368

Query: 453 PNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQ 512
                   L+ L A+ G   +       +    D   WN +     +HG  D   ++ D 
Sbjct: 369 GYAYVGNALVNLYAKCGDIKESNRAFGDIA-NKDLVSWNTMLFAFGVHGLADQALELYDN 427

Query: 513 LIDQN--PQSSATHGLLSS 529
           +I     P +    GLL++
Sbjct: 428 MIASGIKPDNVTFIGLLTT 446



 Score =  128 bits (322), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 81/295 (27%), Positives = 141/295 (47%), Gaps = 34/295 (11%)

Query: 255 TTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIR 314
           T+ ++  AK G + SA ++F+EM +++ V+W T++  Y+  GL Q+A+ LFT++     +
Sbjct: 8   TSKIASLAKSGRITSARQMFDEMTDRDTVAWNTMLTSYSHLGLHQEAIALFTQLRFSDSK 67

Query: 315 PNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQV 374
           P+ ++F++ L  C S+ +++ G+++   +IR+ F +++ V +SLIDMY KC       +V
Sbjct: 68  PDDYSFTAILSTCGSLGNVRLGRKIQSLVIRSGFCASSPVNNSLIDMYGKCSDTLSANKV 127

Query: 375 F-DLTDNKENSML-------------------------------WNTMISALTQHGYDEQ 402
           F D+  +  N +                                WN MIS   Q G  E 
Sbjct: 128 FRDMCCHSRNEVTWCSLLFAYMNAEQFEAALDVFVEMPKRVPFAWNIMISGHAQCGKIES 187

Query: 403 AIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLI 462
            +RLF +M+ S  +PD  T + ++NAC  S  V  G      M  + G     E    ++
Sbjct: 188 CLRLFKEMLESEFEPDCFTFSSLMNACADSSNVVYGWMVHAVMVRN-GWYSAVEAKNSVL 246

Query: 463 ELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQN 517
              A+ GC D +M +LE +        WN++   C   G  D   +V     ++N
Sbjct: 247 SFYAKLGCKDDVMRELESIEV-LTQVSWNSIIDACVKVGETDKALEVFRLAPEKN 300


>gi|222623259|gb|EEE57391.1| hypothetical protein OsJ_07563 [Oryza sativa Japonica Group]
          Length = 748

 Score =  309 bits (791), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 190/549 (34%), Positives = 287/549 (52%), Gaps = 39/549 (7%)

Query: 51  PAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTP--TTFLSNHLISMYFKCGSDVDAR 108
           P       L +CA    LK   ++H H  +T R     TTF      S+   C     AR
Sbjct: 227 PTADFVAALHRCATLAHLK---QLHAHAVVTGRAAAQTTTFHLLRFASLRLSCLPY--AR 281

Query: 109 KVFDKIPVKNLFSYNNMLSGYANLGM--MKHARNLFDNMAERDVVSWNTMIIGYAKSGAV 166
           ++FD  P  N+F Y+ MLS YA       +HAR   D++A                    
Sbjct: 282 RLFDATPSPNVFLYSAMLSAYAAASSHSQEHAR---DSLA-------------------- 318

Query: 167 EEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSI 226
                F ++LRR   + N+F +  +L     +  ++L R +H      GF  +  I +S+
Sbjct: 319 ----LFLRMLRRGRPAPNQFVYPLVLRAACAIG-VQLVRSIHCHACKDGFYGHDFIRTSL 373

Query: 227 VDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWT 286
           +D Y++ G + DAR+LFD    R+V++WT +VSGYA+ G +  A  LF  MP+++  +W 
Sbjct: 374 LDGYSRYGMMGDARKLFDGLTDRNVVSWTALVSGYARAGKVGDAIVLFERMPQRDVPAWN 433

Query: 287 TLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRT 346
            +IAG T+NGL  +A+ +F RM+    RPN  T S  L AC  +  LK GK +HG+  R+
Sbjct: 434 AIIAGCTQNGLFVEAVGIFRRMVDEGFRPNGTTVSCLLSACGHLGMLKIGKVIHGYAWRS 493

Query: 347 NFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRL 406
                + V++ LIDMY KCG L + + +FD   ++     WN++I+ L  HG  E AI +
Sbjct: 494 CVGFGSSVVNGLIDMYGKCGNLMEAKWIFDAFSDR-GLTTWNSLINCLALHGCSESAIAV 552

Query: 407 FHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLA 466
           F+ M    V+PD++T   +LNACTH G V EGL YFE M  + GI P  EH+ C+++LL 
Sbjct: 553 FNSMRNEGVQPDEVTFVGLLNACTHGGFVDEGLRYFELMCDEHGIEPEIEHYGCVVDLLC 612

Query: 467 QAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGL 526
           +AG     MN +  M  + D  +W +L   CRIH ++++    +  L+D NP ++    +
Sbjct: 613 RAGRFQDAMNFINDMKVQPDEVIWGSLLNACRIHRHLELAEHAIRNLLDLNPSNANYVVM 672

Query: 527 LSSIYSALGKGRLVEKVRQLINER-QFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYS 585
           L+++YS  G    V KVR+L+ E    KK    SWIE++ K   F   D  HP  + +Y 
Sbjct: 673 LANLYSEGGFWEEVRKVRKLMKEDVTGKKLPGCSWIEVDRKTRRFYSGDDGHPESEDIYD 732

Query: 586 VLEQLAGQM 594
            L++LA  M
Sbjct: 733 TLDKLATTM 741



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 77/270 (28%), Positives = 135/270 (50%), Gaps = 9/270 (3%)

Query: 45  QRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSD 104
           +RG   P + +  ++ + A +  ++L + +H H           F+   L+  Y + G  
Sbjct: 325 RRGRPAPNQFVYPLVLRAACAIGVQLVRSIHCH-ACKDGFYGHDFIRTSLLDGYSRYGMM 383

Query: 105 VDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSG 164
            DARK+FD +  +N+ S+  ++SGYA  G +  A  LF+ M +RDV +WN +I G  ++G
Sbjct: 384 GDARKLFDGLTDRNVVSWTALVSGYARAGKVGDAIVLFERMPQRDVPAWNAIIAGCTQNG 443

Query: 165 AVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVL--VTGFLSNVVI 222
              E +  ++ +       N  + + +L+ C  L  LK+ + +HG       GF S+VV 
Sbjct: 444 LFVEAVGIFRRMVDEGFRPNGTTVSCLLSACGHLGMLKIGKVIHGYAWRSCVGFGSSVV- 502

Query: 223 SSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMP---- 278
            + ++D Y KCG L +A+ +FD    R + TW ++++  A  G  ESA  +FN M     
Sbjct: 503 -NGLIDMYGKCGNLMEAKWIFDAFSDRGLTTWNSLINCLALHGCSESAIAVFNSMRNEGV 561

Query: 279 EKNPVSWTTLIAGYTRNGLGQKALELFTRM 308
           + + V++  L+   T  G   + L  F  M
Sbjct: 562 QPDEVTFVGLLNACTHGGFVDEGLRYFELM 591


>gi|224132926|ref|XP_002321443.1| predicted protein [Populus trichocarpa]
 gi|222868439|gb|EEF05570.1| predicted protein [Populus trichocarpa]
          Length = 723

 Score =  309 bits (791), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 168/552 (30%), Positives = 292/552 (52%), Gaps = 64/552 (11%)

Query: 54  TLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDK 113
           TL+ ++  CAE   L LG++ H  L +         +   L+ MY KC +D         
Sbjct: 147 TLSGVVSACAEMGLLSLGRQFHC-LVMKSGLDLDVCVGCSLVDMYAKCVAD--------- 196

Query: 114 IPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVE-EGLKF 172
                              G +  AR +FD M   +V+SW  +I GY +SG  + E ++ 
Sbjct: 197 -------------------GSVDDARKVFDRMPVHNVMSWTAIITGYVQSGGCDREAIEL 237

Query: 173 YKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAK 232
           +  + +  +  N F+F+ +L  C  L ++ L  QV+  V+     S   + +S++  Y++
Sbjct: 238 FLEMVQGQVKPNHFTFSSVLKACANLSDIWLGEQVYALVVKMRLASINCVGNSLISMYSR 297

Query: 233 CGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGY 292
           CG                               +ME+A K F+ + EKN VS+ T++  Y
Sbjct: 298 CG-------------------------------NMENARKAFDVLFEKNLVSYNTIVNAY 326

Query: 293 TRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNT 352
            ++   ++A ELF  +       N  TF+S L   +SI ++  G+Q+H  ++++ F+SN 
Sbjct: 327 AKSLNSEEAFELFNEIEGAGTGVNAFTFASLLSGASSIGAIGKGEQIHSRILKSGFKSNL 386

Query: 353 IVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVR 412
            + ++LI MYS+CG +    QVF+   +  N + W +MI+   +HG+  +A+  FH M+ 
Sbjct: 387 HICNALISMYSRCGNIEAAFQVFNEMGDG-NVISWTSMITGFAKHGFATRALETFHKMLE 445

Query: 413 SSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSD 472
           + V P+++T   +L+AC+H GL+ EGL +F+SM  + GI+P  EH+AC+++LL ++G  +
Sbjct: 446 AGVSPNEVTYIAVLSACSHVGLISEGLKHFKSMKVEHGIVPRMEHYACVVDLLGRSGHLE 505

Query: 473 QLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYS 532
           + M  +  MP++ D+ +     G CR+HGN+D+G+   + +++Q+P   A + LLS++++
Sbjct: 506 EAMELVNSMPFKADALVLRTFLGACRVHGNMDLGKHAAEMILEQDPHDPAAYILLSNLHA 565

Query: 533 ALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAG 592
           + G+   V ++R+ + ER   KE   SWIE+ENKVH F V D+ HP    +Y  L+QLA 
Sbjct: 566 SAGQWEEVAEIRKKMKERNLTKEAGCSWIEVENKVHKFYVGDTSHPQAQEIYDELDQLAL 625

Query: 593 QMGEDA--PSLD 602
           ++ E    PS D
Sbjct: 626 KIKELGYIPSTD 637



 Score =  164 bits (414), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 108/408 (26%), Positives = 197/408 (48%), Gaps = 66/408 (16%)

Query: 35  EAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHL 94
           EAIS+   + + G          + + C+  +++ LGK +   L  T        +   L
Sbjct: 25  EAISAFFDMLECGFYPNEYCFTGVFRACSNKENISLGKIIFGFLLKTGYFESDVCVGCAL 84

Query: 95  ISMYFKCGSDVD-ARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSW 153
           I M+ K   D++ A KVFD++P +N+ ++  M++ +  LG  + A +LF +M        
Sbjct: 85  IDMFVKGNGDLESAYKVFDRMPDRNVVTWTLMITRFQQLGFSRDAVDLFLDM-------- 136

Query: 154 NTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLV 213
             ++ GY                       + F+ +G+++ C ++  L L RQ H  V+ 
Sbjct: 137 --VLSGYVP---------------------DRFTLSGVVSACAEMGLLSLGRQFHCLVMK 173

Query: 214 TGFLSNVVISSSIVDAYAKC---GELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESA 270
           +G   +V +  S+VD YAKC   G + DAR++FD     +V++WT +++GY + G     
Sbjct: 174 SGLDLDVCVGCSLVDMYAKCVADGSVDDARKVFDRMPVHNVMSWTAIITGYVQSG----- 228

Query: 271 SKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASI 330
                                    G  ++A+ELF  M+  +++PN  TFSS L ACA++
Sbjct: 229 -------------------------GCDREAIELFLEMVQGQVKPNHFTFSSVLKACANL 263

Query: 331 VSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTM 390
             +  G+QV+  +++    S   V +SLI MYS+CG + + R+ FD+   K N + +NT+
Sbjct: 264 SDIWLGEQVYALVVKMRLASINCVGNSLISMYSRCGNMENARKAFDVLFEK-NLVSYNTI 322

Query: 391 ISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEG 438
           ++A  +    E+A  LF+++  +    +  T A +L+  +  G + +G
Sbjct: 323 VNAYAKSLNSEEAFELFNEIEGAGTGVNAFTFASLLSGASSIGAIGKG 370



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 109/409 (26%), Positives = 182/409 (44%), Gaps = 77/409 (18%)

Query: 147 ERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQ 206
           +RD+VSW+ +I  YA +    E +  +  +       NE+ F G+   C   E + L + 
Sbjct: 4   KRDLVSWSALISCYANNEKAFEAISAFFDMLECGFYPNEYCFTGVFRACSNKENISLGKI 63

Query: 207 VHGQVLVTGFL-SNVVISSSIVDAYAKC-GELSDARRLFDETDARDVLTWTTMVSGYAKL 264
           + G +L TG+  S+V +  +++D + K  G+L  A ++FD    R+V+TWT M++ + +L
Sbjct: 64  IFGFLLKTGYFESDVCVGCALIDMFVKGNGDLESAYKVFDRMPDRNVVTWTLMITRFQQL 123

Query: 265 GDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCL 324
           G    A  LF +M          +++GY                      P++ T S  +
Sbjct: 124 GFSRDAVDLFLDM----------VLSGYV---------------------PDRFTLSGVV 152

Query: 325 CACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKC---GCLNDGRQVFDLTDNK 381
            ACA +  L  G+Q H  ++++    +  V  SL+DMY+KC   G ++D R+VFD     
Sbjct: 153 SACAEMGLLSLGRQFHCLVMKSGLDLDVCVGCSLVDMYAKCVADGSVDDARKVFDRMP-V 211

Query: 382 ENSMLWNTMISALTQH-GYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLT 440
            N M W  +I+   Q  G D +AI LF +MV+  VKP+  T + +L AC +         
Sbjct: 212 HNVMSWTAIITGYVQSGGCDREAIELFLEMVQGQVKPNHFTFSSVLKACAN--------- 262

Query: 441 YFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIH 500
                                   L+     +Q+   + KM     + + N+L  +    
Sbjct: 263 ------------------------LSDIWLGEQVYALVVKMRLASINCVGNSLISMYSRC 298

Query: 501 GNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINE 549
           GN++  RK  D L ++N  S  T      I +A  K    E+  +L NE
Sbjct: 299 GNMENARKAFDVLFEKNLVSYNT------IVNAYAKSLNSEEAFELFNE 341



 Score =  125 bits (313), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 94/377 (24%), Positives = 168/377 (44%), Gaps = 76/377 (20%)

Query: 29  SKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTT 88
           S G   EAI     + Q  ++    T + +L+ CA    + LG++V+  L +  R     
Sbjct: 227 SGGCDREAIELFLEMVQGQVKPNHFTFSSVLKACANLSDIWLGEQVYA-LVVKMRLASIN 285

Query: 89  FLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAER 148
            + N LISMY +CG+  +ARK FD +  KNL SYN                         
Sbjct: 286 CVGNSLISMYSRCGNMENARKAFDVLFEKNLVSYN------------------------- 320

Query: 149 DVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVH 208
                 T++  YAKS   EE  + +  +       N F+FA +L+    +  +    Q+H
Sbjct: 321 ------TIVNAYAKSLNSEEAFELFNEIEGAGTGVNAFTFASLLSGASSIGAIGKGEQIH 374

Query: 209 GQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDME 268
            ++L +GF SN+ I ++++  Y++CG +  A ++F+E    +V++WT+M++G+AK     
Sbjct: 375 SRILKSGFKSNLHICNALISMYSRCGNIEAAFQVFNEMGDGNVISWTSMITGFAK----- 429

Query: 269 SASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACA 328
                                     +G   +ALE F +M+   + PN+ T+ + L AC+
Sbjct: 430 --------------------------HGFATRALETFHKMLEAGVSPNEVTYIAVLSACS 463

Query: 329 SI----VSLKHGKQV---HGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNK 381
            +      LKH K +   HG + R          + ++D+  + G L +  ++ +    K
Sbjct: 464 HVGLISEGLKHFKSMKVEHGIVPRMEH------YACVVDLLGRSGHLEEAMELVNSMPFK 517

Query: 382 ENSMLWNTMISALTQHG 398
            ++++  T + A   HG
Sbjct: 518 ADALVLRTFLGACRVHG 534


>gi|15227199|ref|NP_179827.1| protein slow growth 1 [Arabidopsis thaliana]
 gi|75206347|sp|Q9SJZ3.1|PP169_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g22410, mitochondrial; Flags: Precursor
 gi|4544450|gb|AAD22358.1| hypothetical protein [Arabidopsis thaliana]
 gi|18086349|gb|AAL57637.1| At2g22410/F14M13.19 [Arabidopsis thaliana]
 gi|309260071|gb|ADO62711.1| SLOW GROWTH1 [Arabidopsis thaliana]
 gi|330252206|gb|AEC07300.1| protein slow growth 1 [Arabidopsis thaliana]
          Length = 681

 Score =  309 bits (791), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 152/473 (32%), Positives = 266/473 (56%), Gaps = 1/473 (0%)

Query: 122 YNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSI 181
           +N  +  +A+ G M++AR +FD    RD+VSWN +I GY K G  E+ +  YK++    +
Sbjct: 194 HNASIHMFASCGDMENARKVFDESPVRDLVSWNCLINGYKKIGEAEKAIYVYKLMESEGV 253

Query: 182 SCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARR 241
             ++ +  G+++ C  L +L   ++ +  V   G    + + ++++D ++KCG++ +ARR
Sbjct: 254 KPDDVTMIGLVSSCSMLGDLNRGKEFYEYVKENGLRMTIPLVNALMDMFSKCGDIHEARR 313

Query: 242 LFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKA 301
           +FD  + R +++WTTM+SGYA+ G ++ + KLF++M EK+ V W  +I G  +   GQ A
Sbjct: 314 IFDNLEKRTIVSWTTMISGYARCGLLDVSRKLFDDMEEKDVVLWNAMIGGSVQAKRGQDA 373

Query: 302 LELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDM 361
           L LF  M     +P++ T   CL AC+ + +L  G  +H ++ + +   N  + +SL+DM
Sbjct: 374 LALFQEMQTSNTKPDEITMIHCLSACSQLGALDVGIWIHRYIEKYSLSLNVALGTSLVDM 433

Query: 362 YSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKIT 421
           Y+KCG +++   VF     + NS+ +  +I  L  HG    AI  F++M+ + + PD+IT
Sbjct: 434 YAKCGNISEALSVFHGIQTR-NSLTYTAIIGGLALHGDASTAISYFNEMIDAGIAPDEIT 492

Query: 422 LAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKM 481
              +L+AC H G++Q G  YF  M     + P  +H++ +++LL +AG  ++    +E M
Sbjct: 493 FIGLLSACCHGGMIQTGRDYFSQMKSRFNLNPQLKHYSIMVDLLGRAGLLEEADRLMESM 552

Query: 482 PYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVE 541
           P E D+ +W AL   CR+HGN+++G K   +L++ +P  S  + LL  +Y         +
Sbjct: 553 PMEADAAVWGALLFGCRMHGNVELGEKAAKKLLELDPSDSGIYVLLDGMYGEANMWEDAK 612

Query: 542 KVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQM 594
           + R+++NER  +K    S IE+   V  F V D   P  + +Y  L  L   M
Sbjct: 613 RARRMMNERGVEKIPGCSSIEVNGIVCEFIVRDKSRPESEKIYDRLHCLGRHM 665



 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 100/382 (26%), Positives = 178/382 (46%), Gaps = 36/382 (9%)

Query: 18  NCLIQSFLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLH 77
           NCLI  +  +   G+  +AI    L+   G++    T+  ++  C+    L  GK  + +
Sbjct: 226 NCLINGYKKI---GEAEKAIYVYKLMESEGVKPDDVTMIGLVSSCSMLGDLNRGKEFYEY 282

Query: 78  LKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKH 137
           +K    +  T  L N L+ M+ KCG   +AR++FD +  + + S+  M+SGYA  G++  
Sbjct: 283 VKENGLRM-TIPLVNALMDMFSKCGDIHEARRIFDNLEKRTIVSWTTMISGYARCGLLDV 341

Query: 138 ARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVK 197
           +R LFD+M E+DVV WN MI G  ++   ++ L  ++ ++  +   +E +    L+ C +
Sbjct: 342 SRKLFDDMEEKDVVLWNAMIGGSVQAKRGQDALALFQEMQTSNTKPDEITMIHCLSACSQ 401

Query: 198 LEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTM 257
           L  L +   +H  +       NV + +S+VD YAKCG +S+A  +F     R+ LT+T +
Sbjct: 402 LGALDVGIWIHRYIEKYSLSLNVALGTSLVDMYAKCGNISEALSVFHGIQTRNSLTYTAI 461

Query: 258 VSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQ 317
           + G A  GD  +A   FNEM +          AG                     I P++
Sbjct: 462 IGGLALHGDASTAISYFNEMID----------AG---------------------IAPDE 490

Query: 318 HTFSSCLCACASIVSLKHGKQVHGFL-IRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFD 376
            TF   L AC     ++ G+     +  R N        S ++D+  + G L +  ++ +
Sbjct: 491 ITFIGLLSACCHGGMIQTGRDYFSQMKSRFNLNPQLKHYSIMVDLLGRAGLLEEADRLME 550

Query: 377 LTDNKENSMLWNTMISALTQHG 398
               + ++ +W  ++     HG
Sbjct: 551 SMPMEADAAVWGALLFGCRMHG 572



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 105/491 (21%), Positives = 214/491 (43%), Gaps = 84/491 (17%)

Query: 85  TPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNL----FSYNNMLS--GYANLGMMKHA 138
           T +  L N L+S+  KC   +  +++  ++ +  L    F+ + +++    +    + ++
Sbjct: 47  THSFVLHNPLLSLLEKCKLLLHLKQIQAQMIINGLILDPFASSRLIAFCALSESRYLDYS 106

Query: 139 RNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNE-----FSFAGILT 193
             +   +   ++ SWN  I G+++S   +E    YK + R    C E     F++  +  
Sbjct: 107 VKILKGIENPNIFSWNVTIRGFSESENPKESFLLYKQMLRHG--CCESRPDHFTYPVLFK 164

Query: 194 ICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLT 253
           +C  L    L   + G VL         + ++ +  +A CG++ +AR++FDE+  RD+++
Sbjct: 165 VCADLRLSSLGHMILGHVLKLRLELVSHVHNASIHMFASCGDMENARKVFDESPVRDLVS 224

Query: 254 WTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRI 313
           W  +++GY K+G+ E A  ++  M  +                                +
Sbjct: 225 WNCLINGYKKIGEAEKAIYVYKLMESEG-------------------------------V 253

Query: 314 RPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQ 373
           +P+  T    + +C+ +  L  GK+ + ++     R    ++++L+DM+SKCG +++ R+
Sbjct: 254 KPDDVTMIGLVSSCSMLGDLNRGKEFYEYVKENGLRMTIPLVNALMDMFSKCGDIHEARR 313

Query: 374 VFD----------------------------LTDNKE--NSMLWNTMISALTQHGYDEQA 403
           +FD                            L D+ E  + +LWN MI    Q    + A
Sbjct: 314 IFDNLEKRTIVSWTTMISGYARCGLLDVSRKLFDDMEEKDVVLWNAMIGGSVQAKRGQDA 373

Query: 404 IRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGL---TYFESMTHDLGIIPNQEHHAC 460
           + LF +M  S+ KPD+IT+   L+AC+  G +  G+    Y E  +  L +         
Sbjct: 374 LALFQEMQTSNTKPDEITMIHCLSACSQLGALDVGIWIHRYIEKYSLSLNVALGTS---- 429

Query: 461 LIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQN--P 518
           L+++ A+ G   + ++    +    +S  + A+ G   +HG+        +++ID    P
Sbjct: 430 LVDMYAKCGNISEALSVFHGIQ-TRNSLTYTAIIGGLALHGDASTAISYFNEMIDAGIAP 488

Query: 519 QSSATHGLLSS 529
                 GLLS+
Sbjct: 489 DEITFIGLLSA 499


>gi|345505232|gb|AEN99840.1| chlororespiratory reduction 4, partial [Olimarabidopsis pumila]
          Length = 579

 Score =  309 bits (791), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 176/534 (32%), Positives = 288/534 (53%), Gaps = 43/534 (8%)

Query: 42  LLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKC 101
           L+ + G+ +   +L+ +++ C+    +K G ++H  LK T   +   FL N LI +Y KC
Sbjct: 77  LMLEIGVPVDKFSLSLVMKACSRLGFVKGGLQIHGFLKKTGLWS-DLFLQNCLIGLYLKC 135

Query: 102 GSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAE--RDVVSWNTMIIG 159
           G    AR++FD++P ++  SYN+M+ GY   G ++ A  LFD M    ++++SWN++I G
Sbjct: 136 GCLGFARQIFDRMPQRDSVSYNSMIDGYVKCGSIESASELFDLMPREMKNLISWNSLISG 195

Query: 160 YAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSN 219
           YA++    EG+          I+   F+         ++ E                  +
Sbjct: 196 YAQT---SEGV---------DIASKLFA---------EMPE-----------------KD 217

Query: 220 VVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPE 279
           ++  +S++D Y K G + DA+ LFD    RDV+TW TM+ GYAKLG +  A  LF++MP 
Sbjct: 218 LISWNSMIDGYVKHGRIEDAKDLFDMVPRRDVVTWATMIDGYAKLGFVHQAKTLFDQMPH 277

Query: 280 KNPVSWTTLIAGYTRNGLGQKALELFTRM-MILRIRPNQHTFSSCLCACASIVSLKHGKQ 338
           ++ V++ +++AGY +N    +ALE+F+ M     + P++ T    L A A +  L     
Sbjct: 278 RDVVAYNSMMAGYVQNRFHMEALEIFSDMEKESHLSPDETTLVIVLSAIAQLGRLSKAMD 337

Query: 339 VHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHG 398
           +H +++   F     +  +LIDMYSKCG +     VF+  +NK     WN MI  L  HG
Sbjct: 338 MHLYIVEKQFLLGGKLGVALIDMYSKCGSIQHAMLVFEGIENKSIDH-WNAMIGGLAIHG 396

Query: 399 YDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHH 458
             E A  +   + R S+KPD IT   +LNAC+HSGLV+EGL  FE M     I P  +H+
Sbjct: 397 LGESAFDMLLQIERRSIKPDDITFVGVLNACSHSGLVKEGLLCFELMRRKHKIEPRLQHY 456

Query: 459 ACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNP 518
            C++++L+++G  +   N +E+MP E +  +W      C  H   + G  V   LI Q  
Sbjct: 457 GCMVDILSRSGSIELAKNLIEEMPIEPNDVIWRTFLTACSHHKEFETGELVAKHLILQAD 516

Query: 519 QSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSV 572
            + +++ LLS++Y++ G  + V +VR ++ ER+ +K    SWIE++  VH F V
Sbjct: 517 YNPSSYVLLSNMYASFGMWKDVRRVRTMMKERKIEKIPGCSWIELDGXVHEFFV 570



 Score =  142 bits (358), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 103/378 (27%), Positives = 190/378 (50%), Gaps = 34/378 (8%)

Query: 149 DVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVH 208
           D   WN MI  ++        L  + ++    +  ++FS + ++  C +L  +K   Q+H
Sbjct: 51  DPYLWNAMIKSHSHGTDPRRALLLFCLMLEIGVPVDKFSLSLVMKACSRLGFVKGGLQIH 110

Query: 209 GQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDME 268
           G +  TG  S++ + + ++  Y KCG L  AR++FD    RD +++ +M+ GY K G +E
Sbjct: 111 GFLKKTGLWSDLFLQNCLIGLYLKCGCLGFARQIFDRMPQRDSVSYNSMIDGYVKCGSIE 170

Query: 269 SASKLFNEMPE--KNPVSWTTLIAGYTRNGLGQK-ALELFTRMMILRIRPNQHTFSSCLC 325
           SAS+LF+ MP   KN +SW +LI+GY +   G   A +LF  M      P +      L 
Sbjct: 171 SASELFDLMPREMKNLISWNSLISGYAQTSEGVDIASKLFAEM------PEKD-----LI 219

Query: 326 ACASIVS--LKHGK-QVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKE 382
           +  S++   +KHG+ +    L     R + +  +++ID Y+K G ++  + +FD   ++ 
Sbjct: 220 SWNSMIDGYVKHGRIEDAKDLFDMVPRRDVVTWATMIDGYAKLGFVHQAKTLFDQMPHR- 278

Query: 383 NSMLWNTMISALTQHGYDEQAIRLFHDMVRSS-VKPDKITLAVILNACTHSGLVQEGLTY 441
           + + +N+M++   Q+ +  +A+ +F DM + S + PD+ TL ++L+A    G +      
Sbjct: 279 DVVAYNSMMAGYVQNRFHMEALEIFSDMEKESHLSPDETTLVIVLSAIAQLGRLS----- 333

Query: 442 FESMTHDLGIIPNQ-----EHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGV 496
            ++M   L I+  Q     +    LI++ ++ G     M   E +  +   + WNA+ G 
Sbjct: 334 -KAMDMHLYIVEKQFLLGGKLGVALIDMYSKCGSIQHAMLVFEGIENKSIDH-WNAMIGG 391

Query: 497 CRIHGNIDMGRKVVDQLI 514
             IHG   +G    D L+
Sbjct: 392 LAIHG---LGESAFDMLL 406



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 59/208 (28%), Positives = 101/208 (48%), Gaps = 31/208 (14%)

Query: 208 HGQVLVTGFLSNVVISSSIVDAYAKCGE--LSD-ARRLFDETDARDVLTWTTMVSGYAKL 264
           H +++ TG + N  +++ IV A+A      L++ AR +F E               Y   
Sbjct: 2   HARLIKTGIIKNSNLTTRIVLAFAASPRPYLAEFARFVFHE---------------YHYG 46

Query: 265 GDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCL 324
           G++E            +P  W  +I  ++     ++AL LF  M+ + +  ++ + S  +
Sbjct: 47  GEVE------------DPYLWNAMIKSHSHGTDPRRALLLFCLMLEIGVPVDKFSLSLVM 94

Query: 325 CACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENS 384
            AC+ +  +K G Q+HGFL +T   S+  + + LI +Y KCGCL   RQ+FD    + +S
Sbjct: 95  KACSRLGFVKGGLQIHGFLKKTGLWSDLFLQNCLIGLYLKCGCLGFARQIFDRMPQR-DS 153

Query: 385 MLWNTMISALTQHGYDEQAIRLFHDMVR 412
           + +N+MI    + G  E A  LF  M R
Sbjct: 154 VSYNSMIDGYVKCGSIESASELFDLMPR 181



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 56/209 (26%), Positives = 98/209 (46%), Gaps = 15/209 (7%)

Query: 382 ENSMLWNTMISALTQHGYD-EQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLT 440
           E+  LWN MI + + HG D  +A+ LF  M+   V  DK +L++++ AC+  G V+ GL 
Sbjct: 50  EDPYLWNAMIKSHS-HGTDPRRALLLFCLMLEIGVPVDKFSLSLVMKACSRLGFVKGGLQ 108

Query: 441 YFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIH 500
                    G+  +     CLI L  + GC        ++MP + DS  +N++       
Sbjct: 109 -IHGFLKKTGLWSDLFLQNCLIGLYLKCGCLGFARQIFDRMP-QRDSVSYNSMIDGYVKC 166

Query: 501 GNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISW 560
           G+I+   ++ D L+ +  ++  +   L S Y+   +G  V+   +L  E    ++  ISW
Sbjct: 167 GSIESASELFD-LMPREMKNLISWNSLISGYAQTSEG--VDIASKLFAE--MPEKDLISW 221

Query: 561 IE-IENKVHAFSVSDS-----LHPMRDVL 583
              I+  V    + D+     + P RDV+
Sbjct: 222 NSMIDGYVKHGRIEDAKDLFDMVPRRDVV 250


>gi|356557876|ref|XP_003547236.1| PREDICTED: pentatricopeptide repeat-containing protein At5g19020,
           mitochondrial-like [Glycine max]
          Length = 912

 Score =  309 bits (791), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 160/476 (33%), Positives = 267/476 (56%), Gaps = 3/476 (0%)

Query: 88  TFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAE 147
             +S +L+  Y  C    +AR++FD++P  NL S+N ML+GYA  G++  AR LF+ + +
Sbjct: 436 VLVSTNLMRAYCLCSGVGEARRLFDRMPEVNLVSWNVMLNGYAKAGLVDMARELFERVPD 495

Query: 148 RDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQV 207
           +DV+SW TMI GY     + E L  Y+ + R  ++ NE     +++ C +L  +    Q+
Sbjct: 496 KDVISWGTMIDGYILMNRLHEALVMYRAMLRSGLALNEILVVNLVSACGRLNAIGDGWQL 555

Query: 208 HGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVL-TWTTMVSGYAKLGD 266
           HG V+  GF     I ++I+  YA CG +  A   F E  A+D L +W  +VSG+ K   
Sbjct: 556 HGMVVKKGFDCYNFIQTTIIHFYAACGMMDLACLQF-EVGAKDHLESWNALVSGFIKNRM 614

Query: 267 MESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCA 326
           ++ A K+F++MPE++  SW+T+I+GY +    + ALELF +M+   I+PN+ T  S   A
Sbjct: 615 VDQARKIFDDMPERDVFSWSTMISGYAQTDQSRIALELFHKMVASGIKPNEVTMVSVFSA 674

Query: 327 CASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSM- 385
            A++ +LK G+  H ++   +   N  + ++LIDMY+KCG +N   Q F+   +K  S+ 
Sbjct: 675 IATLGTLKEGRWAHEYICNESIPLNDNLRAALIDMYAKCGSINSALQFFNQIRDKTFSVS 734

Query: 386 LWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESM 445
            WN +I  L  HG+    + +F DM R ++KP+ IT   +L+AC H+GLV+ G   F  M
Sbjct: 735 PWNAIICGLASHGHASMCLDVFSDMQRYNIKPNPITFIGVLSACCHAGLVEPGRRIFRIM 794

Query: 446 THDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDM 505
                + P+ +H+ C+++LL +AG  ++    +  MP + D  +W  L   CR HG++++
Sbjct: 795 KSAYNVEPDIKHYGCMVDLLGRAGLLEEAEEMIRSMPMKADIVIWGTLLAACRTHGDVNI 854

Query: 506 GRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWI 561
           G +  + L    P       LLS+IY+  G+   V  VR+ I  ++ ++    S +
Sbjct: 855 GERAAESLAGLAPSHGGGKVLLSNIYADAGRWEDVSLVRRAIQNQRMERMPGCSGV 910



 Score =  216 bits (549), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 156/537 (29%), Positives = 261/537 (48%), Gaps = 62/537 (11%)

Query: 54  TLAFILQQCAESKSLKLGKRVH-LHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFD 112
            L   L+ C+ S     G+++H L LKL       TF+ N LI+MY K GS  DA+ +FD
Sbjct: 274 ALVSALKYCSSSSQ---GRQLHSLVLKLGLHSN--TFIQNSLINMYAKRGSIKDAQLLFD 328

Query: 113 KIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKF 172
             P  N  S N M+ GYA  G + +AR LFD M ++  VS+ TMI+G  ++    E L+ 
Sbjct: 329 ACPTLNPISCNIMVCGYAKAGQLDNARKLFDIMPDKGCVSYTTMIMGLVQNECFREALEV 388

Query: 173 YKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHG---QVLVTGFLSNVVISSSIVDA 229
           +K +R   +  N+ +   ++  C    E+   R +H    ++ V G    V++S++++ A
Sbjct: 389 FKDMRSDGVVPNDLTLVNVIYACSHFGEILNCRMIHAIAIKLFVEGL---VLVSTNLMRA 445

Query: 230 YAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLI 289
           Y  C  + +ARRLFD     ++++W  M++GYAK G ++ A +LF  +P+K+ +SW T+I
Sbjct: 446 YCLCSGVGEARRLFDRMPEVNLVSWNVMLNGYAKAGLVDMARELFERVPDKDVISWGTMI 505

Query: 290 AGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFR 349
            GY       +AL ++  M+   +  N+    + + AC  + ++  G Q+HG +++  F 
Sbjct: 506 DGYILMNRLHEALVMYRAMLRSGLALNEILVVNLVSACGRLNAIGDGWQLHGMVVKKGFD 565

Query: 350 SNTIVMSSLIDMYSKCG-----CL--------------------------NDGRQVFDLT 378
               + +++I  Y+ CG     CL                          +  R++FD  
Sbjct: 566 CYNFIQTTIIHFYAACGMMDLACLQFEVGAKDHLESWNALVSGFIKNRMVDQARKIFD-- 623

Query: 379 DNKENSML-WNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQE 437
           D  E  +  W+TMIS   Q      A+ LFH MV S +KP+++T+  + +A    G ++E
Sbjct: 624 DMPERDVFSWSTMISGYAQTDQSRIALELFHKMVASGIKPNEVTMVSVFSAIATLGTLKE 683

Query: 438 GLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSD---QLMNQLEKMPYEHDSYLWNALH 494
           G    E + ++  I  N    A LI++ A+ G  +   Q  NQ+    +      WNA+ 
Sbjct: 684 GRWAHEYICNE-SIPLNDNLRAALIDMYAKCGSINSALQFFNQIRDKTFSVSP--WNAI- 739

Query: 495 GVCRI--HGNIDMGRKVVDQLIDQN--PQSSATHGLLSSIYSALGKGRLVEKVRQLI 547
            +C +  HG+  M   V   +   N  P      G+LS+   A     LVE  R++ 
Sbjct: 740 -ICGLASHGHASMCLDVFSDMQRYNIKPNPITFIGVLSACCHA----GLVEPGRRIF 791


>gi|356519999|ref|XP_003528655.1| PREDICTED: pentatricopeptide repeat-containing protein At2g36980,
           mitochondrial-like [Glycine max]
          Length = 629

 Score =  308 bits (790), Expect = 4e-81,   Method: Compositional matrix adjust.
 Identities = 180/543 (33%), Positives = 295/543 (54%), Gaps = 10/543 (1%)

Query: 62  CAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFS 121
           CA +  ++ G  +H  L +      +  ++N LI MY KC    DARKVFD+    N  +
Sbjct: 83  CAGASYVRFGATLHA-LVVVSGYLSSLPVANSLIDMYGKCLLPDDARKVFDETSDSNEVT 141

Query: 122 YNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSI 181
           + +++  YAN   +  A  LF +M ER V++WN MI+G+A+ G VE  L  +K +     
Sbjct: 142 WCSLMFAYANSCRLGVALELFRSMPERVVIAWNIMIVGHARRGEVEACLHLFKEMCGSLC 201

Query: 182 SCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARR 241
             ++++F+ ++  C    E+     VHG V+ +G+ S + + +S++  YAK     DA +
Sbjct: 202 QPDQWTFSALINACAVSMEMLYGCMVHGFVIKSGWSSAMEVKNSMLSFYAKLECQDDAMK 261

Query: 242 LFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKA 301
           +F+     + ++W  ++  + KLGD + A   F + PE+N VSWT++IAGYTRNG G+ A
Sbjct: 262 VFNSFGCFNQVSWNAIIDAHMKLGDTQKAFLAFQKAPERNIVSWTSMIAGYTRNGNGELA 321

Query: 302 LELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDM 361
           L +F  +    ++ +     + L ACAS+  L HG+ VHG +IR        V +SL++M
Sbjct: 322 LSMFLDLTRNSVQLDDLVAGAVLHACASLAILVHGRMVHGCIIRHGLDKYLYVGNSLVNM 381

Query: 362 YSKCGCLNDGRQVF-DLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKI 420
           Y+KCG +   R  F D+ D  ++ + WN+M+ A   HG   +AI L+ +MV S VKPD++
Sbjct: 382 YAKCGDIKGSRLAFHDILD--KDLISWNSMLFAFGLHGRANEAICLYREMVASGVKPDEV 439

Query: 421 TLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEK 480
           T   +L  C+H GL+ EG  +F+SM  + G+    +H AC++++L + G   +  +  EK
Sbjct: 440 TFTGLLMTCSHLGLISEGFAFFQSMCLEFGLSHGMDHVACMVDMLGRGGYVAEARSLAEK 499

Query: 481 MPYEHDSYL----WNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGK 536
             Y   S         L G C  HG++  G  V + L +  P+    + LLS++Y A GK
Sbjct: 500 --YSKTSITRTNSCEVLLGACYAHGDLGTGSSVGEYLKNLEPEKEVGYVLLSNLYCASGK 557

Query: 537 GRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQMGE 596
            R  E VR+ + ++  KK    SWIEI N+V +F   ++ +P    +  +L  L  +M  
Sbjct: 558 WREAEMVRKAMLDQGVKKVPGSSWIEIRNEVTSFVSGNNAYPYMADISKILYFLELEMRH 617

Query: 597 DAP 599
            +P
Sbjct: 618 TSP 620



 Score =  185 bits (470), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 103/352 (29%), Positives = 180/352 (51%), Gaps = 32/352 (9%)

Query: 119 LFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRR 178
           LF     +   A  G +  AR LFD +  +D V+WN M+  Y+  G  ++ L  +  +R 
Sbjct: 5   LFRTTPKIVALARSGQISDARKLFDEIPHKDSVAWNAMLTAYSHVGLYQQSLSLFGCMRI 64

Query: 179 FSISCNEFSFAGILT--ICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGEL 236
                + FSF+ +L    C     ++    +H  V+V+G+LS++ +++S++D Y KC   
Sbjct: 65  SHSKPDNFSFSAVLNACACAGASYVRFGATLHALVVVSGYLSSLPVANSLIDMYGKCLLP 124

Query: 237 SDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNG 296
            DAR++FDET   + +TW +++  YA    +  A +LF  MPE+  ++W  +I G+ R G
Sbjct: 125 DDARKVFDETSDSNEVTWCSLMFAYANSCRLGVALELFRSMPERVVIAWNIMIVGHARRG 184

Query: 297 LGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMS 356
             +  L LF  M     +P+Q TFS+ + ACA  + + +G  VHGF+I++ + S   V +
Sbjct: 185 EVEACLHLFKEMCGSLCQPDQWTFSALINACAVSMEMLYGCMVHGFVIKSGWSSAMEVKN 244

Query: 357 SLIDMYSKCGCLNDGRQVFD-------------------LTDNKE-----------NSML 386
           S++  Y+K  C +D  +VF+                   L D ++           N + 
Sbjct: 245 SMLSFYAKLECQDDAMKVFNSFGCFNQVSWNAIIDAHMKLGDTQKAFLAFQKAPERNIVS 304

Query: 387 WNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEG 438
           W +MI+  T++G  E A+ +F D+ R+SV+ D +    +L+AC    ++  G
Sbjct: 305 WTSMIAGYTRNGNGELALSMFLDLTRNSVQLDDLVAGAVLHACASLAILVHG 356


>gi|224119336|ref|XP_002331286.1| predicted protein [Populus trichocarpa]
 gi|222873711|gb|EEF10842.1| predicted protein [Populus trichocarpa]
          Length = 897

 Score =  308 bits (790), Expect = 5e-81,   Method: Compositional matrix adjust.
 Identities = 169/580 (29%), Positives = 297/580 (51%), Gaps = 68/580 (11%)

Query: 19  CLIQSFLSLISKGQLS----EAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRV 74
           C +QS+ ++I     S    +A+ S  LL + G+     TL+  L  CA  +    G++V
Sbjct: 346 CSLQSYNAIIVGYARSDRGFQALKSFQLLLKTGLGFDEITLSGALNACASIRGDLEGRQV 405

Query: 75  HLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGM 134
           H  L +         ++N ++ MY KC +                               
Sbjct: 406 H-GLAVKSISMSNICVANAILDMYGKCKA------------------------------- 433

Query: 135 MKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTI 194
           +  A +LFD M  RD VSWN +I    ++G  EE L  +  +    +  ++F++  +L  
Sbjct: 434 LAEASDLFDMMERRDAVSWNAIIAACEQNGNEEETLAHFASMIHSRMEPDDFTYGSVLKA 493

Query: 195 CVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTW 254
           C   + L    ++H +++ +G   +  + +++VD Y KCG +                  
Sbjct: 494 CAGRQALNTGMEIHTRIIKSGMGFDSFVGAALVDMYCKCGMI------------------ 535

Query: 255 TTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIR 314
                        E A K+ +   +K  VSW  +I+G++     + A + F+RM+ + + 
Sbjct: 536 -------------EKADKIHDRTEQKTMVSWNAIISGFSLLQQSEDAHKFFSRMLEMGVN 582

Query: 315 PNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQV 374
           P+  T+++ L  CA++ ++  GKQ+H  +I+   +S+  + S+L+DMYSKCG + D + +
Sbjct: 583 PDNFTYAAVLDTCANLATVGLGKQIHAQIIKQELQSDVYICSTLVDMYSKCGNMQDSQLM 642

Query: 375 FDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGL 434
           F+   N++  + WN M+     HG  E+A++LF  M   +VKP+  T   +L AC H GL
Sbjct: 643 FEKAPNRD-FVTWNAMLCGYAHHGLGEEALKLFESMQLVNVKPNHATFVSVLRACAHMGL 701

Query: 435 VQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALH 494
           V +GL YF+ M  + G+ P  EH++C++++L ++G  D+ +N ++KMP+E D+ +W  L 
Sbjct: 702 VDKGLHYFDVMLSEYGLDPQSEHYSCMVDILGRSGRIDEALNLVQKMPFEADAVIWRNLL 761

Query: 495 GVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKK 554
            VC+IHGN+++  K    L+  +PQ S+   LLS+IY+  G    V ++R+++   + KK
Sbjct: 762 SVCKIHGNVEVAEKATRALLQLDPQDSSACVLLSNIYADAGMWGNVSEMRKMMRHNKLKK 821

Query: 555 EQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQM 594
           E   SWIE++++VHAF V D  HP  + +Y  L  L G+M
Sbjct: 822 EPGCSWIELKDEVHAFLVGDKGHPRDEEIYEKLGVLIGEM 861



 Score =  213 bits (543), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 144/470 (30%), Positives = 238/470 (50%), Gaps = 53/470 (11%)

Query: 43  LAQRGIRLPAE--TLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFK 100
           LAQ   + PA+  T + I Q+C++  SL  GK+ H  +     + PTTF+SN L+ MY K
Sbjct: 38  LAQNQTQPPAKIRTFSHIYQECSKQNSLNPGKQAHARMIFCGFE-PTTFVSNCLMQMYIK 96

Query: 101 CGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGY 160
           C     A KVFDK+ ++++ SYN+++SGYA+ G M  AR  F  M ERDVVSWN++I G+
Sbjct: 97  CLYLDYACKVFDKMYLRDVVSYNSIISGYASCGEMDIARKFFYEMPERDVVSWNSVISGF 156

Query: 161 AKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNV 220
            ++G   + +  +  + R  +  +  S A +L  C  LEE  +  QVHG V+  GF  +V
Sbjct: 157 LQNGECRKSIDVFLEMGRCGVGFDRASLAVVLKACGALEECDMGVQVHGLVVKFGFDCDV 216

Query: 221 VISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEK 280
           V  S+++  YAKC  L D+  +F E   ++ ++W+ M                       
Sbjct: 217 VTGSALLGMYAKCKRLDDSLSVFSELPEKNWVSWSAM----------------------- 253

Query: 281 NPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVH 340
                   IAG  +N    + LELF  M  + +  +Q  ++S   +CA++ +L+ GK++H
Sbjct: 254 --------IAGCVQNDRNVEGLELFKEMQGVGVGVSQSIYASLFRSCAALSALRLGKELH 305

Query: 341 GFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYD 400
              +++ F S+ IV ++ +DMY+KCG + D ++V   +  K +   +N +I    +    
Sbjct: 306 SHALKSAFGSDIIVGTATLDMYAKCGRMADAQKVLS-SMPKCSLQSYNAIIVGYARSDRG 364

Query: 401 EQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHAC 460
            QA++ F  ++++ +  D+ITL+  LNAC       EG        H L +      + C
Sbjct: 365 FQALKSFQLLLKTGLGFDEITLSGALNACASIRGDLEG-----RQVHGLAVKSISMSNIC 419

Query: 461 LIELL--------AQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGN 502
           +   +        A A  SD L + +E+     D+  WNA+   C  +GN
Sbjct: 420 VANAILDMYGKCKALAEASD-LFDMMER----RDAVSWNAIIAACEQNGN 464



 Score =  166 bits (421), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 129/553 (23%), Positives = 245/553 (44%), Gaps = 103/553 (18%)

Query: 18  NCLIQSFLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVH-L 76
           N +I  FL     G+  ++I     + + G+     +LA +L+ C   +   +G +VH L
Sbjct: 150 NSVISGFLQ---NGECRKSIDVFLEMGRCGVGFDRASLAVVLKACGALEECDMGVQVHGL 206

Query: 77  HLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMK 136
            +K        T   + L+ MY KC    D+  VF ++P                     
Sbjct: 207 VVKFGFDCDVVT--GSALLGMYAKCKRLDDSLSVFSELP--------------------- 243

Query: 137 HARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICV 196
                     E++ VSW+ MI G  ++    EGL+ +K ++   +  ++  +A +   C 
Sbjct: 244 ----------EKNWVSWSAMIAGCVQNDRNVEGLELFKEMQGVGVGVSQSIYASLFRSCA 293

Query: 197 KLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTT 256
            L  L+L +++H   L + F S++++ ++ +D YAKCG ++DA+                
Sbjct: 294 ALSALRLGKELHSHALKSAFGSDIIVGTATLDMYAKCGRMADAQ---------------- 337

Query: 257 MVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPN 316
                          K+ + MP+ +  S+  +I GY R+  G +AL+ F  ++   +  +
Sbjct: 338 ---------------KVLSSMPKCSLQSYNAIIVGYARSDRGFQALKSFQLLLKTGLGFD 382

Query: 317 QHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFD 376
           + T S  L ACASI     G+QVHG  +++   SN  V ++++DMY KC  L +   +FD
Sbjct: 383 EITLSGALNACASIRGDLEGRQVHGLAVKSISMSNICVANAILDMYGKCKALAEASDLFD 442

Query: 377 LTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACT------ 430
           + + + +++ WN +I+A  Q+G +E+ +  F  M+ S ++PD  T   +L AC       
Sbjct: 443 MME-RRDAVSWNAIIAACEQNGNEEETLAHFASMIHSRMEPDDFTYGSVLKACAGRQALN 501

Query: 431 -----HSGLVQEGLTY-------FESMTHDLGIIPNQEH-------------HACL--IE 463
                H+ +++ G+ +          M    G+I   +              +A +    
Sbjct: 502 TGMEIHTRIIKSGMGFDSFVGAALVDMYCKCGMIEKADKIHDRTEQKTMVSWNAIISGFS 561

Query: 464 LLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSA- 522
           LL Q+  + +  +++ +M    D++ + A+   C     + +G+++  Q+I Q  QS   
Sbjct: 562 LLQQSEDAHKFFSRMLEMGVNPDNFTYAAVLDTCANLATVGLGKQIHAQIIKQELQSDVY 621

Query: 523 THGLLSSIYSALG 535
               L  +YS  G
Sbjct: 622 ICSTLVDMYSKCG 634


>gi|414884091|tpg|DAA60105.1| TPA: hypothetical protein ZEAMMB73_697281 [Zea mays]
          Length = 734

 Score =  308 bits (789), Expect = 5e-81,   Method: Compositional matrix adjust.
 Identities = 179/597 (29%), Positives = 308/597 (51%), Gaps = 48/597 (8%)

Query: 9   GINRKNLPNNCLIQSFLSLIS----KGQLSEAISSL-DLLAQRGIRLP-AETLAFILQQC 62
           G   ++LP      ++ S+IS    +G+ ++ + +  ++L + G   P A  LA +L+ C
Sbjct: 83  GTPTRSLP------AWTSIISGCAREGRHADGMRAFAEMLDECGATAPNAFVLAGVLRCC 136

Query: 63  AESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSY 122
           A    ++ G+R+H  + L     P   L N ++ MY KCG    AR+ F  +  K+  S+
Sbjct: 137 AGLGDVESGRRIHGWI-LRSGVCPDVVLCNAVLDMYAKCGDHGRARRAFGAMAQKDATSW 195

Query: 123 NNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSIS 182
           N ++      G +  A  LFD  + RDV SWNT++ G  + G   E L   + + R  ++
Sbjct: 196 NIVIRACLQDGDLVGATQLFDESSLRDVSSWNTIVSGLMRHGHTTEALGRLQQMVRAGVT 255

Query: 183 CNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRL 242
            + ++++ +  +   L    L RQ+HG+V+V     +  +  S++D Y KCGE       
Sbjct: 256 FSNYTYSMVFALAGLLSSRDLGRQLHGRVVVAVLEEDAFVGCSLMDMYCKCGE------- 308

Query: 243 FDETDARDVLTWTTMVSGYAKLGDMESASKLFN---EMPEKNPVSWTTLIAGYTRNGLGQ 299
                                   MESA  +F+   +  E    +W+T++AGY +NG  +
Sbjct: 309 ------------------------MESALSIFDRWSDFTEDRQFAWSTMVAGYVQNGREE 344

Query: 300 KALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLI 359
           +ALE F RM+   +   Q   +S   ACA+   ++ G+QVHGF+ +   R +  + S+++
Sbjct: 345 EALEFFRRMLREGVPAGQFILTSVASACANAGMVEQGRQVHGFVEKLGHRFDAPLASAIV 404

Query: 360 DMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDK 419
           DMYSK G L D  ++F     K N  LW TM+ +   HG    A+ +F  M    + P++
Sbjct: 405 DMYSKSGSLEDACRIFRSAQTK-NVALWTTMLCSYASHGQGRMALEIFSRMKAEKIMPNE 463

Query: 420 ITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLE 479
           ITL  +L+AC+HSGLV +G  YF  M  + GI+PN EH+ C+++L  +AG  D+  N +E
Sbjct: 464 ITLVAVLSACSHSGLVSDGYHYFNLMQEEYGIVPNTEHYNCMVDLYGRAGLLDKAKNFIE 523

Query: 480 KMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRL 539
           +    H++ +W  L   CR+H +I+  +   ++L+      + ++ L+S++Y+   K   
Sbjct: 524 ENKISHEAVVWKTLLSACRLHKHIEYAQLASEKLVQLEQYDAGSYVLMSNMYATNNKWLD 583

Query: 540 VEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQMGE 596
             K+R  + ER+ +K+   SWI ++N VH F   D+ HP    +Y+ LE+L  ++ E
Sbjct: 584 TFKLRSSMKERRVRKQPGQSWIHLKNVVHRFVALDTSHPRSAEIYAYLEKLMERLKE 640



 Score =  175 bits (443), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 97/358 (27%), Positives = 189/358 (52%), Gaps = 10/358 (2%)

Query: 85  TPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDN 144
           +P TF+ +    +  + G+   A+K   +  V+     +++++       + +A  +FD 
Sbjct: 30  SPQTFIFHSSARLLPEAGA-CAAKKAIHRQSVRGCVPSSSVIAR-----GLHNAHRVFDG 83

Query: 145 MAERDVVSWNTMIIGYAKSGAVEEGLK-FYKVLRRFSISC-NEFSFAGILTICVKLEELK 202
              R + +W ++I G A+ G   +G++ F ++L     +  N F  AG+L  C  L +++
Sbjct: 84  TPTRSLPAWTSIISGCAREGRHADGMRAFAEMLDECGATAPNAFVLAGVLRCCAGLGDVE 143

Query: 203 LTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYA 262
             R++HG +L +G   +VV+ ++++D YAKCG+   ARR F     +D  +W  ++    
Sbjct: 144 SGRRIHGWILRSGVCPDVVLCNAVLDMYAKCGDHGRARRAFGAMAQKDATSWNIVIRACL 203

Query: 263 KLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSS 322
           + GD+  A++LF+E   ++  SW T+++G  R+G   +AL    +M+   +  + +T+S 
Sbjct: 204 QDGDLVGATQLFDESSLRDVSSWNTIVSGLMRHGHTTEALGRLQQMVRAGVTFSNYTYSM 263

Query: 323 CLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFD-LTDNK 381
                  + S   G+Q+HG ++      +  V  SL+DMY KCG +     +FD  +D  
Sbjct: 264 VFALAGLLSSRDLGRQLHGRVVVAVLEEDAFVGCSLMDMYCKCGEMESALSIFDRWSDFT 323

Query: 382 ENSML-WNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEG 438
           E+    W+TM++   Q+G +E+A+  F  M+R  V   +  L  + +AC ++G+V++G
Sbjct: 324 EDRQFAWSTMVAGYVQNGREEEALEFFRRMLREGVPAGQFILTSVASACANAGMVEQG 381


>gi|356495396|ref|XP_003516564.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Glycine max]
          Length = 516

 Score =  308 bits (789), Expect = 5e-81,   Method: Compositional matrix adjust.
 Identities = 154/485 (31%), Positives = 265/485 (54%), Gaps = 3/485 (0%)

Query: 109 KVFDKIPVKNLFSYNNMLSGYANLGM--MKHARNLFDNMAERDVVSWNTMIIGYAKSGAV 166
           ++  K  ++N  + + +L  YA + +  + + R +FD+++  + V WNTM+  Y+ S   
Sbjct: 32  QLLKKGTIRNQLTVSTLLVSYARIELVNLAYTRVVFDSISSPNTVIWNTMLRAYSNSNDP 91

Query: 167 EEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSI 226
           E  L  Y  +   S+  N ++F  +L  C  L   + T+Q+H  ++  GF   V  ++S+
Sbjct: 92  EAALLLYHQMLHNSVPHNSYTFPFLLKACSALSAFEETQQIHAHIIKRGFGLEVYATNSL 151

Query: 227 VDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWT 286
           +  YA  G +  A  LF++   RD+++W  M+ GY K G+++ A K+F  MPEKN +SWT
Sbjct: 152 LRVYAISGNIQSAHVLFNQLPTRDIVSWNIMIDGYIKFGNLDMAYKIFQAMPEKNVISWT 211

Query: 287 TLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRT 346
           T+I G+ R G+ ++AL L  +M++  I+P+  T S  L ACA + +L+ GK +H ++ + 
Sbjct: 212 TMIVGFVRIGMHKEALSLLQQMLVAGIKPDSITLSCSLSACAGLGALEQGKWIHTYIEKN 271

Query: 347 NFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRL 406
             + + ++   L DMY KCG +     VF   + K+    W  +I  L  HG   +A+  
Sbjct: 272 EIKIDPVLGCVLTDMYVKCGEMEKALLVFSKLE-KKCVCAWTAIIGGLAIHGKGREALDW 330

Query: 407 FHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLA 466
           F  M ++ + P+ IT   IL AC+H+GL +EG + FESM+    I P+ EH+ C+++L+ 
Sbjct: 331 FTQMQKAGINPNSITFTAILTACSHAGLTEEGKSLFESMSSVYNIKPSMEHYGCMVDLMG 390

Query: 467 QAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGL 526
           +AG   +    +E MP + ++ +W AL   C++H + ++G+++   LI+ +P  S  +  
Sbjct: 391 RAGLLKEAREFIESMPVKPNAAIWGALLNACQLHKHFELGKEIGKILIELDPDHSGRYIH 450

Query: 527 LSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSV 586
           L+SIY+A G+   V +VR  I  R        S I +   VH F   D  HP    +Y +
Sbjct: 451 LASIYAAAGEWNQVVRVRSQIKHRGLLNHPGCSSITLNGVVHEFFAGDGSHPHIQEIYGM 510

Query: 587 LEQLA 591
              LA
Sbjct: 511 PNLLA 515



 Score =  135 bits (341), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 81/349 (23%), Positives = 161/349 (46%), Gaps = 33/349 (9%)

Query: 54  TLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDK 113
           T  F+L+ C+   + +  +++H H+ + +      + +N L+ +Y   G+   A  +F++
Sbjct: 112 TFPFLLKACSALSAFEETQQIHAHI-IKRGFGLEVYATNSLLRVYAISGNIQSAHVLFNQ 170

Query: 114 IPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFY 173
           +P +++ S+N M+ GY   G +  A  +F  M E++V+SW TMI+G+ + G  +E L   
Sbjct: 171 LPTRDIVSWNIMIDGYIKFGNLDMAYKIFQAMPEKNVISWTTMIVGFVRIGMHKEALSLL 230

Query: 174 KVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKC 233
           + +    I  +  + +  L+ C  L  L+  + +H  +       + V+   + D Y KC
Sbjct: 231 QQMLVAGIKPDSITLSCSLSACAGLGALEQGKWIHTYIEKNEIKIDPVLGCVLTDMYVKC 290

Query: 234 GELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYT 293
           GE+  A  +F + + + V  WT ++ G A                               
Sbjct: 291 GEMEKALLVFSKLEKKCVCAWTAIIGGLAI------------------------------ 320

Query: 294 RNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRT-NFRSNT 352
            +G G++AL+ FT+M    I PN  TF++ L AC+     + GK +   +    N + + 
Sbjct: 321 -HGKGREALDWFTQMQKAGINPNSITFTAILTACSHAGLTEEGKSLFESMSSVYNIKPSM 379

Query: 353 IVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDE 401
                ++D+  + G L + R+  +    K N+ +W  +++A   H + E
Sbjct: 380 EHYGCMVDLMGRAGLLKEAREFIESMPVKPNAAIWGALLNACQLHKHFE 428



 Score = 89.7 bits (221), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 93/398 (23%), Positives = 164/398 (41%), Gaps = 88/398 (22%)

Query: 190 GILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCG--ELSDARRLFDETD 247
            +L  C  ++EL    Q+HGQ+L  G + N +  S+++ +YA+     L+  R +FD   
Sbjct: 15  ALLERCSNMKEL---MQIHGQLLKKGTIRNQLTVSTLLVSYARIELVNLAYTRVVFDSIS 71

Query: 248 ARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTR 307
           + + + W TM+  Y+   D E+A  L+++M   +                          
Sbjct: 72  SPNTVIWNTMLRAYSNSNDPEAALLLYHQMLHNS-------------------------- 105

Query: 308 MMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSL--------- 358
                +  N +TF   L AC+++ + +  +Q+H  +I+  F       +SL         
Sbjct: 106 -----VPHNSYTFPFLLKACSALSAFEETQQIHAHIIKRGFGLEVYATNSLLRVYAISGN 160

Query: 359 ----------------------IDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQ 396
                                 ID Y K G L+   ++F     K N + W TMI    +
Sbjct: 161 IQSAHVLFNQLPTRDIVSWNIMIDGYIKFGNLDMAYKIFQAMPEK-NVISWTTMIVGFVR 219

Query: 397 HGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGL---TYFESMTHDLGIIP 453
            G  ++A+ L   M+ + +KPD ITL+  L+AC   G +++G    TY E   +++ I P
Sbjct: 220 IGMHKEALSLLQQMLVAGIKPDSITLSCSLSACAGLGALEQGKWIHTYIEK--NEIKIDP 277

Query: 454 NQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVD-- 511
                  L ++  + G  ++ +    K+  +     W A+ G   IHG    GR+ +D  
Sbjct: 278 VLG--CVLTDMYVKCGEMEKALLVFSKLE-KKCVCAWTAIIGGLAIHGK---GREALDWF 331

Query: 512 ---QLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQL 546
              Q    NP S       ++I +A     L E+ + L
Sbjct: 332 TQMQKAGINPNSIT----FTAILTACSHAGLTEEGKSL 365


>gi|222617261|gb|EEE53393.1| hypothetical protein OsJ_36441 [Oryza sativa Japonica Group]
          Length = 1151

 Score =  308 bits (789), Expect = 5e-81,   Method: Compositional matrix adjust.
 Identities = 169/566 (29%), Positives = 296/566 (52%), Gaps = 67/566 (11%)

Query: 25  LSLISKGQLSEAISSLDLLAQ---RGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLT 81
           L L++ GQ+++   S +L  Q    GIR    T   IL+ C  ++ + LG+++H      
Sbjct: 315 LMLVAFGQINDLAKSFELFCQMQAAGIRPNQFTYPCILRTCTCTREIDLGEQIH------ 368

Query: 82  QRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNL 141
                         S+  K G + D            ++    ++  Y+  G ++ AR +
Sbjct: 369 --------------SLSVKTGFESD------------MYVSGVLIDMYSKYGWLEKARRV 402

Query: 142 FDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEEL 201
            + + E+DVVSW +MI GY +    ++ L  +K +++  I  +    A  ++ C  +  +
Sbjct: 403 LEMLKEKDVVSWTSMIAGYVQHECCKDALAAFKEMQKCGIWPDNIGLASAISGCAGINAM 462

Query: 202 KLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGY 261
           +   Q+H ++ V+G+  +V I                               W  +V+ Y
Sbjct: 463 RQGLQIHARIYVSGYSGDVSI-------------------------------WNALVNLY 491

Query: 262 AKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFS 321
           A+ G +  A   F EM  K+ ++   L++G+ ++GL ++AL++F RM    ++ N  TF 
Sbjct: 492 ARCGRIREAFSSFEEMELKDGITGNGLVSGFAQSGLHEEALKVFMRMDQSGVKHNVFTFV 551

Query: 322 SCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNK 381
           S L A A++  +K GKQ+H  +I+T     T V ++LI +Y KCG   D +  F     +
Sbjct: 552 SALSASANLAEIKQGKQIHARVIKTGHSFETEVGNALISLYGKCGSFEDAKMEFSEMSER 611

Query: 382 ENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTY 441
            N + WNT+I++ +QHG   +A+ LF  M +  +KP+ +T   +L AC+H GLV+EGL+Y
Sbjct: 612 -NEVSWNTIITSCSQHGRGLEALDLFDQMKKEGIKPNDVTFIGVLAACSHVGLVEEGLSY 670

Query: 442 FESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHG 501
           F+SM+ + GI P  +H+AC+I++  +AG  D+    +E+MP   D+ +W  L   C++H 
Sbjct: 671 FKSMSDEYGIRPRPDHYACVIDIFGRAGQLDRAKKFIEEMPIAADAMVWRTLLSACKVHK 730

Query: 502 NIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWI 561
           NI++G      L++  P  SA++ LLS+ Y+   K    ++VR+++ +R  +KE   SWI
Sbjct: 731 NIEVGEFAAKHLLELEPHDSASYVLLSNAYAVTEKWANRDQVRKMMRDRGVRKEPGRSWI 790

Query: 562 EIENKVHAFSVSDSLHPMRDVLYSVL 587
           E++N VHAF V D LHP+ + +Y+ L
Sbjct: 791 EVKNVVHAFFVGDRLHPLAEQIYNFL 816



 Score =  170 bits (431), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 105/371 (28%), Positives = 182/371 (49%), Gaps = 34/371 (9%)

Query: 123 NNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSIS 182
           N ++  Y+  G++  AR +F+ ++ RD VSW  M+ GYA++G  EE L  Y+ + R  + 
Sbjct: 81  NLLIDLYSKNGLVLPARRVFEELSARDNVSWVAMLSGYAQNGLGEEALGLYRQMHRAGVV 140

Query: 183 CNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRL 242
              +  + +L+ C K E     R +H Q    GF S + + ++++  Y +CG      RL
Sbjct: 141 PTPYVLSSVLSSCTKAELFAQGRLIHAQGYKHGFCSEIFVGNAVITLYLRCGSF----RL 196

Query: 243 FDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKAL 302
                                      A ++F +MP ++ V++ TLI+G+ + G G+ AL
Sbjct: 197 ---------------------------AERVFCDMPHRDTVTFNTLISGHAQCGHGEHAL 229

Query: 303 ELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMY 362
           E+F  M    + P+  T SS L ACAS+  L+ G Q+H +L +    S+ I+  SL+D+Y
Sbjct: 230 EIFEEMQFSGLSPDCVTISSLLAACASLGDLQKGTQLHSYLFKAGISSDYIMEGSLLDLY 289

Query: 363 SKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITL 422
            KCG +     +F+ +D + N +LWN M+ A  Q     ++  LF  M  + ++P++ T 
Sbjct: 290 VKCGDVETALVIFNSSD-RTNVVLWNLMLVAFGQINDLAKSFELFCQMQAAGIRPNQFTY 348

Query: 423 AVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMP 482
             IL  CT +  +  G     S++   G   +      LI++ ++ G  ++    LE M 
Sbjct: 349 PCILRTCTCTREIDLG-EQIHSLSVKTGFESDMYVSGVLIDMYSKYGWLEKARRVLE-ML 406

Query: 483 YEHDSYLWNAL 493
            E D   W ++
Sbjct: 407 KEKDVVSWTSM 417



 Score =  159 bits (403), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 108/452 (23%), Positives = 196/452 (43%), Gaps = 75/452 (16%)

Query: 35  EAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHL 94
           EA+     + + G+      L+ +L  C +++    G+ +H             F+ N +
Sbjct: 126 EALGLYRQMHRAGVVPTPYVLSSVLSSCTKAELFAQGRLIHAQ-GYKHGFCSEIFVGNAV 184

Query: 95  ISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWN 154
           I++Y +CGS                                + A  +F +M  RD V++N
Sbjct: 185 ITLYLRCGS-------------------------------FRLAERVFCDMPHRDTVTFN 213

Query: 155 TMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVT 214
           T+I G+A+ G  E  L+ ++ ++   +S +  + + +L  C  L +L+   Q+H  +   
Sbjct: 214 TLISGHAQCGHGEHALEIFEEMQFSGLSPDCVTISSLLAACASLGDLQKGTQLHSYLFKA 273

Query: 215 GFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLF 274
           G  S+ ++  S++D Y KCG++  A  +F+ +D  +V+ W  M+  + ++ D+       
Sbjct: 274 GISSDYIMEGSLLDLYVKCGDVETALVIFNSSDRTNVVLWNLMLVAFGQINDL------- 326

Query: 275 NEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLK 334
                                    K+ ELF +M    IRPNQ T+   L  C     + 
Sbjct: 327 ------------------------AKSFELFCQMQAAGIRPNQFTYPCILRTCTCTREID 362

Query: 335 HGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISAL 394
            G+Q+H   ++T F S+  V   LIDMYSK G L   R+V ++   K + + W +MI+  
Sbjct: 363 LGEQIHSLSVKTGFESDMYVSGVLIDMYSKYGWLEKARRVLEMLKEK-DVVSWTSMIAGY 421

Query: 395 TQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGL-----TYFESMTHDL 449
            QH   + A+  F +M +  + PD I LA  ++ C     +++GL      Y    + D+
Sbjct: 422 VQHECCKDALAAFKEMQKCGIWPDNIGLASAISGCAGINAMRQGLQIHARIYVSGYSGDV 481

Query: 450 GIIPNQEHHACLIELLAQAGCSDQLMNQLEKM 481
            I         L+ L A+ G   +  +  E+M
Sbjct: 482 SIW------NALVNLYARCGRIREAFSSFEEM 507



 Score =  115 bits (288), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 95/417 (22%), Positives = 177/417 (42%), Gaps = 74/417 (17%)

Query: 202 KLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGY 261
           ++  ++H + +  G     ++ + ++D Y+K G +  ARR+F+E  ARD ++W  M+SGY
Sbjct: 59  QVVPEIHAKAVTRGLGKYRIVGNLLIDLYSKNGLVLPARRVFEELSARDNVSWVAMLSGY 118

Query: 262 AKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFS 321
           A+                               NGLG++AL L+ +M    + P  +  S
Sbjct: 119 AQ-------------------------------NGLGEEALGLYRQMHRAGVVPTPYVLS 147

Query: 322 SCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNK 381
           S L +C        G+ +H    +  F S   V +++I +Y +CG      +VF    ++
Sbjct: 148 SVLSSCTKAELFAQGRLIHAQGYKHGFCSEIFVGNAVITLYLRCGSFRLAERVFCDMPHR 207

Query: 382 ENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTY 441
            +++ +NT+IS   Q G+ E A+ +F +M  S + PD +T++ +L AC   G +Q+G T 
Sbjct: 208 -DTVTFNTLISGHAQCGHGEHALEIFEEMQFSGLSPDCVTISSLLAACASLGDLQKG-TQ 265

Query: 442 FESMTHDLGIIPNQEHHACLIELLAQAG----------CSD------------------- 472
             S     GI  +      L++L  + G           SD                   
Sbjct: 266 LHSYLFKAGISSDYIMEGSLLDLYVKCGDVETALVIFNSSDRTNVVLWNLMLVAFGQIND 325

Query: 473 -----QLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSA-THGL 526
                +L  Q++      + + +  +   C     ID+G ++    +    +S     G+
Sbjct: 326 LAKSFELFCQMQAAGIRPNQFTYPCILRTCTCTREIDLGEQIHSLSVKTGFESDMYVSGV 385

Query: 527 LSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIE-IENKVHAFSVSDSLHPMRDV 582
           L  +YS  G    +EK R+++     K++  +SW   I   V      D+L   +++
Sbjct: 386 LIDMYSKYG---WLEKARRVLE--MLKEKDVVSWTSMIAGYVQHECCKDALAAFKEM 437



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 67/290 (23%), Positives = 117/290 (40%), Gaps = 46/290 (15%)

Query: 12  RKNLPNNCLIQSFLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLG 71
           +  +  N L+  F      G   EA+     + Q G++    T    L   A    +K G
Sbjct: 510 KDGITGNGLVSGF---AQSGLHEEALKVFMRMDQSGVKHNVFTFVSALSASANLAEIKQG 566

Query: 72  KRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYAN 131
           K++H  +  T     T  + N LIS+Y KCGS  DA+  F ++  +N  S+N +++  + 
Sbjct: 567 KQIHARVIKTGHSFETE-VGNALISLYGKCGSFEDAKMEFSEMSERNEVSWNTIITSCSQ 625

Query: 132 LGMMKHARNLFDNMAERDVVSWNTMIIGYAKS----GAVEEGLKFYKVLRRFSISCNEFS 187
            G    A +LFD M +  +   +   IG   +    G VEEGL ++K +       +E+ 
Sbjct: 626 HGRGLEALDLFDQMKKEGIKPNDVTFIGVLAACSHVGLVEEGLSYFKSMS------DEYG 679

Query: 188 FAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETD 247
                            R  H               + ++D + + G+L  A++  +E  
Sbjct: 680 IR--------------PRPDH--------------YACVIDIFGRAGQLDRAKKFIEEMP 711

Query: 248 -ARDVLTWTTMVSG---YAKLGDMESASKLFNEMPEKNPVSWTTLIAGYT 293
            A D + W T++S    +  +   E A+K   E+   +  S+  L   Y 
Sbjct: 712 IAADAMVWRTLLSACKVHKNIEVGEFAAKHLLELEPHDSASYVLLSNAYA 761


>gi|345505230|gb|AEN99839.1| chlororespiratory reduction 4 [Nasturtium officinale]
          Length = 614

 Score =  308 bits (789), Expect = 5e-81,   Method: Compositional matrix adjust.
 Identities = 176/534 (32%), Positives = 290/534 (54%), Gaps = 43/534 (8%)

Query: 42  LLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKC 101
           L+ + GI +   + + +L+ C+    LK G ++H  L+ T   +   FL N LI +Y KC
Sbjct: 112 LMLENGISVDKFSFSLVLKACSRLGFLKGGMQIHGFLRKTGIWS-DLFLQNCLIGLYLKC 170

Query: 102 GSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAE--RDVVSWNTMIIG 159
           G    AR++FD++P ++  SYN+M+ GY   G+++ AR LFD M    ++++SWN+MI G
Sbjct: 171 GCLGFARQIFDRMPQRDSVSYNSMIDGYIKCGLIESARELFDLMPREMKNLISWNSMISG 230

Query: 160 YAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSN 219
           YA++    +G+         +I+   F+         ++ E                  +
Sbjct: 231 YAQT---SDGV---------NIASKLFA---------EMPE-----------------KD 252

Query: 220 VVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPE 279
           ++  +S++  Y K G + DA+ LF     RDV+TW TM+ GYAKLG +  A  LF++MP 
Sbjct: 253 LISWNSLIYGYVKHGRMEDAKDLFHVMPRRDVVTWATMIDGYAKLGFVHKAKTLFDQMPH 312

Query: 280 KNPVSWTTLIAGYTRNGLGQKALELFTRM-MILRIRPNQHTFSSCLCACASIVSLKHGKQ 338
           ++ V++ +++AGY +N    +ALE+F+ M     + P++ T    L A A +  L     
Sbjct: 313 RDVVAYNSMMAGYVQNRHHMEALEIFSDMEKESHLTPDETTLVIVLSAIAQLGQLSKAMD 372

Query: 339 VHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHG 398
           +H +++   F     +  +LIDMYSKCG +     VF+  +NK     WN MI  L  HG
Sbjct: 373 MHLYIVEKQFYLGGKLGVALIDMYSKCGSIQQAMCVFEGIENKSIDH-WNAMIGGLAIHG 431

Query: 399 YDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHH 458
             E A  +  ++ R S++PD IT   +LNAC+HSGLV+EGL  FE M     I P  +H+
Sbjct: 432 LGESAFNILLEIERRSIEPDYITFVGVLNACSHSGLVKEGLLCFELMRRKHKIEPRLQHY 491

Query: 459 ACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNP 518
            C+++LL++ G  +   N +E+MP E +  +W      C  H   ++G  V   LI Q  
Sbjct: 492 GCMVDLLSRCGSIELAKNLIEEMPIEPNDVIWRTFLTACNHHKEFEIGELVAKHLILQAG 551

Query: 519 QSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSV 572
            + +++ LLS++Y++ G+ + V  VR ++ ER+ +K    SWIE++ +VH F V
Sbjct: 552 YNPSSYVLLSNMYASFGRWKDVRNVRTMMKERKLQKVPGCSWIELDGRVHEFFV 605



 Score =  142 bits (359), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 103/366 (28%), Positives = 188/366 (51%), Gaps = 31/366 (8%)

Query: 148 RDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQV 207
           +D   WN +I  ++        L ++ ++    IS ++FSF+ +L  C +L  LK   Q+
Sbjct: 85  KDPFLWNLVIKSHSHGVDPRRALLWFCLMLENGISVDKFSFSLVLKACSRLGFLKGGMQI 144

Query: 208 HGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDM 267
           HG +  TG  S++ + + ++  Y KCG L  AR++FD    RD +++ +M+ GY K G +
Sbjct: 145 HGFLRKTGIWSDLFLQNCLIGLYLKCGCLGFARQIFDRMPQRDSVSYNSMIDGYIKCGLI 204

Query: 268 ESASKLFNEMPE--KNPVSWTTLIAGYTRNGLGQK-ALELFTRMMILRIRPNQHTFSSCL 324
           ESA +LF+ MP   KN +SW ++I+GY +   G   A +LF  M      P +      L
Sbjct: 205 ESARELFDLMPREMKNLISWNSMISGYAQTSDGVNIASKLFAEM------PEKD-----L 253

Query: 325 CACASIV--SLKHGKQVHGF-LIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNK 381
            +  S++   +KHG+      L     R + +  +++ID Y+K G ++  + +FD   ++
Sbjct: 254 ISWNSLIYGYVKHGRMEDAKDLFHVMPRRDVVTWATMIDGYAKLGFVHKAKTLFDQMPHR 313

Query: 382 ENSMLWNTMISALTQHGYDEQAIRLFHDMVRSS-VKPDKITLAVILNACTHSGLVQEGLT 440
           +  + +N+M++   Q+ +  +A+ +F DM + S + PD+ TL ++L+A    G +     
Sbjct: 314 D-VVAYNSMMAGYVQNRHHMEALEIFSDMEKESHLTPDETTLVIVLSAIAQLGQLS---- 368

Query: 441 YFESMTHDLGIIPNQEH-----HACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHG 495
             ++M   L I+  Q +        LI++ ++ G   Q M   E +  +   + WNA+ G
Sbjct: 369 --KAMDMHLYIVEKQFYLGGKLGVALIDMYSKCGSIQQAMCVFEGIENKSIDH-WNAMIG 425

Query: 496 VCRIHG 501
              IHG
Sbjct: 426 GLAIHG 431



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 66/207 (31%), Positives = 105/207 (50%), Gaps = 21/207 (10%)

Query: 206 QVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLG 265
           ++H +++ TGF+ N  +++ IV A+A      D+RR +    AR V      V  +A  G
Sbjct: 31  KIHARLITTGFIKNSNLTTKIVVAFA------DSRRPYLAEFARYVFR-EYHVCSFAP-G 82

Query: 266 DMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLC 325
           D+            K+P  W  +I  ++     ++AL  F  M+   I  ++ +FS  L 
Sbjct: 83  DV------------KDPFLWNLVIKSHSHGVDPRRALLWFCLMLENGISVDKFSFSLVLK 130

Query: 326 ACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSM 385
           AC+ +  LK G Q+HGFL +T   S+  + + LI +Y KCGCL   RQ+FD    ++ S+
Sbjct: 131 ACSRLGFLKGGMQIHGFLRKTGIWSDLFLQNCLIGLYLKCGCLGFARQIFDRMPQRD-SV 189

Query: 386 LWNTMISALTQHGYDEQAIRLFHDMVR 412
            +N+MI    + G  E A  LF  M R
Sbjct: 190 SYNSMIDGYIKCGLIESARELFDLMPR 216


>gi|345505222|gb|AEN99835.1| chlororespiratory reduction 4, partial [Lepidium sativum]
          Length = 597

 Score =  308 bits (789), Expect = 5e-81,   Method: Compositional matrix adjust.
 Identities = 177/534 (33%), Positives = 291/534 (54%), Gaps = 43/534 (8%)

Query: 42  LLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKC 101
           L+ + G+ +   +L+ +L+ C+    +K G  +H  L+ T   +   FL N LI +Y KC
Sbjct: 95  LMLENGVSVDKFSLSLVLKACSRLGFVKAGMXIHGFLRKTGLWS-DLFLQNCLIGLYLKC 153

Query: 102 GSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAE--RDVVSWNTMIIG 159
           G    +R+VFD++P ++  SYN+M+ GY   G+++ AR LFD M +  ++++SWN +I G
Sbjct: 154 GCLGYSRQVFDRMPQRDSVSYNSMIDGYVKCGLIESARELFDLMPKEMKNLISWNCLISG 213

Query: 160 YAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSN 219
           YA++    +G+         +I+   FS         ++ E                  +
Sbjct: 214 YAQT---SDGV---------NIASKLFS---------EMPE-----------------KD 235

Query: 220 VVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPE 279
           ++  +S++D Y K G + DA+ LFD    RDV+TW TM+ GYAKLG +  A  LF+++P 
Sbjct: 236 LISWNSMIDGYVKHGRIEDAKDLFDVMPRRDVITWATMIDGYAKLGFIHQAKTLFDQIPH 295

Query: 280 KNPVSWTTLIAGYTRNGLGQKALELFTRM-MILRIRPNQHTFSSCLCACASIVSLKHGKQ 338
           ++ V++ +++AGY +N    +ALELF +M     + P++ T    L A A +  L     
Sbjct: 296 RDVVAYNSMMAGYVQNKYHMEALELFIKMEKESHLSPDETTLVIVLSAIAQLGRLSKAMD 355

Query: 339 VHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHG 398
           +H ++++  F     +  +LIDMYSKCG +     VF   +NK N   WN +I  L  HG
Sbjct: 356 MHFYIVKKQFFIGGKLGVALIDMYSKCGSIQHAMLVFKGLENK-NIDHWNAIIGGLAIHG 414

Query: 399 YDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHH 458
               A  +   + R S+KPD IT   +LNAC+HSGLV+EGL  FE M     I P  +H+
Sbjct: 415 LGGPAFDMLLQIERLSIKPDDITFIGVLNACSHSGLVKEGLLCFELMRRKHKIEPRLQHY 474

Query: 459 ACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNP 518
            C++++L+++G  +     +EKMP E +  +W      C  H   +MG  V   LI Q  
Sbjct: 475 GCMVDILSRSGSIELAKILIEKMPIEPNDVIWRTFLTACSHHKEFEMGELVAKHLILQAG 534

Query: 519 QSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSV 572
            + +++ LLS++Y++ G  + V +VR ++ ER+ +K    SWIE++ +VH F V
Sbjct: 535 YNPSSYVLLSNMYASCGMWKDVRRVRTMMKERKIQKIPGCSWIELDGRVHEFFV 588



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 103/376 (27%), Positives = 187/376 (49%), Gaps = 30/376 (7%)

Query: 149 DVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVH 208
           D   WN +I  ++        L  + ++    +S ++FS + +L  C +L  +K    +H
Sbjct: 69  DPFLWNAVIKSHSHGTDPRRSLFLFCLMLENGVSVDKFSLSLVLKACSRLGFVKAGMXIH 128

Query: 209 GQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDME 268
           G +  TG  S++ + + ++  Y KCG L  +R++FD    RD +++ +M+ GY K G +E
Sbjct: 129 GFLRKTGLWSDLFLQNCLIGLYLKCGCLGYSRQVFDRMPQRDSVSYNSMIDGYVKCGLIE 188

Query: 269 SASKLFNEMPE--KNPVSWTTLIAGYTRNGLGQK-ALELFTRMMILRIRPNQHTFSSCLC 325
           SA +LF+ MP+  KN +SW  LI+GY +   G   A +LF+ M      P +      L 
Sbjct: 189 SARELFDLMPKEMKNLISWNCLISGYAQTSDGVNIASKLFSEM------PEKD-----LI 237

Query: 326 ACASIVS--LKHGK-QVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKE 382
           +  S++   +KHG+ +    L     R + I  +++ID Y+K G ++  + +FD   +++
Sbjct: 238 SWNSMIDGYVKHGRIEDAKDLFDVMPRRDVITWATMIDGYAKLGFIHQAKTLFDQIPHRD 297

Query: 383 NSMLWNTMISALTQHGYDEQAIRLFHDMVRSS-VKPDKITLAVILNACTHSGLVQEGLTY 441
             + +N+M++   Q+ Y  +A+ LF  M + S + PD+ TL ++L+A    G + + +  
Sbjct: 298 -VVAYNSMMAGYVQNKYHMEALELFIKMEKESHLSPDETTLVIVLSAIAQLGRLSKAMDM 356

Query: 442 FESMTHDLGIIPNQEHHACLIELLAQAGCSDQLM---NQLEKMPYEHDSYLWNALHGVCR 498
              +      I  +   A LI++ ++ G     M     LE    +H    WNA+ G   
Sbjct: 357 HFYIVKKQFFIGGKLGVA-LIDMYSKCGSIQHAMLVFKGLENKNIDH----WNAIIGGLA 411

Query: 499 IHGNIDMGRKVVDQLI 514
           IHG   +G    D L+
Sbjct: 412 IHG---LGGPAFDMLL 424



 Score = 79.3 bits (194), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 58/207 (28%), Positives = 100/207 (48%), Gaps = 21/207 (10%)

Query: 206 QVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLG 265
           ++H +++ TG + N  +++ IV A+A       +RR +    AR V     + S     G
Sbjct: 14  KIHARLITTGVIKNSNLTTRIVLAFA------SSRRQYLAEFARCVFEEHHVYS--LPYG 65

Query: 266 DMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLC 325
           + E            +P  W  +I  ++     +++L LF  M+   +  ++ + S  L 
Sbjct: 66  ETE------------DPFLWNAVIKSHSHGTDPRRSLFLFCLMLENGVSVDKFSLSLVLK 113

Query: 326 ACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSM 385
           AC+ +  +K G  +HGFL +T   S+  + + LI +Y KCGCL   RQVFD    ++ S+
Sbjct: 114 ACSRLGFVKAGMXIHGFLRKTGLWSDLFLQNCLIGLYLKCGCLGYSRQVFDRMPQRD-SV 172

Query: 386 LWNTMISALTQHGYDEQAIRLFHDMVR 412
            +N+MI    + G  E A  LF  M +
Sbjct: 173 SYNSMIDGYVKCGLIESARELFDLMPK 199



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 63/263 (23%), Positives = 118/263 (44%), Gaps = 25/263 (9%)

Query: 338 QVHGFLIRTNFRSNTIVMSSLIDMYSK---------CGCLNDGRQVFDLT-DNKENSMLW 387
           ++H  LI T    N+ + + ++  ++            C+ +   V+ L     E+  LW
Sbjct: 14  KIHARLITTGVIKNSNLTTRIVLAFASSRRQYLAEFARCVFEEHHVYSLPYGETEDPFLW 73

Query: 388 NTMISALTQHGYD-EQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMT 446
           N +I + + HG D  +++ LF  M+ + V  DK +L+++L AC+  G V+ G+       
Sbjct: 74  NAVIKSHS-HGTDPRRSLFLFCLMLENGVSVDKFSLSLVLKACSRLGFVKAGMX-IHGFL 131

Query: 447 HDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMG 506
              G+  +     CLI L  + GC        ++MP + DS  +N++       G I+  
Sbjct: 132 RKTGLWSDLFLQNCLIGLYLKCGCLGYSRQVFDRMP-QRDSVSYNSMIDGYVKCGLIESA 190

Query: 507 RKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIE-IEN 565
           R++ D L+ +  ++  +   L S Y+    G  V    +L +E    ++  ISW   I+ 
Sbjct: 191 RELFD-LMPKEMKNLISWNCLISGYAQTSDG--VNIASKLFSE--MPEKDLISWNSMIDG 245

Query: 566 KVHAFSVSDS-----LHPMRDVL 583
            V    + D+     + P RDV+
Sbjct: 246 YVKHGRIEDAKDLFDVMPRRDVI 268


>gi|449441574|ref|XP_004138557.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Cucumis sativus]
          Length = 766

 Score =  308 bits (789), Expect = 6e-81,   Method: Compositional matrix adjust.
 Identities = 156/474 (32%), Positives = 266/474 (56%), Gaps = 37/474 (7%)

Query: 133 GMMKHARNLFDN--MAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAG 190
           G ++ AR++F++  +  R    WN MI GY +SG  E+ L+ +  + +  I  + +++  
Sbjct: 321 GSLQEARSIFNSHFITCRFNAPWNAMISGYLRSGFNEKALELFAKMCQNDIYLDHYTYCS 380

Query: 191 ILTICVKLEELKLTRQVHGQVLVTGFLSNVV-ISSSIVDAYAKCGELSDARRLFDETDAR 249
           +      L+ L L ++VH + + +G   N V IS+++ +AYAKCG               
Sbjct: 381 VFNAIAALKCLSLGKKVHARAIKSGLEVNYVSISNAVANAYAKCGS-------------- 426

Query: 250 DVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMM 309
                            +E   K+FN M +++ +SWT+L+  Y++     KA+E+F+ M 
Sbjct: 427 -----------------LEDVRKVFNRMEDRDLISWTSLVTAYSQCSEWDKAIEIFSNMR 469

Query: 310 ILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLN 369
              I PNQ TFSS L +CA++  L++G+QVHG + +     +  + S+L+DMY+KCGCL 
Sbjct: 470 AEGIAPNQFTFSSVLVSCANLCLLEYGQQVHGIICKVGLDMDKCIESALVDMYAKCGCLG 529

Query: 370 DGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNAC 429
           D ++VF+   N + ++ W  +I+   QHG  + A++LF  MV+  V+P+ +T   +L AC
Sbjct: 530 DAKKVFNRISNAD-TVSWTAIIAGHAQHGIVDDALQLFRRMVQLGVEPNAVTFLCVLFAC 588

Query: 430 THSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYL 489
           +H GLV+EGL YF+ M    G++P  EH+AC+++LL++ G  +  M  + +MP E +  +
Sbjct: 589 SHGGLVEEGLQYFKLMKKTYGLVPEMEHYACIVDLLSRVGHLNDAMEFISRMPVEPNEMV 648

Query: 490 WNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINE 549
           W  L G CR+HGN+++G     +++    ++SAT+ LLS+ Y   G  +    +R L+ E
Sbjct: 649 WQTLLGACRVHGNVELGELAAQKILSFKAENSATYVLLSNTYIESGSYKDGLSLRHLMKE 708

Query: 550 RQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQMG--EDAPSL 601
           +  KKE   SWI +   +H F   D  HP +D +Y+ LE+L  ++   +D P L
Sbjct: 709 QGVKKEPGCSWISVNGTLHKFYAGDQQHPEKDKIYAKLEELKLKLISLDDVPDL 762



 Score =  179 bits (453), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 115/382 (30%), Positives = 183/382 (47%), Gaps = 66/382 (17%)

Query: 50  LPAETLAFILQQCAESKSLKLGKRVH-LHLKLTQRKTPTTFLSNHLISMYFKCGSDVDAR 108
           L  + L  +L+ C +++ LK  K VH   LK       +  L NH+   Y KC SD+DA 
Sbjct: 66  LQIQPLVDLLRDCVDARFLKQAKTVHGFLLKSKFSNHHSLVLLNHVAHAYSKC-SDIDA- 123

Query: 109 KVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEE 168
                                        A  LFD M++R+  SW  +I G A++G   +
Sbjct: 124 -----------------------------ACRLFDQMSQRNTFSWTVLIAGLAENGLFLD 154

Query: 169 GLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVD 228
           G +F+  ++   I  ++F+++GIL IC+ L+ ++L   VH Q+++ GF S+  +S     
Sbjct: 155 GFEFFCEMQSQGIFPDQFAYSGILQICIGLDSIELGNMVHAQIVIRGFTSHTFVS----- 209

Query: 229 AYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTL 288
                                     T +++ YAKL ++E + K+FN M E N VSW  +
Sbjct: 210 --------------------------TALLNMYAKLQEIEDSYKVFNTMTEVNVVSWNAM 243

Query: 289 IAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNF 348
           I G+T N L   A +LF RMM   + P+  TF     A   +  +   K+V G+ +    
Sbjct: 244 ITGFTSNDLYLDAFDLFLRMMGEGVTPDAQTFIGVAKAIGMLRDVNKAKEVSGYALELGV 303

Query: 349 RSNTIVMSSLIDMYSKCGCLNDGRQVFD--LTDNKENSMLWNTMISALTQHGYDEQAIRL 406
            SNT+V ++LIDM SKCG L + R +F+      + N+  WN MIS   + G++E+A+ L
Sbjct: 304 DSNTLVGTALIDMNSKCGSLQEARSIFNSHFITCRFNAP-WNAMISGYLRSGFNEKALEL 362

Query: 407 FHDMVRSSVKPDKITLAVILNA 428
           F  M ++ +  D  T   + NA
Sbjct: 363 FAKMCQNDIYLDHYTYCSVFNA 384



 Score =  146 bits (368), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 107/430 (24%), Positives = 186/430 (43%), Gaps = 67/430 (15%)

Query: 12  RKNLPNNCLIQSFLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLG 71
           R N P N +I  +L     G   +A+     + Q  I L   T   +    A  K L LG
Sbjct: 338 RFNAPWNAMISGYLR---SGFNEKALELFAKMCQNDIYLDHYTYCSVFNAIAALKCLSLG 394

Query: 72  KRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYAN 131
           K+VH                               AR +   + V  +   N + + YA 
Sbjct: 395 KKVH-------------------------------ARAIKSGLEVNYVSISNAVANAYAK 423

Query: 132 LGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGI 191
            G ++  R +F+ M +RD++SW +++  Y++    ++ ++ +  +R   I+ N+F+F+ +
Sbjct: 424 CGSLEDVRKVFNRMEDRDLISWTSLVTAYSQCSEWDKAIEIFSNMRAEGIAPNQFTFSSV 483

Query: 192 LTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDV 251
           L  C  L  L+  +QVHG +   G   +  I S++VD YAKCG L DA+++F+     D 
Sbjct: 484 LVSCANLCLLEYGQQVHGIICKVGLDMDKCIESALVDMYAKCGCLGDAKKVFNRISNADT 543

Query: 252 LTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMIL 311
           ++WT +++G+A+ G ++ A                               L+LF RM+ L
Sbjct: 544 VSWTAIIAGHAQHGIVDDA-------------------------------LQLFRRMVQL 572

Query: 312 RIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRT-NFRSNTIVMSSLIDMYSKCGCLND 370
            + PN  TF   L AC+    ++ G Q    + +T          + ++D+ S+ G LND
Sbjct: 573 GVEPNAVTFLCVLFACSHGGLVEEGLQYFKLMKKTYGLVPEMEHYACIVDLLSRVGHLND 632

Query: 371 GRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACT 430
             +       + N M+W T++ A   HG  E    L    + S    +  T  ++ N   
Sbjct: 633 AMEFISRMPVEPNEMVWQTLLGACRVHGNVELG-ELAAQKILSFKAENSATYVLLSNTYI 691

Query: 431 HSGLVQEGLT 440
            SG  ++GL+
Sbjct: 692 ESGSYKDGLS 701



 Score = 55.5 bits (132), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 40/164 (24%), Positives = 71/164 (43%), Gaps = 17/164 (10%)

Query: 327 CASIVSLKHGKQVHGFLIRTNFRS--NTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENS 384
           C     LK  K VHGFL+++ F +  + ++++ +   YSKC  ++   ++FD    + N+
Sbjct: 78  CVDARFLKQAKTVHGFLLKSKFSNHHSLVLLNHVAHAYSKCSDIDAACRLFDQMSQR-NT 136

Query: 385 MLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFES 444
             W  +I+ L ++G        F +M    + PD+   + IL  C     ++ G     +
Sbjct: 137 FSWTVLIAGLAENGLFLDGFEFFCEMQSQGIFPDQFAYSGILQICIGLDSIELG-----N 191

Query: 445 MTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSY 488
           M H   +I     H  +         S  L+N   K+    DSY
Sbjct: 192 MVHAQIVIRGFTSHTFV---------STALLNMYAKLQEIEDSY 226


>gi|224140549|ref|XP_002323645.1| predicted protein [Populus trichocarpa]
 gi|222868275|gb|EEF05406.1| predicted protein [Populus trichocarpa]
          Length = 682

 Score =  308 bits (788), Expect = 7e-81,   Method: Compositional matrix adjust.
 Identities = 178/593 (30%), Positives = 300/593 (50%), Gaps = 65/593 (10%)

Query: 3   SNFSPRGINRKNLPNNCLIQSFL-SLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQ 61
           +N+S R +++   PN  L  + +  L+      E+I     + + G+   + T  F+L+ 
Sbjct: 58  TNYSFRILDQTKEPNIFLFNTMIRGLVLNDCFQESIEIYHSMRKEGLSPDSFTFPFVLKA 117

Query: 62  CAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFS 121
           CA     +LG ++H                    S+  K G + DA   F KI + NL  
Sbjct: 118 CARVLDSELGVKMH--------------------SLVVKAGCEADA---FVKISLINL-- 152

Query: 122 YNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSI 181
                  Y   G + +A  +FD++ +++  SW   I GY   G   E +  ++ L    +
Sbjct: 153 -------YTKCGFIDNAFKVFDDIPDKNFASWTATISGYVGVGKCREAIDMFRRLLEMGL 205

Query: 182 SCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARR 241
             + FS   +L+ C +  +L+    +   +   G + NV +++++VD             
Sbjct: 206 RPDSFSLVEVLSACKRTGDLRSGEWIDEYITENGMVRNVFVATALVDF------------ 253

Query: 242 LFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKA 301
                              Y K G+ME A  +F+ M EKN VSW+++I GY  NGL ++A
Sbjct: 254 -------------------YGKCGNMERARSVFDGMLEKNIVSWSSMIQGYASNGLPKEA 294

Query: 302 LELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDM 361
           L+LF +M+   ++P+ +     LC+CA + +L+ G      +    F  N+++ ++LIDM
Sbjct: 295 LDLFFKMLNEGLKPDCYAMVGVLCSCARLGALELGDWASNLINGNEFLDNSVLGTALIDM 354

Query: 362 YSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKIT 421
           Y+KCG ++   +VF     K++ ++WN  IS L   G+ + A+ LF  M +S +KPD+ T
Sbjct: 355 YAKCGRMDRAWEVFRGM-RKKDRVVWNAAISGLAMSGHVKDALGLFGQMEKSGIKPDRNT 413

Query: 422 LAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKM 481
              +L ACTH+GLV+EG  YF SM     + P  EH+ C+++LL +AGC D+    ++ M
Sbjct: 414 FVGLLCACTHAGLVEEGRRYFNSMECVFTLTPEIEHYGCMVDLLGRAGCLDEAHQLIKSM 473

Query: 482 PYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVE 541
           P E ++ +W AL G CR+H +  +   V+ +LI   P  S  + LLS+IY+A  K     
Sbjct: 474 PMEANAIVWGALLGGCRLHRDTQLVEVVLKKLIALEPWHSGNYVLLSNIYAASHKWEEAA 533

Query: 542 KVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQM 594
           K+R +++ER  KK    SWIE++  VH F V D+ HP+ + +Y+ L +LA  +
Sbjct: 534 KIRSIMSERGVKKIPGYSWIEVDGVVHQFLVGDTSHPLSEKIYAKLGELAKDL 586



 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 72/296 (24%), Positives = 139/296 (46%), Gaps = 16/296 (5%)

Query: 264 LGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSC 323
            G+   + ++ ++  E N   + T+I G   N   Q+++E++  M    + P+  TF   
Sbjct: 55  FGNTNYSFRILDQTKEPNIFLFNTMIRGLVLNDCFQESIEIYHSMRKEGLSPDSFTFPFV 114

Query: 324 LCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKEN 383
           L ACA ++  + G ++H  +++    ++  V  SLI++Y+KCG +++  +VFD   +K N
Sbjct: 115 LKACARVLDSELGVKMHSLVVKAGCEADAFVKISLINLYTKCGFIDNAFKVFDDIPDK-N 173

Query: 384 SMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFE 443
              W   IS     G   +AI +F  ++   ++PD  +L  +L+AC  +G ++ G    E
Sbjct: 174 FASWTATISGYVGVGKCREAIDMFRRLLEMGLRPDSFSLVEVLSACKRTGDLRSGEWIDE 233

Query: 444 SMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNI 503
            +T + G++ N      L++   + G  ++  +  + M  E +   W+++     I G  
Sbjct: 234 YITEN-GMVRNVFVATALVDFYGKCGNMERARSVFDGM-LEKNIVSWSSM-----IQGYA 286

Query: 504 DMG--RKVVDQLIDQ-----NPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQF 552
             G  ++ +D           P   A  G+L S  + LG   L +    LIN  +F
Sbjct: 287 SNGLPKEALDLFFKMLNEGLKPDCYAMVGVLCSC-ARLGALELGDWASNLINGNEF 341



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 46/183 (25%), Positives = 79/183 (43%), Gaps = 7/183 (3%)

Query: 333 LKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMIS 392
           LKH K +H  L+R     +T +++ ++      G  N   ++ D T  + N  L+NTMI 
Sbjct: 23  LKHLKHIHAALLRLGLDEDTYLLNKVLRFSFNFGNTNYSFRILDQT-KEPNIFLFNTMIR 81

Query: 393 ALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGII 452
            L  +   +++I ++H M +  + PD  T   +L AC    L  E      S+    G  
Sbjct: 82  GLVLNDCFQESIEIYHSMRKEGLSPDSFTFPFVLKACARV-LDSELGVKMHSLVVKAGCE 140

Query: 453 PNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNA----LHGVCRIHGNIDMGRK 508
            +      LI L  + G  D      + +P + +   W A      GV +    IDM R+
Sbjct: 141 ADAFVKISLINLYTKCGFIDNAFKVFDDIP-DKNFASWTATISGYVGVGKCREAIDMFRR 199

Query: 509 VVD 511
           +++
Sbjct: 200 LLE 202


>gi|297728297|ref|NP_001176512.1| Os11g0433100 [Oryza sativa Japonica Group]
 gi|62701919|gb|AAX92992.1| hypothetical protein LOC_Os11g24530 [Oryza sativa Japonica Group]
 gi|77550326|gb|ABA93123.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|125534237|gb|EAY80785.1| hypothetical protein OsI_35965 [Oryza sativa Indica Group]
 gi|125577016|gb|EAZ18238.1| hypothetical protein OsJ_33779 [Oryza sativa Japonica Group]
 gi|255680048|dbj|BAH95240.1| Os11g0433100 [Oryza sativa Japonica Group]
          Length = 622

 Score =  308 bits (788), Expect = 7e-81,   Method: Compositional matrix adjust.
 Identities = 168/522 (32%), Positives = 287/522 (54%), Gaps = 51/522 (9%)

Query: 92  NHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVV 151
           N ++  Y   G   DA  +F+++PV++  S+N +L G    G ++ AR +F+ M  RDV+
Sbjct: 139 NTMLEAYTAVGRVEDASALFNRMPVRDAGSWNILLCGLVRSGSLERARKMFERMPVRDVM 198

Query: 152 SWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQV 211
           SW TMI G A++G+V++    +  +                                   
Sbjct: 199 SWTTMISGLARNGSVDDAWVLFDAMPE--------------------------------- 225

Query: 212 LVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESAS 271
                  NVV  ++++  YA+   + +A  LF +   RDV +W  M++G+ +  D++SA 
Sbjct: 226 ------RNVVSWNAMISGYARNHRIEEALDLFTKMPIRDVASWNIMITGFIQNKDLKSAR 279

Query: 272 KLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIV 331
           +LF+EMP++N ++WTT++ GY +    + AL+LF  M++  I+PNQ TF   L AC+++ 
Sbjct: 280 QLFDEMPKRNVITWTTMMNGYLQCMQSEMALKLFNCMLVQGIQPNQVTFLGSLDACSNLA 339

Query: 332 SLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMI 391
           +L  G+QVH  + +T  + +T V S+L+++Y+KCG +   R VFD +  K+  + WN +I
Sbjct: 340 ALCEGQQVHQMICKTPSQFDTFVESTLMNLYAKCGEIRLARNVFDFSMEKD-LISWNGII 398

Query: 392 SALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGI 451
           +A   HG+  +A+ L+ +M  +  KP+  T   +L+AC+H+GLV EGL  FESM  D  I
Sbjct: 399 AAYAHHGFGIEAMHLYKNMQENGYKPNDATYVGLLSACSHAGLVDEGLKIFESMVKDNSI 458

Query: 452 IPNQEHHACLIELLAQAG---CSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRK 508
           +   EH+ CL++L ++AG    + +L++  +  P    S +W+AL G C  HGN  +G  
Sbjct: 459 VVRDEHYTCLVDLCSRAGRLEDAKRLISWFKIKPTS--STVWSALLGGCNSHGNESIGDL 516

Query: 509 VVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVH 568
               L++  P ++ T+ LL +IY++ GK +   ++R  +N R  KK+   SWIE+ NKVH
Sbjct: 517 AAKHLLEAEPDNAGTYTLLCNIYASAGKWKEAAEIRSEMNVRGLKKQPGCSWIEVANKVH 576

Query: 569 AFSVSDSLHPMRDVLYSVLE------QLAGQMGEDAPSLDAD 604
            F   D  H   D++  +L+      ++AG +  D   +D +
Sbjct: 577 VFVSRDKSHSESDLINDLLQDIHRIMRMAGTVPRDHMLIDVE 618



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 109/446 (24%), Positives = 181/446 (40%), Gaps = 88/446 (19%)

Query: 231 AKCGELSDARRLFDETDARDVLTWTTMV-------------------------------- 258
           A  G +SDARRLFD    RDV++WT MV                                
Sbjct: 52  AAAGRVSDARRLFDGMPDRDVVSWTAMVAAYARRGMLQEARVLFDRPDARRNVVTWTALL 111

Query: 259 SGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQH 318
           SGYA+   ++ A  LF  M E+N VSW T++  YT  G  + A  LF RM +     +  
Sbjct: 112 SGYARARRVDEAEALFEGMAERNVVSWNTMLEAYTAVGRVEDASALFNRMPV----RDAG 167

Query: 319 TFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLT 378
           +++  LC      SL+  +++   +   +  S T ++S L    ++ G ++D   +FD  
Sbjct: 168 SWNILLCGLVRSGSLERARKMFERMPVRDVMSWTTMISGL----ARNGSVDDAWVLFDAM 223

Query: 379 DNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSV----------------------- 415
             + N + WN MIS   ++   E+A+ LF  M    V                       
Sbjct: 224 PER-NVVSWNAMISGYARNHRIEEALDLFTKMPIRDVASWNIMITGFIQNKDLKSARQLF 282

Query: 416 ----KPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQ--AG 469
               K + IT   ++N        +  L  F  M    GI PNQ      ++  +   A 
Sbjct: 283 DEMPKRNVITWTTMMNGYLQCMQSEMALKLFNCMLVQ-GIQPNQVTFLGSLDACSNLAAL 341

Query: 470 CSDQLMNQLE-KMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLS 528
           C  Q ++Q+  K P + D+++ + L  +    G I + R V D  ++++  S   +G+++
Sbjct: 342 CEGQQVHQMICKTPSQFDTFVESTLMNLYAKCGEIRLARNVFDFSMEKDLIS--WNGIIA 399

Query: 529 SIYSALGKGRLVEKVRQLINERQFKKEQAI-----------SWIEIENKVHAFSVSDSLH 577
           + Y+  G G     + + + E  +K   A              ++   K+    V D+  
Sbjct: 400 A-YAHHGFGIEAMHLYKNMQENGYKPNDATYVGLLSACSHAGLVDEGLKIFESMVKDNSI 458

Query: 578 PMRDVLYSVLEQLAGQMG--EDAPSL 601
            +RD  Y+ L  L  + G  EDA  L
Sbjct: 459 VVRDEHYTCLVDLCSRAGRLEDAKRL 484



 Score = 65.9 bits (159), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 67/262 (25%), Positives = 124/262 (47%), Gaps = 27/262 (10%)

Query: 32  QLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPT---T 88
           Q   A+   + +  +GI+    T    L  C+   +L  G++VH  +     KTP+   T
Sbjct: 305 QSEMALKLFNCMLVQGIQPNQVTFLGSLDACSNLAALCEGQQVHQMIC----KTPSQFDT 360

Query: 89  FLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAER 148
           F+ + L+++Y KCG    AR VFD    K+L S+N +++ YA+ G    A +L+ NM E 
Sbjct: 361 FVESTLMNLYAKCGEIRLARNVFDFSMEKDLISWNGIIAAYAHHGFGIEAMHLYKNMQEN 420

Query: 149 DVVSWNTMIIGY----AKSGAVEEGLK-FYKVLRRFSISCNEFSFAGILTICVKLEELKL 203
                +   +G     + +G V+EGLK F  +++  SI   +  +  ++ +C +   L+ 
Sbjct: 421 GYKPNDATYVGLLSACSHAGLVDEGLKIFESMVKDNSIVVRDEHYTCLVDLCSRAGRLED 480

Query: 204 TRQVHGQVLVTGFLSNVVISSSIVDAYAKC--------GELSDARRLFDETDARDVLTWT 255
            ++     L++ F      S+        C        G+L+ A+ L  E +  +  T+T
Sbjct: 481 AKR-----LISWFKIKPTSSTVWSALLGGCNSHGNESIGDLA-AKHLL-EAEPDNAGTYT 533

Query: 256 TMVSGYAKLGDMESASKLFNEM 277
            + + YA  G  + A+++ +EM
Sbjct: 534 LLCNIYASAGKWKEAAEIRSEM 555


>gi|225428334|ref|XP_002279974.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
           mitochondrial [Vitis vinifera]
          Length = 623

 Score =  308 bits (788), Expect = 7e-81,   Method: Compositional matrix adjust.
 Identities = 174/559 (31%), Positives = 291/559 (52%), Gaps = 70/559 (12%)

Query: 20  LIQSFLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLK 79
           L+  F +   +  L  A+ ++D + + G+   A T + +++ C+   +++ GKRVH H+ 
Sbjct: 23  LVNEFANFCHQWDLHRAMRAMDAMERHGVFADAITYSELIKCCSARGAVQEGKRVHEHI- 81

Query: 80  LTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHAR 139
             +   P  F+ N L++M                               Y    +++ A 
Sbjct: 82  FCKGYEPKMFVVNTLLNM-------------------------------YVKFNLLEEAE 110

Query: 140 NLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLE 199
           +LFD M ER+VVSW TMI  Y+     ++ LK   ++ R  +  N F+++ +L  C  L 
Sbjct: 111 DLFDEMPERNVVSWTTMISAYSNK-LNDKALKCLILMFREGVRPNMFTYSSVLRACDGLP 169

Query: 200 ELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVS 259
            L   RQ+H  ++ TG  S+V + S+++D Y+K                     W+    
Sbjct: 170 NL---RQLHCGIIKTGLESDVFVRSALIDVYSK---------------------WS---- 201

Query: 260 GYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHT 319
                 D+++A  +F+EMP ++ V W ++I G+ +N  G +AL LF RM       +Q T
Sbjct: 202 ------DLDNALGVFDEMPTRDLVVWNSIIGGFAQNSDGNEALNLFKRMKRAGFLADQAT 255

Query: 320 FSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTD 379
            +S L AC  +  L+ G+QVH  +++  F  + I+ ++LIDMY KCG L D    F    
Sbjct: 256 LTSVLRACTGLALLELGRQVHVHVLK--FDQDLILNNALIDMYCKCGSLEDANSAFSRMV 313

Query: 380 NKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGL 439
            K+  + W+TM++ L Q+GY  QA+ LF  M  S  +P+ IT+  +L AC+H+GLV++G 
Sbjct: 314 EKD-VISWSTMVAGLAQNGYSRQALELFESMKESGSRPNYITVLGVLFACSHAGLVEKGW 372

Query: 440 TYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRI 499
            YF SM    G+ P +EH+ CLI+LL +AG  D+ +  + +M  E DS  W  L G CR+
Sbjct: 373 YYFRSMKKLFGVDPGREHYGCLIDLLGRAGRLDEAVKLIHEMECEPDSVTWRTLLGACRV 432

Query: 500 HGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAIS 559
           H N+D+      ++I+  P+ + T+ LLS+IY+   +   V +VR+ +  R  +K    S
Sbjct: 433 HRNVDLAIYAAKKIIELEPEDAGTYILLSNIYANTQRWEDVAEVRKTMTNRGIRKTPGCS 492

Query: 560 WIEIENKVHAFSVSDSLHP 578
           WIE++ ++H F + D+ HP
Sbjct: 493 WIEVDKQIHVFILGDTSHP 511


>gi|297606175|ref|NP_001058069.2| Os06g0613100 [Oryza sativa Japonica Group]
 gi|255677226|dbj|BAF19983.2| Os06g0613100 [Oryza sativa Japonica Group]
          Length = 590

 Score =  308 bits (788), Expect = 7e-81,   Method: Compositional matrix adjust.
 Identities = 169/523 (32%), Positives = 279/523 (53%), Gaps = 67/523 (12%)

Query: 59  LQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKN 118
           +  C E ++L  G++VH  + +T R  P  FL   L++MY +CG+               
Sbjct: 17  ITACIERRALWEGRQVHARM-ITARYRPAVFLGTRLVTMYVRCGA--------------- 60

Query: 119 LFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRR 178
                           +  ARN+ D M ER VVSW TMI GY+++    E L  +  + R
Sbjct: 61  ----------------LDDARNVLDRMPERSVVSWTTMISGYSQTERHVEALDLFIKMLR 104

Query: 179 FSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSD 238
                NE++ A +LT C   + +   +QVH  ++ T F S++ + SS++D YAK   + +
Sbjct: 105 AGCIPNEYTLATVLTSCSGPQSIYQGKQVHSLLVKTNFESHMFVGSSLLDMYAKSENIQE 164

Query: 239 ARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLG 298
           ARR                               +F+ +PE++ VS T +I+GY + GL 
Sbjct: 165 ARR-------------------------------VFDTLPERDVVSCTAIISGYAQKGLD 193

Query: 299 QKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSL 358
           ++AL+LF ++    ++ N  TF++ + A + + SL +GKQVH  ++R        + +SL
Sbjct: 194 EEALDLFRQLYSEGMQCNHVTFTTLVTALSGLASLDYGKQVHALILRKELPFFVALQNSL 253

Query: 359 IDMYSKCGCLNDGRQVFDLTDNKENSML-WNTMISALTQHGYDEQAIRLFHDMVRSSVKP 417
           IDMYSKCG L   R+VFD  +  E S++ WN M+    +HG   + I LF D+    VKP
Sbjct: 254 IDMYSKCGKLLYSRRVFD--NMLERSVVSWNAMLMGYGRHGLGHEVISLFKDL-HKEVKP 310

Query: 418 DKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQ 477
           D +TL  +L+ C+H GLV EGL  F+++  +   + +  H+ C+I+LL ++G  ++ +N 
Sbjct: 311 DSVTLLAVLSGCSHGGLVDEGLDIFDTVVKEQSALLHTGHYGCIIDLLGRSGRLEKALNL 370

Query: 478 LEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKG 537
           +E MP+E    +W +L G CR+H N+ +G  V  +L++  P+++  + +LS+IY+A G  
Sbjct: 371 IENMPFESTPSIWGSLLGACRVHANVHVGELVAQKLLEMEPENAGNYVILSNIYAAAGMW 430

Query: 538 RLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMR 580
           + V KVR+L+ E+   KE   SWI ++  +H F  S+  HP +
Sbjct: 431 KDVFKVRKLMLEKTVTKEPGQSWIILDKVIHTFHSSERFHPSK 473



 Score =  131 bits (330), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 100/404 (24%), Positives = 184/404 (45%), Gaps = 67/404 (16%)

Query: 188 FAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETD 247
           +   +T C++   L   RQVH +++   +   V + + +V  Y +CG L DAR + D   
Sbjct: 13  YEAAITACIERRALWEGRQVHARMITARYRPAVFLGTRLVTMYVRCGALDDARNVLDRMP 72

Query: 248 ARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTR 307
            R V++WTTM+SGY++               E++                  +AL+LF +
Sbjct: 73  ERSVVSWTTMISGYSQ--------------TERH-----------------VEALDLFIK 101

Query: 308 MMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGC 367
           M+     PN++T ++ L +C+   S+  GKQVH  L++TNF S+  V SSL+DMY+K   
Sbjct: 102 MLRAGCIPNEYTLATVLTSCSGPQSIYQGKQVHSLLVKTNFESHMFVGSSLLDMYAKSEN 161

Query: 368 LNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILN 427
           + + R+VFD T  + + +    +IS   Q G DE+A+ LF  +    ++ + +T   ++ 
Sbjct: 162 IQEARRVFD-TLPERDVVSCTAIISGYAQKGLDEEALDLFRQLYSEGMQCNHVTFTTLVT 220

Query: 428 ACT-----------HSGLVQEGLTYFESMTHDL--------------GIIPNQEHHA--- 459
           A +           H+ ++++ L +F ++ + L               +  N    +   
Sbjct: 221 ALSGLASLDYGKQVHALILRKELPFFVALQNSLIDMYSKCGKLLYSRRVFDNMLERSVVS 280

Query: 460 --CLIELLAQAGCSDQLMNQLEKMPYE--HDSYLWNALHGVCRIHGNIDMGRKVVDQLID 515
              ++    + G   ++++  + +  E   DS    A+   C   G +D G  + D ++ 
Sbjct: 281 WNAMLMGYGRHGLGHEVISLFKDLHKEVKPDSVTLLAVLSGCSHGGLVDEGLDIFDTVVK 340

Query: 516 QNPQSSATH-GLLSSIYSALGKGRLVEKVRQLINERQFKKEQAI 558
           +  QS+  H G    I   LG+   +EK   LI    F+   +I
Sbjct: 341 E--QSALLHTGHYGCIIDLLGRSGRLEKALNLIENMPFESTPSI 382



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 86/298 (28%), Positives = 146/298 (48%), Gaps = 40/298 (13%)

Query: 15  LPNNCLIQSFLSLISK-GQLSEAISSLDLLAQ--RGIRLPAE-TLAFILQQCAESKSLKL 70
           +P   ++ S+ ++IS   Q    + +LDL  +  R   +P E TLA +L  C+  +S+  
Sbjct: 71  MPERSVV-SWTTMISGYSQTERHVEALDLFIKMLRAGCIPNEYTLATVLTSCSGPQSIYQ 129

Query: 71  GKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYA 130
           GK+VH  L  T  ++   F+ + L+ MY K  +  +AR+VFD +P +++ S   ++SGYA
Sbjct: 130 GKQVHSLLVKTNFES-HMFVGSSLLDMYAKSENIQEARRVFDTLPERDVVSCTAIISGYA 188

Query: 131 NLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAG 190
             G+ + A +LF  +                      EG++           CN  +F  
Sbjct: 189 QKGLDEEALDLFRQL--------------------YSEGMQ-----------CNHVTFTT 217

Query: 191 ILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARD 250
           ++T    L  L   +QVH  +L       V + +S++D Y+KCG+L  +RR+FD    R 
Sbjct: 218 LVTALSGLASLDYGKQVHALILRKELPFFVALQNSLIDMYSKCGKLLYSRRVFDNMLERS 277

Query: 251 VLTWTTMVSGYAKLGDMESASKLFNEM-PEKNPVSWTTL--IAGYTRNGLGQKALELF 305
           V++W  M+ GY + G       LF ++  E  P S T L  ++G +  GL  + L++F
Sbjct: 278 VVSWNAMLMGYGRHGLGHEVISLFKDLHKEVKPDSVTLLAVLSGCSHGGLVDEGLDIF 335



 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 43/141 (30%), Positives = 71/141 (50%), Gaps = 6/141 (4%)

Query: 318 HTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDL 377
           H + + + AC    +L  G+QVH  +I   +R    + + L+ MY +CG L+D R V D 
Sbjct: 11  HEYEAAITACIERRALWEGRQVHARMITARYRPAVFLGTRLVTMYVRCGALDDARNVLDR 70

Query: 378 TDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQE 437
              + + + W TMIS  +Q     +A+ LF  M+R+   P++ TLA +L +C+    + +
Sbjct: 71  MPER-SVVSWTTMISGYSQTERHVEALDLFIKMLRAGCIPNEYTLATVLTSCSGPQSIYQ 129

Query: 438 GLTYFESMTHDLGIIPNQEHH 458
           G        H L +  N E H
Sbjct: 130 G-----KQVHSLLVKTNFESH 145


>gi|328774759|gb|AEB39779.1| pentatricopeptide repeat protein 98 [Funaria hygrometrica]
          Length = 980

 Score =  307 bits (787), Expect = 8e-81,   Method: Compositional matrix adjust.
 Identities = 190/655 (29%), Positives = 315/655 (48%), Gaps = 109/655 (16%)

Query: 14  NLPNNCLIQSFLSLIS----KGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLK 69
           NLP   LI ++ S+I+      Q  +A +   ++ + G++        +L+ C   ++L+
Sbjct: 265 NLPRRDLI-TWTSMITGLARHRQFKQACNLFQVMEEEGVQPDKVAFVSLLKACNHPEALE 323

Query: 70  LGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGY 129
            GKRVH  +K     T   ++   L+SMY KC                            
Sbjct: 324 QGKRVHARMKEVGLDT-EIYVGTALLSMYTKC---------------------------- 354

Query: 130 ANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFA 189
              G M+ A  +F+ +  R+VVSW  MI G+A+ G +EE   F+  +    I  N  +F 
Sbjct: 355 ---GSMEDALEVFNLVKGRNVVSWTAMIAGFAQHGRMEEAFLFFNKMIESGIEPNRVTFM 411

Query: 190 GILTICVKLEELKLTRQVHGQVLVTGFLS------------------------------- 218
            IL  C +   LK  RQ+H +++  G+++                               
Sbjct: 412 SILGACSRPSALKQGRQIHDRIIKAGYITDDRVRTALLSMYAKCGSLMDARNVFERISKQ 471

Query: 219 NVVISSSIVDAYAKCGELSDARRLFD----------------------ETDARDVLTWT- 255
           NVV  ++++ AY +  +  +A   F                         DA ++  W  
Sbjct: 472 NVVAWNAMITAYVQHEKYDNAVATFQALLKEGIKPDSSTFTSILNVCKSPDALELGKWVQ 531

Query: 256 ----------------TMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQ 299
                            +VS +   GD+ SA  LFN+MPE++ VSW T+IAG+ ++G  Q
Sbjct: 532 SLIIRAGFESDLHIRNALVSMFVNCGDLMSAMNLFNDMPERDLVSWNTIIAGFVQHGENQ 591

Query: 300 KALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLI 359
            A + F  M    ++P+Q TF+  L ACAS  +L  G+++H  +       + +V + LI
Sbjct: 592 FAFDYFKMMQESGVKPDQITFTGLLNACASPEALTEGRRLHALITEAALDCDVVVGTGLI 651

Query: 360 DMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDK 419
            MY+KCG ++D   VF     K+N   W +MI+   QHG  ++A+ LF  M +  VKPD 
Sbjct: 652 SMYTKCGSIDDAHLVFH-NLPKKNVYSWTSMITGYAQHGRGKEALELFCQMQQEGVKPDW 710

Query: 420 ITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLE 479
           IT    L+AC H+GL++EGL +FESM  D  I P  EH+ C+++L  +AG   + +  + 
Sbjct: 711 ITFVGALSACAHAGLIKEGLHHFESMK-DFNIEPRMEHYGCMVDLFGRAGLLHEAVEFIN 769

Query: 480 KMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRL 539
           KM  + DS LW AL G C++H ++++  KV  + ++ +P     + +LS+IY+A G  + 
Sbjct: 770 KMQVKPDSRLWGALLGACQVHLDVELAEKVAQKKLELDPNDDGVYVILSNIYAAAGMWKE 829

Query: 540 VEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQM 594
           V K+R+++ +R   K+   SWIE++ +VH F   D  HP  + +++ L +L  +M
Sbjct: 830 VTKMRKVMLDRGVVKKPGQSWIEVDGRVHIFCSDDKTHPQIEEIHAELGRLHMEM 884



 Score =  202 bits (513), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 155/611 (25%), Positives = 273/611 (44%), Gaps = 113/611 (18%)

Query: 14  NLPNNCLIQSFLSLISK-GQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGK 72
           ++ N     +FL+ +SK GQLSEA+  L  +    I++  +T + +LQ C + K+L  G+
Sbjct: 65  DIKNTQRANAFLNRLSKAGQLSEAMLVLLSVDSPHIQIHRQTYSSLLQLCIKHKNLGDGE 124

Query: 73  RVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANL 132
           R+H H+K ++ + P  F+ N LISM                               YA  
Sbjct: 125 RIHNHIKFSKIQ-PDIFMWNMLISM-------------------------------YAKC 152

Query: 133 GMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGIL 192
           G    A+ +FD M ++DV SWN ++ GY +    EE  + ++ + +  +  ++++F  +L
Sbjct: 153 GNTNSAKQIFDEMPDKDVYSWNLLLGGYVQHRRYEEAFRLHEQMVQDGVKPDKYTFVYML 212

Query: 193 TICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVL 252
             C   + +    ++   +L  G+ +++ + +++++ + KCG + DA ++F+    RD++
Sbjct: 213 NACADAKNVDKGGELFSLILNAGWDTDLFVGTALINMHIKCGGVDDALKVFNNLPRRDLI 272

Query: 253 TWTTMVSGYAKLGDMESASKLFNEMPEK----NPVSW----------------------- 285
           TWT+M++G A+    + A  LF  M E+    + V++                       
Sbjct: 273 TWTSMITGLARHRQFKQACNLFQVMEEEGVQPDKVAFVSLLKACNHPEALEQGKRVHARM 332

Query: 286 ------------TTLIAGYTRNGLGQKALEL----------------------------- 304
                       T L++ YT+ G  + ALE+                             
Sbjct: 333 KEVGLDTEIYVGTALLSMYTKCGSMEDALEVFNLVKGRNVVSWTAMIAGFAQHGRMEEAF 392

Query: 305 --FTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMY 362
             F +M+   I PN+ TF S L AC+   +LK G+Q+H  +I+  + ++  V ++L+ MY
Sbjct: 393 LFFNKMIESGIEPNRVTFMSILGACSRPSALKQGRQIHDRIIKAGYITDDRVRTALLSMY 452

Query: 363 SKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITL 422
           +KCG L D R VF+   +K+N + WN MI+A  QH   + A+  F  +++  +KPD  T 
Sbjct: 453 AKCGSLMDARNVFERI-SKQNVVAWNAMITAYVQHEKYDNAVATFQALLKEGIKPDSSTF 511

Query: 423 AVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMP 482
             ILN C     ++ G  + +S+    G   +      L+ +    G     MN    MP
Sbjct: 512 TSILNVCKSPDALELG-KWVQSLIIRAGFESDLHIRNALVSMFVNCGDLMSAMNLFNDMP 570

Query: 483 YEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQN--PQSSATHGLLSSIYS--ALGKGR 538
            E D   WN +      HG           + +    P      GLL++  S  AL +GR
Sbjct: 571 -ERDLVSWNTIIAGFVQHGENQFAFDYFKMMQESGVKPDQITFTGLLNACASPEALTEGR 629

Query: 539 LVEKVRQLINE 549
              ++  LI E
Sbjct: 630 ---RLHALITE 637


>gi|449517557|ref|XP_004165812.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
           mitochondrial-like [Cucumis sativus]
          Length = 667

 Score =  307 bits (787), Expect = 9e-81,   Method: Compositional matrix adjust.
 Identities = 167/506 (33%), Positives = 273/506 (53%), Gaps = 14/506 (2%)

Query: 92  NHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANL-GMMKHARNLFDNMAERDV 150
           N  I+ + +      AR VF+K+ V+   ++N MLSGY  + G +K A  LFD + E D 
Sbjct: 77  NKTIASFVRACDLESARNVFEKMSVRTTVTWNTMLSGYTKVAGKVKEAHELFDKIPEPDS 136

Query: 151 VSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQ 210
           VS+N M++ Y +S  VE  L F+          N+     I +    +       Q+   
Sbjct: 137 VSYNIMLVCYLRSYGVEAALAFF----------NKMPVKDIASWNTLISGFAQNGQMQKA 186

Query: 211 VLVTGFLS--NVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDME 268
             +   +   N V  S+++  Y + G+L  A  L+     + V+  T M++GY K G +E
Sbjct: 187 FDLFSVMPEKNGVSWSAMISGYVEHGDLEAAEELYKNVGMKSVVVETAMLTGYMKFGKVE 246

Query: 269 SASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACA 328
            A ++F  M  KN V+W ++IAGY  N   +  L++F  M+  R+RPN  + SS L  C+
Sbjct: 247 LAERIFQRMAVKNLVTWNSMIAGYVENCRAEDGLKVFKTMIESRVRPNPLSLSSVLLGCS 306

Query: 329 SIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWN 388
           ++ +L  G+Q+H  + ++    +T   +SLI MY KCG L+   ++F L   +++ + WN
Sbjct: 307 NLSALPLGRQMHQLVSKSPLSKDTTACTSLISMYCKCGDLDSAWKLF-LEMPRKDVISWN 365

Query: 389 TMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHD 448
            MIS   QHG   +A+ LF  M   ++KPD IT   ++ AC H+G V  G+ YF+SM  +
Sbjct: 366 AMISGYAQHGAGRKALHLFDKMRNGTMKPDWITFVAVILACNHAGFVDLGVQYFKSMKKE 425

Query: 449 LGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRK 508
            GI     H+ C+I+LL +AG  D+ ++ +++MP++  + ++  L G CRIH N+D+   
Sbjct: 426 FGIEAKPVHYTCVIDLLGRAGRLDEAVSLIKEMPFKPHAAIYGTLLGACRIHKNLDLAEF 485

Query: 509 VVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVH 568
               L++ +P S+  +  L++IY+A  K   V KVR+++ E    K    SWIEI++  H
Sbjct: 486 AARNLLNLDPTSATGYVQLANIYAATNKWDQVAKVRKMMKEHNVVKIPGYSWIEIKSVTH 545

Query: 569 AFSVSDSLHPMRDVLYSVLEQLAGQM 594
            F  SD LHP    ++  L +L G+M
Sbjct: 546 EFRSSDRLHPELTSIHKKLNELDGKM 571



 Score =  128 bits (322), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 93/367 (25%), Positives = 169/367 (46%), Gaps = 48/367 (13%)

Query: 71  GKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYA 130
           GK    H    +   P +   N ++  Y +      A   F+K+PVK++ S+N ++SG+A
Sbjct: 119 GKVKEAHELFDKIPEPDSVSYNIMLVCYLRSYGVEAALAFFNKMPVKDIASWNTLISGFA 178

Query: 131 NLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAG 190
             G M+ A +LF  M E++ VSW+ MI GY + G +E   + YK +   S+         
Sbjct: 179 QNGQMQKAFDLFSVMPEKNGVSWSAMISGYVEHGDLEAAEELYKNVGMKSVVVE----TA 234

Query: 191 ILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFD---ETD 247
           +LT  +K  +++L  ++  ++ V     N+V  +S++  Y +     D  ++F    E+ 
Sbjct: 235 MLTGYMKFGKVELAERIFQRMAV----KNLVTWNSMIAGYVENCRAEDGLKVFKTMIESR 290

Query: 248 AR------------------------------------DVLTWTTMVSGYAKLGDMESAS 271
            R                                    D    T+++S Y K GD++SA 
Sbjct: 291 VRPNPLSLSSVLLGCSNLSALPLGRQMHQLVSKSPLSKDTTACTSLISMYCKCGDLDSAW 350

Query: 272 KLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIV 331
           KLF EMP K+ +SW  +I+GY ++G G+KAL LF +M    ++P+  TF + + AC    
Sbjct: 351 KLFLEMPRKDVISWNAMISGYAQHGAGRKALHLFDKMRNGTMKPDWITFVAVILACNHAG 410

Query: 332 SLKHGKQVHGFLIRT-NFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTM 390
            +  G Q    + +     +  +  + +ID+  + G L++   +      K ++ ++ T+
Sbjct: 411 FVDLGVQYFKSMKKEFGIEAKPVHYTCVIDLLGRAGRLDEAVSLIKEMPFKPHAAIYGTL 470

Query: 391 ISALTQH 397
           + A   H
Sbjct: 471 LGACRIH 477



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 83/334 (24%), Positives = 151/334 (45%), Gaps = 53/334 (15%)

Query: 218 SNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLG------------ 265
           S+VV  +  + ++ +  +L  AR +F++   R  +TW TM+SGY K+             
Sbjct: 71  SDVVSLNKTIASFVRACDLESARNVFEKMSVRTTVTWNTMLSGYTKVAGKVKEAHELFDK 130

Query: 266 --------------------DMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELF 305
                                +E+A   FN+MP K+  SW TLI+G+ +NG  QKA +LF
Sbjct: 131 IPEPDSVSYNIMLVCYLRSYGVEAALAFFNKMPVKDIASWNTLISGFAQNGQMQKAFDLF 190

Query: 306 TRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKC 365
           + M       N  ++S+ +        L+  ++    L +     + +V ++++  Y K 
Sbjct: 191 SVMP----EKNGVSWSAMISGYVEHGDLEAAEE----LYKNVGMKSVVVETAMLTGYMKF 242

Query: 366 GCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVI 425
           G +    ++F     K N + WN+MI+   ++   E  +++F  M+ S V+P+ ++L+ +
Sbjct: 243 GKVELAERIFQRMAVK-NLVTWNSMIAGYVENCRAEDGLKVFKTMIESRVRPNPLSLSSV 301

Query: 426 LNACTHSGLVQEGLTYFESMTHDLGIIP-NQEHHAC--LIELLAQAGCSDQLMNQLEKMP 482
           L  C++   +  G      M   +   P +++  AC  LI +  + G  D       +MP
Sbjct: 302 LLGCSNLSALPLG----RQMHQLVSKSPLSKDTTACTSLISMYCKCGDLDSAWKLFLEMP 357

Query: 483 YEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQ 516
            + D   WNA+      HG    GRK +  L D+
Sbjct: 358 RK-DVISWNAMISGYAQHG---AGRKAL-HLFDK 386


>gi|449467189|ref|XP_004151307.1| PREDICTED: pentatricopeptide repeat-containing protein At1g53600,
           mitochondrial-like [Cucumis sativus]
          Length = 711

 Score =  307 bits (787), Expect = 9e-81,   Method: Compositional matrix adjust.
 Identities = 167/545 (30%), Positives = 287/545 (52%), Gaps = 36/545 (6%)

Query: 82  QRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNL 141
            R+ P    SN LI+ Y K G   DA ++FD +  K++ S+++M+SG   +G +  AR L
Sbjct: 163 HREKPVIVSSNVLINGYSKVGRVEDAVRIFDGMAEKDVVSWSSMISGLCRVGKIVEARKL 222

Query: 142 FDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEEL 201
           FD M +R+VV+W  MI GY K   +++G   +  +RR  +  N  +   +L  C   +  
Sbjct: 223 FDKMPDRNVVTWTLMIDGYMKMNFLKDGFILFLNMRREGVEVNATTLTVLLEACGSFDRY 282

Query: 202 KLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGY 261
               Q+HG VL  GF  +  +++SI+  Y++C  +  A + FD    +D++TW ++++GY
Sbjct: 283 GEGIQIHGLVLSLGFDVDAYLANSIITMYSRCYSIDAAAKQFDLMVKKDIVTWNSLITGY 342

Query: 262 AKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNG-----LG------------------ 298
            + G++E A  LF  MP+K+ VSWTTLI G+   G     +G                  
Sbjct: 343 VQSGNLEKAVFLFENMPQKDVVSWTTLICGFASEGRIDEFIGLFQMMPEKDAIAWTAVIS 402

Query: 299 --------QKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRS 350
                   + A   F +M+   I+PN  T S  L A AS+  L  G Q+H  + + +  +
Sbjct: 403 GLVSIEEYEIAFHWFIKMLQSVIKPNAFTLSCVLSAGASMAILNQGLQIHAIVTKMSMEN 462

Query: 351 NTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDM 410
           +  + +SL+ MYSKCG ++D  ++F       N + +NT+I+ L Q+G  ++A+ +F  M
Sbjct: 463 DLSIQNSLVSMYSKCGNVDDALKMFYYI-KVPNVVAYNTIITGLAQNGLGKEALEIFTKM 521

Query: 411 VRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGC 470
               + P+ IT   +L+AC H GLV+EG  YF+ M     I P  +H+AC+++LL +AG 
Sbjct: 522 QDDYLVPNHITFLGVLSACVHVGLVEEGRRYFDLMRSLYDIQPEPDHYACMVDLLCRAGM 581

Query: 471 SDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSI 530
            D+ ++ +  MP++    +W A+ G    H  +D+       L +  P S+  + +LS++
Sbjct: 582 FDEAVSLVSSMPFDPHQGVWGAVLGASWTHLRLDVAELAAQNLFELEPNSATPYVILSNL 641

Query: 531 YSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVS----DSLHPMRDVLYSV 586
           +S  G  R  E +R +   R  KK    SWI ++++VH F        ++  M +++Y++
Sbjct: 642 HSISGDERKHELIRLMKKSRGLKKSPGCSWIILKDEVHLFHAGHQSIKNIKEMTEIIYAL 701

Query: 587 LEQLA 591
            E++ 
Sbjct: 702 AEEVG 706



 Score =  179 bits (455), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 120/468 (25%), Positives = 223/468 (47%), Gaps = 48/468 (10%)

Query: 70  LGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGY 129
           L KR +      Q+ +      N  I+   + G   +A  +F+++P KN  S+  +L+ Y
Sbjct: 29  LSKRGNFDSATRQKSSKFLVYCNSQITKLGRNGCIKEAESIFNRMPNKNTVSWTALLTAY 88

Query: 130 ANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFA 189
           A    +  AR +F+ + + +V S+N MI  Y +   V+E  + +  + +     N  S+A
Sbjct: 89  AENSEINKAREVFNKIPDPNVASYNAMITAYHRRNMVDEAFELFSSMPQ----RNSVSYA 144

Query: 190 GILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDAR 249
            ++T  V      +  ++H +  V      +V S+ +++ Y+K G + DA R+FD    +
Sbjct: 145 TMITGFVHAGMFDMAEKLHREKPV------IVSSNVLINGYSKVGRVEDAVRIFDGMAEK 198

Query: 250 DVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMM 309
           DV++W++M+SG  ++G +  A KLF++MP++N V+WT +I GY +    +    LF  M 
Sbjct: 199 DVVSWSSMISGLCRVGKIVEARKLFDKMPDRNVVTWTLMIDGYMKMNFLKDGFILFLNMR 258

Query: 310 ILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLN 369
              +  N  T +  L AC S      G Q+HG ++   F  +  + +S+I MYS+C  ++
Sbjct: 259 REGVEVNATTLTVLLEACGSFDRYGEGIQIHGLVLSLGFDVDAYLANSIITMYSRCYSID 318

Query: 370 DGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNAC 429
              + FDL   K++ + WN++I+   Q G  E+A+ LF +M +     D ++   ++   
Sbjct: 319 AAAKQFDLM-VKKDIVTWNSLITGYVQSGNLEKAVFLFENMPQK----DVVSWTTLICGF 373

Query: 430 THSGLVQEGLTYFESMTHD---------LGIIPNQEH-----------------HACLIE 463
              G + E +  F+ M             G++  +E+                 +A  + 
Sbjct: 374 ASEGRIDEFIGLFQMMPEKDAIAWTAVISGLVSIEEYEIAFHWFIKMLQSVIKPNAFTLS 433

Query: 464 LLAQAGCSDQLMNQ-------LEKMPYEHDSYLWNALHGVCRIHGNID 504
            +  AG S  ++NQ       + KM  E+D  + N+L  +    GN+D
Sbjct: 434 CVLSAGASMAILNQGLQIHAIVTKMSMENDLSIQNSLVSMYSKCGNVD 481



 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 68/305 (22%), Positives = 147/305 (48%), Gaps = 27/305 (8%)

Query: 220 VVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPE 279
           +V  +S +    + G + +A  +F+    ++ ++WT +++ YA+  ++  A ++FN++P+
Sbjct: 47  LVYCNSQITKLGRNGCIKEAESIFNRMPNKNTVSWTALLTAYAENSEINKAREVFNKIPD 106

Query: 280 KNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQV 339
            N  S+  +I  Y R  +  +A ELF+ M     + N  ++++ +            +++
Sbjct: 107 PNVASYNAMITAYHRRNMVDEAFELFSSMP----QRNSVSYATMITGFVHAGMFDMAEKL 162

Query: 340 HGFLIRTNFRSNTIVMSS--LIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQH 397
           H        R   +++SS  LI+ YSK G + D  ++FD    K+  + W++MIS L + 
Sbjct: 163 H--------REKPVIVSSNVLINGYSKVGRVEDAVRIFDGMAEKD-VVSWSSMISGLCRV 213

Query: 398 GYDEQAIRLFHDMVRSSVKPDK--ITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQ 455
           G   +A +LF  M      PD+  +T  ++++       +++G   F +M  + G+  N 
Sbjct: 214 GKIVEARKLFDKM------PDRNVVTWTLMIDGYMKMNFLKDGFILFLNMRRE-GVEVNA 266

Query: 456 EHHACLIEL---LAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQ 512
                L+E      + G   Q+   +  + ++ D+YL N++  +     +ID   K  D 
Sbjct: 267 TTLTVLLEACGSFDRYGEGIQIHGLVLSLGFDVDAYLANSIITMYSRCYSIDAAAKQFDL 326

Query: 513 LIDQN 517
           ++ ++
Sbjct: 327 MVKKD 331


>gi|413938666|gb|AFW73217.1| hypothetical protein ZEAMMB73_724608 [Zea mays]
          Length = 610

 Score =  307 bits (787), Expect = 9e-81,   Method: Compositional matrix adjust.
 Identities = 174/515 (33%), Positives = 269/515 (52%), Gaps = 47/515 (9%)

Query: 81  TQRKTPTTFLSNHLISMYFKCGSDV---DARKVFDKIPVKNLFSYNNMLSGYANLGMMKH 137
           TQ KT TT+  N L++ Y K    +   DAR++FD IP  +  SYN +LS +   G +  
Sbjct: 38  TQLKTTTTY--NCLLAGYAKASGLIRLADARRLFDSIPHPDTVSYNTLLSCHFACGDIDG 95

Query: 138 ARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVK 197
           AR +F  M  +DV SWNTM+ G +K+GA EE    ++++                     
Sbjct: 96  ARRVFSTMPVKDVTSWNTMVSGLSKNGASEEAAAMFRIMP-------------------- 135

Query: 198 LEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLF-DETDARDVLTWTT 256
                              + N V  +++V A A  G++  A  LF +  +  D + WT 
Sbjct: 136 -------------------VRNAVSWNAMVAALACSGDMGAAEDLFRNAPEKTDAILWTA 176

Query: 257 MVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRI-RP 315
           MVSGY   G+++ A + F  MP +N VSW  ++AGY +N     AL +F  M+   I +P
Sbjct: 177 MVSGYMDTGNVQKAMEFFGAMPVRNLVSWNAVVAGYVKNSRADDALRVFKTMVEDSIVQP 236

Query: 316 NQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVF 375
           N  T SS L  C+++ +L  G+QVH + ++     N  V +SL+ MY KCG LND  +VF
Sbjct: 237 NASTLSSVLLGCSNLSALGFGRQVHQWCMKLPLSRNVTVGTSLLSMYCKCGDLNDACKVF 296

Query: 376 DLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLV 435
           D    K+  + WN MIS   QHG   QAI+LF  M    V PD ITL  +L AC H+GL 
Sbjct: 297 DEMSTKD-IVAWNAMISGYAQHGGGMQAIKLFEKMKDEGVVPDWITLLAVLTACIHTGLC 355

Query: 436 QEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHG 495
             G+  FE+M     I P  +H++C+++LL +AG  ++ +N +  MP+E     +  L  
Sbjct: 356 DFGIQCFETMQEAYKIEPQIDHYSCMVDLLCRAGLLERAVNMIHSMPFEPHPSAYGTLLT 415

Query: 496 VCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKE 555
            CR++ N++       +LI+Q+PQ++  +  L++IY+   K   V +VR+ + +    K 
Sbjct: 416 ACRVYKNLEFAEFAARKLIEQDPQNAGAYVQLANIYAVANKWADVSRVRRWMKDNAVVKT 475

Query: 556 QAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQL 590
              SW+EI+   H F  +D LHP   +++  L++L
Sbjct: 476 PGYSWMEIKGVRHEFRSNDRLHPQLGLIHDKLDRL 510


>gi|449458017|ref|XP_004146744.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g49142-like [Cucumis sativus]
          Length = 678

 Score =  307 bits (787), Expect = 9e-81,   Method: Compositional matrix adjust.
 Identities = 161/509 (31%), Positives = 268/509 (52%), Gaps = 38/509 (7%)

Query: 125 MLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCN 184
           ++  Y+  G    AR +FD   E++VV +N MI  Y  +    E L  ++V+   + + +
Sbjct: 77  LMRAYSAQGETSVARYIFDRSLEKNVVFFNVMIRSYVNNNLYVEALSIFQVMLSCAFNPD 136

Query: 185 EFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFD 244
            ++F  +L  C  L+ L++  QVH  ++  G  +N+ I +++V  Y KCG L +AR++ D
Sbjct: 137 HYTFPCVLKACSGLDNLRVGLQVHDAIVKVGLDTNLFIGNALVAMYGKCGCLREARKVLD 196

Query: 245 ETDARDVLTWTTMVSGYAKLGDMESA---------------------------------- 270
           +   RDV++W +MV+GYA+ G  + A                                  
Sbjct: 197 QMPYRDVVSWNSMVAGYAQSGQFDDALEICKEMDSLNLNHDAGTMASLSPVVCYTSLENV 256

Query: 271 ---SKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCAC 327
                +F  M +KN +SW  +IA Y  N +  +A+ LF +M    ++P+  T +S L AC
Sbjct: 257 QYIHNMFERMTKKNLISWNVMIAIYVNNSMPNEAVSLFLQMEECGMKPDAVTIASLLPAC 316

Query: 328 ASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLW 387
             + +L  G+++H ++ + N R N ++ ++L+DMY+KCGCL + R VFD    ++  + W
Sbjct: 317 GDLSALFLGRRLHKYIEKGNLRPNLLLENALLDMYAKCGCLEEARDVFDKMRLRD-VVSW 375

Query: 388 NTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTH 447
            +M+SA  + G    A+ LF  M+ S   PD I    +L+AC+H+GL+ +G  YF  MT 
Sbjct: 376 TSMMSAYGRSGQGYDAVALFAKMLDSGQNPDSIAFVSVLSACSHTGLLDQGRHYFRMMTE 435

Query: 448 DLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGR 507
             GI+P  EH AC+++L  +AG  ++  + +++MP E +  +W AL   CR+H  +D+G 
Sbjct: 436 QYGIVPRIEHFACMVDLFGRAGEVEEAYSFIKQMPMEPNERVWGALLSACRVHSKMDIGL 495

Query: 508 KVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKV 567
              D L    P+ S  + LLS+IY+  G  + V  VR  + +   KK   IS +E+  +V
Sbjct: 496 VAADLLFQLAPKQSGYYVLLSNIYAKAGMWKDVMNVRYAMKKIGIKKVPGISNVELNGQV 555

Query: 568 HAFSVSDSLHPMRDVLYSVLEQLAGQMGE 596
           H F   D  HP    +Y  L+ L G+M E
Sbjct: 556 HTFLAGDQYHPQAKNIYGELDVLVGKMKE 584



 Score =  107 bits (266), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 100/432 (23%), Positives = 186/432 (43%), Gaps = 81/432 (18%)

Query: 8   RGINRKNLPNNCLIQSFLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKS 67
           R + +  +  N +I+S+   ++     EA+S   ++          T   +L+ C+   +
Sbjct: 96  RSLEKNVVFFNVMIRSY---VNNNLYVEALSIFQVMLSCAFNPDHYTFPCVLKACSGLDN 152

Query: 68  LKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLS 127
           L++G +VH  +      T   F+ N L++MY KC                          
Sbjct: 153 LRVGLQVHDAIVKVGLDT-NLFIGNALVAMYGKC-------------------------- 185

Query: 128 GYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFS 187
                G ++ AR + D M  RDVVSWN+M+ GYA+SG  ++ L+  K +   +++ +  +
Sbjct: 186 -----GCLREARKVLDQMPYRDVVSWNSMVAGYAQSGQFDDALEICKEMDSLNLNHDAGT 240

Query: 188 FAGI-LTIC-VKLEELKLTRQVHGQVLVTGFLS-NVVI---------------------- 222
            A +   +C   LE ++    +  ++     +S NV+I                      
Sbjct: 241 MASLSPVVCYTSLENVQYIHNMFERMTKKNLISWNVMIAIYVNNSMPNEAVSLFLQMEEC 300

Query: 223 -----SSSIVDAYAKCGELSD---ARRL---FDETDAR-DVLTWTTMVSGYAKLGDMESA 270
                + +I      CG+LS     RRL    ++ + R ++L    ++  YAK G +E A
Sbjct: 301 GMKPDAVTIASLLPACGDLSALFLGRRLHKYIEKGNLRPNLLLENALLDMYAKCGCLEEA 360

Query: 271 SKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASI 330
             +F++M  ++ VSWT++++ Y R+G G  A+ LF +M+     P+   F S L AC+  
Sbjct: 361 RDVFDKMRLRDVVSWTSMMSAYGRSGQGYDAVALFAKMLDSGQNPDSIAFVSVLSACSHT 420

Query: 331 VSLKHGKQVHGFLIRTNFRSNTIV-----MSSLIDMYSKCGCLNDGRQVFDLTDNKENSM 385
             L  G+  H F + T      IV      + ++D++ + G + +          + N  
Sbjct: 421 GLLDQGR--HYFRMMT--EQYGIVPRIEHFACMVDLFGRAGEVEEAYSFIKQMPMEPNER 476

Query: 386 LWNTMISALTQH 397
           +W  ++SA   H
Sbjct: 477 VWGALLSACRVH 488


>gi|147801369|emb|CAN74731.1| hypothetical protein VITISV_037837 [Vitis vinifera]
          Length = 719

 Score =  307 bits (787), Expect = 9e-81,   Method: Compositional matrix adjust.
 Identities = 161/475 (33%), Positives = 262/475 (55%), Gaps = 34/475 (7%)

Query: 123 NNMLSGYANLGMMKHARNLFDNMAE-RDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSI 181
           N +L+ Y   G +  A+ +F  M   RD VSWN+MI+ Y +     + L  ++ + R  +
Sbjct: 177 NALLTYYGKNGDLDDAKRVFYGMGGIRDEVSWNSMIVAYGQHQEGSKALGLFQEMVRRGL 236

Query: 182 SCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARR 241
           + + F+ A +LT    LE+L    Q HGQ++ TGF  N  + S ++D Y+KCG       
Sbjct: 237 NVDMFTLASVLTAFTCLEDLSGGLQFHGQLIKTGFHQNSHVGSGLIDLYSKCG------- 289

Query: 242 LFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNG-LGQK 300
                                  G M    K+F E+ E + V W T+++GY++N    + 
Sbjct: 290 -----------------------GGMSDCRKVFEEITEPDLVLWNTMVSGYSQNEEFLED 326

Query: 301 ALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTI-VMSSLI 359
           ALE F +M  +  RPN  +F   + AC+++ S   GKQ+H   ++++  SN I V ++LI
Sbjct: 327 ALECFRQMQGIGYRPNDCSFVCVISACSNLSSPSQGKQIHSLALKSDIPSNRISVDNALI 386

Query: 360 DMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDK 419
            MYSKCG L D R++FD    + N++  N+MI+   QHG + +++ LF  M+   + P  
Sbjct: 387 AMYSKCGNLQDARRLFDRM-AEHNTVSLNSMIAGYAQHGIEMESLHLFQWMLERQIAPTS 445

Query: 420 ITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLE 479
           IT   +L+AC H+G V+EG  YF  M     I P  EH++C+I+LL +AG   +  N + 
Sbjct: 446 ITFISVLSACAHTGRVEEGWNYFNMMKEKFNIEPEAEHYSCMIDLLGRAGKLSEAENLIA 505

Query: 480 KMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRL 539
           +MP+   S  W +L G CR HGNI++  K  +Q++   P ++A + +LS++Y++ G+   
Sbjct: 506 RMPFNPGSIGWASLLGACRTHGNIELAVKAANQVLQLEPSNAAPYVVLSNMYASAGRWEE 565

Query: 540 VEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQM 594
           V  VR+ + +R  KK+   SWIE++ ++H F   DS HPM   +Y  LE+++G+M
Sbjct: 566 VATVRKFMRDRGVKKKPGCSWIEVKKRIHVFVAEDSSHPMIKEIYEFLEEMSGKM 620



 Score =  188 bits (478), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 116/377 (30%), Positives = 190/377 (50%), Gaps = 38/377 (10%)

Query: 58  ILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVK 117
           +L+ C   + L  GK +H  L +     P+T+ SNH I +Y KCG    ARK F  I   
Sbjct: 14  LLKTCIAERDLSTGKSLH-SLYIKSFIPPSTYFSNHFILLYSKCGRLAWARKAFQDISDP 72

Query: 118 NLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLR 177
           N+FS+N +++ YA       A  LFD + E D+VS+NT+I  YA  G     L  +  +R
Sbjct: 73  NVFSFNAIIAAYAKESRPLIAHQLFDQIPEPDLVSYNTLISAYADCGETAPALGLFSGMR 132

Query: 178 RFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELS 237
              +  + F+ + ++T C   +++ L  Q+H   + +GF S V ++++++  Y K G+L 
Sbjct: 133 EMGLDMDXFTLSAVITACC--DDVGLIGQLHSVAVSSGFDSYVSVNNALLTYYGKNGDLD 190

Query: 238 DARRLFDETDA-RDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNG 296
           DA+R+F      RD ++W +M+  Y +  +                              
Sbjct: 191 DAKRVFYGMGGIRDEVSWNSMIVAYGQHQE------------------------------ 220

Query: 297 LGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMS 356
            G KAL LF  M+   +  +  T +S L A   +  L  G Q HG LI+T F  N+ V S
Sbjct: 221 -GSKALGLFQEMVRRGLNVDMFTLASVLTAFTCLEDLSGGLQFHGQLIKTGFHQNSHVGS 279

Query: 357 SLIDMYSKC-GCLNDGRQVFDLTDNKENSMLWNTMISALTQH-GYDEQAIRLFHDMVRSS 414
            LID+YSKC G ++D R+VF+    + + +LWNTM+S  +Q+  + E A+  F  M    
Sbjct: 280 GLIDLYSKCGGGMSDCRKVFEEI-TEPDLVLWNTMVSGYSQNEEFLEDALECFRQMQGIG 338

Query: 415 VKPDKITLAVILNACTH 431
            +P+  +   +++AC++
Sbjct: 339 YRPNDCSFVCVISACSN 355



 Score =  128 bits (322), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 87/306 (28%), Positives = 148/306 (48%), Gaps = 3/306 (0%)

Query: 188 FAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETD 247
           F  +L  C+   +L   + +H   + +    +   S+  +  Y+KCG L+ AR+ F +  
Sbjct: 11  FRHLLKTCIAERDLSTGKSLHSLYIKSFIPPSTYFSNHFILLYSKCGRLAWARKAFQDIS 70

Query: 248 ARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTR 307
             +V ++  +++ YAK      A +LF+++PE + VS+ TLI+ Y   G    AL LF+ 
Sbjct: 71  DPNVFSFNAIIAAYAKESRPLIAHQLFDQIPEPDLVSYNTLISAYADCGETAPALGLFSG 130

Query: 308 MMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGC 367
           M  + +  +  T S+ + AC   V L    Q+H   + + F S   V ++L+  Y K G 
Sbjct: 131 MREMGLDMDXFTLSAVITACCDDVGLI--GQLHSVAVSSGFDSYVSVNNALLTYYGKNGD 188

Query: 368 LNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILN 427
           L+D ++VF       + + WN+MI A  QH    +A+ LF +MVR  +  D  TLA +L 
Sbjct: 189 LDDAKRVFYGMGGIRDEVSWNSMIVAYGQHQEGSKALGLFQEMVRRGLNVDMFTLASVLT 248

Query: 428 ACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDS 487
           A T    +  GL +   +    G   N    + LI+L ++ G       ++ +   E D 
Sbjct: 249 AFTCLEDLSGGLQFHGQLI-KTGFHQNSHVGSGLIDLYSKCGGGMSDCRKVFEEITEPDL 307

Query: 488 YLWNAL 493
            LWN +
Sbjct: 308 VLWNTM 313


>gi|449530420|ref|XP_004172193.1| PREDICTED: pentatricopeptide repeat-containing protein At1g53600,
           mitochondrial-like, partial [Cucumis sativus]
          Length = 719

 Score =  307 bits (787), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 167/545 (30%), Positives = 287/545 (52%), Gaps = 36/545 (6%)

Query: 82  QRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNL 141
            R+ P    SN LI+ Y K G   DA ++FD +  K++ S+++M+SG   +G +  AR L
Sbjct: 171 HREKPVIVSSNVLINGYSKVGRVEDAVRIFDGMAEKDVVSWSSMISGLCRVGKIVEARKL 230

Query: 142 FDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEEL 201
           FD M +R+VV+W  MI GY K   +++G   +  +RR  +  N  +   +L  C   +  
Sbjct: 231 FDKMPDRNVVTWTLMIDGYMKMNFLKDGFILFLNMRREGVEVNATTLTVLLEACGSFDRY 290

Query: 202 KLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGY 261
               Q+HG VL  GF  +  +++SI+  Y++C  +  A + FD    +D++TW ++++GY
Sbjct: 291 GEGIQIHGLVLSLGFDVDAYLANSIITMYSRCYSIDAAAKQFDLMVKKDIVTWNSLITGY 350

Query: 262 AKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNG-----LG------------------ 298
            + G++E A  LF  MP+K+ VSWTTLI G+   G     +G                  
Sbjct: 351 VQSGNLEKAVFLFENMPQKDVVSWTTLICGFASEGRIDEFIGLFQMMPEKDAIAWTAVIS 410

Query: 299 --------QKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRS 350
                   + A   F +M+   I+PN  T S  L A AS+  L  G Q+H  + + +  +
Sbjct: 411 GLVSIEEYEIAFHWFIKMLQSVIKPNAFTLSCVLSAGASMAILNQGLQIHAIVTKMSMEN 470

Query: 351 NTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDM 410
           +  + +SL+ MYSKCG ++D  ++F       N + +NT+I+ L Q+G  ++A+ +F  M
Sbjct: 471 DLSIQNSLVSMYSKCGNVDDALKMFYYI-KVPNVVAYNTIITGLAQNGLGKEALEIFTKM 529

Query: 411 VRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGC 470
               + P+ IT   +L+AC H GLV+EG  YF+ M     I P  +H+AC+++LL +AG 
Sbjct: 530 QDDYLVPNHITFLGVLSACVHVGLVEEGRRYFDLMRSLYDIQPEPDHYACMVDLLCRAGM 589

Query: 471 SDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSI 530
            D+ ++ +  MP++    +W A+ G    H  +D+       L +  P S+  + +LS++
Sbjct: 590 FDEAVSLVSSMPFDPHQGVWGAVLGASWTHLRLDVAELAAQNLFELEPNSATPYVILSNL 649

Query: 531 YSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVS----DSLHPMRDVLYSV 586
           +S  G  R  E +R +   R  KK    SWI ++++VH F        ++  M +++Y++
Sbjct: 650 HSISGDERKHELIRLMKKSRGLKKSPGCSWIILKDEVHLFHAGHQSIKNIKEMTEIIYAL 709

Query: 587 LEQLA 591
            E++ 
Sbjct: 710 AEEVG 714



 Score =  179 bits (454), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 120/468 (25%), Positives = 223/468 (47%), Gaps = 48/468 (10%)

Query: 70  LGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGY 129
           L KR +      Q+ +      N  I+   + G   +A  +F+++P KN  S+  +L+ Y
Sbjct: 37  LSKRGNFDSATRQKSSKFLVYCNSQITKLGRNGCIKEAESIFNRMPNKNTVSWTALLTAY 96

Query: 130 ANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFA 189
           A    +  AR +F+ + + +V S+N MI  Y +   V+E  + +  + +     N  S+A
Sbjct: 97  AENSEINKAREVFNKIPDPNVASYNAMITAYHRRNMVDEAFELFSSMPQR----NSVSYA 152

Query: 190 GILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDAR 249
            ++T  V      +  ++H +  V      +V S+ +++ Y+K G + DA R+FD    +
Sbjct: 153 TMITGFVHAGMFDMAEKLHREKPV------IVSSNVLINGYSKVGRVEDAVRIFDGMAEK 206

Query: 250 DVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMM 309
           DV++W++M+SG  ++G +  A KLF++MP++N V+WT +I GY +    +    LF  M 
Sbjct: 207 DVVSWSSMISGLCRVGKIVEARKLFDKMPDRNVVTWTLMIDGYMKMNFLKDGFILFLNMR 266

Query: 310 ILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLN 369
              +  N  T +  L AC S      G Q+HG ++   F  +  + +S+I MYS+C  ++
Sbjct: 267 REGVEVNATTLTVLLEACGSFDRYGEGIQIHGLVLSLGFDVDAYLANSIITMYSRCYSID 326

Query: 370 DGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNAC 429
              + FDL   K++ + WN++I+   Q G  E+A+ LF +M +     D ++   ++   
Sbjct: 327 AAAKQFDLM-VKKDIVTWNSLITGYVQSGNLEKAVFLFENMPQK----DVVSWTTLICGF 381

Query: 430 THSGLVQEGLTYFESMTHD---------LGIIPNQEH-----------------HACLIE 463
              G + E +  F+ M             G++  +E+                 +A  + 
Sbjct: 382 ASEGRIDEFIGLFQMMPEKDAIAWTAVISGLVSIEEYEIAFHWFIKMLQSVIKPNAFTLS 441

Query: 464 LLAQAGCSDQLMNQ-------LEKMPYEHDSYLWNALHGVCRIHGNID 504
            +  AG S  ++NQ       + KM  E+D  + N+L  +    GN+D
Sbjct: 442 CVLSAGASMAILNQGLQIHAIVTKMSMENDLSIQNSLVSMYSKCGNVD 489



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 68/305 (22%), Positives = 147/305 (48%), Gaps = 27/305 (8%)

Query: 220 VVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPE 279
           +V  +S +    + G + +A  +F+    ++ ++WT +++ YA+  ++  A ++FN++P+
Sbjct: 55  LVYCNSQITKLGRNGCIKEAESIFNRMPNKNTVSWTALLTAYAENSEINKAREVFNKIPD 114

Query: 280 KNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQV 339
            N  S+  +I  Y R  +  +A ELF+ M     + N  ++++ +            +++
Sbjct: 115 PNVASYNAMITAYHRRNMVDEAFELFSSMP----QRNSVSYATMITGFVHAGMFDMAEKL 170

Query: 340 HGFLIRTNFRSNTIVMSS--LIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQH 397
           H        R   +++SS  LI+ YSK G + D  ++FD    K+  + W++MIS L + 
Sbjct: 171 H--------REKPVIVSSNVLINGYSKVGRVEDAVRIFDGMAEKD-VVSWSSMISGLCRV 221

Query: 398 GYDEQAIRLFHDMVRSSVKPDK--ITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQ 455
           G   +A +LF  M      PD+  +T  ++++       +++G   F +M  + G+  N 
Sbjct: 222 GKIVEARKLFDKM------PDRNVVTWTLMIDGYMKMNFLKDGFILFLNMRRE-GVEVNA 274

Query: 456 EHHACLIEL---LAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQ 512
                L+E      + G   Q+   +  + ++ D+YL N++  +     +ID   K  D 
Sbjct: 275 TTLTVLLEACGSFDRYGEGIQIHGLVLSLGFDVDAYLANSIITMYSRCYSIDAAAKQFDL 334

Query: 513 LIDQN 517
           ++ ++
Sbjct: 335 MVKKD 339


>gi|224099171|ref|XP_002311390.1| predicted protein [Populus trichocarpa]
 gi|222851210|gb|EEE88757.1| predicted protein [Populus trichocarpa]
          Length = 594

 Score =  307 bits (787), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 169/521 (32%), Positives = 276/521 (52%), Gaps = 41/521 (7%)

Query: 116 VKNLFSYNNMLSGYA---NLGMMKHARNLFDNM-AERDVVSWNTMIIGYAKSGAVEEGLK 171
           +K  +++  +L  +A   NLG + +A+ LFD +   R+   + TMI  YA  G   E   
Sbjct: 60  IKEKYAFGRLLLSFASFDNLGSLNYAQKLFDTVDIPRNSFMYTTMIKAYANFGNPREAFA 119

Query: 172 FYKVL---RRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFL----------- 217
           FY  +   +R+ +  N+F+F  + + C K   +   +Q H Q++   F            
Sbjct: 120 FYSRMLCDQRY-VYPNDFTFTYVFSACSKFNGVFEGKQAHAQMIKFPFEFGVHSWNSLLD 178

Query: 218 ---------------------SNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTT 256
                                 +VV  + +++ Y K G+L +ARRLFDE   RDV++WT 
Sbjct: 179 FYGKVGEVGIVVRRVFDKIEGPDVVSWNCLINGYVKSGDLDEARRLFDEMPERDVVSWTI 238

Query: 257 MVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPN 316
           M+ GYA  G +  AS LF+EMP++N VSW+ LI GY + G   KALELF  M + +++ +
Sbjct: 239 MLVGYADAGFLSEASCLFDEMPKRNLVSWSALIKGYIQIGCYSKALELFKEMQVAKVKMD 298

Query: 317 QHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFD 376
           +   ++ L ACA + +L  G+ +H ++ +   + +  + ++LIDMYSKCG ++   +VF 
Sbjct: 299 EVIVTTLLSACARLGALDQGRWLHMYIDKHGIKVDAHLSTALIDMYSKCGRIDMAWKVFQ 358

Query: 377 LTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQ 436
            T +K+   +W++MI  L  H + E+AI LF  M+   ++P +IT   IL ACTHSGLV 
Sbjct: 359 ETGDKK-VFVWSSMIGGLAMHSFGEKAIELFAKMIECGIEPSEITYINILAACTHSGLVD 417

Query: 437 EGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGV 496
            GL  F  M  +    P  +H+ C+++LL +AG        +E MP + D  +W AL   
Sbjct: 418 VGLQIFNRMVENQKPKPRMQHYGCIVDLLGRAGLLHDAFRVVETMPVKADPAIWRALLSA 477

Query: 497 CRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQ 556
           C++H N+++G +V   LI   PQ+   + L S++Y+A+ +  +  K+R+ +  R  +K  
Sbjct: 478 CKLHRNVELGEQVGRILIKMEPQNDMNYVLFSNVYAAVNRWDISGKLRREMKVRGMQKNP 537

Query: 557 AISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQMGED 597
             S IE+   VH F   D  HP   V+Y +L  L   M ++
Sbjct: 538 GCSSIELNGAVHEFVSRDHSHPQSQVIYELLHILTNHMVQE 578



 Score = 50.1 bits (118), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 42/167 (25%), Positives = 80/167 (47%), Gaps = 9/167 (5%)

Query: 12  RKNLPN-NCLIQSFLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKL 70
           ++NL + + LI+ ++ +   G  S+A+     +    +++    +  +L  CA   +L  
Sbjct: 261 KRNLVSWSALIKGYIQI---GCYSKALELFKEMQVAKVKMDEVIVTTLLSACARLGALDQ 317

Query: 71  GKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYA 130
           G+ +H+++     K     LS  LI MY KCG    A KVF +   K +F +++M+ G A
Sbjct: 318 GRWLHMYIDKHGIKV-DAHLSTALIDMYSKCGRIDMAWKVFQETGDKKVFVWSSMIGGLA 376

Query: 131 NLGMMKHARNLFDNMAERDV----VSWNTMIIGYAKSGAVEEGLKFY 173
                + A  LF  M E  +    +++  ++     SG V+ GL+ +
Sbjct: 377 MHSFGEKAIELFAKMIECGIEPSEITYINILAACTHSGLVDVGLQIF 423


>gi|225445812|ref|XP_002275298.1| PREDICTED: pentatricopeptide repeat-containing protein At4g30700
           [Vitis vinifera]
          Length = 781

 Score =  307 bits (786), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 183/570 (32%), Positives = 284/570 (49%), Gaps = 64/570 (11%)

Query: 27  LISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTP 86
           L+      EAI     + + GI   + T+A +L   AE + L LG  +   L +      
Sbjct: 182 LVKNSCFDEAILIFGDMVKGGIGFDSTTVAAVLPGVAELQDLALGMGIQC-LAMKVGFHS 240

Query: 87  TTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMA 146
             ++   L  +Y KCG                                ++ AR LF  + 
Sbjct: 241 HAYVITGLACLYSKCGE-------------------------------IETARLLFGQIG 269

Query: 147 ERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQ 206
           + D+VS+N MI GY  +   E  ++ +K L       N  S  G++ +      L LTR 
Sbjct: 270 QPDLVSYNAMISGYTCNNETESSVRLFKELLVSGEKVNSSSIVGLIPVFFPFGHLHLTRC 329

Query: 207 VHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGD 266
           +HG      F +   + S+   +                         T + + Y++L +
Sbjct: 330 IHG------FCTKSGVVSNSSVS-------------------------TALTTVYSRLNE 358

Query: 267 MESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCA 326
           +ESA  LF+E  EK+  SW  +I+GY +NGL +KA+ LF  M    +RPN  T +S L A
Sbjct: 359 IESARLLFDESSEKSLASWNAMISGYAQNGLTEKAISLFQEMQKCEVRPNPVTVTSILSA 418

Query: 327 CASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSML 386
           CA + +L  GK VH  + R +F SN  V ++LIDMY+KCG + + +++F +   K N++ 
Sbjct: 419 CAQLGALSLGKWVHDLINRESFESNIFVSTALIDMYAKCGSITEAQRLFSMMPEK-NAVT 477

Query: 387 WNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMT 446
           WN MIS    HGY  +A+ LF++M+ S V P  +T   +L AC+H+GLV+EG   F SM 
Sbjct: 478 WNAMISGYGLHGYGHEALNLFNEMLHSRVSPTGVTFLSVLYACSHAGLVREGDEIFRSMV 537

Query: 447 HDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMG 506
           HD G  P  EH+AC+++LL +AG  D+ ++ + KMP E    +W AL G C IH + ++ 
Sbjct: 538 HDHGFEPLPEHYACMVDLLGRAGNLDKALDFIRKMPVEPGPPVWGALLGACMIHKDANLA 597

Query: 507 RKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENK 566
           R   D+L + +PQ+   + LLS+IYSA         VR ++  R+  K    + IE+ N 
Sbjct: 598 RLASDKLFELDPQNVGYYVLLSNIYSAGQNYPEAASVRGVVKRRKLAKTPGCTLIEVANT 657

Query: 567 VHAFSVSDSLHPMRDVLYSVLEQLAGQMGE 596
           +H F+  D  HP    +Y++LE+L G+M E
Sbjct: 658 LHIFTSGDQSHPQATAIYAMLEKLTGKMRE 687



 Score = 82.4 bits (202), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 69/300 (23%), Positives = 131/300 (43%), Gaps = 36/300 (12%)

Query: 118 NLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLR 177
           +L +   +    ++L  +  A  LF  +   D+  +N +I  ++ + +    +  Y  LR
Sbjct: 41  DLVTVTKLTHKLSHLKAIDQASLLFSTIPNPDLFLYNVLIRAFSLNNSPSSAVSLYTHLR 100

Query: 178 RFS-ISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGEL 236
           + + +  + F++A +++    L    L        +V GF S++ + S+IV  Y K   +
Sbjct: 101 KSTPLEPDNFTYAFVISGASSLGLGLLLHAHS---IVAGFGSDLFVGSAIVACYFKFSRV 157

Query: 237 SDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNG 296
           + AR++FD    RD + W TMVSG  K    + A  +F +M                + G
Sbjct: 158 AAARKVFDGMLERDTVLWNTMVSGLVKNSCFDEAILIFGDM---------------VKGG 202

Query: 297 LGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMS 356
           +G                 +  T ++ L   A +  L  G  +    ++  F S+  V++
Sbjct: 203 IGF----------------DSTTVAAVLPGVAELQDLALGMGIQCLAMKVGFHSHAYVIT 246

Query: 357 SLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVK 416
            L  +YSKCG +   R +F     + + + +N MIS  T +   E ++RLF +++ S  K
Sbjct: 247 GLACLYSKCGEIETARLLFGQI-GQPDLVSYNAMISGYTCNNETESSVRLFKELLVSGEK 305


>gi|359497290|ref|XP_002268807.2| PREDICTED: pentatricopeptide repeat-containing protein
           At3g49710-like [Vitis vinifera]
          Length = 719

 Score =  307 bits (786), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 161/475 (33%), Positives = 262/475 (55%), Gaps = 34/475 (7%)

Query: 123 NNMLSGYANLGMMKHARNLFDNMAE-RDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSI 181
           N +L+ Y   G +  A+ +F  M   RD VSWN+MI+ Y +     + L  ++ + R  +
Sbjct: 177 NALLTYYGKNGDLDDAKRVFYGMGGIRDEVSWNSMIVAYGQHQEGSKALGLFQEMVRRGL 236

Query: 182 SCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARR 241
           + + F+ A +LT    LE+L    Q HGQ++ TGF  N  + S ++D Y+KCG       
Sbjct: 237 NVDMFTLASVLTAFTCLEDLSGGLQFHGQLIKTGFHQNSHVGSGLIDLYSKCG------- 289

Query: 242 LFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNG-LGQK 300
                                  G M    K+F E+ E + V W T+++GY++N    + 
Sbjct: 290 -----------------------GGMSDCRKVFEEITEPDLVLWNTMVSGYSQNEEFLED 326

Query: 301 ALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTI-VMSSLI 359
           ALE F +M  +  RPN  +F   + AC+++ S   GKQ+H   ++++  SN I V ++LI
Sbjct: 327 ALECFRQMQGIGYRPNDCSFVCVISACSNLSSPSQGKQIHSLALKSDIPSNRISVDNALI 386

Query: 360 DMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDK 419
            MYSKCG L D R++FD    + N++  N+MI+   QHG + +++ LF  M+   + P  
Sbjct: 387 AMYSKCGNLQDARRLFDRM-AEHNTVSLNSMIAGYAQHGIEMESLHLFQWMLERQIAPTS 445

Query: 420 ITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLE 479
           IT   +L+AC H+G V+EG  YF  M     I P  EH++C+I+LL +AG   +  N + 
Sbjct: 446 ITFISVLSACAHTGRVEEGWNYFNMMKEKFNIEPEAEHYSCMIDLLGRAGKLSEAENLIA 505

Query: 480 KMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRL 539
           +MP+   S  W +L G CR HGNI++  K  +Q++   P ++A + +LS++Y++ G+   
Sbjct: 506 RMPFNPGSIGWASLLGACRTHGNIELAVKAANQVLQLEPSNAAPYVVLSNMYASAGRWEE 565

Query: 540 VEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQM 594
           V  VR+ + +R  KK+   SWIE++ ++H F   DS HPM   +Y  LE+++G+M
Sbjct: 566 VATVRKFMRDRGVKKKPGCSWIEVKKRIHVFVAEDSSHPMIKEIYEFLEEMSGKM 620



 Score =  188 bits (477), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 116/377 (30%), Positives = 190/377 (50%), Gaps = 38/377 (10%)

Query: 58  ILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVK 117
           +L+ C   + L  GK +H  L +     P+T+ SNH I +Y KCG    ARK F  I   
Sbjct: 14  LLKTCIAERDLSTGKSLH-SLYIKSFIPPSTYFSNHFILLYSKCGRLAWARKAFQDISDP 72

Query: 118 NLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLR 177
           N+FS+N +++ YA       A  LFD + E D+VS+NT+I  YA  G     L  +  +R
Sbjct: 73  NVFSFNAIIAAYAKESRPLIAHQLFDQIPEPDLVSYNTLISAYADCGETAPALGLFSGMR 132

Query: 178 RFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELS 237
              +  + F+ + ++T C   +++ L  Q+H   + +GF S V ++++++  Y K G+L 
Sbjct: 133 EMGLDMDGFTLSAVITACC--DDVGLIGQLHSVAVSSGFDSYVSVNNALLTYYGKNGDLD 190

Query: 238 DARRLFDETDA-RDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNG 296
           DA+R+F      RD ++W +M+  Y +  +                              
Sbjct: 191 DAKRVFYGMGGIRDEVSWNSMIVAYGQHQE------------------------------ 220

Query: 297 LGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMS 356
            G KAL LF  M+   +  +  T +S L A   +  L  G Q HG LI+T F  N+ V S
Sbjct: 221 -GSKALGLFQEMVRRGLNVDMFTLASVLTAFTCLEDLSGGLQFHGQLIKTGFHQNSHVGS 279

Query: 357 SLIDMYSKC-GCLNDGRQVFDLTDNKENSMLWNTMISALTQH-GYDEQAIRLFHDMVRSS 414
            LID+YSKC G ++D R+VF+    + + +LWNTM+S  +Q+  + E A+  F  M    
Sbjct: 280 GLIDLYSKCGGGMSDCRKVFEEI-TEPDLVLWNTMVSGYSQNEEFLEDALECFRQMQGIG 338

Query: 415 VKPDKITLAVILNACTH 431
            +P+  +   +++AC++
Sbjct: 339 YRPNDCSFVCVISACSN 355



 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 87/306 (28%), Positives = 148/306 (48%), Gaps = 3/306 (0%)

Query: 188 FAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETD 247
           F  +L  C+   +L   + +H   + +    +   S+  +  Y+KCG L+ AR+ F +  
Sbjct: 11  FRHLLKTCIAERDLSTGKSLHSLYIKSFIPPSTYFSNHFILLYSKCGRLAWARKAFQDIS 70

Query: 248 ARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTR 307
             +V ++  +++ YAK      A +LF+++PE + VS+ TLI+ Y   G    AL LF+ 
Sbjct: 71  DPNVFSFNAIIAAYAKESRPLIAHQLFDQIPEPDLVSYNTLISAYADCGETAPALGLFSG 130

Query: 308 MMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGC 367
           M  + +  +  T S+ + AC   V L    Q+H   + + F S   V ++L+  Y K G 
Sbjct: 131 MREMGLDMDGFTLSAVITACCDDVGLI--GQLHSVAVSSGFDSYVSVNNALLTYYGKNGD 188

Query: 368 LNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILN 427
           L+D ++VF       + + WN+MI A  QH    +A+ LF +MVR  +  D  TLA +L 
Sbjct: 189 LDDAKRVFYGMGGIRDEVSWNSMIVAYGQHQEGSKALGLFQEMVRRGLNVDMFTLASVLT 248

Query: 428 ACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDS 487
           A T    +  GL +   +    G   N    + LI+L ++ G       ++ +   E D 
Sbjct: 249 AFTCLEDLSGGLQFHGQLI-KTGFHQNSHVGSGLIDLYSKCGGGMSDCRKVFEEITEPDL 307

Query: 488 YLWNAL 493
            LWN +
Sbjct: 308 VLWNTM 313


>gi|15222917|ref|NP_175445.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75213175|sp|Q9SX45.1|PPR75_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g50270
 gi|5734776|gb|AAD50041.1|AC007980_6 Hypothetical protein [Arabidopsis thaliana]
 gi|332194410|gb|AEE32531.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 596

 Score =  307 bits (786), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 157/477 (32%), Positives = 255/477 (53%), Gaps = 34/477 (7%)

Query: 120 FSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRF 179
           F  N+++SGY++ G+   A  LFD   ++DVV+W  MI G+ ++G+  E + ++  +++ 
Sbjct: 139 FVRNSLISGYSSSGLFDFASRLFDGAEDKDVVTWTAMIDGFVRNGSASEAMVYFVEMKKT 198

Query: 180 SISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLS-NVVISSSIVDAYAKCGELSD 238
            ++ NE +   +L    K+E+++  R VHG  L TG +  +V I SS+VD Y KC    D
Sbjct: 199 GVAANEMTVVSVLKAAGKVEDVRFGRSVHGLYLETGRVKCDVFIGSSLVDMYGKCSCYDD 258

Query: 239 ARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLG 298
                                          A K+F+EMP +N V+WT LIAGY ++   
Sbjct: 259 -------------------------------AQKVFDEMPSRNVVTWTALIAGYVQSRCF 287

Query: 299 QKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSL 358
            K + +F  M+   + PN+ T SS L ACA + +L  G++VH ++I+ +   NT   ++L
Sbjct: 288 DKGMLVFEEMLKSDVAPNEKTLSSVLSACAHVGALHRGRRVHCYMIKNSIEINTTAGTTL 347

Query: 359 IDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPD 418
           ID+Y KCGCL +   VF+    K N   W  MI+    HGY   A  LF+ M+ S V P+
Sbjct: 348 IDLYVKCGCLEEAILVFERLHEK-NVYTWTAMINGFAAHGYARDAFDLFYTMLSSHVSPN 406

Query: 419 KITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQL 478
           ++T   +L+AC H GLV+EG   F SM     + P  +H+AC+++L  + G  ++    +
Sbjct: 407 EVTFMAVLSACAHGGLVEEGRRLFLSMKGRFNMEPKADHYACMVDLFGRKGLLEEAKALI 466

Query: 479 EKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGR 538
           E+MP E  + +W AL G C +H + ++G+    ++I   P  S  + LL+++YS      
Sbjct: 467 ERMPMEPTNVVWGALFGSCLLHKDYELGKYAASRVIKLQPSHSGRYTLLANLYSESQNWD 526

Query: 539 LVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMR-DVLYSVLEQLAGQM 594
            V +VR+ + ++Q  K    SWIE++ K+  F   D   P+  D LY  L+ +  QM
Sbjct: 527 EVARVRKQMKDQQVVKSPGFSWIEVKGKLCEFIAFDDKKPLESDDLYKTLDTVGVQM 583



 Score =  146 bits (369), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 105/417 (25%), Positives = 188/417 (45%), Gaps = 42/417 (10%)

Query: 135 MKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKF--YKVLRRFSISCNEFSFAGIL 192
            ++AR L   +    +  W+++I  ++    +   L F  Y+ +RR  +  +  +F  +L
Sbjct: 52  FRYARRLLCQLQTLSIQLWDSLIGHFSGGITLNRRLSFLAYRHMRRNGVIPSRHTFPPLL 111

Query: 193 TICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVL 252
               KL +     Q H  ++  G  S+  + +S                           
Sbjct: 112 KAVFKLRDSN-PFQFHAHIVKFGLDSDPFVRNS--------------------------- 143

Query: 253 TWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILR 312
               ++SGY+  G  + AS+LF+   +K+ V+WT +I G+ RNG   +A+  F  M    
Sbjct: 144 ----LISGYSSSGLFDFASRLFDGAEDKDVVTWTAMIDGFVRNGSASEAMVYFVEMKKTG 199

Query: 313 IRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTN-FRSNTIVMSSLIDMYSKCGCLNDG 371
           +  N+ T  S L A   +  ++ G+ VHG  + T   + +  + SSL+DMY KC C +D 
Sbjct: 200 VAANEMTVVSVLKAAGKVEDVRFGRSVHGLYLETGRVKCDVFIGSSLVDMYGKCSCYDDA 259

Query: 372 RQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTH 431
           ++VFD   ++ N + W  +I+   Q    ++ + +F +M++S V P++ TL+ +L+AC H
Sbjct: 260 QKVFDEMPSR-NVVTWTALIAGYVQSRCFDKGMLVFEEMLKSDVAPNEKTLSSVLSACAH 318

Query: 432 SGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWN 491
            G +  G      M  +  I  N      LI+L  + GC ++ +   E++ +E + Y W 
Sbjct: 319 VGALHRGRRVHCYMIKN-SIEINTTAGTTLIDLYVKCGCLEEAILVFERL-HEKNVYTWT 376

Query: 492 ALHGVCRIHGNIDMGRKVVDQLIDQ-NPQSSATHGLLSSIYSALGKGRLVEKVRQLI 547
           A+      HG     R   D      +   S       ++ SA   G LVE+ R+L 
Sbjct: 377 AMINGFAAHG---YARDAFDLFYTMLSSHVSPNEVTFMAVLSACAHGGLVEEGRRLF 430



 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 85/375 (22%), Positives = 164/375 (43%), Gaps = 69/375 (18%)

Query: 27  LISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVH-LHLKLTQRKT 85
            +  G  SEA+     + + G+     T+  +L+   + + ++ G+ VH L+L+ T R  
Sbjct: 179 FVRNGSASEAMVYFVEMKKTGVAANEMTVVSVLKAAGKVEDVRFGRSVHGLYLE-TGRVK 237

Query: 86  PTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNM 145
              F+ + L+ MY KC    DA+KVF                               D M
Sbjct: 238 CDVFIGSSLVDMYGKCSCYDDAQKVF-------------------------------DEM 266

Query: 146 AERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTR 205
             R+VV+W  +I GY +S   ++G+  ++ + +  ++ NE + + +L+ C  +  L   R
Sbjct: 267 PSRNVVTWTALIAGYVQSRCFDKGMLVFEEMLKSDVAPNEKTLSSVLSACAHVGALHRGR 326

Query: 206 QVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLG 265
           +VH  ++      N    ++++D Y KCG L +A  +F+    ++V TWT M++G+A   
Sbjct: 327 RVHCYMIKNSIEINTTAGTTLIDLYVKCGCLEEAILVFERLHEKNVYTWTAMINGFAA-- 384

Query: 266 DMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLC 325
                                    GY R+     A +LF  M+   + PN+ TF + L 
Sbjct: 385 ------------------------HGYARD-----AFDLFYTMLSSHVSPNEVTFMAVLS 415

Query: 326 ACASIVSLKHGKQVHGFLI---RTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKE 382
           ACA    ++ G+++  FL    R N        + ++D++ + G L + + + +    + 
Sbjct: 416 ACAHGGLVEEGRRL--FLSMKGRFNMEPKADHYACMVDLFGRKGLLEEAKALIERMPMEP 473

Query: 383 NSMLWNTMISALTQH 397
            +++W  +  +   H
Sbjct: 474 TNVVWGALFGSCLLH 488


>gi|115447355|ref|NP_001047457.1| Os02g0620800 [Oryza sativa Japonica Group]
 gi|47847758|dbj|BAD21535.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|47847799|dbj|BAD21575.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113536988|dbj|BAF09371.1| Os02g0620800 [Oryza sativa Japonica Group]
          Length = 530

 Score =  307 bits (786), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 189/541 (34%), Positives = 287/541 (53%), Gaps = 39/541 (7%)

Query: 59  LQQCAESKSLKLGKRVHLHLKLTQRKTP--TTFLSNHLISMYFKCGSDVDARKVFDKIPV 116
           L +CA    LK   ++H H  +T R     TTF      S+   C     AR++FD  P 
Sbjct: 17  LHRCATLAHLK---QLHAHAVVTGRAAAQTTTFHLLRFASLRLSCLPY--ARRLFDATPS 71

Query: 117 KNLFSYNNMLSGYANLGMM--KHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYK 174
            N+F Y+ MLS YA       +HAR   D++A                         F +
Sbjct: 72  PNVFLYSAMLSAYAAASSHSQEHAR---DSLA------------------------LFLR 104

Query: 175 VLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCG 234
           +LRR   + N+F +  +L     +  ++L R +H      GF  +  I +S++D Y++ G
Sbjct: 105 MLRRGRPAPNQFVYPLVLRAACAIG-VQLVRSIHCHACKDGFYGHDFIRTSLLDGYSRYG 163

Query: 235 ELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTR 294
            + DAR+LFD    R+V++WT +VSGYA+ G +  A  LF  MP+++  +W  +IAG T+
Sbjct: 164 MMGDARKLFDGLTDRNVVSWTALVSGYARAGKVGDAIVLFERMPQRDVPAWNAIIAGCTQ 223

Query: 295 NGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIV 354
           NGL  +A+ +F RM+    RPN  T S  L AC  +  LK GK +HG+  R+     + V
Sbjct: 224 NGLFVEAVGIFRRMVDEGFRPNGTTVSCLLSACGHLGMLKIGKVIHGYAWRSCVGFGSSV 283

Query: 355 MSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSS 414
           ++ LIDMY KCG L + + +FD   ++  +  WN++I+ L  HG  E AI +F+ M    
Sbjct: 284 VNGLIDMYGKCGNLMEAKWIFDAFSDRGLTT-WNSLINCLALHGCSESAIAVFNSMRNEG 342

Query: 415 VKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQL 474
           V+PD++T   +LNACTH G V EGL YFE M  + GI P  EH+ C+++LL +AG     
Sbjct: 343 VQPDEVTFVGLLNACTHGGFVDEGLRYFELMCDEHGIEPEIEHYGCVVDLLCRAGRFQDA 402

Query: 475 MNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSAL 534
           MN +  M  + D  +W +L   CRIH ++++    +  L+D NP ++    +L+++YS  
Sbjct: 403 MNFINDMKVQPDEVIWGSLLNACRIHRHLELAEHAIRNLLDLNPSNANYVVMLANLYSEG 462

Query: 535 GKGRLVEKVRQLINER-QFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQ 593
           G    V KVR+L+ E    KK    SWIE++ K   F   D  HP  + +Y  L++LA  
Sbjct: 463 GFWEEVRKVRKLMKEDVTGKKLPGCSWIEVDRKTRRFYSGDDGHPESEDIYDTLDKLATT 522

Query: 594 M 594
           M
Sbjct: 523 M 523



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 77/270 (28%), Positives = 135/270 (50%), Gaps = 9/270 (3%)

Query: 45  QRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSD 104
           +RG   P + +  ++ + A +  ++L + +H H           F+   L+  Y + G  
Sbjct: 107 RRGRPAPNQFVYPLVLRAACAIGVQLVRSIHCH-ACKDGFYGHDFIRTSLLDGYSRYGMM 165

Query: 105 VDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSG 164
            DARK+FD +  +N+ S+  ++SGYA  G +  A  LF+ M +RDV +WN +I G  ++G
Sbjct: 166 GDARKLFDGLTDRNVVSWTALVSGYARAGKVGDAIVLFERMPQRDVPAWNAIIAGCTQNG 225

Query: 165 AVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVL--VTGFLSNVVI 222
              E +  ++ +       N  + + +L+ C  L  LK+ + +HG       GF S+VV 
Sbjct: 226 LFVEAVGIFRRMVDEGFRPNGTTVSCLLSACGHLGMLKIGKVIHGYAWRSCVGFGSSVV- 284

Query: 223 SSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMP---- 278
            + ++D Y KCG L +A+ +FD    R + TW ++++  A  G  ESA  +FN M     
Sbjct: 285 -NGLIDMYGKCGNLMEAKWIFDAFSDRGLTTWNSLINCLALHGCSESAIAVFNSMRNEGV 343

Query: 279 EKNPVSWTTLIAGYTRNGLGQKALELFTRM 308
           + + V++  L+   T  G   + L  F  M
Sbjct: 344 QPDEVTFVGLLNACTHGGFVDEGLRYFELM 373


>gi|356570919|ref|XP_003553630.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g06540-like [Glycine max]
          Length = 622

 Score =  307 bits (786), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 150/456 (32%), Positives = 258/456 (56%), Gaps = 8/456 (1%)

Query: 153 WNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVL 212
           +N +I G + S   E    +Y    RF +  +  +   ++  C +LE   +  Q HGQ +
Sbjct: 85  YNALIRGCSTSENPENSFHYYIKALRFGLLPDNITHPFLVKACAQLENAPMGMQTHGQAI 144

Query: 213 VTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASK 272
             GF  +  + +S+V  YA  G+++ AR +F      DV++WT M++GY + GD +SA +
Sbjct: 145 KHGFEQDFYVQNSLVHMYASVGDINAARSVFQRMCRFDVVSWTCMIAGYHRCGDAKSARE 204

Query: 273 LFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVS 332
           LF+ MPE+N V+W+T+I+GY RN   +KA+E F  +    +  N+      + +CA + +
Sbjct: 205 LFDRMPERNLVTWSTMISGYARNNCFEKAVETFEALQAEGVVANETVMVGVISSCAHLGA 264

Query: 333 LKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMIS 392
           L  G++ H +++R     N I+ ++++DMY++CG +     VF+    K + + W  +I+
Sbjct: 265 LAMGEKAHEYVMRNKLSLNLILGTAVVDMYARCGNVEKAVMVFEQLPEK-DVLCWTALIA 323

Query: 393 ALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGII 452
            L  HGY E+A+  F +M +    P  IT   +L AC+H+G+V+ GL  FESM  D G+ 
Sbjct: 324 GLAMHGYAEKALWYFSEMAKKGFVPRDITFTAVLTACSHAGMVERGLEIFESMKRDHGVE 383

Query: 453 PNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQ 512
           P  EH+ C+++LL +AG   +    + KMP + ++ +W AL G CRIH N+++G +V   
Sbjct: 384 PRLEHYGCMVDLLGRAGKLRKAEKFVLKMPVKPNAPIWRALLGACRIHKNVEVGERVGKI 443

Query: 513 LIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSV 572
           L++  P+ S  + LLS+IY+   K + V  +RQ++ ++  +K    S IEI+ KVH F++
Sbjct: 444 LLEMQPEYSGHYVLLSNIYARANKWKDVTVMRQMMKDKGVRKPPGYSLIEIDGKVHEFTI 503

Query: 573 SDSLHPMRDVLYSVLE-------QLAGQMGEDAPSL 601
            D  HP  + +  + E       +LAG +G  A ++
Sbjct: 504 GDKTHPEIEKIERIWEDIILPKIKLAGYVGNTAETM 539



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 76/259 (29%), Positives = 141/259 (54%), Gaps = 5/259 (1%)

Query: 54  TLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDK 113
           T  F+++ CA+ ++  +G + H    +        ++ N L+ MY   G    AR VF +
Sbjct: 119 THPFLVKACAQLENAPMGMQTHGQ-AIKHGFEQDFYVQNSLVHMYASVGDINAARSVFQR 177

Query: 114 IPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFY 173
           +   ++ S+  M++GY   G  K AR LFD M ER++V+W+TMI GYA++   E+ ++ +
Sbjct: 178 MCRFDVVSWTCMIAGYHRCGDAKSARELFDRMPERNLVTWSTMISGYARNNCFEKAVETF 237

Query: 174 KVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKC 233
           + L+   +  NE    G+++ C  L  L +  + H  V+      N+++ +++VD YA+C
Sbjct: 238 EALQAEGVVANETVMVGVISSCAHLGALAMGEKAHEYVMRNKLSLNLILGTAVVDMYARC 297

Query: 234 GELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKN----PVSWTTLI 289
           G +  A  +F++   +DVL WT +++G A  G  E A   F+EM +K      +++T ++
Sbjct: 298 GNVEKAVMVFEQLPEKDVLCWTALIAGLAMHGYAEKALWYFSEMAKKGFVPRDITFTAVL 357

Query: 290 AGYTRNGLGQKALELFTRM 308
              +  G+ ++ LE+F  M
Sbjct: 358 TACSHAGMVERGLEIFESM 376


>gi|356551361|ref|XP_003544044.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g02330-like [Glycine max]
          Length = 688

 Score =  307 bits (786), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 162/546 (29%), Positives = 287/546 (52%), Gaps = 33/546 (6%)

Query: 43  LAQRGIRLPAETLAF--ILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFK 100
           L   G+R+  +   F  +L+ C    +++LG+++H                     M  K
Sbjct: 140 LLYEGVRVRLDFFVFPVVLKICCGLCAVELGRQMH--------------------GMALK 179

Query: 101 CGSDV-DARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNM----AERDVVSWNT 155
              D+  A ++F +   K+  SYN M++GY   G +  A+ LFD M     ++D +SWN+
Sbjct: 180 HDGDMKSAFEMFSRFSRKSAASYNAMIAGYWENGNLFKAKELFDRMEQEGVQKDRISWNS 239

Query: 156 MIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTG 215
           MI GY      +E    ++ L +  I  + F+   +L  C  +  ++  ++ H   +V G
Sbjct: 240 MISGYVDGSLFDEAYSLFRDLLKEGIEPDSFTLGSVLAGCADMASIRRGKEAHSLAIVRG 299

Query: 216 FLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFN 275
             SN ++  ++V+ Y+KC ++  A+  FD    RD+ TW  ++SGYA+    E   +L  
Sbjct: 300 LQSNSIVGGALVEMYSKCQDIVAAQMAFDGVSERDLPTWNALISGYARCNQAEKIRELHQ 359

Query: 276 EMP----EKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIV 331
           +M     E N  +W  +IAGY  N     A++LFT M I  +RP+ +T    L AC+ + 
Sbjct: 360 KMRRDGFEPNVYTWNGIIAGYVENKQYDSAMQLFTEMQIANLRPDIYTVGIILAACSRLA 419

Query: 332 SLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMI 391
           +++ GKQVH + IR    S+  + ++L+DMY+KCG +    +V+++  N  N +  N M+
Sbjct: 420 TIQRGKQVHAYSIRAGHDSDVHIGAALVDMYAKCGDVKHCYRVYNMISNP-NLVSHNAML 478

Query: 392 SALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGI 451
           +A   HG+ E+ I LF  M+ S V+PD +T   +L++C H+G ++ G      M     +
Sbjct: 479 TAYAMHGHGEEGIALFRRMLASKVRPDHVTFLAVLSSCVHAGSLEIGHECLALMV-AYNV 537

Query: 452 IPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVD 511
           +P+ +H+ C+++LL++AG   +    ++ +P E D+  WNAL G C IH  +D+G    +
Sbjct: 538 MPSLKHYTCMVDLLSRAGQLYEAYELIKNLPTEADAVTWNALLGGCFIHNEVDLGEIAAE 597

Query: 512 QLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFS 571
           +LI+  P +   + +L+++Y++ GK   + + RQL+ +   +K    SWIE  + +H F 
Sbjct: 598 KLIELEPNNPGNYVMLANLYASAGKWHYLTQTRQLMKDMGMQKRPGCSWIEDRDGIHVFV 657

Query: 572 VSDSLH 577
             D  H
Sbjct: 658 AKDIYH 663



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 101/410 (24%), Positives = 182/410 (44%), Gaps = 73/410 (17%)

Query: 77  HLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYN-----NMLSGYAN 131
           HL L   + P+   S    S+   CGS +  +++     +K+ F+ +      +L  YA 
Sbjct: 40  HLTLLYHEPPS---STTYASILDSCGSPILGKQLHAH-SIKSGFNAHEFVTTKLLQMYAR 95

Query: 132 LGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLK-----FYKVLRRFSISCNEF 186
               ++A ++FD M  R++ SW  ++  Y + G  EE         Y+ +R   +  + F
Sbjct: 96  NCSFENACHVFDTMPLRNLHSWTALLRVYIEMGFFEEAFFLFEQLLYEGVR---VRLDFF 152

Query: 187 SFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDET 246
            F  +L IC  L  ++L RQ+HG  L                     G++  A  +F   
Sbjct: 153 VFPVVLKICCGLCAVELGRQMHGMAL------------------KHDGDMKSAFEMFSRF 194

Query: 247 DARDVLTWTTMVSGYAKLGDMESASKLFNEMP----EKNPVSWTTLIAGYTRNGLGQKAL 302
             +   ++  M++GY + G++  A +LF+ M     +K+ +SW ++I+GY    L  +A 
Sbjct: 195 SRKSAASYNAMIAGYWENGNLFKAKELFDRMEQEGVQKDRISWNSMISGYVDGSLFDEAY 254

Query: 303 ELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMY 362
            LF  ++   I P+  T  S L  CA + S++ GK+ H   I    +SN+IV  +L++MY
Sbjct: 255 SLFRDLLKEGIEPDSFTLGSVLAGCADMASIRRGKEAHSLAIVRGLQSNSIVGGALVEMY 314

Query: 363 SKCGCLNDGRQVFDLTDNKE----------------------------------NSMLWN 388
           SKC  +   +  FD    ++                                  N   WN
Sbjct: 315 SKCQDIVAAQMAFDGVSERDLPTWNALISGYARCNQAEKIRELHQKMRRDGFEPNVYTWN 374

Query: 389 TMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEG 438
            +I+   ++   + A++LF +M  ++++PD  T+ +IL AC+    +Q G
Sbjct: 375 GIIAGYVENKQYDSAMQLFTEMQIANLRPDIYTVGIILAACSRLATIQRG 424



 Score = 76.3 bits (186), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 71/328 (21%), Positives = 142/328 (43%), Gaps = 60/328 (18%)

Query: 187 SFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDET 246
           ++A IL  C       L +Q+H   + +GF ++  +++ ++  YA+     +A  +FD  
Sbjct: 53  TYASILDSC---GSPILGKQLHAHSIKSGFNAHEFVTTKLLQMYARNCSFENACHVFDTM 109

Query: 247 DARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFT 306
             R++ +WT ++  Y ++G  E A  LF ++          L  G               
Sbjct: 110 PLRNLHSWTALLRVYIEMGFFEEAFFLFEQL----------LYEG--------------- 144

Query: 307 RMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTN-------------FRSNTI 353
               +R+R +   F   L  C  + +++ G+Q+HG  ++ +              R +  
Sbjct: 145 ----VRVRLDFFVFPVVLKICCGLCAVELGRQMHGMALKHDGDMKSAFEMFSRFSRKSAA 200

Query: 354 VMSSLIDMYSKCGCLNDGRQVFDLTDN---KENSMLWNTMISALTQHGYDEQAIRLFHDM 410
             +++I  Y + G L   +++FD  +    +++ + WN+MIS        ++A  LF D+
Sbjct: 201 SYNAMIAGYWENGNLFKAKELFDRMEQEGVQKDRISWNSMISGYVDGSLFDEAYSLFRDL 260

Query: 411 VRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHA----CLIELLA 466
           ++  ++PD  TL  +L  C     ++ G        H L I+   + ++     L+E+ +
Sbjct: 261 LKEGIEPDSFTLGSVLAGCADMASIRRG-----KEAHSLAIVRGLQSNSIVGGALVEMYS 315

Query: 467 QAGCSDQLMNQLE-KMPYEHDSYLWNAL 493
           +  C D +  Q+      E D   WNAL
Sbjct: 316 K--CQDIVAAQMAFDGVSERDLPTWNAL 341


>gi|414866530|tpg|DAA45087.1| TPA: hypothetical protein ZEAMMB73_840863 [Zea mays]
          Length = 851

 Score =  307 bits (786), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 171/550 (31%), Positives = 277/550 (50%), Gaps = 72/550 (13%)

Query: 86  PTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNM 145
           P+      L+  Y + G   DA ++F ++P +N  SY  +L G+ + G +  AR LFD M
Sbjct: 110 PSVVSFTSLLRGYVRHGLLADAIQLFRQMPERNHISYTVLLGGFLDAGRVDEARKLFDEM 169

Query: 146 AERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTR 205
             +DVV+W  M+ GY + G V+E    +  + +                           
Sbjct: 170 PAKDVVAWTAMLSGYCQVGRVDEARTLFDEMPK--------------------------- 202

Query: 206 QVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLG 265
                        NVV  +++V  YA+ G+++ AR+LF+    R+ ++WT M+ GY + G
Sbjct: 203 ------------RNVVSWTAMVSGYAQNGQVNLARKLFEVMPERNEVSWTAMLFGYIQAG 250

Query: 266 DMESASKLFNEMP-------------------------------EKNPVSWTTLIAGYTR 294
            +E A +LFN MP                               E++  +W+ +I  Y +
Sbjct: 251 RIEDAEELFNAMPDHPLAACNGMIVGFGQQGMVDAAKSVFDRMCERDDGTWSAIIKAYEQ 310

Query: 295 NGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIV 354
           N    +AL  F  M+ + IRPN  +  S L  CA++  L +G++VHG ++R +F  +   
Sbjct: 311 NEFLMEALSTFREMLHIGIRPNYPSVISILTVCAALAVLDYGREVHGAMLRRSFDMDIYA 370

Query: 355 MSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSS 414
           +S+LI MY KCG L+  ++VF + + K+  M WN+MI+   QHG  E+A+ +F DM  + 
Sbjct: 371 VSALITMYIKCGNLDKAKRVFHMFEPKDVVM-WNSMITGYAQHGLGEEALHIFDDMRLAG 429

Query: 415 VKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQL 474
           + PD IT    L AC+++G V+EG   F SM    GI P  EH+AC+++LL +AG  D+ 
Sbjct: 430 MVPDGITYIGALTACSYTGKVKEGRDIFNSMRTKSGIKPGLEHYACMVDLLGRAGLVDEA 489

Query: 475 MNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSAL 534
           +  ++ MP E D+ +W AL G CR+H N ++      +L++  P ++  + LLS IY++ 
Sbjct: 490 LYLIKTMPVEPDAVIWGALMGACRMHKNAEIAEISAKKLLELEPGNAGPYVLLSHIYTSS 549

Query: 535 GKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSL-HPMRDVLYSVLEQLAGQ 593
           G+      +R+ I+ R   K    SWIE + +VH F   D L H     +  +LE+L G 
Sbjct: 550 GRWEDASNMRKFISSRHLNKSLGCSWIEYDKRVHLFKSGDVLAHQEHASILKMLEKLDGL 609

Query: 594 MGEDAPSLDA 603
           + E   S D 
Sbjct: 610 LMESGYSADG 619



 Score = 72.0 bits (175), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 71/302 (23%), Positives = 120/302 (39%), Gaps = 36/302 (11%)

Query: 241 RLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQK 300
           R    +    V+     ++  A+ G+ME A   F  MP +   S+  L+AGY RN L   
Sbjct: 7   RFLPSSSTPAVVDANARIARLARTGNMEGARATFEAMPLRTTASYNALLAGYFRNHLPDA 66

Query: 301 ALELFTRM----------MILRIRPNQHTFSSCLCACASI---------VSLKHGKQVHG 341
           AL +F RM          +I  +   +HT      A A+I          SL  G   HG
Sbjct: 67  ALRVFHRMPTRDLASYNALISGLSLRRHTLPDAAAALATIPYPPSVVSFTSLLRGYVRHG 126

Query: 342 F------LIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALT 395
                  L R     N I  + L+  +   G +++ R++FD    K + + W  M+S   
Sbjct: 127 LLADAIQLFRQMPERNHISYTVLLGGFLDAGRVDEARKLFDEMPAK-DVVAWTAMLSGYC 185

Query: 396 QHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQ 455
           Q G  ++A  LF +M + +V    ++   +++    +G V      FE M        N+
Sbjct: 186 QVGRVDEARTLFDEMPKRNV----VSWTAMVSGYAQNGQVNLARKLFEVMPER-----NE 236

Query: 456 EHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLID 515
                ++    QAG  +        MP +H     N +       G +D  + V D++ +
Sbjct: 237 VSWTAMLFGYIQAGRIEDAEELFNAMP-DHPLAACNGMIVGFGQQGMVDAAKSVFDRMCE 295

Query: 516 QN 517
           ++
Sbjct: 296 RD 297



 Score = 65.5 bits (158), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 45/149 (30%), Positives = 76/149 (51%), Gaps = 5/149 (3%)

Query: 33  LSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSN 92
           L EA+S+   +   GIR    ++  IL  CA    L  G+ VH  + L +      +  +
Sbjct: 314 LMEALSTFREMLHIGIRPNYPSVISILTVCAALAVLDYGREVHGAM-LRRSFDMDIYAVS 372

Query: 93  HLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVS 152
            LI+MY KCG+   A++VF     K++  +N+M++GYA  G+ + A ++FD+M    +V 
Sbjct: 373 ALITMYIKCGNLDKAKRVFHMFEPKDVVMWNSMITGYAQHGLGEEALHIFDDMRLAGMVP 432

Query: 153 WNTMIIGY----AKSGAVEEGLKFYKVLR 177
                IG     + +G V+EG   +  +R
Sbjct: 433 DGITYIGALTACSYTGKVKEGRDIFNSMR 461


>gi|242045336|ref|XP_002460539.1| hypothetical protein SORBIDRAFT_02g030160 [Sorghum bicolor]
 gi|241923916|gb|EER97060.1| hypothetical protein SORBIDRAFT_02g030160 [Sorghum bicolor]
          Length = 630

 Score =  307 bits (786), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 163/486 (33%), Positives = 267/486 (54%), Gaps = 6/486 (1%)

Query: 90  LSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERD 149
           + N LISMY KC    DA + F ++  +N  S+ ++L  Y     ++ A+ LFD M  R+
Sbjct: 110 VGNSLISMYAKCARAEDAARAFGEMRERNALSWCSLLDAYVASDDLRLAQELFDEMPNRN 169

Query: 150 VVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHG 209
            V+WNT+++GY++SG     L  +  +R   ++C++ +   ++  C +L        +H 
Sbjct: 170 NVAWNTLLMGYSRSGNANHCLLLFNKMRMAGLTCDDATLCILVDACTELANPSAGSAIHK 229

Query: 210 QVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMES 269
            V+ +G+ +   +S+S++  Y K   L DA R+F+  + + +++W +++  Y KLG +E 
Sbjct: 230 IVVQSGWNAMAEVSNSLISLYTKFSLLDDAVRIFESMEVQTIVSWNSLIDAYMKLGCVEK 289

Query: 270 ASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILR-IRPNQHTFSSCLCACA 328
           A+ LF  +PE N +SWT +I G  RNGL  +AL LF  M+    I P+  TF + L ACA
Sbjct: 290 ATSLFGSVPETNVISWTAMIGGLARNGLADEALILFVEMLAHEHIHPDDFTFGAVLHACA 349

Query: 329 SIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWN 388
           +  SL  G+ VH  + ++ F S   V +SLIDMY+KCG L  G  VF    NK+  + WN
Sbjct: 350 TAASLASGRMVHCRVFQSGFVSYLYVANSLIDMYAKCGDLEGGTNVFSTIVNKD-LVSWN 408

Query: 389 TMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHD 448
           TM+     +G   +A+ ++  M    V PD++T   +L AC+HSGL++ G T+FE M   
Sbjct: 409 TMLFGFAINGLPNEALVVYDSMKSHDVCPDEVTFTGLLTACSHSGLLEHGKTFFELMVSV 468

Query: 449 LGIIPNQEHHACLIELLAQAGCSDQLMNQLEK---MPYEHDSYLWNALHGVCRI-HGNID 504
            GI P  EH +C++++ A++G   + M  L++   M   H+S +  AL   C + H N  
Sbjct: 469 HGIQPKPEHLSCILDMYARSGNITKAMEMLDRYSEMIQTHNSDIREALLSACSLEHLNFS 528

Query: 505 MGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIE 564
           + RK V  ++         + +LS+++ A G+    E+VR  + E   KK    SWIE++
Sbjct: 529 VARKAVKDMVATKSAGDVGYVMLSNLFCATGQWNQAERVRIAMAEYGIKKSPGCSWIEVQ 588

Query: 565 NKVHAF 570
             V  F
Sbjct: 589 GAVKVF 594



 Score =  155 bits (393), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 95/355 (26%), Positives = 170/355 (47%), Gaps = 9/355 (2%)

Query: 115 PVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYK 174
           P   L +  + ++     G    AR +FD M  RD V+WN M+  YA++G   + L  + 
Sbjct: 7   PFAGLVAATSRIASLGRAGDAASARAVFDAMPRRDAVAWNAMLTAYARAGQPRDALALFS 66

Query: 175 VLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCG 234
                + + + FS    L+    L       Q+H ++L  G  + + + +S++  YAKC 
Sbjct: 67  R----APAPDAFSLTAALSAAAALRSPTAGAQLHARLLRVGLRALLPVGNSLISMYAKCA 122

Query: 235 ELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTR 294
              DA R F E   R+ L+W +++  Y    D+  A +LF+EMP +N V+W TL+ GY+R
Sbjct: 123 RAEDAARAFGEMRERNALSWCSLLDAYVASDDLRLAQELFDEMPNRNNVAWNTLLMGYSR 182

Query: 295 NGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIV 354
           +G     L LF +M +  +  +  T    + AC  + +   G  +H  ++++ + +   V
Sbjct: 183 SGNANHCLLLFNKMRMAGLTCDDATLCILVDACTELANPSAGSAIHKIVVQSGWNAMAEV 242

Query: 355 MSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSS 414
            +SLI +Y+K   L+D  ++F+  +  +  + WN++I A  + G  E+A  LF  +  ++
Sbjct: 243 SNSLISLYTKFSLLDDAVRIFESME-VQTIVSWNSLIDAYMKLGCVEKATSLFGSVPETN 301

Query: 415 VKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAG 469
           V    I+   ++     +GL  E L  F  M     I P+      ++   A A 
Sbjct: 302 V----ISWTAMIGGLARNGLADEALILFVEMLAHEHIHPDDFTFGAVLHACATAA 352



 Score = 72.4 bits (176), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 50/216 (23%), Positives = 98/216 (45%), Gaps = 5/216 (2%)

Query: 215 GFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLF 274
           G  + +V ++S + +  + G+ + AR +FD    RD + W  M++ YA+ G    A  LF
Sbjct: 6   GPFAGLVAATSRIASLGRAGDAASARAVFDAMPRRDAVAWNAMLTAYARAGQPRDALALF 65

Query: 275 NEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLK 334
           +  P  +  S T  ++            +L  R++ + +R      +S +   A     +
Sbjct: 66  SRAPAPDAFSLTAALSAAAALRSPTAGAQLHARLLRVGLRALLPVGNSLISMYAKCARAE 125

Query: 335 HGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISAL 394
              +  G +       N +   SL+D Y     L   +++FD   N+ N++ WNT++   
Sbjct: 126 DAARAFGEM----RERNALSWCSLLDAYVASDDLRLAQELFDEMPNR-NNVAWNTLLMGY 180

Query: 395 TQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACT 430
           ++ G     + LF+ M  + +  D  TL ++++ACT
Sbjct: 181 SRSGNANHCLLLFNKMRMAGLTCDDATLCILVDACT 216



 Score = 68.6 bits (166), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 43/141 (30%), Positives = 70/141 (49%), Gaps = 5/141 (3%)

Query: 40  LDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYF 99
           +++LA   I     T   +L  CA + SL  G+ VH  +          +++N LI MY 
Sbjct: 326 VEMLAHEHIHPDDFTFGAVLHACATAASLASGRMVHCRV-FQSGFVSYLYVANSLIDMYA 384

Query: 100 KCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDV----VSWNT 155
           KCG       VF  I  K+L S+N ML G+A  G+   A  ++D+M   DV    V++  
Sbjct: 385 KCGDLEGGTNVFSTIVNKDLVSWNTMLFGFAINGLPNEALVVYDSMKSHDVCPDEVTFTG 444

Query: 156 MIIGYAKSGAVEEGLKFYKVL 176
           ++   + SG +E G  F++++
Sbjct: 445 LLTACSHSGLLEHGKTFFELM 465


>gi|296082168|emb|CBI21173.3| unnamed protein product [Vitis vinifera]
          Length = 654

 Score =  307 bits (786), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 173/558 (31%), Positives = 288/558 (51%), Gaps = 78/558 (13%)

Query: 118 NLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLR 177
           ++++ NN++SGYA  G ++ A  +F   ++RD VSWNTMI G+   G  E  L+F K ++
Sbjct: 33  SIYTANNIISGYAKCGEIRIASKMFGETSQRDAVSWNTMIAGFVNLGNFETALEFLKSMK 92

Query: 178 RFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSI----------- 226
           R+  + + +SF  IL     +  +++ +QVH  ++  G+  NV   S++           
Sbjct: 93  RYGFAVDGYSFGSILKGVACVGYVEVGQQVHSMMVKMGYEGNVFAGSALLDMYAKCERVE 152

Query: 227 --------------------VDAYAKCGELSDARRLFD-------ETD------------ 247
                               +  YA+ G+   A  L D       E D            
Sbjct: 153 DAFEVFKSINIRNSVTWNALISGYAQVGDRGTAFWLLDCMELEGVEIDDGTFAPLLTLLD 212

Query: 248 --------------------ARDVLTWTTMVSGYAKLGDMESASKLFN---EMPEKNPVS 284
                               A D      +++ Y++ G +E A ++F+   E  + + VS
Sbjct: 213 DPDLHKLTTQVHAKIVKHGLASDTTVCNAIITAYSECGSIEDAERVFDGAIETRDLDHVS 272

Query: 285 WTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLI 344
           W +++ G++++GL + AL+ F  M    +  + + FS+ L +C+ + +L+ G+QVH  ++
Sbjct: 273 WNSILTGFSQSGLSEDALKFFENMRSQYVVIDHYAFSAVLRSCSDLATLQLGQQVHVLVL 332

Query: 345 RTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAI 404
           ++ F  N  V SSLI MYSKCG + D R+ FD T  K++S+ WN++I    QHG  + A+
Sbjct: 333 KSGFEPNGFVASSLIFMYSKCGVIEDARKSFDATP-KDSSIAWNSLIFGYAQHGRGKIAL 391

Query: 405 RLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIEL 464
            LF  M    VK D IT   +L AC+H GLV+EG ++ +SM  D GI P  EH+AC+I+L
Sbjct: 392 DLFFLMKDRRVKLDHITFVAVLTACSHIGLVEEGWSFLKSMESDYGIPPRMEHYACMIDL 451

Query: 465 LAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATH 524
           L +AG  D+    +E MP+E D+ +W  L G CR  G+I++  +V   L++  P+   T+
Sbjct: 452 LGRAGRLDEAKALIEAMPFEPDAMVWKTLLGACRTCGDIELASQVASHLLELEPEEHCTY 511

Query: 525 GLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLY 584
            LLSS++  L +      +++L+ ER  KK    SWIE++N+V +F+  D  HP  + +Y
Sbjct: 512 VLLSSMFGHLRRWNEKASIKRLMKERGVKKVPGWSWIEVKNEVRSFNAEDRSHPNCEEIY 571

Query: 585 SVLEQLAGQMGEDAPSLD 602
             L    G++ E+   LD
Sbjct: 572 LRL----GELMEEIRRLD 585



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 103/432 (23%), Positives = 185/432 (42%), Gaps = 71/432 (16%)

Query: 78  LKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKH 137
           L +    T + + +N++IS Y KCG    A K+F +   ++  S+N M++G+ NLG    
Sbjct: 24  LAIKSGTTASIYTANNIISGYAKCGEIRIASKMFGETSQRDAVSWNTMIAGFVNLGNF-- 81

Query: 138 ARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVK 197
                                        E  L+F K ++R+  + + +SF  IL     
Sbjct: 82  -----------------------------ETALEFLKSMKRYGFAVDGYSFGSILKGVAC 112

Query: 198 LEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTM 257
           +  +++ +QVH  ++  G+  NV   S+++D YAKC  + DA  +F   + R+ +TW  +
Sbjct: 113 VGYVEVGQQVHSMMVKMGYEGNVFAGSALLDMYAKCERVEDAFEVFKSINIRNSVTWNAL 172

Query: 258 VSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQ 317
           +SGYA++GD  +A  L + M  +                                +  + 
Sbjct: 173 ISGYAQVGDRGTAFWLLDCMELEG-------------------------------VEIDD 201

Query: 318 HTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFD- 376
            TF+  L         K   QVH  +++    S+T V +++I  YS+CG + D  +VFD 
Sbjct: 202 GTFAPLLTLLDDPDLHKLTTQVHAKIVKHGLASDTTVCNAIITAYSECGSIEDAERVFDG 261

Query: 377 -LTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLV 435
            +     + + WN++++  +Q G  E A++ F +M    V  D    + +L +C+    +
Sbjct: 262 AIETRDLDHVSWNSILTGFSQSGLSEDALKFFENMRSQYVVIDHYAFSAVLRSCSDLATL 321

Query: 436 QEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHG 495
           Q G      +    G  PN    + LI + ++ G  +      +  P +  S  WN+L  
Sbjct: 322 QLG-QQVHVLVLKSGFEPNGFVASSLIFMYSKCGVIEDARKSFDATP-KDSSIAWNSL-- 377

Query: 496 VCRIHGNIDMGR 507
              I G    GR
Sbjct: 378 ---IFGYAQHGR 386



 Score =  119 bits (297), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 105/431 (24%), Positives = 194/431 (45%), Gaps = 83/431 (19%)

Query: 8   RGIN-RKNLPNNCLIQSFLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESK 66
           + IN R ++  N LI  +  +  +G    A   LD +   G+ +   T A +L    +  
Sbjct: 159 KSINIRNSVTWNALISGYAQVGDRGT---AFWLLDCMELEGVEIDDGTFAPLLTLLDDPD 215

Query: 67  SLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFD-KIPVKNL--FSYN 123
             KL  +VH  +      + TT + N +I+ Y +CGS  DA +VFD  I  ++L   S+N
Sbjct: 216 LHKLTTQVHAKIVKHGLASDTT-VCNAIITAYSECGSIEDAERVFDGAIETRDLDHVSWN 274

Query: 124 NMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISC 183
           ++L+G++  G+ + A   F+NM  + VV                                
Sbjct: 275 SILTGFSQSGLSEDALKFFENMRSQYVV-------------------------------I 303

Query: 184 NEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLF 243
           + ++F+ +L  C  L  L+L +QVH  VL +GF  N  ++SS++  Y+KCG + DAR+ F
Sbjct: 304 DHYAFSAVLRSCSDLATLQLGQQVHVLVLKSGFEPNGFVASSLIFMYSKCGVIEDARKSF 363

Query: 244 DETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALE 303
           D T     + W +++ GYA+                               +G G+ AL+
Sbjct: 364 DATPKDSSIAWNSLIFGYAQ-------------------------------HGRGKIALD 392

Query: 304 LFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIV------MSS 357
           LF  M   R++ +  TF + L AC+ I     G    G+    +  S+  +       + 
Sbjct: 393 LFFLMKDRRVKLDHITFVAVLTACSHI-----GLVEEGWSFLKSMESDYGIPPRMEHYAC 447

Query: 358 LIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKP 417
           +ID+  + G L++ + + +    + ++M+W T++ A    G  E A ++   ++   ++P
Sbjct: 448 MIDLLGRAGRLDEAKALIEAMPFEPDAMVWKTLLGACRTCGDIELASQVASHLLE--LEP 505

Query: 418 DKITLAVILNA 428
           ++    V+L++
Sbjct: 506 EEHCTYVLLSS 516



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 66/244 (27%), Positives = 111/244 (45%), Gaps = 43/244 (17%)

Query: 208 HGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDM 267
           H   + +G  +++  +++I+  YAKCGE+  A ++F ET  RD ++W TM++G+  LG+ 
Sbjct: 22  HCLAIKSGTTASIYTANNIISGYAKCGEIRIASKMFGETSQRDAVSWNTMIAGFVNLGNF 81

Query: 268 ESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCAC 327
           E+A +    M             G+  +G                     ++F S L   
Sbjct: 82  ETALEFLKSMKRY----------GFAVDG---------------------YSFGSILKGV 110

Query: 328 ASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLW 387
           A +  ++ G+QVH  +++  +  N    S+L+DMY+KC  + D  +VF  + N  NS+ W
Sbjct: 111 ACVGYVEVGQQVHSMMVKMGYEGNVFAGSALLDMYAKCERVEDAFEVFK-SINIRNSVTW 169

Query: 388 NTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVI-----------LNACTHSGLVQ 436
           N +IS   Q G    A  L   M    V+ D  T A +           L    H+ +V+
Sbjct: 170 NALISGYAQVGDRGTAFWLLDCMELEGVEIDDGTFAPLLTLLDDPDLHKLTTQVHAKIVK 229

Query: 437 EGLT 440
            GL 
Sbjct: 230 HGLA 233



 Score = 47.0 bits (110), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 38/166 (22%), Positives = 69/166 (41%), Gaps = 3/166 (1%)

Query: 328 ASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLW 387
           +S  +L      H   I++   ++    +++I  Y+KCG +    ++F  T  + +++ W
Sbjct: 10  SSFTALYRASVNHCLAIKSGTTASIYTANNIISGYAKCGEIRIASKMFGETSQR-DAVSW 68

Query: 388 NTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTH 447
           NTMI+     G  E A+     M R     D  +   IL      G V+ G     SM  
Sbjct: 69  NTMIAGFVNLGNFETALEFLKSMKRYGFAVDGYSFGSILKGVACVGYVEVG-QQVHSMMV 127

Query: 448 DLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNAL 493
            +G   N    + L+++ A+    +      + +    +S  WNAL
Sbjct: 128 KMGYEGNVFAGSALLDMYAKCERVEDAFEVFKSINI-RNSVTWNAL 172


>gi|357468161|ref|XP_003604365.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355505420|gb|AES86562.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 874

 Score =  307 bits (786), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 152/489 (31%), Positives = 280/489 (57%), Gaps = 4/489 (0%)

Query: 118 NLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLR 177
           NLF     +  ++  G++ +AR +FD     +VV+WN ++ GY +    EE  + +  + 
Sbjct: 170 NLFVQKGFIHLFSLCGLVNYARKIFDMGDGWEVVTWNVVLSGYNRFKRYEESKRLFIEME 229

Query: 178 RFS--ISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLS-NVVISSSIVDAYAKCG 234
           +    +S N  +   +L+ C KL++L   + ++ + +  G +  N+++ ++++D +A CG
Sbjct: 230 KKCECVSPNSVTLVLMLSACSKLKDLVGGKCIYNKYIKEGIVEPNLILENALIDMFASCG 289

Query: 235 ELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTR 294
           E+  AR +FDE   RDV++WT++V+G+A    ++ A K F++MPE++ VSWT +I GY R
Sbjct: 290 EMDAARGVFDEMKTRDVISWTSIVTGFANTCRIDLARKYFDQMPERDYVSWTAMIDGYLR 349

Query: 295 NGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIV 354
               ++ L LF  M +  ++P++ T  S L ACA + +L+ G+    ++ +   +++T +
Sbjct: 350 MNRFKEVLTLFRDMQMSNVKPDEFTMVSILTACAHLGALELGEWAKTYIDKNKIKNDTFI 409

Query: 355 MSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSS 414
            ++LIDMY KCG +   +++F+    K++   W  MI  L  +G+ E+A+ +F  M+ +S
Sbjct: 410 GNALIDMYFKCGNVEKAKKIFNEM-QKKDKFTWTAMIVGLANNGHGEEALTMFSYMLEAS 468

Query: 415 VKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQL 474
           V PD+IT   ++ ACTH GLV +G  +F +M    GI PN  H+ C+++LL +AG   + 
Sbjct: 469 VTPDEITYIGVMCACTHVGLVAKGKHFFSNMAVQHGIKPNLTHYGCMVDLLGRAGHLKEA 528

Query: 475 MNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSAL 534
           +  +  MP + +S +W +L G CR+H N+ +     +++++  P++ A + LL +IY+A 
Sbjct: 529 LEVIMNMPVKPNSIVWGSLLGACRVHKNVQLAEMAANEILELEPENGAVYVLLCNIYAAC 588

Query: 535 GKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQM 594
            K + +  VR+++ ER  KK    S +E+   V+ F   D  HP    +Y+ LE +   +
Sbjct: 589 KKWKNLHNVRKMMMERGIKKIPGCSLMEMNGIVYEFVAGDKSHPQSKEIYAKLENMKQDL 648

Query: 595 GEDAPSLDA 603
                S D 
Sbjct: 649 SNAGYSPDT 657



 Score =  159 bits (401), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 92/345 (26%), Positives = 162/345 (46%), Gaps = 32/345 (9%)

Query: 54  TLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDK 113
           TL  +L  C++ K L  GK ++          P   L N LI M+  CG    AR VFD+
Sbjct: 241 TLVLMLSACSKLKDLVGGKCIYNKYIKEGIVEPNLILENALIDMFASCGEMDAARGVFDE 300

Query: 114 IPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFY 173
           +  +++ S+ ++++G+AN   +  AR  FD M ERD VSW  MI GY +    +E L  +
Sbjct: 301 MKTRDVISWTSIVTGFANTCRIDLARKYFDQMPERDYVSWTAMIDGYLRMNRFKEVLTLF 360

Query: 174 KVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKC 233
           + ++  ++  +EF+   ILT C  L  L+L       +      ++  I ++++D Y KC
Sbjct: 361 RDMQMSNVKPDEFTMVSILTACAHLGALELGEWAKTYIDKNKIKNDTFIGNALIDMYFKC 420

Query: 234 GELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYT 293
           G +  A+++F+E   +D  TWT M+ G A                               
Sbjct: 421 GNVEKAKKIFNEMQKKDKFTWTAMIVGLA------------------------------- 449

Query: 294 RNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFL-IRTNFRSNT 352
            NG G++AL +F+ M+   + P++ T+   +CAC  +  +  GK     + ++   + N 
Sbjct: 450 NNGHGEEALTMFSYMLEASVTPDEITYIGVMCACTHVGLVAKGKHFFSNMAVQHGIKPNL 509

Query: 353 IVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQH 397
                ++D+  + G L +  +V      K NS++W +++ A   H
Sbjct: 510 THYGCMVDLLGRAGHLKEALEVIMNMPVKPNSIVWGSLLGACRVH 554



 Score =  136 bits (342), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 101/397 (25%), Positives = 174/397 (43%), Gaps = 71/397 (17%)

Query: 133 GMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGIL 192
           G + +AR +FD + +  V  WNTMI GY++    E G+  YK++   +I  + F+F  +L
Sbjct: 83  GDVYYARKVFDEIPQPSVFIWNTMIKGYSRINCSESGVSLYKLMLVHNIKPDGFTFPFLL 142

Query: 193 TICVKLEELKLTRQVHGQVLVTGFL-SNVVISSSIVDAYAKCGELSDARRLFDETDARDV 251
               K   LK  + +    ++ GFL SN+ +    +  ++ CG ++ AR++FD  D  +V
Sbjct: 143 KGFTKDMALKYGKVLLNHAVIHGFLDSNLFVQKGFIHLFSLCGLVNYARKIFDMGDGWEV 202

Query: 252 LTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMIL 311
           +TW  ++SGY +    E + +LF EM +K                               
Sbjct: 203 VTWNVVLSGYNRFKRYEESKRLFIEMEKKCEC---------------------------- 234

Query: 312 RIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNF-RSNTIVMSSLIDMYSKCGCLND 370
            + PN  T    L AC+ +  L  GK ++   I+      N I+ ++LIDM++ CG ++ 
Sbjct: 235 -VSPNSVTLVLMLSACSKLKDLVGGKCIYNKYIKEGIVEPNLILENALIDMFASCGEMDA 293

Query: 371 GRQVFDLTDNKE------------------------------NSMLWNTMISALTQHGYD 400
            R VFD    ++                              + + W  MI    +    
Sbjct: 294 ARGVFDEMKTRDVISWTSIVTGFANTCRIDLARKYFDQMPERDYVSWTAMIDGYLRMNRF 353

Query: 401 EQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHA- 459
           ++ + LF DM  S+VKPD+ T+  IL AC H G ++ G   +     D   I N      
Sbjct: 354 KEVLTLFRDMQMSNVKPDEFTMVSILTACAHLGALELG--EWAKTYIDKNKIKNDTFIGN 411

Query: 460 CLIELLAQAGC---SDQLMNQLEKMPYEHDSYLWNAL 493
            LI++  + G    + ++ N+++K     D + W A+
Sbjct: 412 ALIDMYFKCGNVEKAKKIFNEMQK----KDKFTWTAM 444



 Score =  112 bits (281), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 75/265 (28%), Positives = 129/265 (48%), Gaps = 23/265 (8%)

Query: 265 GDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCL 324
           GD+  A K+F+E+P+ +   W T+I GY+R    +  + L+  M++  I+P+  TF   L
Sbjct: 83  GDVYYARKVFDEIPQPSVFIWNTMIKGYSRINCSESGVSLYKLMLVHNIKPDGFTFPFLL 142

Query: 325 CACASIVSLKHGK------QVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLT 378
                 ++LK+GK       +HGFL      SN  V    I ++S CG +N  R++FD+ 
Sbjct: 143 KGFTKDMALKYGKVLLNHAVIHGFL-----DSNLFVQKGFIHLFSLCGLVNYARKIFDMG 197

Query: 379 DNKENSMLWNTMISALTQHGYDEQAIRLFHDMVR--SSVKPDKITLAVILNACTHSGLVQ 436
           D  E  + WN ++S   +    E++ RLF +M +    V P+ +TL ++L+AC+    + 
Sbjct: 198 DGWE-VVTWNVVLSGYNRFKRYEESKRLFIEMEKKCECVSPNSVTLVLMLSACSKLKDLV 256

Query: 437 EGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNAL--- 493
            G   +     +  + PN      LI++ A  G  D      ++M    D   W ++   
Sbjct: 257 GGKCIYNKYIKEGIVEPNLILENALIDMFASCGEMDAARGVFDEMK-TRDVISWTSIVTG 315

Query: 494 -HGVCRIHGNIDMGRKVVDQLIDQN 517
               CR    ID+ RK  DQ+ +++
Sbjct: 316 FANTCR----IDLARKYFDQMPERD 336


>gi|224141809|ref|XP_002324255.1| predicted protein [Populus trichocarpa]
 gi|222865689|gb|EEF02820.1| predicted protein [Populus trichocarpa]
          Length = 547

 Score =  306 bits (785), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 165/481 (34%), Positives = 260/481 (54%), Gaps = 16/481 (3%)

Query: 128 GYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFS------- 180
           GYA+L        LF  + E +   +N MI  +  +      + FYK + R         
Sbjct: 63  GYASL--------LFKQVKEPNGYLYNAMIRAHTHNKVYALAILFYKEMLRLKDPESENP 114

Query: 181 ISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDAR 240
           I  + F+F  ++  C  L    L +QVH  +   G  SN+ + ++++D Y KC  L DA 
Sbjct: 115 IFPDRFTFPFVIKSCSGLVCYNLGKQVHAHLCKFGPKSNITMENALIDMYTKCASLLDAH 174

Query: 241 RLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQK 300
           ++FD    RD ++W +++SG+  +G M  A  LF+ MP +  VSWT +I+GYTR G    
Sbjct: 175 KVFDGMVERDAISWNSIISGHVGVGQMRKAGALFDLMPYRTIVSWTAMISGYTRLGSYAD 234

Query: 301 ALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLID 360
           AL +F +M I+ + P++ +  S L ACA + +L+ GK +H +  R      T + ++L++
Sbjct: 235 ALYVFRQMQIVGVEPDEISIISVLPACAQLGALEVGKWIHMYCDRNGLLRKTSICNALME 294

Query: 361 MYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKI 420
           MYSKCGC+    Q+FD   +K + + W+TMI  L  HG   +AI LF  M ++ ++P+ I
Sbjct: 295 MYSKCGCIGQAYQLFDQM-SKGDVISWSTMIGGLANHGKAREAIELFKRMKKAKIEPNGI 353

Query: 421 TLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEK 480
           T   +L+AC H+G   EGL YF+SM+ D  I P  EH+ CL+++L +AG   Q ++ +EK
Sbjct: 354 TFLGLLSACAHAGFWNEGLAYFDSMSKDYHIEPEVEHYGCLVDILGRAGRLSQALDVIEK 413

Query: 481 MPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLV 540
           MP + DS +W +L   CR H N+D+    ++ L +  P  +  + LLS+IY+ L K   V
Sbjct: 414 MPMKPDSKIWGSLLSSCRTHSNLDIAIIAMEHLEELEPDDTGNYVLLSNIYADLAKWDGV 473

Query: 541 EKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQMGEDAPS 600
            ++R+LI  +  KK    S I+I N V  F   D   P    ++ +LE L        P 
Sbjct: 474 SRMRKLIKSKSMKKTPGSSLIDINNVVQEFVSWDDSKPFSRDIFWLLELLTSHQDTTDPH 533

Query: 601 L 601
           L
Sbjct: 534 L 534



 Score =  165 bits (417), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 105/375 (28%), Positives = 177/375 (47%), Gaps = 35/375 (9%)

Query: 54  TLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDK 113
           T  F+++ C+      LGK+VH HL     K+  T + N LI MY KC S +DA KVFD 
Sbjct: 121 TFPFVIKSCSGLVCYNLGKQVHAHLCKFGPKSNIT-MENALIDMYTKCASLLDAHKVFDG 179

Query: 114 IPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFY 173
           +  ++  S+N+++SG+  +G M+ A  LFD M  R +VSW  MI GY + G+  + L  +
Sbjct: 180 MVERDAISWNSIISGHVGVGQMRKAGALFDLMPYRTIVSWTAMISGYTRLGSYADALYVF 239

Query: 174 KVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKC 233
           + ++   +  +E S   +L  C +L  L++ + +H      G L    I +++++ Y+KC
Sbjct: 240 RQMQIVGVEPDEISIISVLPACAQLGALEVGKWIHMYCDRNGLLRKTSICNALMEMYSKC 299

Query: 234 GELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYT 293
           G +  A +LFD+    DV++W+TM+ G A                               
Sbjct: 300 GCIGQAYQLFDQMSKGDVISWSTMIGGLA------------------------------- 328

Query: 294 RNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRT-NFRSNT 352
            +G  ++A+ELF RM   +I PN  TF   L ACA       G      + +  +     
Sbjct: 329 NHGKAREAIELFKRMKKAKIEPNGITFLGLLSACAHAGFWNEGLAYFDSMSKDYHIEPEV 388

Query: 353 IVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVR 412
                L+D+  + G L+    V +    K +S +W +++S+   H   + AI     +  
Sbjct: 389 EHYGCLVDILGRAGRLSQALDVIEKMPMKPDSKIWGSLLSSCRTHSNLDIAIIAMEHL-- 446

Query: 413 SSVKPDKITLAVILN 427
             ++PD     V+L+
Sbjct: 447 EELEPDDTGNYVLLS 461



 Score = 58.9 bits (141), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 43/168 (25%), Positives = 84/168 (50%), Gaps = 13/168 (7%)

Query: 21  IQSFLSLISK----GQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHL 76
           I S+ ++IS     G  ++A+     +   G+     ++  +L  CA+  +L++GK +H+
Sbjct: 216 IVSWTAMISGYTRLGSYADALYVFRQMQIVGVEPDEISIISVLPACAQLGALEVGKWIHM 275

Query: 77  HLKLTQ--RKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGM 134
           +       RKT    + N L+ MY KCG    A ++FD++   ++ S++ M+ G AN G 
Sbjct: 276 YCDRNGLLRKTS---ICNALMEMYSKCGCIGQAYQLFDQMSKGDVISWSTMIGGLANHGK 332

Query: 135 MKHARNLFDNMA----ERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRR 178
            + A  LF  M     E + +++  ++   A +G   EGL ++  + +
Sbjct: 333 AREAIELFKRMKKAKIEPNGITFLGLLSACAHAGFWNEGLAYFDSMSK 380



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 37/137 (27%), Positives = 67/137 (48%), Gaps = 13/137 (9%)

Query: 306 TRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKC 365
           TR+  L+IR  ++ F   L  C +IV L   K +H  +I+ +   ++ +++ ++D+  K 
Sbjct: 3   TRIGALKIRELENFFVPILQNCKNIVEL---KSIHAHVIKYSLSQSSFLVTKMVDVCDKT 59

Query: 366 GCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVR-------SSVKPD 418
             L     +F     + N  L+N MI A T +     AI  + +M+R       + + PD
Sbjct: 60  EDLGYASLLFKQV-KEPNGYLYNAMIRAHTHNKVYALAILFYKEMLRLKDPESENPIFPD 118

Query: 419 KITLAVILNACTHSGLV 435
           + T   ++ +C  SGLV
Sbjct: 119 RFTFPFVIKSC--SGLV 133


>gi|218546768|sp|Q8S9M4.2|PP198_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g41080
          Length = 650

 Score =  306 bits (785), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 178/572 (31%), Positives = 299/572 (52%), Gaps = 42/572 (7%)

Query: 26  SLISKGQLSEAISS--LDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQR 83
           +L SKG L EA     L++     +  P       +Q C   +SL  GK++H  L +   
Sbjct: 22  TLCSKGNLREAFQRFRLNIFTNTSLFTP------FIQSCTTRQSLPSGKQLHC-LLVVSG 74

Query: 84  KTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFD 143
            +   F+ NHL+SMY K G    A  V+ ++  KN  S N +++GY   G + +AR +FD
Sbjct: 75  FSSDKFICNHLMSMYSKLGDFPSAVAVYGRMRKKNYMSSNILINGYVRAGDLVNARKVFD 134

Query: 144 NMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKL 203
            M +R + +WN MI G  +    EEGL  ++ +     S +E++   + +    L  + +
Sbjct: 135 EMPDRKLTTWNAMIAGLIQFEFNEEGLSLFREMHGLGFSPDEYTLGSVFSGSAGLRSVSI 194

Query: 204 TRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAK 263
            +Q+HG  +  G   ++V++SS+   Y + G+L D                         
Sbjct: 195 GQQIHGYTIKYGLELDLVVNSSLAHMYMRNGKLQD------------------------- 229

Query: 264 LGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSC 323
            G++     +   MP +N V+W TLI G  +NG  +  L L+  M I   RPN+ TF + 
Sbjct: 230 -GEI-----VIRSMPVRNLVAWNTLIMGNAQNGCPETVLYLYKMMKISGCRPNKITFVTV 283

Query: 324 LCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKEN 383
           L +C+ +     G+Q+H   I+    S   V+SSLI MYSKCGCL D  + F   ++ E+
Sbjct: 284 LSSCSDLAIRGQGQQIHAEAIKIGASSVVAVVSSLISMYSKCGCLGDAAKAFSERED-ED 342

Query: 384 SMLWNTMISALTQHGYDEQAIRLFHDMV-RSSVKPDKITLAVILNACTHSGLVQEGLTYF 442
            ++W++MISA   HG  ++AI LF+ M  +++++ +++    +L AC+HSGL  +GL  F
Sbjct: 343 EVMWSSMISAYGFHGQGDEAIELFNTMAEQTNMEINEVAFLNLLYACSHSGLKDKGLELF 402

Query: 443 ESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGN 502
           + M    G  P  +H+ C+++LL +AGC DQ    +  MP + D  +W  L   C IH N
Sbjct: 403 DMMVEKYGFKPGLKHYTCVVDLLGRAGCLDQAEAIIRSMPIKTDIVIWKTLLSACNIHKN 462

Query: 503 IDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIE 562
            +M ++V  +++  +P  SA + LL++++++  + R V +VR+ + ++  KKE  ISW E
Sbjct: 463 AEMAQRVFKEILQIDPNDSACYVLLANVHASAKRWRDVSEVRKSMRDKNVKKEAGISWFE 522

Query: 563 IENKVHAFSVSDSLHPMRDVLYSVLEQLAGQM 594
            + +VH F + D        +YS L++L  +M
Sbjct: 523 HKGEVHQFKMGDRSQSKSKEIYSYLKELTLEM 554


>gi|15225375|ref|NP_179644.1| mitochondrial editing factor 21 [Arabidopsis thaliana]
 gi|75337271|sp|Q9SIL5.1|PP165_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g20540
 gi|4586036|gb|AAD25654.1| unknown protein [Arabidopsis thaliana]
 gi|67633530|gb|AAY78689.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|330251931|gb|AEC07025.1| mitochondrial editing factor 21 [Arabidopsis thaliana]
          Length = 534

 Score =  306 bits (785), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 174/514 (33%), Positives = 280/514 (54%), Gaps = 6/514 (1%)

Query: 90  LSNHLISMYFKCGSDVDARKVFDKIPVKNL----FSYNNMLSGYANLGMMKHARNLFDNM 145
           + N+ I    +  S  + +K+   I +  L    F    M+     +  M +A  LF+ +
Sbjct: 9   VENYFIPFLQRVKSRNEWKKINASIIIHGLSQSSFMVTKMVDFCDKIEDMDYATRLFNQV 68

Query: 146 AERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISC-NEFSFAGILTICVKLEELKLT 204
           +  +V  +N++I  Y  +    + ++ YK L R S    + F+F  +   C  L    L 
Sbjct: 69  SNPNVFLYNSIIRAYTHNSLYCDVIRIYKQLLRKSFELPDRFTFPFMFKSCASLGSCYLG 128

Query: 205 RQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKL 264
           +QVHG +   G   +VV  ++++D Y K  +L DA ++FDE   RDV++W +++SGYA+L
Sbjct: 129 KQVHGHLCKFGPRFHVVTENALIDMYMKFDDLVDAHKVFDEMYERDVISWNSLLSGYARL 188

Query: 265 GDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCL 324
           G M+ A  LF+ M +K  VSWT +I+GYT  G   +A++ F  M +  I P++ +  S L
Sbjct: 189 GQMKKAKGLFHLMLDKTIVSWTAMISGYTGIGCYVEAMDFFREMQLAGIEPDEISLISVL 248

Query: 325 CACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENS 384
            +CA + SL+ GK +H +  R  F   T V ++LI+MYSKCG ++   Q+F   + K+  
Sbjct: 249 PSCAQLGSLELGKWIHLYAERRGFLKQTGVCNALIEMYSKCGVISQAIQLFGQMEGKD-V 307

Query: 385 MLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFES 444
           + W+TMIS    HG    AI  F++M R+ VKP+ IT   +L+AC+H G+ QEGL YF+ 
Sbjct: 308 ISWSTMISGYAYHGNAHGAIETFNEMQRAKVKPNGITFLGLLSACSHVGMWQEGLRYFDM 367

Query: 445 MTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNID 504
           M  D  I P  EH+ CLI++LA+AG  ++ +   + MP + DS +W +L   CR  GN+D
Sbjct: 368 MRQDYQIEPKIEHYGCLIDVLARAGKLERAVEITKTMPMKPDSKIWGSLLSSCRTPGNLD 427

Query: 505 MGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIE 564
           +    +D L++  P+    + LL++IY+ LGK   V ++R++I     KK    S IE+ 
Sbjct: 428 VALVAMDHLVELEPEDMGNYVLLANIYADLGKWEDVSRLRKMIRNENMKKTPGGSLIEVN 487

Query: 565 NKVHAFSVSDSLHPMRDVLYSVLEQLAGQMGEDA 598
           N V  F   D+  P    +  VL+       +D 
Sbjct: 488 NIVQEFVSGDNSKPFWTEISIVLQLFTSHQDQDV 521



 Score =  185 bits (469), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 120/400 (30%), Positives = 199/400 (49%), Gaps = 39/400 (9%)

Query: 4   NFSPRGINRKNLPNNCLIQSFLSLISKGQL-SEAISSLDLLAQRGIRLPAE-TLAFILQQ 61
           +++ R  N+ + PN  L  S +   +   L  + I     L ++   LP   T  F+ + 
Sbjct: 59  DYATRLFNQVSNPNVFLYNSIIRAYTHNSLYCDVIRIYKQLLRKSFELPDRFTFPFMFKS 118

Query: 62  CAESKSLKLGKRVHLHL-KLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLF 120
           CA   S  LGK+VH HL K   R    T   N LI MY K    VDA KVFD++  +++ 
Sbjct: 119 CASLGSCYLGKQVHGHLCKFGPRFHVVT--ENALIDMYMKFDDLVDAHKVFDEMYERDVI 176

Query: 121 SYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFS 180
           S+N++LSGYA LG MK A+ LF  M ++ +VSW  MI GY   G   E + F++ ++   
Sbjct: 177 SWNSLLSGYARLGQMKKAKGLFHLMLDKTIVSWTAMISGYTGIGCYVEAMDFFREMQLAG 236

Query: 181 ISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDAR 240
           I  +E S   +L  C +L  L+L + +H      GFL    + +++++ Y+KCG +S A 
Sbjct: 237 IEPDEISLISVLPSCAQLGSLELGKWIHLYAERRGFLKQTGVCNALIEMYSKCGVISQAI 296

Query: 241 RLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQK 300
           +LF + + +DV++W+TM+SGYA  G+   A + FNEM                     Q+
Sbjct: 297 QLFGQMEGKDVISWSTMISGYAYHGNAHGAIETFNEM---------------------QR 335

Query: 301 ALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIV--MSSL 358
           A          +++PN  TF   L AC+ +   + G +    ++R +++    +     L
Sbjct: 336 A----------KVKPNGITFLGLLSACSHVGMWQEGLRYFD-MMRQDYQIEPKIEHYGCL 384

Query: 359 IDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHG 398
           ID+ ++ G L    ++      K +S +W +++S+    G
Sbjct: 385 IDVLARAGKLERAVEITKTMPMKPDSKIWGSLLSSCRTPG 424


>gi|359488315|ref|XP_002278668.2| PREDICTED: pentatricopeptide repeat-containing protein
           At3g02330-like [Vitis vinifera]
          Length = 877

 Score =  306 bits (785), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 176/622 (28%), Positives = 309/622 (49%), Gaps = 103/622 (16%)

Query: 43  LAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCG 102
           + + G+ +   T A + + CA   +L+LG ++H H   T   T    +    + MY KC 
Sbjct: 266 MQKAGVGVSQSTFASVFRSCAGLSALRLGSQLHGHALKTDFGTDVV-IGTATLDMYMKCN 324

Query: 103 SDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAK 162
           +  DA+K+F+ +P  NL SYN                                +I+GYA+
Sbjct: 325 NLSDAQKLFNSLPNHNLQSYN-------------------------------AIIVGYAR 353

Query: 163 SGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVI 222
           S    E L  +++L++  +  +E S +G    C  ++      QVHG  + +   SN+ +
Sbjct: 354 SDKGIEALGMFRLLQKSGLGLDEVSLSGAFRACAVIKGDLEGLQVHGLSMKSLCQSNICV 413

Query: 223 SSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEM----- 277
           +++I+D Y KCG L +A  +F+E  +RD ++W  +++ + + G+ E    LF  M     
Sbjct: 414 ANAILDMYGKCGALVEACLVFEEMVSRDAVSWNAIIAAHEQNGNEEKTLSLFVWMLQSGM 473

Query: 278 -PE--------KNPVSWTTLIAG-------------------------YTRNGLGQKALE 303
            P+        K    W  L  G                         Y++ G+ +KA +
Sbjct: 474 EPDEFTYGSVLKACAGWQALNCGMEIHNRIIKSRLGLDSFVGIALIDMYSKCGMMEKAEK 533

Query: 304 L-------------------------------FTRMMILRIRPNQHTFSSCLCACASIVS 332
           L                               F++M+ + + P+  T+++ L  CA++V+
Sbjct: 534 LHDRLAEQTVVSWNAIISGFSLQKQSEEAQKTFSKMLEMGVDPDNFTYATILDTCANLVT 593

Query: 333 LKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMIS 392
           ++ GKQ+H  +I+   +S+  + S+L+DMYSKCG + D + +F+   N++  + WN M+ 
Sbjct: 594 VELGKQIHAQIIKKELQSDAYISSTLVDMYSKCGNMQDFQLIFEKAPNRD-FVTWNAMVC 652

Query: 393 ALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGII 452
              QHG  E+A+++F  M   +VKP+  T   +L AC H GLV++GL YF SM  + G+ 
Sbjct: 653 GYAQHGLGEEALKIFEYMQLENVKPNHATFLAVLRACGHMGLVEKGLHYFHSMLSNYGLD 712

Query: 453 PNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQ 512
           P  EH++C+++++ ++G   + +  +E MP+E D+ +W  L  +C+IHGN+++  K    
Sbjct: 713 PQLEHYSCVVDIMGRSGQVSKALELIEGMPFEADAVIWRTLLSICKIHGNVEVAEKAAYS 772

Query: 513 LIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSV 572
           ++   P+ SA + LLS+IY+  G    V K+R+++     KKE   SWIEI+++VHAF V
Sbjct: 773 ILQLEPEDSAAYVLLSNIYANAGMWNEVTKLRKMMRFNGLKKEPGCSWIEIKSEVHAFLV 832

Query: 573 SDSLHPMRDVLYSVLEQLAGQM 594
            D  HP    +Y  L+ L  +M
Sbjct: 833 GDKAHPRSKEIYENLDVLTDEM 854



 Score =  201 bits (510), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 132/454 (29%), Positives = 229/454 (50%), Gaps = 43/454 (9%)

Query: 53  ETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFD 112
           +T + I Q+C++ K+L  GK+ H  + LT+ K PT F++N LI MY KC     A KVFD
Sbjct: 43  KTFSHIFQECSDRKALCPGKQAHARMILTEFK-PTVFVTNCLIQMYIKCSDLEFAFKVFD 101

Query: 113 KIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKF 172
            +P ++  S+N ML GYA  G +  A+ LFD M ERDVVSWN++I GY  +G   + +  
Sbjct: 102 GMPQRDTVSWNAMLFGYAGRGDIGVAQKLFDAMPERDVVSWNSLISGYLHNGDHRKVIDV 161

Query: 173 YKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAK 232
           +  + R     +  +FA +L  C  LE+     Q+HG  +  GF  +VV  S+++D YAK
Sbjct: 162 FLQMGRMGTVFDRTTFAVVLKSCSSLEDHGGGIQIHGLAVKMGFDCDVVTGSALLDMYAK 221

Query: 233 CGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGY 292
           C +L  + + F     ++ ++W+ +++G  +  D+    +LF EM               
Sbjct: 222 CKKLDCSIQFFHSMPEKNWVSWSAIIAGCVQNDDLRGGLELFKEM--------------- 266

Query: 293 TRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNT 352
                 QKA           +  +Q TF+S   +CA + +L+ G Q+HG  ++T+F ++ 
Sbjct: 267 ------QKA----------GVGVSQSTFASVFRSCAGLSALRLGSQLHGHALKTDFGTDV 310

Query: 353 IVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVR 412
           ++ ++ +DMY KC  L+D +++F+   N  N   +N +I    +     +A+ +F  + +
Sbjct: 311 VIGTATLDMYMKCNNLSDAQKLFNSLPN-HNLQSYNAIIVGYARSDKGIEALGMFRLLQK 369

Query: 413 SSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHAC----LIELLAQA 468
           S +  D+++L+    AC       EGL       H L +    + + C    ++++  + 
Sbjct: 370 SGLGLDEVSLSGAFRACAVIKGDLEGLQ-----VHGLSMKSLCQSNICVANAILDMYGKC 424

Query: 469 GCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGN 502
           G   +     E+M    D+  WNA+      +GN
Sbjct: 425 GALVEACLVFEEM-VSRDAVSWNAIIAAHEQNGN 457



 Score =  156 bits (394), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 117/462 (25%), Positives = 216/462 (46%), Gaps = 66/462 (14%)

Query: 125 MLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCN 184
           +L  YA    +  +   F +M E++ VSW+ +I G  ++  +  GL+ +K +++  +  +
Sbjct: 215 LLDMYAKCKKLDCSIQFFHSMPEKNWVSWSAIIAGCVQNDDLRGGLELFKEMQKAGVGVS 274

Query: 185 EFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFD 244
           + +FA +   C  L  L+L  Q+HG  L T F ++VVI ++ +D Y KC  LSDA++LF 
Sbjct: 275 QSTFASVFRSCAGLSALRLGSQLHGHALKTDFGTDVVIGTATLDMYMKCNNLSDAQKLF- 333

Query: 245 ETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALEL 304
                                         N +P  N  S+  +I GY R+  G +AL +
Sbjct: 334 ------------------------------NSLPNHNLQSYNAIIVGYARSDKGIEALGM 363

Query: 305 FTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSK 364
           F  +    +  ++ + S    ACA I     G QVHG  +++  +SN  V ++++DMY K
Sbjct: 364 FRLLQKSGLGLDEVSLSGAFRACAVIKGDLEGLQVHGLSMKSLCQSNICVANAILDMYGK 423

Query: 365 CGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAV 424
           CG L +   VF+   +++ ++ WN +I+A  Q+G +E+ + LF  M++S ++PD+ T   
Sbjct: 424 CGALVEACLVFEEMVSRD-AVSWNAIIAAHEQNGNEEKTLSLFVWMLQSGMEPDEFTYGS 482

Query: 425 ILNACT-----------HSGLVQE--GLTYFES-----MTHDLGIIPNQEH-HACLIE-- 463
           +L AC            H+ +++   GL  F       M    G++   E  H  L E  
Sbjct: 483 VLKACAGWQALNCGMEIHNRIIKSRLGLDSFVGIALIDMYSKCGMMEKAEKLHDRLAEQT 542

Query: 464 ------------LLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVD 511
                       L  Q+  + +  +++ +M  + D++ +  +   C     +++G+++  
Sbjct: 543 VVSWNAIISGFSLQKQSEEAQKTFSKMLEMGVDPDNFTYATILDTCANLVTVELGKQIHA 602

Query: 512 QLIDQNPQSSA-THGLLSSIYSALGKGRLVEKVRQLINERQF 552
           Q+I +  QS A     L  +YS  G  +  + + +    R F
Sbjct: 603 QIIKKELQSDAYISSTLVDMYSKCGNMQDFQLIFEKAPNRDF 644



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 101/409 (24%), Positives = 183/409 (44%), Gaps = 67/409 (16%)

Query: 31  GQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFL 90
           G   + +S    + Q G+     T   +L+ CA  ++L  G  +H  + +  R    +F+
Sbjct: 456 GNEEKTLSLFVWMLQSGMEPDEFTYGSVLKACAGWQALNCGMEIHNRI-IKSRLGLDSFV 514

Query: 91  SNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDV 150
              LI MY KCG                               MM+ A  L D +AE+ V
Sbjct: 515 GIALIDMYSKCG-------------------------------MMEKAEKLHDRLAEQTV 543

Query: 151 VSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQ 210
           VSWN +I G++     EE  K +  +    +  + F++A IL  C  L  ++L +Q+H Q
Sbjct: 544 VSWNAIISGFSLQKQSEEAQKTFSKMLEMGVDPDNFTYATILDTCANLVTVELGKQIHAQ 603

Query: 211 VLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESA 270
           ++     S+  ISS++VD Y+KCG + D + +F++   RD +TW  MV GYA        
Sbjct: 604 IIKKELQSDAYISSTLVDMYSKCGNMQDFQLIFEKAPNRDFVTWNAMVCGYA-------- 655

Query: 271 SKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASI 330
                                  ++GLG++AL++F  M +  ++PN  TF + L AC  +
Sbjct: 656 -----------------------QHGLGEEALKIFEYMQLENVKPNHATFLAVLRACGHM 692

Query: 331 VSLKHG-KQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNT 389
             ++ G    H  L            S ++D+  + G ++   ++ +    + ++++W T
Sbjct: 693 GLVEKGLHYFHSMLSNYGLDPQLEHYSCVVDIMGRSGQVSKALELIEGMPFEADAVIWRT 752

Query: 390 MISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVIL-NACTHSGLVQE 437
           ++S    HG  E A +  + +++  ++P+     V+L N   ++G+  E
Sbjct: 753 LLSICKIHGNVEVAEKAAYSILQ--LEPEDSAAYVLLSNIYANAGMWNE 799


>gi|357128220|ref|XP_003565772.1| PREDICTED: putative pentatricopeptide repeat-containing protein
            At5g13230, mitochondrial-like [Brachypodium distachyon]
          Length = 1206

 Score =  306 bits (785), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 169/495 (34%), Positives = 267/495 (53%), Gaps = 37/495 (7%)

Query: 101  CGSDVDARKVFDKIPVKNLFS-----YNNMLSGYANLGMMKHARNLFDNMAERDVVSWNT 155
            C S V   K      VK L+      Y  +L  YA  G ++ AR  F+ +   DV+ W+ 
Sbjct: 644  CLSSVVLGKGIHACSVKTLYDTERHVYGALLDMYAKCGNIEDARLAFEMVTNDDVILWSL 703

Query: 156  MIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTG 215
            MI  YA+    E+  + +  + R S+S NEFS + +L  C  +  L L +Q+H   +  G
Sbjct: 704  MISRYAQCNQNEQAFELFIRMMRSSVSPNEFSLSSVLQACANMPLLDLGKQIHNHAIKIG 763

Query: 216  FLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFN 275
              S + + ++++D YAKC                                DMES+ ++F+
Sbjct: 764  HESELFVGNALIDLYAKCS-------------------------------DMESSLEIFS 792

Query: 276  EMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKH 335
             + + N VSW T+I GY+++G G+ AL +F  M    +   Q T+SS L ACAS  S+ H
Sbjct: 793  SLRDVNEVSWNTIIVGYSKSGFGEAALSVFREMRAASVPSTQVTYSSVLRACASTASINH 852

Query: 336  GKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALT 395
              QVH  + ++ F S+TIV +SLID Y+KCGC+ D R++F+ T  + + + WN +IS   
Sbjct: 853  VGQVHCLIEKSTFNSDTIVSNSLIDSYAKCGCIRDAREIFE-TLKECDLVSWNAIISGYA 911

Query: 396  QHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQ 455
             HG    A  LF  M ++S+K + IT   +L+ C  +GLV +GL+ F+SM  D GI P+ 
Sbjct: 912  VHGQAAMAQELFDMMSKNSIKANDITFVALLSVCGSTGLVSQGLSLFDSMRLDHGIEPSM 971

Query: 456  EHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLID 515
            EH+ C++ LL +AG  +  +N +  +P    + +W AL   C +H N+++GR   +++++
Sbjct: 972  EHYTCIVRLLGRAGRLNDALNFIGDIPSAPSAMVWRALLSSCIVHKNVELGRFSAEKVLE 1031

Query: 516  QNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDS 575
              PQ   T+ LLS++YSA G    V   R+ +     +KE  +SW+EI+ +VHAFSV   
Sbjct: 1032 IEPQDETTYVLLSNMYSAAGSLDQVAFFRKSMRNIGVRKEPGLSWVEIKGEVHAFSVGSE 1091

Query: 576  LHPMRDVLYSVLEQL 590
             HP   V+ ++LE L
Sbjct: 1092 DHPCMRVINAMLEWL 1106



 Score =  166 bits (420), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 95/321 (29%), Positives = 164/321 (51%), Gaps = 32/321 (9%)

Query: 118 NLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLR 177
           +LF  N +L+ Y  +G    A  +FD + ER++VS+ T++ G+A  G  EE    ++ LR
Sbjct: 464 DLFCANVLLNMYTKVGPFGSAHRVFDGLPERNMVSFVTLVQGHALRGEFEEASALFQRLR 523

Query: 178 RFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELS 237
                 N+F    +L + V ++ L L   VH      G   N  + S+++DAY+ CG +S
Sbjct: 524 WEGHEVNQFVLTTVLKLVVAMDTLGLAWGVHACACKLGHDRNAFVGSALIDAYSMCGVVS 583

Query: 238 DARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGL 297
           DAR                               ++F+ +  K+ V+WT +++ Y+ N  
Sbjct: 584 DAR-------------------------------RVFDGIVGKDAVAWTAMVSCYSENDC 612

Query: 298 GQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSS 357
            +  L++F++M +   + N    +S L A   + S+  GK +H   ++T + +   V  +
Sbjct: 613 PENTLQIFSKMRVAVSKLNPFALTSVLRAAVCLSSVVLGKGIHACSVKTLYDTERHVYGA 672

Query: 358 LIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKP 417
           L+DMY+KCG + D R  F++  N ++ +LW+ MIS   Q   +EQA  LF  M+RSSV P
Sbjct: 673 LLDMYAKCGNIEDARLAFEMVTN-DDVILWSLMISRYAQCNQNEQAFELFIRMMRSSVSP 731

Query: 418 DKITLAVILNACTHSGLVQEG 438
           ++ +L+ +L AC +  L+  G
Sbjct: 732 NEFSLSSVLQACANMPLLDLG 752



 Score =  166 bits (419), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 112/404 (27%), Positives = 186/404 (46%), Gaps = 48/404 (11%)

Query: 117 KNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVL 176
           +N F  + ++  Y+  G++  AR +FD +  +D V+W  M+  Y+++   E  L+ +  +
Sbjct: 564 RNAFVGSALIDAYSMCGVVSDARRVFDGIVGKDAVAWTAMVSCYSENDCPENTLQIFSKM 623

Query: 177 RRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGEL 236
           R      N F+   +L   V L  + L + +H   + T + +   +  +++D YAKCG +
Sbjct: 624 RVAVSKLNPFALTSVLRAAVCLSSVVLGKGIHACSVKTLYDTERHVYGALLDMYAKCGNI 683

Query: 237 SDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNG 296
            DAR  F+     DV+ W+ M+S YA+    E                            
Sbjct: 684 EDARLAFEMVTNDDVILWSLMISRYAQCNQNE---------------------------- 715

Query: 297 LGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMS 356
              +A ELF RMM   + PN+ + SS L ACA++  L  GKQ+H   I+    S   V +
Sbjct: 716 ---QAFELFIRMMRSSVSPNEFSLSSVLQACANMPLLDLGKQIHNHAIKIGHESELFVGN 772

Query: 357 SLIDMYSKCGCLNDGRQVF-DLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSV 415
           +LID+Y+KC  +    ++F  L D  E S  WNT+I   ++ G+ E A+ +F +M  +SV
Sbjct: 773 ALIDLYAKCSDMESSLEIFSSLRDVNEVS--WNTIIVGYSKSGFGEAALSVFREMRAASV 830

Query: 416 KPDKITLAVILNACT------HSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAG 469
              ++T + +L AC       H G V       E  T +   I +      LI+  A+ G
Sbjct: 831 PSTQVTYSSVLRACASTASINHVGQVH---CLIEKSTFNSDTIVSNS----LIDSYAKCG 883

Query: 470 CSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQL 513
           C        E +  E D   WNA+     +HG   M +++ D +
Sbjct: 884 CIRDAREIFETL-KECDLVSWNAIISGYAVHGQAAMAQELFDMM 926



 Score =  128 bits (321), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 98/403 (24%), Positives = 178/403 (44%), Gaps = 74/403 (18%)

Query: 54   TLAFILQQCAESKSLKLGKRVHLH-LKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFD 112
            +L+ +LQ CA    L LGK++H H +K+        F+ N LI +Y KC SD        
Sbjct: 735  SLSSVLQACANMPLLDLGKQIHNHAIKIGHESE--LFVGNALIDLYAKC-SD-------- 783

Query: 113  KIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKF 172
                                  M+ +  +F ++ + + VSWNT+I+GY+KSG  E  L  
Sbjct: 784  ----------------------MESSLEIFSSLRDVNEVSWNTIIVGYSKSGFGEAALSV 821

Query: 173  YKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAK 232
            ++ +R  S+   + +++ +L  C     +    QVH  +  + F S+ ++S+S++D+YAK
Sbjct: 822  FREMRAASVPSTQVTYSSVLRACASTASINHVGQVHCLIEKSTFNSDTIVSNSLIDSYAK 881

Query: 233  CGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEK----NPVSWTTL 288
            CG + DAR +F+     D+++W  ++SGYA  G    A +LF+ M +     N +++  L
Sbjct: 882  CGCIRDAREIFETLKECDLVSWNAIISGYAVHGQAAMAQELFDMMSKNSIKANDITFVAL 941

Query: 289  IAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNF 348
            ++     GL  + L LF  M                        L HG       I  + 
Sbjct: 942  LSVCGSTGLVSQGLSLFDSM-----------------------RLDHG-------IEPSM 971

Query: 349  RSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFH 408
               T +    + +  + G LND         +  ++M+W  ++S+   H   E   R   
Sbjct: 972  EHYTCI----VRLLGRAGRLNDALNFIGDIPSAPSAMVWRALLSSCIVHKNVELG-RFSA 1026

Query: 409  DMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGI 451
            + V      D+ T  ++ N  + +G + + + +F     ++G+
Sbjct: 1027 EKVLEIEPQDETTYVLLSNMYSAAGSLDQ-VAFFRKSMRNIGV 1068



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 66/260 (25%), Positives = 121/260 (46%), Gaps = 36/260 (13%)

Query: 184 NEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLS--NVVISSSIVDAYAKCGELSDARR 241
           + +++A +L  CV   + +  R VHG V+ +G L+  ++  ++ +++ Y K G    A R
Sbjct: 427 DSYAYARLLQGCVARGDARGGRAVHGHVVRSGGLARLDLFCANVLLNMYTKVGPFGSAHR 486

Query: 242 LFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKA 301
           +FD    R+++++ T+V G+A  G+ E AS LF  +       W            G + 
Sbjct: 487 VFDGLPERNMVSFVTLVQGHALRGEFEEASALFQRL------RWE-----------GHEV 529

Query: 302 LELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDM 361
                         NQ   ++ L    ++ +L     VH    +     N  V S+LID 
Sbjct: 530 --------------NQFVLTTVLKLVVAMDTLGLAWGVHACACKLGHDRNAFVGSALIDA 575

Query: 362 YSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKIT 421
           YS CG ++D R+VFD    K+ ++ W  M+S  +++   E  +++F  M  +  K +   
Sbjct: 576 YSMCGVVSDARRVFDGIVGKD-AVAWTAMVSCYSENDCPENTLQIFSKMRVAVSKLNPFA 634

Query: 422 LAVILNA--CTHSGLVQEGL 439
           L  +L A  C  S ++ +G+
Sbjct: 635 LTSVLRAAVCLSSVVLGKGI 654


>gi|328774753|gb|AEB39776.1| pentatricopeptide repeat protein 78 [Funaria hygrometrica]
          Length = 1020

 Score =  306 bits (785), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 174/585 (29%), Positives = 298/585 (50%), Gaps = 67/585 (11%)

Query: 10  INRKNLPNNCLIQSFLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLK 69
           +NR  +  N +I     L   G   EA      + + G+     T   +L  C    +L 
Sbjct: 407 VNRDLIAWNTMIGG---LAEGGNWEEASEIYHQMQREGMMPNKITYVILLNACVNPTALH 463

Query: 70  LGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGY 129
            G+ +H       R     F+                    FD I V+N      ++S Y
Sbjct: 464 WGREIH------SRVVKDGFM--------------------FD-ISVQNA-----LISMY 491

Query: 130 ANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFA 189
           A  G +K AR LF+ M  +D++SW  MI G AKSG   E L  ++ +++  +  N  ++ 
Sbjct: 492 ARCGSIKDARLLFNKMVRKDIISWTAMIGGLAKSGLGAEALAVFQDMQQAGLKPNRVTYT 551

Query: 190 GILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDAR 249
            IL  C     L   R++H QV+  G  ++  +++++V+ Y+ CG +          DAR
Sbjct: 552 SILNACSSPAALDWGRRIHQQVIEAGLATDAHVANTLVNMYSMCGSVK---------DAR 602

Query: 250 DVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMM 309
            V                      F+ M +++ V++  +I GY  + LG++AL+LF R+ 
Sbjct: 603 QV----------------------FDRMTQRDIVAYNAMIGGYAAHNLGKEALKLFDRLQ 640

Query: 310 ILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLN 369
              ++P++ T+ + L ACA+  SL+  K++H  +++  + S+T + ++L+  Y+KCG  +
Sbjct: 641 EEGLKPDKVTYINMLNACANSGSLEWAKEIHSLVLKDGYLSDTSLGNALVSTYAKCGSFS 700

Query: 370 DGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNAC 429
           D   VFD    K N + WN +I    QHG  +  ++LF  M    +KPD +T   +L+AC
Sbjct: 701 DALLVFDKM-MKRNVISWNAIIGGCAQHGRGQDVLQLFERMKMEGIKPDIVTFVSLLSAC 759

Query: 430 THSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYL 489
           +H+GL++EG  YF SM+ D GI P  EH+ C+++LL +AG  D++   ++ MP++ ++ +
Sbjct: 760 SHAGLLEEGRRYFCSMSRDFGITPTIEHYGCMVDLLGRAGQLDEVEALIKTMPFQANTRI 819

Query: 490 WNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINE 549
           W AL G CRIHGN+ +  +  +  +  +P ++A +  LS +Y+A G      K+R+L+ +
Sbjct: 820 WGALLGACRIHGNVPVAERAAESSLKLDPDNAAVYVALSHMYAAAGMWDSAAKLRKLMEQ 879

Query: 550 RQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQM 594
           R   KE   SWIE+ +K+H F   D  HP  + +Y+ L++L   M
Sbjct: 880 RGVTKEPGRSWIEVGDKLHYFVAEDRSHPESEKIYAELDKLTHAM 924



 Score =  211 bits (537), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 141/547 (25%), Positives = 247/547 (45%), Gaps = 105/547 (19%)

Query: 25  LSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRK 84
           +  +  G + EA+  L  + Q G+ L   T   +L  C    +L+ G+ +H+   +  R 
Sbjct: 217 VGYVQYGYIEEALKLLREMQQHGLALGRATTMRLLSSCKSPSALECGREIHVE-AMKARL 275

Query: 85  TPTTFLSNHLISMYFKCGSDVDAR-------------------------------KVFDK 113
                ++N +++MY KCGS  +AR                               ++F K
Sbjct: 276 LFDVNVANCILNMYAKCGSIHEAREVFDKMETKSVVSWTIIIGGYADCGHSEIAFEIFQK 335

Query: 114 IP----VKNLFSYNNMLSG-----------------------------------YANLGM 134
           +     V N  +Y N+L+                                    YA  G 
Sbjct: 336 MQQEGVVPNRITYINVLNAFSGPAALKWGKTVHSHILNAGHESDLAVGTALVKMYAKCGS 395

Query: 135 MKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTI 194
            K  R +F+ +  RD+++WNTMI G A+ G  EE  + Y  ++R  +  N+ ++  +L  
Sbjct: 396 YKDCRQVFEKLVNRDLIAWNTMIGGLAEGGNWEEASEIYHQMQREGMMPNKITYVILLNA 455

Query: 195 CVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTW 254
           CV    L   R++H +V+  GF+ ++ + ++++  YA+CG + DAR LF++   +D+++W
Sbjct: 456 CVNPTALHWGREIHSRVVKDGFMFDISVQNALISMYARCGSIKDARLLFNKMVRKDIISW 515

Query: 255 TTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIR 314
           T M+ G AK                               +GLG +AL +F  M    ++
Sbjct: 516 TAMIGGLAK-------------------------------SGLGAEALAVFQDMQQAGLK 544

Query: 315 PNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQV 374
           PN+ T++S L AC+S  +L  G+++H  +I     ++  V ++L++MYS CG + D RQV
Sbjct: 545 PNRVTYTSILNACSSPAALDWGRRIHQQVIEAGLATDAHVANTLVNMYSMCGSVKDARQV 604

Query: 375 FDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGL 434
           FD    ++  + +N MI     H   ++A++LF  +    +KPDK+T   +LNAC +SG 
Sbjct: 605 FDRMTQRD-IVAYNAMIGGYAAHNLGKEALKLFDRLQEEGLKPDKVTYINMLNACANSGS 663

Query: 435 VQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALH 494
           + E      S+    G + +      L+   A+ G     +   +KM  + +   WNA+ 
Sbjct: 664 L-EWAKEIHSLVLKDGYLSDTSLGNALVSTYAKCGSFSDALLVFDKM-MKRNVISWNAII 721

Query: 495 GVCRIHG 501
           G C  HG
Sbjct: 722 GGCAQHG 728



 Score =  200 bits (509), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 141/547 (25%), Positives = 252/547 (46%), Gaps = 99/547 (18%)

Query: 36  AISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLI 95
           A+  +  L Q+G R+ +     +L++C E K L  G+ VH H+ +        +  N LI
Sbjct: 125 AMDVVQYLQQQGARVNSCDYMKMLKRCIEVKDLVAGREVHEHI-IQHCTVLDQYTVNALI 183

Query: 96  SMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNT 155
           +MY +CGS  +AR+V++K+                             N  ER V SWN 
Sbjct: 184 NMYIQCGSIEEARQVWNKL-----------------------------NHTERTVHSWNA 214

Query: 156 MIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTG 215
           M++GY + G +EE LK  + +++  ++    +   +L+ C     L+  R++H + +   
Sbjct: 215 MVVGYVQYGYIEEALKLLREMQQHGLALGRATTMRLLSSCKSPSALECGREIHVEAMKAR 274

Query: 216 FLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFN 275
            L +V +++ I++ YAKCG + +AR +FD+ + + V++WT ++ GYA  G  E A ++F 
Sbjct: 275 LLFDVNVANCILNMYAKCGSIHEAREVFDKMETKSVVSWTIIIGGYADCGHSEIAFEIFQ 334

Query: 276 EMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKH 335
           +M ++  V                               PN+ T+ + L A +   +LK 
Sbjct: 335 KMQQEGVV-------------------------------PNRITYINVLNAFSGPAALKW 363

Query: 336 GKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALT 395
           GK VH  ++     S+  V ++L+ MY+KCG   D RQVF+   N++  + WNTMI  L 
Sbjct: 364 GKTVHSHILNAGHESDLAVGTALVKMYAKCGSYKDCRQVFEKLVNRD-LIAWNTMIGGLA 422

Query: 396 QHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACT-----------HSGLVQEGLTY--- 441
           + G  E+A  ++H M R  + P+KIT  ++LNAC            HS +V++G  +   
Sbjct: 423 EGGNWEEASEIYHQMQREGMMPNKITYVILLNACVNPTALHWGREIHSRVVKDGFMFDIS 482

Query: 442 ----FESMTHDLGIIPNQE------------HHACLIELLAQAGCSDQ---LMNQLEKMP 482
                 SM    G I +                  +I  LA++G   +   +   +++  
Sbjct: 483 VQNALISMYARCGSIKDARLLFNKMVRKDIISWTAMIGGLAKSGLGAEALAVFQDMQQAG 542

Query: 483 YEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSA-THGLLSSIYSALGKGRLVE 541
            + +   + ++   C     +D GR++  Q+I+    + A     L ++YS  G    V+
Sbjct: 543 LKPNRVTYTSILNACSSPAALDWGRRIHQQVIEAGLATDAHVANTLVNMYSMCGS---VK 599

Query: 542 KVRQLIN 548
             RQ+ +
Sbjct: 600 DARQVFD 606



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 74/349 (21%), Positives = 155/349 (44%), Gaps = 36/349 (10%)

Query: 167 EEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSI 226
           +  +   + L++     N   +  +L  C+++++L   R+VH          +++   ++
Sbjct: 123 DRAMDVVQYLQQQGARVNSCDYMKMLKRCIEVKDLVAGREVH---------EHIIQHCTV 173

Query: 227 VDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEM--PEKNPVS 284
           +D Y                      T   +++ Y + G +E A +++N++   E+   S
Sbjct: 174 LDQY----------------------TVNALINMYIQCGSIEEARQVWNKLNHTERTVHS 211

Query: 285 WTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLI 344
           W  ++ GY + G  ++AL+L   M    +   + T    L +C S  +L+ G+++H   +
Sbjct: 212 WNAMVVGYVQYGYIEEALKLLREMQQHGLALGRATTMRLLSSCKSPSALECGREIHVEAM 271

Query: 345 RTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAI 404
           +     +  V + +++MY+KCG +++ R+VFD  + K + + W  +I      G+ E A 
Sbjct: 272 KARLLFDVNVANCILNMYAKCGSIHEAREVFDKMETK-SVVSWTIIIGGYADCGHSEIAF 330

Query: 405 RLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIEL 464
            +F  M +  V P++IT   +LNA +    ++ G T   S   + G   +      L+++
Sbjct: 331 EIFQKMQQEGVVPNRITYINVLNAFSGPAALKWGKT-VHSHILNAGHESDLAVGTALVKM 389

Query: 465 LAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQL 513
            A+ G         EK+    D   WN + G     GN +   ++  Q+
Sbjct: 390 YAKCGSYKDCRQVFEKL-VNRDLIAWNTMIGGLAEGGNWEEASEIYHQM 437


>gi|449499218|ref|XP_004160754.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Cucumis sativus]
          Length = 766

 Score =  306 bits (785), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 155/474 (32%), Positives = 266/474 (56%), Gaps = 37/474 (7%)

Query: 133 GMMKHARNLFDN--MAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAG 190
           G ++ AR++F++  +  R    WN MI GY +SG  E+ L+ +  + +  I  + +++  
Sbjct: 321 GSLQEARSIFNSHFITCRFNAPWNAMISGYLRSGFNEKALELFAKMCQNDIYLDHYTYCS 380

Query: 191 ILTICVKLEELKLTRQVHGQVLVTGFLSNVV-ISSSIVDAYAKCGELSDARRLFDETDAR 249
           +      L+ L L ++VH + + +G   N V IS+++ +AYAKCG               
Sbjct: 381 VFNAIAALKCLSLGKKVHARAIKSGLEVNYVSISNAVANAYAKCGS-------------- 426

Query: 250 DVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMM 309
                            +E   K+FN M +++ +SWT+L+  Y++     KA+E+F+ M 
Sbjct: 427 -----------------LEDVRKVFNRMEDRDLISWTSLVTAYSQCSEWDKAIEIFSNMR 469

Query: 310 ILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLN 369
              I PNQ TFSS L +CA++  L++G+QVHG + +     +  + S+L+DMY+KCGCL 
Sbjct: 470 AEGIAPNQFTFSSVLVSCANLCLLEYGQQVHGIICKVGLDMDKCIESALVDMYAKCGCLG 529

Query: 370 DGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNAC 429
           D ++VF+   N + ++ W  +I+   QHG  + A++LF  MV+  V+P+ +T   +L AC
Sbjct: 530 DAKKVFNRISNAD-TVSWTAIIAGHAQHGIVDDALQLFRRMVQLGVEPNAVTFLCVLFAC 588

Query: 430 THSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYL 489
           +H GLV+EGL YF+ M    G++P  EH+AC+++LL++ G  +  M  + +MP E +  +
Sbjct: 589 SHGGLVEEGLQYFKLMKKTYGLVPEMEHYACIVDLLSRVGHLNDAMEFISRMPVEPNEMV 648

Query: 490 WNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINE 549
           W  L G CR+HGN+++G     +++    ++SAT+ LLS+ Y   G  +    +R ++ E
Sbjct: 649 WQTLLGACRVHGNVELGELAAQKILSFKAENSATYVLLSNTYIESGSYKDGLSLRHVMKE 708

Query: 550 RQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQMG--EDAPSL 601
           +  KKE   SWI +   +H F   D  HP +D +Y+ LE+L  ++   +D P L
Sbjct: 709 QGVKKEPGCSWISVNGTLHKFYAGDQQHPEKDKIYAKLEELKLKLISLDDVPDL 762



 Score =  179 bits (453), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 115/382 (30%), Positives = 183/382 (47%), Gaps = 66/382 (17%)

Query: 50  LPAETLAFILQQCAESKSLKLGKRVH-LHLKLTQRKTPTTFLSNHLISMYFKCGSDVDAR 108
           L  + L  +L+ C +++ LK  K VH   LK       +  L NH+   Y KC SD+DA 
Sbjct: 66  LQIQPLVDLLRDCVDARFLKQAKTVHGFLLKSKFSNHHSLVLLNHVAHAYSKC-SDIDA- 123

Query: 109 KVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEE 168
                                        A  LFD M++R+  SW  +I G A++G   +
Sbjct: 124 -----------------------------ACRLFDQMSQRNTFSWTVLIAGLAENGLFLD 154

Query: 169 GLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVD 228
           G +F+  ++   I  ++F+++GIL IC+ L+ ++L   VH Q+++ GF S+  +S     
Sbjct: 155 GFEFFCEMQSQGIFPDQFAYSGILQICIGLDSIELGNMVHAQIVIRGFTSHTFVS----- 209

Query: 229 AYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTL 288
                                     T +++ YAKL ++E + K+FN M E N VSW  +
Sbjct: 210 --------------------------TALLNMYAKLQEIEDSYKVFNTMTEVNVVSWNAM 243

Query: 289 IAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNF 348
           I G+T N L   A +LF RMM   + P+  TF     A   +  +   K+V G+ +    
Sbjct: 244 ITGFTSNDLYLDAFDLFLRMMGEGVTPDAQTFIGVAKAIGMLRDVNKAKEVSGYALELGV 303

Query: 349 RSNTIVMSSLIDMYSKCGCLNDGRQVFD--LTDNKENSMLWNTMISALTQHGYDEQAIRL 406
            SNT+V ++LIDM SKCG L + R +F+      + N+  WN MIS   + G++E+A+ L
Sbjct: 304 DSNTLVGTALIDMNSKCGSLQEARSIFNSHFITCRFNAP-WNAMISGYLRSGFNEKALEL 362

Query: 407 FHDMVRSSVKPDKITLAVILNA 428
           F  M ++ +  D  T   + NA
Sbjct: 363 FAKMCQNDIYLDHYTYCSVFNA 384



 Score =  146 bits (368), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 107/430 (24%), Positives = 186/430 (43%), Gaps = 67/430 (15%)

Query: 12  RKNLPNNCLIQSFLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLG 71
           R N P N +I  +L     G   +A+     + Q  I L   T   +    A  K L LG
Sbjct: 338 RFNAPWNAMISGYLR---SGFNEKALELFAKMCQNDIYLDHYTYCSVFNAIAALKCLSLG 394

Query: 72  KRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYAN 131
           K+VH                               AR +   + V  +   N + + YA 
Sbjct: 395 KKVH-------------------------------ARAIKSGLEVNYVSISNAVANAYAK 423

Query: 132 LGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGI 191
            G ++  R +F+ M +RD++SW +++  Y++    ++ ++ +  +R   I+ N+F+F+ +
Sbjct: 424 CGSLEDVRKVFNRMEDRDLISWTSLVTAYSQCSEWDKAIEIFSNMRAEGIAPNQFTFSSV 483

Query: 192 LTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDV 251
           L  C  L  L+  +QVHG +   G   +  I S++VD YAKCG L DA+++F+     D 
Sbjct: 484 LVSCANLCLLEYGQQVHGIICKVGLDMDKCIESALVDMYAKCGCLGDAKKVFNRISNADT 543

Query: 252 LTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMIL 311
           ++WT +++G+A+ G ++ A                               L+LF RM+ L
Sbjct: 544 VSWTAIIAGHAQHGIVDDA-------------------------------LQLFRRMVQL 572

Query: 312 RIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRT-NFRSNTIVMSSLIDMYSKCGCLND 370
            + PN  TF   L AC+    ++ G Q    + +T          + ++D+ S+ G LND
Sbjct: 573 GVEPNAVTFLCVLFACSHGGLVEEGLQYFKLMKKTYGLVPEMEHYACIVDLLSRVGHLND 632

Query: 371 GRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACT 430
             +       + N M+W T++ A   HG  E    L    + S    +  T  ++ N   
Sbjct: 633 AMEFISRMPVEPNEMVWQTLLGACRVHGNVELG-ELAAQKILSFKAENSATYVLLSNTYI 691

Query: 431 HSGLVQEGLT 440
            SG  ++GL+
Sbjct: 692 ESGSYKDGLS 701



 Score = 55.5 bits (132), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 40/164 (24%), Positives = 71/164 (43%), Gaps = 17/164 (10%)

Query: 327 CASIVSLKHGKQVHGFLIRTNFRS--NTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENS 384
           C     LK  K VHGFL+++ F +  + ++++ +   YSKC  ++   ++FD    + N+
Sbjct: 78  CVDARFLKQAKTVHGFLLKSKFSNHHSLVLLNHVAHAYSKCSDIDAACRLFDQMSQR-NT 136

Query: 385 MLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFES 444
             W  +I+ L ++G        F +M    + PD+   + IL  C     ++ G     +
Sbjct: 137 FSWTVLIAGLAENGLFLDGFEFFCEMQSQGIFPDQFAYSGILQICIGLDSIELG-----N 191

Query: 445 MTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSY 488
           M H   +I     H  +         S  L+N   K+    DSY
Sbjct: 192 MVHAQIVIRGFTSHTFV---------STALLNMYAKLQEIEDSY 226


>gi|125597850|gb|EAZ37630.1| hypothetical protein OsJ_21964 [Oryza sativa Japonica Group]
          Length = 583

 Score =  306 bits (785), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 169/523 (32%), Positives = 279/523 (53%), Gaps = 67/523 (12%)

Query: 59  LQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKN 118
           +  C E ++L  G++VH  + +T R  P  FL   L++MY +CG+               
Sbjct: 17  ITACIERRALWEGRQVHARM-ITARYRPAVFLGTRLVTMYVRCGA--------------- 60

Query: 119 LFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRR 178
                           +  ARN+ D M ER VVSW TMI GY+++    E L  +  + R
Sbjct: 61  ----------------LDDARNVLDRMPERSVVSWTTMISGYSQTERHVEALDLFIKMLR 104

Query: 179 FSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSD 238
                NE++ A +LT C   + +   +QVH  ++ T F S++ + SS++D YAK   + +
Sbjct: 105 AGCIPNEYTLATVLTSCSGPQSIYQGKQVHSLLVKTNFESHMFVGSSLLDMYAKSENIQE 164

Query: 239 ARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLG 298
           ARR                               +F+ +PE++ VS T +I+GY + GL 
Sbjct: 165 ARR-------------------------------VFDTLPERDVVSCTAIISGYAQKGLD 193

Query: 299 QKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSL 358
           ++AL+LF ++    ++ N  TF++ + A + + SL +GKQVH  ++R        + +SL
Sbjct: 194 EEALDLFRQLYSEGMQCNHVTFTTLVTALSGLASLDYGKQVHALILRKELPFFVALQNSL 253

Query: 359 IDMYSKCGCLNDGRQVFDLTDNKENSML-WNTMISALTQHGYDEQAIRLFHDMVRSSVKP 417
           IDMYSKCG L   R+VFD  +  E S++ WN M+    +HG   + I LF D+    VKP
Sbjct: 254 IDMYSKCGKLLYSRRVFD--NMLERSVVSWNAMLMGYGRHGLGHEVISLFKDL-HKEVKP 310

Query: 418 DKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQ 477
           D +TL  +L+ C+H GLV EGL  F+++  +   + +  H+ C+I+LL ++G  ++ +N 
Sbjct: 311 DSVTLLAVLSGCSHGGLVDEGLDIFDTVVKEQSALLHTGHYGCIIDLLGRSGRLEKALNL 370

Query: 478 LEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKG 537
           +E MP+E    +W +L G CR+H N+ +G  V  +L++  P+++  + +LS+IY+A G  
Sbjct: 371 IENMPFESTPSIWGSLLGACRVHANVHVGELVAQKLLEMEPENAGNYVILSNIYAAAGMW 430

Query: 538 RLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMR 580
           + V KVR+L+ E+   KE   SWI ++  +H F  S+  HP +
Sbjct: 431 KDVFKVRKLMLEKTVTKEPGQSWIILDKVIHTFHSSERFHPSK 473



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 100/404 (24%), Positives = 184/404 (45%), Gaps = 67/404 (16%)

Query: 188 FAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETD 247
           +   +T C++   L   RQVH +++   +   V + + +V  Y +CG L DAR + D   
Sbjct: 13  YEAAITACIERRALWEGRQVHARMITARYRPAVFLGTRLVTMYVRCGALDDARNVLDRMP 72

Query: 248 ARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTR 307
            R V++WTTM+SGY++               E++                  +AL+LF +
Sbjct: 73  ERSVVSWTTMISGYSQ--------------TERHV-----------------EALDLFIK 101

Query: 308 MMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGC 367
           M+     PN++T ++ L +C+   S+  GKQVH  L++TNF S+  V SSL+DMY+K   
Sbjct: 102 MLRAGCIPNEYTLATVLTSCSGPQSIYQGKQVHSLLVKTNFESHMFVGSSLLDMYAKSEN 161

Query: 368 LNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILN 427
           + + R+VFD T  + + +    +IS   Q G DE+A+ LF  +    ++ + +T   ++ 
Sbjct: 162 IQEARRVFD-TLPERDVVSCTAIISGYAQKGLDEEALDLFRQLYSEGMQCNHVTFTTLVT 220

Query: 428 ACT-----------HSGLVQEGLTYFESMTHDL--------------GIIPNQEHHA--- 459
           A +           H+ ++++ L +F ++ + L               +  N    +   
Sbjct: 221 ALSGLASLDYGKQVHALILRKELPFFVALQNSLIDMYSKCGKLLYSRRVFDNMLERSVVS 280

Query: 460 --CLIELLAQAGCSDQLMNQLEKMPYE--HDSYLWNALHGVCRIHGNIDMGRKVVDQLID 515
              ++    + G   ++++  + +  E   DS    A+   C   G +D G  + D ++ 
Sbjct: 281 WNAMLMGYGRHGLGHEVISLFKDLHKEVKPDSVTLLAVLSGCSHGGLVDEGLDIFDTVVK 340

Query: 516 QNPQSSATH-GLLSSIYSALGKGRLVEKVRQLINERQFKKEQAI 558
           +  QS+  H G    I   LG+   +EK   LI    F+   +I
Sbjct: 341 E--QSALLHTGHYGCIIDLLGRSGRLEKALNLIENMPFESTPSI 382



 Score =  111 bits (278), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 85/292 (29%), Positives = 143/292 (48%), Gaps = 39/292 (13%)

Query: 21  IQSFLSLISK-GQLSEAISSLDLLAQ--RGIRLPAE-TLAFILQQCAESKSLKLGKRVHL 76
           + S+ ++IS   Q    + +LDL  +  R   +P E TLA +L  C+  +S+  GK+VH 
Sbjct: 76  VVSWTTMISGYSQTERHVEALDLFIKMLRAGCIPNEYTLATVLTSCSGPQSIYQGKQVHS 135

Query: 77  HLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMK 136
            L  T  ++   F+ + L+ MY K  +  +AR+VFD +P +++ S   ++SGYA  G+ +
Sbjct: 136 LLVKTNFES-HMFVGSSLLDMYAKSENIQEARRVFDTLPERDVVSCTAIISGYAQKGLDE 194

Query: 137 HARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICV 196
            A +LF  +                      EG++           CN  +F  ++T   
Sbjct: 195 EALDLFRQL--------------------YSEGMQ-----------CNHVTFTTLVTALS 223

Query: 197 KLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTT 256
            L  L   +QVH  +L       V + +S++D Y+KCG+L  +RR+FD    R V++W  
Sbjct: 224 GLASLDYGKQVHALILRKELPFFVALQNSLIDMYSKCGKLLYSRRVFDNMLERSVVSWNA 283

Query: 257 MVSGYAKLGDMESASKLFNEM-PEKNPVSWTTL--IAGYTRNGLGQKALELF 305
           M+ GY + G       LF ++  E  P S T L  ++G +  GL  + L++F
Sbjct: 284 MLMGYGRHGLGHEVISLFKDLHKEVKPDSVTLLAVLSGCSHGGLVDEGLDIF 335



 Score = 79.3 bits (194), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 43/141 (30%), Positives = 71/141 (50%), Gaps = 6/141 (4%)

Query: 318 HTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDL 377
           H + + + AC    +L  G+QVH  +I   +R    + + L+ MY +CG L+D R V D 
Sbjct: 11  HEYEAAITACIERRALWEGRQVHARMITARYRPAVFLGTRLVTMYVRCGALDDARNVLDR 70

Query: 378 TDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQE 437
              + + + W TMIS  +Q     +A+ LF  M+R+   P++ TLA +L +C+    + +
Sbjct: 71  MPER-SVVSWTTMISGYSQTERHVEALDLFIKMLRAGCIPNEYTLATVLTSCSGPQSIYQ 129

Query: 438 GLTYFESMTHDLGIIPNQEHH 458
           G        H L +  N E H
Sbjct: 130 G-----KQVHSLLVKTNFESH 145


>gi|359475558|ref|XP_003631701.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Vitis vinifera]
          Length = 848

 Score =  306 bits (785), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 190/570 (33%), Positives = 300/570 (52%), Gaps = 67/570 (11%)

Query: 27  LISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTP 86
           LI  G  ++A+  LD +   GI + + T+A IL  CA+   +     +HL++ +      
Sbjct: 248 LIQNGNAAQALDVLDEMRLEGINMDSVTVASILPVCAQLGDISTATLIHLYV-IKHGLEF 306

Query: 87  TTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMA 146
             F+SN LI+MY K                            + NLG    A+ +F  M 
Sbjct: 307 ELFVSNALINMYAK----------------------------FGNLG---DAQKVFQQMF 335

Query: 147 ERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQ 206
            RDVVSWN++I  Y ++        F+  ++   +  +  +   + +I  +  + K +R 
Sbjct: 336 LRDVVSWNSIIAAYEQNDDPVTARGFFFKMQLNGLEPDLLTLVSLASIAAQSRDYKNSRS 395

Query: 207 VHGQVLVTGFL-SNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLG 265
           VHG ++  G+L   VVI ++++D YAK                               LG
Sbjct: 396 VHGFIMRRGWLMEAVVIGNAVMDMYAK-------------------------------LG 424

Query: 266 DMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILR-IRPNQHTFSSCL 324
            ++SA K+FN +P K+ VSW TLI+GYT+NGL  +A+E++  M   R I+ NQ T+ S L
Sbjct: 425 VIDSAHKVFNLIPVKDVVSWNTLISGYTQNGLASEAIEVYRMMEECREIKLNQGTWVSIL 484

Query: 325 CACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENS 384
            A A + +L+ G ++HG LI+TN   +  V + LID+Y KCG L D   +F     +E+S
Sbjct: 485 AAYAHVGALQQGMRIHGHLIKTNLHLDVFVGTCLIDLYGKCGRLVDAMCLF-YQVPRESS 543

Query: 385 MLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFES 444
           + WN +IS    HG+ E+A++LF +M    VKPD +T   +L+AC+HSGLV EG  +F  
Sbjct: 544 VPWNAIISCHGIHGHGEKALKLFREMQDEGVKPDHVTFISLLSACSHSGLVDEGKWFFHL 603

Query: 445 MTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNID 504
           M  + GI P+ +H+ C+++LL +AG  +   + ++ MP   D+ +W AL G CRIHGNI+
Sbjct: 604 M-QEYGIKPSLKHYGCMVDLLGRAGFLEMAYDFIKDMPLHPDASIWGALLGACRIHGNIE 662

Query: 505 MGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIE 564
           +G+   D+L + + ++   + LLS+IY+ +GK   V+KVR L  ER  KK    S IE+ 
Sbjct: 663 LGKFASDRLFEVDSENVGYYVLLSNIYANVGKWEGVDKVRSLARERGLKKTPGWSSIEVN 722

Query: 565 NKVHAFSVSDSLHPMRDVLYSVLEQLAGQM 594
            +V  F   +  HP    +Y+ L  L  +M
Sbjct: 723 RRVDIFYTGNQSHPKCKEIYAELRILTAKM 752



 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 122/462 (26%), Positives = 216/462 (46%), Gaps = 52/462 (11%)

Query: 101 CGSDVDARK----VFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTM 156
           C + VD RK    VF      ++F   +++  Y+  G +  AR+LFD+M  RD+ SWN M
Sbjct: 185 CQTLVDGRKIHCWVFKLGFQWDVFVAASLIHMYSRFGFVGIARSLFDDMPFRDMGSWNAM 244

Query: 157 IIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGF 216
           I G  ++G   + L     +R   I+ +  + A IL +C +L ++     +H  V+  G 
Sbjct: 245 ISGLIQNGNAAQALDVLDEMRLEGINMDSVTVASILPVCAQLGDISTATLIHLYVIKHGL 304

Query: 217 LSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNE 276
              + +S+++++ YAK G L DA+++F +   RDV++W ++++ Y +  D          
Sbjct: 305 EFELFVSNALINMYAKFGNLGDAQKVFQQMFLRDVVSWNSIIAAYEQNDD---------- 354

Query: 277 MPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHG 336
                PV+                A   F +M +  + P+  T  S     A     K+ 
Sbjct: 355 -----PVT----------------ARGFFFKMQLNGLEPDLLTLVSLASIAAQSRDYKNS 393

Query: 337 KQVHGFLIRTNFRSNTIVM-SSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALT 395
           + VHGF++R  +    +V+ ++++DMY+K G ++   +VF+L   K+  + WNT+IS  T
Sbjct: 394 RSVHGFIMRRGWLMEAVVIGNAVMDMYAKLGVIDSAHKVFNLIPVKD-VVSWNTLISGYT 452

Query: 396 QHGYDEQAIRLFHDMVR-SSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPN 454
           Q+G   +AI ++  M     +K ++ T   IL A  H G +Q+G+     +      I  
Sbjct: 453 QNGLASEAIEVYRMMEECREIKLNQGTWVSILAAYAHVGALQQGMRIHGHL------IKT 506

Query: 455 QEH-----HACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKV 509
             H       CLI+L  + G     M    ++P E  S  WNA+     IHG+ +   K+
Sbjct: 507 NLHLDVFVGTCLIDLYGKCGRLVDAMCLFYQVPRE-SSVPWNAIISCHGIHGHGEKALKL 565

Query: 510 VDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQ 551
             ++ D+  +    H    S+ SA     LV++ +   +  Q
Sbjct: 566 FREMQDEGVKPD--HVTFISLLSACSHSGLVDEGKWFFHLMQ 605



 Score =  122 bits (305), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 80/305 (26%), Positives = 144/305 (47%), Gaps = 36/305 (11%)

Query: 129 YANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLK-FYKVLRRFSISCNEFS 187
           YA+LG +  +R  FD +  +DV +WN+MI  Y ++G   E +  FY++L       + ++
Sbjct: 118 YASLGDVSLSRGTFDQIQRKDVYTWNSMISAYVRNGHFREAIDCFYQLLLVTKFQADFYT 177

Query: 188 FAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETD 247
           F  +L  C  L +    R++H  V   GF  +V +++S++  Y++ G +  AR LFD+  
Sbjct: 178 FPPVLKACQTLVD---GRKIHCWVFKLGFQWDVFVAASLIHMYSRFGFVGIARSLFDDMP 234

Query: 248 ARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTR 307
            RD+ +W  M+S                               G  +NG   +AL++   
Sbjct: 235 FRDMGSWNAMIS-------------------------------GLIQNGNAAQALDVLDE 263

Query: 308 MMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGC 367
           M +  I  +  T +S L  CA +  +     +H ++I+        V ++LI+MY+K G 
Sbjct: 264 MRLEGINMDSVTVASILPVCAQLGDISTATLIHLYVIKHGLEFELFVSNALINMYAKFGN 323

Query: 368 LNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILN 427
           L D ++VF     ++  + WN++I+A  Q+     A   F  M  + ++PD +TL  + +
Sbjct: 324 LGDAQKVFQQMFLRD-VVSWNSIIAAYEQNDDPVTARGFFFKMQLNGLEPDLLTLVSLAS 382

Query: 428 ACTHS 432
               S
Sbjct: 383 IAAQS 387



 Score =  107 bits (266), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 68/250 (27%), Positives = 122/250 (48%), Gaps = 39/250 (15%)

Query: 185 EFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFD 244
           E  F  +   C K     L +++H  ++V+G + +  IS  +V+ YA  G++S +R  FD
Sbjct: 76  EIDFNSLFDSCTKT---LLAKRLHALLVVSGKIQSNFISIRLVNLYASLGDVSLSRGTFD 132

Query: 245 ETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALEL 304
           +   +DV TW +M+S                                Y RNG  ++A++ 
Sbjct: 133 QIQRKDVYTWNSMIS-------------------------------AYVRNGHFREAIDC 161

Query: 305 FTRMMIL-RIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYS 363
           F +++++ + + + +TF   L AC ++V    G+++H ++ +  F+ +  V +SLI MYS
Sbjct: 162 FYQLLLVTKFQADFYTFPPVLKACQTLVD---GRKIHCWVFKLGFQWDVFVAASLIHMYS 218

Query: 364 KCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLA 423
           + G +   R +FD    ++    WN MIS L Q+G   QA+ +  +M    +  D +T+A
Sbjct: 219 RFGFVGIARSLFDDMPFRDMGS-WNAMISGLIQNGNAAQALDVLDEMRLEGINMDSVTVA 277

Query: 424 VILNACTHSG 433
            IL  C   G
Sbjct: 278 SILPVCAQLG 287


>gi|15229345|ref|NP_187126.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207287|sp|Q9SR01.1|PP212_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g04750, mitochondrial; Flags: Precursor
 gi|6175175|gb|AAF04901.1|AC011437_16 hypothetical protein [Arabidopsis thaliana]
 gi|332640610|gb|AEE74131.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 661

 Score =  306 bits (785), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 165/489 (33%), Positives = 272/489 (55%), Gaps = 10/489 (2%)

Query: 120 FSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRF 179
           + +N+++  Y  LG    A  +F  M   DV S+N MI+GYAK G   E LK Y  +   
Sbjct: 167 YLWNSLVKFYMELGNFGVAEKVFARMPHPDVSSFNVMIVGYAKQGFSLEALKLYFKMVSD 226

Query: 180 SISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTG--FLSNVVISSSIVDAYAKCGELS 237
            I  +E++   +L  C  L +++L + VHG +   G  + SN+++S++++D Y KC E  
Sbjct: 227 GIEPDEYTVLSLLVCCGHLSDIRLGKGVHGWIERRGPVYSSNLILSNALLDMYFKCKESG 286

Query: 238 DARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGL 297
            A+R FD    +D+ +W TMV G+ +LGDME+A  +F++MP+++ VSW +L+ GY++ G 
Sbjct: 287 LAKRAFDAMKKKDMRSWNTMVVGFVRLGDMEAAQAVFDQMPKRDLVSWNSLLFGYSKKGC 346

Query: 298 GQKAL-ELFTRMMIL-RIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVM 355
            Q+ + ELF  M I+ +++P++ T  S +   A+   L HG+ VHG +IR   + +  + 
Sbjct: 347 DQRTVRELFYEMTIVEKVKPDRVTMVSLISGAANNGELSHGRWVHGLVIRLQLKGDAFLS 406

Query: 356 SSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSV 415
           S+LIDMY KCG +     VF  T  +++  LW +MI+ L  HG  +QA++LF  M    V
Sbjct: 407 SALIDMYCKCGIIERAFMVFK-TATEKDVALWTSMITGLAFHGNGQQALQLFGRMQEEGV 465

Query: 416 KPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLM 475
            P+ +TL  +L AC+HSGLV+EGL  F  M    G  P  EH+  L++LL +AG  ++  
Sbjct: 466 TPNNVTLLAVLTACSHSGLVEEGLHVFNHMKDKFGFDPETEHYGSLVDLLCRAGRVEEAK 525

Query: 476 NQLE-KMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSAL 534
           + ++ KMP      +W ++   CR   +I+     + +L+   P+    + LLS+IY+ +
Sbjct: 526 DIVQKKMPMRPSQSMWGSILSACRGGEDIETAELALTELLKLEPEKEGGYVLLSNIYATV 585

Query: 535 GKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSL-HPMRDVLYSVLEQLAGQ 593
           G+    +K R+ +  R  KK    S +     +H F  ++   HP    +  +L+ L  +
Sbjct: 586 GRWGYSDKTREAMENRGVKKTAGYSSVVGVEGLHRFVAAEKQNHPRWTEIKRILQHLYNE 645

Query: 594 MGEDAPSLD 602
           M    P LD
Sbjct: 646 M---KPKLD 651



 Score =  145 bits (365), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 99/367 (26%), Positives = 171/367 (46%), Gaps = 42/367 (11%)

Query: 35  EAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPT----TFL 90
           EA+     +   GI     T+  +L  C     ++LGK VH      +R+ P       L
Sbjct: 215 EALKLYFKMVSDGIEPDEYTVLSLLVCCGHLSDIRLGKGVH---GWIERRGPVYSSNLIL 271

Query: 91  SNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDV 150
           SN L+ MYFKC     A++ FD +  K++ S+N M+ G+  LG M+ A+ +FD M +RD+
Sbjct: 272 SNALLDMYFKCKESGLAKRAFDAMKKKDMRSWNTMVVGFVRLGDMEAAQAVFDQMPKRDL 331

Query: 151 VSWNTMIIGYAKSGAVEEGLK--FYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVH 208
           VSWN+++ GY+K G  +  ++  FY++     +  +  +   +++      EL   R VH
Sbjct: 332 VSWNSLLFGYSKKGCDQRTVRELFYEMTIVEKVKPDRVTMVSLISGAANNGELSHGRWVH 391

Query: 209 GQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDME 268
           G V+      +  +SS+++D Y KCG +  A  +F     +DV  WT+M++G A  G+  
Sbjct: 392 GLVIRLQLKGDAFLSSALIDMYCKCGIIERAFMVFKTATEKDVALWTSMITGLAFHGN-- 449

Query: 269 SASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACA 328
                                        GQ+AL+LF RM    + PN  T  + L AC+
Sbjct: 450 -----------------------------GQQALQLFGRMQEEGVTPNNVTLLAVLTACS 480

Query: 329 SIVSLKHGKQVHGFLI-RTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLT-DNKENSML 386
               ++ G  V   +  +  F   T    SL+D+  + G + + + +       + +  +
Sbjct: 481 HSGLVEEGLHVFNHMKDKFGFDPETEHYGSLVDLLCRAGRVEEAKDIVQKKMPMRPSQSM 540

Query: 387 WNTMISA 393
           W +++SA
Sbjct: 541 WGSILSA 547


>gi|297741566|emb|CBI32698.3| unnamed protein product [Vitis vinifera]
          Length = 493

 Score =  306 bits (785), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 152/475 (32%), Positives = 267/475 (56%), Gaps = 35/475 (7%)

Query: 145 MAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLT 204
           M ER+VVSW ++I GY+++G     L+FY  + +  +  ++F+F  I+  C  L ++ L 
Sbjct: 1   MPERNVVSWTSVIAGYSQNGQGGNALEFYFQMLQSGVMPDQFTFGSIIKACSSLGDIGLG 60

Query: 205 RQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKL 264
           RQ+H  VL + F ++++  ++++  Y K   + DA  +F     RD+++W +M++G+++L
Sbjct: 61  RQLHAHVLKSEFGAHIIAQNALISMYTKSNLIIDALDVFSRMATRDLISWGSMIAGFSQL 120

Query: 265 GDMESASKLFNEMPEK---NPVSWTTLIAGYT---------------------------- 293
           G    A   F EM  +   + V+W  +IAG+                             
Sbjct: 121 GYELEALCYFKEMLHQGRPDLVAWNAIIAGFAYGELRDAIFFFEEMRCNADLVSWNAILT 180

Query: 294 ---RNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRS 350
              R+   ++   L   M I + RP+  T ++ L A A  VS++ G QVH + ++T    
Sbjct: 181 ACMRHDQAEEVFRLLKLMCISQHRPDYITLTNVLGASAETVSIEIGNQVHCYALKTGLNC 240

Query: 351 NTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDM 410
           +T V + LID+Y+KCG L    ++FD   N +  + W+++I    Q GY E+A++LF  M
Sbjct: 241 DTSVTNGLIDLYAKCGSLKTAHKIFDSMINPD-VVSWSSLILGYAQFGYGEEALKLFKTM 299

Query: 411 VRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGC 470
            R  VKP+ +T   +L AC+H GLV+EG   + +M  + GI P +EH +C+++LLA+AGC
Sbjct: 300 RRLDVKPNHVTFVGVLTACSHVGLVEEGWKLYGTMEKEFGIAPTREHCSCMVDLLARAGC 359

Query: 471 SDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSI 530
            ++    + +M ++ D  +W  L   C+ HGN+D+G++  + ++  +P +SA H LL +I
Sbjct: 360 LNEAEGFIHQMAFDPDIVVWKTLLAACKTHGNVDVGKRAAENILKIDPSNSAAHVLLCNI 419

Query: 531 YSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYS 585
           Y++ G    V ++R L+ +R  +K    SWIE+++++H F V DSLHP R+ +Y+
Sbjct: 420 YASKGNWEDVARLRSLMKQRGVRKVPGQSWIEVKDRIHVFFVEDSLHPERNKIYT 474



 Score =  143 bits (360), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 113/482 (23%), Positives = 210/482 (43%), Gaps = 87/482 (18%)

Query: 21  IQSFLSLIS----KGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHL 76
           + S+ S+I+     GQ   A+     + Q G+     T   I++ C+    + LG+++H 
Sbjct: 6   VVSWTSVIAGYSQNGQGGNALEFYFQMLQSGVMPDQFTFGSIIKACSSLGDIGLGRQLHA 65

Query: 77  HLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMK 136
           H+ L           N LISMY K    +DA  VF ++  ++L S+ +M++G++ LG   
Sbjct: 66  HV-LKSEFGAHIIAQNALISMYTKSNLIIDALDVFSRMATRDLISWGSMIAGFSQLGYEL 124

Query: 137 HARNLFDNMAER---DVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNE--FSFAGI 191
            A   F  M  +   D+V+WN +I G+A  G + + + F++ +R     CN    S+  I
Sbjct: 125 EALCYFKEMLHQGRPDLVAWNAIIAGFAY-GELRDAIFFFEEMR-----CNADLVSWNAI 178

Query: 192 LTICVKLEE-----------------------------------LKLTRQVHGQVLVTGF 216
           LT C++ ++                                   +++  QVH   L TG 
Sbjct: 179 LTACMRHDQAEEVFRLLKLMCISQHRPDYITLTNVLGASAETVSIEIGNQVHCYALKTGL 238

Query: 217 LSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNE 276
             +  +++ ++D YAKCG L  A ++FD     DV++W++++ GYA+ G           
Sbjct: 239 NCDTSVTNGLIDLYAKCGSLKTAHKIFDSMINPDVVSWSSLILGYAQFG----------- 287

Query: 277 MPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHG 336
                                G++AL+LF  M  L ++PN  TF   L AC+ +  ++ G
Sbjct: 288 --------------------YGEEALKLFKTMRRLDVKPNHVTFVGVLTACSHVGLVEEG 327

Query: 337 KQVHGFLIRT-NFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALT 395
            +++G + +           S ++D+ ++ GCLN+            + ++W T+++A  
Sbjct: 328 WKLYGTMEKEFGIAPTREHCSCMVDLLARAGCLNEAEGFIHQMAFDPDIVVWKTLLAACK 387

Query: 396 QHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGI--IP 453
            HG  +   R   ++++  + P      V+L     S    E +    S+    G+  +P
Sbjct: 388 THGNVDVGKRAAENILK--IDPSNSAAHVLLCNIYASKGNWEDVARLRSLMKQRGVRKVP 445

Query: 454 NQ 455
            Q
Sbjct: 446 GQ 447



 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 73/299 (24%), Positives = 131/299 (43%), Gaps = 31/299 (10%)

Query: 32  QLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLS 91
           Q  E    L L+     R    TL  +L   AE+ S+++G +VH +   T     T+ ++
Sbjct: 187 QAEEVFRLLKLMCISQHRPDYITLTNVLGASAETVSIEIGNQVHCYALKTGLNCDTS-VT 245

Query: 92  NHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDV- 150
           N LI +Y KCGS   A K+FD +   ++ S+++++ GYA  G  + A  LF  M   DV 
Sbjct: 246 NGLIDLYAKCGSLKTAHKIFDSMINPDVVSWSSLILGYAQFGYGEEALKLFKTMRRLDVK 305

Query: 151 ---VSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTR-- 205
              V++  ++   +  G VEEG K Y  + +      EF  A     C  + +L L R  
Sbjct: 306 PNHVTFVGVLTACSHVGLVEEGWKLYGTMEK------EFGIAPTREHCSCMVDL-LARAG 358

Query: 206 ---QVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFD---ETDARDVLTWTTMVS 259
              +  G +    F  ++V+  +++ A    G +   +R  +   + D  +      + +
Sbjct: 359 CLNEAEGFIHQMAFDPDIVVWKTLLAACKTHGNVDVGKRAAENILKIDPSNSAAHVLLCN 418

Query: 260 GYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQH 318
            YA  G+ E  ++L + M ++             R   GQ  +E+  R+ +  +  + H
Sbjct: 419 IYASKGNWEDVARLRSLMKQRG-----------VRKVPGQSWIEVKDRIHVFFVEDSLH 466


>gi|297848224|ref|XP_002891993.1| hypothetical protein ARALYDRAFT_337864 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297337835|gb|EFH68252.1| hypothetical protein ARALYDRAFT_337864 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 950

 Score =  306 bits (785), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 176/575 (30%), Positives = 297/575 (51%), Gaps = 74/575 (12%)

Query: 92  NHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVV 151
           N ++S YF  G   +AR++FD++P +N+ S+N ++SGY    M++ ARN+F+ M ER+VV
Sbjct: 52  NSIVSGYFANGLPREARQMFDEMPERNIVSWNGLVSGYIKNRMIEEARNVFEIMPERNVV 111

Query: 152 SWNTMIIGYAKSG-AVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQ 210
           SW  M+ GY + G  VE  L F+++  R  +S     F G++      +  KL   + G+
Sbjct: 112 SWTAMVKGYVQEGMVVEAELLFWRMPERNEVSWT-VMFGGLIDGGRIDDARKLYDMMPGK 170

Query: 211 VLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLT----------------- 253
                   +VV S++++    + G + +AR +FDE   R+V+T                 
Sbjct: 171 --------DVVASTNMIGGLCREGRVDEAREIFDEMRERNVITWTTMITGYGQNKRVDVA 222

Query: 254 --------------WTTMVSGY-------------------------------AKLGDME 268
                         WT+M+ GY                                ++G++ 
Sbjct: 223 RKLFEVMPEKTEVSWTSMLLGYTLSGRIEDAEEFFEVMPMKPVIACNAMIVALGEVGEIV 282

Query: 269 SASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACA 328
            A ++F++M +++  +W  +I  Y R G   +ALELF +M    +RP+  +  S L  CA
Sbjct: 283 KARRVFDQMEDRDNATWRGMIKAYERKGFELEALELFAQMQRQGVRPSFPSLISILSVCA 342

Query: 329 SIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWN 388
           ++ SL++G+QVH  L+R  F  +  V S L+ MY KCG L   + VFD   +K + ++WN
Sbjct: 343 TLASLQYGRQVHAHLVRCQFDGDVYVASVLMTMYVKCGELVKAKLVFDRFPSK-DIIMWN 401

Query: 389 TMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHD 448
           ++IS    HG  E+A+++FH+M  S   P+K+TL  IL AC++ G ++EGL  FESM   
Sbjct: 402 SIISGYASHGLGEEALKVFHEMPLSGTMPNKVTLIAILTACSYGGKLEEGLEIFESMESK 461

Query: 449 LGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRK 508
             + P  EH++C +++L +AG  D+ M  +  M  + D+ +W AL G C+ H  +D+   
Sbjct: 462 FCVTPTVEHYSCTVDMLGRAGKVDKAMELINSMTIKPDATVWGALLGACKTHSRLDLAEV 521

Query: 509 VVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVH 568
              +L +  P+++  + LLSSI ++  K   V ++R+ +  +   K    SWIE+  KVH
Sbjct: 522 AAKKLFEIEPENAGPYILLSSINASRSKWGDVAEMRKNMRTKNVSKFPGCSWIEVGKKVH 581

Query: 569 AFSVSD-SLHPMRDVLYSVLEQLAGQMGEDAPSLD 602
            F+      HP + ++  +LE+  G + E   S D
Sbjct: 582 MFTRGGIRNHPEQAMILMMLEKTDGLLREAGYSPD 616



 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 112/388 (28%), Positives = 190/388 (48%), Gaps = 66/388 (17%)

Query: 76  LHLKLTQRKTPTTFLSNHL-ISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGM 134
           L L L +  + +T ++N   IS   + G   +ARK FD +  K + S+N+++SGY   G+
Sbjct: 4   LKLILHRAYSTSTGVNNSFEISRLSRIGQINEARKFFDSLRYKAIGSWNSIVSGYFANGL 63

Query: 135 MKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTI 194
            + AR +FD M ER++VSWN ++ GY K+  +EE    ++++   ++        G +  
Sbjct: 64  PREARQMFDEMPERNIVSWNGLVSGYIKNRMIEEARNVFEIMPERNVVSWTAMVKGYVQE 123

Query: 195 CVKLE-ELKLTR-----QVHGQVLVTGFL-----------------SNVVISSSIVDAYA 231
            + +E EL   R     +V   V+  G +                  +VV S++++    
Sbjct: 124 GMVVEAELLFWRMPERNEVSWTVMFGGLIDGGRIDDARKLYDMMPGKDVVASTNMIGGLC 183

Query: 232 KCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAG 291
           + G + +AR +FDE   R+V+TWTTM++GY +   ++ A KLF  MPEK  VSWT+++ G
Sbjct: 184 REGRVDEAREIFDEMRERNVITWTTMITGYGQNKRVDVARKLFEVMPEKTEVSWTSMLLG 243

Query: 292 YTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCAC-ASIVSLKHGKQVHGFLIRTNFRS 350
           YT +G  + A E F    ++ ++P        + AC A IV+L                 
Sbjct: 244 YTLSGRIEDAEEFFE---VMPMKP--------VIACNAMIVAL----------------- 275

Query: 351 NTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDM 410
                        + G +   R+VFD  ++++N+  W  MI A  + G++ +A+ LF  M
Sbjct: 276 ------------GEVGEIVKARRVFDQMEDRDNAT-WRGMIKAYERKGFELEALELFAQM 322

Query: 411 VRSSVKPDKITLAVILNACTHSGLVQEG 438
            R  V+P   +L  IL+ C     +Q G
Sbjct: 323 QRQGVRPSFPSLISILSVCATLASLQYG 350



 Score = 79.0 bits (193), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 47/145 (32%), Positives = 83/145 (57%), Gaps = 8/145 (5%)

Query: 37  ISSLDLLAQ---RGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNH 93
           + +L+L AQ   +G+R    +L  IL  CA   SL+ G++VH HL   Q      ++++ 
Sbjct: 313 LEALELFAQMQRQGVRPSFPSLISILSVCATLASLQYGRQVHAHLVRCQFDG-DVYVASV 371

Query: 94  LISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNM----AERD 149
           L++MY KCG  V A+ VFD+ P K++  +N+++SGYA+ G+ + A  +F  M       +
Sbjct: 372 LMTMYVKCGELVKAKLVFDRFPSKDIIMWNSIISGYASHGLGEEALKVFHEMPLSGTMPN 431

Query: 150 VVSWNTMIIGYAKSGAVEEGLKFYK 174
            V+   ++   +  G +EEGL+ ++
Sbjct: 432 KVTLIAILTACSYGGKLEEGLEIFE 456


>gi|297794983|ref|XP_002865376.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297311211|gb|EFH41635.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 658

 Score =  306 bits (785), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 156/465 (33%), Positives = 263/465 (56%), Gaps = 5/465 (1%)

Query: 134 MMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILT 193
           M  + R + + +  R+   W  +I GY   G  +E +  Y  +R+  I+   F+F+ +L 
Sbjct: 99  MDPYPRRVIEPVQFRNPFLWTAVIRGYTIEGKFDEAIAMYGCMRKEEITPVSFTFSALLK 158

Query: 194 ICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLT 253
            C  + +L L RQ H Q         V + ++++D Y KCG +  AR++FDE   RDV++
Sbjct: 159 ACGSMGDLNLGRQFHAQTFRLRGFCFVYVGNTMIDMYVKCGSIVCARKVFDEMPERDVIS 218

Query: 254 WTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRI 313
           WT +++ YA++G+MESA+ LF  +P K+ V+WT ++ G+ +N   Q+ALE F RM    I
Sbjct: 219 WTELIAAYARVGNMESAADLFESLPTKDMVAWTAMVTGFAQNAKPQEALEYFDRMEKSGI 278

Query: 314 RPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNF--RSNTIVMSSLIDMYSKCGCLNDG 371
           R ++ T +  + ACA + + K+  +      ++ +    + ++ S+LIDMYSKCG + + 
Sbjct: 279 RADEVTVAGYISACAQLGASKYADRAVQIAQKSGYSPSDHVVIGSALIDMYSKCGNVEEA 338

Query: 372 RQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMV-RSSVKPDKITLAVILNACT 430
             VF ++ N +N   +++MI  L  HG  ++A+ LFH MV ++++KP+ +T    L AC+
Sbjct: 339 VNVF-VSMNNKNVFSYSSMILGLATHGRAQEALDLFHYMVTQTAIKPNTVTFVGALTACS 397

Query: 431 HSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLW 490
           HSGLV +G   F SM    G+ P ++H+ C+++LL +AG   + +  ++ M  E    +W
Sbjct: 398 HSGLVDQGRQVFASMYQTFGVEPTRDHYTCMVDLLGRAGRLQEALELIKTMSVEPHGGVW 457

Query: 491 NALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINER 550
            AL G CRIH N D+     + L +  P     + LLS++YS+ G    V  VR+LI E+
Sbjct: 458 GALLGACRIHNNPDIAEIAAEHLFELEPDIIGNYILLSNVYSSAGDWGGVLSVRKLIKEK 517

Query: 551 QFKKEQAISWIEIEN-KVHAFSVSDSLHPMRDVLYSVLEQLAGQM 594
             KK  A+SW+  +N ++H F   +  HPM   +   LE+L  ++
Sbjct: 518 GLKKTPAVSWVVDKNGQMHKFFPGNLNHPMSKKIQDKLEELVERL 562



 Score =  155 bits (392), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 93/372 (25%), Positives = 182/372 (48%), Gaps = 36/372 (9%)

Query: 30  KGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTF 89
           +G+  EAI+    + +  I   + T + +L+ C     L LG++ H       R     +
Sbjct: 128 EGKFDEAIAMYGCMRKEEITPVSFTFSALLKACGSMGDLNLGRQFHAQ-TFRLRGFCFVY 186

Query: 90  LSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERD 149
           + N +I MY KCGS V ARKVFD++P +++ S+  +++ YA +G M+ A +LF+++  +D
Sbjct: 187 VGNTMIDMYVKCGSIVCARKVFDEMPERDVISWTELIAAYARVGNMESAADLFESLPTKD 246

Query: 150 VVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHG 209
           +V+W  M+ G+A++   +E L+++  + +  I  +E + AG ++ C +L   K   +   
Sbjct: 247 MVAWTAMVTGFAQNAKPQEALEYFDRMEKSGIRADEVTVAGYISACAQLGASKYADRAVQ 306

Query: 210 QVLVTGF--LSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDM 267
               +G+    +VVI S+++D Y+KCG + +A  +F   + ++V ++++M+ G A     
Sbjct: 307 IAQKSGYSPSDHVVIGSALIDMYSKCGNVEEAVNVFVSMNNKNVFSYSSMILGLAT---- 362

Query: 268 ESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMI-LRIRPNQHTFSSCLCA 326
                                      +G  Q+AL+LF  M+    I+PN  TF   L A
Sbjct: 363 ---------------------------HGRAQEALDLFHYMVTQTAIKPNTVTFVGALTA 395

Query: 327 CASIVSLKHGKQVHGFLIRT-NFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSM 385
           C+    +  G+QV   + +T          + ++D+  + G L +  ++      + +  
Sbjct: 396 CSHSGLVDQGRQVFASMYQTFGVEPTRDHYTCMVDLLGRAGRLQEALELIKTMSVEPHGG 455

Query: 386 LWNTMISALTQH 397
           +W  ++ A   H
Sbjct: 456 VWGALLGACRIH 467



 Score = 49.7 bits (117), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 45/195 (23%), Positives = 80/195 (41%), Gaps = 5/195 (2%)

Query: 321 SSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLND--GRQVFDLT 378
           SS +      ++L   KQ+HG ++R     +  +++ LI   +K G   D   R+V +  
Sbjct: 51  SSLISKLDDCINLNQIKQIHGHVLRKGLDQSCYILTKLIRTLTKLGVPMDPYPRRVIEPV 110

Query: 379 DNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEG 438
             + N  LW  +I   T  G  ++AI ++  M +  + P   T + +L AC   G +  G
Sbjct: 111 QFR-NPFLWTAVIRGYTIEGKFDEAIAMYGCMRKEEITPVSFTFSALLKACGSMGDLNLG 169

Query: 439 LTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCR 498
              F + T  L           +I++  + G         ++MP E D   W  L     
Sbjct: 170 -RQFHAQTFRLRGFCFVYVGNTMIDMYVKCGSIVCARKVFDEMP-ERDVISWTELIAAYA 227

Query: 499 IHGNIDMGRKVVDQL 513
             GN++    + + L
Sbjct: 228 RVGNMESAADLFESL 242


>gi|449500331|ref|XP_004161068.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At2g33680-like [Cucumis sativus]
          Length = 710

 Score =  306 bits (785), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 174/527 (33%), Positives = 275/527 (52%), Gaps = 64/527 (12%)

Query: 71  GKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYA 130
           GK++H  L L         + N L++MY KCG   DA K F+             LSG  
Sbjct: 233 GKQIHC-LALKNGLLSIASVGNALVTMYGKCGCLDDALKTFE-------------LSG-- 276

Query: 131 NLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAG 190
                           ++D ++W+ MI GYA++G   E L  +  +       +EF+F G
Sbjct: 277 ----------------DKDDITWSAMITGYAQAGDSHEALNLFYNMHLNGNKPSEFTFVG 320

Query: 191 ILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARD 250
           ++  C  +  L+  +Q+HG  L  G+   +   +++VD YAKC                 
Sbjct: 321 VINACSDIGALEEGKQIHGYSLKAGYECQIYFMTALVDMYAKC----------------- 363

Query: 251 VLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMI 310
                         G +  A K F+ + E + V WT++I+GY +NG  + AL L+ RM +
Sbjct: 364 --------------GSLVDARKGFDYLKEPDIVLWTSMISGYAQNGENETALTLYCRMQM 409

Query: 311 LRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLND 370
            RI P++ T +S L AC+S+ +L+ GKQ+H   I+  F     + S+L  MY+KCG L D
Sbjct: 410 ERIMPHELTMASVLRACSSLAALEQGKQIHAQTIKYGFSLEVPIGSALSTMYAKCGSLED 469

Query: 371 GRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACT 430
           G  VF    +++  M WN MIS L+Q+G   +A+ LF ++   + KPD +T   +L+AC+
Sbjct: 470 GNLVFRRMPSRD-IMTWNAMISGLSQNGEGLKALELFEELRHGTTKPDYVTFVNVLSACS 528

Query: 431 HSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLW 490
           H GLV+ G  YF  M  + GI+P  EH+AC++++L++AG   +    +E    +H   LW
Sbjct: 529 HMGLVERGKVYFRMMLDEFGIVPRVEHYACMVDILSRAGKLHETKEFIESATIDHGMCLW 588

Query: 491 NALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINER 550
             L G CR + N ++G    ++L++   Q S+ + LLSSIY+ALG+   VE+VR+L+  R
Sbjct: 589 RILLGACRNYRNYELGAYAGEKLMELGSQESSAYILLSSIYTALGRSDDVERVRRLMKLR 648

Query: 551 QFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQMGED 597
              KE   SWIE++++VH F V D +HP    + S L +L   M ++
Sbjct: 649 GVNKEPGCSWIELKSQVHVFVVGDQIHPQIVKICSELRRLRDHMKDE 695



 Score =  165 bits (418), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 108/393 (27%), Positives = 185/393 (47%), Gaps = 68/393 (17%)

Query: 50  LPAETLAFI--LQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDA 107
           LP +  +F+  L +C   K L+ GK +H  L L      + +L+N L+++Y KCGS V A
Sbjct: 6   LPPQHRSFVDLLLRCTRQKDLQKGKAIHAQL-LRTGSFSSVYLTNSLVNLYAKCGSIVKA 64

Query: 108 RKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVE 167
           + V                               F+++  +DVVSWN +I GY++ G V 
Sbjct: 65  KLV-------------------------------FESITNKDVVSWNCLINGYSQKGTVG 93

Query: 168 EG--LKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSS 225
               ++ ++ +R  +   N  +F+G+ T      E     Q H   + T    +V + SS
Sbjct: 94  YSFVMELFQRMRAENTLPNGHTFSGVFTAASSSPETFGGLQAHALAIKTSNFYDVFVGSS 153

Query: 226 IVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSW 285
           +++ Y                                K+G M  A K+F+ +PE+N VSW
Sbjct: 154 LINMYC-------------------------------KIGCMLDARKVFDTIPERNTVSW 182

Query: 286 TTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIR 345
            T+I+GY    +  +A ELF  M       ++  ++S L A      + +GKQ+H   ++
Sbjct: 183 ATIISGYAMERMAFEAWELFXLMRREEGAHDKFIYTSVLSALTVPDLVHYGKQIHCLALK 242

Query: 346 TNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIR 405
               S   V ++L+ MY KCGCL+D  + F+L+ +K++ + W+ MI+   Q G   +A+ 
Sbjct: 243 NGLLSIASVGNALVTMYGKCGCLDDALKTFELSGDKDD-ITWSAMITGYAQAGDSHEALN 301

Query: 406 LFHDMVRSSVKPDKITLAVILNACTHSGLVQEG 438
           LF++M  +  KP + T   ++NAC+  G ++EG
Sbjct: 302 LFYNMHLNGNKPSEFTFVGVINACSDIGALEEG 334



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 90/307 (29%), Positives = 144/307 (46%), Gaps = 32/307 (10%)

Query: 187 SFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDET 246
           SF  +L  C + ++L+  + +H Q+L TG  S+V +++S+V+ YAKCG +  A+ +F+  
Sbjct: 12  SFVDLLLRCTRQKDLQKGKAIHAQLLRTGSFSSVYLTNSLVNLYAKCGSIVKAKLVFESI 71

Query: 247 DARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFT 306
             +DV++W  +++GY++ G +                       GY+        +ELF 
Sbjct: 72  TNKDVVSWNCLINGYSQKGTV-----------------------GYSF------VMELFQ 102

Query: 307 RMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCG 366
           RM      PN HTFS    A +S      G Q H   I+T+   +  V SSLI+MY K G
Sbjct: 103 RMRAENTLPNGHTFSGVFTAASSSPETFGGLQAHALAIKTSNFYDVFVGSSLINMYCKIG 162

Query: 367 CLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVIL 426
           C+ D R+VFD T  + N++ W T+IS         +A  LF  M R     DK     +L
Sbjct: 163 CMLDARKVFD-TIPERNTVSWATIISGYAMERMAFEAWELFXLMRREEGAHDKFIYTSVL 221

Query: 427 NACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHD 486
           +A T   LV  G      +    G++        L+ +  + GC D  +   E +  + D
Sbjct: 222 SALTVPDLVHYG-KQIHCLALKNGLLSIASVGNALVTMYGKCGCLDDALKTFE-LSGDKD 279

Query: 487 SYLWNAL 493
              W+A+
Sbjct: 280 DITWSAM 286



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 89/346 (25%), Positives = 152/346 (43%), Gaps = 67/346 (19%)

Query: 51  PAE-TLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARK 109
           P+E T   ++  C++  +L+ GK++H +      +    F++  L+ MY KCGS VDARK
Sbjct: 313 PSEFTFVGVINACSDIGALEEGKQIHGYSLKAGYECQIYFMTA-LVDMYAKCGSLVDARK 371

Query: 110 VFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEG 169
            FD +   ++  + +M+SG                               YA++G  E  
Sbjct: 372 GFDYLKEPDIVLWTSMISG-------------------------------YAQNGENETA 400

Query: 170 LKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDA 229
           L  Y  ++   I  +E + A +L  C  L  L+  +Q+H Q +  GF   V I S++   
Sbjct: 401 LTLYCRMQMERIMPHELTMASVLRACSSLAALEQGKQIHAQTIKYGFSLEVPIGSALSTM 460

Query: 230 YAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLI 289
           YAKCG L D   +F    +RD++TW  M+SG                             
Sbjct: 461 YAKCGSLEDGNLVFRRMPSRDIMTWNAMISG----------------------------- 491

Query: 290 AGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFR 349
              ++NG G KALELF  +     +P+  TF + L AC+ +  ++ GK V+  ++   F 
Sbjct: 492 --LSQNGEGLKALELFEELRHGTTKPDYVTFVNVLSACSHMGLVERGK-VYFRMMLDEFG 548

Query: 350 SNTIV--MSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISA 393
               V   + ++D+ S+ G L++ ++  +         LW  ++ A
Sbjct: 549 IVPRVEHYACMVDILSRAGKLHETKEFIESATIDHGMCLWRILLGA 594



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 50/193 (25%), Positives = 88/193 (45%), Gaps = 16/193 (8%)

Query: 309 MILRIRPNQH-TFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGC 367
           M L + P QH +F   L  C     L+ GK +H  L+RT   S+  + +SL+++Y+KCG 
Sbjct: 1   MNLYLLPPQHRSFVDLLLRCTRQKDLQKGKAIHAQLLRTGSFSSVYLTNSLVNLYAKCGS 60

Query: 368 LNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQA--IRLFHDMVRSSVKPDKITLAVI 425
           +   + VF+   NK+  + WN +I+  +Q G    +  + LF  M   +  P+  T + +
Sbjct: 61  IVKAKLVFESITNKD-VVSWNCLINGYSQKGTVGYSFVMELFQRMRAENTLPNGHTFSGV 119

Query: 426 LNACTHS-----GLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEK 480
             A + S     GL    L    S  +D+ +       + LI +  + GC        + 
Sbjct: 120 FTAASSSPETFGGLQAHALAIKTSNFYDVFV------GSSLINMYCKIGCMLDARKVFDT 173

Query: 481 MPYEHDSYLWNAL 493
           +P E ++  W  +
Sbjct: 174 IP-ERNTVSWATI 185


>gi|356561464|ref|XP_003549001.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g49142-like [Glycine max]
          Length = 673

 Score =  306 bits (785), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 161/509 (31%), Positives = 272/509 (53%), Gaps = 38/509 (7%)

Query: 125 MLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCN 184
           ++  YA  G    ARN+FD + ER+V+ +N MI  Y  +   ++ L  ++ +     S +
Sbjct: 73  LMRAYAARGEPGLARNVFDVIPERNVIFYNVMIRSYMNNHLYDDALLVFRDMVSGGFSPD 132

Query: 185 EFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFD 244
            +++  +L  C   + L++  Q+HG V   G   N+ + + ++  Y KCG L +AR + D
Sbjct: 133 HYTYPCVLKACSCSDNLRIGLQLHGAVFKVGLDLNLFVGNGLIALYGKCGCLPEARCVLD 192

Query: 245 ETDARDVLTWTTMVSGYAKLGDMESA---------------------------------- 270
           E  ++DV++W +MV+GYA+    + A                                  
Sbjct: 193 EMQSKDVVSWNSMVAGYAQNMQFDDALDICREMDGVRQKPDACTMASLLPAVTNTSSENV 252

Query: 271 ---SKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCAC 327
               ++F  + +K+ VSW  +I+ Y +N +  K+++L+ +M    + P+  T +S L AC
Sbjct: 253 LYVEEMFMNLEKKSLVSWNVMISVYMKNSMPGKSVDLYLQMGKCEVEPDAITCASVLRAC 312

Query: 328 ASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLW 387
             + +L  G+++H ++ R     N ++ +SLIDMY++CGCL D ++VFD    ++ +  W
Sbjct: 313 GDLSALLLGRRIHEYVERKKLCPNMLLENSLIDMYARCGCLEDAKRVFDRMKFRDVAS-W 371

Query: 388 NTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTH 447
            ++ISA    G    A+ LF +M  S   PD I    IL+AC+HSGL+ EG  YF+ MT 
Sbjct: 372 TSLISAYGMTGQGYNAVALFTEMQNSGQSPDSIAFVAILSACSHSGLLNEGKFYFKQMTD 431

Query: 448 DLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGR 507
           D  I P  EH ACL++LL ++G  D+  N +++MP + +  +W AL   CR++ N+D+G 
Sbjct: 432 DYKITPIIEHFACLVDLLGRSGRVDEAYNIIKQMPMKPNERVWGALLSSCRVYSNMDIGI 491

Query: 508 KVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKV 567
              D+L+   P+ S  + LLS+IY+  G+   V  +R L+  R+ +K   IS +E+ N+V
Sbjct: 492 LAADKLLQLAPEESGYYVLLSNIYAKAGRWTEVTAIRSLMKRRRIRKMPGISNVELNNQV 551

Query: 568 HAFSVSDSLHPMRDVLYSVLEQLAGQMGE 596
           H F   D+ HP    +Y  L  L G+M E
Sbjct: 552 HTFLAGDTYHPQSKEIYEELSVLVGKMKE 580


>gi|357516905|ref|XP_003628741.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355522763|gb|AET03217.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 758

 Score =  306 bits (784), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 172/536 (32%), Positives = 271/536 (50%), Gaps = 64/536 (11%)

Query: 118 NLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLR 177
           N F   N ++  +    + HAR LFD + + +  +WN M  GY ++G   + +  +  L 
Sbjct: 43  NDFVAPNFITTCSRFKRIHHARKLFDKIPQPNTATWNAMFRGYLQNGHHRDTVVLFGELN 102

Query: 178 RFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAK----- 232
           R +   N F+F  I+  C KLE ++   +VH      GF SN  +++S++D Y+K     
Sbjct: 103 RIAGMPNCFTFPMIIKSCGKLEGVREGEEVHCCATKHGFKSNSFVATSLIDMYSKKGCVE 162

Query: 233 --------------------------CGELSDARRLFDETDARDVLTWTTMVSGY----- 261
                                     CG++   RRLFD    RDV+ W+ ++SGY     
Sbjct: 163 DAYKVFGEMHERNVVVWTAIINGYILCGDVVSGRRLFDLAPERDVVMWSVLISGYIESKN 222

Query: 262 --------------------------AKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRN 295
                                     A  G++E   K+F+EMPE+N  SW  LI GY +N
Sbjct: 223 MAAARELFDKMPNRDTMSWNAMLNGYAVNGEVEMFEKVFDEMPERNVFSWNGLIGGYVKN 282

Query: 296 GLGQKALELFTRMMIL-RIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIV 354
           GL  + LE F RM++   + PN  T  + L AC+ + +L  GK VH +     ++ N  V
Sbjct: 283 GLFSETLESFKRMLVEGHVIPNDFTLVAVLSACSRLGALDMGKWVHVYAESIGYKGNLFV 342

Query: 355 MSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSS 414
            + LIDMY+KCG + +   VF+  D K+  + WNT+I+ L  HG+   A+ +F  M    
Sbjct: 343 GNVLIDMYAKCGVIENAVVVFNCLDRKD-IISWNTIINGLAIHGHAPDALGMFDRMKSEG 401

Query: 415 VKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQL 474
            +PD +T   IL+ACTH GLV++G  YF+SM     I+P  EH+ C+++LL +AG  DQ 
Sbjct: 402 EEPDGVTFVGILSACTHMGLVKDGFLYFKSMVDHYSIVPQIEHYGCMVDLLGRAGLLDQA 461

Query: 475 MNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSAL 534
           +N + KMP E D+ +W AL G CR++ N+++    + +LI+  P + A   ++S+IY  L
Sbjct: 462 LNFIRKMPIEPDAVIWAALLGACRLYKNVEIAELALQRLIELEPNNPANFVMVSNIYKDL 521

Query: 535 GKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQL 590
           G+   V +++  + +  F+K    S IE  + V  F   D  H   + +Y VL+ L
Sbjct: 522 GRSEDVARLKIAMRDTGFRKLPGCSVIECNDSVVEFYSLDERHSETESIYRVLKGL 577



 Score =  132 bits (333), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 93/337 (27%), Positives = 156/337 (46%), Gaps = 66/337 (19%)

Query: 94  LISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSW 153
           LIS Y +  +   AR++FDK+P ++  S+N ML+GYA  G ++    +FD M ER+V SW
Sbjct: 213 LISGYIESKNMAAARELFDKMPNRDTMSWNAMLNGYAVNGEVEMFEKVFDEMPERNVFSW 272

Query: 154 NTMIIGYAKSGAVEEGLK-FYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVL 212
           N +I GY K+G   E L+ F ++L    +  N+F+   +L+ C +L  L + + VH    
Sbjct: 273 NGLIGGYVKNGLFSETLESFKRMLVEGHVIPNDFTLVAVLSACSRLGALDMGKWVHVYAE 332

Query: 213 VTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASK 272
             G+  N+ + + ++D YAKCG + +A  +F+  D +D+++W T+++G A          
Sbjct: 333 SIGYKGNLFVGNVLIDMYAKCGVIENAVVVFNCLDRKDIISWNTIINGLA---------- 382

Query: 273 LFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVS 332
                           I G+  + LG     +F RM      P+  TF   L AC     
Sbjct: 383 ----------------IHGHAPDALG-----MFDRMKSEGEEPDGVTFVGILSACT---- 417

Query: 333 LKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMIS 392
                  H  L++  F    +   S++D YS             +    E+   +  M+ 
Sbjct: 418 -------HMGLVKDGF----LYFKSMVDHYS-------------IVPQIEH---YGCMVD 450

Query: 393 ALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNAC 429
            L + G  +QA+     M    ++PD +  A +L AC
Sbjct: 451 LLGRAGLLDQALNFIRKM---PIEPDAVIWAALLGAC 484



 Score = 89.7 bits (221), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 82/333 (24%), Positives = 136/333 (40%), Gaps = 76/333 (22%)

Query: 185 EFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFD 244
           E  F  +L  C   E L    Q+  Q++  G   N  ++ + +   ++   +  AR+LFD
Sbjct: 12  EEKFITLLRSCKNYERL---HQIQAQIVTHGLEHNDFVAPNFITTCSRFKRIHHARKLFD 68

Query: 245 ETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALEL 304
           +    +  TW  M  GY + G       LF E+           IAG             
Sbjct: 69  KIPQPNTATWNAMFRGYLQNGHHRDTVVLFGEL---------NRIAGM------------ 107

Query: 305 FTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSK 364
                     PN  TF   + +C  +  ++ G++VH    +  F+SN+ V +SLIDMYSK
Sbjct: 108 ----------PNCFTFPMIIKSCGKLEGVREGEEVHCCATKHGFKSNSFVATSLIDMYSK 157

Query: 365 CGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAV 424
            GC+ D  +VF    ++ N ++W  +I+     G      RLF       + P++    V
Sbjct: 158 KGCVEDAYKVFGEM-HERNVVVWTAIINGYILCGDVVSGRRLF------DLAPER---DV 207

Query: 425 ILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYE 484
           ++ +   SG       Y ES           ++ A   EL              +KMP  
Sbjct: 208 VMWSVLISG-------YIES-----------KNMAAAREL-------------FDKMP-N 235

Query: 485 HDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQN 517
            D+  WNA+     ++G ++M  KV D++ ++N
Sbjct: 236 RDTMSWNAMLNGYAVNGEVEMFEKVFDEMPERN 268


>gi|357502061|ref|XP_003621319.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355496334|gb|AES77537.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 605

 Score =  306 bits (784), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 165/475 (34%), Positives = 258/475 (54%), Gaps = 41/475 (8%)

Query: 118 NLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLK-FYKVL 176
           ++F  N+++  Y   G ++ A  +F  M ERDVVSWN+M+ G  K+G ++  LK F ++ 
Sbjct: 158 DIFVPNSLIDCYCRCGDVEMAMKVFSGMEERDVVSWNSMVGGLVKNGDLDGALKVFDEMP 217

Query: 177 RRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGEL 236
            R  +S N                                        +++D + K GE+
Sbjct: 218 ERDRVSWN----------------------------------------TMLDGFTKAGEM 237

Query: 237 SDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNG 296
             A +LF+    RD+++W+TMV GY+K GDM+ A  LF+  P KN V WTT+I+GY   G
Sbjct: 238 DKAFKLFERMAERDIVSWSTMVCGYSKNGDMDMARMLFDRCPVKNLVLWTTIISGYAEKG 297

Query: 297 LGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMS 356
             ++A+ L   M    +R +   F S L ACA    L  GK++H   +R+ FR +T V++
Sbjct: 298 QVKEAMNLCDEMEKSGLRLDDGFFISILAACAESGMLGLGKKMHDSFLRSRFRCSTKVLN 357

Query: 357 SLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVK 416
           S IDMY+KCGC++D  +VF+    +++ + WN+MI     HG+ E++I LF+ MVR   K
Sbjct: 358 SFIDMYAKCGCVDDAFRVFNGMKTEKDLVSWNSMIHGFGIHGHGEKSIELFNTMVREGFK 417

Query: 417 PDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMN 476
           PD+ T   +L ACTH+GLV EG  YF SM    GI+P  EH+ C+++LL + G   +   
Sbjct: 418 PDRYTFIGLLCACTHAGLVNEGRGYFYSMQRVYGIVPQIEHYGCMVDLLGRGGHLKEAFW 477

Query: 477 QLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGK 536
            +  MP+E ++ +   L G CR+H ++ +   V   L    P       LLS+IY+  G 
Sbjct: 478 LVRSMPFEPNAIILGTLLGACRMHNDVKLATSVSKYLFKLVPSDPGNFSLLSNIYAQSGD 537

Query: 537 GRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLA 591
              V KVR+ +N+   +K   +S IE+E +VH F+V D  HP    +Y+++++L 
Sbjct: 538 WINVAKVRKQMNDEGGQKPSGVSSIEVEEEVHEFTVRDWSHPKSGDIYNMIDRLV 592



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 49/154 (31%), Positives = 80/154 (51%), Gaps = 6/154 (3%)

Query: 30  KGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTF 89
           KGQ+ EA++  D + + G+RL       IL  CAES  L LGK++H     ++ +  T  
Sbjct: 296 KGQVKEAMNLCDEMEKSGLRLDDGFFISILAACAESGMLGLGKKMHDSFLRSRFRCSTKV 355

Query: 90  LSNHLISMYFKCGSDVDARKVFDKIPV-KNLFSYNNMLSGYANLGMMKHARNLFDNMAER 148
           L N  I MY KCG   DA +VF+ +   K+L S+N+M+ G+   G  + +  LF+ M   
Sbjct: 356 L-NSFIDMYAKCGCVDDAFRVFNGMKTEKDLVSWNSMIHGFGIHGHGEKSIELFNTMVRE 414

Query: 149 ----DVVSWNTMIIGYAKSGAVEEGLKFYKVLRR 178
               D  ++  ++     +G V EG  ++  ++R
Sbjct: 415 GFKPDRYTFIGLLCACTHAGLVNEGRGYFYSMQR 448



 Score = 47.4 bits (111), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 47/197 (23%), Positives = 81/197 (41%), Gaps = 15/197 (7%)

Query: 335 HGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISAL 394
           H KQ+H  LI+ +   +  +   LI  YS    L+    VF+   +  N  L+N +I A 
Sbjct: 37  HIKQIHAQLIKCHLHQDPYIAPKLIASYSLTNNLSSAVNVFNQVPDP-NVHLYNYLIRAY 95

Query: 395 TQHGYDEQAIRLFHDMVR---SSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLG- 450
           +  G +  ++  F  +++     V  D  T   +L  C  S      +    +    LG 
Sbjct: 96  SLSGNESNSLCAFGVLLKMHVDGVLADNFTYPFLLKGCNGSSSWLSLVKMVHAHVEKLGF 155

Query: 451 ----IIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMG 506
                +PN      LI+   + G  +  M     M  E D   WN++ G    +G++D  
Sbjct: 156 YWDIFVPNS-----LIDCYCRCGDVEMAMKVFSGME-ERDVVSWNSMVGGLVKNGDLDGA 209

Query: 507 RKVVDQLIDQNPQSSAT 523
            KV D++ +++  S  T
Sbjct: 210 LKVFDEMPERDRVSWNT 226


>gi|255586261|ref|XP_002533783.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223526284|gb|EEF28596.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 672

 Score =  306 bits (784), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 179/573 (31%), Positives = 282/573 (49%), Gaps = 67/573 (11%)

Query: 18  NCLIQSFLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLH 77
           N +I  F   +  G + EA      +   G+   + T A  L    ES SLK GK +H +
Sbjct: 143 NGMIAGF---VQNGFMDEASLLFSEMISAGVSPDSITFASFLPSVTESASLKQGKEIHGY 199

Query: 78  LKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKH 137
           + L        FL + LI +YFKC                             ++GM   
Sbjct: 200 I-LRHGIALDVFLKSALIDIYFKC----------------------------RDVGM--- 227

Query: 138 ARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVK 197
           A  +F      D+V    +I GY  +G   + L+ ++ L    +S N  + A +L  C  
Sbjct: 228 ACKIFKQSTNVDIVVCTAIISGYVLNGLNNDALEIFRWLLEEKMSPNAVTLASVLPACAG 287

Query: 198 LEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTM 257
           L  L L +++H  +L  G      + S+I+D YAKCG L                     
Sbjct: 288 LATLNLGKELHANILKHGLDERRHVGSAIMDMYAKCGRL--------------------- 326

Query: 258 VSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQ 317
                     + A ++F  MPEK+ V W  +I   ++NG  Q+A++LF +M    +  + 
Sbjct: 327 ----------DLAYQIFRRMPEKDAVCWNAIITNCSQNGKPQEAIDLFRQMGREGLSYDC 376

Query: 318 HTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDL 377
            + S+ L ACA++ +L HGK +H F+I+  F S     S+LIDMY KCG L+  R VFD+
Sbjct: 377 VSISAALSACANLPALHHGKAIHSFMIKGAFDSEVFAESALIDMYGKCGNLSVARCVFDM 436

Query: 378 TDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQE 437
              K N + WN++I+A   HG+ E ++ LFH M+   ++PD +T   IL+AC H+G V +
Sbjct: 437 MREK-NEVSWNSIIAAYGSHGHLEVSLALFHKMLEDGIQPDHVTFLTILSACGHAGQVDK 495

Query: 438 GLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVC 497
           G+ YF  MT + GI    EH+AC+++L  +AG  ++    ++ MP+  D  +W  L G C
Sbjct: 496 GIQYFRCMTEEYGIPARMEHYACIVDLFGRAGRLNEAFETIKNMPFSPDDGVWGTLLGAC 555

Query: 498 RIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQA 557
           R+HGN+++       L+D +P++S  + LLS++++  G+   V K+R L+ +R  +K   
Sbjct: 556 RVHGNVELAEVASRCLLDLDPENSGCYVLLSNVHADAGQWGSVRKIRSLMKKRGVQKVPG 615

Query: 558 ISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQL 590
            SWIE+    H F  +D  HP    +YSVL  L
Sbjct: 616 YSWIEVNKTTHMFVAADGSHPESAQIYSVLNNL 648



 Score =  170 bits (431), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 108/394 (27%), Positives = 188/394 (47%), Gaps = 38/394 (9%)

Query: 120 FSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRF 179
           F  ++++  YA  G ++ AR LFD M  +D V WN M+ G+ K G     +K ++ +R  
Sbjct: 8   FVGSSLIKLYAENGCIEDARRLFDKMPNKDCVLWNVMLNGFVKCGEPNSAVKVFEDMRNC 67

Query: 180 SISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDA 239
               N  +FA +L+IC      +   Q+HG V+  GF                       
Sbjct: 68  QTKPNSITFASVLSICASEALSEFGNQLHGLVISCGF----------------------- 104

Query: 240 RRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQ 299
                     D L    +V+ Y+K G +  A KLFN MP+ N V+W  +IAG+ +NG   
Sbjct: 105 --------HFDPLVANALVAMYSKFGQLSDALKLFNTMPDTNVVTWNGMIAGFVQNGFMD 156

Query: 300 KALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLI 359
           +A  LF+ M+   + P+  TF+S L +     SLK GK++HG+++R     +  + S+LI
Sbjct: 157 EASLLFSEMISAGVSPDSITFASFLPSVTESASLKQGKEIHGYILRHGIALDVFLKSALI 216

Query: 360 DMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDK 419
           D+Y KC  +    ++F  + N +  ++   +IS    +G +  A+ +F  ++   + P+ 
Sbjct: 217 DIYFKCRDVGMACKIFKQSTNVD-IVVCTAIISGYVLNGLNNDALEIFRWLLEEKMSPNA 275

Query: 420 ITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLE 479
           +TLA +L AC     +  G     ++    G+   +   + ++++ A+ G  D       
Sbjct: 276 VTLASVLPACAGLATLNLGKELHANILKH-GLDERRHVGSAIMDMYAKCGRLDLAYQIFR 334

Query: 480 KMPYEHDSYLWNALHGVCRIHGN----IDMGRKV 509
           +MP E D+  WNA+   C  +G     ID+ R++
Sbjct: 335 RMP-EKDAVCWNAIITNCSQNGKPQEAIDLFRQM 367



 Score =  159 bits (403), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 109/421 (25%), Positives = 202/421 (47%), Gaps = 38/421 (9%)

Query: 123 NNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSIS 182
           N +++ Y+  G +  A  LF+ M + +VV+WN MI G+ ++G ++E    +  +    +S
Sbjct: 112 NALVAMYSKFGQLSDALKLFNTMPDTNVVTWNGMIAGFVQNGFMDEASLLFSEMISAGVS 171

Query: 183 CNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRL 242
            +  +FA  L    +   LK  +++HG +L  G   +V + S+++D Y KC         
Sbjct: 172 PDSITFASFLPSVTESASLKQGKEIHGYILRHGIALDVFLKSALIDIYFKC--------- 222

Query: 243 FDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKAL 302
                 RDV                  A K+F +    + V  T +I+GY  NGL   AL
Sbjct: 223 ------RDV----------------GMACKIFKQSTNVDIVVCTAIISGYVLNGLNNDAL 260

Query: 303 ELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMY 362
           E+F  ++  ++ PN  T +S L ACA + +L  GK++H  +++        V S+++DMY
Sbjct: 261 EIFRWLLEEKMSPNAVTLASVLPACAGLATLNLGKELHANILKHGLDERRHVGSAIMDMY 320

Query: 363 SKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITL 422
           +KCG L+   Q+F     K+ ++ WN +I+  +Q+G  ++AI LF  M R  +  D +++
Sbjct: 321 AKCGRLDLAYQIFRRMPEKD-AVCWNAIITNCSQNGKPQEAIDLFRQMGREGLSYDCVSI 379

Query: 423 AVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEH-HACLIELLAQAGCSDQLMNQLEKM 481
           +  L+AC +   +  G      M    G   ++    + LI++  + G +  +   +  M
Sbjct: 380 SAALSACANLPALHHGKAIHSFMIK--GAFDSEVFAESALIDMYGKCG-NLSVARCVFDM 436

Query: 482 PYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVE 541
             E +   WN++      HG++++   +  ++++   Q    H    +I SA G    V+
Sbjct: 437 MREKNEVSWNSIIAAYGSHGHLEVSLALFHKMLEDGIQPD--HVTFLTILSACGHAGQVD 494

Query: 542 K 542
           K
Sbjct: 495 K 495



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 74/224 (33%), Positives = 117/224 (52%), Gaps = 32/224 (14%)

Query: 215 GFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLF 274
           GF  +  + SS++  YA+ G + DARRLFD+   +D + W  M++G+ K G+  SA K+F
Sbjct: 2   GFNVDEFVGSSLIKLYAENGCIEDARRLFDKMPNKDCVLWNVMLNGFVKCGEPNSAVKVF 61

Query: 275 NEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLK 334
            +M                RN                + +PN  TF+S L  CAS    +
Sbjct: 62  EDM----------------RN---------------CQTKPNSITFASVLSICASEALSE 90

Query: 335 HGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISAL 394
            G Q+HG +I   F  + +V ++L+ MYSK G L+D  ++F+ T    N + WN MI+  
Sbjct: 91  FGNQLHGLVISCGFHFDPLVANALVAMYSKFGQLSDALKLFN-TMPDTNVVTWNGMIAGF 149

Query: 395 TQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEG 438
            Q+G+ ++A  LF +M+ + V PD IT A  L + T S  +++G
Sbjct: 150 VQNGFMDEASLLFSEMISAGVSPDSITFASFLPSVTESASLKQG 193



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 37/104 (35%), Positives = 57/104 (54%), Gaps = 6/104 (5%)

Query: 348 FRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLF 407
           F  +  V SSLI +Y++ GC+ D R++FD   NK+  +LWN M++   + G    A+++F
Sbjct: 3   FNVDEFVGSSLIKLYAENGCIEDARRLFDKMPNKD-CVLWNVMLNGFVKCGEPNSAVKVF 61

Query: 408 HDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGI 451
            DM     KP+ IT A +L+ C       E L+ F +  H L I
Sbjct: 62  EDMRNCQTKPNSITFASVLSICA-----SEALSEFGNQLHGLVI 100


>gi|357497455|ref|XP_003619016.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494031|gb|AES75234.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 999

 Score =  306 bits (784), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 152/481 (31%), Positives = 262/481 (54%), Gaps = 45/481 (9%)

Query: 118 NLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLR 177
           N++  + ++  YA  G + HA  +F  + E DVVSW  MI GY +     E L  +K ++
Sbjct: 472 NVYVSSVLIDMYAKHGKLDHALKIFRRLKENDVVSWTAMIAGYTQHDKFTEALNLFKEMQ 531

Query: 178 RFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELS 237
              I  +   FA  ++ C  ++ L   RQ+H Q  ++G+  ++ I +++V  YA+C    
Sbjct: 532 DQGIKSDNIGFASAISACAGIQALDQGRQIHAQSCLSGYSDDLSIGNALVSLYARC---- 587

Query: 238 DARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGL 297
                                      G +  A   F+++  K+ VSW +L++G+ ++G 
Sbjct: 588 ---------------------------GKVREAYAAFDQIYAKDNVSWNSLVSGFAQSGY 620

Query: 298 GQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSS 357
            ++AL +F +M    +  N  TF S + A A+I +++ GKQ+HG + +T + S T V ++
Sbjct: 621 FEEALNIFAQMNKAGLEINSFTFGSAVSAAANIANVRIGKQIHGMIRKTGYDSETEVSNA 680

Query: 358 LIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKP 417
           LI +Y+KCG ++D              + WN+MI+  +QHG   +A++LF DM +  V P
Sbjct: 681 LITLYAKCGTIDD--------------ISWNSMITGYSQHGCGFEALKLFEDMKQLDVLP 726

Query: 418 DKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQ 477
           + +T   +L+AC+H GLV EG++YF SM+    ++P  EH+AC+++LL ++G   +    
Sbjct: 727 NHVTFVGVLSACSHVGLVDEGISYFRSMSEAHNLVPKPEHYACVVDLLGRSGLLSRAKRF 786

Query: 478 LEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKG 537
           +E+MP + D+ +W  L   C +H NID+G      L++  P+ SAT+ L+S++Y+  GK 
Sbjct: 787 VEEMPIQPDAMVWRTLLSACNVHKNIDIGEFAASHLLELEPKDSATYVLVSNMYAVSGKW 846

Query: 538 RLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQMGED 597
              ++ RQ++ +R  KKE   SW+E++N VHAF   D  HP  D++Y  L  L  +  E+
Sbjct: 847 DCRDRTRQMMKDRGVKKEPGRSWVEVDNSVHAFFAGDQNHPRADMIYEYLRGLDFRAAEN 906

Query: 598 A 598
            
Sbjct: 907 G 907



 Score =  135 bits (341), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 120/530 (22%), Positives = 219/530 (41%), Gaps = 98/530 (18%)

Query: 18  NCLIQSFLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCA-ESKSLKLGKRVHL 76
           +C  + F + I++  +         +  + +       A +L+ C+  + S +  +++H 
Sbjct: 129 SCWNRIFNTFIAERLMGRVPGLFRRMLTKNVEFDERIFAVVLRGCSGNAVSFRFVEQIHA 188

Query: 77  HLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMK 136
              +T     +TF+ N LI +YFK G                                + 
Sbjct: 189 K-TITSGFESSTFICNPLIDLYFKNG-------------------------------FLS 216

Query: 137 HARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICV 196
            A+ +F+N+  RD VSW  MI G +++G  EE +  +  +              +L+ C 
Sbjct: 217 SAKKVFENLKARDSVSWVAMISGLSQNGYEEEAMLLFCQI--------------VLSACT 262

Query: 197 KLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTT 256
           K+E  +  +Q+HG VL  GF S   + +++V  Y++ G LS                   
Sbjct: 263 KVEFFEFGKQLHGLVLKQGFSSETYVCNALVTLYSRSGNLS------------------- 303

Query: 257 MVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPN 316
                       SA ++F+ M +++ VS+ +LI+G  + G   +AL LF +M +   +P+
Sbjct: 304 ------------SAEQIFHCMSQRDRVSYNSLISGLAQQGYINRALALFKKMNLDCQKPD 351

Query: 317 QHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFD 376
             T +S L ACAS+ +L +GKQ H + I+    S+ +V  SL+D+Y KC  +    + F 
Sbjct: 352 CVTVASLLSACASVGALPNGKQFHSYAIKAGMTSDIVVEGSLLDLYVKCSDIKTAHEFFL 411

Query: 377 LTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQ 436
                +N                  ++ ++F  M    + P++ T   IL  CT  G   
Sbjct: 412 CYGQLDNL----------------NKSFQIFTQMQIEGIVPNQFTYPSILKTCTTLGATD 455

Query: 437 EGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGV 496
            G     +     G   N    + LI++ A+ G  D  +    ++  E+D   W A+   
Sbjct: 456 LG-EQIHTQVLKTGFQFNVYVSSVLIDMYAKHGKLDHALKIFRRLK-ENDVVSWTAMIAG 513

Query: 497 CRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQL 546
              H        +  ++ DQ  +S    G  S+I SA    + +++ RQ+
Sbjct: 514 YTQHDKFTEALNLFKEMQDQGIKSDNI-GFASAI-SACAGIQALDQGRQI 561


>gi|449514605|ref|XP_004164425.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g49170, chloroplastic-like [Cucumis sativus]
          Length = 849

 Score =  306 bits (784), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 176/579 (30%), Positives = 296/579 (51%), Gaps = 64/579 (11%)

Query: 27  LISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTP 86
           L+  G   EAI     +   G      TL+ ++  CA  + L LG+++H    +    T 
Sbjct: 246 LMQFGYAGEAIDLFLDMIFSGYEPDRFTLSGVISACANMELLLLGQQLHSQ-AIRHGLTL 304

Query: 87  TTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMA 146
              +   LI+MY KC  D                            G M  AR +FD + 
Sbjct: 305 DRCVGCCLINMYAKCSVD----------------------------GSMCAARKIFDQIL 336

Query: 147 ERDVVSWNTMIIGYAKSGAV-EEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTR 205
           + +V SW  MI GY + G   EE L  ++ +    +  N F+F+  L  C  L  L++  
Sbjct: 337 DHNVFSWTAMITGYVQKGGYDEEALDLFRGMILTHVIPNHFTFSSTLKACANLAALRIGE 396

Query: 206 QVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLG 265
           QV    +  GF S   +++S++  YA+ G +          DAR                
Sbjct: 397 QVFTHAVKLGFSSVNCVANSLISMYARSGRID---------DAR---------------- 431

Query: 266 DMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLC 325
                 K F+ + EKN +S+ T+I  Y +N   ++ALELF  +    +  +  TF+S L 
Sbjct: 432 ------KAFDILFEKNLISYNTVIDAYAKNLNSEEALELFNEIEDQGMGASAFTFASLLS 485

Query: 326 ACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSM 385
             ASI ++  G+Q+H  +I++  + N  V ++LI MYS+CG +    QVF+  +++ N +
Sbjct: 486 GAASIGTIGKGEQIHARVIKSGLKLNQSVCNALISMYSRCGNIESAFQVFEDMEDR-NVI 544

Query: 386 LWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESM 445
            W ++I+   +HG+  QA+ LFH M+   V+P+++T   +L+AC+H GLV EG  +F+SM
Sbjct: 545 SWTSIITGFAKHGFATQALELFHKMLEEGVRPNEVTYIAVLSACSHVGLVNEGWKHFKSM 604

Query: 446 THDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDM 505
             + G+IP  EH+AC++++L ++G   + +  +  MPY+ D+ +W    G CR+HGN+++
Sbjct: 605 YTEHGVIPRMEHYACIVDILGRSGSLSEAIQFINSMPYKADALVWRTFLGACRVHGNLEL 664

Query: 506 GRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIEN 565
           G+     +I+Q P   A + LLS++Y+++ K   V  +R+ + E+   KE   SW+E+EN
Sbjct: 665 GKHAAKMIIEQEPHDPAAYILLSNLYASISKWDEVSNIRKAMKEKXLIKEAGCSWVEVEN 724

Query: 566 KVHAFSVSDSLHPMRDVLYSVLEQLAGQMGE--DAPSLD 602
           KVH F V D+ HP    +Y  L+ L+ ++ +    P+LD
Sbjct: 725 KVHKFYVGDTSHPKAAEIYDELQNLSVKIKKLGYVPNLD 763



 Score =  159 bits (401), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 142/539 (26%), Positives = 233/539 (43%), Gaps = 110/539 (20%)

Query: 18  NCLIQSFLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLH 77
           N L    +  I+ G+L +AIS+L+ +  +G     +T +  L++C  ++S  +G  VH  
Sbjct: 32  NPLTGRLIQEINNGRLHKAISTLEHMVHQGSHPDLQTYSLFLKKCIRTRSFDIGTLVHEK 91

Query: 78  LKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKI-PVKNLFSYNNMLSGYANLGMMK 136
           L  +  +  +  L N LIS+Y KCG    A  +F  +   ++L S++ M+S +AN     
Sbjct: 92  LTQSDLQLDSVTL-NSLISLYSKCGQWEKATSIFRLMGSSRDLISWSAMVSCFAN----- 145

Query: 137 HARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICV 196
                 +NM  R ++++  MI         E G  +Y          NE+ FA     C 
Sbjct: 146 ------NNMGFRALLTFVDMI---------ENG--YYP---------NEYCFAAATRACS 179

Query: 197 KLEELKLTRQVHGQVLVTGFL-SNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWT 255
             E + +   + G V+ TG+L S+V +   ++D + K                       
Sbjct: 180 TAEFVSVGDSIFGFVIKTGYLQSDVCVGCGLIDMFVK----------------------- 216

Query: 256 TMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRP 315
                    GD+ SA K+F +MPE+N V+WT +I    + G   +A++LF  M+     P
Sbjct: 217 -------GRGDLVSAFKVFEKMPERNAVTWTLMITRLMQFGYAGEAIDLFLDMIFSGYEP 269

Query: 316 NQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKC---GCLNDGR 372
           ++ T S  + ACA++  L  G+Q+H   IR     +  V   LI+MY+KC   G +   R
Sbjct: 270 DRFTLSGVISACANMELLLLGQQLHSQAIRHGLTLDRCVGCCLINMYAKCSVDGSMCAAR 329

Query: 373 QVFD-LTDNKENSMLWNTMISALTQH-GYDEQAIRLFHDMVRSSVKPDKITLAVILNACT 430
           ++FD + D+  N   W  MI+   Q  GYDE+A+ LF  M+ + V P+  T +  L AC 
Sbjct: 330 KIFDQILDH--NVFSWTAMITGYVQKGGYDEEALDLFRGMILTHVIPNHFTFSSTLKACA 387

Query: 431 HSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLW 490
           +                                 LA     +Q+     K+ +   + + 
Sbjct: 388 N---------------------------------LAALRIGEQVFTHAVKLGFSSVNCVA 414

Query: 491 NALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINE 549
           N+L  +    G ID  RK  D L ++N  S  T      +  A  K    E+  +L NE
Sbjct: 415 NSLISMYARSGRIDDARKAFDILFEKNLISYNT------VIDAYAKNLNSEEALELFNE 467



 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 53/215 (24%), Positives = 92/215 (42%), Gaps = 4/215 (1%)

Query: 281 NPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVH 340
           NP   T  +     NG   KA+     M+     P+  T+S  L  C    S   G  VH
Sbjct: 30  NPNPLTGRLIQEINNGRLHKAISTLEHMVHQGSHPDLQTYSLFLKKCIRTRSFDIGTLVH 89

Query: 341 GFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYD 400
             L +++ + +++ ++SLI +YSKCG       +F L  +  + + W+ M+S    +   
Sbjct: 90  EKLTQSDLQLDSVTLNSLISLYSKCGQWEKATSIFRLMGSSRDLISWSAMVSCFANNNMG 149

Query: 401 EQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHAC 460
            +A+  F DM+ +   P++   A    AC+ +  V  G + F       G + +     C
Sbjct: 150 FRALLTFVDMIENGYYPNEYCFAAATRACSTAEFVSVGDSIF-GFVIKTGYLQSDVCVGC 208

Query: 461 -LIELLAQA-GCSDQLMNQLEKMPYEHDSYLWNAL 493
            LI++  +  G         EKMP E ++  W  +
Sbjct: 209 GLIDMFVKGRGDLVSAFKVFEKMP-ERNAVTWTLM 242


>gi|328774757|gb|AEB39778.1| pentatricopeptide repeat protein 77 [Funaria hygrometrica]
          Length = 1161

 Score =  306 bits (784), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 189/655 (28%), Positives = 312/655 (47%), Gaps = 106/655 (16%)

Query: 18   NCLIQSFLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLH 77
            N +I  +     +G   EA+     +   G++    T   +L  C  S +   GK +H  
Sbjct: 455  NAIIAGYARREDRG---EAMKLYKQMQSEGVKPGRVTFLHLLSACTNSSAYSDGKMIHED 511

Query: 78   LKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKH 137
            +  +  K+    L+N L++MY +CGS ++A+                             
Sbjct: 512  ILRSGIKS-NGHLANALMNMYRRCGSIMEAQ----------------------------- 541

Query: 138  ARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVK 197
              N+F+    RD++SWN+MI G+A+ G+ E   K +  +++  +  ++ +FA +L  C  
Sbjct: 542  --NVFEGTRARDIISWNSMIAGHAQHGSYEAAYKLFLEMKKEGLEPDKITFASVLVGCKN 599

Query: 198  LEELKLTRQVH--------------GQVLVTGFLS-----------------NVVISSSI 226
             E L+L RQ+H              G  L+  ++                  NV+  +++
Sbjct: 600  PEALELGRQIHMLIIESGLQLDVNLGNALINMYIRCGSLQDAYEVFHSLRHRNVMSWTAM 659

Query: 227  VDAYAKCGELSDARRLF----------------------------DETDA---------- 248
            +  +A  GE   A  LF                            DE             
Sbjct: 660  IGGFADQGEDRKAFELFWQMQNDGFKPVKSTFSSILKACMSSACLDEGKKVIAHILNSGY 719

Query: 249  -RDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTR 307
              D      ++S Y+K G M  A K+F++MP ++ +SW  +IAGY +NGLG  AL+   +
Sbjct: 720  ELDTGVGNALISAYSKSGSMTDARKVFDKMPNRDIMSWNKMIAGYAQNGLGGTALQFAYQ 779

Query: 308  MMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGC 367
            M    +  N+ +F S L AC+S  +L+ GK+VH  +++   + +  V ++LI MY+KCG 
Sbjct: 780  MQEQGVVLNKFSFVSILNACSSFSALEEGKRVHAEIVKRKMQGDVRVGAALISMYAKCGS 839

Query: 368  LNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILN 427
            L + ++VFD    K N + WN MI+A  QHG   +A+  F+ M +  +KPD  T   IL+
Sbjct: 840  LEEAQEVFDNFTEK-NVVTWNAMINAYAQHGLASKALDFFNCMDKEGIKPDGSTFTSILS 898

Query: 428  ACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDS 487
            AC HSGLV EG   F S+    G+ P  EH+ CL+ LL +AG   +    + +MP+  D+
Sbjct: 899  ACNHSGLVMEGNRIFSSLESQHGLSPTIEHYGCLVGLLGRAGRFQEAETLINQMPFPPDA 958

Query: 488  YLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLI 547
             +W  L G CRIHGN+ +     +  +  N ++ A + LLS++Y+A G+   V K+R+++
Sbjct: 959  AVWETLLGACRIHGNVALAEHAANNALKLNARNPAVYVLLSNVYAAAGRWDDVAKIRRVM 1018

Query: 548  NERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQMGEDAPSLD 602
              R  +KE   SWIE++N +H F  +D  HP    +Y  L++L+ +M     S D
Sbjct: 1019 EGRGIRKEPGRSWIEVDNIIHEFIAADRSHPETAEIYEELKRLSLEMERAGYSPD 1073



 Score =  189 bits (480), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 123/473 (26%), Positives = 210/473 (44%), Gaps = 76/473 (16%)

Query: 26  SLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKT 85
           +L   G   EA      +   G+ +   T   +L  C+ SK+L  G+ +H H+      +
Sbjct: 359 ALAQHGHYEEAFEQYYQMRSDGVVMNRTTYLSVLNACSTSKALGAGELIHSHISEVGHSS 418

Query: 86  PTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNM 145
               + N LISMY +C                               G +  AR LF+ M
Sbjct: 419 DVQ-IGNSLISMYARC-------------------------------GDLPRARELFNTM 446

Query: 146 AERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTR 205
            +RD++SWN +I GYA+     E +K YK ++   +     +F  +L+ C         +
Sbjct: 447 PKRDLISWNAIIAGYARREDRGEAMKLYKQMQSEGVKPGRVTFLHLLSACTNSSAYSDGK 506

Query: 206 QVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLG 265
            +H  +L +G  SN  +++++++ Y +CG + +A+ +F+ T ARD+++W +M++G+A+ G
Sbjct: 507 MIHEDILRSGIKSNGHLANALMNMYRRCGSIMEAQNVFEGTRARDIISWNSMIAGHAQHG 566

Query: 266 DMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLC 325
             E+A KLF EM ++                                + P++ TF+S L 
Sbjct: 567 SYEAAYKLFLEMKKEG-------------------------------LEPDKITFASVLV 595

Query: 326 ACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSM 385
            C +  +L+ G+Q+H  +I +  + +  + ++LI+MY +CG L D  +VF    ++ N M
Sbjct: 596 GCKNPEALELGRQIHMLIIESGLQLDVNLGNALINMYIRCGSLQDAYEVFHSLRHR-NVM 654

Query: 386 LWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESM 445
            W  MI      G D +A  LF  M     KP K T + IL AC  S  + EG      +
Sbjct: 655 SWTAMIGGFADQGEDRKAFELFWQMQNDGFKPVKSTFSSILKACMSSACLDEGKKVIAHI 714

Query: 446 TH-----DLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNAL 493
            +     D G+         LI   +++G         +KMP   D   WN +
Sbjct: 715 LNSGYELDTGV------GNALISAYSKSGSMTDARKVFDKMP-NRDIMSWNKM 760



 Score =  159 bits (403), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 103/411 (25%), Positives = 183/411 (44%), Gaps = 68/411 (16%)

Query: 30  KGQLSEAISSLDLLAQRGIRLPAETLAFI--LQQCAESKSLKLGKRVHLHLKLTQRKTPT 87
           K  + E I     ++  GI  P + + +I  L        L  GKR+H  L + +     
Sbjct: 262 KAYVEECIGLFGQMSSEGI--PPDKVTYINLLDAFTTPSMLDEGKRIH-KLAVNEGLNSD 318

Query: 88  TFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAE 147
             +   L +M+ +CG    A++  +                                 A+
Sbjct: 319 IRVGTALATMFVRCGDVAGAKQALEAF-------------------------------AD 347

Query: 148 RDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQV 207
           RDVV +N +I   A+ G  EE  + Y  +R   +  N  ++  +L  C   + L     +
Sbjct: 348 RDVVVYNALIAALAQHGHYEEAFEQYYQMRSDGVVMNRTTYLSVLNACSTSKALGAGELI 407

Query: 208 HGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDM 267
           H  +   G  S+V I +S++  YA+CG+L  AR LF+    RD+++W  +++GYA+  D 
Sbjct: 408 HSHISEVGHSSDVQIGNSLISMYARCGDLPRARELFNTMPKRDLISWNAIIAGYARREDR 467

Query: 268 ESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCAC 327
             A KL+ +M  +                                ++P + TF   L AC
Sbjct: 468 GEAMKLYKQMQSEG-------------------------------VKPGRVTFLHLLSAC 496

Query: 328 ASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLW 387
            +  +   GK +H  ++R+  +SN  + ++L++MY +CG + + + VF+ T  ++  + W
Sbjct: 497 TNSSAYSDGKMIHEDILRSGIKSNGHLANALMNMYRRCGSIMEAQNVFEGTRARD-IISW 555

Query: 388 NTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEG 438
           N+MI+   QHG  E A +LF +M +  ++PDKIT A +L  C +   ++ G
Sbjct: 556 NSMIAGHAQHGSYEAAYKLFLEMKKEGLEPDKITFASVLVGCKNPEALELG 606



 Score =  157 bits (397), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 115/447 (25%), Positives = 204/447 (45%), Gaps = 70/447 (15%)

Query: 51  PAET--LAFI--LQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVD 106
           P ET   A++  +Q C   +SL   KR+H  + +     P  FLSN LI+MY KC S  D
Sbjct: 77  PTETNRAAYVDLVQNCTRKRSLAEAKRIHAQM-VEAGVGPDIFLSNLLINMYVKCRSVSD 135

Query: 107 ARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAV 166
           A +VF K+P +++ S+N+++S YA  G  K A  LF+ M             G+  S   
Sbjct: 136 AHQVFLKMPRRDVISWNSLISCYAQQGFKKKAFQLFEEM----------QTAGFIPS--- 182

Query: 167 EEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSI 226
                             + ++  ILT C    EL+  +++H +++  G+  +  + +S+
Sbjct: 183 ------------------KITYISILTACCSPAELEYGKKIHSKIIEAGYQRDPRVQNSL 224

Query: 227 VDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWT 286
           ++ Y KC +L  AR++F     RDV+++ TM+  YA+   +E    LF +M  +      
Sbjct: 225 LNMYGKCEDLPSARQVFSGIYRRDVVSYNTMLGLYAQKAYVEECIGLFGQMSSEG----- 279

Query: 287 TLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRT 346
                                     I P++ T+ + L A  +   L  GK++H   +  
Sbjct: 280 --------------------------IPPDKVTYINLLDAFTTPSMLDEGKRIHKLAVNE 313

Query: 347 NFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRL 406
              S+  V ++L  M+ +CG +   +Q  +   +++  +++N +I+AL QHG+ E+A   
Sbjct: 314 GLNSDIRVGTALATMFVRCGDVAGAKQALEAFADRD-VVVYNALIAALAQHGHYEEAFEQ 372

Query: 407 FHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLA 466
           ++ M    V  ++ T   +LNAC+ S  +  G     S   ++G   + +    LI + A
Sbjct: 373 YYQMRSDGVVMNRTTYLSVLNACSTSKALGAG-ELIHSHISEVGHSSDVQIGNSLISMYA 431

Query: 467 QAGCSDQLMNQLEKMPYEHDSYLWNAL 493
           + G   +       MP + D   WNA+
Sbjct: 432 RCGDLPRARELFNTMP-KRDLISWNAI 457



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 83/326 (25%), Positives = 148/326 (45%), Gaps = 44/326 (13%)

Query: 184 NEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLF 243
           N  ++  ++  C +   L   +++H Q++  G   ++ +S+ +++ Y KC  +SDA    
Sbjct: 81  NRAAYVDLVQNCTRKRSLAEAKRIHAQMVEAGVGPDIFLSNLLINMYVKCRSVSDAH--- 137

Query: 244 DETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALE 303
                                       ++F +MP ++ +SW +LI+ Y + G  +KA +
Sbjct: 138 ----------------------------QVFLKMPRRDVISWNSLISCYAQQGFKKKAFQ 169

Query: 304 LFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYS 363
           LF  M      P++ T+ S L AC S   L++GK++H  +I   ++ +  V +SL++MY 
Sbjct: 170 LFEEMQTAGFIPSKITYISILTACCSPAELEYGKKIHSKIIEAGYQRDPRVQNSLLNMYG 229

Query: 364 KCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLA 423
           KC  L   RQVF     + + + +NTM+    Q  Y E+ I LF  M    + PDK+T  
Sbjct: 230 KCEDLPSARQVFSGI-YRRDVVSYNTMLGLYAQKAYVEECIGLFGQMSSEGIPPDKVTYI 288

Query: 424 VILNACTHSGLVQEG-----LTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQL 478
            +L+A T   ++ EG     L   E +  D+ +         L  +  + G        L
Sbjct: 289 NLLDAFTTPSMLDEGKRIHKLAVNEGLNSDIRV------GTALATMFVRCGDVAGAKQAL 342

Query: 479 EKMPYEHDSYLWNALHGVCRIHGNID 504
           E    + D  ++NAL      HG+ +
Sbjct: 343 EAFA-DRDVVVYNALIAALAQHGHYE 367


>gi|334184919|ref|NP_182060.2| chlororespiratory reduction 4 protein [Arabidopsis thaliana]
 gi|218546767|sp|O22137.2|PP202_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g45350, chloroplastic; AltName: Full=Protein
           CHLORORESPIRATORY REDUCTION 4; Flags: Precursor
 gi|330255448|gb|AEC10542.1| chlororespiratory reduction 4 protein [Arabidopsis thaliana]
          Length = 613

 Score =  306 bits (784), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 175/532 (32%), Positives = 282/532 (53%), Gaps = 45/532 (8%)

Query: 45  QRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSD 104
           + G+ +   +L+ +L+ C+    +K G ++H  LK T   +   FL N LI +Y KCG  
Sbjct: 114 ENGVSVDKFSLSLVLKACSRLGFVKGGMQIHGFLKKTGLWS-DLFLQNCLIGLYLKCGCL 172

Query: 105 VDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFD--NMAERDVVSWNTMIIGYAK 162
             +R++FD++P ++  SYN+M+ GY   G++  AR LFD   M  ++++SWN+MI GYA+
Sbjct: 173 GLSRQMFDRMPKRDSVSYNSMIDGYVKCGLIVSARELFDLMPMEMKNLISWNSMISGYAQ 232

Query: 163 -SGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVV 221
            S  V+   K +  +                                          +++
Sbjct: 233 TSDGVDIASKLFADMPE---------------------------------------KDLI 253

Query: 222 ISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKN 281
             +S++D Y K G + DA+ LFD    RDV+TW TM+ GYAKLG +  A  LF++MP ++
Sbjct: 254 SWNSMIDGYVKHGRIEDAKGLFDVMPRRDVVTWATMIDGYAKLGFVHHAKTLFDQMPHRD 313

Query: 282 PVSWTTLIAGYTRNGLGQKALELFTRM-MILRIRPNQHTFSSCLCACASIVSLKHGKQVH 340
            V++ +++AGY +N    +ALE+F+ M     + P+  T    L A A +  L     +H
Sbjct: 314 VVAYNSMMAGYVQNKYHMEALEIFSDMEKESHLLPDDTTLVIVLPAIAQLGRLSKAIDMH 373

Query: 341 GFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYD 400
            +++   F     +  +LIDMYSKCG +     VF+  +NK     WN MI  L  HG  
Sbjct: 374 LYIVEKQFYLGGKLGVALIDMYSKCGSIQHAMLVFEGIENKSIDH-WNAMIGGLAIHGLG 432

Query: 401 EQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHAC 460
           E A  +   + R S+KPD IT   +LNAC+HSGLV+EGL  FE M     I P  +H+ C
Sbjct: 433 ESAFDMLLQIERLSLKPDDITFVGVLNACSHSGLVKEGLLCFELMRRKHKIEPRLQHYGC 492

Query: 461 LIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQS 520
           ++++L+++G  +   N +E+MP E +  +W      C  H   + G  V   LI Q   +
Sbjct: 493 MVDILSRSGSIELAKNLIEEMPVEPNDVIWRTFLTACSHHKEFETGELVAKHLILQAGYN 552

Query: 521 SATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSV 572
            +++ LLS++Y++ G  + V +VR ++ ER+ +K    SWIE++ +VH F V
Sbjct: 553 PSSYVLLSNMYASFGMWKDVRRVRTMMKERKIEKIPGCSWIELDGRVHEFFV 604



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 100/379 (26%), Positives = 186/379 (49%), Gaps = 34/379 (8%)

Query: 148 RDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQV 207
            D   WN +I  ++      + L    ++    +S ++FS + +L  C +L  +K   Q+
Sbjct: 84  EDPFLWNAVIKSHSHGKDPRQALLLLCLMLENGVSVDKFSLSLVLKACSRLGFVKGGMQI 143

Query: 208 HGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDM 267
           HG +  TG  S++ + + ++  Y KCG L  +R++FD    RD +++ +M+ GY K G +
Sbjct: 144 HGFLKKTGLWSDLFLQNCLIGLYLKCGCLGLSRQMFDRMPKRDSVSYNSMIDGYVKCGLI 203

Query: 268 ESASKLFNEMP--EKNPVSWTTLIAGYTRNGLGQK-ALELFTRMMILRIRPNQHTFSSCL 324
            SA +LF+ MP   KN +SW ++I+GY +   G   A +LF  M      P +      L
Sbjct: 204 VSARELFDLMPMEMKNLISWNSMISGYAQTSDGVDIASKLFADM------PEKD-----L 252

Query: 325 CACASIVS--LKHGK-QVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNK 381
            +  S++   +KHG+ +    L     R + +  +++ID Y+K G ++  + +FD   ++
Sbjct: 253 ISWNSMIDGYVKHGRIEDAKGLFDVMPRRDVVTWATMIDGYAKLGFVHHAKTLFDQMPHR 312

Query: 382 ENSMLWNTMISALTQHGYDEQAIRLFHDMVRSS-VKPDKITLAVILNACTHSGLVQEGLT 440
            + + +N+M++   Q+ Y  +A+ +F DM + S + PD  TL ++L A    G + + + 
Sbjct: 313 -DVVAYNSMMAGYVQNKYHMEALEIFSDMEKESHLLPDDTTLVIVLPAIAQLGRLSKAID 371

Query: 441 YFESMTHDLGIIPNQEH-----HACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHG 495
                   L I+  Q +        LI++ ++ G     M   E +  +   + WNA+ G
Sbjct: 372 M------HLYIVEKQFYLGGKLGVALIDMYSKCGSIQHAMLVFEGIENKSIDH-WNAMIG 424

Query: 496 VCRIHGNIDMGRKVVDQLI 514
              IHG   +G    D L+
Sbjct: 425 GLAIHG---LGESAFDMLL 440



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 59/202 (29%), Positives = 99/202 (49%), Gaps = 21/202 (10%)

Query: 206 QVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLG 265
           Q+HG+++ TG + N  +++ IV A+A       +RR +    AR V              
Sbjct: 30  QIHGRLIKTGIIKNSNLTTRIVLAFAS------SRRPYLADFARCVFH------------ 71

Query: 266 DMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLC 325
           +    S  F E+  ++P  W  +I  ++     ++AL L   M+   +  ++ + S  L 
Sbjct: 72  EYHVCSFSFGEV--EDPFLWNAVIKSHSHGKDPRQALLLLCLMLENGVSVDKFSLSLVLK 129

Query: 326 ACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSM 385
           AC+ +  +K G Q+HGFL +T   S+  + + LI +Y KCGCL   RQ+FD    K +S+
Sbjct: 130 ACSRLGFVKGGMQIHGFLKKTGLWSDLFLQNCLIGLYLKCGCLGLSRQMFDRMP-KRDSV 188

Query: 386 LWNTMISALTQHGYDEQAIRLF 407
            +N+MI    + G    A  LF
Sbjct: 189 SYNSMIDGYVKCGLIVSARELF 210



 Score = 48.1 bits (113), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 43/167 (25%), Positives = 78/167 (46%), Gaps = 14/167 (8%)

Query: 338 QVHGFLIRTNFRSNTIVMSSLIDMYSK---------CGCLNDGRQVFDLTDNK-ENSMLW 387
           Q+HG LI+T    N+ + + ++  ++            C+     V   +  + E+  LW
Sbjct: 30  QIHGRLIKTGIIKNSNLTTRIVLAFASSRRPYLADFARCVFHEYHVCSFSFGEVEDPFLW 89

Query: 388 NTMISALTQHGYD-EQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMT 446
           N +I + + HG D  QA+ L   M+ + V  DK +L+++L AC+  G V+ G+       
Sbjct: 90  NAVIKSHS-HGKDPRQALLLLCLMLENGVSVDKFSLSLVLKACSRLGFVKGGMQ-IHGFL 147

Query: 447 HDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNAL 493
              G+  +     CLI L  + GC        ++MP + DS  +N++
Sbjct: 148 KKTGLWSDLFLQNCLIGLYLKCGCLGLSRQMFDRMP-KRDSVSYNSM 193


>gi|449480927|ref|XP_004156032.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g49710-like [Cucumis sativus]
          Length = 720

 Score =  306 bits (784), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 188/607 (30%), Positives = 307/607 (50%), Gaps = 78/607 (12%)

Query: 58  ILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVK 117
            L+ C   + L+ GK +H  L +      +T+LSNH + +Y KC     AR+VFD     
Sbjct: 14  FLKTCIAHRDLRTGKSLHA-LYIKSFVPTSTYLSNHFLLLYSKCRRLSAARRVFDHTHDC 72

Query: 118 NLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLR 177
           N+FS+N ++S YA    ++ A  LFD M + D VS+NT+I  YA+ G  +   + +  +R
Sbjct: 73  NVFSFNTLISAYAKESYVEVAHQLFDEMPQPDSVSYNTLIAAYARRGDTQPAFQLFLEMR 132

Query: 178 RFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGF-----LSNVVISS-------- 224
              +  + F+ +GI+T C     + L RQ+H   +VTG      + N +I+S        
Sbjct: 133 EAFLDMDGFTLSGIITACGI--NVGLIRQLHALSVVTGLDSYVSVGNALITSYSKNGFLK 190

Query: 225 -------------------SIVDAYAKCGELSDARRLFDETDAR----DVLTWTTMVSGY 261
                              S+V AY +  E S A  L+ E   R    D+ T  ++++ +
Sbjct: 191 EARRIFHWLSEDRDEVSWNSMVVAYMQHREGSKALELYLEMTVRGLIVDIFTLASVLTAF 250

Query: 262 -------------AKL-----------------------GDMESASKLFNEMPEKNPVSW 285
                        AKL                       G M    K+F+E+   + V W
Sbjct: 251 TNVQDLLGGLQFHAKLIKSGYHQNSHVGSGLIDLYSKCGGCMLDCRKVFDEISNPDLVLW 310

Query: 286 TTLIAGYT-RNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLI 344
            T+I+GY+    L  +ALE F ++  +  RP+  +    + AC+++ S   G+QVHG  +
Sbjct: 311 NTMISGYSLYEDLSDEALECFRQLQGVGHRPDDCSLVCVISACSNMSSPSQGRQVHGLAL 370

Query: 345 RTNFRSNTI-VMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQA 403
           + +  SN I V ++LI MYSKCG L D + +FD T  + N++ +N+MI+   QHG   Q+
Sbjct: 371 KLDIPSNRISVNNALIAMYSKCGNLRDAKTLFD-TMPEHNTVSYNSMIAGYAQHGMGFQS 429

Query: 404 IRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIE 463
           + LF  M+     P  IT   +L AC H+G V++G  YF  M    GI P   H +C+I+
Sbjct: 430 LHLFQRMLEMDFTPTNITFISVLAACAHTGRVEDGKIYFNMMKQKFGIEPEAGHFSCMID 489

Query: 464 LLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSAT 523
           LL +AG   +    +E +P++   + W+AL G CRIHGN+++  K  ++L+  +P ++A 
Sbjct: 490 LLGRAGKLSEAERLIETIPFDPGFFXWSALLGACRIHGNVELAIKAANRLLQLDPLNAAP 549

Query: 524 HGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVL 583
           + +L++IYS  G+ +    VR+L+ +R  KK+   SWIE+  ++H F   D+ HPM   +
Sbjct: 550 YVMLANIYSDNGRLQDAASVRKLMRDRGVKKKPGCSWIEVNRRIHIFVAEDTFHPMIKKI 609

Query: 584 YSVLEQL 590
              LE++
Sbjct: 610 QEYLEEM 616



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 94/308 (30%), Positives = 153/308 (49%), Gaps = 5/308 (1%)

Query: 187 SFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDET 246
           SF   L  C+   +L+  + +H   + +   ++  +S+  +  Y+KC  LS ARR+FD T
Sbjct: 10  SFRQFLKTCIAHRDLRTGKSLHALYIKSFVPTSTYLSNHFLLLYSKCRRLSAARRVFDHT 69

Query: 247 DARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFT 306
              +V ++ T++S YAK   +E A +LF+EMP+ + VS+ TLIA Y R G  Q A +LF 
Sbjct: 70  HDCNVFSFNTLISAYAKESYVEVAHQLFDEMPQPDSVSYNTLIAAYARRGDTQPAFQLFL 129

Query: 307 RMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCG 366
            M    +  +  T S  + AC   V L   +Q+H   + T   S   V ++LI  YSK G
Sbjct: 130 EMREAFLDMDGFTLSGIITACGINVGLI--RQLHALSVVTGLDSYVSVGNALITSYSKNG 187

Query: 367 CLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVIL 426
            L + R++F       + + WN+M+ A  QH    +A+ L+ +M    +  D  TLA +L
Sbjct: 188 FLKEARRIFHWLSEDRDEVSWNSMVVAYMQHREGSKALELYLEMTVRGLIVDIFTLASVL 247

Query: 427 NACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQ-AGCSDQLMNQLEKMPYEH 485
            A T+   +  GL +   +    G   N    + LI+L ++  GC        +++    
Sbjct: 248 TAFTNVQDLLGGLQFHAKLIKS-GYHQNSHVGSGLIDLYSKCGGCMLDCRKVFDEIS-NP 305

Query: 486 DSYLWNAL 493
           D  LWN +
Sbjct: 306 DLVLWNTM 313



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 39/128 (30%), Positives = 64/128 (50%), Gaps = 5/128 (3%)

Query: 318 HTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDL 377
           H+F   L  C +   L+ GK +H   I++   ++T + +  + +YSKC  L+  R+VFD 
Sbjct: 9   HSFRQFLKTCIAHRDLRTGKSLHALYIKSFVPTSTYLSNHFLLLYSKCRRLSAARRVFDH 68

Query: 378 TDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQE 437
           T +  N   +NT+ISA  +  Y E A +LF +M     +PD ++   ++ A    G  Q 
Sbjct: 69  THDC-NVFSFNTLISAYAKESYVEVAHQLFDEM----PQPDSVSYNTLIAAYARRGDTQP 123

Query: 438 GLTYFESM 445
               F  M
Sbjct: 124 AFQLFLEM 131


>gi|296090723|emb|CBI41122.3| unnamed protein product [Vitis vinifera]
          Length = 634

 Score =  306 bits (784), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 180/597 (30%), Positives = 302/597 (50%), Gaps = 71/597 (11%)

Query: 15  LPNNCLIQSFLSLISKGQLSEAISSLDLLAQRGIR--LPAE-TLAFILQQCAESKSLKLG 71
           +P   L+   L +    QL  A  ++DL     +   +P   T + +L  C E   L LG
Sbjct: 16  MPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTELGLLALG 75

Query: 72  KRVH---LHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSG 128
           K++H   + L L         +   L+ MY KC +D                        
Sbjct: 76  KQLHSRVIRLGLAL----DVCVGCSLVDMYAKCAAD------------------------ 107

Query: 129 YANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVE-EGLKFYKVLRRFSISCNEFS 187
               G +  +R +F+ M E +V+SW  +I  YA+SG  + E ++ +  +    I  N FS
Sbjct: 108 ----GSVDDSRKVFEQMPEHNVMSWTAIITAYAQSGECDKEAIELFCKMISGHIRPNHFS 163

Query: 188 FAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETD 247
           F+ +L  C  L +     QV+   +  G  S   + +S                      
Sbjct: 164 FSSVLKACGNLSDPYTGEQVYSYAVKLGIASVNCVGNS---------------------- 201

Query: 248 ARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTR 307
                    ++S YA+ G ME A K F+ + EKN VS+  ++ GY +N   ++A  LF  
Sbjct: 202 ---------LISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNE 252

Query: 308 MMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGC 367
           +    I  +  TF+S L   ASI ++  G+Q+HG L++  ++SN  + ++LI MYS+CG 
Sbjct: 253 IADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALISMYSRCGN 312

Query: 368 LNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILN 427
           +    QVF+  +++ N + W +MI+   +HG+  +A+ +FH M+ +  KP++IT   +L+
Sbjct: 313 IEAAFQVFNEMEDR-NVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEITYVAVLS 371

Query: 428 ACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDS 487
           AC+H G++ EG  +F SM  + GI+P  EH+AC+++LL ++G   + M  +  MP   D+
Sbjct: 372 ACSHVGMISEGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSMPLMADA 431

Query: 488 YLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLI 547
            +W  L G CR+HGN ++GR   + +++Q P   A + LLS+++++ G+ + V K+R+ +
Sbjct: 432 LVWRTLLGACRVHGNTELGRHAAEMILEQEPDDPAAYILLSNLHASAGQWKDVVKIRKSM 491

Query: 548 NERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQMGEDAPSLDAD 604
            ER   KE   SWIE+EN+VH F V ++ HP    +Y  L+QLA ++ E     D D
Sbjct: 492 KERNLIKEAGCSWIEVENRVHRFHVGETSHPQAWQIYQELDQLASKIKEMGYIPDTD 548



 Score =  151 bits (382), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 95/383 (24%), Positives = 182/383 (47%), Gaps = 67/383 (17%)

Query: 138 ARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVK 197
           A  +FD M ER++V+W  MI  +A+ G   + +  +  +       + F+++ +L+ C +
Sbjct: 9   AYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTE 68

Query: 198 LEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKC---GELSDARRLFDETDARDVLTW 254
           L  L L +Q+H +V+  G   +V +  S+VD YAKC   G + D+R++F++    +V++W
Sbjct: 69  LGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSW 128

Query: 255 TTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIR 314
           T +++ YA+ G+ +                              ++A+ELF +M+   IR
Sbjct: 129 TAIITAYAQSGECD------------------------------KEAIELFCKMISGHIR 158

Query: 315 PNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQV 374
           PN  +FSS L AC ++     G+QV+ + ++    S   V +SLI MY++ G + D R+ 
Sbjct: 159 PNHFSFSSVLKACGNLSDPYTGEQVYSYAVKLGIASVNCVGNSLISMYARSGRMEDARKA 218

Query: 375 FDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGL 434
           FD+   K N + +N ++    ++   E+A  LF+++  + +     T A +L+     G 
Sbjct: 219 FDILFEK-NLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIGISAFTFASLLSGAASIGA 277

Query: 435 VQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALH 494
           + +G                                 +Q+  +L K  Y+ +  + NAL 
Sbjct: 278 MGKG---------------------------------EQIHGRLLKGGYKSNQCICNALI 304

Query: 495 GVCRIHGNIDMGRKVVDQLIDQN 517
            +    GNI+   +V +++ D+N
Sbjct: 305 SMYSRCGNIEAAFQVFNEMEDRN 327


>gi|2583119|gb|AAB82628.1| hypothetical protein [Arabidopsis thaliana]
          Length = 606

 Score =  306 bits (784), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 175/532 (32%), Positives = 282/532 (53%), Gaps = 45/532 (8%)

Query: 45  QRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSD 104
           + G+ +   +L+ +L+ C+    +K G ++H  LK T   +   FL N LI +Y KCG  
Sbjct: 107 ENGVSVDKFSLSLVLKACSRLGFVKGGMQIHGFLKKTGLWS-DLFLQNCLIGLYLKCGCL 165

Query: 105 VDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFD--NMAERDVVSWNTMIIGYAK 162
             +R++FD++P ++  SYN+M+ GY   G++  AR LFD   M  ++++SWN+MI GYA+
Sbjct: 166 GLSRQMFDRMPKRDSVSYNSMIDGYVKCGLIVSARELFDLMPMEMKNLISWNSMISGYAQ 225

Query: 163 -SGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVV 221
            S  V+   K +  +                                          +++
Sbjct: 226 TSDGVDIASKLFADMPE---------------------------------------KDLI 246

Query: 222 ISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKN 281
             +S++D Y K G + DA+ LFD    RDV+TW TM+ GYAKLG +  A  LF++MP ++
Sbjct: 247 SWNSMIDGYVKHGRIEDAKGLFDVMPRRDVVTWATMIDGYAKLGFVHHAKTLFDQMPHRD 306

Query: 282 PVSWTTLIAGYTRNGLGQKALELFTRM-MILRIRPNQHTFSSCLCACASIVSLKHGKQVH 340
            V++ +++AGY +N    +ALE+F+ M     + P+  T    L A A +  L     +H
Sbjct: 307 VVAYNSMMAGYVQNKYHMEALEIFSDMEKESHLLPDDTTLVIVLPAIAQLGRLSKAIDMH 366

Query: 341 GFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYD 400
            +++   F     +  +LIDMYSKCG +     VF+  +NK     WN MI  L  HG  
Sbjct: 367 LYIVEKQFYLGGKLGVALIDMYSKCGSIQHAMLVFEGIENKSIDH-WNAMIGGLAIHGLG 425

Query: 401 EQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHAC 460
           E A  +   + R S+KPD IT   +LNAC+HSGLV+EGL  FE M     I P  +H+ C
Sbjct: 426 ESAFDMLLQIERLSLKPDDITFVGVLNACSHSGLVKEGLLCFELMRRKHKIEPRLQHYGC 485

Query: 461 LIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQS 520
           ++++L+++G  +   N +E+MP E +  +W      C  H   + G  V   LI Q   +
Sbjct: 486 MVDILSRSGSIELAKNLIEEMPVEPNDVIWRTFLTACSHHKEFETGELVAKHLILQAGYN 545

Query: 521 SATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSV 572
            +++ LLS++Y++ G  + V +VR ++ ER+ +K    SWIE++ +VH F V
Sbjct: 546 PSSYVLLSNMYASFGMWKDVRRVRTMMKERKIEKIPGCSWIELDGRVHEFFV 597



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 100/379 (26%), Positives = 186/379 (49%), Gaps = 34/379 (8%)

Query: 148 RDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQV 207
            D   WN +I  ++      + L    ++    +S ++FS + +L  C +L  +K   Q+
Sbjct: 77  EDPFLWNAVIKSHSHGKDPRQALLLLCLMLENGVSVDKFSLSLVLKACSRLGFVKGGMQI 136

Query: 208 HGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDM 267
           HG +  TG  S++ + + ++  Y KCG L  +R++FD    RD +++ +M+ GY K G +
Sbjct: 137 HGFLKKTGLWSDLFLQNCLIGLYLKCGCLGLSRQMFDRMPKRDSVSYNSMIDGYVKCGLI 196

Query: 268 ESASKLFNEMP--EKNPVSWTTLIAGYTRNGLGQK-ALELFTRMMILRIRPNQHTFSSCL 324
            SA +LF+ MP   KN +SW ++I+GY +   G   A +LF  M      P +      L
Sbjct: 197 VSARELFDLMPMEMKNLISWNSMISGYAQTSDGVDIASKLFADM------PEKD-----L 245

Query: 325 CACASIVS--LKHGK-QVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNK 381
            +  S++   +KHG+ +    L     R + +  +++ID Y+K G ++  + +FD   ++
Sbjct: 246 ISWNSMIDGYVKHGRIEDAKGLFDVMPRRDVVTWATMIDGYAKLGFVHHAKTLFDQMPHR 305

Query: 382 ENSMLWNTMISALTQHGYDEQAIRLFHDMVRSS-VKPDKITLAVILNACTHSGLVQEGLT 440
            + + +N+M++   Q+ Y  +A+ +F DM + S + PD  TL ++L A    G + + + 
Sbjct: 306 -DVVAYNSMMAGYVQNKYHMEALEIFSDMEKESHLLPDDTTLVIVLPAIAQLGRLSKAID 364

Query: 441 YFESMTHDLGIIPNQEH-----HACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHG 495
                   L I+  Q +        LI++ ++ G     M   E +  +   + WNA+ G
Sbjct: 365 M------HLYIVEKQFYLGGKLGVALIDMYSKCGSIQHAMLVFEGIENKSIDH-WNAMIG 417

Query: 496 VCRIHGNIDMGRKVVDQLI 514
              IHG   +G    D L+
Sbjct: 418 GLAIHG---LGESAFDMLL 433



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 59/202 (29%), Positives = 99/202 (49%), Gaps = 21/202 (10%)

Query: 206 QVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLG 265
           Q+HG+++ TG + N  +++ IV A+A       +RR +    AR V              
Sbjct: 23  QIHGRLIKTGIIKNSNLTTRIVLAFAS------SRRPYLADFARCVFH------------ 64

Query: 266 DMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLC 325
           +    S  F E+  ++P  W  +I  ++     ++AL L   M+   +  ++ + S  L 
Sbjct: 65  EYHVCSFSFGEV--EDPFLWNAVIKSHSHGKDPRQALLLLCLMLENGVSVDKFSLSLVLK 122

Query: 326 ACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSM 385
           AC+ +  +K G Q+HGFL +T   S+  + + LI +Y KCGCL   RQ+FD    K +S+
Sbjct: 123 ACSRLGFVKGGMQIHGFLKKTGLWSDLFLQNCLIGLYLKCGCLGLSRQMFDRMP-KRDSV 181

Query: 386 LWNTMISALTQHGYDEQAIRLF 407
            +N+MI    + G    A  LF
Sbjct: 182 SYNSMIDGYVKCGLIVSARELF 203



 Score = 48.1 bits (113), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 43/167 (25%), Positives = 78/167 (46%), Gaps = 14/167 (8%)

Query: 338 QVHGFLIRTNFRSNTIVMSSLIDMYSK---------CGCLNDGRQVFDLTDNK-ENSMLW 387
           Q+HG LI+T    N+ + + ++  ++            C+     V   +  + E+  LW
Sbjct: 23  QIHGRLIKTGIIKNSNLTTRIVLAFASSRRPYLADFARCVFHEYHVCSFSFGEVEDPFLW 82

Query: 388 NTMISALTQHGYD-EQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMT 446
           N +I + + HG D  QA+ L   M+ + V  DK +L+++L AC+  G V+ G+       
Sbjct: 83  NAVIKSHS-HGKDPRQALLLLCLMLENGVSVDKFSLSLVLKACSRLGFVKGGMQ-IHGFL 140

Query: 447 HDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNAL 493
              G+  +     CLI L  + GC        ++MP + DS  +N++
Sbjct: 141 KKTGLWSDLFLQNCLIGLYLKCGCLGLSRQMFDRMP-KRDSVSYNSM 186


>gi|357447703|ref|XP_003594127.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|124365519|gb|ABN09753.1| Tetratricopeptide-like helical [Medicago truncatula]
 gi|355483175|gb|AES64378.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 727

 Score =  306 bits (783), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 168/537 (31%), Positives = 284/537 (52%), Gaps = 4/537 (0%)

Query: 25  LSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRK 84
           +  +  G   EA+     +   G+     TL  ++  C+    +   + VH  L +    
Sbjct: 158 MGFVQNGFFREALEVFKDMRSCGVVPNDLTLVNVISACSHLGEVLNCRMVH-GLVVKMFV 216

Query: 85  TPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDN 144
                +S +L+  Y  C    +AR++FD++P +NL ++N ML+GYA  G++  AR LFD 
Sbjct: 217 VGLVIVSTNLMHAYCLCSGVREARRLFDEMPERNLVTWNVMLNGYAKTGLVDEARELFDG 276

Query: 145 MAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLT 204
           + ++DV+SW TMI GY + G + E L+ Y+ + +     NE     +++ C +   +   
Sbjct: 277 ICDKDVISWGTMIDGYIQKGRLREALEIYRAMLQTGHGPNEVMIVNLVSACGRGTAIVDG 336

Query: 205 RQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVL-TWTTMVSGYAK 263
            Q+HG V+  GF     I ++I+  YA CG +  A   F E   +D L +W  + +G+ K
Sbjct: 337 WQLHGTVVKRGFDCYNFIQTTIIYFYAACGMMDLACLQF-EVGVKDHLESWNALTAGFIK 395

Query: 264 LGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSC 323
            G M+ A K F++M  ++  SW+T+I+GY ++   + ALELF +M+   I+PN+ T  S 
Sbjct: 396 NGMMDHALKTFDKMHVRDVFSWSTMISGYAQSEHPKMALELFHKMLAGGIKPNEVTMVSV 455

Query: 324 LCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFD-LTDNKE 382
             A A++ +L+ GK  H ++   +   N  + ++LIDMY+KCG +N   Q F+ + D   
Sbjct: 456 FSAIATLGTLQEGKLAHEYMRSESIPFNDNLRAALIDMYAKCGSINSALQFFNQIRDEVS 515

Query: 383 NSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYF 442
           +   WN +I  L  HG+    + +F DM R  +KP+ IT   +L+AC H+GLV+ G   F
Sbjct: 516 SVSPWNAIICGLASHGHASMCLEVFSDMQRFHIKPNPITFIGVLSACCHAGLVESGKRIF 575

Query: 443 ESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGN 502
           ++M     + P+ +H+ C+I++L +AG  ++    +  MP E D  +W  L   CR HGN
Sbjct: 576 KTMKSAYNVEPDIKHYGCMIDILGRAGLLEEAEEMIRSMPMEADIVIWGTLLAACRTHGN 635

Query: 503 IDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAIS 559
           +++G +  + L    P       LLS+IY+  GK   V  VR ++  +   +E   S
Sbjct: 636 VNIGERAAENLARLAPSHGGGKVLLSNIYANAGKWEEVSFVRSVMQGQTMDREPGYS 692



 Score =  231 bits (590), Expect = 7e-58,   Method: Compositional matrix adjust.
 Identities = 148/498 (29%), Positives = 256/498 (51%), Gaps = 43/498 (8%)

Query: 59  LQQCAESKSLKLGKRVH-LHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVK 117
           L+ C+    +  G+++H L  KL       TF+ N LI+MY KCG   +A+ +FD     
Sbjct: 60  LKSCSSLSFISQGRQIHSLIFKLGLHFN--TFIQNSLINMYAKCGDIKNAQLLFDGFATL 117

Query: 118 NLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLR 177
           +  S N M+SGY   G + +AR LFD M  +  VS+ TMI+G+ ++G   E L+ +K +R
Sbjct: 118 DSVSCNIMVSGYVRNGQIDNARKLFDVMPNKGCVSYTTMIMGFVQNGFFREALEVFKDMR 177

Query: 178 RFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELS 237
              +  N+ +   +++ C  L E+   R VHG V+    +  V++S++++ AY  C  + 
Sbjct: 178 SCGVVPNDLTLVNVISACSHLGEVLNCRMVHGLVVKMFVVGLVIVSTNLMHAYCLCSGVR 237

Query: 238 DARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGL 297
           +ARRLFDE   R+++TW  M++GYAK G ++ A +LF+ + +K+ +SW T+I GY + G 
Sbjct: 238 EARRLFDEMPERNLVTWNVMLNGYAKTGLVDEARELFDGICDKDVISWGTMIDGYIQKGR 297

Query: 298 GQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSS 357
            ++ALE++  M+     PN+    + + AC    ++  G Q+HG +++  F     + ++
Sbjct: 298 LREALEIYRAMLQTGHGPNEVMIVNLVSACGRGTAIVDGWQLHGTVVKRGFDCYNFIQTT 357

Query: 358 LIDMYSKCGCLNDGRQVFD--LTDNKE-----------NSML-----------------W 387
           +I  Y+ CG ++     F+  + D+ E           N M+                 W
Sbjct: 358 IIYFYAACGMMDLACLQFEVGVKDHLESWNALTAGFIKNGMMDHALKTFDKMHVRDVFSW 417

Query: 388 NTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTH 447
           +TMIS   Q  + + A+ LFH M+   +KP+++T+  + +A    G +QEG    E M  
Sbjct: 418 STMISGYAQSEHPKMALELFHKMLAGGIKPNEVTMVSVFSAIATLGTLQEGKLAHEYMRS 477

Query: 448 DLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSY-LWNALHGVCRI--HGNID 504
           +  I  N    A LI++ A+ G  +  +    ++  E  S   WNA+  +C +  HG+  
Sbjct: 478 E-SIPFNDNLRAALIDMYAKCGSINSALQFFNQIRDEVSSVSPWNAI--ICGLASHGHAS 534

Query: 505 MGRKVVDQL----IDQNP 518
           M  +V   +    I  NP
Sbjct: 535 MCLEVFSDMQRFHIKPNP 552



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 80/272 (29%), Positives = 142/272 (52%), Gaps = 6/272 (2%)

Query: 184 NEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLF 243
           +E +    L  C  L  +   RQ+H  +   G   N  I +S+++ YAKCG++ +A+ LF
Sbjct: 52  SELALVSALKSCSSLSFISQGRQIHSLIFKLGLHFNTFIQNSLINMYAKCGDIKNAQLLF 111

Query: 244 DETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALE 303
           D     D ++   MVSGY + G +++A KLF+ MP K  VS+TT+I G+ +NG  ++ALE
Sbjct: 112 DGFATLDSVSCNIMVSGYVRNGQIDNARKLFDVMPNKGCVSYTTMIMGFVQNGFFREALE 171

Query: 304 LFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYS 363
           +F  M    + PN  T  + + AC+ +  + + + VHG +++       IV ++L+  Y 
Sbjct: 172 VFKDMRSCGVVPNDLTLVNVISACSHLGEVLNCRMVHGLVVKMFVVGLVIVSTNLMHAYC 231

Query: 364 KCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLA 423
            C  + + R++FD    + N + WN M++   + G  ++A  LF  +       D I+  
Sbjct: 232 LCSGVREARRLFDEMPER-NLVTWNVMLNGYAKTGLVDEARELFDGI----CDKDVISWG 286

Query: 424 VILNACTHSGLVQEGLTYFESMTHDLGIIPNQ 455
            +++     G ++E L  + +M    G  PN+
Sbjct: 287 TMIDGYIQKGRLREALEIYRAMLQT-GHGPNE 317


>gi|357148182|ref|XP_003574661.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Brachypodium distachyon]
          Length = 553

 Score =  306 bits (783), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 167/535 (31%), Positives = 290/535 (54%), Gaps = 41/535 (7%)

Query: 92  NHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGM-MKHARNLFDNMAERDV 150
           N  I+   + G    AR+VFD +P +++ S+N +L+     G  +  AR LFD+M  R+V
Sbjct: 11  NQRITALARAGDVAAARRVFDAMPRRDVVSWNALLTALWRAGRDLPAARRLFDDMPSRNV 70

Query: 151 VSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQ 210
           +SWN+++ G    G ++    ++    R +++    S+  +L   V+L  +     + G+
Sbjct: 71  ISWNSVVAGCLAHGDLDAASAYFARAPRRNVA----SWNAMLAGLVRLGRMDDAWALFGE 126

Query: 211 VLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTW---------------- 254
           +       NVV  +++VD  A+ GE++ AR +FD    R++++W                
Sbjct: 127 MP----QRNVVSYTTMVDGLARRGEVARAREVFDAMPERNLVSWAAMITGYVENAMFDEA 182

Query: 255 ---------------TTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQ 299
                          T M++GY K GD+ESA +LF+ +P K+ +SW  +I GY  NG G+
Sbjct: 183 RKLFEAMPDKNVVACTAMITGYCKDGDVESARRLFDGIPVKDVISWNAMITGYVHNGHGE 242

Query: 300 KALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLI 359
           +A++L   M    ++P+  T  + L AC+++  L+ G+  H    +T   S+T   ++L+
Sbjct: 243 EAMKLHIIMFREGVKPDHATLIAILTACSALALLRQGRSTHAVATKTMLESSTSFCNALM 302

Query: 360 DMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDK 419
            MYSKCG + +   VF +    ++ + WNT+I+A  QHG  ++AI LFH+M    + P+ 
Sbjct: 303 TMYSKCGNVGESELVF-MNLKIQDIVSWNTIIAAYAQHGKYQKAIALFHEMETRGLIPND 361

Query: 420 ITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLE 479
           IT+  +L+AC H G V + L  F+ M+    I P+ EH+AC++++L +AG  ++  + ++
Sbjct: 362 ITILSMLSACGHVGRVNDSLELFDLMSSKYAISPSAEHYACVVDILGRAGQLEKACSYIK 421

Query: 480 KMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRL 539
           KMP+E +  +W AL G  + HGN+ +G      L+  +  SS  + +LS+IY+A G    
Sbjct: 422 KMPFEAERNVWGALLGASKTHGNVQLGELAAKMLVQSDSVSSGPYVMLSNIYAAAGMWGE 481

Query: 540 VEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQM 594
           V +VR  + E+  KK+   SW EI NKV+ F   D+ HP  + + S L +++  M
Sbjct: 482 VNRVRGQMKEKGVKKQPGYSWTEIANKVNMFVGGDASHPEMNKIISELRKISFHM 536



 Score = 63.2 bits (152), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 64/293 (21%), Positives = 129/293 (44%), Gaps = 38/293 (12%)

Query: 18  NCLIQSFLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLH 77
           N +I  +   +  G   EA+    ++ + G++    TL  IL  C+    L+ G+  H  
Sbjct: 229 NAMITGY---VHNGHGEEAMKLHIIMFREGVKPDHATLIAILTACSALALLRQGRSTHAV 285

Query: 78  LKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKH 137
              T  ++ T+F  N L++MY KCG+  ++  VF  + ++++ S+N +++ YA  G  + 
Sbjct: 286 ATKTMLESSTSF-CNALMTMYSKCGNVGESELVFMNLKIQDIVSWNTIIAAYAQHGKYQK 344

Query: 138 ARNLFDNMAERDVVSWNTMIIGYAKS----GAVEEGLKFYKVL-RRFSISCNEFSFAGIL 192
           A  LF  M  R ++  +  I+    +    G V + L+ + ++  +++IS +   +A ++
Sbjct: 345 AIALFHEMETRGLIPNDITILSMLSACGHVGRVNDSLELFDLMSSKYAISPSAEHYACVV 404

Query: 193 TIC------------VKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDAR 240
            I             +K    +  R V G +L           +S      + GEL  A 
Sbjct: 405 DILGRAGQLEKACSYIKKMPFEAERNVWGALL----------GASKTHGNVQLGEL--AA 452

Query: 241 RLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKN-----PVSWTTL 288
           ++  ++D+     +  + + YA  G     +++  +M EK        SWT +
Sbjct: 453 KMLVQSDSVSSGPYVMLSNIYAAAGMWGEVNRVRGQMKEKGVKKQPGYSWTEI 505


>gi|242082435|ref|XP_002445986.1| hypothetical protein SORBIDRAFT_07g029130 [Sorghum bicolor]
 gi|241942336|gb|EES15481.1| hypothetical protein SORBIDRAFT_07g029130 [Sorghum bicolor]
          Length = 567

 Score =  306 bits (783), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 171/527 (32%), Positives = 278/527 (52%), Gaps = 44/527 (8%)

Query: 92  NHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGM--MKHARNLFDN-MAER 148
           N  IS   + G    AR+VFD +P +++ S+N +L+     G   +  AR LFD  M  R
Sbjct: 19  NQRISALARAGDVAAARRVFDAMPHRDVVSWNALLTALWRAGRHHLPAARRLFDEAMPSR 78

Query: 149 DVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVH 208
           DVVSWN++I G    G ++    ++    + +++      AG+L +    +  +L  ++ 
Sbjct: 79  DVVSWNSIIAGCLAHGDLDAASAYFAGAPKRNVATWNAMLAGLLRLGRADDADRLFGEMP 138

Query: 209 GQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDME 268
            +        NVV  +++VD  A+ GE++ AR +FD    R++++W  M+SGY + G   
Sbjct: 139 KR--------NVVSYTTMVDGLARRGEVARAREVFDAMPDRNLVSWAAMISGYVENGMFV 190

Query: 269 SASKLFNEMPEKNPV-------------------------------SWTTLIAGYTRNGL 297
            A+KLF  MPEKN V                               SW T+IAGY  NG 
Sbjct: 191 EATKLFEAMPEKNVVACTAMITSYCKQGDVESARRLFDGIRAKDVISWNTMIAGYVHNGH 250

Query: 298 GQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSS 357
           G++A+ L   M    ++P+  T  + L AC+++  L+ GK  H   I+    S     ++
Sbjct: 251 GEEAMRLHAVMFREGVKPDHATLIAVLTACSALALLRQGKSTHAIAIKAMLESGISFSNA 310

Query: 358 LIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKP 417
           L+ MYSKCG + +   VF +    ++ + WNT+I+A  QHG  ++ I LFH+M  + + P
Sbjct: 311 LMTMYSKCGNVGESELVF-INLRTKDIVSWNTIIAAYAQHGKYQKVIALFHEMEMTGLIP 369

Query: 418 DKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQ 477
           D IT   +L+AC H G V   L  F+ M+    I P  EH+AC++++L++AG  ++  + 
Sbjct: 370 DDITFLSVLSACGHVGKVDASLKLFDLMSSKYAISPRAEHYACIVDILSRAGQLEKASSY 429

Query: 478 LEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKG 537
           ++ MP E +  +W +L G C++HGN+ +G      L+  + +SS  + +LS+IY+A G  
Sbjct: 430 IKDMPLEAEKNVWGSLLGACQMHGNVQLGELAAKMLVQSDSESSGPYVILSNIYAAAGMW 489

Query: 538 RLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHP-MRDVL 583
             V +VR  + ER  KK+   SW EI N+VH F   D+ HP MR ++
Sbjct: 490 GQVNQVRGQMKERGVKKQPGYSWTEIANEVHMFVGGDASHPEMRKII 536



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 48/200 (24%), Positives = 97/200 (48%), Gaps = 10/200 (5%)

Query: 9   GINRKNLPN-NCLIQSFLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKS 67
           GI  K++ + N +I  +   +  G   EA+    ++ + G++    TL  +L  C+    
Sbjct: 229 GIRAKDVISWNTMIAGY---VHNGHGEEAMRLHAVMFREGVKPDHATLIAVLTACSALAL 285

Query: 68  LKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLS 127
           L+ GK  H        ++  +F SN L++MY KCG+  ++  VF  +  K++ S+N +++
Sbjct: 286 LRQGKSTHAIAIKAMLESGISF-SNALMTMYSKCGNVGESELVFINLRTKDIVSWNTIIA 344

Query: 128 GYANLGMMKHARNLFDNMAER----DVVSWNTMIIGYAKSGAVEEGLKFYKVL-RRFSIS 182
            YA  G  +    LF  M       D +++ +++      G V+  LK + ++  +++IS
Sbjct: 345 AYAQHGKYQKVIALFHEMEMTGLIPDDITFLSVLSACGHVGKVDASLKLFDLMSSKYAIS 404

Query: 183 CNEFSFAGILTICVKLEELK 202
                +A I+ I  +  +L+
Sbjct: 405 PRAEHYACIVDILSRAGQLE 424



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 47/202 (23%), Positives = 89/202 (44%), Gaps = 18/202 (8%)

Query: 248 ARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQ--KALELF 305
           AR +L     +S  A+ GD+ +A ++F+ MP ++ VSW  L+    R G      A  LF
Sbjct: 12  ARRLLRDNQRISALARAGDVAAARRVFDAMPHRDVVSWNALLTALWRAGRHHLPAARRLF 71

Query: 306 TRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKC 365
              M  R   +  +++S +  C +   L           + N  +   +++ L+    + 
Sbjct: 72  DEAMPSR---DVVSWNSIIAGCLAHGDLDAASAYFAGAPKRNVATWNAMLAGLL----RL 124

Query: 366 GCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDK--ITLA 423
           G  +D  ++F     K N + + TM+  L + G   +A  +F  M      PD+  ++ A
Sbjct: 125 GRADDADRLFGEMP-KRNVVSYTTMVDGLARRGEVARAREVFDAM------PDRNLVSWA 177

Query: 424 VILNACTHSGLVQEGLTYFESM 445
            +++    +G+  E    FE+M
Sbjct: 178 AMISGYVENGMFVEATKLFEAM 199


>gi|147806113|emb|CAN65480.1| hypothetical protein VITISV_030746 [Vitis vinifera]
          Length = 686

 Score =  306 bits (783), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 180/543 (33%), Positives = 265/543 (48%), Gaps = 69/543 (12%)

Query: 116 VKNLFSYNNMLSGY-----ANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGL 170
           + N F YN  ++       A L  M +AR LFD + + ++  WN+M  GYA+S +  E +
Sbjct: 125 IANGFQYNEYITPKLVTICATLKRMTYARQLFDQIPDPNIALWNSMFRGYAQSESYREVV 184

Query: 171 KFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAY 230
             +  ++   I  N F+F  +L  C K+  L    QVH  ++  GF  N  + ++++D Y
Sbjct: 185 FLFFQMKGMDIRPNCFTFPVVLKSCGKINALIEGEQVHCFLIKCGFRGNPFVGTTLIDMY 244

Query: 231 AKCGELSDA-------------------------------RRLFDETDARDVLTWTTMVS 259
           +  G + DA                               RRLFD    RDV+ W  MVS
Sbjct: 245 SAGGTVGDAYKIFCEMFERNVVAWTSMINGYILSADLVSARRLFDLAPERDVVLWNIMVS 304

Query: 260 GYAKLGDMESASKLF-------------------------------NEMPEKNPVSWTTL 288
           GY + GDM  A KLF                                EMPE+N  SW  L
Sbjct: 305 GYIEGGDMVEARKLFXEMPNRDVMFWNTVLKGYATNGNVEALEGLFEEMPERNIFSWNAL 364

Query: 289 IAGYTRNGLGQKALELFTRMMILR-IRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTN 347
           I GY  NGL  + L  F RM+    + PN  T  + L ACA + +L  GK VH +   + 
Sbjct: 365 IGGYAHNGLFFEVLGSFKRMLSESDVPPNDATLVTVLSACARLGALDLGKWVHVYAESSG 424

Query: 348 FRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLF 407
            + N  V ++L+DMY+KCG + +   VF   D K+  + WNT+I  L  H     A+ LF
Sbjct: 425 LKGNVYVGNALMDMYAKCGIIENAISVFRGMDTKD-LISWNTLIGGLAMHSRGADALNLF 483

Query: 408 HDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQ 467
             M  +  KPD IT   IL ACTH GLV++G  YF+SM  D  I+P  EH+ C++++LA+
Sbjct: 484 FQMKNAGQKPDGITFIGILCACTHMGLVEDGFAYFQSMADDYLIMPQIEHYGCMVDMLAR 543

Query: 468 AGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLL 527
           AG  +Q    + KMP E D  +W  L G CRI+ N+++    + +LI+  P++ A + +L
Sbjct: 544 AGRLEQAXAFVRKMPVEADGVIWAGLLGACRIYKNVELAELALQRLIELEPKNPANYVML 603

Query: 528 SSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVL 587
           S+IY   G+   V +++  + +  FKK    S IE+ + V  F   D  HP  + +Y VL
Sbjct: 604 SNIYGDAGRWEDVARLKVAMRDTGFKKLPGCSLIEVNDAVVEFYSLDERHPQIEEIYGVL 663

Query: 588 EQL 590
             L
Sbjct: 664 RGL 666



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 83/311 (26%), Positives = 147/311 (47%), Gaps = 43/311 (13%)

Query: 90  LSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERD 149
           L N ++S Y + G  V+ARK+F ++P +++  +N +L GYA  G ++    LF+ M ER+
Sbjct: 298 LWNIMVSGYIEGGDMVEARKLFXEMPNRDVMFWNTVLKGYATNGNVEALEGLFEEMPERN 357

Query: 150 VVSWNTMIIGYAKSGAVEEGL-KFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVH 208
           + SWN +I GYA +G   E L  F ++L    +  N+ +   +L+ C +L  L L + VH
Sbjct: 358 IFSWNALIGGYAHNGLFFEVLGSFKRMLSESDVPPNDATLVTVLSACARLGALDLGKWVH 417

Query: 209 GQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDME 268
                +G   NV + ++++D YAKCG + +A  +F   D +D+++W T++ G        
Sbjct: 418 VYAESSGLKGNVYVGNALMDMYAKCGIIENAISVFRGMDTKDLISWNTLIGG-------- 469

Query: 269 SASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACA 328
                               +A ++R   G  AL LF +M     +P+  TF   LCAC 
Sbjct: 470 --------------------LAMHSR---GADALNLFFQMKNAGQKPDGITFIGILCACT 506

Query: 329 SIVSLKHGKQVHGFLIRTNFRSNTIVMSS------LIDMYSKCGCLNDGRQVFDLTDNKE 382
            +     G    GF    +   + ++M        ++DM ++ G L            + 
Sbjct: 507 HM-----GLVEDGFAYFQSMADDYLIMPQIEHYGCMVDMLARAGRLEQAXAFVRKMPVEA 561

Query: 383 NSMLWNTMISA 393
           + ++W  ++ A
Sbjct: 562 DGVIWAGLLGA 572



 Score =  102 bits (255), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 82/296 (27%), Positives = 132/296 (44%), Gaps = 46/296 (15%)

Query: 202 KLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGY 261
           K   Q+  Q++  GF  N  I+  +V   A    ++ AR+LFD+    ++  W +M  GY
Sbjct: 115 KQVHQIQAQIIANGFQYNEYITPKLVTICATLKRMTYARQLFDQIPDPNIALWNSMFRGY 174

Query: 262 AKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFS 321
           A+       S+ + E+                        + LF +M  + IRPN  TF 
Sbjct: 175 AQ-------SESYREV------------------------VFLFFQMKGMDIRPNCFTFP 203

Query: 322 SCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNK 381
             L +C  I +L  G+QVH FLI+  FR N  V ++LIDMYS  G + D  ++F     +
Sbjct: 204 VVLKSCGKINALIEGEQVHCFLIKCGFRGNPFVGTTLIDMYSAGGTVGDAYKIF-CEMFE 262

Query: 382 ENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTY 441
            N + W +MI+          A RLF D+   + + D +   ++++     G + E    
Sbjct: 263 RNVVAWTSMINGYILSADLVSARRLF-DL---APERDVVLWNIMVSGYIEGGDMVEARKL 318

Query: 442 FESMTHDLGIIPNQE--HHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHG 495
           F  M       PN++      +++  A  G  + L    E+MP E + + WNAL G
Sbjct: 319 FXEM-------PNRDVMFWNTVLKGYATNGNVEALEGLFEEMP-ERNIFSWNALIG 366



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 63/255 (24%), Positives = 104/255 (40%), Gaps = 50/255 (19%)

Query: 31  GQLSEAISSLD-LLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTF 89
           G   E + S   +L++  +     TL  +L  CA   +L LGK VH++ + +  K    +
Sbjct: 372 GLFFEVLGSFKRMLSESDVPPNDATLVTVLSACARLGALDLGKWVHVYAESSGLKG-NVY 430

Query: 90  LSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMA--- 146
           + N L+ MY KCG   +A  VF  +  K+L S+N ++ G A       A NLF  M    
Sbjct: 431 VGNALMDMYAKCGIIENAISVFRGMDTKDLISWNTLIGGLAMHSRGADALNLFFQMKNAG 490

Query: 147 -ERDVVSWNTMIIGYAKSGAVEEGLKFYK------------------------------- 174
            + D +++  ++      G VE+G  +++                               
Sbjct: 491 QKPDGITFIGILCACTHMGLVEDGFAYFQSMADDYLIMPQIEHYGCMVDMLARAGRLEQA 550

Query: 175 --VLRRFSISCNEFSFAGILTIC-----VKLEELKLTRQVHGQVLVTGFLSNVVISSSIV 227
              +R+  +  +   +AG+L  C     V+L EL L R +    L     +N V+ S+I 
Sbjct: 551 XAFVRKMPVEADGVIWAGLLGACRIYKNVELAELALQRLIE---LEPKNPANYVMLSNI- 606

Query: 228 DAYAKCGELSDARRL 242
             Y   G   D  RL
Sbjct: 607 --YGDAGRWEDVARL 619


>gi|359497772|ref|XP_003635637.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like, partial [Vitis vinifera]
          Length = 629

 Score =  306 bits (783), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 180/597 (30%), Positives = 302/597 (50%), Gaps = 71/597 (11%)

Query: 15  LPNNCLIQSFLSLISKGQLSEAISSLDLLAQRGIR--LPAE-TLAFILQQCAESKSLKLG 71
           +P   L+   L +    QL  A  ++DL     +   +P   T + +L  C E   L LG
Sbjct: 11  MPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTELGLLALG 70

Query: 72  KRVH---LHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSG 128
           K++H   + L L         +   L+ MY KC +D                        
Sbjct: 71  KQLHSRVIRLGLAL----DVCVGCSLVDMYAKCAAD------------------------ 102

Query: 129 YANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVE-EGLKFYKVLRRFSISCNEFS 187
               G +  +R +F+ M E +V+SW  +I  YA+SG  + E ++ +  +    I  N FS
Sbjct: 103 ----GSVDDSRKVFEQMPEHNVMSWTAIITAYAQSGECDKEAIELFCKMISGHIRPNHFS 158

Query: 188 FAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETD 247
           F+ +L  C  L +     QV+   +  G  S   + +S                      
Sbjct: 159 FSSVLKACGNLSDPYTGEQVYSYAVKLGIASVNCVGNS---------------------- 196

Query: 248 ARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTR 307
                    ++S YA+ G ME A K F+ + EKN VS+  ++ GY +N   ++A  LF  
Sbjct: 197 ---------LISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNE 247

Query: 308 MMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGC 367
           +    I  +  TF+S L   ASI ++  G+Q+HG L++  ++SN  + ++LI MYS+CG 
Sbjct: 248 IADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALISMYSRCGN 307

Query: 368 LNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILN 427
           +    QVF+  +++ N + W +MI+   +HG+  +A+ +FH M+ +  KP++IT   +L+
Sbjct: 308 IEAAFQVFNEMEDR-NVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEITYVAVLS 366

Query: 428 ACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDS 487
           AC+H G++ EG  +F SM  + GI+P  EH+AC+++LL ++G   + M  +  MP   D+
Sbjct: 367 ACSHVGMISEGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSMPLMADA 426

Query: 488 YLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLI 547
            +W  L G CR+HGN ++GR   + +++Q P   A + LLS+++++ G+ + V K+R+ +
Sbjct: 427 LVWRTLLGACRVHGNTELGRHAAEMILEQEPDDPAAYILLSNLHASAGQWKDVVKIRKSM 486

Query: 548 NERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQMGEDAPSLDAD 604
            ER   KE   SWIE+EN+VH F V ++ HP    +Y  L+QLA ++ E     D D
Sbjct: 487 KERNLIKEAGCSWIEVENRVHRFHVGETSHPQAWQIYQELDQLASKIKEMGYIPDTD 543



 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 95/383 (24%), Positives = 182/383 (47%), Gaps = 67/383 (17%)

Query: 138 ARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVK 197
           A  +FD M ER++V+W  MI  +A+ G   + +  +  +       + F+++ +L+ C +
Sbjct: 4   AYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTE 63

Query: 198 LEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKC---GELSDARRLFDETDARDVLTW 254
           L  L L +Q+H +V+  G   +V +  S+VD YAKC   G + D+R++F++    +V++W
Sbjct: 64  LGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSW 123

Query: 255 TTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIR 314
           T +++ YA+ G+ +                              ++A+ELF +M+   IR
Sbjct: 124 TAIITAYAQSGECD------------------------------KEAIELFCKMISGHIR 153

Query: 315 PNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQV 374
           PN  +FSS L AC ++     G+QV+ + ++    S   V +SLI MY++ G + D R+ 
Sbjct: 154 PNHFSFSSVLKACGNLSDPYTGEQVYSYAVKLGIASVNCVGNSLISMYARSGRMEDARKA 213

Query: 375 FDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGL 434
           FD+   K N + +N ++    ++   E+A  LF+++  + +     T A +L+     G 
Sbjct: 214 FDILFEK-NLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIGISAFTFASLLSGAASIGA 272

Query: 435 VQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALH 494
           + +G                                 +Q+  +L K  Y+ +  + NAL 
Sbjct: 273 MGKG---------------------------------EQIHGRLLKGGYKSNQCICNALI 299

Query: 495 GVCRIHGNIDMGRKVVDQLIDQN 517
            +    GNI+   +V +++ D+N
Sbjct: 300 SMYSRCGNIEAAFQVFNEMEDRN 322


>gi|449458990|ref|XP_004147229.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
           mitochondrial-like [Cucumis sativus]
          Length = 667

 Score =  306 bits (783), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 166/506 (32%), Positives = 272/506 (53%), Gaps = 14/506 (2%)

Query: 92  NHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANL-GMMKHARNLFDNMAERDV 150
           N  I+ + +      AR VF+K+ V+   ++N MLSGY  + G +K A  LFD + E D 
Sbjct: 77  NKTIASFVRACDLESARNVFEKMSVRTTVTWNTMLSGYTKVAGKVKEAHELFDKIPEPDS 136

Query: 151 VSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQ 210
           VS+N M++ Y +S  V+  L F+          N+     I +    +       Q+   
Sbjct: 137 VSYNIMLVCYLRSYGVKAALAFF----------NKMPVKDIASWNTLISGFAQNGQMQKA 186

Query: 211 VLVTGFLS--NVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDME 268
             +   +   N V  S+++  Y + G+L  A  L+     + V+  T M++GY K G +E
Sbjct: 187 FDLFSVMPEKNGVSWSAMISGYVEHGDLEAAEELYKNVGMKSVVVETAMLTGYMKFGKVE 246

Query: 269 SASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACA 328
            A ++F  M  KN V+W ++IAGY  N   +  L++F  M+  R+RPN  + SS L  C+
Sbjct: 247 LAERIFQRMAVKNLVTWNSMIAGYVENCRAEDGLKVFKTMIESRVRPNPLSLSSVLLGCS 306

Query: 329 SIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWN 388
           ++ +L  G+Q+H  + ++    +T   +SLI MY KCG L+   ++F L   +++ + WN
Sbjct: 307 NLSALPLGRQMHQLVSKSPLSKDTTACTSLISMYCKCGDLDSAWKLF-LEMPRKDVITWN 365

Query: 389 TMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHD 448
            MIS   QHG   +A+ LF  M   ++KPD IT   ++ AC H+G V  G+ YF+SM  +
Sbjct: 366 AMISGYAQHGAGRKALHLFDKMRNGTMKPDWITFVAVILACNHAGFVDLGVQYFKSMKKE 425

Query: 449 LGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRK 508
            GI     H+ C+I+LL +AG  D+ ++ +++MP+   + ++  L G CRIH N+D+   
Sbjct: 426 FGIEAKPVHYTCVIDLLGRAGRLDEAVSLIKEMPFTPHAAIYGTLLGACRIHKNLDLAEF 485

Query: 509 VVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVH 568
               L++ +P S+  +  L++IY+A  K   V KVR+++ E    K    SWIEI++  H
Sbjct: 486 AARNLLNLDPTSATGYVQLANIYAATNKWDQVAKVRKMMKEHNVVKIPGYSWIEIKSVTH 545

Query: 569 AFSVSDSLHPMRDVLYSVLEQLAGQM 594
            F  SD LHP    ++  L +L G+M
Sbjct: 546 EFRSSDRLHPELTSIHKKLNELDGKM 571



 Score =  125 bits (314), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 91/367 (24%), Positives = 168/367 (45%), Gaps = 48/367 (13%)

Query: 71  GKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYA 130
           GK    H    +   P +   N ++  Y +      A   F+K+PVK++ S+N ++SG+A
Sbjct: 119 GKVKEAHELFDKIPEPDSVSYNIMLVCYLRSYGVKAALAFFNKMPVKDIASWNTLISGFA 178

Query: 131 NLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAG 190
             G M+ A +LF  M E++ VSW+ MI GY + G +E   + YK +   S+         
Sbjct: 179 QNGQMQKAFDLFSVMPEKNGVSWSAMISGYVEHGDLEAAEELYKNVGMKSVVVE----TA 234

Query: 191 ILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFD---ETD 247
           +LT  +K  +++L  ++  ++ V     N+V  +S++  Y +     D  ++F    E+ 
Sbjct: 235 MLTGYMKFGKVELAERIFQRMAV----KNLVTWNSMIAGYVENCRAEDGLKVFKTMIESR 290

Query: 248 AR------------------------------------DVLTWTTMVSGYAKLGDMESAS 271
            R                                    D    T+++S Y K GD++SA 
Sbjct: 291 VRPNPLSLSSVLLGCSNLSALPLGRQMHQLVSKSPLSKDTTACTSLISMYCKCGDLDSAW 350

Query: 272 KLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIV 331
           KLF EMP K+ ++W  +I+GY ++G G+KAL LF +M    ++P+  TF + + AC    
Sbjct: 351 KLFLEMPRKDVITWNAMISGYAQHGAGRKALHLFDKMRNGTMKPDWITFVAVILACNHAG 410

Query: 332 SLKHGKQVHGFLIRT-NFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTM 390
            +  G Q    + +     +  +  + +ID+  + G L++   +        ++ ++ T+
Sbjct: 411 FVDLGVQYFKSMKKEFGIEAKPVHYTCVIDLLGRAGRLDEAVSLIKEMPFTPHAAIYGTL 470

Query: 391 ISALTQH 397
           + A   H
Sbjct: 471 LGACRIH 477



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 84/334 (25%), Positives = 153/334 (45%), Gaps = 53/334 (15%)

Query: 218 SNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKL-GDMESASKL--- 273
           S+VV  +  + ++ +  +L  AR +F++   R  +TW TM+SGY K+ G ++ A +L   
Sbjct: 71  SDVVSLNKTIASFVRACDLESARNVFEKMSVRTTVTWNTMLSGYTKVAGKVKEAHELFDK 130

Query: 274 ----------------------------FNEMPEKNPVSWTTLIAGYTRNGLGQKALELF 305
                                       FN+MP K+  SW TLI+G+ +NG  QKA +LF
Sbjct: 131 IPEPDSVSYNIMLVCYLRSYGVKAALAFFNKMPVKDIASWNTLISGFAQNGQMQKAFDLF 190

Query: 306 TRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKC 365
           + M       N  ++S+ +        L+  ++    L +     + +V ++++  Y K 
Sbjct: 191 SVMP----EKNGVSWSAMISGYVEHGDLEAAEE----LYKNVGMKSVVVETAMLTGYMKF 242

Query: 366 GCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVI 425
           G +    ++F     K N + WN+MI+   ++   E  +++F  M+ S V+P+ ++L+ +
Sbjct: 243 GKVELAERIFQRMAVK-NLVTWNSMIAGYVENCRAEDGLKVFKTMIESRVRPNPLSLSSV 301

Query: 426 LNACTHSGLVQEGLTYFESMTHDLGIIP-NQEHHAC--LIELLAQAGCSDQLMNQLEKMP 482
           L  C++   +  G      M   +   P +++  AC  LI +  + G  D       +MP
Sbjct: 302 LLGCSNLSALPLG----RQMHQLVSKSPLSKDTTACTSLISMYCKCGDLDSAWKLFLEMP 357

Query: 483 YEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQ 516
            + D   WNA+      HG    GRK +  L D+
Sbjct: 358 RK-DVITWNAMISGYAQHG---AGRKAL-HLFDK 386


>gi|357519003|ref|XP_003629790.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355523812|gb|AET04266.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 908

 Score =  306 bits (783), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 203/711 (28%), Positives = 340/711 (47%), Gaps = 143/711 (20%)

Query: 32  QLSEAISSLDLLAQ-RGIRLPAETLAFILQQCAESKSLKLGKRVH-------------LH 77
           ++ +  ++++LL + +   L   +   +LQ CAE KSL+ GKRVH             L 
Sbjct: 73  EMGDLRNAIELLTKSKSYELGLNSYCSVLQLCAEKKSLEDGKRVHSVIISNGISVDEALG 132

Query: 78  LKLT-----------QRK------TPTTFLSNHLISMYFKCGSDVDARKVFDKIP----V 116
            KL             RK          FL N L+S Y K G+  ++  +F K+     V
Sbjct: 133 AKLVFMYVNCGDLVQGRKIFDKIMNDKVFLWNLLMSEYAKIGNFRESVSLFKKMQKLGVV 192

Query: 117 KNLFSY-----------------------------------NNMLSGYANLGMMKHARNL 141
            N +++                                   N++++ Y   G ++ A NL
Sbjct: 193 GNCYTFTCVLKCFAALGKVKECKRVHGYVLKLGFGSNTAVVNSLIAAYFKFGGVESAHNL 252

Query: 142 FDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEEL 201
           FD ++E DVVSWN+MI G   +G    GL+ +  +    +  +  +   +L  C  +  L
Sbjct: 253 FDELSEPDVVSWNSMINGCVVNGFSGNGLEIFIQMLILGVEVDLTTLVSVLVACANIGNL 312

Query: 202 KLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGEL------------------------- 236
            L R +HG  +   F   VV S++++D Y+KCG L                         
Sbjct: 313 SLGRALHGFGVKACFSEEVVFSNTLLDMYSKCGNLNGATEVFVKMGDTTIVSWTSIIAAY 372

Query: 237 ------SDARRLFDETDAR----DVLTWTTMVSG-------------------------- 260
                 SDA  LFDE  ++    D+ T T++V                            
Sbjct: 373 VREGLYSDAIGLFDEMQSKGVRPDIYTVTSIVHACACSSSLDKGRDVHSYVIKNGMGSNL 432

Query: 261 ---------YAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMIL 311
                    YAK G +E A  +F+++P K+ VSW T+I GY++N L  +ALELF  M   
Sbjct: 433 PVTNALINMYAKCGSVEEARLVFSKIPVKDIVSWNTMIGGYSQNLLPNEALELFLDMQ-K 491

Query: 312 RIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDG 371
           + +P+  T +  L ACA + +L  G+++HG ++R  + S+  V  +L+DMY+KCG L   
Sbjct: 492 QFKPDDITMACVLPACAGLAALDKGREIHGHILRRGYFSDLHVACALVDMYAKCGLLVLA 551

Query: 372 RQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTH 431
           + +FD+   K++ + W  MI+    HG+  +AI  F++M  + ++PD+ + + ILNAC+H
Sbjct: 552 QLLFDMIP-KKDLISWTVMIAGYGMHGFGNEAISTFNEMRIAGIEPDESSFSAILNACSH 610

Query: 432 SGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWN 491
           SGL+ EG  +F SM ++ G+ P  EH+AC+++LLA+ G   +    +E MP + D+ +W 
Sbjct: 611 SGLLNEGWKFFNSMRNECGVEPKLEHYACVVDLLARMGNLSKAYKFIESMPIKPDTTIWG 670

Query: 492 ALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQ 551
            L   CRIH ++ +  KV + + +  P ++  + +L+++Y+   K   V+K+R+ + +R 
Sbjct: 671 VLLSGCRIHHDVKLAEKVAEHIFELEPDNTRYYVVLANVYAEAEKWEEVKKLRKRMQKRG 730

Query: 552 FKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQM-GEDAPSL 601
           FK+    SWIE+  K + F   +S HP    +  +L +L  QM  ED  S+
Sbjct: 731 FKQNPGCSWIEVGGKFNIFVAGNSKHPQAKKIDVLLSKLTMQMQNEDYSSM 781



 Score =  139 bits (350), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 105/411 (25%), Positives = 183/411 (44%), Gaps = 71/411 (17%)

Query: 21  IQSFLSLIS----KGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHL 76
           I S+ S+I+    +G  S+AI   D +  +G+R    T+  I+  CA S SL  G+ VH 
Sbjct: 362 IVSWTSIIAAYVREGLYSDAIGLFDEMQSKGVRPDIYTVTSIVHACACSSSLDKGRDVHS 421

Query: 77  HLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMK 136
           ++ +         ++N LI+MY KCGS  +AR VF KIPVK++ S+N M+ GY+   +  
Sbjct: 422 YV-IKNGMGSNLPVTNALINMYAKCGSVEEARLVFSKIPVKDIVSWNTMIGGYSQNLLPN 480

Query: 137 HARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICV 196
            A  LF +M ++                                   ++ + A +L  C 
Sbjct: 481 EALELFLDMQKQ--------------------------------FKPDDITMACVLPACA 508

Query: 197 KLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTT 256
            L  L   R++HG +L  G+ S++ ++ ++VD YAKCG L  A+ LFD    +D+++WT 
Sbjct: 509 GLAALDKGREIHGHILRRGYFSDLHVACALVDMYAKCGLLVLAQLLFDMIPKKDLISWTV 568

Query: 257 MVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPN 316
           M++GY                                 +G G +A+  F  M I  I P+
Sbjct: 569 MIAGYG-------------------------------MHGFGNEAISTFNEMRIAGIEPD 597

Query: 317 QHTFSSCLCACASIVSLKHG-KQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVF 375
           + +FS+ L AC+    L  G K  +               + ++D+ ++ G L+   +  
Sbjct: 598 ESSFSAILNACSHSGLLNEGWKFFNSMRNECGVEPKLEHYACVVDLLARMGNLSKAYKFI 657

Query: 376 DLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVIL 426
           +    K ++ +W  ++S    H   + A ++   +    ++PD     V+L
Sbjct: 658 ESMPIKPDTTIWGVLLSGCRIHHDVKLAEKVAEHIFE--LEPDNTRYYVVL 706


>gi|359482590|ref|XP_002284545.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Vitis vinifera]
          Length = 648

 Score =  306 bits (783), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 166/541 (30%), Positives = 285/541 (52%), Gaps = 65/541 (12%)

Query: 56  AFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIP 115
           A +LQ C   K++K GK++H  + L      T  ++  L+++Y  C S            
Sbjct: 79  ASLLQSCIARKAIKPGKQLHAQVCLAGFGFDTV-IATKLVNLYCVCDS------------ 125

Query: 116 VKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKV 175
                              +  AR LFD + + ++  WN +I GYA +G  E  ++ Y  
Sbjct: 126 -------------------LSSARLLFDRIPKHNIFLWNVLIRGYAWNGPYEAAVQLYYQ 166

Query: 176 LRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGE 235
           +  + +  + F+F  +L  C  L  ++  R++H  V+ TG+  +V + ++++D Y     
Sbjct: 167 MFDYGLVPDNFTFPFVLKACAALSAIEHGREIHEHVVQTGWEKDVFVGAALIDMY----- 221

Query: 236 LSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRN 295
                                     AK G + SA ++F+++  ++ V W +++A Y++N
Sbjct: 222 --------------------------AKCGCVGSAREVFDKILVRDAVLWNSMLAAYSQN 255

Query: 296 GLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVM 355
           G     L L + M++  +RP + T  + + A A   +L  G+++HG   R  F S+  V 
Sbjct: 256 GHPDACLSLCSEMVLTGLRPTEATLVTAISASADNAALPQGRELHGLSWRQEFESHDKVK 315

Query: 356 SSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSV 415
           ++L+DMY+KCG +   R +F+    K   + WN MI+    HG+  +A+ LF +M R + 
Sbjct: 316 TALVDMYAKCGSVRVARNLFERLGVKR-VVSWNAMITGYAMHGHATEALDLFEEMNRVA- 373

Query: 416 KPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLM 475
           KPD IT   +L+AC+H GL++EG  +FE+M  D  I P  +H+ C+++LL  +G  D+  
Sbjct: 374 KPDHITFVGVLSACSHGGLLEEGWMFFETMIRDYKIDPTVQHYTCMVDLLGHSGRLDEAY 433

Query: 476 NQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALG 535
           N + +M    DS +W AL   C+IH N+++G   +++LI+  P  +  + +LS+IY+  G
Sbjct: 434 NLIMQMKVLPDSGVWGALLNSCKIHANVELGEIALERLIELEPDDAGNYVILSNIYAQAG 493

Query: 536 KGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQMG 595
           K   V K+R+L+ +R+ KK  A SWIE++NKVHAF   D+ HP+ D +YS LE++ G M 
Sbjct: 494 KWEGVAKLRKLMTDRRLKKSIACSWIEVKNKVHAFLSGDTSHPLSDEIYSELERVGGLMK 553

Query: 596 E 596
           E
Sbjct: 554 E 554



 Score =  152 bits (383), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 94/360 (26%), Positives = 176/360 (48%), Gaps = 45/360 (12%)

Query: 187 SFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDET 246
           ++A +L  C+  + +K  +Q+H QV + GF  + VI++ +V+ Y  C  LS AR LFD  
Sbjct: 77  NYASLLQSCIARKAIKPGKQLHAQVCLAGFGFDTVIATKLVNLYCVCDSLSSARLLFDRI 136

Query: 247 DARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFT 306
              ++  W  ++ GYA                      W         NG  + A++L+ 
Sbjct: 137 PKHNIFLWNVLIRGYA----------------------W---------NGPYEAAVQLYY 165

Query: 307 RMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCG 366
           +M    + P+  TF   L ACA++ +++HG+++H  +++T +  +  V ++LIDMY+KCG
Sbjct: 166 QMFDYGLVPDNFTFPFVLKACAALSAIEHGREIHEHVVQTGWEKDVFVGAALIDMYAKCG 225

Query: 367 CLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVIL 426
           C+   R+VFD    ++ ++LWN+M++A +Q+G+ +  + L  +MV + ++P + TL   +
Sbjct: 226 CVGSAREVFDKILVRD-AVLWNSMLAAYSQNGHPDACLSLCSEMVLTGLRPTEATLVTAI 284

Query: 427 NACTHSGLVQEGLTYFESMTHDLGIIPNQEHH----ACLIELLAQAGCSDQLMNQLEKMP 482
           +A   +  + +G        H L      E H      L+++ A+ G      N  E++ 
Sbjct: 285 SASADNAALPQG-----RELHGLSWRQEFESHDKVKTALVDMYAKCGSVRVARNLFERLG 339

Query: 483 YEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEK 542
            +     WNA+     +HG+     + +D   + N  +   H     + SA   G L+E+
Sbjct: 340 VKR-VVSWNAMITGYAMHGH---ATEALDLFEEMNRVAKPDHITFVGVLSACSHGGLLEE 395



 Score = 99.4 bits (246), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 71/259 (27%), Positives = 120/259 (46%), Gaps = 35/259 (13%)

Query: 54  TLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDK 113
           T  F+L+ CA   +++ G+ +H H+  T  +    F+   LI MY KCG    AR+VFDK
Sbjct: 178 TFPFVLKACAALSAIEHGREIHEHVVQTGWEK-DVFVGAALIDMYAKCGCVGSAREVFDK 236

Query: 114 IPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFY 173
           I V++   +N+ML+ Y+  G      +L   M                    V  GL+  
Sbjct: 237 ILVRDAVLWNSMLAAYSQNGHPDACLSLCSEM--------------------VLTGLRPT 276

Query: 174 KVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKC 233
           +     +IS +  + A           L   R++HG      F S+  + +++VD YAKC
Sbjct: 277 EATLVTAISASADNAA-----------LPQGRELHGLSWRQEFESHDKVKTALVDMYAKC 325

Query: 234 GELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEM---PEKNPVSWTTLIA 290
           G +  AR LF+    + V++W  M++GYA  G    A  LF EM    + + +++  +++
Sbjct: 326 GSVRVARNLFERLGVKRVVSWNAMITGYAMHGHATEALDLFEEMNRVAKPDHITFVGVLS 385

Query: 291 GYTRNGLGQKALELFTRMM 309
             +  GL ++    F  M+
Sbjct: 386 ACSHGGLLEEGWMFFETMI 404



 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 51/202 (25%), Positives = 95/202 (47%), Gaps = 3/202 (1%)

Query: 313 IRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGR 372
           + P    ++S L +C +  ++K GKQ+H  +    F  +T++ + L+++Y  C  L+  R
Sbjct: 71  LTPTYSNYASLLQSCIARKAIKPGKQLHAQVCLAGFGFDTVIATKLVNLYCVCDSLSSAR 130

Query: 373 QVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHS 432
            +FD    K N  LWN +I     +G  E A++L++ M    + PD  T   +L AC   
Sbjct: 131 LLFDRIP-KHNIFLWNVLIRGYAWNGPYEAAVQLYYQMFDYGLVPDNFTFPFVLKACAAL 189

Query: 433 GLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNA 492
             ++ G    E +    G   +    A LI++ A+ GC        +K+    D+ LWN+
Sbjct: 190 SAIEHGREIHEHVVQT-GWEKDVFVGAALIDMYAKCGCVGSAREVFDKI-LVRDAVLWNS 247

Query: 493 LHGVCRIHGNIDMGRKVVDQLI 514
           +      +G+ D    +  +++
Sbjct: 248 MLAAYSQNGHPDACLSLCSEMV 269



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 69/270 (25%), Positives = 129/270 (47%), Gaps = 14/270 (5%)

Query: 20  LIQSFLSLISK-GQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHL 78
           L  S L+  S+ G     +S    +   G+R    TL   +   A++ +L  G+ +H  L
Sbjct: 244 LWNSMLAAYSQNGHPDACLSLCSEMVLTGLRPTEATLVTAISASADNAALPQGRELH-GL 302

Query: 79  KLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHA 138
              Q       +   L+ MY KCGS   AR +F+++ VK + S+N M++GYA  G    A
Sbjct: 303 SWRQEFESHDKVKTALVDMYAKCGSVRVARNLFERLGVKRVVSWNAMITGYAMHGHATEA 362

Query: 139 RNLFDNM---AERDVVSWNTMIIGYAKSGAVEEGLKFYK-VLRRFSISCNEFSFAGILTI 194
            +LF+ M   A+ D +++  ++   +  G +EEG  F++ ++R + I      +  ++ +
Sbjct: 363 LDLFEEMNRVAKPDHITFVGVLSACSHGGLLEEGWMFFETMIRDYKIDPTVQHYTCMVDL 422

Query: 195 ---CVKLEE-LKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARD 250
                +L+E   L  Q+  +VL    +   +++S  + A  + GE++  R +  E D  D
Sbjct: 423 LGHSGRLDEAYNLIMQM--KVLPDSGVWGALLNSCKIHANVELGEIALERLIELEPD--D 478

Query: 251 VLTWTTMVSGYAKLGDMESASKLFNEMPEK 280
              +  + + YA+ G  E  +KL   M ++
Sbjct: 479 AGNYVILSNIYAQAGKWEGVAKLRKLMTDR 508


>gi|21741755|emb|CAD39781.1| OSJNBa0060B20.9 [Oryza sativa Japonica Group]
          Length = 897

 Score =  306 bits (783), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 184/596 (30%), Positives = 316/596 (53%), Gaps = 45/596 (7%)

Query: 31  GQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLT--QRKTPTT 88
           G L EA    D + QRGI    + +++     A  KS      + L  K+T    + PT 
Sbjct: 211 GSLEEASMIFDEITQRGID---DVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTN 267

Query: 89  FLSN--HLISMYFKCGS--DVDARKVFDKIPVKN-----LFSYNNMLSGYANLGMMKHAR 139
             S+   ++++   CGS   V   K      ++N     +F  N ++  YA  G+M++A 
Sbjct: 268 ERSDIISIVNILPACGSLKAVPQTKEVHGNAIRNGTFPDVFVGNALIDAYAKCGLMENAV 327

Query: 140 NLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSF----AGILTIC 195
            +F+ M  +DVVSWN M+ GY++SG  E   + +K +R+ +I  +  ++    AG     
Sbjct: 328 KVFNMMEFKDVVSWNAMVAGYSQSGNFEAAFELFKNMRKENIPLDVVTWTAVIAGYSQRG 387

Query: 196 VKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRL------------- 242
              E L L RQ+    + +G L N V   S++ A A  G  S    +             
Sbjct: 388 CSHEALNLFRQM----IFSGSLPNCVTIISVLSACASLGAFSQGTEIHAYSLKNCLLTLD 443

Query: 243 --FDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMP--EKNPVSWTTLIAGYTRNGLG 298
             F   D  D++ +  ++  Y+K    ++A  +F+++P  E+N V+WT +I G+ + G  
Sbjct: 444 NDFGGED-EDLMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDS 502

Query: 299 QKALELFTRMM--ILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNF--RSNTIV 354
             AL+LF  M+     + PN +T S  L ACA + +++ GKQ+H +++R +    S   V
Sbjct: 503 NDALKLFVEMISEPYGVAPNAYTISCILMACAHLAAIRIGKQIHAYVLRHHRYESSAYFV 562

Query: 355 MSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSS 414
            + LIDMYSKCG ++  R VFD    K +++ W +M++    HG   +A+ +F  M ++ 
Sbjct: 563 ANCLIDMYSKCGDVDTARHVFDSMSQK-SAISWTSMMTGYGMHGRGSEALDIFDKMRKAG 621

Query: 415 VKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQL 474
             PD IT  V+L AC+H G+V +GL+YF+SM+ D G+ P  EH+AC I+LLA++G  D+ 
Sbjct: 622 FVPDDITFLVVLYACSHCGMVDQGLSYFDSMSADYGLTPRAEHYACAIDLLARSGRLDKA 681

Query: 475 MNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSAL 534
              ++ MP E  + +W AL   CR+H N+++    +++L++ N ++  ++ L+S+IY+  
Sbjct: 682 WRTVKDMPMEPTAVVWVALLSACRVHSNVELAEHALNKLVEMNAENDGSYTLISNIYATA 741

Query: 535 GKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQL 590
           G+ + V ++R L+ +   KK    SW++ +    +F V D  HP+   +Y++LE L
Sbjct: 742 GRWKDVARIRHLMKKSGIKKRPGCSWVQGQKGTASFFVGDRSHPLSPQIYALLESL 797



 Score =  205 bits (522), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 141/518 (27%), Positives = 242/518 (46%), Gaps = 70/518 (13%)

Query: 28  ISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPT 87
           I +G+L  AI+    + + G R    TL  +L+ C E  S + G   H  L         
Sbjct: 138 IKQGRLDSAINVSCRMLRAGTRPDHFTLPHVLKACGELPSYRCGSAFH-GLICCNGFESN 196

Query: 88  TFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAE 147
            F+ N L++MY +CGS  +A  +FD+I  + +                            
Sbjct: 197 VFICNALVAMYSRCGSLEEASMIFDEITQRGI---------------------------- 228

Query: 148 RDVVSWNTMIIGYAKSGAVEEGLKFYK--VLRRFSISCNE----FSFAGILTICVKLEEL 201
            DV+SWN+++  + KS      L  +    L       NE     S   IL  C  L+ +
Sbjct: 229 DDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIVNILPACGSLKAV 288

Query: 202 KLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGY 261
             T++VHG  +  G   +V + ++++DAYAKCG + +A ++F+  + +DV++W  MV+GY
Sbjct: 289 PQTKEVHGNAIRNGTFPDVFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVSWNAMVAGY 348

Query: 262 AKLGDMESASKLFNEMPEKN----PVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQ 317
           ++ G+ E+A +LF  M ++N     V+WT +IAGY++ G   +AL LF +M+     PN 
Sbjct: 349 SQSGNFEAAFELFKNMRKENIPLDVVTWTAVIAGYSQRGCSHEALNLFRQMIFSGSLPNC 408

Query: 318 HTFSSCLCACASIVSLKHGKQVHGFLIRTNFRS----------NTIVMSSLIDMYSKCGC 367
            T  S L ACAS+ +   G ++H + ++    +          + +V ++LIDMYSKC  
Sbjct: 409 VTIISVLSACASLGAFSQGTEIHAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCRS 468

Query: 368 LNDGRQVF-DLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRS--SVKPDKITLAV 424
               R +F D+   + N + W  MI    Q+G    A++LF +M+     V P+  T++ 
Sbjct: 469 FKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEPYGVAPNAYTISC 528

Query: 425 ILNACTHSGLVQEGLTY---------FESMTHDLGIIPNQEHHACLIELLAQAGCSDQLM 475
           IL AC H   ++ G            +ES  +    + N     CLI++ ++ G  D   
Sbjct: 529 ILMACAHLAAIRIGKQIHAYVLRHHRYESSAY---FVAN-----CLIDMYSKCGDVDTAR 580

Query: 476 NQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQL 513
           +  + M  +  +  W ++     +HG       + D++
Sbjct: 581 HVFDSMS-QKSAISWTSMMTGYGMHGRGSEALDIFDKM 617



 Score =  135 bits (341), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 88/339 (25%), Positives = 157/339 (46%), Gaps = 42/339 (12%)

Query: 125 MLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCN 184
           +++ Y   G   +A  + + +     V WN +I  + K G ++  +     + R     +
Sbjct: 102 VVASYLACGATDYALLVLERVTPSPAVWWNLLIREHIKQGRLDSAINVSCRMLRAGTRPD 161

Query: 185 EFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFD 244
            F+   +L  C +L   +     HG +   GF SNV I +++V  Y++CG L +A  +FD
Sbjct: 162 HFTLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSLEEASMIFD 221

Query: 245 ETDAR---DVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKA 301
           E   R   DV++W ++VS + K  +                 +WT              A
Sbjct: 222 EITQRGIDDVISWNSIVSAHVKSSN-----------------AWT--------------A 250

Query: 302 LELFTRM-MILRIRPNQH-----TFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVM 355
           L+LF++M +I+  +P        +  + L AC S+ ++   K+VHG  IR     +  V 
Sbjct: 251 LDLFSKMTLIVHEKPTNERSDIISIVNILPACGSLKAVPQTKEVHGNAIRNGTFPDVFVG 310

Query: 356 SSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSV 415
           ++LID Y+KCG + +  +VF++ + K+  + WN M++  +Q G  E A  LF +M + ++
Sbjct: 311 NALIDAYAKCGLMENAVKVFNMMEFKD-VVSWNAMVAGYSQSGNFEAAFELFKNMRKENI 369

Query: 416 KPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPN 454
             D +T   ++   +  G   E L  F  M    G +PN
Sbjct: 370 PLDVVTWTAVIAGYSQRGCSHEALNLFRQMIFS-GSLPN 407



 Score = 85.5 bits (210), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 69/290 (23%), Positives = 122/290 (42%), Gaps = 11/290 (3%)

Query: 255 TTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIR 314
           T +V+ Y   G  + A  +   +     V W  LI  + + G    A+ +  RM+    R
Sbjct: 100 TGVVASYLACGATDYALLVLERVTPSPAVWWNLLIREHIKQGRLDSAINVSCRMLRAGTR 159

Query: 315 PNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQV 374
           P+  T    L AC  + S + G   HG +    F SN  + ++L+ MYS+CG L +   +
Sbjct: 160 PDHFTLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSLEEASMI 219

Query: 375 FDLTDNK--ENSMLWNTMISALTQHGYDEQAIRLFHDMV------RSSVKPDKITLAVIL 426
           FD    +  ++ + WN+++SA  +      A+ LF  M        ++ + D I++  IL
Sbjct: 220 FDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIVNIL 279

Query: 427 NACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHD 486
            AC     V +      +   + G  P+      LI+  A+ G  +  +     M ++ D
Sbjct: 280 PACGSLKAVPQTKEVHGNAIRN-GTFPDVFVGNALIDAYAKCGLMENAVKVFNMMEFK-D 337

Query: 487 SYLWNALHGVCRIHGNIDMGRKVVDQLIDQN-PQSSATHGLLSSIYSALG 535
              WNA+       GN +   ++   +  +N P    T   + + YS  G
Sbjct: 338 VVSWNAMVAGYSQSGNFEAAFELFKNMRKENIPLDVVTWTAVIAGYSQRG 387


>gi|357133503|ref|XP_003568364.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g20540-like [Brachypodium distachyon]
          Length = 554

 Score =  305 bits (782), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 171/546 (31%), Positives = 287/546 (52%), Gaps = 42/546 (7%)

Query: 59  LQQCAESKSLKLGKRVHLH---LKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIP 115
           L+ CA  + L    RVH H   L L+Q    +++L+  ++ +    G    A +VF ++ 
Sbjct: 20  LRACASFRDLL---RVHAHAVRLSLSQ----SSYLATQIVHLCNAHGRVAHATRVFSQVR 72

Query: 116 VKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKV 175
             NL  +N M+  YA       A  ++  M  R    W                      
Sbjct: 73  EPNLHLHNAMIKAYAQNHRHLDAITVYIRMLRRRPFPW---------------------- 110

Query: 176 LRRFSISC---NEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAK 232
                ISC   + F++  +L  C  L  L L +QVHG V+ +G  SN ++ +S+++ Y +
Sbjct: 111 -----ISCTGGDRFTYPFLLKACGGLMALDLGKQVHGHVVRSGCESNAIVQNSLIEMYTR 165

Query: 233 CGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGY 292
            G+L  AR++FD    RDV++W T++S +A+LG M  A  +FN MP+K  VSWT L++GY
Sbjct: 166 AGDLVLARKVFDGMQERDVVSWNTVISAHARLGQMRKARAVFNSMPDKTVVSWTALVSGY 225

Query: 293 TRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNT 352
           T  G    A+E F  M +    P+  +  + L ACA + +L+ G+ ++ +  R      T
Sbjct: 226 TAAGDFSGAVEAFRLMQMEGFEPDDVSIVAVLPACAQLGALELGRWIYAYCNRHQMLRET 285

Query: 353 IVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVR 412
            V ++L++MY+KCGC++   Q+F+    K+  + W+TM+  L  HG  ++A++LF +M R
Sbjct: 286 YVCNALVEMYAKCGCIDQALQLFNGMAEKD-VISWSTMVGGLAAHGRAQEAVQLFTEMER 344

Query: 413 -SSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCS 471
             +VKP+ IT   +L+AC+H+GL+ EGL YF+ M    GI P  EH+ C+++LL ++G  
Sbjct: 345 QGTVKPNGITFVGLLSACSHAGLLDEGLDYFDRMNDVYGIEPGVEHYGCIVDLLCRSGQI 404

Query: 472 DQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIY 531
            + ++ +  MP   D+ +W ++   CR HG++D      ++L+   P+      +L+++Y
Sbjct: 405 QRTLDLISDMPLPADAKIWGSVLNACRSHGDVDTAVLAAERLVALEPEDVGNLVMLANVY 464

Query: 532 SALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLA 591
           +A  +   V   R+ I  R  +K    S IE++N V  F   + L P    L  VL+ LA
Sbjct: 465 AAARRWSEVANTRKAIRSRSMRKTPGCSLIEVDNVVQEFVAGEDLKPEFGGLSGVLDILA 524

Query: 592 GQMGED 597
            Q+ +D
Sbjct: 525 SQLADD 530



 Score =  155 bits (391), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 81/260 (31%), Positives = 145/260 (55%), Gaps = 6/260 (2%)

Query: 54  TLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDK 113
           T  F+L+ C    +L LGK+VH H+  +  ++    + N LI MY + G  V ARKVFD 
Sbjct: 120 TYPFLLKACGGLMALDLGKQVHGHVVRSGCES-NAIVQNSLIEMYTRAGDLVLARKVFDG 178

Query: 114 IPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFY 173
           +  +++ S+N ++S +A LG M+ AR +F++M ++ VVSW  ++ GY  +G     ++ +
Sbjct: 179 MQERDVVSWNTVISAHARLGQMRKARAVFNSMPDKTVVSWTALVSGYTAAGDFSGAVEAF 238

Query: 174 KVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKC 233
           ++++      ++ S   +L  C +L  L+L R ++        L    + +++V+ YAKC
Sbjct: 239 RLMQMEGFEPDDVSIVAVLPACAQLGALELGRWIYAYCNRHQMLRETYVCNALVEMYAKC 298

Query: 234 GELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEK-----NPVSWTTL 288
           G +  A +LF+    +DV++W+TMV G A  G  + A +LF EM  +     N +++  L
Sbjct: 299 GCIDQALQLFNGMAEKDVISWSTMVGGLAAHGRAQEAVQLFTEMERQGTVKPNGITFVGL 358

Query: 289 IAGYTRNGLGQKALELFTRM 308
           ++  +  GL  + L+ F RM
Sbjct: 359 LSACSHAGLLDEGLDYFDRM 378



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 42/169 (24%), Positives = 85/169 (50%), Gaps = 11/169 (6%)

Query: 14  NLPNNCLIQSFLSLIS----KGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLK 69
           ++P+  ++ S+ +L+S     G  S A+ +  L+   G      ++  +L  CA+  +L+
Sbjct: 209 SMPDKTVV-SWTALVSGYTAAGDFSGAVEAFRLMQMEGFEPDDVSIVAVLPACAQLGALE 267

Query: 70  LGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGY 129
           LG+ ++ +    Q     T++ N L+ MY KCG    A ++F+ +  K++ S++ M+ G 
Sbjct: 268 LGRWIYAYCNRHQ-MLRETYVCNALVEMYAKCGCIDQALQLFNGMAEKDVISWSTMVGGL 326

Query: 130 ANLGMMKHARNLFDNMAERDVVSWN-----TMIIGYAKSGAVEEGLKFY 173
           A  G  + A  LF  M  +  V  N      ++   + +G ++EGL ++
Sbjct: 327 AAHGRAQEAVQLFTEMERQGTVKPNGITFVGLLSACSHAGLLDEGLDYF 375


>gi|297804490|ref|XP_002870129.1| hypothetical protein ARALYDRAFT_329829 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297315965|gb|EFH46388.1| hypothetical protein ARALYDRAFT_329829 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 853

 Score =  305 bits (782), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 162/492 (32%), Positives = 259/492 (52%), Gaps = 60/492 (12%)

Query: 105 VDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSG 164
           ++A ++FD+IP  + FSYN MLS Y   G  + A++ F+ M  +D  SWNTMI GYA+ G
Sbjct: 110 MEAHQLFDEIPEPDTFSYNIMLSCYVRNGNFEKAQSFFNRMPFKDAASWNTMITGYARRG 169

Query: 165 AVEEG-LKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVIS 223
            +E+  + FY ++ +  +S N                                       
Sbjct: 170 EMEKARVLFYSMMEKNEVSWN--------------------------------------- 190

Query: 224 SSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMP-EKNP 282
            +++  Y +CG+L  A   F     R V+ WT M++GY K   +E A  +F +M  +KN 
Sbjct: 191 -AMISGYIECGDLEKAAHFFKAAPFRGVVAWTAMITGYMKAKKVELAEAMFKDMTVKKNL 249

Query: 283 VSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGF 342
           V+W  +I+GY  N   +  L+LF  M+   IRPN    SS L  C+ + +L  G+Q+H  
Sbjct: 250 VTWNAMISGYVENSRPEDGLKLFRAMLEEGIRPNSSGLSSALLGCSELSALCLGRQIHQ- 308

Query: 343 LIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQ 402
                           I MY KCG L D  ++F+    K++ + WN MIS   QHG  E+
Sbjct: 309 ----------------IVMYCKCGELGDAWKLFEAM-KKKDVVAWNAMISGYAQHGNAEK 351

Query: 403 AIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLI 462
           A+ LFH+M  S  KPD IT   +L AC H+GLV  G+TYF+SM  D  + P  +H+ C++
Sbjct: 352 ALCLFHEMRDSKTKPDWITFVAVLLACNHAGLVDIGMTYFDSMVRDYRVEPRPDHYTCMV 411

Query: 463 ELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSA 522
           +LL +AG  ++ +  +  MP+   + ++  L G CR+H N+++     ++L++ +P+++A
Sbjct: 412 DLLGRAGKVEEALKLIRSMPFRPHAAVFGTLLGACRVHKNVELAEFAAEKLLELDPRNAA 471

Query: 523 THGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDV 582
            +  L++IY++      V +VR+ + E    K    SWIEI NK+H F  SD +HP  D 
Sbjct: 472 GYVQLANIYASKNLWEDVARVRKRMKESNVVKVPGYSWIEIRNKIHHFRSSDRIHPELDS 531

Query: 583 LYSVLEQLAGQM 594
           ++  L++L  +M
Sbjct: 532 IHKKLKELERKM 543



 Score =  115 bits (288), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 82/291 (28%), Positives = 135/291 (46%), Gaps = 61/291 (20%)

Query: 86  PTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNM 145
           P TF  N ++S Y + G+   A+  F+++P K+  S+N M++GYA  G M+ AR LF +M
Sbjct: 122 PDTFSYNIMLSCYVRNGNFEKAQSFFNRMPFKDAASWNTMITGYARRGEMEKARVLFYSM 181

Query: 146 AERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTR 205
            E++ VSWN MI GY + G +E+   F+K      +     ++  ++T  +K ++++L  
Sbjct: 182 MEKNEVSWNAMISGYIECGDLEKAAHFFKAAPFRGV----VAWTAMITGYMKAKKVELAE 237

Query: 206 Q-----------VHGQVLVTGF---------------------------LSNVVISSSIV 227
                       V    +++G+                           LS+ ++  S +
Sbjct: 238 AMFKDMTVKKNLVTWNAMISGYVENSRPEDGLKLFRAMLEEGIRPNSSGLSSALLGCSEL 297

Query: 228 DA------------YAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFN 275
            A            Y KCGEL DA +LF+    +DV+ W  M+SGYA+ G+ E A  LF+
Sbjct: 298 SALCLGRQIHQIVMYCKCGELGDAWKLFEAMKKKDVVAWNAMISGYAQHGNAEKALCLFH 357

Query: 276 EMPE-KNPVSWTTLIA---GYTRNGLGQKALELFTRMM---ILRIRPNQHT 319
           EM + K    W T +A        GL    +  F  M+    +  RP+ +T
Sbjct: 358 EMRDSKTKPDWITFVAVLLACNHAGLVDIGMTYFDSMVRDYRVEPRPDHYT 408



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 66/292 (22%), Positives = 130/292 (44%), Gaps = 39/292 (13%)

Query: 12  RKNLPN-NCLIQSFLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKL 70
           +KNL   N +I  +   +   +  + +     + + GIR  +  L+  L  C+E  +L L
Sbjct: 246 KKNLVTWNAMISGY---VENSRPEDGLKLFRAMLEEGIRPNSSGLSSALLGCSELSALCL 302

Query: 71  GKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYA 130
           G+++                  H I MY KCG   DA K+F+ +  K++ ++N M+SGYA
Sbjct: 303 GRQI------------------HQIVMYCKCGELGDAWKLFEAMKKKDVVAWNAMISGYA 344

Query: 131 NLGMMKHARNLF----DNMAERDVVSWNTMIIGYAKSGAVEEGLKFY-KVLRRFSISCNE 185
             G  + A  LF    D+  + D +++  +++    +G V+ G+ ++  ++R + +    
Sbjct: 345 QHGNAEKALCLFHEMRDSKTKPDWITFVAVLLACNHAGLVDIGMTYFDSMVRDYRVEPRP 404

Query: 186 FSFAGILTI---CVKLEE-LKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARR 241
             +  ++ +     K+EE LKL R +  +     F    ++ +  V    +  E +  + 
Sbjct: 405 DHYTCMVDLLGRAGKVEEALKLIRSMPFRPHAAVF--GTLLGACRVHKNVELAEFAAEKL 462

Query: 242 LFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYT 293
           L  E D R+   +  + + YA     E  +++   M E N V     + GY+
Sbjct: 463 L--ELDPRNAAGYVQLANIYASKNLWEDVARVRKRMKESNVVK----VPGYS 508



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 76/403 (18%), Positives = 143/403 (35%), Gaps = 102/403 (25%)

Query: 242 LFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAG---------- 291
           L   +D   +     +++   + GD++ A  +F+ M  KN VSW +L+ G          
Sbjct: 52  LTKPSDEDQIFPLNKIIATRVRSGDIDGALSVFHGMRAKNTVSWNSLLVGISKDPSRMME 111

Query: 292 ----------------------YTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACAS 329
                                 Y RNG  +KA   F RM       +  ++++ +   A 
Sbjct: 112 AHQLFDEIPEPDTFSYNIMLSCYVRNGNFEKAQSFFNRMPF----KDAASWNTMITGYAR 167

Query: 330 IVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVF-------------- 375
              ++  +     L  +    N +  +++I  Y +CG L      F              
Sbjct: 168 RGEMEKAR----VLFYSMMEKNEVSWNAMISGYIECGDLEKAAHFFKAAPFRGVVAWTAM 223

Query: 376 ------------------DLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKP 417
                             D+T  K+N + WN MIS   ++   E  ++LF  M+   ++P
Sbjct: 224 ITGYMKAKKVELAEAMFKDMT-VKKNLVTWNAMISGYVENSRPEDGLKLFRAMLEEGIRP 282

Query: 418 DKITLAVILNACTH------------------SGLVQEGLTYFESMTHDLGIIPNQEHHA 459
           +   L+  L  C+                    G + +    FE+M     +  N     
Sbjct: 283 NSSGLSSALLGCSELSALCLGRQIHQIVMYCKCGELGDAWKLFEAMKKKDVVAWN----- 337

Query: 460 CLIELLAQAGCSDQ---LMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLI-D 515
            +I   AQ G +++   L +++     + D   + A+   C   G +D+G    D ++ D
Sbjct: 338 AMISGYAQHGNAEKALCLFHEMRDSKTKPDWITFVAVLLACNHAGLVDIGMTYFDSMVRD 397

Query: 516 QNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAI 558
              +    H   + +   LG+   VE+  +LI    F+   A+
Sbjct: 398 YRVEPRPDH--YTCMVDLLGRAGKVEEALKLIRSMPFRPHAAV 438


>gi|12324033|gb|AAG51982.1|AC024260_20 hypothetical protein; 70922-66390 [Arabidopsis thaliana]
          Length = 839

 Score =  305 bits (782), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 162/527 (30%), Positives = 282/527 (53%), Gaps = 37/527 (7%)

Query: 84  KTPTTF----LSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHAR 139
           +TP  F     SN L+S Y + G   +A +VF  + VK + S ++M+ GY  +G +  AR
Sbjct: 169 ETPVKFRDSVASNVLLSGYLRAGKWNEAVRVFQGMAVKEVVSCSSMVHGYCKMGRIVDAR 228

Query: 140 NLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRR-FSISCNEFSFAGILTICVKL 198
           +LFD M ER+V++W  MI GY K+G  E+G   +  +R+   +  N  + A +   C   
Sbjct: 229 SLFDRMTERNVITWTAMIDGYFKAGFFEDGFGLFLRMRQEGDVKVNSNTLAVMFKACRDF 288

Query: 199 EELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCG------------------------ 234
              +   Q+HG V       ++ + +S++  Y+K G                        
Sbjct: 289 VRYREGSQIHGLVSRMPLEFDLFLGNSLMSMYSKLGYMGEAKAVFGVMKNKDSVSWNSLI 348

Query: 235 -------ELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTT 287
                  ++S+A  LF++   +D+++WT M+ G++  G++    +LF  MPEK+ ++WT 
Sbjct: 349 TGLVQRKQISEAYELFEKMPGKDMVSWTDMIKGFSGKGEISKCVELFGMMPEKDNITWTA 408

Query: 288 LIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTN 347
           +I+ +  NG  ++AL  F +M+   + PN +TFSS L A AS+  L  G Q+HG +++ N
Sbjct: 409 MISAFVSNGYYEEALCWFHKMLQKEVCPNSYTFSSVLSATASLADLIEGLQIHGRVVKMN 468

Query: 348 FRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLF 407
             ++  V +SL+ MY KCG  ND  ++F    ++ N + +NTMIS  + +G+ ++A++LF
Sbjct: 469 IVNDLSVQNSLVSMYCKCGNTNDAYKIFSCI-SEPNIVSYNTMISGYSYNGFGKKALKLF 527

Query: 408 HDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQ 467
             +  S  +P+ +T   +L+AC H G V  G  YF+SM     I P  +H+AC+++LL +
Sbjct: 528 SMLESSGKEPNGVTFLALLSACVHVGYVDLGWKYFKSMKSSYNIEPGPDHYACMVDLLGR 587

Query: 468 AGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLL 527
           +G  D   N +  MP +  S +W +L    + H  +D+      +LI+  P S+  + +L
Sbjct: 588 SGLLDDASNLISTMPCKPHSGVWGSLLSASKTHLRVDLAELAAKKLIELEPDSATPYVVL 647

Query: 528 SSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSD 574
           S +YS +GK R  +++  +   ++ KK+   SWI ++ +VH F   D
Sbjct: 648 SQLYSIIGKNRDCDRIMNIKKSKRIKKDPGSSWIILKGEVHNFLAGD 694



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 135/534 (25%), Positives = 245/534 (45%), Gaps = 65/534 (12%)

Query: 77  HLKLTQR-----KTPTT----FLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLS 127
           H  +TQ+     +T TT    F  N  IS + + G+  +A  +F ++  +++ S+  M+S
Sbjct: 30  HEPITQKTRNFLETTTTSTAIFQCNSQISKHARNGNLQEAEAIFRQMSNRSIVSWIAMIS 89

Query: 128 GYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISC---- 183
            YA  G M  A  +FD M  R   S+N MI    K+           + + + + C    
Sbjct: 90  AYAENGKMSKAWQVFDEMPVRVTTSYNAMITAMIKNKC--------DLGKAYELFCDIPE 141

Query: 184 -NEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRL 242
            N  S+A ++T  V+         ++ +  V     + V S+ ++  Y + G+ ++A R+
Sbjct: 142 KNAVSYATMITGFVRAGRFDEAEFLYAETPVK--FRDSVASNVLLSGYLRAGKWNEAVRV 199

Query: 243 FDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKAL 302
           F     ++V++ ++MV GY K+G +  A  LF+ M E+N ++WT +I GY + G  +   
Sbjct: 200 FQGMAVKEVVSCSSMVHGYCKMGRIVDARSLFDRMTERNVITWTAMIDGYFKAGFFEDGF 259

Query: 303 ELFTRM-MILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDM 361
            LF RM     ++ N +T +    AC   V  + G Q+HG + R     +  + +SL+ M
Sbjct: 260 GLFLRMRQEGDVKVNSNTLAVMFKACRDFVRYREGSQIHGLVSRMPLEFDLFLGNSLMSM 319

Query: 362 YSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFH-----------DM 410
           YSK G + + + VF +  NK+ S+ WN++I+ L Q     +A  LF            DM
Sbjct: 320 YSKLGYMGEAKAVFGVMKNKD-SVSWNSLITGLVQRKQISEAYELFEKMPGKDMVSWTDM 378

Query: 411 VRS--------------SVKPDK--ITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPN 454
           ++                + P+K  IT   +++A   +G  +E L +F  M     + PN
Sbjct: 379 IKGFSGKGEISKCVELFGMMPEKDNITWTAMISAFVSNGYYEEALCWFHKMLQK-EVCPN 437

Query: 455 QEHHACLIELLAQAGCSD-----QLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKV 509
               + +  L A A  +D     Q+  ++ KM   +D  + N+L  +    GN +   K+
Sbjct: 438 SYTFSSV--LSATASLADLIEGLQIHGRVVKMNIVNDLSVQNSLVSMYCKCGNTNDAYKI 495

Query: 510 VDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEI 563
              + + N  S  T   + S YS  G G+   K+  ++ E   K+   ++++ +
Sbjct: 496 FSCISEPNIVSYNT---MISGYSYNGFGKKALKLFSML-ESSGKEPNGVTFLAL 545


>gi|115434844|ref|NP_001042180.1| Os01g0176300 [Oryza sativa Japonica Group]
 gi|11034538|dbj|BAB17062.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|113531711|dbj|BAF04094.1| Os01g0176300 [Oryza sativa Japonica Group]
 gi|125569234|gb|EAZ10749.1| hypothetical protein OsJ_00586 [Oryza sativa Japonica Group]
          Length = 665

 Score =  305 bits (782), Expect = 4e-80,   Method: Compositional matrix adjust.
 Identities = 151/440 (34%), Positives = 257/440 (58%), Gaps = 1/440 (0%)

Query: 151 VSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQ 210
           V WN +I G+ +SG  E     +  + R S      ++  +L+ C K ++L L  QVH +
Sbjct: 127 VMWNALISGHNRSGRFELSCCSFVDMVRASAMATAVTYVSVLSACGKGKDLLLGMQVHKR 186

Query: 211 VLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESA 270
           VL +G L +  + +++VD YA+CG++  A  LF+    R + +WT+++SG  + G ++ A
Sbjct: 187 VLESGVLPDQRVENALVDMYAECGDMDAAWVLFEGMQMRSMASWTSVISGLVRSGQVDRA 246

Query: 271 SKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASI 330
             LF+ MPE++ ++WT +I GY + G  + ALE F  M I ++R ++ T  S + ACA +
Sbjct: 247 RDLFDHMPERDTIAWTAMIDGYVQVGRFRDALETFRYMQICKVRADEFTMVSVVTACAQL 306

Query: 331 VSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTM 390
            +L+ G+    ++ R   + +  V ++LIDMYSKCG +     VF    N++    W  +
Sbjct: 307 GALETGEWARIYMGRLGIKMDVFVGNALIDMYSKCGSIERALDVFKDMHNRDK-FTWTAI 365

Query: 391 ISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLG 450
           I  L  +G  E+AI +F+ M+R+   PD++T   +L ACTH+GLV +G  +F SMT    
Sbjct: 366 ILGLAVNGRGEEAIDMFYRMLRALQTPDEVTFVGVLTACTHAGLVDKGREFFLSMTEAYN 425

Query: 451 IIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVV 510
           I P   H+ CLI++L +AG   + ++ ++KMP + +S +W  L   CR++GN ++G    
Sbjct: 426 ISPTVVHYGCLIDVLGRAGKLKEALDTIDKMPMKPNSTIWGTLLASCRVYGNSEIGELAA 485

Query: 511 DQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAF 570
           ++L++ +P +S  + LLS++Y+   + + V ++RQ+I E+  KKE   S IE+   +H F
Sbjct: 486 ERLLELDPDNSTAYILLSNMYAKSNRWKDVRRIRQIIMEKGIKKEPGCSMIEMNGIIHEF 545

Query: 571 SVSDSLHPMRDVLYSVLEQL 590
             +D  HPM   +YS LE +
Sbjct: 546 VAADRSHPMNKEIYSKLENV 565



 Score =  152 bits (385), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 103/384 (26%), Positives = 178/384 (46%), Gaps = 49/384 (12%)

Query: 52  AETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKV- 110
           A T   +L  C + K L LG +VH  + L     P   + N L+ MY +CG D+DA  V 
Sbjct: 161 AVTYVSVLSACGKGKDLLLGMQVHKRV-LESGVLPDQRVENALVDMYAECG-DMDAAWVL 218

Query: 111 FDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGL 170
           F+ + ++++ S+ +++SG    G +  AR+LFD+M ERD ++W  MI GY + G   + L
Sbjct: 219 FEGMQMRSMASWTSVISGLVRSGQVDRARDLFDHMPERDTIAWTAMIDGYVQVGRFRDAL 278

Query: 171 KFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAY 230
           + ++ ++   +  +EF+   ++T C +L  L+        +   G   +V + ++++D Y
Sbjct: 279 ETFRYMQICKVRADEFTMVSVVTACAQLGALETGEWARIYMGRLGIKMDVFVGNALIDMY 338

Query: 231 AKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIA 290
           +KCG +  A  +F +   RD  TWT ++ G A                            
Sbjct: 339 SKCGSIERALDVFKDMHNRDKFTWTAIILGLAV--------------------------- 371

Query: 291 GYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRT---N 347
               NG G++A+++F RM+     P++ TF   L AC     +  G++   FL  T   N
Sbjct: 372 ----NGRGEEAIDMFYRMLRALQTPDEVTFVGVLTACTHAGLVDKGREF--FLSMTEAYN 425

Query: 348 FRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDE----QA 403
                +    LID+  + G L +     D    K NS +W T++++   +G  E     A
Sbjct: 426 ISPTVVHYGCLIDVLGRAGKLKEALDTIDKMPMKPNSTIWGTLLASCRVYGNSEIGELAA 485

Query: 404 IRLFHDMVRSSVKPDKITLAVILN 427
            RL        + PD  T  ++L+
Sbjct: 486 ERLLE------LDPDNSTAYILLS 503



 Score = 75.1 bits (183), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 69/293 (23%), Positives = 124/293 (42%), Gaps = 40/293 (13%)

Query: 282 PVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHG 341
           PV W  LI+G+ R+G  + +   F  M+         T+ S L AC     L  G QVH 
Sbjct: 126 PVMWNALISGHNRSGRFELSCCSFVDMVRASAMATAVTYVSVLSACGKGKDLLLGMQVHK 185

Query: 342 FLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVF-------------------------- 375
            ++ +    +  V ++L+DMY++CG ++    +F                          
Sbjct: 186 RVLESGVLPDQRVENALVDMYAECGDMDAAWVLFEGMQMRSMASWTSVISGLVRSGQVDR 245

Query: 376 --DLTDN--KENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTH 431
             DL D+  + +++ W  MI    Q G    A+  F  M    V+ D+ T+  ++ AC  
Sbjct: 246 ARDLFDHMPERDTIAWTAMIDGYVQVGRFRDALETFRYMQICKVRADEFTMVSVVTACAQ 305

Query: 432 SGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWN 491
            G ++ G  +       LGI  +      LI++ ++ G  ++ ++  + M +  D + W 
Sbjct: 306 LGALETG-EWARIYMGRLGIKMDVFVGNALIDMYSKCGSIERALDVFKDM-HNRDKFTWT 363

Query: 492 ALHGVCRIHGN----IDMGRKVVDQLIDQNPQSSATHGLLSSIYSA--LGKGR 538
           A+     ++G     IDM  +++  L  Q P      G+L++   A  + KGR
Sbjct: 364 AIILGLAVNGRGEEAIDMFYRMLRAL--QTPDEVTFVGVLTACTHAGLVDKGR 414


>gi|449520333|ref|XP_004167188.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g49142-like [Cucumis sativus]
          Length = 678

 Score =  305 bits (782), Expect = 4e-80,   Method: Compositional matrix adjust.
 Identities = 160/509 (31%), Positives = 268/509 (52%), Gaps = 38/509 (7%)

Query: 125 MLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCN 184
           ++  Y+  G    AR +FD   E++VV +N MI  Y  +    E L  ++V+   + + +
Sbjct: 77  LMRAYSAQGETSVARYIFDRSLEKNVVFFNVMIRSYVNNNLYVEALSIFQVMLSCAFNPD 136

Query: 185 EFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFD 244
            ++F  +L  C  L+ L++  QVH  ++  G  +N+ I +++V  Y KCG L +AR++ D
Sbjct: 137 HYTFPCVLKACSGLDNLRVGLQVHDAIVKVGLDTNLFIGNALVAMYGKCGCLREARKVLD 196

Query: 245 ETDARDVLTWTTMVSGYAKLGDMESA---------------------------------- 270
           +   RDV++W +MV+GYA+ G  + A                                  
Sbjct: 197 QMPYRDVVSWNSMVAGYAQSGQFDDALEICKEMDSLNLNHDAGTMASLSPVVCYTSLENV 256

Query: 271 ---SKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCAC 327
                +F  M +KN +SW  +IA Y  N +  +A+ LF +M    ++P+  T +S L AC
Sbjct: 257 QYIHNMFERMTKKNLISWNVMIAIYVNNSMPNEAVSLFLQMEECGMKPDAVTIASLLPAC 316

Query: 328 ASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLW 387
             + +L  G+++H ++ + N + N ++ ++L+DMY+KCGCL + R VFD    ++  + W
Sbjct: 317 GDLSALFLGRRLHKYIEKGNLQPNLLLENALLDMYAKCGCLEEARDVFDKMRLRD-VVSW 375

Query: 388 NTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTH 447
            +M+SA  + G    A+ LF  M+ S   PD I    +L+AC+H+GL+ +G  YF  MT 
Sbjct: 376 TSMMSAYGRSGQGYDAVALFAKMLDSGQNPDSIAFVSVLSACSHTGLLDQGRHYFRMMTE 435

Query: 448 DLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGR 507
             GI+P  EH AC+++L  +AG  ++  + +++MP E +  +W AL   CR+H  +D+G 
Sbjct: 436 QYGIVPRIEHFACMVDLFGRAGEVEEAYSFIKQMPMEPNERVWGALLSACRVHSKMDIGL 495

Query: 508 KVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKV 567
              D L    P+ S  + LLS+IY+  G  + V  VR  + +   KK   IS +E+  +V
Sbjct: 496 VAADLLFQLAPKQSGYYVLLSNIYAKAGMWKDVMNVRYAMKKIGIKKVPGISNVELNGQV 555

Query: 568 HAFSVSDSLHPMRDVLYSVLEQLAGQMGE 596
           H F   D  HP    +Y  L+ L G+M E
Sbjct: 556 HTFLAGDQYHPQAKNIYGELDVLVGKMKE 584



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 99/432 (22%), Positives = 183/432 (42%), Gaps = 81/432 (18%)

Query: 8   RGINRKNLPNNCLIQSFLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKS 67
           R + +  +  N +I+S+   ++     EA+S   ++          T   +L+ C+   +
Sbjct: 96  RSLEKNVVFFNVMIRSY---VNNNLYVEALSIFQVMLSCAFNPDHYTFPCVLKACSGLDN 152

Query: 68  LKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLS 127
           L++G +VH  +      T   F+ N L++MY KC                          
Sbjct: 153 LRVGLQVHDAIVKVGLDT-NLFIGNALVAMYGKC-------------------------- 185

Query: 128 GYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFS 187
                G ++ AR + D M  RDVVSWN+M+ GYA+SG  ++ L+  K +   +++ +  +
Sbjct: 186 -----GCLREARKVLDQMPYRDVVSWNSMVAGYAQSGQFDDALEICKEMDSLNLNHDAGT 240

Query: 188 FAGI-LTIC-VKLEELKLTRQVHGQVLVTGFLS-NVVI---------------------- 222
            A +   +C   LE ++    +  ++     +S NV+I                      
Sbjct: 241 MASLSPVVCYTSLENVQYIHNMFERMTKKNLISWNVMIAIYVNNSMPNEAVSLFLQMEEC 300

Query: 223 -----SSSIVDAYAKCGELSD---ARRLFDETDA----RDVLTWTTMVSGYAKLGDMESA 270
                + +I      CG+LS     RRL    +      ++L    ++  YAK G +E A
Sbjct: 301 GMKPDAVTIASLLPACGDLSALFLGRRLHKYIEKGNLQPNLLLENALLDMYAKCGCLEEA 360

Query: 271 SKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASI 330
             +F++M  ++ VSWT++++ Y R+G G  A+ LF +M+     P+   F S L AC+  
Sbjct: 361 RDVFDKMRLRDVVSWTSMMSAYGRSGQGYDAVALFAKMLDSGQNPDSIAFVSVLSACSHT 420

Query: 331 VSLKHGKQVHGFLIRTNFRSNTIV-----MSSLIDMYSKCGCLNDGRQVFDLTDNKENSM 385
             L  G+  H F + T      IV      + ++D++ + G + +          + N  
Sbjct: 421 GLLDQGR--HYFRMMT--EQYGIVPRIEHFACMVDLFGRAGEVEEAYSFIKQMPMEPNER 476

Query: 386 LWNTMISALTQH 397
           +W  ++SA   H
Sbjct: 477 VWGALLSACRVH 488


>gi|115457318|ref|NP_001052259.1| Os04g0218100 [Oryza sativa Japonica Group]
 gi|113563830|dbj|BAF14173.1| Os04g0218100, partial [Oryza sativa Japonica Group]
          Length = 890

 Score =  305 bits (782), Expect = 4e-80,   Method: Compositional matrix adjust.
 Identities = 183/596 (30%), Positives = 317/596 (53%), Gaps = 45/596 (7%)

Query: 31  GQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLT--QRKTPTT 88
           G L EA    D + QRGI    + +++     A  KS      + L  K+T    + PT 
Sbjct: 204 GSLEEASMIFDEITQRGID---DVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTN 260

Query: 89  FLSN--HLISMYFKCGS--DVDARKVFDKIPVKN-----LFSYNNMLSGYANLGMMKHAR 139
             S+   ++++   CGS   V   K      ++N     +F  N ++  YA  G+M++A 
Sbjct: 261 ERSDIISIVNILPACGSLKAVPQTKEVHGNAIRNGTFPDVFVGNALIDAYAKCGLMENAV 320

Query: 140 NLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSF----AGILTIC 195
            +F+ M  +DVVSWN M+ GY++SG  E   + +K +R+ +I  +  ++    AG     
Sbjct: 321 KVFNMMEFKDVVSWNAMVAGYSQSGNFEAAFELFKNMRKENIPLDVVTWTAVIAGYSQRG 380

Query: 196 VKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRL------------- 242
              E L L RQ+    + +G L N V   S++ A A  G  S    +             
Sbjct: 381 CSHEALNLFRQM----IFSGSLPNCVTIISVLSACASLGAFSQGTEIHAYSLKNCLLTLD 436

Query: 243 --FDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMP--EKNPVSWTTLIAGYTRNGLG 298
             F   D  D++ +  ++  Y+K    ++A  +F+++P  E+N V+WT +I G+ + G  
Sbjct: 437 NDFGGED-EDLMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDS 495

Query: 299 QKALELFTRMM--ILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNT--IV 354
             AL+LF  M+     + PN +T S  L ACA + +++ GKQ+H +++R +   ++   V
Sbjct: 496 NDALKLFVEMISEPYGVAPNAYTISCILMACAHLAAIRIGKQIHAYVLRHHRYESSAYFV 555

Query: 355 MSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSS 414
            + LIDMYSKCG ++  R VFD    K +++ W +M++    HG   +A+ +F  M ++ 
Sbjct: 556 ANCLIDMYSKCGDVDTARHVFDSMSQK-SAISWTSMMTGYGMHGRGSEALDIFDKMRKAG 614

Query: 415 VKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQL 474
             PD IT  V+L AC+H G+V +GL+YF+SM+ D G+ P  EH+AC I+LLA++G  D+ 
Sbjct: 615 FVPDDITFLVVLYACSHCGMVDQGLSYFDSMSADYGLTPRAEHYACAIDLLARSGRLDKA 674

Query: 475 MNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSAL 534
              ++ MP E  + +W AL   CR+H N+++    +++L++ N ++  ++ L+S+IY+  
Sbjct: 675 WRTVKDMPMEPTAVVWVALLSACRVHSNVELAEHALNKLVEMNAENDGSYTLISNIYATA 734

Query: 535 GKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQL 590
           G+ + V ++R L+ +   KK    SW++ +    +F V D  HP+   +Y++LE L
Sbjct: 735 GRWKDVARIRHLMKKSGIKKRPGCSWVQGQKGTASFFVGDRSHPLSPQIYALLESL 790



 Score =  205 bits (521), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 141/518 (27%), Positives = 242/518 (46%), Gaps = 70/518 (13%)

Query: 28  ISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPT 87
           I +G+L  AI+    + + G R    TL  +L+ C E  S + G   H  L         
Sbjct: 131 IKQGRLDSAINVSCRMLRAGTRPDHFTLPHVLKACGELPSYRCGSAFH-GLICCNGFESN 189

Query: 88  TFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAE 147
            F+ N L++MY +CGS  +A  +FD+I  + +                            
Sbjct: 190 VFICNALVAMYSRCGSLEEASMIFDEITQRGI---------------------------- 221

Query: 148 RDVVSWNTMIIGYAKSGAVEEGLKFYK--VLRRFSISCNE----FSFAGILTICVKLEEL 201
            DV+SWN+++  + KS      L  +    L       NE     S   IL  C  L+ +
Sbjct: 222 DDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIVNILPACGSLKAV 281

Query: 202 KLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGY 261
             T++VHG  +  G   +V + ++++DAYAKCG + +A ++F+  + +DV++W  MV+GY
Sbjct: 282 PQTKEVHGNAIRNGTFPDVFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVSWNAMVAGY 341

Query: 262 AKLGDMESASKLFNEMPEKN----PVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQ 317
           ++ G+ E+A +LF  M ++N     V+WT +IAGY++ G   +AL LF +M+     PN 
Sbjct: 342 SQSGNFEAAFELFKNMRKENIPLDVVTWTAVIAGYSQRGCSHEALNLFRQMIFSGSLPNC 401

Query: 318 HTFSSCLCACASIVSLKHGKQVHGFLIRTNFRS----------NTIVMSSLIDMYSKCGC 367
            T  S L ACAS+ +   G ++H + ++    +          + +V ++LIDMYSKC  
Sbjct: 402 VTIISVLSACASLGAFSQGTEIHAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCRS 461

Query: 368 LNDGRQVF-DLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRS--SVKPDKITLAV 424
               R +F D+   + N + W  MI    Q+G    A++LF +M+     V P+  T++ 
Sbjct: 462 FKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEPYGVAPNAYTISC 521

Query: 425 ILNACTHSGLVQEGLTY---------FESMTHDLGIIPNQEHHACLIELLAQAGCSDQLM 475
           IL AC H   ++ G            +ES  +    + N     CLI++ ++ G  D   
Sbjct: 522 ILMACAHLAAIRIGKQIHAYVLRHHRYESSAY---FVAN-----CLIDMYSKCGDVDTAR 573

Query: 476 NQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQL 513
           +  + M  +  +  W ++     +HG       + D++
Sbjct: 574 HVFDSMS-QKSAISWTSMMTGYGMHGRGSEALDIFDKM 610



 Score =  135 bits (340), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 88/339 (25%), Positives = 157/339 (46%), Gaps = 42/339 (12%)

Query: 125 MLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCN 184
           +++ Y   G   +A  + + +     V WN +I  + K G ++  +     + R     +
Sbjct: 95  VVASYLACGATDYALLVLERVTPSPAVWWNLLIREHIKQGRLDSAINVSCRMLRAGTRPD 154

Query: 185 EFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFD 244
            F+   +L  C +L   +     HG +   GF SNV I +++V  Y++CG L +A  +FD
Sbjct: 155 HFTLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSLEEASMIFD 214

Query: 245 ETDAR---DVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKA 301
           E   R   DV++W ++VS + K  +                 +WT              A
Sbjct: 215 EITQRGIDDVISWNSIVSAHVKSSN-----------------AWT--------------A 243

Query: 302 LELFTRM-MILRIRPNQH-----TFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVM 355
           L+LF++M +I+  +P        +  + L AC S+ ++   K+VHG  IR     +  V 
Sbjct: 244 LDLFSKMTLIVHEKPTNERSDIISIVNILPACGSLKAVPQTKEVHGNAIRNGTFPDVFVG 303

Query: 356 SSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSV 415
           ++LID Y+KCG + +  +VF++ + K+  + WN M++  +Q G  E A  LF +M + ++
Sbjct: 304 NALIDAYAKCGLMENAVKVFNMMEFKD-VVSWNAMVAGYSQSGNFEAAFELFKNMRKENI 362

Query: 416 KPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPN 454
             D +T   ++   +  G   E L  F  M    G +PN
Sbjct: 363 PLDVVTWTAVIAGYSQRGCSHEALNLFRQMIFS-GSLPN 400



 Score = 85.5 bits (210), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 69/290 (23%), Positives = 122/290 (42%), Gaps = 11/290 (3%)

Query: 255 TTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIR 314
           T +V+ Y   G  + A  +   +     V W  LI  + + G    A+ +  RM+    R
Sbjct: 93  TGVVASYLACGATDYALLVLERVTPSPAVWWNLLIREHIKQGRLDSAINVSCRMLRAGTR 152

Query: 315 PNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQV 374
           P+  T    L AC  + S + G   HG +    F SN  + ++L+ MYS+CG L +   +
Sbjct: 153 PDHFTLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSLEEASMI 212

Query: 375 FDLTDNK--ENSMLWNTMISALTQHGYDEQAIRLFHDMV------RSSVKPDKITLAVIL 426
           FD    +  ++ + WN+++SA  +      A+ LF  M        ++ + D I++  IL
Sbjct: 213 FDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIVNIL 272

Query: 427 NACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHD 486
            AC     V +      +   + G  P+      LI+  A+ G  +  +     M ++ D
Sbjct: 273 PACGSLKAVPQTKEVHGNAIRN-GTFPDVFVGNALIDAYAKCGLMENAVKVFNMMEFK-D 330

Query: 487 SYLWNALHGVCRIHGNIDMGRKVVDQLIDQN-PQSSATHGLLSSIYSALG 535
              WNA+       GN +   ++   +  +N P    T   + + YS  G
Sbjct: 331 VVSWNAMVAGYSQSGNFEAAFELFKNMRKENIPLDVVTWTAVIAGYSQRG 380


>gi|359476090|ref|XP_003631788.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At2g20540-like [Vitis vinifera]
          Length = 515

 Score =  305 bits (782), Expect = 4e-80,   Method: Compositional matrix adjust.
 Identities = 161/463 (34%), Positives = 261/463 (56%), Gaps = 6/463 (1%)

Query: 133 GMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCN-----EFS 187
           G  ++A  LF  +A+ +   +N MI  Y  +      +  +K +   S   N     +F+
Sbjct: 34  GETEYANLLFKRVADPNAFLYNAMIRAYKHNKVYILAITVHKQMLGHSHGENPXFPDKFT 93

Query: 188 FAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETD 247
           F  ++  C  L    L +QVHG     G  SN VI +S+V+ Y KC  L DA R+F+E  
Sbjct: 94  FPFVVKXCAGLMCYNLGKQVHGHAFKFGPKSNTVIENSLVEMYVKCDSLDDAHRVFEEMT 153

Query: 248 ARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTR 307
            RD ++W T++SG+ +LG M  A  +F E+ +K   SWT +++GY R G    ALE F R
Sbjct: 154 ERDAVSWNTLISGHVRLGQMRRARAIFEELQDKTIFSWTAIVSGYARIGCHAVALEFFRR 213

Query: 308 MMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGC 367
           M ++ I  ++ +  S L ACA + +L+ GK +H +  +  F  +  V ++LI++Y+K G 
Sbjct: 214 MQMVDIELDEISLVSVLPACAQLGALELGKWIHIYADKAGFLRDICVCNALIEVYAKRGS 273

Query: 368 LNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILN 427
           +++GR++F    N+ + + W+TMI  L  HG   +AI LF +M ++ V+P+ IT   +L+
Sbjct: 274 MDEGRRLFHKM-NERDVISWSTMIVGLANHGRAREAIELFQEMQKAKVEPNIITFVGLLS 332

Query: 428 ACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDS 487
           AC H+GL+ EGL YFESM  D  I P  EH+ CL+ LL  +G  DQ +  ++KMP + DS
Sbjct: 333 ACAHAGLLNEGLGYFESMERDDNIEPGVEHYGCLVNLLGLSGRLDQALELIKKMPMKPDS 392

Query: 488 YLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLI 547
            +W  L   CR HGN+++    ++ L++  P  +  +  LS++Y+ LGK   V ++R+L+
Sbjct: 393 DIWGLLSSSCRSHGNLEIVAIAMEHLLELEPDDTGNYITLSNLYADLGKWDGVSRMRKLM 452

Query: 548 NERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQL 590
           + +   K    S IE++N V  ++  D   P    +Y VL+ L
Sbjct: 453 SSKYMNKTPGCSSIEVDNMVQEYASGDDSKPFSKAIYRVLKLL 495



 Score =  165 bits (418), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 99/346 (28%), Positives = 167/346 (48%), Gaps = 33/346 (9%)

Query: 54  TLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDK 113
           T  F+++ CA      LGK+VH H      K+  T + N L+ MY KC S  DA +VF++
Sbjct: 93  TFPFVVKXCAGLMCYNLGKQVHGHAFKFGPKS-NTVIENSLVEMYVKCDSLDDAHRVFEE 151

Query: 114 IPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFY 173
           +  ++  S+N ++SG+  LG M+ AR +F+ + ++ + SW  ++ GYA+ G     L+F+
Sbjct: 152 MTERDAVSWNTLISGHVRLGQMRRARAIFEELQDKTIFSWTAIVSGYARIGCHAVALEFF 211

Query: 174 KVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKC 233
           + ++   I  +E S   +L  C +L  L+L + +H      GFL ++ + +++++ YAK 
Sbjct: 212 RRMQMVDIELDEISLVSVLPACAQLGALELGKWIHIYADKAGFLRDICVCNALIEVYAKR 271

Query: 234 GELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYT 293
           G + + RRLF + + RDV++W+TM+ G A  G    A +LF EM                
Sbjct: 272 GSMDEGRRLFHKMNERDVISWSTMIVGLANHGRAREAIELFQEM---------------- 315

Query: 294 RNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIR-TNFRSNT 352
                QKA          ++ PN  TF   L ACA    L  G      + R  N     
Sbjct: 316 -----QKA----------KVEPNIITFVGLLSACAHAGLLNEGLGYFESMERDDNIEPGV 360

Query: 353 IVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHG 398
                L+++    G L+   ++      K +S +W  + S+   HG
Sbjct: 361 EHYGCLVNLLGLSGRLDQALELIKKMPMKPDSDIWGLLSSSCRSHG 406



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 40/140 (28%), Positives = 73/140 (52%), Gaps = 15/140 (10%)

Query: 48  IRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLS-----NHLISMYFKCG 102
           I L   +L  +L  CA+  +L+LGK +H++           FL      N LI +Y K G
Sbjct: 219 IELDEISLVSVLPACAQLGALELGKWIHIY------ADKAGFLRDICVCNALIEVYAKRG 272

Query: 103 SDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNM----AERDVVSWNTMII 158
           S  + R++F K+  +++ S++ M+ G AN G  + A  LF  M     E +++++  ++ 
Sbjct: 273 SMDEGRRLFHKMNERDVISWSTMIVGLANHGRAREAIELFQEMQKAKVEPNIITFVGLLS 332

Query: 159 GYAKSGAVEEGLKFYKVLRR 178
             A +G + EGL +++ + R
Sbjct: 333 ACAHAGLLNEGLGYFESMER 352


>gi|8671867|gb|AAF78430.1|AC018748_9 Contains similarity to glycerine-rich protein from Nicotiana glauca
           gb|AF151215 and contains multiple PPR PF|01535 repeats
           [Arabidopsis thaliana]
          Length = 816

 Score =  305 bits (782), Expect = 4e-80,   Method: Compositional matrix adjust.
 Identities = 162/527 (30%), Positives = 282/527 (53%), Gaps = 37/527 (7%)

Query: 84  KTPTTF----LSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHAR 139
           +TP  F     SN L+S Y + G   +A +VF  + VK + S ++M+ GY  +G +  AR
Sbjct: 169 ETPVKFRDSVASNVLLSGYLRAGKWNEAVRVFQGMAVKEVVSCSSMVHGYCKMGRIVDAR 228

Query: 140 NLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRR-FSISCNEFSFAGILTICVKL 198
           +LFD M ER+V++W  MI GY K+G  E+G   +  +R+   +  N  + A +   C   
Sbjct: 229 SLFDRMTERNVITWTAMIDGYFKAGFFEDGFGLFLRMRQEGDVKVNSNTLAVMFKACRDF 288

Query: 199 EELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCG------------------------ 234
              +   Q+HG V       ++ + +S++  Y+K G                        
Sbjct: 289 VRYREGSQIHGLVSRMPLEFDLFLGNSLMSMYSKLGYMGEAKAVFGVMKNKDSVSWNSLI 348

Query: 235 -------ELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTT 287
                  ++S+A  LF++   +D+++WT M+ G++  G++    +LF  MPEK+ ++WT 
Sbjct: 349 TGLVQRKQISEAYELFEKMPGKDMVSWTDMIKGFSGKGEISKCVELFGMMPEKDNITWTA 408

Query: 288 LIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTN 347
           +I+ +  NG  ++AL  F +M+   + PN +TFSS L A AS+  L  G Q+HG +++ N
Sbjct: 409 MISAFVSNGYYEEALCWFHKMLQKEVCPNSYTFSSVLSATASLADLIEGLQIHGRVVKMN 468

Query: 348 FRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLF 407
             ++  V +SL+ MY KCG  ND  ++F    ++ N + +NTMIS  + +G+ ++A++LF
Sbjct: 469 IVNDLSVQNSLVSMYCKCGNTNDAYKIFSCI-SEPNIVSYNTMISGYSYNGFGKKALKLF 527

Query: 408 HDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQ 467
             +  S  +P+ +T   +L+AC H G V  G  YF+SM     I P  +H+AC+++LL +
Sbjct: 528 SMLESSGKEPNGVTFLALLSACVHVGYVDLGWKYFKSMKSSYNIEPGPDHYACMVDLLGR 587

Query: 468 AGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLL 527
           +G  D   N +  MP +  S +W +L    + H  +D+      +LI+  P S+  + +L
Sbjct: 588 SGLLDDASNLISTMPCKPHSGVWGSLLSASKTHLRVDLAELAAKKLIELEPDSATPYVVL 647

Query: 528 SSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSD 574
           S +YS +GK R  +++  +   ++ KK+   SWI ++ +VH F   D
Sbjct: 648 SQLYSIIGKNRDCDRIMNIKKSKRIKKDPGSSWIILKGEVHNFLAGD 694



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 135/534 (25%), Positives = 245/534 (45%), Gaps = 65/534 (12%)

Query: 77  HLKLTQR-----KTPTT----FLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLS 127
           H  +TQ+     +T TT    F  N  IS + + G+  +A  +F ++  +++ S+  M+S
Sbjct: 30  HEPITQKTRNFLETTTTSTAIFQCNSQISKHARNGNLQEAEAIFRQMSNRSIVSWIAMIS 89

Query: 128 GYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISC---- 183
            YA  G M  A  +FD M  R   S+N MI    K+           + + + + C    
Sbjct: 90  AYAENGKMSKAWQVFDEMPVRVTTSYNAMITAMIKNKC--------DLGKAYELFCDIPE 141

Query: 184 -NEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRL 242
            N  S+A ++T  V+         ++ +  V     + V S+ ++  Y + G+ ++A R+
Sbjct: 142 KNAVSYATMITGFVRAGRFDEAEFLYAETPVK--FRDSVASNVLLSGYLRAGKWNEAVRV 199

Query: 243 FDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKAL 302
           F     ++V++ ++MV GY K+G +  A  LF+ M E+N ++WT +I GY + G  +   
Sbjct: 200 FQGMAVKEVVSCSSMVHGYCKMGRIVDARSLFDRMTERNVITWTAMIDGYFKAGFFEDGF 259

Query: 303 ELFTRM-MILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDM 361
            LF RM     ++ N +T +    AC   V  + G Q+HG + R     +  + +SL+ M
Sbjct: 260 GLFLRMRQEGDVKVNSNTLAVMFKACRDFVRYREGSQIHGLVSRMPLEFDLFLGNSLMSM 319

Query: 362 YSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFH-----------DM 410
           YSK G + + + VF +  NK+ S+ WN++I+ L Q     +A  LF            DM
Sbjct: 320 YSKLGYMGEAKAVFGVMKNKD-SVSWNSLITGLVQRKQISEAYELFEKMPGKDMVSWTDM 378

Query: 411 VRS--------------SVKPDK--ITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPN 454
           ++                + P+K  IT   +++A   +G  +E L +F  M     + PN
Sbjct: 379 IKGFSGKGEISKCVELFGMMPEKDNITWTAMISAFVSNGYYEEALCWFHKMLQK-EVCPN 437

Query: 455 QEHHACLIELLAQAGCSD-----QLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKV 509
               + +  L A A  +D     Q+  ++ KM   +D  + N+L  +    GN +   K+
Sbjct: 438 SYTFSSV--LSATASLADLIEGLQIHGRVVKMNIVNDLSVQNSLVSMYCKCGNTNDAYKI 495

Query: 510 VDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEI 563
              + + N  S  T   + S YS  G G+   K+  ++ E   K+   ++++ +
Sbjct: 496 FSCISEPNIVSYNT---MISGYSYNGFGKKALKLFSML-ESSGKEPNGVTFLAL 545


>gi|449447637|ref|XP_004141574.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g15300-like [Cucumis sativus]
          Length = 542

 Score =  305 bits (781), Expect = 4e-80,   Method: Compositional matrix adjust.
 Identities = 158/465 (33%), Positives = 269/465 (57%), Gaps = 33/465 (7%)

Query: 133 GMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGIL 192
           G M +A  LF  +++ D+  WNTMI G A++      +  Y  +    +  ++F+F+ +L
Sbjct: 61  GTMDYAHQLFAQISQPDIFMWNTMIRGSAQTLKPATAVSLYTQMENRGVRPDKFTFSFVL 120

Query: 193 TICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDAR------------ 240
             C KL  +KL   +HG+VL +GF SN  + ++++  +A CG+L+ AR            
Sbjct: 121 KACTKLSWVKLGFGIHGKVLKSGFQSNTFVRNTLIYFHANCGDLATARALFDASAKREVV 180

Query: 241 -------------------RLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKN 281
                              +LFDE   +D+++W  M++ YAK G+ME A KLF+E+P+K+
Sbjct: 181 PWSALTAGYARRGKLDVARQLFDEMPMKDLVSWNVMITAYAKHGEMEKARKLFDEVPKKD 240

Query: 282 PVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHG 341
            V+W  +IAGY  + L ++ALE+F  M  L  RP+  T  S L A A +  L+ GK++H 
Sbjct: 241 VVTWNAMIAGYVLSRLNKEALEMFDAMRDLGQRPDDVTMLSILSASADLGDLEIGKKIHR 300

Query: 342 FLIRTNFRSNTIVMS-SLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYD 400
            +        ++++S +LIDMY+KCG + +  +VF     K+ S  WN++I  L  HG+ 
Sbjct: 301 SIFDMCCGDLSVLLSNALIDMYAKCGSIGNALEVFQGMRKKDTSS-WNSIIGGLALHGHA 359

Query: 401 EQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHAC 460
           E++I LF +M+R  +KP++IT   +L AC+H+G V+EG  YF  M +   I PN +H+ C
Sbjct: 360 EESINLFQEMLRLKMKPNEITFVAVLVACSHAGKVREGRMYFNLMKNVFKIEPNIKHYGC 419

Query: 461 LIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQS 520
           ++++L +AG   +  + ++ M  E ++ +W  L G CR+HG++++GR+  +QL+      
Sbjct: 420 MVDILGRAGLLIEAFDFIDTMEIEPNAIIWRTLLGACRVHGDVELGRRANEQLLKMRKDE 479

Query: 521 SATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIEN 565
           S  + LLS+IY++ G+   V+KVR+L+++   KK+   S I+ +N
Sbjct: 480 SGDYVLLSNIYASQGEWDGVQKVRKLMDDGGVKKKVGHSLIDSDN 524



 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 115/460 (25%), Positives = 210/460 (45%), Gaps = 73/460 (15%)

Query: 34  SEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNH 93
           + A+S    +  RG+R    T +F+L+ C +   +KLG  +H  + L       TF+ N 
Sbjct: 95  ATAVSLYTQMENRGVRPDKFTFSFVLKACTKLSWVKLGFGIHGKV-LKSGFQSNTFVRNT 153

Query: 94  LISMYFKCGS--------------------------------DVDARKVFDKIPVKNLFS 121
           LI  +  CG                                 DV AR++FD++P+K+L S
Sbjct: 154 LIYFHANCGDLATARALFDASAKREVVPWSALTAGYARRGKLDV-ARQLFDEMPMKDLVS 212

Query: 122 YNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSI 181
           +N M++ YA  G M+ AR LFD + ++DVV+WN MI GY  S   +E L+ +  +R    
Sbjct: 213 WNVMITAYAKHGEMEKARKLFDEVPKKDVVTWNAMIAGYVLSRLNKEALEMFDAMRDLGQ 272

Query: 182 SCNEFSFAGILTICVKLEELKLTRQVHGQV--LVTGFLSNVVISSSIVDAYAKCGELSDA 239
             ++ +   IL+    L +L++ +++H  +  +  G LS V++S++++D YAKCG + +A
Sbjct: 273 RPDDVTMLSILSASADLGDLEIGKKIHRSIFDMCCGDLS-VLLSNALIDMYAKCGSIGNA 331

Query: 240 RRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQ 299
             +F     +D  +W +++ G A  G  E +  LF E                       
Sbjct: 332 LEVFQGMRKKDTSSWNSIIGGLALHGHAEESINLFQE----------------------- 368

Query: 300 KALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFR--SNTIVMSS 357
                   M+ L+++PN+ TF + L AC+    ++ G+     L++  F+   N      
Sbjct: 369 --------MLRLKMKPNEITFVAVLVACSHAGKVREGRMYFN-LMKNVFKIEPNIKHYGC 419

Query: 358 LIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKP 417
           ++D+  + G L +     D  + + N+++W T++ A   HG  E   R    +++  ++ 
Sbjct: 420 MVDILGRAGLLIEAFDFIDTMEIEPNAIIWRTLLGACRVHGDVELGRRANEQLLK--MRK 477

Query: 418 DKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEH 457
           D+    V+L+    S    +G+     +  D G+     H
Sbjct: 478 DESGDYVLLSNIYASQGEWDGVQKVRKLMDDGGVKKKVGH 517


>gi|224079057|ref|XP_002305733.1| predicted protein [Populus trichocarpa]
 gi|222848697|gb|EEE86244.1| predicted protein [Populus trichocarpa]
          Length = 571

 Score =  305 bits (781), Expect = 4e-80,   Method: Compositional matrix adjust.
 Identities = 173/541 (31%), Positives = 279/541 (51%), Gaps = 65/541 (12%)

Query: 58  ILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVK 117
           ILQ CA    + LG+ VH                          GS V A      +  K
Sbjct: 4   ILQACANCGDVSLGRAVH--------------------------GSGVKA-----CVHWK 32

Query: 118 NLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLR 177
             F  N +L  YA  G++  A  +FD M+ R VV+W ++I  YA+ G  +E ++ +  + 
Sbjct: 33  TTFC-NTLLDMYAKCGVLDGAILVFDLMSVRTVVTWTSLIAAYAREGLSDEAIRLFHEMD 91

Query: 178 RFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELS 237
           R  +S + F+   +L  C     L+  + VH  +      SN+ + ++++D YAKC    
Sbjct: 92  REGVSPDIFTITTVLHACACNGSLENGKDVHNYIRENDMQSNIFVCNALMDMYAKC---- 147

Query: 238 DARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGL 297
                                      G ME A+ +F EMP K+ +SW T+I GY++N L
Sbjct: 148 ---------------------------GSMEDANSVFLEMPVKDIISWNTMIGGYSKNSL 180

Query: 298 GQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSS 357
             +AL LF  M +L ++P+  T +  L ACAS+ SL  GK+VHG ++R  F S+  V ++
Sbjct: 181 PNEALSLFGDM-VLEMKPDGTTLACILPACASLASLDRGKEVHGHILRNGFFSDQQVANA 239

Query: 358 LIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKP 417
           L+DMY KCG     R +FD+   K+  + W  MI+    HG+   AI  F++M ++ ++P
Sbjct: 240 LVDMYVKCGVPVLARLLFDMIPTKD-LITWTVMIAGYGMHGFGNNAITTFNEMRQAGIEP 298

Query: 418 DKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQ 477
           D+++   IL AC+HSGL+ EG  +F  M  +  + P  EH+AC+++LLA++G        
Sbjct: 299 DEVSFISILYACSHSGLLDEGWRFFNVMQDECNVKPKLEHYACIVDLLARSGKLAMAYKF 358

Query: 478 LEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKG 537
           ++ MP E D+ +W AL   CRIH ++ +  KV + + +  P+++  + LL++ Y+   K 
Sbjct: 359 IKSMPIEPDATIWGALLSGCRIHHDVKLAEKVAEHVFELEPENTGYYVLLANTYAEAEKW 418

Query: 538 RLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQMGED 597
             V+K+RQ I  R  KK    SWIE+++KVH F   +S HP    +  +L++L  +M E+
Sbjct: 419 EEVKKLRQKIGRRGLKKNPGCSWIEVKSKVHIFLAGNSSHPQAKKIEVLLKRLRSKMKEE 478

Query: 598 A 598
            
Sbjct: 479 G 479



 Score =  125 bits (313), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 84/296 (28%), Positives = 140/296 (47%), Gaps = 41/296 (13%)

Query: 21  IQSFLSLIS----KGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHL 76
           + ++ SLI+    +G   EAI     + + G+     T+  +L  CA + SL+ GK VH 
Sbjct: 64  VVTWTSLIAAYAREGLSDEAIRLFHEMDREGVSPDIFTITTVLHACACNGSLENGKDVHN 123

Query: 77  HLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMK 136
           +++    ++                                N+F  N ++  YA  G M+
Sbjct: 124 YIRENDMQS--------------------------------NIFVCNALMDMYAKCGSME 151

Query: 137 HARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICV 196
            A ++F  M  +D++SWNTMI GY+K+    E L  +  +    +  +  + A IL  C 
Sbjct: 152 DANSVFLEMPVKDIISWNTMIGGYSKNSLPNEALSLFGDM-VLEMKPDGTTLACILPACA 210

Query: 197 KLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTT 256
            L  L   ++VHG +L  GF S+  +++++VD Y KCG    AR LFD    +D++TWT 
Sbjct: 211 SLASLDRGKEVHGHILRNGFFSDQQVANALVDMYVKCGVPVLARLLFDMIPTKDLITWTV 270

Query: 257 MVSGYAKLGDMESASKLFNEMP----EKNPVSWTTLIAGYTRNGLGQKALELFTRM 308
           M++GY   G   +A   FNEM     E + VS+ +++   + +GL  +    F  M
Sbjct: 271 MIAGYGMHGFGNNAITTFNEMRQAGIEPDEVSFISILYACSHSGLLDEGWRFFNVM 326



 Score = 85.9 bits (211), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 43/117 (36%), Positives = 68/117 (58%), Gaps = 1/117 (0%)

Query: 322 SCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNK 381
           S L ACA+   +  G+ VHG  ++      T   ++L+DMY+KCG L+    VFDL   +
Sbjct: 3   SILQACANCGDVSLGRAVHGSGVKACVHWKTTFCNTLLDMYAKCGVLDGAILVFDLMSVR 62

Query: 382 ENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEG 438
              + W ++I+A  + G  ++AIRLFH+M R  V PD  T+  +L+AC  +G ++ G
Sbjct: 63  -TVVTWTSLIAAYAREGLSDEAIRLFHEMDREGVSPDIFTITTVLHACACNGSLENG 118



 Score = 81.6 bits (200), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 69/234 (29%), Positives = 104/234 (44%), Gaps = 40/234 (17%)

Query: 54  TLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDK 113
           TLA IL  CA   SL  GK VH H+ L         ++N L+ MY KCG  V AR +FD 
Sbjct: 201 TLACILPACASLASLDRGKEVHGHI-LRNGFFSDQQVANALVDMYVKCGVPVLARLLFDM 259

Query: 114 IPVKNLFSYNNMLSGYANLGMMKHARNLFDNM----AERDVVSWNTMIIGYAKSGAVEEG 169
           IP K+L ++  M++GY   G   +A   F+ M     E D VS+ +++   + SG ++EG
Sbjct: 260 IPTKDLITWTVMIAGYGMHGFGNNAITTFNEMRQAGIEPDEVSFISILYACSHSGLLDEG 319

Query: 170 LKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDA 229
            +F+ V++     CN         +  KLE                        + IVD 
Sbjct: 320 WRFFNVMQD---ECN---------VKPKLEHY----------------------ACIVDL 345

Query: 230 YAKCGELSDARRLFDETDAR-DVLTWTTMVSGYAKLGDMESASKLFNEMPEKNP 282
            A+ G+L+ A +         D   W  ++SG     D++ A K+   + E  P
Sbjct: 346 LARSGKLAMAYKFIKSMPIEPDATIWGALLSGCRIHHDVKLAEKVAEHVFELEP 399


>gi|334183275|ref|NP_175765.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806499|sp|Q9C8L6.2|PPR80_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g53600, mitochondrial; Flags: Precursor
 gi|332194847|gb|AEE32968.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 717

 Score =  305 bits (781), Expect = 4e-80,   Method: Compositional matrix adjust.
 Identities = 162/527 (30%), Positives = 282/527 (53%), Gaps = 37/527 (7%)

Query: 84  KTPTTF----LSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHAR 139
           +TP  F     SN L+S Y + G   +A +VF  + VK + S ++M+ GY  +G +  AR
Sbjct: 169 ETPVKFRDSVASNVLLSGYLRAGKWNEAVRVFQGMAVKEVVSCSSMVHGYCKMGRIVDAR 228

Query: 140 NLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRR-FSISCNEFSFAGILTICVKL 198
           +LFD M ER+V++W  MI GY K+G  E+G   +  +R+   +  N  + A +   C   
Sbjct: 229 SLFDRMTERNVITWTAMIDGYFKAGFFEDGFGLFLRMRQEGDVKVNSNTLAVMFKACRDF 288

Query: 199 EELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCG------------------------ 234
              +   Q+HG V       ++ + +S++  Y+K G                        
Sbjct: 289 VRYREGSQIHGLVSRMPLEFDLFLGNSLMSMYSKLGYMGEAKAVFGVMKNKDSVSWNSLI 348

Query: 235 -------ELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTT 287
                  ++S+A  LF++   +D+++WT M+ G++  G++    +LF  MPEK+ ++WT 
Sbjct: 349 TGLVQRKQISEAYELFEKMPGKDMVSWTDMIKGFSGKGEISKCVELFGMMPEKDNITWTA 408

Query: 288 LIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTN 347
           +I+ +  NG  ++AL  F +M+   + PN +TFSS L A AS+  L  G Q+HG +++ N
Sbjct: 409 MISAFVSNGYYEEALCWFHKMLQKEVCPNSYTFSSVLSATASLADLIEGLQIHGRVVKMN 468

Query: 348 FRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLF 407
             ++  V +SL+ MY KCG  ND  ++F    ++ N + +NTMIS  + +G+ ++A++LF
Sbjct: 469 IVNDLSVQNSLVSMYCKCGNTNDAYKIFSCI-SEPNIVSYNTMISGYSYNGFGKKALKLF 527

Query: 408 HDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQ 467
             +  S  +P+ +T   +L+AC H G V  G  YF+SM     I P  +H+AC+++LL +
Sbjct: 528 SMLESSGKEPNGVTFLALLSACVHVGYVDLGWKYFKSMKSSYNIEPGPDHYACMVDLLGR 587

Query: 468 AGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLL 527
           +G  D   N +  MP +  S +W +L    + H  +D+      +LI+  P S+  + +L
Sbjct: 588 SGLLDDASNLISTMPCKPHSGVWGSLLSASKTHLRVDLAELAAKKLIELEPDSATPYVVL 647

Query: 528 SSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSD 574
           S +YS +GK R  +++  +   ++ KK+   SWI ++ +VH F   D
Sbjct: 648 SQLYSIIGKNRDCDRIMNIKKSKRIKKDPGSSWIILKGEVHNFLAGD 694



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 135/534 (25%), Positives = 245/534 (45%), Gaps = 65/534 (12%)

Query: 77  HLKLTQR-----KTPTT----FLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLS 127
           H  +TQ+     +T TT    F  N  IS + + G+  +A  +F ++  +++ S+  M+S
Sbjct: 30  HEPITQKTRNFLETTTTSTAIFQCNSQISKHARNGNLQEAEAIFRQMSNRSIVSWIAMIS 89

Query: 128 GYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISC---- 183
            YA  G M  A  +FD M  R   S+N MI    K+           + + + + C    
Sbjct: 90  AYAENGKMSKAWQVFDEMPVRVTTSYNAMITAMIKNKC--------DLGKAYELFCDIPE 141

Query: 184 -NEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRL 242
            N  S+A ++T  V+         ++ +  V     + V S+ ++  Y + G+ ++A R+
Sbjct: 142 KNAVSYATMITGFVRAGRFDEAEFLYAETPVK--FRDSVASNVLLSGYLRAGKWNEAVRV 199

Query: 243 FDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKAL 302
           F     ++V++ ++MV GY K+G +  A  LF+ M E+N ++WT +I GY + G  +   
Sbjct: 200 FQGMAVKEVVSCSSMVHGYCKMGRIVDARSLFDRMTERNVITWTAMIDGYFKAGFFEDGF 259

Query: 303 ELFTRM-MILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDM 361
            LF RM     ++ N +T +    AC   V  + G Q+HG + R     +  + +SL+ M
Sbjct: 260 GLFLRMRQEGDVKVNSNTLAVMFKACRDFVRYREGSQIHGLVSRMPLEFDLFLGNSLMSM 319

Query: 362 YSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFH-----------DM 410
           YSK G + + + VF +  NK+ S+ WN++I+ L Q     +A  LF            DM
Sbjct: 320 YSKLGYMGEAKAVFGVMKNKD-SVSWNSLITGLVQRKQISEAYELFEKMPGKDMVSWTDM 378

Query: 411 VRS--------------SVKPDK--ITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPN 454
           ++                + P+K  IT   +++A   +G  +E L +F  M     + PN
Sbjct: 379 IKGFSGKGEISKCVELFGMMPEKDNITWTAMISAFVSNGYYEEALCWFHKMLQK-EVCPN 437

Query: 455 QEHHACLIELLAQAGCSD-----QLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKV 509
               + +  L A A  +D     Q+  ++ KM   +D  + N+L  +    GN +   K+
Sbjct: 438 SYTFSSV--LSATASLADLIEGLQIHGRVVKMNIVNDLSVQNSLVSMYCKCGNTNDAYKI 495

Query: 510 VDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEI 563
              + + N  S  T   + S YS  G G+   K+  ++ E   K+   ++++ +
Sbjct: 496 FSCISEPNIVSYNT---MISGYSYNGFGKKALKLFSML-ESSGKEPNGVTFLAL 545


>gi|449460189|ref|XP_004147828.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g14470-like [Cucumis sativus]
          Length = 759

 Score =  305 bits (781), Expect = 5e-80,   Method: Compositional matrix adjust.
 Identities = 159/505 (31%), Positives = 287/505 (56%), Gaps = 8/505 (1%)

Query: 92  NHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVV 151
           N +IS  +K G++ +A  +F+ +P +N+ ++ +M++GYA +G ++ AR  FD M ER VV
Sbjct: 165 NSMISGCWKSGNETEAVVLFNMMPARNIITWTSMVTGYAKMGDLESARRYFDEMPERSVV 224

Query: 152 SWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQV 211
           SWN M   YA+    +E L  +  +    I+ ++ ++   ++ C  + +  L   +   +
Sbjct: 225 SWNAMQSAYAQKECPKEALNLFHQMLEEGITPDDTTWVVTISSCSSIGDPTLADSILRMI 284

Query: 212 LVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDA-RDVLTWTTMVSGYAKLGDMESA 270
                + N  + ++++D +AK G L  AR +FDE  + R+ +TW  M+S Y ++G +  A
Sbjct: 285 DQKHIVLNSFVKTALLDMHAKFGNLEIARNIFDELGSQRNAVTWNIMISAYTRVGKLSLA 344

Query: 271 SKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMM-ILRIRPNQHTFSSCLCACAS 329
            +LF+ MP+++ VSW ++IAGY +NG    ++ELF  M+  + I+P++ T +S L AC  
Sbjct: 345 RELFDNMPKRDVVSWNSMIAGYAQNGESAMSIELFKEMISCMDIQPDEVTIASVLSACGH 404

Query: 330 IVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNT 389
           I +LK    V   +   N +      +SLI MYSKCG + D  ++F  T    + + +NT
Sbjct: 405 IGALKLSYWVLDIVREKNIKLGISGFNSLIFMYSKCGSVADAHRIFQ-TMGTRDVVSFNT 463

Query: 390 MISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDL 449
           +IS    +G+ ++AI+L   M    ++PD +T   +L AC+H+GL+ EG   F+S+    
Sbjct: 464 LISGFAANGHGKEAIKLVLTMEEEGIEPDHVTYIGVLTACSHAGLLNEGKNVFKSIQ--- 520

Query: 450 GIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKV 509
              P  +H+AC+++LL +AG  D+    ++ MP +  + ++ +L    RIH  + +G   
Sbjct: 521 --APTVDHYACMVDLLGRAGELDEAKMLIQSMPMKPHAGVYGSLLNASRIHKRVGLGELA 578

Query: 510 VDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHA 569
             +L +  PQ+   + LLS+IY++ G+   V++VR+++ +   KK   +SW+E + +VH 
Sbjct: 579 ASKLFELEPQNLGNYVLLSNIYASFGRWEDVKRVREMMKKGGLKKSVGMSWVEYKGQVHK 638

Query: 570 FSVSDSLHPMRDVLYSVLEQLAGQM 594
           F+V D  H     +Y +L +L  +M
Sbjct: 639 FTVGDRSHEQSKDIYKLLAELERKM 663



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 91/366 (24%), Positives = 167/366 (45%), Gaps = 70/366 (19%)

Query: 140 NLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLE 199
           ++F +    D   ++ M+  Y++ GA  + +  +K     ++    F +  ++ +  K  
Sbjct: 55  SIFTSSPSPDASVYSCMLKYYSRMGAHNQVVSLFKCTHSLNLRPQPFVYIYLIKLAGKSG 114

Query: 200 ELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVS 259
            L      H  VL  G + +  I ++I+D YAK G++  AR LF++   R +  W +M+S
Sbjct: 115 NL-----FHAYVLKLGHIDDHFIRNAILDMYAKNGQVDLARNLFEQMAERTLADWNSMIS 169

Query: 260 GYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNG----------------------- 296
           G  K G+   A  LFN MP +N ++WT+++ GY + G                       
Sbjct: 170 GCWKSGNETEAVVLFNMMPARNIITWTSMVTGYAKMGDLESARRYFDEMPERSVVSWNAM 229

Query: 297 --------LGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNF 348
                     ++AL LF +M+   I P+  T+   + +C+SI        +   + + + 
Sbjct: 230 QSAYAQKECPKEALNLFHQMLEEGITPDDTTWVVTISSCSSIGDPTLADSILRMIDQKHI 289

Query: 349 RSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALT------------- 395
             N+ V ++L+DM++K G L   R +FD   ++ N++ WN MISA T             
Sbjct: 290 VLNSFVKTALLDMHAKFGNLEIARNIFDELGSQRNAVTWNIMISAYTRVGKLSLARELFD 349

Query: 396 ------------------QHGYDEQAIRLFHDMVRS-SVKPDKITLAVILNACTHSGLVQ 436
                             Q+G    +I LF +M+    ++PD++T+A +L+AC H G ++
Sbjct: 350 NMPKRDVVSWNSMIAGYAQNGESAMSIELFKEMISCMDIQPDEVTIASVLSACGHIGALK 409

Query: 437 EGLTYF 442
             L+Y+
Sbjct: 410 --LSYW 413



 Score = 62.4 bits (150), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 64/321 (19%), Positives = 133/321 (41%), Gaps = 50/321 (15%)

Query: 273 LFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVS 332
           +F   P  +   ++ ++  Y+R G   + + LF     L +RP    +   +      ++
Sbjct: 56  IFTSSPSPDASVYSCMLKYYSRMGAHNQVVSLFKCTHSLNLRPQPFVYIYLI-----KLA 110

Query: 333 LKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKE----NSML-- 386
            K G   H ++++     +  + ++++DMY+K G ++  R +F+    +     NSM+  
Sbjct: 111 GKSGNLFHAYVLKLGHIDDHFIRNAILDMYAKNGQVDLARNLFEQMAERTLADWNSMISG 170

Query: 387 ------------------------WNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITL 422
                                   W +M++   + G  E A R F +M   SV    ++ 
Sbjct: 171 CWKSGNETEAVVLFNMMPARNIITWTSMVTGYAKMGDLESARRYFDEMPERSV----VSW 226

Query: 423 AVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAG---CSDQLMNQLE 479
             + +A       +E L  F  M  + GI P+       I   +  G    +D ++  ++
Sbjct: 227 NAMQSAYAQKECPKEALNLFHQMLEE-GITPDDTTWVVTISSCSSIGDPTLADSILRMID 285

Query: 480 KMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRL 539
           +     +S++  AL  +    GN+++ R + D+L  Q  +++ T  ++ S Y+ +GK  L
Sbjct: 286 QKHIVLNSFVKTALLDMHAKFGNLEIARNIFDELGSQ--RNAVTWNIMISAYTRVGKLSL 343

Query: 540 VEKVRQLINERQFKKEQAISW 560
               R+L +     K   +SW
Sbjct: 344 ---ARELFD--NMPKRDVVSW 359


>gi|359492781|ref|XP_002278504.2| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 658

 Score =  305 bits (781), Expect = 5e-80,   Method: Compositional matrix adjust.
 Identities = 173/575 (30%), Positives = 303/575 (52%), Gaps = 43/575 (7%)

Query: 15  LPNNCLIQSFLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRV 74
           LP    + S  +L+      EA+     +    +   + T  F+L+    S++L+ G+ +
Sbjct: 37  LPKLITVSSAFNLLDYATHKEALRVYSRMKALMVEANSFTFTFLLKCFETSQALEDGRVI 96

Query: 75  HLHLKLTQRKTPTTFLSNHLISMYFKCGSDV-DARKVFDKIPVKNLFSYNNMLSGYANLG 133
           H  + L      + F+ N L+  Y  C  ++  A +VF+++P +++ S+N+M+S Y   G
Sbjct: 97  HGEI-LKLGFGSSVFVQNSLLGFYANCSENLGSAYRVFEEMPERDVISWNSMISAYMTRG 155

Query: 134 MMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILT 193
            ++ A  L D M ER++V+WN+++ G +K+G +E                          
Sbjct: 156 EIQSAIGLLDKMPERNIVTWNSVVCGLSKAGNME-------------------------- 189

Query: 194 ICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLT 253
                    L   V  Q+     L N V  +S++  Y + G++  A+ +F +   + V++
Sbjct: 190 ---------LAHSVFEQMP----LRNEVSWNSMISGYVRIGDVRAAQSIFYQMPEKTVVS 236

Query: 254 WTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMI-LR 312
           WT M+SGYA  GD++SA  +FN MP KN VSW  +I+GY  N    +AL +F  M+I   
Sbjct: 237 WTAMISGYATNGDLKSAENIFNHMPVKNVVSWNAMISGYVHNHEFDQALCVFHHMLINGE 296

Query: 313 IRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGR 372
            RP+Q T  S L ACA + SL+HGK ++ ++ +     +  + ++LIDM++KCG + + +
Sbjct: 297 CRPDQTTLISILSACAHLGSLEHGKWINSYIKKNKLHLSIPLGNALIDMFAKCGDVENAK 356

Query: 373 QVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHS 432
           +VF    +K   + W TM+S L  +G   +AI LF  M     KPD +    +L+ACTH 
Sbjct: 357 EVFHHM-SKRCIITWTTMVSGLAVNGKCREAINLFDKMCLEGTKPDDVIFIAVLSACTHG 415

Query: 433 GLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNA 492
           GLV+EG   F+ M  + GI P  EH+ C+++LL +AG  ++ +    +M  + ++ +W  
Sbjct: 416 GLVEEGKRVFDQMVQEFGIKPRIEHYGCMVDLLGRAGKLEEAVRFTARMHLKPNAVIWAT 475

Query: 493 LHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQF 552
           L   C+IHGN D+ + V ++++DQ P + +   L+S++ ++ G+   V   R  + +++ 
Sbjct: 476 LLFCCKIHGNGDLLKSVTEKIMDQEPSNPSYLTLVSNLSASFGRWEDVLSFRVAMRQQRM 535

Query: 553 KKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVL 587
           +K    S I++ N+VH F   D+ H  R  +Y  L
Sbjct: 536 EKVPGCSSIQVGNRVHEFLAKDTRHVQRKEIYRAL 570


>gi|449476974|ref|XP_004154891.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g14470-like [Cucumis sativus]
          Length = 759

 Score =  305 bits (781), Expect = 5e-80,   Method: Compositional matrix adjust.
 Identities = 159/505 (31%), Positives = 287/505 (56%), Gaps = 8/505 (1%)

Query: 92  NHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVV 151
           N +IS  +K G++ +A  +F+ +P +N+ ++ +M++GYA +G ++ AR  FD M ER VV
Sbjct: 165 NSMISGCWKSGNETEAVVLFNMMPARNIITWTSMVTGYAKMGDLESARRYFDEMPERSVV 224

Query: 152 SWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQV 211
           SWN M   YA+    +E L  +  +    I+ ++ ++   ++ C  + +  L   +   +
Sbjct: 225 SWNAMQSAYAQKECPKEALNLFHQMLEEGITPDDTTWVVTISSCSSIGDPTLADSILRMI 284

Query: 212 LVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDA-RDVLTWTTMVSGYAKLGDMESA 270
                + N  + ++++D +AK G L  AR +FDE  + R+ +TW  M+S Y ++G +  A
Sbjct: 285 DQKHIVLNSFVKTALLDMHAKFGNLEIARNIFDELGSQRNAVTWNIMISAYTRVGKLSLA 344

Query: 271 SKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMM-ILRIRPNQHTFSSCLCACAS 329
            +LF+ MP+++ VSW ++IAGY +NG    ++ELF  M+  + I+P++ T +S L AC  
Sbjct: 345 RELFDNMPKRDVVSWNSMIAGYAQNGESAMSIELFKEMISCMDIQPDEVTIASVLSACGH 404

Query: 330 IVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNT 389
           I +LK    V   +   N +      +SLI MYSKCG + D  ++F  T    + + +NT
Sbjct: 405 IGALKLSYWVLDIVREKNIKLGISGFNSLIFMYSKCGSVADAHRIFQ-TMGTRDVVSFNT 463

Query: 390 MISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDL 449
           +IS    +G+ ++AI+L   M    ++PD +T   +L AC+H+GL+ EG   F+S+    
Sbjct: 464 LISGFAANGHGKEAIKLVLTMEEEGIEPDHVTYIGVLTACSHAGLLNEGKNVFKSIQ--- 520

Query: 450 GIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKV 509
              P  +H+AC+++LL +AG  D+    ++ MP +  + ++ +L    RIH  + +G   
Sbjct: 521 --APTVDHYACMVDLLGRAGELDEAKMLIQSMPMKPHAGVYGSLLNASRIHKRVGLGELA 578

Query: 510 VDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHA 569
             +L +  PQ+   + LLS+IY++ G+   V++VR+++ +   KK   +SW+E + +VH 
Sbjct: 579 ASKLFELEPQNLGNYVLLSNIYASFGRWEDVKRVREMMKKGGLKKSVGMSWVEYKGQVHK 638

Query: 570 FSVSDSLHPMRDVLYSVLEQLAGQM 594
           F+V D  H     +Y +L +L  +M
Sbjct: 639 FTVGDRSHEQSKDIYKLLAELERKM 663



 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 90/366 (24%), Positives = 167/366 (45%), Gaps = 70/366 (19%)

Query: 140 NLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLE 199
           ++F +    D   ++ M+  Y++ GA  + +  +K     ++    F +  ++ +  K  
Sbjct: 55  SIFTSSPSPDASVYSCMLKYYSRMGAHNQVVSLFKCTHSLNLRPQPFVYIYLIKLAGKSG 114

Query: 200 ELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVS 259
            +      H  VL  G + +  I ++I+D YAK G++  AR LF++   R +  W +M+S
Sbjct: 115 NM-----FHAYVLKLGHIDDHFIRNAILDMYAKNGQVDLARNLFEQMAERTLADWNSMIS 169

Query: 260 GYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNG----------------------- 296
           G  K G+   A  LFN MP +N ++WT+++ GY + G                       
Sbjct: 170 GCWKSGNETEAVVLFNMMPARNIITWTSMVTGYAKMGDLESARRYFDEMPERSVVSWNAM 229

Query: 297 --------LGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNF 348
                     ++AL LF +M+   I P+  T+   + +C+SI        +   + + + 
Sbjct: 230 QSAYAQKECPKEALNLFHQMLEEGITPDDTTWVVTISSCSSIGDPTLADSILRMIDQKHI 289

Query: 349 RSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALT------------- 395
             N+ V ++L+DM++K G L   R +FD   ++ N++ WN MISA T             
Sbjct: 290 VLNSFVKTALLDMHAKFGNLEIARNIFDELGSQRNAVTWNIMISAYTRVGKLSLARELFD 349

Query: 396 ------------------QHGYDEQAIRLFHDMVRS-SVKPDKITLAVILNACTHSGLVQ 436
                             Q+G    +I LF +M+    ++PD++T+A +L+AC H G ++
Sbjct: 350 NMPKRDVVSWNSMIAGYAQNGESAMSIELFKEMISCMDIQPDEVTIASVLSACGHIGALK 409

Query: 437 EGLTYF 442
             L+Y+
Sbjct: 410 --LSYW 413



 Score = 63.2 bits (152), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 64/321 (19%), Positives = 133/321 (41%), Gaps = 50/321 (15%)

Query: 273 LFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVS 332
           +F   P  +   ++ ++  Y+R G   + + LF     L +RP    +   +      ++
Sbjct: 56  IFTSSPSPDASVYSCMLKYYSRMGAHNQVVSLFKCTHSLNLRPQPFVYIYLI-----KLA 110

Query: 333 LKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKE----NSML-- 386
            K G   H ++++     +  + ++++DMY+K G ++  R +F+    +     NSM+  
Sbjct: 111 GKSGNMFHAYVLKLGHIDDHFIRNAILDMYAKNGQVDLARNLFEQMAERTLADWNSMISG 170

Query: 387 ------------------------WNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITL 422
                                   W +M++   + G  E A R F +M   SV    ++ 
Sbjct: 171 CWKSGNETEAVVLFNMMPARNIITWTSMVTGYAKMGDLESARRYFDEMPERSV----VSW 226

Query: 423 AVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAG---CSDQLMNQLE 479
             + +A       +E L  F  M  + GI P+       I   +  G    +D ++  ++
Sbjct: 227 NAMQSAYAQKECPKEALNLFHQMLEE-GITPDDTTWVVTISSCSSIGDPTLADSILRMID 285

Query: 480 KMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRL 539
           +     +S++  AL  +    GN+++ R + D+L  Q  +++ T  ++ S Y+ +GK  L
Sbjct: 286 QKHIVLNSFVKTALLDMHAKFGNLEIARNIFDELGSQ--RNAVTWNIMISAYTRVGKLSL 343

Query: 540 VEKVRQLINERQFKKEQAISW 560
               R+L +     K   +SW
Sbjct: 344 ---ARELFD--NMPKRDVVSW 359


>gi|413947530|gb|AFW80179.1| hypothetical protein ZEAMMB73_142662 [Zea mays]
          Length = 649

 Score =  305 bits (781), Expect = 5e-80,   Method: Compositional matrix adjust.
 Identities = 152/446 (34%), Positives = 253/446 (56%), Gaps = 3/446 (0%)

Query: 147 ERDV-VSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVK-LEELKLT 204
           ERD  V WN +I G+ +     E    +  + R   +    ++  +L+ C K   ++ L 
Sbjct: 105 ERDTPVVWNALISGHNRCRRFGEACCSFVDMARAGAAPTPVTYVSVLSACGKGTGDVLLG 164

Query: 205 RQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKL 264
            QVHG+V+ +G L ++ + +++VD YA+C ++  A +LFD    R V++WT+++SG  +L
Sbjct: 165 MQVHGRVVGSGVLPDLRVENALVDMYAECADMESAWKLFDGMQVRSVVSWTSLLSGLTRL 224

Query: 265 GDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCL 324
           G ++ A  LF  MPE++ VSWT +I GY +    ++ALE+F  M    +  ++ T  S +
Sbjct: 225 GRVDEARDLFGRMPERDTVSWTAMIDGYVQAARFREALEMFREMQCSNVSADEFTMVSVI 284

Query: 325 CACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENS 384
            ACA + +L+ G+ V  ++ R   + +  V ++LIDMYSKCG +     VF    +++  
Sbjct: 285 TACAQLGALEMGEWVRVYMSRQGIKMDAFVGNALIDMYSKCGSIERALDVFKDMHHRDK- 343

Query: 385 MLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFES 444
             W  +I  L  +GY E+AI +FH M+  S  PD++T   +L ACTH+GLV +G  +F S
Sbjct: 344 FTWTAIILGLAVNGYGEEAIEMFHRMIGVSETPDEVTFIGVLTACTHAGLVDKGREFFLS 403

Query: 445 MTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNID 504
           M     I PN  H+ C+I+L  +AG   + ++ +++MP   +S +W  L   CR+HGN +
Sbjct: 404 MRETYNIAPNVVHYGCIIDLFGRAGKITEALDAIDQMPMTPNSTIWGTLLAACRVHGNSE 463

Query: 505 MGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIE 564
           +G  V ++L+  +P++S  + LLS+IY+   +   V ++R  I E+  KKE   S IE+ 
Sbjct: 464 IGELVTERLLQMDPENSTVYTLLSNIYAKCNRWEDVRRLRHTIMEKGIKKEPGCSLIEMN 523

Query: 565 NKVHAFSVSDSLHPMRDVLYSVLEQL 590
             +H F   D  HPM   +Y  LE +
Sbjct: 524 GIIHEFVAGDQSHPMSKEIYCKLESI 549



 Score =  162 bits (411), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 99/372 (26%), Positives = 174/372 (46%), Gaps = 34/372 (9%)

Query: 32  QLSEAISSLDLLAQRGIRLPAETLAFILQQCAE-SKSLKLGKRVHLHLKLTQRKTPTTFL 90
           +  EA  S   +A+ G      T   +L  C + +  + LG +VH  + +     P   +
Sbjct: 124 RFGEACCSFVDMARAGAAPTPVTYVSVLSACGKGTGDVLLGMQVHGRV-VGSGVLPDLRV 182

Query: 91  SNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDV 150
            N L+ MY +C     A K+FD + V+++ S+ ++LSG   LG +  AR+LF  M ERD 
Sbjct: 183 ENALVDMYAECADMESAWKLFDGMQVRSVVSWTSLLSGLTRLGRVDEARDLFGRMPERDT 242

Query: 151 VSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQ 210
           VSW  MI GY ++    E L+ ++ ++  ++S +EF+   ++T C +L  L++   V   
Sbjct: 243 VSWTAMIDGYVQAARFREALEMFREMQCSNVSADEFTMVSVITACAQLGALEMGEWVRVY 302

Query: 211 VLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESA 270
           +   G   +  + ++++D Y+KCG +  A  +F +   RD  TWT ++ G A        
Sbjct: 303 MSRQGIKMDAFVGNALIDMYSKCGSIERALDVFKDMHHRDKFTWTAIILGLAV------- 355

Query: 271 SKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASI 330
                                   NG G++A+E+F RM+ +   P++ TF   L AC   
Sbjct: 356 ------------------------NGYGEEAIEMFHRMIGVSETPDEVTFIGVLTACTHA 391

Query: 331 VSLKHGKQVHGFLIRT-NFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNT 389
             +  G++    +  T N   N +    +ID++ + G + +     D      NS +W T
Sbjct: 392 GLVDKGREFFLSMRETYNIAPNVVHYGCIIDLFGRAGKITEALDAIDQMPMTPNSTIWGT 451

Query: 390 MISALTQHGYDE 401
           +++A   HG  E
Sbjct: 452 LLAACRVHGNSE 463



 Score = 72.0 bits (175), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 97/439 (22%), Positives = 178/439 (40%), Gaps = 84/439 (19%)

Query: 137 HARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICV 196
           HAR L + +  R +V+        A+  AV     + ++L R ++  + ++F  +L    
Sbjct: 7   HARRLLEGIPRRCLVA--------AREDAVA---GYARMLARGAMP-DAYTFPPLLKAVA 54

Query: 197 KLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTT 256
           +       R VH  V+  G   N  +++S+V AYA  G+ + AR L  E + RD      
Sbjct: 55  RGSSAAPVRAVHAHVVKFGMGRNAHVATSLVTAYAAGGDGAAARALLSERE-RD------ 107

Query: 257 MVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPN 316
                                    PV W  LI+G+ R     +A   F  M      P 
Sbjct: 108 ------------------------TPVVWNALISGHNRCRRFGEACCSFVDMARAGAAPT 143

Query: 317 QHTFSSCLCACASIVS-LKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVF 375
             T+ S L AC      +  G QVHG ++ +    +  V ++L+DMY++C  +    ++F
Sbjct: 144 PVTYVSVLSACGKGTGDVLLGMQVHGRVVGSGVLPDLRVENALVDMYAECADMESAWKLF 203

Query: 376 D----------------LTD--------------NKENSMLWNTMISALTQHGYDEQAIR 405
           D                LT                + +++ W  MI    Q     +A+ 
Sbjct: 204 DGMQVRSVVSWTSLLSGLTRLGRVDEARDLFGRMPERDTVSWTAMIDGYVQAARFREALE 263

Query: 406 LFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELL 465
           +F +M  S+V  D+ T+  ++ AC   G ++ G      M+   GI  +      LI++ 
Sbjct: 264 MFREMQCSNVSADEFTMVSVITACAQLGALEMGEWVRVYMSRQ-GIKMDAFVGNALIDMY 322

Query: 466 AQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHG----NIDMGRKVVDQLIDQNPQSS 521
           ++ G  ++ ++  + M +  D + W A+     ++G     I+M  +++   + + P   
Sbjct: 323 SKCGSIERALDVFKDM-HHRDKFTWTAIILGLAVNGYGEEAIEMFHRMIG--VSETPDEV 379

Query: 522 ATHGLLSSIYSA--LGKGR 538
              G+L++   A  + KGR
Sbjct: 380 TFIGVLTACTHAGLVDKGR 398


>gi|224131262|ref|XP_002328495.1| predicted protein [Populus trichocarpa]
 gi|222838210|gb|EEE76575.1| predicted protein [Populus trichocarpa]
          Length = 580

 Score =  305 bits (781), Expect = 5e-80,   Method: Compositional matrix adjust.
 Identities = 159/489 (32%), Positives = 273/489 (55%), Gaps = 9/489 (1%)

Query: 116 VKNLFSY----NNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLK 171
           V  LFS+    N ++  Y   G+++ A  +F+ M   D+VS+N MI+GYAK G   E ++
Sbjct: 91  VTGLFSFGYLQNTLIKVYLENGLVRLAHQVFEKMPSPDIVSFNVMIVGYAKKGFGLEAMR 150

Query: 172 FYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQV--LVTGFLSNVVISSSIVDA 229
            +  +    +  +EF+  G+L  C +L  +K  + VHG +        SN+++ ++++D 
Sbjct: 151 LFHEMVGLGLEPDEFTILGLLVSCGQLGNVKFGKAVHGWMERRKPTISSNLILGNALLDM 210

Query: 230 YAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLI 289
           Y KC ++  A R F     +D+++W  +V+G AK+G++E A   F +MP ++ VSW +L+
Sbjct: 211 YVKCQKVELALRTFGALKEKDIVSWNMIVAGCAKVGELEQARLFFYQMPCRDIVSWNSLV 270

Query: 290 AGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFR 349
            GY   G      EL   M++ ++ P+  T  S + A     +L  G+  HG++IR   +
Sbjct: 271 TGYACRGDFASVKELIVDMVMEKVIPDTVTMISLVSAATESGALDQGRWAHGWVIRMQIK 330

Query: 350 SNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHD 409
            +  + S+LIDMY KCG +    +VF    NK++  +W TMI+ L  HGY  +A+ LF +
Sbjct: 331 LDAFLGSALIDMYCKCGSIERASRVFKEI-NKKDVTVWTTMITGLAFHGYGSKALELFSE 389

Query: 410 MVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAG 469
           M +  V PD +T   +L+AC+HSGLV +G+  F SMT D GI P  EH+ CL++LLA++G
Sbjct: 390 M-QEDVSPDDVTFVSVLSACSHSGLVDQGIKVFSSMT-DYGIEPGVEHYGCLVDLLARSG 447

Query: 470 CSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSS 529
              +  + +++MP +    +W A+   C+  G++++      +L++ +P+    + LLS+
Sbjct: 448 RLSEAKDIIDQMPMKPSRSIWGAMLNACQAQGDVELAEIASRELLNLDPEEEGGYTLLSN 507

Query: 530 IYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQ 589
           IY+A G+    +K+R+ +  R  KK    S + ++  VH F  +D  HP    + S+L  
Sbjct: 508 IYAASGRWSYSKKIRETMESRGVKKTAGCSSVVVDGVVHNFISADKCHPGWVDISSILNC 567

Query: 590 LAGQMGEDA 598
           L  +M   A
Sbjct: 568 LKNEMKPGA 576



 Score =  135 bits (340), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 96/378 (25%), Positives = 163/378 (43%), Gaps = 39/378 (10%)

Query: 30  KGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTT- 88
           KG   EA+     +   G+     T+  +L  C +  ++K GK VH      +R+ PT  
Sbjct: 142 KGFGLEAMRLFHEMVGLGLEPDEFTILGLLVSCGQLGNVKFGKAVH---GWMERRKPTIS 198

Query: 89  ---FLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNM 145
               L N L+ MY KC     A + F  +  K++ S+N +++G A +G ++ AR  F  M
Sbjct: 199 SNLILGNALLDMYVKCQKVELALRTFGALKEKDIVSWNMIVAGCAKVGELEQARLFFYQM 258

Query: 146 AERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTR 205
             RD+VSWN+++ GYA  G      +    +    +  +  +   +++   +   L   R
Sbjct: 259 PCRDIVSWNSLVTGYACRGDFASVKELIVDMVMEKVIPDTVTMISLVSAATESGALDQGR 318

Query: 206 QVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLG 265
             HG V+      +  + S+++D Y KCG +  A R+F E + +DV  WTTM++G A  G
Sbjct: 319 WAHGWVIRMQIKLDAFLGSALIDMYCKCGSIERASRVFKEINKKDVTVWTTMITGLAFHG 378

Query: 266 DMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLC 325
               A +LF+EM E                                 + P+  TF S L 
Sbjct: 379 YGSKALELFSEMQED--------------------------------VSPDDVTFVSVLS 406

Query: 326 ACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSM 385
           AC+    +  G +V   +              L+D+ ++ G L++ + + D    K +  
Sbjct: 407 ACSHSGLVDQGIKVFSSMTDYGIEPGVEHYGCLVDLLARSGRLSEAKDIIDQMPMKPSRS 466

Query: 386 LWNTMISALTQHGYDEQA 403
           +W  M++A    G  E A
Sbjct: 467 IWGAMLNACQAQGDVELA 484



 Score = 93.2 bits (230), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 83/372 (22%), Positives = 155/372 (41%), Gaps = 70/372 (18%)

Query: 204 TRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAK 263
            +Q+H Q +VTG  S   + ++++  Y + G +  A ++F++  + D++++  M+ GYAK
Sbjct: 82  VKQIHCQAIVTGLFSFGYLQNTLIKVYLENGLVRLAHQVFEKMPSPDIVSFNVMIVGYAK 141

Query: 264 LGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSC 323
                                           G G +A+ LF  M+ L + P++ T    
Sbjct: 142 -------------------------------KGFGLEAMRLFHEMVGLGLEPDEFTILGL 170

Query: 324 LCACASIVSLKHGKQVHGFLIR--TNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNK 381
           L +C  + ++K GK VHG++ R      SN I+ ++L+DMY KC  +    + F     K
Sbjct: 171 LVSCGQLGNVKFGKAVHGWMERRKPTISSNLILGNALLDMYVKCQKVELALRTFGALKEK 230

Query: 382 ENSMLWNTMISALTQHGYDEQAIRLFH-------------------------------DM 410
           +  + WN +++   + G  EQA   F+                               DM
Sbjct: 231 D-IVSWNMIVAGCAKVGELEQARLFFYQMPCRDIVSWNSLVTGYACRGDFASVKELIVDM 289

Query: 411 VRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGC 470
           V   V PD +T+  +++A T SG + +G  +       + I  +    + LI++  + G 
Sbjct: 290 VMEKVIPDTVTMISLVSAATESGALDQG-RWAHGWVIRMQIKLDAFLGSALIDMYCKCG- 347

Query: 471 SDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSI 530
           S +  +++ K   + D  +W  +      HG    G K ++   +     S       S+
Sbjct: 348 SIERASRVFKEINKKDVTVWTTMITGLAFHG---YGSKALELFSEMQEDVSPDDVTFVSV 404

Query: 531 YSALGKGRLVEK 542
            SA     LV++
Sbjct: 405 LSACSHSGLVDQ 416


>gi|15228064|ref|NP_181235.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206293|sp|Q9SJK9.1|PP189_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g36980, mitochondrial; Flags: Precursor
 gi|4883614|gb|AAD31583.1| hypothetical protein [Arabidopsis thaliana]
 gi|330254236|gb|AEC09330.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 625

 Score =  305 bits (781), Expect = 5e-80,   Method: Compositional matrix adjust.
 Identities = 173/544 (31%), Positives = 281/544 (51%), Gaps = 9/544 (1%)

Query: 58  ILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPV- 116
           IL  CA   ++K G+++   L +      +  ++N LI MY KC   + A KVF  +   
Sbjct: 76  ILSTCASLGNVKFGRKIQ-SLVIRSGFCASLPVNNSLIDMYGKCSDTLSANKVFRDMCCD 134

Query: 117 -KNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKV 175
            +N  ++ ++L  Y N    + A ++F  M +R   +WN MI G+A  G +E  L  +K 
Sbjct: 135 SRNEVTWCSLLFAYMNAEQFEAALDVFVEMPKRVAFAWNIMISGHAHCGKLESCLSLFKE 194

Query: 176 LRRFSISCNEFSFAGILTIC-VKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCG 234
           +       + ++F+ ++  C      +   R VH  +L  G+ S V   +S++  Y K G
Sbjct: 195 MLESEFKPDCYTFSSLMNACSADSSNVVYGRMVHAVMLKNGWSSAVEAKNSVLSFYTKLG 254

Query: 235 ELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTR 294
              DA R  +  +    ++W +++    K+G+ E A ++F+  PEKN V+WTT+I GY R
Sbjct: 255 SRDDAMRELESIEVLTQVSWNSIIDACMKIGETEKALEVFHLAPEKNIVTWTTMITGYGR 314

Query: 295 NGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIV 354
           NG G++AL  F  MM   +  +   + + L AC+ +  L HGK +HG LI   F+    V
Sbjct: 315 NGDGEQALRFFVEMMKSGVDSDHFAYGAVLHACSGLALLGHGKMIHGCLIHCGFQGYAYV 374

Query: 355 MSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSS 414
            ++L+++Y+KCG + +  + F    NK+  + WNTM+ A   HG  +QA++L+ +M+ S 
Sbjct: 375 GNALVNLYAKCGDIKEADRAFGDIANKD-LVSWNTMLFAFGVHGLADQALKLYDNMIASG 433

Query: 415 VKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAG----C 470
           +KPD +T   +L  C+HSGLV+EG   FESM  D  I    +H  C+I++  + G     
Sbjct: 434 IKPDNVTFIGLLTTCSHSGLVEEGCMIFESMVKDYRIPLEVDHVTCMIDMFGRGGHLAEA 493

Query: 471 SDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSI 530
            D        +    ++  W  L G C  H + ++GR+V   L    P    +  LLS++
Sbjct: 494 KDLATTYSSLVTDSSNNSSWETLLGACSTHWHTELGREVSKVLKIAEPSEEMSFVLLSNL 553

Query: 531 YSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQL 590
           Y + G+ +  E VR+ + ER  KK    SWIE+ N+V  F V DS HP  + L   L  L
Sbjct: 554 YCSTGRWKEGEDVRREMVERGMKKTPGCSWIEVGNQVSTFVVGDSSHPRLEELSETLNCL 613

Query: 591 AGQM 594
             +M
Sbjct: 614 QHEM 617



 Score =  181 bits (458), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 117/440 (26%), Positives = 208/440 (47%), Gaps = 39/440 (8%)

Query: 126 LSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNE 185
           ++  A  G +  AR +FD M E D V+WNTM+  Y++ G  +E +  +  LR      ++
Sbjct: 11  IASLAKSGRIASARQVFDGMPELDTVAWNTMLTSYSRLGLHQEAIALFTQLRFSDAKPDD 70

Query: 186 FSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDE 245
           +SF  IL+ C  L  +K  R++   V+ +GF +++ +++S++D Y KC +   A ++F +
Sbjct: 71  YSFTAILSTCASLGNVKFGRKIQSLVIRSGFCASLPVNNSLIDMYGKCSDTLSANKVFRD 130

Query: 246 --TDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALE 303
              D+R+ +TW +++  Y      E+A  +F EMP++   +W  +I+G+   G  +  L 
Sbjct: 131 MCCDSRNEVTWCSLLFAYMNAEQFEAALDVFVEMPKRVAFAWNIMISGHAHCGKLESCLS 190

Query: 304 LFTRMMILRIRPNQHTFSSCLCACASIVS-LKHGKQVHGFLIRTNFRSNTIVMSSLIDMY 362
           LF  M+    +P+ +TFSS + AC++  S + +G+ VH  +++  + S     +S++  Y
Sbjct: 191 LFKEMLESEFKPDCYTFSSLMNACSADSSNVVYGRMVHAVMLKNGWSSAVEAKNSVLSFY 250

Query: 363 SKCG--------------------------CLNDGR-----QVFDLTDNKENSMLWNTMI 391
           +K G                          C+  G      +VF L   K N + W TMI
Sbjct: 251 TKLGSRDDAMRELESIEVLTQVSWNSIIDACMKIGETEKALEVFHLAPEK-NIVTWTTMI 309

Query: 392 SALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGI 451
           +   ++G  EQA+R F +M++S V  D      +L+AC+   L+  G      + H  G 
Sbjct: 310 TGYGRNGDGEQALRFFVEMMKSGVDSDHFAYGAVLHACSGLALLGHGKMIHGCLIH-CGF 368

Query: 452 IPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVD 511
                    L+ L A+ G   +       +    D   WN +     +HG  D   K+ D
Sbjct: 369 QGYAYVGNALVNLYAKCGDIKEADRAFGDIA-NKDLVSWNTMLFAFGVHGLADQALKLYD 427

Query: 512 QLIDQN--PQSSATHGLLSS 529
            +I     P +    GLL++
Sbjct: 428 NMIASGIKPDNVTFIGLLTT 447



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 79/299 (26%), Positives = 136/299 (45%), Gaps = 41/299 (13%)

Query: 255 TTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIR 314
           T+ ++  AK G + SA ++F+ MPE + V+W T++  Y+R GL Q+A+ LFT++     +
Sbjct: 8   TSKIASLAKSGRIASARQVFDGMPELDTVAWNTMLTSYSRLGLHQEAIALFTQLRFSDAK 67

Query: 315 PNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQV 374
           P+ ++F++ L  CAS+ ++K G+++   +IR+ F ++  V +SLIDMY KC       +V
Sbjct: 68  PDDYSFTAILSTCASLGNVKFGRKIQSLVIRSGFCASLPVNNSLIDMYGKCSDTLSANKV 127

Query: 375 F-DLTDNKEN-------------------------------SMLWNTMISALTQHGYDEQ 402
           F D+  +  N                               +  WN MIS     G  E 
Sbjct: 128 FRDMCCDSRNEVTWCSLLFAYMNAEQFEAALDVFVEMPKRVAFAWNIMISGHAHCGKLES 187

Query: 403 AIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDL----GIIPNQEHH 458
            + LF +M+ S  KPD  T + ++NAC+           +  M H +    G     E  
Sbjct: 188 CLSLFKEMLESEFKPDCYTFSSLMNACS----ADSSNVVYGRMVHAVMLKNGWSSAVEAK 243

Query: 459 ACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQN 517
             ++    + G  D  M +LE +        WN++   C   G  +   +V     ++N
Sbjct: 244 NSVLSFYTKLGSRDDAMRELESIEV-LTQVSWNSIIDACMKIGETEKALEVFHLAPEKN 301


>gi|449467092|ref|XP_004151259.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like [Cucumis sativus]
          Length = 849

 Score =  305 bits (780), Expect = 6e-80,   Method: Compositional matrix adjust.
 Identities = 176/579 (30%), Positives = 294/579 (50%), Gaps = 64/579 (11%)

Query: 27  LISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTP 86
           L+  G   EAI     +   G      TL+ ++  CA  + L LG+++H    +    T 
Sbjct: 246 LMQFGYAGEAIDLFLEMILSGYEPDRFTLSGVISACANMELLLLGQQLHSQ-AIRHGLTL 304

Query: 87  TTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMA 146
              +   LI+MY KC  D                            G M  AR +FD + 
Sbjct: 305 DRCVGCCLINMYAKCSVD----------------------------GSMCAARKIFDQIL 336

Query: 147 ERDVVSWNTMIIGYAKSGAV-EEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTR 205
           + +V SW  MI GY + G   EE L  ++ +    +  N F+F+  L  C  L  L++  
Sbjct: 337 DHNVFSWTAMITGYVQKGGYDEEALDLFRGMILTHVIPNHFTFSSTLKACANLAALRIGE 396

Query: 206 QVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLG 265
           QV    +  GF S   +++S++  YA+ G +          DAR                
Sbjct: 397 QVFTHAVKLGFSSVNCVANSLISMYARSGRID---------DAR---------------- 431

Query: 266 DMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLC 325
                 K F+ + EKN +S+ T+I  Y +N   ++ALELF  +    +  +  TF+S L 
Sbjct: 432 ------KAFDILFEKNLISYNTVIDAYAKNLNSEEALELFNEIEDQGMGASAFTFASLLS 485

Query: 326 ACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSM 385
             ASI ++  G+Q+H  +I++  + N  V ++LI MYS+CG +    QVF+  +++ N +
Sbjct: 486 GAASIGTIGKGEQIHARVIKSGLKLNQSVCNALISMYSRCGNIESAFQVFEDMEDR-NVI 544

Query: 386 LWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESM 445
            W ++I+   +HG+  QA+ LFH M+   V+P+ +T   +L+AC+H GLV EG  +F+SM
Sbjct: 545 SWTSIITGFAKHGFATQALELFHKMLEEGVRPNLVTYIAVLSACSHVGLVNEGWKHFKSM 604

Query: 446 THDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDM 505
             + G+IP  EH+AC++++L ++G   + +  +  MPY+ D+ +W    G CR+HGN+++
Sbjct: 605 YTEHGVIPRMEHYACMVDILGRSGSLSEAIQFINSMPYKADALVWRTFLGACRVHGNLEL 664

Query: 506 GRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIEN 565
           G+     +I+Q P   A + LLS++Y++  K   V  +R+ + E+   KE   SW+E+EN
Sbjct: 665 GKHAAKMIIEQEPHDPAAYILLSNLYASTSKWDEVSNIRKAMKEKNLIKEAGCSWVEVEN 724

Query: 566 KVHAFSVSDSLHPMRDVLYSVLEQLAGQMGE--DAPSLD 602
           KVH F V D+ HP    +Y  L+ L+ ++ +    P+LD
Sbjct: 725 KVHKFYVGDTSHPKAAEIYDELQNLSVKIKKLGYVPNLD 763



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 142/539 (26%), Positives = 234/539 (43%), Gaps = 110/539 (20%)

Query: 18  NCLIQSFLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLH 77
           N L    +  I+ G+L +AIS+L+ +  +G     +T +  L++C  ++S  +G  VH  
Sbjct: 32  NPLTGRLIQEINNGRLHKAISTLEHMVHQGSHPDLQTYSLFLKKCIRTRSFDIGTLVHEK 91

Query: 78  LKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKI-PVKNLFSYNNMLSGYANLGMMK 136
           L  +  +  +  L N LIS+Y KCG    A  +F  +   ++L S++ M+S +AN     
Sbjct: 92  LTQSDLQLDSVTL-NSLISLYSKCGQWEKATSIFQLMGSSRDLISWSAMVSCFAN----- 145

Query: 137 HARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICV 196
                 +NM  R ++++  MI         E G  +Y          NE+ FA     C 
Sbjct: 146 ------NNMGFRALLTFVDMI---------ENG--YYP---------NEYCFAAATRACS 179

Query: 197 KLEELKLTRQVHGQVLVTGFL-SNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWT 255
             E + +   + G V+ TG+L S+V +   ++D + K                       
Sbjct: 180 TAEFVSVGDSIFGFVVKTGYLQSDVCVGCGLIDMFVK----------------------- 216

Query: 256 TMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRP 315
                    GD+ SA K+F +MPE+N V+WT +I    + G   +A++LF  M++    P
Sbjct: 217 -------GRGDLVSAFKVFEKMPERNAVTWTLMITRLMQFGYAGEAIDLFLEMILSGYEP 269

Query: 316 NQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKC---GCLNDGR 372
           ++ T S  + ACA++  L  G+Q+H   IR     +  V   LI+MY+KC   G +   R
Sbjct: 270 DRFTLSGVISACANMELLLLGQQLHSQAIRHGLTLDRCVGCCLINMYAKCSVDGSMCAAR 329

Query: 373 QVFD-LTDNKENSMLWNTMISALTQH-GYDEQAIRLFHDMVRSSVKPDKITLAVILNACT 430
           ++FD + D+  N   W  MI+   Q  GYDE+A+ LF  M+ + V P+  T +  L AC 
Sbjct: 330 KIFDQILDH--NVFSWTAMITGYVQKGGYDEEALDLFRGMILTHVIPNHFTFSSTLKACA 387

Query: 431 HSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLW 490
           +                                 LA     +Q+     K+ +   + + 
Sbjct: 388 N---------------------------------LAALRIGEQVFTHAVKLGFSSVNCVA 414

Query: 491 NALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINE 549
           N+L  +    G ID  RK  D L ++N  S  T      +  A  K    E+  +L NE
Sbjct: 415 NSLISMYARSGRIDDARKAFDILFEKNLISYNT------VIDAYAKNLNSEEALELFNE 467



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 53/215 (24%), Positives = 92/215 (42%), Gaps = 4/215 (1%)

Query: 281 NPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVH 340
           NP   T  +     NG   KA+     M+     P+  T+S  L  C    S   G  VH
Sbjct: 30  NPNPLTGRLIQEINNGRLHKAISTLEHMVHQGSHPDLQTYSLFLKKCIRTRSFDIGTLVH 89

Query: 341 GFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYD 400
             L +++ + +++ ++SLI +YSKCG       +F L  +  + + W+ M+S    +   
Sbjct: 90  EKLTQSDLQLDSVTLNSLISLYSKCGQWEKATSIFQLMGSSRDLISWSAMVSCFANNNMG 149

Query: 401 EQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHAC 460
            +A+  F DM+ +   P++   A    AC+ +  V  G + F       G + +     C
Sbjct: 150 FRALLTFVDMIENGYYPNEYCFAAATRACSTAEFVSVGDSIF-GFVVKTGYLQSDVCVGC 208

Query: 461 -LIELLAQA-GCSDQLMNQLEKMPYEHDSYLWNAL 493
            LI++  +  G         EKMP E ++  W  +
Sbjct: 209 GLIDMFVKGRGDLVSAFKVFEKMP-ERNAVTWTLM 242


>gi|15241448|ref|NP_199236.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170229|sp|Q9FFG8.1|PP417_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g44230
 gi|9759524|dbj|BAB10990.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|91806984|gb|ABE66219.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332007694|gb|AED95077.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 657

 Score =  305 bits (780), Expect = 6e-80,   Method: Compositional matrix adjust.
 Identities = 153/465 (32%), Positives = 266/465 (57%), Gaps = 5/465 (1%)

Query: 134 MMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILT 193
           M  +AR + + +  R+   W  +I GYA  G  +E +  Y  +R+  I+   F+F+ +L 
Sbjct: 98  MDPYARRVIEPVQFRNPFLWTAVIRGYAIEGKFDEAIAMYGCMRKEEITPVSFTFSALLK 157

Query: 194 ICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLT 253
            C  +++L L RQ H Q         V + ++++D Y KC  +  AR++FDE   RDV++
Sbjct: 158 ACGTMKDLNLGRQFHAQTFRLRGFCFVYVGNTMIDMYVKCESIDCARKVFDEMPERDVIS 217

Query: 254 WTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRI 313
           WT +++ YA++G+ME A++LF  +P K+ V+WT ++ G+ +N   Q+ALE F RM    I
Sbjct: 218 WTELIAAYARVGNMECAAELFESLPTKDMVAWTAMVTGFAQNAKPQEALEYFDRMEKSGI 277

Query: 314 RPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNF--RSNTIVMSSLIDMYSKCGCLNDG 371
           R ++ T +  + ACA + + K+  +      ++ +    + ++ S+LIDMYSKCG + + 
Sbjct: 278 RADEVTVAGYISACAQLGASKYADRAVQIAQKSGYSPSDHVVIGSALIDMYSKCGNVEEA 337

Query: 372 RQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMV-RSSVKPDKITLAVILNACT 430
             VF ++ N +N   +++MI  L  HG  ++A+ LFH MV ++ +KP+ +T    L AC+
Sbjct: 338 VNVF-MSMNNKNVFTYSSMILGLATHGRAQEALHLFHYMVTQTEIKPNTVTFVGALMACS 396

Query: 431 HSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLW 490
           HSGLV +G   F+SM    G+ P ++H+ C+++LL + G   + +  ++ M  E    +W
Sbjct: 397 HSGLVDQGRQVFDSMYQTFGVQPTRDHYTCMVDLLGRTGRLQEALELIKTMSVEPHGGVW 456

Query: 491 NALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINER 550
            AL G CRIH N ++     + L +  P     + LLS++Y++ G    V +VR+LI E+
Sbjct: 457 GALLGACRIHNNPEIAEIAAEHLFELEPDIIGNYILLSNVYASAGDWGGVLRVRKLIKEK 516

Query: 551 QFKKEQAISWIEIEN-KVHAFSVSDSLHPMRDVLYSVLEQLAGQM 594
             KK  A+SW+  +N ++H F   +  HPM + +   LE+L  ++
Sbjct: 517 GLKKTPAVSWVVDKNGQMHKFFPGNLNHPMSNKIQDKLEELVERL 561



 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 95/378 (25%), Positives = 182/378 (48%), Gaps = 36/378 (9%)

Query: 30  KGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTF 89
           +G+  EAI+    + +  I   + T + +L+ C   K L LG++ H       R     +
Sbjct: 127 EGKFDEAIAMYGCMRKEEITPVSFTFSALLKACGTMKDLNLGRQFHAQ-TFRLRGFCFVY 185

Query: 90  LSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERD 149
           + N +I MY KC S   ARKVFD++P +++ S+  +++ YA +G M+ A  LF+++  +D
Sbjct: 186 VGNTMIDMYVKCESIDCARKVFDEMPERDVISWTELIAAYARVGNMECAAELFESLPTKD 245

Query: 150 VVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHG 209
           +V+W  M+ G+A++   +E L+++  + +  I  +E + AG ++ C +L   K   +   
Sbjct: 246 MVAWTAMVTGFAQNAKPQEALEYFDRMEKSGIRADEVTVAGYISACAQLGASKYADRAVQ 305

Query: 210 QVLVTGF--LSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDM 267
               +G+    +VVI S+++D Y+KCG + +A  +F   + ++V T+++M+ G A     
Sbjct: 306 IAQKSGYSPSDHVVIGSALIDMYSKCGNVEEAVNVFMSMNNKNVFTYSSMILGLAT---- 361

Query: 268 ESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMI-LRIRPNQHTFSSCLCA 326
                                      +G  Q+AL LF  M+    I+PN  TF   L A
Sbjct: 362 ---------------------------HGRAQEALHLFHYMVTQTEIKPNTVTFVGALMA 394

Query: 327 CASIVSLKHGKQVHGFLIRT-NFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSM 385
           C+    +  G+QV   + +T   +      + ++D+  + G L +  ++      + +  
Sbjct: 395 CSHSGLVDQGRQVFDSMYQTFGVQPTRDHYTCMVDLLGRTGRLQEALELIKTMSVEPHGG 454

Query: 386 LWNTMISALTQHGYDEQA 403
           +W  ++ A   H   E A
Sbjct: 455 VWGALLGACRIHNNPEIA 472



 Score = 47.0 bits (110), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 28/111 (25%), Positives = 51/111 (45%), Gaps = 3/111 (2%)

Query: 321 SSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLND--GRQVFDLT 378
           SS +      ++L   KQ+HG ++R     +  +++ LI   +K G   D   R+V +  
Sbjct: 50  SSLISKLDDCINLNQIKQIHGHVLRKGLDQSCYILTKLIRTLTKLGVPMDPYARRVIEPV 109

Query: 379 DNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNAC 429
             + N  LW  +I      G  ++AI ++  M +  + P   T + +L AC
Sbjct: 110 QFR-NPFLWTAVIRGYAIEGKFDEAIAMYGCMRKEEITPVSFTFSALLKAC 159


>gi|357508407|ref|XP_003624492.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355499507|gb|AES80710.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1125

 Score =  305 bits (780), Expect = 6e-80,   Method: Compositional matrix adjust.
 Identities = 172/544 (31%), Positives = 294/544 (54%), Gaps = 74/544 (13%)

Query: 123 NNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSIS 182
           N++L  Y     +  A  LF+++ ERD V++N ++ GY+K G   E +  +  ++     
Sbjct: 237 NSLLDSYCKTRSLGLAFQLFNDIPERDSVTFNALLTGYSKEGFNREAINLFFKMQEVGYR 296

Query: 183 CNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVD-------------- 228
             EF+FA ILT  ++L++++  +QVHG V+   F+ NV ++++++D              
Sbjct: 297 PTEFTFAAILTAGIQLDDIEFGQQVHGFVVKCNFVWNVFVANALLDFYSKHDRVVEASKL 356

Query: 229 -----------------AYAKCGELSDARRLFDE-------------------------- 245
                             YA  G + ++  LF E                          
Sbjct: 357 FYEMPEVDGISYNVLVTCYAWNGRVKESLELFKELQFTGFDRRNFPFATLLSIAAISLNL 416

Query: 246 ------------TDA-RDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGY 292
                       TDA  ++L   ++V  YAK G+   A+++F+++  ++ V WT +I+ Y
Sbjct: 417 DIGRQIHSQTIVTDAISEILVGNSLVDMYAKCGEFGEANRIFSDLAIQSSVPWTAMISSY 476

Query: 293 TRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNT 352
            + GL +  L+LF  M   +I  +  T++S + ACAS+ SL  GKQ+H  +I + + SN 
Sbjct: 477 VQKGLHEDGLKLFVEMQRAKIGADAATYASIVRACASLASLTLGKQLHSHIIGSGYISNV 536

Query: 353 IVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVR 412
              S+L+DMY+KCG + D  Q+F     + NS+ WN +ISA  Q+G  +  +RLF +MVR
Sbjct: 537 FSGSALVDMYAKCGSIKDALQMFQEMPVR-NSVSWNALISAYAQNGDGDCTLRLFEEMVR 595

Query: 413 SSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSD 472
           S ++PD ++L  IL AC+H GLV+EGL YF+SMT    ++P +EH+A  I++L + G  D
Sbjct: 596 SGLQPDSVSLLSILCACSHCGLVEEGLQYFDSMTRIYKLVPKKEHYASTIDMLCRGGRFD 655

Query: 473 QLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNP-QSSATHGLLSSIY 531
           +    + +MP+E D  +W+++   C IH N ++ +K  +QL +    + +A +  +S+IY
Sbjct: 656 EAEKLMAQMPFEPDEIMWSSVLNSCGIHKNQELAKKAANQLFNMKVLRDAAPYVTMSNIY 715

Query: 532 SALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHP-MRDVLYSVLEQL 590
           +A G+   V KV++ + ER  KK  A SW+EI++K H F+ +D  HP MR+++   L++L
Sbjct: 716 AAAGEWDNVGKVKKAMRERGVKKVPAYSWVEIKHKTHVFTANDKTHPQMREIMKK-LDEL 774

Query: 591 AGQM 594
             +M
Sbjct: 775 EEKM 778



 Score =  174 bits (440), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 104/374 (27%), Positives = 190/374 (50%), Gaps = 36/374 (9%)

Query: 58  ILQQCAESKSLKL-GKRVHLHLKLTQRKT---PTTFLSNHLISMYFKCGSDVDARKVFDK 113
           I++ C  +    L   + HLH+  +  KT   P T+ SN L+  + + G    ARK+FD+
Sbjct: 67  IIKPCTRNLVTTLTAPKPHLHVDASIIKTGFNPNTYRSNFLVKSFLQRGDLNGARKLFDE 126

Query: 114 IPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFY 173
           +P KN+FS N M+ GY   G +  AR LFD+M +R  V+W  +I GYA++    E    +
Sbjct: 127 MPHKNIFSTNTMIMGYIKSGNLSEARTLFDSMFQRTAVTWTMLIGGYAQNNQFREAFGLF 186

Query: 174 KVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKC 233
             + R  I  +  S A +L+   + + +   RQVH  V+  G+ S +V+S+S++D+Y K 
Sbjct: 187 IEMGRHGIDPDHVSLATLLSGFTEFDSVNEVRQVHSHVIKLGYDSTLVVSNSLLDSYCKT 246

Query: 234 GELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYT 293
             L  A +LF++   RD +T+  +++GY+K                              
Sbjct: 247 RSLGLAFQLFNDIPERDSVTFNALLTGYSK------------------------------ 276

Query: 294 RNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTI 353
             G  ++A+ LF +M  +  RP + TF++ L A   +  ++ G+QVHGF+++ NF  N  
Sbjct: 277 -EGFNREAINLFFKMQEVGYRPTEFTFAAILTAGIQLDDIEFGQQVHGFVVKCNFVWNVF 335

Query: 354 VMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRS 413
           V ++L+D YSK   + +  ++F     + + + +N +++    +G  ++++ LF ++  +
Sbjct: 336 VANALLDFYSKHDRVVEASKLF-YEMPEVDGISYNVLVTCYAWNGRVKESLELFKELQFT 394

Query: 414 SVKPDKITLAVILN 427
                    A +L+
Sbjct: 395 GFDRRNFPFATLLS 408



 Score =  129 bits (323), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 69/223 (30%), Positives = 121/223 (54%), Gaps = 1/223 (0%)

Query: 206 QVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLG 265
            V   ++ TGF  N   S+ +V ++ + G+L+ AR+LFDE   +++ +  TM+ GY K G
Sbjct: 87  HVDASIIKTGFNPNTYRSNFLVKSFLQRGDLNGARKLFDEMPHKNIFSTNTMIMGYIKSG 146

Query: 266 DMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLC 325
           ++  A  LF+ M ++  V+WT LI GY +N   ++A  LF  M    I P+  + ++ L 
Sbjct: 147 NLSEARTLFDSMFQRTAVTWTMLIGGYAQNNQFREAFGLFIEMGRHGIDPDHVSLATLLS 206

Query: 326 ACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSM 385
                 S+   +QVH  +I+  + S  +V +SL+D Y K   L    Q+F+    ++ S+
Sbjct: 207 GFTEFDSVNEVRQVHSHVIKLGYDSTLVVSNSLLDSYCKTRSLGLAFQLFNDIPERD-SV 265

Query: 386 LWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNA 428
            +N +++  ++ G++ +AI LF  M     +P + T A IL A
Sbjct: 266 TFNALLTGYSKEGFNREAINLFFKMQEVGYRPTEFTFAAILTA 308



 Score = 46.2 bits (108), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 46/90 (51%), Gaps = 6/90 (6%)

Query: 348 FRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLF 407
           F +NT++M      Y K G L++ R +FD +  +  ++ W  +I    Q+    +A  LF
Sbjct: 133 FSTNTMIMG-----YIKSGNLSEARTLFD-SMFQRTAVTWTMLIGGYAQNNQFREAFGLF 186

Query: 408 HDMVRSSVKPDKITLAVILNACTHSGLVQE 437
            +M R  + PD ++LA +L+  T    V E
Sbjct: 187 IEMGRHGIDPDHVSLATLLSGFTEFDSVNE 216


>gi|345505220|gb|AEN99834.1| chlororespiratory reduction 4 [Draba nemorosa]
          Length = 612

 Score =  305 bits (780), Expect = 6e-80,   Method: Compositional matrix adjust.
 Identities = 175/534 (32%), Positives = 284/534 (53%), Gaps = 43/534 (8%)

Query: 42  LLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKC 101
           L+ + G+ +   +L+ +L+ C+    +K G ++H  L+ T   +   +L N LI +Y KC
Sbjct: 111 LMLETGVSVDKFSLSLVLKACSRLGFVKEGMQIHGFLRKTGIWS-DLYLQNCLIGLYIKC 169

Query: 102 GSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAE--RDVVSWNTMIIG 159
           G    AR+VFD++P ++  SYN+M+ GY   GM++ AR LFD M +  ++++SWN MI G
Sbjct: 170 GCLGYARQVFDRMPRRDSVSYNSMIDGYVKCGMIESARGLFDLMPKEKKNLISWNFMISG 229

Query: 160 YAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSN 219
           YA+     +G+   K                           KL  ++  + L++     
Sbjct: 230 YAQRA---DGVNVAK---------------------------KLFDEMPEKDLISW---- 255

Query: 220 VVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPE 279
               +S++D Y K G + DA+ LF++   RDV+TW TMV GYAKLG +  A  LF+ MP 
Sbjct: 256 ----NSLIDGYVKHGRMEDAKSLFNKMPKRDVVTWATMVDGYAKLGFVHQAKSLFDRMPL 311

Query: 280 KNPVSWTTLIAGYTRNGLGQKALELFTRM-MILRIRPNQHTFSSCLCACASIVSLKHGKQ 338
           ++ V++ ++I GY +N   ++A+ +F  M     + P++ T    L A A +  L     
Sbjct: 312 RDVVAYNSMITGYVQNRYHKEAIGIFNDMEKESHLSPDETTLVIVLSAIAQLGRLSKAVD 371

Query: 339 VHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHG 398
           +H +++   FR    +  +LID YSKCG +    +VF+  +NK     WN MI  L  HG
Sbjct: 372 IHLYIMDNKFRLGGKLGVALIDTYSKCGSIQKSMRVFEEIENKSIDH-WNAMIGGLAIHG 430

Query: 399 YDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHH 458
             E A  +   + + S+KPD IT   +LNAC+HSGLV+EGL  FE M     I P  +H+
Sbjct: 431 LGESAFDMLLQIEKRSIKPDDITFIGVLNACSHSGLVKEGLLCFELMRRKHKIEPKLQHY 490

Query: 459 ACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNP 518
            C++++L+++G  +   N +E+MP E +  +W      C  H   + G  V   L  Q  
Sbjct: 491 GCMVDILSRSGSIELAKNLIEEMPIEPNDVIWRTFLTACSNHKEFETGELVAKHLFLQGG 550

Query: 519 QSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSV 572
            + ++  LLS++Y++ G  + V +VR  + ER+ +K    SWIE++  VH F V
Sbjct: 551 YNPSSFVLLSNMYASFGMWKEVRRVRTTMKERKLRKIPGCSWIELDGNVHEFFV 604



 Score =  139 bits (350), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 105/394 (26%), Positives = 195/394 (49%), Gaps = 30/394 (7%)

Query: 137 HARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICV 196
           H  ++  N    D   WN +I  ++      + L  + ++    +S ++FS + +L  C 
Sbjct: 73  HEYHVCSNGDFEDPFLWNAVIKSHSHGLDPRKALLLFCLMLETGVSVDKFSLSLVLKACS 132

Query: 197 KLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTT 256
           +L  +K   Q+HG +  TG  S++ + + ++  Y KCG L  AR++FD    RD +++ +
Sbjct: 133 RLGFVKEGMQIHGFLRKTGIWSDLYLQNCLIGLYIKCGCLGYARQVFDRMPRRDSVSYNS 192

Query: 257 MVSGYAKLGDMESASKLFNEMP--EKNPVSWTTLIAGYTRNGLG-QKALELFTRMMILRI 313
           M+ GY K G +ESA  LF+ MP  +KN +SW  +I+GY +   G   A +LF  M     
Sbjct: 193 MIDGYVKCGMIESARGLFDLMPKEKKNLISWNFMISGYAQRADGVNVAKKLFDEM----- 247

Query: 314 RPNQHTFSSCLCACASIVS--LKHGKQVHG-FLIRTNFRSNTIVMSSLIDMYSKCGCLND 370
            P +      L +  S++   +KHG+      L     + + +  ++++D Y+K G ++ 
Sbjct: 248 -PEKD-----LISWNSLIDGYVKHGRMEDAKSLFNKMPKRDVVTWATMVDGYAKLGFVHQ 301

Query: 371 GRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSS-VKPDKITLAVILNAC 429
            + +FD    ++  + +N+MI+   Q+ Y ++AI +F+DM + S + PD+ TL ++L+A 
Sbjct: 302 AKSLFDRMPLRD-VVAYNSMITGYVQNRYHKEAIGIFNDMEKESHLSPDETTLVIVLSAI 360

Query: 430 THSGLVQEGLT---YFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHD 486
              G + + +    Y       LG     +    LI+  ++ G   + M   E++  +  
Sbjct: 361 AQLGRLSKAVDIHLYIMDNKFRLG----GKLGVALIDTYSKCGSIQKSMRVFEEIENKSI 416

Query: 487 SYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQS 520
            + WNA+ G   IHG   +G    D L+    +S
Sbjct: 417 DH-WNAMIGGLAIHG---LGESAFDMLLQIEKRS 446



 Score = 87.0 bits (214), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 62/207 (29%), Positives = 101/207 (48%), Gaps = 23/207 (11%)

Query: 206 QVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLG 265
           ++H +++  GF+ N  +++ IV  +A      D+RR +    AR V     + S     G
Sbjct: 32  KIHARLITNGFIKNPNLTTRIVLDFA------DSRRSYLAEFARFVFHEYHVCSN----G 81

Query: 266 DMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLC 325
           D E            +P  W  +I  ++     +KAL LF  M+   +  ++ + S  L 
Sbjct: 82  DFE------------DPFLWNAVIKSHSHGLDPRKALLLFCLMLETGVSVDKFSLSLVLK 129

Query: 326 ACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSM 385
           AC+ +  +K G Q+HGFL +T   S+  + + LI +Y KCGCL   RQVFD    + +S+
Sbjct: 130 ACSRLGFVKEGMQIHGFLRKTGIWSDLYLQNCLIGLYIKCGCLGYARQVFDRMP-RRDSV 188

Query: 386 LWNTMISALTQHGYDEQAIRLFHDMVR 412
            +N+MI    + G  E A  LF  M +
Sbjct: 189 SYNSMIDGYVKCGMIESARGLFDLMPK 215


>gi|357125908|ref|XP_003564631.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g41080-like [Brachypodium distachyon]
          Length = 647

 Score =  305 bits (780), Expect = 6e-80,   Method: Compositional matrix adjust.
 Identities = 170/572 (29%), Positives = 293/572 (51%), Gaps = 41/572 (7%)

Query: 24  FLSLISKGQLSEAISSLDLLAQRGIRLP-AETLAFILQQCAESKSLKLGKRVHLHLKLTQ 82
           F+ L S G+L +A+        RG+    A   + I + C   +++ L +++H     + 
Sbjct: 20  FIRLCSSGRLKDALHH----PFRGVLWSDASLFSHIFRAC---RAIPLLRQLHAFAATSG 72

Query: 83  RKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLF 142
                 F +N+L+  Y   G    AR +F+ I  +N+ S+N ++ G    G +  AR LF
Sbjct: 73  AAA-DRFTTNNLLLAYADLGDLPTARHLFEGISKRNVMSWNILIGGCIKNGDLGSARELF 131

Query: 143 DNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELK 202
           D M  R+V +WN M+ G    G  E+ L+F+  +RR  +  +EF    +   C  L ++ 
Sbjct: 132 DKMPTRNVATWNAMVAGLTNVGLDEDSLQFFLAMRREGMHPDEFGLGSVFRCCAGLLDVV 191

Query: 203 LTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYA 262
             RQVH  V+ +G  S++ + +S+   Y +CG L++                        
Sbjct: 192 SGRQVHAYVVRSGMDSDMCVGNSLAHMYMRCGCLAEG----------------------- 228

Query: 263 KLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSS 322
                     +   +P    VS+ T IAG T+NG  + ALE F+ M  + + P+  TF S
Sbjct: 229 --------EAVLRALPSLTIVSFNTTIAGRTQNGDSEGALEYFSMMRGVEVAPDVVTFVS 280

Query: 323 CLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKE 382
            +  C+ + +L  G+QVH  +I+        V++SL+ MYS+CGCL D  +V+D     +
Sbjct: 281 AISCCSDLAALAQGQQVHAQVIKAGVDKVVPVITSLVHMYSRCGCLGDSERVYDGYCGLD 340

Query: 383 NSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYF 442
             +L + MISA   HG   +A+ LF  M+    +P+++T   +L AC+HSGL  EGL +F
Sbjct: 341 LFLL-SAMISACGFHGQGHKAVELFKQMMNGGAEPNEVTFLALLYACSHSGLKDEGLEFF 399

Query: 443 ESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGN 502
           E MT   G  P+ +H+ C+++LL ++GC D+    +  MP   D  +W  L   C+   N
Sbjct: 400 ELMTKTYGFQPSVKHYNCIVDLLGRSGCLDEAEALILSMPVRADGVIWKTLLSACKTQKN 459

Query: 503 IDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIE 562
            DM  ++ +++I+ +P+ SA + LLS+I +   +   V +VR+++ E+  +KE  +SW+E
Sbjct: 460 FDMAERIAERVIESDPRDSAPYVLLSNIRATSKRWGDVTEVRKIMREKDIRKEPGVSWVE 519

Query: 563 IENKVHAFSVSDSLHPMRDVLYSVLEQLAGQM 594
            + +VH F   D  HP +  +   L+++ G++
Sbjct: 520 HKGQVHQFCTGDKSHPRQGEIDEYLKEMMGKI 551


>gi|297828249|ref|XP_002882007.1| hypothetical protein ARALYDRAFT_483672 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297327846|gb|EFH58266.1| hypothetical protein ARALYDRAFT_483672 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 606

 Score =  305 bits (780), Expect = 6e-80,   Method: Compositional matrix adjust.
 Identities = 176/534 (32%), Positives = 287/534 (53%), Gaps = 43/534 (8%)

Query: 42  LLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKC 101
           L+ + G+ +   +L+ +L+ C+    +K G ++H  L+ T   +   FL N LI +Y KC
Sbjct: 104 LMLENGVSVDKFSLSLVLKACSRLGFVKGGMQIHGFLRKTGLWS-DLFLQNCLIGLYLKC 162

Query: 102 GSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAE--RDVVSWNTMIIG 159
           G    AR++FD++P ++  SYN+M++GY   G+++ AR LFD M    ++++SWN+MI G
Sbjct: 163 GCLGFARQMFDRMPQRDSVSYNSMINGYVKCGLIESARELFDLMPREMKNLISWNSMISG 222

Query: 160 YAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSN 219
           YA++    EG+                               KL  ++  + L++     
Sbjct: 223 YAQT---SEGVNIAS---------------------------KLFAEMPEKDLISW---- 248

Query: 220 VVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPE 279
               +S++D Y K G + DA+ LFD    RDV+T  TM+ GYAKLG +  A  LF++MP 
Sbjct: 249 ----NSMIDGYVKHGRIEDAKGLFDVMPRRDVVTCATMIDGYAKLGFVHQAKTLFDQMPL 304

Query: 280 KNPVSWTTLIAGYTRNGLGQKALELFTRM-MILRIRPNQHTFSSCLCACASIVSLKHGKQ 338
           ++ V++ +++AGY +N    +ALE+F  M     + P++ T    L A A +  L     
Sbjct: 305 RDVVAYNSMMAGYVQNKCHMEALEIFNDMEKESHLSPDETTLVIILSAIAQLGRLSKATD 364

Query: 339 VHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHG 398
           +H +++   F     +  +LIDMYSKCG +     VF+  +NK     WN MI  L  HG
Sbjct: 365 MHLYIVEKQFYLGGKLGVALIDMYSKCGSIQHAMLVFEGIENKSIDH-WNAMIGGLAVHG 423

Query: 399 YDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHH 458
             E A  +   + R S+ PD IT   +LNAC+HSGLV+EGL  FE M     I P  +H+
Sbjct: 424 LGESAFNMLLQIERLSIIPDDITFVGVLNACSHSGLVKEGLLCFELMRRKHKIEPRLQHY 483

Query: 459 ACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNP 518
            C++++L+++G  +   N +E+MP E +  +W      C  H   + G  V   LI Q  
Sbjct: 484 GCMVDILSRSGSIELAKNLIEEMPIEPNDVIWRTFLTACSHHKEFETGELVAKHLILQAG 543

Query: 519 QSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSV 572
            + +++ LLS++Y++ G  + V +VR ++ ER+ +K    SWIE++ +VH F V
Sbjct: 544 YNPSSYVLLSNMYASFGMWKDVRRVRTMMKERKIEKIPGCSWIELDGRVHEFFV 597



 Score =  132 bits (333), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 98/366 (26%), Positives = 185/366 (50%), Gaps = 31/366 (8%)

Query: 148 RDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQV 207
            D   WN +I  ++      + L  + ++    +S ++FS + +L  C +L  +K   Q+
Sbjct: 77  EDPFLWNAVIKSHSHGKDPRQALLLFCLMLENGVSVDKFSLSLVLKACSRLGFVKGGMQI 136

Query: 208 HGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDM 267
           HG +  TG  S++ + + ++  Y KCG L  AR++FD    RD +++ +M++GY K G +
Sbjct: 137 HGFLRKTGLWSDLFLQNCLIGLYLKCGCLGFARQMFDRMPQRDSVSYNSMINGYVKCGLI 196

Query: 268 ESASKLFNEMPE--KNPVSWTTLIAGYTRNGLGQK-ALELFTRMMILRIRPNQHTFSSCL 324
           ESA +LF+ MP   KN +SW ++I+GY +   G   A +LF  M      P +      L
Sbjct: 197 ESARELFDLMPREMKNLISWNSMISGYAQTSEGVNIASKLFAEM------PEKD-----L 245

Query: 325 CACASIVS--LKHGK-QVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNK 381
            +  S++   +KHG+ +    L     R + +  +++ID Y+K G ++  + +FD    +
Sbjct: 246 ISWNSMIDGYVKHGRIEDAKGLFDVMPRRDVVTCATMIDGYAKLGFVHQAKTLFDQMPLR 305

Query: 382 ENSMLWNTMISALTQHGYDEQAIRLFHDMVRSS-VKPDKITLAVILNACTHSGLVQEGLT 440
           +  + +N+M++   Q+    +A+ +F+DM + S + PD+ TL +IL+A    G +     
Sbjct: 306 D-VVAYNSMMAGYVQNKCHMEALEIFNDMEKESHLSPDETTLVIILSAIAQLGRLS---- 360

Query: 441 YFESMTHDLGIIPNQEH-----HACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHG 495
             ++    L I+  Q +        LI++ ++ G     M   E +  +   + WNA+ G
Sbjct: 361 --KATDMHLYIVEKQFYLGGKLGVALIDMYSKCGSIQHAMLVFEGIENKSIDH-WNAMIG 417

Query: 496 VCRIHG 501
              +HG
Sbjct: 418 GLAVHG 423



 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 62/207 (29%), Positives = 103/207 (49%), Gaps = 21/207 (10%)

Query: 206 QVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLG 265
           ++HG ++ TG + N  +++ IV A+A       +RR +    AR V     + S     G
Sbjct: 23  KIHGGLIKTGIIKNSNLTTRIVLAFAA------SRRPYLAEFARCVFHEYHVCS--FSPG 74

Query: 266 DMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLC 325
           +ME            +P  W  +I  ++     ++AL LF  M+   +  ++ + S  L 
Sbjct: 75  EME------------DPFLWNAVIKSHSHGKDPRQALLLFCLMLENGVSVDKFSLSLVLK 122

Query: 326 ACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSM 385
           AC+ +  +K G Q+HGFL +T   S+  + + LI +Y KCGCL   RQ+FD    ++ S+
Sbjct: 123 ACSRLGFVKGGMQIHGFLRKTGLWSDLFLQNCLIGLYLKCGCLGFARQMFDRMPQRD-SV 181

Query: 386 LWNTMISALTQHGYDEQAIRLFHDMVR 412
            +N+MI+   + G  E A  LF  M R
Sbjct: 182 SYNSMINGYVKCGLIESARELFDLMPR 208



 Score = 56.2 bits (134), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 64/263 (24%), Positives = 119/263 (45%), Gaps = 25/263 (9%)

Query: 338 QVHGFLIRTNFRSNTIVMSSLIDMYSK---------CGCLNDGRQVFDLTDNK-ENSMLW 387
           ++HG LI+T    N+ + + ++  ++            C+     V   +  + E+  LW
Sbjct: 23  KIHGGLIKTGIIKNSNLTTRIVLAFAASRRPYLAEFARCVFHEYHVCSFSPGEMEDPFLW 82

Query: 388 NTMISALTQHGYD-EQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMT 446
           N +I + + HG D  QA+ LF  M+ + V  DK +L+++L AC+  G V+ G+       
Sbjct: 83  NAVIKSHS-HGKDPRQALLLFCLMLENGVSVDKFSLSLVLKACSRLGFVKGGMQ-IHGFL 140

Query: 447 HDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMG 506
              G+  +     CLI L  + GC        ++MP + DS  +N++       G I+  
Sbjct: 141 RKTGLWSDLFLQNCLIGLYLKCGCLGFARQMFDRMP-QRDSVSYNSMINGYVKCGLIESA 199

Query: 507 RKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIE-IEN 565
           R++ D L+ +  ++  +   + S Y+   +G  V    +L  E    ++  ISW   I+ 
Sbjct: 200 RELFD-LMPREMKNLISWNSMISGYAQTSEG--VNIASKLFAE--MPEKDLISWNSMIDG 254

Query: 566 KVHAFSVSDS-----LHPMRDVL 583
            V    + D+     + P RDV+
Sbjct: 255 YVKHGRIEDAKGLFDVMPRRDVV 277


>gi|357112521|ref|XP_003558057.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Brachypodium distachyon]
          Length = 656

 Score =  305 bits (780), Expect = 7e-80,   Method: Compositional matrix adjust.
 Identities = 166/541 (30%), Positives = 282/541 (52%), Gaps = 38/541 (7%)

Query: 50  LPAE----TLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDV 105
           LPA     T   +   CA  K +  G++VH H  ++       +L N LI MY  CG   
Sbjct: 97  LPAPPDSYTHPILAAACASRKDVIEGRQVHAH-AVSHGFGDNLYLRNALIFMYSACGCLW 155

Query: 106 DARKVFDKIPVKNLFSYNNMLSGYANLG-------------------------------M 134
           DAR+VFD  PV +  S+N +L+ Y + G                               M
Sbjct: 156 DARRVFDAGPVWDAVSWNTILAAYVHAGDVDQAVEVFAQMPKRNATAVSSMVSLFGRRGM 215

Query: 135 MKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTI 194
           +  AR +FD    RD+ +W  MI  + ++    E L  +  +RR     +E     +++ 
Sbjct: 216 VDEARRVFDAAECRDIFTWTAMISCFERNDMFAEALHVFSCMRRERWHVDEPLMVSVVSA 275

Query: 195 CVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTW 254
           C + E ++  +  HG V+  G  S V + ++++  Y+ C ++  ARRLFD  +  D  +W
Sbjct: 276 CAQSEVIQNGQMCHGLVIRAGLCSQVNVQNALIHMYSSCLDVFAARRLFDSGECLDQYSW 335

Query: 255 TTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIR 314
            +M++GY K G ++ A  LF+ MP K+ VSW+T+I+G  +N     AL +F  M    IR
Sbjct: 336 NSMIAGYLKNGHVKDAMALFSAMPNKDNVSWSTVISGCVQNNQSSDALTVFDNMQAQGIR 395

Query: 315 PNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQV 374
           P++ T  S + AC ++ +L+ GK VH ++ +  +  + ++ +SLI+MY KCGCL    + 
Sbjct: 396 PDEVTIVSVISACTNLSALEKGKSVHEYIKQNQYYVSLVLGTSLINMYMKCGCLEAALEA 455

Query: 375 FDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRS-SVKPDKITLAVILNACTHSG 433
           F++ + K  +  WN +I  L  +G   +++ +F +M  S +  P++IT   +L+AC H+G
Sbjct: 456 FNIMEEK-GTPCWNAVIVGLAMNGLVMKSLDMFSEMEASDTATPNEITFTGVLSACRHAG 514

Query: 434 LVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNAL 493
           LV EG  +F+ M H   I+PN  H+ C+++LL +AG   +  + ++ MP   D   W AL
Sbjct: 515 LVDEGRHFFKLMQHRYQIVPNIRHYGCMVDLLGRAGYVKEAEDMIQSMPMSPDVPAWGAL 574

Query: 494 HGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFK 553
            G C  HG  ++G +V  +L++++P       +LS+IY+  G  + V+ +R  + +R  +
Sbjct: 575 LGACWKHGEYEVGERVGRKLVNRDPLHDGFQTMLSNIYAKEGMWQSVDDLRGSMKQRHVQ 634

Query: 554 K 554
           K
Sbjct: 635 K 635



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 84/385 (21%), Positives = 160/385 (41%), Gaps = 42/385 (10%)

Query: 33  LSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSN 92
            +EA+     + +    +    +  ++  CA+S+ ++ G+  H  L +         + N
Sbjct: 247 FAEALHVFSCMRRERWHVDEPLMVSVVSACAQSEVIQNGQMCH-GLVIRAGLCSQVNVQN 305

Query: 93  HLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVS 152
            LI MY  C     AR++FD     + +S+N+M++GY   G +K A  LF  M  +D VS
Sbjct: 306 ALIHMYSSCLDVFAARRLFDSGECLDQYSWNSMIAGYLKNGHVKDAMALFSAMPNKDNVS 365

Query: 153 WNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVL 212
           W+T+I G  ++    + L  +  ++   I  +E +   +++ C  L  L+  + VH  + 
Sbjct: 366 WSTVISGCVQNNQSSDALTVFDNMQAQGIRPDEVTIVSVISACTNLSALEKGKSVHEYIK 425

Query: 213 VTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASK 272
              +  ++V+ +S+++ Y KCG L  A   F+  + +    W  ++ G A          
Sbjct: 426 QNQYYVSLVLGTSLINMYMKCGCLEAALEAFNIMEEKGTPCWNAVIVGLAM--------- 476

Query: 273 LFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMIL-RIRPNQHTFSSCLCACASIV 331
                                 NGL  K+L++F+ M       PN+ TF+  L AC    
Sbjct: 477 ----------------------NGLVMKSLDMFSEMEASDTATPNEITFTGVLSACRHAG 514

Query: 332 SLKHGKQV-----HGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSML 386
            +  G+       H + I  N R        ++D+  + G + +   +        +   
Sbjct: 515 LVDEGRHFFKLMQHRYQIVPNIRH----YGCMVDLLGRAGYVKEAEDMIQSMPMSPDVPA 570

Query: 387 WNTMISALTQHGYDEQAIRLFHDMV 411
           W  ++ A  +HG  E   R+   +V
Sbjct: 571 WGALLGACWKHGEYEVGERVGRKLV 595



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 63/239 (26%), Positives = 102/239 (42%), Gaps = 35/239 (14%)

Query: 206 QVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLG 265
           Q+H Q + +G L+         DA+A       A RL   T A  +L             
Sbjct: 22  QIHAQFIASGLLA---------DAFA-------ASRLLLFTSASRLLPLP---------- 55

Query: 266 DMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLC 325
               + +L   +   N  S  TL+      G+    L L+     L   P+ +T      
Sbjct: 56  -FHHSLRLLRLVRYPNAFSCNTLLKSALIGGMPHLCLPLYAS---LPAPPDSYTHPILAA 111

Query: 326 ACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSM 385
           ACAS   +  G+QVH   +   F  N  + ++LI MYS CGCL D R+VFD      +++
Sbjct: 112 ACASRKDVIEGRQVHAHAVSHGFGDNLYLRNALIFMYSACGCLWDARRVFD-AGPVWDAV 170

Query: 386 LWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFES 444
            WNT+++A    G  +QA+ +F  M     K +   ++ +++     G+V E    F++
Sbjct: 171 SWNTILAAYVHAGDVDQAVEVFAQM----PKRNATAVSSMVSLFGRRGMVDEARRVFDA 225



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 65/263 (24%), Positives = 121/263 (46%), Gaps = 13/263 (4%)

Query: 28  ISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPT 87
           +   Q S+A++  D +  +GIR    T+  ++  C    +L+ GK VH ++K  Q    +
Sbjct: 374 VQNNQSSDALTVFDNMQAQGIRPDEVTIVSVISACTNLSALEKGKSVHEYIKQNQYYV-S 432

Query: 88  TFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAE 147
             L   LI+MY KCG    A + F+ +  K    +N ++ G A  G++  + ++F  M  
Sbjct: 433 LVLGTSLINMYMKCGCLEAALEAFNIMEEKGTPCWNAVIVGLAMNGLVMKSLDMFSEMEA 492

Query: 148 RDVVSWN----TMIIGYAK-SGAVEEGLKFYKVLR-RFSISCNEFSFAGILTICVKLEEL 201
            D  + N    T ++   + +G V+EG  F+K+++ R+ I  N   +  ++ +   L   
Sbjct: 493 SDTATPNEITFTGVLSACRHAGLVDEGRHFFKLMQHRYQIVPNIRHYGCMVDL---LGRA 549

Query: 202 KLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVL--TWTTMVS 259
              ++    +       +V    +++ A  K GE     R+  +   RD L   + TM+S
Sbjct: 550 GYVKEAEDMIQSMPMSPDVPAWGALLGACWKHGEYEVGERVGRKLVNRDPLHDGFQTMLS 609

Query: 260 G-YAKLGDMESASKLFNEMPEKN 281
             YAK G  +S   L   M +++
Sbjct: 610 NIYAKEGMWQSVDDLRGSMKQRH 632


>gi|356524477|ref|XP_003530855.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g06145-like [Glycine max]
          Length = 529

 Score =  305 bits (780), Expect = 7e-80,   Method: Compositional matrix adjust.
 Identities = 162/510 (31%), Positives = 273/510 (53%), Gaps = 33/510 (6%)

Query: 117 KNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVL 176
           ++ F  N  +S  +NL  +  A + F N+   +V+ +N +I G       E+ L  Y  +
Sbjct: 8   QDCFLVNQFISACSNLSCINLAASAFANVQNPNVLVFNALIRGCVHCCYSEQALVHYMHM 67

Query: 177 RRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGEL 236
            R ++    +SF+ ++  C  L +      VHG V   GF S+V + +++++ Y+  G++
Sbjct: 68  LRNNVMPTSYSFSSLIKACTLLVDSAFGEAVHGHVWKHGFDSHVFVQTTLIEFYSTFGDV 127

Query: 237 SDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNP-------------- 282
             +RR+FD+   RDV  WTTM+S + + GDM SA +LF+EMPEKN               
Sbjct: 128 GGSRRVFDDMPERDVFAWTTMISAHVRDGDMASAGRLFDEMPEKNVATWNAMIDGYGKLG 187

Query: 283 -----------------VSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLC 325
                            +SWTT++  Y+RN   ++ + LF  ++   + P++ T ++ + 
Sbjct: 188 NAESAEFLFNQMPARDIISWTTMMNCYSRNKRYKEVIALFHDVIDKGMIPDEVTMTTVIS 247

Query: 326 ACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSM 385
           ACA + +L  GK+VH +L+   F  +  + SSLIDMY+KCG ++    VF     K N  
Sbjct: 248 ACAHLGALALGKEVHLYLVLQGFDLDVYIGSSLIDMYAKCGSIDMALLVFYKLQTK-NLF 306

Query: 386 LWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESM 445
            WN +I  L  HGY E+A+R+F +M R  ++P+ +T   IL ACTH+G ++EG  +F SM
Sbjct: 307 CWNCIIDGLATHGYVEEALRMFGEMERKRIRPNAVTFISILTACTHAGFIEEGRRWFMSM 366

Query: 446 THDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDM 505
             D  I P  EH+ C+++LL++AG  +  +  +  M  E +S++W AL   C++H N+++
Sbjct: 367 VQDYCIAPQVEHYGCMVDLLSKAGLLEDALEMIRNMTVEPNSFIWGALLNGCKLHKNLEI 426

Query: 506 GRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKE-QAISWIEIE 564
               V  L+   P +S  + LL ++Y+   +   V K+R  + +   +K     SW+EI 
Sbjct: 427 AHIAVQNLMVLEPSNSGHYSLLVNMYAEENRWNEVAKIRTTMKDLGVEKRCPGSSWVEIN 486

Query: 565 NKVHAFSVSDSLHPMRDVLYSVLEQLAGQM 594
             VH F+ SD+ HP    L+ +L +L  Q+
Sbjct: 487 KTVHLFAASDTYHPSYSQLHLLLAELDDQL 516



 Score =  129 bits (325), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 92/373 (24%), Positives = 157/373 (42%), Gaps = 66/373 (17%)

Query: 58  ILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVK 117
           +++ C        G+ VH H+          F+   LI  Y   G    +R+VFD +P +
Sbjct: 82  LIKACTLLVDSAFGEAVHGHV-WKHGFDSHVFVQTTLIEFYSTFGDVGGSRRVFDDMPER 140

Query: 118 NLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEG-------- 169
           ++F++  M+S +   G M  A  LFD M E++V +WN MI GY K G  E          
Sbjct: 141 DVFAWTTMISAHVRDGDMASAGRLFDEMPEKNVATWNAMIDGYGKLGNAESAEFLFNQMP 200

Query: 170 ------------------------LKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTR 205
                                     F+ V+ +  I  +E +   +++ C  L  L L +
Sbjct: 201 ARDIISWTTMMNCYSRNKRYKEVIALFHDVIDKGMIP-DEVTMTTVISACAHLGALALGK 259

Query: 206 QVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLG 265
           +VH  +++ GF  +V I SS++D YAKCG +  A  +F +   +++  W  ++ G A  G
Sbjct: 260 EVHLYLVLQGFDLDVYIGSSLIDMYAKCGSIDMALLVFYKLQTKNLFCWNCIIDGLATHG 319

Query: 266 DMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLC 325
            +E A ++F EM  K                               RIRPN  TF S L 
Sbjct: 320 YVEEALRMFGEMERK-------------------------------RIRPNAVTFISILT 348

Query: 326 ACASIVSLKHGKQVHGFLIRTNFRSNTIV-MSSLIDMYSKCGCLNDGRQVFDLTDNKENS 384
           AC     ++ G++    +++    +  +     ++D+ SK G L D  ++      + NS
Sbjct: 349 ACTHAGFIEEGRRWFMSMVQDYCIAPQVEHYGCMVDLLSKAGLLEDALEMIRNMTVEPNS 408

Query: 385 MLWNTMISALTQH 397
            +W  +++    H
Sbjct: 409 FIWGALLNGCKLH 421



 Score = 71.2 bits (173), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 44/143 (30%), Positives = 75/143 (52%), Gaps = 5/143 (3%)

Query: 35  EAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHL 94
           E I+    +  +G+     T+  ++  CA   +L LGK VHL+L L Q      ++ + L
Sbjct: 222 EVIALFHDVIDKGMIPDEVTMTTVISACAHLGALALGKEVHLYLVL-QGFDLDVYIGSSL 280

Query: 95  ISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAER----DV 150
           I MY KCGS   A  VF K+  KNLF +N ++ G A  G ++ A  +F  M  +    + 
Sbjct: 281 IDMYAKCGSIDMALLVFYKLQTKNLFCWNCIIDGLATHGYVEEALRMFGEMERKRIRPNA 340

Query: 151 VSWNTMIIGYAKSGAVEEGLKFY 173
           V++ +++     +G +EEG +++
Sbjct: 341 VTFISILTACTHAGFIEEGRRWF 363



 Score = 47.4 bits (111), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 53/227 (23%), Positives = 88/227 (38%), Gaps = 19/227 (8%)

Query: 343 LIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQ 402
           +I+TN   +  +++  I   S   C+N     F    N  N +++N +I       Y EQ
Sbjct: 1   MIKTNTTQDCFLVNQFISACSNLSCINLAASAFANVQNP-NVLVFNALIRGCVHCCYSEQ 59

Query: 403 AIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHA--- 459
           A+  +  M+R++V P   + + ++ ACT   LV      F    H        + H    
Sbjct: 60  ALVHYMHMLRNNVMPTSYSFSSLIKACTL--LVDSA---FGEAVHGHVWKHGFDSHVFVQ 114

Query: 460 -CLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNP 518
             LIE  +  G         + MP E D + W  +       G++    ++ D++ ++N 
Sbjct: 115 TTLIEFYSTFGDVGGSRRVFDDMP-ERDVFAWTTMISAHVRDGDMASAGRLFDEMPEKN- 172

Query: 519 QSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIEN 565
              AT   +   Y  LG     E    L N  Q      ISW  + N
Sbjct: 173 --VATWNAMIDGYGKLGNA---ESAEFLFN--QMPARDIISWTTMMN 212


>gi|359476777|ref|XP_002278837.2| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At3g23330 [Vitis vinifera]
          Length = 1008

 Score =  304 bits (779), Expect = 7e-80,   Method: Compositional matrix adjust.
 Identities = 172/565 (30%), Positives = 293/565 (51%), Gaps = 49/565 (8%)

Query: 54  TLAFILQQCAES-KSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFD 112
           TL+ +L+ C+ +    ++GK +H  + L         L+N ++  Y KC     A K+F 
Sbjct: 389 TLSIVLKSCSSNVNDSRIGKGIHGWI-LRNGLDLDAVLNNSILDYYVKCRCFGYAEKLFG 447

Query: 113 KIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKF 172
            +  K+  S+N M+S Y  +G M+ + +LF  +  +D  SWNTMI G  ++G     L+ 
Sbjct: 448 LMAEKDTVSWNIMMSSYLQIGDMQKSVDLFRQLPGKDAASWNTMIDGLMRNGCERVALEL 507

Query: 173 YKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAK 232
              +     + N+ +F+  L +   L  L L +Q+H QVL  G L +  + +S++D Y K
Sbjct: 508 LYKMVAAGPAFNKLTFSIALVLASSLSVLGLGKQIHTQVLKVGVLDDGFVRNSLIDMYCK 567

Query: 233 CGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNP---------- 282
           CGE                               ME AS +F  +P+++           
Sbjct: 568 CGE-------------------------------MEKASVIFKHLPQESSMMNSEESCDD 596

Query: 283 -----VSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGK 337
                VSW+++++GY +NG  + AL+ F+ M+  ++  ++ T +S + ACAS   L+ G+
Sbjct: 597 AVVESVSWSSMVSGYVQNGRFEDALKTFSFMICSQVEVDKFTLTSVVSACASAGVLELGR 656

Query: 338 QVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQH 397
           QVHG++ +     +  + SS+IDMY KCG LND   +F+   ++ N +LW +MIS    H
Sbjct: 657 QVHGYIQKIGHGLDVFLGSSIIDMYVKCGSLNDAWLIFNQAKDR-NVVLWTSMISGCALH 715

Query: 398 GYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEH 457
           G   +A+RLF  M+   + P++++   +L AC+H+GL++EG  YF  M    GI P  EH
Sbjct: 716 GQGREAVRLFELMINEGITPNEVSFVGVLTACSHAGLLEEGCKYFRLMREVYGIRPGAEH 775

Query: 458 HACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQN 517
             C+++L  +AG  +++   +        S +W +    CR+H NI+MG  V  +L++  
Sbjct: 776 FTCMVDLYGRAGRLNEIKEFIHNNAISKLSSVWRSFLSSCRVHKNIEMGIWVCKKLLELE 835

Query: 518 PQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLH 577
           P  +  + L SSI +   +     K+R L+ +R  KK  + SWI+++N+VH+F + D  H
Sbjct: 836 PFDAGPYILFSSICATEHRWEEAAKIRSLMQQRGVKKNPSQSWIQLKNQVHSFVMGDRSH 895

Query: 578 PMRDVLYSVLEQLAGQMGEDAPSLD 602
           P    +YS L++L G++ E   S D
Sbjct: 896 PQDTKIYSYLDELIGRLKEIGYSTD 920



 Score =  189 bits (479), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 126/477 (26%), Positives = 233/477 (48%), Gaps = 63/477 (13%)

Query: 76  LHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMM 135
           LH KL +         NHL+++Y K  +   A K+F++IP  ++FS+  ++SG+A +G+ 
Sbjct: 310 LHAKLIKNGC-VGIRGNHLLNLYAKSQNLEQAHKMFEEIPQTDVFSWTVLISGFARIGLS 368

Query: 136 KHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTIC 195
                LF  M ++ V                                 N+F+ + +L  C
Sbjct: 369 ADVLGLFTKMQDQGVCP-------------------------------NQFTLSIVLKSC 397

Query: 196 VK-LEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTW 254
              + + ++ + +HG +L  G   + V+++SI+D Y KC     A +LF     +D ++W
Sbjct: 398 SSNVNDSRIGKGIHGWILRNGLDLDAVLNNSILDYYVKCRCFGYAEKLFGLMAEKDTVSW 457

Query: 255 TTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIR 314
             M+S Y ++GDM+ +  LF ++P K+  SW T+I G  RNG  + ALEL  +M+     
Sbjct: 458 NIMMSSYLQIGDMQKSVDLFRQLPGKDAASWNTMIDGLMRNGCERVALELLYKMVAAGPA 517

Query: 315 PNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQV 374
            N+ TFS  L   +S+  L  GKQ+H  +++     +  V +SLIDMY KCG +     +
Sbjct: 518 FNKLTFSIALVLASSLSVLGLGKQIHTQVLKVGVLDDGFVRNSLIDMYCKCGEMEKASVI 577

Query: 375 F-------DLTDNKEN-------SMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKI 420
           F        + +++E+       S+ W++M+S   Q+G  E A++ F  M+ S V+ DK 
Sbjct: 578 FKHLPQESSMMNSEESCDDAVVESVSWSSMVSGYVQNGRFEDALKTFSFMICSQVEVDKF 637

Query: 421 TLAVILNACTHSGLVQEGLT---YFESMTHDLGIIPNQEHHACLIELLAQAGCSDQ---L 474
           TL  +++AC  +G+++ G     Y + + H L +         +I++  + G  +    +
Sbjct: 638 TLTSVVSACASAGVLELGRQVHGYIQKIGHGLDVFLGSS----IIDMYVKCGSLNDAWLI 693

Query: 475 MNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQN--PQSSATHGLLSS 529
            NQ +    + +  LW ++   C +HG      ++ + +I++   P   +  G+L++
Sbjct: 694 FNQAK----DRNVVLWTSMISGCALHGQGREAVRLFELMINEGITPNEVSFVGVLTA 746



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 41/154 (26%), Positives = 82/154 (53%), Gaps = 5/154 (3%)

Query: 28  ISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPT 87
           +  G+  +A+ +   +    + +   TL  ++  CA +  L+LG++VH +++        
Sbjct: 612 VQNGRFEDALKTFSFMICSQVEVDKFTLTSVVSACASAGVLELGRQVHGYIQKIGHGLD- 670

Query: 88  TFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAE 147
            FL + +I MY KCGS  DA  +F++   +N+  + +M+SG A  G  + A  LF+ M  
Sbjct: 671 VFLGSSIIDMYVKCGSLNDAWLIFNQAKDRNVVLWTSMISGCALHGQGREAVRLFELMIN 730

Query: 148 RDV----VSWNTMIIGYAKSGAVEEGLKFYKVLR 177
             +    VS+  ++   + +G +EEG K+++++R
Sbjct: 731 EGITPNEVSFVGVLTACSHAGLLEEGCKYFRLMR 764


>gi|224137432|ref|XP_002322556.1| predicted protein [Populus trichocarpa]
 gi|222867186|gb|EEF04317.1| predicted protein [Populus trichocarpa]
          Length = 702

 Score =  304 bits (779), Expect = 7e-80,   Method: Compositional matrix adjust.
 Identities = 162/502 (32%), Positives = 288/502 (57%), Gaps = 11/502 (2%)

Query: 81  TQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARN 140
           TQ+    ++++  ++S + + G+ +++R++FD++P +N+ S+N M+S Y     +  A  
Sbjct: 190 TQKPNVVSWVT--MLSGFARNGNILESRRLFDQMPSRNIVSWNAMISAYVQRCEIDEASR 247

Query: 141 LFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEE 200
           LF+ M ERD VSW TMI GY + G ++E  +    +   +I       +G +  C K++E
Sbjct: 248 LFEEMPERDSVSWTTMINGYVRIGKLDEARELLNEMPYRNIGAQTAMISGYIQ-CNKVDE 306

Query: 201 LKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSG 260
               R+   ++       +VV  ++++  YA  G +++A  L      +D++TW TM+S 
Sbjct: 307 ---ARRFFDEIGTW----DVVCWNAMIAGYAHHGRINEALCLSKRMVNKDMVTWNTMISC 359

Query: 261 YAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTF 320
           YA++G M+ A K+F EM E++ VSW +LIAG+  NG    AL+ F  M     +P+Q +F
Sbjct: 360 YAQVGQMDRAVKIFEEMGERDLVSWNSLIAGFMLNGQNLDALKSFALMGHEGKKPDQLSF 419

Query: 321 SSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDN 380
           +  L +CA+I +L+ G Q+H  +++  + +  +V ++LI MY+KCG + +   VF+   +
Sbjct: 420 ACGLSSCATIAALQVGNQLHQVVVKGGYLNYLVVNNALITMYAKCGRILEAGLVFNGICH 479

Query: 381 KENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLT 440
            +  + WN++I     +GY ++A++LF +M    + PD++T   IL+AC H+G+V  GL 
Sbjct: 480 AD-VISWNSLIGGYAINGYGKEALKLFEEMASEGMAPDEVTFIGILSACNHAGMVDHGLK 538

Query: 441 YFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIH 500
            F+ M+    I P  EH+AC+++LL + G  D+    +  M  +  + +W AL G CR H
Sbjct: 539 LFKCMSKVYAIEPLAEHYACMVDLLGRVGRLDEAFEIVRGMKVKATAGVWGALLGACRAH 598

Query: 501 GNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISW 560
           GN+++GR    +L +  P  ++ + LLS+I++   +   V++VR L+N     KE   SW
Sbjct: 599 GNLELGRLAAHKLSEFEPHKTSNYVLLSNIHAEANRWNEVQEVRMLMNASSTVKEPGCSW 658

Query: 561 IEIENKVHAFSVSDSLHPMRDV 582
           +E+ N+VH F   DS     D+
Sbjct: 659 VEVRNQVHGFLSDDSTRSRPDI 680



 Score =  162 bits (411), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 109/430 (25%), Positives = 215/430 (50%), Gaps = 31/430 (7%)

Query: 12  RKNLPN-NCLIQSFLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKL 70
           R+NL + N ++  +L     G+  EA     ++ +R +     +   ++     +  ++ 
Sbjct: 34  RRNLVSWNTMVSGYLH---NGKFDEAYKLFVIMPRRDLF----SWTLMITCYTRNGEVEK 86

Query: 71  GKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYA 130
            + +   L  + RK    +  N +IS Y K G   +A+++FD++PVKNL S+N+ML+GY 
Sbjct: 87  ARELFDSLPCSYRKGVACW--NAMISGYVKKGRVNEAKRLFDEMPVKNLISWNSMLAGYT 144

Query: 131 NLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAG 190
               M+     F+ M ERDVVSWN M+ G+ + G ++   KF++  ++ ++       +G
Sbjct: 145 QNRKMRLGLEFFNEMDERDVVSWNLMVDGFIQVGDLDSAWKFFQETQKPNVVSWVTMLSG 204

Query: 191 ILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARD 250
                  LE  +L  Q+  +        N+V  ++++ AY +  E+ +A RLF+E   RD
Sbjct: 205 FARNGNILESRRLFDQMPSR--------NIVSWNAMISAYVQRCEIDEASRLFEEMPERD 256

Query: 251 VLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMI 310
            ++WTTM++GY ++G ++ A +L NEMP +N  + T +I+GY +     +A   F  +  
Sbjct: 257 SVSWTTMINGYVRIGKLDEARELLNEMPYRNIGAQTAMISGYIQCNKVDEARRFFDEIGT 316

Query: 311 LRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTN--FRSNTIVMSSLIDMYSKCGCL 368
             +          +C  A I    H  +++  L  +      + +  +++I  Y++ G +
Sbjct: 317 WDV----------VCWNAMIAGYAHHGRINEALCLSKRMVNKDMVTWNTMISCYAQVGQM 366

Query: 369 NDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNA 428
           +   ++F+    ++  + WN++I+    +G +  A++ F  M     KPD+++ A  L++
Sbjct: 367 DRAVKIFEEMGERD-LVSWNSLIAGFMLNGQNLDALKSFALMGHEGKKPDQLSFACGLSS 425

Query: 429 CTHSGLVQEG 438
           C     +Q G
Sbjct: 426 CATIAALQVG 435



 Score =  142 bits (359), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 107/410 (26%), Positives = 192/410 (46%), Gaps = 59/410 (14%)

Query: 117 KNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVL 176
           KN  +YN+M+S YA  G +  ARNLFD M  R++VSWNTM+ GY  +G  +E  K + ++
Sbjct: 4   KNTVTYNSMISVYAKNGRINAARNLFDKMPRRNLVSWNTMVSGYLHNGKFDEAYKLFVIM 63

Query: 177 RRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGEL 236
            R  +    FS+  ++T   +  E++  R++    L   +   V   ++++  Y K G +
Sbjct: 64  PRRDL----FSWTLMITCYTRNGEVEKARELFDS-LPCSYRKGVACWNAMISGYVKKGRV 118

Query: 237 SDARRLFD-------------------------------ETDARDVLTWTTMVSGYAKLG 265
           ++A+RLFD                               E D RDV++W  MV G+ ++G
Sbjct: 119 NEAKRLFDEMPVKNLISWNSMLAGYTQNRKMRLGLEFFNEMDERDVVSWNLMVDGFIQVG 178

Query: 266 DMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQH--TFSSC 323
           D++SA K F E  + N VSW T+++G+ RNG   ++  LF +M      P+++  ++++ 
Sbjct: 179 DLDSAWKFFQETQKPNVVSWVTMLSGFARNGNILESRRLFDQM------PSRNIVSWNAM 232

Query: 324 LCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKEN 383
           + A      +    +    L       +++  +++I+ Y + G L++ R++ +    + N
Sbjct: 233 ISAYVQRCEIDEASR----LFEEMPERDSVSWTTMINGYVRIGKLDEARELLNEMPYR-N 287

Query: 384 SMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFE 443
                 MIS   Q    ++A R F ++       D +    ++    H G + E L   +
Sbjct: 288 IGAQTAMISGYIQCNKVDEARRFFDEI----GTWDVVCWNAMIAGYAHHGRINEALCLSK 343

Query: 444 SMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNAL 493
            M +   +  N      +I   AQ G  D+ +   E+M  E D   WN+L
Sbjct: 344 RMVNKDMVTWNT-----MISCYAQVGQMDRAVKIFEEMG-ERDLVSWNSL 387



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 104/420 (24%), Positives = 184/420 (43%), Gaps = 40/420 (9%)

Query: 145 MAERDVVSWNTMIIGYAKSGAVEEGLKFY-KVLRRFSISCNEFSFAGILTICVKLEELKL 203
           MAE++ V++N+MI  YAK+G +      + K+ RR  +S N    +G L      E  KL
Sbjct: 1   MAEKNTVTYNSMISVYAKNGRINAARNLFDKMPRRNLVSWNTM-VSGYLHNGKFDEAYKL 59

Query: 204 TRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDA---RDVLTWTTMVSG 260
              +  + L +  L        ++  Y + GE+  AR LFD       + V  W  M+SG
Sbjct: 60  FVIMPRRDLFSWTL--------MITCYTRNGEVEKARELFDSLPCSYRKGVACWNAMISG 111

Query: 261 YAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTF 320
           Y K G +  A +LF+EMP KN +SW +++AGYT+N   +  LE F  M       ++   
Sbjct: 112 YVKKGRVNEAKRLFDEMPVKNLISWNSMLAGYTQNRKMRLGLEFFNEM-------DERDV 164

Query: 321 SSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDN 380
            S        + +        F   T  + N +   +++  +++ G + + R++FD   +
Sbjct: 165 VSWNLMVDGFIQVGDLDSAWKFFQETQ-KPNVVSWVTMLSGFARNGNILESRRLFDQMPS 223

Query: 381 KENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLT 440
           + N + WN MISA  Q    ++A RLF +M     + D ++   ++N     G + E   
Sbjct: 224 R-NIVSWNAMISAYVQRCEIDEASRLFEEM----PERDSVSWTTMINGYVRIGKLDEARE 278

Query: 441 YFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIH 500
               M +      N      +I    Q    D+     +++    D   WNA+      H
Sbjct: 279 LLNEMPY-----RNIGAQTAMISGYIQCNKVDEARRFFDEIG-TWDVVCWNAMIAGYAHH 332

Query: 501 GNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISW 560
           G I+    +  ++++++     T   + S Y+ +G+     K+ + + ER       +SW
Sbjct: 333 GRINEALCLSKRMVNKD---MVTWNTMISCYAQVGQMDRAVKIFEEMGERDL-----VSW 384



 Score = 68.9 bits (167), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 49/165 (29%), Positives = 84/165 (50%), Gaps = 8/165 (4%)

Query: 18  NCLIQSFLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLH 77
           N LI  F+     GQ  +A+ S  L+   G +    + A  L  CA   +L++G ++H  
Sbjct: 385 NSLIAGFML---NGQNLDALKSFALMGHEGKKPDQLSFACGLSSCATIAALQVGNQLH-Q 440

Query: 78  LKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKH 137
           + +         ++N LI+MY KCG  ++A  VF+ I   ++ S+N+++ GYA  G  K 
Sbjct: 441 VVVKGGYLNYLVVNNALITMYAKCGRILEAGLVFNGICHADVISWNSLIGGYAINGYGKE 500

Query: 138 ARNLFDNMAER----DVVSWNTMIIGYAKSGAVEEGLKFYKVLRR 178
           A  LF+ MA      D V++  ++     +G V+ GLK +K + +
Sbjct: 501 ALKLFEEMASEGMAPDEVTFIGILSACNHAGMVDHGLKLFKCMSK 545


>gi|9294596|dbj|BAB02877.1| unnamed protein product [Arabidopsis thaliana]
          Length = 695

 Score =  304 bits (779), Expect = 7e-80,   Method: Compositional matrix adjust.
 Identities = 154/476 (32%), Positives = 264/476 (55%), Gaps = 1/476 (0%)

Query: 118 NLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLR 177
           NL+  N ++  Y+  G+M  AR +FD   + DV SWN MI GY +    EE ++    + 
Sbjct: 169 NLYVQNALVKMYSLCGLMDMARGVFDRRCKEDVFSWNLMISGYNRMKEYEESIELLVEME 228

Query: 178 RFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELS 237
           R  +S    +   +L+ C K+++  L ++VH  V       ++ + +++V+AYA CGE+ 
Sbjct: 229 RNLVSPTSVTLLLVLSACSKVKDKDLCKRVHEYVSECKTEPSLRLENALVNAYAACGEMD 288

Query: 238 DARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGL 297
            A R+F    ARDV++WT++V GY + G+++ A   F++MP ++ +SWT +I GY R G 
Sbjct: 289 IAVRIFRSMKARDVISWTSIVKGYVERGNLKLARTYFDQMPVRDRISWTIMIDGYLRAGC 348

Query: 298 GQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSS 357
             ++LE+F  M    + P++ T  S L ACA + SL+ G+ +  ++ +   +++ +V ++
Sbjct: 349 FNESLEIFREMQSAGMIPDEFTMVSVLTACAHLGSLEIGEWIKTYIDKNKIKNDVVVGNA 408

Query: 358 LIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKP 417
           LIDMY KCGC    ++VF   D ++    W  M+  L  +G  ++AI++F  M   S++P
Sbjct: 409 LIDMYFKCGCSEKAQKVFHDMDQRDK-FTWTAMVVGLANNGQGQEAIKVFFQMQDMSIQP 467

Query: 418 DKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQ 477
           D IT   +L+AC HSG+V +   +F  M  D  I P+  H+ C++++L +AG   +    
Sbjct: 468 DDITYLGVLSACNHSGMVDQARKFFAKMRSDHRIEPSLVHYGCMVDMLGRAGLVKEAYEI 527

Query: 478 LEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKG 537
           L KMP   +S +W AL G  R+H +  M      ++++  P + A + LL +IY+   + 
Sbjct: 528 LRKMPMNPNSIVWGALLGASRLHNDEPMAELAAKKILELEPDNGAVYALLCNIYAGCKRW 587

Query: 538 RLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQ 593
           + + +VR+ I +   KK    S IE+    H F   D  H   + +Y  LE+LA +
Sbjct: 588 KDLREVRRKIVDVAIKKTPGFSLIEVNGFAHEFVAGDKSHLQSEEIYMKLEELAQE 643



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 98/378 (25%), Positives = 181/378 (47%), Gaps = 40/378 (10%)

Query: 32  QLSEAISSLDLLAQ--RGIRLPAE-TLAFILQQCAESKSLKLGKRVHLHLKLTQRKT-PT 87
           ++ E   S++LL +  R +  P   TL  +L  C++ K   L KRVH ++  ++ KT P+
Sbjct: 213 RMKEYEESIELLVEMERNLVSPTSVTLLLVLSACSKVKDKDLCKRVHEYV--SECKTEPS 270

Query: 88  TFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAE 147
             L N L++ Y  CG    A ++F  +  +++ S+ +++ GY   G +K AR  FD M  
Sbjct: 271 LRLENALVNAYAACGEMDIAVRIFRSMKARDVISWTSIVKGYVERGNLKLARTYFDQMPV 330

Query: 148 RDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQV 207
           RD +SW  MI GY ++G   E L+ ++ ++   +  +EF+   +LT C  L  L++   +
Sbjct: 331 RDRISWTIMIDGYLRAGCFNESLEIFREMQSAGMIPDEFTMVSVLTACAHLGSLEIGEWI 390

Query: 208 HGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDM 267
              +      ++VV+ ++++D Y KCG    A+++F + D RD  TWT MV G A     
Sbjct: 391 KTYIDKNKIKNDVVVGNALIDMYFKCGCSEKAQKVFHDMDQRDKFTWTAMVVGLAN---- 446

Query: 268 ESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCAC 327
                                      NG GQ+A+++F +M  + I+P+  T+   L AC
Sbjct: 447 ---------------------------NGQGQEAIKVFFQMQDMSIQPDDITYLGVLSAC 479

Query: 328 ASIVSLKHGKQVHGFLIRTNFR--SNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSM 385
                +   ++    + R++ R   + +    ++DM  + G + +  ++        NS+
Sbjct: 480 NHSGMVDQARKFFAKM-RSDHRIEPSLVHYGCMVDMLGRAGLVKEAYEILRKMPMNPNSI 538

Query: 386 LWNTMISALTQHGYDEQA 403
           +W  ++ A   H  +  A
Sbjct: 539 VWGALLGASRLHNDEPMA 556



 Score =  115 bits (287), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 104/430 (24%), Positives = 197/430 (45%), Gaps = 34/430 (7%)

Query: 133 GMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGIL 192
           G + +A  LF  + E DVV WN MI G++K     EG++ Y  + +  ++ +  +F  +L
Sbjct: 82  GHVSYAYKLFVKIPEPDVVVWNNMIKGWSKVDCDGEGVRLYLNMLKEGVTPDSHTFPFLL 141

Query: 193 TICVKLE--ELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARD 250
              +K +   L   +++H  V+  G  SN+ + +++V  Y+ CG +  AR +FD     D
Sbjct: 142 N-GLKRDGGALACGKKLHCHVVKFGLGSNLYVQNALVKMYSLCGLMDMARGVFDRRCKED 200

Query: 251 VLTWTTMVSGYAKLGDMESASKLFNEMPEKN---PVSWTTLIAGYTRNGLGQKAL--ELF 305
           V +W  M+SGY ++ + E + +L  EM E+N   P S T L+     + +  K L   + 
Sbjct: 201 VFSWNLMISGYNRMKEYEESIELLVEM-ERNLVSPTSVTLLLVLSACSKVKDKDLCKRVH 259

Query: 306 TRMMILRIRPN---QHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMY 362
             +   +  P+   ++   +   AC  +        +   + R+    + I  +S++  Y
Sbjct: 260 EYVSECKTEPSLRLENALVNAYAACGEM-------DIAVRIFRSMKARDVISWTSIVKGY 312

Query: 363 SKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITL 422
            + G L   R  FD    ++  + W  MI    + G   +++ +F +M  + + PD+ T+
Sbjct: 313 VERGNLKLARTYFDQMPVRDR-ISWTIMIDGYLRAGCFNESLEIFREMQSAGMIPDEFTM 371

Query: 423 AVILNACTHSGLVQEG---LTYFE--SMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQ 477
             +L AC H G ++ G    TY +   + +D+ ++ N      LI++  + GCS++    
Sbjct: 372 VSVLTACAHLGSLEIGEWIKTYIDKNKIKNDV-VVGN-----ALIDMYFKCGCSEKAQKV 425

Query: 478 LEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKG 537
              M  + D + W A+      +G      KV  Q+ D + Q      L   + SA    
Sbjct: 426 FHDMD-QRDKFTWTAMVVGLANNGQGQEAIKVFFQMQDMSIQPDDITYL--GVLSACNHS 482

Query: 538 RLVEKVRQLI 547
            +V++ R+  
Sbjct: 483 GMVDQARKFF 492



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 70/252 (27%), Positives = 118/252 (46%), Gaps = 34/252 (13%)

Query: 180 SISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDA 239
           SIS +   F  IL +C   ++ K   Q+H Q +  G   N                    
Sbjct: 29  SISNDYSRFISILGVCKTTDQFK---QLHSQSITRGVAPNPTFQ---------------- 69

Query: 240 RRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQ 299
           ++LF        + W + + G+     +  A KLF ++PE + V W  +I G+++     
Sbjct: 70  KKLF--------VFWCSRLGGH-----VSYAYKLFVKIPEPDVVVWNNMIKGWSKVDCDG 116

Query: 300 KALELFTRMMILRIRPNQHTFSSCLCACA-SIVSLKHGKQVHGFLIRTNFRSNTIVMSSL 358
           + + L+  M+   + P+ HTF   L        +L  GK++H  +++    SN  V ++L
Sbjct: 117 EGVRLYLNMLKEGVTPDSHTFPFLLNGLKRDGGALACGKKLHCHVVKFGLGSNLYVQNAL 176

Query: 359 IDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPD 418
           + MYS CG ++  R VFD    KE+   WN MIS   +    E++I L  +M R+ V P 
Sbjct: 177 VKMYSLCGLMDMARGVFD-RRCKEDVFSWNLMISGYNRMKEYEESIELLVEMERNLVSPT 235

Query: 419 KITLAVILNACT 430
            +TL ++L+AC+
Sbjct: 236 SVTLLLVLSACS 247


>gi|224134923|ref|XP_002327523.1| predicted protein [Populus trichocarpa]
 gi|222836077|gb|EEE74498.1| predicted protein [Populus trichocarpa]
          Length = 635

 Score =  304 bits (779), Expect = 7e-80,   Method: Compositional matrix adjust.
 Identities = 155/480 (32%), Positives = 268/480 (55%), Gaps = 18/480 (3%)

Query: 132 LGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGI 191
            G M +AR LFD + E  V SWN M  GY++    + G+  Y  +   ++  + +++  +
Sbjct: 61  FGDMCYARQLFDTIPEPSVFSWNIMFKGYSRIACPKLGVSLYLEMLERNVKPDCYTYPFL 120

Query: 192 LTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDV 251
                +   L+L R++H  V+  G  SNV   +++++ Y+ CG +  AR +FD +   DV
Sbjct: 121 FKGFTRSVALQLGRELHCHVVKYGLDSNVFAHNALINMYSLCGLIDMARGIFDMSCKSDV 180

Query: 252 LTWTTMVSGYAKL-----------------GDMESASKLFNEMPEKNPVSWTTLIAGYTR 294
           +TW  M+SGY ++                 G +++A K F++MPE++ VSWT +I GY R
Sbjct: 181 VTWNAMISGYNRIKKDVISWTAIVTGFVNTGQVDAARKYFHKMPERDHVSWTAMIDGYLR 240

Query: 295 NGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIV 354
               ++AL LF  M   +I+P++ T  S L ACA + +L+ G+ +  ++ +   +++T V
Sbjct: 241 LNCYKEALMLFREMQTSKIKPDEFTMVSVLTACAQLGALELGEWIRTYIDKNKVKNDTFV 300

Query: 355 MSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSS 414
            ++LIDMY KCG +     +F+ T  + +   W  M+  L  +G  E+A+ +F  M+++S
Sbjct: 301 GNALIDMYFKCGNVEMALSIFN-TLPQRDKFTWTAMVVGLAINGCGEEALNMFSQMLKAS 359

Query: 415 VKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQL 474
           V PD++T   +L+ACTH+G+V EG  +F SMT   GI PN  H+ C+++LL +AG   + 
Sbjct: 360 VTPDEVTYVGVLSACTHTGMVDEGKKFFASMTARHGIEPNIAHYGCMVDLLGKAGHLKEA 419

Query: 475 MNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSAL 534
              ++ MP + +S +W AL G CRIH + +M  + ++Q+++  P + A + L  +IY+A 
Sbjct: 420 HEIIKNMPMKPNSIVWGALLGACRIHKDAEMAERAIEQILELEPNNGAVYVLQCNIYAAC 479

Query: 535 GKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQM 594
            K   + ++RQ++ +R  KK    S IE+   VH F   D  HP    +Y  L ++   +
Sbjct: 480 NKWDKLRELRQVMMDRGIKKTPGCSLIEMNGIVHEFVAGDQSHPQTKEIYGKLNKMTSDL 539



 Score =  148 bits (374), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 98/381 (25%), Positives = 164/381 (43%), Gaps = 50/381 (13%)

Query: 43  LAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCG 102
           + +R ++    T  F+ +    S +L+LG+ +H H+ +        F  N LI+MY  CG
Sbjct: 105 MLERNVKPDCYTYPFLFKGFTRSVALQLGRELHCHV-VKYGLDSNVFAHNALINMYSLCG 163

Query: 103 SDVDARKVFDKIPVKNLFSYNNMLSGY-----------------ANLGMMKHARNLFDNM 145
               AR +FD     ++ ++N M+SGY                  N G +  AR  F  M
Sbjct: 164 LIDMARGIFDMSCKSDVVTWNAMISGYNRIKKDVISWTAIVTGFVNTGQVDAARKYFHKM 223

Query: 146 AERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTR 205
            ERD VSW  MI GY +    +E L  ++ ++   I  +EF+   +LT C +L  L+L  
Sbjct: 224 PERDHVSWTAMIDGYLRLNCYKEALMLFREMQTSKIKPDEFTMVSVLTACAQLGALELGE 283

Query: 206 QVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLG 265
            +   +      ++  + ++++D Y KCG +  A  +F+    RD  TWT MV G A   
Sbjct: 284 WIRTYIDKNKVKNDTFVGNALIDMYFKCGNVEMALSIFNTLPQRDKFTWTAMVVGLAI-- 341

Query: 266 DMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLC 325
                                        NG G++AL +F++M+   + P++ T+   L 
Sbjct: 342 -----------------------------NGCGEEALNMFSQMLKASVTPDEVTYVGVLS 372

Query: 326 ACASIVSLKHGKQVHGFLI-RTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENS 384
           AC     +  GK+    +  R     N      ++D+  K G L +  ++      K NS
Sbjct: 373 ACTHTGMVDEGKKFFASMTARHGIEPNIAHYGCMVDLLGKAGHLKEAHEIIKNMPMKPNS 432

Query: 385 MLWNTMISALTQHGYDEQAIR 405
           ++W  ++ A   H   E A R
Sbjct: 433 IVWGALLGACRIHKDAEMAER 453



 Score = 92.8 bits (229), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 71/321 (22%), Positives = 138/321 (42%), Gaps = 61/321 (19%)

Query: 263 KLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSS 322
           + GDM  A +LF+ +PE +  SW  +  GY+R    +  + L+  M+   ++P+ +T+  
Sbjct: 60  EFGDMCYARQLFDTIPEPSVFSWNIMFKGYSRIACPKLGVSLYLEMLERNVKPDCYTYPF 119

Query: 323 CLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKE 382
                   V+L+ G+++H  +++    SN    ++LI+MYS CG ++  R +FD++  K 
Sbjct: 120 LFKGFTRSVALQLGRELHCHVVKYGLDSNVFAHNALINMYSLCGLIDMARGIFDMS-CKS 178

Query: 383 NSMLWNTMISALTQHGYD------------------------------------------ 400
           + + WN MIS   +   D                                          
Sbjct: 179 DVVTWNAMISGYNRIKKDVISWTAIVTGFVNTGQVDAARKYFHKMPERDHVSWTAMIDGY 238

Query: 401 ------EQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEG---LTYFE-SMTHDLG 450
                 ++A+ LF +M  S +KPD+ T+  +L AC   G ++ G    TY + +   +  
Sbjct: 239 LRLNCYKEALMLFREMQTSKIKPDEFTMVSVLTACAQLGALELGEWIRTYIDKNKVKNDT 298

Query: 451 IIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVV 510
            + N      LI++  + G  +  ++    +P + D + W A+     I+G  +    + 
Sbjct: 299 FVGNA-----LIDMYFKCGNVEMALSIFNTLP-QRDKFTWTAMVVGLAINGCGEEALNMF 352

Query: 511 DQLIDQN--PQSSATHGLLSS 529
            Q++  +  P      G+LS+
Sbjct: 353 SQMLKASVTPDEVTYVGVLSA 373



 Score = 48.9 bits (115), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 46/194 (23%), Positives = 81/194 (41%), Gaps = 6/194 (3%)

Query: 332 SLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYS--KCGCLNDGRQVFDLTDNKENSMLWNT 389
           S+ H KQ+H   I+T    N I+ + ++      + G +   RQ+FD T  + +   WN 
Sbjct: 26  SMYHLKQIHSRTIKTGIICNPIIQNKILSFCCSREFGDMCYARQLFD-TIPEPSVFSWNI 84

Query: 390 MISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDL 449
           M    ++    +  + L+ +M+  +VKPD  T   +    T S  +Q G           
Sbjct: 85  MFKGYSRIACPKLGVSLYLEMLERNVKPDCYTYPFLFKGFTRSVALQLGRE-LHCHVVKY 143

Query: 450 GIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNAL-HGVCRIHGNIDMGRK 508
           G+  N   H  LI + +  G  D +   +  M  + D   WNA+  G  RI  ++     
Sbjct: 144 GLDSNVFAHNALINMYSLCGLID-MARGIFDMSCKSDVVTWNAMISGYNRIKKDVISWTA 202

Query: 509 VVDQLIDQNPQSSA 522
           +V   ++     +A
Sbjct: 203 IVTGFVNTGQVDAA 216


>gi|15233234|ref|NP_188214.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218546758|sp|Q9LSB8.2|PP235_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g15930
 gi|332642227|gb|AEE75748.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 687

 Score =  304 bits (779), Expect = 7e-80,   Method: Compositional matrix adjust.
 Identities = 154/476 (32%), Positives = 264/476 (55%), Gaps = 1/476 (0%)

Query: 118 NLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLR 177
           NL+  N ++  Y+  G+M  AR +FD   + DV SWN MI GY +    EE ++    + 
Sbjct: 169 NLYVQNALVKMYSLCGLMDMARGVFDRRCKEDVFSWNLMISGYNRMKEYEESIELLVEME 228

Query: 178 RFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELS 237
           R  +S    +   +L+ C K+++  L ++VH  V       ++ + +++V+AYA CGE+ 
Sbjct: 229 RNLVSPTSVTLLLVLSACSKVKDKDLCKRVHEYVSECKTEPSLRLENALVNAYAACGEMD 288

Query: 238 DARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGL 297
            A R+F    ARDV++WT++V GY + G+++ A   F++MP ++ +SWT +I GY R G 
Sbjct: 289 IAVRIFRSMKARDVISWTSIVKGYVERGNLKLARTYFDQMPVRDRISWTIMIDGYLRAGC 348

Query: 298 GQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSS 357
             ++LE+F  M    + P++ T  S L ACA + SL+ G+ +  ++ +   +++ +V ++
Sbjct: 349 FNESLEIFREMQSAGMIPDEFTMVSVLTACAHLGSLEIGEWIKTYIDKNKIKNDVVVGNA 408

Query: 358 LIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKP 417
           LIDMY KCGC    ++VF   D ++    W  M+  L  +G  ++AI++F  M   S++P
Sbjct: 409 LIDMYFKCGCSEKAQKVFHDMDQRDK-FTWTAMVVGLANNGQGQEAIKVFFQMQDMSIQP 467

Query: 418 DKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQ 477
           D IT   +L+AC HSG+V +   +F  M  D  I P+  H+ C++++L +AG   +    
Sbjct: 468 DDITYLGVLSACNHSGMVDQARKFFAKMRSDHRIEPSLVHYGCMVDMLGRAGLVKEAYEI 527

Query: 478 LEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKG 537
           L KMP   +S +W AL G  R+H +  M      ++++  P + A + LL +IY+   + 
Sbjct: 528 LRKMPMNPNSIVWGALLGASRLHNDEPMAELAAKKILELEPDNGAVYALLCNIYAGCKRW 587

Query: 538 RLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQ 593
           + + +VR+ I +   KK    S IE+    H F   D  H   + +Y  LE+LA +
Sbjct: 588 KDLREVRRKIVDVAIKKTPGFSLIEVNGFAHEFVAGDKSHLQSEEIYMKLEELAQE 643



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 96/377 (25%), Positives = 179/377 (47%), Gaps = 38/377 (10%)

Query: 32  QLSEAISSLDLLAQ--RGIRLPAE-TLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTT 88
           ++ E   S++LL +  R +  P   TL  +L  C++ K   L KRVH ++   + + P+ 
Sbjct: 213 RMKEYEESIELLVEMERNLVSPTSVTLLLVLSACSKVKDKDLCKRVHEYVSECKTE-PSL 271

Query: 89  FLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAER 148
            L N L++ Y  CG    A ++F  +  +++ S+ +++ GY   G +K AR  FD M  R
Sbjct: 272 RLENALVNAYAACGEMDIAVRIFRSMKARDVISWTSIVKGYVERGNLKLARTYFDQMPVR 331

Query: 149 DVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVH 208
           D +SW  MI GY ++G   E L+ ++ ++   +  +EF+   +LT C  L  L++   + 
Sbjct: 332 DRISWTIMIDGYLRAGCFNESLEIFREMQSAGMIPDEFTMVSVLTACAHLGSLEIGEWIK 391

Query: 209 GQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDME 268
             +      ++VV+ ++++D Y KCG    A+++F + D RD  TWT MV G A      
Sbjct: 392 TYIDKNKIKNDVVVGNALIDMYFKCGCSEKAQKVFHDMDQRDKFTWTAMVVGLAN----- 446

Query: 269 SASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACA 328
                                     NG GQ+A+++F +M  + I+P+  T+   L AC 
Sbjct: 447 --------------------------NGQGQEAIKVFFQMQDMSIQPDDITYLGVLSACN 480

Query: 329 SIVSLKHGKQVHGFLIRTNFR--SNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSML 386
               +   ++    + R++ R   + +    ++DM  + G + +  ++        NS++
Sbjct: 481 HSGMVDQARKFFAKM-RSDHRIEPSLVHYGCMVDMLGRAGLVKEAYEILRKMPMNPNSIV 539

Query: 387 WNTMISALTQHGYDEQA 403
           W  ++ A   H  +  A
Sbjct: 540 WGALLGASRLHNDEPMA 556



 Score =  115 bits (287), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 104/430 (24%), Positives = 197/430 (45%), Gaps = 34/430 (7%)

Query: 133 GMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGIL 192
           G + +A  LF  + E DVV WN MI G++K     EG++ Y  + +  ++ +  +F  +L
Sbjct: 82  GHVSYAYKLFVKIPEPDVVVWNNMIKGWSKVDCDGEGVRLYLNMLKEGVTPDSHTFPFLL 141

Query: 193 TICVKLE--ELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARD 250
              +K +   L   +++H  V+  G  SN+ + +++V  Y+ CG +  AR +FD     D
Sbjct: 142 N-GLKRDGGALACGKKLHCHVVKFGLGSNLYVQNALVKMYSLCGLMDMARGVFDRRCKED 200

Query: 251 VLTWTTMVSGYAKLGDMESASKLFNEMPEKN---PVSWTTLIAGYTRNGLGQKAL--ELF 305
           V +W  M+SGY ++ + E + +L  EM E+N   P S T L+     + +  K L   + 
Sbjct: 201 VFSWNLMISGYNRMKEYEESIELLVEM-ERNLVSPTSVTLLLVLSACSKVKDKDLCKRVH 259

Query: 306 TRMMILRIRPN---QHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMY 362
             +   +  P+   ++   +   AC  +        +   + R+    + I  +S++  Y
Sbjct: 260 EYVSECKTEPSLRLENALVNAYAACGEM-------DIAVRIFRSMKARDVISWTSIVKGY 312

Query: 363 SKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITL 422
            + G L   R  FD    ++  + W  MI    + G   +++ +F +M  + + PD+ T+
Sbjct: 313 VERGNLKLARTYFDQMPVRDR-ISWTIMIDGYLRAGCFNESLEIFREMQSAGMIPDEFTM 371

Query: 423 AVILNACTHSGLVQEG---LTYFE--SMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQ 477
             +L AC H G ++ G    TY +   + +D+ ++ N      LI++  + GCS++    
Sbjct: 372 VSVLTACAHLGSLEIGEWIKTYIDKNKIKNDV-VVGN-----ALIDMYFKCGCSEKAQKV 425

Query: 478 LEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKG 537
              M  + D + W A+      +G      KV  Q+ D + Q      L   + SA    
Sbjct: 426 FHDMD-QRDKFTWTAMVVGLANNGQGQEAIKVFFQMQDMSIQPDDITYL--GVLSACNHS 482

Query: 538 RLVEKVRQLI 547
            +V++ R+  
Sbjct: 483 GMVDQARKFF 492



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 70/252 (27%), Positives = 118/252 (46%), Gaps = 34/252 (13%)

Query: 180 SISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDA 239
           SIS +   F  IL +C   ++ K   Q+H Q +  G   N                    
Sbjct: 29  SISNDYSRFISILGVCKTTDQFK---QLHSQSITRGVAPNPTFQ---------------- 69

Query: 240 RRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQ 299
           ++LF        + W + + G+     +  A KLF ++PE + V W  +I G+++     
Sbjct: 70  KKLF--------VFWCSRLGGH-----VSYAYKLFVKIPEPDVVVWNNMIKGWSKVDCDG 116

Query: 300 KALELFTRMMILRIRPNQHTFSSCLCACA-SIVSLKHGKQVHGFLIRTNFRSNTIVMSSL 358
           + + L+  M+   + P+ HTF   L        +L  GK++H  +++    SN  V ++L
Sbjct: 117 EGVRLYLNMLKEGVTPDSHTFPFLLNGLKRDGGALACGKKLHCHVVKFGLGSNLYVQNAL 176

Query: 359 IDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPD 418
           + MYS CG ++  R VFD    KE+   WN MIS   +    E++I L  +M R+ V P 
Sbjct: 177 VKMYSLCGLMDMARGVFD-RRCKEDVFSWNLMISGYNRMKEYEESIELLVEMERNLVSPT 235

Query: 419 KITLAVILNACT 430
            +TL ++L+AC+
Sbjct: 236 SVTLLLVLSACS 247


>gi|225445374|ref|XP_002281645.1| PREDICTED: pentatricopeptide repeat-containing protein At5g55740,
           chloroplastic-like [Vitis vinifera]
          Length = 858

 Score =  304 bits (779), Expect = 8e-80,   Method: Compositional matrix adjust.
 Identities = 162/532 (30%), Positives = 283/532 (53%), Gaps = 41/532 (7%)

Query: 102 GSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYA 161
           G    A  + + + + N+   +++++ Y+ +G+++ A  +F  M E+DVV+WN +I  Y 
Sbjct: 302 GKQGHAIAILNSLDLDNILG-SSIINFYSKVGLIEDAELVFSRMLEKDVVTWNLLISSYV 360

Query: 162 KSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVV 221
           +   V + L    ++R  ++  +  + + IL+       +KL ++ H   +     S+VV
Sbjct: 361 QHHQVGKALNMCHLMRSENLRFDSVTLSSILSASAVTSNIKLGKEGHCYCIRRNLESDVV 420

Query: 222 ISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMP--- 278
           +++SI+D YAKC  + DAR++FD T  RD++ W T+++ YA++G    A KLF +M    
Sbjct: 421 VANSIIDMYAKCERIDDARKVFDSTTERDLVLWNTLLAAYAQVGLSGEALKLFYQMQFDS 480

Query: 279 ------------------------------------EKNPVSWTTLIAGYTRNGLGQKAL 302
                                               + N ++WTTLI+G  ++G G +A+
Sbjct: 481 VPPNVISWNSVILGFLRNGQVNEAKDMFSQMQSLGFQPNLITWTTLISGLAQSGFGYEAI 540

Query: 303 ELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMY 362
             F +M    IRP+  + +S L AC  I SL +G+ +HGF+ R  F  +  V +SL+DMY
Sbjct: 541 LFFQKMQEAGIRPSIASITSVLLACTDIPSLWYGRAIHGFITRHEFCLSVPVATSLVDMY 600

Query: 363 SKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITL 422
           +KCG +++ ++VF +  +KE   ++N MISA   HG   +A+ LF  + +  ++PD IT 
Sbjct: 601 AKCGSIDEAKKVFHMMSSKELP-IYNAMISAYALHGQAVEALALFKHLQKEGIEPDSITF 659

Query: 423 AVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMP 482
             IL+AC+H+GLV EGL  F  M     + P  EH+ C++ LL++ G  D+ +  +  MP
Sbjct: 660 TSILSACSHAGLVNEGLNLFADMVSKHNMNPIMEHYGCVVSLLSRCGNLDEALRLILTMP 719

Query: 483 YEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEK 542
           ++ D+++  +L   CR H  I++G  +   L    P +S  +  LS+ Y+A G+   V  
Sbjct: 720 FQPDAHILGSLLTACREHHEIELGEYLSKHLFKLEPSNSGNYVALSNAYAAAGRWVEVSN 779

Query: 543 VRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQM 594
           +R L+  R  +K    SWI+   K++ F   D  HP  + +Y++L  L  +M
Sbjct: 780 MRDLMKVRGLRKNPGCSWIQTGGKLNVFVAGDGSHPKTEEIYAMLAMLLSEM 831



 Score =  178 bits (452), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 142/527 (26%), Positives = 231/527 (43%), Gaps = 104/527 (19%)

Query: 26  SLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLH-LKLTQRK 84
           SL   G L E++  L  +     ++  E    +LQ C   ++L  G+++H   LK     
Sbjct: 53  SLCKDGHLQESVHLLSEMEFEDFQIGPEIYGELLQGCVYERALHTGQQIHARILKNGDFF 112

Query: 85  TPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDN 144
               ++   L+  Y KC     A ++F ++ V+N+FS+  ++     +G  + A   F  
Sbjct: 113 AKNEYVETKLVVFYAKCDFPEVAVRLFHRLRVRNVFSWAAIVGLQCRMGFSEDALLGFIE 172

Query: 145 MAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLT 204
           M E  V   N                               F    +L  C  L+ + L 
Sbjct: 173 MQENGVFPDN-------------------------------FVLPNVLKACGSLQLIGLG 201

Query: 205 RQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKL 264
           + VHG VL  GF + V +SSS+VD Y KCG L DAR++FD    ++V+TW +M+ GY + 
Sbjct: 202 KGVHGYVLKMGFGACVFVSSSLVDMYGKCGVLEDARKVFDSMVEKNVVTWNSMIVGYVQN 261

Query: 265 GDMESASKLFNEM------PEKNPVS---------------------------------W 285
           G  + A  +F +M      P +  V+                                  
Sbjct: 262 GLNQEAIDVFYDMRVEGIEPTRVTVASFLSASANLDALIEGKQGHAIAILNSLDLDNILG 321

Query: 286 TTLIAGYTRNGLGQKALELFTRMM----------------------------ILR---IR 314
           +++I  Y++ GL + A  +F+RM+                            ++R   +R
Sbjct: 322 SSIINFYSKVGLIEDAELVFSRMLEKDVVTWNLLISSYVQHHQVGKALNMCHLMRSENLR 381

Query: 315 PNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQV 374
            +  T SS L A A   ++K GK+ H + IR N  S+ +V +S+IDMY+KC  ++D R+V
Sbjct: 382 FDSVTLSSILSASAVTSNIKLGKEGHCYCIRRNLESDVVVANSIIDMYAKCERIDDARKV 441

Query: 375 FDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGL 434
           FD T  ++  +LWNT+++A  Q G   +A++LF+ M   SV P+ I+   ++     +G 
Sbjct: 442 FDSTTERD-LVLWNTLLAAYAQVGLSGEALKLFYQMQFDSVPPNVISWNSVILGFLRNGQ 500

Query: 435 VQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKM 481
           V E    F  M   LG  PN      LI  LAQ+G   + +   +KM
Sbjct: 501 VNEAKDMFSQM-QSLGFQPNLITWTTLISGLAQSGFGYEAILFFQKM 546



 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 87/335 (25%), Positives = 159/335 (47%), Gaps = 47/335 (14%)

Query: 18  NCLIQSFLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLH 77
           N LI S+   +   Q+ +A++   L+    +R  + TL+ IL   A + ++KLGK  H +
Sbjct: 353 NLLISSY---VQHHQVGKALNMCHLMRSENLRFDSVTLSSILSASAVTSNIKLGKEGHCY 409

Query: 78  LKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKH 137
             + +       ++N +I MY KC    DARKVFD    ++L  +N +L+ YA +G+   
Sbjct: 410 C-IRRNLESDVVVANSIIDMYAKCERIDDARKVFDSTTERDLVLWNTLLAAYAQVGLSGE 468

Query: 138 ARNLFDNM----AERDVVSWNTMIIGYAKSGAVE-------------------------- 167
           A  LF  M       +V+SWN++I+G+ ++G V                           
Sbjct: 469 ALKLFYQMQFDSVPPNVISWNSVILGFLRNGQVNEAKDMFSQMQSLGFQPNLITWTTLIS 528

Query: 168 ---------EGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLS 218
                    E + F++ ++   I  +  S   +L  C  +  L   R +HG +    F  
Sbjct: 529 GLAQSGFGYEAILFFQKMQEAGIRPSIASITSVLLACTDIPSLWYGRAIHGFITRHEFCL 588

Query: 219 NVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMP 278
           +V +++S+VD YAKCG + +A+++F    ++++  +  M+S YA  G    A  LF  + 
Sbjct: 589 SVPVATSLVDMYAKCGSIDEAKKVFHMMSSKELPIYNAMISAYALHGQAVEALALFKHLQ 648

Query: 279 ----EKNPVSWTTLIAGYTRNGLGQKALELFTRMM 309
               E + +++T++++  +  GL  + L LF  M+
Sbjct: 649 KEGIEPDSITFTSILSACSHAGLVNEGLNLFADMV 683



 Score = 50.1 bits (118), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 35/152 (23%), Positives = 65/152 (42%), Gaps = 3/152 (1%)

Query: 289 IAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTN- 347
           I+   ++G  Q+++ L + M     +     +   L  C    +L  G+Q+H  +++   
Sbjct: 51  ISSLCKDGHLQESVHLLSEMEFEDFQIGPEIYGELLQGCVYERALHTGQQIHARILKNGD 110

Query: 348 -FRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRL 406
            F  N  V + L+  Y+KC       ++F     + N   W  ++    + G+ E A+  
Sbjct: 111 FFAKNEYVETKLVVFYAKCDFPEVAVRLFHRLRVR-NVFSWAAIVGLQCRMGFSEDALLG 169

Query: 407 FHDMVRSSVKPDKITLAVILNACTHSGLVQEG 438
           F +M  + V PD   L  +L AC    L+  G
Sbjct: 170 FIEMQENGVFPDNFVLPNVLKACGSLQLIGLG 201


>gi|225452922|ref|XP_002278886.1| PREDICTED: pentatricopeptide repeat-containing protein At3g29230
           [Vitis vinifera]
          Length = 594

 Score =  304 bits (779), Expect = 9e-80,   Method: Compositional matrix adjust.
 Identities = 176/539 (32%), Positives = 270/539 (50%), Gaps = 72/539 (13%)

Query: 54  TLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDK 113
           T  F+L+ C+    +++ + +H  ++         F+ N LI  YFKCG           
Sbjct: 117 TYPFLLKACSGKVWVRVVEMIHAQVE-KMGFCLDIFVPNSLIDSYFKCG----------- 164

Query: 114 IPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFY 173
                       L G A       AR +F+ MAERD VSWN+MI G  K G + E  + +
Sbjct: 165 ------------LDGVAA------ARKVFEVMAERDTVSWNSMIGGLVKVGELGEARRLF 206

Query: 174 -KVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAK 232
            ++  R ++S N                                        +I+D Y K
Sbjct: 207 DEMPERDTVSWN----------------------------------------TILDGYVK 226

Query: 233 CGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGY 292
            GE++ A  LF++  AR+V++W+TMV GY+K GDM+ A  LF++MP KN V WT +I+GY
Sbjct: 227 AGEMNAAFELFEKMPARNVVSWSTMVLGYSKAGDMDMARILFDKMPVKNLVPWTIMISGY 286

Query: 293 TRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNT 352
              GL + A+ L+ +M    ++ +  T  S L ACA    L  GK+VH  + RT F+ +T
Sbjct: 287 AEKGLAKDAINLYNQMEEAGLKFDDGTVISILSACAVSGLLGLGKRVHASIERTRFKCST 346

Query: 353 IVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVR 412
            V ++LIDMY+KCG L +   +F     K+  + WN +I  L  HG+ E+A++LF  M  
Sbjct: 347 PVSNALIDMYAKCGSLENALSIFHGMVRKD-VVSWNAIIQGLAMHGHGEKALQLFSRMKG 405

Query: 413 SSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSD 472
               PDK+T   +L ACTH+G V EGL YF +M  D G+ P  EH+ C+++LL + G   
Sbjct: 406 EGFVPDKVTFVGVLCACTHAGFVDEGLHYFHAMERDYGVPPEVEHYGCMVDLLGRGGRLK 465

Query: 473 QLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYS 532
           +    +  MP E ++ +W  L G CR+H    +  +V D+L+      S    +LS+IY+
Sbjct: 466 EAFRLVHSMPLEPNAIIWGTLLGACRMHSATGLAEEVFDRLVKSELSDSGNLSMLSNIYA 525

Query: 533 ALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLA 591
           A G       +R  +     +K    S IE++++VH F+V D  HP  D +Y  ++ L 
Sbjct: 526 AAGDWDNFANIRLRMKSTSIQKPSGGSSIEVDDEVHEFTVFDRSHPKSDRIYKTIDGLG 584



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 56/171 (32%), Positives = 88/171 (51%), Gaps = 9/171 (5%)

Query: 13  KNL-PNNCLIQSFLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLG 71
           KNL P   +I  +     KG   +AI+  + + + G++    T+  IL  CA S  L LG
Sbjct: 274 KNLVPWTIMISGY---AEKGLAKDAINLYNQMEEAGLKFDDGTVISILSACAVSGLLGLG 330

Query: 72  KRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYAN 131
           KRVH  ++ T+ K  T  +SN LI MY KCGS  +A  +F  +  K++ S+N ++ G A 
Sbjct: 331 KRVHASIERTRFKCSTP-VSNALIDMYAKCGSLENALSIFHGMVRKDVVSWNAIIQGLAM 389

Query: 132 LGMMKHARNLFDNMAER----DVVSWNTMIIGYAKSGAVEEGLKFYKVLRR 178
            G  + A  LF  M       D V++  ++     +G V+EGL ++  + R
Sbjct: 390 HGHGEKALQLFSRMKGEGFVPDKVTFVGVLCACTHAGFVDEGLHYFHAMER 440



 Score = 72.4 bits (176), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 57/239 (23%), Positives = 109/239 (45%), Gaps = 12/239 (5%)

Query: 249 RDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRM 308
           R+      +++ ++    M  A  +FN++ + + + + TLI  + RN     A  +F  M
Sbjct: 47  RESFVGQKLIAAFSLCRQMTLAVNVFNQIQDPDVLLYNTLIRAHVRNSEPLLAFSVFFEM 106

Query: 309 MILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGC- 367
               +  +  T+   L AC+  V ++  + +H  + +  F  +  V +SLID Y KCG  
Sbjct: 107 QDSGVCADNFTYPFLLKACSGKVWVRVVEMIHAQVEKMGFCLDIFVPNSLIDSYFKCGLD 166

Query: 368 -LNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVIL 426
            +   R+VF++   ++ ++ WN+MI  L + G   +A RLF +M       D ++   IL
Sbjct: 167 GVAAARKVFEVMAERD-TVSWNSMIGGLVKVGELGEARRLFDEMPER----DTVSWNTIL 221

Query: 427 NACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEH 485
           +    +G +      FE M        N    + ++   ++AG  D      +KMP ++
Sbjct: 222 DGYVKAGEMNAAFELFEKMPAR-----NVVSWSTMVLGYSKAGDMDMARILFDKMPVKN 275



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 48/199 (24%), Positives = 89/199 (44%), Gaps = 15/199 (7%)

Query: 332 SLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMI 391
           SL   KQ+H  +++ N    + V   LI  +S C  +     VF+   + +  +L+NT+I
Sbjct: 29  SLNQVKQIHAQVLKANLHRESFVGQKLIAAFSLCRQMTLAVNVFNQIQDPD-VLLYNTLI 87

Query: 392 SALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHS---GLVQEGLTYFESMTHD 448
            A  ++     A  +F +M  S V  D  T   +L AC+      +V+      E M   
Sbjct: 88  RAHVRNSEPLLAFSVFFEMQDSGVCADNFTYPFLLKACSGKVWVRVVEMIHAQVEKMGFC 147

Query: 449 LGI-IPN---QEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNID 504
           L I +PN     +  C ++ +A A        ++ ++  E D+  WN++ G     G + 
Sbjct: 148 LDIFVPNSLIDSYFKCGLDGVAAA-------RKVFEVMAERDTVSWNSMIGGLVKVGELG 200

Query: 505 MGRKVVDQLIDQNPQSSAT 523
             R++ D++ +++  S  T
Sbjct: 201 EARRLFDEMPERDTVSWNT 219


>gi|302141863|emb|CBI19066.3| unnamed protein product [Vitis vinifera]
          Length = 521

 Score =  304 bits (779), Expect = 9e-80,   Method: Compositional matrix adjust.
 Identities = 172/547 (31%), Positives = 287/547 (52%), Gaps = 73/547 (13%)

Query: 58  ILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVK 117
           +++QC   ++ + G+ +H H+                     K G       VF+     
Sbjct: 9   VIRQCGRFRAFRHGRSLHAHI--------------------IKLG-------VFN----- 36

Query: 118 NLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFY-KVL 176
           ++F  NN+L+ Y ++ ++K AR LFD   ER+V +W TMI  Y+ SG  +  LKFY ++L
Sbjct: 37  DVFFANNLLAMYVDISLLKDARRLFDETLERNVATWTTMISAYSSSGRPDTALKFYVQML 96

Query: 177 RRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGEL 236
              S + N F ++ +L  C  + +L+  + +HG+V       + V+ ++++D Y KCG L
Sbjct: 97  ESKSETPNGFLYSAVLKACGLVGDLESGKLIHGRVFRANLGFDTVLMNTLLDMYVKCGSL 156

Query: 237 SDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGY---- 292
           S AR++FD+       +W TM+SGY K G ME A  LF +MPE + VSW ++IAG+    
Sbjct: 157 SSARKVFDDILCPSSTSWNTMISGYGKEGLMEEAVNLFYQMPEPDTVSWNSIIAGFGILI 216

Query: 293 ----------------------------------TRNGLGQKALELFTRMMILRIRPNQH 318
                                             T+ GL      LF  M+ L I  +Q 
Sbjct: 217 DLYANDGKIKDALRLFYRLPEKDIVVWSSLISWCTKMGLNSLVFSLFRDMVNLDIEVDQF 276

Query: 319 TFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLT 378
             SS L AC+S+V L  GKQVH F +++ + S  I ++SLID+Y+KCG + DG  +F  T
Sbjct: 277 IISSVLKACSSLVGLGSGKQVHSFCVKSGYESERITVTSLIDLYAKCGEIEDGLALFYCT 336

Query: 379 DNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEG 438
             + +++ +  +I    Q+G   +A+  F +M+   +KP++IT   +L+AC H+GLV+E 
Sbjct: 337 SER-DTVCYTGIIMGCGQNGRAMEAVGFFQEMIELGLKPNEITFLGVLSACRHAGLVEEA 395

Query: 439 LTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCR 498
            T F+ M  +  + P+ EH+ C++ELL+QAGC  +    + +MP+E D  +WN+L G C 
Sbjct: 396 WTIFKYMKTEYKMEPHIEHYYCIVELLSQAGCFKEAEELIAEMPFEPDQTIWNSLLGACG 455

Query: 499 IHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAI 558
            H   ++   + ++L+   P+  +    LS++Y+ L       K+R++I +    KE   
Sbjct: 456 THKKTELVNFIAERLLTTLPEDPSILVTLSNVYATLEMWDDSRKMREVIKKVGM-KEAGK 514

Query: 559 SWIEIEN 565
           SWI+I++
Sbjct: 515 SWIQIKS 521



 Score = 62.4 bits (150), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 34/122 (27%), Positives = 60/122 (49%), Gaps = 2/122 (1%)

Query: 318 HTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDL 377
           H   S +  C    + +HG+ +H  +I+    ++    ++L+ MY     L D R++FD 
Sbjct: 4   HRIVSVIRQCGRFRAFRHGRSLHAHIIKLGVFNDVFFANNLLAMYVDISLLKDARRLFDE 63

Query: 378 TDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRS-SVKPDKITLAVILNACTHSGLVQ 436
           T  + N   W TMISA +  G  + A++ +  M+ S S  P+    + +L AC   G ++
Sbjct: 64  TLER-NVATWTTMISAYSSSGRPDTALKFYVQMLESKSETPNGFLYSAVLKACGLVGDLE 122

Query: 437 EG 438
            G
Sbjct: 123 SG 124


>gi|147854092|emb|CAN83391.1| hypothetical protein VITISV_041405 [Vitis vinifera]
          Length = 886

 Score =  304 bits (779), Expect = 9e-80,   Method: Compositional matrix adjust.
 Identities = 168/565 (29%), Positives = 288/565 (50%), Gaps = 65/565 (11%)

Query: 31  GQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFL 90
           GQ  +A+   + +   G +  + TL  ++  CA    L+ GK +H+ L +        F+
Sbjct: 378 GQPEKALELFEEMKVSGFKPDSVTLTTVISSCARLLDLERGKEIHMEL-VRSGFALDGFV 436

Query: 91  SNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDV 150
           S+ L+ MY KCG                                ++ A+ +F+ +  ++V
Sbjct: 437 SSALVDMYGKCGC-------------------------------LEMAKEVFEQIQRKNV 465

Query: 151 VSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQ 210
           VSWN+MI GY+  G  +  ++ ++ +    I     + + IL  C +   L+L + +HG 
Sbjct: 466 VSWNSMIAGYSLKGDSKSCIELFRRMDEEGIRPTLTTLSSILMACSRSVNLQLGKFIHGY 525

Query: 211 VLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESA 270
           ++     +++ ++SS++D Y KC                               G++ SA
Sbjct: 526 IIRNRVEADIFVNSSLIDLYFKC-------------------------------GNIGSA 554

Query: 271 SKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASI 330
             +F  MP+ N VSW  +I+GY + G   +AL +FT M    ++P+  TF+S L AC+ +
Sbjct: 555 ENVFQNMPKTNVVSWNVMISGYVKVGSYLEALVIFTDMRKAGVKPDAITFTSVLPACSQL 614

Query: 331 VSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTM 390
             L+ GK++H F+I +    N +VM +L+DMY+KCG +++   +F+    + + + W +M
Sbjct: 615 AVLEKGKEIHNFIIESKLEINEVVMGALLDMYAKCGAVDEALHIFNQLPER-DFVSWTSM 673

Query: 391 ISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLG 450
           I+A   HG   +A++LF  M +S  KPDK+T   IL+AC+H+GLV EG  YF  M  + G
Sbjct: 674 IAAYGSHGQAFEALKLFEKMQQSDAKPDKVTFLAILSACSHAGLVDEGCYYFNQMIAEYG 733

Query: 451 IIPNQEHHACLIELLAQAGCSDQLMNQLEKMP-YEHDSYLWNALHGVCRIHGNIDMGRKV 509
             P  EH++CLI+LL + G   +    L++ P    D  L + L   C +H  +D+G ++
Sbjct: 734 FKPAVEHYSCLIDLLGRVGRLREAYEILQRTPDIREDVGLLSTLFSACHLHKKLDLGEQI 793

Query: 510 VDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHA 569
              LI+++P   +T+ +LS++Y+++ K   V KVR  I E   KK    SWIE+  ++H 
Sbjct: 794 GRLLIEKDPDDPSTYIILSNMYASVKKWDEVRKVRLKIKELGLKKNPGCSWIEVGKRIHP 853

Query: 570 FSVSDSLHPMRDVLYSVLEQLAGQM 594
           F V D  HP  D++Y  +  LA  +
Sbjct: 854 FVVEDKSHPQADMIYECMSILASHV 878



 Score =  199 bits (505), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 122/429 (28%), Positives = 213/429 (49%), Gaps = 40/429 (9%)

Query: 129 YANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSF 188
           YA   + + A  LFD M ERDV SWN +I  Y + G  E+ L+ ++ ++      +  + 
Sbjct: 343 YAKCNVFEDAIKLFDEMPERDVASWNNVISCYYQDGQPEKALELFEEMKVSGFKPDSVTL 402

Query: 189 AGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDA 248
             +++ C +L +L+  +++H +++ +GF  +  +SS++VD Y KCG L  A+ +F++   
Sbjct: 403 TTVISSCARLLDLERGKEIHMELVRSGFALDGFVSSALVDMYGKCGCLEMAKEVFEQIQR 462

Query: 249 RDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRM 308
           ++V++W +M++GY+  GD +S  +LF  M E+                            
Sbjct: 463 KNVVSWNSMIAGYSLKGDSKSCIELFRRMDEEG--------------------------- 495

Query: 309 MILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCL 368
               IRP   T SS L AC+  V+L+ GK +HG++IR    ++  V SSLID+Y KCG +
Sbjct: 496 ----IRPTLTTLSSILMACSRSVNLQLGKFIHGYIIRNRVEADIFVNSSLIDLYFKCGNI 551

Query: 369 NDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNA 428
                VF     K N + WN MIS   + G   +A+ +F DM ++ VKPD IT   +L A
Sbjct: 552 GSAENVFQ-NMPKTNVVSWNVMISGYVKVGSYLEALVIFTDMRKAGVKPDAITFTSVLPA 610

Query: 429 CTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSY 488
           C+   ++++G     +   +  +  N+     L+++ A+ G  D+ ++   ++P E D  
Sbjct: 611 CSQLAVLEKG-KEIHNFIIESKLEINEVVMGALLDMYAKCGAVDEALHIFNQLP-ERDFV 668

Query: 489 LWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEK----VR 544
            W ++      HG      K+ +++  Q   +        +I SA     LV++      
Sbjct: 669 SWTSMIAAYGSHGQAFEALKLFEKM--QQSDAKPDKVTFLAILSACSHAGLVDEGCYYFN 726

Query: 545 QLINERQFK 553
           Q+I E  FK
Sbjct: 727 QMIAEYGFK 735



 Score =  161 bits (408), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 123/479 (25%), Positives = 225/479 (46%), Gaps = 62/479 (12%)

Query: 123 NNMLSGYANLGMMKHARNLFDNMAER-DVVSWNTMIIGYAKSGAVEEGLK-FYKVLRRFS 180
            ++++ Y +  + + A+ +F  +    D+  WN ++    K+    EGL+ F+++L    
Sbjct: 234 KSLINLYFSCHLFQSAKLVFQTIENPLDITLWNGLMAACTKNFIFIEGLEVFHRLLHFPY 293

Query: 181 ISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDAR 240
           +  + F++  +L  C  L  +   + VH  V+ +GF                        
Sbjct: 294 LKPDAFTYPSVLKACSGLGRVGYGKMVHTHVIKSGF------------------------ 329

Query: 241 RLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQK 300
                  A DV+  ++ V  YAK    E A KLF+EMPE++  SW  +I+ Y ++G  +K
Sbjct: 330 -------AMDVVVMSSAVGMYAKCNVFEDAIKLFDEMPERDVASWNNVISCYYQDGQPEK 382

Query: 301 ALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLID 360
           ALELF  M +   +P+  T ++ + +CA ++ L+ GK++H  L+R+ F  +  V S+L+D
Sbjct: 383 ALELFEEMKVSGFKPDSVTLTTVISSCARLLDLERGKEIHMELVRSGFALDGFVSSALVD 442

Query: 361 MYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKI 420
           MY KCGCL   ++VF+    K N + WN+MI+  +  G  +  I LF  M    ++P   
Sbjct: 443 MYGKCGCLEMAKEVFEQIQRK-NVVSWNSMIAGYSLKGDSKSCIELFRRMDEEGIRPTLT 501

Query: 421 TLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEH-----HACLIELLAQAGCSDQLM 475
           TL+ IL AC+ S  +Q G        H   II N+       ++ LI+L  + G      
Sbjct: 502 TLSSILMACSRSVNLQLG-----KFIHGY-IIRNRVEADIFVNSSLIDLYFKCGNIGSAE 555

Query: 476 NQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHG---LLSSIYS 532
           N  + MP + +   WN +     I G + +G  +   +I  + + +         +S+  
Sbjct: 556 NVFQNMP-KTNVVSWNVM-----ISGYVKVGSYLEALVIFTDMRKAGVKPDAITFTSVLP 609

Query: 533 ALGKGRLVEKVRQLIN---ERQFKKEQAISWIEIENKVHAFSVSDSLH-----PMRDVL 583
           A  +  ++EK +++ N   E + +  + +    ++      +V ++LH     P RD +
Sbjct: 610 ACSQLAVLEKGKEIHNFIIESKLEINEVVMGALLDMYAKCGAVDEALHIFNQLPERDFV 668



 Score =  131 bits (330), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 101/391 (25%), Positives = 174/391 (44%), Gaps = 69/391 (17%)

Query: 10  INRKNLPN-NCLIQSFLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSL 68
           I RKN+ + N +I  + SL  KG     I     + + GIR    TL+ IL  C+ S +L
Sbjct: 460 IQRKNVVSWNSMIAGY-SL--KGDSKSCIELFRRMDEEGIRPTLTTLSSILMACSRSVNL 516

Query: 69  KLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSG 128
           +LGK +H ++ +  R     F+++ LI +YFKCG+   A  VF  +P  N+ S+N M+SG
Sbjct: 517 QLGKFIHGYI-IRNRVEADIFVNSSLIDLYFKCGNIGSAENVFQNMPKTNVVSWNVMISG 575

Query: 129 YANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSF 188
           Y  +G    A  +F +M                               R+  +  +  +F
Sbjct: 576 YVKVGSYLEALVIFTDM-------------------------------RKAGVKPDAITF 604

Query: 189 AGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDA 248
             +L  C +L  L+  +++H  ++ +    N V+  +++D YAKCG + +A  +F++   
Sbjct: 605 TSVLPACSQLAVLEKGKEIHNFIIESKLEINEVVMGALLDMYAKCGAVDEALHIFNQLPE 664

Query: 249 RDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRM 308
           RD ++WT+M++ Y   G    A KLF +M + +                           
Sbjct: 665 RDFVSWTSMIAAYGSHGQAFEALKLFEKMQQSDA-------------------------- 698

Query: 309 MILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLI-RTNFRSNTIVMSSLIDMYSKCGC 367
                +P++ TF + L AC+    +  G      +I    F+      S LID+  + G 
Sbjct: 699 -----KPDKVTFLAILSACSHAGLVDEGCYYFNQMIAEYGFKPAVEHYSCLIDLLGRVGR 753

Query: 368 LNDGRQVFDLT-DNKENSMLWNTMISALTQH 397
           L +  ++   T D +E+  L +T+ SA   H
Sbjct: 754 LREAYEILQRTPDIREDVGLLSTLFSACHLH 784



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 29/104 (27%), Positives = 53/104 (50%), Gaps = 1/104 (0%)

Query: 336 GKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALT 395
           GK +H  ++    ++N  +  SLI++Y  C      + VF   +N  +  LWN +++A T
Sbjct: 214 GKLIHQKIVSLGLQNNITLCKSLINLYFSCHLFQSAKLVFQTIENPLDITLWNGLMAACT 273

Query: 396 QHGYDEQAIRLFHDMVR-SSVKPDKITLAVILNACTHSGLVQEG 438
           ++    + + +FH ++    +KPD  T   +L AC+  G V  G
Sbjct: 274 KNFIFIEGLEVFHRLLHFPYLKPDAFTYPSVLKACSGLGRVGYG 317


>gi|296083564|emb|CBI23556.3| unnamed protein product [Vitis vinifera]
          Length = 827

 Score =  304 bits (778), Expect = 9e-80,   Method: Compositional matrix adjust.
 Identities = 179/597 (29%), Positives = 301/597 (50%), Gaps = 71/597 (11%)

Query: 15  LPNNCLIQSFLSLISKGQLSEAISSLDLLAQRGIR--LPAE-TLAFILQQCAESKSLKLG 71
           +P   L+   L +    QL  A  ++DL     +   +P   T + +L  C E   L LG
Sbjct: 209 MPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTELGLLALG 268

Query: 72  KRVH---LHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSG 128
           K++H   + L L         +   L+ MY KC +D                        
Sbjct: 269 KQLHSRVIRLGLAL----DVCVGCSLVDMYAKCAAD------------------------ 300

Query: 129 YANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVE-EGLKFYKVLRRFSISCNEFS 187
               G +  +R +F+ M E +V+SW  +I  Y +SG  + E ++ +  +    I  N FS
Sbjct: 301 ----GSVDDSRKVFEQMPEHNVMSWTAIITAYVQSGECDKEAIELFCKMISGHIRPNHFS 356

Query: 188 FAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETD 247
           F+ +L  C  L +     QV+   +  G  S   + +S                      
Sbjct: 357 FSSVLKACGNLSDPYTGEQVYSYAVKLGIASVNCVGNS---------------------- 394

Query: 248 ARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTR 307
                    ++S YA+ G ME A K F+ + EKN VS+  ++ GY +N   ++A  LF  
Sbjct: 395 ---------LISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNE 445

Query: 308 MMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGC 367
           +    I  +  TF+S L   ASI ++  G+Q+HG L++  ++SN  + ++LI MYS+CG 
Sbjct: 446 IADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALISMYSRCGN 505

Query: 368 LNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILN 427
           +    QVF+  +++ N + W +MI+   +HG+  +A+ +FH M+ +  KP++IT   +L+
Sbjct: 506 IEAAFQVFNEMEDR-NVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEITYVAVLS 564

Query: 428 ACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDS 487
           AC+H G++ EG  +F SM  + GI+P  EH+AC+++LL ++G   + M  +  MP   D+
Sbjct: 565 ACSHVGMISEGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSMPLMADA 624

Query: 488 YLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLI 547
            +W  L G CR+HGN ++GR   + +++Q P   A + LLS+++++ G+ + V K+R+ +
Sbjct: 625 LVWRTLLGACRVHGNTELGRHAAEMILEQEPDDPAAYILLSNLHASAGQWKDVVKIRKSM 684

Query: 548 NERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQMGEDAPSLDAD 604
            ER   KE   SWIE+EN+VH F V ++ HP    +Y  L+QLA ++ E     D D
Sbjct: 685 KERNLIKEAGCSWIEVENRVHRFHVGETSHPQAWQIYQELDQLASKIKEMGYIPDTD 741



 Score =  167 bits (424), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 113/405 (27%), Positives = 192/405 (47%), Gaps = 69/405 (17%)

Query: 31  GQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFL 90
           G+L  A S+LDL+ Q+       T + +L+ C   ++ +LGK VH  L  +  +  +  L
Sbjct: 23  GRLHHAFSTLDLMTQQNAPPDLTTYSILLKSCIRFRNFQLGKLVHRKLMQSGLELDSVVL 82

Query: 91  SNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMA-ERD 149
            N LIS+Y KCG                                 + AR +F+ M  +RD
Sbjct: 83  -NTLISLYSKCGD-------------------------------TETARLIFEGMGNKRD 110

Query: 150 VVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHG 209
           +VSW+ M+  +A +    + +  +  +       NE+ FA ++  C       +   ++G
Sbjct: 111 LVSWSAMVSCFANNSMEWQAIWTFLDMLELGFYPNEYCFAAVIRACSNANYAWVGEIIYG 170

Query: 210 QVLVTGFL-SNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDME 268
            V+ TG+L ++V +   ++D + K                                GD+ 
Sbjct: 171 FVVKTGYLEADVCVGCELIDMFVKGS------------------------------GDLG 200

Query: 269 SASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACA 328
           SA K+F++MPE+N V+WT +I  + + G  + A++LF  M +    P++ T+SS L AC 
Sbjct: 201 SAYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACT 260

Query: 329 SIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKC---GCLNDGRQVFDLTDNKENSM 385
            +  L  GKQ+H  +IR     +  V  SL+DMY+KC   G ++D R+VF+    + N M
Sbjct: 261 ELGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMP-EHNVM 319

Query: 386 LWNTMISALTQHGY-DEQAIRLFHDMVRSSVKPDKITLAVILNAC 429
            W  +I+A  Q G  D++AI LF  M+   ++P+  + + +L AC
Sbjct: 320 SWTAIITAYVQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKAC 364



 Score =  116 bits (290), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 84/313 (26%), Positives = 151/313 (48%), Gaps = 40/313 (12%)

Query: 187 SFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDET 246
           +++ +L  C++    +L + VH +++ +G   + V+ ++++  Y+KCG+   AR +F+  
Sbjct: 46  TYSILLKSCIRFRNFQLGKLVHRKLMQSGLELDSVVLNTLISLYSKCGDTETARLIFEGM 105

Query: 247 -DARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELF 305
            + RD+++W+ MVS +A                  N + W              +A+  F
Sbjct: 106 GNKRDLVSWSAMVSCFA-----------------NNSMEW--------------QAIWTF 134

Query: 306 TRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNF-RSNTIVMSSLIDMYSK 364
             M+ L   PN++ F++ + AC++      G+ ++GF+++T +  ++  V   LIDM+ K
Sbjct: 135 LDMLELGFYPNEYCFAAVIRACSNANYAWVGEIIYGFVVKTGYLEADVCVGCELIDMFVK 194

Query: 365 -CGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLA 423
             G L    +VFD    + N + W  MI+   Q G    AI LF DM  S   PD+ T +
Sbjct: 195 GSGDLGSAYKVFDKMPER-NLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYS 253

Query: 424 VILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQA---GCSDQLMNQLEK 480
            +L+ACT  GL+  G     S    LG+  +      L+++ A+    G  D      E+
Sbjct: 254 SVLSACTELGLLALG-KQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQ 312

Query: 481 MPYEHDSYLWNAL 493
           MP EH+   W A+
Sbjct: 313 MP-EHNVMSWTAI 324



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 63/285 (22%), Positives = 121/285 (42%), Gaps = 38/285 (13%)

Query: 315 PNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQV 374
           P+  T+S  L +C    + + GK VH  L+++    +++V+++LI +YSKCG     R +
Sbjct: 42  PDLTTYSILLKSCIRFRNFQLGKLVHRKLMQSGLELDSVVLNTLISLYSKCGDTETARLI 101

Query: 375 FDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGL 434
           F+   NK + + W+ M+S    +  + QAI  F DM+     P++   A ++ AC+++  
Sbjct: 102 FEGMGNKRDLVSWSAMVSCFANNSMEWQAIWTFLDMLELGFYPNEYCFAAVIRACSNANY 161

Query: 435 VQEG-----------------------LTYFESMTHDLGI-------IP--NQEHHACLI 462
              G                       +  F   + DLG        +P  N      +I
Sbjct: 162 AWVGEIIYGFVVKTGYLEADVCVGCELIDMFVKGSGDLGSAYKVFDKMPERNLVTWTLMI 221

Query: 463 ELLAQAGCSDQLMN---QLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQ 519
              AQ GC+   ++    +E   Y  D + ++++   C   G + +G+++  ++I     
Sbjct: 222 TRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTELGLLALGKQLHSRVIRLGLA 281

Query: 520 SSATHGL-LSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEI 563
                G  L  +Y+       V+  R++    Q  +   +SW  I
Sbjct: 282 LDVCVGCSLVDMYAKCAADGSVDDSRKVF--EQMPEHNVMSWTAI 324


>gi|255576950|ref|XP_002529360.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223531180|gb|EEF33027.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 683

 Score =  304 bits (778), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 161/471 (34%), Positives = 268/471 (56%), Gaps = 15/471 (3%)

Query: 123 NNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLK-FYKVLRRFSI 181
           N+++  YA L +    + LFD M +RDV+SWN MI GY K    E+ +  F ++     +
Sbjct: 176 NSLIDMYAQLALTDVMKMLFDEMPDRDVISWNVMISGYVKCRRFEDAINVFCRMQEESGL 235

Query: 182 SCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNV----VISSSIVDAYAKCGELS 237
             +E +    L+ C  L+ L+L +++H  V       NV    +I ++++D Y KCG LS
Sbjct: 236 MPDEATVVSTLSACTALKRLELGKKIHHYVR-----DNVKFTPIIGNALLDMYCKCGCLS 290

Query: 238 DARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGL 297
            AR +F+E  +++V+ WTTMVSGYA  G++E A +LF   P ++ V WT +I GY +   
Sbjct: 291 IARAVFEEMPSKNVICWTTMVSGYANCGELEEARELFEGSPIRDVVIWTAMINGYVQFNR 350

Query: 298 GQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSS 357
             +A+ LF  M I +++P++    S L  CA   +++ GK +H F+       + +V ++
Sbjct: 351 FDEAVALFREMQIRKVKPDKFIVVSLLTGCAQTGAIEQGKWIHEFIDENRIPIDAVVGTA 410

Query: 358 LIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKP 417
           LI+MY+KCG +    ++F     K+ +  W ++I  L  +G   +A+ LF  M ++ V+P
Sbjct: 411 LIEMYAKCGFIEKALEIFYGLRVKDTAS-WTSIICGLAMNGKTSKALELFSKMKQAGVRP 469

Query: 418 DKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQ 477
           D IT   +L+AC+H GLV+EG  +F SM  +  I P  EH+ CL++LL +AG  ++    
Sbjct: 470 DDITFIGVLSACSHGGLVEEGRKFFNSMRMEYQIKPKVEHYGCLVDLLGRAGLLNEAEEL 529

Query: 478 LEKMPYEHDSY---LWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSAL 534
           ++K+P E+ +    L+ +L   CRI+GN++MG +V  QL+      S+ H LL++IY+  
Sbjct: 530 IKKIPDENKAITVPLYGSLLSACRIYGNVEMGERVAKQLVKFESSDSSVHTLLANIYAFA 589

Query: 535 GKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHP-MRDVLY 584
            +   V KVR+ + +   KK    S IE+++ +H F      HP MR++ Y
Sbjct: 590 DRWEDVTKVRRKMKDLGVKKTPGCSSIEVDSIIHEFFSGHPSHPEMREIYY 640



 Score =  152 bits (385), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 99/387 (25%), Positives = 185/387 (47%), Gaps = 40/387 (10%)

Query: 32  QLSEAISSLDLLAQRGIRLPAE-TLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFL 90
           +  +AI+    + +    +P E T+   L  C   K L+LGK++H +++   + TP   +
Sbjct: 218 RFEDAINVFCRMQEESGLMPDEATVVSTLSACTALKRLELGKKIHHYVRDNVKFTP--II 275

Query: 91  SNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDV 150
            N L+ MY KCG    AR VF+++P KN+  +  M+SGYAN G ++ AR LF+    RDV
Sbjct: 276 GNALLDMYCKCGCLSIARAVFEEMPSKNVICWTTMVSGYANCGELEEARELFEGSPIRDV 335

Query: 151 VSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQ 210
           V W  MI GY +    +E +  ++ ++   +  ++F    +LT C +   ++  + +H  
Sbjct: 336 VIWTAMINGYVQFNRFDEAVALFREMQIRKVKPDKFIVVSLLTGCAQTGAIEQGKWIHEF 395

Query: 211 VLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESA 270
           +       + V+ +++++ YAKCG +  A  +F     +D  +WT+++ G A        
Sbjct: 396 IDENRIPIDAVVGTALIEMYAKCGFIEKALEIFYGLRVKDTASWTSIICGLA-------- 447

Query: 271 SKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASI 330
                                   NG   KALELF++M    +RP+  TF   L AC+  
Sbjct: 448 -----------------------MNGKTSKALELFSKMKQAGVRPDDITFIGVLSACSHG 484

Query: 331 VSLKHGKQVHGFLIRTNFRSNTIV--MSSLIDMYSKCGCLNDGRQVFDLTDNKENSM--- 385
             ++ G++    + R  ++    V     L+D+  + G LN+  ++     ++  ++   
Sbjct: 485 GLVEEGRKFFNSM-RMEYQIKPKVEHYGCLVDLLGRAGLLNEAEELIKKIPDENKAITVP 543

Query: 386 LWNTMISALTQHGYDEQAIRLFHDMVR 412
           L+ +++SA   +G  E   R+   +V+
Sbjct: 544 LYGSLLSACRIYGNVEMGERVAKQLVK 570



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 119/510 (23%), Positives = 219/510 (42%), Gaps = 78/510 (15%)

Query: 79  KLTQRKTPTTFLSNHLISMYFK-CGSDVDARKVFDKIPV----KNLFSYNNMLSGYANL- 132
           K +    PTT LS      Y K C S    +++  +I      +++ S N +++   +  
Sbjct: 24  KFSTFTNPTTGLSQQSCISYLKSCKSMTHLKQIHAQIFRVGLHQDIVSLNKLMAFCTDPF 83

Query: 133 -GMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGI 191
            G + +A  +F  +    ++ +N +I  +AK G  +  L  +  LR   +  + F++  +
Sbjct: 84  NGNLNYAEKMFKYIRYPCLLIYNLIIKAFAKKGNYKRTLVLFSKLREDGLWPDNFTYPFV 143

Query: 192 LTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDV 251
                 L E+    ++ G V  TG   +  + +S++D YA+       + LFDE   RDV
Sbjct: 144 FKAIGYLGEVSKAEKLRGLVTKTGLEFDTYVRNSLIDMYAQLALTDVMKMLFDEMPDRDV 203

Query: 252 LTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMIL 311
           ++W  M+SGY K    E A  +F  M E++                              
Sbjct: 204 ISWNVMISGYVKCRRFEDAINVFCRMQEESG----------------------------- 234

Query: 312 RIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDG 371
            + P++ T  S L AC ++  L+ GK++H + +R N +   I+ ++L+DMY KCGCL+  
Sbjct: 235 -LMPDEATVVSTLSACTALKRLELGKKIHHY-VRDNVKFTPIIGNALLDMYCKCGCLSIA 292

Query: 372 RQVFDLTDNK------------------------------ENSMLWNTMISALTQHGYDE 401
           R VF+   +K                               + ++W  MI+   Q    +
Sbjct: 293 RAVFEEMPSKNVICWTTMVSGYANCGELEEARELFEGSPIRDVVIWTAMINGYVQFNRFD 352

Query: 402 QAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIP-NQEHHAC 460
           +A+ LF +M    VKPDK  +  +L  C  +G +++G    E +  D   IP +      
Sbjct: 353 EAVALFREMQIRKVKPDKFIVVSLLTGCAQTGAIEQGKWIHEFI--DENRIPIDAVVGTA 410

Query: 461 LIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQS 520
           LIE+ A+ G  ++ +     +  + D+  W ++  +C +  N    + +  +L  +  Q+
Sbjct: 411 LIEMYAKCGFIEKALEIFYGLRVK-DTASWTSI--ICGLAMNGKTSKAL--ELFSKMKQA 465

Query: 521 SATHGLLS--SIYSALGKGRLVEKVRQLIN 548
                 ++   + SA   G LVE+ R+  N
Sbjct: 466 GVRPDDITFIGVLSACSHGGLVEEGRKFFN 495


>gi|449476598|ref|XP_004154781.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39350-like [Cucumis sativus]
          Length = 709

 Score =  304 bits (778), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 172/561 (30%), Positives = 286/561 (50%), Gaps = 83/561 (14%)

Query: 86  PTTFLSNHLISMYFKCGSDVDARKVFDKI-------PVK--------------------- 117
           P+ FL N +I MY   G   DA +VFD +       P K                     
Sbjct: 146 PSLFLWNAIIKMYVDKGFHFDALRVFDSMICSGKFWPDKYTFPLVIKACSVMSMLNVGVL 205

Query: 118 ------------NLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGA 165
                       N+F  N++L+ Y N G +  AR +F+ M +R VVSWNTMI G+ ++G 
Sbjct: 206 IHGRALVSGFSSNMFVQNSLLAMYMNCGKVGLARQVFNVMLKRSVVSWNTMISGWFQNGR 265

Query: 166 VEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSS 225
            EE L  +  +    +  +  +    L  C  L+EL+L  +VH  V        + + ++
Sbjct: 266 PEEALAVFNSMMDARVEPDSATIVSALPSCGYLKELELGIKVHKLVQKNHLQEKIEVRNA 325

Query: 226 IVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKL------------ 273
           +VD Y++CG + +A  +F ET  +DV+TWT+M++GY   G+ +SA  L            
Sbjct: 326 LVDMYSRCGGIDEASLVFAETKEKDVITWTSMINGYIMNGNAKSALALCPAMQLDGVVPN 385

Query: 274 ------------------------------FNEMPEKNPVSWTTLIAGYTRNGLGQKALE 303
                                         F +  +K  V W  L++G   N L ++A+ 
Sbjct: 386 AVTLASLLSACASLCYMYAKCNAVSYSFQVFAKTSKKRTVPWNALLSGLIHNELAREAVG 445

Query: 304 LFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYS 363
           LF  M+I  +  N  TF+S + A A +  LK    +H +L+R+ F S   V++ LIDMYS
Sbjct: 446 LFKSMLIEEVEANHATFNSVIPAYAILADLKQVMNLHSYLVRSGFISKIAVITGLIDMYS 505

Query: 364 KCGCLNDGRQVFDLTDNKENSML-WNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITL 422
           KCG L+   ++FD   NKE  ++ W+ +I+    HG+ E A+ LF+ MV S ++P++IT 
Sbjct: 506 KCGSLDYAHKIFDEIPNKEKDIIVWSVLIAGYGMHGHGETAVLLFNQMVHSGMQPNEITF 565

Query: 423 AVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMP 482
             +L+AC+H GLV +GLT F+ M  +    P   H+ C+++LL +AG  D+  + ++ MP
Sbjct: 566 TSVLHACSHRGLVDDGLTLFKYMIENYPSSPLPNHYTCVVDLLGRAGRLDEAYDLIKSMP 625

Query: 483 YEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEK 542
           ++ +  +W AL G C IH N+++G    ++L +  P+S+  + LL++IY+A+G+ +  E 
Sbjct: 626 FQQNHSIWGALLGACLIHQNVELGEVAAERLFELEPESTGNYILLANIYAAVGRWKDAEN 685

Query: 543 VRQLINERQFKKEQAISWIEI 563
           VR ++++   +K  A S + +
Sbjct: 686 VRHIMSKIGLRKTPAQSSVGV 706



 Score =  142 bits (358), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 101/375 (26%), Positives = 175/375 (46%), Gaps = 64/375 (17%)

Query: 58  ILQQCAESKSLKLGKRVHLHLKLTQRKTPTTF--LSNHLISMYFKCGSDVDARKVFDKIP 115
           +L+  A ++SL   K +H H   +       F  L +HL   Y  CG    ARK+FD + 
Sbjct: 85  LLRHYAATRSLNKTKILHGHTITSGLLHSPNFIHLPSHLAVSYAFCGCVPLARKLFDDLS 144

Query: 116 VKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKV 175
             +LF +N ++  Y + G    A  +FD+M                 SG      KF+  
Sbjct: 145 DPSLFLWNAIIKMYVDKGFHFDALRVFDSM---------------ICSG------KFWP- 182

Query: 176 LRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGE 235
                   ++++F  ++  C  +  L +   +HG+ LV+GF SN+ + +S++  Y  CG+
Sbjct: 183 --------DKYTFPLVIKACSVMSMLNVGVLIHGRALVSGFSSNMFVQNSLLAMYMNCGK 234

Query: 236 LSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRN 295
           +  AR++F+    R V++W TM+SG+ +                               N
Sbjct: 235 VGLARQVFNVMLKRSVVSWNTMISGWFQ-------------------------------N 263

Query: 296 GLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVM 355
           G  ++AL +F  MM  R+ P+  T  S L +C  +  L+ G +VH  + + + +    V 
Sbjct: 264 GRPEEALAVFNSMMDARVEPDSATIVSALPSCGYLKELELGIKVHKLVQKNHLQEKIEVR 323

Query: 356 SSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSV 415
           ++L+DMYS+CG +++   VF  T  K+  + W +MI+    +G  + A+ L   M    V
Sbjct: 324 NALVDMYSRCGGIDEASLVFAETKEKD-VITWTSMINGYIMNGNAKSALALCPAMQLDGV 382

Query: 416 KPDKITLAVILNACT 430
            P+ +TLA +L+AC 
Sbjct: 383 VPNAVTLASLLSACA 397


>gi|357483509|ref|XP_003612041.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355513376|gb|AES94999.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 518

 Score =  304 bits (778), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 154/487 (31%), Positives = 268/487 (55%), Gaps = 3/487 (0%)

Query: 109 KVFDKIPVKNLFSYNNMLSGYANLGM--MKHARNLFDNMAERDVVSWNTMIIGYAKSGAV 166
           ++  K  +++  + + +L+ YA++    + +AR +FD ++  + V WNTMI  Y+ S   
Sbjct: 33  QLLKKGTIRHKLTVSRLLTTYASMEFSNLTYARMVFDRISSPNTVMWNTMIRAYSNSNDP 92

Query: 167 EEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSI 226
           EE L  Y  +   SI  N ++F  +L  C  L  L  T Q+H Q++  GF S V  ++S+
Sbjct: 93  EEALLLYHQMLHHSIPHNAYTFPFLLKACSALSALAETHQIHVQIIKRGFGSEVYATNSL 152

Query: 227 VDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWT 286
           +  YA  G +  A  LFD   +RD+++W TM+ GY K G++E A K+F  MPEKN +SWT
Sbjct: 153 LRVYAISGSIKSAHVLFDLLPSRDIVSWNTMIDGYIKCGNVEMAYKIFQAMPEKNVISWT 212

Query: 287 TLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRT 346
           ++I G+ R G+ ++AL L  +M++  I+P++ T S  L ACA + +L+ GK +H ++ + 
Sbjct: 213 SMIVGFVRTGMHKEALCLLQQMLVAGIKPDKITLSCSLSACAGLGALEQGKWIHTYIGKN 272

Query: 347 NFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRL 406
             + + ++  +LIDMY KCG +     VF   + K+    W  +I     HG   +A+  
Sbjct: 273 KIKIDPVLGCALIDMYVKCGEMKKALLVFSKLE-KKCVYTWTAIIGGFAVHGKGSEALDW 331

Query: 407 FHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLA 466
           F  M ++ +KP   T   +L AC+H+GLV+EG + FESM+    + P  EH+ C+++LL 
Sbjct: 332 FTQMQKAGIKPTSFTFTAVLTACSHTGLVEEGKSLFESMSTFYNMKPVMEHYGCMVDLLG 391

Query: 467 QAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGL 526
           +AG   +    +E MP + ++ +W +L   C +H ++++G+++   LI+ +P+    +  
Sbjct: 392 RAGFLKEAKEFVESMPIKPNAAIWGSLLNACHLHKHLELGKEIGKFLIELDPEHDGRYIH 451

Query: 527 LSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSV 586
           L+SI++A G+     +VR  I  +        S I +    H F      HP    +Y +
Sbjct: 452 LASIHAAAGEWDEASQVRSHIKNKGLLNLPGCSTITLNGVAHEFFAGAEPHPHVREMYDM 511

Query: 587 LEQLAGQ 593
              +A +
Sbjct: 512 SNLIASR 518



 Score =  142 bits (359), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 92/396 (23%), Positives = 184/396 (46%), Gaps = 38/396 (9%)

Query: 10  INRKNLPNNCLIQSFLSLISKGQ-LSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSL 68
            +R + PN  +  + +   S      EA+     +    I   A T  F+L+ C+   +L
Sbjct: 68  FDRISSPNTVMWNTMIRAYSNSNDPEEALLLYHQMLHHSIPHNAYTFPFLLKACSALSAL 127

Query: 69  KLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSG 128
               ++H+ + + +      + +N L+ +Y   GS   A  +FD +P +++ S+N M+ G
Sbjct: 128 AETHQIHVQI-IKRGFGSEVYATNSLLRVYAISGSIKSAHVLFDLLPSRDIVSWNTMIDG 186

Query: 129 YANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSF 188
           Y   G ++ A  +F  M E++V+SW +MI+G+ ++G  +E L   + +    I  ++ + 
Sbjct: 187 YIKCGNVEMAYKIFQAMPEKNVISWTSMIVGFVRTGMHKEALCLLQQMLVAGIKPDKITL 246

Query: 189 AGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDA 248
           +  L+ C  L  L+  + +H  +       + V+  +++D Y KCGE+  A  +F + + 
Sbjct: 247 SCSLSACAGLGALEQGKWIHTYIGKNKIKIDPVLGCALIDMYVKCGEMKKALLVFSKLEK 306

Query: 249 RDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRM 308
           + V TWT ++ G+A                                +G G +AL+ FT+M
Sbjct: 307 KCVYTWTAIIGGFA-------------------------------VHGKGSEALDWFTQM 335

Query: 309 MILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVM---SSLIDMYSKC 365
               I+P   TF++ L AC+    ++ GK +  F   + F +   VM     ++D+  + 
Sbjct: 336 QKAGIKPTSFTFTAVLTACSHTGLVEEGKSL--FESMSTFYNMKPVMEHYGCMVDLLGRA 393

Query: 366 GCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDE 401
           G L + ++  +    K N+ +W ++++A   H + E
Sbjct: 394 GFLKEAKEFVESMPIKPNAAIWGSLLNACHLHKHLE 429


>gi|297738890|emb|CBI28135.3| unnamed protein product [Vitis vinifera]
          Length = 1974

 Score =  304 bits (778), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 162/532 (30%), Positives = 283/532 (53%), Gaps = 41/532 (7%)

Query: 102  GSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYA 161
            G    A  + + + + N+   +++++ Y+ +G+++ A  +F  M E+DVV+WN +I  Y 
Sbjct: 1397 GKQGHAIAILNSLDLDNILG-SSIINFYSKVGLIEDAELVFSRMLEKDVVTWNLLISSYV 1455

Query: 162  KSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVV 221
            +   V + L    ++R  ++  +  + + IL+       +KL ++ H   +     S+VV
Sbjct: 1456 QHHQVGKALNMCHLMRSENLRFDSVTLSSILSASAVTSNIKLGKEGHCYCIRRNLESDVV 1515

Query: 222  ISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMP--- 278
            +++SI+D YAKC  + DAR++FD T  RD++ W T+++ YA++G    A KLF +M    
Sbjct: 1516 VANSIIDMYAKCERIDDARKVFDSTTERDLVLWNTLLAAYAQVGLSGEALKLFYQMQFDS 1575

Query: 279  ------------------------------------EKNPVSWTTLIAGYTRNGLGQKAL 302
                                                + N ++WTTLI+G  ++G G +A+
Sbjct: 1576 VPPNVISWNSVILGFLRNGQVNEAKDMFSQMQSLGFQPNLITWTTLISGLAQSGFGYEAI 1635

Query: 303  ELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMY 362
              F +M    IRP+  + +S L AC  I SL +G+ +HGF+ R  F  +  V +SL+DMY
Sbjct: 1636 LFFQKMQEAGIRPSIASITSVLLACTDIPSLWYGRAIHGFITRHEFCLSVPVATSLVDMY 1695

Query: 363  SKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITL 422
            +KCG +++ ++VF +  +KE   ++N MISA   HG   +A+ LF  + +  ++PD IT 
Sbjct: 1696 AKCGSIDEAKKVFHMMSSKELP-IYNAMISAYALHGQAVEALALFKHLQKEGIEPDSITF 1754

Query: 423  AVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMP 482
              IL+AC+H+GLV EGL  F  M     + P  EH+ C++ LL++ G  D+ +  +  MP
Sbjct: 1755 TSILSACSHAGLVNEGLNLFADMVSKHNMNPIMEHYGCVVSLLSRCGNLDEALRLILTMP 1814

Query: 483  YEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEK 542
            ++ D+++  +L   CR H  I++G  +   L    P +S  +  LS+ Y+A G+   V  
Sbjct: 1815 FQPDAHILGSLLTACREHHEIELGEYLSKHLFKLEPSNSGNYVALSNAYAAAGRWVEVSN 1874

Query: 543  VRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQM 594
            +R L+  R  +K    SWI+   K++ F   D  HP  + +Y++L  L  +M
Sbjct: 1875 MRDLMKVRGLRKNPGCSWIQTGGKLNVFVAGDGSHPKTEEIYAMLAMLLSEM 1926



 Score =  179 bits (453), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 141/527 (26%), Positives = 231/527 (43%), Gaps = 104/527 (19%)

Query: 26   SLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLH-LKLTQRK 84
            SL   G L E++  L  +     ++  E    +LQ C   ++L  G+++H   LK     
Sbjct: 1148 SLCKDGHLQESVHLLSEMEFEDFQIGPEIYGELLQGCVYERALHTGQQIHARILKNGDFF 1207

Query: 85   TPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDN 144
                ++   L+  Y KC     A ++F ++ V+N+FS+  ++     +G  + A   F  
Sbjct: 1208 AKNEYVETKLVVFYAKCDFPEVAVRLFHRLRVRNVFSWAAIVGLQCRMGFSEDALLGFIE 1267

Query: 145  MAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLT 204
            M E  V                                 + F    +L  C  L+ + L 
Sbjct: 1268 MQENGVFP-------------------------------DNFVLPNVLKACGSLQLIGLG 1296

Query: 205  RQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKL 264
            + VHG VL  GF + V +SSS+VD Y KCG L DAR++FD    ++V+TW +M+ GY + 
Sbjct: 1297 KGVHGYVLKMGFGACVFVSSSLVDMYGKCGVLEDARKVFDSMVEKNVVTWNSMIVGYVQN 1356

Query: 265  GDMESASKLFNEM------PEKNPVS---------------------------------W 285
            G  + A  +F +M      P +  V+                                  
Sbjct: 1357 GLNQEAIDVFYDMRVEGIEPTRVTVASFLSASANLDALIEGKQGHAIAILNSLDLDNILG 1416

Query: 286  TTLIAGYTRNGLGQKALELFTRMM----------------------------ILR---IR 314
            +++I  Y++ GL + A  +F+RM+                            ++R   +R
Sbjct: 1417 SSIINFYSKVGLIEDAELVFSRMLEKDVVTWNLLISSYVQHHQVGKALNMCHLMRSENLR 1476

Query: 315  PNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQV 374
             +  T SS L A A   ++K GK+ H + IR N  S+ +V +S+IDMY+KC  ++D R+V
Sbjct: 1477 FDSVTLSSILSASAVTSNIKLGKEGHCYCIRRNLESDVVVANSIIDMYAKCERIDDARKV 1536

Query: 375  FDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGL 434
            FD T  ++  +LWNT+++A  Q G   +A++LF+ M   SV P+ I+   ++     +G 
Sbjct: 1537 FDSTTERD-LVLWNTLLAAYAQVGLSGEALKLFYQMQFDSVPPNVISWNSVILGFLRNGQ 1595

Query: 435  VQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKM 481
            V E    F  M   LG  PN      LI  LAQ+G   + +   +KM
Sbjct: 1596 VNEAKDMFSQM-QSLGFQPNLITWTTLISGLAQSGFGYEAILFFQKM 1641



 Score =  128 bits (322), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 88/345 (25%), Positives = 163/345 (47%), Gaps = 47/345 (13%)

Query: 8    RGINRKNLPNNCLIQSFLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKS 67
            R + +  +  N LI S+   +   Q+ +A++   L+    +R  + TL+ IL   A + +
Sbjct: 1438 RMLEKDVVTWNLLISSY---VQHHQVGKALNMCHLMRSENLRFDSVTLSSILSASAVTSN 1494

Query: 68   LKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLS 127
            +KLGK  H +  + +       ++N +I MY KC    DARKVFD    ++L  +N +L+
Sbjct: 1495 IKLGKEGHCYC-IRRNLESDVVVANSIIDMYAKCERIDDARKVFDSTTERDLVLWNTLLA 1553

Query: 128  GYANLGMMKHARNLFDNM----AERDVVSWNTMIIGYAKSGAVE---------------- 167
             YA +G+   A  LF  M       +V+SWN++I+G+ ++G V                 
Sbjct: 1554 AYAQVGLSGEALKLFYQMQFDSVPPNVISWNSVILGFLRNGQVNEAKDMFSQMQSLGFQP 1613

Query: 168  -------------------EGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVH 208
                               E + F++ ++   I  +  S   +L  C  +  L   R +H
Sbjct: 1614 NLITWTTLISGLAQSGFGYEAILFFQKMQEAGIRPSIASITSVLLACTDIPSLWYGRAIH 1673

Query: 209  GQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDME 268
            G +    F  +V +++S+VD YAKCG + +A+++F    ++++  +  M+S YA  G   
Sbjct: 1674 GFITRHEFCLSVPVATSLVDMYAKCGSIDEAKKVFHMMSSKELPIYNAMISAYALHGQAV 1733

Query: 269  SASKLFNEMP----EKNPVSWTTLIAGYTRNGLGQKALELFTRMM 309
             A  LF  +     E + +++T++++  +  GL  + L LF  M+
Sbjct: 1734 EALALFKHLQKEGIEPDSITFTSILSACSHAGLVNEGLNLFADMV 1778



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 35/152 (23%), Positives = 65/152 (42%), Gaps = 3/152 (1%)

Query: 289  IAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTN- 347
            I+   ++G  Q+++ L + M     +     +   L  C    +L  G+Q+H  +++   
Sbjct: 1146 ISSLCKDGHLQESVHLLSEMEFEDFQIGPEIYGELLQGCVYERALHTGQQIHARILKNGD 1205

Query: 348  -FRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRL 406
             F  N  V + L+  Y+KC       ++F     + N   W  ++    + G+ E A+  
Sbjct: 1206 FFAKNEYVETKLVVFYAKCDFPEVAVRLFHRLRVR-NVFSWAAIVGLQCRMGFSEDALLG 1264

Query: 407  FHDMVRSSVKPDKITLAVILNACTHSGLVQEG 438
            F +M  + V PD   L  +L AC    L+  G
Sbjct: 1265 FIEMQENGVFPDNFVLPNVLKACGSLQLIGLG 1296


>gi|296083752|emb|CBI23741.3| unnamed protein product [Vitis vinifera]
          Length = 545

 Score =  303 bits (777), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 148/447 (33%), Positives = 262/447 (58%), Gaps = 1/447 (0%)

Query: 125 MLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCN 184
           ++  YA      H+R +FD++  ++V  WN++I GYAK+    E  + +  +    +  +
Sbjct: 64  LIFAYAICQHPYHSRLVFDSLQHKNVFLWNSLINGYAKNRLYNEAFQLFNQMCSSDVLPD 123

Query: 185 EFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFD 244
           +F+ + +  +  +L  L   + +HG+ +  GF+S+ V+++SI+  Y KCG   ++R++FD
Sbjct: 124 DFTLSTLSKVSSELGALFSGKSIHGKSIRIGFVSDTVVANSIMSMYCKCGNFEESRKVFD 183

Query: 245 ETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALEL 304
           E   R+  +W  +++GYA  G++    ++F+ M  +N  SWT +I GY  NG   +AL L
Sbjct: 184 EMTIRNSGSWNVLIAGYAVSGNLVVGRRVFDRMKCRNVFSWTAMINGYVENGDSDEALSL 243

Query: 305 FTRMMILR-IRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYS 363
           F  M ++  I PN+ +  S L AC+S   L  G+Q+HGF +R    +   + ++LIDMYS
Sbjct: 244 FRDMQVIDGIEPNRVSLVSVLPACSSFSGLLSGRQIHGFAVRKELNNEVSLCNALIDMYS 303

Query: 364 KCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLA 423
           KCG L+  R+VF+     ++++ W++MIS    HG  ++AI L+  M+++ ++PD IT  
Sbjct: 304 KCGSLDSARRVFEDDSLCKDAISWSSMISGYGLHGKGQEAILLYDKMLQAGIRPDMITTV 363

Query: 424 VILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPY 483
            IL+AC+ SGLV EGL  + S+ +D GI P  E  AC++++L +AG  D  ++ ++ MP 
Sbjct: 364 GILSACSRSGLVNEGLNIYSSVINDYGIEPTLEIFACIVDMLGRAGQLDPALDFIKAMPV 423

Query: 484 EHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKV 543
           E    +W AL     IHG+++M       LI   P++ + +  +S++Y++  +   V +V
Sbjct: 424 EPGPSVWGALVSCSIIHGDLEMQELAYRFLIQLEPENPSNYVSISNLYASSRRWDAVAEV 483

Query: 544 RQLINERQFKKEQAISWIEIENKVHAF 570
           R+++ +++ +K    SWI I NK H F
Sbjct: 484 RRMMKDKRLRKVPGCSWISINNKTHCF 510



 Score =  145 bits (367), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 96/353 (27%), Positives = 171/353 (48%), Gaps = 36/353 (10%)

Query: 50  LPAE-TLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDAR 108
           LP + TL+ + +  +E  +L  GK +H    +       T ++N ++SMY KCG+  ++R
Sbjct: 121 LPDDFTLSTLSKVSSELGALFSGKSIHGK-SIRIGFVSDTVVANSIMSMYCKCGNFEESR 179

Query: 109 KVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEE 168
           KVFD++ ++N  S+N +++GYA  G +   R +FD M  R+V SW  MI GY ++G  +E
Sbjct: 180 KVFDEMTIRNSGSWNVLIAGYAVSGNLVVGRRVFDRMKCRNVFSWTAMINGYVENGDSDE 239

Query: 169 GLKFYKVLRRF-SISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIV 227
            L  ++ ++    I  N  S   +L  C     L   RQ+HG  +     + V + ++++
Sbjct: 240 ALSLFRDMQVIDGIEPNRVSLVSVLPACSSFSGLLSGRQIHGFAVRKELNNEVSLCNALI 299

Query: 228 DAYAKCGELSDARRLF-DETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWT 286
           D Y+KCG L  ARR+F D++  +D ++W++M+SGY                         
Sbjct: 300 DMYSKCGSLDSARRVFEDDSLCKDAISWSSMISGYG------------------------ 335

Query: 287 TLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRT 346
                   +G GQ+A+ L+ +M+   IRP+  T    L AC+    +  G  ++  +I  
Sbjct: 336 -------LHGKGQEAILLYDKMLQAGIRPDMITTVGILSACSRSGLVNEGLNIYSSVIND 388

Query: 347 NFRSNTI-VMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHG 398
                T+ + + ++DM  + G L+           +    +W  ++S    HG
Sbjct: 389 YGIEPTLEIFACIVDMLGRAGQLDPALDFIKAMPVEPGPSVWGALVSCSIIHG 441



 Score =  118 bits (296), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 94/374 (25%), Positives = 165/374 (44%), Gaps = 71/374 (18%)

Query: 192 LTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDV 251
           L   V  + LKLTRQ H ++L  G   N ++++ ++ AYA C     +R +FD    ++V
Sbjct: 30  LHFSVTHKSLKLTRQSHSRILSLGLSQNSLLATKLIFAYAICQHPYHSRLVFDSLQHKNV 89

Query: 252 LTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMIL 311
             W ++++GYAK       ++L+NE                        A +LF +M   
Sbjct: 90  FLWNSLINGYAK-------NRLYNE------------------------AFQLFNQMCSS 118

Query: 312 RIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDG 371
            + P+  T S+     + + +L  GK +HG  IR  F S+T+V +S++ MY KCG   + 
Sbjct: 119 DVLPDDFTLSTLSKVSSELGALFSGKSIHGKSIRIGFVSDTVVANSIMSMYCKCGNFEES 178

Query: 372 RQVFDLTDNK------------------------------ENSMLWNTMISALTQHGYDE 401
           R+VFD    +                               N   W  MI+   ++G  +
Sbjct: 179 RKVFDEMTIRNSGSWNVLIAGYAVSGNLVVGRRVFDRMKCRNVFSWTAMINGYVENGDSD 238

Query: 402 QAIRLFHDM-VRSSVKPDKITLAVILNAC-THSGLVQEGLTYFESMTHDLGIIPNQEHHA 459
           +A+ LF DM V   ++P++++L  +L AC + SGL+     +  ++  +L    N E   
Sbjct: 239 EALSLFRDMQVIDGIEPNRVSLVSVLPACSSFSGLLSGRQIHGFAVRKEL----NNEVSL 294

Query: 460 C--LIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQN 517
           C  LI++ ++ G  D      E      D+  W+++     +HG       + D+++   
Sbjct: 295 CNALIDMYSKCGSLDSARRVFEDDSLCKDAISWSSMISGYGLHGKGQEAILLYDKMLQAG 354

Query: 518 --PQSSATHGLLSS 529
             P    T G+LS+
Sbjct: 355 IRPDMITTVGILSA 368


>gi|359497798|ref|XP_003635646.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like, partial [Vitis vinifera]
          Length = 809

 Score =  303 bits (777), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 177/594 (29%), Positives = 300/594 (50%), Gaps = 65/594 (10%)

Query: 15  LPNNCLIQSFLSLISKGQLSEAISSLDLLAQRGIR--LPAE-TLAFILQQCAESKSLKLG 71
           +P   L+   L +    QL  A  ++DL     +   +P   T + +L  C E   L LG
Sbjct: 191 MPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTELGLLALG 250

Query: 72  KRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYAN 131
           K++H  + +         +   L+ MY KC +D                           
Sbjct: 251 KQLHSRV-IRLGLALDVCVGCSLVDMYAKCAAD--------------------------- 282

Query: 132 LGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVE-EGLKFYKVLRRFSISCNEFSFAG 190
            G +  +R +F+ M E +V+SW  +I  Y +SG  + E ++ +  +    I  N FSF+ 
Sbjct: 283 -GSVDDSRKVFEQMPEHNVMSWTAIITAYVQSGECDKEAIELFCKMISGHIRPNHFSFSS 341

Query: 191 ILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARD 250
           +L  C  L +     QV+   +  G  S   + +S                         
Sbjct: 342 VLKACGNLSDPYTGEQVYSYAVKLGIASVNCVGNS------------------------- 376

Query: 251 VLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMI 310
                 ++S YA+ G ME A K F+ + EKN VS+  ++ GY +N   ++A  LF  +  
Sbjct: 377 ------LISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIAD 430

Query: 311 LRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLND 370
             I  +  TF+S L   ASI ++  G+Q+HG L++  ++SN  + ++LI MYS+CG +  
Sbjct: 431 TGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALISMYSRCGNIEA 490

Query: 371 GRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACT 430
             QVF+  +++ N + W +MI+   +HG+  +A+ +FH M+ +  KP++IT   +L+AC+
Sbjct: 491 AFQVFNEMEDR-NVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEITYVAVLSACS 549

Query: 431 HSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLW 490
           H G++ EG  +F SM  + GI+P  EH+AC+++LL ++G   + M  +  MP   D+ +W
Sbjct: 550 HVGMISEGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSMPLMADALVW 609

Query: 491 NALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINER 550
             L G CR+HGN ++GR   + +++Q P   A + LLS+++++ G+ + V K+R+ + ER
Sbjct: 610 RTLLGACRVHGNTELGRHAAEMILEQEPDDPAAYILLSNLHASAGQWKDVVKIRKSMKER 669

Query: 551 QFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQMGEDAPSLDAD 604
              KE   SWIE+EN+VH F V ++ HP    +Y  L+QLA ++ E     D D
Sbjct: 670 NLIKEAGCSWIEVENRVHRFHVGETSHPQAWQIYQELDQLASKIKEMGYIPDTD 723



 Score =  167 bits (423), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 113/405 (27%), Positives = 192/405 (47%), Gaps = 69/405 (17%)

Query: 31  GQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFL 90
           G+L  A S+LDL+ Q+       T + +L+ C   ++ +LGK VH  L  +  +  +  L
Sbjct: 5   GRLHHAFSTLDLMTQQNAPPDLTTYSILLKSCIRFRNFQLGKLVHRKLMQSGLELDSVVL 64

Query: 91  SNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMA-ERD 149
            N LIS+Y KCG                                 + AR +F+ M  +RD
Sbjct: 65  -NTLISLYSKCGD-------------------------------TETARLIFEGMGNKRD 92

Query: 150 VVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHG 209
           +VSW+ M+  +A +    + +  +  +       NE+ FA ++  C       +   ++G
Sbjct: 93  LVSWSAMVSCFANNSMEWQAIWTFLDMLELGFYPNEYCFAAVIRACSNANYAWVGEIIYG 152

Query: 210 QVLVTGFL-SNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDME 268
            V+ TG+L ++V +   ++D + K                                GD+ 
Sbjct: 153 FVVKTGYLEADVCVGCELIDMFVKGS------------------------------GDLG 182

Query: 269 SASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACA 328
           SA K+F++MPE+N V+WT +I  + + G  + A++LF  M +    P++ T+SS L AC 
Sbjct: 183 SAYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACT 242

Query: 329 SIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKC---GCLNDGRQVFDLTDNKENSM 385
            +  L  GKQ+H  +IR     +  V  SL+DMY+KC   G ++D R+VF+    + N M
Sbjct: 243 ELGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMP-EHNVM 301

Query: 386 LWNTMISALTQHGY-DEQAIRLFHDMVRSSVKPDKITLAVILNAC 429
            W  +I+A  Q G  D++AI LF  M+   ++P+  + + +L AC
Sbjct: 302 SWTAIITAYVQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKAC 346



 Score =  115 bits (289), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 84/313 (26%), Positives = 151/313 (48%), Gaps = 40/313 (12%)

Query: 187 SFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDET 246
           +++ +L  C++    +L + VH +++ +G   + V+ ++++  Y+KCG+   AR +F+  
Sbjct: 28  TYSILLKSCIRFRNFQLGKLVHRKLMQSGLELDSVVLNTLISLYSKCGDTETARLIFEGM 87

Query: 247 -DARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELF 305
            + RD+++W+ MVS +A                  N + W              +A+  F
Sbjct: 88  GNKRDLVSWSAMVSCFA-----------------NNSMEW--------------QAIWTF 116

Query: 306 TRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNF-RSNTIVMSSLIDMYSK 364
             M+ L   PN++ F++ + AC++      G+ ++GF+++T +  ++  V   LIDM+ K
Sbjct: 117 LDMLELGFYPNEYCFAAVIRACSNANYAWVGEIIYGFVVKTGYLEADVCVGCELIDMFVK 176

Query: 365 -CGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLA 423
             G L    +VFD    + N + W  MI+   Q G    AI LF DM  S   PD+ T +
Sbjct: 177 GSGDLGSAYKVFDKMPER-NLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYS 235

Query: 424 VILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQA---GCSDQLMNQLEK 480
            +L+ACT  GL+  G     S    LG+  +      L+++ A+    G  D      E+
Sbjct: 236 SVLSACTELGLLALG-KQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQ 294

Query: 481 MPYEHDSYLWNAL 493
           MP EH+   W A+
Sbjct: 295 MP-EHNVMSWTAI 306



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 36/124 (29%), Positives = 67/124 (54%)

Query: 315 PNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQV 374
           P+  T+S  L +C    + + GK VH  L+++    +++V+++LI +YSKCG     R +
Sbjct: 24  PDLTTYSILLKSCIRFRNFQLGKLVHRKLMQSGLELDSVVLNTLISLYSKCGDTETARLI 83

Query: 375 FDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGL 434
           F+   NK + + W+ M+S    +  + QAI  F DM+     P++   A ++ AC+++  
Sbjct: 84  FEGMGNKRDLVSWSAMVSCFANNSMEWQAIWTFLDMLELGFYPNEYCFAAVIRACSNANY 143

Query: 435 VQEG 438
              G
Sbjct: 144 AWVG 147


>gi|225436612|ref|XP_002275537.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g27110-like [Vitis vinifera]
          Length = 694

 Score =  303 bits (777), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 168/565 (29%), Positives = 288/565 (50%), Gaps = 65/565 (11%)

Query: 31  GQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFL 90
           GQ  +A+   + +   G +  + TL  ++  CA    L+ GK +H+ L +        F+
Sbjct: 186 GQPEKALELFEEMKVSGFKPDSVTLTTVISSCARLLDLERGKEIHMEL-VRSGFALDGFV 244

Query: 91  SNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDV 150
           S+ L+ MY KCG                                ++ A+ +F+ +  ++V
Sbjct: 245 SSALVDMYGKCGC-------------------------------LEMAKEVFEQIQRKNV 273

Query: 151 VSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQ 210
           VSWN+MI GY+  G  +  ++ ++ +    I     + + IL  C +   L+L + +HG 
Sbjct: 274 VSWNSMIAGYSLKGDSKSCIELFRRMDEEGIRPTLTTLSSILMACSRSVNLQLGKFIHGY 333

Query: 211 VLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESA 270
           ++     +++ ++SS++D Y KC                               G++ SA
Sbjct: 334 IIRNRVEADIFVNSSLIDLYFKC-------------------------------GNIGSA 362

Query: 271 SKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASI 330
             +F  MP+ N VSW  +I+GY + G   +AL +FT M    ++P+  TF+S L AC+ +
Sbjct: 363 ENVFQNMPKTNVVSWNVMISGYVKVGSYLEALVIFTDMRKAGVKPDAITFTSVLPACSQL 422

Query: 331 VSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTM 390
             L+ GK++H F+I +    N +VM +L+DMY+KCG +++   +F+    + + + W +M
Sbjct: 423 AVLEKGKEIHNFIIESKLEINEVVMGALLDMYAKCGAVDEALHIFNQLPER-DFVSWTSM 481

Query: 391 ISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLG 450
           I+A   HG   +A++LF  M +S  KPDK+T   IL+AC+H+GLV EG  YF  M  + G
Sbjct: 482 IAAYGSHGQAFEALKLFEKMQQSDAKPDKVTFLAILSACSHAGLVDEGCYYFNQMIAEYG 541

Query: 451 IIPNQEHHACLIELLAQAGCSDQLMNQLEKMP-YEHDSYLWNALHGVCRIHGNIDMGRKV 509
             P  EH++CLI+LL + G   +    L++ P    D  L + L   C +H  +D+G ++
Sbjct: 542 FKPAVEHYSCLIDLLGRVGRLREAYEILQRTPDIREDVGLLSTLFSACHLHKKLDLGEQI 601

Query: 510 VDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHA 569
              LI+++P   +T+ +LS++Y+++ K   V KVR  I E   KK    SWIE+  ++H 
Sbjct: 602 GRLLIEKDPDDPSTYIILSNMYASVKKWDEVRKVRLKIKELGLKKNPGCSWIEVGKRIHP 661

Query: 570 FSVSDSLHPMRDVLYSVLEQLAGQM 594
           F V D  HP  D++Y  +  LA  +
Sbjct: 662 FVVEDKSHPQADMIYECMSILASHV 686



 Score =  198 bits (503), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 122/429 (28%), Positives = 213/429 (49%), Gaps = 40/429 (9%)

Query: 129 YANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSF 188
           YA   + + A  LFD M ERDV SWN +I  Y + G  E+ L+ ++ ++      +  + 
Sbjct: 151 YAKCNVFEDAIKLFDEMPERDVASWNNVISCYYQDGQPEKALELFEEMKVSGFKPDSVTL 210

Query: 189 AGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDA 248
             +++ C +L +L+  +++H +++ +GF  +  +SS++VD Y KCG L  A+ +F++   
Sbjct: 211 TTVISSCARLLDLERGKEIHMELVRSGFALDGFVSSALVDMYGKCGCLEMAKEVFEQIQR 270

Query: 249 RDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRM 308
           ++V++W +M++GY+  GD +S  +LF  M E+                            
Sbjct: 271 KNVVSWNSMIAGYSLKGDSKSCIELFRRMDEEG--------------------------- 303

Query: 309 MILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCL 368
               IRP   T SS L AC+  V+L+ GK +HG++IR    ++  V SSLID+Y KCG +
Sbjct: 304 ----IRPTLTTLSSILMACSRSVNLQLGKFIHGYIIRNRVEADIFVNSSLIDLYFKCGNI 359

Query: 369 NDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNA 428
                VF     K N + WN MIS   + G   +A+ +F DM ++ VKPD IT   +L A
Sbjct: 360 GSAENVFQ-NMPKTNVVSWNVMISGYVKVGSYLEALVIFTDMRKAGVKPDAITFTSVLPA 418

Query: 429 CTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSY 488
           C+   ++++G     +   +  +  N+     L+++ A+ G  D+ ++   ++P E D  
Sbjct: 419 CSQLAVLEKG-KEIHNFIIESKLEINEVVMGALLDMYAKCGAVDEALHIFNQLP-ERDFV 476

Query: 489 LWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEK----VR 544
            W ++      HG      K+ +++  Q   +        +I SA     LV++      
Sbjct: 477 SWTSMIAAYGSHGQAFEALKLFEKM--QQSDAKPDKVTFLAILSACSHAGLVDEGCYYFN 534

Query: 545 QLINERQFK 553
           Q+I E  FK
Sbjct: 535 QMIAEYGFK 543



 Score =  169 bits (429), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 142/543 (26%), Positives = 243/543 (44%), Gaps = 92/543 (16%)

Query: 58  ILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVK 117
           +L+ C +SK LK GK +H  +     +   T L   LI++YF C     A+ VF  I   
Sbjct: 9   LLKTCIDSKYLKQGKLIHQKIVSLGLQNNIT-LCKSLINLYFSCHLFQSAKLVFQTI--- 64

Query: 118 NLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLK-FYKVL 176
                 N L                      D+  WN ++    K+    EGL+ F+++L
Sbjct: 65  -----ENPL----------------------DITLWNGLMAACTKNFIFIEGLEVFHRLL 97

Query: 177 RRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGEL 236
               +  + F++  +L  C  L  +   + VH  V+ +GF                    
Sbjct: 98  HFPYLKPDAFTYPSVLKACSGLGRVGYGKMVHTHVIKSGF-------------------- 137

Query: 237 SDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNG 296
                      A DV+  ++ V  YAK    E A KLF+EMPE++  SW  +I+ Y ++G
Sbjct: 138 -----------AMDVVVMSSAVGMYAKCNVFEDAIKLFDEMPERDVASWNNVISCYYQDG 186

Query: 297 LGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMS 356
             +KALELF  M +   +P+  T ++ + +CA ++ L+ GK++H  L+R+ F  +  V S
Sbjct: 187 QPEKALELFEEMKVSGFKPDSVTLTTVISSCARLLDLERGKEIHMELVRSGFALDGFVSS 246

Query: 357 SLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVK 416
           +L+DMY KCGCL   ++VF+    K N + WN+MI+  +  G  +  I LF  M    ++
Sbjct: 247 ALVDMYGKCGCLEMAKEVFEQIQRK-NVVSWNSMIAGYSLKGDSKSCIELFRRMDEEGIR 305

Query: 417 PDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEH-----HACLIELLAQAGCS 471
           P   TL+ IL AC+ S  +Q G        H   II N+       ++ LI+L  + G  
Sbjct: 306 PTLTTLSSILMACSRSVNLQLG-----KFIHGY-IIRNRVEADIFVNSSLIDLYFKCGNI 359

Query: 472 DQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHG---LLS 528
               N  + MP + +   WN +     I G + +G  +   +I  + + +         +
Sbjct: 360 GSAENVFQNMP-KTNVVSWNVM-----ISGYVKVGSYLEALVIFTDMRKAGVKPDAITFT 413

Query: 529 SIYSALGKGRLVEKVRQLIN---ERQFKKEQAISWIEIENKVHAFSVSDSLH-----PMR 580
           S+  A  +  ++EK +++ N   E + +  + +    ++      +V ++LH     P R
Sbjct: 414 SVLPACSQLAVLEKGKEIHNFIIESKLEINEVVMGALLDMYAKCGAVDEALHIFNQLPER 473

Query: 581 DVL 583
           D +
Sbjct: 474 DFV 476



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 101/391 (25%), Positives = 174/391 (44%), Gaps = 69/391 (17%)

Query: 10  INRKNLPN-NCLIQSFLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSL 68
           I RKN+ + N +I  + SL  KG     I     + + GIR    TL+ IL  C+ S +L
Sbjct: 268 IQRKNVVSWNSMIAGY-SL--KGDSKSCIELFRRMDEEGIRPTLTTLSSILMACSRSVNL 324

Query: 69  KLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSG 128
           +LGK +H ++ +  R     F+++ LI +YFKCG+   A  VF  +P  N+ S+N M+SG
Sbjct: 325 QLGKFIHGYI-IRNRVEADIFVNSSLIDLYFKCGNIGSAENVFQNMPKTNVVSWNVMISG 383

Query: 129 YANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSF 188
           Y  +G    A  +F +M                               R+  +  +  +F
Sbjct: 384 YVKVGSYLEALVIFTDM-------------------------------RKAGVKPDAITF 412

Query: 189 AGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDA 248
             +L  C +L  L+  +++H  ++ +    N V+  +++D YAKCG + +A  +F++   
Sbjct: 413 TSVLPACSQLAVLEKGKEIHNFIIESKLEINEVVMGALLDMYAKCGAVDEALHIFNQLPE 472

Query: 249 RDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRM 308
           RD ++WT+M++ Y   G    A KLF +M + +                           
Sbjct: 473 RDFVSWTSMIAAYGSHGQAFEALKLFEKMQQSDA-------------------------- 506

Query: 309 MILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLI-RTNFRSNTIVMSSLIDMYSKCGC 367
                +P++ TF + L AC+    +  G      +I    F+      S LID+  + G 
Sbjct: 507 -----KPDKVTFLAILSACSHAGLVDEGCYYFNQMIAEYGFKPAVEHYSCLIDLLGRVGR 561

Query: 368 LNDGRQVFDLT-DNKENSMLWNTMISALTQH 397
           L +  ++   T D +E+  L +T+ SA   H
Sbjct: 562 LREAYEILQRTPDIREDVGLLSTLFSACHLH 592


>gi|359482004|ref|XP_002276764.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g01510-like [Vitis vinifera]
          Length = 681

 Score =  303 bits (777), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 185/587 (31%), Positives = 295/587 (50%), Gaps = 47/587 (8%)

Query: 16  PNNCLIQSFLSLISK-GQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRV 74
           P   L    +++ SK G+L  A+   D + QR +      ++ + Q    S+++    R 
Sbjct: 38  PCTFLTNHLVNMYSKCGELDHALKLFDTMPQRNLVSWTAMISGLSQNSKFSEAI----RT 93

Query: 75  HLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVK-----NLFSYNNMLSGY 129
              +++   + PT F  +  I      GS ++  K    + +K      LF  +N+   Y
Sbjct: 94  FCGMRICG-EVPTQFAFSSAIRACASLGS-IEMGKQMHCLALKFGIGSELFVGSNLEDMY 151

Query: 130 ANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFA 189
           +  G M  A  +F+ M  +D VSW  MI GY+K G  EE L  +K +    ++ ++    
Sbjct: 152 SKCGAMFDACKVFEEMPCKDEVSWTAMIDGYSKIGEFEEALLAFKKMIDEEVTIDQHVLC 211

Query: 190 GILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDAR 249
             L  C  L+  K  R VH  V+  GF S++ + +++ D Y+K                 
Sbjct: 212 STLGACGALKACKFGRSVHSSVVKLGFESDIFVGNALTDMYSKA---------------- 255

Query: 250 DVLTWTTMVSGYAKLGDMESASKLFNEMPE-KNPVSWTTLIAGYTRNGLGQKALELFTRM 308
                          GDMESAS +F    E +N VS+T LI GY      +K L +F  +
Sbjct: 256 ---------------GDMESASNVFGIDSECRNVVSYTCLIDGYVETEQIEKGLSVFVEL 300

Query: 309 MILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCL 368
               I PN+ TFSS + ACA+  +L+ G Q+H  +++ NF  +  V S L+DMY KCG L
Sbjct: 301 RRQGIEPNEFTFSSLIKACANQAALEQGTQLHAQVMKINFDEDPFVSSILVDMYGKCGLL 360

Query: 369 NDGRQVFD-LTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILN 427
               Q FD + D  E  + WN+++S   QHG  + AI++F  MV   VKP+ IT   +L 
Sbjct: 361 EQAIQAFDEIGDPTE--IAWNSLVSVFGQHGLGKDAIKIFERMVDRGVKPNAITFISLLT 418

Query: 428 ACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDS 487
            C+H+GLV+EGL YF SM    G++P +EH++C+I+LL +AG   +    + +MP+E ++
Sbjct: 419 GCSHAGLVEEGLDYFYSMDKTYGVVPGEEHYSCVIDLLGRAGRLKEAKEFINRMPFEPNA 478

Query: 488 YLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLI 547
           + W +  G CRIHG+ +MG+   ++L+   P++S    LLS+IY+   +   V  VR  +
Sbjct: 479 FGWCSFLGACRIHGDKEMGKLAAEKLVKLEPKNSGALVLLSNIYANERQWEDVRSVRMRM 538

Query: 548 NERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQM 594
            +   KK    SW+++  K H F   D  HP +  +Y  L+ L  Q+
Sbjct: 539 RDGNVKKLPGYSWVDVGYKTHVFGAEDWSHPRKSAIYEKLDTLLDQI 585



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 100/401 (24%), Positives = 177/401 (44%), Gaps = 76/401 (18%)

Query: 187 SFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDET 246
           + A ++    K + L+  +Q+H  ++  G+     +++ +V+ Y+KCGEL  A +LFD  
Sbjct: 7   ALAHVIQTYAKTKRLRRGKQLHALLICAGYTPCTFLTNHLVNMYSKCGELDHALKLFDTM 66

Query: 247 DARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFT 306
             R++++WT M+S                               G ++N    +A+  F 
Sbjct: 67  PQRNLVSWTAMIS-------------------------------GLSQNSKFSEAIRTFC 95

Query: 307 RMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCG 366
            M I    P Q  FSS + ACAS+ S++ GKQ+H   ++    S   V S+L DMYSKCG
Sbjct: 96  GMRICGEVPTQFAFSSAIRACASLGSIEMGKQMHCLALKFGIGSELFVGSNLEDMYSKCG 155

Query: 367 CLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVIL 426
            + D  +VF+    K+  + W  MI   ++ G  E+A+  F  M+   V  D+  L   L
Sbjct: 156 AMFDACKVFEEMPCKDE-VSWTAMIDGYSKIGEFEEALLAFKKMIDEEVTIDQHVLCSTL 214

Query: 427 NAC-----------THSGLVQEGLTY-----------------FESMTHDLGI---IPNQ 455
            AC            HS +V+ G                     ES ++  GI     N 
Sbjct: 215 GACGALKACKFGRSVHSSVVKLGFESDIFVGNALTDMYSKAGDMESASNVFGIDSECRNV 274

Query: 456 EHHACLIELLAQAGCSDQLMN---QLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQ 512
             + CLI+   +    ++ ++   +L +   E + + +++L   C     ++ G ++  Q
Sbjct: 275 VSYTCLIDGYVETEQIEKGLSVFVELRRQGIEPNEFTFSSLIKACANQAALEQGTQLHAQ 334

Query: 513 LI----DQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINE 549
           ++    D++P  S+   +L  +Y   GK  L+E+  Q  +E
Sbjct: 335 VMKINFDEDPFVSS---ILVDMY---GKCGLLEQAIQAFDE 369


>gi|168045266|ref|XP_001775099.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162673550|gb|EDQ60071.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 804

 Score =  303 bits (777), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 184/654 (28%), Positives = 311/654 (47%), Gaps = 106/654 (16%)

Query: 11  NRKNLPNNCLIQSFLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKL 70
           N+  +  N +I  +     +G   EA +   L+ Q  +     T   IL  C+    L  
Sbjct: 91  NKSVVSWNVMISGY---AHRGLAQEAFNLFTLMQQERLEPDKFTFVSILSACSSPAVLNW 147

Query: 71  GKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYA 130
           G+ +H+ +        TT + N LISMY KC                             
Sbjct: 148 GREIHVRVMEAGLANDTT-VGNALISMYAKC----------------------------- 177

Query: 131 NLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAG 190
             G ++ AR +FD MA RD VSW T+   YA+SG  EE LK Y  + +  +  +  ++  
Sbjct: 178 --GSVRDARRVFDAMASRDEVSWTTLTGAYAESGYGEESLKTYHAMLQERVRPSRITYMN 235

Query: 191 ILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDAR---------- 240
           +L+ C  L  L+  +Q+H  ++ + + S+V +S+++   Y KCG   DAR          
Sbjct: 236 VLSACGSLAALEKGKQIHAHIVESEYHSDVRVSTALTKMYMKCGAFKDAREVFECLSYRD 295

Query: 241 -------------------------RLFDETDARDVLTWTTMVSG--------------- 260
                                    R+ +E  A D  T+TT++S                
Sbjct: 296 VIAWNTMIRGFVDSGQLEEAHGTFHRMLEEGVAPDRATYTTVLSACARPGGLARGKEIHA 355

Query: 261 --------------------YAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQK 300
                               Y+K G M+ A ++F+ MP+++ VSWTTL+  Y       +
Sbjct: 356 RAAKDGLVSDVRFGNALINMYSKAGSMKDARQVFDRMPKRDVVSWTTLLGRYADCDQVVE 415

Query: 301 ALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLID 360
           +   F +M+   ++ N+ T+   L AC++ V+LK GK++H  +++    ++  V ++L+ 
Sbjct: 416 SFTTFKQMLQQGVKANKITYMCVLKACSNPVALKWGKEIHAEVVKAGLLADLAVTNALMS 475

Query: 361 MYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKI 420
           MY KCG + D  +VF+    + + + WNT+I  L Q+G   +A++ +  M    ++P+  
Sbjct: 476 MYFKCGSVEDAIRVFEGMSMR-DVVTWNTLIGGLGQNGRGLEALQRYEVMKSEGMRPNAA 534

Query: 421 TLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEK 480
           T   +L+AC    LV+EG   F  M+ D GI+P ++H+AC++++LA+AG   +  + +  
Sbjct: 535 TFVNVLSACRVCNLVEEGRRQFAFMSKDYGIVPTEKHYACMVDILARAGHLREAEDVILT 594

Query: 481 MPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLV 540
           +P +  + +W AL   CRIH N+++G +  +  +   PQ++  +  LS+IY+A G  R V
Sbjct: 595 IPLKPSAAMWGALLAACRIHCNVEIGERAAEHCLKLEPQNAGLYVSLSAIYAAAGMWRDV 654

Query: 541 EKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQM 594
            K+R+ + ER  KKE   SWIEI  +VH+F   D  HP    +Y+ LE L  QM
Sbjct: 655 AKLRKFMKERGVKKEPGRSWIEIAGEVHSFVARDQSHPRTQEIYAELETLKKQM 708



 Score =  217 bits (553), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 124/456 (27%), Positives = 214/456 (46%), Gaps = 66/456 (14%)

Query: 40  LDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYF 99
           L  L ++G ++ +     +LQ C ++K L +GK+VH H+                     
Sbjct: 16  LQYLHRKGPQVDSYDYVKLLQSCVKAKDLAVGKQVHEHI--------------------L 55

Query: 100 KCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIG 159
           +CG               N++  N +L  YA+ G +  AR LFD  + + VVSWN MI G
Sbjct: 56  RCGVK------------PNVYITNTLLKLYAHCGSVNEARQLFDKFSNKSVVSWNVMISG 103

Query: 160 YAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSN 219
           YA  G  +E    + ++++  +  ++F+F  IL+ C     L   R++H +V+  G  ++
Sbjct: 104 YAHRGLAQEAFNLFTLMQQERLEPDKFTFVSILSACSSPAVLNWGREIHVRVMEAGLAND 163

Query: 220 VVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPE 279
             + ++                               ++S YAK G +  A ++F+ M  
Sbjct: 164 TTVGNA-------------------------------LISMYAKCGSVRDARRVFDAMAS 192

Query: 280 KNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQV 339
           ++ VSWTTL   Y  +G G+++L+ +  M+  R+RP++ T+ + L AC S+ +L+ GKQ+
Sbjct: 193 RDEVSWTTLTGAYAESGYGEESLKTYHAMLQERVRPSRITYMNVLSACGSLAALEKGKQI 252

Query: 340 HGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGY 399
           H  ++ + + S+  V ++L  MY KCG   D R+VF+    + + + WNTMI      G 
Sbjct: 253 HAHIVESEYHSDVRVSTALTKMYMKCGAFKDAREVFECLSYR-DVIAWNTMIRGFVDSGQ 311

Query: 400 DEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHA 459
            E+A   FH M+   V PD+ T   +L+AC   G +  G         D G++ +     
Sbjct: 312 LEEAHGTFHRMLEEGVAPDRATYTTVLSACARPGGLARGKEIHARAAKD-GLVSDVRFGN 370

Query: 460 CLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHG 495
            LI + ++AG         ++MP + D   W  L G
Sbjct: 371 ALINMYSKAGSMKDARQVFDRMP-KRDVVSWTTLLG 405



 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 94/340 (27%), Positives = 164/340 (48%), Gaps = 51/340 (15%)

Query: 174 KVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKC 233
           + L R     + + +  +L  CVK ++L + +QVH  +L  G   NV I+++++  YA C
Sbjct: 17  QYLHRKGPQVDSYDYVKLLQSCVKAKDLAVGKQVHEHILRCGVKPNVYITNTLLKLYAHC 76

Query: 234 GELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYT 293
           G +++AR                               +LF++   K+ VSW  +I+GY 
Sbjct: 77  GSVNEAR-------------------------------QLFDKFSNKSVVSWNVMISGYA 105

Query: 294 RNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTI 353
             GL Q+A  LFT M   R+ P++ TF S L AC+S   L  G+++H  ++     ++T 
Sbjct: 106 HRGLAQEAFNLFTLMQQERLEPDKFTFVSILSACSSPAVLNWGREIHVRVMEAGLANDTT 165

Query: 354 VMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRS 413
           V ++LI MY+KCG + D R+VFD   +++  + W T+  A  + GY E++++ +H M++ 
Sbjct: 166 VGNALISMYAKCGSVRDARRVFDAMASRDE-VSWTTLTGAYAESGYGEESLKTYHAMLQE 224

Query: 414 SVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHA------CLIELLAQ 467
            V+P +IT   +L+AC     +++G             I   E+H+       L ++  +
Sbjct: 225 RVRPSRITYMNVLSACGSLAALEKGKQIHAH-------IVESEYHSDVRVSTALTKMYMK 277

Query: 468 AGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGR 507
            G         E + Y  D   WN +     I G +D G+
Sbjct: 278 CGAFKDAREVFECLSYR-DVIAWNTM-----IRGFVDSGQ 311



 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 59/231 (25%), Positives = 103/231 (44%), Gaps = 5/231 (2%)

Query: 316 NQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVF 375
           + + +   L +C     L  GKQVH  ++R   + N  + ++L+ +Y+ CG +N+ RQ+F
Sbjct: 27  DSYDYVKLLQSCVKAKDLAVGKQVHEHILRCGVKPNVYITNTLLKLYAHCGSVNEARQLF 86

Query: 376 DLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLV 435
           D   NK + + WN MIS     G  ++A  LF  M +  ++PDK T   IL+AC+   ++
Sbjct: 87  DKFSNK-SVVSWNVMISGYAHRGLAQEAFNLFTLMQQERLEPDKFTFVSILSACSSPAVL 145

Query: 436 QEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHG 495
             G         + G+  +      LI + A+ G         + M    D   W  L G
Sbjct: 146 NWGRE-IHVRVMEAGLANDTTVGNALISMYAKCGSVRDARRVFDAMA-SRDEVSWTTLTG 203

Query: 496 VCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQL 546
                G  +   K    ++ +  + S    +  ++ SA G    +EK +Q+
Sbjct: 204 AYAESGYGEESLKTYHAMLQERVRPSRITYM--NVLSACGSLAALEKGKQI 252


>gi|345505228|gb|AEN99838.1| chlororespiratory reduction 4, partial [Matthiola incana]
          Length = 584

 Score =  303 bits (777), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 173/534 (32%), Positives = 283/534 (52%), Gaps = 43/534 (8%)

Query: 42  LLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKC 101
           L+ +  + +   +++ +L+ C+    +  G +VH  L+ T   +   FL N LI +Y KC
Sbjct: 83  LMIENSVSVDKFSISLVLKACSRLGFVDFGMQVHGFLRKTGIYS-DLFLQNCLIGLYLKC 141

Query: 102 GSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMA--ERDVVSWNTMIIG 159
           G    AR+VFD++P ++  SYN+M+ GY   G+++ AR LFD M   +++++SWN MI G
Sbjct: 142 GCLGFARQVFDRMPQRDSVSYNSMIDGYVKCGLIESARELFDLMPREKKNLISWNCMISG 201

Query: 160 YAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSN 219
           Y +S   E+G+                               KL  ++  + L++     
Sbjct: 202 YTQS---EDGVNVAS---------------------------KLFDEMPEKDLISW---- 227

Query: 220 VVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPE 279
               +S++D Y K   + DA+ LFD    +DV+TW TM+ GYAKLG +  A KLF+EMP+
Sbjct: 228 ----NSLIDGYVKHRRIEDAKSLFDLMPRKDVVTWATMIDGYAKLGFVHQAKKLFDEMPQ 283

Query: 280 KNPVSWTTLIAGYTRNGLGQKALELFTRM-MILRIRPNQHTFSSCLCACASIVSLKHGKQ 338
           ++ V++ +++AGY +N    +A+ +F  M     + P++ T    L A A +  L     
Sbjct: 284 RDVVAYNSMMAGYVQNKYHAEAIGIFNDMEKESHLSPDETTLVIVLSAIAQLGRLSKAVD 343

Query: 339 VHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHG 398
           +H +++   FR    +  +LID YSKCG +    +VF+  +NK     WN MI  L  HG
Sbjct: 344 IHLYIMDNKFRLGGKLGVALIDTYSKCGSIQKSMRVFEEIENKSIDH-WNAMIGGLAIHG 402

Query: 399 YDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHH 458
             E A  +   + + S+KPD IT   +LNAC+HSGLV+EGL  FE M     I P  +H+
Sbjct: 403 LGESAFDMLLQIEKRSIKPDDITFIGVLNACSHSGLVKEGLLCFELMRRKHKIEPKLQHY 462

Query: 459 ACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNP 518
            C++++L+++G  +   N +E+MP E +  +W      C  H   + G  V   L  Q  
Sbjct: 463 GCMVDILSRSGSIELAKNLIEEMPIEPNDVIWRTFLTACSNHKEFETGELVAKHLFLQGG 522

Query: 519 QSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSV 572
            + ++  LLS++Y++ G  + V +VR  + ER+ +K    SWIE++  VH F V
Sbjct: 523 YNPSSFVLLSNMYASFGMWKEVRRVRTTMKERKLRKIPGCSWIELDGNVHEFFV 576



 Score =  142 bits (359), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 103/384 (26%), Positives = 193/384 (50%), Gaps = 28/384 (7%)

Query: 146 AERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTR 205
            E D   WN +I  ++        L  + ++   S+S ++FS + +L  C +L  +    
Sbjct: 54  VEEDPFLWNAVIKSFSHGVDPRNALLLFCLMIENSVSVDKFSISLVLKACSRLGFVDFGM 113

Query: 206 QVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLG 265
           QVHG +  TG  S++ + + ++  Y KCG L  AR++FD    RD +++ +M+ GY K G
Sbjct: 114 QVHGFLRKTGIYSDLFLQNCLIGLYLKCGCLGFARQVFDRMPQRDSVSYNSMIDGYVKCG 173

Query: 266 DMESASKLFNEMP--EKNPVSWTTLIAGYTRNGLG-QKALELFTRMMILRIRPNQH--TF 320
            +ESA +LF+ MP  +KN +SW  +I+GYT++  G   A +LF  M      P +   ++
Sbjct: 174 LIESARELFDLMPREKKNLISWNCMISGYTQSEDGVNVASKLFDEM------PEKDLISW 227

Query: 321 SSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDN 380
           +S +        ++  K +   +     R + +  +++ID Y+K G ++  +++FD    
Sbjct: 228 NSLIDGYVKHRRIEDAKSLFDLMP----RKDVVTWATMIDGYAKLGFVHQAKKLFDEMPQ 283

Query: 381 KENSMLWNTMISALTQHGYDEQAIRLFHDMVRSS-VKPDKITLAVILNACTHSGLVQEGL 439
           ++  + +N+M++   Q+ Y  +AI +F+DM + S + PD+ TL ++L+A    G + + +
Sbjct: 284 RD-VVAYNSMMAGYVQNKYHAEAIGIFNDMEKESHLSPDETTLVIVLSAIAQLGRLSKAV 342

Query: 440 T---YFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGV 496
               Y       LG     +    LI+  ++ G   + M   E++  +   + WNA+ G 
Sbjct: 343 DIHLYIMDNKFRLG----GKLGVALIDTYSKCGSIQKSMRVFEEIENKSIDH-WNAMIGG 397

Query: 497 CRIHGNIDMGRKVVDQLIDQNPQS 520
             IHG   +G    D L+    +S
Sbjct: 398 LAIHG---LGESAFDMLLQIEKRS 418


>gi|326527617|dbj|BAK08083.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 642

 Score =  303 bits (777), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 172/580 (29%), Positives = 292/580 (50%), Gaps = 41/580 (7%)

Query: 16  PNNCLIQSFLSLISKGQLS-EAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRV 74
           P   L  +FLS +S+     + + +   + ++G  +P+  +  + + CA + S   G++V
Sbjct: 82  PAPALCSTFLSSLSRASSHHDLLQTFSSMHRKGAYVPSGCVPLVFKSCALTASSCQGRQV 141

Query: 75  HLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGM 134
           H H  L +      F+   L+  Y K G    A  VFD++PVK+    N +++GY+  G 
Sbjct: 142 HCH-ALVRGLLGDVFVLTALVDFYAKNGDMESAVSVFDEMPVKDPIPINCLITGYSKAGD 200

Query: 135 MKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTI 194
           +  AR LFD M  R   SWN+MI  YA  G   E L  +                     
Sbjct: 201 VDKARRLFDGMERRTSASWNSMIACYAHGGEFREALTLFD-------------------- 240

Query: 195 CVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFD---ETDARDV 251
                          ++L  G   N +  +S+    AK G+L   +R+ D   E D ++V
Sbjct: 241 ---------------RMLSEGARPNAITITSVFSICAKSGDLDTGKRVRDLIGEDDLQNV 285

Query: 252 LTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMIL 311
           +  T ++  Y K   ++ A + F+ M +++ V+W+T+IAGY +NG   ++LELF RM   
Sbjct: 286 IVHTALMEMYVKCRAIDDARREFDRMSQRDVVAWSTMIAGYAQNGRPLESLELFERMKAT 345

Query: 312 RIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDG 371
             RPN+ T    + ACA + S +  +Q+  +         + + S+LIDMY++CG +   
Sbjct: 346 DCRPNEVTLVGVISACAQLGSDELVEQIGNYAENQRLPLTSYLGSALIDMYTRCGHVGRA 405

Query: 372 RQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTH 431
           R VF   + K   + WN+MI  L  +G+ E AI L+  M  + V+P++IT   +L ACTH
Sbjct: 406 RSVFSRMEQK-GVITWNSMIRGLAMNGFAEDAISLYEKMAENGVQPNEITFVALLAACTH 464

Query: 432 SGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWN 491
           +GLV +G+ +FE M  +  + P  EH AC+++LL ++G   +    +  M  E ++ +W 
Sbjct: 465 AGLVDQGMAFFEEMKREHLVSPQVEHCACIVDLLCKSGGLWEAYKFICDMEVEPNAVIWT 524

Query: 492 ALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQ 551
            L   CR H ++++ +    +L+   P +S+ + LLS+IY+  G      ++R L+  + 
Sbjct: 525 TLLSSCRAHADVELAKLASRKLLAMEPDNSSIYVLLSNIYADAGLWGDAREIRDLMRSKN 584

Query: 552 FKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLA 591
            +K  A SWI+++ +VH F V D+ HP    +Y V+  L 
Sbjct: 585 VQKLSAYSWIKLDGEVHKFLVQDTYHPRSAEIYDVIHGLG 624


>gi|224125684|ref|XP_002319650.1| predicted protein [Populus trichocarpa]
 gi|222858026|gb|EEE95573.1| predicted protein [Populus trichocarpa]
          Length = 705

 Score =  303 bits (776), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 160/561 (28%), Positives = 294/561 (52%), Gaps = 42/561 (7%)

Query: 36  AISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLI 95
           A+++   + +  I + +  +  +L+ C++    ++GK +H    +        F+ N L+
Sbjct: 93  ALNTYTYMRKLDIEVDSFIIPSVLKACSQISVARMGKEIH-GFSVKNGLVSDVFVVNALM 151

Query: 96  SMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNT 155
            MY +CGS V AR +FDK+  +++ S++ M+  Y  L         F   ++R +VSW  
Sbjct: 152 QMYSECGSLVSARLLFDKMSERDVVSWSTMIRAYITL---------FYGFSQRSIVSWTA 202

Query: 156 MIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTG 215
           MI GY +   +EEG + +  +   ++  N+ +   ++  C  +  ++L +++H  +L  G
Sbjct: 203 MIAGYIRCNDLEEGERLFVRMIEENVFPNDITMLSLIISCGFVGAVQLGKRLHAYILRNG 262

Query: 216 FLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFN 275
           F  ++ +++++VD Y KC                               G++ SA  +F+
Sbjct: 263 FGMSLALATALVDMYGKC-------------------------------GEIRSARAIFD 291

Query: 276 EMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKH 335
            M  K+ ++WT +I+ Y +      A +LF +M    +RPN+ T  S L  CA   +L  
Sbjct: 292 SMKNKDVMTWTAMISAYAQANCIDYAFQLFVQMRDNGVRPNELTMVSLLSLCAVNGALDM 351

Query: 336 GKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALT 395
           GK  H ++ +     + I+ ++LIDMY+KCG ++  +++F    +++    WN M++   
Sbjct: 352 GKWFHAYIDKQGVEVDVILKTALIDMYAKCGDISGAQRLFSEAIDRDICT-WNVMMAGYG 410

Query: 396 QHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQ 455
            HGY E+A++LF +M    VKP+ IT    L+AC+H+GLV EG   FE M HD G++P  
Sbjct: 411 MHGYGEKALKLFTEMETLGVKPNDITFIGALHACSHAGLVVEGKGLFEKMIHDFGLVPKV 470

Query: 456 EHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLID 515
           EH+ C+++LL +AG  D+    +E MP   +  +W A+   C+IH N +MG     +L+ 
Sbjct: 471 EHYGCMVDLLGRAGLLDEAYKMIESMPVTPNIAIWGAMLAACKIHKNSNMGELAARELLA 530

Query: 516 QNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDS 575
             PQ+     L+S+IY+A  +   V  +R+ + +   KKE  +S IE+   VH F + D+
Sbjct: 531 LEPQNCGYKVLMSNIYAAANRWNDVAGMRKAVKDTGIKKEPGMSSIEVNGLVHDFKMGDT 590

Query: 576 LHPMRDVLYSVLEQLAGQMGE 596
            HP+ + +  +L +++ ++ E
Sbjct: 591 AHPLIEKISEMLAEMSKKLKE 611


>gi|18483237|gb|AAL73981.1|AF466201_10 putative vegetative storage protein [Sorghum bicolor]
          Length = 779

 Score =  303 bits (776), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 185/593 (31%), Positives = 300/593 (50%), Gaps = 56/593 (9%)

Query: 48  IRLPAE--TLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDV 105
            R+P    T  F+L+ C+    L  G+ +H H       T   F+S  LI +Y +C    
Sbjct: 93  FRVPPNKYTFPFVLKACSALADLCAGRTIHAHAAAVGLHT-DLFVSTALIDLYIRCARFG 151

Query: 106 DARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWN-----TMIIGY 160
            A  VF K+P++++ ++N ML+GYAN GM  HA     +M +R  +  N     +++   
Sbjct: 152 PAANVFAKMPMRDVVAWNAMLAGYANHGMYHHAIAHLLDMQDRGGLRPNASTLVSLLPLL 211

Query: 161 AKSGAVEEG-------------------------LKFYKVLRRFSISC---------NEF 186
           A+ GA+ +G                         L  Y   +    +C         NE 
Sbjct: 212 AQHGALFQGTSVHAYCLRAYLDQNEEQVLIGTALLDMYAKCKHLVYACRVFHGMTVRNEV 271

Query: 187 SFAGILTICVKLEELKLTRQVHGQVLVTG--FLSNVVISSSIVDAYAKCGELSDARR--- 241
           +++ ++   V  + +     +   +LV G  FLS    ++S+  A   C  L+D R    
Sbjct: 272 TWSALIGGFVLCDRMTEAFNLFKDMLVEGMCFLS----ATSVASALRVCASLADLRMGTQ 327

Query: 242 ----LFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGL 297
               L       D+    +++S YAK G +  A+ LF+E+  K+ +S+  L++GY +NG 
Sbjct: 328 LHALLAKSGIHADLTAGNSLLSMYAKAGLINEATMLFDEIAIKDTISYGALLSGYVQNGK 387

Query: 298 GQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSS 357
            ++A  +F +M    ++P+  T  S + AC+ + +L+HG+  HG +I       T + +S
Sbjct: 388 AEEAFLVFKKMQACNVQPDIATMVSLIPACSHLAALQHGRCSHGSVIIRGLALETSICNS 447

Query: 358 LIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKP 417
           LIDMY+KCG ++  RQVFD    ++  + WNTMI+    HG  ++A  LF  M     +P
Sbjct: 448 LIDMYAKCGRIDLSRQVFDKMPARD-IVSWNTMIAGYGIHGLGKEATTLFLSMKNQGFEP 506

Query: 418 DKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQ 477
           D +T   ++ AC+HSGLV EG  +F++MTH  GI+P  EH+ C+++LLA+ G  D+    
Sbjct: 507 DDVTFICLIAACSHSGLVTEGKHWFDTMTHKYGILPRMEHYICMVDLLARGGFLDEAYQF 566

Query: 478 LEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKG 537
           ++ MP + D  +W AL G CRIH NID+G++V   +    P+ +    LLS+I+SA G+ 
Sbjct: 567 IQSMPLKADVRVWGALLGACRIHKNIDLGKQVSRMIQKLGPEGTGNFVLLSNIFSAAGRF 626

Query: 538 RLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQL 590
               +VR +   + FKK    SWIEI   +HAF   D  HP    +Y  L+ +
Sbjct: 627 DEAAEVRIIQKVKGFKKSPGCSWIEINGSLHAFVGGDQSHPCSPDIYHELDNI 679



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 78/282 (27%), Positives = 135/282 (47%), Gaps = 37/282 (13%)

Query: 32  QLSEAISSL-DLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFL 90
           +++EA +   D+L +    L A ++A  L+ CA    L++G ++H  L  +      T  
Sbjct: 285 RMTEAFNLFKDMLVEGMCFLSATSVASALRVCASLADLRMGTQLHALLAKSGIHADLT-A 343

Query: 91  SNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDV 150
            N L+SMY K G   +A  +FD+I +K+  SY  +LSG                      
Sbjct: 344 GNSLLSMYAKAGLINEATMLFDEIAIKDTISYGALLSG---------------------- 381

Query: 151 VSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQ 210
                    Y ++G  EE    +K ++  ++  +  +   ++  C  L  L+  R  HG 
Sbjct: 382 ---------YVQNGKAEEAFLVFKKMQACNVQPDIATMVSLIPACSHLAALQHGRCSHGS 432

Query: 211 VLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESA 270
           V++ G      I +S++D YAKCG +  +R++FD+  ARD+++W TM++GY   G  + A
Sbjct: 433 VIIRGLALETSICNSLIDMYAKCGRIDLSRQVFDKMPARDIVSWNTMIAGYGIHGLGKEA 492

Query: 271 SKLF----NEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRM 308
           + LF    N+  E + V++  LIA  + +GL  +    F  M
Sbjct: 493 TTLFLSMKNQGFEPDDVTFICLIAACSHSGLVTEGKHWFDTM 534



 Score =  111 bits (278), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 86/358 (24%), Positives = 147/358 (41%), Gaps = 36/358 (10%)

Query: 116 VKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKV 175
           VK+   +   L  +   G +  AR +FD +   D  ++N +I  Y+  G     +  Y+ 
Sbjct: 30  VKDNKEWQQELEQHIARGQLALARQVFDRIPAPDARAYNALIRAYSWRGPFHAAIDLYRS 89

Query: 176 LRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGE 235
           +  F +  N+++F  +L  C  L +L   R +H      G  +++ +S++++D Y +C  
Sbjct: 90  MLYFRVPPNKYTFPFVLKACSALADLCAGRTIHAHAAAVGLHTDLFVSTALIDLYIRCAR 149

Query: 236 LSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRN 295
              A  +F +   RDV+ W  M++GYA  G    A     +M +              R 
Sbjct: 150 FGPAANVFAKMPMRDVVAWNAMLAGYANHGMYHHAIAHLLDMQD--------------RG 195

Query: 296 GLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSN---T 352
           GL                RPN  T  S L   A   +L  G  VH + +R     N    
Sbjct: 196 GL----------------RPNASTLVSLLPLLAQHGALFQGTSVHAYCLRAYLDQNEEQV 239

Query: 353 IVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDM-V 411
           ++ ++L+DMY+KC  L    +VF     + N + W+ +I          +A  LF DM V
Sbjct: 240 LIGTALLDMYAKCKHLVYACRVFHGMTVR-NEVTWSALIGGFVLCDRMTEAFNLFKDMLV 298

Query: 412 RSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAG 469
                    ++A  L  C     ++ G T   ++    GI  +      L+ + A+AG
Sbjct: 299 EGMCFLSATSVASALRVCASLADLRMG-TQLHALLAKSGIHADLTAGNSLLSMYAKAG 355



 Score = 89.4 bits (220), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 48/193 (24%), Positives = 90/193 (46%), Gaps = 2/193 (1%)

Query: 247 DARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFT 306
           + +D   W   +  +   G +  A ++F+ +P  +  ++  LI  Y+  G    A++L+ 
Sbjct: 29  EVKDNKEWQQELEQHIARGQLALARQVFDRIPAPDARAYNALIRAYSWRGPFHAAIDLYR 88

Query: 307 RMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCG 366
            M+  R+ PN++TF   L AC+++  L  G+ +H         ++  V ++LID+Y +C 
Sbjct: 89  SMLYFRVPPNKYTFPFVLKACSALADLCAGRTIHAHAAAVGLHTDLFVSTALIDLYIRCA 148

Query: 367 CLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMV-RSSVKPDKITLAVI 425
                  VF     ++  + WN M++    HG    AI    DM  R  ++P+  TL  +
Sbjct: 149 RFGPAANVFAKMPMRD-VVAWNAMLAGYANHGMYHHAIAHLLDMQDRGGLRPNASTLVSL 207

Query: 426 LNACTHSGLVQEG 438
           L      G + +G
Sbjct: 208 LPLLAQHGALFQG 220



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 43/153 (28%), Positives = 77/153 (50%), Gaps = 5/153 (3%)

Query: 28  ISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPT 87
           +  G+  EA      +    ++    T+  ++  C+   +L+ G+  H  + +      T
Sbjct: 383 VQNGKAEEAFLVFKKMQACNVQPDIATMVSLIPACSHLAALQHGRCSHGSVIIRGLALET 442

Query: 88  TFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMA- 146
           + + N LI MY KCG    +R+VFDK+P +++ S+N M++GY   G+ K A  LF +M  
Sbjct: 443 S-ICNSLIDMYAKCGRIDLSRQVFDKMPARDIVSWNTMIAGYGIHGLGKEATTLFLSMKN 501

Query: 147 ---ERDVVSWNTMIIGYAKSGAVEEGLKFYKVL 176
              E D V++  +I   + SG V EG  ++  +
Sbjct: 502 QGFEPDDVTFICLIAACSHSGLVTEGKHWFDTM 534


>gi|297743099|emb|CBI35966.3| unnamed protein product [Vitis vinifera]
          Length = 624

 Score =  303 bits (776), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 170/544 (31%), Positives = 287/544 (52%), Gaps = 36/544 (6%)

Query: 54  TLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDK 113
           T  F+L+ C+   S+  G+++H H+ L        F+ N LI MY KC     AR  +D 
Sbjct: 95  TFPFVLKACSTLGSVLEGEQIHTHV-LRLGFGSDLFVCNSLIDMYCKCFRLDSARNFWDD 153

Query: 114 IPVKNLFSYNNMLSGYANLGMMKHARNLFDNMA-ERDVVSWNTMIIGYAKSGAVEEGLKF 172
           +  ++  S+N+++SGY   G ++ AR+LF+ M   R+VV W  MI GY K G   E L  
Sbjct: 154 MGFRDEVSWNSIISGYVQWGQVEKARDLFEEMPMRRNVVCWTAMINGYGKEGDFVEMLSL 213

Query: 173 YK--VLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAY 230
           ++  ++    +  N  +   +L+ C  L   ++ R +   + V     N ++ ++++D Y
Sbjct: 214 FRQMLVSADEVQPNAATMVCLLSACSTLCNYEVGRFLSVFIDVNKIPLNTILVTALIDMY 273

Query: 231 AKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIA 290
           +KC                               GD+E A ++F+ +  KN  SW  +I 
Sbjct: 274 SKC-------------------------------GDVEKAWRIFDGVSCKNLPSWNAIIT 302

Query: 291 GYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRS 350
           G  + GL ++A++L+  M    ++PN+ T  + L ACA + +L+ G++VH +L R     
Sbjct: 303 GCVQGGLLEEAIDLYRHMKAQSVKPNEITLVNVLSACAGLGALELGREVHLYLGRNGLDL 362

Query: 351 NTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDM 410
           N I+ ++L+DMY+KCG ++D   +F  T  K+ + LWN MI  L  HG    ++ +F  M
Sbjct: 363 NVILATALVDMYAKCGKIDDACLIFVKTSEKDVA-LWNAMILGLAYHGDGRDSLAVFSQM 421

Query: 411 VRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGC 470
           VR+ V+P+ +T   +L+AC HSGLV+EG   F SM    G+ P  EH+AC+++LL +AG 
Sbjct: 422 VRAGVQPNDVTFIGVLSACNHSGLVEEGRVQFSSMADKHGLSPKLEHYACMVDLLGRAGH 481

Query: 471 SDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSI 530
             +    ++ M    DS +W AL   CRIH N+++  K+ + ++     +     LLS+I
Sbjct: 482 LKEAYELVQNMLIPPDSIIWGALLSACRIHRNLELADKISETIMASQDPNIGFCILLSNI 541

Query: 531 YSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQL 590
           Y++ G+ + V +VR+ + E++ KK    SW+E++  VH F V D+ H     +Y   E L
Sbjct: 542 YASSGRWKDVARVRRQVKEKRIKKPSGCSWVEVDGVVHRFVVEDTTHLKSGEIYGAYEIL 601

Query: 591 AGQM 594
              +
Sbjct: 602 VNHL 605



 Score =  199 bits (506), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 133/420 (31%), Positives = 209/420 (49%), Gaps = 14/420 (3%)

Query: 131 NLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAG 190
           +L  + +AR + D        SWN++I  Y   G+ +  L  Y  + R S   + F+F  
Sbjct: 39  DLHSIDYARFVLDQTPSPTDFSWNSLIRAYTVHGSPQNSLFLYLKMLRSSTKPSNFTFPF 98

Query: 191 ILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARD 250
           +L  C  L  +    Q+H  VL  GF S++ + +S++D Y KC  L  AR  +D+   RD
Sbjct: 99  VLKACSTLGSVLEGEQIHTHVLRLGFGSDLFVCNSLIDMYCKCFRLDSARNFWDDMGFRD 158

Query: 251 VLTWTTMVSGYAKLGDMESASKLFNEMP-EKNPVSWTTLIAGYTRNGLGQKALELFTRMM 309
            ++W +++SGY + G +E A  LF EMP  +N V WT +I GY + G   + L LF +M+
Sbjct: 159 EVSWNSIISGYVQWGQVEKARDLFEEMPMRRNVVCWTAMINGYGKEGDFVEMLSLFRQML 218

Query: 310 IL--RIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGC 367
           +    ++PN  T    L AC+++ + + G+ +  F+       NTI++++LIDMYSKCG 
Sbjct: 219 VSADEVQPNAATMVCLLSACSTLCNYEVGRFLSVFIDVNKIPLNTILVTALIDMYSKCGD 278

Query: 368 LNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILN 427
           +    ++FD    K N   WN +I+   Q G  E+AI L+  M   SVKP++ITL  +L+
Sbjct: 279 VEKAWRIFDGVSCK-NLPSWNAIITGCVQGGLLEEAIDLYRHMKAQSVKPNEITLVNVLS 337

Query: 428 ACTHSGLVQEGLT---YFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYE 484
           AC   G ++ G     Y      DL +I        L+++ A+ G  D       K   E
Sbjct: 338 ACAGLGALELGREVHLYLGRNGLDLNVILA----TALVDMYAKCGKIDDACLIFVKTS-E 392

Query: 485 HDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVR 544
            D  LWNA+      HG+      V  Q++    Q +    +   + SA     LVE+ R
Sbjct: 393 KDVALWNAMILGLAYHGDGRDSLAVFSQMVRAGVQPNDVTFI--GVLSACNHSGLVEEGR 450



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 52/166 (31%), Positives = 77/166 (46%), Gaps = 9/166 (5%)

Query: 9   GINRKNLPN-NCLIQSFLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKS 67
           G++ KNLP+ N +I      +  G L EAI     +  + ++    TL  +L  CA   +
Sbjct: 288 GVSCKNLPSWNAIITG---CVQGGLLEEAIDLYRHMKAQSVKPNEITLVNVLSACAGLGA 344

Query: 68  LKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLS 127
           L+LG+ VHL+L           L+  L+ MY KCG   DA  +F K   K++  +N M+ 
Sbjct: 345 LELGREVHLYLGRNGLDL-NVILATALVDMYAKCGKIDDACLIFVKTSEKDVALWNAMIL 403

Query: 128 GYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAK----SGAVEEG 169
           G A  G  + +  +F  M    V   +   IG       SG VEEG
Sbjct: 404 GLAYHGDGRDSLAVFSQMVRAGVQPNDVTFIGVLSACNHSGLVEEG 449


>gi|225437951|ref|XP_002269187.1| PREDICTED: pentatricopeptide repeat-containing protein At1g32415,
           mitochondrial-like [Vitis vinifera]
          Length = 743

 Score =  303 bits (776), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 173/626 (27%), Positives = 319/626 (50%), Gaps = 80/626 (12%)

Query: 31  GQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFL 90
           G+LS+A    + + +R +      +++    C  + + ++G+   L   + +R   +   
Sbjct: 121 GRLSDACRFFEEMPERNV------VSWTSLLCGLANAGRIGEARELFNVMPERNVVSW-- 172

Query: 91  SNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDV 150
            N ++    + G   +AR+VF+++PVK+  S+N M++GYA    M+ AR LFD M +R+V
Sbjct: 173 -NSMLVGLIRSGQLEEARRVFNEMPVKSQVSWNVMIAGYAEHSRMEEARVLFDGMGDRNV 231

Query: 151 VSWNTMIIGYAKSGAVEEG--------------------------------LKFYKVLRR 178
           V+W +MI GY ++G V+EG                                L F ++   
Sbjct: 232 VTWTSMISGYCRAGNVQEGYCLFQKMPERNVVSWTAMIGGFAWNGFYKEALLLFLEMKGN 291

Query: 179 FSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVT----------------------GF 216
           + +  N+ +F  +   C  +    L  Q H  +++                       GF
Sbjct: 292 YDMKPNDETFISLAYACAGIGFPHLGMQFHAHLIINCWDYDDYDGRLFKSLIHMYSMFGF 351

Query: 217 LS-------------NVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAK 263
           +              N    +S+++ Y + G+L  A+ LFD    RD ++WT+M++GY  
Sbjct: 352 MDFAWYIFFRNSMSYNTQSCNSMINGYIRIGQLEKAQSLFDTIPVRDKISWTSMINGYFN 411

Query: 264 LGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSC 323
           +G +  A  LFN MP+++ V+WT +++G+ +N L  +A  LF+ M +  + P   TFS  
Sbjct: 412 VGQIAKACYLFNNMPDRDAVAWTVMVSGHVQNELFAEATYLFSEMRVKGVSPLNSTFSIL 471

Query: 324 LCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKEN 383
           L A  ++  L  G+Q H  L++T F  + I+ +SLI MY+KCG + D   +F    +++ 
Sbjct: 472 LGAAGAMAYLDQGRQFHCLLMKTQFEFDLILQNSLISMYAKCGEIGDAYSIFSKMISRD- 530

Query: 384 SMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFE 443
            + WN+MI   + HG   +A+++F  M+ S   P+ +T   IL+AC+H+GL+ +G   F+
Sbjct: 531 LISWNSMIMGFSHHGLTSEALKVFEAMLTSGTHPNSVTFLGILSACSHAGLLNQGWELFD 590

Query: 444 SMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNI 503
           +M+    I P  EH+ C++ LL +AG  ++    + K+P+E D  +W AL GVC   G I
Sbjct: 591 AMSDVFAIQPQLEHYVCMVNLLGRAGKVEEAEEFISKLPFEPDLTIWGALLGVCGF-GMI 649

Query: 504 DMG--RKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWI 561
           + G  R+   +L++ +P ++  H +L +I++++G+     ++R+ +  +  +K    SWI
Sbjct: 650 NTGVARRAAKRLLELDPLNAPAHVVLCNIHASIGQRAEEGQLRKEMGLKGVRKVPGCSWI 709

Query: 562 EIENKVHAFSVSDSLHPMRDVLYSVL 587
            ++ + + F   D +HP  D + S+L
Sbjct: 710 LLKGEPYVFLSGDRIHPQADEMLSLL 735



 Score =  181 bits (458), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 126/426 (29%), Positives = 207/426 (48%), Gaps = 54/426 (12%)

Query: 25  LSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRK 84
           L  +S+ +L EA   LD +  RG+         +L + +++  +   + +    ++   +
Sbjct: 49  LECLSQQRLREARHMLDEMPNRGVLDRVVCWTSLLSKFSKNGFIDEARAL---FEIMPER 105

Query: 85  TPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDN 144
              T+  N ++S Y +CG   DA + F+++P +N+ S+ ++L G AN G +  AR LF+ 
Sbjct: 106 NVVTY--NAMLSGYVQCGRLSDACRFFEEMPERNVVSWTSLLCGLANAGRIGEARELFNV 163

Query: 145 MAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLT 204
           M ER+VVSWN+M++G  +SG +EE  + +                          E+ + 
Sbjct: 164 MPERNVVSWNSMLVGLIRSGQLEEARRVFN-------------------------EMPVK 198

Query: 205 RQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKL 264
            QV   V++ G              YA+   + +AR LFD    R+V+TWT+M+SGY + 
Sbjct: 199 SQVSWNVMIAG--------------YAEHSRMEEARVLFDGMGDRNVVTWTSMISGYCRA 244

Query: 265 GDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMI-LRIRPNQHTFSSC 323
           G+++    LF +MPE+N VSWT +I G+  NG  ++AL LF  M     ++PN  TF S 
Sbjct: 245 GNVQEGYCLFQKMPERNVVSWTAMIGGFAWNGFYKEALLLFLEMKGNYDMKPNDETFISL 304

Query: 324 LCACASIVSLKHGKQVHGFLIRTNFRSNTI---VMSSLIDMYSKCGCLNDGRQVFDLTDN 380
             ACA I     G Q H  LI   +  +     +  SLI MYS  G ++    +F     
Sbjct: 305 AYACAGIGFPHLGMQFHAHLIINCWDYDDYDGRLFKSLIHMYSMFGFMDFAWYIFFRNSM 364

Query: 381 KENSMLWNTMISALTQHGYDEQAIRLFHDM-VRSSVKPDKITLAVILNACTHSGLVQEGL 439
             N+   N+MI+   + G  E+A  LF  + VR     DKI+   ++N   + G + +  
Sbjct: 365 SYNTQSCNSMINGYIRIGQLEKAQSLFDTIPVR-----DKISWTSMINGYFNVGQIAKAC 419

Query: 440 TYFESM 445
             F +M
Sbjct: 420 YLFNNM 425



 Score =  102 bits (255), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 94/378 (24%), Positives = 169/378 (44%), Gaps = 28/378 (7%)

Query: 195 CVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTW 254
           C+  + L+  R +  ++   G L  VV  +S++  ++K G + +AR LF+    R+V+T+
Sbjct: 51  CLSQQRLREARHMLDEMPNRGVLDRVVCWTSLLSKFSKNGFIDEARALFEIMPERNVVTY 110

Query: 255 TTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIR 314
             M+SGY + G +  A + F EMPE+N VSWT+L+ G    G   +A ELF  M      
Sbjct: 111 NAMLSGYVQCGRLSDACRFFEEMPERNVVSWTSLLCGLANAGRIGEARELFNVM----PE 166

Query: 315 PNQHTFSSCLCACASIVSLKHGKQVHGFL-IRTNFRSNTIVMSSLIDMYSKCGCLNDGRQ 373
            N  +++S L        L+  ++V   + +++    N ++       Y++   + + R 
Sbjct: 167 RNVVSWNSMLVGLIRSGQLEEARRVFNEMPVKSQVSWNVMIAG-----YAEHSRMEEARV 221

Query: 374 VFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSG 433
           +FD   ++ N + W +MIS   + G  ++   LF  M   +V    ++   ++     +G
Sbjct: 222 LFDGMGDR-NVVTWTSMISGYCRAGNVQEGYCLFQKMPERNV----VSWTAMIGGFAWNG 276

Query: 434 LVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSD---QLMNQLEKMPYEHDSY-- 488
             +E L  F  M  +  + PN E    L    A  G      Q    L    +++D Y  
Sbjct: 277 FYKEALLLFLEMKGNYDMKPNDETFISLAYACAGIGFPHLGMQFHAHLIINCWDYDDYDG 336

Query: 489 -LWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLI 547
            L+ +L  +  + G +D    +      +N  S  T    S I   +  G+L EK + L 
Sbjct: 337 RLFKSLIHMYSMFGFMDFAWYI----FFRNSMSYNTQSCNSMINGYIRIGQL-EKAQSLF 391

Query: 548 NERQFKKEQAISWIEIEN 565
           +    + +  ISW  + N
Sbjct: 392 DTIPVRDK--ISWTSMIN 407


>gi|297740109|emb|CBI30291.3| unnamed protein product [Vitis vinifera]
          Length = 616

 Score =  303 bits (776), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 187/591 (31%), Positives = 295/591 (49%), Gaps = 82/591 (13%)

Query: 15  LPNNCLIQSFLSLIS----KGQLSEAISSLDLLAQRGIRLPAET---LAF--ILQQCAES 65
           +P   L+ S+ ++IS      + SEAI +       G+R+  E     AF   ++ CA  
Sbjct: 1   MPQRNLV-SWTAMISGLSQNSKFSEAIRTF-----CGMRICGEVPTQFAFSSAIRACASL 54

Query: 66  KSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNM 125
            S+++GK++H                   +++ F  GS+              LF  +N+
Sbjct: 55  GSIEMGKQMHC------------------LALKFGIGSE--------------LFVGSNL 82

Query: 126 LSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNE 185
              Y+  G M  A  +F+ M  +D VSW  MI GY+K G  EE L  +K +    ++ ++
Sbjct: 83  EDMYSKCGAMFDACKVFEEMPCKDEVSWTAMIDGYSKIGEFEEALLAFKKMIDEEVTIDQ 142

Query: 186 FSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDE 245
                 L  C  L+  K  R VH  V+  GF S++ + +++ D Y+K             
Sbjct: 143 HVLCSTLGACGALKACKFGRSVHSSVVKLGFESDIFVGNALTDMYSKA------------ 190

Query: 246 TDARDVLTWTTMVSGYAKLGDMESASKLFNEMPE-KNPVSWTTLIAGYTRNGLGQKALEL 304
                              GDMESAS +F    E +N VS+T LI GY      +K L +
Sbjct: 191 -------------------GDMESASNVFGIDSECRNVVSYTCLIDGYVETEQIEKGLSV 231

Query: 305 FTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSK 364
           F  +    I PN+ TFSS + ACA+  +L+ G Q+H  +++ NF  +  V S L+DMY K
Sbjct: 232 FVELRRQGIEPNEFTFSSLIKACANQAALEQGTQLHAQVMKINFDEDPFVSSILVDMYGK 291

Query: 365 CGCLNDGRQVFD-LTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLA 423
           CG L    Q FD + D  E  + WN+++S   QHG  + AI++F  MV   VKP+ IT  
Sbjct: 292 CGLLEQAIQAFDEIGDPTE--IAWNSLVSVFGQHGLGKDAIKIFERMVDRGVKPNAITFI 349

Query: 424 VILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPY 483
            +L  C+H+GLV+EGL YF SM    G++P +EH++C+I+LL +AG   +    + +MP+
Sbjct: 350 SLLTGCSHAGLVEEGLDYFYSMDKTYGVVPGEEHYSCVIDLLGRAGRLKEAKEFINRMPF 409

Query: 484 EHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKV 543
           E +++ W +  G CRIHG+ +MG+   ++L+   P++S    LLS+IY+   +   V  V
Sbjct: 410 EPNAFGWCSFLGACRIHGDKEMGKLAAEKLVKLEPKNSGALVLLSNIYANERQWEDVRSV 469

Query: 544 RQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQM 594
           R  + +   KK    SW+++  K H F   D  HP +  +Y  L+ L  Q+
Sbjct: 470 RMRMRDGNVKKLPGYSWVDVGYKTHVFGAEDWSHPRKSAIYEKLDTLLDQI 520


>gi|449485624|ref|XP_004157227.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g57430, chloroplastic-like [Cucumis sativus]
          Length = 863

 Score =  303 bits (776), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 165/537 (30%), Positives = 285/537 (53%), Gaps = 64/537 (11%)

Query: 54  TLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDK 113
           TL+  L+ CA    +KLG+++H  L +     P +F+   LI MY KCG           
Sbjct: 291 TLSSALKACAAIGLVKLGRQLHSAL-MKMDMEPDSFVGVGLIDMYSKCG----------- 338

Query: 114 IPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFY 173
                               +++ AR +FD M  +DV+ WN++I GY+  G   E +  +
Sbjct: 339 --------------------LLQDARMVFDLMPXKDVIVWNSIISGYSNCGYDIEAMSLF 378

Query: 174 KVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKC 233
             + +  +  N+ + + IL      +      QVH   + +G+  +  +++S++D+Y KC
Sbjct: 379 TNMYKEGLEFNQTTLSTILKSTAGSQANGFCEQVHTISIKSGYQYDGYVANSLLDSYGKC 438

Query: 234 GELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYT 293
             L DA                               +K+F   P ++ V++T++I  Y+
Sbjct: 439 CLLEDA-------------------------------AKVFEVCPAEDLVAYTSMITAYS 467

Query: 294 RNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTI 353
           + GLG++AL+++ RM    I+P+   FSS   ACA++ + + GKQ+H  +++    S+  
Sbjct: 468 QYGLGEEALKMYLRMQDRDIKPDAFIFSSLFNACANLSAYEQGKQIHVHVLKCGLLSDVF 527

Query: 354 VMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRS 413
             +SL++MY+KCG ++D   +F+    +   + W+ MI  L QHG+  +A++LF+ M+++
Sbjct: 528 AGNSLVNMYAKCGSIDDASCIFNEISWR-GIVSWSAMIGGLAQHGHGRKALQLFYQMLKN 586

Query: 414 SVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQ 473
            + P+ ITL  +L+AC H+GLV E   +F  M    GI P QEH+AC++++L + G  D+
Sbjct: 587 GILPNHITLVSVLSACNHAGLVTEARRFFGLMEKLFGITPTQEHYACMVDILGRVGRLDE 646

Query: 474 LMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSA 533
            M  +++MP++  + +W AL G  RIH NI++GR   + L+   P+ S TH LL++IY++
Sbjct: 647 AMVLVKEMPFQASAAVWGALLGAARIHKNIELGRHAAEMLLTLEPEKSGTHILLANIYAS 706

Query: 534 LGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQL 590
            G    V KVR+ +     KKE  +SWIE+++KV+ F V D  HP    +Y  L+ L
Sbjct: 707 TGMWDNVAKVRRSMKNSLVKKEPGMSWIELKDKVYTFIVGDRSHPRSKEIYVKLDDL 763



 Score =  170 bits (431), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 105/313 (33%), Positives = 164/313 (52%), Gaps = 10/313 (3%)

Query: 129 YANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSF 188
           Y+     + AR L  + +E D+VSW+ +I GY ++G  EE L  Y  +       NEF+F
Sbjct: 92  YSKCQCFRVARKLVIDSSEPDLVSWSALISGYVQNGRGEEALLTYYEMYLLGAKGNEFTF 151

Query: 189 AGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISS--SIVDAYAKCGELSDARR----- 241
           + +L  C     L+L +Q+H   LVT  +S  +  +  S+      C  L D        
Sbjct: 152 SSVLKGCSLTRNLELGKQIHRVALVTEMISTGISPNEFSLSTVLNACAGLEDENYGMKVH 211

Query: 242 --LFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQ 299
             L       D  +   ++  YAK G  E+A  +F E+P+ + VSW  +IAG   +    
Sbjct: 212 GYLIKLGYDSDPFSANALLDMYAKSGCPEAAIAVFYEIPKPDIVSWNAVIAGCVLHEKND 271

Query: 300 KALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLI 359
            AL+L  +M   R+ P+  T SS L ACA+I  +K G+Q+H  L++ +   ++ V   LI
Sbjct: 272 LALKLLGKMGSYRVAPSMFTLSSALKACAAIGLVKLGRQLHSALMKMDMEPDSFVGVGLI 331

Query: 360 DMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDK 419
           DMYSKCG L D R VFDL   K+  ++WN++IS  +  GYD +A+ LF +M +  ++ ++
Sbjct: 332 DMYSKCGLLQDARMVFDLMPXKD-VIVWNSIISGYSNCGYDIEAMSLFTNMYKEGLEFNQ 390

Query: 420 ITLAVILNACTHS 432
            TL+ IL +   S
Sbjct: 391 TTLSTILKSTAGS 403



 Score =  155 bits (391), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 136/539 (25%), Positives = 242/539 (44%), Gaps = 64/539 (11%)

Query: 28  ISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPT 87
           +  G+  EA+ +   +   G +    T + +L+ C+ +++L+LGK++H  + L      T
Sbjct: 124 VQNGRGEEALLTYYEMYLLGAKGNEFTFSSVLKGCSLTRNLELGKQIH-RVALVTEMIST 182

Query: 88  TFLSNH--LISMYFKCGSDVD---ARKV--------FDKIPVKNLFSYNNMLSGYANLGM 134
               N   L ++   C    D     KV        +D  P    FS N +L  YA  G 
Sbjct: 183 GISPNEFSLSTVLNACAGLEDENYGMKVHGYLIKLGYDSDP----FSANALLDMYAKSGC 238

Query: 135 MKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTI 194
            + A  +F  + + D+VSWN +I G       +  LK    +  + ++ + F+ +  L  
Sbjct: 239 PEAAIAVFYEIPKPDIVSWNAVIAGCVLHEKNDLALKLLGKMGSYRVAPSMFTLSSALKA 298

Query: 195 CVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTW 254
           C  +  +KL RQ+H  ++      +  +   ++D Y+KCG L DAR +FD    +DV+ W
Sbjct: 299 CAAIGLVKLGRQLHSALMKMDMEPDSFVGVGLIDMYSKCGLLQDARMVFDLMPXKDVIVW 358

Query: 255 TTMVSGYAKLG-DMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRI 313
            +++SGY+  G D+E                                A+ LFT M    +
Sbjct: 359 NSIISGYSNCGYDIE--------------------------------AMSLFTNMYKEGL 386

Query: 314 RPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQ 373
             NQ T S+ L + A   +    +QVH   I++ ++ +  V +SL+D Y KC  L D  +
Sbjct: 387 EFNQTTLSTILKSTAGSQANGFCEQVHTISIKSGYQYDGYVANSLLDSYGKCCLLEDAAK 446

Query: 374 VFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSG 433
           VF++    E+ + + +MI+A +Q+G  E+A++++  M    +KPD    + + NAC +  
Sbjct: 447 VFEVCP-AEDLVAYTSMITAYSQYGLGEEALKMYLRMQDRDIKPDAFIFSSLFNACANLS 505

Query: 434 LVQEGLTYFESMTHDL--GIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWN 491
             ++G    +   H L  G++ +      L+ + A+ G  D       ++ +      W+
Sbjct: 506 AYEQGK---QIHVHVLKCGLLSDVFAGNSLVNMYAKCGSIDDASCIFNEISWR-GIVSWS 561

Query: 492 ALHGVCRIHGNIDMGRKVVDQLIDQNPQSS--ATHGLLSSIYSALGKGRLVEKVRQLIN 548
           A+ G    HG+   GRK + QL  Q  ++     H  L S+ SA     LV + R+   
Sbjct: 562 AMIGGLAQHGH---GRKAL-QLFYQMLKNGILPNHITLVSVLSACNHAGLVTEARRFFG 616



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 80/276 (28%), Positives = 140/276 (50%), Gaps = 12/276 (4%)

Query: 227 VDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEM----PEKNP 282
           V+ Y+KC     AR+L  ++   D+++W+ ++SGY + G  E A   + EM     + N 
Sbjct: 89  VNLYSKCQCFRVARKLVIDSSEPDLVSWSALISGYVQNGRGEEALLTYYEMYLLGAKGNE 148

Query: 283 VSWTTLIAG--YTRN-GLGQKA--LELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGK 337
            ++++++ G   TRN  LG++   + L T M+   I PN+ + S+ L ACA +    +G 
Sbjct: 149 FTFSSVLKGCSLTRNLELGKQIHRVALVTEMISTGISPNEFSLSTVLNACAGLEDENYGM 208

Query: 338 QVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQH 397
           +VHG+LI+  + S+    ++L+DMY+K GC      VF     K + + WN +I+    H
Sbjct: 209 KVHGYLIKLGYDSDPFSANALLDMYAKSGCPEAAIAVF-YEIPKPDIVSWNAVIAGCVLH 267

Query: 398 GYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEH 457
             ++ A++L   M    V P   TL+  L AC   GLV+ G     S    + + P+   
Sbjct: 268 EKNDLALKLLGKMGSYRVAPSMFTLSSALKACAAIGLVKLG-RQLHSALMKMDMEPDSFV 326

Query: 458 HACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNAL 493
              LI++ ++ G         + MP + D  +WN++
Sbjct: 327 GVGLIDMYSKCGLLQDARMVFDLMPXK-DVIVWNSI 361


>gi|449492963|ref|XP_004159154.1| PREDICTED: uncharacterized protein LOC101226880 [Cucumis sativus]
          Length = 1725

 Score =  303 bits (776), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 171/565 (30%), Positives = 294/565 (52%), Gaps = 57/565 (10%)

Query: 27   LISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTP 86
            L   G   EA+ +   L + G+     +    ++ C+    L  G+  H    +   +T 
Sbjct: 1117 LARGGDSVEALRAFSSLRKLGLIPTRSSFPCTIKSCSALCDLVSGRMSHQQAFVFGFET- 1175

Query: 87   TTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMA 146
              F+S+ LI MY KCG   DAR +FD+IP++N+ S+ +M++GY       +A  LF +  
Sbjct: 1176 DLFVSSALIDMYSKCGQLKDARALFDEIPLRNVVSWTSMITGYVQNEQADNALLLFKDFL 1235

Query: 147  ERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQ 206
            E +                VE+G          ++  +      +L+ C ++    +T  
Sbjct: 1236 EEET--------------EVEDG---------NNVPLDSVVMVSVLSACSRVSGKGITEG 1272

Query: 207  VHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGD 266
            VHG V+  GF  ++ + ++++DAYAKCG+   ++++FD  + +D ++W +M++ YA+   
Sbjct: 1273 VHGFVVKKGFDGSIGVGNTLMDAYAKCGQPLVSKKVFDWMEEKDDISWNSMIAVYAQ--- 1329

Query: 267  MESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMI-LRIRPNQHTFSSCLC 325
                                        +GL  +ALE+F  M+  + +R N  T S+ L 
Sbjct: 1330 ----------------------------SGLSGEALEVFHGMVRHVGVRYNAVTLSAVLL 1361

Query: 326  ACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSM 385
            ACA   +L+ GK +H  +I+ +   N  V +S+IDMY KCG +   ++ FD    K N  
Sbjct: 1362 ACAHAGALRAGKCIHDQVIKMDLEYNVCVGTSIIDMYCKCGRVEMAKKTFDRMKEK-NVK 1420

Query: 386  LWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESM 445
             W  M++    HG  ++A+ +F+ MVR+ VKP+ IT   +L AC+H+GLV+EG  +F +M
Sbjct: 1421 SWTAMVAGYGMHGRAKEALDIFYKMVRAGVKPNYITFVSVLAACSHAGLVEEGWHWFNAM 1480

Query: 446  THDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDM 505
             H   I P  EH+ C+++L  +AGC ++  N +++M  + D  +W +L G CRIH N+D+
Sbjct: 1481 KHKYDIEPGIEHYGCMVDLFGRAGCLNEAYNLIKRMKMKPDFVVWGSLLGACRIHKNVDL 1540

Query: 506  GRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIEN 565
            G     +L + +P +   + LLS++Y+  G+   VE++R L+  RQ  K    S +E++ 
Sbjct: 1541 GEIAAQKLFELDPDNCGYYVLLSNLYADAGRWADVERMRMLMKNRQLVKPPGFSLVELKG 1600

Query: 566  KVHAFSVSDSLHPMRDVLYSVLEQL 590
            +VH F V D  HP  +++Y  LE+L
Sbjct: 1601 RVHVFLVGDKEHPHHEMIYKYLEKL 1625



 Score =  249 bits (636), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 125/353 (35%), Positives = 203/353 (57%), Gaps = 1/353 (0%)

Query: 129 YANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSF 188
           Y+  G + +A  LF  +      +WN +I     +G  E+ L  YK +    I+ ++F+F
Sbjct: 69  YSTHGRIAYAILLFYQIQNPCTFTWNLIIRANTINGLSEQALMLYKNMVCQGIAADKFTF 128

Query: 189 AGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDA 248
             ++  C     + L + VHG ++  GF  +V + ++++D Y KCG    A ++F++   
Sbjct: 129 PFVIKACTNFLSIDLGKVVHGSLIKYGFSGDVFVQNNLIDFYFKCGHTRFALKVFEKMRV 188

Query: 249 RDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRM 308
           R+V++WTT++SG    GD++ A ++F+E+P KN VSWT +I GY RN   ++ALELF RM
Sbjct: 189 RNVVSWTTVISGLISCGDLQEARRIFDEIPSKNVVSWTAMINGYIRNQQPEEALELFKRM 248

Query: 309 MILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCL 368
               I PN++T  S + AC  +  L  G+ +H + I+        + ++LIDMYSKCG +
Sbjct: 249 QAENIFPNEYTMVSLIKACTEMGILTLGRGIHDYAIKNCIEIGVYLGTALIDMYSKCGSI 308

Query: 369 NDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNA 428
            D  +VF+ T  +++   WN+MI++L  HG  ++A+ LF +M R +VKPD IT   +L A
Sbjct: 309 KDAIEVFE-TMPRKSLPTWNSMITSLGVHGLGQEALNLFSEMERVNVKPDAITFIGVLCA 367

Query: 429 CTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKM 481
           C H   V+EG  YF  MT   GI P  EH+ C+ EL A++   D+     +++
Sbjct: 368 CVHIKNVKEGCAYFTRMTQHYGIAPIPEHYECMTELYARSNNLDEAFKSTKEV 420



 Score =  164 bits (415), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 117/424 (27%), Positives = 208/424 (49%), Gaps = 45/424 (10%)

Query: 141  LFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEE 200
             +  + + +V SWN++I   A+ G   E L+ +  LR+  +     SF   +  C  L +
Sbjct: 1098 FYKYVDKSNVHSWNSVIADLARGGDSVEALRAFSSLRKLGLIPTRSSFPCTIKSCSALCD 1157

Query: 201  LKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSG 260
            L   R  H Q  V GF +++ +SS+++D Y+KCG+L DAR LFDE   R+V++WT+M++G
Sbjct: 1158 LVSGRMSHQQAFVFGFETDLFVSSALIDMYSKCGQLKDARALFDEIPLRNVVSWTSMITG 1217

Query: 261  YAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTF 320
            Y +    ++A  LF +  E+     T +  G          + L + +M+          
Sbjct: 1218 YVQNEQADNALLLFKDFLEEE----TEVEDG--------NNVPLDSVVMV---------- 1255

Query: 321  SSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDN 380
             S L AC+ +      + VHGF+++  F  +  V ++L+D Y+KCG     ++VFD  + 
Sbjct: 1256 -SVLSACSRVSGKGITEGVHGFVVKKGFDGSIGVGNTLMDAYAKCGQPLVSKKVFDWMEE 1314

Query: 381  KENSMLWNTMISALTQHGYDEQAIRLFHDMVRS-SVKPDKITLAVILNACTHSGLVQEGL 439
            K++ + WN+MI+   Q G   +A+ +FH MVR   V+ + +TL+ +L AC H+G ++ G 
Sbjct: 1315 KDD-ISWNSMIAVYAQSGLSGEALEVFHGMVRHVGVRYNAVTLSAVLLACAHAGALRAG- 1372

Query: 440  TYFESMTHDLGIIPNQEHHAC----LIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHG 495
                   HD  I  + E++ C    +I++  + G  +      ++M  E +   W A+  
Sbjct: 1373 ----KCIHDQVIKMDLEYNVCVGTSIIDMYCKCGRVEMAKKTFDRMK-EKNVKSWTAMVA 1427

Query: 496  VCRIHGN----IDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQ 551
               +HG     +D+  K+V   +  N      +    S+ +A     LVE+     N  +
Sbjct: 1428 GYGMHGRAKEALDIFYKMVRAGVKPN------YITFVSVLAACSHAGLVEEGWHWFNAMK 1481

Query: 552  FKKE 555
             K +
Sbjct: 1482 HKYD 1485



 Score =  157 bits (397), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 89/291 (30%), Positives = 150/291 (51%), Gaps = 32/291 (10%)

Query: 46  RGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDV 105
           +GI     T  F+++ C    S+ LGK VH  L +    +   F+ N+LI  YFKCG   
Sbjct: 119 QGIAADKFTFPFVIKACTNFLSIDLGKVVHGSL-IKYGFSGDVFVQNNLIDFYFKCGHTR 177

Query: 106 DARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGA 165
            A KVF+K+ V+N+ S+  ++SG  + G ++ AR +FD +  ++VVSW  MI GY ++  
Sbjct: 178 FALKVFEKMRVRNVVSWTTVISGLISCGDLQEARRIFDEIPSKNVVSWTAMINGYIRNQQ 237

Query: 166 VEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSS 225
            EE L+ +K ++  +I  NE++   ++  C ++  L L R +H   +       V + ++
Sbjct: 238 PEEALELFKRMQAENIFPNEYTMVSLIKACTEMGILTLGRGIHDYAIKNCIEIGVYLGTA 297

Query: 226 IVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSW 285
           ++D Y+KCG + DA  +F+    + + TW +M++    LG                    
Sbjct: 298 LIDMYSKCGSIKDAIEVFETMPRKSLPTWNSMIT---SLG-------------------- 334

Query: 286 TTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHG 336
                    +GLGQ+AL LF+ M  + ++P+  TF   LCAC  I ++K G
Sbjct: 335 --------VHGLGQEALNLFSEMERVNVKPDAITFIGVLCACVHIKNVKEG 377



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 75/289 (25%), Positives = 126/289 (43%), Gaps = 42/289 (14%)

Query: 248 ARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTR 307
           + D L    ++  Y+  G +  A  LF ++      +W  +I   T NGL ++AL L+  
Sbjct: 56  SNDQLLTRKLIHLYSTHGRIAYAILLFYQIQNPCTFTWNLIIRANTINGLSEQALMLYKN 115

Query: 308 MMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCG- 366
           M+   I  ++ TF   + AC + +S+  GK VHG LI+  F  +  V ++LID Y KCG 
Sbjct: 116 MVCQGIAADKFTFPFVIKACTNFLSIDLGKVVHGSLIKYGFSGDVFVQNNLIDFYFKCGH 175

Query: 367 ----------------------------C--LNDGRQVFDLTDNKENSMLWNTMISALTQ 396
                                       C  L + R++FD   +K N + W  MI+   +
Sbjct: 176 TRFALKVFEKMRVRNVVSWTTVISGLISCGDLQEARRIFDEIPSK-NVVSWTAMINGYIR 234

Query: 397 HGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQE 456
           +   E+A+ LF  M   ++ P++ T+  ++ ACT  G++  G        HD  I    E
Sbjct: 235 NQQPEEALELFKRMQAENIFPNEYTMVSLIKACTEMGILTLG-----RGIHDYAIKNCIE 289

Query: 457 ----HHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHG 501
                   LI++ ++ G     +   E MP +     WN++     +HG
Sbjct: 290 IGVYLGTALIDMYSKCGSIKDAIEVFETMPRKSLP-TWNSMITSLGVHG 337



 Score = 85.5 bits (210), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 80/338 (23%), Positives = 142/338 (42%), Gaps = 56/338 (16%)

Query: 270  ASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACAS 329
            A+  +  + + N  SW ++IA   R G   +AL  F+ +  L + P + +F   + +C++
Sbjct: 1095 ATWFYKYVDKSNVHSWNSVIADLARGGDSVEALRAFSSLRKLGLIPTRSSFPCTIKSCSA 1154

Query: 330  IVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNT 389
            +  L  G+  H       F ++  V S+LIDMYSKCG L D R +FD    + N + W +
Sbjct: 1155 LCDLVSGRMSHQQAFVFGFETDLFVSSALIDMYSKCGQLKDARALFDEIPLR-NVVSWTS 1213

Query: 390  MISALTQHGYDEQAIRLFHDMVR--------SSVKPDKITLAVILNACT----------- 430
            MI+   Q+   + A+ LF D +         ++V  D + +  +L+AC+           
Sbjct: 1214 MITGYVQNEQADNALLLFKDFLEEETEVEDGNNVPLDSVVMVSVLSACSRVSGKGITEGV 1273

Query: 431  HSGLVQEGL------------------------TYFESMTHDLGIIPNQEHHACLIELLA 466
            H  +V++G                           F+ M     I  N      +I + A
Sbjct: 1274 HGFVVKKGFDGSIGVGNTLMDAYAKCGQPLVSKKVFDWMEEKDDISWNS-----MIAVYA 1328

Query: 467  QAGCSDQLMNQLEKMPYEHDSYLWNA--LHGV---CRIHGNIDMGRKVVDQLIDQNPQSS 521
            Q+G S + +     M   H    +NA  L  V   C   G +  G+ + DQ+I  + + +
Sbjct: 1329 QSGLSGEALEVFHGM-VRHVGVRYNAVTLSAVLLACAHAGALRAGKCIHDQVIKMDLEYN 1387

Query: 522  ATHGL-LSSIYSALGKGRLVEKVRQLINERQFKKEQAI 558
               G  +  +Y   G+  + +K    + E+  K   A+
Sbjct: 1388 VCVGTSIIDMYCKCGRVEMAKKTFDRMKEKNVKSWTAM 1425



 Score = 59.3 bits (142), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 47/191 (24%), Positives = 86/191 (45%), Gaps = 13/191 (6%)

Query: 332 SLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMI 391
           + KH +Q+H  +IR+   ++ ++   LI +YS  G +     +F    N   +  WN +I
Sbjct: 39  NFKHLRQIHAKIIRSGLSNDQLLTRKLIHLYSTHGRIAYAILLFYQIQNP-CTFTWNLII 97

Query: 392 SALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHS-----GLVQEGLTYFESMT 446
            A T +G  EQA+ L+ +MV   +  DK T   ++ ACT+      G V  G       +
Sbjct: 98  RANTINGLSEQALMLYKNMVCQGIAADKFTFPFVIKACTNFLSIDLGKVVHGSLIKYGFS 157

Query: 447 HDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMG 506
            D+ +  N      LI+   + G +   +   EKM   +       + G+    G++   
Sbjct: 158 GDVFVQNN------LIDFYFKCGHTRFALKVFEKMRVRNVVSWTTVISGLISC-GDLQEA 210

Query: 507 RKVVDQLIDQN 517
           R++ D++  +N
Sbjct: 211 RRIFDEIPSKN 221



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 40/175 (22%), Positives = 68/175 (38%), Gaps = 32/175 (18%)

Query: 28  ISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPT 87
           I   Q  EA+     +    I     T+  +++ C E   L LG+ +H +  +       
Sbjct: 233 IRNQQPEEALELFKRMQAENIFPNEYTMVSLIKACTEMGILTLGRGIHDY-AIKNCIEIG 291

Query: 88  TFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAE 147
            +L   LI MY KCGS  DA +V                               F+ M  
Sbjct: 292 VYLGTALIDMYSKCGSIKDAIEV-------------------------------FETMPR 320

Query: 148 RDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELK 202
           + + +WN+MI      G  +E L  +  + R ++  +  +F G+L  CV ++ +K
Sbjct: 321 KSLPTWNSMITSLGVHGLGQEALNLFSEMERVNVKPDAITFIGVLCACVHIKNVK 375


>gi|225444173|ref|XP_002268853.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21300-like [Vitis vinifera]
          Length = 853

 Score =  303 bits (776), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 166/539 (30%), Positives = 278/539 (51%), Gaps = 68/539 (12%)

Query: 49  RLPAETLAF--ILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVD 106
           R+  +++ F   L   +E  +L+ GK +H ++ +    +   FL + LI +YFKC     
Sbjct: 344 RMKPDSITFSSFLPLLSEGATLRQGKEIHCYI-IRNGVSLDVFLKSALIDIYFKCRDVEM 402

Query: 107 ARKVFD-KIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGA 165
           ARK+FD + PV                                D+V    MI GY  +G 
Sbjct: 403 ARKIFDQRTPV--------------------------------DIVVCTAMISGYVLNGM 430

Query: 166 VEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSS 225
               L+ ++ L +  +  N  + A +L  C  L  L L +++HG +L  G   +  + S+
Sbjct: 431 NNNALEIFRWLLQERMRANSVTLASVLPACAGLAALTLGKELHGHILKNGHGGSCYVGSA 490

Query: 226 IVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSW 285
           I+D YAKCG L                               + A + F  + +K+ V W
Sbjct: 491 IMDMYAKCGRL-------------------------------DLAHQTFIGISDKDAVCW 519

Query: 286 TTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIR 345
            ++I   ++NG  ++A++LF +M +   + +  + S+ L ACA++ +L +GK++H F++R
Sbjct: 520 NSMITSCSQNGKPEEAIDLFRQMGMAGTKYDCVSISAALSACANLPALHYGKEIHAFMMR 579

Query: 346 TNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIR 405
             FRS+    S+LIDMYSKCG L+   +VFD  + K N + WN++I+A   HG  + ++ 
Sbjct: 580 GAFRSDLFAESALIDMYSKCGNLDLACRVFDTMEEK-NEVSWNSIIAAYGNHGRLKDSLN 638

Query: 406 LFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELL 465
           LFH M+   ++PD +T   I++AC H+G V EG+ YF  MT +LGI+   EH+AC+++L 
Sbjct: 639 LFHGMLGDGIQPDHVTFLAIISACGHAGQVDEGIHYFRCMTEELGIMARMEHYACMVDLF 698

Query: 466 AQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHG 525
            +AG  ++    +  MP+  D+ +W  L G CR+HGN+++       L D +PQ+S  + 
Sbjct: 699 GRAGRLNEAFGMINSMPFSPDAGVWGTLLGACRLHGNVELAEVASRNLFDLDPQNSGYYV 758

Query: 526 LLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLY 584
           LLS++++  G+   V K+R L+ ER  +K    SWI++ N  H F  +D  HP    +Y
Sbjct: 759 LLSNVHANAGQWESVLKIRSLMKERGVQKVPGCSWIDVNNTTHMFVAADRSHPQSSQIY 817



 Score =  167 bits (423), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 122/489 (24%), Positives = 219/489 (44%), Gaps = 68/489 (13%)

Query: 54  TLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDK 113
           T A +L  CA    +  G ++H  L ++      + ++N L++MY KCG   DAR++FD 
Sbjct: 250 TFACVLSVCASEIMINFGSQLH-GLVVSSGLEMDSPVANTLLAMYAKCGHLFDARRLFDM 308

Query: 114 IPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFY 173
           +P  +L ++N M+SGY   G M  A  LF  M                            
Sbjct: 309 MPKTDLVTWNGMISGYVQNGFMDEASCLFHEMISA------------------------- 343

Query: 174 KVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKC 233
                  +  +  +F+  L +  +   L+  +++H  ++  G   +V + S+++D Y KC
Sbjct: 344 ------RMKPDSITFSSFLPLLSEGATLRQGKEIHCYIIRNGVSLDVFLKSALIDIYFKC 397

Query: 234 GELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYT 293
            ++  AR++FD+    D++  T M+S                               GY 
Sbjct: 398 RDVEMARKIFDQRTPVDIVVCTAMIS-------------------------------GYV 426

Query: 294 RNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTI 353
            NG+   ALE+F  ++  R+R N  T +S L ACA + +L  GK++HG +++     +  
Sbjct: 427 LNGMNNNALEIFRWLLQERMRANSVTLASVLPACAGLAALTLGKELHGHILKNGHGGSCY 486

Query: 354 VMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRS 413
           V S+++DMY+KCG L+   Q F    +K+ ++ WN+MI++ +Q+G  E+AI LF  M  +
Sbjct: 487 VGSAIMDMYAKCGRLDLAHQTFIGISDKD-AVCWNSMITSCSQNGKPEEAIDLFRQMGMA 545

Query: 414 SVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQ 473
             K D ++++  L+AC +   +  G      M        +    + LI++ ++ G  D 
Sbjct: 546 GTKYDCVSISAALSACANLPALHYGKEIHAFMMRG-AFRSDLFAESALIDMYSKCGNLDL 604

Query: 474 LMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSA 533
                + M  E +   WN++      HG +     +   ++    Q    H    +I SA
Sbjct: 605 ACRVFDTME-EKNEVSWNSIIAAYGNHGRLKDSLNLFHGMLGDGIQPD--HVTFLAIISA 661

Query: 534 LGKGRLVEK 542
            G    V++
Sbjct: 662 CGHAGQVDE 670



 Score =  161 bits (407), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 132/503 (26%), Positives = 228/503 (45%), Gaps = 83/503 (16%)

Query: 16  PNNCLIQSFLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVH 75
           P N +I+ F  +   GQ   A+     +   G      T  ++++ C    S+ LG+ VH
Sbjct: 114 PWNWMIRGFTMM---GQFDFALLFYFKMLGCGTLPDKYTFPYVIKACGGLNSVALGRVVH 170

Query: 76  LHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMM 135
             ++    +    F+ + LI  Y + G   DAR +FD++P K+   +N ML+GY   G  
Sbjct: 171 DKIQFMGFEL-DVFVGSSLIKFYSENGCIHDARYLFDRMPSKDGVLWNVMLNGYVKNGDW 229

Query: 136 KHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTIC 195
            +A  +F  M                               RR   + N  +FA +L++C
Sbjct: 230 DNATGVFMEM-------------------------------RRTETNPNSVTFACVLSVC 258

Query: 196 VKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWT 255
                +    Q+HG V+ +G   +  ++++++  YAKCG L DARRLFD     D++TW 
Sbjct: 259 ASEIMINFGSQLHGLVVSSGLEMDSPVANTLLAMYAKCGHLFDARRLFDMMPKTDLVTWN 318

Query: 256 TMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRP 315
            M+SGY + G M+ AS LF+EM                                  R++P
Sbjct: 319 GMISGYVQNGFMDEASCLFHEMISA-------------------------------RMKP 347

Query: 316 NQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVF 375
           +  TFSS L   +   +L+ GK++H ++IR     +  + S+LID+Y KC  +   R++F
Sbjct: 348 DSITFSSFLPLLSEGATLRQGKEIHCYIIRNGVSLDVFLKSALIDIYFKCRDVEMARKIF 407

Query: 376 DLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLV 435
           D      + ++   MIS    +G +  A+ +F  +++  ++ + +TLA +L AC  +GL 
Sbjct: 408 D-QRTPVDIVVCTAMISGYVLNGMNNNALEIFRWLLQERMRANSVTLASVLPAC--AGLA 464

Query: 436 QEGLTYFESMTHDLGIIPNQEHHAC-----LIELLAQAGCSDQLMNQLEKMPYEHDSYLW 490
              L   E   H   I+ N    +C     ++++ A+ G  D L +Q      + D+  W
Sbjct: 465 ALTLGK-ELHGH---ILKNGHGGSCYVGSAIMDMYAKCGRLD-LAHQTFIGISDKDAVCW 519

Query: 491 NALHGVCRIHGN----IDMGRKV 509
           N++   C  +G     ID+ R++
Sbjct: 520 NSMITSCSQNGKPEEAIDLFRQM 542



 Score =  159 bits (403), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 103/387 (26%), Positives = 171/387 (44%), Gaps = 64/387 (16%)

Query: 52  AETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVF 111
           A  L  ILQ C +   L  G++ H  + L         L   L+ MY  CG+ +DA+ +F
Sbjct: 46  APQLVSILQTCTDPSGLSQGRQAHAQM-LVNGIGYNGILGTKLLGMYVLCGAFLDAKNIF 104

Query: 112 DKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLK 171
            ++    L+                                WN MI G+   G  +  L 
Sbjct: 105 YQL---RLWCSE----------------------------PWNWMIRGFTMMGQFDFALL 133

Query: 172 FYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYA 231
           FY  +       ++++F  ++  C  L  + L R VH ++   GF  +V + SS++  Y+
Sbjct: 134 FYFKMLGCGTLPDKYTFPYVIKACGGLNSVALGRVVHDKIQFMGFELDVFVGSSLIKFYS 193

Query: 232 KCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAG 291
           + G + D                               A  LF+ MP K+ V W  ++ G
Sbjct: 194 ENGCIHD-------------------------------ARYLFDRMPSKDGVLWNVMLNG 222

Query: 292 YTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSN 351
           Y +NG    A  +F  M      PN  TF+  L  CAS + +  G Q+HG ++ +    +
Sbjct: 223 YVKNGDWDNATGVFMEMRRTETNPNSVTFACVLSVCASEIMINFGSQLHGLVVSSGLEMD 282

Query: 352 TIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMV 411
           + V ++L+ MY+KCG L D R++FD+   K + + WN MIS   Q+G+ ++A  LFH+M+
Sbjct: 283 SPVANTLLAMYAKCGHLFDARRLFDMMP-KTDLVTWNGMISGYVQNGFMDEASCLFHEMI 341

Query: 412 RSSVKPDKITLAVILNACTHSGLVQEG 438
            + +KPD IT +  L   +    +++G
Sbjct: 342 SARMKPDSITFSSFLPLLSEGATLRQG 368



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 80/307 (26%), Positives = 133/307 (43%), Gaps = 42/307 (13%)

Query: 191 ILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARD 250
           IL  C     L   RQ H Q+LV G   N ++ + ++  Y  CG   DA+ +F +     
Sbjct: 52  ILQTCTDPSGLSQGRQAHAQMLVNGIGYNGILGTKLLGMYVLCGAFLDAKNIFYQL---- 107

Query: 251 VLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMI 310
                                +L+   P      W  +I G+T  G    AL  + +M+ 
Sbjct: 108 ---------------------RLWCSEP------WNWMIRGFTMMGQFDFALLFYFKMLG 140

Query: 311 LRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLND 370
               P+++TF   + AC  + S+  G+ VH  +    F  +  V SSLI  YS+ GC++D
Sbjct: 141 CGTLPDKYTFPYVIKACGGLNSVALGRVVHDKIQFMGFELDVFVGSSLIKFYSENGCIHD 200

Query: 371 GRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACT 430
            R +FD   +K+  +LWN M++   ++G  + A  +F +M R+   P+ +T A +L+ C 
Sbjct: 201 ARYLFDRMPSKD-GVLWNVMLNGYVKNGDWDNATGVFMEMRRTETNPNSVTFACVLSVCA 259

Query: 431 HSGLVQEGLTYFESMTHDLGIIPNQEHHA----CLIELLAQAGCSDQLMNQLEKMPYEHD 486
                 E +  F S  H L +    E  +     L+ + A+ G         + MP + D
Sbjct: 260 -----SEIMINFGSQLHGLVVSSGLEMDSPVANTLLAMYAKCGHLFDARRLFDMMP-KTD 313

Query: 487 SYLWNAL 493
              WN +
Sbjct: 314 LVTWNGM 320



 Score = 99.0 bits (245), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 86/379 (22%), Positives = 158/379 (41%), Gaps = 68/379 (17%)

Query: 28  ISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPT 87
           +  G  + A+     L Q  +R  + TLA +L  CA   +L LGK +H H+ L      +
Sbjct: 426 VLNGMNNNALEIFRWLLQERMRANSVTLASVLPACAGLAALTLGKELHGHI-LKNGHGGS 484

Query: 88  TFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAE 147
            ++ + ++ MY KCG    A + F  I  K+   +N+M++  +  G  + A +LF  M  
Sbjct: 485 CYVGSAIMDMYAKCGRLDLAHQTFIGISDKDAVCWNSMITSCSQNGKPEEAIDLFRQMG- 543

Query: 148 RDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQV 207
                                G K+  V           S +  L+ C  L  L   +++
Sbjct: 544 -------------------MAGTKYDCV-----------SISAALSACANLPALHYGKEI 573

Query: 208 HGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDM 267
           H  ++   F S++   S+++D Y+KCG L  A R+FD  + ++ ++W ++++ Y   G +
Sbjct: 574 HAFMMRGAFRSDLFAESALIDMYSKCGNLDLACRVFDTMEEKNEVSWNSIIAAYGNHGRL 633

Query: 268 ESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCAC 327
           + +  LF+ M                   LG              I+P+  TF + + AC
Sbjct: 634 KDSLNLFHGM-------------------LGDG------------IQPDHVTFLAIISAC 662

Query: 328 ASIVSLKHGKQVHGFLIRTNFRSNTIVM---SSLIDMYSKCGCLNDGRQVFDLTDNKENS 384
                +  G  +H F   T        M   + ++D++ + G LN+   + +      ++
Sbjct: 663 GHAGQVDEG--IHYFRCMTEELGIMARMEHYACMVDLFGRAGRLNEAFGMINSMPFSPDA 720

Query: 385 MLWNTMISALTQHGYDEQA 403
            +W T++ A   HG  E A
Sbjct: 721 GVWGTLLGACRLHGNVELA 739



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 66/271 (24%), Positives = 123/271 (45%), Gaps = 14/271 (5%)

Query: 19  CLIQSFLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHL 78
           C      S    G+  EAI     +   G +    +++  L  CA   +L  GK +H  +
Sbjct: 518 CWNSMITSCSQNGKPEEAIDLFRQMGMAGTKYDCVSISAALSACANLPALHYGKEIHAFM 577

Query: 79  KLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHA 138
                ++   F  + LI MY KCG+   A +VFD +  KN  S+N++++ Y N G +K +
Sbjct: 578 MRGAFRS-DLFAESALIDMYSKCGNLDLACRVFDTMEEKNEVSWNSIIAAYGNHGRLKDS 636

Query: 139 RNLFDNM----AERDVVSWNTMIIGYAKSGAVEEGLKFYKVL-RRFSISCNEFSFAGILT 193
            NLF  M     + D V++  +I     +G V+EG+ +++ +     I      +A ++ 
Sbjct: 637 LNLFHGMLGDGIQPDHVTFLAIISACGHAGQVDEGIHYFRCMTEELGIMARMEHYACMVD 696

Query: 194 ICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCG--ELSD--ARRLFDETDAR 249
           +  +   L    +  G +    F  +  +  +++ A    G  EL++  +R LFD  D +
Sbjct: 697 LFGRAGRLN---EAFGMINSMPFSPDAGVWGTLLGACRLHGNVELAEVASRNLFD-LDPQ 752

Query: 250 DVLTWTTMVSGYAKLGDMESASKLFNEMPEK 280
           +   +  + + +A  G  ES  K+ + M E+
Sbjct: 753 NSGYYVLLSNVHANAGQWESVLKIRSLMKER 783



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 52/209 (24%), Positives = 83/209 (39%), Gaps = 5/209 (2%)

Query: 322 SCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNK 381
           S L  C     L  G+Q H  ++      N I+ + L+ MY  CG   D + +F      
Sbjct: 51  SILQTCTDPSGLSQGRQAHAQMLVNGIGYNGILGTKLLGMYVLCGAFLDAKNIF-YQLRL 109

Query: 382 ENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTY 441
             S  WN MI   T  G  + A+  +  M+     PDK T   ++ AC     V  G   
Sbjct: 110 WCSEPWNWMIRGFTMMGQFDFALLFYFKMLGCGTLPDKYTFPYVIKACGGLNSVALGRVV 169

Query: 442 FESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHG 501
            + +   +G   +    + LI+  ++ GC        ++MP   D  LWN +      +G
Sbjct: 170 HDKIQF-MGFELDVFVGSSLIKFYSENGCIHDARYLFDRMP-SKDGVLWNVMLNGYVKNG 227

Query: 502 NIDMGRKVVDQL--IDQNPQSSATHGLLS 528
           + D    V  ++   + NP S     +LS
Sbjct: 228 DWDNATGVFMEMRRTETNPNSVTFACVLS 256


>gi|297793123|ref|XP_002864446.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297310281|gb|EFH40705.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 531

 Score =  303 bits (776), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 156/470 (33%), Positives = 272/470 (57%), Gaps = 6/470 (1%)

Query: 130 ANLGMMKHARNLFDNMAERDVVSWNTMIIGYA---KSGAVEEGLKFYKVLRRFSISCNEF 186
           +N G +++A ++F +    +    NTMI   +   +  A    +  Y+    F    + F
Sbjct: 58  SNAGHLRYAYSVFTHQPFPNTYLHNTMIRALSLVDERNAHSIAITVYRKFWAFCAKPDTF 117

Query: 187 SFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDET 246
           +F  +L I V++ ++   RQVHGQ +V GF S+V + + ++  Y+ CG L DAR++FDE 
Sbjct: 118 TFPFVLKIVVRVSDVWFGRQVHGQAVVFGFDSSVHVVTGLIQMYSSCGGLGDARKVFDEM 177

Query: 247 DARDVLTWTTMVSGYAKLGDMESASKLFNEMP--EKNPVSWTTLIAGYTRNGLGQKALEL 304
             RDV  W  +++GY K+G+M+ A  L   MP   +N VSWT +I+GY R+G   +A+E+
Sbjct: 178 RVRDVNVWNALLAGYGKVGEMDEARGLLEMMPCWVRNAVSWTCVISGYARSGRASEAIEV 237

Query: 305 FTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSK 364
           F RM++  + P++ T  + L ACA + SL+ G+++  ++          + +++IDMY+K
Sbjct: 238 FQRMLMENVDPDEVTLLAVLSACADLGSLELGERICSYVDHRGMNRAVSLNNAVIDMYAK 297

Query: 365 CGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAV 424
            G +    +VF+ + N+ N + W T+I+ L  HG+  +A+ +F  MV++ VKP+ +T   
Sbjct: 298 SGNITKALEVFE-SVNERNVVTWTTIITGLATHGHGAEALVMFDRMVKAGVKPNDVTFIA 356

Query: 425 ILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYE 484
           IL+AC+H G V  G  +F SM    GI PN EH+ C+I+LL +AG   +    ++ MP+E
Sbjct: 357 ILSACSHVGWVDLGNRFFNSMRSKYGINPNIEHYGCMIDLLGRAGKLREAEEVIKSMPFE 416

Query: 485 HDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVR 544
            ++ +W +L     +H +ID+G + + QLI   P +S  + LL+++YS LG+      +R
Sbjct: 417 SNAAIWGSLLAASNVHHDIDVGERALYQLIKLEPNNSGNYMLLANLYSNLGRWDESRMMR 476

Query: 545 QLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQM 594
           +++     KK    S IE+EN+V+ F   D  HP  + ++ +L+++  Q+
Sbjct: 477 KMMKGIGVKKLAGESSIEVENRVYKFISGDLSHPQVEKIHELLQEMDLQI 526



 Score =  146 bits (369), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 92/363 (25%), Positives = 176/363 (48%), Gaps = 37/363 (10%)

Query: 54  TLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDK 113
           T  F+L+       +  G++VH    +    +    ++  LI MY  CG   DARKVFD+
Sbjct: 118 TFPFVLKIVVRVSDVWFGRQVHGQAVVFGFDSSVHVVTG-LIQMYSSCGGLGDARKVFDE 176

Query: 114 IPVKNLFSYNNMLSGYANLGMMKHARNLFDNMA--ERDVVSWNTMIIGYAKSGAVEEGLK 171
           + V+++  +N +L+GY  +G M  AR L + M    R+ VSW  +I GYA+SG   E ++
Sbjct: 177 MRVRDVNVWNALLAGYGKVGEMDEARGLLEMMPCWVRNAVSWTCVISGYARSGRASEAIE 236

Query: 172 FYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYA 231
            ++ +   ++  +E +   +L+ C  L  L+L  ++   V   G    V ++++++D YA
Sbjct: 237 VFQRMLMENVDPDEVTLLAVLSACADLGSLELGERICSYVDHRGMNRAVSLNNAVIDMYA 296

Query: 232 KCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAG 291
           K G ++ A  +F+  + R+V+TWTT+++G A                             
Sbjct: 297 KSGNITKALEVFESVNERNVVTWTTIITGLAT---------------------------- 328

Query: 292 YTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSN 351
              +G G +AL +F RM+   ++PN  TF + L AC+ +  +  G +    + R+ +  N
Sbjct: 329 ---HGHGAEALVMFDRMVKAGVKPNDVTFIAILSACSHVGWVDLGNRFFNSM-RSKYGIN 384

Query: 352 TIV--MSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHD 409
             +     +ID+  + G L +  +V      + N+ +W ++++A   H   +   R  + 
Sbjct: 385 PNIEHYGCMIDLLGRAGKLREAEEVIKSMPFESNAAIWGSLLAASNVHHDIDVGERALYQ 444

Query: 410 MVR 412
           +++
Sbjct: 445 LIK 447



 Score = 61.2 bits (147), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 53/223 (23%), Positives = 105/223 (47%), Gaps = 12/223 (5%)

Query: 12  RKNLPNNCLIQSFLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLG 71
           R  +   C+I  +      G+ SEAI     +    +     TL  +L  CA+  SL+LG
Sbjct: 213 RNAVSWTCVISGY---ARSGRASEAIEVFQRMLMENVDPDEVTLLAVLSACADLGSLELG 269

Query: 72  KRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYAN 131
           +R+  ++         + L+N +I MY K G+   A +VF+ +  +N+ ++  +++G A 
Sbjct: 270 ERICSYVDHRGMNRAVS-LNNAVIDMYAKSGNITKALEVFESVNERNVVTWTTIITGLAT 328

Query: 132 LGMMKHARNLFDNMAERDV----VSWNTMIIGYAKSGAVEEGLKFYKVLR-RFSISCNEF 186
            G    A  +FD M +  V    V++  ++   +  G V+ G +F+  +R ++ I+ N  
Sbjct: 329 HGHGAEALVMFDRMVKAGVKPNDVTFIAILSACSHVGWVDLGNRFFNSMRSKYGINPNIE 388

Query: 187 SFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDA 229
            +  ++ +  +  +L+   +V   +    F SN  I  S++ A
Sbjct: 389 HYGCMIDLLGRAGKLREAEEV---IKSMPFESNAAIWGSLLAA 428


>gi|147791850|emb|CAN61826.1| hypothetical protein VITISV_027628 [Vitis vinifera]
          Length = 688

 Score =  303 bits (776), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 191/597 (31%), Positives = 321/597 (53%), Gaps = 39/597 (6%)

Query: 21  IQSFLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKL 80
           + SFLSL +    +  ++ L LL   G   PA     + ++C+  + LKL     LH ++
Sbjct: 89  VLSFLSLAAACS-TAGVTDL-LLNVNGSHCPAR----LCEKCSSMRGLKL-----LHAQI 137

Query: 81  TQRK-TPTTFLSNHLISMYFKCGSDVD-----ARKVFDKIPVKNLFSYNNMLSGYANLGM 134
                T  T     LIS    C  D       A+++FD+IP  N F YN+++ GY+N   
Sbjct: 138 ILHGLTNETLTLGKLISF---CAVDDAGDLQYAQRMFDQIPQPNKFMYNSLIRGYSNSDD 194

Query: 135 MKHARNLFDNMAERDVVSWNTMIIGYAKSG-----AVEEGLKFYKVLRRFSISCNEFSFA 189
              A  LF  M    + S N   + +         A  E +  + +  +  I    F   
Sbjct: 195 PIDAVLLFRRMICSGL-SPNEFTLPFVLKACGCKSAYWEAVLVHGLAIKLGIGSLVFVQN 253

Query: 190 GILTICVKLEELKLTRQV------------HGQVLVTGFLSNVVISSSIVDAYAKCGELS 237
            ++ + V    +   R++            +  + +TG   ++++ +++ D YAKCG L 
Sbjct: 254 ALIAVYVVCGLIHCARKLFDDITDKTLVSWNSMIEITGVKIDIIVRNALXDMYAKCGNLH 313

Query: 238 DARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGL 297
            A+ +FD T  ++V++WT+M+S YA+ G +E A ++F++MP KN VSW ++I+ Y R G 
Sbjct: 314 SAQAIFDRTQEKNVVSWTSMISAYAQHGSIEVARQIFDQMPGKNVVSWNSMISCYLREGQ 373

Query: 298 GQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSS 357
            ++AL+LF +M   R+ P++ T  S L AC+ +  L  GK++H +++         + +S
Sbjct: 374 YREALDLFNKMRNSRVVPDEATLVSILAACSQLGDLVMGKKIHNYILSNKGAYGVTLYNS 433

Query: 358 LIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKP 417
           LIDMY+KCG +     +F L    +N + WN +I AL  HG   +AI+LF +M      P
Sbjct: 434 LIDMYAKCGPVVTALDIF-LEMPGKNLVSWNVIIGALALHGCGLEAIKLFEEMQADGTLP 492

Query: 418 DKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQ 477
           D+ITL  +L+AC+HSGLV  GL YF+ M     +    EH+AC+++LL + G   + +  
Sbjct: 493 DEITLTGLLSACSHSGLVDMGLYYFDRMGVIYRVXREIEHYACMVDLLGRGGLLGEAIEL 552

Query: 478 LEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKG 537
           + +MP + D  +W AL G CRIHGN+++G++++ QL++  P S   + L+S+IY    + 
Sbjct: 553 IGRMPMKPDVVVWGALLGACRIHGNVEIGKQILKQLLELEPHSGGLYVLISNIYWEAQRW 612

Query: 538 RLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQM 594
             V+K+R+L+ +R  KK +AIS IEI+  ++ F V D  H +   +Y++L+QL   +
Sbjct: 613 EDVKKIRKLMIDRGIKKGRAISSIEIDGCIYEFMVDDKRHKISSSIYAMLDQLTDHL 669


>gi|242065790|ref|XP_002454184.1| hypothetical protein SORBIDRAFT_04g026300 [Sorghum bicolor]
 gi|241934015|gb|EES07160.1| hypothetical protein SORBIDRAFT_04g026300 [Sorghum bicolor]
          Length = 530

 Score =  303 bits (775), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 178/541 (32%), Positives = 284/541 (52%), Gaps = 31/541 (5%)

Query: 58  ILQQCAESKSLKLGKRVHLHLKLTQRKTP--TTFLSNHLISMY-FKCGSDVDARKVFDKI 114
           +L +C+    L+   ++H H  +  R     TTF   HLI    F+      AR +FD  
Sbjct: 15  VLSRCSTRAHLE---QLHAHAFVAGRAAAQTTTF---HLIRFAAFRLSCLTYARHLFDAT 68

Query: 115 PVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYK 174
           P  ++F Y+ +LS Y +      +                      A + A +    F +
Sbjct: 69  PHPSVFLYSAILSAYVSAAATASSYAH-------------------AHAHARDALALFLR 109

Query: 175 VLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCG 234
           +LR    + N+F +  +L     +  + + + +H     +GF  + +I +S++D Y++ G
Sbjct: 110 MLRHGRPAPNQFVYPLVLRAASGV-GVGIVKSIHSHACKSGFCGHDIIRTSVLDGYSRHG 168

Query: 235 ELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTR 294
            ++DAR+LFD    R+V++WT +VSGYA+ G +  A  LF  MPE++  +W  +IAG ++
Sbjct: 169 MMADARKLFDGLTERNVVSWTALVSGYARAGKVGDAIVLFERMPERDVAAWNAIIAGCSQ 228

Query: 295 NGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIV 354
           NGL  +A+ +F RM+    RPN  T S  L AC  +  LK GK +H +  RT     + V
Sbjct: 229 NGLFVEAVGIFGRMVGAGFRPNATTVSCVLSACGHLGMLKIGKLIHCYAWRTCVGFGSSV 288

Query: 355 MSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSS 414
           ++ LIDMY KCG L   R +FD   ++  +  WN++I+ L  HG+ + AI +F++M    
Sbjct: 289 LNGLIDMYGKCGNLEGARWIFDEVSDRSLTT-WNSLINCLALHGHSKCAISVFNEMRGEG 347

Query: 415 VKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQL 474
           V+PD +T   +LNACTH G V EG+ YFE M H+ GI P  EH+ C+I+LL +AG     
Sbjct: 348 VEPDVVTFVGLLNACTHGGFVDEGIRYFELMQHEHGIEPEIEHYGCIIDLLGRAGRFQDA 407

Query: 475 MNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSAL 534
           +N +  M  E D  +W +L   CR+H  ++     + +L++ +P ++    +L+++YS  
Sbjct: 408 LNVISDMRIEADEVMWGSLLNACRVHRQVEFAELAIRKLLELDPNNANYVVMLANVYSEG 467

Query: 535 GKGRLVEKVRQLINERQF-KKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQ 593
           G    V KVR+ + E    KK    SWIE++ K H F   D  HP  + +Y  LE LA  
Sbjct: 468 GLWEEVRKVRKFVKEENIGKKLPGCSWIEVDRKTHRFYSGDDAHPESENIYDTLEDLAAS 527

Query: 594 M 594
           M
Sbjct: 528 M 528



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 44/151 (29%), Positives = 82/151 (54%), Gaps = 5/151 (3%)

Query: 31  GQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFL 90
           G   EA+     +   G R  A T++ +L  C     LK+GK +H +   T     ++ L
Sbjct: 230 GLFVEAVGIFGRMVGAGFRPNATTVSCVLSACGHLGMLKIGKLIHCYAWRTCVGFGSSVL 289

Query: 91  SNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNM----A 146
            N LI MY KCG+   AR +FD++  ++L ++N++++  A  G  K A ++F+ M     
Sbjct: 290 -NGLIDMYGKCGNLEGARWIFDEVSDRSLTTWNSLINCLALHGHSKCAISVFNEMRGEGV 348

Query: 147 ERDVVSWNTMIIGYAKSGAVEEGLKFYKVLR 177
           E DVV++  ++      G V+EG++++++++
Sbjct: 349 EPDVVTFVGLLNACTHGGFVDEGIRYFELMQ 379


>gi|224080303|ref|XP_002306089.1| predicted protein [Populus trichocarpa]
 gi|222849053|gb|EEE86600.1| predicted protein [Populus trichocarpa]
          Length = 677

 Score =  303 bits (775), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 167/537 (31%), Positives = 290/537 (54%), Gaps = 8/537 (1%)

Query: 71  GKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVK---NLFSYNNMLS 127
           G+++H ++  T     + F+ + LI MY KCG   +A +VF     +   +L S N M++
Sbjct: 142 GRQLHSYMVKTGNDR-SGFVVSSLIDMYSKCGCFKEACQVFKGCEREGGFDLVSKNAMVA 200

Query: 128 GYANLGMMKHARNLFDNMAE-RDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEF 186
            Y   G M+ A  LF   +E  D VSWNT+I GY ++G   E LK +  +    +  NE 
Sbjct: 201 AYCREGDMEMALRLFWRESELNDSVSWNTLISGYVQNGYPVEALKLFVCMGENGVKWNEH 260

Query: 187 SFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDET 246
           +F  +L+ C  L  LK+ +++H  +L  G  S+  + S IVD Y KCG +  A  L    
Sbjct: 261 TFGSVLSACADLRNLKIGKEMHAWILKNGLGSSAFVESGIVDVYCKCGNMKYAESLLLTR 320

Query: 247 DARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFT 306
             R   + T+M+ G++  G+M  A +LF+ + EKN + W  L +GY +    +   EL  
Sbjct: 321 GVRSSFSITSMIVGFSSQGNMVEACRLFDSLEEKNSIVWAALFSGYVKLKQCEAFFELLR 380

Query: 307 RMMILRIR-PNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKC 365
             +      P+     S    CA   +L  GKQ+HG++ R     +    +++IDMYSKC
Sbjct: 381 EYIAKEAAIPDALILISAFNVCAFQAALGPGKQIHGYVFRMGIEMDMKTTTAMIDMYSKC 440

Query: 366 GCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVI 425
           G +    ++F L   + + +L+N M++    HG++ +AI LF +M+   V PD +T   +
Sbjct: 441 GSIPYAEKLF-LKVIERDLVLYNVMLAGYAHHGHEIKAINLFQEMLERGVGPDAVTFVAL 499

Query: 426 LNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEH 485
           L+AC H GLV  G   F SMT D  I+P  +H+AC+I+L  +A   ++++  ++++P EH
Sbjct: 500 LSACRHRGLVDLGEKTFYSMTEDYHILPETDHYACMIDLYGRASQLEKMVLFMQRIPMEH 559

Query: 486 -DSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVR 544
            D+ +  A    CR++ N ++ ++  ++L++    S A +  L+++Y+A G    + ++R
Sbjct: 560 QDAAVVGAFFNACRLNNNTELAKEAEEKLLNIEGDSGARYVQLANVYAAEGNWAEMGRIR 619

Query: 545 QLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQMGEDAPSL 601
           + +  ++ KK    SW+ ++N+VH+F+  D  H   + +YS+LE L  ++ E A + 
Sbjct: 620 REMRGKEAKKFAGCSWVYLDNEVHSFTSGDRTHTKAESIYSMLEFLMAELYEIAGAF 676



 Score =  173 bits (438), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 110/352 (31%), Positives = 191/352 (54%), Gaps = 9/352 (2%)

Query: 66  KSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNM 125
           +SLK G   H+   +    T     SN L+ +Y K     +A+K+FD++P +N +S+N +
Sbjct: 2   RSLKDGLMRHVR-SIKSGFTLPILTSNQLVHLYSKHCLINEAQKLFDEMPQRNTYSWNTI 60

Query: 126 LSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEE-GLKFYKVLR--RFSIS 182
           +S +     +  A+++FD+ + RD+V++N+M+ GY      E   L+ +  ++  R  I 
Sbjct: 61  ISAHIKSQNLAQAKSIFDSASVRDLVTYNSMLSGYVSVDGYERNALELFVEMQSIRNEIE 120

Query: 183 CNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRL 242
            ++ +   ++ +  KL      RQ+H  ++ TG   +  + SS++D Y+KCG   +A ++
Sbjct: 121 IDDLTITSMVNLFSKLCNSCYGRQLHSYMVKTGNDRSGFVVSSLIDMYSKCGCFKEACQV 180

Query: 243 F---DETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKN-PVSWTTLIAGYTRNGLG 298
           F   +     D+++   MV+ Y + GDME A +LF    E N  VSW TLI+GY +NG  
Sbjct: 181 FKGCEREGGFDLVSKNAMVAAYCREGDMEMALRLFWRESELNDSVSWNTLISGYVQNGYP 240

Query: 299 QKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSL 358
            +AL+LF  M    ++ N+HTF S L ACA + +LK GK++H ++++    S+  V S +
Sbjct: 241 VEALKLFVCMGENGVKWNEHTFGSVLSACADLRNLKIGKEMHAWILKNGLGSSAFVESGI 300

Query: 359 IDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDM 410
           +D+Y KCG +     +  LT    +S    +MI   +  G   +A RLF  +
Sbjct: 301 VDVYCKCGNMKYAESLL-LTRGVRSSFSITSMIVGFSSQGNMVEACRLFDSL 351



 Score =  119 bits (298), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 78/288 (27%), Positives = 142/288 (49%), Gaps = 15/288 (5%)

Query: 18  NCLIQSFLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLH 77
           N LI  +   +  G   EA+     + + G++    T   +L  CA+ ++LK+GK +H  
Sbjct: 228 NTLISGY---VQNGYPVEALKLFVCMGENGVKWNEHTFGSVLSACADLRNLKIGKEMHAW 284

Query: 78  LKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKH 137
           + L      + F+ + ++ +Y KCG+   A  +     V++ FS  +M+ G+++ G M  
Sbjct: 285 I-LKNGLGSSAFVESGIVDVYCKCGNMKYAESLLLTRGVRSSFSITSMIVGFSSQGNMVE 343

Query: 138 ARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGIL----T 193
           A  LFD++ E++ + W  +  GY K    E    F+++LR +         A IL     
Sbjct: 344 ACRLFDSLEEKNSIVWAALFSGYVKLKQCE---AFFELLREYIAKEAAIPDALILISAFN 400

Query: 194 ICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLT 253
           +C     L   +Q+HG V   G   ++  +++++D Y+KCG +  A +LF +   RD++ 
Sbjct: 401 VCAFQAALGPGKQIHGYVFRMGIEMDMKTTTAMIDMYSKCGSIPYAEKLFLKVIERDLVL 460

Query: 254 WTTMVSGYAKLGDMESASKLFNEMPEK----NPVSWTTLIAGYTRNGL 297
           +  M++GYA  G    A  LF EM E+    + V++  L++     GL
Sbjct: 461 YNVMLAGYAHHGHEIKAINLFQEMLERGVGPDAVTFVALLSACRHRGL 508


>gi|297737809|emb|CBI27010.3| unnamed protein product [Vitis vinifera]
          Length = 481

 Score =  303 bits (775), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 172/485 (35%), Positives = 256/485 (52%), Gaps = 44/485 (9%)

Query: 107 ARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAV 166
           AR++FD+IP  N+  +N+M  GYA     +  R +F  M ER+VV+W +MI GY  S   
Sbjct: 4   ARQLFDQIPDPNIALWNSMFRGYAQ---SESYREIFCEMFERNVVAWTSMINGYILSAD- 59

Query: 167 EEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSI 226
                                    L    +L +L   R             +VV+ + +
Sbjct: 60  -------------------------LVSARRLFDLAPER-------------DVVLWNIM 81

Query: 227 VDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWT 286
           V  Y + G++ +AR+LF E   RDV+ W T++ GYA  G++E+   LF EMPE+N  SW 
Sbjct: 82  VSGYIEGGDMVEARKLFHEMPNRDVMFWNTVLKGYATNGNVEALEGLFEEMPERNIFSWN 141

Query: 287 TLIAGYTRNGLGQKALELFTRMMILR-IRPNQHTFSSCLCACASIVSLKHGKQVHGFLIR 345
            LI GY  NGL  + L  F RM+    + PN  T  + L ACA + +L  GK VH +   
Sbjct: 142 ALIGGYAHNGLFFEVLGSFKRMLSESDVPPNDATLVTVLSACARLGALDLGKWVHVYAES 201

Query: 346 TNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIR 405
           +  + N  V ++L+DMY+KCG + +   VF   D K+  + WNT+I  L  H     A+ 
Sbjct: 202 SGLKGNVYVGNALMDMYAKCGIIENAISVFRGMDTKD-LISWNTLIGGLAMHSRGADALN 260

Query: 406 LFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELL 465
           LF  M  +  KPD IT   IL ACTH GLV++G  YF+SM  D  I+P  EH+ C++++L
Sbjct: 261 LFFQMKNAGQKPDGITFIGILCACTHMGLVEDGFAYFQSMADDYLIMPQIEHYGCMVDML 320

Query: 466 AQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHG 525
           A+AG  +Q M  + KMP E D  +W  L G CRI+ N+++    + +LI+  P++ A + 
Sbjct: 321 ARAGRLEQAMAFVRKMPVEADGVIWAGLLGACRIYKNVELAELALQRLIELEPKNPANYV 380

Query: 526 LLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYS 585
           +LS+IY   G+   V +++  + +  FKK    S IE+ + V  F   D  HP  + +Y 
Sbjct: 381 MLSNIYGDAGRWEDVARLKVAMRDTGFKKLPGCSLIEVNDAVVEFYSLDERHPQIEEIYG 440

Query: 586 VLEQL 590
           VL  L
Sbjct: 441 VLRGL 445



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 83/311 (26%), Positives = 147/311 (47%), Gaps = 43/311 (13%)

Query: 90  LSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERD 149
           L N ++S Y + G  V+ARK+F ++P +++  +N +L GYA  G ++    LF+ M ER+
Sbjct: 77  LWNIMVSGYIEGGDMVEARKLFHEMPNRDVMFWNTVLKGYATNGNVEALEGLFEEMPERN 136

Query: 150 VVSWNTMIIGYAKSGAVEEGL-KFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVH 208
           + SWN +I GYA +G   E L  F ++L    +  N+ +   +L+ C +L  L L + VH
Sbjct: 137 IFSWNALIGGYAHNGLFFEVLGSFKRMLSESDVPPNDATLVTVLSACARLGALDLGKWVH 196

Query: 209 GQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDME 268
                +G   NV + ++++D YAKCG + +A  +F   D +D+++W T++ G        
Sbjct: 197 VYAESSGLKGNVYVGNALMDMYAKCGIIENAISVFRGMDTKDLISWNTLIGG-------- 248

Query: 269 SASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACA 328
                               +A ++R   G  AL LF +M     +P+  TF   LCAC 
Sbjct: 249 --------------------LAMHSR---GADALNLFFQMKNAGQKPDGITFIGILCACT 285

Query: 329 SIVSLKHGKQVHGFLIRTNFRSNTIVMSS------LIDMYSKCGCLNDGRQVFDLTDNKE 382
            +     G    GF    +   + ++M        ++DM ++ G L            + 
Sbjct: 286 HM-----GLVEDGFAYFQSMADDYLIMPQIEHYGCMVDMLARAGRLEQAMAFVRKMPVEA 340

Query: 383 NSMLWNTMISA 393
           + ++W  ++ A
Sbjct: 341 DGVIWAGLLGA 351



 Score = 63.2 bits (152), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 85/352 (24%), Positives = 145/352 (41%), Gaps = 82/352 (23%)

Query: 31  GQLSEAISSLD-LLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTF 89
           G   E + S   +L++  +     TL  +L  CA   +L LGK VH++ + +  K    +
Sbjct: 151 GLFFEVLGSFKRMLSESDVPPNDATLVTVLSACARLGALDLGKWVHVYAESSGLKG-NVY 209

Query: 90  LSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYA------------------- 130
           + N L+ MY KCG   +A  VF  +  K+L S+N ++ G A                   
Sbjct: 210 VGNALMDMYAKCGIIENAISVFRGMDTKDLISWNTLIGGLAMHSRGADALNLFFQMKNAG 269

Query: 131 ----------------NLGMMKHARNLFDNMAERDVV-----SWNTMIIGYAKSGAVEEG 169
                           ++G+++     F +MA+  ++      +  M+   A++G +E+ 
Sbjct: 270 QKPDGITFIGILCACTHMGLVEDGFAYFQSMADDYLIMPQIEHYGCMVDMLARAGRLEQA 329

Query: 170 LKFYKVLRRFSISCNEFSFAGILTIC-----VKLEELKLTRQVHGQVLVTGFLSNVVISS 224
           + F   +R+  +  +   +AG+L  C     V+L EL L R +    L     +N V+ S
Sbjct: 330 MAF---VRKMPVEADGVIWAGLLGACRIYKNVELAELALQRLIE---LEPKNPANYVMLS 383

Query: 225 SIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLG-----DMESASKLFNEMPE 279
           +I   Y   G   D  RL  +   RD        +G+ KL      ++  A   F  + E
Sbjct: 384 NI---YGDAGRWEDVARL--KVAMRD--------TGFKKLPGCSLIEVNDAVVEFYSLDE 430

Query: 280 KNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQ-------HTFSSCL 324
           ++P      I G  R GL  K L  F  +  + +  NQ       H+FS C+
Sbjct: 431 RHPQ--IEEIYGVLR-GL-VKVLRSFGYITCIFLFINQIFYCLDYHSFSGCM 478


>gi|115471325|ref|NP_001059261.1| Os07g0239600 [Oryza sativa Japonica Group]
 gi|33146689|dbj|BAC80084.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|50510012|dbj|BAD30625.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113610797|dbj|BAF21175.1| Os07g0239600 [Oryza sativa Japonica Group]
          Length = 720

 Score =  303 bits (775), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 171/575 (29%), Positives = 298/575 (51%), Gaps = 45/575 (7%)

Query: 30  KGQLSEAISSLDLLAQRGIRLP-AETLAFILQQCAESKSLKLGKRVH-------LHLKLT 81
           +G+ ++ + +   +   G   P A  LA +++ CA    ++ GKRVH       +HL + 
Sbjct: 89  RGRYADGMRAFAEMLAEGEATPNAFVLAAVVRCCAGMGDVESGKRVHGWMLRNGVHLDVV 148

Query: 82  QRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNL 141
                   L N ++ MY KCG    AR+VF  +  ++  S+N  +      G +  +  L
Sbjct: 149 --------LCNAVLDMYAKCGQFERARRVFGAMAERDAVSWNIAIGACIQSGDILGSMQL 200

Query: 142 FDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEEL 201
           FD    RD  SWNT+I G  +SG   + L   + + +  +  N ++++    +   L   
Sbjct: 201 FDESPLRDTTSWNTIISGLMRSGHAADALSHLRRMAQAGVVFNHYTYSTAFVLAGMLLLP 260

Query: 202 KLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGY 261
            L RQ+HG+VL+     +  + SS++D Y KCG L  A  +FD         W+ +    
Sbjct: 261 DLGRQLHGRVLIAALEGDAFVRSSLMDMYCKCGLLEAAASVFDH--------WSPLTR-- 310

Query: 262 AKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFS 321
               DM  A              W+T++AGY +NG  ++AL+LF RM+   +  ++ T +
Sbjct: 311 ----DMNFA--------------WSTMVAGYVQNGREEEALDLFRRMLREGVAADRFTLT 352

Query: 322 SCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNK 381
           S   ACA++  ++ G+QVHG + +  ++ +  + S+++DMY+KCG L D R +FD    K
Sbjct: 353 SVAAACANVGMVEQGRQVHGCVEKLWYKLDAPLASAIVDMYAKCGNLEDARSIFDRACTK 412

Query: 382 ENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTY 441
            N  +W +M+ +   HG    AI LF  M    + P++ITL  +L+AC+H GLV EG  Y
Sbjct: 413 -NIAVWTSMLCSYASHGQGRIAIELFERMTAEKMTPNEITLVGVLSACSHVGLVSEGELY 471

Query: 442 FESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHG 501
           F+ M  + GI+P+ EH+ C+++L  ++G  D+  N +E+    H++ +W  L   CR+H 
Sbjct: 472 FKQMQEEYGIVPSIEHYNCIVDLYGRSGLLDKAKNFIEENNINHEAIVWKTLLSACRLHQ 531

Query: 502 NIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWI 561
           + +  +   ++L+      + ++ +LS+IY+   K     ++R  + ER+ +K+   SWI
Sbjct: 532 HNEYAKLASEKLVQLEQCDAGSYVMLSNIYATNNKWHDTFELRVSMQERKVRKQPGRSWI 591

Query: 562 EIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQMGE 596
            ++N VH F   D+ HP    +Y+ LE+L  ++ E
Sbjct: 592 HLKNTVHTFVAGDASHPQSAEIYAYLEKLVERLKE 626



 Score =  191 bits (484), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 117/422 (27%), Positives = 208/422 (49%), Gaps = 40/422 (9%)

Query: 138 ARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLK-FYKVLRRFSISCNEFSFAGILTICV 196
           AR +FD    R    W   I G A+ G   +G++ F ++L     + N F  A ++  C 
Sbjct: 64  ARGVFDERPTRTAPVWTLTISGCARRGRYADGMRAFAEMLAEGEATPNAFVLAAVVRCCA 123

Query: 197 KLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTT 256
            + +++  ++VHG +L  G   +VV+ ++++D YAKCG+   ARR+F     RD ++W  
Sbjct: 124 GMGDVESGKRVHGWMLRNGVHLDVVLCNAVLDMYAKCGQFERARRVFGAMAERDAVSWNI 183

Query: 257 MVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPN 316
            +    + GD+  + +LF+E P ++  SW T+I+G  R+G    AL    RM    +  N
Sbjct: 184 AIGACIQSGDILGSMQLFDESPLRDTTSWNTIISGLMRSGHAADALSHLRRMAQAGVVFN 243

Query: 317 QHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFD 376
            +T+S+       ++    G+Q+HG ++      +  V SSL+DMY KCG L     VFD
Sbjct: 244 HYTYSTAFVLAGMLLLPDLGRQLHGRVLIAALEGDAFVRSSLMDMYCKCGLLEAAASVFD 303

Query: 377 LTD--NKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGL 434
                 ++ +  W+TM++   Q+G +E+A+ LF  M+R  V  D+ TL  +  AC + G+
Sbjct: 304 HWSPLTRDMNFAWSTMVAGYVQNGREEEALDLFRRMLREGVAADRFTLTSVAAACANVGM 363

Query: 435 VQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALH 494
           V++G                ++ H C                 +EK+ Y+ D+ L +A+ 
Sbjct: 364 VEQG----------------RQVHGC-----------------VEKLWYKLDAPLASAIV 390

Query: 495 GVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRL-VEKVRQLINERQFK 553
            +    GN++  R + D+   +N   +    +L S Y++ G+GR+ +E   ++  E+   
Sbjct: 391 DMYAKCGNLEDARSIFDRACTKNI--AVWTSMLCS-YASHGQGRIAIELFERMTAEKMTP 447

Query: 554 KE 555
            E
Sbjct: 448 NE 449



 Score = 79.3 bits (194), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 53/232 (22%), Positives = 99/232 (42%), Gaps = 36/232 (15%)

Query: 224 SSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPV 283
           +S++  + +     DAR +FDE   R    WT  +SG A+ G      + F EM  +   
Sbjct: 49  ASVLRFWVRRRRFHDARGVFDERPTRTAPVWTLTISGCARRGRYADGMRAFAEMLAEGEA 108

Query: 284 SWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFL 343
           +                              PN    ++ +  CA +  ++ GK+VHG++
Sbjct: 109 T------------------------------PNAFVLAAVVRCCAGMGDVESGKRVHGWM 138

Query: 344 IRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQA 403
           +R     + ++ ++++DMY+KCG     R+VF     + +++ WN  I A  Q G    +
Sbjct: 139 LRNGVHLDVVLCNAVLDMYAKCGQFERARRVFGAMAER-DAVSWNIAIGACIQSGDILGS 197

Query: 404 IRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQ 455
           ++LF +    S   D  +   I++    SG   + L++   M    G++ N 
Sbjct: 198 MQLFDE----SPLRDTTSWNTIISGLMRSGHAADALSHLRRMAQ-AGVVFNH 244



 Score = 68.6 bits (166), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 68/300 (22%), Positives = 122/300 (40%), Gaps = 53/300 (17%)

Query: 28  ISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPT 87
           +  G+  EA+     + + G+     TL  +   CA    ++ G++VH  ++    K   
Sbjct: 324 VQNGREEEALDLFRRMLREGVAADRFTLTSVAAACANVGMVEQGRQVHGCVEKLWYKLDA 383

Query: 88  TFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAE 147
             L++ ++ MY KCG+  DAR +FD+   KN+  + +ML  YA+ G  + A  LF+ M  
Sbjct: 384 P-LASAIVDMYAKCGNLEDARSIFDRACTKNIAVWTSMLCSYASHGQGRIAIELFERMTA 442

Query: 148 RDVVSWNTMIIGYAKS----GAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKL 203
             +      ++G   +    G V EG  ++K ++                     EE   
Sbjct: 443 EKMTPNEITLVGVLSACSHVGLVSEGELYFKQMQ---------------------EEY-- 479

Query: 204 TRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDA-RDVLTWTTMVSG-- 260
                      G + ++   + IVD Y + G L  A+   +E +   + + W T++S   
Sbjct: 480 -----------GIVPSIEHYNCIVDLYGRSGLLDKAKNFIEENNINHEAIVWKTLLSACR 528

Query: 261 ------YAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIR 314
                 YAKL     AS+   ++ + +  S+  L   Y  N       EL   M   ++R
Sbjct: 529 LHQHNEYAKL-----ASEKLVQLEQCDAGSYVMLSNIYATNNKWHDTFELRVSMQERKVR 583


>gi|110738388|dbj|BAF01120.1| hypothetical protein [Arabidopsis thaliana]
          Length = 596

 Score =  303 bits (775), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 156/477 (32%), Positives = 254/477 (53%), Gaps = 34/477 (7%)

Query: 120 FSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRF 179
           F  N+++SGY++ G+   A  LFD   ++DVV+W  MI G+ ++G+  E + ++  +++ 
Sbjct: 139 FVRNSLISGYSSSGLFDFASRLFDGAEDKDVVTWTAMIDGFVRNGSASEAMVYFVEMKKT 198

Query: 180 SISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLS-NVVISSSIVDAYAKCGELSD 238
            ++ NE +   +L    K+E+++  R VHG  L TG +  +V I SS+VD Y KC    D
Sbjct: 199 GVAANEMTVVSVLKAAGKVEDVRFGRSVHGLYLETGRVKCDVFIGSSLVDMYGKCSCYDD 258

Query: 239 ARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLG 298
                                          A K+F+EMP +N V+WT LIAGY ++   
Sbjct: 259 -------------------------------AQKVFDEMPSRNVVTWTALIAGYVQSRCF 287

Query: 299 QKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSL 358
            K + +F  M+   + PN+ T SS L ACA + +L  G++VH ++I+ +   NT   ++L
Sbjct: 288 DKGMLVFEEMLKSDVAPNEKTLSSVLSACAHVGALHRGRRVHCYMIKNSIEINTTAGTTL 347

Query: 359 IDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPD 418
           ID+Y KCGCL +   VF+    K N   W  MI+    HGY   A  LF+ M+ S V P+
Sbjct: 348 IDLYVKCGCLEEAILVFERLHEK-NVYTWTAMINGFAAHGYARDAFDLFYTMLSSHVSPN 406

Query: 419 KITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQL 478
           ++T   +L+AC H GLV+EG   F SM     +    +H+AC+++L  + G  ++    +
Sbjct: 407 EVTFMAVLSACAHGGLVEEGRRLFLSMKGRFNMELKADHYACMVDLFGRKGLLEEAKALI 466

Query: 479 EKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGR 538
           E+MP E  + +W AL G C +H + ++G+    ++I   P  S  + LL+++YS      
Sbjct: 467 ERMPMEPTNVVWGALFGSCLLHKDYELGKYAASRVIKLQPSHSGRYTLLANLYSESQNWD 526

Query: 539 LVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMR-DVLYSVLEQLAGQM 594
            V +VR+ + ++Q  K    SWIE++ K+  F   D   P+  D LY  L+ +  QM
Sbjct: 527 EVARVRKQMKDQQVVKSPGFSWIEVKGKLCEFIAFDDKKPLESDDLYKTLDTVGVQM 583



 Score =  146 bits (369), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 105/417 (25%), Positives = 188/417 (45%), Gaps = 42/417 (10%)

Query: 135 MKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKF--YKVLRRFSISCNEFSFAGIL 192
            ++AR L   +    +  W+++I  ++    +   L F  Y+ +RR  +  +  +F  +L
Sbjct: 52  FRYARRLLCQLQTLSIQLWDSLIGHFSGGITLNRRLSFLAYRHMRRNGVIPSRHTFPPLL 111

Query: 193 TICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVL 252
               KL +     Q H  ++  G  S+  + +S                           
Sbjct: 112 KAVFKLRDSN-PFQFHAHIVKFGLDSDPFVRNS--------------------------- 143

Query: 253 TWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILR 312
               ++SGY+  G  + AS+LF+   +K+ V+WT +I G+ RNG   +A+  F  M    
Sbjct: 144 ----LISGYSSSGLFDFASRLFDGAEDKDVVTWTAMIDGFVRNGSASEAMVYFVEMKKTG 199

Query: 313 IRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTN-FRSNTIVMSSLIDMYSKCGCLNDG 371
           +  N+ T  S L A   +  ++ G+ VHG  + T   + +  + SSL+DMY KC C +D 
Sbjct: 200 VAANEMTVVSVLKAAGKVEDVRFGRSVHGLYLETGRVKCDVFIGSSLVDMYGKCSCYDDA 259

Query: 372 RQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTH 431
           ++VFD   ++ N + W  +I+   Q    ++ + +F +M++S V P++ TL+ +L+AC H
Sbjct: 260 QKVFDEMPSR-NVVTWTALIAGYVQSRCFDKGMLVFEEMLKSDVAPNEKTLSSVLSACAH 318

Query: 432 SGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWN 491
            G +  G      M  +  I  N      LI+L  + GC ++ +   E++ +E + Y W 
Sbjct: 319 VGALHRGRRVHCYMIKN-SIEINTTAGTTLIDLYVKCGCLEEAILVFERL-HEKNVYTWT 376

Query: 492 ALHGVCRIHGNIDMGRKVVDQLIDQ-NPQSSATHGLLSSIYSALGKGRLVEKVRQLI 547
           A+      HG     R   D      +   S       ++ SA   G LVE+ R+L 
Sbjct: 377 AMINGFAAHG---YARDAFDLFYTMLSSHVSPNEVTFMAVLSACAHGGLVEEGRRLF 430



 Score =  119 bits (298), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 85/375 (22%), Positives = 164/375 (43%), Gaps = 69/375 (18%)

Query: 27  LISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVH-LHLKLTQRKT 85
            +  G  SEA+     + + G+     T+  +L+   + + ++ G+ VH L+L+ T R  
Sbjct: 179 FVRNGSASEAMVYFVEMKKTGVAANEMTVVSVLKAAGKVEDVRFGRSVHGLYLE-TGRVK 237

Query: 86  PTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNM 145
              F+ + L+ MY KC    DA+KVF                               D M
Sbjct: 238 CDVFIGSSLVDMYGKCSCYDDAQKVF-------------------------------DEM 266

Query: 146 AERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTR 205
             R+VV+W  +I GY +S   ++G+  ++ + +  ++ NE + + +L+ C  +  L   R
Sbjct: 267 PSRNVVTWTALIAGYVQSRCFDKGMLVFEEMLKSDVAPNEKTLSSVLSACAHVGALHRGR 326

Query: 206 QVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLG 265
           +VH  ++      N    ++++D Y KCG L +A  +F+    ++V TWT M++G+A   
Sbjct: 327 RVHCYMIKNSIEINTTAGTTLIDLYVKCGCLEEAILVFERLHEKNVYTWTAMINGFAA-- 384

Query: 266 DMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLC 325
                                    GY R+     A +LF  M+   + PN+ TF + L 
Sbjct: 385 ------------------------HGYARD-----AFDLFYTMLSSHVSPNEVTFMAVLS 415

Query: 326 ACASIVSLKHGKQVHGFLI---RTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKE 382
           ACA    ++ G+++  FL    R N        + ++D++ + G L + + + +    + 
Sbjct: 416 ACAHGGLVEEGRRL--FLSMKGRFNMELKADHYACMVDLFGRKGLLEEAKALIERMPMEP 473

Query: 383 NSMLWNTMISALTQH 397
            +++W  +  +   H
Sbjct: 474 TNVVWGALFGSCLLH 488


>gi|15223594|ref|NP_176062.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75173061|sp|Q9FXB9.1|PPR84_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g56690, mitochondrial; Flags: Precursor
 gi|9954744|gb|AAG09095.1|AC009323_6 Hypothetical protein [Arabidopsis thaliana]
 gi|332195302|gb|AEE33423.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 704

 Score =  303 bits (775), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 177/575 (30%), Positives = 291/575 (50%), Gaps = 74/575 (12%)

Query: 92  NHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVV 151
           N ++S YF  G   +AR++FD++  +N+ S+N ++SGY    M+  ARN+F+ M ER+VV
Sbjct: 52  NSIVSGYFSNGLPKEARQLFDEMSERNVVSWNGLVSGYIKNRMIVEARNVFELMPERNVV 111

Query: 152 SWNTMIIGYAKSGAVEEGLK-FYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQ 210
           SW  M+ GY + G V E    F+++  R     NE S+  +    +    +   R+++  
Sbjct: 112 SWTAMVKGYMQEGMVGEAESLFWRMPER-----NEVSWTVMFGGLIDDGRIDKARKLYDM 166

Query: 211 VLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLT----------------- 253
           + V     +VV S++++    + G + +AR +FDE   R+V+T                 
Sbjct: 167 MPV----KDVVASTNMIGGLCREGRVDEARLIFDEMRERNVVTWTTMITGYRQNNRVDVA 222

Query: 254 --------------WTTMVSGYAKLGDMESASKLFNEMP--------------------- 278
                         WT+M+ GY   G +E A + F  MP                     
Sbjct: 223 RKLFEVMPEKTEVSWTSMLLGYTLSGRIEDAEEFFEVMPMKPVIACNAMIVGFGEVGEIS 282

Query: 279 ----------EKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACA 328
                     +++  +W  +I  Y R G   +AL+LF +M    +RP+  +  S L  CA
Sbjct: 283 KARRVFDLMEDRDNATWRGMIKAYERKGFELEALDLFAQMQKQGVRPSFPSLISILSVCA 342

Query: 329 SIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWN 388
           ++ SL++G+QVH  L+R  F  +  V S L+ MY KCG L   + VFD   +K + ++WN
Sbjct: 343 TLASLQYGRQVHAHLVRCQFDDDVYVASVLMTMYVKCGELVKAKLVFDRFSSK-DIIMWN 401

Query: 389 TMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHD 448
           ++IS    HG  E+A+++FH+M  S   P+K+TL  IL AC+++G ++EGL  FESM   
Sbjct: 402 SIISGYASHGLGEEALKIFHEMPSSGTMPNKVTLIAILTACSYAGKLEEGLEIFESMESK 461

Query: 449 LGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRK 508
             + P  EH++C +++L +AG  D+ M  +E M  + D+ +W AL G C+ H  +D+   
Sbjct: 462 FCVTPTVEHYSCTVDMLGRAGQVDKAMELIESMTIKPDATVWGALLGACKTHSRLDLAEV 521

Query: 509 VVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVH 568
              +L +  P ++ T+ LLSSI ++  K   V  VR+ +      K    SWIE+  KVH
Sbjct: 522 AAKKLFENEPDNAGTYVLLSSINASRSKWGDVAVVRKNMRTNNVSKFPGCSWIEVGKKVH 581

Query: 569 AFSVSD-SLHPMRDVLYSVLEQLAGQMGEDAPSLD 602
            F+      HP + ++  +LE+  G + E   S D
Sbjct: 582 MFTRGGIKNHPEQAMILMMLEKTDGLLREAGYSPD 616



 Score =  159 bits (403), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 114/399 (28%), Positives = 195/399 (48%), Gaps = 82/399 (20%)

Query: 72  KRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYAN 131
           KR+ L L+ T   T T    +  IS   + G   +ARK FD +  K + S+N+++SGY +
Sbjct: 2   KRLKLILRRTYL-TSTGVNCSFEISRLSRIGKINEARKFFDSLQFKAIGSWNSIVSGYFS 60

Query: 132 LGMMKHARNLFDNMAERDVVSWNTMIIGYAKS--------------------------GA 165
            G+ K AR LFD M+ER+VVSWN ++ GY K+                          G 
Sbjct: 61  NGLPKEARQLFDEMSERNVVSWNGLVSGYIKNRMIVEARNVFELMPERNVVSWTAMVKGY 120

Query: 166 VEEGLK------FYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSN 219
           ++EG+       F+++  R     NE S+  +    +    +   R+++  + V     +
Sbjct: 121 MQEGMVGEAESLFWRMPER-----NEVSWTVMFGGLIDDGRIDKARKLYDMMPV----KD 171

Query: 220 VVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPE 279
           VV S++++    + G + +AR +FDE   R+V+TWTTM++GY +   ++ A KLF  MPE
Sbjct: 172 VVASTNMIGGLCREGRVDEARLIFDEMRERNVVTWTTMITGYRQNNRVDVARKLFEVMPE 231

Query: 280 KNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQV 339
           K  VSWT+++ GYT +G  + A E F    ++ ++P        + AC            
Sbjct: 232 KTEVSWTSMLLGYTLSGRIEDAEEFFE---VMPMKP--------VIAC------------ 268

Query: 340 HGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGY 399
                           +++I  + + G ++  R+VFDL ++++N+  W  MI A  + G+
Sbjct: 269 ----------------NAMIVGFGEVGEISKARRVFDLMEDRDNAT-WRGMIKAYERKGF 311

Query: 400 DEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEG 438
           + +A+ LF  M +  V+P   +L  IL+ C     +Q G
Sbjct: 312 ELEALDLFAQMQKQGVRPSFPSLISILSVCATLASLQYG 350



 Score = 79.0 bits (193), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 47/145 (32%), Positives = 82/145 (56%), Gaps = 8/145 (5%)

Query: 37  ISSLDLLAQ---RGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNH 93
           + +LDL AQ   +G+R    +L  IL  CA   SL+ G++VH HL   Q      ++++ 
Sbjct: 313 LEALDLFAQMQKQGVRPSFPSLISILSVCATLASLQYGRQVHAHLVRCQFDD-DVYVASV 371

Query: 94  LISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDV--- 150
           L++MY KCG  V A+ VFD+   K++  +N+++SGYA+ G+ + A  +F  M        
Sbjct: 372 LMTMYVKCGELVKAKLVFDRFSSKDIIMWNSIISGYASHGLGEEALKIFHEMPSSGTMPN 431

Query: 151 -VSWNTMIIGYAKSGAVEEGLKFYK 174
            V+   ++   + +G +EEGL+ ++
Sbjct: 432 KVTLIAILTACSYAGKLEEGLEIFE 456


>gi|297740547|emb|CBI30729.3| unnamed protein product [Vitis vinifera]
          Length = 506

 Score =  303 bits (775), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 150/448 (33%), Positives = 257/448 (57%), Gaps = 2/448 (0%)

Query: 135 MKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTI 194
           + +A ++F  +   +   WNT+I  YA S   E  L  +  +   S+  ++++F   L  
Sbjct: 58  IPYAHSIFSRIPNPNSYMWNTIIRAYANSPTPEAALTIFHQMLHASVLPDKYTFTFALKS 117

Query: 195 CVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTW 254
           C     ++  RQ+HG VL TG   ++ I ++++  YA CG + DAR L D    RDV++W
Sbjct: 118 CGSFSGVEEGRQIHGHVLKTGLGDDLFIQNTLIHLYASCGCIEDARHLLDRMLERDVVSW 177

Query: 255 TTMVSGYAKLGDMESASK-LFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRI 313
             ++S YA+ G ME AS+ +F E P KN VSW  +I GY+  G   + L LF  M    +
Sbjct: 178 NALLSAYAERGLMELASRRVFGETPVKNVVSWNAMITGYSHAGRFSEVLVLFEDMQHAGV 237

Query: 314 RPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQ 373
           +P+  T  S L ACA + +L  G+ VH ++ +     +  V ++L+DMYSKCG +    +
Sbjct: 238 KPDNCTLVSVLSACAHVGALSQGEWVHAYIDKNGISIDGFVATALVDMYSKCGSIEKALE 297

Query: 374 VFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSG 433
           VF+    K+ S  WN++IS L+ HG  + A+++F +M+    KP+++T   +L+AC+ +G
Sbjct: 298 VFNSCLRKDIST-WNSIISGLSTHGSGQHALQIFSEMLVEGFKPNEVTFVCVLSACSRAG 356

Query: 434 LVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNAL 493
           L+ EG   F  M H  GI P  EH+ C+++LL + G  ++    ++KMP +  S +W +L
Sbjct: 357 LLDEGREMFNLMVHVHGIQPTIEHYGCMVDLLGRVGLLEEAEELVQKMPQKEASVVWESL 416

Query: 494 HGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFK 553
            G CR HGN+++  +V  +L++ +PQ S++   LS++Y+++G+ + V +VRQ +  +  +
Sbjct: 417 LGACRNHGNVELAERVAQKLLELSPQESSSFVQLSNMYASMGRWKDVMEVRQKMRAQGVR 476

Query: 554 KEQAISWIEIENKVHAFSVSDSLHPMRD 581
           K+   S IE++  V+ F   + L   +D
Sbjct: 477 KDPGCSMIEVDGTVYEFLAGEGLVSGKD 504



 Score =  155 bits (393), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 93/363 (25%), Positives = 174/363 (47%), Gaps = 34/363 (9%)

Query: 54  TLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDK 113
           T  F L+ C     ++ G+++H H+ L        F+ N LI +Y  CG   DAR + D+
Sbjct: 110 TFTFALKSCGSFSGVEEGRQIHGHV-LKTGLGDDLFIQNTLIHLYASCGCIEDARHLLDR 168

Query: 114 IPVKNLFSYNNMLSGYANLGMMKHA-RNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKF 172
           +  +++ S+N +LS YA  G+M+ A R +F     ++VVSWN MI GY+ +G   E L  
Sbjct: 169 MLERDVVSWNALLSAYAERGLMELASRRVFGETPVKNVVSWNAMITGYSHAGRFSEVLVL 228

Query: 173 YKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAK 232
           ++ ++   +  +  +   +L+ C  +  L     VH  +   G   +  +++++VD Y+K
Sbjct: 229 FEDMQHAGVKPDNCTLVSVLSACAHVGALSQGEWVHAYIDKNGISIDGFVATALVDMYSK 288

Query: 233 CGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGY 292
           CG +  A  +F+    +D+ TW +++SG +  G  + A ++F+EM          L+ G+
Sbjct: 289 CGSIEKALEVFNSCLRKDISTWNSIISGLSTHGSGQHALQIFSEM----------LVEGF 338

Query: 293 TRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNT 352
                                +PN+ TF   L AC+    L  G+++   ++  +    T
Sbjct: 339 ---------------------KPNEVTFVCVLSACSRAGLLDEGREMFNLMVHVHGIQPT 377

Query: 353 IV-MSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMV 411
           I     ++D+  + G L +  ++      KE S++W +++ A   HG  E A R+   ++
Sbjct: 378 IEHYGCMVDLLGRVGLLEEAEELVQKMPQKEASVVWESLLGACRNHGNVELAERVAQKLL 437

Query: 412 RSS 414
             S
Sbjct: 438 ELS 440



 Score = 69.3 bits (168), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 65/291 (22%), Positives = 124/291 (42%), Gaps = 37/291 (12%)

Query: 31  GQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFL 90
           G+ SE +   + +   G++    TL  +L  CA   +L  G+ VH ++      +   F+
Sbjct: 220 GRFSEVLVLFEDMQHAGVKPDNCTLVSVLSACAHVGALSQGEWVHAYID-KNGISIDGFV 278

Query: 91  SNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDV 150
           +  L+ MY KCGS   A +VF+    K++ ++N+++SG +  G  +HA  +F  M     
Sbjct: 279 ATALVDMYSKCGSIEKALEVFNSCLRKDISTWNSIISGLSTHGSGQHALQIFSEM----- 333

Query: 151 VSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHG- 209
                          + EG K            NE +F  +L+ C +   L   R++   
Sbjct: 334 ---------------LVEGFK-----------PNEVTFVCVLSACSRAGLLDEGREMFNL 367

Query: 210 QVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDV-LTWTTMVSGYAKLGDME 268
            V V G    +     +VD   + G L +A  L  +   ++  + W +++      G++E
Sbjct: 368 MVHVHGIQPTIEHYGCMVDLLGRVGLLEEAEELVQKMPQKEASVVWESLLGACRNHGNVE 427

Query: 269 SASKLFNEMPEKNP---VSWTTLIAGYTRNGLGQKALELFTRMMILRIRPN 316
            A ++  ++ E +P    S+  L   Y   G  +  +E+  +M    +R +
Sbjct: 428 LAERVAQKLLELSPQESSSFVQLSNMYASMGRWKDVMEVRQKMRAQGVRKD 478


>gi|15228653|ref|NP_189568.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75273910|sp|Q9LS72.1|PP261_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g29230
 gi|9293916|dbj|BAB01819.1| unnamed protein product [Arabidopsis thaliana]
 gi|332644032|gb|AEE77553.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 600

 Score =  303 bits (775), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 181/592 (30%), Positives = 297/592 (50%), Gaps = 75/592 (12%)

Query: 3   SNFSPRGINRKNLPNNCLIQSFLSLISK-GQLSEAISSLDLLAQRGIRLPAETLAFILQQ 61
           +N + R  N+   PN  L  S +   ++  Q  +A      + + G+     T  F+L+ 
Sbjct: 67  TNLAVRVFNQVQEPNVHLCNSLIRAHAQNSQPYQAFFVFSEMQRFGLFADNFTYPFLLKA 126

Query: 62  CAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFS 121
           C+    L + K +H H++     +   ++ N LI  Y +CG                   
Sbjct: 127 CSGQSWLPVVKMMHNHIEKLGLSS-DIYVPNALIDCYSRCGG------------------ 167

Query: 122 YNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFY-KVLRRFS 180
                     LG+ + A  LF+ M+ERD VSWN+M+ G  K+G + +  + + ++ +R  
Sbjct: 168 ----------LGV-RDAMKLFEKMSERDTVSWNSMLGGLVKAGELRDARRLFDEMPQRDL 216

Query: 181 ISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDAR 240
           IS N                                        +++D YA+C E+S A 
Sbjct: 217 ISWN----------------------------------------TMLDGYARCREMSKAF 236

Query: 241 RLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMP--EKNPVSWTTLIAGYTRNGLG 298
            LF++   R+ ++W+TMV GY+K GDME A  +F++MP   KN V+WT +IAGY   GL 
Sbjct: 237 ELFEKMPERNTVSWSTMVMGYSKAGDMEMARVMFDKMPLPAKNVVTWTIIIAGYAEKGLL 296

Query: 299 QKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSL 358
           ++A  L  +M+   ++ +     S L AC     L  G ++H  L R+N  SN  V+++L
Sbjct: 297 KEADRLVDQMVASGLKFDAAAVISILAACTESGLLSLGMRIHSILKRSNLGSNAYVLNAL 356

Query: 359 IDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPD 418
           +DMY+KCG L     VF+    K++ + WNTM+  L  HG+ ++AI LF  M R  ++PD
Sbjct: 357 LDMYAKCGNLKKAFDVFNDIP-KKDLVSWNTMLHGLGVHGHGKEAIELFSRMRREGIRPD 415

Query: 419 KITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQL 478
           K+T   +L +C H+GL+ EG+ YF SM     ++P  EH+ CL++LL + G   + +  +
Sbjct: 416 KVTFIAVLCSCNHAGLIDEGIDYFYSMEKVYDLVPQVEHYGCLVDLLGRVGRLKEAIKVV 475

Query: 479 EKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGR 538
           + MP E +  +W AL G CR+H  +D+ ++V+D L+  +P     + LLS+IY+A     
Sbjct: 476 QTMPMEPNVVIWGALLGACRMHNEVDIAKEVLDNLVKLDPCDPGNYSLLSNIYAAAEDWE 535

Query: 539 LVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQL 590
            V  +R  +     +K    S +E+E+ +H F+V D  HP  D +Y +L  L
Sbjct: 536 GVADIRSKMKSMGVEKPSGASSVELEDGIHEFTVFDKSHPKSDQIYQMLGSL 587



 Score = 68.6 bits (166), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 64/290 (22%), Positives = 125/290 (43%), Gaps = 17/290 (5%)

Query: 232 KCGELSDARRLFDETDAR----DVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTT 287
           KC  L+  ++L  +   R    D+     ++S  +       A ++FN++ E N     +
Sbjct: 28  KCANLNQVKQLHAQIIRRNLHEDLHIAPKLISALSLCRQTNLAVRVFNQVQEPNVHLCNS 87

Query: 288 LIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTN 347
           LI  + +N    +A  +F+ M    +  +  T+   L AC+    L   K +H  + +  
Sbjct: 88  LIRAHAQNSQPYQAFFVFSEMQRFGLFADNFTYPFLLKACSGQSWLPVVKMMHNHIEKLG 147

Query: 348 FRSNTIVMSSLIDMYSKCGCLN--DGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIR 405
             S+  V ++LID YS+CG L   D  ++F+    ++ ++ WN+M+  L + G    A R
Sbjct: 148 LSSDIYVPNALIDCYSRCGGLGVRDAMKLFEKMSERD-TVSWNSMLGGLVKAGELRDARR 206

Query: 406 LFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELL 465
           LF +M +     D I+   +L+       + +    FE M        N    + ++   
Sbjct: 207 LFDEMPQR----DLISWNTMLDGYARCREMSKAFELFEKMPER-----NTVSWSTMVMGY 257

Query: 466 AQAGCSDQLMNQLEKMPYEHDSYL-WNALHGVCRIHGNIDMGRKVVDQLI 514
           ++AG  +      +KMP    + + W  +       G +    ++VDQ++
Sbjct: 258 SKAGDMEMARVMFDKMPLPAKNVVTWTIIIAGYAEKGLLKEADRLVDQMV 307


>gi|357123666|ref|XP_003563529.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Brachypodium distachyon]
          Length = 742

 Score =  303 bits (775), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 167/550 (30%), Positives = 292/550 (53%), Gaps = 3/550 (0%)

Query: 47  GIRLPAETLAFILQQCAESKS-LKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDV 105
           G+   A T  F+ + CA  ++ + L + +H     T   +    +SN +I MY + G   
Sbjct: 98  GVCTDAFTFHFLFKCCARGRAHVLLCQMLHAACFRTMLPSAVPLVSNPIIHMYVELGLAG 157

Query: 106 DARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGA 165
           DAR+ FD IPVK+  ++  ++SG A LG++  A  L  +   R+V+SW  +I GY+++G 
Sbjct: 158 DARRAFDDIPVKDAVAWTTVISGLAKLGLLDDAWCLLRHSPARNVISWTGLISGYSRAGR 217

Query: 166 VEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSS 225
             E +  +  +    I  +E +  G+L+ C +L++L   R +H  V   G L +  +  +
Sbjct: 218 AAEAVDCFNSMLSDGIEPDEVTVIGLLSACAQLKDLVFGRSLHKLVGEKGMLMSGKLVVA 277

Query: 226 IVDAYAKCGELSDARRLFDETD-ARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVS 284
           ++D YAKCG++  A  +FD     R   +W  M+ GY KLG ++ A  LF++M +++ V+
Sbjct: 278 LIDMYAKCGDIGRAWEVFDALGRGRRPQSWNAMIDGYCKLGHVDVARYLFDQMEDRDLVT 337

Query: 285 WTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLI 344
           + +LI GY   G  ++AL LF +M    +R +  T  S L ACAS+ +L  G+ +H  + 
Sbjct: 338 FNSLITGYIHGGRLREALLLFMQMRRHDLRADNFTMVSLLTACASLGALPQGRALHACIE 397

Query: 345 RTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAI 404
           +     +  + ++L+DMY KCG + +   VF     ++    W+ MI+ L  +G  + A+
Sbjct: 398 QRLVEVDIYLGTALLDMYLKCGRVEEASLVFQAMSVRDVHT-WSAMIAGLAFNGMGKAAL 456

Query: 405 RLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIEL 464
             F  M     +P+ +T   IL AC+HS L+ EG  YFE M     I P  EH+ C+I+L
Sbjct: 457 EYFFWMKVDGFQPNSVTYIAILTACSHSCLLDEGRLYFEEMRLLHNIRPLIEHYGCMIDL 516

Query: 465 LAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATH 524
           L ++G  D+ M+ +  MP + ++ +W ++   CR+H + ++ R   + L+   P   A +
Sbjct: 517 LGRSGLLDEAMDLVRTMPMQPNAVIWASILSACRVHKDANLARNAAEHLLKLEPDEDAVY 576

Query: 525 GLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLY 584
             L +IY    +     ++R+L+ ER  KK    S I +  +VH F V D  HP    + 
Sbjct: 577 VQLYNIYIDSRQWEDASQIRRLMEERGVKKAAGYSSITVAGQVHKFIVCDRTHPQIMEIT 636

Query: 585 SVLEQLAGQM 594
           +++E++  ++
Sbjct: 637 AMMEEITRRL 646



 Score =  156 bits (394), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 96/318 (30%), Positives = 153/318 (48%), Gaps = 7/318 (2%)

Query: 135 MKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTI 194
           +++A  LFD M     +    +   +  S   E  L  Y+ +RR  +  + F+F  +   
Sbjct: 53  LRYALCLFDRMPCSTFLFDTALRACFRASSGPESPLILYRRMRRTGVCTDAFTFHFLFKC 112

Query: 195 CVK-LEELKLTRQVHGQVLVTGFLSNV-VISSSIVDAYAKCGELSDARRLFDETDARDVL 252
           C +    + L + +H     T   S V ++S+ I+  Y + G   DARR FD+   +D +
Sbjct: 113 CARGRAHVLLCQMLHAACFRTMLPSAVPLVSNPIIHMYVELGLAGDARRAFDDIPVKDAV 172

Query: 253 TWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILR 312
            WTT++SG AKLG ++ A  L    P +N +SWT LI+GY+R G   +A++ F  M+   
Sbjct: 173 AWTTVISGLAKLGLLDDAWCLLRHSPARNVISWTGLISGYSRAGRAAEAVDCFNSMLSDG 232

Query: 313 IRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGR 372
           I P++ T    L ACA +  L  G+ +H  +       +  ++ +LIDMY+KCG +    
Sbjct: 233 IEPDEVTVIGLLSACAQLKDLVFGRSLHKLVGEKGMLMSGKLVVALIDMYAKCGDIGRAW 292

Query: 373 QVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHS 432
           +VFD          WN MI    + G+ + A  LF  M       D +T   ++    H 
Sbjct: 293 EVFDALGRGRRPQSWNAMIDGYCKLGHVDVARYLFDQMEDR----DLVTFNSLITGYIHG 348

Query: 433 GLVQEGLTYFESM-THDL 449
           G ++E L  F  M  HDL
Sbjct: 349 GRLREALLLFMQMRRHDL 366



 Score =  152 bits (384), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 108/385 (28%), Positives = 175/385 (45%), Gaps = 42/385 (10%)

Query: 21  IQSFLSLIS----KGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHL 76
           + S+  LIS     G+ +EA+   + +   GI     T+  +L  CA+ K L  G+ +H 
Sbjct: 202 VISWTGLISGYSRAGRAAEAVDCFNSMLSDGIEPDEVTVIGLLSACAQLKDLVFGRSLH- 260

Query: 77  HLKLTQRK--TPTTFLSNHLISMYFKCGSDVDARKVFDKIPV-KNLFSYNNMLSGYANLG 133
             KL   K    +  L   LI MY KCG    A +VFD +   +   S+N M+ GY  LG
Sbjct: 261 --KLVGEKGMLMSGKLVVALIDMYAKCGDIGRAWEVFDALGRGRRPQSWNAMIDGYCKLG 318

Query: 134 MMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILT 193
            +  AR LFD M +RD+V++N++I GY   G + E L  +  +RR  +  + F+   +LT
Sbjct: 319 HVDVARYLFDQMEDRDLVTFNSLITGYIHGGRLREALLLFMQMRRHDLRADNFTMVSLLT 378

Query: 194 ICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLT 253
            C  L  L   R +H  +       ++ + ++++D Y KCG + +A  +F     RDV T
Sbjct: 379 ACASLGALPQGRALHACIEQRLVEVDIYLGTALLDMYLKCGRVEEASLVFQAMSVRDVHT 438

Query: 254 WTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRI 313
           W+ M                               IAG   NG+G+ ALE F  M +   
Sbjct: 439 WSAM-------------------------------IAGLAFNGMGKAALEYFFWMKVDGF 467

Query: 314 RPNQHTFSSCLCACASIVSLKHGK-QVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGR 372
           +PN  T+ + L AC+    L  G+       +  N R        +ID+  + G L++  
Sbjct: 468 QPNSVTYIAILTACSHSCLLDEGRLYFEEMRLLHNIRPLIEHYGCMIDLLGRSGLLDEAM 527

Query: 373 QVFDLTDNKENSMLWNTMISALTQH 397
            +      + N+++W +++SA   H
Sbjct: 528 DLVRTMPMQPNAVIWASILSACRVH 552



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 45/172 (26%), Positives = 83/172 (48%), Gaps = 10/172 (5%)

Query: 11  NRKNLPNNCLIQSFLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKL 70
           +R  +  N LI  +   I  G+L EA+     + +  +R    T+  +L  CA   +L  
Sbjct: 332 DRDLVTFNSLITGY---IHGGRLREALLLFMQMRRHDLRADNFTMVSLLTACASLGALPQ 388

Query: 71  GKRVHLHLKLTQRKTPT-TFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGY 129
           G+   LH  + QR      +L   L+ MY KCG   +A  VF  + V+++ +++ M++G 
Sbjct: 389 GRA--LHACIEQRLVEVDIYLGTALLDMYLKCGRVEEASLVFQAMSVRDVHTWSAMIAGL 446

Query: 130 ANLGMMKHARNLFDNMA----ERDVVSWNTMIIGYAKSGAVEEGLKFYKVLR 177
           A  GM K A   F  M     + + V++  ++   + S  ++EG  +++ +R
Sbjct: 447 AFNGMGKAALEYFFWMKVDGFQPNSVTYIAILTACSHSCLLDEGRLYFEEMR 498


>gi|356506884|ref|XP_003522204.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g47840-like [Glycine max]
          Length = 752

 Score =  302 bits (774), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 169/571 (29%), Positives = 287/571 (50%), Gaps = 66/571 (11%)

Query: 27  LISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTP 86
           L+  G   EA+     +    +   + T A  L+  A+S  L  GK +H    + Q    
Sbjct: 233 LVHAGYNMEALLYFSEMWISKVGYDSHTFAIALKASADSSLLHHGKAIHTQ-TIKQGFDE 291

Query: 87  TTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMA 146
           ++F+ N L +MY KCG                                  +   LF+ M 
Sbjct: 292 SSFVINTLATMYNKCGK-------------------------------ADYVMRLFEKMK 320

Query: 147 ERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQ 206
             DVVSW T+I  Y + G  E  ++ +K +R+ ++S N+++FA +++ C  L   K   Q
Sbjct: 321 MPDVVSWTTLITTYVQKGEEEHAVEAFKRMRKSNVSPNKYTFAAVISACANLAIAKWGEQ 380

Query: 207 VHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGD 266
           +HG VL  G +  + +++SIV  Y+K G L  A  +F     +D+++W+T          
Sbjct: 381 IHGHVLRLGLVDALSVANSIVTLYSKSGLLKSASLVFHGITRKDIISWST---------- 430

Query: 267 MESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCA 326
                                +IA Y++ G  ++A +  + M     +PN+   SS L  
Sbjct: 431 ---------------------IIAVYSQGGYAKEAFDYLSWMRREGPKPNEFALSSVLSV 469

Query: 327 CASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSML 386
           C S+  L+ GKQVH  ++        +V S+LI MYSKCG + +  ++F+    K N+++
Sbjct: 470 CGSMALLEQGKQVHAHVLCIGIDHEAMVHSALISMYSKCGSVEEASKIFN--GMKINNII 527

Query: 387 -WNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESM 445
            W  MI+   +HGY ++AI LF  +    +KPD +T   +L AC+H+G+V  G  YF  M
Sbjct: 528 SWTAMINGYAEHGYSQEAINLFEKISSVGLKPDYVTFIGVLTACSHAGMVDLGFYYFMLM 587

Query: 446 THDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDM 505
           T++  I P++EH+ C+I+LL +AG   +  + +  MP   D  +W+ L   CR+HG++D 
Sbjct: 588 TNEYQISPSKEHYGCIIDLLCRAGRLSEAEHMIRSMPCYTDDVVWSTLLRSCRVHGDVDR 647

Query: 506 GRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIEN 565
           GR   +QL+  +P S+ TH  L++IY+A G+ +    +R+L+  +   KE+  SW+ + +
Sbjct: 648 GRWTAEQLLRLDPNSAGTHIALANIYAAKGRWKEAAHIRKLMKSKGVIKERGWSWVNVND 707

Query: 566 KVHAFSVSDSLHPMRDVLYSVLEQLAGQMGE 596
           K++AF   D  HP  + + +VLE L+  +G+
Sbjct: 708 KLNAFVAGDQAHPQSEHITTVLELLSANIGD 738



 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 107/410 (26%), Positives = 191/410 (46%), Gaps = 52/410 (12%)

Query: 42  LLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLIS--MYF 99
           L++ R +  P+    ++ +  A S +L L     LH       + T   S +L S   Y 
Sbjct: 8   LISPRILFKPSPQRFWLHRSYASSPALALHPPSSLH-------SMTAVFSRNLDSPLTYS 60

Query: 100 KCGSDVDARKVFDKIP----VKNLFSYNNMLSGYANL------GMMKHARNLFDNMAERD 149
             G+  + R++  +       +N +S +NML   + L      G +  +R +FD M  RD
Sbjct: 61  SPGTATECRELIQQAKQEQLAQNAYSVHNMLELNSELKQLVKQGQLCKSRYMFDKMTHRD 120

Query: 150 VVSWNTMIIGYAK-SGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVH 208
            +SW T+I GY   S + E  + F  +  +  +  ++F  +  L  C     +     +H
Sbjct: 121 EISWTTLIAGYVNASDSYEALILFSNMWVQPGLQRDQFMISVALKACGLGVNICFGELLH 180

Query: 209 GQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDME 268
           G  + +G +++V +SS+++D Y K G++                               E
Sbjct: 181 GFSVKSGLINSVFVSSALIDMYMKVGKI-------------------------------E 209

Query: 269 SASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACA 328
              ++F +M ++N VSWT +IAG    G   +AL  F+ M I ++  + HTF+  L A A
Sbjct: 210 QGCRVFKKMTKRNVVSWTAIIAGLVHAGYNMEALLYFSEMWISKVGYDSHTFAIALKASA 269

Query: 329 SIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWN 388
               L HGK +H   I+  F  ++ V+++L  MY+KCG  +   ++F+      + + W 
Sbjct: 270 DSSLLHHGKAIHTQTIKQGFDESSFVINTLATMYNKCGKADYVMRLFEKM-KMPDVVSWT 328

Query: 389 TMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEG 438
           T+I+   Q G +E A+  F  M +S+V P+K T A +++AC +  + + G
Sbjct: 329 TLITTYVQKGEEEHAVEAFKRMRKSNVSPNKYTFAAVISACANLAIAKWG 378



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 69/287 (24%), Positives = 126/287 (43%), Gaps = 42/287 (14%)

Query: 9   GINRKNLPNNCLIQSFLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSL 68
           GI RK++ +   I +  S    G   EA   L  + + G +     L+ +L  C     L
Sbjct: 419 GITRKDIISWSTIIAVYS--QGGYAKEAFDYLSWMRREGPKPNEFALSSVLSVCGSMALL 476

Query: 69  KLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSG 128
           + GK+VH H+ L         + + LISMY KCGS  +A K+F+ + + N+ S+  M++G
Sbjct: 477 EQGKQVHAHV-LCIGIDHEAMVHSALISMYSKCGSVEEASKIFNGMKINNIISWTAMING 535

Query: 129 YANLGMMKHARNLFDNMA----ERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCN 184
           YA  G  + A NLF+ ++    + D V++  ++   + +G V+ G  +      F +  N
Sbjct: 536 YAEHGYSQEAINLFEKISSVGLKPDYVTFIGVLTACSHAGMVDLGFYY------FMLMTN 589

Query: 185 EFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFD 244
           E+             ++  +++ +G                I+D   + G LS+A  +  
Sbjct: 590 EY-------------QISPSKEHYG---------------CIIDLLCRAGRLSEAEHMIR 621

Query: 245 ETDA-RDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIA 290
                 D + W+T++      GD++       ++   +P S  T IA
Sbjct: 622 SMPCYTDDVVWSTLLRSCRVHGDVDRGRWTAEQLLRLDPNSAGTHIA 668


>gi|356570253|ref|XP_003553304.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g01510-like [Glycine max]
          Length = 815

 Score =  302 bits (774), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 167/489 (34%), Positives = 270/489 (55%), Gaps = 33/489 (6%)

Query: 116 VKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKV 175
           V N+F  N +L  Y+    +  AR LF  M E D +S+N +I   A +G VEE L+ ++ 
Sbjct: 272 VWNVFVANALLDFYSKHDRIVEARKLFYEMPEVDGISYNVLITCCAWNGRVEESLELFRE 331

Query: 176 LRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGE 235
           L+       +F FA +L+I      L++ RQ+H Q +VT  +S V++ +S+VD Y     
Sbjct: 332 LQFTRFDRRQFPFATLLSIAANSLNLEMGRQIHSQAIVTDAISEVLVGNSLVDMY----- 386

Query: 236 LSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRN 295
                                     AK      A+++F ++  ++ V WT LI+GY + 
Sbjct: 387 --------------------------AKCDKFGEANRIFADLAHQSSVPWTALISGYVQK 420

Query: 296 GLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVM 355
           GL +  L+LF  M   +I  +  T++S L ACA++ SL  GKQ+H  +IR+   SN    
Sbjct: 421 GLHEDGLKLFVEMHRAKIGADSATYASILRACANLASLTLGKQLHSRIIRSGCLSNVFSG 480

Query: 356 SSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSV 415
           S+L+DMY+KCG + +  Q+F     + NS+ WN +ISA  Q+G    A+R F  M+ S +
Sbjct: 481 SALVDMYAKCGSIKEALQMFQEMPVR-NSVSWNALISAYAQNGDGGHALRSFEQMIHSGL 539

Query: 416 KPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLM 475
           +P+ ++   IL AC+H GLV+EGL YF SMT    + P +EH+A ++++L ++G  D+  
Sbjct: 540 QPNSVSFLSILCACSHCGLVEEGLQYFNSMTQVYKLEPRREHYASMVDMLCRSGRFDEAE 599

Query: 476 NQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLID-QNPQSSATHGLLSSIYSAL 534
             + +MP+E D  +W+++   CRIH N ++  K  DQL + +  + +A +  +S+IY+A 
Sbjct: 600 KLMARMPFEPDEIMWSSILNSCRIHKNQELAIKAADQLFNMKGLRDAAPYVSMSNIYAAA 659

Query: 535 GKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQM 594
           G+   V KV++ + ER  +K  A SW+EI+ K H FS +D+ HP    +   L++L  QM
Sbjct: 660 GEWDSVGKVKKALRERGIRKVPAYSWVEIKQKTHVFSANDTSHPQTKEITRKLDELEKQM 719

Query: 595 GEDAPSLDA 603
            E     D+
Sbjct: 720 EEQGYKPDS 728



 Score =  157 bits (397), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 100/369 (27%), Positives = 180/369 (48%), Gaps = 35/369 (9%)

Query: 67  SLKLGKRVHLHLKLTQRKT---PTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYN 123
           +L   KR   H+  +  KT   P T   N  +  + + G    ARK+FD++P KN+ S N
Sbjct: 18  TLTSPKRHFQHVDASMIKTGFDPNTCRFNFQVQTHLQRGDLGAARKLFDEMPHKNVISTN 77

Query: 124 NMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISC 183
            M+ GY   G +  AR+LFD+M +R VV+W  +I GYA+     E    +  + R  +  
Sbjct: 78  TMIMGYLKSGNLSTARSLFDSMVQRSVVTWTMLIGGYAQHNRFLEAFNLFADMCRHGMVP 137

Query: 184 NEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLF 243
           +  + A +L+   + E +    QVHG V+  G+ S +++ +S++D+Y K   L  A  LF
Sbjct: 138 DHITLATLLSGFTEFESVNEVAQVHGHVVKVGYDSTLMVCNSLLDSYCKTRSLGLACHLF 197

Query: 244 DETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALE 303
                +D +T+  +++GY+K                                G    A+ 
Sbjct: 198 KHMAEKDNVTFNALLTGYSK-------------------------------EGFNHDAIN 226

Query: 304 LFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYS 363
           LF +M  L  RP++ TF++ L A   +  ++ G+QVH F+++ NF  N  V ++L+D YS
Sbjct: 227 LFFKMQDLGFRPSEFTFAAVLTAGIQMDDIEFGQQVHSFVVKCNFVWNVFVANALLDFYS 286

Query: 364 KCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLA 423
           K   + + R++F     + + + +N +I+    +G  E+++ LF ++  +     +   A
Sbjct: 287 KHDRIVEARKLF-YEMPEVDGISYNVLITCCAWNGRVEESLELFRELQFTRFDRRQFPFA 345

Query: 424 VILNACTHS 432
            +L+   +S
Sbjct: 346 TLLSIAANS 354



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 69/279 (24%), Positives = 137/279 (49%), Gaps = 16/279 (5%)

Query: 11  NRKNLPNNCLIQSFLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKL 70
           ++ ++P   LI  +   + KG   + +     + +  I   + T A IL+ CA   SL L
Sbjct: 404 HQSSVPWTALISGY---VQKGLHEDGLKLFVEMHRAKIGADSATYASILRACANLASLTL 460

Query: 71  GKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYA 130
           GK++H  + +        F  + L+ MY KCGS  +A ++F ++PV+N  S+N ++S YA
Sbjct: 461 GKQLHSRI-IRSGCLSNVFSGSALVDMYAKCGSIKEALQMFQEMPVRNSVSWNALISAYA 519

Query: 131 NLGMMKHARNLFDNMA----ERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRR-FSISCNE 185
             G   HA   F+ M     + + VS+ +++   +  G VEEGL+++  + + + +    
Sbjct: 520 QNGDGGHALRSFEQMIHSGLQPNSVSFLSILCACSHCGLVEEGLQYFNSMTQVYKLEPRR 579

Query: 186 FSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDA--YAKCGELS--DARR 241
             +A ++ +  +        ++  ++    F  + ++ SSI+++    K  EL+   A +
Sbjct: 580 EHYASMVDMLCRSGRFDEAEKLMARM---PFEPDEIMWSSILNSCRIHKNQELAIKAADQ 636

Query: 242 LFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEK 280
           LF+    RD   + +M + YA  G+ +S  K+   + E+
Sbjct: 637 LFNMKGLRDAAPYVSMSNIYAAAGEWDSVGKVKKALRER 675



 Score = 45.4 bits (106), Expect = 0.075,   Method: Compositional matrix adjust.
 Identities = 37/142 (26%), Positives = 56/142 (39%), Gaps = 40/142 (28%)

Query: 334 KHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKE----NSML--- 386
           +H + V   +I+T F  NT   +  +  + + G L   R++FD   +K     N+M+   
Sbjct: 24  RHFQHVDASMIKTGFDPNTCRFNFQVQTHLQRGDLGAARKLFDEMPHKNVISTNTMIMGY 83

Query: 387 -----------------------WNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLA 423
                                  W  +I    QH    +A  LF DM R  + PD ITLA
Sbjct: 84  LKSGNLSTARSLFDSMVQRSVVTWTMLIGGYAQHNRFLEAFNLFADMCRHGMVPDHITLA 143

Query: 424 VILNACTHSGLVQEGLTYFESM 445
            +L+          G T FES+
Sbjct: 144 TLLS----------GFTEFESV 155


>gi|357475445|ref|XP_003608008.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355509063|gb|AES90205.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1183

 Score =  302 bits (774), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 203/703 (28%), Positives = 331/703 (47%), Gaps = 143/703 (20%)

Query: 31   GQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVH-------------LH 77
            G L  AI  L     +   L   +   +LQ CAE KSL+ GKRVH             L 
Sbjct: 350  GDLRNAIELLT--KSKSYELGLNSYCSVLQLCAEKKSLEDGKRVHSVIISNGISIDEALG 407

Query: 78   LKLT-----------QRK------TPTTFLSNHLISMYFKCGSDVDARKVFDKIP----V 116
             KL             RK          FL N L+S Y K G+  ++  +F K+     V
Sbjct: 408  AKLVFMYVNCGDLVQGRKIFDKIMNDKVFLWNLLMSEYAKIGNFRESVSLFKKMQKLGVV 467

Query: 117  KNLFSY-----------------------------------NNMLSGYANLGMMKHARNL 141
             N +++                                   N++++ Y   G ++ A NL
Sbjct: 468  GNCYTFTCVLKCFAALGKVKECKRVHGYVLKLGFGSNTAVVNSLIAAYFKFGGVESAHNL 527

Query: 142  FDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEEL 201
            FD ++E DVVSWN+MI G   +G    GL+ +  +    +  +  +   +L     +  L
Sbjct: 528  FDELSEPDVVSWNSMINGCVVNGFSGNGLEIFIQMLILGVEVDLTTLVSVLVAWANIGNL 587

Query: 202  KLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGEL------------------------- 236
             L R +HG  +   F   VV S++++D Y+KCG L                         
Sbjct: 588  SLGRALHGFGVKACFSEEVVFSNTLLDMYSKCGNLNGATEVFVKMGDTTIVSWTSTIAAY 647

Query: 237  ------SDARRLFDETDAR----DVLTWTTMVSG-------------------------- 260
                  SDA  LFDE  ++    D+ T T++V                            
Sbjct: 648  VREGLYSDAIGLFDEMQSKGVRPDIYTVTSIVHACACSSSLDKGRDVHSYVIKNGMGSNL 707

Query: 261  ---------YAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMIL 311
                     YAK G +E A  +F+++P K+ VSW T+I GY++N L  +ALELF  M   
Sbjct: 708  PVTNALINMYAKCGSVEEARLVFSKIPVKDIVSWNTMIGGYSQNSLPNEALELFLDMQ-K 766

Query: 312  RIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDG 371
            + +P+  T +  L ACA + +L  G+++HG ++R  + S+  V  +L+DMY+KCG L   
Sbjct: 767  QFKPDDITMACVLPACAGLAALDKGREIHGHILRRGYFSDLHVACALVDMYAKCGLLVLA 826

Query: 372  RQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTH 431
            + +FD+   K++ + W  MI+    HG+  +AI  F++M  + ++PD+ + +VILNAC+H
Sbjct: 827  QLLFDMIP-KKDLISWTVMIAGYGMHGFGNEAISTFNEMRIAGIEPDESSFSVILNACSH 885

Query: 432  SGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWN 491
            SGL+ EG  +F SM ++ G+ P  EH+AC+++LLA+ G   +    +E MP + D+ +W 
Sbjct: 886  SGLLNEGWKFFNSMRNECGVEPKLEHYACVVDLLARMGNLSKAYKFIESMPIKPDTTIWG 945

Query: 492  ALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQ 551
             L   CRIH ++ +  KV + + +  P ++  + +L+++Y+   K   V+K+R+ + +R 
Sbjct: 946  VLLSGCRIHHDVKLAEKVAEHIFELEPDNTRYYVVLANVYAEAEKWEEVKKLRKRMQKRG 1005

Query: 552  FKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQM 594
            FK+    SWIE+  K + F   +S HP    +  +L +L  QM
Sbjct: 1006 FKQNPGCSWIEVGGKFNIFVAGNSKHPQAKRIDVLLRKLTMQM 1048



 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 101/402 (25%), Positives = 177/402 (44%), Gaps = 67/402 (16%)

Query: 26  SLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKT 85
           + + +G  S+AI   D +  +G+R    T+  I+  CA S SL  G+ VH ++ +     
Sbjct: 646 AYVREGLYSDAIGLFDEMQSKGVRPDIYTVTSIVHACACSSSLDKGRDVHSYV-IKNGMG 704

Query: 86  PTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNM 145
               ++N LI+MY KCGS  +AR VF KIPVK++ S+N M+ GY+   +   A  LF +M
Sbjct: 705 SNLPVTNALINMYAKCGSVEEARLVFSKIPVKDIVSWNTMIGGYSQNSLPNEALELFLDM 764

Query: 146 AERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTR 205
            ++                                   ++ + A +L  C  L  L   R
Sbjct: 765 QKQ--------------------------------FKPDDITMACVLPACAGLAALDKGR 792

Query: 206 QVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLG 265
           ++HG +L  G+ S++ ++ ++VD YAKCG L  A+ LFD    +D+++WT M++GY    
Sbjct: 793 EIHGHILRRGYFSDLHVACALVDMYAKCGLLVLAQLLFDMIPKKDLISWTVMIAGYG--- 849

Query: 266 DMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLC 325
                                        +G G +A+  F  M I  I P++ +FS  L 
Sbjct: 850 ----------------------------MHGFGNEAISTFNEMRIAGIEPDESSFSVILN 881

Query: 326 ACASIVSLKHG-KQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENS 384
           AC+    L  G K  +               + ++D+ ++ G L+   +  +    K ++
Sbjct: 882 ACSHSGLLNEGWKFFNSMRNECGVEPKLEHYACVVDLLARMGNLSKAYKFIESMPIKPDT 941

Query: 385 MLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVIL 426
            +W  ++S    H   + A ++   +    ++PD     V+L
Sbjct: 942 TIWGVLLSGCRIHHDVKLAEKVAEHIFE--LEPDNTRYYVVL 981



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 97/424 (22%), Positives = 171/424 (40%), Gaps = 75/424 (17%)

Query: 142 FDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEEL 201
           F N       + N  I  + + G +   ++     + + +  N  S+  +L +C + + L
Sbjct: 328 FTNTTHSVTQNQNAKINKFCEMGDLRNAIELLTKSKSYELGLN--SYCSVLQLCAEKKSL 385

Query: 202 KLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGY 261
           +  ++VH  ++  G   +  + + +V  Y  CG+L   R++FD+     V  W  ++S Y
Sbjct: 386 EDGKRVHSVIISNGISIDEALGAKLVFMYVNCGDLVQGRKIFDKIMNDKVFLWNLLMSEY 445

Query: 262 AKLGDMESASKLFNEMPE---------------------------------------KNP 282
           AK+G+   +  LF +M +                                        N 
Sbjct: 446 AKIGNFRESVSLFKKMQKLGVVGNCYTFTCVLKCFAALGKVKECKRVHGYVLKLGFGSNT 505

Query: 283 VSWTTLIAGYTRNGLGQKALELF-------------------------------TRMMIL 311
               +LIA Y + G  + A  LF                                +M+IL
Sbjct: 506 AVVNSLIAAYFKFGGVESAHNLFDELSEPDVVSWNSMINGCVVNGFSGNGLEIFIQMLIL 565

Query: 312 RIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDG 371
            +  +  T  S L A A+I +L  G+ +HGF ++  F    +  ++L+DMYSKCG LN  
Sbjct: 566 GVEVDLTTLVSVLVAWANIGNLSLGRALHGFGVKACFSEEVVFSNTLLDMYSKCGNLNGA 625

Query: 372 RQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTH 431
            +VF +       + W + I+A  + G    AI LF +M    V+PD  T+  I++AC  
Sbjct: 626 TEVF-VKMGDTTIVSWTSTIAAYVREGLYSDAIGLFDEMQSKGVRPDIYTVTSIVHACAC 684

Query: 432 SGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWN 491
           S  + +G      +  + G+  N      LI + A+ G  ++      K+P + D   WN
Sbjct: 685 SSSLDKGRDVHSYVIKN-GMGSNLPVTNALINMYAKCGSVEEARLVFSKIPVK-DIVSWN 742

Query: 492 ALHG 495
            + G
Sbjct: 743 TMIG 746


>gi|334188487|ref|NP_200728.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170817|sp|Q9FIF7.1|PP435_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At5g59200, chloroplastic; Flags: Precursor
 gi|9759241|dbj|BAB09765.1| unnamed protein product [Arabidopsis thaliana]
 gi|332009773|gb|AED97156.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 544

 Score =  302 bits (774), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 169/521 (32%), Positives = 289/521 (55%), Gaps = 25/521 (4%)

Query: 78  LKLTQRKTPTTFLSN-----HLISMYFK---CGSDVDARKVFDKIPVKNLFSYNNMLSGY 129
           L+L++RKT  + L +     H+ S++ K      D DA  VF+ I V             
Sbjct: 24  LRLSRRKTLISVLRSCKNIAHVPSIHAKIIRTFHDQDAFVVFELIRV------------C 71

Query: 130 ANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFA 189
           + L  + +A ++F  ++  +V  +  MI G+  SG   +G+  Y  +   S+  + +   
Sbjct: 72  STLDSVDYAYDVFSYVSNPNVYLYTAMIDGFVSSGRSADGVSLYHRMIHNSVLPDNYVIT 131

Query: 190 GILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDAR 249
            +L  C    +LK+ R++H QVL  GF S+  +   +++ Y K GEL +A+++FDE   R
Sbjct: 132 SVLKAC----DLKVCREIHAQVLKLGFGSSRSVGLKMMEIYGKSGELVNAKKMFDEMPDR 187

Query: 250 DVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMM 309
           D +  T M++ Y++ G ++ A +LF ++  K+ V WT +I G  RN    KALELF  M 
Sbjct: 188 DHVAATVMINCYSECGFIKEALELFQDVKIKDTVCWTAMIDGLVRNKEMNKALELFREMQ 247

Query: 310 ILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLN 369
           +  +  N+ T    L AC+ + +L+ G+ VH F+       +  V ++LI+MYS+CG +N
Sbjct: 248 MENVSANEFTAVCVLSACSDLGALELGRWVHSFVENQRMELSNFVGNALINMYSRCGDIN 307

Query: 370 DGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNAC 429
           + R+VF +  +K+  + +NTMIS L  HG   +AI  F DMV    +P+++TL  +LNAC
Sbjct: 308 EARRVFRVMRDKD-VISYNTMISGLAMHGASVEAINEFRDMVNRGFRPNQVTLVALLNAC 366

Query: 430 THSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYL 489
           +H GL+  GL  F SM     + P  EH+ C+++LL + G  ++    +E +P E D  +
Sbjct: 367 SHGGLLDIGLEVFNSMKRVFNVEPQIEHYGCIVDLLGRVGRLEEAYRFIENIPIEPDHIM 426

Query: 490 WNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINE 549
              L   C+IHGN+++G K+  +L +     S T+ LLS++Y++ GK +   ++R+ + +
Sbjct: 427 LGTLLSACKIHGNMELGEKIAKRLFESENPDSGTYVLLSNLYASSGKWKESTEIRESMRD 486

Query: 550 RQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQL 590
              +KE   S IE++N++H F V D  HP ++ +Y  L++L
Sbjct: 487 SGIEKEPGCSTIEVDNQIHEFLVGDIAHPHKEAIYQRLQEL 527



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 64/275 (23%), Positives = 130/275 (47%), Gaps = 14/275 (5%)

Query: 19  CLIQSFLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHL 78
           C       L+   ++++A+     +    +     T   +L  C++  +L+LG+ VH  +
Sbjct: 222 CWTAMIDGLVRNKEMNKALELFREMQMENVSANEFTAVCVLSACSDLGALELGRWVHSFV 281

Query: 79  KLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHA 138
           +  QR   + F+ N LI+MY +CG   +AR+VF  +  K++ SYN M+SG A  G    A
Sbjct: 282 E-NQRMELSNFVGNALINMYSRCGDINEARRVFRVMRDKDVISYNTMISGLAMHGASVEA 340

Query: 139 RNLFDNMAER----DVVSWNTMIIGYAKSGAVEEGLKFYKVLRR-FSISCNEFSFAGILT 193
            N F +M  R    + V+   ++   +  G ++ GL+ +  ++R F++      +  I+ 
Sbjct: 341 INEFRDMVNRGFRPNQVTLVALLNACSHGGLLDIGLEVFNSMKRVFNVEPQIEHYGCIVD 400

Query: 194 ICVKLEELKLTRQVHGQVLVTG--FLSNVVISSSIVDAYAKCGELSDARRLFDETDARDV 251
           +  ++  L+   +    + +     +   ++S+  +    + GE   A+RLF E++  D 
Sbjct: 401 LLGRVGRLEEAYRFIENIPIEPDHIMLGTLLSACKIHGNMELGE-KIAKRLF-ESENPDS 458

Query: 252 LTWTTMVSGYAKLGDMESASKLFNEMP----EKNP 282
            T+  + + YA  G  + ++++   M     EK P
Sbjct: 459 GTYVLLSNLYASSGKWKESTEIRESMRDSGIEKEP 493


>gi|449479818|ref|XP_004155716.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g08510-like [Cucumis sativus]
          Length = 512

 Score =  302 bits (774), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 151/457 (33%), Positives = 253/457 (55%), Gaps = 1/457 (0%)

Query: 135 MKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTI 194
           + +A  LFD + +  V  +N  I  ++  G        Y  +     S N++SF  +   
Sbjct: 32  LPYACTLFDQIPKPSVYLYNKFIQTFSSIGHPHRCWLLYCQMCSQGCSPNQYSFTFLFPA 91

Query: 195 CVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTW 254
           C  L  +   + +H     +GF S++   ++++D YAK G L  AR+LFDE   RD+ TW
Sbjct: 92  CASLFNVYPGQMLHSHFCKSGFASDMFAMTALLDMYAKLGMLRSARQLFDEMPVRDIPTW 151

Query: 255 TTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILR-I 313
            ++++GYA+ G ME+A +LFN+MP +N +SWT LI+GY +NG   KALE+F  +   +  
Sbjct: 152 NSLIAGYARSGHMEAALELFNKMPVRNVISWTALISGYAQNGKYAKALEMFIGLENEKGT 211

Query: 314 RPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQ 373
           +PN+ + +S L AC+ + +L  GK++  +     F  N  V +++++++++CG + + +Q
Sbjct: 212 KPNEVSIASVLPACSQLGALDIGKRIEAYARNNGFFKNAYVSNAVLELHARCGNIEEAQQ 271

Query: 374 VFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSG 433
           VFD   +K N   WNTMI  L  HG    A++L+  M+   ++PD +T   +L ACTH G
Sbjct: 272 VFDEIGSKRNLCSWNTMIMGLAVHGRCIDALQLYDQMLIRKMRPDDVTFVGLLLACTHGG 331

Query: 434 LVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNAL 493
           +V EG   FESM     + P  EH+ CL++LL +AG   +  N ++ MP   DS +W  L
Sbjct: 332 MVAEGRQLFESMESKFQVAPKLEHYGCLVDLLGRAGELQEAYNLIQNMPMAPDSVIWGTL 391

Query: 494 HGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFK 553
            G C  HGN+++G    + L    P +   + +LS+IY+  G    V ++R+++      
Sbjct: 392 LGACSFHGNVELGEVAAESLFKLEPWNPGNYVILSNIYALAGDWSGVARLRKMMKGGHIT 451

Query: 554 KEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQL 590
           K    S+IE+ + +H F V D  H     +Y++L ++
Sbjct: 452 KRAGYSYIEVGDGIHEFIVEDRSHLKSGEIYALLHKI 488



 Score =  146 bits (369), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 90/349 (25%), Positives = 172/349 (49%), Gaps = 37/349 (10%)

Query: 54  TLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDK 113
           +  F+   CA   ++  G+ +H H   +   +   F    L+ MY K G    AR++FD+
Sbjct: 84  SFTFLFPACASLFNVYPGQMLHSHFCKSGFAS-DMFAMTALLDMYAKLGMLRSARQLFDE 142

Query: 114 IPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFY 173
           +PV+++ ++N++++GYA  G M+ A  LF+ M  R+V+SW  +I GYA++G   + L+ +
Sbjct: 143 MPVRDIPTWNSLIAGYARSGHMEAALELFNKMPVRNVISWTALISGYAQNGKYAKALEMF 202

Query: 174 KVLR-RFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAK 232
             L        NE S A +L  C +L  L + +++       GF  N  +S+++++ +A+
Sbjct: 203 IGLENEKGTKPNEVSIASVLPACSQLGALDIGKRIEAYARNNGFFKNAYVSNAVLELHAR 262

Query: 233 CGELSDARRLFDETDA-RDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAG 291
           CG + +A+++FDE  + R++ +W TM+ G A                             
Sbjct: 263 CGNIEEAQQVFDEIGSKRNLCSWNTMIMGLAV---------------------------- 294

Query: 292 YTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSN 351
              +G    AL+L+ +M+I ++RP+  TF   L AC     +  G+Q+   +  + F+  
Sbjct: 295 ---HGRCIDALQLYDQMLIRKMRPDDVTFVGLLLACTHGGMVAEGRQLFESM-ESKFQVA 350

Query: 352 TIV--MSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHG 398
             +     L+D+  + G L +   +        +S++W T++ A + HG
Sbjct: 351 PKLEHYGCLVDLLGRAGELQEAYNLIQNMPMAPDSVIWGTLLGACSFHG 399



 Score =  102 bits (255), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 67/258 (25%), Positives = 131/258 (50%), Gaps = 16/258 (6%)

Query: 263 KLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSS 322
           +L D+  A  LF+++P+ +   +   I  ++  G   +   L+ +M      PNQ++F+ 
Sbjct: 28  QLPDLPYACTLFDQIPKPSVYLYNKFIQTFSSIGHPHRCWLLYCQMCSQGCSPNQYSFTF 87

Query: 323 CLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKE 382
              ACAS+ ++  G+ +H    ++ F S+   M++L+DMY+K G L   RQ+FD    ++
Sbjct: 88  LFPACASLFNVYPGQMLHSHFCKSGFASDMFAMTALLDMYAKLGMLRSARQLFDEMPVRD 147

Query: 383 NSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYF 442
               WN++I+   + G+ E A+ LF+ M   +V    I+   +++    +G   + L  F
Sbjct: 148 IPT-WNSLIAGYARSGHMEAALELFNKMPVRNV----ISWTALISGYAQNGKYAKALEMF 202

Query: 443 ESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMP----YEHDSYLWNA---LHG 495
             + ++ G  PN+   A ++   +Q G  D +  ++E       +  ++Y+ NA   LH 
Sbjct: 203 IGLENEKGTKPNEVSIASVLPACSQLGALD-IGKRIEAYARNNGFFKNAYVSNAVLELHA 261

Query: 496 VCRIHGNIDMGRKVVDQL 513
            C   GNI+  ++V D++
Sbjct: 262 RC---GNIEEAQQVFDEI 276



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 70/291 (24%), Positives = 127/291 (43%), Gaps = 51/291 (17%)

Query: 21  IQSFLSLIS----KGQLSEAISS-LDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVH 75
           + S+ +LIS     G+ ++A+   + L  ++G +    ++A +L  C++  +L +GKR+ 
Sbjct: 179 VISWTALISGYAQNGKYAKALEMFIGLENEKGTKPNEVSIASVLPACSQLGALDIGKRIE 238

Query: 76  LHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVK-NLFSYNNMLSGYANLGM 134
            + +         ++SN ++ ++ +CG+  +A++VFD+I  K NL S+N M+ G A  G 
Sbjct: 239 AYAR-NNGFFKNAYVSNAVLELHARCGNIEEAQQVFDEIGSKRNLCSWNTMIMGLAVHGR 297

Query: 135 MKHARNLFDNMAER----DVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAG 190
              A  L+D M  R    D V++  +++     G V EG + ++            S   
Sbjct: 298 CIDALQLYDQMLIRKMRPDDVTFVGLLLACTHGGMVAEGRQLFE------------SMES 345

Query: 191 ILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETD-AR 249
              +  KLE                          +VD   + GEL +A  L      A 
Sbjct: 346 KFQVAPKLEHY----------------------GCLVDLLGRAGELQEAYNLIQNMPMAP 383

Query: 250 DVLTWTTMVSGYAKLGDME----SASKLFNEMPEKNPVSWTTLIAGYTRNG 296
           D + W T++   +  G++E    +A  LF   P  NP ++  L   Y   G
Sbjct: 384 DSVIWGTLLGACSFHGNVELGEVAAESLFKLEP-WNPGNYVILSNIYALAG 433


>gi|356528451|ref|XP_003532816.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Glycine max]
          Length = 579

 Score =  302 bits (774), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 164/520 (31%), Positives = 288/520 (55%), Gaps = 41/520 (7%)

Query: 107 ARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAV 166
           ARK+FD++  K++ ++N+MLS Y   G+++ ++ LF +M  R+VVSWN++I    ++  +
Sbjct: 48  ARKLFDEMATKDVVTWNSMLSAYWQNGLLQRSKALFHSMPLRNVVSWNSIIAACVQNDNL 107

Query: 167 EEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSI 226
           ++  ++       +   N  S+  I++   +   +K  +++   +       NVV  +++
Sbjct: 108 QDAFRYLAA----APEKNAASYNAIISGLARCGRMKDAQRLFEAMPCP----NVVSYTAM 159

Query: 227 VDAYAKC-GELSDARRLFDETDARDVLTW------------------------------- 254
           VD YA+  G +  AR LF+    R+ ++W                               
Sbjct: 160 VDGYARVEGGIGRARALFEAMPRRNSVSWVVMINGLVENGLCEEAWEVFVRMPQKNDVAR 219

Query: 255 TTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIR 314
           T M++G+ K G ME A  LF E+  ++ VSW  ++ GY +NG G++AL LF++M+   ++
Sbjct: 220 TAMITGFCKEGRMEDARDLFQEIRCRDLVSWNIIMTGYAQNGRGEEALNLFSQMIRTGMQ 279

Query: 315 PNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQV 374
           P+  TF S   ACAS+ SL+ G + H  LI+  F S+  V ++LI ++SKCG + D   V
Sbjct: 280 PDDLTFVSVFIACASLASLEEGSKAHALLIKHGFDSDLSVCNALITVHSKCGGIVDSELV 339

Query: 375 FDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGL 434
           F    + +  + WNT+I+A  QHG  ++A   F  MV  SV+PD IT   +L+AC  +G 
Sbjct: 340 FGQISHPD-LVSWNTIIAAFAQHGLYDKARSYFDQMVTVSVQPDGITFLSLLSACCRAGK 398

Query: 435 VQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALH 494
           V E +  F  M  + GI P  EH+ACL++++++AG   +    + +MP++ DS +W A+ 
Sbjct: 399 VNESMNLFSLMVDNYGIPPRSEHYACLVDVMSRAGQLQRACKIINEMPFKADSSIWGAVL 458

Query: 495 GVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKK 554
             C +H N+++G     ++++ +P +S  + +LS+IY+A GK + V ++R L+ E+  KK
Sbjct: 459 AACSVHLNVELGELAARRILNLDPFNSGAYVMLSNIYAAAGKWKDVHRIRVLMKEQGVKK 518

Query: 555 EQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQM 594
           + A SW++I NK H F   D  HP  + ++  L ++   M
Sbjct: 519 QTAYSWLQIGNKTHYFVGGDPSHPNINDIHVALRRITLHM 558



 Score =  146 bits (368), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 107/408 (26%), Positives = 184/408 (45%), Gaps = 59/408 (14%)

Query: 117 KNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLK-FYKV 175
           ++++  N  +   +  G +  AR LFD MA +DVV+WN+M+  Y ++G ++     F+ +
Sbjct: 27  RDVYHANLDIVALSRAGKVDAARKLFDEMATKDVVTWNSMLSAYWQNGLLQRSKALFHSM 86

Query: 176 LRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGE 235
             R     N  S+  I+  CV+ + L    Q   + L      N    ++I+   A+CG 
Sbjct: 87  PLR-----NVVSWNSIIAACVQNDNL----QDAFRYLAAAPEKNAASYNAIISGLARCGR 137

Query: 236 LSDARRLFDETDARDVLTWTTMVSGYAKL-GDMESASKLFNEMPEKNPVSWTTLIAGYTR 294
           + DA+RLF+     +V+++T MV GYA++ G +  A  LF  MP +N VSW  +I G   
Sbjct: 138 MKDAQRLFEAMPCPNVVSYTAMVDGYARVEGGIGRARALFEAMPRRNSVSWVVMINGLVE 197

Query: 295 NGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIV 354
           NGL ++A E+F RM      P +                                 N + 
Sbjct: 198 NGLCEEAWEVFVRM------PQK---------------------------------NDVA 218

Query: 355 MSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSS 414
            +++I  + K G + D R +F     ++  + WN +++   Q+G  E+A+ LF  M+R+ 
Sbjct: 219 RTAMITGFCKEGRMEDARDLFQEIRCRD-LVSWNIIMTGYAQNGRGEEALNLFSQMIRTG 277

Query: 415 VKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIP--NQEHHACLIELLAQAGCSD 472
           ++PD +T   +  AC     ++EG     S  H L I    + +   C   +   + C  
Sbjct: 278 MQPDDLTFVSVFIACASLASLEEG-----SKAHALLIKHGFDSDLSVCNALITVHSKCGG 332

Query: 473 QLMNQLEKMPYEH-DSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQ 519
            + ++L      H D   WN +      HG  D  R   DQ++  + Q
Sbjct: 333 IVDSELVFGQISHPDLVSWNTIIAAFAQHGLYDKARSYFDQMVTVSVQ 380



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 68/293 (23%), Positives = 141/293 (48%), Gaps = 32/293 (10%)

Query: 106 DARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGA 165
           +A +VF ++P KN  +   M++G+   G M+ AR+LF  +  RD+VSWN ++ GYA++G 
Sbjct: 203 EAWEVFVRMPQKNDVARTAMITGFCKEGRMEDARDLFQEIRCRDLVSWNIIMTGYAQNGR 262

Query: 166 VEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSS 225
            EE L  +  + R  +  ++ +F  +   C  L  L+   + H  ++  GF S++ + ++
Sbjct: 263 GEEALNLFSQMIRTGMQPDDLTFVSVFIACASLASLEEGSKAHALLIKHGFDSDLSVCNA 322

Query: 226 IVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSW 285
           ++  ++KCG + D+  +F +    D+++W T+++ +A+                      
Sbjct: 323 LITVHSKCGGIVDSELVFGQISHPDLVSWNTIIAAFAQ---------------------- 360

Query: 286 TTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIR 345
                    +GL  KA   F +M+ + ++P+  TF S L AC     +     +   ++ 
Sbjct: 361 ---------HGLYDKARSYFDQMVTVSVQPDGITFLSLLSACCRAGKVNESMNLFSLMVD 411

Query: 346 T-NFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQH 397
                  +   + L+D+ S+ G L    ++ +    K +S +W  +++A + H
Sbjct: 412 NYGIPPRSEHYACLVDVMSRAGQLQRACKIINEMPFKADSSIWGAVLAACSVH 464



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 68/245 (27%), Positives = 121/245 (49%), Gaps = 17/245 (6%)

Query: 205 RQVHGQ-VLVTGFLSNVVISSSIVD--AYAKCGELSDARRLFDETDARDVLTWTTMVSGY 261
           RQ H   VL T F S   +  + +D  A ++ G++  AR+LFDE   +DV+TW +M+S Y
Sbjct: 11  RQRHSFFVLATLFSSTRDVYHANLDIVALSRAGKVDAARKLFDEMATKDVVTWNSMLSAY 70

Query: 262 AKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFS 321
            + G ++ +  LF+ MP +N VSW ++IA   +N   Q A     R +      N  +++
Sbjct: 71  WQNGLLQRSKALFHSMPLRNVVSWNSIIAACVQNDNLQDAF----RYLAAAPEKNAASYN 126

Query: 322 SCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKC-GCLNDGRQVFDLTDN 380
           + +   A    +K  ++    L       N +  ++++D Y++  G +   R +F+    
Sbjct: 127 AIISGLARCGRMKDAQR----LFEAMPCPNVVSYTAMVDGYARVEGGIGRARALFEAMP- 181

Query: 381 KENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLT 440
           + NS+ W  MI+ L ++G  E+A  +F   VR   K D    A+I   C   G +++   
Sbjct: 182 RRNSVSWVVMINGLVENGLCEEAWEVF---VRMPQKNDVARTAMITGFCKE-GRMEDARD 237

Query: 441 YFESM 445
            F+ +
Sbjct: 238 LFQEI 242



 Score = 60.1 bits (144), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 57/270 (21%), Positives = 123/270 (45%), Gaps = 11/270 (4%)

Query: 31  GQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFL 90
           G+  EA++    + + G++    T   +   CA   SL+ G + H  L +         +
Sbjct: 261 GRGEEALNLFSQMIRTGMQPDDLTFVSVFIACASLASLEEGSKAHA-LLIKHGFDSDLSV 319

Query: 91  SNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNM----A 146
            N LI+++ KCG  VD+  VF +I   +L S+N +++ +A  G+   AR+ FD M     
Sbjct: 320 CNALITVHSKCGGIVDSELVFGQISHPDLVSWNTIIAAFAQHGLYDKARSYFDQMVTVSV 379

Query: 147 ERDVVSWNTMIIGYAKSGAVEEGLKFYKVL-RRFSISCNEFSFAGILTICVKLEELKLTR 205
           + D +++ +++    ++G V E +  + ++   + I      +A ++ +  +  +L+   
Sbjct: 380 QPDGITFLSLLSACCRAGKVNESMNLFSLMVDNYGIPPRSEHYACLVDVMSRAGQLQRAC 439

Query: 206 QVHGQVLVTGFLS--NVVISSSIVDAYAKCGELSDARRL--FDETDARDVLTWTTMVSGY 261
           ++  ++      S    V+++  V    + GEL+ ARR+   D  ++   +  + + +  
Sbjct: 440 KIINEMPFKADSSIWGAVLAACSVHLNVELGELA-ARRILNLDPFNSGAYVMLSNIYAAA 498

Query: 262 AKLGDMESASKLFNEMPEKNPVSWTTLIAG 291
            K  D+     L  E   K   +++ L  G
Sbjct: 499 GKWKDVHRIRVLMKEQGVKKQTAYSWLQIG 528


>gi|242062682|ref|XP_002452630.1| hypothetical protein SORBIDRAFT_04g029423 [Sorghum bicolor]
 gi|241932461|gb|EES05606.1| hypothetical protein SORBIDRAFT_04g029423 [Sorghum bicolor]
          Length = 605

 Score =  302 bits (774), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 175/529 (33%), Positives = 272/529 (51%), Gaps = 47/529 (8%)

Query: 81  TQRKTPTTFLSNHLISMYFKC---GSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKH 137
           TQ KT TT+  N L++ Y K    G   DAR++FD IP  +  SYN +LS +   G +  
Sbjct: 33  TQLKTTTTY--NCLLAGYAKASGPGRLADARRLFDSIPHPDAVSYNTLLSCHFACGDIDG 90

Query: 138 ARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVK 197
           A  +F  M  RDV SWNTM+ G +K+GA+EE    ++ +                     
Sbjct: 91  AWRVFSTMPVRDVTSWNTMVSGLSKNGAIEEAEAMFRAMP-------------------- 130

Query: 198 LEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLF-DETDARDVLTWTT 256
                                N V  +++V A A  G++  A  LF +  +  D + WT 
Sbjct: 131 -------------------ARNAVSWNAMVAARASSGDMGAAENLFRNAPEKTDAILWTA 171

Query: 257 MVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRI-RP 315
           MVSGY   G+++ A + F  MP +N VSW  ++AGY +N     AL +F  M+   I +P
Sbjct: 172 MVSGYMDTGNVQKAMEYFRAMPVRNLVSWNAVVAGYVKNSRAGDALRVFKTMVEDAIVQP 231

Query: 316 NQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVF 375
           N  T SS L  C+++ +L  G+QVH + ++     +  V +SL+ MY KCG L+D  ++F
Sbjct: 232 NPSTLSSVLLGCSNLSALGFGRQVHQWCMKLPLGRSITVGTSLLSMYCKCGDLDDACKLF 291

Query: 376 DLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLV 435
           D    K+  + WN MIS   QHG   +AI+LF  M    V PD ITL  +L AC H+GL 
Sbjct: 292 DEMHTKD-IVAWNAMISGYAQHGGGRKAIKLFEKMKDEGVVPDWITLLAVLTACIHTGLC 350

Query: 436 QEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHG 495
             G+  FE+M     I P  +H++C+++LL +AG  ++ +N +  MP+E     +  L  
Sbjct: 351 DFGIQCFETMQEAYNIEPQVDHYSCMVDLLCRAGLLERAVNMIHSMPFEPHPSAYGTLLT 410

Query: 496 VCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKE 555
            CR++ N++       +LI+Q+PQ++  +  L++IY+   +   V +VR+ + +    K 
Sbjct: 411 ACRVYKNLEFAEFAARKLIEQDPQNAGAYVQLANIYAVANRWDDVSRVRRWMKDNAVVKT 470

Query: 556 QAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQMGEDAPSLDAD 604
              SW+EI+   H F  +D LHP  D+++  L++L   M     S D D
Sbjct: 471 PGYSWMEIKGVRHEFRSNDRLHPQLDLIHDKLDRLGKLMKAMGYSPDLD 519


>gi|449468888|ref|XP_004152153.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g13230, mitochondrial-like [Cucumis sativus]
 gi|449515059|ref|XP_004164567.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g13230, mitochondrial-like [Cucumis sativus]
          Length = 721

 Score =  302 bits (774), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 167/558 (29%), Positives = 292/558 (52%), Gaps = 64/558 (11%)

Query: 33  LSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSN 92
            SEA+     +   G +    T A +L+ C   ++   GK VH  + L        ++  
Sbjct: 128 FSEALEFFSQMRVAGFKPNNFTFAGVLKACLGLQNFDAGKTVHCSV-LKTNYERDLYVGV 186

Query: 93  HLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVS 152
            L+ +Y +CG + DA + F  +P                               + DV+ 
Sbjct: 187 GLLELYTRCGDNDDAWRAFGDMP-------------------------------KNDVIP 215

Query: 153 WNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVL 212
           W+ MI  +A+SG  E+ L+ +  +RR  +  N+F+F+ +L     +E L L++ +HG  L
Sbjct: 216 WSFMISRFAQSGQSEKALEIFCQMRRAFVIPNQFTFSSVLQASADIESLDLSKTIHGHAL 275

Query: 213 VTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASK 272
             G  ++V +S++                               +++ YAK G +E + +
Sbjct: 276 KAGLSTDVFVSNA-------------------------------LMACYAKCGCIEQSME 304

Query: 273 LFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVS 332
           LF  + ++N VSW T+I  Y + G G++AL LF+ M+  +++  + T+SS L ACA++ +
Sbjct: 305 LFEALSDRNDVSWNTIIVSYVQLGDGERALSLFSNMLRYQVQATEVTYSSILRACATLAA 364

Query: 333 LKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMIS 392
           L+ G QVH    +T +  +  V ++LIDMY+KCG + D R +FD+ D ++  + WN +I 
Sbjct: 365 LELGLQVHCLTAKTIYGQDVAVGNALIDMYAKCGSIKDARFMFDMLDLRDK-VSWNAIIC 423

Query: 393 ALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGII 452
             + HG   +AI++F+ M  +  KPD++T   +L+AC+++G + EG  YF SM  D GI 
Sbjct: 424 GYSMHGLGVEAIKMFNLMKETKCKPDELTFVGVLSACSNTGRLDEGKQYFTSMKQDYGIE 483

Query: 453 PNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQ 512
           P  EH+ C++ L+ ++G  DQ +  +E +P+E    +W AL G C IH ++++GR    +
Sbjct: 484 PCMEHYTCMVWLMGRSGNLDQAVKFIEDIPFEPSVMIWRALLGACVIHNDVELGRISAQR 543

Query: 513 LIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSV 572
           +++  P+  A+H LLS+IY+   +   V  VR+ +  +  KKE  +SWIE +  VH F+V
Sbjct: 544 VLELEPRDEASHVLLSNIYARARRWGNVAYVRKHMKRKGVKKEPGLSWIENQGNVHCFTV 603

Query: 573 SDSLHPMRDVLYSVLEQL 590
           +D+ H    ++  +LE L
Sbjct: 604 ADTSHADLKLINGMLEFL 621



 Score =  160 bits (406), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 107/357 (29%), Positives = 177/357 (49%), Gaps = 42/357 (11%)

Query: 141 LFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEE 200
           +FD M ER+ VS+ T+I GYA+S    E  + +  L       N F F  +L + V +E 
Sbjct: 2   VFDEMPERNTVSFVTLIHGYAQSNKFIEAFELFARLHGEGHELNPFVFTTVLKLLVSMEW 61

Query: 201 LKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSG 260
            +L R VHG VL  G+ SN  I ++++DAY+  G +S AR +FDE  ++D+++WT M++ 
Sbjct: 62  AELGRIVHGCVLKVGYGSNTFIGTALIDAYSVSGCVSMAREVFDEISSKDMVSWTGMIAS 121

Query: 261 YAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTF 320
           YA+                               N    +ALE F++M +   +PN  TF
Sbjct: 122 YAE-------------------------------NDCFSEALEFFSQMRVAGFKPNNFTF 150

Query: 321 SSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDN 380
           +  L AC  + +   GK VH  +++TN+  +  V   L+++Y++CG  +D  + F   D 
Sbjct: 151 AGVLKACLGLQNFDAGKTVHCSVLKTNYERDLYVGVGLLELYTRCGDNDDAWRAFG--DM 208

Query: 381 KENSML-WNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGL 439
            +N ++ W+ MIS   Q G  E+A+ +F  M R+ V P++ T + +L A        E L
Sbjct: 209 PKNDVIPWSFMISRFAQSGQSEKALEIFCQMRRAFVIPNQFTFSSVLQASADI----ESL 264

Query: 440 TYFESM-THDL--GIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNAL 493
              +++  H L  G+  +      L+   A+ GC +Q M   E +   +D   WN +
Sbjct: 265 DLSKTIHGHALKAGLSTDVFVSNALMACYAKCGCIEQSMELFEALSDRNDVS-WNTI 320



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 92/393 (23%), Positives = 171/393 (43%), Gaps = 77/393 (19%)

Query: 14  NLPNNCLIQSFLSLISKGQLSEAISSLDLLAQ--RGIRLPAE-TLAFILQQCAESKSLKL 70
           ++P N +I     +    Q  ++  +L++  Q  R   +P + T + +LQ  A+ +SL L
Sbjct: 207 DMPKNDVIPWSFMISRFAQSGQSEKALEIFCQMRRAFVIPNQFTFSSVLQASADIESLDL 266

Query: 71  GKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYA 130
            K +H H  L    +   F+SN L++ Y KCG    + ++F+ +  +N  S+N ++  Y 
Sbjct: 267 SKTIHGH-ALKAGLSTDVFVSNALMACYAKCGCIEQSMELFEALSDRNDVSWNTIIVSYV 325

Query: 131 NLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAG 190
            LG  + A +LF NM                                R+ +   E +++ 
Sbjct: 326 QLGDGERALSLFSNML-------------------------------RYQVQATEVTYSS 354

Query: 191 ILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARD 250
           IL  C  L  L+L  QVH     T +  +V + ++++D YAKCG + DAR +FD  D RD
Sbjct: 355 ILRACATLAALELGLQVHCLTAKTIYGQDVAVGNALIDMYAKCGSIKDARFMFDMLDLRD 414

Query: 251 VLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMI 310
            ++W  ++ GY                               + +GLG +A+++F  M  
Sbjct: 415 KVSWNAIICGY-------------------------------SMHGLGVEAIKMFNLMKE 443

Query: 311 LRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIV------MSSLIDMYSK 364
            + +P++ TF   L AC++   L  GKQ       T+ + +  +       + ++ +  +
Sbjct: 444 TKCKPDELTFVGVLSACSNTGRLDEGKQYF-----TSMKQDYGIEPCMEHYTCMVWLMGR 498

Query: 365 CGCLNDGRQVFDLTDNKENSMLWNTMISALTQH 397
            G L+   +  +    + + M+W  ++ A   H
Sbjct: 499 SGNLDQAVKFIEDIPFEPSVMIWRALLGACVIH 531



 Score = 65.9 bits (159), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 46/172 (26%), Positives = 90/172 (52%), Gaps = 8/172 (4%)

Query: 11  NRKNLPNNCLIQSFLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKL 70
           +R ++  N +I S++ L   G    A+S    + +  ++    T + IL+ CA   +L+L
Sbjct: 311 DRNDVSWNTIIVSYVQL---GDGERALSLFSNMLRYQVQATEVTYSSILRACATLAALEL 367

Query: 71  GKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYA 130
           G +VH     T        + N LI MY KCGS  DAR +FD + +++  S+N ++ GY+
Sbjct: 368 GLQVHCLTAKTIYGQDVA-VGNALIDMYAKCGSIKDARFMFDMLDLRDKVSWNAIICGYS 426

Query: 131 NLGMMKHARNLFDNMAER----DVVSWNTMIIGYAKSGAVEEGLKFYKVLRR 178
             G+   A  +F+ M E     D +++  ++   + +G ++EG +++  +++
Sbjct: 427 MHGLGVEAIKMFNLMKETKCKPDELTFVGVLSACSNTGRLDEGKQYFTSMKQ 478


>gi|449455978|ref|XP_004145727.1| PREDICTED: uncharacterized protein LOC101212001 [Cucumis sativus]
          Length = 2598

 Score =  302 bits (774), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 172/569 (30%), Positives = 295/569 (51%), Gaps = 57/569 (10%)

Query: 27   LISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTP 86
            L   G   EA+ +   L + G+     +    ++ C+    L  G+  H    +   +T 
Sbjct: 1990 LARGGDSVEALRAFSSLRKLGLIPTRSSFPCTIKSCSALCDLVSGRMSHQQAFVFGFET- 2048

Query: 87   TTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMA 146
              F+S+ LI MY KCG   DAR +FD+IP++N+ S+ +M++GY       +A  LF +  
Sbjct: 2049 DLFVSSALIDMYSKCGQLKDARALFDEIPLRNVVSWTSMITGYVQNEQADNALLLFKDFL 2108

Query: 147  ERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQ 206
            E +                VE+G          ++  +      +L+ C ++    +T  
Sbjct: 2109 EEET--------------EVEDG---------NNVPLDSVVMVSVLSACSRVSGKGITEG 2145

Query: 207  VHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGD 266
            VHG V+  GF  ++ + ++++DAYAKCG+   ++++FD  + +D ++W +M         
Sbjct: 2146 VHGFVVKKGFDGSIGVGNTLMDAYAKCGQPLVSKKVFDWMEEKDDISWNSM--------- 2196

Query: 267  MESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMI-LRIRPNQHTFSSCLC 325
                                  IA Y ++GL  +ALE+F  M+  + +R N  T S+ L 
Sbjct: 2197 ----------------------IAVYAQSGLSGEALEVFHGMVRHVGVRYNAVTLSAVLL 2234

Query: 326  ACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSM 385
            ACA   +L+ GK +H  +I+ +   N  V +S+IDMY KCG +   ++ FD    K N  
Sbjct: 2235 ACAHAGALRAGKCIHDQVIKMDLEYNVCVGTSIIDMYCKCGRVEMAKKTFDRMKEK-NVK 2293

Query: 386  LWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESM 445
             W  M++    HG  ++A+ +F+ MVR+ VKP+ IT   +L AC+H+GLV+EG  +F +M
Sbjct: 2294 SWTAMVAGYGMHGRAKEALDIFYKMVRAGVKPNYITFVSVLAACSHAGLVEEGWHWFNAM 2353

Query: 446  THDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDM 505
             H   I P  EH+ C+++L  +AGC ++  N +++M  + D  +W +L G CRIH N+D+
Sbjct: 2354 KHKYDIEPGIEHYGCMVDLFGRAGCLNEAYNLIKRMKMKPDFVVWGSLLGACRIHKNVDL 2413

Query: 506  GRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIEN 565
            G     +L + +P +   + LLS++Y+  G+   VE++R L+  RQ  K    S +E++ 
Sbjct: 2414 GEIAAQKLFELDPDNCGYYVLLSNLYADAGRWADVERMRMLMKNRQLVKPPGFSLVELKG 2473

Query: 566  KVHAFSVSDSLHPMRDVLYSVLEQLAGQM 594
            +VH F V D  HP  +++Y  LE+L  ++
Sbjct: 2474 RVHVFLVGDKEHPHHEMIYKYLEKLTLEL 2502



 Score =  249 bits (637), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 125/345 (36%), Positives = 200/345 (57%), Gaps = 1/345 (0%)

Query: 129 YANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSF 188
           Y+  G + +A  LF  +      +WN +I     +G  E+ L  YK +    I+ ++F+F
Sbjct: 69  YSTHGRIAYAILLFYQIQNPCTFTWNLIIRANTINGLSEQALMLYKNMVCQGIAADKFTF 128

Query: 189 AGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDA 248
             ++  C     + L + VHG ++  GF  +V + ++++D Y KCG    A ++F++   
Sbjct: 129 PFVIKACTNFLSIDLGKVVHGSLIKYGFSGDVFVQNNLIDFYFKCGHTRFALKVFEKMRV 188

Query: 249 RDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRM 308
           R+V++WTT++SG    GD++ A ++F+E+P KN VSWT +I GY RN   ++ALELF RM
Sbjct: 189 RNVVSWTTVISGLISCGDLQEARRIFDEIPSKNVVSWTAMINGYIRNQQPEEALELFKRM 248

Query: 309 MILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCL 368
               I PN++T  S + AC  +  L  G+ +H + I+        + ++LIDMYSKCG +
Sbjct: 249 QAENIFPNEYTMVSLIKACTEMGILTLGRGIHDYAIKNCIEIGVYLGTALIDMYSKCGSI 308

Query: 369 NDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNA 428
            D  +VF+ T  +++   WN+MI++L  HG  ++A+ LF +M R +VKPD IT   +L A
Sbjct: 309 KDAIEVFE-TMPRKSLPTWNSMITSLGVHGLGQEALNLFSEMERVNVKPDAITFIGVLCA 367

Query: 429 CTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQ 473
           C H   V+EG  YF  MT   GI P  EH+ C+ EL A++   D+
Sbjct: 368 CVHIKNVKEGCAYFTRMTQHYGIAPIPEHYECMTELYARSNNLDE 412



 Score =  166 bits (420), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 128/461 (27%), Positives = 224/461 (48%), Gaps = 55/461 (11%)

Query: 105  VDARKVFDKIPVKNLFSYNNMLSGYANLGMMKH---ARNLFDNMAERDVVSWNTMIIGYA 161
            V+  + FD I      +YN++L G  + G   H   A   +  + + +V SWN++I   A
Sbjct: 1939 VNFYECFDGI------TYNSILFGVPS-GREDHSNLATWFYKYVDKSNVHSWNSVIADLA 1991

Query: 162  KSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVV 221
            + G   E L+ +  LR+  +     SF   +  C  L +L   R  H Q  V GF +++ 
Sbjct: 1992 RGGDSVEALRAFSSLRKLGLIPTRSSFPCTIKSCSALCDLVSGRMSHQQAFVFGFETDLF 2051

Query: 222  ISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKN 281
            +SS+++D Y+KCG+L DAR LFDE   R+V++WT+M++GY +    ++A  LF +  E+ 
Sbjct: 2052 VSSALIDMYSKCGQLKDARALFDEIPLRNVVSWTSMITGYVQNEQADNALLLFKDFLEEE 2111

Query: 282  PVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHG 341
                T +  G          + L + +M+           S L AC+ +      + VHG
Sbjct: 2112 ----TEVEDG--------NNVPLDSVVMV-----------SVLSACSRVSGKGITEGVHG 2148

Query: 342  FLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDE 401
            F+++  F  +  V ++L+D Y+KCG     ++VFD  + K++ + WN+MI+   Q G   
Sbjct: 2149 FVVKKGFDGSIGVGNTLMDAYAKCGQPLVSKKVFDWMEEKDD-ISWNSMIAVYAQSGLSG 2207

Query: 402  QAIRLFHDMVRS-SVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHAC 460
            +A+ +FH MVR   V+ + +TL+ +L AC H+G ++ G        HD  I  + E++ C
Sbjct: 2208 EALEVFHGMVRHVGVRYNAVTLSAVLLACAHAGALRAG-----KCIHDQVIKMDLEYNVC 2262

Query: 461  ----LIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGN----IDMGRKVVDQ 512
                +I++  + G  +      ++M  E +   W A+     +HG     +D+  K+V  
Sbjct: 2263 VGTSIIDMYCKCGRVEMAKKTFDRMK-EKNVKSWTAMVAGYGMHGRAKEALDIFYKMVRA 2321

Query: 513  LIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFK 553
             +  N      +    S+ +A     LVE+     N  + K
Sbjct: 2322 GVKPN------YITFVSVLAACSHAGLVEEGWHWFNAMKHK 2356



 Score =  157 bits (397), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 89/291 (30%), Positives = 150/291 (51%), Gaps = 32/291 (10%)

Query: 46  RGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDV 105
           +GI     T  F+++ C    S+ LGK VH  L +    +   F+ N+LI  YFKCG   
Sbjct: 119 QGIAADKFTFPFVIKACTNFLSIDLGKVVHGSL-IKYGFSGDVFVQNNLIDFYFKCGHTR 177

Query: 106 DARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGA 165
            A KVF+K+ V+N+ S+  ++SG  + G ++ AR +FD +  ++VVSW  MI GY ++  
Sbjct: 178 FALKVFEKMRVRNVVSWTTVISGLISCGDLQEARRIFDEIPSKNVVSWTAMINGYIRNQQ 237

Query: 166 VEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSS 225
            EE L+ +K ++  +I  NE++   ++  C ++  L L R +H   +       V + ++
Sbjct: 238 PEEALELFKRMQAENIFPNEYTMVSLIKACTEMGILTLGRGIHDYAIKNCIEIGVYLGTA 297

Query: 226 IVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSW 285
           ++D Y+KCG + DA  +F+    + + TW +M++    LG                    
Sbjct: 298 LIDMYSKCGSIKDAIEVFETMPRKSLPTWNSMITS---LG-------------------- 334

Query: 286 TTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHG 336
                    +GLGQ+AL LF+ M  + ++P+  TF   LCAC  I ++K G
Sbjct: 335 --------VHGLGQEALNLFSEMERVNVKPDAITFIGVLCACVHIKNVKEG 377



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 75/289 (25%), Positives = 126/289 (43%), Gaps = 42/289 (14%)

Query: 248 ARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTR 307
           + D L    ++  Y+  G +  A  LF ++      +W  +I   T NGL ++AL L+  
Sbjct: 56  SNDQLLTRKLIHLYSTHGRIAYAILLFYQIQNPCTFTWNLIIRANTINGLSEQALMLYKN 115

Query: 308 MMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCG- 366
           M+   I  ++ TF   + AC + +S+  GK VHG LI+  F  +  V ++LID Y KCG 
Sbjct: 116 MVCQGIAADKFTFPFVIKACTNFLSIDLGKVVHGSLIKYGFSGDVFVQNNLIDFYFKCGH 175

Query: 367 ----------------------------C--LNDGRQVFDLTDNKENSMLWNTMISALTQ 396
                                       C  L + R++FD   +K N + W  MI+   +
Sbjct: 176 TRFALKVFEKMRVRNVVSWTTVISGLISCGDLQEARRIFDEIPSK-NVVSWTAMINGYIR 234

Query: 397 HGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQE 456
           +   E+A+ LF  M   ++ P++ T+  ++ ACT  G++  G        HD  I    E
Sbjct: 235 NQQPEEALELFKRMQAENIFPNEYTMVSLIKACTEMGILTLG-----RGIHDYAIKNCIE 289

Query: 457 ----HHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHG 501
                   LI++ ++ G     +   E MP +     WN++     +HG
Sbjct: 290 IGVYLGTALIDMYSKCGSIKDAIEVFETMPRKSLP-TWNSMITSLGVHG 337



 Score = 58.9 bits (141), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 47/191 (24%), Positives = 86/191 (45%), Gaps = 13/191 (6%)

Query: 332 SLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMI 391
           + KH +Q+H  +IR+   ++ ++   LI +YS  G +     +F    N   +  WN +I
Sbjct: 39  NFKHLRQIHAKIIRSGLSNDQLLTRKLIHLYSTHGRIAYAILLFYQIQN-PCTFTWNLII 97

Query: 392 SALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHS-----GLVQEGLTYFESMT 446
            A T +G  EQA+ L+ +MV   +  DK T   ++ ACT+      G V  G       +
Sbjct: 98  RANTINGLSEQALMLYKNMVCQGIAADKFTFPFVIKACTNFLSIDLGKVVHGSLIKYGFS 157

Query: 447 HDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMG 506
            D+ +  N      LI+   + G +   +   EKM   +       + G+    G++   
Sbjct: 158 GDVFVQNN------LIDFYFKCGHTRFALKVFEKMRVRNVVSWTTVISGLISC-GDLQEA 210

Query: 507 RKVVDQLIDQN 517
           R++ D++  +N
Sbjct: 211 RRIFDEIPSKN 221



 Score = 53.1 bits (126), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 39/175 (22%), Positives = 68/175 (38%), Gaps = 32/175 (18%)

Query: 28  ISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPT 87
           I   Q  EA+     +    I     T+  +++ C E   L LG+ +H +  +       
Sbjct: 233 IRNQQPEEALELFKRMQAENIFPNEYTMVSLIKACTEMGILTLGRGIHDY-AIKNCIEIG 291

Query: 88  TFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAE 147
            +L   LI MY KCGS                               +K A  +F+ M  
Sbjct: 292 VYLGTALIDMYSKCGS-------------------------------IKDAIEVFETMPR 320

Query: 148 RDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELK 202
           + + +WN+MI      G  +E L  +  + R ++  +  +F G+L  CV ++ +K
Sbjct: 321 KSLPTWNSMITSLGVHGLGQEALNLFSEMERVNVKPDAITFIGVLCACVHIKNVK 375


>gi|224124674|ref|XP_002330082.1| predicted protein [Populus trichocarpa]
 gi|222871507|gb|EEF08638.1| predicted protein [Populus trichocarpa]
          Length = 665

 Score =  302 bits (773), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 170/515 (33%), Positives = 263/515 (51%), Gaps = 63/515 (12%)

Query: 107 ARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAV 166
           A KVF+ +P  N+F +N ++ G            L +N   + +  +  M+I +A+    
Sbjct: 83  ALKVFEYVPNPNVFVFNIIIKGC-----------LQNNEPCKAICCYYKMMIAHARP--- 128

Query: 167 EEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSS- 225
                            N+F++  +   C   E  +   QVH  V+  G   +V I S+ 
Sbjct: 129 -----------------NKFTYPTLFKACTAAEAAEEGVQVHAHVIKQGLSGDVHIRSAG 171

Query: 226 ------------------------------IVDAYAKCGELSDARRLFDETDARDVLTWT 255
                                         ++D Y KCGE+  A+ LF   + ++V +W 
Sbjct: 172 IQMYGSFGEVEGARRMLGEDGNSDVICFNAMIDGYLKCGEVEAAKELFWSMEDKNVGSWN 231

Query: 256 TMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRP 315
            MVSG AK G +E A +LFNEM EKN +SW+ +I GY + G  ++ALE+F  M    IRP
Sbjct: 232 VMVSGMAKCGMIEEARELFNEMKEKNEISWSAMIDGYIKGGYYKEALEVFNVMQREEIRP 291

Query: 316 NQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVF 375
            +   SS L ACA++ +L  G+ +H ++   +   + ++ ++L+DMY+KCG L+    VF
Sbjct: 292 RKFVLSSVLAACANLGALDQGRWIHAYVNNNSNSFDAVLGTALVDMYAKCGRLDMAWDVF 351

Query: 376 DLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLV 435
           +  + KE    WN MI  L  HG  E AI LF  M +   +P+ ITL  +L+AC HSG+V
Sbjct: 352 EKMEKKE-VFTWNAMICGLGMHGRAEDAIELFFKMQKQKFRPNGITLLGVLSACAHSGMV 410

Query: 436 QEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHG 495
            EGL  F SM    GI P  EH+ C+++LL +AG   +    +  MP E  + +W AL G
Sbjct: 411 DEGLRIFNSMEEVYGIEPGMEHYGCVVDLLGRAGLLGEAEEVMYSMPMEPSAAVWGALLG 470

Query: 496 VCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKE 555
            CR HG++++G +V   L++  PQ+S  + LLS+IY+  G+   V  VR+L+ ER  K  
Sbjct: 471 ACRKHGDVELGERVGKILLELEPQNSGRYALLSNIYARAGRWDDVANVRKLMKERGVKTS 530

Query: 556 QAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQL 590
             IS I+ +  VH F + D  HP    +Y +L+ +
Sbjct: 531 TGISMIDFDGVVHEFKMGDGSHPQMKNIYLMLKNM 565



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 88/316 (27%), Positives = 147/316 (46%), Gaps = 32/316 (10%)

Query: 92  NHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVV 151
           N +I  Y KCG    A+++F  +  KN+ S+N M+SG A  GM++ AR LF+ M E++ +
Sbjct: 200 NAMIDGYLKCGEVEAAKELFWSMEDKNVGSWNVMVSGMAKCGMIEEARELFNEMKEKNEI 259

Query: 152 SWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQV 211
           SW+ MI GY K G  +E L+ + V++R  I   +F  + +L  C  L  L   R +H  V
Sbjct: 260 SWSAMIDGYIKGGYYKEALEVFNVMQREEIRPRKFVLSSVLAACANLGALDQGRWIHAYV 319

Query: 212 LVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESAS 271
                  + V+ +++VD YAKCG L  A  +F++ + ++V TW  M+ G   LG      
Sbjct: 320 NNNSNSFDAVLGTALVDMYAKCGRLDMAWDVFEKMEKKEVFTWNAMICG---LG------ 370

Query: 272 KLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIV 331
                                  +G  + A+ELF +M   + RPN  T    L ACA   
Sbjct: 371 ----------------------MHGRAEDAIELFFKMQKQKFRPNGITLLGVLSACAHSG 408

Query: 332 SLKHGKQVHGFLIRT-NFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTM 390
            +  G ++   +               ++D+  + G L +  +V      + ++ +W  +
Sbjct: 409 MVDEGLRIFNSMEEVYGIEPGMEHYGCVVDLLGRAGLLGEAEEVMYSMPMEPSAAVWGAL 468

Query: 391 ISALTQHGYDEQAIRL 406
           + A  +HG  E   R+
Sbjct: 469 LGACRKHGDVELGERV 484



 Score = 87.0 bits (214), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 82/409 (20%), Positives = 156/409 (38%), Gaps = 102/409 (24%)

Query: 205 RQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKL 264
           +QVH   L TG   +  +S ++V  YA                                 
Sbjct: 47  KQVHAVALRTGHFQDHYVSGTLVKCYAN-----------------------------PHF 77

Query: 265 GDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCL 324
            ++  A K+F  +P  N   +  +I G  +N    KA+  + +MMI   RPN+ T+ +  
Sbjct: 78  SNLNFALKVFEYVPNPNVFVFNIIIKGCLQNNEPCKAICCYYKMMIAHARPNKFTYPTLF 137

Query: 325 CACASIVSLKHGKQVHGFLIRTNF-------------------------------RSNTI 353
            AC +  + + G QVH  +I+                                   S+ I
Sbjct: 138 KACTAAEAAEEGVQVHAHVIKQGLSGDVHIRSAGIQMYGSFGEVEGARRMLGEDGNSDVI 197

Query: 354 VMSSLIDMYSKCGCLNDGRQVFDLTDNK------------------------------EN 383
             +++ID Y KCG +   +++F   ++K                              +N
Sbjct: 198 CFNAMIDGYLKCGEVEAAKELFWSMEDKNVGSWNVMVSGMAKCGMIEEARELFNEMKEKN 257

Query: 384 SMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGL---T 440
            + W+ MI    + GY ++A+ +F+ M R  ++P K  L+ +L AC + G + +G     
Sbjct: 258 EISWSAMIDGYIKGGYYKEALEVFNVMQREEIRPRKFVLSSVLAACANLGALDQGRWIHA 317

Query: 441 YFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIH 500
           Y  + ++    +        L+++ A+ G  D   +  EKM  + + + WNA+     +H
Sbjct: 318 YVNNNSNSFDAVLG----TALVDMYAKCGRLDMAWDVFEKME-KKEVFTWNAMICGLGMH 372

Query: 501 GNIDMGRKVVDQLIDQNPQSSATHGL-LSSIYSALGKGRLVEKVRQLIN 548
           G  +     ++       Q    +G+ L  + SA     +V++  ++ N
Sbjct: 373 GRAE---DAIELFFKMQKQKFRPNGITLLGVLSACAHSGMVDEGLRIFN 418



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 42/150 (28%), Positives = 70/150 (46%), Gaps = 5/150 (3%)

Query: 28  ISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPT 87
           I  G   EA+   +++ +  IR     L+ +L  CA   +L  G+ +H ++      +  
Sbjct: 269 IKGGYYKEALEVFNVMQREEIRPRKFVLSSVLAACANLGALDQGRWIHAYVN-NNSNSFD 327

Query: 88  TFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAE 147
             L   L+ MY KCG    A  VF+K+  K +F++N M+ G    G  + A  LF  M +
Sbjct: 328 AVLGTALVDMYAKCGRLDMAWDVFEKMEKKEVFTWNAMICGLGMHGRAEDAIELFFKMQK 387

Query: 148 RDVVSWNTMIIGY----AKSGAVEEGLKFY 173
           +        ++G     A SG V+EGL+ +
Sbjct: 388 QKFRPNGITLLGVLSACAHSGMVDEGLRIF 417



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 65/277 (23%), Positives = 119/277 (42%), Gaps = 25/277 (9%)

Query: 329 SIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSK--CGCLNDGRQVFDLTDNKENSML 386
           S  SL H KQVH   +RT    +  V  +L+  Y+      LN   +VF+   N  N  +
Sbjct: 39  SSTSLHHLKQVHAVALRTGHFQDHYVSGTLVKCYANPHFSNLNFALKVFEYVPNP-NVFV 97

Query: 387 WNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMT 446
           +N +I    Q+    +AI  ++ M+ +  +P+K T   +  ACT +   +EG+     + 
Sbjct: 98  FNIIIKGCLQNNEPCKAICCYYKMMIAHARPNKFTYPTLFKACTAAEAAEEGVQVHAHVI 157

Query: 447 HDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMG 506
              G+  +    +  I++    G  +     L +     D   +NA+       G ++  
Sbjct: 158 KQ-GLSGDVHIRSAGIQMYGSFGEVEGARRMLGE-DGNSDVICFNAMIDGYLKCGEVEAA 215

Query: 507 RKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEI--- 563
           +++   + D+N       G  + + S + K  ++E+ R+L NE + K E  ISW  +   
Sbjct: 216 KELFWSMEDKNV------GSWNVMVSGMAKCGMIEEARELFNEMKEKNE--ISWSAMIDG 267

Query: 564 -------ENKVHAFSV--SDSLHPMRDVLYSVLEQLA 591
                  +  +  F+V   + + P + VL SVL   A
Sbjct: 268 YIKGGYYKEALEVFNVMQREEIRPRKFVLSSVLAACA 304


>gi|413943774|gb|AFW76423.1| hypothetical protein ZEAMMB73_944105 [Zea mays]
          Length = 446

 Score =  302 bits (773), Expect = 4e-79,   Method: Compositional matrix adjust.
 Identities = 150/418 (35%), Positives = 258/418 (61%), Gaps = 8/418 (1%)

Query: 184 NEFSFAGILTICVKLEELKLTRQVHGQVLVTGFL-SNVVISSSIVDAYAKCGELSDARRL 242
           +E + + +++ C  L   +  RQVH  ++    L  ++V+++++VD YAKCG   +AR +
Sbjct: 9   DEVTLSSVMSACAGLAAEREGRQVHAHMVKRDRLRDDMVLNNALVDMYAKCGRTWEARCI 68

Query: 243 FDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKAL 302
           FD   +R V++ T++++GYAK  ++E A  +F++M EKN ++W  LIA Y +NG  ++A+
Sbjct: 69  FDSMPSRSVVSETSILAGYAKSANVEDAQVVFSQMVEKNVIAWNVLIAAYAQNGEEEEAI 128

Query: 303 ELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFR------SNTIVMS 356
            LF ++    I P  +T+ + L AC +I  L+ G+Q H  +++  FR      S+  V +
Sbjct: 129 RLFVQLKRDSIWPTHYTYGNVLNACGNIAVLQLGQQAHVHVLKEGFRFDFGPESDVFVGN 188

Query: 357 SLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVK 416
           SL+DMY K G ++DG +VF+    ++N + WN MI    Q+G  + A+ LF  M+ S+  
Sbjct: 189 SLVDMYLKTGSIDDGAKVFERMAARDN-VSWNAMIVGYAQNGRAKDALHLFERMLCSNEN 247

Query: 417 PDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMN 476
           PD +T+  +L+AC HSGLV EG  +F  MT D GI P+++H+ C+++LL +AG   +   
Sbjct: 248 PDSVTMIGVLSACGHSGLVDEGRRHFHFMTEDHGITPSRDHYTCMVDLLGRAGHLKEAEE 307

Query: 477 QLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGK 536
            ++ MP E DS LW +L G CR+H N+++G +   +L + +P++S  + LLS++Y+ +GK
Sbjct: 308 LIKDMPTEPDSVLWASLLGACRLHKNVELGERTAGRLFELDPENSGPYVLLSNMYAEMGK 367

Query: 537 GRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQM 594
              V +VR+ + +R   K+   SWIEI +K++ F   D+ HP R+ ++S L  +  +M
Sbjct: 368 WADVFRVRRSMKDRGVSKQPGCSWIEIGSKMNVFLARDNRHPCRNEIHSTLRIIQMEM 425



 Score =  167 bits (423), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 100/359 (27%), Positives = 173/359 (48%), Gaps = 45/359 (12%)

Query: 50  LPAE-TLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDAR 108
            P E TL+ ++  CA   + + G++VH H+    R      L+N L+ MY KCG   +AR
Sbjct: 7   FPDEVTLSSVMSACAGLAAEREGRQVHAHMVKRDRLRDDMVLNNALVDMYAKCGRTWEAR 66

Query: 109 KVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEE 168
            +FD +P +++ S  ++L+GYA    ++ A+ +F  M E++V++WN +I  YA++G  EE
Sbjct: 67  CIFDSMPSRSVVSETSILAGYAKSANVEDAQVVFSQMVEKNVIAWNVLIAAYAQNGEEEE 126

Query: 169 GLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFL------SNVVI 222
            ++ +  L+R SI    +++  +L  C  +  L+L +Q H  VL  GF       S+V +
Sbjct: 127 AIRLFVQLKRDSIWPTHYTYGNVLNACGNIAVLQLGQQAHVHVLKEGFRFDFGPESDVFV 186

Query: 223 SSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNP 282
            +S+VD Y K G + D  ++F+   ARD ++W  M+ GYA+                   
Sbjct: 187 GNSLVDMYLKTGSIDDGAKVFERMAARDNVSWNAMIVGYAQ------------------- 227

Query: 283 VSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGF 342
                       NG  + AL LF RM+     P+  T    L AC     +  G++   F
Sbjct: 228 ------------NGRAKDALHLFERMLCSNENPDSVTMIGVLSACGHSGLVDEGRRHFHF 275

Query: 343 LIR----TNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQH 397
           +      T  R +   M   +D+  + G L +  ++      + +S+LW +++ A   H
Sbjct: 276 MTEDHGITPSRDHYTCM---VDLLGRAGHLKEAEELIKDMPTEPDSVLWASLLGACRLH 331



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 72/276 (26%), Positives = 125/276 (45%), Gaps = 43/276 (15%)

Query: 308 MMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLI-RTNFRSNTIVMSSLIDMYSKCG 366
           MM     P++ T SS + ACA + + + G+QVH  ++ R   R + ++ ++L+DMY+KCG
Sbjct: 1   MMATGFFPDEVTLSSVMSACAGLAAEREGRQVHAHMVKRDRLRDDMVLNNALVDMYAKCG 60

Query: 367 CLNDGRQVFDLTDNK------------------------------ENSMLWNTMISALTQ 396
              + R +FD   ++                              +N + WN +I+A  Q
Sbjct: 61  RTWEARCIFDSMPSRSVVSETSILAGYAKSANVEDAQVVFSQMVEKNVIAWNVLIAAYAQ 120

Query: 397 HGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYF-----ESMTHDLGI 451
           +G +E+AIRLF  + R S+ P   T   +LNAC +  ++Q G         E    D G 
Sbjct: 121 NGEEEEAIRLFVQLKRDSIWPTHYTYGNVLNACGNIAVLQLGQQAHVHVLKEGFRFDFGP 180

Query: 452 IPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVD 511
             +      L+++  + G  D      E+M    D+  WNA+      +G       + +
Sbjct: 181 ESDVFVGNSLVDMYLKTGSIDDGAKVFERMA-ARDNVSWNAMIVGYAQNGRAKDALHLFE 239

Query: 512 QLI--DQNPQSSATHGLLSSIYSALGKGRLVEKVRQ 545
           +++  ++NP S    G+L    SA G   LV++ R+
Sbjct: 240 RMLCSNENPDSVTMIGVL----SACGHSGLVDEGRR 271



 Score = 68.6 bits (166), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 64/273 (23%), Positives = 115/273 (42%), Gaps = 41/273 (15%)

Query: 18  NCLIQSFLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLH 77
           N LI ++      G+  EAI     L +  I     T   +L  C     L+LG++ H+H
Sbjct: 112 NVLIAAY---AQNGEEEEAIRLFVQLKRDSIWPTHYTYGNVLNACGNIAVLQLGQQAHVH 168

Query: 78  LKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKH 137
           +                +   F+          FD  P  ++F  N+++  Y   G +  
Sbjct: 169 V----------------LKEGFR----------FDFGPESDVFVGNSLVDMYLKTGSIDD 202

Query: 138 ARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVK 197
              +F+ MA RD VSWN MI+GYA++G  ++ L  ++ +   + + +  +  G+L+ C  
Sbjct: 203 GAKVFERMAARDNVSWNAMIVGYAQNGRAKDALHLFERMLCSNENPDSVTMIGVLSACGH 262

Query: 198 ---LEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLF-DETDARDVLT 253
              ++E +  R  H      G   +    + +VD   + G L +A  L  D     D + 
Sbjct: 263 SGLVDEGR--RHFHFMTEDHGITPSRDHYTCMVDLLGRAGHLKEAEELIKDMPTEPDSVL 320

Query: 254 WTTMVSG-----YAKLGDMESASKLFNEMPEKN 281
           W +++         +LG+  +A +LF   PE +
Sbjct: 321 WASLLGACRLHKNVELGE-RTAGRLFELDPENS 352


>gi|147834283|emb|CAN67492.1| hypothetical protein VITISV_035978 [Vitis vinifera]
          Length = 814

 Score =  302 bits (773), Expect = 4e-79,   Method: Compositional matrix adjust.
 Identities = 170/585 (29%), Positives = 302/585 (51%), Gaps = 69/585 (11%)

Query: 14  NLPNNCLIQSFLSLISKGQLS----EAISSLDLLAQRGIRLPAETLAFILQQCAESKSLK 69
           +LPN+ L QS+ ++I     S    EA+    LL + G+ L   +L+   + CA  K   
Sbjct: 272 SLPNHNL-QSYNAIIVGYARSDKGIEALGMFRLLQKSGLGLDEVSLSGAXRACAVIKGDL 330

Query: 70  LGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGY 129
            G +VH  L +         ++N ++ MY KCG+ V+A  V                   
Sbjct: 331 EGLQVH-GLSMKSLCQSNICVANAILDMYGKCGALVEACLV------------------- 370

Query: 130 ANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFA 189
                       F+ M  RD VSWN +I  + ++G  E+ L  +  + +  +  +EF++ 
Sbjct: 371 ------------FEEMVSRDAVSWNAIIAAHEQNGNEEKTLSLFVWMLQSGMEPDEFTYG 418

Query: 190 GILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDAR 249
            +L  C   + L    ++H +++ +    +  +  +++D Y+KCG               
Sbjct: 419 SVLKACAGWQALNCGMEIHNRIIKSRMGLDSFVGIALIDMYSKCGM-------------- 464

Query: 250 DVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMM 309
                            ME A KL + + E+  VSW  +I+G++     ++A + F++M+
Sbjct: 465 -----------------MEKAEKLHDRLAEQTVVSWNAIISGFSLQKQSEEAQKTFSKML 507

Query: 310 ILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLN 369
            + + P+  T+++ L  CA++V+++ GKQ+H  +I+   +S+  + S+L+DMYSKCG + 
Sbjct: 508 EMGVDPDNFTYATILDTCANLVTVELGKQIHAQIIKKELQSDAYISSTLVDMYSKCGNMQ 567

Query: 370 DGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNAC 429
           D + +F+   N++  + WN M+    QHG  E+A+++F  M   +VKP+  T   +L AC
Sbjct: 568 DFQLIFEKAPNRD-FVTWNAMVCGYAQHGLGEEALKIFEYMQLENVKPNHATFLAVLRAC 626

Query: 430 THSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYL 489
            H GLV++GL YF SM  + G+ P  EH++C+++++ ++G   + +  +E MP+E D+ +
Sbjct: 627 GHMGLVEKGLHYFHSMLSNYGLDPQLEHYSCVVDIMGRSGQVSKALELIEGMPFEADAVI 686

Query: 490 WNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINE 549
           W  L   C+IHGN+++  K    ++   P+ SA + LLS+IY+  G    V K+R+++  
Sbjct: 687 WRTLLSXCKIHGNVEVAEKAAYSILQLEPEDSAAYVLLSNIYANAGMWNEVTKLRKMMRF 746

Query: 550 RQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQM 594
              KKE   SWIEI+++VHAF V D  HP    +Y  L+ L  +M
Sbjct: 747 NGLKKEPGCSWIEIKSEVHAFLVGDKAHPRSKEIYENLDVLTDEM 791



 Score =  188 bits (477), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 159/565 (28%), Positives = 264/565 (46%), Gaps = 80/565 (14%)

Query: 53  ETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFD 112
           +T + I Q+C++ K+L  GK+ H  + LT+ K PT F++N LI MY KC     A KVFD
Sbjct: 43  KTFSHIFQECSDRKALCPGKQAHARMILTEFK-PTVFVTNCLIQMYIKCSDLGFAFKVFD 101

Query: 113 KIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKF 172
            +P ++  S+N ML GYA  G +  A+ LFD M                  G VE    F
Sbjct: 102 GMPQRDTVSWNAMLFGYAGRGDIGVAQKLFDAMPG-------------TGCGVVE---LF 145

Query: 173 YKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAK 232
              + R     +  +FA +L  C  LE+     Q+HG  +  GF  +VV  S+++D YAK
Sbjct: 146 DFRMGRMGTVFDRTTFAVVLKSCSSLEDHGGGIQIHGLAVKMGFDCDVVTGSALLDMYAK 205

Query: 233 CGELSDARR----LFDE-----------------TD-ARDVLTWTTMVSGYAKLGDMESA 270
           C   +D  R    LF E                 TD   DV+  T  +  Y K  ++   
Sbjct: 206 CCVQNDDLRGGLELFKEMQKAGVGALQLHGHALKTDFGTDVVIGTATLDMYMKCNNLSDC 265

Query: 271 S-KLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACAS 329
           S +LFN +P  N  S+  +I GY R+  G +AL +F  +    +  ++ + S    ACA 
Sbjct: 266 SNQLFNSLPNHNLQSYNAIIVGYARSDKGIEALGMFRLLQKSGLGLDEVSLSGAXRACAV 325

Query: 330 IVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNT 389
           I     G QVHG  +++  +SN  V ++++DMY KCG L +   VF+   +++ ++ WN 
Sbjct: 326 IKGDLEGLQVHGLSMKSLCQSNICVANAILDMYGKCGALVEACLVFEEMVSRD-AVSWNA 384

Query: 390 MISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACT-----------HSGLVQE- 437
           +I+A  Q+G +E+ + LF  M++S ++PD+ T   +L AC            H+ +++  
Sbjct: 385 IIAAHEQNGNEEKTLSLFVWMLQSGMEPDEFTYGSVLKACAGWQALNCGMEIHNRIIKSR 444

Query: 438 -GLTYFES-----MTHDLGIIPNQEH-HACLIE--------------LLAQAGCSDQLMN 476
            GL  F       M    G++   E  H  L E              L  Q+  + +  +
Sbjct: 445 MGLDSFVGIALIDMYSKCGMMEKAEKLHDRLAEQTVVSWNAIISGFSLQKQSEEAQKTFS 504

Query: 477 QLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSA-THGLLSSIYSALG 535
           ++ +M  + D++ +  +   C     +++G+++  Q+I +  QS A     L  +YS  G
Sbjct: 505 KMLEMGVDPDNFTYATILDTCANLVTVELGKQIHAQIIKKELQSDAYISSTLVDMYSKCG 564

Query: 536 KGRLVEKVRQLINERQFKKEQAISW 560
             +  + + +    R F     ++W
Sbjct: 565 NMQDFQLIFEKAPNRDF-----VTW 584


>gi|326507322|dbj|BAJ95738.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 593

 Score =  302 bits (773), Expect = 4e-79,   Method: Compositional matrix adjust.
 Identities = 177/585 (30%), Positives = 291/585 (49%), Gaps = 51/585 (8%)

Query: 16  PNNCLIQSFLSLISKGQLSEAISSLDLLA------QRGIRLPAETLAFILQQCAESKSLK 69
           P   L  +FLS      LS A S  DLL       ++G  +P+  +  + + CA + S  
Sbjct: 33  PAPALCSTFLS-----SLSRASSHHDLLQTFSSMHRKGAYVPSGCVPLVFKSCALTASSC 87

Query: 70  LGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGY 129
            G++VH H  L +      F+   L+  Y K G    A   FD++PVK+    N +++GY
Sbjct: 88  QGRQVHCH-ALVRGLLGDVFVLTALVDFYAKNGDMESAVSAFDEMPVKDPIPINCLITGY 146

Query: 130 ANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFA 189
           +  G +  AR LFD M  R   SWN+MI  YA  G   E L  +                
Sbjct: 147 SKAGDVDKARRLFDGMERRTSASWNSMIACYAHGGEFREALALFD--------------- 191

Query: 190 GILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFD---ET 246
                               ++L  G   N +  +S+    AK G+L   +R+ D   E 
Sbjct: 192 --------------------RMLSEGARPNAITITSVFSICAKSGDLDTGKRVRDLIGED 231

Query: 247 DARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFT 306
           D ++V+  T ++  Y K   ++ A + F+ M +++ V+W+T+IAGY +NG   ++LELF 
Sbjct: 232 DLQNVIVHTALMEMYVKCRAIDDARREFDRMSQRDVVAWSTMIAGYAQNGRPLESLELFE 291

Query: 307 RMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCG 366
           RM     RPN+ T    + ACA + S +  +Q+  +         + + S+LIDMY++CG
Sbjct: 292 RMKATDCRPNEVTLVGVISACAQLGSDELVEQIGNYAENQRLPLTSYLGSALIDMYTRCG 351

Query: 367 CLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVIL 426
            +   R VF   + K   + WN+MI  L  +G+ E AI L+  M  + V+P++IT   +L
Sbjct: 352 HVGRARSVFSRMEQK-GVITWNSMIRGLAMNGFAEDAISLYEKMAENGVQPNEITFVALL 410

Query: 427 NACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHD 486
            ACTH+GLV +G+ +FE M  +  + P  EH AC+++LL ++G   +    +  M  E +
Sbjct: 411 AACTHAGLVDQGMAFFEEMKREHLVSPQVEHCACIVDLLCKSGGLWEAYKFICDMEVEPN 470

Query: 487 SYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQL 546
           + +W  L   CR H ++++ +    +L+   P +S+ + LLS+IY+  G      ++R L
Sbjct: 471 AVIWTTLLSSCRAHADVELAKLASRKLLAMEPDNSSIYVLLSNIYADAGLWGDAREIRDL 530

Query: 547 INERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLA 591
           +  +  +K  A SWI+++ +VH F V D+ HP    +Y V+  L 
Sbjct: 531 MRSKNVQKLSAYSWIKLDGEVHKFLVQDTYHPRSAEIYDVIHGLG 575


>gi|356557757|ref|XP_003547177.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
            chloroplastic-like [Glycine max]
          Length = 1227

 Score =  302 bits (773), Expect = 4e-79,   Method: Compositional matrix adjust.
 Identities = 173/548 (31%), Positives = 278/548 (50%), Gaps = 72/548 (13%)

Query: 123  NNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSIS 182
            N++++ Y   G +  A  LFD + +RDVVSWN+MI G   +G     L+F+  +    + 
Sbjct: 592  NSLIATYFKSGEVDSAHKLFDELGDRDVVSWNSMISGCVMNGFSHSALEFFVQMLILRVG 651

Query: 183  CNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSD---- 238
             +  +    +  C  +  L L R +HGQ +   F   V+ +++++D Y+KCG L+D    
Sbjct: 652  VDLATLVNSVAACANVGSLSLGRALHGQGVKACFSREVMFNNTLLDMYSKCGNLNDAIQA 711

Query: 239  ---------------------------ARRLFDETDAR----DVLTWTTMVSG------- 260
                                       A RLF E +++    DV + T+++         
Sbjct: 712  FEKMGQKTVVSWTSLIAAYVREGLYDDAIRLFYEMESKGVSPDVYSMTSVLHACACGNSL 771

Query: 261  ----------------------------YAKLGDMESASKLFNEMPEKNPVSWTTLIAGY 292
                                        YAK G ME A  +F+++P K+ VSW T+I GY
Sbjct: 772  DKGRDVHNYIRKNNMALCLPVSNALMDMYAKCGSMEEAYLVFSQIPVKDIVSWNTMIGGY 831

Query: 293  TRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNT 352
            ++N L  +AL+LF  M     RP+  T +  L AC S+ +L+ G+ +HG ++R  + S  
Sbjct: 832  SKNSLPNEALKLFAEMQ-KESRPDGITMACLLPACGSLAALEIGRGIHGCILRNGYSSEL 890

Query: 353  IVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVR 412
             V ++LIDMY KCG L   R +FD+   K+  + W  MIS    HG   +AI  F  M  
Sbjct: 891  HVANALIDMYVKCGSLVHARLLFDMIPEKD-LITWTVMISGCGMHGLGNEAIATFQKMRI 949

Query: 413  SSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSD 472
            + +KPD+IT   IL AC+HSGL+ EG  +F SM  +  + P  EH+AC+++LLA+ G   
Sbjct: 950  AGIKPDEITFTSILYACSHSGLLNEGWGFFNSMISECNMEPKLEHYACMVDLLARTGNLS 1009

Query: 473  QLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYS 532
            +  N +E MP + D+ +W AL   CRIH ++++  KV + + +  P ++  + LL++IY+
Sbjct: 1010 KAYNLIETMPIKPDATIWGALLCGCRIHHDVELAEKVAEHVFELEPDNAGYYVLLANIYA 1069

Query: 533  ALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAG 592
               K   V+K+R+ I +R  KK    SWIE++ K   F  +D+ HP    ++S+L  L  
Sbjct: 1070 EAEKWEEVKKLRERIGKRGLKKSPGCSWIEVQGKFTTFVSADTAHPQAKSIFSLLNNLRI 1129

Query: 593  QMGEDAPS 600
            +M  +  S
Sbjct: 1130 KMKNEGHS 1137



 Score =  174 bits (441), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 118/411 (28%), Positives = 196/411 (47%), Gaps = 71/411 (17%)

Query: 31  GQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTT-F 89
           G L  A+  L +  +  + L A   + ILQ CAE K L+ GK VH    ++    P    
Sbjct: 432 GDLRNAVELLRMSQKSELDLNA--YSSILQLCAEHKCLQEGKMVHS--VISSNGIPIEGV 487

Query: 90  LSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDN-MAER 148
           L   L+ MY  CG+                               ++  R +FD+ +++ 
Sbjct: 488 LGAKLVFMYVSCGA-------------------------------LREGRRIFDHILSDN 516

Query: 149 DVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVH 208
            V  WN M+  YAK G   E +  +K +++  I+ N ++F+ IL     L  +   +++H
Sbjct: 517 KVFLWNLMMSEYAKIGDYRESIYLFKKMQKLGITGNSYTFSCILKCFATLGRVGECKRIH 576

Query: 209 GQVLVTGFLS-NVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDM 267
           G V   GF S N V++S                                +++ Y K G++
Sbjct: 577 GCVYKLGFGSYNTVVNS--------------------------------LIATYFKSGEV 604

Query: 268 ESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCAC 327
           +SA KLF+E+ +++ VSW ++I+G   NG    ALE F +M+ILR+  +  T  + + AC
Sbjct: 605 DSAHKLFDELGDRDVVSWNSMISGCVMNGFSHSALEFFVQMLILRVGVDLATLVNSVAAC 664

Query: 328 ASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLW 387
           A++ SL  G+ +HG  ++  F    +  ++L+DMYSKCG LND  Q F+    K   + W
Sbjct: 665 ANVGSLSLGRALHGQGVKACFSREVMFNNTLLDMYSKCGNLNDAIQAFEKMGQK-TVVSW 723

Query: 388 NTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEG 438
            ++I+A  + G  + AIRLF++M    V PD  ++  +L+AC     + +G
Sbjct: 724 TSLIAAYVREGLYDDAIRLFYEMESKGVSPDVYSMTSVLHACACGNSLDKG 774



 Score =  131 bits (330), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 103/411 (25%), Positives = 176/411 (42%), Gaps = 71/411 (17%)

Query: 21   IQSFLSLIS----KGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHL 76
            + S+ SLI+    +G   +AI     +  +G+     ++  +L  CA   SL  G+ VH 
Sbjct: 720  VVSWTSLIAAYVREGLYDDAIRLFYEMESKGVSPDVYSMTSVLHACACGNSLDKGRDVHN 779

Query: 77   HLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMK 136
            +++          +SN L+ MY KCGS  +A  VF +IPVK++ S+N M+ GY+   +  
Sbjct: 780  YIRKNNMALCLP-VSNALMDMYAKCGSMEEAYLVFSQIPVKDIVSWNTMIGGYSKNSLPN 838

Query: 137  HARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICV 196
             A  LF  M +       TM                                A +L  C 
Sbjct: 839  EALKLFAEMQKESRPDGITM--------------------------------ACLLPACG 866

Query: 197  KLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTT 256
             L  L++ R +HG +L  G+ S + ++++++D Y KCG L  AR LFD    +D++TWT 
Sbjct: 867  SLAALEIGRGIHGCILRNGYSSELHVANALIDMYVKCGSLVHARLLFDMIPEKDLITWTV 926

Query: 257  MVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPN 316
            M+SG                                  +GLG +A+  F +M I  I+P+
Sbjct: 927  MISGCG-------------------------------MHGLGNEAIATFQKMRIAGIKPD 955

Query: 317  QHTFSSCLCACASIVSLKHGKQVHGFLI-RTNFRSNTIVMSSLIDMYSKCGCLNDGRQVF 375
            + TF+S L AC+    L  G      +I   N        + ++D+ ++ G L+    + 
Sbjct: 956  EITFTSILYACSHSGLLNEGWGFFNSMISECNMEPKLEHYACMVDLLARTGNLSKAYNLI 1015

Query: 376  DLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVIL 426
            +    K ++ +W  ++     H   E A ++   +    ++PD     V+L
Sbjct: 1016 ETMPIKPDATIWGALLCGCRIHHDVELAEKVAEHVFE--LEPDNAGYYVLL 1064



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 58/217 (26%), Positives = 94/217 (43%), Gaps = 8/217 (3%)

Query: 287 TLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRT 346
           T I  +   G  + A+EL    M  +   + + +SS L  CA    L+ GK VH  +   
Sbjct: 423 TKICKFCEVGDLRNAVELLR--MSQKSELDLNAYSSILQLCAEHKCLQEGKMVHSVISSN 480

Query: 347 NFRSNTIVMSSLIDMYSKCGCLNDGRQVFD--LTDNKENSMLWNTMISALTQHGYDEQAI 404
                 ++ + L+ MY  CG L +GR++FD  L+DNK    LWN M+S   + G   ++I
Sbjct: 481 GIPIEGVLGAKLVFMYVSCGALREGRRIFDHILSDNK--VFLWNLMMSEYAKIGDYRESI 538

Query: 405 RLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIEL 464
            LF  M +  +  +  T + IL      G V E         + LG          LI  
Sbjct: 539 YLFKKMQKLGITGNSYTFSCILKCFATLGRVGE-CKRIHGCVYKLGFGSYNTVVNSLIAT 597

Query: 465 LAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHG 501
             ++G  D      +++  + D   WN++   C ++G
Sbjct: 598 YFKSGEVDSAHKLFDELG-DRDVVSWNSMISGCVMNG 633


>gi|124360491|gb|ABN08501.1| Tetratricopeptide-like helical [Medicago truncatula]
          Length = 575

 Score =  302 bits (773), Expect = 4e-79,   Method: Compositional matrix adjust.
 Identities = 162/485 (33%), Positives = 281/485 (57%), Gaps = 23/485 (4%)

Query: 92  NHLISMYFKCGSDVDARKVF----DKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAE 147
           N +IS Y+KCG++ +A  +F    D+   +N+ ++  M++G+A  G +K AR  FD M E
Sbjct: 97  NVMISGYWKCGNEEEASTLFHVMGDQEISRNVITWTTMITGHAKKGNLKTARMYFDKMPE 156

Query: 148 RDVVSWNTMIIGYAKSGAVEEGLK-FYKVLRRFSISCNEFSFAGILTICVKLEELKLT-- 204
           R VVSWN M+ GYA+ GA EE ++ F  +L   ++  +E ++A +++ C  L +  L+  
Sbjct: 157 RSVVSWNAMLSGYAQGGAPEETIRLFNDMLSPGNVQPDETTWATVISSCSSLGDPCLSES 216

Query: 205 --RQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDA---RDVLTWTTMVS 259
             R++  +V   GF  N  + ++++D +AKCG L  A ++F++      R  + W  M+S
Sbjct: 217 IVRKLDDKV---GFRPNYFVKTALLDMHAKCGNLEAAHKIFEQLGVYKYRSSVPWNAMIS 273

Query: 260 GYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRI--RPNQ 317
            YA++GD+ SA  LF++MP+++ VSW ++IAGYT+NG   KA++LF  M+      +P++
Sbjct: 274 AYARVGDLPSAKHLFDKMPQRDTVSWNSMIAGYTQNGESFKAIKLFEEMISSEDSRKPDE 333

Query: 318 HTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDL 377
            T  S   AC  +  L  G      L   + + +  V +SLI+MYS+CG + D   +F  
Sbjct: 334 VTMVSVFSACGHLGELGLGNWAVSILKVNHIQISISVYNSLINMYSRCGSMQDAVLIFQE 393

Query: 378 TDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQE 437
              ++  + +NT+IS   +HG+  ++I L   M    ++PD+IT   IL AC+H+GL+ E
Sbjct: 394 MATRD-LVSYNTLISGFAEHGHGMESIELLSKMKEDGIEPDRITYIAILTACSHAGLLDE 452

Query: 438 GLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVC 497
           G   FES+       P+ +H+AC+I++L +AG  ++ M  ++ MP E  + ++ +L    
Sbjct: 453 GQRLFESIK-----FPDVDHYACMIDMLGRAGRLEEAMKLIQSMPMEPHAGIYGSLLNAT 507

Query: 498 RIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQA 557
            IH  +++G     +L    P +S  + LLS+IY++ G+ +  +KVR  + ++  KK   
Sbjct: 508 SIHKQVELGELAAAKLFKVEPHNSGNYALLSNIYASAGRWKEGDKVRDTMRKQGVKKTTG 567

Query: 558 ISWIE 562
           +SW+E
Sbjct: 568 LSWLE 572



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 82/297 (27%), Positives = 139/297 (46%), Gaps = 72/297 (24%)

Query: 209 GQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDME 268
             VL +G+  +  + + I+  YAK G +  AR+LFDE   R V  W  M+SGY K G+ E
Sbjct: 51  AHVLKSGYDRDHYVRNGILGIYAKYGPIEFARKLFDEMPDRTVADWNVMISGYWKCGNEE 110

Query: 269 SASKL-----------------------------------FNEMPEKNPVSWTTLIAGYT 293
            AS L                                   F++MPE++ VSW  +++GY 
Sbjct: 111 EASTLFHVMGDQEISRNVITWTTMITGHAKKGNLKTARMYFDKMPERSVVSWNAMLSGYA 170

Query: 294 RNGLGQKALELFTRMMIL-RIRPNQHTFSSCLCACASIVSLKHGKQ-VHGFLIRTNFRSN 351
           + G  ++ + LF  M+    ++P++ T+++ + +C+S+      +  V     +  FR N
Sbjct: 171 QGGAPEETIRLFNDMLSPGNVQPDETTWATVISSCSSLGDPCLSESIVRKLDDKVGFRPN 230

Query: 352 TIVMSSLIDMYSKCGCLNDGRQVF-------------------------DLTDNK----- 381
             V ++L+DM++KCG L    ++F                         DL   K     
Sbjct: 231 YFVKTALLDMHAKCGNLEAAHKIFEQLGVYKYRSSVPWNAMISAYARVGDLPSAKHLFDK 290

Query: 382 ---ENSMLWNTMISALTQHGYDEQAIRLFHDMVRS--SVKPDKITLAVILNACTHSG 433
               +++ WN+MI+  TQ+G   +AI+LF +M+ S  S KPD++T+  + +AC H G
Sbjct: 291 MPQRDTVSWNSMIAGYTQNGESFKAIKLFEEMISSEDSRKPDEVTMVSVFSACGHLG 347



 Score =  125 bits (315), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 101/438 (23%), Positives = 203/438 (46%), Gaps = 55/438 (12%)

Query: 15  LPNNCLI--QSFLSLISKGQLSEAISSL--DLLAQRGIRLPAETLAFILQQCAESKSLKL 70
           +P   ++   + LS  ++G   E    L  D+L+   ++    T A ++  C+      L
Sbjct: 154 MPERSVVSWNAMLSGYAQGGAPEETIRLFNDMLSPGNVQPDETTWATVISSCSSLGDPCL 213

Query: 71  GKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPV---KNLFSYNNMLS 127
            + +   L       P  F+   L+ M+ KCG+   A K+F+++ V   ++   +N M+S
Sbjct: 214 SESIVRKLDDKVGFRPNYFVKTALLDMHAKCGNLEAAHKIFEQLGVYKYRSSVPWNAMIS 273

Query: 128 GYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYK--VLRRFSISCNE 185
            YA +G +  A++LFD M +RD VSWN+MI GY ++G   + +K ++  +    S   +E
Sbjct: 274 AYARVGDLPSAKHLFDKMPQRDTVSWNSMIAGYTQNGESFKAIKLFEEMISSEDSRKPDE 333

Query: 186 FSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDE 245
            +   + + C  L EL L       + V     ++ + +S+++ Y++CG + DA  +F E
Sbjct: 334 VTMVSVFSACGHLGELGLGNWAVSILKVNHIQISISVYNSLINMYSRCGSMQDAVLIFQE 393

Query: 246 TDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELF 305
              RD++++ T++SG+A+                               +G G +++EL 
Sbjct: 394 MATRDLVSYNTLISGFAE-------------------------------HGHGMESIELL 422

Query: 306 TRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKC 365
           ++M    I P++ T+ + L AC+    L  G++    L  +    +    + +IDM  + 
Sbjct: 423 SKMKEDGIEPDRITYIAILTACSHAGLLDEGQR----LFESIKFPDVDHYACMIDMLGRA 478

Query: 366 GCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDE----QAIRLFHDMVRSSVKP-DKI 420
           G L +  ++      + ++ ++ ++++A + H   E     A +LF       V+P +  
Sbjct: 479 GRLEEAMKLIQSMPMEPHAGIYGSLLNATSIHKQVELGELAAAKLF------KVEPHNSG 532

Query: 421 TLAVILNACTHSGLVQEG 438
             A++ N    +G  +EG
Sbjct: 533 NYALLSNIYASAGRWKEG 550



 Score = 52.4 bits (124), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 50/233 (21%), Positives = 100/233 (42%), Gaps = 21/233 (9%)

Query: 292 YTRNGL-GQKALELFTRMMI-LRIRPNQHTFSSCL--CACASIVSLKHGKQVHGFLIRTN 347
           Y++ G+  Q  + LF  M+    I+PN   +S  +      S++ L H       ++++ 
Sbjct: 5   YSQIGVHSQVFVSLFKHMLQHCDIKPNASFYSVMMKSAGSESMLFLAH-------VLKSG 57

Query: 348 FRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLF 407
           +  +  V + ++ +Y+K G +   R++FD   ++  +  WN MIS   + G +E+A  LF
Sbjct: 58  YDRDHYVRNGILGIYAKYGPIEFARKLFDEMPDRTVAD-WNVMISGYWKCGNEEEASTLF 116

Query: 408 HDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQ 467
           H M    +  + IT   ++      G ++    YF+ M     +  N      ++   AQ
Sbjct: 117 HVMGDQEISRNVITWTTMITGHAKKGNLKTARMYFDKMPERSVVSWN-----AMLSGYAQ 171

Query: 468 AGCSDQLMNQLEKM----PYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQ 516
            G  ++ +     M      + D   W  +   C   G+  +   +V +L D+
Sbjct: 172 GGAPEETIRLFNDMLSPGNVQPDETTWATVISSCSSLGDPCLSESIVRKLDDK 224


>gi|75273443|sp|Q9LIQ7.1|PP252_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g24000, mitochondrial; Flags: Precursor
 gi|9294669|dbj|BAB03018.1| unnamed protein product [Arabidopsis thaliana]
          Length = 633

 Score =  302 bits (773), Expect = 4e-79,   Method: Compositional matrix adjust.
 Identities = 151/474 (31%), Positives = 261/474 (55%), Gaps = 33/474 (6%)

Query: 123 NNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSIS 182
           N +L+ YA  G ++ AR +F+ M +RD V+W T+I GY++     + L F+  + RF  S
Sbjct: 99  NTLLNMYAKCGSLEEARKVFEKMPQRDFVTWTTLISGYSQHDRPCDALLFFNQMLRFGYS 158

Query: 183 CNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRL 242
            NEF+ + ++             Q+HG  +  GF SNV + S+++D Y + G + DA+ +
Sbjct: 159 PNEFTLSSVIKAAAAERRGCCGHQLHGFCVKCGFDSNVHVGSALLDLYTRYGLMDDAQLV 218

Query: 243 FDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKAL 302
                                          F+ +  +N VSW  LIAG+ R    +KAL
Sbjct: 219 -------------------------------FDALESRNDVSWNALIAGHARRSGTEKAL 247

Query: 303 ELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMY 362
           ELF  M+    RP+  +++S   AC+S   L+ GK VH ++I++  +      ++L+DMY
Sbjct: 248 ELFQGMLRDGFRPSHFSYASLFGACSSTGFLEQGKWVHAYMIKSGEKLVAFAGNTLLDMY 307

Query: 363 SKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITL 422
           +K G ++D R++FD    K + + WN++++A  QHG+ ++A+  F +M R  ++P++I+ 
Sbjct: 308 AKSGSIHDARKIFDRL-AKRDVVSWNSLLTAYAQHGFGKEAVWWFEEMRRVGIRPNEISF 366

Query: 423 AVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMP 482
             +L AC+HSGL+ EG  Y+E M  D GI+P   H+  +++LL +AG  ++ +  +E+MP
Sbjct: 367 LSVLTACSHSGLLDEGWHYYELMKKD-GIVPEAWHYVTVVDLLGRAGDLNRALRFIEEMP 425

Query: 483 YEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEK 542
            E  + +W AL   CR+H N ++G    + + + +P     H +L +IY++ G+     +
Sbjct: 426 IEPTAAIWKALLNACRMHKNTELGAYAAEHVFELDPDDPGPHVILYNIYASGGRWNDAAR 485

Query: 543 VRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQMGE 596
           VR+ + E   KKE A SW+EIEN +H F  +D  HP R+ +    E++  ++ E
Sbjct: 486 VRKKMKESGVKKEPACSWVEIENAIHMFVANDERHPQREEIARKWEEVLAKIKE 539



 Score = 78.6 bits (192), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 41/126 (32%), Positives = 67/126 (53%)

Query: 120 FSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRF 179
           F+ N +L  YA  G +  AR +FD +A+RDVVSWN+++  YA+ G  +E + +++ +RR 
Sbjct: 298 FAGNTLLDMYAKSGSIHDARKIFDRLAKRDVVSWNSLLTAYAQHGFGKEAVWWFEEMRRV 357

Query: 180 SISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDA 239
            I  NE SF  +LT C     L      +  +   G +       ++VD   + G+L+ A
Sbjct: 358 GIRPNEISFLSVLTACSHSGLLDEGWHYYELMKKDGIVPEAWHYVTVVDLLGRAGDLNRA 417

Query: 240 RRLFDE 245
            R  +E
Sbjct: 418 LRFIEE 423



 Score = 72.4 bits (176), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 59/253 (23%), Positives = 121/253 (47%), Gaps = 14/253 (5%)

Query: 47  GIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVD 106
           G R    + A +   C+ +  L+ GK VH ++  +  K    F  N L+ MY K GS  D
Sbjct: 257 GFRPSHFSYASLFGACSSTGFLEQGKWVHAYMIKSGEKL-VAFAGNTLLDMYAKSGSIHD 315

Query: 107 ARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDV----VSWNTMIIGYAK 162
           ARK+FD++  +++ S+N++L+ YA  G  K A   F+ M    +    +S+ +++   + 
Sbjct: 316 ARKIFDRLAKRDVVSWNSLLTAYAQHGFGKEAVWWFEEMRRVGIRPNEISFLSVLTACSH 375

Query: 163 SGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLV--TGFLSNV 220
           SG ++EG  +Y+++++  I    + +  ++ +  +  +L    +   ++ +  T  +   
Sbjct: 376 SGLLDEGWHYYELMKKDGIVPEAWHYVTVVDLLGRAGDLNRALRFIEEMPIEPTAAIWKA 435

Query: 221 VISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPE- 279
           ++++  +    + G  + A  +F E D  D      + + YA  G    A+++  +M E 
Sbjct: 436 LLNACRMHKNTELGAYA-AEHVF-ELDPDDPGPHVILYNIYASGGRWNDAARVRKKMKES 493

Query: 280 ---KNPV-SWTTL 288
              K P  SW  +
Sbjct: 494 GVKKEPACSWVEI 506



 Score = 70.5 bits (171), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 33/118 (27%), Positives = 67/118 (56%), Gaps = 1/118 (0%)

Query: 313 IRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGR 372
           I  ++  +++ L  C     L  G+ VH  ++++ FR + ++ ++L++MY+KCG L + R
Sbjct: 56  IPADRRFYNTLLKKCTVFKLLIQGRIVHAHILQSIFRHDIVMGNTLLNMYAKCGSLEEAR 115

Query: 373 QVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACT 430
           +VF+    + + + W T+IS  +QH     A+  F+ M+R    P++ TL+ ++ A  
Sbjct: 116 KVFEKMPQR-DFVTWTTLISGYSQHDRPCDALLFFNQMLRFGYSPNEFTLSSVIKAAA 172


>gi|296085005|emb|CBI28420.3| unnamed protein product [Vitis vinifera]
          Length = 631

 Score =  302 bits (773), Expect = 4e-79,   Method: Compositional matrix adjust.
 Identities = 169/531 (31%), Positives = 294/531 (55%), Gaps = 20/531 (3%)

Query: 78  LKLTQRKTPTTFLSNHL-ISMYFKCGS--DVDARKVFD-KIPVKN-LFSYNNMLSGYAN- 131
           LKLT   +   +L ++L +S++  C +  +V+    F  K  + N  F  + +L+ Y++ 
Sbjct: 2   LKLTPFHSLQQYLPHNLHLSLFQTCSAPQEVEQLHAFSLKTAIFNHPFVSSRLLALYSDP 61

Query: 132 -LGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAG 190
            +  + +AR++FD +  R ++ WNT+I  Y ++    +G+  +  L    +  N F+   
Sbjct: 62  KINDLGYARSIFDRIQRRSLIHWNTIIKCYVENQFSHDGIVLFHELVHEYLPDN-FTLPC 120

Query: 191 ILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARD 250
           ++  C +L  ++  +Q+HG  L  GF S+V +  S+V+ Y+KCGE+  AR++FD    +D
Sbjct: 121 VIKGCARLGVVQEGKQIHGLALKIGFGSDVFVQGSLVNMYSKCGEIDCARKVFDGMIDKD 180

Query: 251 VL-----------TWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQ 299
           V+           +W  M++GY K GD +SA +LF +MP  + V+W  +IAGY  NG   
Sbjct: 181 VVLWNSLIDGNLVSWNAMINGYMKSGDFDSALELFYQMPIWDLVTWNLMIAGYELNGQFM 240

Query: 300 KALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLI 359
            A+++F  M+ L  RP+  T  S L A + +  L  G+ +H ++ +  F  + I+ +SLI
Sbjct: 241 DAVKMFFMMLKLGSRPSHATLVSVLSAVSGLAVLGKGRWIHSYMEKNGFELDGILGTSLI 300

Query: 360 DMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDK 419
           +MY+KCGC+     VF     K+    W  +I  L  HG    A+ LF +M ++ +KP+ 
Sbjct: 301 EMYAKCGCIESALTVFRAIQKKKVGH-WTAIIVGLGIHGMANHALALFLEMCKTGLKPNA 359

Query: 420 ITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLE 479
           I    +LNAC H+GLV +G  YF+ M ++  I P  EH+ CL+++L +AG  ++  N +E
Sbjct: 360 IIFIGVLNACNHAGLVDDGRQYFDMMMNEYKIEPTLEHYGCLVDILCRAGHLEEAKNTIE 419

Query: 480 KMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRL 539
            MP   +  +W +L G  R HG ID+G     ++I+  P++   + LLS++Y+A G    
Sbjct: 420 NMPISPNKVIWMSLLGGSRNHGKIDIGEYAAQRVIEVAPETIGCYILLSNMYAASGMWEK 479

Query: 540 VEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQL 590
           V  VR+++ +R F+K+   S +E +  +H F V D  HP    +Y+ + ++
Sbjct: 480 VSHVREMMYKRGFRKDPGCSSVEHKGTLHEFIVGDISHPQTKEIYAKMSEM 530


>gi|125547694|gb|EAY93516.1| hypothetical protein OsI_15309 [Oryza sativa Indica Group]
          Length = 613

 Score =  301 bits (772), Expect = 5e-79,   Method: Compositional matrix adjust.
 Identities = 179/528 (33%), Positives = 274/528 (51%), Gaps = 49/528 (9%)

Query: 81  TQRKTPTTFLSNHLISMYFKC-GSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHAR 139
           T RKT  T+  N L++ Y +  G   DAR +FD+IP  ++ SYN +L  +   G    AR
Sbjct: 43  TPRKTTATY--NCLLAGYARAPGRLADARHLFDRIPTPDVVSYNTLLLCHFASGDADGAR 100

Query: 140 NLFDNMAERDVVSWNTMIIGYAKSGAVEEG-LKFYKVLRRFSISCNEFSFAGILTICVKL 198
            LF +M  RDV SWNTM+ G +KSGAVEE  + F  +  R S+S N              
Sbjct: 101 RLFASMPVRDVASWNTMVSGLSKSGAVEEAKVVFLAMPVRNSVSWN-------------- 146

Query: 199 EELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLF-DETDARDVLTWTTM 257
                                     ++V  +A  G++S A   F +  +  D + WT M
Sbjct: 147 --------------------------AMVSGFACSGDMSTAEEWFRNAPEKEDAVLWTAM 180

Query: 258 VSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMI-LRIRPN 316
           VSGY  +G++  A K F  MP +N VSW  ++AGY +N     AL LF  M+    ++PN
Sbjct: 181 VSGYMDIGNVVKAIKYFEAMPVRNLVSWNAVVAGYVKNSHADDALRLFRTMVREANVQPN 240

Query: 317 QHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFD 376
             T SS L  C+++ +L  GKQ+H + ++     N  V +SL+ MY KCG L+    +F 
Sbjct: 241 ASTLSSVLLGCSNLSALGFGKQIHQWCMKLLLSRNLTVGTSLVSMYCKCGDLSSACILFG 300

Query: 377 LTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQ 436
               ++  + WN MIS   QHG  ++AI LF  M    V+P+ IT  V+L AC H+GL  
Sbjct: 301 EMHTRD-VVAWNAMISGYAQHGDGKEAINLFERMKDEGVEPNWITFVVVLTACIHTGLCD 359

Query: 437 EGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGV 496
            G+  FE M    GI P  +H++C+++LL +AG  ++ ++ +  MP+E     +  L   
Sbjct: 360 FGIQCFEGMQELYGIEPRVDHYSCMVDLLCRAGKLERAVDFIRSMPFEPHPSAYGTLLAA 419

Query: 497 CRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQ 556
           CR++ N++       +LI+++PQS+  +  L++IY+   +   V +VR+ + +    K  
Sbjct: 420 CRVYKNLEFAELAAGKLIEKDPQSAGAYVQLANIYAVANQWDDVSRVRRWMKDNTVVKTP 479

Query: 557 AISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQMGEDA--PSLD 602
             SWIEI+  +H F  +D LHP   +++  L QLA +M E    P LD
Sbjct: 480 GYSWIEIKGVLHEFRSNDRLHPQLYLIHEKLGQLAERMKEMGYVPDLD 527



 Score = 59.7 bits (143), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 38/111 (34%), Positives = 62/111 (55%), Gaps = 8/111 (7%)

Query: 52  AETLAFILQQCAESKSLKLGKRVH---LHLKLTQRKTPTTFLSNHLISMYFKCGSDVDAR 108
           A TL+ +L  C+   +L  GK++H   + L L++  T  T     L+SMY KCG    A 
Sbjct: 241 ASTLSSVLLGCSNLSALGFGKQIHQWCMKLLLSRNLTVGT----SLVSMYCKCGDLSSAC 296

Query: 109 KVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDV-VSWNTMII 158
            +F ++  +++ ++N M+SGYA  G  K A NLF+ M +  V  +W T ++
Sbjct: 297 ILFGEMHTRDVVAWNAMISGYAQHGDGKEAINLFERMKDEGVEPNWITFVV 347


>gi|449469094|ref|XP_004152256.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14050,
           mitochondrial-like [Cucumis sativus]
          Length = 611

 Score =  301 bits (772), Expect = 5e-79,   Method: Compositional matrix adjust.
 Identities = 160/475 (33%), Positives = 268/475 (56%), Gaps = 4/475 (0%)

Query: 123 NNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVL-RRFSI 181
           N +L  Y   G++  A  LFD M  RD VSW +++  + K+      L     +     +
Sbjct: 42  NTLLDVYGKCGLIPQALQLFDEMPNRDHVSWASILTAHNKALIPRRTLSMLNTMFTHDGL 101

Query: 182 SCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARR 241
             + F FA I+  C  L  L+L +QVH + +++ F  + V+ SS++D Y KCG+  DAR 
Sbjct: 102 QPDHFVFACIVRACSSLGYLRLGKQVHARFMLSFFCDDEVVKSSLIDMYTKCGQPDDARA 161

Query: 242 LFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKA 301
           +FD    ++ ++WT+M+SGYA+ G    A  LF + P +N  SWT LI+G  ++G G  +
Sbjct: 162 VFDSILFKNSVSWTSMISGYARSGRKCEAMDLFLQAPVRNLFSWTALISGLIQSGHGIYS 221

Query: 302 LELFTRMMILRIR-PNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLID 360
             LF  M    I   +    SS +  CA++  L+ GKQ+HG +I   F S   + ++L+D
Sbjct: 222 FSLFNEMRREGIDIVDPLVLSSVVGGCANLALLELGKQIHGLVIALGFESCLFISNALVD 281

Query: 361 MYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKI 420
           MY+KC  +   + +F     K+  + W ++I    QHG  E+A+ L+ +MV S +KP+++
Sbjct: 282 MYAKCSDILAAKDIFYRMPRKD-VISWTSIIVGTAQHGKAEEALTLYDEMVLSRIKPNEV 340

Query: 421 TLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEK 480
           T   +L AC+H+GLV  G   F SMT D  I P+ +H+ CL++LL+++G  D+  N L+K
Sbjct: 341 TFVGLLYACSHAGLVSRGRELFRSMTTDYSINPSLQHYTCLLDLLSRSGHLDEAENLLDK 400

Query: 481 MPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLV 540
           +P++ D   W +L   C  H N++MG ++ D+++D  P+  +T+ LLS++Y+       V
Sbjct: 401 IPFKPDEPTWASLLSACMRHNNLEMGVRIADRVLDLKPEDPSTYILLSNVYAGAEMWGSV 460

Query: 541 EKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSL-HPMRDVLYSVLEQLAGQM 594
            KVR+L++  + +KE   S I+       F   +S  HPM++ + ++L+ L  +M
Sbjct: 461 SKVRKLMSSMEVRKEPGYSSIDFGKDSQVFHAGESCDHPMKNEICNLLKDLDAEM 515



 Score =  161 bits (407), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 108/389 (27%), Positives = 189/389 (48%), Gaps = 38/389 (9%)

Query: 42  LLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKC 101
           +    G++      A I++ C+    L+LGK+VH    L+        + + LI MY KC
Sbjct: 95  MFTHDGLQPDHFVFACIVRACSSLGYLRLGKQVHARFMLS-FFCDDEVVKSSLIDMYTKC 153

Query: 102 GSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYA 161
           G   DAR VFD I  KN  S+ +M+SGYA  G    A +LF     R++ SW  +I G  
Sbjct: 154 GQPDDARAVFDSILFKNSVSWTSMISGYARSGRKCEAMDLFLQAPVRNLFSWTALISGLI 213

Query: 162 KSGAVEEGLKFYKVLRRFSIS-CNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNV 220
           +SG        +  +RR  I   +    + ++  C  L  L+L +Q+HG V+  GF S +
Sbjct: 214 QSGHGIYSFSLFNEMRREGIDIVDPLVLSSVVGGCANLALLELGKQIHGLVIALGFESCL 273

Query: 221 VISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEK 280
            IS+++VD YAKC ++  A+ +F     +DV++WT+++ G A+ G  E A  L++EM   
Sbjct: 274 FISNALVDMYAKCSDILAAKDIFYRMPRKDVISWTSIIVGTAQHGKAEEALTLYDEM--- 330

Query: 281 NPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVH 340
                                       ++ RI+PN+ TF   L AC+    +  G+++ 
Sbjct: 331 ----------------------------VLSRIKPNEVTFVGLLYACSHAGLVSRGRELF 362

Query: 341 GFLIRTNFRSNTIVM--SSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHG 398
             +  T++  N  +   + L+D+ S+ G L++   + D    K +   W +++SA  +H 
Sbjct: 363 RSMT-TDYSINPSLQHYTCLLDLLSRSGHLDEAENLLDKIPFKPDEPTWASLLSACMRHN 421

Query: 399 YDEQAIRLFHDMVRSSVKPDKITLAVILN 427
             E  +R+   ++   +KP+  +  ++L+
Sbjct: 422 NLEMGVRIADRVL--DLKPEDPSTYILLS 448



 Score =  108 bits (271), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 73/247 (29%), Positives = 123/247 (49%), Gaps = 40/247 (16%)

Query: 192 LTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDV 251
           L +C + +      ++H Q++  GF  + ++S++++D Y KCG +  A +LFDE   RD 
Sbjct: 10  LQLCARRQSASAAGELHSQIIKAGFDKSSLLSNTLLDVYGKCGLIPQALQLFDEMPNRDH 69

Query: 252 LTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMIL 311
           ++W ++++ + K         + N M              +T +GL              
Sbjct: 70  VSWASILTAHNKALIPRRTLSMLNTM--------------FTHDGL-------------- 101

Query: 312 RIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDG 371
             +P+   F+  + AC+S+  L+ GKQVH   + + F  + +V SSLIDMY+KCG  +D 
Sbjct: 102 --QPDHFVFACIVRACSSLGYLRLGKQVHARFMLSFFCDDEVVKSSLIDMYTKCGQPDDA 159

Query: 372 RQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTH 431
           R VFD    K NS+ W +MIS   + G   +A+ LF   +++ V+      A+I      
Sbjct: 160 RAVFDSILFK-NSVSWTSMISGYARSGRKCEAMDLF---LQAPVRNLFSWTALI------ 209

Query: 432 SGLVQEG 438
           SGL+Q G
Sbjct: 210 SGLIQSG 216



 Score = 66.6 bits (161), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 62/267 (23%), Positives = 118/267 (44%), Gaps = 37/267 (13%)

Query: 27  LISKGQLSEAISSLDLLAQRGIRLPAE-TLAFILQQCAESKSLKLGKRVHLHLKLTQRKT 85
           LI  G    + S  + + + GI +     L+ ++  CA    L+LGK++H  L +     
Sbjct: 212 LIQSGHGIYSFSLFNEMRREGIDIVDPLVLSSVVGGCANLALLELGKQIH-GLVIALGFE 270

Query: 86  PTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNM 145
              F+SN L+ MY KC   + A+ +F ++P K++ S+ +++ G A  G  + A  L+D M
Sbjct: 271 SCLFISNALVDMYAKCSDILAAKDIFYRMPRKDVISWTSIIVGTAQHGKAEEALTLYDEM 330

Query: 146 AERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTR 205
                                        VL R  I  NE +F G+L  C     +   R
Sbjct: 331 -----------------------------VLSR--IKPNEVTFVGLLYACSHAGLVSRGR 359

Query: 206 QVHGQVLVTGFLSNVVIS--SSIVDAYAKCGELSDARRLFDETDAR-DVLTWTTMVSGYA 262
           ++  + + T +  N  +   + ++D  ++ G L +A  L D+   + D  TW +++S   
Sbjct: 360 ELF-RSMTTDYSINPSLQHYTCLLDLLSRSGHLDEAENLLDKIPFKPDEPTWASLLSACM 418

Query: 263 KLGDMESASKLFNEMPEKNPVSWTTLI 289
           +  ++E   ++ + + +  P   +T I
Sbjct: 419 RHNNLEMGVRIADRVLDLKPEDPSTYI 445


>gi|334186267|ref|NP_192012.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635642|sp|Q9SV26.2|PP297_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g01030, mitochondrial; Flags: Precursor
 gi|332656570|gb|AEE81970.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 768

 Score =  301 bits (772), Expect = 5e-79,   Method: Compositional matrix adjust.
 Identities = 179/607 (29%), Positives = 301/607 (49%), Gaps = 45/607 (7%)

Query: 31  GQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFL 90
           G   +A+     +   G +    T+  +LQ C+  +    G+++H ++ L         +
Sbjct: 68  GNWEKAVELFREMQFSGAKAYDSTMVKLLQVCSNKEGFAEGRQIHGYV-LRLGLESNVSM 126

Query: 91  SNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMA---- 146
            N LI MY + G    +RKVF+ +  +NL S+N++LS Y  LG +  A  L D M     
Sbjct: 127 CNSLIVMYSRNGKLELSRKVFNSMKDRNLSSWNSILSSYTKLGYVDDAIGLLDEMEICGL 186

Query: 147 ERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQ 206
           + D+V+WN+++ GYA  G  ++ +   K ++   +  +  S + +L    +   LKL + 
Sbjct: 187 KPDIVTWNSLLSGYASKGLSKDAIAVLKRMQIAGLKPSTSSISSLLQAVAEPGHLKLGKA 246

Query: 207 VHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDAR----------------- 249
           +HG +L      +V + ++++D Y K G L  AR +FD  DA+                 
Sbjct: 247 IHGYILRNQLWYDVYVETTLIDMYIKTGYLPYARMVFDMMDAKNIVAWNSLVSGLSYACL 306

Query: 250 ------------------DVLTWTTMVSGYAKLGDMESASKLFNEMPEK----NPVSWTT 287
                             D +TW ++ SGYA LG  E A  +  +M EK    N VSWT 
Sbjct: 307 LKDAEALMIRMEKEGIKPDAITWNSLASGYATLGKPEKALDVIGKMKEKGVAPNVVSWTA 366

Query: 288 LIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTN 347
           + +G ++NG  + AL++F +M    + PN  T S+ L     +  L  GK+VHGF +R N
Sbjct: 367 IFSGCSKNGNFRNALKVFIKMQEEGVGPNAATMSTLLKILGCLSLLHSGKEVHGFCLRKN 426

Query: 348 FRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLF 407
              +  V ++L+DMY K G L    ++F    NK  +  WN M+      G  E+ I  F
Sbjct: 427 LICDAYVATALVDMYGKSGDLQSAIEIFWGIKNKSLAS-WNCMLMGYAMFGRGEEGIAAF 485

Query: 408 HDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQ 467
             M+ + ++PD IT   +L+ C +SGLVQEG  YF+ M    GIIP  EH +C+++LL +
Sbjct: 486 SVMLEAGMEPDAITFTSVLSVCKNSGLVQEGWKYFDLMRSRYGIIPTIEHCSCMVDLLGR 545

Query: 468 AGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLL 527
           +G  D+  + ++ M  + D+ +W A    C+IH ++++      +L    P +SA + ++
Sbjct: 546 SGYLDEAWDFIQTMSLKPDATIWGAFLSSCKIHRDLELAEIAWKRLQVLEPHNSANYMMM 605

Query: 528 SSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVL 587
            ++YS L +   VE++R L+   + + +   SWI+I+  VH F      HP    +Y  L
Sbjct: 606 INLYSNLNRWEDVERIRNLMRNNRVRVQDLWSWIQIDQTVHIFYAEGKTHPDEGDIYFEL 665

Query: 588 EQLAGQM 594
            +L  +M
Sbjct: 666 YKLVSEM 672



 Score =  176 bits (447), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 100/321 (31%), Positives = 173/321 (53%), Gaps = 6/321 (1%)

Query: 138 ARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVK 197
           A  LFD M +RD ++WN +++   +SG  E+ ++ ++ ++       + +   +L +C  
Sbjct: 42  ANKLFDEMPKRDDLAWNEIVMVNLRSGNWEKAVELFREMQFSGAKAYDSTMVKLLQVCSN 101

Query: 198 LEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTM 257
            E     RQ+HG VL  G  SNV + +S++  Y++ G+L  +R++F+    R++ +W ++
Sbjct: 102 KEGFAEGRQIHGYVLRLGLESNVSMCNSLIVMYSRNGKLELSRKVFNSMKDRNLSSWNSI 161

Query: 258 VSGYAKLGDMESASKLFNEMP----EKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRI 313
           +S Y KLG ++ A  L +EM     + + V+W +L++GY   GL + A+ +  RM I  +
Sbjct: 162 LSSYTKLGYVDDAIGLLDEMEICGLKPDIVTWNSLLSGYASKGLSKDAIAVLKRMQIAGL 221

Query: 314 RPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQ 373
           +P+  + SS L A A    LK GK +HG+++R     +  V ++LIDMY K G L   R 
Sbjct: 222 KPSTSSISSLLQAVAEPGHLKLGKAIHGYILRNQLWYDVYVETTLIDMYIKTGYLPYARM 281

Query: 374 VFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSG 433
           VFD+ D K N + WN+++S L+     + A  L   M +  +KPD IT   + +     G
Sbjct: 282 VFDMMDAK-NIVAWNSLVSGLSYACLLKDAEALMIRMEKEGIKPDAITWNSLASGYATLG 340

Query: 434 LVQEGLTYFESMTHDLGIIPN 454
             ++ L     M    G+ PN
Sbjct: 341 KPEKALDVIGKMKEK-GVAPN 360



 Score =  115 bits (287), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 87/325 (26%), Positives = 159/325 (48%), Gaps = 14/325 (4%)

Query: 240 RRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQ 299
           +R  D +D R V   +  +  Y +   +  A+KLF+EMP+++ ++W  ++    R+G  +
Sbjct: 15  KRGLDNSDTRVV---SASMGFYGRCVSLGFANKLFDEMPKRDDLAWNEIVMVNLRSGNWE 71

Query: 300 KALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLI 359
           KA+ELF  M     +    T    L  C++      G+Q+HG+++R    SN  + +SLI
Sbjct: 72  KAVELFREMQFSGAKAYDSTMVKLLQVCSNKEGFAEGRQIHGYVLRLGLESNVSMCNSLI 131

Query: 360 DMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDK 419
            MYS+ G L   R+VF+   ++ N   WN+++S+ T+ GY + AI L  +M    +KPD 
Sbjct: 132 VMYSRNGKLELSRKVFNSMKDR-NLSSWNSILSSYTKLGYVDDAIGLLDEMEICGLKPDI 190

Query: 420 ITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAG---CSDQLMN 476
           +T   +L+     GL ++ +   + M    G+ P+    + L++ +A+ G       +  
Sbjct: 191 VTWNSLLSGYASKGLSKDAIAVLKRM-QIAGLKPSTSSISSLLQAVAEPGHLKLGKAIHG 249

Query: 477 QLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSI-YSALG 535
            + +    +D Y+   L  +    G +   R V D +  +N    A + L+S + Y+ L 
Sbjct: 250 YILRNQLWYDVYVETTLIDMYIKTGYLPYARMVFDMMDAKNI--VAWNSLVSGLSYACLL 307

Query: 536 KGRLVEKVRQLINERQFKKEQAISW 560
           K      +R    E++  K  AI+W
Sbjct: 308 KDAEALMIRM---EKEGIKPDAITW 329


>gi|298205062|emb|CBI38358.3| unnamed protein product [Vitis vinifera]
          Length = 549

 Score =  301 bits (772), Expect = 5e-79,   Method: Compositional matrix adjust.
 Identities = 167/493 (33%), Positives = 283/493 (57%), Gaps = 8/493 (1%)

Query: 107 ARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSG-- 164
           A+++FD+IP  N F YN+++ GY+N      A  LF  M     +S N   + +      
Sbjct: 41  AQRMFDQIPQPNKFMYNSLIRGYSNSDDPIDAVLLFRRMICSG-LSPNEFTLPFVLKACG 99

Query: 165 ---AVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVV 221
              A  E +  + +  +  I    F    ++ + V    +   R++   +     L +++
Sbjct: 100 CKSAYWEAVLVHGLAIKLGIGSLVFVQNALIAVYVVCGLIHCARKLFDDI-TDKTLIDII 158

Query: 222 ISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKN 281
           + +++VD YAKCG L  A+ +FD T  ++V++WT+M+S YA+ G +E A ++F++MP KN
Sbjct: 159 VRNALVDMYAKCGNLHSAQAIFDRTQEKNVVSWTSMISAYAQHGSIEVARQIFDQMPGKN 218

Query: 282 PVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHG 341
            VSW ++I+ Y R G  ++AL+LF +M   R+ P++ T  S L AC+ +  L  GK++H 
Sbjct: 219 VVSWNSMISCYLREGQYREALDLFNKMRNSRVVPDEATLVSILAACSQLGDLVMGKKIHN 278

Query: 342 FLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDE 401
           +++         + +SLIDMY+KCG +     +F L    +N + WN +I AL  HG   
Sbjct: 279 YILSNKGAYGVTLYNSLIDMYAKCGPVVTALDIF-LEMPGKNLVSWNVIIGALALHGCGL 337

Query: 402 QAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACL 461
           +AI+LF +M      PD+ITL  +L+AC+HSGLV  GL YF+ M     +    EH+AC+
Sbjct: 338 EAIKLFEEMQADGTLPDEITLTGLLSACSHSGLVDMGLYYFDRMGVIYRVPREIEHYACM 397

Query: 462 IELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSS 521
           ++LL + G   + +  + +MP + D  +W AL G CRIHGN+++G++++ QL++  P S 
Sbjct: 398 VDLLGRGGLLGEAIELIGRMPMKPDVVVWGALLGACRIHGNVEIGKQILKQLLELEPHSG 457

Query: 522 ATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRD 581
             + L+S+IY    +   V+K+R+L+ +R  KK +AIS IEI+  ++ F V D  H +  
Sbjct: 458 GLYVLISNIYWEAQRWEDVKKIRKLMIDRGIKKGRAISSIEIDGCIYEFMVDDKRHKISS 517

Query: 582 VLYSVLEQLAGQM 594
            +Y++L+QL   +
Sbjct: 518 SIYAMLDQLTDHL 530



 Score =  139 bits (350), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 93/366 (25%), Positives = 175/366 (47%), Gaps = 12/366 (3%)

Query: 80  LTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHAR 139
           +T +      + N L+ MY KCG+   A+ +FD+   KN+ S+ +M+S YA  G ++ AR
Sbjct: 149 ITDKTLIDIIVRNALVDMYAKCGNLHSAQAIFDRTQEKNVVSWTSMISAYAQHGSIEVAR 208

Query: 140 NLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLE 199
            +FD M  ++VVSWN+MI  Y + G   E L  +  +R   +  +E +   IL  C +L 
Sbjct: 209 QIFDQMPGKNVVSWNSMISCYLREGQYREALDLFNKMRNSRVVPDEATLVSILAACSQLG 268

Query: 200 ELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVS 259
           +L + +++H  +L       V + +S++D YAKCG +  A  +F E   +++++W  ++ 
Sbjct: 269 DLVMGKKIHNYILSNKGAYGVTLYNSLIDMYAKCGPVVTALDIFLEMPGKNLVSWNVIIG 328

Query: 260 GYAKLGDMESASKLFNEMPE----KNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRP 315
             A  G    A KLF EM       + ++ T L++  + +GL    L  F RM ++   P
Sbjct: 329 ALALHGCGLEAIKLFEEMQADGTLPDEITLTGLLSACSHSGLVDMGLYYFDRMGVIYRVP 388

Query: 316 NQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVF 375
            +    +C+        L    +    + R   + + +V  +L+      G +  G+Q+ 
Sbjct: 389 REIEHYACMVDLLGRGGLL--GEAIELIGRMPMKPDVVVWGALLGACRIHGNVEIGKQIL 446

Query: 376 -DLTDNKENSMLWNTMISAL---TQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTH 431
             L + + +S     +IS +    Q   D + IR    M+   +K  +   ++ ++ C +
Sbjct: 447 KQLLELEPHSGGLYVLISNIYWEAQRWEDVKKIRKL--MIDRGIKKGRAISSIEIDGCIY 504

Query: 432 SGLVQE 437
             +V +
Sbjct: 505 EFMVDD 510



 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 78/302 (25%), Positives = 129/302 (42%), Gaps = 68/302 (22%)

Query: 265 GDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCL 324
           GD++ A ++F+++P+ N   + +LI GY+ +     A+ LF RM+   + PN+ T    L
Sbjct: 36  GDLQYAQRMFDQIPQPNKFMYNSLIRGYSNSDDPIDAVLLFRRMICSGLSPNEFTLPFVL 95

Query: 325 CACASIVSLKHGKQVHGFLIRTNFRS---------------------------------- 350
            AC    +      VHG  I+    S                                  
Sbjct: 96  KACGCKSAYWEAVLVHGLAIKLGIGSLVFVQNALIAVYVVCGLIHCARKLFDDITDKTLI 155

Query: 351 NTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHG--------YDE- 401
           + IV ++L+DMY+KCG L+  + +FD T  K N + W +MISA  QHG        +D+ 
Sbjct: 156 DIIVRNALVDMYAKCGNLHSAQAIFDRTQEK-NVVSWTSMISAYAQHGSIEVARQIFDQM 214

Query: 402 ----------------------QAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGL 439
                                 +A+ LF+ M  S V PD+ TL  IL AC+  G +  G 
Sbjct: 215 PGKNVVSWNSMISCYLREGQYREALDLFNKMRNSRVVPDEATLVSILAACSQLGDLVMGK 274

Query: 440 TYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRI 499
                +  + G      +++ LI++ A+ G     ++   +MP + +   WN + G   +
Sbjct: 275 KIHNYILSNKGAYGVTLYNS-LIDMYAKCGPVVTALDIFLEMPGK-NLVSWNVIIGALAL 332

Query: 500 HG 501
           HG
Sbjct: 333 HG 334



 Score = 66.2 bits (160), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 47/160 (29%), Positives = 78/160 (48%), Gaps = 8/160 (5%)

Query: 18  NCLIQSFLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLH 77
           N +I  +L    +GQ  EA+   + +    +     TL  IL  C++   L +GK++H +
Sbjct: 223 NSMISCYLR---EGQYREALDLFNKMRNSRVVPDEATLVSILAACSQLGDLVMGKKIHNY 279

Query: 78  LKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKH 137
           + L+ +      L N LI MY KCG  V A  +F ++P KNL S+N ++   A  G    
Sbjct: 280 I-LSNKGAYGVTLYNSLIDMYAKCGPVVTALDIFLEMPGKNLVSWNVIIGALALHGCGLE 338

Query: 138 ARNLFDNMAER----DVVSWNTMIIGYAKSGAVEEGLKFY 173
           A  LF+ M       D ++   ++   + SG V+ GL ++
Sbjct: 339 AIKLFEEMQADGTLPDEITLTGLLSACSHSGLVDMGLYYF 378


>gi|240255401|ref|NP_189042.4| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332643322|gb|AEE76843.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 665

 Score =  301 bits (772), Expect = 5e-79,   Method: Compositional matrix adjust.
 Identities = 151/474 (31%), Positives = 261/474 (55%), Gaps = 33/474 (6%)

Query: 123 NNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSIS 182
           N +L+ YA  G ++ AR +F+ M +RD V+W T+I GY++     + L F+  + RF  S
Sbjct: 99  NTLLNMYAKCGSLEEARKVFEKMPQRDFVTWTTLISGYSQHDRPCDALLFFNQMLRFGYS 158

Query: 183 CNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRL 242
            NEF+ + ++             Q+HG  +  GF SNV + S+++D Y + G + DA+ +
Sbjct: 159 PNEFTLSSVIKAAAAERRGCCGHQLHGFCVKCGFDSNVHVGSALLDLYTRYGLMDDAQLV 218

Query: 243 FDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKAL 302
                                          F+ +  +N VSW  LIAG+ R    +KAL
Sbjct: 219 -------------------------------FDALESRNDVSWNALIAGHARRSGTEKAL 247

Query: 303 ELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMY 362
           ELF  M+    RP+  +++S   AC+S   L+ GK VH ++I++  +      ++L+DMY
Sbjct: 248 ELFQGMLRDGFRPSHFSYASLFGACSSTGFLEQGKWVHAYMIKSGEKLVAFAGNTLLDMY 307

Query: 363 SKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITL 422
           +K G ++D R++FD    K + + WN++++A  QHG+ ++A+  F +M R  ++P++I+ 
Sbjct: 308 AKSGSIHDARKIFDRL-AKRDVVSWNSLLTAYAQHGFGKEAVWWFEEMRRVGIRPNEISF 366

Query: 423 AVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMP 482
             +L AC+HSGL+ EG  Y+E M  D GI+P   H+  +++LL +AG  ++ +  +E+MP
Sbjct: 367 LSVLTACSHSGLLDEGWHYYELMKKD-GIVPEAWHYVTVVDLLGRAGDLNRALRFIEEMP 425

Query: 483 YEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEK 542
            E  + +W AL   CR+H N ++G    + + + +P     H +L +IY++ G+     +
Sbjct: 426 IEPTAAIWKALLNACRMHKNTELGAYAAEHVFELDPDDPGPHVILYNIYASGGRWNDAAR 485

Query: 543 VRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQMGE 596
           VR+ + E   KKE A SW+EIEN +H F  +D  HP R+ +    E++  ++ E
Sbjct: 486 VRKKMKESGVKKEPACSWVEIENAIHMFVANDERHPQREEIARKWEEVLAKIKE 539



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 41/126 (32%), Positives = 67/126 (53%)

Query: 120 FSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRF 179
           F+ N +L  YA  G +  AR +FD +A+RDVVSWN+++  YA+ G  +E + +++ +RR 
Sbjct: 298 FAGNTLLDMYAKSGSIHDARKIFDRLAKRDVVSWNSLLTAYAQHGFGKEAVWWFEEMRRV 357

Query: 180 SISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDA 239
            I  NE SF  +LT C     L      +  +   G +       ++VD   + G+L+ A
Sbjct: 358 GIRPNEISFLSVLTACSHSGLLDEGWHYYELMKKDGIVPEAWHYVTVVDLLGRAGDLNRA 417

Query: 240 RRLFDE 245
            R  +E
Sbjct: 418 LRFIEE 423



 Score = 72.0 bits (175), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 59/253 (23%), Positives = 121/253 (47%), Gaps = 14/253 (5%)

Query: 47  GIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVD 106
           G R    + A +   C+ +  L+ GK VH ++  +  K    F  N L+ MY K GS  D
Sbjct: 257 GFRPSHFSYASLFGACSSTGFLEQGKWVHAYMIKSGEKL-VAFAGNTLLDMYAKSGSIHD 315

Query: 107 ARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDV----VSWNTMIIGYAK 162
           ARK+FD++  +++ S+N++L+ YA  G  K A   F+ M    +    +S+ +++   + 
Sbjct: 316 ARKIFDRLAKRDVVSWNSLLTAYAQHGFGKEAVWWFEEMRRVGIRPNEISFLSVLTACSH 375

Query: 163 SGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLV--TGFLSNV 220
           SG ++EG  +Y+++++  I    + +  ++ +  +  +L    +   ++ +  T  +   
Sbjct: 376 SGLLDEGWHYYELMKKDGIVPEAWHYVTVVDLLGRAGDLNRALRFIEEMPIEPTAAIWKA 435

Query: 221 VISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPE- 279
           ++++  +    + G  + A  +F E D  D      + + YA  G    A+++  +M E 
Sbjct: 436 LLNACRMHKNTELGAYA-AEHVF-ELDPDDPGPHVILYNIYASGGRWNDAARVRKKMKES 493

Query: 280 ---KNPV-SWTTL 288
              K P  SW  +
Sbjct: 494 GVKKEPACSWVEI 506



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 33/118 (27%), Positives = 67/118 (56%), Gaps = 1/118 (0%)

Query: 313 IRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGR 372
           I  ++  +++ L  C     L  G+ VH  ++++ FR + ++ ++L++MY+KCG L + R
Sbjct: 56  IPADRRFYNTLLKKCTVFKLLIQGRIVHAHILQSIFRHDIVMGNTLLNMYAKCGSLEEAR 115

Query: 373 QVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACT 430
           +VF+    + + + W T+IS  +QH     A+  F+ M+R    P++ TL+ ++ A  
Sbjct: 116 KVFEKMPQR-DFVTWTTLISGYSQHDRPCDALLFFNQMLRFGYSPNEFTLSSVIKAAA 172


>gi|15239745|ref|NP_199702.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170778|sp|Q9FI80.1|PP425_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g48910
 gi|10177180|dbj|BAB10314.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|15810559|gb|AAL07167.1| putative selenium-binding protein [Arabidopsis thaliana]
 gi|332008359|gb|AED95742.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 646

 Score =  301 bits (772), Expect = 5e-79,   Method: Compositional matrix adjust.
 Identities = 158/477 (33%), Positives = 268/477 (56%), Gaps = 18/477 (3%)

Query: 135 MKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLK---FYKVLRRFSISCNEFSFAGI 191
           + +A  +F+ M +R+  SWNT+I G+++S   +  +    FY+++    +  N F+F  +
Sbjct: 75  LDYAHKIFNQMPQRNCFSWNTIIRGFSESDEDKALIAITLFYEMMSDEFVEPNRFTFPSV 134

Query: 192 LTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDE------ 245
           L  C K  +++  +Q+HG  L  GF  +  + S++V  Y  CG + DAR LF +      
Sbjct: 135 LKACAKTGKIQEGKQIHGLALKYGFGGDEFVMSNLVRMYVMCGFMKDARVLFYKNIIEKD 194

Query: 246 ----TDAR----DVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGL 297
               TD R    +++ W  M+ GY +LGD ++A  LF++M +++ VSW T+I+GY+ NG 
Sbjct: 195 MVVMTDRRKRDGEIVLWNVMIDGYMRLGDCKAARMLFDKMRQRSVVSWNTMISGYSLNGF 254

Query: 298 GQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSS 357
            + A+E+F  M    IRPN  T  S L A + + SL+ G+ +H +   +  R + ++ S+
Sbjct: 255 FKDAVEVFREMKKGDIRPNYVTLVSVLPAISRLGSLELGEWLHLYAEDSGIRIDDVLGSA 314

Query: 358 LIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKP 417
           LIDMYSKCG +     VF+    +EN + W+ MI+    HG    AI  F  M ++ V+P
Sbjct: 315 LIDMYSKCGIIEKAIHVFERLP-RENVITWSAMINGFAIHGQAGDAIDCFCKMRQAGVRP 373

Query: 418 DKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQ 477
             +    +L AC+H GLV+EG  YF  M    G+ P  EH+ C+++LL ++G  D+    
Sbjct: 374 SDVAYINLLTACSHGGLVEEGRRYFSQMVSVDGLEPRIEHYGCMVDLLGRSGLLDEAEEF 433

Query: 478 LEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKG 537
           +  MP + D  +W AL G CR+ GN++MG++V + L+D  P  S  +  LS++Y++ G  
Sbjct: 434 ILNMPIKPDDVIWKALLGACRMQGNVEMGKRVANILMDMVPHDSGAYVALSNMYASQGNW 493

Query: 538 RLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQM 594
             V ++R  + E+  +K+   S I+I+  +H F V D  HP    + S+L +++ ++
Sbjct: 494 SEVSEMRLRMKEKDIRKDPGCSLIDIDGVLHEFVVEDDSHPKAKEINSMLVEISDKL 550



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 91/376 (24%), Positives = 171/376 (45%), Gaps = 50/376 (13%)

Query: 54  TLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDK 113
           T   +L+ CA++  ++ GK++H  L L        F+ ++L+ MY  CG   DAR +F K
Sbjct: 130 TFPSVLKACAKTGKIQEGKQIH-GLALKYGFGGDEFVMSNLVRMYVMCGFMKDARVLFYK 188

Query: 114 IPVKN--------------LFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIG 159
             ++               +  +N M+ GY  LG  K AR LFD M +R VVSWNTMI G
Sbjct: 189 NIIEKDMVVMTDRRKRDGEIVLWNVMIDGYMRLGDCKAARMLFDKMRQRSVVSWNTMISG 248

Query: 160 YAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSN 219
           Y+ +G  ++ ++ ++ +++  I  N  +   +L    +L  L+L   +H     +G   +
Sbjct: 249 YSLNGFFKDAVEVFREMKKGDIRPNYVTLVSVLPAISRLGSLELGEWLHLYAEDSGIRID 308

Query: 220 VVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPE 279
            V+ S+++D Y+KCG +  A  +F+     +V+TW+ M++G+A                 
Sbjct: 309 DVLGSALIDMYSKCGIIEKAIHVFERLPRENVITWSAMINGFAI---------------- 352

Query: 280 KNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQV 339
                          +G    A++ F +M    +RP+   + + L AC+    ++ G++ 
Sbjct: 353 ---------------HGQAGDAIDCFCKMRQAGVRPSDVAYINLLTACSHGGLVEEGRRY 397

Query: 340 HGFLIRTNFRSNTIV-MSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHG 398
              ++  +     I     ++D+  + G L++  +       K + ++W  ++ A    G
Sbjct: 398 FSQMVSVDGLEPRIEHYGCMVDLLGRSGLLDEAEEFILNMPIKPDDVIWKALLGACRMQG 457

Query: 399 YDEQAIR---LFHDMV 411
             E   R   +  DMV
Sbjct: 458 NVEMGKRVANILMDMV 473



 Score =  125 bits (313), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 80/283 (28%), Positives = 136/283 (48%), Gaps = 49/283 (17%)

Query: 266 DMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQK--ALELFTRMMILR-IRPNQHTFSS 322
           D++ A K+FN+MP++N  SW T+I G++ +   +   A+ LF  MM    + PN+ TF S
Sbjct: 74  DLDYAHKIFNQMPQRNCFSWNTIIRGFSESDEDKALIAITLFYEMMSDEFVEPNRFTFPS 133

Query: 323 CLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVF------- 375
            L ACA    ++ GKQ+HG  ++  F  +  VMS+L+ MY  CG + D R +F       
Sbjct: 134 VLKACAKTGKIQEGKQIHGLALKYGFGGDEFVMSNLVRMYVMCGFMKDARVLFYKNIIEK 193

Query: 376 --------------------------DLTDNKENSML-----------WNTMISALTQHG 398
                                      L D K   ML           WNTMIS  + +G
Sbjct: 194 DMVVMTDRRKRDGEIVLWNVMIDGYMRLGDCKAARMLFDKMRQRSVVSWNTMISGYSLNG 253

Query: 399 YDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHH 458
           + + A+ +F +M +  ++P+ +TL  +L A +  G ++ G  +      D GI  +    
Sbjct: 254 FFKDAVEVFREMKKGDIRPNYVTLVSVLPAISRLGSLELG-EWLHLYAEDSGIRIDDVLG 312

Query: 459 ACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHG 501
           + LI++ ++ G  ++ ++  E++P E +   W+A+     IHG
Sbjct: 313 SALIDMYSKCGIIEKAIHVFERLPRE-NVITWSAMINGFAIHG 354



 Score = 58.5 bits (140), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 40/147 (27%), Positives = 75/147 (51%), Gaps = 5/147 (3%)

Query: 31  GQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFL 90
           G   +A+     + +  IR    TL  +L   +   SL+LG+ +HL+ + +  +     L
Sbjct: 253 GFFKDAVEVFREMKKGDIRPNYVTLVSVLPAISRLGSLELGEWLHLYAEDSGIRIDDV-L 311

Query: 91  SNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDV 150
            + LI MY KCG    A  VF+++P +N+ +++ M++G+A  G    A + F  M +  V
Sbjct: 312 GSALIDMYSKCGIIEKAIHVFERLPRENVITWSAMINGFAIHGQAGDAIDCFCKMRQAGV 371

Query: 151 ----VSWNTMIIGYAKSGAVEEGLKFY 173
               V++  ++   +  G VEEG +++
Sbjct: 372 RPSDVAYINLLTACSHGGLVEEGRRYF 398


>gi|345505206|gb|AEN99827.1| chlororespiratory reduction 4, partial [Aethionema grandiflorum]
          Length = 594

 Score =  301 bits (772), Expect = 5e-79,   Method: Compositional matrix adjust.
 Identities = 179/538 (33%), Positives = 288/538 (53%), Gaps = 43/538 (7%)

Query: 42  LLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKC 101
           L+ + G+ +   +L+ +L+ C+  + LK G ++H  L+ T   +   FL N LI +Y KC
Sbjct: 91  LMIENGVCVDKFSLSLVLKACSRLEFLKEGMQIHGFLRKTGIWS-DLFLQNCLIGLYLKC 149

Query: 102 GSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAE--RDVVSWNTMIIG 159
           G    AR+VFD++P ++  SYN+M+ GY   G+MK A  LFD M    ++++SWN+MI G
Sbjct: 150 GCLGFARQVFDRMPQRDSVSYNSMIDGYVKCGLMKSAHKLFDLMPREIKNLISWNSMISG 209

Query: 160 YAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSN 219
           YA++    +GL             N  S              KL  ++  + L++     
Sbjct: 210 YAQTA---DGL-------------NTAS--------------KLFSEMPEKDLISW---- 235

Query: 220 VVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPE 279
               +S+++   K G + DA+ LFD    RDV+TW TM+ GYAKLG +  A  LF++M +
Sbjct: 236 ----NSMINGCVKHGRIEDAKGLFDVMPRRDVVTWATMIDGYAKLGFVHHAKSLFDQMHQ 291

Query: 280 KNPVSWTTLIAGYTRNGLGQKALELFTRM-MILRIRPNQHTFSSCLCACASIVSLKHGKQ 338
           ++ V+  +++AGY +N    +ALE+F  M     + P++ T    L A A +  L     
Sbjct: 292 RDVVACNSMMAGYVQNKYHMEALEIFNDMEKDSHLSPDETTLVIVLSAIAQLGRLSKAMS 351

Query: 339 VHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHG 398
           +H +++   F     +  +LIDM+SKCG +     VF+  +NK     WN MI  L  HG
Sbjct: 352 MHVYIVEKRFPLGGKLGVALIDMHSKCGSIQHAISVFEGIENKSIDH-WNAMIGGLAIHG 410

Query: 399 YDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHH 458
             E A  +   + R S++PD IT   +LNAC+HSGLV+EGL  FE M     I P  +H+
Sbjct: 411 LGELAFDMLMQIERCSIQPDXITFIGVLNACSHSGLVKEGLLCFELMRRKHXIEPRLQHY 470

Query: 459 ACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNP 518
            CL+++L+++G  +   + +E MP E +  +W +    C  H   + G  V   LI Q  
Sbjct: 471 GCLVDVLSRSGSIELAKHLIEDMPMEPNDVIWRSFLSACSTHEEFETGELVAKHLILQAG 530

Query: 519 QSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSL 576
            + +++ LLS++Y++LG  + V +VR ++ +R+  K    SWIE++  VH F V D  
Sbjct: 531 YNPSSYVLLSNMYASLGMWKDVRRVRMMMKQRKLHKIPGCSWIELDGNVHEFFVQDKF 588



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 104/376 (27%), Positives = 192/376 (51%), Gaps = 30/376 (7%)

Query: 149 DVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVH 208
           D   WN +I  Y+        L  + ++    +  ++FS + +L  C +LE LK   Q+H
Sbjct: 65  DPYLWNAVIKSYSHGIDPRRALLLFCLMIENGVCVDKFSLSLVLKACSRLEFLKEGMQIH 124

Query: 209 GQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDME 268
           G +  TG  S++ + + ++  Y KCG L  AR++FD    RD +++ +M+ GY K G M+
Sbjct: 125 GFLRKTGIWSDLFLQNCLIGLYLKCGCLGFARQVFDRMPQRDSVSYNSMIDGYVKCGLMK 184

Query: 269 SASKLFNEMPE--KNPVSWTTLIAGYTRNGLG-QKALELFTRMMILRIRPNQH--TFSSC 323
           SA KLF+ MP   KN +SW ++I+GY +   G   A +LF+ M      P +   +++S 
Sbjct: 185 SAHKLFDLMPREIKNLISWNSMISGYAQTADGLNTASKLFSEM------PEKDLISWNSM 238

Query: 324 LCACASIVSLKHGK-QVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKE 382
           +  C     +KHG+ +    L     R + +  +++ID Y+K G ++  + +FD   ++ 
Sbjct: 239 INGC-----VKHGRIEDAKGLFDVMPRRDVVTWATMIDGYAKLGFVHHAKSLFDQM-HQR 292

Query: 383 NSMLWNTMISALTQHGYDEQAIRLFHDMVRSS-VKPDKITLAVILNACTHSGLVQEGLT- 440
           + +  N+M++   Q+ Y  +A+ +F+DM + S + PD+ TL ++L+A    G + + ++ 
Sbjct: 293 DVVACNSMMAGYVQNKYHMEALEIFNDMEKDSHLSPDETTLVIVLSAIAQLGRLSKAMSM 352

Query: 441 --YFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCR 498
             Y       LG     +    LI++ ++ G     ++  E +  +   + WNA+ G   
Sbjct: 353 HVYIVEKRFPLG----GKLGVALIDMHSKCGSIQHAISVFEGIENKSIDH-WNAMIGGLA 407

Query: 499 IHGNIDMGRKVVDQLI 514
           IHG   +G    D L+
Sbjct: 408 IHG---LGELAFDMLM 420



 Score = 85.5 bits (210), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 61/207 (29%), Positives = 101/207 (48%), Gaps = 21/207 (10%)

Query: 206 QVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLG 265
           ++H +++ TG + N  +++ IV A+        +RR +    AR V     + S  A  G
Sbjct: 10  KMHARLITTGLIKNPNLTTRIVLAFVA------SRRSYLAEFARCVFYEYYLCSFSAGEG 63

Query: 266 DMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLC 325
           +              +P  W  +I  Y+     ++AL LF  M+   +  ++ + S  L 
Sbjct: 64  E--------------DPYLWNAVIKSYSHGIDPRRALLLFCLMIENGVCVDKFSLSLVLK 109

Query: 326 ACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSM 385
           AC+ +  LK G Q+HGFL +T   S+  + + LI +Y KCGCL   RQVFD    ++ S+
Sbjct: 110 ACSRLEFLKEGMQIHGFLRKTGIWSDLFLQNCLIGLYLKCGCLGFARQVFDRMPQRD-SV 168

Query: 386 LWNTMISALTQHGYDEQAIRLFHDMVR 412
            +N+MI    + G  + A +LF  M R
Sbjct: 169 SYNSMIDGYVKCGLMKSAHKLFDLMPR 195



 Score = 52.0 bits (123), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 41/140 (29%), Positives = 68/140 (48%), Gaps = 10/140 (7%)

Query: 382 ENSMLWNTMISALTQHGYD-EQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLT 440
           E+  LWN +I + + HG D  +A+ LF  M+ + V  DK +L+++L AC+    ++EG+ 
Sbjct: 64  EDPYLWNAVIKSYS-HGIDPRRALLLFCLMIENGVCVDKFSLSLVLKACSRLEFLKEGMQ 122

Query: 441 YFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIH 500
                    GI  +     CLI L  + GC        ++MP + DS  +N++     I 
Sbjct: 123 -IHGFLRKTGIWSDLFLQNCLIGLYLKCGCLGFARQVFDRMP-QRDSVSYNSM-----ID 175

Query: 501 GNIDMG-RKVVDQLIDQNPQ 519
           G +  G  K   +L D  P+
Sbjct: 176 GYVKCGLMKSAHKLFDLMPR 195


>gi|125524780|gb|EAY72894.1| hypothetical protein OsI_00769 [Oryza sativa Indica Group]
          Length = 569

 Score =  301 bits (772), Expect = 6e-79,   Method: Compositional matrix adjust.
 Identities = 174/564 (30%), Positives = 301/564 (53%), Gaps = 29/564 (5%)

Query: 54  TLAFILQQCAESKSLKLGKRVH---LHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKV 110
           TL   L+  A   S ++   VH   LHL L  +      ++  +++ Y + G   DAR+V
Sbjct: 13  TLPLALRAAA---SPRVASAVHAHALHLGLHAQHD----VAGQILAAYSRLGRAADARRV 65

Query: 111 FDKIPV-KNLFSYNNMLSGYANLGMMKHARNLFDNMA----ERDVVSWNTMIIGYAKSGA 165
           FD +P  +  F +N ++S Y++      AR+ F  MA      D V+W  ++  +A+SG 
Sbjct: 66  FDAMPPGRTTFHWNALISAYSSGCDPDAARDAFARMAAAGTRPDAVTWTALLSAHARSGK 125

Query: 166 VEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTR--QVHGQVLVTGFLSN-VVI 222
             + L+ +  ++R     N  S A  L+ C    +L L +   +HG  +V G +   + +
Sbjct: 126 HADVLQLFGEMQRSGCEGNAESMAVALSACPYAGDLALAKGKAIHGCGVVKGLMHGYLFV 185

Query: 223 SSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPE--- 279
           ++S++  Y K GE+ DA++ F +  A++ +TW T+++ YA  G  + A  +  +M +   
Sbjct: 186 TNSLICMYGKLGEMDDAKKAFRDATAKNTVTWNTLITSYAAAGLCDEALDVLAQMEQIGG 245

Query: 280 ---KNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHG 336
               N VSW+ +I G+  +G   +ALELF RM    + PN  T ++ L AC  +++L+ G
Sbjct: 246 TVAPNVVSWSAVIGGFASSGDTDRALELFRRMQQQWLSPNVVTMATVLSACVDLLALRLG 305

Query: 337 KQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQ 396
           +++HG  ++     +++V + LI+MY+KCG ++  R+VFD    ++  + WN+M++    
Sbjct: 306 RELHGHAMKAELDRHSLVENGLINMYAKCGKVSGARKVFDGMKTRD-LISWNSMLAGYGM 364

Query: 397 HGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQE 456
           HG  ++A+ LF DM  ++V+PD +T   +L+AC H+G V EG   F+ M     I P+ E
Sbjct: 365 HGLCDEALALFTDMAGATVEPDGVTFVAVLSACGHAGRVTEGRRLFDRMVRAHKISPSME 424

Query: 457 HHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQ 516
           H+ C++ LL +AG        +E MP   D  +W AL   CRIHG+  M    +  ++  
Sbjct: 425 HYTCMVYLLGRAGLLRDASELVETMPVRPDLCVWGALLNSCRIHGDAAMAEATIANVLQS 484

Query: 517 NPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAF---SVS 573
             QS+  H L++++Y+  G     +KVR +  E   +K    SWIE++NKV AF   S  
Sbjct: 485 EDQSTGNHMLITNLYAMCGMWDESKKVRVMTKEAGLRKNPGQSWIEVDNKVVAFAAGSAP 544

Query: 574 DSLHPMRDVLYSVLEQLAGQMGED 597
            +L    DV + +L+ L  +M ++
Sbjct: 545 PNLTGAEDV-FGMLDDLYAEMEDE 567



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 66/250 (26%), Positives = 115/250 (46%), Gaps = 37/250 (14%)

Query: 29  SKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTT 88
           S G    A+     + Q+ +     T+A +L  C +  +L+LG+ +H H  +       +
Sbjct: 263 SSGDTDRALELFRRMQQQWLSPNVVTMATVLSACVDLLALRLGRELHGH-AMKAELDRHS 321

Query: 89  FLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMA-- 146
            + N LI+MY KCG    ARKVFD +  ++L S+N+ML+GY   G+   A  LF +MA  
Sbjct: 322 LVENGLINMYAKCGKVSGARKVFDGMKTRDLISWNSMLAGYGMHGLCDEALALFTDMAGA 381

Query: 147 --ERDVVSWNTMIIGYAKSGAVEEGLKFY-KVLRRFSISCNEFSF---------AGILTI 194
             E D V++  ++     +G V EG + + +++R   IS +   +         AG+L  
Sbjct: 382 TVEPDGVTFVAVLSACGHAGRVTEGRRLFDRMVRAHKISPSMEHYTCMVYLLGRAGLLRD 441

Query: 195 CVKLEELKLTR-------------QVHGQ-VLVTGFLSNVVISSS--------IVDAYAK 232
             +L E    R             ++HG   +    ++NV+ S          I + YA 
Sbjct: 442 ASELVETMPVRPDLCVWGALLNSCRIHGDAAMAEATIANVLQSEDQSTGNHMLITNLYAM 501

Query: 233 CGELSDARRL 242
           CG   +++++
Sbjct: 502 CGMWDESKKV 511


>gi|413943926|gb|AFW76575.1| hypothetical protein ZEAMMB73_444227 [Zea mays]
          Length = 869

 Score =  301 bits (771), Expect = 6e-79,   Method: Compositional matrix adjust.
 Identities = 175/571 (30%), Positives = 287/571 (50%), Gaps = 46/571 (8%)

Query: 27  LISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTP 86
           L+  G+  EAI  +  +  RG+R    T A  L  C++ + L LG+ +H ++        
Sbjct: 246 LVQSGRCGEAIEVIYDMVARGVRPDGITFASALPACSQLEMLSLGREMHAYVLKDSDLAA 305

Query: 87  TTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMA 146
            +F+++ L+ MY        AR+VFD +P            G+  LG+            
Sbjct: 306 NSFVASALVDMYASHERVGVARRVFDMVP-----------GGHRQLGL------------ 342

Query: 147 ERDVVSWNTMIIGYAKSGAVEEGLK-FYKVLRRFSISCNEFSFAGILTICVKLEELKLTR 205
                 WN M+ GYA++G  EE L+ F ++     +  +E + AG+L  C + E      
Sbjct: 343 ------WNAMVCGYAQAGMDEEALELFARMEAEAGVVPSETTIAGVLPACARSETFAGKE 396

Query: 206 QVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLG 265
            VHG VL  G   N  + ++++D YA+ G++  AR +F   + RDV++W T+++G    G
Sbjct: 397 AVHGYVLKRGMADNPFVQNALMDLYARLGDMEAARWIFAAIEPRDVVSWNTLITGCVVQG 456

Query: 266 DMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLC 325
            +  A +L  EM ++   +  T     T +G+     E         + PN  T  + L 
Sbjct: 457 HIHDAFQLVREMQQQGRFTDAT-----TEDGIAGTDEE--------PVVPNNVTLMTLLP 503

Query: 326 ACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSM 385
            CA + +   GK++HG+ +R    S+  V S+L+DMY+KCGCL   R VFD    K N +
Sbjct: 504 GCAMLAAPAKGKEIHGYAMRHALDSDIAVGSALVDMYAKCGCLALSRAVFDRLP-KRNVI 562

Query: 386 LWNTMISALTQHGYDEQAIRLFHDMVRSS-VKPDKITLAVILNACTHSGLVQEGLTYFES 444
            WN +I A   HG  ++AI LF  MV S+  KP+++T    L AC+HSG+V  G+  F S
Sbjct: 563 TWNVLIMAYGMHGLGDEAIALFDRMVMSNEAKPNEVTFIAALAACSHSGMVDRGMELFHS 622

Query: 445 MTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKM-PYEHDSYLWNALHGVCRIHGNI 503
           M  + G+ P  + HAC +++L +AG  D+  + +  M P E     W++  G CR+H N+
Sbjct: 623 MKRNHGVQPTPDLHACAVDILGRAGRLDEAYSIITSMEPGEQQVSAWSSFLGACRLHRNV 682

Query: 504 DMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEI 563
            +G    ++L    P  ++ + LL +IYSA G      +VR  + +R   KE   SWIE+
Sbjct: 683 PLGEIAAERLFQLEPDEASHYVLLCNIYSAAGLWEKSSEVRNRMRQRGVSKEPGCSWIEL 742

Query: 564 ENKVHAFSVSDSLHPMRDVLYSVLEQLAGQM 594
           +  +H F   +S HP   ++++ ++ L  +M
Sbjct: 743 DGVIHRFMAGESAHPESTLVHAHMDALWERM 773



 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 108/431 (25%), Positives = 192/431 (44%), Gaps = 73/431 (16%)

Query: 120 FSYNNMLSGYANLGMMKHARNLFDNMAERD-----VVSWNTMIIGYAKSGAVEEGLK-FY 173
           F++N +LS YA LG++  A+ LF ++   D     VV+WNTM+    +SG   E ++  Y
Sbjct: 201 FAFNALLSMYARLGLVDDAQMLFGSVDTTDSPGGGVVTWNTMVSLLVQSGRCGEAIEVIY 260

Query: 174 KVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLV-TGFLSNVVISSSIVDAYAK 232
            ++ R  +  +  +FA  L  C +LE L L R++H  VL  +   +N  ++S++VD YA 
Sbjct: 261 DMVAR-GVRPDGITFASALPACSQLEMLSLGREMHAYVLKDSDLAANSFVASALVDMYAS 319

Query: 233 CGELSDARRLFDETDA--RDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIA 290
              +  ARR+FD      R +  W  MV GYA+ G                         
Sbjct: 320 HERVGVARRVFDMVPGGHRQLGLWNAMVCGYAQAG------------------------- 354

Query: 291 GYTRNGLGQKALELFTRMMI-LRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFR 349
                 + ++ALELF RM     + P++ T +  L ACA   +    + VHG++++    
Sbjct: 355 ------MDEEALELFARMEAEAGVVPSETTIAGVLPACARSETFAGKEAVHGYVLKRGMA 408

Query: 350 SNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHD 409
            N  V ++L+D+Y++ G +   R +F   + + + + WNT+I+     G+   A +L  +
Sbjct: 409 DNPFVQNALMDLYARLGDMEAARWIFAAIEPR-DVVSWNTLITGCVVQGHIHDAFQLVRE 467

Query: 410 MVRSS------------------VKPDKITLAVILNACT-----HSGLVQEGLTYFESMT 446
           M +                    V P+ +TL  +L  C        G    G     ++ 
Sbjct: 468 MQQQGRFTDATTEDGIAGTDEEPVVPNNVTLMTLLPGCAMLAAPAKGKEIHGYAMRHALD 527

Query: 447 HDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMG 506
            D+ +       + L+++ A+ GC        +++P + +   WN L     +HG  D  
Sbjct: 528 SDIAV------GSALVDMYAKCGCLALSRAVFDRLP-KRNVITWNVLIMAYGMHGLGDEA 580

Query: 507 RKVVDQLIDQN 517
             + D+++  N
Sbjct: 581 IALFDRMVMSN 591



 Score =  135 bits (341), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 109/413 (26%), Positives = 185/413 (44%), Gaps = 46/413 (11%)

Query: 123 NNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSIS 182
           N +L+ YA  G +  A  LF+ M  RD V++N++I   A        L     LR   + 
Sbjct: 100 NALLTAYARCGDLTAALALFNAMPSRDAVTFNSLI---AALCLFRRWLPALDALRDMLLE 156

Query: 183 ---CNEFSFAGILTICVKL-EELKLTRQVHGQVLVTGFLSN--VVISSSIVDAYAKCGEL 236
               + F+   +L  C  L E+L+L R+ H   L  GFL        ++++  YA+ G +
Sbjct: 157 GHPLSSFTLVSVLLACSHLAEDLRLGREAHAFALKNGFLDGDERFAFNALLSMYARLGLV 216

Query: 237 SDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNG 296
            DA+ LF   D  D                           P    V+W T+++   ++G
Sbjct: 217 DDAQMLFGSVDTTDS--------------------------PGGGVVTWNTMVSLLVQSG 250

Query: 297 LGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIR-TNFRSNTIVM 355
              +A+E+   M+   +RP+  TF+S L AC+ +  L  G+++H ++++ ++  +N+ V 
Sbjct: 251 RCGEAIEVIYDMVARGVRPDGITFASALPACSQLEMLSLGREMHAYVLKDSDLAANSFVA 310

Query: 356 SSLIDMYSKCGCLNDGRQVFDLTDNKENSM-LWNTMISALTQHGYDEQAIRLFHDM-VRS 413
           S+L+DMY+    +   R+VFD+       + LWN M+    Q G DE+A+ LF  M   +
Sbjct: 311 SALVDMYASHERVGVARRVFDMVPGGHRQLGLWNAMVCGYAQAGMDEEALELFARMEAEA 370

Query: 414 SVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAG---C 470
            V P + T+A +L AC  S     G           G+  N      L++L A+ G    
Sbjct: 371 GVVPSETTIAGVLPACARSETFA-GKEAVHGYVLKRGMADNPFVQNALMDLYARLGDMEA 429

Query: 471 SDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSAT 523
           +  +   +E      D   WN L   C + G+I    ++V ++  Q   + AT
Sbjct: 430 ARWIFAAIEP----RDVVSWNTLITGCVVQGHIHDAFQLVREMQQQGRFTDAT 478


>gi|242059435|ref|XP_002458863.1| hypothetical protein SORBIDRAFT_03g041710 [Sorghum bicolor]
 gi|241930838|gb|EES03983.1| hypothetical protein SORBIDRAFT_03g041710 [Sorghum bicolor]
          Length = 544

 Score =  301 bits (771), Expect = 6e-79,   Method: Compositional matrix adjust.
 Identities = 180/514 (35%), Positives = 275/514 (53%), Gaps = 44/514 (8%)

Query: 55  LAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFL-SNHLISMYFKCGSDVDARKVFDK 113
           L  +L+  A +   + G    LH +  +       L    ++SMY KCG+  DAR+ FD+
Sbjct: 57  LPILLKAAATASPAEPGLGKSLHAEALKSAFARDLLVGTTIVSMYCKCGALADARRAFDE 116

Query: 114 IPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFY 173
           +P +N+ SYN +L+GYA  G M  A  LF  M     V+W T+I G+AK G + E  +++
Sbjct: 117 MPDRNVISYNALLAGYAAAGDMDGALALFGGMRSWTYVTWATLIRGFAKKGDMAEARRWF 176

Query: 174 KVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKC 233
                      E +  G+ T+            V   VLV G++S               
Sbjct: 177 -----------ETTPPGMRTV------------VTWTVLVHGYVS--------------A 199

Query: 234 GELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYT 293
           G++  AR +FD   AR+   W++MV+GY K G+ E A  +F+ +P +N V+W  LIAGY 
Sbjct: 200 GDMEAAREVFDRMPARNAFVWSSMVTGYFKAGNAEEAQAVFHRIPTRNLVNWNALIAGYA 259

Query: 294 RNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTI 353
           + G  +KALE F  M+  R++P++ T +S L ACA + SL+ GK+VH F+ R + R N  
Sbjct: 260 QIGCSEKALEAFDSMLQERVKPDEFTMASLLSACAQLGSLEQGKKVHDFINREHIRKNHF 319

Query: 354 VMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRS 413
           V++ LIDMY+KCG L   R +FD    K N+  WNTMISAL  HG  ++A+ LF  M  S
Sbjct: 320 VLNGLIDMYAKCGDLVYARYIFDGMRWK-NTECWNTMISALASHGRSDEALHLFFQMEHS 378

Query: 414 SVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQ 473
              P+ IT+  +L ACTH G V EGL  F  +    G+    EH+ CL++LL +AG   +
Sbjct: 379 GQTPNTITVLAVLGACTHGGFVDEGLRIFNKLD-AYGVEAGVEHYGCLVDLLGRAGKLKE 437

Query: 474 LMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLID----QNPQSSATHGLLSS 529
               ++ MP E +  +W +L G CR+HG+ +M R V D++          + A + +LS+
Sbjct: 438 AYEIVKNMPEEPNEVIWGSLLGACRVHGDAEMSRLVTDEIHRLHSVHASSNDAEYIMLSN 497

Query: 530 IYSALGKGRLVEKVRQLINERQFKKEQAISWIEI 563
           I +A  +    E++R+ +     +K  A S +E+
Sbjct: 498 IMAASKRWEQAEQIRRKMARHGVEKTPACSSLEL 531



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 73/273 (26%), Positives = 126/273 (46%), Gaps = 14/273 (5%)

Query: 10  INRKNLPN-NCLIQSFLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSL 68
           I  +NL N N LI  +  +   G   +A+ + D + Q  ++    T+A +L  CA+  SL
Sbjct: 243 IPTRNLVNWNALIAGYAQI---GCSEKALEAFDSMLQERVKPDEFTMASLLSACAQLGSL 299

Query: 69  KLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSG 128
           + GK+VH  +     +    F+ N LI MY KCG  V AR +FD +  KN   +N M+S 
Sbjct: 300 EQGKKVHDFINREHIRK-NHFVLNGLIDMYAKCGDLVYARYIFDGMRWKNTECWNTMISA 358

Query: 129 YANLGMMKHARNLFDNMAERDVVSWNTMII-----GYAKSGAVEEGLKFYKVLRRFSISC 183
            A+ G    A +LF  M E    + NT+ +          G V+EGL+ +  L  + +  
Sbjct: 359 LASHGRSDEALHLFFQM-EHSGQTPNTITVLAVLGACTHGGFVDEGLRIFNKLDAYGVEA 417

Query: 184 NEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLF 243
               +  ++ +  +  +LK   ++   V       N VI  S++ A    G+   +R + 
Sbjct: 418 GVEHYGCLVDLLGRAGKLKEAYEI---VKNMPEEPNEVIWGSLLGACRVHGDAEMSRLVT 474

Query: 244 DETDARDVLTWTTMVSGYAKLGDMESASKLFNE 276
           DE      +  ++  + Y  L ++ +ASK + +
Sbjct: 475 DEIHRLHSVHASSNDAEYIMLSNIMAASKRWEQ 507


>gi|15232837|ref|NP_186850.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75193830|sp|Q9S7F4.1|PP206_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At2g01510
 gi|6091739|gb|AAF03451.1|AC010797_27 hypothetical protein [Arabidopsis thaliana]
 gi|6513930|gb|AAF14834.1|AC011664_16 hypothetical protein [Arabidopsis thaliana]
 gi|332640228|gb|AEE73749.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 825

 Score =  301 bits (771), Expect = 7e-79,   Method: Compositional matrix adjust.
 Identities = 159/481 (33%), Positives = 263/481 (54%), Gaps = 33/481 (6%)

Query: 123 NNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSIS 182
           N +L  Y+    +   R LFD M E D VS+N +I  Y+++   E  L F++ ++     
Sbjct: 289 NQILDFYSKHDRVLETRMLFDEMPELDFVSYNVVISSYSQADQYEASLHFFREMQCMGFD 348

Query: 183 CNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRL 242
              F FA +L+I   L  L++ RQ+H Q L+    S + + +S+VD YAKC        +
Sbjct: 349 RRNFPFATMLSIAANLSSLQMGRQLHCQALLATADSILHVGNSLVDMYAKC-------EM 401

Query: 243 FDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKAL 302
           F+E                        A  +F  +P++  VSWT LI+GY + GL    L
Sbjct: 402 FEE------------------------AELIFKSLPQRTTVSWTALISGYVQKGLHGAGL 437

Query: 303 ELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMY 362
           +LFT+M    +R +Q TF++ L A AS  SL  GKQ+H F+IR+    N    S L+DMY
Sbjct: 438 KLFTKMRGSNLRADQSTFATVLKASASFASLLLGKQLHAFIIRSGNLENVFSGSGLVDMY 497

Query: 363 SKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITL 422
           +KCG + D  QVF+   ++ N++ WN +ISA   +G  E AI  F  M+ S ++PD +++
Sbjct: 498 AKCGSIKDAVQVFEEMPDR-NAVSWNALISAHADNGDGEAAIGAFAKMIESGLQPDSVSI 556

Query: 423 AVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMP 482
             +L AC+H G V++G  YF++M+   GI P ++H+AC+++LL + G   +    +++MP
Sbjct: 557 LGVLTACSHCGFVEQGTEYFQAMSPIYGITPKKKHYACMLDLLGRNGRFAEAEKLMDEMP 616

Query: 483 YEHDSYLWNALHGVCRIHGNIDMGRKVVDQLID-QNPQSSATHGLLSSIYSALGKGRLVE 541
           +E D  +W+++   CRIH N  +  +  ++L   +  + +A +  +S+IY+A G+   V 
Sbjct: 617 FEPDEIMWSSVLNACRIHKNQSLAERAAEKLFSMEKLRDAAAYVSMSNIYAAAGEWEKVR 676

Query: 542 KVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQMGEDAPSL 601
            V++ + ER  KK  A SW+E+ +K+H FS +D  HP  D +   + +L  ++  +    
Sbjct: 677 DVKKAMRERGIKKVPAYSWVEVNHKIHVFSSNDQTHPNGDEIVRKINELTAEIEREGYKP 736

Query: 602 D 602
           D
Sbjct: 737 D 737



 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 91/323 (28%), Positives = 157/323 (48%), Gaps = 34/323 (10%)

Query: 91  SNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDV 150
           SN ++    + G    ARKV+D++P KN  S N M+SG+   G +  AR+LFD M +R V
Sbjct: 51  SNFIVEDLLRRGQVSAARKVYDEMPHKNTVSTNTMISGHVKTGDVSSARDLFDAMPDRTV 110

Query: 151 VSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISC---NEFSFAGILTICVKLEELKLTRQV 207
           V+W  ++  YA++   +E  K ++ + R S SC   +  +F  +L  C          QV
Sbjct: 111 VTWTILMGWYARNSHFDEAFKLFRQMCR-SSSCTLPDHVTFTTLLPGCNDAVPQNAVGQV 169

Query: 208 HGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDM 267
           H   +  GF +N  ++ S V                             ++  Y ++  +
Sbjct: 170 HAFAVKLGFDTNPFLTVSNV-----------------------------LLKSYCEVRRL 200

Query: 268 ESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCAC 327
           + A  LF E+PEK+ V++ TLI GY ++GL  +++ LF +M     +P+  TFS  L A 
Sbjct: 201 DLACVLFEEIPEKDSVTFNTLITGYEKDGLYTESIHLFLKMRQSGHQPSDFTFSGVLKAV 260

Query: 328 ASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLW 387
             +     G+Q+H   + T F  +  V + ++D YSK   + + R +FD    + + + +
Sbjct: 261 VGLHDFALGQQLHALSVTTGFSRDASVGNQILDFYSKHDRVLETRMLFDEMP-ELDFVSY 319

Query: 388 NTMISALTQHGYDEQAIRLFHDM 410
           N +IS+ +Q    E ++  F +M
Sbjct: 320 NVVISSYSQADQYEASLHFFREM 342



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 71/229 (31%), Positives = 124/229 (54%), Gaps = 5/229 (2%)

Query: 204 TRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAK 263
           TR+V  +++ TGF ++   S+ IV+   + G++S AR+++DE   ++ ++  TM+SG+ K
Sbjct: 32  TRRVDARIIKTGFDTDTCRSNFIVEDLLRRGQVSAARKVYDEMPHKNTVSTNTMISGHVK 91

Query: 264 LGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILR--IRPNQHTFS 321
            GD+ SA  LF+ MP++  V+WT L+  Y RN    +A +LF +M        P+  TF+
Sbjct: 92  TGDVSSARDLFDAMPDRTVVTWTILMGWYARNSHFDEAFKLFRQMCRSSSCTLPDHVTFT 151

Query: 322 SCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGC--LNDGRQVFDLTD 379
           + L  C   V      QVH F ++  F +N  +  S + + S C    L+    +F+   
Sbjct: 152 TLLPGCNDAVPQNAVGQVHAFAVKLGFDTNPFLTVSNVLLKSYCEVRRLDLACVLFEEIP 211

Query: 380 NKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNA 428
            K +S+ +NT+I+   + G   ++I LF  M +S  +P   T + +L A
Sbjct: 212 EK-DSVTFNTLITGYEKDGLYTESIHLFLKMRQSGHQPSDFTFSGVLKA 259


>gi|356547111|ref|XP_003541961.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05750,
           chloroplastic-like [Glycine max]
          Length = 521

 Score =  301 bits (771), Expect = 7e-79,   Method: Compositional matrix adjust.
 Identities = 152/449 (33%), Positives = 256/449 (57%), Gaps = 5/449 (1%)

Query: 150 VVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKL---EELKLTRQ 206
           +VSW T I  Y KSG + +    +  +R  +I  N  +F  +L+ C        +     
Sbjct: 56  IVSWTTSIADYCKSGHLVKAASKFVQMREAAIEPNHITFITLLSACAHYPSRSSISFGTA 115

Query: 207 VHGQVLVTGF-LSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLG 265
           +H  V   G  +++V++ ++++D YAKCG +  AR  FD+   R++++W TM+ GY + G
Sbjct: 116 IHAHVRKLGLDINDVMVGTALIDMYAKCGRVESARLAFDQMGVRNLVSWNTMIDGYMRNG 175

Query: 266 DMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLC 325
             E A ++F+ +P KN +SWT LI G+ +    ++ALE F  M +  + P+  T  + + 
Sbjct: 176 KFEDALQVFDGLPVKNAISWTALIGGFVKKDYHEEALECFREMQLSGVAPDYVTVIAVIA 235

Query: 326 ACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSM 385
           ACA++ +L  G  VH  ++  +FR+N  V +SLIDMYS+CGC++  RQVFD    +   +
Sbjct: 236 ACANLGTLGLGLWVHRLVMTQDFRNNVKVSNSLIDMYSRCGCIDLARQVFDRMPQR-TLV 294

Query: 386 LWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESM 445
            WN++I     +G  ++A+  F+ M     KPD ++    L AC+H+GL+ EGL  FE M
Sbjct: 295 SWNSIIVGFAVNGLADEALSYFNSMQEEGFKPDGVSYTGALMACSHAGLIGEGLRIFEHM 354

Query: 446 THDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDM 505
                I+P  EH+ CL++L ++AG  ++ +N L+ MP + +  +  +L   CR  GNI +
Sbjct: 355 KRVRRILPRIEHYGCLVDLYSRAGRLEEALNVLKNMPMKPNEVILGSLLAACRTQGNIGL 414

Query: 506 GRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIEN 565
              V++ LI+ +    + + LLS+IY+A+GK     KVR+ + ER  +K+   S IEI++
Sbjct: 415 AENVMNYLIELDSGGDSNYVLLSNIYAAVGKWDGANKVRRRMKERGIQKKPGFSSIEIDS 474

Query: 566 KVHAFSVSDSLHPMRDVLYSVLEQLAGQM 594
            +H F   D  H  +D +Y+ LE L+ ++
Sbjct: 475 SIHKFVSGDKSHEEKDHIYAALEFLSFEL 503



 Score =  147 bits (371), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 102/401 (25%), Positives = 174/401 (43%), Gaps = 41/401 (10%)

Query: 5   FSPRGINRKNLPNNCLIQSFLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAE 64
            S R   + N P      S       G L +A S    + +  I     T   +L  CA 
Sbjct: 44  LSLRHTTKYNDPIVSWTTSIADYCKSGHLVKAASKFVQMREAAIEPNHITFITLLSACAH 103

Query: 65  ---SKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFS 121
                S+  G  +H H++          +   LI MY KCG    AR  FD++ V+NL S
Sbjct: 104 YPSRSSISFGTAIHAHVRKLGLDINDVMVGTALIDMYAKCGRVESARLAFDQMGVRNLVS 163

Query: 122 YNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSI 181
           +N M+ GY   G  + A  +FD +  ++ +SW  +I G+ K    EE L+ ++ ++   +
Sbjct: 164 WNTMIDGYMRNGKFEDALQVFDGLPVKNAISWTALIGGFVKKDYHEEALECFREMQLSGV 223

Query: 182 SCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARR 241
           + +  +   ++  C  L  L L   VH  V+   F +NV +S+S++D Y++CG +  AR+
Sbjct: 224 APDYVTVIAVIAACANLGTLGLGLWVHRLVMTQDFRNNVKVSNSLIDMYSRCGCIDLARQ 283

Query: 242 LFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEK----NPVSWTTLIAGYTRNGL 297
           +FD    R +++W +++ G+A  G  + A   FN M E+    + VS+T  +   +  GL
Sbjct: 284 VFDRMPQRTLVSWNSIIVGFAVNGLADEALSYFNSMQEEGFKPDGVSYTGALMACSHAGL 343

Query: 298 GQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSS 357
             + L +F                            +H K+V   L R            
Sbjct: 344 IGEGLRIF----------------------------EHMKRVRRILPRIEH------YGC 369

Query: 358 LIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHG 398
           L+D+YS+ G L +   V      K N ++  ++++A    G
Sbjct: 370 LVDLYSRAGRLEEALNVLKNMPMKPNEVILGSLLAACRTQG 410


>gi|357507465|ref|XP_003624021.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355499036|gb|AES80239.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 632

 Score =  301 bits (771), Expect = 7e-79,   Method: Compositional matrix adjust.
 Identities = 162/485 (33%), Positives = 281/485 (57%), Gaps = 23/485 (4%)

Query: 92  NHLISMYFKCGSDVDARKVF----DKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAE 147
           N +IS Y+KCG++ +A  +F    D+   +N+ ++  M++G+A  G +K AR  FD M E
Sbjct: 154 NVMISGYWKCGNEEEASTLFHVMGDQEISRNVITWTTMITGHAKKGNLKTARMYFDKMPE 213

Query: 148 RDVVSWNTMIIGYAKSGAVEEGLK-FYKVLRRFSISCNEFSFAGILTICVKLEELKLT-- 204
           R VVSWN M+ GYA+ GA EE ++ F  +L   ++  +E ++A +++ C  L +  L+  
Sbjct: 214 RSVVSWNAMLSGYAQGGAPEETIRLFNDMLSPGNVQPDETTWATVISSCSSLGDPCLSES 273

Query: 205 --RQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDA---RDVLTWTTMVS 259
             R++  +V   GF  N  + ++++D +AKCG L  A ++F++      R  + W  M+S
Sbjct: 274 IVRKLDDKV---GFRPNYFVKTALLDMHAKCGNLEAAHKIFEQLGVYKYRSSVPWNAMIS 330

Query: 260 GYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILR--IRPNQ 317
            YA++GD+ SA  LF++MP+++ VSW ++IAGYT+NG   KA++LF  M+      +P++
Sbjct: 331 AYARVGDLPSAKHLFDKMPQRDTVSWNSMIAGYTQNGESFKAIKLFEEMISSEDSRKPDE 390

Query: 318 HTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDL 377
            T  S   AC  +  L  G      L   + + +  V +SLI+MYS+CG + D   +F  
Sbjct: 391 VTMVSVFSACGHLGELGLGNWAVSILKVNHIQISISVYNSLINMYSRCGSMQDAVLIFQE 450

Query: 378 TDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQE 437
              ++  + +NT+IS   +HG+  ++I L   M    ++PD+IT   IL AC+H+GL+ E
Sbjct: 451 MATRD-LVSYNTLISGFAEHGHGMESIELLSKMKEDGIEPDRITYIAILTACSHAGLLDE 509

Query: 438 GLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVC 497
           G   FES+       P+ +H+AC+I++L +AG  ++ M  ++ MP E  + ++ +L    
Sbjct: 510 GQRLFESIK-----FPDVDHYACMIDMLGRAGRLEEAMKLIQSMPMEPHAGIYGSLLNAT 564

Query: 498 RIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQA 557
            IH  +++G     +L    P +S  + LLS+IY++ G+ +  +KVR  + ++  KK   
Sbjct: 565 SIHKQVELGELAAAKLFKVEPHNSGNYALLSNIYASAGRWKEGDKVRDTMRKQGVKKTTG 624

Query: 558 ISWIE 562
           +SW+E
Sbjct: 625 LSWLE 629



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 82/297 (27%), Positives = 139/297 (46%), Gaps = 72/297 (24%)

Query: 209 GQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDME 268
             VL +G+  +  + + I+  YAK G +  AR+LFDE   R V  W  M+SGY K G+ E
Sbjct: 108 AHVLKSGYDRDHYVRNGILGIYAKYGPIEFARKLFDEMPDRTVADWNVMISGYWKCGNEE 167

Query: 269 SASKL-----------------------------------FNEMPEKNPVSWTTLIAGYT 293
            AS L                                   F++MPE++ VSW  +++GY 
Sbjct: 168 EASTLFHVMGDQEISRNVITWTTMITGHAKKGNLKTARMYFDKMPERSVVSWNAMLSGYA 227

Query: 294 RNGLGQKALELFTRMMIL-RIRPNQHTFSSCLCACASIVSLKHGKQ-VHGFLIRTNFRSN 351
           + G  ++ + LF  M+    ++P++ T+++ + +C+S+      +  V     +  FR N
Sbjct: 228 QGGAPEETIRLFNDMLSPGNVQPDETTWATVISSCSSLGDPCLSESIVRKLDDKVGFRPN 287

Query: 352 TIVMSSLIDMYSKCGCLNDGRQVF-------------------------DLTDNKE---- 382
             V ++L+DM++KCG L    ++F                         DL   K     
Sbjct: 288 YFVKTALLDMHAKCGNLEAAHKIFEQLGVYKYRSSVPWNAMISAYARVGDLPSAKHLFDK 347

Query: 383 ----NSMLWNTMISALTQHGYDEQAIRLFHDMVRS--SVKPDKITLAVILNACTHSG 433
               +++ WN+MI+  TQ+G   +AI+LF +M+ S  S KPD++T+  + +AC H G
Sbjct: 348 MPQRDTVSWNSMIAGYTQNGESFKAIKLFEEMISSEDSRKPDEVTMVSVFSACGHLG 404



 Score =  125 bits (313), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 100/428 (23%), Positives = 199/428 (46%), Gaps = 53/428 (12%)

Query: 23  SFLSLISKGQLSEAISSL--DLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKL 80
           + LS  ++G   E    L  D+L+   ++    T A ++  C+      L + +   L  
Sbjct: 221 AMLSGYAQGGAPEETIRLFNDMLSPGNVQPDETTWATVISSCSSLGDPCLSESIVRKLDD 280

Query: 81  TQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPV---KNLFSYNNMLSGYANLGMMKH 137
                P  F+   L+ M+ KCG+   A K+F+++ V   ++   +N M+S YA +G +  
Sbjct: 281 KVGFRPNYFVKTALLDMHAKCGNLEAAHKIFEQLGVYKYRSSVPWNAMISAYARVGDLPS 340

Query: 138 ARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYK--VLRRFSISCNEFSFAGILTIC 195
           A++LFD M +RD VSWN+MI GY ++G   + +K ++  +    S   +E +   + + C
Sbjct: 341 AKHLFDKMPQRDTVSWNSMIAGYTQNGESFKAIKLFEEMISSEDSRKPDEVTMVSVFSAC 400

Query: 196 VKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWT 255
             L EL L       + V     ++ + +S+++ Y++CG + DA  +F E   RD++++ 
Sbjct: 401 GHLGELGLGNWAVSILKVNHIQISISVYNSLINMYSRCGSMQDAVLIFQEMATRDLVSYN 460

Query: 256 TMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRP 315
           T++SG+A+                               +G G +++EL ++M    I P
Sbjct: 461 TLISGFAE-------------------------------HGHGMESIELLSKMKEDGIEP 489

Query: 316 NQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVF 375
           ++ T+ + L AC+    L  G++    L  +    +    + +IDM  + G L +  ++ 
Sbjct: 490 DRITYIAILTACSHAGLLDEGQR----LFESIKFPDVDHYACMIDMLGRAGRLEEAMKLI 545

Query: 376 DLTDNKENSMLWNTMISALTQHGYDE----QAIRLFHDMVRSSVKP-DKITLAVILNACT 430
                + ++ ++ ++++A + H   E     A +LF       V+P +    A++ N   
Sbjct: 546 QSMPMEPHAGIYGSLLNATSIHKQVELGELAAAKLF------KVEPHNSGNYALLSNIYA 599

Query: 431 HSGLVQEG 438
            +G  +EG
Sbjct: 600 SAGRWKEG 607



 Score = 52.8 bits (125), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 51/240 (21%), Positives = 104/240 (43%), Gaps = 21/240 (8%)

Query: 285 WTTLIAGYTRNGL-GQKALELFTRMMI-LRIRPNQHTFSSCL--CACASIVSLKHGKQVH 340
           +T ++  Y++ G+  Q  + LF  M+    I+PN   +S  +      S++ L H     
Sbjct: 55  FTFMLKYYSQIGVHSQVFVSLFKHMLQHCDIKPNASFYSVMMKSAGSESMLFLAH----- 109

Query: 341 GFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYD 400
             ++++ +  +  V + ++ +Y+K G +   R++FD   ++  +  WN MIS   + G +
Sbjct: 110 --VLKSGYDRDHYVRNGILGIYAKYGPIEFARKLFDEMPDRTVAD-WNVMISGYWKCGNE 166

Query: 401 EQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHAC 460
           E+A  LFH M    +  + IT   ++      G ++    YF+ M     +  N      
Sbjct: 167 EEASTLFHVMGDQEISRNVITWTTMITGHAKKGNLKTARMYFDKMPERSVVSWN-----A 221

Query: 461 LIELLAQAGCSDQLMNQLEKM----PYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQ 516
           ++   AQ G  ++ +     M      + D   W  +   C   G+  +   +V +L D+
Sbjct: 222 MLSGYAQGGAPEETIRLFNDMLSPGNVQPDETTWATVISSCSSLGDPCLSESIVRKLDDK 281


>gi|296082276|emb|CBI21281.3| unnamed protein product [Vitis vinifera]
          Length = 785

 Score =  301 bits (771), Expect = 7e-79,   Method: Compositional matrix adjust.
 Identities = 161/482 (33%), Positives = 267/482 (55%), Gaps = 33/482 (6%)

Query: 116 VKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKV 175
           V N+F  N +L  Y+    +  AR LFD M E+D VS+N +I GYA  G  +     ++ 
Sbjct: 242 VWNVFVSNALLDFYSKHDSVIDARKLFDEMPEQDGVSYNVIISGYAWDGKHKYAFDLFRE 301

Query: 176 LRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGE 235
           L+  +    +F FA +L+I     + ++ RQ+H Q +VT   S +++ +S+VD YA    
Sbjct: 302 LQFTAFDRKQFPFATMLSIASNTLDWEMGRQIHAQTIVTTADSEILVGNSLVDMYA---- 357

Query: 236 LSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRN 295
                                      K G  E A  +F  +  ++ V WT +I+ Y + 
Sbjct: 358 ---------------------------KCGKFEEAEMIFTNLTHRSAVPWTAMISAYVQK 390

Query: 296 GLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVM 355
           G  ++ L+LF +M    +  +Q TF+S L A ASI SL  GKQ+H F+I++ F SN    
Sbjct: 391 GFYEEGLQLFNKMRQASVIADQATFASLLRASASIASLSLGKQLHSFIIKSGFMSNVFSG 450

Query: 356 SSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSV 415
           S+L+D+Y+KCG + D  Q F    ++ N + WN MISA  Q+G  E  ++ F +MV S +
Sbjct: 451 SALLDVYAKCGSIKDAVQTFQEMPDR-NIVSWNAMISAYAQNGEAEATLKSFKEMVLSGL 509

Query: 416 KPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLM 475
           +PD ++   +L+AC+HSGLV+EGL +F SMT    + P +EH+A ++++L ++G  ++  
Sbjct: 510 QPDSVSFLGVLSACSHSGLVEEGLWHFNSMTQIYKLDPRREHYASVVDMLCRSGRFNEAE 569

Query: 476 NQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLID-QNPQSSATHGLLSSIYSAL 534
             + +MP + D  +W+++   CRIH N ++ R+  DQL + +  + +A +  +S+IY+A 
Sbjct: 570 KLMAEMPIDPDEIMWSSVLNACRIHKNQELARRAADQLFNMEELRDAAPYVNMSNIYAAA 629

Query: 535 GKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQM 594
           G+   V KV + + +R  KK  A SW+EI+++ H FS +D  HP  + +   ++ L   M
Sbjct: 630 GQWENVSKVHKAMRDRGVKKLPAYSWVEIKHETHMFSANDRCHPQIEEIRKKIDMLTKTM 689

Query: 595 GE 596
            E
Sbjct: 690 EE 691



 Score =  199 bits (507), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 135/482 (28%), Positives = 227/482 (47%), Gaps = 42/482 (8%)

Query: 86  PTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNM 145
           P T  SN  +  + K G    AR++F+K+P KN  S N M+SGY   G +  AR LFD M
Sbjct: 45  PDTSRSNFRVGNFLKNGELSQARQLFEKMPHKNTVSTNMMISGYVKSGNLGEARKLFDGM 104

Query: 146 AERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTR 205
            ER  V+W  +I GY++    +E  + +  ++R     +  +F  +L+ C   E      
Sbjct: 105 VERTAVTWTILIGGYSQLNQFKEAFELFVQMQRCGTEPDYVTFVTLLSGCNGHEMGNQIT 164

Query: 206 QVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLT------------ 253
           QV  Q++  G+ S +++ +++VD+Y K   L  A +LF E    D  T            
Sbjct: 165 QVQTQIIKLGYDSRLIVGNTLVDSYCKSNRLDLACQLFKEMPEIDSFTFAAVLCANIGLD 224

Query: 254 ------------------WTTMVSG-----YAKLGDMESASKLFNEMPEKNPVSWTTLIA 290
                             W   VS      Y+K   +  A KLF+EMPE++ VS+  +I+
Sbjct: 225 DIVLGQQIHSFVIKTNFVWNVFVSNALLDFYSKHDSVIDARKLFDEMPEQDGVSYNVIIS 284

Query: 291 GYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRS 350
           GY  +G  + A +LF  +        Q  F++ L   ++ +  + G+Q+H   I T   S
Sbjct: 285 GYAWDGKHKYAFDLFRELQFTAFDRKQFPFATMLSIASNTLDWEMGRQIHAQTIVTTADS 344

Query: 351 NTIVMSSLIDMYSKCGCLNDGRQVF-DLTDNKENSMLWNTMISALTQHGYDEQAIRLFHD 409
             +V +SL+DMY+KCG   +   +F +LT    +++ W  MISA  Q G+ E+ ++LF+ 
Sbjct: 345 EILVGNSLVDMYAKCGKFEEAEMIFTNLT--HRSAVPWTAMISAYVQKGFYEEGLQLFNK 402

Query: 410 MVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAG 469
           M ++SV  D+ T A +L A      +  G     S     G + N    + L+++ A+ G
Sbjct: 403 MRQASVIADQATFASLLRASASIASLSLG-KQLHSFIIKSGFMSNVFSGSALLDVYAKCG 461

Query: 470 CSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLI--DQNPQSSATHGLL 527
                +   ++MP + +   WNA+      +G  +   K   +++     P S +  G+L
Sbjct: 462 SIKDAVQTFQEMP-DRNIVSWNAMISAYAQNGEAEATLKSFKEMVLSGLQPDSVSFLGVL 520

Query: 528 SS 529
           S+
Sbjct: 521 SA 522



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 57/175 (32%), Positives = 93/175 (53%)

Query: 201 LKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSG 260
           L +   +  +++ TGF  +   S+  V  + K GELS AR+LF++   ++ ++   M+SG
Sbjct: 28  LNVVNNIDARIVKTGFDPDTSRSNFRVGNFLKNGELSQARQLFEKMPHKNTVSTNMMISG 87

Query: 261 YAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTF 320
           Y K G++  A KLF+ M E+  V+WT LI GY++    ++A ELF +M      P+  TF
Sbjct: 88  YVKSGNLGEARKLFDGMVERTAVTWTILIGGYSQLNQFKEAFELFVQMQRCGTEPDYVTF 147

Query: 321 SSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVF 375
            + L  C          QV   +I+  + S  IV ++L+D Y K   L+   Q+F
Sbjct: 148 VTLLSGCNGHEMGNQITQVQTQIIKLGYDSRLIVGNTLVDSYCKSNRLDLACQLF 202



 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 69/279 (24%), Positives = 131/279 (46%), Gaps = 16/279 (5%)

Query: 11  NRKNLPNNCLIQSFLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKL 70
           +R  +P   +I ++   + KG   E +   + + Q  +     T A +L+  A   SL L
Sbjct: 374 HRSAVPWTAMISAY---VQKGFYEEGLQLFNKMRQASVIADQATFASLLRASASIASLSL 430

Query: 71  GKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYA 130
           GK++H  + +        F  + L+ +Y KCGS  DA + F ++P +N+ S+N M+S YA
Sbjct: 431 GKQLHSFI-IKSGFMSNVFSGSALLDVYAKCGSIKDAVQTFQEMPDRNIVSWNAMISAYA 489

Query: 131 NLGMMKHARNLFDNMA----ERDVVSWNTMIIGYAKSGAVEEGL-KFYKVLRRFSISCNE 185
             G  +     F  M     + D VS+  ++   + SG VEEGL  F  + + + +    
Sbjct: 490 QNGEAEATLKSFKEMVLSGLQPDSVSFLGVLSACSHSGLVEEGLWHFNSMTQIYKLDPRR 549

Query: 186 FSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDA--YAKCGELSD--ARR 241
             +A ++ +  +        ++  ++ +     + ++ SS+++A    K  EL+   A +
Sbjct: 550 EHYASVVDMLCRSGRFNEAEKLMAEMPID---PDEIMWSSVLNACRIHKNQELARRAADQ 606

Query: 242 LFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEK 280
           LF+  + RD   +  M + YA  G  E+ SK+   M ++
Sbjct: 607 LFNMEELRDAAPYVNMSNIYAAAGQWENVSKVHKAMRDR 645


>gi|357127483|ref|XP_003565409.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15930-like [Brachypodium distachyon]
          Length = 552

 Score =  301 bits (770), Expect = 8e-79,   Method: Compositional matrix adjust.
 Identities = 158/478 (33%), Positives = 264/478 (55%), Gaps = 30/478 (6%)

Query: 129 YANLGMMKHARNLFDNMAERD---VVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNE 185
           YA  G    AR L D    R     V WN +I G+ +S             R+F +SC  
Sbjct: 64  YAARGDGAVARTLLDAWPARGGDTPVVWNALISGHRRS-------------RQFRLSCCS 110

Query: 186 F-------------SFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAK 232
           F             ++  +L+ C K + + L  QVH  V+ +G L ++ + ++++D YA+
Sbjct: 111 FVDMVRTGVVPTPVTYITVLSACGKDKYIWLGMQVHKCVVASGVLPDLKVGNALIDMYAE 170

Query: 233 CGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGY 292
           C E+  A  LF+  + R+ ++WT+++SG+ +LG ++ A  LF+ MPE++ VSWT +I GY
Sbjct: 171 CSEMDAAWELFEGMEVRNTVSWTSVISGFLRLGQVDQARTLFDCMPERDTVSWTAMIDGY 230

Query: 293 TRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNT 352
            + G  ++ALE+F  M   ++R ++ T  S + ACA + +L+ G+    ++ R   + +T
Sbjct: 231 VQAGQFREALEMFREMQFSKVRADEFTMVSVVTACAQLGALETGEWARIYMSRHGIKMDT 290

Query: 353 IVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVR 412
            V ++L+DMYSKCG +     VF     ++    W  +I  L  +G+ E+AI +F+ M+R
Sbjct: 291 FVGNALVDMYSKCGSIQQALGVFKEMYIRDK-FTWTAVILGLAVNGHGEEAINMFYRMLR 349

Query: 413 SSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSD 472
               PD++T   +L ACTH+GLV +G  +F SMT   GI PN  H  CLI+LL +AG   
Sbjct: 350 VFEAPDEVTFIGVLTACTHAGLVDKGRDFFLSMTGSYGIAPNVMHFGCLIDLLGRAGKLK 409

Query: 473 QLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYS 532
           + +  +  MP   +S +W  L   CR+HGN ++G+   + L++ + ++   + LLS++Y+
Sbjct: 410 EALETIGNMPMRPNSAIWGTLLAACRVHGNSEIGQLAAEHLLELDTENGMVYILLSNLYA 469

Query: 533 ALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQL 590
              +   V ++RQ+I E+  KKE   S IE+   +H F   D  HPM   +YS L+++
Sbjct: 470 KSNRWEDVRRLRQVIMEKGIKKEPGCSLIEMNGTIHEFIAGDRSHPMSKEIYSKLDKV 527



 Score =  155 bits (393), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 98/362 (27%), Positives = 164/362 (45%), Gaps = 37/362 (10%)

Query: 43  LAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCG 102
           + + G+     T   +L  C + K + LG +VH    +     P   + N LI MY +C 
Sbjct: 114 MVRTGVVPTPVTYITVLSACGKDKYIWLGMQVH-KCVVASGVLPDLKVGNALIDMYAECS 172

Query: 103 SDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAK 162
               A ++F+ + V+N  S+ +++SG+  LG +  AR LFD M ERD VSW  MI GY +
Sbjct: 173 EMDAAWELFEGMEVRNTVSWTSVISGFLRLGQVDQARTLFDCMPERDTVSWTAMIDGYVQ 232

Query: 163 SGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVI 222
           +G   E L+ ++ ++   +  +EF+   ++T C +L  L+        +   G   +  +
Sbjct: 233 AGQFREALEMFREMQFSKVRADEFTMVSVVTACAQLGALETGEWARIYMSRHGIKMDTFV 292

Query: 223 SSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNP 282
            +++VD Y+KCG +  A  +F E   RD  TWT ++ G A                    
Sbjct: 293 GNALVDMYSKCGSIQQALGVFKEMYIRDKFTWTAVILGLAV------------------- 333

Query: 283 VSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGF 342
                       NG G++A+ +F RM+ +   P++ TF   L AC     +  G+    F
Sbjct: 334 ------------NGHGEEAINMFYRMLRVFEAPDEVTFIGVLTACTHAGLVDKGRDF--F 379

Query: 343 LIRT---NFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGY 399
           L  T       N +    LID+  + G L +  +       + NS +W T+++A   HG 
Sbjct: 380 LSMTGSYGIAPNVMHFGCLIDLLGRAGKLKEALETIGNMPMRPNSAIWGTLLAACRVHGN 439

Query: 400 DE 401
            E
Sbjct: 440 SE 441



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 60/259 (23%), Positives = 111/259 (42%), Gaps = 11/259 (4%)

Query: 302 LELFTRMMILRIRPNQHTFSSCLCACASIVSLKH-GKQVHGFLIRTNFRSNTIVMSSLID 360
           L ++  M+    RP+ +TF   L A  +       G  VH  +++     N  V SSL+ 
Sbjct: 3   LRVYVGMLARGARPDAYTFPPLLKAVTAAAERGAVGDAVHAHVVKFGMELNAHVASSLVL 62

Query: 361 MYSKCGCLNDGRQVFDLTDNK--ENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPD 418
           MY+  G     R + D    +  +  ++WN +IS   +      +   F DMVR+ V P 
Sbjct: 63  MYAARGDGAVARTLLDAWPARGGDTPVVWNALISGHRRSRQFRLSCCSFVDMVRTGVVPT 122

Query: 419 KITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQL 478
            +T   +L+AC     +  G+   + +    G++P+ +    LI++ A+    D      
Sbjct: 123 PVTYITVLSACGKDKYIWLGMQVHKCVVAS-GVLPDLKVGNALIDMYAECSEMDAAWELF 181

Query: 479 EKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGR 538
           E M   +     + + G  R+ G +D  R + D + +++  S       + I   +  G+
Sbjct: 182 EGMEVRNTVSWTSVISGFLRL-GQVDQARTLFDCMPERDTVS-----WTAMIDGYVQAGQ 235

Query: 539 LVEKVRQLINERQFKKEQA 557
             E + ++  E QF K +A
Sbjct: 236 FREAL-EMFREMQFSKVRA 253



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 57/261 (21%), Positives = 119/261 (45%), Gaps = 10/261 (3%)

Query: 28  ISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPT 87
           +  GQ  EA+     +    +R    T+  ++  CA+  +L+ G+   +++     K   
Sbjct: 231 VQAGQFREALEMFREMQFSKVRADEFTMVSVVTACAQLGALETGEWARIYMSRHGIKM-D 289

Query: 88  TFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNM-- 145
           TF+ N L+ MY KCGS   A  VF ++ +++ F++  ++ G A  G  + A N+F  M  
Sbjct: 290 TFVGNALVDMYSKCGSIQQALGVFKEMYIRDKFTWTAVILGLAVNGHGEEAINMFYRMLR 349

Query: 146 --AERDVVSWNTMIIGYAKSGAVEEGLKFY-KVLRRFSISCNEFSFAGILTICVKLEELK 202
                D V++  ++     +G V++G  F+  +   + I+ N   F  ++ +  +  +LK
Sbjct: 350 VFEAPDEVTFIGVLTACTHAGLVDKGRDFFLSMTGSYGIAPNVMHFGCLIDLLGRAGKLK 409

Query: 203 LTRQVHGQVLV--TGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSG 260
              +  G + +     +   ++++  V   ++ G+L+    L  E D  + + +  + + 
Sbjct: 410 EALETIGNMPMRPNSAIWGTLLAACRVHGNSEIGQLAAEHLL--ELDTENGMVYILLSNL 467

Query: 261 YAKLGDMESASKLFNEMPEKN 281
           YAK    E   +L   + EK 
Sbjct: 468 YAKSNRWEDVRRLRQVIMEKG 488


>gi|147799187|emb|CAN74829.1| hypothetical protein VITISV_002140 [Vitis vinifera]
          Length = 542

 Score =  301 bits (770), Expect = 8e-79,   Method: Compositional matrix adjust.
 Identities = 172/566 (30%), Positives = 287/566 (50%), Gaps = 65/566 (11%)

Query: 26  SLISKGQLSEAISSLDLLAQRGI-RLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRK 84
            L+  G +         L + GI +    TL  +L  C + +   + K +H  + L   +
Sbjct: 15  GLLGNGDIEMGFRVFKQLYESGIYQFDQATLTTVLTACDKPEFCYVSKMIHSLVFLYGYE 74

Query: 85  TPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDN 144
              T + N LI+ YF+CG     R+V                               FD 
Sbjct: 75  REIT-VGNALITSYFRCGCCSSGRRV-------------------------------FDE 102

Query: 145 MAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLT 204
           M+E++VV+W  +I G ++    EE LK +  +R   +  N  ++   L  C  L+ ++  
Sbjct: 103 MSEKNVVTWTAVISGLSQGQFYEESLKLFGKMRDGPVDPNSLTYLSSLMACSGLQAIREG 162

Query: 205 RQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKL 264
           RQ+HG V   G   ++ I S+++D Y+KCG L                            
Sbjct: 163 RQIHGLVWKLGVHFDLCIESALMDMYSKCGSL---------------------------- 194

Query: 265 GDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCL 324
              E A K+F    E + VS T ++ G  +NG  ++++++F +M+   +  + +  S+ L
Sbjct: 195 ---EDAWKIFESAEEVDEVSMTVILVGLAQNGFEEESIQVFVKMVKNGVVIDPNMISAIL 251

Query: 325 CACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENS 384
                  SL  GKQ+H  +I+ +F SN  V + LI+MYSKCG L+D  ++F     + NS
Sbjct: 252 GVFGIDTSLALGKQIHSLIIKKSFGSNYFVNNGLINMYSKCGDLDDSIKIFCWMPQR-NS 310

Query: 385 MLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFES 444
           + WN+MI+A  +HG   +A++L+ +M    V P  +T   +L+AC H GLV++G+ + ES
Sbjct: 311 VSWNSMIAAFARHGNGSRALQLYEEMRLEGVWPTDVTFLSLLHACAHVGLVEKGMGFLES 370

Query: 445 MTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNID 504
           M  D GI P  EH+AC+++++ +AG  ++    +E++P +    +W AL G C IHGN +
Sbjct: 371 MAKDYGIGPRMEHYACVVDMMGRAGLLNEAKKFIERLPEKPGILVWQALLGACSIHGNSE 430

Query: 505 MGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIE 564
           MG+   +QL  Q P+S A + LL++IYS+ GK +   +  + + +    KE  ISWIEIE
Sbjct: 431 MGKYAANQLFLQAPESPAPYILLANIYSSEGKWKERARTIKKMKDMGVTKETGISWIEIE 490

Query: 565 NKVHAFSVSDSLHPMRDVLYSVLEQL 590
            ++H+F V D +HP  +++Y VL +L
Sbjct: 491 KQIHSFVVEDRMHPHAEIIYGVLGEL 516



 Score =  145 bits (365), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 96/360 (26%), Positives = 175/360 (48%), Gaps = 37/360 (10%)

Query: 145 MAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSI-SCNEFSFAGILTICVKLEELKL 203
           M  +D +SWN+ I G   +G +E G + +K L    I   ++ +   +LT C K E   +
Sbjct: 1   MPMKDTISWNSRISGLLGNGDIEMGFRVFKQLYESGIYQFDQATLTTVLTACDKPEFCYV 60

Query: 204 TRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAK 263
           ++ +H  V + G+   + + ++++ +Y +CG  S  RR+FDE   ++V+TWT ++SG ++
Sbjct: 61  SKMIHSLVFLYGYEREITVGNALITSYFRCGCCSSGRRVFDEMSEKNVVTWTAVISGLSQ 120

Query: 264 LGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSC 323
               E + KLF +M                R+G                + PN  T+ S 
Sbjct: 121 GQFYEESLKLFGKM----------------RDG---------------PVDPNSLTYLSS 149

Query: 324 LCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDN-KE 382
           L AC+ + +++ G+Q+HG + +     +  + S+L+DMYSKCG L D  ++F+  +   E
Sbjct: 150 LMACSGLQAIREGRQIHGLVWKLGVHFDLCIESALMDMYSKCGSLEDAWKIFESAEEVDE 209

Query: 383 NSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYF 442
            SM    ++  L Q+G++E++I++F  MV++ V  D   ++ IL        +  G    
Sbjct: 210 VSM--TVILVGLAQNGFEEESIQVFVKMVKNGVVIDPNMISAILGVFGIDTSLALG-KQI 266

Query: 443 ESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGN 502
            S+        N   +  LI + ++ G  D  +     MP + +S  WN++      HGN
Sbjct: 267 HSLIIKKSFGSNYFVNNGLINMYSKCGDLDDSIKIFCWMP-QRNSVSWNSMIAAFARHGN 325



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 86/395 (21%), Positives = 172/395 (43%), Gaps = 89/395 (22%)

Query: 23  SFLSLISKGQLSEAISSLDLLAQ-RGIRLPAETLAFI--LQQCAESKSLKLGKRVH---- 75
           + +S +S+GQ  E   SL L  + R   +   +L ++  L  C+  ++++ G+++H    
Sbjct: 113 AVISGLSQGQFYE--ESLKLFGKMRDGPVDPNSLTYLSSLMACSGLQAIREGRQIHGLVW 170

Query: 76  ---LHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANL 132
              +H  L         + + L+ MY KCGS  DA K+                      
Sbjct: 171 KLGVHFDLC--------IESALMDMYSKCGSLEDAWKI---------------------- 200

Query: 133 GMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGIL 192
                    F++  E D VS   +++G A++G  EE ++ +  + +  +  +    + IL
Sbjct: 201 ---------FESAEEVDEVSMTVILVGLAQNGFEEESIQVFVKMVKNGVVIDPNMISAIL 251

Query: 193 TICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVL 252
            +      L L +Q+H  ++   F SN  +++ +++ Y+KCG+L D+ ++F     R+ +
Sbjct: 252 GVFGIDTSLALGKQIHSLIIKKSFGSNYFVNNGLINMYSKCGDLDDSIKIFCWMPQRNSV 311

Query: 253 TWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILR 312
           +W +M++ +A                               R+G G +AL+L+  M +  
Sbjct: 312 SWNSMIAAFA-------------------------------RHGNGSRALQLYEEMRLEG 340

Query: 313 IRPNQHTFSSCLCACASIVSLKHGKQVHGFL--IRTNFRSNTIV--MSSLIDMYSKCGCL 368
           + P   TF S L ACA +  ++ G    GFL  +  ++     +   + ++DM  + G L
Sbjct: 341 VWPTDVTFLSLLHACAHVGLVEKGM---GFLESMAKDYGIGPRMEHYACVVDMMGRAGLL 397

Query: 369 NDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQA 403
           N+ ++  +    K   ++W  ++ A + HG  E  
Sbjct: 398 NEAKKFIERLPEKPGILVWQALLGACSIHGNSEMG 432



 Score = 68.9 bits (167), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 72/331 (21%), Positives = 139/331 (41%), Gaps = 56/331 (16%)

Query: 24  FLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQR 83
            + L   G   E+I     + + G+ +    ++ IL       SL LGK++H  L + + 
Sbjct: 216 LVGLAQNGFEEESIQVFVKMVKNGVVIDPNMISAILGVFGIDTSLALGKQIH-SLIIKKS 274

Query: 84  KTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFD 143
                F++N LI+MY KCG   D+ K+F  +P +N  S+N+M++ +A  G    A  L++
Sbjct: 275 FGSNYFVNNGLINMYSKCGDLDDSIKIFCWMPQRNSVSWNSMIAAFARHGNGSRALQLYE 334

Query: 144 NMAERDV----VSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLE 199
            M    V    V++ +++   A  G VE+G+ F +            S A    I  ++E
Sbjct: 335 EMRLEGVWPTDVTFLSLLHACAHVGLVEKGMGFLE------------SMAKDYGIGPRME 382

Query: 200 ELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDAR-DVLTWTTMV 258
                                   + +VD   + G L++A++  +    +  +L W  ++
Sbjct: 383 HY----------------------ACVVDMMGRAGLLNEAKKFIERLPEKPGILVWQALL 420

Query: 259 SGYAKLGDME----SASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIR 314
              +  G+ E    +A++LF + PE +P  +  L   Y+  G  ++      +M  + + 
Sbjct: 421 GACSIHGNSEMGKYAANQLFLQAPE-SPAPYILLANIYSSEGKWKERARTIKKMKDMGVT 479

Query: 315 PNQHTFSSCLCACASIVSLKHGKQVHGFLIR 345
                          I  ++  KQ+H F++ 
Sbjct: 480 KE-----------TGISWIEIEKQIHSFVVE 499


>gi|225450928|ref|XP_002280725.1| PREDICTED: pentatricopeptide repeat-containing protein At3g05340
           [Vitis vinifera]
          Length = 656

 Score =  301 bits (770), Expect = 8e-79,   Method: Compositional matrix adjust.
 Identities = 172/565 (30%), Positives = 287/565 (50%), Gaps = 65/565 (11%)

Query: 27  LISKGQLSEAISSLDLLAQRGI-RLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKT 85
           L+  G +         L + GI +    TL  +L  C + +   + K +H  + L   + 
Sbjct: 130 LLGNGDIEMGFRVFKQLYESGIYQFDQATLTTVLTACDKPEFCYVSKMIHSLVFLYGYER 189

Query: 86  PTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNM 145
             T + N LI+ YF+CG     R+V                               FD M
Sbjct: 190 EIT-VGNALITSYFRCGCCSSGRRV-------------------------------FDEM 217

Query: 146 AERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTR 205
           +E++VV+W  +I G ++    EE LK +  +R   +  N  ++   L  C  L+ ++  R
Sbjct: 218 SEKNVVTWTAVISGLSQGQFYEESLKLFGKMRDGPVDPNSLTYLSSLMACSGLQAIREGR 277

Query: 206 QVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLG 265
           Q+HG V   G   ++ I S+++D Y+KCG L                             
Sbjct: 278 QIHGLVWKLGVHFDLCIESALMDMYSKCGSL----------------------------- 308

Query: 266 DMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLC 325
             E A K+F    E + VS T ++ G  +NG  ++++++F +M+   +  + +  S+ L 
Sbjct: 309 --EDAWKIFESAEEVDEVSMTVILVGLAQNGFEEESIQVFVKMVKNGVVIDPNMISAILG 366

Query: 326 ACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSM 385
                 SL  GKQ+H  +I+ +F SN  V + LI+MYSKCG L+D  ++F     + NS+
Sbjct: 367 VFGIDTSLALGKQIHSLIIKKSFGSNYFVNNGLINMYSKCGDLDDSIKIFCWMPQR-NSV 425

Query: 386 LWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESM 445
            WN+MI+A  +HG   +A++L+ +M    V P  +T   +L+AC H GLV++G+ + ESM
Sbjct: 426 SWNSMIAAFARHGNGSRALQLYEEMRLEGVWPTDVTFLSLLHACAHVGLVEKGMGFLESM 485

Query: 446 THDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDM 505
             D GI P  EH+AC+++++ +AG  ++    +E++P +    +W AL G C IHGN +M
Sbjct: 486 AKDYGIGPRMEHYACVVDMMGRAGLLNEAKKFIERLPEKPGILVWQALLGACSIHGNSEM 545

Query: 506 GRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIEN 565
           G+   +QL  Q P+S A + LL++IYS+ GK +   +  + + +    KE  ISWIEIE 
Sbjct: 546 GKYAANQLFLQAPESPAPYILLANIYSSEGKWKERARTIKKMKDMGVTKETGISWIEIEK 605

Query: 566 KVHAFSVSDSLHPMRDVLYSVLEQL 590
           ++H+F V D +HP  +++Y VL +L
Sbjct: 606 QIHSFVVEDRMHPHAEIIYGVLGEL 630



 Score =  162 bits (411), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 104/383 (27%), Positives = 191/383 (49%), Gaps = 37/383 (9%)

Query: 122 YNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSI 181
           +N++LS Y+  G ++ A  +FD+M  +D +SWN+ I G   +G +E G + +K L    I
Sbjct: 92  WNSLLSMYSRCGELRDATKVFDHMPMKDTISWNSRISGLLGNGDIEMGFRVFKQLYESGI 151

Query: 182 -SCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDAR 240
              ++ +   +LT C K E   +++ +H  V + G+   + + ++++ +Y +CG  S  R
Sbjct: 152 YQFDQATLTTVLTACDKPEFCYVSKMIHSLVFLYGYEREITVGNALITSYFRCGCCSSGR 211

Query: 241 RLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQK 300
           R+FDE   ++V+TWT ++SG ++    E + KLF +M                R+G    
Sbjct: 212 RVFDEMSEKNVVTWTAVISGLSQGQFYEESLKLFGKM----------------RDG---- 251

Query: 301 ALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLID 360
                       + PN  T+ S L AC+ + +++ G+Q+HG + +     +  + S+L+D
Sbjct: 252 -----------PVDPNSLTYLSSLMACSGLQAIREGRQIHGLVWKLGVHFDLCIESALMD 300

Query: 361 MYSKCGCLNDGRQVFDLTDN-KENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDK 419
           MYSKCG L D  ++F+  +   E SM    ++  L Q+G++E++I++F  MV++ V  D 
Sbjct: 301 MYSKCGSLEDAWKIFESAEEVDEVSM--TVILVGLAQNGFEEESIQVFVKMVKNGVVIDP 358

Query: 420 ITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLE 479
             ++ IL        +  G     S+        N   +  LI + ++ G  D  +    
Sbjct: 359 NMISAILGVFGIDTSLALG-KQIHSLIIKKSFGSNYFVNNGLINMYSKCGDLDDSIKIFC 417

Query: 480 KMPYEHDSYLWNALHGVCRIHGN 502
            MP + +S  WN++      HGN
Sbjct: 418 WMP-QRNSVSWNSMIAAFARHGN 439



 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 56/189 (29%), Positives = 101/189 (53%), Gaps = 2/189 (1%)

Query: 251 VLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMI 310
           ++ W +++S Y++ G++  A+K+F+ MP K+ +SW + I+G   NG  +    +F ++  
Sbjct: 89  IVVWNSLLSMYSRCGELRDATKVFDHMPMKDTISWNSRISGLLGNGDIEMGFRVFKQLYE 148

Query: 311 LRI-RPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLN 369
             I + +Q T ++ L AC         K +H  +    +     V ++LI  Y +CGC +
Sbjct: 149 SGIYQFDQATLTTVLTACDKPEFCYVSKMIHSLVFLYGYEREITVGNALITSYFRCGCCS 208

Query: 370 DGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNAC 429
            GR+VFD    K N + W  +IS L+Q  + E++++LF  M    V P+ +T    L AC
Sbjct: 209 SGRRVFDEMSEK-NVVTWTAVISGLSQGQFYEESLKLFGKMRDGPVDPNSLTYLSSLMAC 267

Query: 430 THSGLVQEG 438
           +    ++EG
Sbjct: 268 SGLQAIREG 276



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 86/395 (21%), Positives = 172/395 (43%), Gaps = 89/395 (22%)

Query: 23  SFLSLISKGQLSEAISSLDLLAQ-RGIRLPAETLAFI--LQQCAESKSLKLGKRVH---- 75
           + +S +S+GQ  E   SL L  + R   +   +L ++  L  C+  ++++ G+++H    
Sbjct: 227 AVISGLSQGQFYE--ESLKLFGKMRDGPVDPNSLTYLSSLMACSGLQAIREGRQIHGLVW 284

Query: 76  ---LHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANL 132
              +H  L         + + L+ MY KCGS  DA K+                      
Sbjct: 285 KLGVHFDLC--------IESALMDMYSKCGSLEDAWKI---------------------- 314

Query: 133 GMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGIL 192
                    F++  E D VS   +++G A++G  EE ++ +  + +  +  +    + IL
Sbjct: 315 ---------FESAEEVDEVSMTVILVGLAQNGFEEESIQVFVKMVKNGVVIDPNMISAIL 365

Query: 193 TICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVL 252
            +      L L +Q+H  ++   F SN  +++ +++ Y+KCG+L D+ ++F     R+ +
Sbjct: 366 GVFGIDTSLALGKQIHSLIIKKSFGSNYFVNNGLINMYSKCGDLDDSIKIFCWMPQRNSV 425

Query: 253 TWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILR 312
           +W +M++ +A                               R+G G +AL+L+  M +  
Sbjct: 426 SWNSMIAAFA-------------------------------RHGNGSRALQLYEEMRLEG 454

Query: 313 IRPNQHTFSSCLCACASIVSLKHGKQVHGFL--IRTNFRSNTIV--MSSLIDMYSKCGCL 368
           + P   TF S L ACA +  ++ G    GFL  +  ++     +   + ++DM  + G L
Sbjct: 455 VWPTDVTFLSLLHACAHVGLVEKGM---GFLESMAKDYGIGPRMEHYACVVDMMGRAGLL 511

Query: 369 NDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQA 403
           N+ ++  +    K   ++W  ++ A + HG  E  
Sbjct: 512 NEAKKFIERLPEKPGILVWQALLGACSIHGNSEMG 546



 Score = 69.3 bits (168), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 72/331 (21%), Positives = 139/331 (41%), Gaps = 56/331 (16%)

Query: 24  FLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQR 83
            + L   G   E+I     + + G+ +    ++ IL       SL LGK++H  L + + 
Sbjct: 330 LVGLAQNGFEEESIQVFVKMVKNGVVIDPNMISAILGVFGIDTSLALGKQIH-SLIIKKS 388

Query: 84  KTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFD 143
                F++N LI+MY KCG   D+ K+F  +P +N  S+N+M++ +A  G    A  L++
Sbjct: 389 FGSNYFVNNGLINMYSKCGDLDDSIKIFCWMPQRNSVSWNSMIAAFARHGNGSRALQLYE 448

Query: 144 NMAERDV----VSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLE 199
            M    V    V++ +++   A  G VE+G+ F +            S A    I  ++E
Sbjct: 449 EMRLEGVWPTDVTFLSLLHACAHVGLVEKGMGFLE------------SMAKDYGIGPRME 496

Query: 200 ELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDAR-DVLTWTTMV 258
                                   + +VD   + G L++A++  +    +  +L W  ++
Sbjct: 497 HY----------------------ACVVDMMGRAGLLNEAKKFIERLPEKPGILVWQALL 534

Query: 259 SGYAKLGDME----SASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIR 314
              +  G+ E    +A++LF + PE +P  +  L   Y+  G  ++      +M  + + 
Sbjct: 535 GACSIHGNSEMGKYAANQLFLQAPE-SPAPYILLANIYSSEGKWKERARTIKKMKDMGVT 593

Query: 315 PNQHTFSSCLCACASIVSLKHGKQVHGFLIR 345
                          I  ++  KQ+H F++ 
Sbjct: 594 KE-----------TGISWIEIEKQIHSFVVE 613


>gi|218198855|gb|EEC81282.1| hypothetical protein OsI_24392 [Oryza sativa Indica Group]
          Length = 1349

 Score =  301 bits (770), Expect = 8e-79,   Method: Compositional matrix adjust.
 Identities = 166/551 (30%), Positives = 292/551 (52%), Gaps = 5/551 (0%)

Query: 47  GIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTT--FLSNHLISMYFKCGSD 104
            +R    T  F+ + C+ S   +      LH    +   P+   F++N LI MY + G  
Sbjct: 101 AVRPDGFTFHFLFK-CSSSSRPRALLCTMLHAACLRTMLPSAAPFVANSLIHMYTELGLA 159

Query: 105 VDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSG 164
            D R+ FD+IPVK+  S+  ++SG A +GM+  AR L      RDV+SW ++I  Y+++ 
Sbjct: 160 GDVRRAFDEIPVKDAVSWTMVISGLAKMGMLSDARLLLAQAPVRDVISWTSLIAAYSRAD 219

Query: 165 AVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISS 224
             +E +  +K +    I+ ++ +  G+L+ C +L++L+L   +H  V   G   +  +  
Sbjct: 220 RAKEAVDCFKNMLSEGIAPDDVTVIGVLSACSQLKDLELGCSLHSLVKEKGMSMSENLVV 279

Query: 225 SIVDAYAKCGELSDARRLFDETD-ARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPV 283
           +++D YAKCG+   AR +FD     R   +W  ++ GY K G ++ A  LF++M  ++ +
Sbjct: 280 ALIDMYAKCGDFGHAREVFDAVGRGRRPQSWNAIIDGYCKHGHVDVARSLFDQMEVRDII 339

Query: 284 SWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFL 343
           ++ ++I GY  +G  ++AL LF  M    +R +  T  S L ACAS+ +L  G+ +H  +
Sbjct: 340 TFNSMITGYIHSGQLREALLLFMNMRRHDLRVDNFTVVSLLSACASLGALPQGRALHACI 399

Query: 344 IRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQA 403
                 ++  + ++L+DMY KCG +N+   VF     K +   W  MI+ L  +G  +  
Sbjct: 400 ELRLVETDIYIGTALLDMYMKCGRVNEATIVFQRM-GKRDVHAWTAMIAGLAFNGMGKAG 458

Query: 404 IRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIE 463
           +  F+ M     +P+ ++   +L AC+HS L+ EG  YF+ M     I P  EH+ C+I+
Sbjct: 459 LEYFYQMRCDGFQPNPVSYIAVLTACSHSCLLNEGRLYFDEMRILYNIHPQIEHYGCMID 518

Query: 464 LLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSAT 523
           LL ++G  D+ M+ ++ MP + +S +W ++   CR+H  ID+ +   + L+   P   A 
Sbjct: 519 LLGRSGLLDEAMDLVKTMPMQPNSVIWASILSACRVHKRIDLAQCAAEHLLKIEPDEDAV 578

Query: 524 HGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVL 583
           +  L +I     K     K+R L+ ERQ KK    S + +  +VH F VSD  HP    +
Sbjct: 579 YVQLYNICIDSRKWEDASKIRMLMEERQVKKTAGYSSVTVAGQVHKFVVSDKSHPRILEI 638

Query: 584 YSVLEQLAGQM 594
            ++LE+++ ++
Sbjct: 639 IAMLEEISHRL 649



 Score =  171 bits (432), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 120/457 (26%), Positives = 220/457 (48%), Gaps = 39/457 (8%)

Query: 114  IPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFY 173
            IP  N+F  N+++  Y+ +G         +++   DV+SWN+++  YA  G ++E + + 
Sbjct: 927  IP-SNIFLSNSLVDLYSAIGDSVDTVKALNDILSEDVISWNSILSMYADRGHMKEAVYYL 985

Query: 174  KVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGF-LSNVVISSSIVDAYAK 232
            K +       +  SF  +L +  K  + +L  Q+HG V   GF  S+V + ++++D Y K
Sbjct: 986  KQMLWHGKMPSIRSFVSLLALSGKTGDWQLGVQIHGIVHKLGFSCSSVHVQTTLIDMYGK 1045

Query: 233  CGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGY 292
            C         FD + A                        +FNE+P        +LI   
Sbjct: 1046 CC-------CFDHSLA------------------------IFNEIPSIALECCNSLITSS 1074

Query: 293  TRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACA--SIVSLKHGKQVHGFLIRTNFRS 350
             R  +   ALE+   M++  + P+  TFS+ + A +  +  SL   + +H  L++  F  
Sbjct: 1075 LRCNMFDAALEILHCMIVEGVTPDDVTFSATMKAISLSASPSLTSCQMLHSCLVKLGFEM 1134

Query: 351  NTIVMSSLIDMYSKCGCLNDGRQVFD-LTDNKENSMLWNTMISALTQHGYDEQAIRLFHD 409
            +  V SSLI  Y+  G L+    +F+ L D   N + +  +ISA  ++G   +A+ LF  
Sbjct: 1135 DMAVCSSLITAYACAGQLSSSHLIFEGLLD--PNVICFTAIISACARYGDGARAMELFDQ 1192

Query: 410  MVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAG 469
            MV S +KPD +T    +  C  +G+ +EG    E M     + P++ H AC++ LL++ G
Sbjct: 1193 MVSSGLKPDNVTFLCAIAGCDQAGMFEEGRLVIELMRASRELDPDERHFACMVNLLSRDG 1252

Query: 470  CSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSS 529
               + M  +E+ P  H +  W++L   C+ HG   +G++  + LID   +  AT   +S+
Sbjct: 1253 FVKEAMEMMEQSPLRHYTKAWSSLLQSCKAHGENVLGKRAANMLIDVGRKDPATTLQVSN 1312

Query: 530  IYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENK 566
             ++ +G      +++++ N ++ KK    S IE+ ++
Sbjct: 1313 FFNDIGDRETALRIKEMTNVKEVKK-SGHSLIEVSHR 1348



 Score =  149 bits (377), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 107/401 (26%), Positives = 186/401 (46%), Gaps = 37/401 (9%)

Query: 35  EAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHL 94
           EA+     +   GI     T+  +L  C++ K L+LG  +H  +K  +  + +  L   L
Sbjct: 223 EAVDCFKNMLSEGIAPDDVTVIGVLSACSQLKDLELGCSLHSLVK-EKGMSMSENLVVAL 281

Query: 95  ISMYFKCGSDVDARKVFDKIPV-KNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSW 153
           I MY KCG    AR+VFD +   +   S+N ++ GY   G +  AR+LFD M  RD++++
Sbjct: 282 IDMYAKCGDFGHAREVFDAVGRGRRPQSWNAIIDGYCKHGHVDVARSLFDQMEVRDIITF 341

Query: 154 NTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLV 213
           N+MI GY  SG + E L  +  +RR  +  + F+   +L+ C  L  L   R +H  + +
Sbjct: 342 NSMITGYIHSGQLREALLLFMNMRRHDLRVDNFTVVSLLSACASLGALPQGRALHACIEL 401

Query: 214 TGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKL 273
               +++ I ++++D Y KCG +++A  +F     RDV  WT M++G A           
Sbjct: 402 RLVETDIYIGTALLDMYMKCGRVNEATIVFQRMGKRDVHAWTAMIAGLA----------- 450

Query: 274 FNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSL 333
                                NG+G+  LE F +M     +PN  ++ + L AC+    L
Sbjct: 451 --------------------FNGMGKAGLEYFYQMRCDGFQPNPVSYIAVLTACSHSCLL 490

Query: 334 KHGKQVHGFL-IRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMIS 392
             G+     + I  N          +ID+  + G L++   +      + NS++W +++S
Sbjct: 491 NEGRLYFDEMRILYNIHPQIEHYGCMIDLLGRSGLLDEAMDLVKTMPMQPNSVIWASILS 550

Query: 393 ALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVIL-NACTHS 432
           A   H   + A      +++  ++PD+  + V L N C  S
Sbjct: 551 ACRVHKRIDLAQCAAEHLLK--IEPDEDAVYVQLYNICIDS 589



 Score =  102 bits (255), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 103/440 (23%), Positives = 181/440 (41%), Gaps = 83/440 (18%)

Query: 27   LISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTP 86
             I  G    A +    +   GIR    T + IL  C+  ++L+L  RV   L L     P
Sbjct: 772  FIRDGLADRARAVYRWMVASGIRETPHTFSTILGVCSTYEALQLHGRV---LALGLCCNP 828

Query: 87   TTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMA 146
              F+ + L++ Y    S   +  +F ++P++N    N +L G  NL + +     F +M 
Sbjct: 829  --FVGSALVNHYMHVESPHASLSLFRELPLQNTAMCNVVLRGLGNLKLTEELICCFLDM- 885

Query: 147  ERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQ 206
             R  +  N +   YA  G  + G                             E L+  RQ
Sbjct: 886  RRQYLELNGLSYCYAMKGCYQNG-----------------------------EWLEQGRQ 916

Query: 207  VHGQVLVTGFL-SNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLG 265
            +HG VL  G++ SN+ +S+S+VD Y+  G+  D  +  ++  + DV++W +++S YA  G
Sbjct: 917  LHGVVLKAGWIPSNIFLSNSLVDLYSAIGDSVDTVKALNDILSEDVISWNSILSMYADRG 976

Query: 266  DMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLC 325
             M+ A     +M                          L+   M     P+  +F S L 
Sbjct: 977  HMKEAVYYLKQM--------------------------LWHGKM-----PSIRSFVSLLA 1005

Query: 326  ACASIVSLKHGKQVHGFLIRTNFRSNTI-VMSSLIDMYSKCGCLNDGRQVFDLTDNKENS 384
                    + G Q+HG + +  F  +++ V ++LIDMY KC C +    +F+   +    
Sbjct: 1006 LSGKTGDWQLGVQIHGIVHKLGFSCSSVHVQTTLIDMYGKCCCFDHSLAIFNEIPSIALE 1065

Query: 385  MLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFES 444
               + + S+L  + +D  A+ + H M+   V PD +T +  + A               S
Sbjct: 1066 CCNSLITSSLRCNMFD-AALEILHCMIVEGVTPDDVTFSATMKAI--------------S 1110

Query: 445  MTHDLGIIPNQEHHACLIEL 464
            ++    +   Q  H+CL++L
Sbjct: 1111 LSASPSLTSCQMLHSCLVKL 1130



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 78/343 (22%), Positives = 143/343 (41%), Gaps = 42/343 (12%)

Query: 144  NMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKL 203
             MA RDV S N MI G+ + G  +     Y+ +    I     +F+ IL +C   E L  
Sbjct: 756  TMAVRDVASLNRMITGFIRDGLADRARAVYRWMVASGIRETPHTFSTILGVCSTYEAL-- 813

Query: 204  TRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAK 263
              Q+HG+VL  G   N  + S++V+ Y                          + S +A 
Sbjct: 814  --QLHGRVLALGLCCNPFVGSALVNHYMH------------------------VESPHAS 847

Query: 264  LGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSC 323
            L        LF E+P +N      ++ G     L ++ +  F  M    +  N  ++   
Sbjct: 848  L-------SLFRELPLQNTAMCNVVLRGLGNLKLTEELICCFLDMRRQYLELNGLSYCYA 900

Query: 324  LCACASIVS-LKHGKQVHGFLIRTNF-RSNTIVMSSLIDMYSKCG-CLNDGRQVFDLTDN 380
            +  C      L+ G+Q+HG +++  +  SN  + +SL+D+YS  G  ++  + + D+   
Sbjct: 901  MKGCYQNGEWLEQGRQLHGVVLKAGWIPSNIFLSNSLVDLYSAIGDSVDTVKALNDIL-- 958

Query: 381  KENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLT 440
             E+ + WN+++S     G+ ++A+     M+     P   +   +L     +G  Q G+ 
Sbjct: 959  SEDVISWNSILSMYADRGHMKEAVYYLKQMLWHGKMPSIRSFVSLLALSGKTGDWQLGVQ 1018

Query: 441  YFESMTHDLGIIPNQEH-HACLIELLAQAGCSDQLMNQLEKMP 482
                + H LG   +  H    LI++  +  C D  +    ++P
Sbjct: 1019 -IHGIVHKLGFSCSSVHVQTTLIDMYGKCCCFDHSLAIFNEIP 1060



 Score = 66.2 bits (160), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 79/410 (19%), Positives = 153/410 (37%), Gaps = 105/410 (25%)

Query: 89   FLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNM--- 145
            FLSN L+ +Y   G  VD  K  + I  +++ S+N++LS YA+ G MK A      M   
Sbjct: 932  FLSNSLVDLYSAIGDSVDTVKALNDILSEDVISWNSILSMYADRGHMKEAVYYLKQMLWH 991

Query: 146  ----AERDVVS----------W-----------------------NTMIIGYAKSGAVEE 168
                + R  VS          W                        T+I  Y K    + 
Sbjct: 992  GKMPSIRSFVSLLALSGKTGDWQLGVQIHGIVHKLGFSCSSVHVQTTLIDMYGKCCCFDH 1051

Query: 169  GLKFYKVLRRF-----------SISCNEFSFAGILTICVKLE------------------ 199
             L  +  +              S+ CN F  A  +  C+ +E                  
Sbjct: 1052 SLAIFNEIPSIALECCNSLITSSLRCNMFDAALEILHCMIVEGVTPDDVTFSATMKAISL 1111

Query: 200  ----ELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWT 255
                 L   + +H  ++  GF  ++ + SS++ AYA  G+LS +  +F+     +V+ +T
Sbjct: 1112 SASPSLTSCQMLHSCLVKLGFEMDMAVCSSLITAYACAGQLSSSHLIFEGLLDPNVICFT 1171

Query: 256  TMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRP 315
             ++S  A+ GD                               G +A+ELF +M+   ++P
Sbjct: 1172 AIISACARYGD-------------------------------GARAMELFDQMVSSGLKP 1200

Query: 316  NQHTFSSCLCACASIVSLKHGKQVHGFLIRT-NFRSNTIVMSSLIDMYSKCGCLNDGRQV 374
            +  TF   +  C      + G+ V   +  +     +    + ++++ S+ G + +  ++
Sbjct: 1201 DNVTFLCAIAGCDQAGMFEEGRLVIELMRASRELDPDERHFACMVNLLSRDGFVKEAMEM 1260

Query: 375  FDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAV 424
             + +  +  +  W++++ +   HG +    R  + ++    K    TL V
Sbjct: 1261 MEQSPLRHYTKAWSSLLQSCKAHGENVLGKRAANMLIDVGRKDPATTLQV 1310



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 51/218 (23%), Positives = 95/218 (43%), Gaps = 7/218 (3%)

Query: 277 MPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHG 336
           M  ++  S   +I G+ R+GL  +A  ++  M+   IR   HTFS+ L  C++  +L   
Sbjct: 757 MAVRDVASLNRMITGFIRDGLADRARAVYRWMVASGIRETPHTFSTILGVCSTYEAL--- 813

Query: 337 KQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQ 396
            Q+HG ++      N  V S+L++ Y      +    +F      +N+ + N ++  L  
Sbjct: 814 -QLHGRVLALGLCCNPFVGSALVNHYMHVESPHASLSLFRELP-LQNTAMCNVVLRGLGN 871

Query: 397 HGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQE 456
               E+ I  F DM R  ++ + ++    +  C  +G   E       +    G IP+  
Sbjct: 872 LKLTEELICCFLDMRRQYLELNGLSYCYAMKGCYQNGEWLEQGRQLHGVVLKAGWIPSNI 931

Query: 457 HHA-CLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNAL 493
             +  L++L +  G S   +  L  +  E D   WN++
Sbjct: 932 FLSNSLVDLYSAIGDSVDTVKALNDILSE-DVISWNSI 968



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/154 (25%), Positives = 75/154 (48%), Gaps = 5/154 (3%)

Query: 28  ISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPT 87
           I  GQL EA+     + +  +R+   T+  +L  CA   +L  G+ +H  ++L   +T  
Sbjct: 349 IHSGQLREALLLFMNMRRHDLRVDNFTVVSLLSACASLGALPQGRALHACIELRLVET-D 407

Query: 88  TFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMA- 146
            ++   L+ MY KCG   +A  VF ++  +++ ++  M++G A  GM K     F  M  
Sbjct: 408 IYIGTALLDMYMKCGRVNEATIVFQRMGKRDVHAWTAMIAGLAFNGMGKAGLEYFYQMRC 467

Query: 147 ---ERDVVSWNTMIIGYAKSGAVEEGLKFYKVLR 177
              + + VS+  ++   + S  + EG  ++  +R
Sbjct: 468 DGFQPNPVSYIAVLTACSHSCLLNEGRLYFDEMR 501


>gi|359488555|ref|XP_003633777.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g01510-like, partial [Vitis vinifera]
          Length = 825

 Score =  301 bits (770), Expect = 8e-79,   Method: Compositional matrix adjust.
 Identities = 161/482 (33%), Positives = 267/482 (55%), Gaps = 33/482 (6%)

Query: 116 VKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKV 175
           V N+F  N +L  Y+    +  AR LFD M E+D VS+N +I GYA  G  +     ++ 
Sbjct: 282 VWNVFVSNALLDFYSKHDSVIDARKLFDEMPEQDGVSYNVIISGYAWDGKHKYAFDLFRE 341

Query: 176 LRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGE 235
           L+  +    +F FA +L+I     + ++ RQ+H Q +VT   S +++ +S+VD YA    
Sbjct: 342 LQFTAFDRKQFPFATMLSIASNTLDWEMGRQIHAQTIVTTADSEILVGNSLVDMYA---- 397

Query: 236 LSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRN 295
                                      K G  E A  +F  +  ++ V WT +I+ Y + 
Sbjct: 398 ---------------------------KCGKFEEAEMIFTNLTHRSAVPWTAMISAYVQK 430

Query: 296 GLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVM 355
           G  ++ L+LF +M    +  +Q TF+S L A ASI SL  GKQ+H F+I++ F SN    
Sbjct: 431 GFYEEGLQLFNKMRQASVIADQATFASLLRASASIASLSLGKQLHSFIIKSGFMSNVFSG 490

Query: 356 SSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSV 415
           S+L+D+Y+KCG + D  Q F    ++ N + WN MISA  Q+G  E  ++ F +MV S +
Sbjct: 491 SALLDVYAKCGSIKDAVQTFQEMPDR-NIVSWNAMISAYAQNGEAEATLKSFKEMVLSGL 549

Query: 416 KPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLM 475
           +PD ++   +L+AC+HSGLV+EGL +F SMT    + P +EH+A ++++L ++G  ++  
Sbjct: 550 QPDSVSFLGVLSACSHSGLVEEGLWHFNSMTQIYKLDPRREHYASVVDMLCRSGRFNEAE 609

Query: 476 NQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLID-QNPQSSATHGLLSSIYSAL 534
             + +MP + D  +W+++   CRIH N ++ R+  DQL + +  + +A +  +S+IY+A 
Sbjct: 610 KLMAEMPIDPDEIMWSSVLNACRIHKNQELARRAADQLFNMEELRDAAPYVNMSNIYAAA 669

Query: 535 GKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQM 594
           G+   V KV + + +R  KK  A SW+EI+++ H FS +D  HP  + +   ++ L   M
Sbjct: 670 GQWENVSKVHKAMRDRGVKKLPAYSWVEIKHETHMFSANDRCHPQIEEIRKKIDMLTKTM 729

Query: 595 GE 596
            E
Sbjct: 730 EE 731



 Score =  169 bits (428), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 99/347 (28%), Positives = 174/347 (50%), Gaps = 32/347 (9%)

Query: 86  PTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNM 145
           P T  SN  +  + K G    AR++F+K+P KN  S N M+SGY   G +  AR LFD M
Sbjct: 50  PDTSRSNFRVGNFLKNGELSQARQLFEKMPHKNTVSTNMMISGYVKSGNLGEARKLFDGM 109

Query: 146 AERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTR 205
            ER  V+W  +I GY++    +E  + +  ++R     +  +F  +L+ C   E      
Sbjct: 110 VERTAVTWTILIGGYSQLNQFKEAFELFVQMQRCGTEPDYVTFVTLLSGCNGHEMGNQIT 169

Query: 206 QVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLG 265
           QV  Q++  G+ S +++ +++VD+Y K   L  A +LF E    D +++  M++GY+K  
Sbjct: 170 QVQTQIIKLGYDSRLIVGNTLVDSYCKSNRLDLACQLFKEMPEIDSVSYNAMITGYSK-- 227

Query: 266 DMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLC 325
                                        +GL +KA+ LF  M    ++P + TF++ LC
Sbjct: 228 -----------------------------DGLDEKAVNLFVEMQNSGLKPTEFTFAAVLC 258

Query: 326 ACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSM 385
           A   +  +  G+Q+H F+I+TNF  N  V ++L+D YSK   + D R++FD    +++ +
Sbjct: 259 ANIGLDDIVLGQQIHSFVIKTNFVWNVFVSNALLDFYSKHDSVIDARKLFDEMP-EQDGV 317

Query: 386 LWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHS 432
            +N +IS     G  + A  LF ++  ++    +   A +L+  +++
Sbjct: 318 SYNVIISGYAWDGKHKYAFDLFRELQFTAFDRKQFPFATMLSIASNT 364



 Score =  129 bits (324), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 108/453 (23%), Positives = 194/453 (42%), Gaps = 112/453 (24%)

Query: 29  SKGQLSEAISSLDLLAQRGIRLPAE-TLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPT 87
           SK  L E   +L +  Q     P E T A +L        + LG+++H  +  T      
Sbjct: 226 SKDGLDEKAVNLFVEMQNSGLKPTEFTFAAVLCANIGLDDIVLGQQIHSFVIKTNF-VWN 284

Query: 88  TFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNM-- 145
            F+SN L+  Y K  S +DARK+FD++P ++  SYN ++SGYA  G  K+A +LF  +  
Sbjct: 285 VFVSNALLDFYSKHDSVIDARKLFDEMPEQDGVSYNVIISGYAWDGKHKYAFDLFRELQF 344

Query: 146 -------------------------------------AERDVVSWNTMIIGYAKSGAV-- 166
                                                A+ +++  N+++  YAK G    
Sbjct: 345 TAFDRKQFPFATMLSIASNTLDWEMGRQIHAQTIVTTADSEILVGNSLVDMYAKCGKFEE 404

Query: 167 -----------------------------EEGLKFYKVLRRFSISCNEFSFAGILTICVK 197
                                        EEGL+ +  +R+ S+  ++ +FA +L     
Sbjct: 405 AEMIFTNLTHRSAVPWTAMISAYVQKGFYEEGLQLFNKMRQASVIADQATFASLLRASAS 464

Query: 198 LEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTM 257
           +  L L +Q+H  ++ +GF+SNV   S+++D YAKCG + DA + F E   R++++W  M
Sbjct: 465 IASLSLGKQLHSFIIKSGFMSNVFSGSALLDVYAKCGSIKDAVQTFQEMPDRNIVSWNAM 524

Query: 258 VSGYAKLGDMESASKLFNEMP----EKNPVSWTTLIAGYTRNGLGQKALELFTRM-MILR 312
           +S YA+ G+ E+  K F EM     + + VS+  +++  + +GL ++ L  F  M  I +
Sbjct: 525 ISAYAQNGEAEATLKSFKEMVLSGLQPDSVSFLGVLSACSHSGLVEEGLWHFNSMTQIYK 584

Query: 313 IRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGR 372
           + P +  +                                   +S++DM  + G  N+  
Sbjct: 585 LDPRREHY-----------------------------------ASVVDMLCRSGRFNEAE 609

Query: 373 QVFDLTDNKENSMLWNTMISALTQHGYDEQAIR 405
           ++        + ++W+++++A   H   E A R
Sbjct: 610 KLMAEMPIDPDEIMWSSVLNACRIHKNQELARR 642



 Score =  129 bits (324), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 96/356 (26%), Positives = 172/356 (48%), Gaps = 37/356 (10%)

Query: 201 LKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSG 260
           L +   +  +++ TGF  +   S+  V  + K GELS AR+LF++   ++ ++   M+SG
Sbjct: 33  LNVVNNIDARIVKTGFDPDTSRSNFRVGNFLKNGELSQARQLFEKMPHKNTVSTNMMISG 92

Query: 261 YAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTF 320
           Y K G++  A KLF+ M E+  V+WT LI GY++    ++A ELF +M      P+  TF
Sbjct: 93  YVKSGNLGEARKLFDGMVERTAVTWTILIGGYSQLNQFKEAFELFVQMQRCGTEPDYVTF 152

Query: 321 SSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDN 380
            + L  C          QV   +I+  + S  IV ++L+D Y K   L+   Q+F     
Sbjct: 153 VTLLSGCNGHEMGNQITQVQTQIIKLGYDSRLIVGNTLVDSYCKSNRLDLACQLFKEMP- 211

Query: 381 KENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLT 440
           + +S+ +N MI+  ++ G DE+A+ LF +M  S +KP + T A +L  C + GL      
Sbjct: 212 EIDSVSYNAMITGYSKDGLDEKAVNLFVEMQNSGLKPTEFTFAAVL--CANIGLDD---- 265

Query: 441 YFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIH 500
                     I+  Q+ H+ +I                 K  +  + ++ NAL      H
Sbjct: 266 ----------IVLGQQIHSFVI-----------------KTNFVWNVFVSNALLDFYSKH 298

Query: 501 GNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQ 556
            ++   RK+ D++ +Q+     ++ ++ S Y+  GK +    + + +    F ++Q
Sbjct: 299 DSVIDARKLFDEMPEQD---GVSYNVIISGYAWDGKHKYAFDLFRELQFTAFDRKQ 351


>gi|356559204|ref|XP_003547890.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like [Glycine max]
          Length = 619

 Score =  301 bits (770), Expect = 9e-79,   Method: Compositional matrix adjust.
 Identities = 185/584 (31%), Positives = 292/584 (50%), Gaps = 53/584 (9%)

Query: 59  LQQCAESKSLKL----GKRVHLHLKLTQRKT----PTTFLSNHLISMYFKCGSDVDARKV 110
           L +  E K + L    G  V LH    Q  T       +++   I+   + G    AR+V
Sbjct: 17  LHRVVEDKFISLLRTCGTCVRLHQIQAQIVTHGLEGNDYVTPSFITACARLGGIRRARRV 76

Query: 111 FDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNM----AERDVVSWNTMIIGYAKSGAV 166
           FDK    N  ++N M  GYA          LF  M    A  +  ++  ++   A + A 
Sbjct: 77  FDKTAQPNGATWNAMFRGYAQANCHLDVVVLFARMHRAGASPNCFTFPMVVKSCATANAA 136

Query: 167 EEGLKFYKVLRRFSISCNEFSFAGIL---------------TICVKLEE---LKLTRQVH 208
           +EG + + V+ +     N F    ++                +  ++ +      T  V 
Sbjct: 137 KEGEEVHCVVAKRGFKSNTFVGCALIHMYSLRGGVFVADAYKVFAEMRDKNVFAWTAIVA 196

Query: 209 GQVLVTGFLS-----------NVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTM 257
             V     +S           +VV+ + +V  Y + G++  AR LFD    RDV++W T+
Sbjct: 197 AHVACRDMVSARRLFDLAPQRDVVLWNVVVSGYIELGDMVAARELFDRMPDRDVMSWNTV 256

Query: 258 VSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILR----- 312
           +SGYA  G++ES  KLF EMP +N  SW  LI GY RNGL ++ALE F RM++L      
Sbjct: 257 LSGYATNGEVESFVKLFEEMPVRNVYSWNGLIGGYVRNGLFKEALECFKRMLVLVEGEGK 316

Query: 313 ------IRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCG 366
                 + PN +T  + L AC+ +  L+ GK VH +     ++ N  V ++LIDMY+KCG
Sbjct: 317 EGSDGVVVPNDYTVVAVLTACSRLGDLEMGKWVHVYAESIGYKGNLFVGNALIDMYAKCG 376

Query: 367 CLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVIL 426
            +     VFD  D K+  + WNT+I+ L  HG+   A+ LF  M R+  +PD +T   IL
Sbjct: 377 VIEKALDVFDGLDVKD-IITWNTIINGLAMHGHVADALSLFERMKRAGERPDGVTFVGIL 435

Query: 427 NACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHD 486
           +ACTH GLV+ GL +F+SM  D  I+P  EH+ C+++LL +AG  D+ ++ + KMP E D
Sbjct: 436 SACTHMGLVRNGLLHFQSMVDDYSIVPQIEHYGCMVDLLGRAGLIDKAVDIVRKMPMEPD 495

Query: 487 SYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQL 546
           + +W AL G CR++ N++M    + +LI+  P +     ++S+IY  LG+ + V +++  
Sbjct: 496 AVIWAALLGACRMYKNVEMAELALQRLIELEPNNPGNFVMVSNIYKDLGRSQDVARLKVA 555

Query: 547 INERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQL 590
           + +  F+K    S I   + +  F   D  HP  D +Y  L+ L
Sbjct: 556 MRDTGFRKVPGCSVIGCNDSMVEFYSLDERHPETDSIYRALQGL 599



 Score =  129 bits (325), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 88/335 (26%), Positives = 149/335 (44%), Gaps = 80/335 (23%)

Query: 54  TLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMY--------------- 98
           T   +++ CA + + K G+ VH  +     K+  TF+   LI MY               
Sbjct: 122 TFPMVVKSCATANAAKEGEEVHCVVAKRGFKS-NTFVGCALIHMYSLRGGVFVADAYKVF 180

Query: 99  ------------------FKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARN 140
                               C   V AR++FD  P +++  +N ++SGY  LG M  AR 
Sbjct: 181 AEMRDKNVFAWTAIVAAHVACRDMVSARRLFDLAPQRDVVLWNVVVSGYIELGDMVAARE 240

Query: 141 LFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKV--------------------LRRFS 180
           LFD M +RDV+SWNT++ GYA +G VE  +K ++                     L + +
Sbjct: 241 LFDRMPDRDVMSWNTVLSGYATNGEVESFVKLFEEMPVRNVYSWNGLIGGYVRNGLFKEA 300

Query: 181 ISC----------------------NEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLS 218
           + C                      N+++   +LT C +L +L++ + VH      G+  
Sbjct: 301 LECFKRMLVLVEGEGKEGSDGVVVPNDYTVVAVLTACSRLGDLEMGKWVHVYAESIGYKG 360

Query: 219 NVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMP 278
           N+ + ++++D YAKCG +  A  +FD  D +D++TW T+++G A  G +  A  LF  M 
Sbjct: 361 NLFVGNALIDMYAKCGVIEKALDVFDGLDVKDIITWNTIINGLAMHGHVADALSLFERMK 420

Query: 279 ----EKNPVSWTTLIAGYTRNGLGQKALELFTRMM 309
                 + V++  +++  T  GL +  L  F  M+
Sbjct: 421 RAGERPDGVTFVGILSACTHMGLVRNGLLHFQSMV 455



 Score = 62.0 bits (149), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 45/141 (31%), Positives = 75/141 (53%), Gaps = 7/141 (4%)

Query: 47  GIRLPAE-TLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDV 105
           G+ +P + T+  +L  C+    L++GK VH++ +    K    F+ N LI MY KCG   
Sbjct: 321 GVVVPNDYTVVAVLTACSRLGDLEMGKWVHVYAESIGYKG-NLFVGNALIDMYAKCGVIE 379

Query: 106 DARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNM---AER-DVVSWNTMIIGYA 161
            A  VFD + VK++ ++N +++G A  G +  A +LF+ M    ER D V++  ++    
Sbjct: 380 KALDVFDGLDVKDIITWNTIINGLAMHGHVADALSLFERMKRAGERPDGVTFVGILSACT 439

Query: 162 KSGAVEEG-LKFYKVLRRFSI 181
             G V  G L F  ++  +SI
Sbjct: 440 HMGLVRNGLLHFQSMVDDYSI 460


>gi|225446849|ref|XP_002279693.1| PREDICTED: pentatricopeptide repeat-containing protein At2g42920,
           chloroplastic [Vitis vinifera]
 gi|302143555|emb|CBI22116.3| unnamed protein product [Vitis vinifera]
          Length = 533

 Score =  301 bits (770), Expect = 9e-79,   Method: Compositional matrix adjust.
 Identities = 154/460 (33%), Positives = 264/460 (57%), Gaps = 2/460 (0%)

Query: 133 GMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLK-FYKVLRRFSISCNEFSFAGI 191
           G + +A  +F  +   ++ SWNT+I G+++S      +  F  +L   S+  +  ++  +
Sbjct: 72  GDINYAYLVFTQIHSPNLFSWNTIIRGFSQSSTPHHAISLFIDMLIVSSVQPHRLTYPSV 131

Query: 192 LTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDV 251
                +L       Q+HG+V+  G   +  I ++I+  YA CG LS+  + F E    D+
Sbjct: 132 FKAYAQLGLAHYGAQLHGRVIKLGLQFDPFIRNTIIYMYANCGFLSEMWKAFYERMDFDI 191

Query: 252 LTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMIL 311
           + W +M+ G AK G+++ + KLF+EMP +N VSW ++I+GY RNG  ++AL+LF +M   
Sbjct: 192 VAWNSMIMGLAKCGEVDESRKLFDEMPLRNTVSWNSMISGYVRNGRLREALDLFGQMQEE 251

Query: 312 RIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDG 371
           RI+P++ T  S L A A + +LK G+ +H ++ + NF  N IV +S+IDMY KCG + + 
Sbjct: 252 RIKPSEFTMVSLLNASARLGALKQGEWIHDYIRKNNFELNVIVTASIIDMYCKCGSIGEA 311

Query: 372 RQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTH 431
            QVF++   K  S  WNTMI  L  +G + +AI+LF  +  S+++PD +T   +L AC +
Sbjct: 312 FQVFEMAPLKGLSS-WNTMILGLAMNGCENEAIQLFSRLECSNLRPDDVTFVGVLTACNY 370

Query: 432 SGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWN 491
           SGLV +   YF  M+    I P+ +H++C+++ L +AG  ++    +  MP   D+ +W+
Sbjct: 371 SGLVDKAKEYFSLMSKTYKIEPSIKHYSCMVDTLGRAGLLEEAEELIRNMPVNPDAIIWS 430

Query: 492 ALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQ 551
           +L   CR HGN+++ ++    ++D +   S  + LLS+IY+A  +     + R  + E+Q
Sbjct: 431 SLLSACRKHGNVELAKRAAKHIVDLDGNDSCGYVLLSNIYAASDQFEEAMEQRLSMKEKQ 490

Query: 552 FKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLA 591
            +KE   S IE+  ++H F     LHP    +YS+L +L 
Sbjct: 491 IEKEPGCSLIEVNGEIHEFVAGGRLHPQAQEVYSLLNELG 530



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 93/368 (25%), Positives = 171/368 (46%), Gaps = 35/368 (9%)

Query: 40  LDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLH-LKLTQRKTPTTFLSNHLISMY 98
           +D+L    ++    T   + +  A+      G ++H   +KL  +  P  F+ N +I MY
Sbjct: 113 IDMLIVSSVQPHRLTYPSVFKAYAQLGLAHYGAQLHGRVIKLGLQFDP--FIRNTIIYMY 170

Query: 99  FKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMII 158
             CG   +  K F +    ++ ++N+M+ G A  G +  +R LFD M  R+ VSWN+MI 
Sbjct: 171 ANCGFLSEMWKAFYERMDFDIVAWNSMIMGLAKCGEVDESRKLFDEMPLRNTVSWNSMIS 230

Query: 159 GYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLS 218
           GY ++G + E L  +  ++   I  +EF+   +L    +L  LK    +H  +    F  
Sbjct: 231 GYVRNGRLREALDLFGQMQEERIKPSEFTMVSLLNASARLGALKQGEWIHDYIRKNNFEL 290

Query: 219 NVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMP 278
           NV++++SI+D Y KCG + +A ++F+    + + +W TM+ G A                
Sbjct: 291 NVIVTASIIDMYCKCGSIGEAFQVFEMAPLKGLSSWNTMILGLA---------------- 334

Query: 279 EKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQ 338
                           NG   +A++LF+R+    +RP+  TF   L AC     +   K+
Sbjct: 335 ---------------MNGCENEAIQLFSRLECSNLRPDDVTFVGVLTACNYSGLVDKAKE 379

Query: 339 VHGFLIRTNFRSNTIV-MSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQH 397
               + +T     +I   S ++D   + G L +  ++        ++++W++++SA  +H
Sbjct: 380 YFSLMSKTYKIEPSIKHYSCMVDTLGRAGLLEEAEELIRNMPVNPDAIIWSSLLSACRKH 439

Query: 398 GYDEQAIR 405
           G  E A R
Sbjct: 440 GNVELAKR 447



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 58/263 (22%), Positives = 113/263 (42%), Gaps = 37/263 (14%)

Query: 12  RKNLPNNCLIQSFLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLG 71
           R  +  N +I  +   +  G+L EA+     + +  I+    T+  +L   A   +LK G
Sbjct: 220 RNTVSWNSMISGY---VRNGRLREALDLFGQMQEERIKPSEFTMVSLLNASARLGALKQG 276

Query: 72  KRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYAN 131
           + +H +++    +     ++  +I MY KCGS  +A +VF+  P+K L S+N        
Sbjct: 277 EWIHDYIRKNNFEL-NVIVTASIIDMYCKCGSIGEAFQVFEMAPLKGLSSWN-------- 327

Query: 132 LGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGI 191
                                  TMI+G A +G   E ++ +  L   ++  ++ +F G+
Sbjct: 328 -----------------------TMILGLAMNGCENEAIQLFSRLECSNLRPDDVTFVGV 364

Query: 192 LTICVKLEELKLTRQVHGQVLVTGFLS-NVVISSSIVDAYAKCGELSDARRLFDETDAR- 249
           LT C     +   ++    +  T  +  ++   S +VD   + G L +A  L        
Sbjct: 365 LTACNYSGLVDKAKEYFSLMSKTYKIEPSIKHYSCMVDTLGRAGLLEEAEELIRNMPVNP 424

Query: 250 DVLTWTTMVSGYAKLGDMESASK 272
           D + W++++S   K G++E A +
Sbjct: 425 DAIIWSSLLSACRKHGNVELAKR 447


>gi|225440839|ref|XP_002276333.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Vitis vinifera]
          Length = 705

 Score =  301 bits (770), Expect = 9e-79,   Method: Compositional matrix adjust.
 Identities = 158/508 (31%), Positives = 274/508 (53%), Gaps = 39/508 (7%)

Query: 94  LISMYFKC---GSDVDARKVFDKIPVK----NLFSYNNMLSGYANLGMMKHARNLFDNMA 146
           ++++ F C   G+   AR + D I  K    ++     M+  YA  G ++ AR +FD M 
Sbjct: 134 MVTVVFACAKLGAMHKARIIDDYIQRKKFQLDVILGTAMIDMYAKCGCVESAREIFDRME 193

Query: 147 ERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQ 206
           E++V+SW+ MI  Y   G   + L  ++++    +  ++ + A +L  C  L+ L++ R 
Sbjct: 194 EKNVISWSAMIAAYGYHGQGRKALDLFRMMLSSGMLPDKITLASLLYACSDLKNLQMGRL 253

Query: 207 VHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGD 266
           +H  V   G   +  + +++VD Y KC E+ D                            
Sbjct: 254 IHHIVYKFGLDLDHFVCAALVDMYGKCREIED---------------------------- 285

Query: 267 MESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCA 326
              A  LF++MPE++ V+WT +I GY   G   ++L LF +M    + P++    + + A
Sbjct: 286 ---ARFLFDKMPERDLVTWTVMIGGYAECGNANESLVLFDKMREEGVVPDKVAMVTVVFA 342

Query: 327 CASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSML 386
           CA + ++   + +  ++ R  F+ + I+ +++IDM++KCGC+   R++FD  + K N + 
Sbjct: 343 CAKLGAMHKARTIDDYIQRKKFQLDVILGTAMIDMHAKCGCVESAREIFDRMEEK-NVIS 401

Query: 387 WNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMT 446
           W+ MI+A   HG   +A+ LF  M+RS + P+KITL  +L AC+H+GLV+EGL +F  M 
Sbjct: 402 WSAMIAAYGYHGQGRKALDLFPMMLRSGILPNKITLVSLLYACSHAGLVEEGLRFFSLMW 461

Query: 447 HDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMG 506
            D  +  + +H+ C+++LL +AG  D+ +  +E M  E D  LW A  G CR H ++ + 
Sbjct: 462 EDYSVRADVKHYTCVVDLLGRAGRLDEALKLIESMTVEKDEGLWGAFLGACRTHKDVVLA 521

Query: 507 RKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENK 566
            K    L++  PQ+   + LLS+IY+  G+   V K R L+++R+ KK    +WIE++NK
Sbjct: 522 EKAATSLLELQPQNPGHYILLSNIYANAGRWEDVAKTRDLMSQRRLKKIPGWTWIEVDNK 581

Query: 567 VHAFSVSDSLHPMRDVLYSVLEQLAGQM 594
            H FSV D+ HP    +Y +L+ L  ++
Sbjct: 582 SHQFSVGDTTHPRSKEIYEMLKSLGNKL 609



 Score =  181 bits (459), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 122/472 (25%), Positives = 217/472 (45%), Gaps = 75/472 (15%)

Query: 43  LAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCG 102
           L + G R    TL F+++ C + K+L++G+ +H H+          F+   L+ MY KC 
Sbjct: 21  LIRCGARPDNYTLPFVIRACRDLKNLQMGRLIH-HIVYKFGLDLDHFVCAALVDMYVKC- 78

Query: 103 SDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAK 162
                R++ D                         AR LFD M ERD+V+W  MI GYA+
Sbjct: 79  -----REIED-------------------------ARFLFDKMQERDLVTWTVMIGGYAE 108

Query: 163 SGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVI 222
            G   E L  ++ +R   +  ++ +   ++  C KL  +   R +   +    F  +V++
Sbjct: 109 CGKANESLVLFEKMREEGVVPDKVAMVTVVFACAKLGAMHKARIIDDYIQRKKFQLDVIL 168

Query: 223 SSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNP 282
            ++++D YAKCG +  AR +FD  + ++V++W+ M++ Y                     
Sbjct: 169 GTAMIDMYAKCGCVESAREIFDRMEEKNVISWSAMIAAY--------------------- 207

Query: 283 VSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGF 342
                   GY  +G G+KAL+LF  M+   + P++ T +S L AC+ + +L+ G+ +H  
Sbjct: 208 --------GY--HGQGRKALDLFRMMLSSGMLPDKITLASLLYACSDLKNLQMGRLIHHI 257

Query: 343 LIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQ 402
           + +     +  V ++L+DMY KC  + D R +FD    + + + W  MI    + G   +
Sbjct: 258 VYKFGLDLDHFVCAALVDMYGKCREIEDARFLFDKMPER-DLVTWTVMIGGYAECGNANE 316

Query: 403 AIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLT---YFESMTHDLGIIPNQEHHA 459
           ++ LF  M    V PDK+ +  ++ AC   G + +  T   Y +     L +I       
Sbjct: 317 SLVLFDKMREEGVVPDKVAMVTVVFACAKLGAMHKARTIDDYIQRKKFQLDVILG----T 372

Query: 460 CLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVD 511
            +I++ A+ GC +      ++M  E +   W+A+      HG    GRK +D
Sbjct: 373 AMIDMHAKCGCVESAREIFDRME-EKNVISWSAMIAAYGYHGQ---GRKALD 420



 Score =  156 bits (394), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 108/405 (26%), Positives = 191/405 (47%), Gaps = 44/405 (10%)

Query: 156 MIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTG 215
           M+ G+AK G        ++ L R     + ++   ++  C  L+ L++ R +H  V   G
Sbjct: 1   MVGGFAKVGDYINCFGTFRELIRCGARPDNYTLPFVIRACRDLKNLQMGRLIHHIVYKFG 60

Query: 216 FLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFN 275
              +  + +++VD Y KC E+ DAR LFD+   RD++TWT M+ GYA+ G    +  LF 
Sbjct: 61  LDLDHFVCAALVDMYVKCREIEDARFLFDKMQERDLVTWTVMIGGYAECGKANESLVLFE 120

Query: 276 EMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKH 335
           +M E+  V                               P++    + + ACA + ++  
Sbjct: 121 KMREEGVV-------------------------------PDKVAMVTVVFACAKLGAMHK 149

Query: 336 GKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALT 395
            + +  ++ R  F+ + I+ +++IDMY+KCGC+   R++FD  + K N + W+ MI+A  
Sbjct: 150 ARIIDDYIQRKKFQLDVILGTAMIDMYAKCGCVESAREIFDRMEEK-NVISWSAMIAAYG 208

Query: 396 QHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQ 455
            HG   +A+ LF  M+ S + PDKITLA +L AC+    +Q G      + +  G+  + 
Sbjct: 209 YHGQGRKALDLFRMMLSSGMLPDKITLASLLYACSDLKNLQMG-RLIHHIVYKFGL--DL 265

Query: 456 EHHAC--LIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQL 513
           +H  C  L+++  +    +      +KMP E D   W  + G     GN +    + D++
Sbjct: 266 DHFVCAALVDMYGKCREIEDARFLFDKMP-ERDLVTWTVMIGGYAECGNANESLVLFDKM 324

Query: 514 IDQN--PQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQ 556
            ++   P   A    + ++  A  K   + K R + +  Q KK Q
Sbjct: 325 REEGVVPDKVA----MVTVVFACAKLGAMHKARTIDDYIQRKKFQ 365



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 86/368 (23%), Positives = 163/368 (44%), Gaps = 64/368 (17%)

Query: 31  GQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFL 90
           GQ  +A+    ++   G+     TLA +L  C++ K+L++G+ +H H+          F+
Sbjct: 211 GQGRKALDLFRMMLSSGMLPDKITLASLLYACSDLKNLQMGRLIH-HIVYKFGLDLDHFV 269

Query: 91  SNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDV 150
              L+ MY KC    DAR +FDK+P ++L ++  M+ GYA  G    +  LFD M E  V
Sbjct: 270 CAALVDMYGKCREIEDARFLFDKMPERDLVTWTVMIGGYAECGNANESLVLFDKMREEGV 329

Query: 151 VSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQ 210
           V                                ++ +   ++  C KL  +   R +   
Sbjct: 330 VP-------------------------------DKVAMVTVVFACAKLGAMHKARTIDDY 358

Query: 211 VLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESA 270
           +    F  +V++ ++++D +AKCG +  AR +FD  + ++V++W+ M++ Y         
Sbjct: 359 IQRKKFQLDVILGTAMIDMHAKCGCVESAREIFDRMEEKNVISWSAMIAAY--------- 409

Query: 271 SKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASI 330
                               GY  +G G+KAL+LF  M+   I PN+ T  S L AC+  
Sbjct: 410 --------------------GY--HGQGRKALDLFPMMLRSGILPNKITLVSLLYACSHA 447

Query: 331 VSLKHGKQVHGFLIRT-NFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNT 389
             ++ G +    +    + R++    + ++D+  + G L++  ++ +    +++  LW  
Sbjct: 448 GLVEEGLRFFSLMWEDYSVRADVKHYTCVVDLLGRAGRLDEALKLIESMTVEKDEGLWGA 507

Query: 390 MISALTQH 397
            + A   H
Sbjct: 508 FLGACRTH 515


>gi|449486805|ref|XP_004157408.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
            protein At4g33170-like [Cucumis sativus]
          Length = 1573

 Score =  301 bits (770), Expect = 9e-79,   Method: Compositional matrix adjust.
 Identities = 165/567 (29%), Positives = 289/567 (50%), Gaps = 67/567 (11%)

Query: 35   EAISSLDLLAQRGIRLPAETLAFILQQCA---ESKSLKLGKRVHLHLKLTQRKTPTTFLS 91
            EAI +   L + G++    TLA +L+ C+   E +   LG +VH++              
Sbjct: 978  EAICTFRDLLRDGLKPDQFTLASVLRACSTGDEGEYFTLGSQVHVYA------------- 1024

Query: 92   NHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVV 151
                    KCG             + + F    ++  Y+  G M  A  L     + D+ 
Sbjct: 1025 -------IKCG------------IINDSFVSTALIDLYSKGGKMDEAEFLLHGKYDFDLA 1065

Query: 152  SWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQV 211
            SWN ++ GY KS    + L+ + ++    I  +E + A  +     L  LK  +Q+    
Sbjct: 1066 SWNAIMFGYIKSNKSRKALEHFSLMHEMGIPIDEITLATAIKASGCLINLKQGKQIQAYA 1125

Query: 212  LVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESAS 271
            +  GF +++ +SS ++D Y KCG                               DM +A 
Sbjct: 1126 IKLGFNNDLWVSSGVLDMYIKCG-------------------------------DMPNAL 1154

Query: 272  KLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIV 331
            +LF E+   + V+WTT+I+GY  NG    AL ++  M +  ++P+++TF++ + A + + 
Sbjct: 1155 ELFGEISRPDEVAWTTMISGYIENGDEDHALSVYHLMRVSGVQPDEYTFATLIKASSCLT 1214

Query: 332  SLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMI 391
            +L+ GKQ+H  +++ ++  +  V +SL+DMY KCG + D  +VF   D ++  + WN M+
Sbjct: 1215 ALEQGKQIHANVVKLDYSLDHFVGTSLVDMYCKCGSVQDAYRVFRKMDVRK-VVFWNAML 1273

Query: 392  SALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGI 451
              L QHG+ ++A+ LF  M  + ++PDK+T   +L+AC+HSGL  E   YF++M    GI
Sbjct: 1274 LGLAQHGHVDEALNLFRTMQSNGIQPDKVTFIGVLSACSHSGLFSEAYKYFDAMFKTYGI 1333

Query: 452  IPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVD 511
             P  EH++CL++ L +AG   +  N +  MP++  + ++ AL G CR  G+ +  ++V D
Sbjct: 1334 TPEIEHYSCLVDALGRAGRIQEAENVIASMPFKASASMYRALLGACRTKGDAETAKRVAD 1393

Query: 512  QLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFS 571
            +L+  +P  S+ + LLS+IY+A  +   V   R ++  +  KK+   SWI+++NKVH F 
Sbjct: 1394 KLLALDPSDSSAYVLLSNIYAASRQWDDVTDARNMMKLKNVKKDPGFSWIDVKNKVHLFV 1453

Query: 572  VSDSLHPMRDVLYSVLEQLAGQMGEDA 598
            V D  HP   ++Y  +E L  ++ E+ 
Sbjct: 1454 VDDRSHPQASLIYEKIEDLMKRIREEG 1480



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 132/477 (27%), Positives = 215/477 (45%), Gaps = 84/477 (17%)

Query: 68   LKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLS 127
            LKLGKR H  + +T    P  +L+N+LI+MY KCGS   AR+VFDK   ++L ++N++L+
Sbjct: 627  LKLGKRAHARI-VTSGDLPDRYLTNNLITMYSKCGSLCSARQVFDKSSDRDLVTWNSILA 685

Query: 128  GYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFS 187
             YA       A + ++N                     V EG + + +LR F  S    +
Sbjct: 686  AYAQF-----ADSSYEN---------------------VLEGFRLFGLLREFGFSITRLT 719

Query: 188  FAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETD 247
             A +L +C+    ++++  VHG  +  GF  ++ +S ++V+ Y K G +  AR LFD+  
Sbjct: 720  LAPLLKLCLLSGFVQVSETVHGYAVKIGFELDLFVSGALVNIYCKYGLVGQARLLFDKMP 779

Query: 248  ARDVLTWTTMVSGYAK-----------------------------LGDMES--------- 269
             RD + W  M+  Y +                             +G + S         
Sbjct: 780  ERDAVLWNVMLKAYVENSFQDEALRFFSAFHRSGFXPDFSNLHCVIGGVNSDVSNNRKRH 839

Query: 270  -------ASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSS 322
                   A K+F      N  +W   +  +   G    A++ F  ++   I  +  T   
Sbjct: 840  AEQVKAYAMKMFPFDQGSNIFAWNKKLTEFLHAGQIVAAIDCFKTLLRSTIGHDSVTLVI 899

Query: 323  CLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKE 382
             L A      L  G+Q+H  +I+++F     V +SL++MYSK G +    + F +   + 
Sbjct: 900  ILSAAVGADDLDLGEQIHALVIKSSFAPVVPVSNSLMNMYSKAGVVYAAEKTF-INSPEL 958

Query: 383  NSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYF 442
            + + WNTMIS+  Q+  + +AI  F D++R  +KPD+ TLA +L AC+      EG  YF
Sbjct: 959  DLISWNTMISSYAQNNLEMEAICTFRDLLRDGLKPDQFTLASVLRACSTG---DEG-EYF 1014

Query: 443  E--SMTH----DLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNAL 493
               S  H      GII +      LI+L ++ G  D+    L    Y+ D   WNA+
Sbjct: 1015 TLGSQVHVYAIKCGIINDSFVSTALIDLYSKGGKMDEAEFLLHG-KYDFDLASWNAI 1070



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 93/394 (23%), Positives = 165/394 (41%), Gaps = 92/394 (23%)

Query: 89   FLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNM--- 145
            F+S  L+++Y K G    AR +FDK+P ++   +N ML  Y        A   F      
Sbjct: 753  FVSGALVNIYCKYGLVGQARLLFDKMPERDAVLWNVMLKAYVENSFQDEALRFFSAFHRS 812

Query: 146  ---------------------------AER---------------DVVSWNTMIIGYAKS 163
                                       AE+               ++ +WN  +  +  +
Sbjct: 813  GFXPDFSNLHCVIGGVNSDVSNNRKRHAEQVKAYAMKMFPFDQGSNIFAWNKKLTEFLHA 872

Query: 164  GAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVIS 223
            G +   +  +K L R +I  +  +   IL+  V  ++L L  Q+H  V+ + F   V +S
Sbjct: 873  GQIVAAIDCFKTLLRSTIGHDSVTLVIILSAAVGADDLDLGEQIHALVIKSSFAPVVPVS 932

Query: 224  SSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPV 283
            +S+++ Y+K G +                        YA       A K F   PE + +
Sbjct: 933  NSLMNMYSKAGVV------------------------YA-------AEKTFINSPELDLI 961

Query: 284  SWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKH---GKQVH 340
            SW T+I+ Y +N L  +A+  F  ++   ++P+Q T +S L AC++    ++   G QVH
Sbjct: 962  SWNTMISSYAQNNLEMEAICTFRDLLRDGLKPDQFTLASVLRACSTGDEGEYFTLGSQVH 1021

Query: 341  GFLIRTNFRSNTIVMSSLIDMYSKCGCLND------GRQVFDLTDNKENSMLWNTMISAL 394
             + I+    +++ V ++LID+YSK G +++      G+  FDL         WN ++   
Sbjct: 1022 VYAIKCGIINDSFVSTALIDLYSKGGKMDEAEFLLHGKYDFDLAS-------WNAIMFGY 1074

Query: 395  TQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNA 428
             +     +A+  F  M    +  D+ITLA  + A
Sbjct: 1075 IKSNKSRKALEHFSLMHEMGIPIDEITLATAIKA 1108



 Score = 99.0 bits (245), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 56/234 (23%), Positives = 118/234 (50%), Gaps = 27/234 (11%)

Query: 195 CVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTW 254
            + + +LKL ++ H +++ +G L +  ++++++  Y+KCG L  AR++FD++  RD++TW
Sbjct: 621 AIAMADLKLGKRAHARIVTSGDLPDRYLTNNLITMYSKCGSLCSARQVFDKSSDRDLVTW 680

Query: 255 TTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIR 314
            ++++ YA+  D                 S+  ++ G+   GL ++     TR+      
Sbjct: 681 NSILAAYAQFADS----------------SYENVLEGFRLFGLLREFGFSITRL------ 718

Query: 315 PNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQV 374
               T +  L  C     ++  + VHG+ ++  F  +  V  +L+++Y K G +   R +
Sbjct: 719 ----TLAPLLKLCLLSGFVQVSETVHGYAVKIGFELDLFVSGALVNIYCKYGLVGQARLL 774

Query: 375 FDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNA 428
           FD    ++ ++LWN M+ A  ++ + ++A+R F    RS   PD   L  ++  
Sbjct: 775 FDKMPERD-AVLWNVMLKAYVENSFQDEALRFFSAFHRSGFXPDFSNLHCVIGG 827



 Score = 95.1 bits (235), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 75/303 (24%), Positives = 138/303 (45%), Gaps = 40/303 (13%)

Query: 28   ISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLH-LKLTQRKTP 86
            I   +  +A+    L+ + GI +   TLA  ++      +LK GK++  + +KL      
Sbjct: 1075 IKSNKSRKALEHFSLMHEMGIPIDEITLATAIKASGCLINLKQGKQIQAYAIKLGFNND- 1133

Query: 87   TTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMA 146
              ++S+ ++ MY KCG   +A ++F +I   +  ++  M+SGY   G   HA        
Sbjct: 1134 -LWVSSGVLDMYIKCGDMPNALELFGEISRPDEVAWTTMISGYIENGDEDHA-------- 1184

Query: 147  ERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQ 206
                                   L  Y ++R   +  +E++FA ++     L  L+  +Q
Sbjct: 1185 -----------------------LSVYHLMRVSGVQPDEYTFATLIKASSCLTALEQGKQ 1221

Query: 207  VHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGD 266
            +H  V+   +  +  + +S+VD Y KCG + DA R+F + D R V+ W  M+ G A+ G 
Sbjct: 1222 IHANVVKLDYSLDHFVGTSLVDMYCKCGSVQDAYRVFRKMDVRKVVFWNAMLLGLAQHGH 1281

Query: 267  MESASKLFNEMP----EKNPVSWTTLIAGYTRNGLGQKALELFTRMM-ILRIRPNQHTFS 321
            ++ A  LF  M     + + V++  +++  + +GL  +A + F  M     I P    + 
Sbjct: 1282 VDEALNLFRTMQSNGIQPDKVTFIGVLSACSHSGLFSEAYKYFDAMFKTYGITPEIEHY- 1340

Query: 322  SCL 324
            SCL
Sbjct: 1341 SCL 1343



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 58/257 (22%), Positives = 122/257 (47%), Gaps = 13/257 (5%)

Query: 28   ISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPT 87
            I  G    A+S   L+   G++    T A +++  +   +L+ GK++H ++ +    +  
Sbjct: 1176 IENGDEDHALSVYHLMRVSGVQPDEYTFATLIKASSCLTALEQGKQIHANV-VKLDYSLD 1234

Query: 88   TFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMA- 146
             F+   L+ MY KCGS  DA +VF K+ V+ +  +N ML G A  G +  A NLF  M  
Sbjct: 1235 HFVGTSLVDMYCKCGSVQDAYRVFRKMDVRKVVFWNAMLLGLAQHGHVDEALNLFRTMQS 1294

Query: 147  ---ERDVVSWNTMIIGYAKSGAVEEGLKFYKVL-RRFSISCNEFSFAGILTICVKLEELK 202
               + D V++  ++   + SG   E  K++  + + + I+     ++ ++    +   ++
Sbjct: 1295 NGIQPDKVTFIGVLSACSHSGLFSEAYKYFDAMFKTYGITPEIEHYSCLVDALGRAGRIQ 1354

Query: 203  LTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYA 262
                V   +    F ++  +  +++ A    G+   A+R+ D+  A D     +  S Y 
Sbjct: 1355 EAENV---IASMPFKASASMYRALLGACRTKGDAETAKRVADKLLALD----PSDSSAYV 1407

Query: 263  KLGDMESASKLFNEMPE 279
             L ++ +AS+ ++++ +
Sbjct: 1408 LLSNIYAASRQWDDVTD 1424



 Score = 59.3 bits (142), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 50/173 (28%), Positives = 85/173 (49%), Gaps = 14/173 (8%)

Query: 329 SIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWN 388
           ++  LK GK+ H  ++ +    +  + ++LI MYSKCG L   RQVFD + +++  + WN
Sbjct: 623 AMADLKLGKRAHARIVTSGDLPDRYLTNNLITMYSKCGSLCSARQVFDKSSDRD-LVTWN 681

Query: 389 TMISALTQHG---YDE--QAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLT--- 440
           ++++A  Q     Y+   +  RLF  +        ++TLA +L  C  SG VQ   T   
Sbjct: 682 SILAAYAQFADSSYENVLEGFRLFGLLREFGFSITRLTLAPLLKLCLLSGFVQVSETVHG 741

Query: 441 YFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNAL 493
           Y   +  +L +  +      L+ +  + G   Q     +KMP E D+ LWN +
Sbjct: 742 YAVKIGFELDLFVS----GALVNIYCKYGLVGQARLLFDKMP-ERDAVLWNVM 789


>gi|357159954|ref|XP_003578611.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like [Brachypodium distachyon]
          Length = 600

 Score =  301 bits (770), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 158/509 (31%), Positives = 281/509 (55%), Gaps = 13/509 (2%)

Query: 87  TTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMA 146
           TTFL N L+  Y       +A  VF  +P ++ F+Y+ ++   ++ G+    R +  ++ 
Sbjct: 88  TTFLPNTLLRAYALNALPREAVAVFSAMPHRDSFTYSFLIKALSSAGVAP-LRAVHSHVV 146

Query: 147 E----RDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELK 202
           +     D    N +I  Y+K+G   +  K ++ + R  +     S+   +   V+  E++
Sbjct: 147 KLGSIEDTYVGNALIDAYSKNGGFSDASKVFEEMPRRDV----VSWNSAMAAMVRQGEVE 202

Query: 203 LTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYA 262
             R++  ++L      + V  ++++D Y K G++ +A +LF     R+V++W+T+VSGY 
Sbjct: 203 GARRMFDEMLE----KDTVSWNTLLDGYTKAGDVEEAFKLFQCMPERNVVSWSTVVSGYC 258

Query: 263 KLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSS 322
           K GDME A  +F++MP KN V+WT +++   +NGL ++A +LFT+M    +  +     S
Sbjct: 259 KKGDMEMARVIFDKMPTKNLVTWTIMVSACAQNGLVEEAGKLFTQMKEASVELDVAAVVS 318

Query: 323 CLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKE 382
            L ACA   SL  GK++H ++       +T V ++LIDM+ KCGC+N    VFD    ++
Sbjct: 319 ILAACAESGSLALGKRIHRYVRTRQLGRSTHVCNALIDMFCKCGCINRADYVFDTEIVEK 378

Query: 383 NSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYF 442
           +S+ WNT+I     HG+ ++A+  F  M      PD +T+  +L+ACTH G V+EG  YF
Sbjct: 379 DSVSWNTIIGGFAMHGHGDKALDFFAQMKLQGFCPDAVTMINVLSACTHMGFVEEGRRYF 438

Query: 443 ESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGN 502
            +M  D G++P  EH+ C+I+LL + G   + ++ ++ MP++ +  +W +L   CR+H N
Sbjct: 439 ANMERDYGVVPQIEHYGCMIDLLGRGGLIKEAVDLIKSMPWDPNEVIWGSLLSACRLHKN 498

Query: 503 IDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIE 562
           ++     V++L    P ++  + +LSSIY+  GK   + K R  +     +K    SWIE
Sbjct: 499 VEYAEIAVNELSKLQPSNAGNYAVLSSIYAEAGKWSDMAKARMQMKGTGSQKSSGSSWIE 558

Query: 563 IENKVHAFSVSDSLHPMRDVLYSVLEQLA 591
           ++   H F+V D  HP  D +  ++++L+
Sbjct: 559 LDEAFHEFTVGDRKHPDSDQISEMVDRLS 587



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 91/378 (24%), Positives = 147/378 (38%), Gaps = 85/378 (22%)

Query: 198 LEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDAR----------------- 240
           L  L   +++H Q+L  G   + V +S ++ +YA    L  +R                 
Sbjct: 34  LPRLHHLQELHAQLLKHGLHLDPVAASKLLSSYALHRRLPASRGVFASFPNPHATTFLPN 93

Query: 241 ----------------RLFDETDARDVLTWTTMV---------------SGYAKLGDME- 268
                            +F     RD  T++ ++               S   KLG +E 
Sbjct: 94  TLLRAYALNALPREAVAVFSAMPHRDSFTYSFLIKALSSAGVAPLRAVHSHVVKLGSIED 153

Query: 269 ------------------SASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMI 310
                              ASK+F EMP ++ VSW + +A   R G  + A  +F  M+ 
Sbjct: 154 TYVGNALIDAYSKNGGFSDASKVFEEMPRRDVVSWNSAMAAMVRQGEVEGARRMFDEML- 212

Query: 311 LRIRPNQHTFSSCLCACASIVSLKHGKQVHGF-LIRTNFRSNTIVMSSLIDMYSKCGCLN 369
                +  ++++ L         K G     F L +     N +  S+++  Y K G + 
Sbjct: 213 ---EKDTVSWNTLLDGYT-----KAGDVEEAFKLFQCMPERNVVSWSTVVSGYCKKGDME 264

Query: 370 DGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNAC 429
             R +FD    K N + W  M+SA  Q+G  E+A +LF  M  +SV+ D   +  IL AC
Sbjct: 265 MARVIFDKMPTK-NLVTWTIMVSACAQNGLVEEAGKLFTQMKEASVELDVAAVVSILAAC 323

Query: 430 THSGLVQEGLTYFESM-THDLGIIPNQEHHAC--LIELLAQAGCSDQLMNQLEKMPYEHD 486
             SG +  G      + T  LG    +  H C  LI++  + GC ++     +    E D
Sbjct: 324 AESGSLALGKRIHRYVRTRQLG----RSTHVCNALIDMFCKCGCINRADYVFDTEIVEKD 379

Query: 487 SYLWNALHGVCRIHGNID 504
           S  WN + G   +HG+ D
Sbjct: 380 SVSWNTIIGGFAMHGHGD 397



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 48/153 (31%), Positives = 77/153 (50%), Gaps = 6/153 (3%)

Query: 31  GQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFL 90
           G + EA      + +  + L    +  IL  CAES SL LGKR+H +++ T++   +T +
Sbjct: 292 GLVEEAGKLFTQMKEASVELDVAAVVSILAACAESGSLALGKRIHRYVR-TRQLGRSTHV 350

Query: 91  SNHLISMYFKCGSDVDARKVFD-KIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAER- 148
            N LI M+ KCG    A  VFD +I  K+  S+N ++ G+A  G    A + F  M  + 
Sbjct: 351 CNALIDMFCKCGCINRADYVFDTEIVEKDSVSWNTIIGGFAMHGHGDKALDFFAQMKLQG 410

Query: 149 ---DVVSWNTMIIGYAKSGAVEEGLKFYKVLRR 178
              D V+   ++      G VEEG +++  + R
Sbjct: 411 FCPDAVTMINVLSACTHMGFVEEGRRYFANMER 443


>gi|449447363|ref|XP_004141438.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33170-like
            [Cucumis sativus]
          Length = 1573

 Score =  300 bits (769), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 165/567 (29%), Positives = 289/567 (50%), Gaps = 67/567 (11%)

Query: 35   EAISSLDLLAQRGIRLPAETLAFILQQCA---ESKSLKLGKRVHLHLKLTQRKTPTTFLS 91
            EAI +   L + G++    TLA +L+ C+   E +   LG +VH++              
Sbjct: 978  EAICTFRDLLRDGLKPDQFTLASVLRACSTGDEGEYFTLGSQVHVYA------------- 1024

Query: 92   NHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVV 151
                    KCG             + + F    ++  Y+  G M  A  L     + D+ 
Sbjct: 1025 -------IKCG------------IINDSFVSTALIDLYSKGGKMDEAEFLLHGKYDFDLA 1065

Query: 152  SWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQV 211
            SWN ++ GY KS    + L+ + ++    I  +E + A  +     L  LK  +Q+    
Sbjct: 1066 SWNAIMFGYIKSNKSRKALEHFSLMHEMGIPIDEITLATAIKASGCLINLKQGKQIQAYA 1125

Query: 212  LVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESAS 271
            +  GF +++ +SS ++D Y KCG                               DM +A 
Sbjct: 1126 IKLGFNNDLWVSSGVLDMYIKCG-------------------------------DMPNAL 1154

Query: 272  KLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIV 331
            +LF E+   + V+WTT+I+GY  NG    AL ++  M +  ++P+++TF++ + A + + 
Sbjct: 1155 ELFGEISRPDEVAWTTMISGYIENGDEDHALSVYHLMRVSGVQPDEYTFATLIKASSCLT 1214

Query: 332  SLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMI 391
            +L+ GKQ+H  +++ ++  +  V +SL+DMY KCG + D  +VF   D ++  + WN M+
Sbjct: 1215 ALEQGKQIHANVVKLDYSLDHFVGTSLVDMYCKCGSVQDAYRVFRKMDVRK-VVFWNAML 1273

Query: 392  SALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGI 451
              L QHG+ ++A+ LF  M  + ++PDK+T   +L+AC+HSGL  E   YF++M    GI
Sbjct: 1274 LGLAQHGHVDEALNLFRTMQSNGIQPDKVTFIGVLSACSHSGLFSEAYKYFDAMFKTYGI 1333

Query: 452  IPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVD 511
             P  EH++CL++ L +AG   +  N +  MP++  + ++ AL G CR  G+ +  ++V D
Sbjct: 1334 TPEIEHYSCLVDALGRAGRIQEAENVIASMPFKASASMYRALLGACRTKGDAETAKRVAD 1393

Query: 512  QLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFS 571
            +L+  +P  S+ + LLS+IY+A  +   V   R ++  +  KK+   SWI+++NKVH F 
Sbjct: 1394 KLLALDPSDSSAYVLLSNIYAASRQWDDVTDARNMMKLKNVKKDPGFSWIDVKNKVHLFV 1453

Query: 572  VSDSLHPMRDVLYSVLEQLAGQMGEDA 598
            V D  HP   ++Y  +E L  ++ E+ 
Sbjct: 1454 VDDRSHPQASLIYEKIEDLMKRIREEG 1480



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 132/477 (27%), Positives = 215/477 (45%), Gaps = 84/477 (17%)

Query: 68   LKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLS 127
            LKLGKR H  + +T    P  +L+N+LI+MY KCGS   AR+VFDK   ++L ++N++L+
Sbjct: 627  LKLGKRAHARI-VTSGDLPDRYLTNNLITMYSKCGSLCSARQVFDKSSDRDLVTWNSILA 685

Query: 128  GYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFS 187
             YA       A + ++N                     V EG + + +LR F  S    +
Sbjct: 686  AYAQF-----ADSSYEN---------------------VLEGFRLFGLLREFGFSITRLT 719

Query: 188  FAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETD 247
             A +L +C+    ++++  VHG  +  GF  ++ +S ++V+ Y K G +  AR LFD+  
Sbjct: 720  LAPLLKLCLLSGFVQVSETVHGYAVKIGFELDLFVSGALVNIYCKYGLVGQARLLFDKMP 779

Query: 248  ARDVLTWTTMVSGYAK-----------------------------LGDMES--------- 269
             RD + W  M+  Y +                             +G + S         
Sbjct: 780  ERDAVLWNVMLKAYVENSFQDEALRFFSAFHRSGFFPDFSNLHCVIGGVNSDVSNNRKRH 839

Query: 270  -------ASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSS 322
                   A K+F      N  +W   +  +   G    A++ F  ++   I  +  T   
Sbjct: 840  AEQVKAYAMKMFPFDQGSNIFAWNKKLTEFLHAGQIVAAIDCFKTLLRSTIGHDSVTLVI 899

Query: 323  CLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKE 382
             L A      L  G+Q+H  +I+++F     V +SL++MYSK G +    + F +   + 
Sbjct: 900  ILSAAVGADDLDLGEQIHALVIKSSFAPVVPVSNSLMNMYSKAGVVYAAEKTF-INSPEL 958

Query: 383  NSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYF 442
            + + WNTMIS+  Q+  + +AI  F D++R  +KPD+ TLA +L AC+      EG  YF
Sbjct: 959  DLISWNTMISSYAQNNLEMEAICTFRDLLRDGLKPDQFTLASVLRACSTG---DEG-EYF 1014

Query: 443  E--SMTH----DLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNAL 493
               S  H      GII +      LI+L ++ G  D+    L    Y+ D   WNA+
Sbjct: 1015 TLGSQVHVYAIKCGIINDSFVSTALIDLYSKGGKMDEAEFLLHG-KYDFDLASWNAI 1070



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 93/394 (23%), Positives = 165/394 (41%), Gaps = 92/394 (23%)

Query: 89   FLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNM--- 145
            F+S  L+++Y K G    AR +FDK+P ++   +N ML  Y        A   F      
Sbjct: 753  FVSGALVNIYCKYGLVGQARLLFDKMPERDAVLWNVMLKAYVENSFQDEALRFFSAFHRS 812

Query: 146  ---------------------------AER---------------DVVSWNTMIIGYAKS 163
                                       AE+               ++ +WN  +  +  +
Sbjct: 813  GFFPDFSNLHCVIGGVNSDVSNNRKRHAEQVKAYAMKMFPFDQGSNIFAWNKKLTEFLHA 872

Query: 164  GAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVIS 223
            G +   +  +K L R +I  +  +   IL+  V  ++L L  Q+H  V+ + F   V +S
Sbjct: 873  GQIVAAIDCFKTLLRSTIGHDSVTLVIILSAAVGADDLDLGEQIHALVIKSSFAPVVPVS 932

Query: 224  SSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPV 283
            +S+++ Y+K G +                        YA       A K F   PE + +
Sbjct: 933  NSLMNMYSKAGVV------------------------YA-------AEKTFINSPELDLI 961

Query: 284  SWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKH---GKQVH 340
            SW T+I+ Y +N L  +A+  F  ++   ++P+Q T +S L AC++    ++   G QVH
Sbjct: 962  SWNTMISSYAQNNLEMEAICTFRDLLRDGLKPDQFTLASVLRACSTGDEGEYFTLGSQVH 1021

Query: 341  GFLIRTNFRSNTIVMSSLIDMYSKCGCLND------GRQVFDLTDNKENSMLWNTMISAL 394
             + I+    +++ V ++LID+YSK G +++      G+  FDL         WN ++   
Sbjct: 1022 VYAIKCGIINDSFVSTALIDLYSKGGKMDEAEFLLHGKYDFDLAS-------WNAIMFGY 1074

Query: 395  TQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNA 428
             +     +A+  F  M    +  D+ITLA  + A
Sbjct: 1075 IKSNKSRKALEHFSLMHEMGIPIDEITLATAIKA 1108



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 56/234 (23%), Positives = 118/234 (50%), Gaps = 27/234 (11%)

Query: 195 CVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTW 254
            + + +LKL ++ H +++ +G L +  ++++++  Y+KCG L  AR++FD++  RD++TW
Sbjct: 621 AIAMADLKLGKRAHARIVTSGDLPDRYLTNNLITMYSKCGSLCSARQVFDKSSDRDLVTW 680

Query: 255 TTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIR 314
            ++++ YA+  D                 S+  ++ G+   GL ++     TR+      
Sbjct: 681 NSILAAYAQFADS----------------SYENVLEGFRLFGLLREFGFSITRL------ 718

Query: 315 PNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQV 374
               T +  L  C     ++  + VHG+ ++  F  +  V  +L+++Y K G +   R +
Sbjct: 719 ----TLAPLLKLCLLSGFVQVSETVHGYAVKIGFELDLFVSGALVNIYCKYGLVGQARLL 774

Query: 375 FDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNA 428
           FD    ++ ++LWN M+ A  ++ + ++A+R F    RS   PD   L  ++  
Sbjct: 775 FDKMPERD-AVLWNVMLKAYVENSFQDEALRFFSAFHRSGFFPDFSNLHCVIGG 827



 Score = 95.1 bits (235), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 70/287 (24%), Positives = 132/287 (45%), Gaps = 38/287 (13%)

Query: 28   ISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLH-LKLTQRKTP 86
            I   +  +A+    L+ + GI +   TLA  ++      +LK GK++  + +KL      
Sbjct: 1075 IKSNKSRKALEHFSLMHEMGIPIDEITLATAIKASGCLINLKQGKQIQAYAIKLGFNND- 1133

Query: 87   TTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMA 146
              ++S+ ++ MY KCG   +A ++F +I   +  ++  M+SGY   G   HA        
Sbjct: 1134 -LWVSSGVLDMYIKCGDMPNALELFGEISRPDEVAWTTMISGYIENGDEDHA-------- 1184

Query: 147  ERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQ 206
                                   L  Y ++R   +  +E++FA ++     L  L+  +Q
Sbjct: 1185 -----------------------LSVYHLMRVSGVQPDEYTFATLIKASSCLTALEQGKQ 1221

Query: 207  VHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGD 266
            +H  V+   +  +  + +S+VD Y KCG + DA R+F + D R V+ W  M+ G A+ G 
Sbjct: 1222 IHANVVKLDYSLDHFVGTSLVDMYCKCGSVQDAYRVFRKMDVRKVVFWNAMLLGLAQHGH 1281

Query: 267  MESASKLFNEMP----EKNPVSWTTLIAGYTRNGLGQKALELFTRMM 309
            ++ A  LF  M     + + V++  +++  + +GL  +A + F  M 
Sbjct: 1282 VDEALNLFRTMQSNGIQPDKVTFIGVLSACSHSGLFSEAYKYFDAMF 1328



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 58/257 (22%), Positives = 122/257 (47%), Gaps = 13/257 (5%)

Query: 28   ISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPT 87
            I  G    A+S   L+   G++    T A +++  +   +L+ GK++H ++ +    +  
Sbjct: 1176 IENGDEDHALSVYHLMRVSGVQPDEYTFATLIKASSCLTALEQGKQIHANV-VKLDYSLD 1234

Query: 88   TFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMA- 146
             F+   L+ MY KCGS  DA +VF K+ V+ +  +N ML G A  G +  A NLF  M  
Sbjct: 1235 HFVGTSLVDMYCKCGSVQDAYRVFRKMDVRKVVFWNAMLLGLAQHGHVDEALNLFRTMQS 1294

Query: 147  ---ERDVVSWNTMIIGYAKSGAVEEGLKFYKVL-RRFSISCNEFSFAGILTICVKLEELK 202
               + D V++  ++   + SG   E  K++  + + + I+     ++ ++    +   ++
Sbjct: 1295 NGIQPDKVTFIGVLSACSHSGLFSEAYKYFDAMFKTYGITPEIEHYSCLVDALGRAGRIQ 1354

Query: 203  LTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYA 262
                V   +    F ++  +  +++ A    G+   A+R+ D+  A D     +  S Y 
Sbjct: 1355 EAENV---IASMPFKASASMYRALLGACRTKGDAETAKRVADKLLALD----PSDSSAYV 1407

Query: 263  KLGDMESASKLFNEMPE 279
             L ++ +AS+ ++++ +
Sbjct: 1408 LLSNIYAASRQWDDVTD 1424



 Score = 59.3 bits (142), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 50/173 (28%), Positives = 85/173 (49%), Gaps = 14/173 (8%)

Query: 329 SIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWN 388
           ++  LK GK+ H  ++ +    +  + ++LI MYSKCG L   RQVFD + +++  + WN
Sbjct: 623 AMADLKLGKRAHARIVTSGDLPDRYLTNNLITMYSKCGSLCSARQVFDKSSDRD-LVTWN 681

Query: 389 TMISALTQHG---YDE--QAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLT--- 440
           ++++A  Q     Y+   +  RLF  +        ++TLA +L  C  SG VQ   T   
Sbjct: 682 SILAAYAQFADSSYENVLEGFRLFGLLREFGFSITRLTLAPLLKLCLLSGFVQVSETVHG 741

Query: 441 YFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNAL 493
           Y   +  +L +  +      L+ +  + G   Q     +KMP E D+ LWN +
Sbjct: 742 YAVKIGFELDLFVS----GALVNIYCKYGLVGQARLLFDKMP-ERDAVLWNVM 789


>gi|356555170|ref|XP_003545909.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g20230-like [Glycine max]
          Length = 741

 Score =  300 bits (769), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 181/595 (30%), Positives = 294/595 (49%), Gaps = 42/595 (7%)

Query: 16  PNNC--LIQSFLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKR 73
           P  C  LI +F    ++G  +EAI     L  RGI+        + + C  S      K 
Sbjct: 97  PTTCSTLISAF---TTRGLPNEAIRLYASLRARGIKPHNSVFLTVAKACGASGDASRVKE 153

Query: 74  VHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLG 133
           VH    +        FL N LI  Y KC     AR+VFD + VK++ S+ +M S Y N G
Sbjct: 154 VHDD-AIRCGMMSDAFLGNALIHAYGKCKCVEGARRVFDDLVVKDVVSWTSMSSCYVNCG 212

Query: 134 MMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILT 193
           + +    +F  M       WN                          +  N  + + IL 
Sbjct: 213 LPRLGLAVFCEMG------WN-------------------------GVKPNSVTLSSILP 241

Query: 194 ICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLT 253
            C +L++LK  R +HG  +  G + NV + S++V  YA+C  +  AR +FD    RDV++
Sbjct: 242 ACSELKDLKSGRAIHGFAVRHGMIENVFVCSALVSLYARCLSVKQARLVFDLMPHRDVVS 301

Query: 254 WTTMVSGYAKLGDMESASKLFNEMP----EKNPVSWTTLIAGYTRNGLGQKALELFTRMM 309
           W  +++ Y    + +    LF++M     E +  +W  +I G   NG  +KA+E+  +M 
Sbjct: 302 WNGVLTAYFTNREYDKGLALFSQMSSKGVEADEATWNAVIGGCMENGQTEKAVEMLRKMQ 361

Query: 310 ILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLN 369
            L  +PNQ T SS L AC+ + SL+ GK+VH ++ R     +   M++L+ MY+KCG LN
Sbjct: 362 NLGFKPNQITISSFLPACSILESLRMGKEVHCYVFRHWLIGDLTTMTALVYMYAKCGDLN 421

Query: 370 DGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNAC 429
             R VFD+   K+  + WNTMI A   HG   + + LF  M++S +KP+ +T   +L+ C
Sbjct: 422 LSRNVFDMICRKD-VVAWNTMIIANAMHGNGREVLLLFESMLQSGIKPNSVTFTGVLSGC 480

Query: 430 THSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYL 489
           +HS LV+EGL  F SM  D  + P+  H+AC++++ ++AG   +    +++MP E  +  
Sbjct: 481 SHSRLVEEGLQIFNSMGRDHLVEPDANHYACMVDVFSRAGRLHEAYEFIQRMPMEPTASA 540

Query: 490 WNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINE 549
           W AL G CR++ N+++ +   ++L +  P +   +  L +I           + R L+ E
Sbjct: 541 WGALLGACRVYKNVELAKISANKLFEIEPNNPGNYVSLFNILVTAKLWSEASEARILMKE 600

Query: 550 RQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQMGEDAPSLDAD 604
           R   K    SW+++ ++VH F V D  +   D +Y+ L++L  +M       D D
Sbjct: 601 RGITKTPGCSWLQVGDRVHTFVVGDKNNMESDKIYNFLDELGEKMKSAGYKPDTD 655



 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 90/332 (27%), Positives = 155/332 (46%), Gaps = 35/332 (10%)

Query: 125 MLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCN 184
           +L    N+G  + A+ LFDN+ + D  + +T+I  +   G   E ++ Y  LR   I  +
Sbjct: 72  LLKAALNVGDFRRAQQLFDNIPQPDPTTCSTLISAFTTRGLPNEAIRLYASLRARGIKPH 131

Query: 185 EFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFD 244
              F  +   C    +    ++VH   +  G +S+  + ++++ AY KC  +  ARR+FD
Sbjct: 132 NSVFLTVAKACGASGDASRVKEVHDDAIRCGMMSDAFLGNALIHAYGKCKCVEGARRVFD 191

Query: 245 ETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALEL 304
           +   +DV++WT+M S Y                                  GL +  L +
Sbjct: 192 DLVVKDVVSWTSMSSCYVNC-------------------------------GLPRLGLAV 220

Query: 305 FTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSK 364
           F  M    ++PN  T SS L AC+ +  LK G+ +HGF +R     N  V S+L+ +Y++
Sbjct: 221 FCEMGWNGVKPNSVTLSSILPACSELKDLKSGRAIHGFAVRHGMIENVFVCSALVSLYAR 280

Query: 365 CGCLNDGRQVFDLTDNKENSMLWNTMISA-LTQHGYDEQAIRLFHDMVRSSVKPDKITLA 423
           C  +   R VFDL  +++  + WN +++A  T   YD + + LF  M    V+ D+ T  
Sbjct: 281 CLSVKQARLVFDLMPHRD-VVSWNGVLTAYFTNREYD-KGLALFSQMSSKGVEADEATWN 338

Query: 424 VILNACTHSGLVQEGLTYFESMTHDLGIIPNQ 455
            ++  C  +G  ++ +     M  +LG  PNQ
Sbjct: 339 AVIGGCMENGQTEKAVEMLRKM-QNLGFKPNQ 369


>gi|356566136|ref|XP_003551291.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g47840-like [Glycine max]
          Length = 733

 Score =  300 bits (769), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 166/571 (29%), Positives = 285/571 (49%), Gaps = 66/571 (11%)

Query: 27  LISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTP 86
           L+  G   E +     + +  +   + T A  L+  A+S  L  GK +H    + Q    
Sbjct: 200 LVHAGYNMEGLLYFSEMWRSKVGYDSHTFAIALKASADSSLLHHGKAIHTQ-TIKQGFDE 258

Query: 87  TTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMA 146
           ++F+ N L +MY KCG                                  +   LF+ M 
Sbjct: 259 SSFVINTLATMYNKCGKP-------------------------------DYVMRLFEKMR 287

Query: 147 ERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQ 206
             DVVSW T+I  Y + G  E  ++ +K +R+  +S N+++FA +++ C  L   K   Q
Sbjct: 288 MPDVVSWTTLISTYVQMGEEEHAVEAFKRMRKSYVSPNKYTFAAVISSCANLAAAKWGEQ 347

Query: 207 VHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGD 266
           +HG VL  G ++ + +++SI+  Y+KCG L  A  +F     +D+++W+T++S Y++ G 
Sbjct: 348 IHGHVLRLGLVNALSVANSIITLYSKCGLLKSASLVFHGITRKDIISWSTIISVYSQGGY 407

Query: 267 MESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCA 326
            + A    + M  + P                               +PN+   SS L  
Sbjct: 408 AKEAFDYLSWMRREGP-------------------------------KPNEFALSSVLSV 436

Query: 327 CASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSML 386
           C S+  L+ GKQVH  L+        +V S++I MYSKCG + +  ++F+    K N ++
Sbjct: 437 CGSMALLEQGKQVHAHLLCIGIDHEAMVHSAIISMYSKCGSVQEASKIFN--GMKINDII 494

Query: 387 -WNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESM 445
            W  MI+   +HGY ++AI LF  +    +KPD +    +L AC H+G+V  G  YF  M
Sbjct: 495 SWTAMINGYAEHGYSQEAINLFEKISSVGLKPDYVMFIGVLTACNHAGMVDLGFYYFMLM 554

Query: 446 THDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDM 505
           T+   I P++EH+ CLI+LL +AG   +  + +  MP+  D  +W+ L   CR+HG++D 
Sbjct: 555 TNVYRISPSKEHYGCLIDLLCRAGRLSEAEHIIRSMPFHTDDVVWSTLLRACRVHGDVDR 614

Query: 506 GRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIEN 565
           GR   +QL+  +P S+ TH  L++IY+A G+ +    +R+L+  +   KE+  SW+ + +
Sbjct: 615 GRWTAEQLLQLDPNSAGTHITLANIYAAKGRWKEAAHIRKLMKSKGVIKERGWSWVNVND 674

Query: 566 KVHAFSVSDSLHPMRDVLYSVLEQLAGQMGE 596
           +++AF   D  HP  + + +VL+ L+  +G+
Sbjct: 675 QLNAFVAGDQAHPQSEHITTVLKLLSANIGD 705



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 99/373 (26%), Positives = 172/373 (46%), Gaps = 47/373 (12%)

Query: 78  LKLTQRKTPTTFLSNHLIS-MYFKCGSDVDARKVFDKI----PVKNLFSYNNMLSGYANL 132
           +KL  ++T       H IS  Y   G+  + R++  +     P +N +S +NML   + L
Sbjct: 8   IKLLYKETRVAL---HYISNRYILTGTATECRELIQQPIQEQPAENAYSVHNMLELNSEL 64

Query: 133 ------GMMKHARNLFDNMAERDVVSWNTMIIGYAK-SGAVEEGLKFYKVLRRFSISCNE 185
                 G +  AR +FD M  RD +SW T+I GY   S + E  + F  +        ++
Sbjct: 65  KQLVKQGQLCKARYMFDKMTHRDEISWTTLIAGYVNASDSYEALILFSNMWVHPGPQRDQ 124

Query: 186 FSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDE 245
           F  +  L  C     +     +HG  + +G + +V +SS+++D Y K G++    R+F++
Sbjct: 125 FMISVALKACALGVNICFGELLHGFSVKSGLIHSVFVSSALIDMYMKVGKIEQGCRVFEK 184

Query: 246 TDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELF 305
              R+V++WT +++G                             AGY   G     L  F
Sbjct: 185 MMTRNVVSWTAIIAGLVH--------------------------AGYNMEG-----LLYF 213

Query: 306 TRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKC 365
           + M   ++  + HTF+  L A A    L HGK +H   I+  F  ++ V+++L  MY+KC
Sbjct: 214 SEMWRSKVGYDSHTFAIALKASADSSLLHHGKAIHTQTIKQGFDESSFVINTLATMYNKC 273

Query: 366 GCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVI 425
           G  +   ++F+      + + W T+IS   Q G +E A+  F  M +S V P+K T A +
Sbjct: 274 GKPDYVMRLFEKM-RMPDVVSWTTLISTYVQMGEEEHAVEAFKRMRKSYVSPNKYTFAAV 332

Query: 426 LNACTHSGLVQEG 438
           +++C +    + G
Sbjct: 333 ISSCANLAAAKWG 345



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 68/283 (24%), Positives = 128/283 (45%), Gaps = 14/283 (4%)

Query: 9   GINRKNLPNNCLIQSFLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSL 68
           GI RK++ +   I S  S    G   EA   L  + + G +     L+ +L  C     L
Sbjct: 386 GITRKDIISWSTIISVYS--QGGYAKEAFDYLSWMRREGPKPNEFALSSVLSVCGSMALL 443

Query: 69  KLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSG 128
           + GK+VH HL L         + + +ISMY KCGS  +A K+F+ + + ++ S+  M++G
Sbjct: 444 EQGKQVHAHL-LCIGIDHEAMVHSAIISMYSKCGSVQEASKIFNGMKINDIISWTAMING 502

Query: 129 YANLGMMKHARNLFDNMAERDVVSWNTMIIGYAK----SGAVEEGLKFYKVLRR-FSISC 183
           YA  G  + A NLF+ ++   +     M IG       +G V+ G  ++ ++   + IS 
Sbjct: 503 YAEHGYSQEAINLFEKISSVGLKPDYVMFIGVLTACNHAGMVDLGFYYFMLMTNVYRISP 562

Query: 184 NEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLF 243
           ++  +  ++ +  +   L     +   +    F ++ V+ S+++ A    G++   R   
Sbjct: 563 SKEHYGCLIDLLCRAGRLSEAEHI---IRSMPFHTDDVVWSTLLRACRVHGDVDRGRWTA 619

Query: 244 D---ETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPV 283
           +   + D     T  T+ + YA  G  + A+ +   M  K  +
Sbjct: 620 EQLLQLDPNSAGTHITLANIYAAKGRWKEAAHIRKLMKSKGVI 662


>gi|359493640|ref|XP_002282675.2| PREDICTED: pentatricopeptide repeat-containing protein
           At1g06145-like [Vitis vinifera]
          Length = 464

 Score =  300 bits (769), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 154/446 (34%), Positives = 248/446 (55%), Gaps = 33/446 (7%)

Query: 181 ISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDAR 240
           +S   F+F+ ++  C  + EL     VHG +   GF S+V + +++VD Y   G++ +AR
Sbjct: 6   VSPTSFTFSSLVKACSLVSELGFGEAVHGHIWKYGFDSHVFVQTALVDFYGNAGKIVEAR 65

Query: 241 RLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNP------------------ 282
           R+FDE   RDV  WTTM+S +A+ GDM SA +LF+EMP +N                   
Sbjct: 66  RVFDEMSERDVFAWTTMISVHARTGDMSSARQLFDEMPVRNTASWNAMIDGYSRLRNVES 125

Query: 283 -------------VSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACAS 329
                        +SWTT+IA Y++N   ++AL +F  M    I P++ T ++ + ACA 
Sbjct: 126 AELLFSQMPNRDIISWTTMIACYSQNKQFREALAVFNEMQTNGIDPDEVTMATIISACAH 185

Query: 330 IVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNT 389
           + +L  GK++H + +   F  +  + S+LIDMY+KCG L+    VF     K+N   WN+
Sbjct: 186 LGALDLGKEIHLYAMEMGFDLDVYIGSALIDMYAKCGSLDKSLVVF-FKLRKKNLFCWNS 244

Query: 390 MISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDL 449
           +I  L  HGY E+A+ +F  M R  +KP+ +T   +L ACTH+GLV+EG   F SM+ D 
Sbjct: 245 IIEGLAVHGYAEEALAMFSRMQREKIKPNGVTFISVLGACTHAGLVEEGRKRFLSMSRDF 304

Query: 450 GIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKV 509
            I P  EH+ C+++LL +AG  +  +  +  M  E +S +W AL G C++H N+ + +  
Sbjct: 305 SIPPEIEHYGCMVDLLGKAGLLEDALELVRSMRMEPNSVIWGALLGGCKLHRNLKIAQVA 364

Query: 510 VDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQ-AISWIEIENKVH 568
           V++     P +S  + LL ++Y+ + +   V  +R  + E   +K     SWIE++ K+H
Sbjct: 365 VNESKVLEPNNSGYYTLLVNMYAEVNRWSEVANIRATMKELGVEKTSPGSSWIEMDRKIH 424

Query: 569 AFSVSDSLHPMRDVLYSVLEQLAGQM 594
            F+ SD  H   D +Y++L +L GQ+
Sbjct: 425 QFAASDKSHLASDEIYTLLVELDGQL 450



 Score =  139 bits (349), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 85/328 (25%), Positives = 152/328 (46%), Gaps = 32/328 (9%)

Query: 71  GKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYA 130
           GK V       +      F    +IS++ + G    AR++FD++PV+N  S+N M+ GY+
Sbjct: 59  GKIVEARRVFDEMSERDVFAWTTMISVHARTGDMSSARQLFDEMPVRNTASWNAMIDGYS 118

Query: 131 NLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAG 190
            L  ++ A  LF  M  RD++SW TMI  Y+++    E L  +  ++   I  +E + A 
Sbjct: 119 RLRNVESAELLFSQMPNRDIISWTTMIACYSQNKQFREALAVFNEMQTNGIDPDEVTMAT 178

Query: 191 ILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARD 250
           I++ C  L  L L +++H   +  GF  +V I S+++D YAKCG L  +  +F +   ++
Sbjct: 179 IISACAHLGALDLGKEIHLYAMEMGFDLDVYIGSALIDMYAKCGSLDKSLVVFFKLRKKN 238

Query: 251 VLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMI 310
           +  W +++ G A                                +G  ++AL +F+RM  
Sbjct: 239 LFCWNSIIEGLAV-------------------------------HGYAEEALAMFSRMQR 267

Query: 311 LRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRT-NFRSNTIVMSSLIDMYSKCGCLN 369
            +I+PN  TF S L AC     ++ G++    + R  +          ++D+  K G L 
Sbjct: 268 EKIKPNGVTFISVLGACTHAGLVEEGRKRFLSMSRDFSIPPEIEHYGCMVDLLGKAGLLE 327

Query: 370 DGRQVFDLTDNKENSMLWNTMISALTQH 397
           D  ++      + NS++W  ++     H
Sbjct: 328 DALELVRSMRMEPNSVIWGALLGGCKLH 355



 Score = 72.8 bits (177), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 55/176 (31%), Positives = 90/176 (51%), Gaps = 11/176 (6%)

Query: 15  LPNNCLIQSFLSLIS----KGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKL 70
           +PN  +I S+ ++I+      Q  EA++  + +   GI     T+A I+  CA   +L L
Sbjct: 133 MPNRDII-SWTTMIACYSQNKQFREALAVFNEMQTNGIDPDEVTMATIISACAHLGALDL 191

Query: 71  GKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYA 130
           GK +HL+  +        ++ + LI MY KCGS   +  VF K+  KNLF +N+++ G A
Sbjct: 192 GKEIHLY-AMEMGFDLDVYIGSALIDMYAKCGSLDKSLVVFFKLRKKNLFCWNSIIEGLA 250

Query: 131 NLGMMKHARNLFDNMAERDV----VSWNTMIIGYAKSGAVEEGLK-FYKVLRRFSI 181
             G  + A  +F  M    +    V++ +++     +G VEEG K F  + R FSI
Sbjct: 251 VHGYAEEALAMFSRMQREKIKPNGVTFISVLGACTHAGLVEEGRKRFLSMSRDFSI 306



 Score = 69.3 bits (168), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 60/240 (25%), Positives = 105/240 (43%), Gaps = 32/240 (13%)

Query: 308 MMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGC 367
           M+  ++ P   TFSS + AC+ +  L  G+ VHG + +  F S+  V ++L+D Y   G 
Sbjct: 1   MVQAQVSPTSFTFSSLVKACSLVSELGFGEAVHGHIWKYGFDSHVFVQTALVDFYGNAGK 60

Query: 368 LNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDM-VRSSVK---------- 416
           + + R+VFD    + +   W TMIS   + G    A +LF +M VR++            
Sbjct: 61  IVEARRVFDEMSER-DVFAWTTMISVHARTGDMSSARQLFDEMPVRNTASWNAMIDGYSR 119

Query: 417 ----------------PDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHAC 460
                            D I+   ++   + +   +E L  F  M  + GI P++   A 
Sbjct: 120 LRNVESAELLFSQMPNRDIISWTTMIACYSQNKQFREALAVFNEMQTN-GIDPDEVTMAT 178

Query: 461 LIELLAQAGCSD---QLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQN 517
           +I   A  G  D   ++     +M ++ D Y+ +AL  +    G++D    V  +L  +N
Sbjct: 179 IISACAHLGALDLGKEIHLYAMEMGFDLDVYIGSALIDMYAKCGSLDKSLVVFFKLRKKN 238


>gi|242096978|ref|XP_002438979.1| hypothetical protein SORBIDRAFT_10g029325 [Sorghum bicolor]
 gi|241917202|gb|EER90346.1| hypothetical protein SORBIDRAFT_10g029325 [Sorghum bicolor]
          Length = 723

 Score =  300 bits (769), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 158/544 (29%), Positives = 288/544 (52%), Gaps = 2/544 (0%)

Query: 52  AETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVF 111
           A T  F+ + CA      L + +H     T   +    ++N LI MY   G   DAR+ F
Sbjct: 102 AFTFHFVFRCCAAGAGAGLCRMLHAACLRTMLPSAARIVANPLIHMYASLGLTDDARRAF 161

Query: 112 DKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLK 171
           D++PVK+   +  ++ G    G++  AR L     ER+VVSW ++I GY+++G   + + 
Sbjct: 162 DEVPVKDAVVWATVIGGLVRWGLLDEARRLLVQAPERNVVSWTSLIAGYSRAGRPADAVY 221

Query: 172 FYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYA 231
            +  +    +  +E +  G L+ C KL+ L+  R +H  V          +  +++D YA
Sbjct: 222 CFNCMLSDGVEPDEVAVIGALSACSKLKNLEFGRLLHLLVGKKRIQMTDKLVVTLIDMYA 281

Query: 232 KCGELSDARRLFDETD-ARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIA 290
           KCG+++ A+ +FD     +    W  ++ GY KLG ++ A  LF++M  ++ +++ ++I 
Sbjct: 282 KCGDIAQAQAVFDAVGRGQKPEPWNVIIDGYCKLGHVDIARSLFDQMGARDVITFNSMIT 341

Query: 291 GYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRS 350
           GY  +G  + AL+LF ++    +R +  T  S L ACAS+ +L  G+ +H  + +     
Sbjct: 342 GYIHSGRLRDALQLFMQLRRHGMRADNFTVVSLLTACASLGALPQGRALHASIEQRIVEE 401

Query: 351 NTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDM 410
           +  ++++L+DMY KCG +++   VF     ++    W+ MI+ L  +G    A+  F  M
Sbjct: 402 DVYLVTALVDMYMKCGRVDEATAVFHRMGERDVHT-WSAMIAGLAFNGMGMDALESFCQM 460

Query: 411 VRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGC 470
            R   +P  +T   +L AC+HS L+ EG  +F  M     + P  EH+ C+I+LLA++G 
Sbjct: 461 KRDGFQPTSVTYIAVLTACSHSSLLNEGRQHFNEMRSLHKLHPQIEHYGCMIDLLARSGL 520

Query: 471 SDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSI 530
            D+ M+ ++ MP + ++ +W ++   CR+H NID+ R   + L+   P+  A +  L +I
Sbjct: 521 LDEAMHLVQTMPMQPNAVIWASILSACRVHKNIDLARHAAEHLLKLAPEEDAVYVQLYNI 580

Query: 531 YSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQL 590
           Y    +    +++R L+ E+  KK    S I +  +VH F V+D  HP    + +++E++
Sbjct: 581 YIDSRQWVEAKRIRMLMEEQGVKKTAGYSSITVAGQVHKFVVNDQSHPWTLEIITMMEEI 640

Query: 591 AGQM 594
           A ++
Sbjct: 641 ARRL 644



 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 107/384 (27%), Positives = 182/384 (47%), Gaps = 40/384 (10%)

Query: 21  IQSFLSLIS----KGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHL 76
           + S+ SLI+     G+ ++A+   + +   G+      +   L  C++ K+L+ G+ +HL
Sbjct: 200 VVSWTSLIAGYSRAGRPADAVYCFNCMLSDGVEPDEVAVIGALSACSKLKNLEFGRLLHL 259

Query: 77  HLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPV-KNLFSYNNMLSGYANLGMM 135
            L   +R   T  L   LI MY KCG    A+ VFD +   +    +N ++ GY  LG +
Sbjct: 260 -LVGKKRIQMTDKLVVTLIDMYAKCGDIAQAQAVFDAVGRGQKPEPWNVIIDGYCKLGHV 318

Query: 136 KHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTIC 195
             AR+LFD M  RDV+++N+MI GY  SG + + L+ +  LRR  +  + F+   +LT C
Sbjct: 319 DIARSLFDQMGARDVITFNSMITGYIHSGRLRDALQLFMQLRRHGMRADNFTVVSLLTAC 378

Query: 196 VKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWT 255
             L  L   R +H  +       +V + +++VD Y KCG + +A  +F     RDV TW+
Sbjct: 379 ASLGALPQGRALHASIEQRIVEEDVYLVTALVDMYMKCGRVDEATAVFHRMGERDVHTWS 438

Query: 256 TMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRP 315
            M                               IAG   NG+G  ALE F +M     +P
Sbjct: 439 AM-------------------------------IAGLAFNGMGMDALESFCQMKRDGFQP 467

Query: 316 NQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIV--MSSLIDMYSKCGCLNDGRQ 373
              T+ + L AC+    L  G+Q H   +R+  + +  +     +ID+ ++ G L++   
Sbjct: 468 TSVTYIAVLTACSHSSLLNEGRQ-HFNEMRSLHKLHPQIEHYGCMIDLLARSGLLDEAMH 526

Query: 374 VFDLTDNKENSMLWNTMISALTQH 397
           +      + N+++W +++SA   H
Sbjct: 527 LVQTMPMQPNAVIWASILSACRVH 550


>gi|449484291|ref|XP_004156841.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g14050, mitochondrial-like [Cucumis sativus]
          Length = 611

 Score =  300 bits (769), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 159/475 (33%), Positives = 268/475 (56%), Gaps = 4/475 (0%)

Query: 123 NNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVL-RRFSI 181
           N +L  Y   G++  A  LFD M  RD VSW +++  + K+      L     +     +
Sbjct: 42  NTLLDVYGKCGLIPQALQLFDEMPNRDHVSWASILTAHNKALIPRRTLSMLNTMFTHDGL 101

Query: 182 SCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARR 241
             + F FA I+  C  L  L+L +QVH + +++ F  + V+ SS++D Y KCG+  +AR 
Sbjct: 102 QPDHFVFACIVRACSSLGYLRLGKQVHARFMLSXFCDDEVVKSSLIDMYTKCGQPDEARA 161

Query: 242 LFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKA 301
           +FD    ++ ++WT+M+SGYA+ G    A  LF + P +N  SWT LI+G  ++G G  +
Sbjct: 162 VFDSILFKNSVSWTSMISGYARSGRKCEAMDLFLQAPVRNLFSWTALISGLIQSGHGIYS 221

Query: 302 LELFTRMMILRIR-PNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLID 360
             LF  M    I   +    SS +  CA++  L+ GKQ+HG +I   F S   + ++L+D
Sbjct: 222 FSLFNEMRREGIDIVDPLVLSSVVGGCANLALLELGKQIHGLVIALGFESCLFISNALVD 281

Query: 361 MYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKI 420
           MY+KC  +   + +F     K+  + W ++I    QHG  E+A+ L+ +MV S +KP+++
Sbjct: 282 MYAKCSDILAAKDIFYRMPRKD-VISWTSIIVGTAQHGKAEEALTLYDEMVLSRIKPNEV 340

Query: 421 TLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEK 480
           T   +L AC+H+GLV  G   F SMT D  I P+ +H+ CL++LL+++G  D+  N L+K
Sbjct: 341 TFVGLLYACSHAGLVSRGRELFRSMTTDYSINPSLQHYTCLLDLLSRSGHLDEAENLLDK 400

Query: 481 MPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLV 540
           +P++ D   W +L   C  H N++MG ++ D+++D  P+  +T+ LLS++Y+       V
Sbjct: 401 IPFKPDEPTWASLLSACMRHNNLEMGVRIADRVLDLKPEDPSTYILLSNVYAGAEMWGSV 460

Query: 541 EKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSL-HPMRDVLYSVLEQLAGQM 594
            KVR+L++  + +KE   S I+       F   +S  HPM++ + ++L+ L  +M
Sbjct: 461 SKVRKLMSSMEVRKEPGYSSIDFGKDSQVFHAGESCDHPMKNEICNLLKDLDAEM 515



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 107/389 (27%), Positives = 189/389 (48%), Gaps = 38/389 (9%)

Query: 42  LLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKC 101
           +    G++      A I++ C+    L+LGK+VH    L+        + + LI MY KC
Sbjct: 95  MFTHDGLQPDHFVFACIVRACSSLGYLRLGKQVHARFMLSXF-CDDEVVKSSLIDMYTKC 153

Query: 102 GSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYA 161
           G   +AR VFD I  KN  S+ +M+SGYA  G    A +LF     R++ SW  +I G  
Sbjct: 154 GQPDEARAVFDSILFKNSVSWTSMISGYARSGRKCEAMDLFLQAPVRNLFSWTALISGLI 213

Query: 162 KSGAVEEGLKFYKVLRRFSIS-CNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNV 220
           +SG        +  +RR  I   +    + ++  C  L  L+L +Q+HG V+  GF S +
Sbjct: 214 QSGHGIYSFSLFNEMRREGIDIVDPLVLSSVVGGCANLALLELGKQIHGLVIALGFESCL 273

Query: 221 VISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEK 280
            IS+++VD YAKC ++  A+ +F     +DV++WT+++ G A+ G  E A  L++EM   
Sbjct: 274 FISNALVDMYAKCSDILAAKDIFYRMPRKDVISWTSIIVGTAQHGKAEEALTLYDEM--- 330

Query: 281 NPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVH 340
                                       ++ RI+PN+ TF   L AC+    +  G+++ 
Sbjct: 331 ----------------------------VLSRIKPNEVTFVGLLYACSHAGLVSRGRELF 362

Query: 341 GFLIRTNFRSNTIVM--SSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHG 398
             +  T++  N  +   + L+D+ S+ G L++   + D    K +   W +++SA  +H 
Sbjct: 363 RSMT-TDYSINPSLQHYTCLLDLLSRSGHLDEAENLLDKIPFKPDEPTWASLLSACMRHN 421

Query: 399 YDEQAIRLFHDMVRSSVKPDKITLAVILN 427
             E  +R+   ++   +KP+  +  ++L+
Sbjct: 422 NLEMGVRIADRVL--DLKPEDPSTYILLS 448



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 72/247 (29%), Positives = 123/247 (49%), Gaps = 40/247 (16%)

Query: 192 LTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDV 251
           L +C + +      ++H Q++  GF  + ++S++++D Y KCG +  A +LFDE   RD 
Sbjct: 10  LQLCARRQSASAAGELHSQIIKAGFDKSSLLSNTLLDVYGKCGLIPQALQLFDEMPNRDH 69

Query: 252 LTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMIL 311
           ++W ++++ + K         + N M              +T +GL              
Sbjct: 70  VSWASILTAHNKALIPRRTLSMLNTM--------------FTHDGL-------------- 101

Query: 312 RIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDG 371
             +P+   F+  + AC+S+  L+ GKQVH   + + F  + +V SSLIDMY+KCG  ++ 
Sbjct: 102 --QPDHFVFACIVRACSSLGYLRLGKQVHARFMLSXFCDDEVVKSSLIDMYTKCGQPDEA 159

Query: 372 RQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTH 431
           R VFD    K NS+ W +MIS   + G   +A+ LF   +++ V+      A+I      
Sbjct: 160 RAVFDSILFK-NSVSWTSMISGYARSGRKCEAMDLF---LQAPVRNLFSWTALI------ 209

Query: 432 SGLVQEG 438
           SGL+Q G
Sbjct: 210 SGLIQSG 216



 Score = 66.6 bits (161), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 62/267 (23%), Positives = 118/267 (44%), Gaps = 37/267 (13%)

Query: 27  LISKGQLSEAISSLDLLAQRGIRLPAE-TLAFILQQCAESKSLKLGKRVHLHLKLTQRKT 85
           LI  G    + S  + + + GI +     L+ ++  CA    L+LGK++H  L +     
Sbjct: 212 LIQSGHGIYSFSLFNEMRREGIDIVDPLVLSSVVGGCANLALLELGKQIH-GLVIALGFE 270

Query: 86  PTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNM 145
              F+SN L+ MY KC   + A+ +F ++P K++ S+ +++ G A  G  + A  L+D M
Sbjct: 271 SCLFISNALVDMYAKCSDILAAKDIFYRMPRKDVISWTSIIVGTAQHGKAEEALTLYDEM 330

Query: 146 AERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTR 205
                                        VL R  I  NE +F G+L  C     +   R
Sbjct: 331 -----------------------------VLSR--IKPNEVTFVGLLYACSHAGLVSRGR 359

Query: 206 QVHGQVLVTGFLSNVVIS--SSIVDAYAKCGELSDARRLFDETDAR-DVLTWTTMVSGYA 262
           ++  + + T +  N  +   + ++D  ++ G L +A  L D+   + D  TW +++S   
Sbjct: 360 ELF-RSMTTDYSINPSLQHYTCLLDLLSRSGHLDEAENLLDKIPFKPDEPTWASLLSACM 418

Query: 263 KLGDMESASKLFNEMPEKNPVSWTTLI 289
           +  ++E   ++ + + +  P   +T I
Sbjct: 419 RHNNLEMGVRIADRVLDLKPEDPSTYI 445


>gi|225445484|ref|XP_002282063.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 533

 Score =  300 bits (769), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 171/525 (32%), Positives = 277/525 (52%), Gaps = 21/525 (4%)

Query: 83  RKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNL----FSYNNMLSGYA---NLGMM 135
           +K    + SN L S+  KC +    +++   +   +L    F+   +LS  A   N    
Sbjct: 3   QKAVINYRSNTLNSLLKKCRALSQLKQIHANLLQSHLPESPFAIGQLLSLAATSNNPSFF 62

Query: 136 KHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTIC 195
            HA  +F N++ R++  +N+MI GY  S +    +  Y  +  + +  N ++F  ++  C
Sbjct: 63  SHACLIFQNLSLRNIFMYNSMIRGYVLSHSPTRAILCYLDMLNYGLLANNYTFPPLIKAC 122

Query: 196 VKLEELK--LTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLT 253
             L      +   VH  V+  GF  +  + S++++ Y+   ++  AR LFD    RDV+ 
Sbjct: 123 TTLGSSSKLIGCLVHAHVVTFGFDEDPFVVSALIEFYSLNFDMGTARTLFDRIPNRDVVL 182

Query: 254 WTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRI 313
           WT M+ GY K+GD+E A  LF +MPE+N +SW+ ++A Y+R G  ++ L LF RM     
Sbjct: 183 WTAMIDGYGKMGDVEHARILFEDMPERNAISWSAVMAAYSRVGDFKEVLCLFRRMQEAGT 242

Query: 314 RPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQ 373
            PN+    S L ACA + +L  G  VH +  + NF SN I+ ++L+DMYSKCGC+     
Sbjct: 243 MPNESVLVSVLTACAHLGALAQGLWVHSYAKQCNFDSNPILATALVDMYSKCGCVESALS 302

Query: 374 VFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSG 433
            F    NK+    WN MIS +  +G   +++ LF+ M+ +  +P + T   +L ACTH+ 
Sbjct: 303 TFQGIPNKDAGA-WNAMISGVAMNGDAWKSLELFNKMISNGTQPTETTFVAVLTACTHAR 361

Query: 434 LVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEH-------D 486
           LV+EGL  FE M+ + G+ P  EH+ACL++L+A+AG    ++ + EK   E        D
Sbjct: 362 LVKEGLKLFEQMSSNYGVEPQLEHYACLVDLMARAG----MLAEAEKFIEEKMGGLGRGD 417

Query: 487 SYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQL 546
           + +W A+ G CR +GNI++G +V  +L D       TH L  ++Y   G     ++VR+L
Sbjct: 418 ANVWGAMLGACRTYGNIEVGNRVWKKLADMGVADCGTHVLSYNLYREAGWDMEAKRVRRL 477

Query: 547 INERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLA 591
           I+E   KK+   S IE++  V  F   D  H     +   L+ L+
Sbjct: 478 ISEAGMKKKPGCSIIEVDGTVEEFLAGDLSHSQAPQICKTLDSLS 522


>gi|356528072|ref|XP_003532629.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62260,
           mitochondrial-like [Glycine max]
          Length = 647

 Score =  300 bits (769), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 197/637 (30%), Positives = 311/637 (48%), Gaps = 100/637 (15%)

Query: 3   SNFSPRGINRKNLPNNCLIQSFLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQC 62
           +N SP  +NR N       +   +LI  G+LSEA +  D +  R      +T+ +     
Sbjct: 34  NNSSP--LNRSN-------KKISNLIRSGRLSEARALFDSMKHR------DTVTWNSMIT 78

Query: 63  AESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKC-GSDV--DARKVFDKIPVKNL 119
                 ++ +   L  ++ +R   +    N ++S YF C GS    + R++F+ +P ++ 
Sbjct: 79  GYVHRREIARARQLFDEMPRRDVVSW---NLIVSGYFSCRGSRFVEEGRRLFELMPQRDC 135

Query: 120 FSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVL-RR 178
            S+N ++SGYA  G M  A  LF+ M ER+ VS N +I G+  +G V+  + F++ +   
Sbjct: 136 VSWNTVISGYAKNGRMDQALKLFNAMPERNAVSSNALITGFLLNGDVDSAVDFFRTMPEH 195

Query: 179 FSISCNEF-----------SFAGILTICVKLEELKLTRQVHG-QVLVTG----------- 215
           +S S +               AGIL  C   ++      VH    L+ G           
Sbjct: 196 YSTSLSALISGLVRNGELDMAAGILCECGNGDD----DLVHAYNTLIAGYGQRGHVEEAR 251

Query: 216 -------------------FLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTT 256
                              F  NVV  +S++  Y K G++  AR LFD    +D  +W T
Sbjct: 252 RLFDGIPDDRGDGDEGQRRFRRNVVSWNSMMMCYVKAGDIVSARELFDRMVEQDTCSWNT 311

Query: 257 MVSGYAKLGDMESASKLFNEMP-------------------------------EKNPVSW 285
           M+SGY ++ +ME ASKLF EMP                                KN +SW
Sbjct: 312 MISGYVQISNMEEASKLFREMPIPDVLSWNLIVSGFAQKGDLNLAKDFFERMPLKNLISW 371

Query: 286 TTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIR 345
            ++IAGY +N   + A++LF+RM     RP++HT SS +  C  +V+L  GKQ+H  + +
Sbjct: 372 NSIIAGYEKNEDYKGAIQLFSRMQFEGERPDRHTLSSVMSVCTGLVNLYLGKQIHQLVTK 431

Query: 346 TNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIR 405
                ++ + +SLI MYS+CG + D   VF+     ++ + WN MI     HG   +A+ 
Sbjct: 432 IVI-PDSPINNSLITMYSRCGAIVDACTVFNEIKLYKDVITWNAMIGGYASHGLAAEALE 490

Query: 406 LFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELL 465
           LF  M R  + P  IT   ++NAC H+GLV+EG   F+SM +D GI    EH A L+++L
Sbjct: 491 LFKLMKRLKIHPTYITFISVMNACAHAGLVEEGRRQFKSMINDYGIERRVEHFASLVDIL 550

Query: 466 AQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHG 525
            + G   + M+ +  MP++ D  +W AL   CR+H N+++     D LI   P+SSA + 
Sbjct: 551 GRQGQLQEAMDLINTMPFKPDKAVWGALLSACRVHNNVELALVAADALIRLEPESSAPYV 610

Query: 526 LLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIE 562
           LL +IY+ LG+    E VR L+ E+  KK+   SW++
Sbjct: 611 LLYNIYANLGQWDDAESVRVLMEEKNVKKQAGYSWVD 647


>gi|449449649|ref|XP_004142577.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g08510-like [Cucumis sativus]
          Length = 589

 Score =  300 bits (769), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 148/443 (33%), Positives = 246/443 (55%), Gaps = 1/443 (0%)

Query: 135 MKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTI 194
           + +A  LFD + +  V  +N  I  ++  G        Y  +     S N++SF  +   
Sbjct: 32  LPYACTLFDQIPKPSVYLYNKFIQTFSSIGHPHRCWLLYCQMCSQGCSPNQYSFTFLFPA 91

Query: 195 CVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTW 254
           C  L  +   + +H     +GF S++   ++++D YAK G L  AR+LFDE   RD+ TW
Sbjct: 92  CASLFNVYPGQMLHSHFCKSGFASDMFAMTALLDMYAKLGMLRSARQLFDEMPVRDIPTW 151

Query: 255 TTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILR-I 313
            ++++GYA+ G ME+A +LFN+MP +N +SWT LI+GY +NG   KALE+F  +   +  
Sbjct: 152 NSLIAGYARSGHMEAALELFNKMPVRNVISWTALISGYAQNGKYAKALEMFIGLENEKGT 211

Query: 314 RPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQ 373
           +PN+ + +S L AC+ + +L  GK++  +     F  N  V +++++++++CG + + +Q
Sbjct: 212 KPNEVSIASVLPACSQLGALDIGKRIEAYARNNGFFKNAYVSNAVLELHARCGNIEEAQQ 271

Query: 374 VFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSG 433
           VFD   +K N   WNTMI  L  HG    A++L+  M+   ++PD +T   +L ACTH G
Sbjct: 272 VFDEIGSKRNLCSWNTMIMGLAVHGRCIDALQLYDQMLIRKMRPDDVTFVGLLLACTHGG 331

Query: 434 LVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNAL 493
           +V EG   FESM     + P  EH+ CL++LL +AG   +  N ++ MP   DS +W  L
Sbjct: 332 MVAEGRQLFESMESKFQVAPKLEHYGCLVDLLGRAGELQEAYNLIQNMPMAPDSVIWGTL 391

Query: 494 HGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFK 553
            G C  HGN+++G    + L    P +   + +LS+IY+  G    V ++R+++      
Sbjct: 392 LGACSFHGNVELGEVAAESLFKLEPWNPGNYVILSNIYALAGDWSGVARLRKMMKGGHIT 451

Query: 554 KEQAISWIEIENKVHAFSVSDSL 576
           K    S+IE+ + +H F V D +
Sbjct: 452 KRAGYSYIEVGDGIHEFIVEDRI 474



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 90/349 (25%), Positives = 172/349 (49%), Gaps = 37/349 (10%)

Query: 54  TLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDK 113
           +  F+   CA   ++  G+ +H H   +   +   F    L+ MY K G    AR++FD+
Sbjct: 84  SFTFLFPACASLFNVYPGQMLHSHFCKSGFAS-DMFAMTALLDMYAKLGMLRSARQLFDE 142

Query: 114 IPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFY 173
           +PV+++ ++N++++GYA  G M+ A  LF+ M  R+V+SW  +I GYA++G   + L+ +
Sbjct: 143 MPVRDIPTWNSLIAGYARSGHMEAALELFNKMPVRNVISWTALISGYAQNGKYAKALEMF 202

Query: 174 KVLR-RFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAK 232
             L        NE S A +L  C +L  L + +++       GF  N  +S+++++ +A+
Sbjct: 203 IGLENEKGTKPNEVSIASVLPACSQLGALDIGKRIEAYARNNGFFKNAYVSNAVLELHAR 262

Query: 233 CGELSDARRLFDETDA-RDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAG 291
           CG + +A+++FDE  + R++ +W TM+ G A                             
Sbjct: 263 CGNIEEAQQVFDEIGSKRNLCSWNTMIMGLAV---------------------------- 294

Query: 292 YTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSN 351
              +G    AL+L+ +M+I ++RP+  TF   L AC     +  G+Q+   +  + F+  
Sbjct: 295 ---HGRCIDALQLYDQMLIRKMRPDDVTFVGLLLACTHGGMVAEGRQLFESM-ESKFQVA 350

Query: 352 TIV--MSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHG 398
             +     L+D+  + G L +   +        +S++W T++ A + HG
Sbjct: 351 PKLEHYGCLVDLLGRAGELQEAYNLIQNMPMAPDSVIWGTLLGACSFHG 399



 Score =  105 bits (261), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 67/258 (25%), Positives = 131/258 (50%), Gaps = 16/258 (6%)

Query: 263 KLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSS 322
           +L D+  A  LF+++P+ +   +   I  ++  G   +   L+ +M      PNQ++F+ 
Sbjct: 28  QLPDLPYACTLFDQIPKPSVYLYNKFIQTFSSIGHPHRCWLLYCQMCSQGCSPNQYSFTF 87

Query: 323 CLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKE 382
              ACAS+ ++  G+ +H    ++ F S+   M++L+DMY+K G L   RQ+FD    ++
Sbjct: 88  LFPACASLFNVYPGQMLHSHFCKSGFASDMFAMTALLDMYAKLGMLRSARQLFDEMPVRD 147

Query: 383 NSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYF 442
               WN++I+   + G+ E A+ LF+ M   +V    I+   +++    +G   + L  F
Sbjct: 148 IPT-WNSLIAGYARSGHMEAALELFNKMPVRNV----ISWTALISGYAQNGKYAKALEMF 202

Query: 443 ESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMP----YEHDSYLWNA---LHG 495
             + ++ G  PN+   A ++   +Q G  D +  ++E       +  ++Y+ NA   LH 
Sbjct: 203 IGLENEKGTKPNEVSIASVLPACSQLGALD-IGKRIEAYARNNGFFKNAYVSNAVLELHA 261

Query: 496 VCRIHGNIDMGRKVVDQL 513
            C   GNI+  ++V D++
Sbjct: 262 RC---GNIEEAQQVFDEI 276



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 70/291 (24%), Positives = 127/291 (43%), Gaps = 51/291 (17%)

Query: 21  IQSFLSLIS----KGQLSEAISS-LDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVH 75
           + S+ +LIS     G+ ++A+   + L  ++G +    ++A +L  C++  +L +GKR+ 
Sbjct: 179 VISWTALISGYAQNGKYAKALEMFIGLENEKGTKPNEVSIASVLPACSQLGALDIGKRIE 238

Query: 76  LHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVK-NLFSYNNMLSGYANLGM 134
            + +         ++SN ++ ++ +CG+  +A++VFD+I  K NL S+N M+ G A  G 
Sbjct: 239 AYAR-NNGFFKNAYVSNAVLELHARCGNIEEAQQVFDEIGSKRNLCSWNTMIMGLAVHGR 297

Query: 135 MKHARNLFDNMAER----DVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAG 190
              A  L+D M  R    D V++  +++     G V EG + ++            S   
Sbjct: 298 CIDALQLYDQMLIRKMRPDDVTFVGLLLACTHGGMVAEGRQLFE------------SMES 345

Query: 191 ILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETD-AR 249
              +  KLE                          +VD   + GEL +A  L      A 
Sbjct: 346 KFQVAPKLEHY----------------------GCLVDLLGRAGELQEAYNLIQNMPMAP 383

Query: 250 DVLTWTTMVSGYAKLGDME----SASKLFNEMPEKNPVSWTTLIAGYTRNG 296
           D + W T++   +  G++E    +A  LF   P  NP ++  L   Y   G
Sbjct: 384 DSVIWGTLLGACSFHGNVELGEVAAESLFKLEPW-NPGNYVILSNIYALAG 433


>gi|356532382|ref|XP_003534752.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09410-like [Glycine max]
          Length = 669

 Score =  300 bits (769), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 174/536 (32%), Positives = 289/536 (53%), Gaps = 32/536 (5%)

Query: 94  LISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSW 153
           +I  Y K G   DARKVFD +  +N FS+ +++SGY + G ++ A +LFD M ER+VVSW
Sbjct: 133 MIDGYAKVGRLDDARKVFDNMTQRNAFSWTSLISGYFSCGKIEEALHLFDQMPERNVVSW 192

Query: 154 NTMIIGYAKSGAVEEGLKFYKVLRR-----FSISCNEFSFAGILTICVKLEELKLTRQVH 208
             +++G+A++G ++   +F+ ++       ++     +   G  +   KL      R V 
Sbjct: 193 TMVVLGFARNGLMDHAGRFFYLMPEKNIIAWTAMVKAYLDNGCFSEAYKLFLEMPERNVR 252

Query: 209 G-QVLVTGFLS-----------------NVVISSSIVDAYAKCGELSDARRLFDETDARD 250
              ++++G L                  N V  +++V   A+   +  AR+ FD    +D
Sbjct: 253 SWNIMISGCLRANRVDEAIGLFESMPDRNHVSWTAMVSGLAQNKMIGIARKYFDLMPYKD 312

Query: 251 VLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMI 310
           +  WT M++     G M+ A KLF+++PEKN  SW T+I GY RN    +AL LF  M+ 
Sbjct: 313 MAAWTAMITACVDEGLMDEARKLFDQIPEKNVGSWNTMIDGYARNSYVGEALNLFVLMLR 372

Query: 311 LRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLND 370
              RPN+ T +S + +C  +V L    Q H  +I   F  NT + ++LI +YSK G L  
Sbjct: 373 SCFRPNETTMTSVVTSCDGMVELM---QAHAMVIHLGFEHNTWLTNALITLYSKSGDLCS 429

Query: 371 GRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACT 430
            R VF+   +K+  + W  MI A + HG+   A+++F  M+ S +KPD++T   +L+AC+
Sbjct: 430 ARLVFEQLKSKD-VVSWTAMIVAYSNHGHGHHALQVFARMLVSGIKPDEVTFVGLLSACS 488

Query: 431 HSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKM-PYEHDSYL 489
           H GLV +G   F+S+     + P  EH++CL+++L +AG  D+ M+ +  + P   D  +
Sbjct: 489 HVGLVHQGRRLFDSIKGTYNLTPKAEHYSCLVDILGRAGLVDEAMDVVATIPPSARDEAV 548

Query: 490 WNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINE 549
             AL G CR+HG++ +   + ++L++  P SS  + LL++ Y+A G+     KVR+ + E
Sbjct: 549 LVALLGACRLHGDVAIANSIGEKLLELEPSSSGGYVLLANTYAAEGQWDEFAKVRKRMRE 608

Query: 550 RQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQ----LAGQMGEDAPSL 601
           R  K+    S I+I  K H F V +  HP  + +Y +L+Q    L  +MG    +L
Sbjct: 609 RNVKRIPGYSQIQITGKNHVFVVGERSHPQIEEIYRLLQQNLQPLMREMGSTPENL 664



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 125/477 (26%), Positives = 211/477 (44%), Gaps = 82/477 (17%)

Query: 80  LTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHAR 139
           L +R    T L  H        G   +ARK+FD++P ++  SYN+M++ Y     +  A 
Sbjct: 65  LHKRNVEITILGRH--------GKLDEARKLFDEMPQRDDVSYNSMIAVYLKNKDLLEAE 116

Query: 140 NLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLE 199
            +F  M +R+VV+ + MI GYAK G +++  K +  + +     N FS+           
Sbjct: 117 TVFKEMPQRNVVAESAMIDGYAKVGRLDDARKVFDNMTQR----NAFSW----------- 161

Query: 200 ELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVS 259
                                   +S++  Y  CG++ +A  LFD+   R+V++WT +V 
Sbjct: 162 ------------------------TSLISGYFSCGKIEEALHLFDQMPERNVVSWTMVVL 197

Query: 260 GYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHT 319
           G+A+ G M+ A + F  MPEKN ++WT ++  Y  NG   +A +LF  M    +R     
Sbjct: 198 GFARNGLMDHAGRFFYLMPEKNIIAWTAMVKAYLDNGCFSEAYKLFLEMPERNVRSWNIM 257

Query: 320 FSSCLC------ACASIVSLKHGKQVHGFLIRTNFRSNTIV--------------MSSLI 359
            S CL       A     S+     V    + +    N ++              M++  
Sbjct: 258 ISGCLRANRVDEAIGLFESMPDRNHVSWTAMVSGLAQNKMIGIARKYFDLMPYKDMAAWT 317

Query: 360 DMYSKC---GCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVK 416
            M + C   G +++ R++FD    K N   WNTMI    ++ Y  +A+ LF  M+RS  +
Sbjct: 318 AMITACVDEGLMDEARKLFDQIPEK-NVGSWNTMIDGYARNSYVGEALNLFVLMLRSCFR 376

Query: 417 PDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAG--CSDQL 474
           P++ T+  ++ +C   G+V+  L    +M   LG   N      LI L +++G  CS +L
Sbjct: 377 PNETTMTSVVTSC--DGMVE--LMQAHAMVIHLGFEHNTWLTNALITLYSKSGDLCSARL 432

Query: 475 MNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQN--PQSSATHGLLSS 529
           + +  K     D   W A+      HG+     +V  +++     P      GLLS+
Sbjct: 433 VFEQLK---SKDVVSWTAMIVAYSNHGHGHHALQVFARMLVSGIKPDEVTFVGLLSA 486


>gi|356502293|ref|XP_003519954.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Glycine max]
          Length = 1047

 Score =  300 bits (768), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 176/568 (30%), Positives = 291/568 (51%), Gaps = 69/568 (12%)

Query: 27  LISKGQLSEAISSLDLLAQ---RGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQR 83
           L++ G L     S  +  Q    GI     T   IL+ C+  +++ LG+++H  +  T  
Sbjct: 445 LVAYGLLDNLNESFKIFTQMQMEGIEPNQFTYPSILRTCSSLRAVDLGEQIHTQVLKTGF 504

Query: 84  KTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFD 143
           +    ++S+ LI MY                               A LG + HA  +F 
Sbjct: 505 QF-NVYVSSVLIDMY-------------------------------AKLGKLDHALKIFR 532

Query: 144 NMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKL 203
            + E+DVVSW  MI GYA+     E L  +K ++   I  +   FA  ++ C  ++ L  
Sbjct: 533 RLKEKDVVSWTAMIAGYAQHEKFAEALNLFKEMQDQGIHSDNIGFASAISACAGIQALNQ 592

Query: 204 TRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAK 263
            +Q+H Q  V+G+  ++ + +++V  YA+C                              
Sbjct: 593 GQQIHAQACVSGYSDDLSVGNALVSLYARC------------------------------ 622

Query: 264 LGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSC 323
            G +  A   F+++  K+ +SW +LI+G+ ++G  ++AL LF++M       N  TF   
Sbjct: 623 -GKVRDAYFAFDKIFSKDNISWNSLISGFAQSGHCEEALSLFSQMSKAGQEINSFTFGPA 681

Query: 324 LCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDG-RQVFDLTDNKE 382
           + A A++ ++K GKQ+H  +I+T   S T V + LI +Y+KCG ++D  RQ F++ +  E
Sbjct: 682 VSAAANVANVKLGKQIHAMIIKTGHDSETEVSNVLITLYAKCGNIDDAERQFFEMPEKNE 741

Query: 383 NSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYF 442
            S  WN M++  +QHG+  +A+ LF DM +  V P+ +T   +L+AC+H GLV EG+ YF
Sbjct: 742 IS--WNAMLTGYSQHGHGFKALSLFEDMKQLGVLPNHVTFVGVLSACSHVGLVDEGIKYF 799

Query: 443 ESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGN 502
           +SM    G++P  EH+AC+++LL ++G   +    +E+MP + D+ +   L   C +H N
Sbjct: 800 QSMREVHGLVPKPEHYACVVDLLGRSGLLSRARRFVEEMPIQPDAMVCRTLLSACIVHKN 859

Query: 503 IDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIE 562
           ID+G      L++  P+ SAT+ LLS++Y+  GK    ++ RQ++ +R  KKE   SWIE
Sbjct: 860 IDIGEFAASHLLELEPKDSATYVLLSNMYAVTGKWGCRDRTRQMMKDRGVKKEPGRSWIE 919

Query: 563 IENKVHAFSVSDSLHPMRDVLYSVLEQL 590
           + N VHAF   D  HP  D +Y  L  L
Sbjct: 920 VNNSVHAFFAGDQKHPNVDKIYEYLRDL 947



 Score =  163 bits (412), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 114/437 (26%), Positives = 199/437 (45%), Gaps = 36/437 (8%)

Query: 99  FKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMII 158
           F C   + AR +       +LF  N ++  Y   G +  A+ +FD + +RD VSW  M+ 
Sbjct: 186 FHCVEKIHARTITHGYE-NSLFVCNPLIDLYFKNGFLNSAKKVFDGLQKRDSVSWVAMLS 244

Query: 159 GYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLS 218
           G ++SG  EE +  +  +    +    + F+ +L+ C K+E  K+  Q+HG VL  GF  
Sbjct: 245 GLSQSGCEEEAVLLFCQMHTSGVYPTPYIFSSVLSACTKVEFYKVGEQLHGLVLKQGF-- 302

Query: 219 NVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMP 278
                                        + +      +V+ Y++LG+   A ++FN M 
Sbjct: 303 -----------------------------SLETYVCNALVTLYSRLGNFIPAEQVFNAML 333

Query: 279 EKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQ 338
           +++ VS+ +LI+G ++ G   KALELF +M +  ++P+  T +S L AC+S+ +L  GKQ
Sbjct: 334 QRDEVSYNSLISGLSQQGYSDKALELFKKMCLDCLKPDCVTVASLLSACSSVGALLVGKQ 393

Query: 339 VHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHG 398
            H + I+    S+ I+  +L+D+Y KC  +    + F L+   EN +LWN M+ A     
Sbjct: 394 FHSYAIKAGMSSDIILEGALLDLYVKCSDIKTAHEFF-LSTETENVVLWNVMLVAYGLLD 452

Query: 399 YDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHH 458
              ++ ++F  M    ++P++ T   IL  C+    V  G     +     G   N    
Sbjct: 453 NLNESFKIFTQMQMEGIEPNQFTYPSILRTCSSLRAVDLG-EQIHTQVLKTGFQFNVYVS 511

Query: 459 ACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNP 518
           + LI++ A+ G  D  +    ++  E D   W A+      H        +  ++ DQ  
Sbjct: 512 SVLIDMYAKLGKLDHALKIFRRLK-EKDVVSWTAMIAGYAQHEKFAEALNLFKEMQDQGI 570

Query: 519 QSSATHGLLSSIYSALG 535
            S    G  S+I +  G
Sbjct: 571 HSDNI-GFASAISACAG 586



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 121/565 (21%), Positives = 238/565 (42%), Gaps = 110/565 (19%)

Query: 34  SEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNH 93
           +  I+ L L+ +RG+R  ++T  ++L  C  S     G ++H                  
Sbjct: 50  ANGINFLHLMEERGVRANSQTYLWLLDGCLSSGWFSDGWKLH----------------GK 93

Query: 94  LISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSW 153
           ++ M F C   V   ++ D                Y   G +  A  +FD M  R +  W
Sbjct: 94  ILKMGF-CAEVVLCERLMDL---------------YIAFGDLDGAVTVFDEMPVRPLSCW 137

Query: 154 NTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLE-ELKLTRQVHGQVL 212
           N ++  +         L  ++ + +  +  +E ++AG+L  C   +       ++H + +
Sbjct: 138 NKVLHRFVAGKMAGRVLGLFRRMLQEKVKPDERTYAGVLRGCGGGDVPFHCVEKIHARTI 197

Query: 213 VTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASK 272
             G+ +++ + + ++D Y K G L+ A+++FD    RD ++W  M+SG            
Sbjct: 198 THGYENSLFVCNPLIDLYFKNGFLNSAKKVFDGLQKRDSVSWVAMLSG------------ 245

Query: 273 LFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVS 332
                               +++G  ++A+ LF +M    + P  + FSS L AC  +  
Sbjct: 246 -------------------LSQSGCEEEAVLLFCQMHTSGVYPTPYIFSSVLSACTKVEF 286

Query: 333 LKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMIS 392
            K G+Q+HG +++  F   T V ++L+ +YS+ G      QVF+    ++  + +N++IS
Sbjct: 287 YKVGEQLHGLVLKQGFSLETYVCNALVTLYSRLGNFIPAEQVFNAMLQRDE-VSYNSLIS 345

Query: 393 ALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGII 452
            L+Q GY ++A+ LF  M    +KPD +T+A +L+AC+  G +  G   F S     G+ 
Sbjct: 346 GLSQQGYSDKALELFKKMCLDCLKPDCVTVASLLSACSSVGALLVG-KQFHSYAIKAGMS 404

Query: 453 PNQEHHACLIELLAQAGCSD------------------------------------QLMN 476
            +      L++L  +  CSD                                    ++  
Sbjct: 405 SDIILEGALLDLYVK--CSDIKTAHEFFLSTETENVVLWNVMLVAYGLLDNLNESFKIFT 462

Query: 477 QLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSA-THGLLSSIYSALG 535
           Q++    E + + + ++   C     +D+G ++  Q++    Q +     +L  +Y+ LG
Sbjct: 463 QMQMEGIEPNQFTYPSILRTCSSLRAVDLGEQIHTQVLKTGFQFNVYVSSVLIDMYAKLG 522

Query: 536 KGRLVEKVRQLINERQFKKEQAISW 560
           K     K+      R+ K++  +SW
Sbjct: 523 KLDHALKIF-----RRLKEKDVVSW 542



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 98/412 (23%), Positives = 181/412 (43%), Gaps = 64/412 (15%)

Query: 27  LISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTP 86
           L   G   EA+     +   G+       + +L  C + +  K+G+++H  L L Q  + 
Sbjct: 246 LSQSGCEEEAVLLFCQMHTSGVYPTPYIFSSVLSACTKVEFYKVGEQLH-GLVLKQGFSL 304

Query: 87  TTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMA 146
            T++ N L+++Y + G+ + A +VF+ +  ++  SYN+++SG +  G    A  LF  M 
Sbjct: 305 ETYVCNALVTLYSRLGNFIPAEQVFNAMLQRDEVSYNSLISGLSQQGYSDKALELFKKMC 364

Query: 147 ERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQ 206
                                        L      C   + A +L+ C  +  L + +Q
Sbjct: 365 -----------------------------LDCLKPDC--VTVASLLSACSSVGALLVGKQ 393

Query: 207 VHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGD 266
            H   +  G  S++++  +++D Y KC ++  A   F  T+  +V+ W  M+  Y  L +
Sbjct: 394 FHSYAIKAGMSSDIILEGALLDLYVKCSDIKTAHEFFLSTETENVVLWNVMLVAYGLLDN 453

Query: 267 MESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCA 326
           +                                ++ ++FT+M +  I PNQ T+ S L  
Sbjct: 454 L-------------------------------NESFKIFTQMQMEGIEPNQFTYPSILRT 482

Query: 327 CASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSML 386
           C+S+ ++  G+Q+H  +++T F+ N  V S LIDMY+K G L+   ++F     K+  + 
Sbjct: 483 CSSLRAVDLGEQIHTQVLKTGFQFNVYVSSVLIDMYAKLGKLDHALKIFRRLKEKD-VVS 541

Query: 387 WNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEG 438
           W  MI+   QH    +A+ LF +M    +  D I  A  ++AC     + +G
Sbjct: 542 WTAMIAGYAQHEKFAEALNLFKEMQDQGIHSDNIGFASAISACAGIQALNQG 593



 Score =  107 bits (268), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 84/354 (23%), Positives = 152/354 (42%), Gaps = 63/354 (17%)

Query: 159 GYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLS 218
            Y+       G+ F  ++    +  N  ++  +L  C+         ++HG++L  GF +
Sbjct: 42  AYSNDEGEANGINFLHLMEERGVRANSQTYLWLLDGCLSSGWFSDGWKLHGKILKMGFCA 101

Query: 219 NVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMP 278
            VV+   ++D Y                                  GD++ A  +F+EMP
Sbjct: 102 EVVLCERLMDLYIA-------------------------------FGDLDGAVTVFDEMP 130

Query: 279 EKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCAC-ASIVSLKHGK 337
            +    W  ++  +    +  + L LF RM+  +++P++ T++  L  C    V     +
Sbjct: 131 VRPLSCWNKVLHRFVAGKMAGRVLGLFRRMLQEKVKPDERTYAGVLRGCGGGDVPFHCVE 190

Query: 338 QVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQH 397
           ++H   I   + ++  V + LID+Y K G LN  ++VFD    K +S+ W  M+S L+Q 
Sbjct: 191 KIHARTITHGYENSLFVCNPLIDLYFKNGFLNSAKKVFDGL-QKRDSVSWVAMLSGLSQS 249

Query: 398 GYDEQAIRLFHDMVRSSVKPDKITLAVILNACT-----------HSGLVQEGL---TY-- 441
           G +E+A+ LF  M  S V P     + +L+ACT           H  ++++G    TY  
Sbjct: 250 GCEEEAVLLFCQMHTSGVYPTPYIFSSVLSACTKVEFYKVGEQLHGLVLKQGFSLETYVC 309

Query: 442 --FESMTHDLG-IIPNQE-----------HHACLIELLAQAGCSDQLMNQLEKM 481
               ++   LG  IP ++            +  LI  L+Q G SD+ +   +KM
Sbjct: 310 NALVTLYSRLGNFIPAEQVFNAMLQRDEVSYNSLISGLSQQGYSDKALELFKKM 363


>gi|449435966|ref|XP_004135765.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 666

 Score =  300 bits (768), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 161/509 (31%), Positives = 272/509 (53%), Gaps = 44/509 (8%)

Query: 125 MLSGYAN--LGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSIS 182
           +L  YAN        A  +F ++   +V  WN +I G  ++  + + + FY    R  I 
Sbjct: 71  LLKCYANPHFSNFDFALKVFSSIPNPNVFIWNIVIKGCLENNKLFKAIYFYG---RMVID 127

Query: 183 C--NEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISS---------------- 224
              N+F++  +   C   + ++  RQ+HG V+  G  S+V I S                
Sbjct: 128 ARPNKFTYPTLFKACSVAQAVQEGRQIHGHVVKHGIGSDVHIKSAGIHMYASFGRLEDAR 187

Query: 225 --------------SIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESA 270
                         +++D Y KCG L  A+ LF +   +++ +W  M++G AK G++  A
Sbjct: 188 KMFYSGESDVVCWNTMIDGYLKCGVLEAAKGLFAQMPVKNIGSWNVMINGLAKGGNLGDA 247

Query: 271 SKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASI 330
            KLF+EM E++ +SW++++ GY   G  ++ALE+F +M     RP +   SS L AC++I
Sbjct: 248 RKLFDEMSERDEISWSSMVDGYISAGRYKEALEIFQQMQREETRPGRFILSSVLAACSNI 307

Query: 331 VSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTM 390
            ++  G+ VH +L R + + + ++ ++L+DMY+KCG L+ G +VF+    +E    WN M
Sbjct: 308 GAIDQGRWVHAYLKRNSIKLDAVLGTALLDMYAKCGRLDMGWEVFEEMKERE-IFTWNAM 366

Query: 391 ISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLG 450
           I  L  HG  E A+ LF  +    +KP+ ITL  +L AC H+G V +GL  F++M    G
Sbjct: 367 IGGLAIHGRAEDALELFSKLQEGRMKPNGITLVGVLTACAHAGFVDKGLRIFQTMREFYG 426

Query: 451 IIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVV 510
           + P  EH+ C+++LL ++G   +  + +  MP + ++ +W AL G CRIHGN D+  +V 
Sbjct: 427 VDPELEHYGCMVDLLGRSGLFSEAEDLINSMPMKPNAAVWGALLGACRIHGNFDLAERVG 486

Query: 511 DQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAF 570
             L++  PQ+S  + LLS+IY+ +G+   V K+R+L+ +R  K    +S +++   VH F
Sbjct: 487 KILLELEPQNSGRYVLLSNIYAKVGRFDDVSKIRKLMKDRGIKTVPGVSIVDLNGTVHEF 546

Query: 571 SVSDSLHPMRDVLYSVLE------QLAGQ 593
            + D  HP    +Y  L+      Q+AG 
Sbjct: 547 KMGDGSHPQMKEIYRKLKIIKERLQMAGH 575


>gi|357150199|ref|XP_003575376.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g33350-like [Brachypodium distachyon]
          Length = 523

 Score =  300 bits (768), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 182/540 (33%), Positives = 286/540 (52%), Gaps = 36/540 (6%)

Query: 58  ILQQCAESKSLKLGKRVHLHLKLTQRKTP--TTFLSNHLISMYFKCGSDVDARKVFDKIP 115
           +L +CA    LK   ++H    +T R     TTF      S+   C     AR++FD  P
Sbjct: 15  VLSRCATLAHLK---QLHGRSVVTARAASQSTTFQLLRFASLRLSCLPY--ARRLFDSTP 69

Query: 116 VKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKV 175
             N+F Y+ MLS YA     +   +  D +A                         F ++
Sbjct: 70  HPNVFLYSAMLSAYAAASPAQAYGH--DALA------------------------LFLRM 103

Query: 176 LRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGE 235
           LRR   + N+F +  +L     +  ++L R +H     +GF +  VI +S++D Y++ G 
Sbjct: 104 LRRGRPAPNQFVYPLVLRAACAIG-VQLVRSIHSHACKSGFHAYDVIRTSLLDGYSRYGM 162

Query: 236 LSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRN 295
           + DAR+LFD    R+V++WT +VSGYA+ G +  A  LF+ MPE++  +W  +I G T+N
Sbjct: 163 MLDARKLFDGLTERNVISWTALVSGYARAGKIGDAIVLFDRMPERDVAAWNAMITGCTQN 222

Query: 296 GLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVM 355
           GL  +A+ + +RM+    + N  T S  L AC  +  LK GK VHG+  R+     + V+
Sbjct: 223 GLFVEAVGICSRMVDEGFQLNGTTVSCVLSACGHLGMLKIGKVVHGYAWRSCVGFGSSVV 282

Query: 356 SSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSV 415
           + LIDMY KCG L + R +FD   ++  +  WN++I+ L  HG+ + AI +F +M    +
Sbjct: 283 NGLIDMYGKCGNLKEARWMFDEFSDRSLTT-WNSLINCLALHGHSKSAIAVFDEMRDEGI 341

Query: 416 KPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLM 475
           +PD +T   +LNACTH G V EGLTYF+ M  +L I P  EH+ C+++LL +AG  +  M
Sbjct: 342 EPDVVTFVGLLNACTHGGFVDEGLTYFKLMCDELRIEPEIEHYGCIVDLLGRAGRFEDAM 401

Query: 476 NQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALG 535
           N +  M  + D  +W +L   CR H  +++    V +L+  NP ++    +L+++YS  G
Sbjct: 402 NVINDMKVQPDEVIWGSLLNACRTHRQLELAEFSVRKLLQLNPNNANYVVMLANLYSEGG 461

Query: 536 KGRLVEKVRQLINERQF-KKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQM 594
               V K+R+L+ E    KK    SWIE++ K H F   D  HP  + +Y  L++LA  M
Sbjct: 462 SWEEVTKIRKLMKEDIMGKKLPGCSWIEVDRKTHRFYSGDDAHPESEDIYDTLDELAASM 521



 Score =  129 bits (323), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 118/453 (26%), Positives = 197/453 (43%), Gaps = 75/453 (16%)

Query: 35  EAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHL 94
           +A++    + +RG   P + +  ++ + A +  ++L + +H H            +   L
Sbjct: 95  DALALFLRMLRRGRPAPNQFVYPLVLRAACAIGVQLVRSIHSH-ACKSGFHAYDVIRTSL 153

Query: 95  ISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWN 154
           +  Y + G  +DARK+FD +  +N+ S+  ++SGYA  G +  A  LFD M ERDV +WN
Sbjct: 154 LDGYSRYGMMLDARKLFDGLTERNVISWTALVSGYARAGKIGDAIVLFDRMPERDVAAWN 213

Query: 155 TMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVL-- 212
            MI G  ++G   E +     +       N  + + +L+ C  L  LK+ + VHG     
Sbjct: 214 AMITGCTQNGLFVEAVGICSRMVDEGFQLNGTTVSCVLSACGHLGMLKIGKVVHGYAWRS 273

Query: 213 VTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASK 272
             GF S+VV  + ++D Y KCG L +AR +FDE   R + TW ++++  A  G  +SA  
Sbjct: 274 CVGFGSSVV--NGLIDMYGKCGNLKEARWMFDEFSDRSLTTWNSLINCLALHGHSKSAIA 331

Query: 273 LFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVS 332
           +F+EM ++                                I P+  TF   L AC     
Sbjct: 332 VFDEMRDEG-------------------------------IEPDVVTFVGLLNACT---- 356

Query: 333 LKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMIS 392
             HG  V   L       + + +   I+ Y   GC+ D                      
Sbjct: 357 --HGGFVDEGLTYFKLMCDELRIEPEIEHY---GCIVD---------------------- 389

Query: 393 ALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNAC-THSGLVQEGLTYFESMTHDLGI 451
            L + G  E A+ + +DM    V+PD++    +LNAC TH    Q  L  F S+   L +
Sbjct: 390 LLGRAGRFEDAMNVINDM---KVQPDEVIWGSLLNACRTHR---QLELAEF-SVRKLLQL 442

Query: 452 IPNQEHHACLIELLAQAGCSDQLMNQLEKMPYE 484
            PN  ++  ++  L   G S + + ++ K+  E
Sbjct: 443 NPNNANYVVMLANLYSEGGSWEEVTKIRKLMKE 475


>gi|326498517|dbj|BAJ98686.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 647

 Score =  300 bits (768), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 169/552 (30%), Positives = 281/552 (50%), Gaps = 38/552 (6%)

Query: 50  LPAE----TLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDV 105
           LPA     T   +   CA  + +  G++V  H  +        +L N L+ MY  CG   
Sbjct: 97  LPASPDTYTHPILAAACAARRDVSEGRQVQSH-AIRHGFGDDLYLRNALMHMYSVCGCLW 155

Query: 106 DARKVFDKIPVKNLFSYNNMLSGYANLG-------------------------------M 134
           DAR+VFD  PV +  S+N +L+ Y + G                               M
Sbjct: 156 DARRVFDAGPVWDAVSWNTILAAYVHAGDVDQAVGVFARMPKRNATAVSSMVSLFGRRGM 215

Query: 135 MKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTI 194
           ++ AR +FD    RD+ +W  MI  + ++    E L  +  +RR     +E     ++  
Sbjct: 216 VEEARGVFDEAECRDIFTWTAMISCFERNDMFAEALHMFSCMRREMWPVDEALMVSVVAA 275

Query: 195 CVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTW 254
           C + E ++     HG V+  G  S + I + ++  Y+ C ++  ARRLFD  D  D  +W
Sbjct: 276 CAQSEVIRNGELCHGLVIRAGLCSLLNIQNVLIHMYSCCLDVVAARRLFDSGDCLDQFSW 335

Query: 255 TTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIR 314
            +M++GY K G +E+A  LF+ MP+K+ VSW+T+I+G  +N     AL +F  M    +R
Sbjct: 336 NSMIAGYLKNGHVENAMTLFSAMPDKDNVSWSTMISGCVQNNQSSHALTVFDNMRAQGVR 395

Query: 315 PNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQV 374
           P++ T  S + AC ++ +L+ GK VH ++ +       ++ +SLIDMY KCG L     V
Sbjct: 396 PDEVTIVSVISACTNLSALEKGKSVHDYVRQNKCYITLVLGTSLIDMYMKCGYLEAAMDV 455

Query: 375 FDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVK-PDKITLAVILNACTHSG 433
           F++ + K  +  WN +I  L  +G   +++ +F +M  SS   P++IT   +L+AC H+G
Sbjct: 456 FNIMEEK-GAPCWNAVIVGLAMNGLVTKSLEIFSEMEASSTAIPNEITFTGVLSACRHAG 514

Query: 434 LVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNAL 493
           LV+EG  +F+ M H   I+PN  H+ C+++LL +AG   +  + +E MP   D   W AL
Sbjct: 515 LVEEGRHFFKLMQHKYQIVPNIRHYGCMVDLLGRAGYVKEAEDLIESMPMSPDVPAWGAL 574

Query: 494 HGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFK 553
            G C  HG  ++G +V  +L++ +P+      +LS+IY+  G  + V  +R  + +R   
Sbjct: 575 LGACWKHGENEVGERVGRKLVNLDPRHDGFQTMLSNIYAKEGMWQSVNDLRDSMKQRHVP 634

Query: 554 KEQAISWIEIEN 565
           K    S +E+ +
Sbjct: 635 KVSGYSVVEMSH 646



 Score =  122 bits (305), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 103/468 (22%), Positives = 197/468 (42%), Gaps = 67/468 (14%)

Query: 149 DVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVH 208
           +  S NT++     +G     L  Y  L     S + ++   +   C    ++   RQV 
Sbjct: 70  NAFSCNTLLKAALLAGMPHLCLPLYTSL---PASPDTYTHPILAAACAARRDVSEGRQVQ 126

Query: 209 GQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDME 268
              +  GF  ++ + ++++  Y+ CG L DARR+FD     D ++W T+++ Y   GD++
Sbjct: 127 SHAIRHGFGDDLYLRNALMHMYSVCGCLWDARRVFDAGPVWDAVSWNTILAAYVHAGDVD 186

Query: 269 SASKLFNEMPEKNPV-------------------------------SWTTLIAGYTRNGL 297
            A  +F  MP++N                                 +WT +I+ + RN +
Sbjct: 187 QAVGVFARMPKRNATAVSSMVSLFGRRGMVEEARGVFDEAECRDIFTWTAMISCFERNDM 246

Query: 298 GQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSS 357
             +AL +F+ M       ++    S + ACA    +++G+  HG +IR    S   + + 
Sbjct: 247 FAEALHMFSCMRREMWPVDEALMVSVVAACAQSEVIRNGELCHGLVIRAGLCSLLNIQNV 306

Query: 358 LIDMYSKCGCLNDGRQVFDLTD------------------NKENSML------------W 387
           LI MYS C  +   R++FD  D                  + EN+M             W
Sbjct: 307 LIHMYSCCLDVVAARRLFDSGDCLDQFSWNSMIAGYLKNGHVENAMTLFSAMPDKDNVSW 366

Query: 388 NTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTH 447
           +TMIS   Q+     A+ +F +M    V+PD++T+  +++ACT+   +++G +  + +  
Sbjct: 367 STMISGCVQNNQSSHALTVFDNMRAQGVRPDEVTIVSVISACTNLSALEKGKSVHDYVRQ 426

Query: 448 DLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGR 507
           +   I        LI++  + G  +  M+    M  E  +  WNA+     ++G +    
Sbjct: 427 NKCYI-TLVLGTSLIDMYMKCGYLEAAMDVFNIME-EKGAPCWNAVIVGLAMNGLVTKSL 484

Query: 508 KVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKE 555
           ++  ++ + +  +       + + SA     LVE+ R      Q K +
Sbjct: 485 EIFSEM-EASSTAIPNEITFTGVLSACRHAGLVEEGRHFFKLMQHKYQ 531



 Score = 75.1 bits (183), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 63/238 (26%), Positives = 106/238 (44%), Gaps = 35/238 (14%)

Query: 206 QVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLG 265
           Q+HGQ + +G L+         DA+A       A RL   T A  +L +           
Sbjct: 22  QIHGQFIASGLLA---------DAFA-------ASRLLLFTSATRLLPFP---------- 55

Query: 266 DMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLC 325
            +  + +L   +   N  S  TL+      G+    L L+T    L   P+ +T      
Sbjct: 56  -IHHSFRLLRLVRCPNAFSCNTLLKAALLAGMPHLCLPLYTS---LPASPDTYTHPILAA 111

Query: 326 ACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSM 385
           ACA+   +  G+QV    IR  F  +  + ++L+ MYS CGCL D R+VFD      +++
Sbjct: 112 ACAARRDVSEGRQVQSHAIRHGFGDDLYLRNALMHMYSVCGCLWDARRVFD-AGPVWDAV 170

Query: 386 LWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFE 443
            WNT+++A    G  +QA+ +F  M     K +   ++ +++     G+V+E    F+
Sbjct: 171 SWNTILAAYVHAGDVDQAVGVFARM----PKRNATAVSSMVSLFGRRGMVEEARGVFD 224



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 67/294 (22%), Positives = 123/294 (41%), Gaps = 52/294 (17%)

Query: 28  ISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPT 87
           +   Q S A++  D +  +G+R    T+  ++  C    +L+ GK VH +++  Q K   
Sbjct: 374 VQNNQSSHALTVFDNMRAQGVRPDEVTIVSVISACTNLSALEKGKSVHDYVR--QNKCYI 431

Query: 88  TF-LSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMA 146
           T  L   LI MY KC                               G ++ A ++F+ M 
Sbjct: 432 TLVLGTSLIDMYMKC-------------------------------GYLEAAMDVFNIME 460

Query: 147 ERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISC-NEFSFAGILTICVK---LEE-- 200
           E+    WN +I+G A +G V + L+ +  +   S +  NE +F G+L+ C     +EE  
Sbjct: 461 EKGAPCWNAVIVGLAMNGLVTKSLEIFSEMEASSTAIPNEITFTGVLSACRHAGLVEEGR 520

Query: 201 --LKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETD-ARDVLTWTTM 257
              KL +  +  V       N+     +VD   + G + +A  L +    + DV  W  +
Sbjct: 521 HFFKLMQHKYQIV------PNIRHYGCMVDLLGRAGYVKEAEDLIESMPMSPDVPAWGAL 574

Query: 258 VSGYAKLGDMESASKLFNEMPEKNPV--SWTTLIAG-YTRNGLGQKALELFTRM 308
           +    K G+ E   ++  ++   +P    + T+++  Y + G+ Q   +L   M
Sbjct: 575 LGACWKHGENEVGERVGRKLVNLDPRHDGFQTMLSNIYAKEGMWQSVNDLRDSM 628


>gi|449444429|ref|XP_004139977.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
           mitochondrial-like [Cucumis sativus]
 gi|449475689|ref|XP_004154524.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
           mitochondrial-like [Cucumis sativus]
          Length = 586

 Score =  300 bits (768), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 172/544 (31%), Positives = 280/544 (51%), Gaps = 70/544 (12%)

Query: 49  RLPAETLAF--ILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVD 106
           RL A+ + +  +++ C    +++  + VH H+  +    P TFL N LI+MY K      
Sbjct: 11  RLSADAITYSELIKCCLVRGAVQQARLVHEHV-FSNGYEPKTFLINTLINMYVK------ 63

Query: 107 ARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAV 166
                                     G++  ARNLFD M +R+VVSW TMI  Y+ S   
Sbjct: 64  -------------------------FGLLDEARNLFDEMPDRNVVSWTTMISAYSNSNLN 98

Query: 167 EEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSI 226
            + L F  ++ R  +  N ++++ +L  C  L  L   RQ+HG +L  G  S+V + S++
Sbjct: 99  HKALDFLILMLREGVRPNMYTYSSVLRACDGLLNL---RQLHGSILKVGLESDVFVRSAL 155

Query: 227 VDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWT 286
           +D Y+                               KLG+   A  +FNEM   + V W 
Sbjct: 156 IDTYS-------------------------------KLGEQHDALNVFNEMITGDLVVWN 184

Query: 287 TLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRT 346
           ++I G+ +N  G + L L+ RM       +Q T +S L AC  +  L+ G+QVH  +++ 
Sbjct: 185 SIIGGFAQNSDGDETLHLYKRMKRADFVADQSTLTSVLRACTGLALLELGRQVHVHVLK- 243

Query: 347 NFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRL 406
            +  + I+ ++L+DMY KCG L D   +F     +++ + W+TMI+ L Q+G+   A++L
Sbjct: 244 -YDQDLILNNALLDMYCKCGSLEDANLLFTRMMTEKDVISWSTMIAGLAQNGFSADALKL 302

Query: 407 FHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLA 466
           F  M     KP+ IT+  +L AC+H+GLV +G  YF+SM    GI P +EH+ C+I+LL 
Sbjct: 303 FEAMKSKGPKPNYITILGVLFACSHAGLVNDGWYYFQSMKEHFGIDPGREHYGCIIDLLG 362

Query: 467 QAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGL 526
           +AG  D+ +  + +M +E D+  W  L G CR+H N+D+      +++  +P  + T+ L
Sbjct: 363 RAGKLDEAVKLIHEMNHEPDAVTWRILLGACRVHKNVDLAIYAAKEILKLDPADAGTYIL 422

Query: 527 LSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSV 586
           LS+IY+   K   V +VR+ +  R  KK+   SWIE+  +VHAF + D+ HP  + +   
Sbjct: 423 LSNIYANSQKWEDVAEVRRKMRTRGVKKDPGCSWIEVSKQVHAFILGDNSHPRIEEIKRE 482

Query: 587 LEQL 590
           L QL
Sbjct: 483 LSQL 486



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 83/325 (25%), Positives = 154/325 (47%), Gaps = 40/325 (12%)

Query: 170 LKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDA 229
           +K  + + R  +S +  +++ ++  C+    ++  R VH  V   G+     + +++++ 
Sbjct: 1   MKAMEAMHRNRLSADAITYSELIKCCLVRGAVQQARLVHEHVFSNGYEPKTFLINTLINM 60

Query: 230 YAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLI 289
           Y K G L +AR LFDE   R+V++WTTM+S                              
Sbjct: 61  YVKFGLLDEARNLFDEMPDRNVVSWTTMIS------------------------------ 90

Query: 290 AGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFR 349
             Y+ + L  KAL+    M+   +RPN +T+SS L AC  +++L   +Q+HG +++    
Sbjct: 91  -AYSNSNLNHKALDFLILMLREGVRPNMYTYSSVLRACDGLLNL---RQLHGSILKVGLE 146

Query: 350 SNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHD 409
           S+  V S+LID YSK G  +D   VF+     +  ++WN++I    Q+   ++ + L+  
Sbjct: 147 SDVFVRSALIDTYSKLGEQHDALNVFNEMITGD-LVVWNSIIGGFAQNSDGDETLHLYKR 205

Query: 410 MVRSSVKPDKITLAVILNACTHSGLVQEGL-TYFESMTHDLGIIPNQEHHACLIELLAQA 468
           M R+    D+ TL  +L ACT   L++ G   +   + +D  +I N      L+++  + 
Sbjct: 206 MKRADFVADQSTLTSVLRACTGLALLELGRQVHVHVLKYDQDLILNN----ALLDMYCKC 261

Query: 469 GCSDQLMNQLEKMPYEHDSYLWNAL 493
           G  +       +M  E D   W+ +
Sbjct: 262 GSLEDANLLFTRMMTEKDVISWSTM 286


>gi|222636196|gb|EEE66328.1| hypothetical protein OsJ_22569 [Oryza sativa Japonica Group]
          Length = 1287

 Score =  300 bits (768), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 166/551 (30%), Positives = 292/551 (52%), Gaps = 5/551 (0%)

Query: 47  GIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTT--FLSNHLISMYFKCGSD 104
            +R    T  F+ + C+ S   +      LH    +   P+   F++N LI MY + G  
Sbjct: 39  AVRPDGFTFHFLFK-CSSSSRPRALLCTMLHAACLRTMLPSAAPFVANSLIHMYTELGLA 97

Query: 105 VDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSG 164
            D R+ FD+IPVK+  S+  ++SG A +GM+  AR L      RDV+SW ++I  Y+++ 
Sbjct: 98  GDVRRAFDEIPVKDAVSWTMVISGLAKMGMLSDARLLLAQAPVRDVISWTSLIAAYSRAD 157

Query: 165 AVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISS 224
             +E +  +K +    I+ ++ +  G+L+ C +L++L+L   +H  V   G   +  +  
Sbjct: 158 RAKEAVDCFKNMLSEGIAPDDVTVIGVLSACSQLKDLELGCSLHLLVKEKGMSMSENLVV 217

Query: 225 SIVDAYAKCGELSDARRLFDETD-ARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPV 283
           +++D YAKCG+   AR +FD     R   +W  ++ GY K G ++ A  LF++M  ++ +
Sbjct: 218 ALIDMYAKCGDFGHAREVFDAVGRGRRPQSWNAIIDGYCKHGHVDVARSLFDQMEVRDII 277

Query: 284 SWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFL 343
           ++ ++I GY  +G  ++AL LF  M    +R +  T  S L ACAS+ +L  G+ +H  +
Sbjct: 278 TFNSMITGYIHSGQLREALLLFMNMRRHDLRVDNFTVVSLLSACASLGALPQGRALHACI 337

Query: 344 IRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQA 403
                 ++  + ++L+DMY KCG +N+   VF     K +   W  MI+ L  +G  +  
Sbjct: 338 ELRLVETDIYIGTALLDMYMKCGRVNEATIVFQRM-GKRDVHAWTAMIAGLAFNGMGKAG 396

Query: 404 IRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIE 463
           +  F+ M     +P+ ++   +L AC+HS L+ EG  YF+ M     I P  EH+ C+I+
Sbjct: 397 LEYFYQMRCDGFQPNPVSYIAVLTACSHSCLLNEGRLYFDEMRILYNIHPQIEHYGCMID 456

Query: 464 LLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSAT 523
           LL ++G  D+ M+ ++ MP + +S +W ++   CR+H  ID+ +   + L+   P   A 
Sbjct: 457 LLGRSGLLDEAMDLVKTMPMQPNSVIWASILSACRVHKRIDLAQCAAEHLLKIEPDEDAV 516

Query: 524 HGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVL 583
           +  L +I     K     K+R L+ ERQ KK    S + +  +VH F VSD  HP    +
Sbjct: 517 YVQLYNICIDSRKWEDASKIRMLMEERQVKKTAGYSSVTVAGQVHKFVVSDKSHPRILEI 576

Query: 584 YSVLEQLAGQM 594
            ++LE+++ ++
Sbjct: 577 IAMLEEISHRL 587



 Score =  168 bits (425), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 119/457 (26%), Positives = 219/457 (47%), Gaps = 39/457 (8%)

Query: 114  IPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFY 173
            IP  N+F  N+++  Y+ +G         +++   DV+SWN+++  YA  G ++E + + 
Sbjct: 865  IP-SNIFLSNSLVDLYSAIGDSVDTVKALNDILSEDVISWNSILSMYADRGHMKEAVYYL 923

Query: 174  KVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGF-LSNVVISSSIVDAYAK 232
            K +       +  SF  +L +  K  + +L  Q+HG V   GF  S+V + ++++D Y K
Sbjct: 924  KQMLWHGKMPSVRSFVSLLALSGKTGDWQLGVQIHGIVHKLGFSCSSVHVQTTLIDMYGK 983

Query: 233  CGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGY 292
            C         FD + A                        +FNE+P        +LI   
Sbjct: 984  CC-------CFDHSLA------------------------IFNEIPSIALECCNSLITSS 1012

Query: 293  TRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACA--SIVSLKHGKQVHGFLIRTNFRS 350
                +   ALE+   M++  + P+  TFS+ + A +  +  SL   + +H  L++  F  
Sbjct: 1013 LGCNMFDAALEILHCMIVEGVTPDDVTFSATMKAISLSASPSLTSCQMLHSCLVKLGFEM 1072

Query: 351  NTIVMSSLIDMYSKCGCLNDGRQVFD-LTDNKENSMLWNTMISALTQHGYDEQAIRLFHD 409
            +  V SSLI  Y+  G L+    +F+ L D   N + +  +ISA  ++G   +A+ LF  
Sbjct: 1073 DMAVCSSLITAYACAGQLSSSHLIFEGLLD--PNVICFTAIISACARYGDGARAMELFDQ 1130

Query: 410  MVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAG 469
            MV S +KPD +T    +  C  +G+ +EG    E M     + P++ H AC++ LL++ G
Sbjct: 1131 MVSSGLKPDNVTFLCAIAGCDQAGMFEEGRLVIELMRASRELDPDERHFACMVNLLSRDG 1190

Query: 470  CSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSS 529
               + M  +E+ P  H +  W++L   C+ HG   +G++  + LID   +  AT   +S+
Sbjct: 1191 FVKEAMEMMEQSPLRHYTKAWSSLLQSCKAHGENVLGKRAANMLIDVGRKDPATTLQVSN 1250

Query: 530  IYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENK 566
             ++ +G      +++++ N ++ KK    S IE+ ++
Sbjct: 1251 FFNDIGDRETALRIKEMTNVKEVKK-SGHSLIEVSHR 1286



 Score =  152 bits (384), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 108/401 (26%), Positives = 187/401 (46%), Gaps = 37/401 (9%)

Query: 35  EAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHL 94
           EA+     +   GI     T+  +L  C++ K L+LG  +HL +K  +  + +  L   L
Sbjct: 161 EAVDCFKNMLSEGIAPDDVTVIGVLSACSQLKDLELGCSLHLLVK-EKGMSMSENLVVAL 219

Query: 95  ISMYFKCGSDVDARKVFDKIPV-KNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSW 153
           I MY KCG    AR+VFD +   +   S+N ++ GY   G +  AR+LFD M  RD++++
Sbjct: 220 IDMYAKCGDFGHAREVFDAVGRGRRPQSWNAIIDGYCKHGHVDVARSLFDQMEVRDIITF 279

Query: 154 NTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLV 213
           N+MI GY  SG + E L  +  +RR  +  + F+   +L+ C  L  L   R +H  + +
Sbjct: 280 NSMITGYIHSGQLREALLLFMNMRRHDLRVDNFTVVSLLSACASLGALPQGRALHACIEL 339

Query: 214 TGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKL 273
               +++ I ++++D Y KCG +++A  +F     RDV  WT M++G A           
Sbjct: 340 RLVETDIYIGTALLDMYMKCGRVNEATIVFQRMGKRDVHAWTAMIAGLA----------- 388

Query: 274 FNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSL 333
                                NG+G+  LE F +M     +PN  ++ + L AC+    L
Sbjct: 389 --------------------FNGMGKAGLEYFYQMRCDGFQPNPVSYIAVLTACSHSCLL 428

Query: 334 KHGKQVHGFL-IRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMIS 392
             G+     + I  N          +ID+  + G L++   +      + NS++W +++S
Sbjct: 429 NEGRLYFDEMRILYNIHPQIEHYGCMIDLLGRSGLLDEAMDLVKTMPMQPNSVIWASILS 488

Query: 393 ALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVIL-NACTHS 432
           A   H   + A      +++  ++PD+  + V L N C  S
Sbjct: 489 ACRVHKRIDLAQCAAEHLLK--IEPDEDAVYVQLYNICIDS 527



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 104/440 (23%), Positives = 181/440 (41%), Gaps = 83/440 (18%)

Query: 27   LISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTP 86
             I  G    A +    +   GIR    T + IL  C+  ++L+L  RV   L L     P
Sbjct: 710  FIRDGLADRARAVYRWMVASGIRETPHTFSTILGVCSTYEALQLHGRV---LALGLCCNP 766

Query: 87   TTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMA 146
              F+ + L++ Y    S   A  +F ++P++N    N +L G  NL + +     F +M 
Sbjct: 767  --FVGSALVNHYMHVESPHAALSLFRELPLQNTAMCNVVLRGLGNLKLTEELICCFLDM- 823

Query: 147  ERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQ 206
             R  +  N +   YA  G  + G                             E L+  RQ
Sbjct: 824  RRQYLELNGLSYCYAMKGCYQNG-----------------------------EWLEQGRQ 854

Query: 207  VHGQVLVTGFL-SNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLG 265
            +HG VL  G++ SN+ +S+S+VD Y+  G+  D  +  ++  + DV++W +++S YA  G
Sbjct: 855  LHGVVLKAGWIPSNIFLSNSLVDLYSAIGDSVDTVKALNDILSEDVISWNSILSMYADRG 914

Query: 266  DMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLC 325
             M+ A     +M                          L+   M     P+  +F S L 
Sbjct: 915  HMKEAVYYLKQM--------------------------LWHGKM-----PSVRSFVSLLA 943

Query: 326  ACASIVSLKHGKQVHGFLIRTNFRSNTI-VMSSLIDMYSKCGCLNDGRQVFDLTDNKENS 384
                    + G Q+HG + +  F  +++ V ++LIDMY KC C +    +F+   +    
Sbjct: 944  LSGKTGDWQLGVQIHGIVHKLGFSCSSVHVQTTLIDMYGKCCCFDHSLAIFNEIPSIALE 1003

Query: 385  MLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFES 444
               + + S+L  + +D  A+ + H M+   V PD +T +  + A               S
Sbjct: 1004 CCNSLITSSLGCNMFD-AALEILHCMIVEGVTPDDVTFSATMKAI--------------S 1048

Query: 445  MTHDLGIIPNQEHHACLIEL 464
            ++    +   Q  H+CL++L
Sbjct: 1049 LSASPSLTSCQMLHSCLVKL 1068



 Score = 82.4 bits (202), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 81/346 (23%), Positives = 138/346 (39%), Gaps = 48/346 (13%)

Query: 144 NMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKL 203
            MA RDV S N MI G+ + G  +     Y+ +    I     +F+ IL +C   E L  
Sbjct: 694 TMAVRDVASLNRMITGFIRDGLADRARAVYRWMVASGIRETPHTFSTILGVCSTYEAL-- 751

Query: 204 TRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAK 263
             Q+HG+VL  G   N  + S++V+ Y        A  LF E   ++      ++ G   
Sbjct: 752 --QLHGRVLALGLCCNPFVGSALVNHYMHVESPHAALSLFRELPLQNTAMCNVVLRGLGN 809

Query: 264 LGDMESASKLFNEMP----EKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHT 319
           L   E     F +M     E N +S+   + G  +NG                       
Sbjct: 810 LKLTEELICCFLDMRRQYLELNGLSYCYAMKGCYQNGEW--------------------- 848

Query: 320 FSSCLCACASIVSLKHGKQVHGFLIRTNF-RSNTIVMSSLIDMYSKCGCLNDGRQVFDLT 378
                        L+ G+Q+HG +++  +  SN  + +SL+D+YS  G  +    V  L 
Sbjct: 849 -------------LEQGRQLHGVVLKAGWIPSNIFLSNSLVDLYSAIG--DSVDTVKALN 893

Query: 379 DN-KENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQE 437
           D   E+ + WN+++S     G+ ++A+     M+     P   +   +L     +G  Q 
Sbjct: 894 DILSEDVISWNSILSMYADRGHMKEAVYYLKQMLWHGKMPSVRSFVSLLALSGKTGDWQL 953

Query: 438 GLTYFESMTHDLGIIPNQEH-HACLIELLAQAGCSDQLMNQLEKMP 482
           G+     + H LG   +  H    LI++  +  C D  +    ++P
Sbjct: 954 GVQ-IHGIVHKLGFSCSSVHVQTTLIDMYGKCCCFDHSLAIFNEIP 998



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 78/404 (19%), Positives = 168/404 (41%), Gaps = 62/404 (15%)

Query: 23   SFLSLIS-KGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLT 81
            S LS+ + +G + EA+  L  +   G      +   +L    ++   +LG ++H  +   
Sbjct: 905  SILSMYADRGHMKEAVYYLKQMLWHGKMPSVRSFVSLLALSGKTGDWQLGVQIHGIVHKL 964

Query: 82   QRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNL 141
                 +  +   LI MY KC     +  +F++IP   L   N++++  ++LG      N+
Sbjct: 965  GFSCSSVHVQTTLIDMYGKCCCFDHSLAIFNEIPSIALECCNSLIT--SSLGC-----NM 1017

Query: 142  FDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEEL 201
            FD   E      + MI+     G   + + F   ++  S+S +       LT C      
Sbjct: 1018 FDAALE----ILHCMIV----EGVTPDDVTFSATMKAISLSASPS-----LTSC------ 1058

Query: 202  KLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGY 261
               + +H  ++  GF  ++ + SS++ AYA  G+LS +  +F+     +V+ +T ++S  
Sbjct: 1059 ---QMLHSCLVKLGFEMDMAVCSSLITAYACAGQLSSSHLIFEGLLDPNVICFTAIISAC 1115

Query: 262  AKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFS 321
            A+ GD                               G +A+ELF +M+   ++P+  TF 
Sbjct: 1116 ARYGD-------------------------------GARAMELFDQMVSSGLKPDNVTFL 1144

Query: 322  SCLCACASIVSLKHGKQVHGFLIRT-NFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDN 380
              +  C      + G+ V   +  +     +    + ++++ S+ G + +  ++ + +  
Sbjct: 1145 CAIAGCDQAGMFEEGRLVIELMRASRELDPDERHFACMVNLLSRDGFVKEAMEMMEQSPL 1204

Query: 381  KENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAV 424
            +  +  W++++ +   HG +    R  + ++    K    TL V
Sbjct: 1205 RHYTKAWSSLLQSCKAHGENVLGKRAANMLIDVGRKDPATTLQV 1248



 Score = 55.5 bits (132), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 51/218 (23%), Positives = 95/218 (43%), Gaps = 7/218 (3%)

Query: 277 MPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHG 336
           M  ++  S   +I G+ R+GL  +A  ++  M+   IR   HTFS+ L  C++  +L   
Sbjct: 695 MAVRDVASLNRMITGFIRDGLADRARAVYRWMVASGIRETPHTFSTILGVCSTYEAL--- 751

Query: 337 KQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQ 396
            Q+HG ++      N  V S+L++ Y      +    +F      +N+ + N ++  L  
Sbjct: 752 -QLHGRVLALGLCCNPFVGSALVNHYMHVESPHAALSLFRELP-LQNTAMCNVVLRGLGN 809

Query: 397 HGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQE 456
               E+ I  F DM R  ++ + ++    +  C  +G   E       +    G IP+  
Sbjct: 810 LKLTEELICCFLDMRRQYLELNGLSYCYAMKGCYQNGEWLEQGRQLHGVVLKAGWIPSNI 869

Query: 457 HHA-CLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNAL 493
             +  L++L +  G S   +  L  +  E D   WN++
Sbjct: 870 FLSNSLVDLYSAIGDSVDTVKALNDILSE-DVISWNSI 906



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/154 (25%), Positives = 75/154 (48%), Gaps = 5/154 (3%)

Query: 28  ISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPT 87
           I  GQL EA+     + +  +R+   T+  +L  CA   +L  G+ +H  ++L   +T  
Sbjct: 287 IHSGQLREALLLFMNMRRHDLRVDNFTVVSLLSACASLGALPQGRALHACIELRLVET-D 345

Query: 88  TFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMA- 146
            ++   L+ MY KCG   +A  VF ++  +++ ++  M++G A  GM K     F  M  
Sbjct: 346 IYIGTALLDMYMKCGRVNEATIVFQRMGKRDVHAWTAMIAGLAFNGMGKAGLEYFYQMRC 405

Query: 147 ---ERDVVSWNTMIIGYAKSGAVEEGLKFYKVLR 177
              + + VS+  ++   + S  + EG  ++  +R
Sbjct: 406 DGFQPNPVSYIAVLTACSHSCLLNEGRLYFDEMR 439


>gi|302780459|ref|XP_002972004.1| hypothetical protein SELMODRAFT_50691 [Selaginella moellendorffii]
 gi|300160303|gb|EFJ26921.1| hypothetical protein SELMODRAFT_50691 [Selaginella moellendorffii]
          Length = 513

 Score =  300 bits (768), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 164/515 (31%), Positives = 287/515 (55%), Gaps = 10/515 (1%)

Query: 53  ETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFD 112
           + LA +L+ C +   L+ G+R+H  +  +     + +L+N LI MY KC S  DAR VF 
Sbjct: 1   DQLAALLRSCGDHHDLEAGRRIHAQILGSAHHRGSRYLANTLIHMYGKCASLADARSVFQ 60

Query: 113 KIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVV----SWNTMIIGYAKSGAVEE 168
            +P  NLFS+  + S +A  G++  A+  FD M ER+VV    SW  M+  Y + G   E
Sbjct: 61  SMPDPNLFSWTIITSIHARHGLLDDAKRFFDAMPERNVVANVVSWTVMVSIYIQHGKNRE 120

Query: 169 GLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVD 228
            L     +    +  N  +F+ +LT C  L  L++ + VH +   +G +S+ V  +++++
Sbjct: 121 ALGLLMKMDLEGLQPNACTFSSVLTACANLGSLEMGKAVHRRAAASGLVSDTV-QNALIN 179

Query: 229 AYAKCGELSDARRLFDETDARDVLTWTTMVSGY--AKLGDMESASKLFNEMPEKNPVSWT 286
            YAKC  L +A+RLFD+   +  ++W  +++ Y  AKLGD+E A K F EM  K+  SW 
Sbjct: 180 MYAKCQRLGEAKRLFDQIPVKSDVSWNAIIAAYMYAKLGDVELARKAFEEMAVKDEASWN 239

Query: 287 TLIAGYTRNGLG-QKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIR 345
            +I  Y + G    +AL ++ RM    ++ N  TF++ L AC    SL+ G++++  L +
Sbjct: 240 GIIIAYAQYGDDVTEALVIYERMKSAGVQGNAITFTNVLTACLVSGSLEAGRRIYQDLCK 299

Query: 346 TNF-RSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAI 404
               +++ IV + L++M+++ G L   R VF+  + + N + WN M+ A +Q+GY  +A+
Sbjct: 300 HELEKTDAIVGTVLVNMFARFGDLVTARHVFE-NNQQRNVISWNGMVMAYSQNGYYNEAV 358

Query: 405 RLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIEL 464
            +FH +    ++ D I+   I +A +H+G +  G  YF SM  D G+ P  + +  L++L
Sbjct: 359 DVFHRLFLEGIQGDNISFTCIFHALSHAGSLDRGRDYFLSMGPDHGLTPTLDLYVSLVDL 418

Query: 465 LAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATH 524
           L ++G  +  +  +  MP E D   W  L G C++ GN+++G+   +++ + +P+  + +
Sbjct: 419 LGRSGRLNDAIALILDMPAEPDVMSWMTLLGGCKLQGNVELGKYAAERIFELDPEDPSPY 478

Query: 525 GLLSSIYSALGKGRLVEKVRQLINERQFKKEQAIS 559
            LLS+IY A G  R  E +R++I  R  ++E A +
Sbjct: 479 VLLSNIYFAAGVERDAESLREVIASRFPEEEYAAT 513



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 102/377 (27%), Positives = 184/377 (48%), Gaps = 40/377 (10%)

Query: 28  ISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPT 87
           I  G+  EA+  L  +   G++  A T + +L  CA   SL++GK VH     +   + T
Sbjct: 113 IQHGKNREALGLLMKMDLEGLQPNACTFSSVLTACANLGSLEMGKAVHRRAAASGLVSDT 172

Query: 88  TFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSG--YANLGMMKHARNLFDNM 145
             + N LI+MY KC    +A+++FD+IPVK+  S+N +++   YA LG ++ AR  F+ M
Sbjct: 173 --VQNALINMYAKCQRLGEAKRLFDQIPVKSDVSWNAIIAAYMYAKLGDVELARKAFEEM 230

Query: 146 AERDVVSWNTMIIGYAKSG-AVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLT 204
           A +D  SWN +II YA+ G  V E L  Y+ ++   +  N  +F  +LT C+    L+  
Sbjct: 231 AVKDEASWNGIIIAYAQYGDDVTEALVIYERMKSAGVQGNAITFTNVLTACLVSGSLEAG 290

Query: 205 RQVHGQVLVTGFL--SNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYA 262
           R+++ Q L    L  ++ ++ + +V+ +A+ G+L  AR +F+    R+V++W  MV    
Sbjct: 291 RRIY-QDLCKHELEKTDAIVGTVLVNMFARFGDLVTARHVFENNQQRNVISWNGMV---- 345

Query: 263 KLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSS 322
                                        Y++NG   +A+++F R+ +  I+ +  +F+ 
Sbjct: 346 ---------------------------MAYSQNGYYNEAVDVFHRLFLEGIQGDNISFTC 378

Query: 323 CLCACASIVSLKHGKQVHGFLIRTNFRSNTI-VMSSLIDMYSKCGCLNDGRQVFDLTDNK 381
              A +   SL  G+     +   +  + T+ +  SL+D+  + G LND   +      +
Sbjct: 379 IFHALSHAGSLDRGRDYFLSMGPDHGLTPTLDLYVSLVDLLGRSGRLNDAIALILDMPAE 438

Query: 382 ENSMLWNTMISALTQHG 398
            + M W T++      G
Sbjct: 439 PDVMSWMTLLGGCKLQG 455


>gi|357521295|ref|XP_003630936.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355524958|gb|AET05412.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 959

 Score =  300 bits (767), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 176/559 (31%), Positives = 283/559 (50%), Gaps = 68/559 (12%)

Query: 28  ISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTP- 86
           +  G   EA++    +   G++L + T A  L    +S SLK  K VH ++   +   P 
Sbjct: 355 VQNGFTDEAVALFKAMVTSGVKLDSITFASFLPSVLKSGSLKYCKEVHSYI--VRHGVPF 412

Query: 87  TTFLSNHLISMYFKCGSDVD-ARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNM 145
             +L + L+ +YFK G DV+ A K F +         N ++                   
Sbjct: 413 DVYLKSALVDIYFK-GGDVEMACKTFQQ---------NTLV------------------- 443

Query: 146 AERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTR 205
              DV     MI GY  +G   E L  ++ L +  +  N  + A +L  C  L  LKL +
Sbjct: 444 ---DVAVCTAMISGYVLNGLNVEALNLFRWLIQEGMVPNCLTMASVLPACAALASLKLGK 500

Query: 206 QVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLG 265
           ++H  +L  G  +   + SSI   YAK G L                             
Sbjct: 501 ELHCDILKKGLENVCQVGSSITYMYAKSGRL----------------------------- 531

Query: 266 DMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLC 325
             + A + F  MP K+ V W  +I  +++NG  + A++LF +M     + +  + S+ L 
Sbjct: 532 --DLAYQFFRRMPVKDSVCWNLMIVSFSQNGKPELAIDLFRQMGTSGTKFDSVSLSATLS 589

Query: 326 ACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSM 385
           ACA+  +L +GK++H F++R +F S+T V S+LIDMYSKCG L   R VFD+ D K N +
Sbjct: 590 ACANYPALYYGKELHCFVVRNSFISDTFVASTLIDMYSKCGKLALARSVFDMMDWK-NEV 648

Query: 386 LWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESM 445
            WN++I+A   HG   + + LFH+MV + ++PD +T  VI++AC H+GLV EG+ YF  M
Sbjct: 649 SWNSIIAAYGNHGRPRECLDLFHEMVEAGIQPDHVTFLVIMSACGHAGLVDEGIYYFRCM 708

Query: 446 THDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDM 505
           T + GI    EH AC+++L  +AG   +  + ++ MP+  D+  W +L G CR+HGN+++
Sbjct: 709 TEEYGICARMEHFACMVDLYGRAGRLHEAFDTIKSMPFTPDAGTWGSLLGACRLHGNVEL 768

Query: 506 GRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIEN 565
            +     L++ +P +S  + LLS++++  G+   V KVR L+ E+  +K    SWI++  
Sbjct: 769 AKLASKHLVELDPNNSGYYVLLSNVHAGAGEWESVLKVRSLMKEKGVQKIPGYSWIDVNG 828

Query: 566 KVHAFSVSDSLHPMRDVLY 584
             H FS +D  HP    +Y
Sbjct: 829 GTHMFSAADGCHPQSVEIY 847



 Score =  160 bits (406), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 96/309 (31%), Positives = 152/309 (49%), Gaps = 32/309 (10%)

Query: 125 MLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCN 184
           ML  Y      K   NLF  +     + WN +I G++  G  +  L F+  +   +++ +
Sbjct: 117 MLGMYVLCRSFKDVGNLFCRLQLCYSLPWNWLIRGFSMLGCFDFALMFFFRMLGSNVAPD 176

Query: 185 EFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFD 244
           +++F  ++  C  L  + L + VH      GF  ++ I SS++  Y   G + DA+ LFD
Sbjct: 177 KYTFPYVIKACGGLNNVPLCKMVHELARSMGFHMDLFIGSSLIKLYTDNGYIHDAKYLFD 236

Query: 245 ETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALEL 304
           E   RD + W  M++GY K GD  SA   F EM                RN         
Sbjct: 237 ELPVRDCILWNVMLNGYVKNGDFNSALGTFQEM----------------RNSC------- 273

Query: 305 FTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSK 364
                   ++PN  +F   L  CA+   ++ G Q+HG +IR+ F S+  V +++I MYSK
Sbjct: 274 --------VKPNSVSFVCLLSVCATRGIVRAGIQLHGLVIRSGFESDPTVANTIITMYSK 325

Query: 365 CGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAV 424
           CG L D R++FD+   + +++ WN +I+   Q+G+ ++A+ LF  MV S VK D IT A 
Sbjct: 326 CGNLFDARKIFDIMP-QTDTVTWNGLIAGYVQNGFTDEAVALFKAMVTSGVKLDSITFAS 384

Query: 425 ILNACTHSG 433
            L +   SG
Sbjct: 385 FLPSVLKSG 393



 Score =  149 bits (375), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 130/516 (25%), Positives = 226/516 (43%), Gaps = 70/516 (13%)

Query: 28  ISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVH-LHLKLTQRKTP 86
           +  G  + A+ +   +    ++  + +   +L  CA    ++ G ++H L ++      P
Sbjct: 254 VKNGDFNSALGTFQEMRNSCVKPNSVSFVCLLSVCATRGIVRAGIQLHGLVIRSGFESDP 313

Query: 87  TTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMA 146
           T  ++N +I+MY KCG+  DARK+FD +P  +  ++N +++GY   G    A  LF  M 
Sbjct: 314 T--VANTIITMYSKCGNLFDARKIFDIMPQTDTVTWNGLIAGYVQNGFTDEAVALFKAM- 370

Query: 147 ERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQ 206
                              V  G+K            +  +FA  L   +K   LK  ++
Sbjct: 371 -------------------VTSGVKL-----------DSITFASFLPSVLKSGSLKYCKE 400

Query: 207 VHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGD 266
           VH  ++  G   +V + S++VD Y K G++  A + F +    DV   T M+S       
Sbjct: 401 VHSYIVRHGVPFDVYLKSALVDIYFKGGDVEMACKTFQQNTLVDVAVCTAMIS------- 453

Query: 267 MESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCA 326
                                   GY  NGL  +AL LF  ++   + PN  T +S L A
Sbjct: 454 ------------------------GYVLNGLNVEALNLFRWLIQEGMVPNCLTMASVLPA 489

Query: 327 CASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSML 386
           CA++ SLK GK++H  +++    +   V SS+  MY+K G L+   Q F     K+ S+ 
Sbjct: 490 CAALASLKLGKELHCDILKKGLENVCQVGSSITYMYAKSGRLDLAYQFFRRMPVKD-SVC 548

Query: 387 WNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMT 446
           WN MI + +Q+G  E AI LF  M  S  K D ++L+  L+AC +   +  G      + 
Sbjct: 549 WNLMIVSFSQNGKPELAIDLFRQMGTSGTKFDSVSLSATLSACANYPALYYGKELHCFVV 608

Query: 447 HDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMG 506
            +   I +    + LI++ ++ G      +  + M ++++   WN++      HG     
Sbjct: 609 RN-SFISDTFVASTLIDMYSKCGKLALARSVFDMMDWKNEVS-WNSIIAAYGNHGRPREC 666

Query: 507 RKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEK 542
             +  ++++   Q    H     I SA G   LV++
Sbjct: 667 LDLFHEMVEAGIQPD--HVTFLVIMSACGHAGLVDE 700



 Score =  145 bits (367), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 97/381 (25%), Positives = 183/381 (48%), Gaps = 44/381 (11%)

Query: 118 NLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLR 177
           +LF  ++++  Y + G +  A+ LFD +  RD + WN M+ GY K+G     L  ++ +R
Sbjct: 211 DLFIGSSLIKLYTDNGYIHDAKYLFDELPVRDCILWNVMLNGYVKNGDFNSALGTFQEMR 270

Query: 178 RFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELS 237
              +  N  SF  +L++C     ++   Q+HG V+ +GF S+  ++++I+  Y+KCG L 
Sbjct: 271 NSCVKPNSVSFVCLLSVCATRGIVRAGIQLHGLVIRSGFESDPTVANTIITMYSKCGNLF 330

Query: 238 DARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGL 297
           DAR++FD     D +TW  +++GY +                               NG 
Sbjct: 331 DARKIFDIMPQTDTVTWNGLIAGYVQ-------------------------------NGF 359

Query: 298 GQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSS 357
             +A+ LF  M+   ++ +  TF+S L +     SLK+ K+VH +++R     +  + S+
Sbjct: 360 TDEAVALFKAMVTSGVKLDSITFASFLPSVLKSGSLKYCKEVHSYIVRHGVPFDVYLKSA 419

Query: 358 LIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKP 417
           L+D+Y K G +    + F   +   +  +   MIS    +G + +A+ LF  +++  + P
Sbjct: 420 LVDIYFKGGDVEMACKTFQ-QNTLVDVAVCTAMISGYVLNGLNVEALNLFRWLIQEGMVP 478

Query: 418 DKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHAC-----LIELLAQAGCSD 472
           + +T+A +L AC     ++ G    + +  D  I+     + C     +  + A++G  D
Sbjct: 479 NCLTMASVLPACAALASLKLG----KELHCD--ILKKGLENVCQVGSSITYMYAKSGRLD 532

Query: 473 QLMNQLEKMPYEHDSYLWNAL 493
                  +MP + DS  WN +
Sbjct: 533 LAYQFFRRMPVK-DSVCWNLM 552



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 64/266 (24%), Positives = 112/266 (42%), Gaps = 46/266 (17%)

Query: 25  LSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRK 84
           +S    G+   AI     +   G +  + +L+  L  CA   +L  GK +H  + +    
Sbjct: 554 VSFSQNGKPELAIDLFRQMGTSGTKFDSVSLSATLSACANYPALYYGKELHCFV-VRNSF 612

Query: 85  TPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDN 144
              TF+++ LI MY KCG    AR VFD +  KN  S+N++++ Y N G  +   +LF  
Sbjct: 613 ISDTFVASTLIDMYSKCGKLALARSVFDMMDWKNEVSWNSIIAAYGNHGRPRECLDLFHE 672

Query: 145 MAER----DVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEE 200
           M E     D V++  ++     +G V+EG+ +++ +        E+       IC ++E 
Sbjct: 673 MVEAGIQPDHVTFLVIMSACGHAGLVDEGIYYFRCMTE------EYG------ICARMEH 720

Query: 201 LKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDAR----DVLTWTT 256
                                  + +VD Y + G L +A   FD   +     D  TW +
Sbjct: 721 F----------------------ACMVDLYGRAGRLHEA---FDTIKSMPFTPDAGTWGS 755

Query: 257 MVSGYAKLGDMESASKLFNEMPEKNP 282
           ++      G++E A      + E +P
Sbjct: 756 LLGACRLHGNVELAKLASKHLVELDP 781


>gi|345505204|gb|AEN99826.1| chlororespiratory reduction 4, partial [Aethionema cordifolium]
          Length = 587

 Score =  300 bits (767), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 172/534 (32%), Positives = 290/534 (54%), Gaps = 43/534 (8%)

Query: 42  LLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKC 101
           L+ + G+ +   +L+ +L+ C+    ++ G ++H  L+ T   +   FL N LI +Y KC
Sbjct: 89  LMLENGVSVDKFSLSLVLKACSRLGFVQEGMQIHGFLRKTGIWS-DLFLQNCLIGLYLKC 147

Query: 102 GSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAE--RDVVSWNTMIIG 159
           G    AR++FD++P ++  SYN+M+ GY   G++  AR LFD M +  ++++SWN+MI G
Sbjct: 148 GCLGFARQIFDRMPQRDSVSYNSMIDGYVKCGLIGSARELFDLMPKEMKNLISWNSMISG 207

Query: 160 YAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSN 219
           YA++    +G+         +I+   F+         ++ E                  +
Sbjct: 208 YAQT---SDGV---------NIASKLFA---------EMPE-----------------KD 229

Query: 220 VVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPE 279
           ++  +S++D Y K G + DA+ LF     RDV+TW TM+ GYAKLG +  A  LF++MP 
Sbjct: 230 LISWNSLIDGYVKHGRMEDAKDLFYVMPRRDVVTWATMIDGYAKLGFVHKAKTLFDQMPH 289

Query: 280 KNPVSWTTLIAGYTRNGLGQKALELFTRM-MILRIRPNQHTFSSCLCACASIVSLKHGKQ 338
           ++ V++ +++AGY +N    +ALE+F  M     + P++ T    L A A +  L     
Sbjct: 290 RDVVAYNSMMAGYVQNKYHMEALEIFNNMEKDSHLSPDETTLVIVLSAIAQLGRLSKAMS 349

Query: 339 VHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHG 398
           ++ +++  +F     +  +LIDM+SKCG +     VF+   NK     WN MI  L  HG
Sbjct: 350 MNKYIVEKSFPLGGKLGVALIDMHSKCGSIQQAISVFEGIKNKSIDH-WNAMIGGLAIHG 408

Query: 399 YDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHH 458
           + E A  +   + R S+KPD IT   +LNAC+HSGLV+EGL  FE M     I P  +H+
Sbjct: 409 HGELAFDMLMQIERCSIKPDDITFIGVLNACSHSGLVKEGLLSFELMRRKHKIEPRLQHY 468

Query: 459 ACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNP 518
            C++++L+++G  +   + +E MP E +  +W      CR     ++G  V   LI Q  
Sbjct: 469 GCIVDILSRSGSIELAKHLIEDMPMEPNDVIWRTFLIACRNRKEFEIGELVAKHLILQAG 528

Query: 519 QSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSV 572
            + +++ LLS++Y++LG  + V +VR ++ +R+  K    SWIE++  VH F V
Sbjct: 529 YNPSSYVLLSNMYASLGMWKDVRRVRMMMKQRKLHKIPGCSWIELDGNVHEFFV 582



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 97/375 (25%), Positives = 196/375 (52%), Gaps = 27/375 (7%)

Query: 149 DVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVH 208
           D   WN +I  ++     +  L ++ ++    +S ++FS + +L  C +L  ++   Q+H
Sbjct: 63  DPFLWNAVIKSHSHGVDPKRALIWFCLMLENGVSVDKFSLSLVLKACSRLGFVQEGMQIH 122

Query: 209 GQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDME 268
           G +  TG  S++ + + ++  Y KCG L  AR++FD    RD +++ +M+ GY K G + 
Sbjct: 123 GFLRKTGIWSDLFLQNCLIGLYLKCGCLGFARQIFDRMPQRDSVSYNSMIDGYVKCGLIG 182

Query: 269 SASKLFNEMPE--KNPVSWTTLIAGYTRNGLGQK-ALELFTRMMILRIRPNQHTFSSCLC 325
           SA +LF+ MP+  KN +SW ++I+GY +   G   A +LF  M      P +      L 
Sbjct: 183 SARELFDLMPKEMKNLISWNSMISGYAQTSDGVNIASKLFAEM------PEKD-----LI 231

Query: 326 ACASIVS--LKHGKQVHGF-LIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKE 382
           +  S++   +KHG+      L     R + +  +++ID Y+K G ++  + +FD   +++
Sbjct: 232 SWNSLIDGYVKHGRMEDAKDLFYVMPRRDVVTWATMIDGYAKLGFVHKAKTLFDQMPHRD 291

Query: 383 NSMLWNTMISALTQHGYDEQAIRLFHDMVRSS-VKPDKITLAVILNACTHSGLVQEGLT- 440
             + +N+M++   Q+ Y  +A+ +F++M + S + PD+ TL ++L+A    G + + ++ 
Sbjct: 292 -VVAYNSMMAGYVQNKYHMEALEIFNNMEKDSHLSPDETTLVIVLSAIAQLGRLSKAMSM 350

Query: 441 --YFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCR 498
             Y    +  LG     +    LI++ ++ G   Q ++  E +  +   + WNA+ G   
Sbjct: 351 NKYIVEKSFPLG----GKLGVALIDMHSKCGSIQQAISVFEGIKNKSIDH-WNAMIGGLA 405

Query: 499 IHGNIDMGRKVVDQL 513
           IHG+ ++   ++ Q+
Sbjct: 406 IHGHGELAFDMLMQI 420



 Score = 83.2 bits (204), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 75/312 (24%), Positives = 125/312 (40%), Gaps = 88/312 (28%)

Query: 200 ELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVS 259
           +++   Q+H +++ TGF+ N  +++ IV A+A       +RR +    AR V        
Sbjct: 2   QIRRCEQIHARLIKTGFIQNSNLTTRIVLAFAA------SRRPYLAEFARCVFQ------ 49

Query: 260 GYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHT 319
                 +  S S    E+  ++P  W  +I  ++     ++AL  F  M+   +  ++ +
Sbjct: 50  ------NYHSCSFAHGEV--EDPFLWNAVIKSHSHGVDPKRALIWFCLMLENGVSVDKFS 101

Query: 320 FSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTD 379
            S  L AC+ +  ++ G Q+HGFL +T   S+  + + LI +Y KCGCL   RQ+FD   
Sbjct: 102 LSLVLKACSRLGFVQEGMQIHGFLRKTGIWSDLFLQNCLIGLYLKCGCLGFARQIFDRMP 161

Query: 380 NKE----NSML----------------------------WNTMISALTQ----------- 396
            ++    NSM+                            WN+MIS   Q           
Sbjct: 162 QRDSVSYNSMIDGYVKCGLIGSARELFDLMPKEMKNLISWNSMISGYAQTSDGVNIASKL 221

Query: 397 ---------------------HGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLV 435
                                HG  E A  LF+ M R     D +T A +++     G V
Sbjct: 222 FAEMPEKDLISWNSLIDGYVKHGRMEDAKDLFYVMPRR----DVVTWATMIDGYAKLGFV 277

Query: 436 QEGLTYFESMTH 447
            +  T F+ M H
Sbjct: 278 HKAKTLFDQMPH 289



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 46/172 (26%), Positives = 82/172 (47%), Gaps = 14/172 (8%)

Query: 333 LKHGKQVHGFLIRTNFRSNTIVMSSLIDMYS---KCGCLNDGRQVFD-------LTDNKE 382
           ++  +Q+H  LI+T F  N+ + + ++  ++   +       R VF             E
Sbjct: 3   IRRCEQIHARLIKTGFIQNSNLTTRIVLAFAASRRPYLAEFARCVFQNYHSCSFAHGEVE 62

Query: 383 NSMLWNTMISALTQHGYD-EQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTY 441
           +  LWN +I + + HG D ++A+  F  M+ + V  DK +L+++L AC+  G VQEG+  
Sbjct: 63  DPFLWNAVIKSHS-HGVDPKRALIWFCLMLENGVSVDKFSLSLVLKACSRLGFVQEGMQ- 120

Query: 442 FESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNAL 493
                   GI  +     CLI L  + GC        ++MP + DS  +N++
Sbjct: 121 IHGFLRKTGIWSDLFLQNCLIGLYLKCGCLGFARQIFDRMP-QRDSVSYNSM 171


>gi|147864534|emb|CAN78385.1| hypothetical protein VITISV_017238 [Vitis vinifera]
          Length = 643

 Score =  300 bits (767), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 174/537 (32%), Positives = 282/537 (52%), Gaps = 72/537 (13%)

Query: 54  TLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDK 113
           T  F+++ C ES     G  VH                 H++   F+C S          
Sbjct: 2   TYPFVIKACNESSVTWFGLLVH----------------THVVKSGFECDS---------- 35

Query: 114 IPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFY 173
                 +  N+++  YAN   +  A+ LF   ++RDVVSWN MI GY K G         
Sbjct: 36  ------YIVNSLIHLYANGKDLGAAKQLFSLCSDRDVVSWNAMIDGYVKRG--------- 80

Query: 174 KVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKC 233
                                     E+  TR V  +++      +V+  ++I++ YA  
Sbjct: 81  --------------------------EMGHTRMVFDRMVC----RDVISWNTIINGYAIV 110

Query: 234 GELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYT 293
           G++ +A+RLFDE   R++++W +M+SG+ K G++E A  LF+EMP ++ VSW +++A Y 
Sbjct: 111 GKIDEAKRLFDEMPERNLVSWNSMLSGFVKCGNVEEAFGLFSEMPCRDVVSWNSMLACYA 170

Query: 294 RNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTI 353
           + G   +AL LF +M  + ++P + T  S L ACA + +L  G  +H ++       N+I
Sbjct: 171 QCGKPNEALALFDQMRAVGVKPTEATVVSLLSACAHLGALDKGLHLHTYINDNRIEVNSI 230

Query: 354 VMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRS 413
           V ++L+DMY+KCG ++   QVF+  ++K+  + WNT+I+ +  HG+ ++A +LF +M  +
Sbjct: 231 VGTALVDMYAKCGKISLATQVFNAMESKD-VLAWNTIIAGMAIHGHVKEAQQLFKEMKEA 289

Query: 414 SVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQ 473
           SV+P+ IT   +L+AC+H+G+V EG    + M+   GI P  EH+ C+I+LLA+AG  ++
Sbjct: 290 SVEPNDITFVAMLSACSHAGMVDEGQKLLDCMSSSYGIEPKVEHYDCVIDLLARAGLLEE 349

Query: 474 LMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSA 533
            M  +  MP E +     AL G CRIHGN ++G  V  +LI+  P  S  + LLS+IY+A
Sbjct: 350 AMELIGTMPMEPNPSALGALLGGCRIHGNFELGEMVGKRLINLQPCHSGRYILLSNIYAA 409

Query: 534 LGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQL 590
             K     KVR L+      K   +S IE++  VH F   D  HP  + +Y  L ++
Sbjct: 410 AKKWDDARKVRNLMKVNGISKVPGVSVIELKGMVHRFVAGDWSHPESNKIYDKLNEI 466



 Score = 66.2 bits (160), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 40/146 (27%), Positives = 75/146 (51%), Gaps = 5/146 (3%)

Query: 31  GQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFL 90
           G+ +EA++  D +   G++    T+  +L  CA   +L  G  +H ++    R    + +
Sbjct: 173 GKPNEALALFDQMRAVGVKPTEATVVSLLSACAHLGALDKGLHLHTYIN-DNRIEVNSIV 231

Query: 91  SNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDV 150
              L+ MY KCG    A +VF+ +  K++ ++N +++G A  G +K A+ LF  M E  V
Sbjct: 232 GTALVDMYAKCGKISLATQVFNAMESKDVLAWNTIIAGMAIHGHVKEAQQLFKEMKEASV 291

Query: 151 ----VSWNTMIIGYAKSGAVEEGLKF 172
               +++  M+   + +G V+EG K 
Sbjct: 292 EPNDITFVAMLSACSHAGMVDEGQKL 317


>gi|297727555|ref|NP_001176141.1| Os10g0400250 [Oryza sativa Japonica Group]
 gi|13940614|gb|AAK50416.1|AC021891_17 Putative selenium-binding protein-like [Oryza sativa Japonica
           Group]
 gi|31431939|gb|AAP53645.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
 gi|125574711|gb|EAZ15995.1| hypothetical protein OsJ_31439 [Oryza sativa Japonica Group]
 gi|255679385|dbj|BAH94869.1| Os10g0400250 [Oryza sativa Japonica Group]
          Length = 651

 Score =  300 bits (767), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 157/468 (33%), Positives = 257/468 (54%), Gaps = 3/468 (0%)

Query: 133 GMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFY--KVLRRFSISCNEFSFAG 190
           G M+ AR LFD    RD+VSWNT+I GY + G   E L+ +   V     +  +E +   
Sbjct: 174 GPMEDARRLFDRSPVRDLVSWNTLIGGYVRRGNPAEALELFWRMVAEDAVVRPDEVTMIA 233

Query: 191 ILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARD 250
            ++ C ++ +L+L R++HG V   G    V + ++++D Y KCG L  A+ +F+  + R 
Sbjct: 234 AVSGCGQMRDLELGRRLHGFVDSDGVSCTVRLMNALMDMYIKCGSLEMAKSVFERIEHRT 293

Query: 251 VLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMI 310
           V++WTTM+ G+AK G M+ A K+F+EMPE++   W  L+ GY +    ++AL LF  M  
Sbjct: 294 VVSWTTMIVGFAKFGLMDDARKVFDEMPERDVFPWNALMTGYVQCKQCKEALSLFHEMQE 353

Query: 311 LRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLND 370
             + P++ T  + L AC+ + +L+ G  VH ++ +     +  + +SLIDMY+KCG +  
Sbjct: 354 ASVVPDEITMVNLLTACSQLGALEMGMWVHRYIEKHRLVFSVALGTSLIDMYAKCGNIEK 413

Query: 371 GRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACT 430
              +F     K N++ W  MI  L  HG+  +AI  F  M+    KPD+IT   +L+AC 
Sbjct: 414 AIHIFKEIPEK-NALTWTAMICGLANHGHANEAIEHFRTMIELGQKPDEITFIGVLSACC 472

Query: 431 HSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLW 490
           H+GLV+EG  +F  M     +    +H++C+I+LL +AG  D+    +  MP E D+ +W
Sbjct: 473 HAGLVKEGREFFSLMETKYHLERKMKHYSCMIDLLGRAGHLDEAEQLVNTMPMEPDAVVW 532

Query: 491 NALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINER 550
            A+   CR+ GNI +G K   +L++ +P  S  + LL+++Y+     +  +KVR ++   
Sbjct: 533 GAIFFACRMQGNISLGEKAAMKLVEIDPSDSGIYVLLANMYAEANMRKKADKVRAMMRHL 592

Query: 551 QFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQMGEDA 598
             +K    S IE+   VH F V D  H     +Y  L ++  Q+   A
Sbjct: 593 GVEKVPGCSCIELNGVVHEFIVKDKSHMDSHAIYDCLHEITLQIKHTA 640



 Score =  166 bits (419), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 104/384 (27%), Positives = 182/384 (47%), Gaps = 38/384 (9%)

Query: 18  NCLIQSFLSLISKGQLSEAISSL-DLLAQRGIRLPAE-TLAFILQQCAESKSLKLGKRVH 75
           N LI  +   + +G  +EA+     ++A+  +  P E T+   +  C + + L+LG+R+H
Sbjct: 195 NTLIGGY---VRRGNPAEALELFWRMVAEDAVVRPDEVTMIAAVSGCGQMRDLELGRRLH 251

Query: 76  LHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMM 135
             +  +   + T  L N L+ MY KCGS   A+ VF++I  + + S+  M+ G+A  G+M
Sbjct: 252 GFVD-SDGVSCTVRLMNALMDMYIKCGSLEMAKSVFERIEHRTVVSWTTMIVGFAKFGLM 310

Query: 136 KHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTIC 195
             AR +FD M ERDV  WN ++ GY +    +E L  +  ++  S+  +E +   +LT C
Sbjct: 311 DDARKVFDEMPERDVFPWNALMTGYVQCKQCKEALSLFHEMQEASVVPDEITMVNLLTAC 370

Query: 196 VKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWT 255
            +L  L++   VH  +     + +V + +S++D YAKCG +  A  +F E   ++ LTWT
Sbjct: 371 SQLGALEMGMWVHRYIEKHRLVFSVALGTSLIDMYAKCGNIEKAIHIFKEIPEKNALTWT 430

Query: 256 TMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRP 315
            M+ G A  G    A + F  M E                 LGQK              P
Sbjct: 431 AMICGLANHGHANEAIEHFRTMIE-----------------LGQK--------------P 459

Query: 316 NQHTFSSCLCACASIVSLKHGKQVHGFL-IRTNFRSNTIVMSSLIDMYSKCGCLNDGRQV 374
           ++ TF   L AC     +K G++    +  + +        S +ID+  + G L++  Q+
Sbjct: 460 DEITFIGVLSACCHAGLVKEGREFFSLMETKYHLERKMKHYSCMIDLLGRAGHLDEAEQL 519

Query: 375 FDLTDNKENSMLWNTMISALTQHG 398
            +    + ++++W  +  A    G
Sbjct: 520 VNTMPMEPDAVVWGAIFFACRMQG 543



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 100/404 (24%), Positives = 182/404 (45%), Gaps = 74/404 (18%)

Query: 164 GAVEEGLKFYK-VLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVI 222
           G V   L  Y+ +LR  +   +  +F  +L  C +L E          VL  G  S+V +
Sbjct: 103 GVVRRCLPLYRALLRSGTARPDHLTFPFLLKACARLREWGYGDAALAHVLRLGLDSDVFV 162

Query: 223 SSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNP 282
            ++     +  G + DARRLFD +  RD+++W T++ GY + G               NP
Sbjct: 163 VNAATHFLSIRGPMEDARRLFDRSPVRDLVSWNTLIGGYVRRG---------------NP 207

Query: 283 VSWTTLIAGYTRNGLGQKALELFTRMMI--LRIRPNQHTFSSCLCACASIVSLKHGKQVH 340
                            +ALELF RM+     +RP++ T  + +  C  +  L+ G+++H
Sbjct: 208 A----------------EALELFWRMVAEDAVVRPDEVTMIAAVSGCGQMRDLELGRRLH 251

Query: 341 GFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHG-- 398
           GF+          +M++L+DMY KCG L   + VF+  +++   + W TMI    + G  
Sbjct: 252 GFVDSDGVSCTVRLMNALMDMYIKCGSLEMAKSVFERIEHR-TVVSWTTMIVGFAKFGLM 310

Query: 399 ------YDE-----------------------QAIRLFHDMVRSSVKPDKITLAVILNAC 429
                 +DE                       +A+ LFH+M  +SV PD+IT+  +L AC
Sbjct: 311 DDARKVFDEMPERDVFPWNALMTGYVQCKQCKEALSLFHEMQEASVVPDEITMVNLLTAC 370

Query: 430 THSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYL 489
           +  G ++ G+ +         ++ +      LI++ A+ G  ++ ++  +++P E ++  
Sbjct: 371 SQLGALEMGM-WVHRYIEKHRLVFSVALGTSLIDMYAKCGNIEKAIHIFKEIP-EKNALT 428

Query: 490 WNALHGVCRI--HGNIDMGRKVVDQLID--QNPQSSATHGLLSS 529
           W A+  +C +  HG+ +   +    +I+  Q P      G+LS+
Sbjct: 429 WTAM--ICGLANHGHANEAIEHFRTMIELGQKPDEITFIGVLSA 470


>gi|168042957|ref|XP_001773953.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162674797|gb|EDQ61301.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 905

 Score =  300 bits (767), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 172/572 (30%), Positives = 281/572 (49%), Gaps = 65/572 (11%)

Query: 26  SLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKT 85
           +L   G   EA      +   G+ L   T   IL  C+ SK+L+ GK +H H+      +
Sbjct: 304 ALAQHGHNVEAFEQYYRMRSDGVALNRTTYLSILNACSTSKALEAGKLIHSHISEDGHSS 363

Query: 86  PTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNM 145
               + N LISMY +CG                                +  AR LF  M
Sbjct: 364 DVQ-IGNALISMYARCGD-------------------------------LPKARELFYTM 391

Query: 146 AERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTR 205
            +RD++SWN +I GYA+     E ++ YK ++   +     +F  +L+ C         +
Sbjct: 392 PKRDLISWNAIIAGYARREDRGEAMRLYKQMQSEGVKPGRVTFLHLLSACANSSAYADGK 451

Query: 206 QVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLG 265
            +H  +L +G  SN  +++++++ Y +CG L +A+ +F+ T ARDV              
Sbjct: 452 MIHEDILRSGIKSNGHLANALMNMYRRCGSLMEAQNVFEGTQARDV-------------- 497

Query: 266 DMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLC 325
                            +SW ++IAG+ ++G  + A +LF  M    + P+  TF+S L 
Sbjct: 498 -----------------ISWNSMIAGHAQHGSYETAYKLFQEMQNEELEPDNITFASVLS 540

Query: 326 ACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSM 385
            C +  +L+ GKQ+HG +  +  + +  + ++LI+MY +CG L D R VF    +++  M
Sbjct: 541 GCKNPEALELGKQIHGRITESGLQLDVNLGNALINMYIRCGSLQDARNVFHSLQHRD-VM 599

Query: 386 LWNTMISALTQHGYDEQAIRLFHDMVRSSVKP-DKITLAVILNACTHSGLVQEGLTYFES 444
            W  MI      G D +AI LF  M     +P D  T   IL+AC H+GLV EG   F S
Sbjct: 600 SWTAMIGGCADQGEDMKAIELFWQMQNEGFRPPDGSTFTSILSACNHAGLVLEGYQIFSS 659

Query: 445 MTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNID 504
           M  + G++P  EH+ CL+ LL +A    +    + +MP+  D+ +W  L G CRIHGNI 
Sbjct: 660 MESEYGVLPTIEHYGCLVGLLGRARRFQEAETLINQMPFPPDAAVWETLLGACRIHGNIA 719

Query: 505 MGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIE 564
           +     +  +  N ++ A + LLS++Y+A G+   V K+R+++  R  +KE   SWIE++
Sbjct: 720 LAEHAANNALKLNARNPAVYILLSNVYAAAGRWDDVAKIRRVMEGRGIRKEPGRSWIEVD 779

Query: 565 NKVHAFSVSDSLHPMRDVLYSVLEQLAGQMGE 596
           N +H F  +D  HP    +Y+ L++L+ +M E
Sbjct: 780 NIIHEFIAADRSHPETAEIYAELKRLSVEMEE 811



 Score =  164 bits (414), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 116/472 (24%), Positives = 206/472 (43%), Gaps = 66/472 (13%)

Query: 30  KGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTF 89
           K  + E +     ++  GI     T   +L        L  GKR+H  L + +       
Sbjct: 207 KAYVKECLGLFGQMSSEGISPDKVTYINLLDAFTTPSMLDEGKRIH-KLTVEEGLNSDIR 265

Query: 90  LSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERD 149
           +   L++M  +CG DVD+                              A+  F  +A+RD
Sbjct: 266 VGTALVTMCVRCG-DVDS------------------------------AKQAFKGIADRD 294

Query: 150 VVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHG 209
           VV +N +I   A+ G   E  + Y  +R   ++ N  ++  IL  C   + L+  + +H 
Sbjct: 295 VVVYNALIAALAQHGHNVEAFEQYYRMRSDGVALNRTTYLSILNACSTSKALEAGKLIHS 354

Query: 210 QVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMES 269
            +   G  S+V I ++++  YA+CG+L  AR LF     RD+++W  +++GYA+  D   
Sbjct: 355 HISEDGHSSDVQIGNALISMYARCGDLPKARELFYTMPKRDLISWNAIIAGYARREDRGE 414

Query: 270 ASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACAS 329
           A +L+ +M  +                                ++P + TF   L ACA+
Sbjct: 415 AMRLYKQMQSEG-------------------------------VKPGRVTFLHLLSACAN 443

Query: 330 IVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNT 389
             +   GK +H  ++R+  +SN  + ++L++MY +CG L + + VF+ T  ++  + WN+
Sbjct: 444 SSAYADGKMIHEDILRSGIKSNGHLANALMNMYRRCGSLMEAQNVFEGTQARD-VISWNS 502

Query: 390 MISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDL 449
           MI+   QHG  E A +LF +M    ++PD IT A +L+ C +   ++ G      +T + 
Sbjct: 503 MIAGHAQHGSYETAYKLFQEMQNEELEPDNITFASVLSGCKNPEALELGKQIHGRIT-ES 561

Query: 450 GIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHG 501
           G+  +      LI +  + G      N    + +  D   W A+ G C   G
Sbjct: 562 GLQLDVNLGNALINMYIRCGSLQDARNVFHSLQHR-DVMSWTAMIGGCADQG 612



 Score =  162 bits (409), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 135/543 (24%), Positives = 243/543 (44%), Gaps = 56/543 (10%)

Query: 54  TLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDK 113
           T   +LQ C   + L   KR+H  + +     P  FLSN LI+MY KC S +DA +VF +
Sbjct: 29  TYVALLQNCTRKRLLPEAKRIHAQM-VEAGVGPDIFLSNLLINMYVKCRSVLDAHQVFKE 87

Query: 114 IPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAER----DVVSWNTMIIGYAKSGAVEEG 169
           +P +++ S+N+++S YA  G  K A  LF+ M       + +++ +++        +E G
Sbjct: 88  MPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQNAGFIPNKITYISILTACYSPAELENG 147

Query: 170 LKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVH--------------------- 208
            K +  + +     +      +L++  K  +L   RQV                      
Sbjct: 148 KKIHSQIIKAGYQRDPRVQNSLLSMYGKCGDLPRARQVFAGISPRDVVSYNTMLGLYAQK 207

Query: 209 ----------GQVLVTGFLSNVVISSSIVDAYAKCGELSDARRL----FDETDARDVLTW 254
                     GQ+   G   + V   +++DA+     L + +R+     +E    D+   
Sbjct: 208 AYVKECLGLFGQMSSEGISPDKVTYINLLDAFTTPSMLDEGKRIHKLTVEEGLNSDIRVG 267

Query: 255 TTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIR 314
           T +V+   + GD++SA + F  + +++ V +  LIA   ++G   +A E + RM    + 
Sbjct: 268 TALVTMCVRCGDVDSAKQAFKGIADRDVVVYNALIAALAQHGHNVEAFEQYYRMRSDGVA 327

Query: 315 PNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQV 374
            N+ T+ S L AC++  +L+ GK +H  +      S+  + ++LI MY++CG L   R++
Sbjct: 328 LNRTTYLSILNACSTSKALEAGKLIHSHISEDGHSSDVQIGNALISMYARCGDLPKAREL 387

Query: 375 FDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGL 434
           F  T  K + + WN +I+   +     +A+RL+  M    VKP ++T   +L+AC +S  
Sbjct: 388 F-YTMPKRDLISWNAIIAGYARREDRGEAMRLYKQMQSEGVKPGRVTFLHLLSACANSSA 446

Query: 435 VQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALH 494
             +G    E +    GI  N      L+ +  + G   +  N  E      D   WN++ 
Sbjct: 447 YADGKMIHEDILRS-GIKSNGHLANALMNMYRRCGSLMEAQNVFEGTQ-ARDVISWNSMI 504

Query: 495 GVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSA--------LGK---GRLVEKV 543
                HG+ +   K+  ++  QN +    +   +S+ S         LGK   GR+ E  
Sbjct: 505 AGHAQHGSYETAYKLFQEM--QNEELEPDNITFASVLSGCKNPEALELGKQIHGRITESG 562

Query: 544 RQL 546
            QL
Sbjct: 563 LQL 565



 Score =  118 bits (295), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 96/389 (24%), Positives = 166/389 (42%), Gaps = 80/389 (20%)

Query: 18  NCLIQSFLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLH 77
           N +I  +     +G   EA+     +   G++    T   +L  CA S +   GK +H  
Sbjct: 400 NAIIAGYARREDRG---EAMRLYKQMQSEGVKPGRVTFLHLLSACANSSAYADGKMIHED 456

Query: 78  LKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKH 137
           +  +  K+    L+N L++MY +CGS ++A+ VF+    +++ S+N+M++G+A  G  + 
Sbjct: 457 ILRSGIKS-NGHLANALMNMYRRCGSLMEAQNVFEGTQARDVISWNSMIAGHAQHGSYET 515

Query: 138 ARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVK 197
           A  LF  M   ++   N                                +FA +L+ C  
Sbjct: 516 AYKLFQEMQNEELEPDN-------------------------------ITFASVLSGCKN 544

Query: 198 LEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTM 257
            E L+L +Q+HG++  +G   +V + +++++ Y +CG L DAR +F     RDV++WT M
Sbjct: 545 PEALELGKQIHGRITESGLQLDVNLGNALINMYIRCGSLQDARNVFHSLQHRDVMSWTAM 604

Query: 258 VSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIR-PN 316
           + G A  G+                                 KA+ELF +M     R P+
Sbjct: 605 IGGCADQGE-------------------------------DMKAIELFWQMQNEGFRPPD 633

Query: 317 QHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFD 376
             TF+S L AC        G  + G+ I ++  S   V+ ++       G L   R+ F 
Sbjct: 634 GSTFTSILSACNHA-----GLVLEGYQIFSSMESEYGVLPTIEHYGCLVGLLGRARR-FQ 687

Query: 377 LTDNKENSM-------LWNTMISALTQHG 398
             +   N M       +W T++ A   HG
Sbjct: 688 EAETLINQMPFPPDAAVWETLLGACRIHG 716


>gi|242037917|ref|XP_002466353.1| hypothetical protein SORBIDRAFT_01g006260 [Sorghum bicolor]
 gi|241920207|gb|EER93351.1| hypothetical protein SORBIDRAFT_01g006260 [Sorghum bicolor]
          Length = 862

 Score =  300 bits (767), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 173/571 (30%), Positives = 294/571 (51%), Gaps = 64/571 (11%)

Query: 28  ISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPT 87
           +  G L EA+     + + G R  + TL  +L    +   LK GK VH ++ +       
Sbjct: 319 VQNGLLDEALGLFCDMLRSGARPDSVTLVSLLPALTDLNGLKQGKEVHGYI-IRNCVHMD 377

Query: 88  TFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAE 147
            FL + L+ +YFKC      R V                         + ARNL+D    
Sbjct: 378 AFLVSALVDIYFKC------RDV-------------------------RTARNLYDAARA 406

Query: 148 RDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQV 207
            DVV  +T+I GY  +G  E+ L+ ++ L    I  N  + A +L  C  +  L L +++
Sbjct: 407 IDVVIGSTVISGYVLNGMSEKALQMFRYLLEQCIKPNAVTVASVLPACASISALPLGQEI 466

Query: 208 HGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDM 267
           HG VL   +     + S+++D YAKCG L                     +S Y      
Sbjct: 467 HGYVLRNAYEGKCYVESALMDMYAKCGRLD--------------------LSHY------ 500

Query: 268 ESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCAC 327
                +F++M  K+ V+W ++I+ +++NG  Q+AL+LF +M +  I+ N  T SS L AC
Sbjct: 501 -----IFSKMSLKDEVTWNSMISSFSQNGEPQEALDLFRQMCMEGIKYNNVTISSALSAC 555

Query: 328 ASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLW 387
           AS+ ++ +GK++HG +I+   +++    S+LIDMY+KCG +    +VF+   +K N + W
Sbjct: 556 ASLPAIYYGKEIHGVIIKGPIKADIFAESALIDMYAKCGNMELALRVFEFMPDK-NEVSW 614

Query: 388 NTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTH 447
           N++ISA   HG  ++++   H M     KPD +T   +++AC H+GLV+EGL  F+ MT 
Sbjct: 615 NSIISAYGAHGLVKESVSFLHRMQEEGYKPDHVTFLALISACAHAGLVEEGLQLFQCMTK 674

Query: 448 DLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGR 507
           +  I P  EH AC+++L +++G  D+ +  +  MP++ D+ +W AL   CR+H N+++  
Sbjct: 675 EYLIAPRMEHFACMVDLYSRSGRLDKAIQFIADMPFKPDAGIWGALLHACRVHRNVELAD 734

Query: 508 KVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKV 567
               +L   +P +S  + L+S+I +  G+   V KVR+L+ + +  K    SW+++ N  
Sbjct: 735 IASQELFKLDPGNSGYYVLMSNINAVAGRWDGVSKVRRLMKDNKILKIPGYSWVDVNNSS 794

Query: 568 HAFSVSDSLHPMRDVLYSVLEQLAGQMGEDA 598
           H F  SD  HP  + +Y+ L+ L  ++ E+ 
Sbjct: 795 HLFVASDKSHPESEDIYTSLKALLQELREEG 825



 Score =  169 bits (428), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 136/526 (25%), Positives = 229/526 (43%), Gaps = 80/526 (15%)

Query: 28  ISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPT 87
           I  G +  A+     +   G      TLA  L  CA    L  G ++H            
Sbjct: 218 IKAGDVGGAVRLFRNMRVSGCEPNFATLACFLSVCAAEADLLSGVQLH------------ 265

Query: 88  TFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAE 147
                   S+  KCG +            + +   N +LS YA    +  A  LF+ +  
Sbjct: 266 --------SLAVKCGLE------------QEVAVANTLLSMYAKCRCLDDAWRLFELLPR 305

Query: 148 RDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQV 207
            D+V+WN MI G  ++G ++E L  +  + R     +  +   +L     L  LK  ++V
Sbjct: 306 DDLVTWNGMISGCVQNGLLDEALGLFCDMLRSGARPDSVTLVSLLPALTDLNGLKQGKEV 365

Query: 208 HGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDM 267
           HG ++      +  + S++VD Y KC ++  AR L+D   A DV                
Sbjct: 366 HGYIIRNCVHMDAFLVSALVDIYFKCRDVRTARNLYDAARAIDV---------------- 409

Query: 268 ESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCAC 327
                          V  +T+I+GY  NG+ +KAL++F  ++   I+PN  T +S L AC
Sbjct: 410 ---------------VIGSTVISGYVLNGMSEKALQMFRYLLEQCIKPNAVTVASVLPAC 454

Query: 328 ASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLW 387
           ASI +L  G+++HG+++R  +     V S+L+DMY+KCG L+    +F     K+  + W
Sbjct: 455 ASISALPLGQEIHGYVLRNAYEGKCYVESALMDMYAKCGRLDLSHYIFSKMSLKDE-VTW 513

Query: 388 NTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTH 447
           N+MIS+ +Q+G  ++A+ LF  M    +K + +T++  L+AC     +     Y+    H
Sbjct: 514 NSMISSFSQNGEPQEALDLFRQMCMEGIKYNNVTISSALSACASLPAI-----YYGKEIH 568

Query: 448 DLGIIPNQEHHA------CLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHG 501
             G+I      A       LI++ A+ G  +  +   E MP + +   WN++      HG
Sbjct: 569 --GVIIKGPIKADIFAESALIDMYAKCGNMELALRVFEFMP-DKNEVSWNSIISAYGAHG 625

Query: 502 NIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLI 547
            +      + ++  Q       H    ++ SA     LVE+  QL 
Sbjct: 626 LVKESVSFLHRM--QEEGYKPDHVTFLALISACAHAGLVEEGLQLF 669



 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 103/397 (25%), Positives = 166/397 (41%), Gaps = 76/397 (19%)

Query: 52  AETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNH--------LISMYFKCGS 103
           A+ L  +L+ C  +  L LG ++H       R   +  LSNH        L+ MY     
Sbjct: 32  ADRLLALLRGCVSAPHLPLGLQIH------ARAVVSGALSNHNHLALHTRLLGMYVLARR 85

Query: 104 DVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKS 163
             DA  VF  +P                              A    + WN +I G+  +
Sbjct: 86  FRDAVAVFSALP----------------------------RAAAGSSLPWNWLIRGFTAA 117

Query: 164 GAVEEGLKFYKVL--RRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVV 221
           G     + FY  +     + S +  +   ++  C  L  + L R VH     TG  S+V 
Sbjct: 118 GHHSLAVLFYVKMWTHPAAPSPDAHTLPYVVKSCAALGAVSLGRLVHRTARATGLASDVY 177

Query: 222 ISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKN 281
           + S+++  Y+  G L DA         RD                       F+ MP ++
Sbjct: 178 VGSALIKMYSDAGLLRDA---------RDA----------------------FDGMPWRD 206

Query: 282 PVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHG 341
            V W  ++ GY + G    A+ LF  M +    PN  T +  L  CA+   L  G Q+H 
Sbjct: 207 CVLWNVMMDGYIKAGDVGGAVRLFRNMRVSGCEPNFATLACFLSVCAAEADLLSGVQLHS 266

Query: 342 FLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDE 401
             ++        V ++L+ MY+KC CL+D  ++F+L   +++ + WN MIS   Q+G  +
Sbjct: 267 LAVKCGLEQEVAVANTLLSMYAKCRCLDDAWRLFELLP-RDDLVTWNGMISGCVQNGLLD 325

Query: 402 QAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEG 438
           +A+ LF DM+RS  +PD +TL  +L A T    +++G
Sbjct: 326 EALGLFCDMLRSGARPDSVTLVSLLPALTDLNGLKQG 362



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 83/323 (25%), Positives = 134/323 (41%), Gaps = 42/323 (13%)

Query: 190 GILTICVKLEELKLTRQVHGQVLVTGFLSN---VVISSSIVDAYAKCGELSDARRLFDET 246
            +L  CV    L L  Q+H + +V+G LSN   + + + ++  Y        ARR  D  
Sbjct: 37  ALLRGCVSAPHLPLGLQIHARAVVSGALSNHNHLALHTRLLGMYVL------ARRFRD-- 88

Query: 247 DARDVLTWTTMVSGYAKLGDMESASKLFNEMPEK---NPVSWTTLIAGYTRNGLGQKALE 303
                                  A  +F+ +P     + + W  LI G+T  G    A+ 
Sbjct: 89  -----------------------AVAVFSALPRAAAGSSLPWNWLIRGFTAAGHHSLAVL 125

Query: 304 LFTRMMI--LRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDM 361
            + +M        P+ HT    + +CA++ ++  G+ VH     T   S+  V S+LI M
Sbjct: 126 FYVKMWTHPAAPSPDAHTLPYVVKSCAALGAVSLGRLVHRTARATGLASDVYVGSALIKM 185

Query: 362 YSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKIT 421
           YS  G L D R  FD    ++  +LWN M+    + G    A+RLF +M  S  +P+  T
Sbjct: 186 YSDAGLLRDARDAFDGMPWRD-CVLWNVMMDGYIKAGDVGGAVRLFRNMRVSGCEPNFAT 244

Query: 422 LAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKM 481
           LA  L+ C     +  G+    S+    G+         L+ + A+  C D      E +
Sbjct: 245 LACFLSVCAAEADLLSGVQ-LHSLAVKCGLEQEVAVANTLLSMYAKCRCLDDAWRLFELL 303

Query: 482 PYEHDSYLWNALHGVCRIHGNID 504
           P + D   WN +   C  +G +D
Sbjct: 304 PRD-DLVTWNGMISGCVQNGLLD 325



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 48/165 (29%), Positives = 82/165 (49%), Gaps = 8/165 (4%)

Query: 18  NCLIQSFLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLH 77
           N +I SF      G+  EA+     +   GI+    T++  L  CA   ++  GK +H  
Sbjct: 514 NSMISSF---SQNGEPQEALDLFRQMCMEGIKYNNVTISSALSACASLPAIYYGKEIH-G 569

Query: 78  LKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKH 137
           + +        F  + LI MY KCG+   A +VF+ +P KN  S+N+++S Y   G++K 
Sbjct: 570 VIIKGPIKADIFAESALIDMYAKCGNMELALRVFEFMPDKNEVSWNSIISAYGAHGLVKE 629

Query: 138 ARNLFDNMAER----DVVSWNTMIIGYAKSGAVEEGLKFYKVLRR 178
           + +    M E     D V++  +I   A +G VEEGL+ ++ + +
Sbjct: 630 SVSFLHRMQEEGYKPDHVTFLALISACAHAGLVEEGLQLFQCMTK 674


>gi|222622350|gb|EEE56482.1| hypothetical protein OsJ_05706 [Oryza sativa Japonica Group]
          Length = 799

 Score =  300 bits (767), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 163/552 (29%), Positives = 295/552 (53%), Gaps = 5/552 (0%)

Query: 47  GIRLPAETLAFILQ---QCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGS 103
           G+R    T  F+ +     +   SL L   +H     T   +   F+SN LI MY + G 
Sbjct: 98  GVRPDGFTFHFLFKCSSSSSRPHSLLLCTMLHAACLRTMLPSAAPFVSNSLIHMYIRLGL 157

Query: 104 DVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKS 163
             DAR+ FD+I VK+  ++  ++SG A +GM+   + L      RDV+SW ++I  Y+++
Sbjct: 158 AADARRAFDEIHVKDAVAWTMLISGLAKMGMLCDTQLLLSQAPVRDVISWTSLIAAYSRA 217

Query: 164 GAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVIS 223
               E +  +K +    I+ +E +   +L+ C KL++L+L R +H  V   G  ++  + 
Sbjct: 218 NRAREAVGCFKTMLSHGIAPDEVTVIAVLSACAKLKDLELGRSLHLLVEEKGMPTSENLV 277

Query: 224 SSIVDAYAKCGELSDARRLFDETD-ARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNP 282
            +++D YAKCG+   A+++FD         +W  ++ GY K G ++ A  LF+EM  ++ 
Sbjct: 278 VALIDMYAKCGDFGHAQQVFDALGRGPRPQSWNAIIDGYCKHGHVDVARSLFDEMEVRDI 337

Query: 283 VSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGF 342
           +++ +++ GY  +G  ++AL LF  M    +R +  T  + L ACAS+ +L+ G+ +H  
Sbjct: 338 ITFNSMMTGYIHSGQLREALLLFMSMRRHDLRVDNFTVVNLLTACASLGALQQGRALHAC 397

Query: 343 LIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQ 402
           + +    ++  + ++L+DMY KCG +++   VF     K +   W  MI+ L  +G  + 
Sbjct: 398 IEQRLVEADIYLGTALLDMYMKCGRVDEATIVFQRM-GKRDVHTWTAMIAGLAFNGMGKA 456

Query: 403 AIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLI 462
           A+  F+ M     +P+ ++   +L AC+HS L+ EG  YF+ M     I P  EH+ C+I
Sbjct: 457 ALEHFYQMRCDGFQPNSVSYIAVLTACSHSCLLNEGRLYFDEMRILYNIHPQIEHYGCMI 516

Query: 463 ELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSA 522
           +LL ++G  D+ M+ ++ MP + ++ +W ++   CR+H +ID+ +   + L+   P    
Sbjct: 517 DLLGRSGLLDEAMDLVKTMPIQPNAVIWASILSACRVHKHIDLAQCAAEHLLKLEPDEDG 576

Query: 523 THGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDV 582
            +  L +IY    +     K+R L+ ERQ KK    S I +  +VH F VSD  HP    
Sbjct: 577 VYVQLYNIYIDSRQWENASKIRMLMEERQVKKTAGYSSITVAGQVHKFVVSDKSHPRILE 636

Query: 583 LYSVLEQLAGQM 594
           + ++LE+++ ++
Sbjct: 637 IIAMLEEISHRL 648



 Score =  158 bits (399), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 109/392 (27%), Positives = 184/392 (46%), Gaps = 44/392 (11%)

Query: 21  IQSFLSLISK----GQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHL 76
           + S+ SLI+      +  EA+     +   GI     T+  +L  CA+ K L+LG+   L
Sbjct: 204 VISWTSLIAAYSRANRAREAVGCFKTMLSHGIAPDEVTVIAVLSACAKLKDLELGRS--L 261

Query: 77  HLKLTQRKTPTTF-LSNHLISMYFKCGSDVDARKVFDKI---PVKNLFSYNNMLSGYANL 132
           HL + ++  PT+  L   LI MY KCG    A++VFD +   P     S+N ++ GY   
Sbjct: 262 HLLVEEKGMPTSENLVVALIDMYAKCGDFGHAQQVFDALGRGPRPQ--SWNAIIDGYCKH 319

Query: 133 GMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGIL 192
           G +  AR+LFD M  RD++++N+M+ GY  SG + E L  +  +RR  +  + F+   +L
Sbjct: 320 GHVDVARSLFDEMEVRDIITFNSMMTGYIHSGQLREALLLFMSMRRHDLRVDNFTVVNLL 379

Query: 193 TICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVL 252
           T C  L  L+  R +H  +      +++ + ++++D Y KCG + +A  +F     RDV 
Sbjct: 380 TACASLGALQQGRALHACIEQRLVEADIYLGTALLDMYMKCGRVDEATIVFQRMGKRDVH 439

Query: 253 TWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILR 312
           TWT M                               IAG   NG+G+ ALE F +M    
Sbjct: 440 TWTAM-------------------------------IAGLAFNGMGKAALEHFYQMRCDG 468

Query: 313 IRPNQHTFSSCLCACASIVSLKHGKQVHGFL-IRTNFRSNTIVMSSLIDMYSKCGCLNDG 371
            +PN  ++ + L AC+    L  G+     + I  N          +ID+  + G L++ 
Sbjct: 469 FQPNSVSYIAVLTACSHSCLLNEGRLYFDEMRILYNIHPQIEHYGCMIDLLGRSGLLDEA 528

Query: 372 RQVFDLTDNKENSMLWNTMISALTQHGYDEQA 403
             +      + N+++W +++SA   H + + A
Sbjct: 529 MDLVKTMPIQPNAVIWASILSACRVHKHIDLA 560



 Score = 68.9 bits (167), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 68/285 (23%), Positives = 120/285 (42%), Gaps = 43/285 (15%)

Query: 267 MESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFS---SC 323
           +  A  LF+ MP    +  T L A         +   LF RM    +RP+  TF     C
Sbjct: 53  LRYALHLFDRMPPSTFLFDTALRACSRAGSDPHRPFLLFRRMRRAGVRPDGFTFHFLFKC 112

Query: 324 LCACASIVSLKHGKQVHGFLIRTNFRSNT-IVMSSLIDMYSKCGCLNDGRQVFD---LTD 379
             + +   SL     +H   +RT   S    V +SLI MY + G   D R+ FD   + D
Sbjct: 113 SSSSSRPHSLLLCTMLHAACLRTMLPSAAPFVSNSLIHMYIRLGLAADARRAFDEIHVKD 172

Query: 380 NKENSML---------------------------WNTMISALTQHGYDEQAIRLFHDMVR 412
               +ML                           W ++I+A ++     +A+  F  M+ 
Sbjct: 173 AVAWTMLISGLAKMGMLCDTQLLLSQAPVRDVISWTSLIAAYSRANRAREAVGCFKTMLS 232

Query: 413 SSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQA---G 469
             + PD++T+  +L+AC     ++ G +    +  + G+  ++     LI++ A+    G
Sbjct: 233 HGIAPDEVTVIAVLSACAKLKDLELGRS-LHLLVEEKGMPTSENLVVALIDMYAKCGDFG 291

Query: 470 CSDQLMNQLEKMPYEHDSYLWNA-LHGVCRIHGNIDMGRKVVDQL 513
            + Q+ + L + P       WNA + G C+ HG++D+ R + D++
Sbjct: 292 HAQQVFDALGRGPRPQS---WNAIIDGYCK-HGHVDVARSLFDEM 332


>gi|359488803|ref|XP_002272525.2| PREDICTED: putative pentatricopeptide repeat-containing protein
            At5g09950 [Vitis vinifera]
          Length = 1291

 Score =  300 bits (767), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 154/466 (33%), Positives = 258/466 (55%), Gaps = 32/466 (6%)

Query: 129  YANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSF 188
            Y +   +  A  +F+++       WN MI G+A  G     L+ Y  +    +  ++F+F
Sbjct: 762  YVSFNRIDAASIVFEDIPNPCSFLWNVMIRGFATDGRFLSSLELYSKMMEKGLKPDKFAF 821

Query: 189  AGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDA 248
               L  C  L +L+  + +H  ++  G  +++ + +++VD YAKC               
Sbjct: 822  PFALKSCAGLSDLQRGKVIHQHLVCCGCSNDLFVDAALVDMYAKC--------------- 866

Query: 249  RDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRM 308
                            GD+E+A  +F++M  ++ VSWT++I+GY  NG   + L  F  M
Sbjct: 867  ----------------GDIEAARLVFDKMAVRDLVSWTSMISGYAHNGYNSETLGFFDLM 910

Query: 309  MILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCL 368
                + PN+ +  S L AC ++ +L+ G+  H ++I+T F  + +V ++++DMYSKCG L
Sbjct: 911  RSSGVIPNRVSILSVLLACGNLGALRKGEWFHSYVIQTGFEFDILVATAIMDMYSKCGSL 970

Query: 369  NDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNA 428
            +  R +FD T  K+  + W+ MI++   HG+  +AI LF  MV++ V+P  +T   +L+A
Sbjct: 971  DLARCLFDETAGKD-LVCWSAMIASYGIHGHGRKAIDLFDQMVKAGVRPSHVTFTCVLSA 1029

Query: 429  CTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSY 488
            C+HSGL++EG  YF+ MT +  I     ++AC+++LL +AG   + ++ +E MP E D+ 
Sbjct: 1030 CSHSGLLEEGKMYFQLMTEEFVIARKLSNYACMVDLLGRAGQLSEAVDLIENMPVEPDAS 1089

Query: 489  LWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLIN 548
            +W +L G CRIH N+D+  K+ D L   +P  +  H LLS+IY+A  +   VEKVR+++ 
Sbjct: 1090 IWGSLLGACRIHNNLDLAEKIADHLFHLDPVHAGYHVLLSNIYAAKSRWNEVEKVRKMMA 1149

Query: 549  ERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQM 594
             R   K Q  S +E +N+VH F V D  HP  + LY+ LE+LA  M
Sbjct: 1150 RRGANKIQGFSLVEYDNQVHKFGVGDRSHPQWEKLYAKLEELAAPM 1195



 Score =  286 bits (733), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 164/498 (32%), Positives = 261/498 (52%), Gaps = 39/498 (7%)

Query: 108 RKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVE 167
           R+ FD     +L   N++L+ YA  G  K A NLF  M E+DV+SW+TMI  YA + A  
Sbjct: 234 RREFDG----DLPLVNSLLNLYAKTGCEKIAANLFSKMPEKDVISWSTMIACYANNEAAN 289

Query: 168 EGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIV 227
           E L  +  +       N  +    L  C     L+  +++H   +  GF  +  +S++++
Sbjct: 290 EALNLFHEMIEKRFEPNSVTVVSALQACAVSRNLEEGKKIHKIAVWKGFELDFSVSTALI 349

Query: 228 DAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTT 287
           D Y KC          DE                        A  LF  +P+K+ VSW  
Sbjct: 350 DMYMKCS-------CPDE------------------------AVDLFQRLPKKDVVSWVA 378

Query: 288 LIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTN 347
           L++GY +NG+  K++ +F  M+   I+P+       L A + +   +    +HG+++R+ 
Sbjct: 379 LLSGYAQNGMAYKSMGVFRNMLSDGIQPDAVAVVKILAASSELGIFQQALCLHGYVVRSG 438

Query: 348 FRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLF 407
           F SN  V +SLI++YSKCG L D  ++F     ++  ++W++MI+A   HG   +A+ +F
Sbjct: 439 FNSNVFVGASLIELYSKCGSLGDAVKLFKGMIVRD-VVIWSSMIAAYGIHGRGGEALEIF 497

Query: 408 HDMVR-SSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLA 466
             MV+ S+V+P+ +T   IL+AC+H+GLV+EGL  F+ M HD  + P+ EH   +++LL 
Sbjct: 498 DQMVKNSTVRPNNVTFLSILSACSHAGLVEEGLKIFDRMVHDYQLRPDSEHFGIMVDLLG 557

Query: 467 QAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGL 526
           + G   + M+ + +MP     ++W AL G CRIH NI+MG      L   +P  +  + L
Sbjct: 558 RIGQLGKAMDIINRMPIPAGPHVWGALLGACRIHHNIEMGEAAAKNLFWLDPSHAGYYIL 617

Query: 527 LSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSV 586
           LS+IY+  GK   V ++R  I ER  KK    S +E+   VH+F  SD  HP    +Y +
Sbjct: 618 LSNIYAVDGKWDNVAELRTRIKERGLKKMFGQSMVEVRGGVHSFLASDRFHPDSQKIYEL 677

Query: 587 LEQLAGQMGEDA--PSLD 602
           L +L  QMG++   P LD
Sbjct: 678 LRKLEAQMGKEVYIPDLD 695



 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 108/407 (26%), Positives = 191/407 (46%), Gaps = 77/407 (18%)

Query: 13   KNLPNNCLIQSFL-SLISKGQLSEA--ISSLDL---LAQRGIRLPAETLAFILQQCAESK 66
            +++PN C   SFL +++ +G  ++   +SSL+L   + ++G++       F L+ CA   
Sbjct: 776  EDIPNPC---SFLWNVMIRGFATDGRFLSSLELYSKMMEKGLKPDKFAFPFALKSCAGLS 832

Query: 67   SLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNML 126
             L+ GK +H HL +    +   F+   L+ MY KCG D++A                   
Sbjct: 833  DLQRGKVIHQHL-VCCGCSNDLFVDAALVDMYAKCG-DIEA------------------- 871

Query: 127  SGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEF 186
                       AR +FD MA RD+VSW +MI GYA +G   E L F+ ++R   +  N  
Sbjct: 872  -----------ARLVFDKMAVRDLVSWTSMISGYAHNGYNSETLGFFDLMRSSGVIPNRV 920

Query: 187  SFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDET 246
            S   +L  C  L  L+     H  V+ TGF  +++++++I+D Y+KCG L  AR LFDET
Sbjct: 921  SILSVLLACGNLGALRKGEWFHSYVIQTGFEFDILVATAIMDMYSKCGSLDLARCLFDET 980

Query: 247  DARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFT 306
              +D++ W+ M++ Y                                 +G G+KA++LF 
Sbjct: 981  AGKDLVCWSAMIASYGI-------------------------------HGHGRKAIDLFD 1009

Query: 307  RMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIV-MSSLIDMYSKC 365
            +M+   +RP+  TF+  L AC+    L+ GK     +      +  +   + ++D+  + 
Sbjct: 1010 QMVKAGVRPSHVTFTCVLSACSHSGLLEEGKMYFQLMTEEFVIARKLSNYACMVDLLGRA 1069

Query: 366  GCLNDGRQVFDLTDNKENSMLWNTMISALTQHG----YDEQAIRLFH 408
            G L++   + +    + ++ +W +++ A   H      ++ A  LFH
Sbjct: 1070 GQLSEAVDLIENMPVEPDASIWGSLLGACRIHNNLDLAEKIADHLFH 1116



 Score =  145 bits (365), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 128/528 (24%), Positives = 220/528 (41%), Gaps = 108/528 (20%)

Query: 88  TFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAE 147
           TF +  L S+Y KC S   ARKVFD+ P  N                             
Sbjct: 36  TFFATKLNSLYAKCASLQAARKVFDETPHPN----------------------------- 66

Query: 148 RDVVSWNTMIIGYAKSGAVEEGLK-FYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQ 206
             V  WN+ +  Y +    EE L+ F+ ++     + + F+    L  C  L  L+L + 
Sbjct: 67  --VHLWNSTLRSYCREKQWEETLRLFHLMICTAGEAPDNFTIPIALKACAGLRMLELGKV 124

Query: 207 VHGQVLVTGFL-SNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLG 265
           +HG       + S++ + S++V+ Y+KCG++ +A ++F+E    D + WT+MV+GY +  
Sbjct: 125 IHGFAKKNDEIGSDMFVGSALVELYSKCGQMGEALKVFEEFQRPDTVLWTSMVTGYQQNN 184

Query: 266 DMESASKLFNEMPEK-----NPVSWTTLIAG----------------------------- 291
           D E A  LF++M        +PV+  ++++                              
Sbjct: 185 DPEEALALFSQMVMMDCVVLDPVTLVSVVSACAQLLNVKAGSCVHGLVIRREFDGDLPLV 244

Query: 292 ------YTRNGLGQKALELFTRM----------MIL---------------------RIR 314
                 Y + G  + A  LF++M          MI                      R  
Sbjct: 245 NSLLNLYAKTGCEKIAANLFSKMPEKDVISWSTMIACYANNEAANEALNLFHEMIEKRFE 304

Query: 315 PNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQV 374
           PN  T  S L ACA   +L+ GK++H   +   F  +  V ++LIDMY KC C ++   +
Sbjct: 305 PNSVTVVSALQACAVSRNLEEGKKIHKIAVWKGFELDFSVSTALIDMYMKCSCPDEAVDL 364

Query: 375 FDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGL 434
           F     K++ + W  ++S   Q+G   +++ +F +M+   ++PD + +  IL A +  G+
Sbjct: 365 FQRLP-KKDVVSWVALLSGYAQNGMAYKSMGVFRNMLSDGIQPDAVAVVKILAASSELGI 423

Query: 435 VQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALH 494
            Q+ L     +    G   N    A LIEL ++ G     +   + M    D  +W+++ 
Sbjct: 424 FQQALCLHGYVVRS-GFNSNVFVGASLIELYSKCGSLGDAVKLFKGMIVR-DVVIWSSMI 481

Query: 495 GVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEK 542
               IHG      ++ DQ++ +N      +    SI SA     LVE+
Sbjct: 482 AAYGIHGRGGEALEIFDQMV-KNSTVRPNNVTFLSILSACSHAGLVEE 528



 Score =  138 bits (348), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 99/392 (25%), Positives = 185/392 (47%), Gaps = 45/392 (11%)

Query: 109 KVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEE 168
           +VF    + + F    + S YA    ++ AR +FD     +V  WN+ +  Y +    EE
Sbjct: 26  QVFKTGILHDTFFATKLNSLYAKCASLQAARKVFDETPHPNVHLWNSTLRSYCREKQWEE 85

Query: 169 GLK-FYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIV 227
            L+ F+ ++     + + F+    L  C  L  L+L + +HG                  
Sbjct: 86  TLRLFHLMICTAGEAPDNFTIPIALKACAGLRMLELGKVIHG------------------ 127

Query: 228 DAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTT 287
             +AK           DE  + D+   + +V  Y+K G M  A K+F E    + V WT+
Sbjct: 128 --FAKKN---------DEIGS-DMFVGSALVELYSKCGQMGEALKVFEEFQRPDTVLWTS 175

Query: 288 LIAGYTRNGLGQKALELFTRMMILR-IRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRT 346
           ++ GY +N   ++AL LF++M+++  +  +  T  S + ACA ++++K G  VHG +IR 
Sbjct: 176 MVTGYQQNNDPEEALALFSQMVMMDCVVLDPVTLVSVVSACAQLLNVKAGSCVHGLVIRR 235

Query: 347 NFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRL 406
            F  +  +++SL+++Y+K GC      +F     K+  + W+TMI+    +    +A+ L
Sbjct: 236 EFDGDLPLVNSLLNLYAKTGCEKIAANLFSKMPEKD-VISWSTMIACYANNEAANEALNL 294

Query: 407 FHDMVRSSVKPDKITLAVILNACTHSGLVQEG-----LTYFESMTHDLGIIPNQEHHACL 461
           FH+M+    +P+ +T+   L AC  S  ++EG     +  ++    D  +         L
Sbjct: 295 FHEMIEKRFEPNSVTVVSALQACAVSRNLEEGKKIHKIAVWKGFELDFSV------STAL 348

Query: 462 IELLAQAGCSDQLMNQLEKMPYEHDSYLWNAL 493
           I++  +  C D+ ++  +++P + D   W AL
Sbjct: 349 IDMYMKCSCPDEAVDLFQRLP-KKDVVSWVAL 379



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 79/296 (26%), Positives = 149/296 (50%), Gaps = 44/296 (14%)

Query: 34  SEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNH 93
           +EA++    + ++     + T+   LQ CA S++L+ GK++H  + + +       +S  
Sbjct: 289 NEALNLFHEMIEKRFEPNSVTVVSALQACAVSRNLEEGKKIH-KIAVWKGFELDFSVSTA 347

Query: 94  LISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSW 153
           LI MY KC    +A  +F ++P K++ S+  +LSGYA  GM   +  +F NM        
Sbjct: 348 LIDMYMKCSCPDEAVDLFQRLPKKDVVSWVALLSGYAQNGMAYKSMGVFRNM-------- 399

Query: 154 NTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQ---VHGQ 210
                       + +G++   V               ++ I     EL + +Q   +HG 
Sbjct: 400 ------------LSDGIQPDAV--------------AVVKILAASSELGIFQQALCLHGY 433

Query: 211 VLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESA 270
           V+ +GF SNV + +S+++ Y+KCG L DA +LF     RDV+ W++M++ Y   G    A
Sbjct: 434 VVRSGFNSNVFVGASLIELYSKCGSLGDAVKLFKGMIVRDVVIWSSMIAAYGIHGRGGEA 493

Query: 271 SKLFNEMPEK-----NPVSWTTLIAGYTRNGLGQKALELFTRMM-ILRIRPNQHTF 320
            ++F++M +      N V++ ++++  +  GL ++ L++F RM+   ++RP+   F
Sbjct: 494 LEIFDQMVKNSTVRPNNVTFLSILSACSHAGLVEEGLKIFDRMVHDYQLRPDSEHF 549



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 83/295 (28%), Positives = 133/295 (45%), Gaps = 45/295 (15%)

Query: 206 QVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLG 265
           Q+H QV  TG L +   ++ +   YAKC  L  AR++FDET   +V  W + +  Y +  
Sbjct: 22  QLHSQVFKTGILHDTFFATKLNSLYAKCASLQAARKVFDETPHPNVHLWNSTLRSYCREK 81

Query: 266 DMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLC 325
             E   +LF+ M            AG                       P+  T    L 
Sbjct: 82  QWEETLRLFHLM---------ICTAGEA---------------------PDNFTIPIALK 111

Query: 326 ACASIVSLKHGKQVHGFLIRTN-FRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENS 384
           ACA +  L+ GK +HGF  + +   S+  V S+L+++YSKCG + +  +VF+    + ++
Sbjct: 112 ACAGLRMLELGKVIHGFAKKNDEIGSDMFVGSALVELYSKCGQMGEALKVFE-EFQRPDT 170

Query: 385 MLWNTMISALTQHGYDEQAIRLFHDMV-RSSVKPDKITLAVILNACTH-----SGLVQEG 438
           +LW +M++   Q+   E+A+ LF  MV    V  D +TL  +++AC       +G    G
Sbjct: 171 VLWTSMVTGYQQNNDPEEALALFSQMVMMDCVVLDPVTLVSVVSACAQLLNVKAGSCVHG 230

Query: 439 LTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNAL 493
           L        DL ++ +      L+ L A+ GC     N   KMP E D   W+ +
Sbjct: 231 LVIRREFDGDLPLVNS------LLNLYAKTGCEKIAANLFSKMP-EKDVISWSTM 278


>gi|449526834|ref|XP_004170418.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 666

 Score =  300 bits (767), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 161/509 (31%), Positives = 271/509 (53%), Gaps = 44/509 (8%)

Query: 125 MLSGYAN--LGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSIS 182
           +L  YAN        A  +F ++   +V  WN +I G  ++  + + + FY    R  I 
Sbjct: 71  LLKCYANPHFSNFDFALKVFSSIPNPNVFIWNIVIKGCLENNKLFKAIYFYG---RMVID 127

Query: 183 C--NEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISS---------------- 224
              N+F++  +   C   + ++  RQ+HG V+  G  S+V I S                
Sbjct: 128 ARPNKFTYPTLFKACSVAQAVQEGRQIHGHVVKHGIGSDVHIKSAGIQMYASFGRLEDAR 187

Query: 225 --------------SIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESA 270
                         +++D Y KCG L  A+ LF +   +++ +W  M++G AK G++  A
Sbjct: 188 KMFYSGESDVVCWNTMIDGYLKCGVLEAAKGLFAQMPVKNIGSWNVMINGLAKGGNLGDA 247

Query: 271 SKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASI 330
            KLF+EM E++ +SW++++ GY   G  ++ALE+F +M     RP +   SS L AC++I
Sbjct: 248 RKLFDEMSERDEISWSSMVDGYISAGRYKEALEIFQQMQREETRPGRFILSSVLAACSNI 307

Query: 331 VSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTM 390
            ++  G+ VH +L R + + + ++ ++L+DMY+KCG L+ G +VF+    +E    WN M
Sbjct: 308 GAIDQGRWVHAYLKRNSIKLDAVLGTALLDMYAKCGRLDMGWEVFEEMKERE-IFTWNAM 366

Query: 391 ISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLG 450
           I  L  HG  E A+ LF  +    +KP+ ITL  +L AC H+G V +GL  F++M    G
Sbjct: 367 IGGLAIHGRAEDALELFSKLQEGRMKPNGITLVGVLTACAHAGFVDKGLRIFQTMREFYG 426

Query: 451 IIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVV 510
           + P  EH+ C+++LL ++G   +  + +  MP + ++ +W AL G CRIHGN D+  +V 
Sbjct: 427 VDPELEHYGCMVDLLGRSGLFSEAEDLINSMPMKPNAAVWGALLGACRIHGNFDLAERVG 486

Query: 511 DQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAF 570
             L++  PQ+S  + LLS+IY+ +G+   V K+R+L+  R  K    +S +++   VH F
Sbjct: 487 KILLELEPQNSGRYVLLSNIYAKVGRFDDVSKIRKLMKNRGIKTVPGVSIVDLNGTVHEF 546

Query: 571 SVSDSLHPMRDVLYSVLE------QLAGQ 593
            + D  HP    +Y  L+      Q+AG 
Sbjct: 547 KMGDGSHPQMKEIYRKLKIIKERLQMAGH 575


>gi|356552027|ref|XP_003544373.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g16860-like [Glycine max]
          Length = 986

 Score =  300 bits (767), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 170/554 (30%), Positives = 283/554 (51%), Gaps = 50/554 (9%)

Query: 54  TLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDK 113
           +L  IL  CA   +   G++VH    +        F+ N ++ MY KCG   +A KVF +
Sbjct: 366 SLVNILPACASLAASLRGRQVH-GFSIRSGLVDDVFVGNAVVDMYAKCGKMEEANKVFQR 424

Query: 114 IPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAER----DVVSWNTMIIGYAKSGAVEEG 169
           +  K++ S+N M++GY+  G ++HA +LF+ M E     DVV+W  +I GYA+ G   E 
Sbjct: 425 MKFKDVVSWNAMVTGYSQAGRLEHALSLFERMTEENIELDVVTWTAVITGYAQRGQGCEA 484

Query: 170 LKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNV--------- 220
           L  ++ +       N  +   +L+ CV +  L   ++ H   +   F+ N+         
Sbjct: 485 LDVFRQMCDCGSRPNVVTLVSLLSACVSVGALLHGKETHCYAI--KFILNLDGPDPGADD 542

Query: 221 -VISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPE 279
             + + ++D YAKC     AR++FD    +D                             
Sbjct: 543 LKVINGLIDMYAKCQSTEVARKMFDSVSPKD----------------------------- 573

Query: 280 KNPVSWTTLIAGYTRNGLGQKALELFTRM--MILRIRPNQHTFSSCLCACASIVSLKHGK 337
           ++ V+WT +I GY ++G    AL+LF+ M  M   I+PN  T S  L ACA + +L+ G+
Sbjct: 574 RDVVTWTVMIGGYAQHGDANNALQLFSGMFKMDKSIKPNDFTLSCALVACARLAALRFGR 633

Query: 338 QVHGFLIRTNFRSNTI-VMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQ 396
           QVH +++R  + S  + V + LIDMYSK G ++  + VFD    + N++ W ++++    
Sbjct: 634 QVHAYVLRNFYGSVMLFVANCLIDMYSKSGDVDTAQIVFDNMPQR-NAVSWTSLMTGYGM 692

Query: 397 HGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQE 456
           HG  E A+R+F +M +  + PD IT  V+L AC+HSG+V  G+ +F  M+ D G+ P  E
Sbjct: 693 HGRGEDALRVFDEMRKVPLVPDGITFLVVLYACSHSGMVDHGINFFNRMSKDFGVDPGPE 752

Query: 457 HHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQ 516
           H+AC+++L  +AG   + M  + +MP E    +W AL   CR+H N+++G    ++L++ 
Sbjct: 753 HYACMVDLWGRAGRLGEAMKLINEMPMEPTPVVWVALLSACRLHSNVELGEFAANRLLEL 812

Query: 517 NPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSL 576
              +  ++ LLS+IY+   + + V ++R  +     KK    SWI+    V  F V D  
Sbjct: 813 ESGNDGSYTLLSNIYANARRWKDVARIRYTMKRTGIKKRPGCSWIQGRKGVATFYVGDRS 872

Query: 577 HPMRDVLYSVLEQL 590
           HP    +Y  L  L
Sbjct: 873 HPQSQQIYETLADL 886



 Score =  216 bits (551), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 131/420 (31%), Positives = 217/420 (51%), Gaps = 30/420 (7%)

Query: 118 NLFSYNNMLSGYANLGMMKHARNLFDNMAER---DVVSWNTMIIGYAKSGAVEEGLK-FY 173
           N+F  N ++S Y   G ++HA N+FD++  R   D+VSWN+++  Y  +      L  F+
Sbjct: 293 NVFVCNAVVSMYGKCGALRHAHNMFDDLCHRGIQDLVSWNSVVSAYMWASDANTALALFH 352

Query: 174 KVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKC 233
           K+  R  +S +  S   IL  C  L      RQVHG  + +G + +V + +++VD YAKC
Sbjct: 353 KMTTRHLMSPDVISLVNILPACASLAASLRGRQVHGFSIRSGLVDDVFVGNAVVDMYAKC 412

Query: 234 GELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKN----PVSWTTLI 289
           G++ +A ++F     +DV++W  MV+GY++ G +E A  LF  M E+N     V+WT +I
Sbjct: 413 GKMEEANKVFQRMKFKDVVSWNAMVTGYSQAGRLEHALSLFERMTEENIELDVVTWTAVI 472

Query: 290 AGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFR 349
            GY + G G +AL++F +M     RPN  T  S L AC S+ +L HGK+ H + I+    
Sbjct: 473 TGYAQRGQGCEALDVFRQMCDCGSRPNVVTLVSLLSACVSVGALLHGKETHCYAIKFILN 532

Query: 350 --------SNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSML-WNTMISALTQHGYD 400
                    +  V++ LIDMY+KC      R++FD    K+  ++ W  MI    QHG  
Sbjct: 533 LDGPDPGADDLKVINGLIDMYAKCQSTEVARKMFDSVSPKDRDVVTWTVMIGGYAQHGDA 592

Query: 401 EQAIRLFHDMVR--SSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHD-----LGIIP 453
             A++LF  M +   S+KP+  TL+  L AC     ++ G      +  +     +  + 
Sbjct: 593 NNALQLFSGMFKMDKSIKPNDFTLSCALVACARLAALRFGRQVHAYVLRNFYGSVMLFVA 652

Query: 454 NQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQL 513
           N     CLI++ +++G  D      + MP + ++  W +L     +HG  +   +V D++
Sbjct: 653 N-----CLIDMYSKSGDVDTAQIVFDNMP-QRNAVSWTSLMTGYGMHGRGEDALRVFDEM 706



 Score =  132 bits (331), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 84/308 (27%), Positives = 142/308 (46%), Gaps = 35/308 (11%)

Query: 150 VVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHG 209
           V  WN +I      G+  +    Y+ ++    + + ++F  +   C  L  L L   +H 
Sbjct: 224 VFWWNQLIRRALHLGSPRDVFTLYRQMKSLGWTPDHYTFPFVFKACANLSSLSLGASLHA 283

Query: 210 QVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDAR---DVLTWTTMVSGYAKLGD 266
            V  +GF SNV + +++V  Y KCG L  A  +FD+   R   D+++W ++VS Y    D
Sbjct: 284 TVSRSGFASNVFVCNAVVSMYGKCGALRHAHNMFDDLCHRGIQDLVSWNSVVSAYMWASD 343

Query: 267 MESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCA 326
             +A  LF++M  ++ +S                              P+  +  + L A
Sbjct: 344 ANTALALFHKMTTRHLMS------------------------------PDVISLVNILPA 373

Query: 327 CASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSML 386
           CAS+ +   G+QVHGF IR+    +  V ++++DMY+KCG + +  +VF     K+  + 
Sbjct: 374 CASLAASLRGRQVHGFSIRSGLVDDVFVGNAVVDMYAKCGKMEEANKVFQRMKFKD-VVS 432

Query: 387 WNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMT 446
           WN M++  +Q G  E A+ LF  M   +++ D +T   ++      G   E L  F  M 
Sbjct: 433 WNAMVTGYSQAGRLEHALSLFERMTEENIELDVVTWTAVITGYAQRGQGCEALDVFRQMC 492

Query: 447 HDLGIIPN 454
            D G  PN
Sbjct: 493 -DCGSRPN 499



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 78/294 (26%), Positives = 132/294 (44%), Gaps = 45/294 (15%)

Query: 30  KGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVH-------LHLKLTQ 82
           +GQ  EA+     +   G R    TL  +L  C    +L  GK  H       L+L    
Sbjct: 478 RGQGCEALDVFRQMCDCGSRPNVVTLVSLLSACVSVGALLHGKETHCYAIKFILNLDGPD 537

Query: 83  RKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVK--NLFSYNNMLSGYANLGMMKHARN 140
                  + N LI MY KC S   ARK+FD +  K  ++ ++  M+ GYA  G   +A  
Sbjct: 538 PGADDLKVINGLIDMYAKCQSTEVARKMFDSVSPKDRDVVTWTVMIGGYAQHGDANNALQ 597

Query: 141 LFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEE 200
           LF  M + D                              SI  N+F+ +  L  C +L  
Sbjct: 598 LFSGMFKMDK-----------------------------SIKPNDFTLSCALVACARLAA 628

Query: 201 LKLTRQVHGQVLVTGFLSNVV--ISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMV 258
           L+  RQVH  VL   F  +V+  +++ ++D Y+K G++  A+ +FD    R+ ++WT+++
Sbjct: 629 LRFGRQVHAYVL-RNFYGSVMLFVANCLIDMYSKSGDVDTAQIVFDNMPQRNAVSWTSLM 687

Query: 259 SGYAKLGDMESASKLFNEMPE----KNPVSWTTLIAGYTRNGLGQKALELFTRM 308
           +GY   G  E A ++F+EM +     + +++  ++   + +G+    +  F RM
Sbjct: 688 TGYGMHGRGEDALRVFDEMRKVPLVPDGITFLVVLYACSHSGMVDHGINFFNRM 741



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 72/299 (24%), Positives = 134/299 (44%), Gaps = 11/299 (3%)

Query: 227 VDAYAKCGELSDARRLFDETDARDVL--TWTTMVSGYAKLGDMESASKLFNEMPEKNPVS 284
           + A  +C  L+ A+ L  ++  + +L    T ++  Y        A  L   +P  +P S
Sbjct: 165 ITALKECNSLAHAKLLHQQSIMQGLLFHLATNLIGTYIASNSTAYAILLLERLPP-SPSS 223

Query: 285 ---WTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHG 341
              W  LI      G  +    L+ +M  L   P+ +TF     ACA++ SL  G  +H 
Sbjct: 224 VFWWNQLIRRALHLGSPRDVFTLYRQMKSLGWTPDHYTFPFVFKACANLSSLSLGASLHA 283

Query: 342 FLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNK--ENSMLWNTMISALTQHGY 399
            + R+ F SN  V ++++ MY KCG L     +FD   ++  ++ + WN+++SA      
Sbjct: 284 TVSRSGFASNVFVCNAVVSMYGKCGALRHAHNMFDDLCHRGIQDLVSWNSVVSAYMWASD 343

Query: 400 DEQAIRLFHDM-VRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHH 458
              A+ LFH M  R  + PD I+L  IL AC        G       +   G++ +    
Sbjct: 344 ANTALALFHKMTTRHLMSPDVISLVNILPACASLAASLRGRQ-VHGFSIRSGLVDDVFVG 402

Query: 459 ACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQN 517
             ++++ A+ G  ++     ++M ++ D   WNA+       G ++    + +++ ++N
Sbjct: 403 NAVVDMYAKCGKMEEANKVFQRMKFK-DVVSWNAMVTGYSQAGRLEHALSLFERMTEEN 460


>gi|297598748|ref|NP_001046155.2| Os02g0191200 [Oryza sativa Japonica Group]
 gi|46390971|dbj|BAD16484.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|50726401|dbj|BAD34012.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|255670678|dbj|BAF08069.2| Os02g0191200 [Oryza sativa Japonica Group]
          Length = 744

 Score =  299 bits (766), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 163/552 (29%), Positives = 295/552 (53%), Gaps = 5/552 (0%)

Query: 47  GIRLPAETLAFILQ---QCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGS 103
           G+R    T  F+ +     +   SL L   +H     T   +   F+SN LI MY + G 
Sbjct: 98  GVRPDGFTFHFLFKCSSSSSRPHSLLLCTMLHAACLRTMLPSAAPFVSNSLIHMYIRLGL 157

Query: 104 DVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKS 163
             DAR+ FD+I VK+  ++  ++SG A +GM+   + L      RDV+SW ++I  Y+++
Sbjct: 158 AADARRAFDEIHVKDAVAWTMLISGLAKMGMLCDTQLLLSQAPVRDVISWTSLIAAYSRA 217

Query: 164 GAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVIS 223
               E +  +K +    I+ +E +   +L+ C KL++L+L R +H  V   G  ++  + 
Sbjct: 218 NRAREAVGCFKTMLSHGIAPDEVTVIAVLSACAKLKDLELGRSLHLLVEEKGMPTSENLV 277

Query: 224 SSIVDAYAKCGELSDARRLFDETD-ARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNP 282
            +++D YAKCG+   A+++FD         +W  ++ GY K G ++ A  LF+EM  ++ 
Sbjct: 278 VALIDMYAKCGDFGHAQQVFDALGRGPRPQSWNAIIDGYCKHGHVDVARSLFDEMEVRDI 337

Query: 283 VSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGF 342
           +++ +++ GY  +G  ++AL LF  M    +R +  T  + L ACAS+ +L+ G+ +H  
Sbjct: 338 ITFNSMMTGYIHSGQLREALLLFMSMRRHDLRVDNFTVVNLLTACASLGALQQGRALHAC 397

Query: 343 LIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQ 402
           + +    ++  + ++L+DMY KCG +++   VF     K +   W  MI+ L  +G  + 
Sbjct: 398 IEQRLVEADIYLGTALLDMYMKCGRVDEATIVFQRM-GKRDVHTWTAMIAGLAFNGMGKA 456

Query: 403 AIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLI 462
           A+  F+ M     +P+ ++   +L AC+HS L+ EG  YF+ M     I P  EH+ C+I
Sbjct: 457 ALEHFYQMRCDGFQPNSVSYIAVLTACSHSCLLNEGRLYFDEMRILYNIHPQIEHYGCMI 516

Query: 463 ELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSA 522
           +LL ++G  D+ M+ ++ MP + ++ +W ++   CR+H +ID+ +   + L+   P    
Sbjct: 517 DLLGRSGLLDEAMDLVKTMPIQPNAVIWASILSACRVHKHIDLAQCAAEHLLKLEPDEDG 576

Query: 523 THGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDV 582
            +  L +IY    +     K+R L+ ERQ KK    S I +  +VH F VSD  HP    
Sbjct: 577 VYVQLYNIYIDSRQWENASKIRMLMEERQVKKTAGYSSITVAGQVHKFVVSDKSHPRILE 636

Query: 583 LYSVLEQLAGQM 594
           + ++LE+++ ++
Sbjct: 637 IIAMLEEISHRL 648



 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 109/392 (27%), Positives = 184/392 (46%), Gaps = 44/392 (11%)

Query: 21  IQSFLSLISK----GQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHL 76
           + S+ SLI+      +  EA+     +   GI     T+  +L  CA+ K L+LG+   L
Sbjct: 204 VISWTSLIAAYSRANRAREAVGCFKTMLSHGIAPDEVTVIAVLSACAKLKDLELGRS--L 261

Query: 77  HLKLTQRKTPTTF-LSNHLISMYFKCGSDVDARKVFDKI---PVKNLFSYNNMLSGYANL 132
           HL + ++  PT+  L   LI MY KCG    A++VFD +   P     S+N ++ GY   
Sbjct: 262 HLLVEEKGMPTSENLVVALIDMYAKCGDFGHAQQVFDALGRGPRPQ--SWNAIIDGYCKH 319

Query: 133 GMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGIL 192
           G +  AR+LFD M  RD++++N+M+ GY  SG + E L  +  +RR  +  + F+   +L
Sbjct: 320 GHVDVARSLFDEMEVRDIITFNSMMTGYIHSGQLREALLLFMSMRRHDLRVDNFTVVNLL 379

Query: 193 TICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVL 252
           T C  L  L+  R +H  +      +++ + ++++D Y KCG + +A  +F     RDV 
Sbjct: 380 TACASLGALQQGRALHACIEQRLVEADIYLGTALLDMYMKCGRVDEATIVFQRMGKRDVH 439

Query: 253 TWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILR 312
           TWT M                               IAG   NG+G+ ALE F +M    
Sbjct: 440 TWTAM-------------------------------IAGLAFNGMGKAALEHFYQMRCDG 468

Query: 313 IRPNQHTFSSCLCACASIVSLKHGKQVHGFL-IRTNFRSNTIVMSSLIDMYSKCGCLNDG 371
            +PN  ++ + L AC+    L  G+     + I  N          +ID+  + G L++ 
Sbjct: 469 FQPNSVSYIAVLTACSHSCLLNEGRLYFDEMRILYNIHPQIEHYGCMIDLLGRSGLLDEA 528

Query: 372 RQVFDLTDNKENSMLWNTMISALTQHGYDEQA 403
             +      + N+++W +++SA   H + + A
Sbjct: 529 MDLVKTMPIQPNAVIWASILSACRVHKHIDLA 560



 Score = 68.6 bits (166), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 68/285 (23%), Positives = 120/285 (42%), Gaps = 43/285 (15%)

Query: 267 MESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFS---SC 323
           +  A  LF+ MP    +  T L A         +   LF RM    +RP+  TF     C
Sbjct: 53  LRYALHLFDRMPPSTFLFDTALRACSRAGSDPHRPFLLFRRMRRAGVRPDGFTFHFLFKC 112

Query: 324 LCACASIVSLKHGKQVHGFLIRTNFRSNT-IVMSSLIDMYSKCGCLNDGRQVFD---LTD 379
             + +   SL     +H   +RT   S    V +SLI MY + G   D R+ FD   + D
Sbjct: 113 SSSSSRPHSLLLCTMLHAACLRTMLPSAAPFVSNSLIHMYIRLGLAADARRAFDEIHVKD 172

Query: 380 NKENSML---------------------------WNTMISALTQHGYDEQAIRLFHDMVR 412
               +ML                           W ++I+A ++     +A+  F  M+ 
Sbjct: 173 AVAWTMLISGLAKMGMLCDTQLLLSQAPVRDVISWTSLIAAYSRANRAREAVGCFKTMLS 232

Query: 413 SSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQA---G 469
             + PD++T+  +L+AC     ++ G +    +  + G+  ++     LI++ A+    G
Sbjct: 233 HGIAPDEVTVIAVLSACAKLKDLELGRS-LHLLVEEKGMPTSENLVVALIDMYAKCGDFG 291

Query: 470 CSDQLMNQLEKMPYEHDSYLWNA-LHGVCRIHGNIDMGRKVVDQL 513
            + Q+ + L + P       WNA + G C+ HG++D+ R + D++
Sbjct: 292 HAQQVFDALGRGPRPQS---WNAIIDGYCK-HGHVDVARSLFDEM 332


>gi|125589995|gb|EAZ30345.1| hypothetical protein OsJ_14392 [Oryza sativa Japonica Group]
          Length = 704

 Score =  299 bits (766), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 194/630 (30%), Positives = 309/630 (49%), Gaps = 74/630 (11%)

Query: 30  KGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHL-KLTQRKTPTT 88
           +G++ +A+ +   + +    L   T A  L  CA  + L++G +VH  + K      P  
Sbjct: 45  RGRVRDALGTAARMHRSAAGLDEATYASALGACARGRCLRMGWQVHCQVVKSGSDDFPVV 104

Query: 89  FLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMA-E 147
             S  L+  Y  C     AR +FD +   N   ++ M+       ++  A +L   M   
Sbjct: 105 GAS--LLDFYSSCLDLDAARTLFDTLHANNELLWSPMVVALVRFNLLSDALDLLQRMPPS 162

Query: 148 RDVVSWNTMIIGYAKSGAVEEGLK----FYKVLRRFSISCNEFSFAGILTICVKLEELKL 203
           RD+ +W  +I GYA+ GA E   K    F ++L    +  NEF++  +L  CVK+  L+ 
Sbjct: 163 RDLFAWTAIISGYAR-GANEYCCKSLELFVQLLAEDGVMPNEFTYDSVLRACVKMGALEF 221

Query: 204 TRQVHG---------------------------------------------QVLVTGFLS 218
            R +HG                                               L+ GF+S
Sbjct: 222 GRSIHGCLIQSGFESEQLITSALVDLYCRSGAVDDAVMVYNGLQMPSLITSNTLIAGFIS 281

Query: 219 -------NVVISSS----------IVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGY 261
                   +V S            ++ AYA  G L D RR+F+    R+++T  +M+S  
Sbjct: 282 MGRTEDAKLVFSQMTEHDSGSYNLMIKAYADEGRLEDCRRMFEMMPRRNMVTLNSMMSVL 341

Query: 262 AKLGDMESASKLFNEMP-EKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTF 320
            + G +E   KLF ++  E+N V+W ++I+GY +N    +AL+LF  M  L I  +  TF
Sbjct: 342 LQNGKLEEGRKLFEQIKDERNTVTWNSMISGYVQNDQSSEALKLFAVMCRLSIECSASTF 401

Query: 321 SSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDN 380
            + L ACA+I +++ GK VH  L +T F SN  V ++L+DMYSKCGC++D R  F    +
Sbjct: 402 PALLHACATIGTIEQGKMVHALLCKTPFESNGYVGTALVDMYSKCGCVSDARAAFSCIMS 461

Query: 381 KENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLT 440
             N   W ++I+ L Q+G+  +AI  F  M++++VKP++IT   IL A   +GLV +G+ 
Sbjct: 462 P-NVASWTSLINGLAQNGHWMEAIVQFARMLKNNVKPNEITFLGILMASARAGLVNKGMR 520

Query: 441 YFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIH 500
           +F SM    G++P  EH+ C ++LL +A    +    + KMP   D  +W AL   C   
Sbjct: 521 FFHSM-ESYGVVPTVEHYTCAVDLLGRARRVREAEKFISKMPIPADGVVWGALLTACWYT 579

Query: 501 GNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISW 560
            +++MG KV ++L     +  + +  +S+IY+ LGK   V KVR  +     KKE   SW
Sbjct: 580 MDLEMGEKVAEKLFYMGTKHISAYVAMSNIYAKLGKWEDVVKVRTRLRSINAKKEPGCSW 639

Query: 561 IEIENKVHAFSVSDSLHPMRDVLYSVLEQL 590
           IE+++ VH F V D  HP R+ +Y +LE L
Sbjct: 640 IEVKDMVHVFLVEDRNHPEREEIYLMLEDL 669



 Score =  147 bits (371), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 95/347 (27%), Positives = 174/347 (50%), Gaps = 14/347 (4%)

Query: 151 VSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQ 210
           +SWN  +  +A+ G V + L     + R +   +E ++A  L  C +   L++  QVH Q
Sbjct: 33  LSWNATVAAHARRGRVRDALGTAARMHRSAAGLDEATYASALGACARGRCLRMGWQVHCQ 92

Query: 211 VLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESA 270
           V+ +G     V+ +S++D Y+ C +L  AR LFD   A + L W+ MV    +   +  A
Sbjct: 93  VVKSGSDDFPVVGASLLDFYSSCLDLDAARTLFDTLHANNELLWSPMVVALVRFNLLSDA 152

Query: 271 SKLFNEM-PEKNPVSWTTLIAGYTR--NGLGQKALELFTRMMILR-IRPNQHTFSSCLCA 326
             L   M P ++  +WT +I+GY R  N    K+LELF +++    + PN+ T+ S L A
Sbjct: 153 LDLLQRMPPSRDLFAWTAIISGYARGANEYCCKSLELFVQLLAEDGVMPNEFTYDSVLRA 212

Query: 327 CASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSML 386
           C  + +L+ G+ +HG LI++ F S  ++ S+L+D+Y + G ++D   V++      + + 
Sbjct: 213 CVKMGALEFGRSIHGCLIQSGFESEQLITSALVDLYCRSGAVDDAVMVYNGL-QMPSLIT 271

Query: 387 WNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMT 446
            NT+I+     G  E A  +F  M     + D  +  +++ A    G +++    FE M 
Sbjct: 272 SNTLIAGFISMGRTEDAKLVFSQM----TEHDSGSYNLMIKAYADEGRLEDCRRMFEMMP 327

Query: 447 HDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNAL 493
               +  N      ++ +L Q G  ++     E++  E ++  WN++
Sbjct: 328 RRNMVTLNS-----MMSVLLQNGKLEEGRKLFEQIKDERNTVTWNSM 369



 Score = 66.2 bits (160), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 46/177 (25%), Positives = 84/177 (47%), Gaps = 14/177 (7%)

Query: 12  RKNLPNNCLIQSFLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLG 71
           R  +  N +I  +   +   Q SEA+    ++ +  I   A T   +L  CA   +++ G
Sbjct: 361 RNTVTWNSMISGY---VQNDQSSEALKLFAVMCRLSIECSASTFPALLHACATIGTIEQG 417

Query: 72  KRVHLHLKLTQRKTP---TTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSG 128
           K VH  L     KTP     ++   L+ MY KCG   DAR  F  I   N+ S+ ++++G
Sbjct: 418 KMVHALLC----KTPFESNGYVGTALVDMYSKCGCVSDARAAFSCIMSPNVASWTSLING 473

Query: 129 YANLGMMKHARNLFDNMAERDV----VSWNTMIIGYAKSGAVEEGLKFYKVLRRFSI 181
            A  G    A   F  M + +V    +++  +++  A++G V +G++F+  +  + +
Sbjct: 474 LAQNGHWMEAIVQFARMLKNNVKPNEITFLGILMASARAGLVNKGMRFFHSMESYGV 530


>gi|357507475|ref|XP_003624026.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|124360495|gb|ABN08505.1| Tetratricopeptide-like helical [Medicago truncatula]
 gi|355499041|gb|AES80244.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 646

 Score =  299 bits (766), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 160/481 (33%), Positives = 278/481 (57%), Gaps = 16/481 (3%)

Query: 92  NHLISMYFKCGSDVDARKVF----DKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAE 147
           N +IS Y+KCG++ +A  +F    D+   +N+ ++  M++G+A  G +K AR  FD M E
Sbjct: 169 NVMISGYWKCGNEEEASTLFHVMGDQEISRNVITWTTMITGHAKKGNLKTARMYFDKMPE 228

Query: 148 RDVVSWNTMIIGYAKSGAVEEGLK-FYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQ 206
           R VVSWN M+ GYA+ GA EE ++ F  +L   ++  +E ++  +++ C  L +  L+  
Sbjct: 229 RSVVSWNAMLSGYAQGGAPEETIRLFNDMLSPGNVQPDETTWVTVISSCSSLGDPCLSES 288

Query: 207 VHGQVLVT-GFLSNVVISSSIVDAYAKCGELSDARRLFDETDA---RDVLTWTTMVSGYA 262
           +  ++  T GF  N  + ++++D +AKCG L  A ++F++      R  + W  M+S YA
Sbjct: 289 IVRKLDDTVGFRPNYFVKTALLDMHAKCGNLEAAHKIFEQLGVYKYRSSVPWNAMISAYA 348

Query: 263 KLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILR-IRPNQHTFS 321
           ++GD+ SA  LF++MP+++ VSW ++IAGYT+NG   KA++LF  M+     +P++ T  
Sbjct: 349 RVGDLPSARHLFDKMPQRDTVSWNSMIAGYTQNGESVKAIKLFEEMISSEDSKPDEVTMV 408

Query: 322 SCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNK 381
           S   AC  +  L  G      L   + + +  V +SLI MYS+CG + D   +F     +
Sbjct: 409 SVFSACGHLGELGLGNWAVSILKENHIQISISVYNSLISMYSRCGSMQDAVLIFQEMATR 468

Query: 382 ENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTY 441
           +  + +NT+IS   +HG+  ++I L   M    ++PD+IT   IL AC+H+GL+ EG   
Sbjct: 469 D-LVSYNTLISGFAEHGHGMESIELLLKMKEDGIEPDRITYIAILTACSHAGLLGEGQRL 527

Query: 442 FESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHG 501
           FES+       P+ +H+AC+I++L +AG  ++ M  ++ MP E  + ++ +L     IH 
Sbjct: 528 FESIK-----FPDVDHYACMIDMLGRAGRLEEAMKLIQSMPMEPHAGIYGSLLNATSIHK 582

Query: 502 NIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWI 561
            +++G     +L    P +S  + LLS+IY++ G+ +  +KVR  + ++  KK   +SW+
Sbjct: 583 QVELGELAAAKLFKVEPHNSGNYVLLSNIYASAGRWKDGDKVRDTMRKQGVKKTTGLSWL 642

Query: 562 E 562
           E
Sbjct: 643 E 643



 Score =  125 bits (314), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 95/367 (25%), Positives = 167/367 (45%), Gaps = 78/367 (21%)

Query: 140 NLFDNMAERDVVSWNTMIIGYAKSGA-VEEGLKFYK-VLRRFSISCNEFSFAGILTICVK 197
           ++F      DV  +  M+  Y++ G   +  +  +K +LR  +I  N  SF  ++     
Sbjct: 57  HIFHAATHPDVRVFTFMLKYYSQIGVRAQVPVSLFKHMLRHCNIKPNT-SFYSVMMKSAG 115

Query: 198 LEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTM 257
            E +         VL +G+  +  + + I+  YAK G +  AR+LFDE   R V  W  M
Sbjct: 116 SESMLFL----AHVLKSGYDRDHYVRNGILGIYAKYGPIEFARKLFDEMPDRTVADWNVM 171

Query: 258 VSGYAKLGDMESASKL-----------------------------------FNEMPEKNP 282
           +SGY K G+ E AS L                                   F++MPE++ 
Sbjct: 172 ISGYWKCGNEEEASTLFHVMGDQEISRNVITWTTMITGHAKKGNLKTARMYFDKMPERSV 231

Query: 283 VSWTTLIAGYTRNGLGQKALELFTRMMIL-RIRPNQHTFSSCLCACASIVSLKHGKQVHG 341
           VSW  +++GY + G  ++ + LF  M+    ++P++ T+ + + +C+S+      + +  
Sbjct: 232 VSWNAMLSGYAQGGAPEETIRLFNDMLSPGNVQPDETTWVTVISSCSSLGDPCLSESIVR 291

Query: 342 FLIRT-NFRSNTIVMSSLIDMYSKCGCLNDGRQVFD------------------------ 376
            L  T  FR N  V ++L+DM++KCG L    ++F+                        
Sbjct: 292 KLDDTVGFRPNYFVKTALLDMHAKCGNLEAAHKIFEQLGVYKYRSSVPWNAMISAYARVG 351

Query: 377 -------LTDN--KENSMLWNTMISALTQHGYDEQAIRLFHDMVRSS-VKPDKITLAVIL 426
                  L D   + +++ WN+MI+  TQ+G   +AI+LF +M+ S   KPD++T+  + 
Sbjct: 352 DLPSARHLFDKMPQRDTVSWNSMIAGYTQNGESVKAIKLFEEMISSEDSKPDEVTMVSVF 411

Query: 427 NACTHSG 433
           +AC H G
Sbjct: 412 SACGHLG 418



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 89/381 (23%), Positives = 178/381 (46%), Gaps = 41/381 (10%)

Query: 23  SFLSLISKGQLSEAISSL--DLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKL 80
           + LS  ++G   E    L  D+L+   ++    T   ++  C+      L + +   L  
Sbjct: 236 AMLSGYAQGGAPEETIRLFNDMLSPGNVQPDETTWVTVISSCSSLGDPCLSESIVRKLDD 295

Query: 81  TQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPV---KNLFSYNNMLSGYANLGMMKH 137
           T    P  F+   L+ M+ KCG+   A K+F+++ V   ++   +N M+S YA +G +  
Sbjct: 296 TVGFRPNYFVKTALLDMHAKCGNLEAAHKIFEQLGVYKYRSSVPWNAMISAYARVGDLPS 355

Query: 138 ARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLK-FYKVLRRFSISCNEFSFAGILTICV 196
           AR+LFD M +RD VSWN+MI GY ++G   + +K F +++       +E +   + + C 
Sbjct: 356 ARHLFDKMPQRDTVSWNSMIAGYTQNGESVKAIKLFEEMISSEDSKPDEVTMVSVFSACG 415

Query: 197 KLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTT 256
            L EL L       +       ++ + +S++  Y++CG + DA  +F E   RD++++ T
Sbjct: 416 HLGELGLGNWAVSILKENHIQISISVYNSLISMYSRCGSMQDAVLIFQEMATRDLVSYNT 475

Query: 257 MVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPN 316
           ++SG+A+                               +G G +++EL  +M    I P+
Sbjct: 476 LISGFAE-------------------------------HGHGMESIELLLKMKEDGIEPD 504

Query: 317 QHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFD 376
           + T+ + L AC+    L  G++    L  +    +    + +IDM  + G L +  ++  
Sbjct: 505 RITYIAILTACSHAGLLGEGQR----LFESIKFPDVDHYACMIDMLGRAGRLEEAMKLIQ 560

Query: 377 LTDNKENSMLWNTMISALTQH 397
               + ++ ++ ++++A + H
Sbjct: 561 SMPMEPHAGIYGSLLNATSIH 581



 Score = 52.8 bits (125), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 51/239 (21%), Positives = 103/239 (43%), Gaps = 21/239 (8%)

Query: 285 WTTLIAGYTRNGL-GQKALELFTRMMI-LRIRPNQHTFSSCL--CACASIVSLKHGKQVH 340
           +T ++  Y++ G+  Q  + LF  M+    I+PN   +S  +      S++ L H     
Sbjct: 70  FTFMLKYYSQIGVRAQVPVSLFKHMLRHCNIKPNTSFYSVMMKSAGSESMLFLAH----- 124

Query: 341 GFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYD 400
             ++++ +  +  V + ++ +Y+K G +   R++FD   ++  +  WN MIS   + G +
Sbjct: 125 --VLKSGYDRDHYVRNGILGIYAKYGPIEFARKLFDEMPDRTVAD-WNVMISGYWKCGNE 181

Query: 401 EQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHAC 460
           E+A  LFH M    +  + IT   ++      G ++    YF+ M     +  N      
Sbjct: 182 EEASTLFHVMGDQEISRNVITWTTMITGHAKKGNLKTARMYFDKMPERSVVSWN-----A 236

Query: 461 LIELLAQAGCSDQLMNQLEKM----PYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLID 515
           ++   AQ G  ++ +     M      + D   W  +   C   G+  +   +V +L D
Sbjct: 237 MLSGYAQGGAPEETIRLFNDMLSPGNVQPDETTWVTVISSCSSLGDPCLSESIVRKLDD 295


>gi|356510733|ref|XP_003524089.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62260,
           mitochondrial-like [Glycine max]
          Length = 649

 Score =  299 bits (766), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 198/636 (31%), Positives = 310/636 (48%), Gaps = 97/636 (15%)

Query: 4   NFSPRGINRKNLPNNCLIQSFLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCA 63
           N SP   + K L N         LI  G++SEA +  D + +R      +T+ +      
Sbjct: 34  NSSPLNQSNKKLSN---------LIRSGRISEARTLFDSMKRR------DTVTWNSMISG 78

Query: 64  ESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKC-GSDV--DARKVFDKIPVKNLF 120
             +  ++ +   L  ++ +R   +    N ++S YF C GS    + R++F+ +P ++  
Sbjct: 79  YVQRREIARARQLFDEMPRRDVVSW---NLIVSGYFSCCGSRFVEEGRRLFELMPQRDCV 135

Query: 121 SYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFS 180
           S+N ++SGYA  G M  A  LF+ M E + VS+N +I G+  +G VE  + F++ +    
Sbjct: 136 SWNTVISGYAKNGRMDQALKLFNAMPEHNAVSYNAVITGFLLNGDVESAVGFFRTMPEHD 195

Query: 181 IS--CNEFS----------FAGILTICVKLEELKLTRQVHG-QVLVTG------------ 215
            +  C   S           AGIL  C   ++ K    VH    L+ G            
Sbjct: 196 STSLCALISGLVRNGELDLAAGILRECGNGDDGK-DDLVHAYNTLIAGYGQRGHVEEARR 254

Query: 216 ------------------FLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTM 257
                             F  NVV  +S++  Y K G++  AR LFD    RD  +W T+
Sbjct: 255 LFDVIPDDDDDGNEGKRRFRRNVVSWNSMMMCYVKAGDIVFARELFDRMVERDNCSWNTL 314

Query: 258 VSGYAKLGDMESASKLFNEMPE-------------------------------KNPVSWT 286
           +S Y ++ +ME ASKLF EMP                                KN +SW 
Sbjct: 315 ISCYVQISNMEEASKLFREMPSPDVLSWNSIISGLAQKGDLNLAKDFFERMPHKNLISWN 374

Query: 287 TLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRT 346
           T+IAGY +N   + A++LF+ M +   RP++HT SS +     +V L  GKQ+H  + +T
Sbjct: 375 TIIAGYEKNEDYKGAIKLFSEMQLEGERPDKHTLSSVISVSTGLVDLYLGKQLHQLVTKT 434

Query: 347 NFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRL 406
               ++ + +SLI MYS+CG + D   VF+     ++ + WN MI     HG   +A+ L
Sbjct: 435 VL-PDSPINNSLITMYSRCGAIVDACTVFNEIKLYKDVITWNAMIGGYASHGSAAEALEL 493

Query: 407 FHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLA 466
           F  M R  + P  IT   +LNAC H+GLV+EG   F+SM +D GI P  EH A L+++L 
Sbjct: 494 FKLMKRLKIHPTYITFISVLNACAHAGLVEEGWRQFKSMINDYGIEPRVEHFASLVDILG 553

Query: 467 QAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGL 526
           + G   + M+ +  MP++ D  +W AL G CR+H N+++     D LI   P+SSA + L
Sbjct: 554 RQGQLQEAMDLINTMPFKPDKAVWGALLGACRVHNNVELALVAADALIRLEPESSAPYVL 613

Query: 527 LSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIE 562
           L ++Y+ LG+    E VR L+ E+  KK+   SW++
Sbjct: 614 LYNMYANLGQWDDAESVRVLMEEKNVKKQAGYSWVD 649


>gi|449438556|ref|XP_004137054.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g16860-like [Cucumis sativus]
 gi|449479088|ref|XP_004155501.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g16860-like [Cucumis sativus]
          Length = 855

 Score =  299 bits (766), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 174/557 (31%), Positives = 284/557 (50%), Gaps = 45/557 (8%)

Query: 48  IRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDA 107
           +R  A TL  IL  CA   +L+ GK+VH    +        F+ N L+SMY KC    +A
Sbjct: 230 LRPDAITLVNILPACASVFALQHGKQVH-GFSVRNGLVDDVFVGNALVSMYAKCSKMNEA 288

Query: 108 RKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERD----VVSWNTMIIGYAKS 163
            KVF+ I  K++ S+N M++GY+ +G    A +LF  M E D    V++W+ +I GYA+ 
Sbjct: 289 NKVFEGIKKKDVVSWNAMVTGYSQIGSFDSALSLFKMMQEEDIKLDVITWSAVIAGYAQK 348

Query: 164 GAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSN---- 219
           G   E L  ++ ++ + +  N  + A +L+ C  +  L   +Q H  V+      N    
Sbjct: 349 GHGFEALDVFRQMQLYGLEPNVVTLASLLSGCASVGALLYGKQTHAYVIKNILNLNWNDK 408

Query: 220 ---VVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNE 276
              +++ + ++D YAKC     AR +FD  + +D                          
Sbjct: 409 EDDLLVLNGLIDMYAKCKSYRVARSIFDSIEGKD-------------------------- 442

Query: 277 MPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILR--IRPNQHTFSSCLCACASIVSLK 334
              KN V+WT +I GY ++G    AL+LF ++   +  ++PN  T S  L ACA +  L+
Sbjct: 443 ---KNVVTWTVMIGGYAQHGEANDALKLFAQIFKQKTSLKPNAFTLSCALMACARLGELR 499

Query: 335 HGKQVHGFLIRTNFRSNTI-VMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISA 393
            G+Q+H + +R    S  + V + LIDMYSK G ++  R VFD      N + W ++++ 
Sbjct: 500 LGRQLHAYALRNENESEVLYVGNCLIDMYSKSGDIDAARAVFD-NMKLRNVVSWTSLMTG 558

Query: 394 LTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIP 453
              HG  E+A+ LF  M +     D IT  V+L AC+HSG+V +G+ YF  M    GI P
Sbjct: 559 YGMHGRGEEALHLFDQMQKLGFAVDGITFLVVLYACSHSGMVDQGMIYFHDMVKGFGITP 618

Query: 454 NQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQL 513
             EH+AC+++LL +AG  ++ M  ++ M  E  + +W AL    RIH NI++G     +L
Sbjct: 619 GAEHYACMVDLLGRAGRLNEAMELIKNMSMEPTAVVWVALLSASRIHANIELGEYAASKL 678

Query: 514 IDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVS 573
            +   ++  ++ LLS++Y+   + + V ++R L+     +K    SWI+ +     F V 
Sbjct: 679 TELGAENDGSYTLLSNLYANARRWKDVARIRSLMKHTGIRKRPGCSWIQGKKSTTTFFVG 738

Query: 574 DSLHPMRDVLYSVLEQL 590
           D  HP  + +Y++L  L
Sbjct: 739 DRSHPESEQIYNLLLDL 755



 Score =  214 bits (546), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 136/492 (27%), Positives = 241/492 (48%), Gaps = 58/492 (11%)

Query: 45  QRGIRLPAE-TLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGS 103
           QR   LP   T  F+L+ C E  SL+ G  VH  +          F+ N +++MY +CG+
Sbjct: 119 QRLGWLPDHYTFPFVLKACGEIPSLRHGASVHA-IVCANGLGSNVFICNSIVAMYGRCGA 177

Query: 104 DVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKS 163
             DA ++FD++  + +                             D+VSWN+++  Y + 
Sbjct: 178 LDDAHQMFDEVLERKI----------------------------EDIVSWNSILAAYVQG 209

Query: 164 GAVEEGLKF-YKVLRRFSISC--NEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNV 220
           G     L+  +++   +S+    +  +   IL  C  +  L+  +QVHG  +  G + +V
Sbjct: 210 GQSRTALRIAFRMGNHYSLKLRPDAITLVNILPACASVFALQHGKQVHGFSVRNGLVDDV 269

Query: 221 VISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEK 280
            + +++V  YAKC ++++A ++F+    +DV++W  MV+GY+++G  +SA  LF  M E+
Sbjct: 270 FVGNALVSMYAKCSKMNEANKVFEGIKKKDVVSWNAMVTGYSQIGSFDSALSLFKMMQEE 329

Query: 281 ----NPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHG 336
               + ++W+ +IAGY + G G +AL++F +M +  + PN  T +S L  CAS+ +L +G
Sbjct: 330 DIKLDVITWSAVIAGYAQKGHGFEALDVFRQMQLYGLEPNVVTLASLLSGCASVGALLYG 389

Query: 337 KQVHGFLIRTNFRSN-------TIVMSSLIDMYSKCGCLNDGRQVFDLTDNKE-NSMLWN 388
           KQ H ++I+     N        +V++ LIDMY+KC      R +FD  + K+ N + W 
Sbjct: 390 KQTHAYVIKNILNLNWNDKEDDLLVLNGLIDMYAKCKSYRVARSIFDSIEGKDKNVVTWT 449

Query: 389 TMISALTQHGYDEQAIRLFHDMV--RSSVKPDKITLAVILNACTHSGLVQEGLTYFESMT 446
            MI    QHG    A++LF  +   ++S+KP+  TL+  L AC   G ++ G        
Sbjct: 450 VMIGGYAQHGEANDALKLFAQIFKQKTSLKPNAFTLSCALMACARLGELRLG-----RQL 504

Query: 447 HDLGIIPNQEHHA-----CLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHG 501
           H   +    E        CLI++ +++G  D      + M    +   W +L     +HG
Sbjct: 505 HAYALRNENESEVLYVGNCLIDMYSKSGDIDAARAVFDNMKLR-NVVSWTSLMTGYGMHG 563

Query: 502 NIDMGRKVVDQL 513
             +    + DQ+
Sbjct: 564 RGEEALHLFDQM 575



 Score =  161 bits (407), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 121/423 (28%), Positives = 192/423 (45%), Gaps = 51/423 (12%)

Query: 58  ILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVK 117
           I   C    S  L   VH +   T   +P T     LIS+  +C + ++A+    +I V 
Sbjct: 2   IHHHCGSYLSRILITSVHFYSTFT--TSPPTI---PLISLLRQCKTLINAKLAHQQIFVH 56

Query: 118 N---LFSYNNMLSGYANLGMMKHARNLFDNM--AERDVVSWNTMIIGYAKSGAVEEGLKF 172
               +FSY   +  Y   G    A +L   +  +   V  WN +I    K G +++ L F
Sbjct: 57  GFTEMFSY--AVGAYIECGASAEAVSLLQRLIPSHSTVFWWNALIRRSVKLGLLDDTLGF 114

Query: 173 YKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAK 232
           Y  ++R     + ++F  +L  C ++  L+    VH  V   G  SNV I +SIV  Y +
Sbjct: 115 YCQMQRLGWLPDHYTFPFVLKACGEIPSLRHGASVHAIVCANGLGSNVFICNSIVAMYGR 174

Query: 233 CGELSDARRLFDETDAR---DVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLI 289
           CG L DA ++FDE   R   D+++W                                +++
Sbjct: 175 CGALDDAHQMFDEVLERKIEDIVSW-------------------------------NSIL 203

Query: 290 AGYTRNGLGQKALELFTRM---MILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRT 346
           A Y + G  + AL +  RM     L++RP+  T  + L ACAS+ +L+HGKQVHGF +R 
Sbjct: 204 AAYVQGGQSRTALRIAFRMGNHYSLKLRPDAITLVNILPACASVFALQHGKQVHGFSVRN 263

Query: 347 NFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRL 406
               +  V ++L+ MY+KC  +N+  +VF+    K++ + WN M++  +Q G  + A+ L
Sbjct: 264 GLVDDVFVGNALVSMYAKCSKMNEANKVFEGI-KKKDVVSWNAMVTGYSQIGSFDSALSL 322

Query: 407 FHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLA 466
           F  M    +K D IT + ++      G   E L  F  M    G+ PN    A L+   A
Sbjct: 323 FKMMQEEDIKLDVITWSAVIAGYAQKGHGFEALDVFRQM-QLYGLEPNVVTLASLLSGCA 381

Query: 467 QAG 469
             G
Sbjct: 382 SVG 384



 Score =  102 bits (254), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 96/384 (25%), Positives = 158/384 (41%), Gaps = 80/384 (20%)

Query: 30  KGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVH-------LHLKLTQ 82
           KG   EA+     +   G+     TLA +L  CA   +L  GK+ H       L+L    
Sbjct: 348 KGHGFEALDVFRQMQLYGLEPNVVTLASLLSGCASVGALLYGKQTHAYVIKNILNLNWND 407

Query: 83  RKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPV--KNLFSYNNMLSGYANLGMMKHARN 140
           ++     L N LI MY KC S   AR +FD I    KN+ ++  M+ GYA  G    A  
Sbjct: 408 KEDDLLVL-NGLIDMYAKCKSYRVARSIFDSIEGKDKNVVTWTVMIGGYAQHGEANDALK 466

Query: 141 LFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEE 200
           LF  + +                             ++ S+  N F+ +  L  C +L E
Sbjct: 467 LFAQIFK-----------------------------QKTSLKPNAFTLSCALMACARLGE 497

Query: 201 LKLTRQVHGQVLVTGFLSNVV-ISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVS 259
           L+L RQ+H   L     S V+ + + ++D Y+K G++  AR +FD    R+V++WT++++
Sbjct: 498 LRLGRQLHAYALRNENESEVLYVGNCLIDMYSKSGDIDAARAVFDNMKLRNVVSWTSLMT 557

Query: 260 GYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHT 319
           GY   G  E A  LF++M +           G+  +G+                     T
Sbjct: 558 GYGMHGRGEEALHLFDQMQK----------LGFAVDGI---------------------T 586

Query: 320 FSSCLCACASIVSLKHG-----KQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQV 374
           F   L AC+    +  G       V GF I           + ++D+  + G LN+  ++
Sbjct: 587 FLVVLYACSHSGMVDQGMIYFHDMVKGFGITPGAEH----YACMVDLLGRAGRLNEAMEL 642

Query: 375 FDLTDNKENSMLWNTMISALTQHG 398
                 +  +++W  ++SA   H 
Sbjct: 643 IKNMSMEPTAVVWVALLSASRIHA 666



 Score = 73.2 bits (178), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 63/247 (25%), Positives = 128/247 (51%), Gaps = 20/247 (8%)

Query: 31  GQLSEAISSLDLLAQ-----RGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKT 85
            Q  EA  +L L AQ       ++  A TL+  L  CA    L+LG+++H +    + ++
Sbjct: 456 AQHGEANDALKLFAQIFKQKTSLKPNAFTLSCALMACARLGELRLGRQLHAYALRNENES 515

Query: 86  PTTFLSNHLISMYFKCGSDVD-ARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDN 144
              ++ N LI MY K G D+D AR VFD + ++N+ S+ ++++GY   G  + A +LFD 
Sbjct: 516 EVLYVGNCLIDMYSKSG-DIDAARAVFDNMKLRNVVSWTSLMTGYGMHGRGEEALHLFDQ 574

Query: 145 MAER----DVVSWNTMIIGYAKSGAVEEGL-KFYKVLRRFSISCNEFSFAGILTICVKL- 198
           M +     D +++  ++   + SG V++G+  F+ +++ F I+     +A ++ +  +  
Sbjct: 575 MQKLGFAVDGITFLVVLYACSHSGMVDQGMIYFHDMVKGFGITPGAEHYACMVDLLGRAG 634

Query: 199 ---EELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWT 255
              E ++L + +  +   T  +   ++S+S + A  + GE + ++    E  A +  ++T
Sbjct: 635 RLNEAMELIKNMSME--PTAVVWVALLSASRIHANIELGEYAASK--LTELGAENDGSYT 690

Query: 256 TMVSGYA 262
            + + YA
Sbjct: 691 LLSNLYA 697


>gi|38347497|emb|CAE05845.2| OSJNBa0091C07.7 [Oryza sativa Japonica Group]
          Length = 749

 Score =  299 bits (766), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 194/630 (30%), Positives = 309/630 (49%), Gaps = 74/630 (11%)

Query: 30  KGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHL-KLTQRKTPTT 88
           +G++ +A+ +   + +    L   T A  L  CA  + L++G +VH  + K      P  
Sbjct: 90  RGRVRDALGTAARMHRSAAGLDEATYASALGACARGRCLRMGWQVHCQVVKSGSDDFPVV 149

Query: 89  FLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMA-E 147
             S  L+  Y  C     AR +FD +   N   ++ M+       ++  A +L   M   
Sbjct: 150 GAS--LLDFYSSCLDLDAARTLFDTLHANNELLWSPMVVALVRFNLLSDALDLLQRMPPS 207

Query: 148 RDVVSWNTMIIGYAKSGAVEEGLK----FYKVLRRFSISCNEFSFAGILTICVKLEELKL 203
           RD+ +W  +I GYA+ GA E   K    F ++L    +  NEF++  +L  CVK+  L+ 
Sbjct: 208 RDLFAWTAIISGYAR-GANEYCCKSLELFVQLLAEDGVMPNEFTYDSVLRACVKMGALEF 266

Query: 204 TRQVHG---------------------------------------------QVLVTGFLS 218
            R +HG                                               L+ GF+S
Sbjct: 267 GRSIHGCLIQSGFESEQLITSALVDLYCRSGAVDDAVMVYNGLQMPSLITSNTLIAGFIS 326

Query: 219 -------NVVISSS----------IVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGY 261
                   +V S            ++ AYA  G L D RR+F+    R+++T  +M+S  
Sbjct: 327 MGRTEDAKLVFSQMTEHDSGSYNLMIKAYADEGRLEDCRRMFEMMPRRNMVTLNSMMSVL 386

Query: 262 AKLGDMESASKLFNEMP-EKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTF 320
            + G +E   KLF ++  E+N V+W ++I+GY +N    +AL+LF  M  L I  +  TF
Sbjct: 387 LQNGKLEEGRKLFEQIKDERNTVTWNSMISGYVQNDQSSEALKLFAVMCRLSIECSASTF 446

Query: 321 SSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDN 380
            + L ACA+I +++ GK VH  L +T F SN  V ++L+DMYSKCGC++D R  F    +
Sbjct: 447 PALLHACATIGTIEQGKMVHALLCKTPFESNGYVGTALVDMYSKCGCVSDARAAFSCIMS 506

Query: 381 KENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLT 440
             N   W ++I+ L Q+G+  +AI  F  M++++VKP++IT   IL A   +GLV +G+ 
Sbjct: 507 P-NVASWTSLINGLAQNGHWMEAIVQFARMLKNNVKPNEITFLGILMASARAGLVNKGMR 565

Query: 441 YFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIH 500
           +F SM    G++P  EH+ C ++LL +A    +    + KMP   D  +W AL   C   
Sbjct: 566 FFHSM-ESYGVVPTVEHYTCAVDLLGRARRVREAEKFISKMPIPADGVVWGALLTACWYT 624

Query: 501 GNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISW 560
            +++MG KV ++L     +  + +  +S+IY+ LGK   V KVR  +     KKE   SW
Sbjct: 625 MDLEMGEKVAEKLFYMGTKHISAYVAMSNIYAKLGKWEDVVKVRTRLRSINAKKEPGCSW 684

Query: 561 IEIENKVHAFSVSDSLHPMRDVLYSVLEQL 590
           IE+++ VH F V D  HP R+ +Y +LE L
Sbjct: 685 IEVKDMVHVFLVEDRNHPEREEIYLMLEDL 714



 Score =  159 bits (403), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 101/360 (28%), Positives = 181/360 (50%), Gaps = 14/360 (3%)

Query: 138 ARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVK 197
           AR +FD M  R  +SWN  +  +A+ G V + L     + R +   +E ++A  L  C +
Sbjct: 65  ARGVFDGMRRRAALSWNATVAAHARRGRVRDALGTAARMHRSAAGLDEATYASALGACAR 124

Query: 198 LEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTM 257
              L++  QVH QV+ +G     V+ +S++D Y+ C +L  AR LFD   A + L W+ M
Sbjct: 125 GRCLRMGWQVHCQVVKSGSDDFPVVGASLLDFYSSCLDLDAARTLFDTLHANNELLWSPM 184

Query: 258 VSGYAKLGDMESASKLFNEM-PEKNPVSWTTLIAGYTR--NGLGQKALELFTRMMILR-I 313
           V    +   +  A  L   M P ++  +WT +I+GY R  N    K+LELF +++    +
Sbjct: 185 VVALVRFNLLSDALDLLQRMPPSRDLFAWTAIISGYARGANEYCCKSLELFVQLLAEDGV 244

Query: 314 RPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQ 373
            PN+ T+ S L AC  + +L+ G+ +HG LI++ F S  ++ S+L+D+Y + G ++D   
Sbjct: 245 MPNEFTYDSVLRACVKMGALEFGRSIHGCLIQSGFESEQLITSALVDLYCRSGAVDDAVM 304

Query: 374 VFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSG 433
           V++      + +  NT+I+     G  E A  +F  M     + D  +  +++ A    G
Sbjct: 305 VYNGL-QMPSLITSNTLIAGFISMGRTEDAKLVFSQM----TEHDSGSYNLMIKAYADEG 359

Query: 434 LVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNAL 493
            +++    FE M     +  N      ++ +L Q G  ++     E++  E ++  WN++
Sbjct: 360 RLEDCRRMFEMMPRRNMVTLNS-----MMSVLLQNGKLEEGRKLFEQIKDERNTVTWNSM 414



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 78/322 (24%), Positives = 132/322 (40%), Gaps = 51/322 (15%)

Query: 269 SASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACA 328
           +A  +F+ M  +  +SW   +A + R G  + AL    RM       ++ T++S L ACA
Sbjct: 64  AARGVFDGMRRRAALSWNATVAAHARRGRVRDALGTAARMHRSAAGLDEATYASALGACA 123

Query: 329 SIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWN 388
               L+ G QVH  ++++      +V +SL+D YS C  L+  R +FD T +  N +LW+
Sbjct: 124 RGRCLRMGWQVHCQVVKSGSDDFPVVGASLLDFYSSCLDLDAARTLFD-TLHANNELLWS 182

Query: 389 TMISALTQHGYDEQAIRLFHDMVRS----------------------------------- 413
            M+ AL +      A+ L   M  S                                   
Sbjct: 183 PMVVALVRFNLLSDALDLLQRMPPSRDLFAWTAIISGYARGANEYCCKSLELFVQLLAED 242

Query: 414 SVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQ 473
            V P++ T   +L AC   G ++ G +    +    G    Q   + L++L  ++G  D 
Sbjct: 243 GVMPNEFTYDSVLRACVKMGALEFGRSIHGCLIQS-GFESEQLITSALVDLYCRSGAVDD 301

Query: 474 ---LMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLI--DQNPQSSATHGLLS 528
              + N L+ MP    S   N L     I G I MGR    +L+        S ++ L+ 
Sbjct: 302 AVMVYNGLQ-MPSLITS---NTL-----IAGFISMGRTEDAKLVFSQMTEHDSGSYNLMI 352

Query: 529 SIYSALGKGRLVEKVRQLINER 550
             Y+  G+     ++ +++  R
Sbjct: 353 KAYADEGRLEDCRRMFEMMPRR 374



 Score = 65.9 bits (159), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 63/268 (23%), Positives = 112/268 (41%), Gaps = 51/268 (19%)

Query: 12  RKNLPNNCLIQSFLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLG 71
           R  +  N +I  +   +   Q SEA+    ++ +  I   A T   +L  CA   +++ G
Sbjct: 406 RNTVTWNSMISGY---VQNDQSSEALKLFAVMCRLSIECSASTFPALLHACATIGTIEQG 462

Query: 72  KRVHLHLKLTQRKTP---TTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSG 128
           K VH  L     KTP     ++   L+ MY KCG   DAR  F  I   N+ S+ ++++G
Sbjct: 463 KMVHALLC----KTPFESNGYVGTALVDMYSKCGCVSDARAAFSCIMSPNVASWTSLING 518

Query: 129 YANLGMMKHARNLFDNMAERDV----VSWNTMIIGYAKSGAVEEGLKFY----------- 173
            A  G    A   F  M + +V    +++  +++  A++G V +G++F+           
Sbjct: 519 LAQNGHWMEAIVQFARMLKNNVKPNEITFLGILMASARAGLVNKGMRFFHSMESYGVVPT 578

Query: 174 ---------------------KVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVL 212
                                K + +  I  +   +  +LT C    +L++  +V  ++ 
Sbjct: 579 VEHYTCAVDLLGRARRVREAEKFISKMPIPADGVVWGALLTACWYTMDLEMGEKVAEKLF 638

Query: 213 VTG--FLSNVVISSSIVDAYAKCGELSD 238
             G   +S  V  S+I   YAK G+  D
Sbjct: 639 YMGTKHISAYVAMSNI---YAKLGKWED 663


>gi|449494221|ref|XP_004159483.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g04780-like [Cucumis sativus]
          Length = 638

 Score =  299 bits (766), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 178/537 (33%), Positives = 278/537 (51%), Gaps = 64/537 (11%)

Query: 58  ILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVK 117
           IL+ CA+ K L  GK  H  + L   KT     SN LI+MY KCGS VD           
Sbjct: 70  ILKLCAKRKLLLQGKACHAQILLMGLKTDL-LTSNILINMYSKCGS-VD----------- 116

Query: 118 NLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLR 177
                               AR +FD M  R +VSWNTMI    ++G   E L     ++
Sbjct: 117 -------------------FARQVFDEMPSRSLVSWNTMIGSLTQNGEENEALDLLLQMQ 157

Query: 178 RFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELS 237
           R     +EF+ + +L  C     L   + +H   +      NV ++++++D YAKCG + 
Sbjct: 158 REGTPFSEFTISSVLCACAAKCALSECQLLHAFAIKAAMDLNVFVATALLDVYAKCGLMK 217

Query: 238 DARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGL 297
           DA  +F+    R V+TW++M +GY +           NEM E                  
Sbjct: 218 DAVCVFESMPDRSVVTWSSMAAGYVQ-----------NEMYE------------------ 248

Query: 298 GQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSS 357
             +AL LF +     ++ +Q   SS +CACA + ++  GKQV+  L ++ F SN  V SS
Sbjct: 249 --QALALFRKAWETGLKHDQFLMSSVICACAGLAAMIEGKQVNALLSKSGFCSNIFVASS 306

Query: 358 LIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKP 417
           LIDMY+KCG + +  +VF   + K N +LWN MIS L++H    + + LF  M +  + P
Sbjct: 307 LIDMYAKCGGIEESYKVFRDVE-KRNVVLWNAMISGLSRHARSLEVMILFEKMQQMGLSP 365

Query: 418 DKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQ 477
           + +T   +L+AC H GLV++G  YF+ MT +  + PN  H++C+++ L++AG   +  + 
Sbjct: 366 NDVTFVSVLSACGHMGLVKKGQKYFDLMTKEHHLAPNVFHYSCMVDTLSRAGQIFEAYDL 425

Query: 478 LEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKG 537
           + K+P+   + +W +L   CR HGN+++      +L D  P +S  + LLS++Y+A GK 
Sbjct: 426 ISKLPFNASASMWGSLLASCRTHGNLELAEVAAKKLFDIEPHNSGNYLLLSNMYAANGKW 485

Query: 538 RLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQM 594
             V K+R+L+ E   KKE+  SWIEI++KVH F V +  HP    +YS L ++  ++
Sbjct: 486 DEVAKMRKLLKESDVKKERGKSWIEIKDKVHLFMVGERNHPKIVEIYSKLNEVMDEL 542


>gi|22328607|ref|NP_193141.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635650|sp|O23266.3|PP308_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g14050, mitochondrial; Flags: Precursor
 gi|332657965|gb|AEE83365.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 612

 Score =  299 bits (766), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 166/539 (30%), Positives = 291/539 (53%), Gaps = 36/539 (6%)

Query: 59  LQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKN 118
           LQ CA +++L   K +H H+ +         L+N L+++Y KCG+               
Sbjct: 10  LQLCARNRTLTTAKALHAHI-VKLGIVQCCPLANTLVNVYGKCGA--------------- 53

Query: 119 LFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRR 178
                             HA  +FD M  RD ++W +++    ++    + L  +  +  
Sbjct: 54  ----------------ASHALQVFDEMPHRDHIAWASVLTALNQANLSGKTLSVFSSVGS 97

Query: 179 FS-ISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELS 237
            S +  ++F F+ ++  C  L  +   RQVH   +V+ + ++ V+ SS+VD YAKCG L+
Sbjct: 98  SSGLRPDDFVFSALVKACANLGSIDHGRQVHCHFIVSEYANDEVVKSSLVDMYAKCGLLN 157

Query: 238 DARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGL 297
            A+ +FD    ++ ++WT MVSGYAK G  E A +LF  +P KN  SWT LI+G+ ++G 
Sbjct: 158 SAKAVFDSIRVKNTISWTAMVSGYAKSGRKEEALELFRILPVKNLYSWTALISGFVQSGK 217

Query: 298 GQKALELFTRMMILRIRP-NQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMS 356
           G +A  +FT M   R+   +    SS + ACA++ +   G+QVHG +I   F S   + +
Sbjct: 218 GLEAFSVFTEMRRERVDILDPLVLSSIVGACANLAASIAGRQVHGLVIALGFDSCVFISN 277

Query: 357 SLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVK 416
           +LIDMY+KC  +   + +F    ++ + + W ++I  + QHG  E+A+ L+ DMV   VK
Sbjct: 278 ALIDMYAKCSDVIAAKDIFSRMRHR-DVVSWTSLIVGMAQHGQAEKALALYDDMVSHGVK 336

Query: 417 PDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMN 476
           P+++T   ++ AC+H G V++G   F+SMT D GI P+ +H+ CL++LL ++G  D+  N
Sbjct: 337 PNEVTFVGLIYACSHVGFVEKGRELFQSMTKDYGIRPSLQHYTCLLDLLGRSGLLDEAEN 396

Query: 477 QLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQ-NPQSSATHGLLSSIYSALG 535
            +  MP+  D   W AL   C+  G   MG ++ D L+     +  +T+ LLS+IY++  
Sbjct: 397 LIHTMPFPPDEPTWAALLSACKRQGRGQMGIRIADHLVSSFKLKDPSTYILLSNIYASAS 456

Query: 536 KGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQM 594
               V + R+ + E + +K+   S +E+  +   F   ++ HP+++ ++ +L++L  +M
Sbjct: 457 LWGKVSEARRKLGEMEVRKDPGHSSVEVRKETEVFYAGETSHPLKEDIFRLLKKLEEEM 515



 Score =  155 bits (391), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 106/376 (28%), Positives = 174/376 (46%), Gaps = 42/376 (11%)

Query: 58  ILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVK 117
           +++ CA   S+  G++VH H  +++        S+ L+ MY KCG    A+ VFD I VK
Sbjct: 111 LVKACANLGSIDHGRQVHCHFIVSEYANDEVVKSS-LVDMYAKCGLLNSAKAVFDSIRVK 169

Query: 118 NLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLR 177
           N  S+  M+SGYA  G  + A  LF  +  +++ SW  +I G+ +SG   E    +  +R
Sbjct: 170 NTISWTAMVSGYAKSGRKEEALELFRILPVKNLYSWTALISGFVQSGKGLEAFSVFTEMR 229

Query: 178 RFSISC-NEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGEL 236
           R  +   +    + I+  C  L      RQVHG V+  GF S V IS++++D YAKC ++
Sbjct: 230 RERVDILDPLVLSSIVGACANLAASIAGRQVHGLVIALGFDSCVFISNALIDMYAKCSDV 289

Query: 237 SDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEM----PEKNPVSWTTLIAGY 292
             A+ +F     RDV++WT+++ G A+ G  E A  L+++M     + N V++  LI   
Sbjct: 290 IAAKDIFSRMRHRDVVSWTSLIVGMAQHGQAEKALALYDDMVSHGVKPNEVTFVGLIYAC 349

Query: 293 TRNGLGQKALELFTRMMI-LRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSN 351
           +  G  +K  ELF  M     IRP                SL+H                
Sbjct: 350 SHVGFVEKGRELFQSMTKDYGIRP----------------SLQH---------------- 377

Query: 352 TIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMV 411
               + L+D+  + G L++   +        +   W  ++SA  + G  +  IR+   +V
Sbjct: 378 ---YTCLLDLLGRSGLLDEAENLIHTMPFPPDEPTWAALLSACKRQGRGQMGIRIADHLV 434

Query: 412 RSSVKPDKITLAVILN 427
            S    D  T  ++ N
Sbjct: 435 SSFKLKDPSTYILLSN 450


>gi|296081733|emb|CBI20738.3| unnamed protein product [Vitis vinifera]
          Length = 865

 Score =  299 bits (765), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 176/594 (29%), Positives = 298/594 (50%), Gaps = 74/594 (12%)

Query: 18  NCLIQSFLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQC--AESKSLKLGKRVH 75
           N +++ ++ L   G   EA        + G+R    ++  IL  C  A +  L+LGK+VH
Sbjct: 253 NMMLKGYVQL---GLEKEAFQLFSEFHRSGLRPDEFSVQLILNGCLWAGTDDLELGKQVH 309

Query: 76  LHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMM 135
                                +  K G D D                N++++ Y+ +G  
Sbjct: 310 --------------------GIAVKSGLDSDVSVA------------NSLVNMYSKMGCA 337

Query: 136 KHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGIL--- 192
             AR +F++M   D++SWN+MI   A+S   EE +  +  L    +  + F+ A I    
Sbjct: 338 YFAREVFNDMKHLDLISWNSMISSCAQSSLEEESVNLFIDLLHEGLKPDHFTLASITLAT 397

Query: 193 --TICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARD 250
               C  L  L   +Q+H   +  GF S++ ++S I+D Y KCG                
Sbjct: 398 AAKACGCLVLLDQGKQIHAHAIKAGFDSDLHVNSGILDMYIKCG---------------- 441

Query: 251 VLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMI 310
                          DM +A  +FN +   + V+WT++I+G   NG   +AL ++ RM  
Sbjct: 442 ---------------DMVNAGIVFNYISAPDDVAWTSMISGCVDNGNEDQALRIYHRMRQ 486

Query: 311 LRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLND 370
            R+ P+++TF++ + A + + +L+ G+Q+H  +I+ +  S+  V +SL+DMY+KCG + D
Sbjct: 487 SRVMPDEYTFATLIKASSCVTALEQGRQLHANVIKLDCVSDPFVGTSLVDMYAKCGNIED 546

Query: 371 GRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACT 430
             ++F    N  N  LWN M+  L QHG  E+A+ LF  M    ++PD+++   IL+AC+
Sbjct: 547 AYRLFKKM-NVRNIALWNAMLVGLAQHGNAEEAVNLFKSMKSHGIEPDRVSFIGILSACS 605

Query: 431 HSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLW 490
           H+GL  E   Y  SM +D GI P  EH++CL++ L +AG   +    +E MP++  + + 
Sbjct: 606 HAGLTSEAYEYLHSMPNDYGIEPEIEHYSCLVDALGRAGLVQEADKVIETMPFKASASIN 665

Query: 491 NALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINER 550
            AL G CRI G+++ G++V  +L    P  SA + LLS+IY+A  +   V   R+++  +
Sbjct: 666 RALLGACRIQGDVETGKRVAARLFALEPFDSAAYVLLSNIYAAANRWDDVTDARKMMKRK 725

Query: 551 QFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQMGEDAPSLDAD 604
             KK+   SWI+++N +H F V D  HP  D++Y  +E++   + ED    D +
Sbjct: 726 NVKKDPGFSWIDVKNMLHLFVVDDRSHPQADIIYDKVEEMMKTIREDGYVPDTE 779



 Score =  177 bits (449), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 107/314 (34%), Positives = 164/314 (52%), Gaps = 41/314 (13%)

Query: 120 FSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKS-----GAVEEGLKFYK 174
           F  NN+L+ Y+  G +  AR +FD   ERD+V+WN ++  YA S     G  +EGL  ++
Sbjct: 113 FLSNNLLTMYSKCGSLSSARQVFDTTPERDLVTWNAILGAYAASVDSNDGNAQEGLHLFR 172

Query: 175 VLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCG 234
           +LR    S    + A +L +C+    L     VHG  +  G   +V +S ++V+ Y+KCG
Sbjct: 173 LLRASLGSTTRMTLAPVLKLCLNSGCLWAAEGVHGYAIKIGLEWDVFVSGALVNIYSKCG 232

Query: 235 ELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTR 294
            + DAR LFD    RDV+ W  M+ GY +LG  + A +LF+E               + R
Sbjct: 233 RMRDARLLFDWMRERDVVLWNMMLKGYVQLGLEKEAFQLFSE---------------FHR 277

Query: 295 NGLGQKALELFTRMMILRIRPNQHTFSSCLCAC--ASIVSLKHGKQVHGFLIRTNFRSNT 352
           +GL                RP++ +    L  C  A    L+ GKQVHG  +++   S+ 
Sbjct: 278 SGL----------------RPDEFSVQLILNGCLWAGTDDLELGKQVHGIAVKSGLDSDV 321

Query: 353 IVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSML-WNTMISALTQHGYDEQAIRLFHDMV 411
            V +SL++MYSK GC    R+VF+  D K   ++ WN+MIS+  Q   +E+++ LF D++
Sbjct: 322 SVANSLVNMYSKMGCAYFAREVFN--DMKHLDLISWNSMISSCAQSSLEEESVNLFIDLL 379

Query: 412 RSSVKPDKITLAVI 425
              +KPD  TLA I
Sbjct: 380 HEGLKPDHFTLASI 393



 Score =  165 bits (417), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 124/483 (25%), Positives = 225/483 (46%), Gaps = 75/483 (15%)

Query: 118 NLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLR 177
           ++F    +++ Y+  G M+ AR LFD M ERDVV WN M+ GY + G  +E  + +    
Sbjct: 217 DVFVSGALVNIYSKCGRMRDARLLFDWMRERDVVLWNMMLKGYVQLGLEKEAFQLFSEFH 276

Query: 178 RFSISCNEFSFAGILTICV--KLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGE 235
           R  +  +EFS   IL  C+    ++L+L +QVHG  + +G  S+V +++S+V+ Y+K G 
Sbjct: 277 RSGLRPDEFSVQLILNGCLWAGTDDLELGKQVHGIAVKSGLDSDVSVANSLVNMYSKMGC 336

Query: 236 LSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRN 295
              AR +F++    D+++W +M+S  A+                               +
Sbjct: 337 AYFAREVFNDMKHLDLISWNSMISSCAQ-------------------------------S 365

Query: 296 GLGQKALELFTRMMILRIRPNQHTFSSCLC-----ACASIVSLKHGKQVHGFLIRTNFRS 350
            L ++++ LF  ++   ++P+  T +S        AC  +V L  GKQ+H   I+  F S
Sbjct: 366 SLEEESVNLFIDLLHEGLKPDHFTLASITLATAAKACGCLVLLDQGKQIHAHAIKAGFDS 425

Query: 351 NTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDM 410
           +  V S ++DMY KCG + +   VF+     ++ + W +MIS    +G ++QA+R++H M
Sbjct: 426 DLHVNSGILDMYIKCGDMVNAGIVFNYISAPDD-VAWTSMISGCVDNGNEDQALRIYHRM 484

Query: 411 VRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGC 470
            +S V PD+ T A ++ A +    +++G     ++   L  + +      L+++ A+ G 
Sbjct: 485 RQSRVMPDEYTFATLIKASSCVTALEQGRQLHANVI-KLDCVSDPFVGTSLVDMYAKCGN 543

Query: 471 SDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQ----------S 520
            +      +KM   + + LWNA+      HGN +    +   +     +          S
Sbjct: 544 IEDAYRLFKKMNVRNIA-LWNAMLVGLAQHGNAEEAVNLFKSMKSHGIEPDRVSFIGILS 602

Query: 521 SATH-GLLSSIY-----------------------SALGKGRLVEKVRQLINERQFKKEQ 556
           + +H GL S  Y                        ALG+  LV++  ++I    FK   
Sbjct: 603 ACSHAGLTSEAYEYLHSMPNDYGIEPEIEHYSCLVDALGRAGLVQEADKVIETMPFKASA 662

Query: 557 AIS 559
           +I+
Sbjct: 663 SIN 665



 Score =  119 bits (299), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 67/243 (27%), Positives = 120/243 (49%), Gaps = 27/243 (11%)

Query: 191 ILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARD 250
           +L   +    L L +  H +++V+G   +  +S++++  Y+KCG LS AR++FD T  RD
Sbjct: 83  LLRTAISTHNLLLGKCTHARIVVSGSAGDHFLSNNLLTMYSKCGSLSSARQVFDTTPERD 142

Query: 251 VLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMI 310
           ++TW  ++  YA   D                          + +G  Q+ L LF  +  
Sbjct: 143 LVTWNAILGAYAASVD--------------------------SNDGNAQEGLHLFRLLRA 176

Query: 311 LRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLND 370
                 + T +  L  C +   L   + VHG+ I+     +  V  +L+++YSKCG + D
Sbjct: 177 SLGSTTRMTLAPVLKLCLNSGCLWAAEGVHGYAIKIGLEWDVFVSGALVNIYSKCGRMRD 236

Query: 371 GRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACT 430
            R +FD    ++  +LWN M+    Q G +++A +LF +  RS ++PD+ ++ +ILN C 
Sbjct: 237 ARLLFDWMRERD-VVLWNMMLKGYVQLGLEKEAFQLFSEFHRSGLRPDEFSVQLILNGCL 295

Query: 431 HSG 433
            +G
Sbjct: 296 WAG 298


>gi|356506811|ref|XP_003522169.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Glycine max]
          Length = 751

 Score =  299 bits (765), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 175/614 (28%), Positives = 294/614 (47%), Gaps = 104/614 (16%)

Query: 52  AETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVF 111
            +T+A ++Q  A +K L  GK++H  L +     P TFLSNH +++Y KC          
Sbjct: 75  TKTVAHLIQTYARTKELNKGKQLHAML-IRGGCLPNTFLSNHFLNLYSKC---------- 123

Query: 112 DKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLK 171
                                G + +   LFD M++R++VSW ++I G+A +   +E L 
Sbjct: 124 ---------------------GELDYTIKLFDKMSQRNMVSWTSIITGFAHNSRFQEALS 162

Query: 172 FYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGF--------------- 216
            +  +R       +F+ + +L  C  L  ++   QVH  V+  GF               
Sbjct: 163 SFCQMRIEGEIATQFALSSVLQACTSLGAIQFGTQVHCLVVKCGFGCELFVGSNLTDMYS 222

Query: 217 ----------------LSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLT------- 253
                             + V+ +S++D + K G+   A   + +    DV         
Sbjct: 223 KCGELSDACKAFEEMPCKDAVLWTSMIDGFVKNGDFKKALTAYMKMVTDDVFIDQHVLCS 282

Query: 254 ---------------------------WTTMVSG-----YAKLGDMESASKLFNEMPE-K 280
                                      + T +       Y+K GDM SAS +F    +  
Sbjct: 283 TLSACSALKASSFGKSLHATILKLGFEYETFIGNALTDMYSKSGDMVSASNVFQIHSDCI 342

Query: 281 NPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVH 340
           + VS T +I GY      +KAL  F  +    I PN+ TF+S + ACA+   L+HG Q+H
Sbjct: 343 SIVSLTAIIDGYVEMDQIEKALSTFVDLRRRGIEPNEFTFTSLIKACANQAKLEHGSQLH 402

Query: 341 GFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYD 400
           G +++ NF+ +  V S+L+DMY KCG  +   Q+FD  +N +  + WNT++   +QHG  
Sbjct: 403 GQVVKFNFKRDPFVSSTLVDMYGKCGLFDHSIQLFDEIENPDE-IAWNTLVGVFSQHGLG 461

Query: 401 EQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHAC 460
             AI  F+ M+   +KP+ +T   +L  C+H+G+V++GL YF SM    G++P +EH++C
Sbjct: 462 RNAIETFNGMIHRGLKPNAVTFVNLLKGCSHAGMVEDGLNYFSSMEKIYGVVPKEEHYSC 521

Query: 461 LIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQS 520
           +I+LL +AG   +  + +  MP+E + + W +  G C+IHG+++  +   D+L+   P++
Sbjct: 522 VIDLLGRAGKLKEAEDFINNMPFEPNVFGWCSFLGACKIHGDMERAKFAADKLMKLEPEN 581

Query: 521 SATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMR 580
           S  H LLS+IY+   +   V+ +R++I +    K    SW++I NK H F V D  HP +
Sbjct: 582 SGAHVLLSNIYAKEKQWEDVQSLRKMIKDGNMNKLPGYSWVDIRNKTHVFGVEDWSHPQK 641

Query: 581 DVLYSVLEQLAGQM 594
             +Y  L+ L  Q+
Sbjct: 642 KEIYEKLDNLLDQI 655



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 58/258 (22%), Positives = 113/258 (43%), Gaps = 46/258 (17%)

Query: 32  QLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLH-LKLTQRKTPTTFL 90
           Q+ +A+S+   L +RGI     T   +++ CA    L+ G ++H   +K   ++ P  F+
Sbjct: 359 QIEKALSTFVDLRRRGIEPNEFTFTSLIKACANQAKLEHGSQLHGQVVKFNFKRDP--FV 416

Query: 91  SNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAER-- 148
           S+ L+ MY KCG    + ++FD+I   +  ++N ++  ++  G+ ++A   F+ M  R  
Sbjct: 417 SSTLVDMYGKCGLFDHSIQLFDEIENPDEIAWNTLVGVFSQHGLGRNAIETFNGMIHRGL 476

Query: 149 --DVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQ 206
             + V++  ++ G + +G VE+GL ++  + +            I  +  K E       
Sbjct: 477 KPNAVTFVNLLKGCSHAGMVEDGLNYFSSMEK------------IYGVVPKEEHY----- 519

Query: 207 VHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDAR-DVLTWTTMVSGYAKLG 265
                            S ++D   + G+L +A    +      +V  W + +      G
Sbjct: 520 -----------------SCVIDLLGRAGKLKEAEDFINNMPFEPNVFGWCSFLGACKIHG 562

Query: 266 DME----SASKLFNEMPE 279
           DME    +A KL    PE
Sbjct: 563 DMERAKFAADKLMKLEPE 580


>gi|87241257|gb|ABD33115.1| SAM (and some other nucleotide) binding motif; Methyltransferase
           small; Tetratricopeptide-like helical [Medicago
           truncatula]
          Length = 971

 Score =  299 bits (765), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 145/453 (32%), Positives = 258/453 (56%), Gaps = 1/453 (0%)

Query: 118 NLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLR 177
           ++F +N  ++   + G +  A ++F+    RD+V+WN+MI G  K G   E +K YK + 
Sbjct: 192 DIFVHNASITMLLSCGELSVAYDVFNKSRVRDLVTWNSMITGCVKRGLAIEAIKIYKEME 251

Query: 178 RFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELS 237
              +  NE +  G+++ C ++++L L ++ H  +   G    + ++++++D Y KCGEL 
Sbjct: 252 AEKVRPNEITMIGMISSCSQVQDLNLGKEFHCYIKEHGLEFTIPLTNALMDMYVKCGELL 311

Query: 238 DARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGL 297
            AR LFD    + +++WTTMV GYA+ G ++ A ++  ++PEK+ V W  +I+G  +   
Sbjct: 312 TARVLFDNMAQKTLVSWTTMVLGYARFGFLDVAREILYKIPEKSVVPWNAIISGCVQAKQ 371

Query: 298 GQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSS 357
           G++AL LF  M I  I P++ T  +CL AC+ + +L  G  +H ++ R     +  + ++
Sbjct: 372 GKEALALFHEMQIRTIEPDKVTMVNCLSACSQLGALDVGIWIHHYIERHKLSIDVALGTA 431

Query: 358 LIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKP 417
           L+DMY+KCG +    QVF+    + N + W  +I  L  HG  + A+  F  M+   + P
Sbjct: 432 LVDMYAKCGNIARALQVFEEIPQR-NCLTWTAVICGLALHGNAQDALSYFSKMIHIGIVP 490

Query: 418 DKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQ 477
           D+IT   +L+AC H GLV+EG  YF  M+    + P  +H++C+++LL +AG  ++    
Sbjct: 491 DEITFLGVLSACCHGGLVEEGRKYFSEMSSKFNVSPKLKHYSCMVDLLGRAGHLEEAEEL 550

Query: 478 LEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKG 537
           ++ MP   D+ +  AL   CR++GN+ +G +   +L++ +PQ S  + LL+S+YS     
Sbjct: 551 VKNMPMAADAAVLGALFFACRVYGNVQIGERTAFKLLEIDPQDSGNYVLLASMYSEAKMW 610

Query: 538 RLVEKVRQLINERQFKKEQAISWIEIENKVHAF 570
           +     R+L+N++  +K    S +EI   VH F
Sbjct: 611 KEARSARKLMNDKGVEKTPGCSLVEINGIVHEF 643



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 105/415 (25%), Positives = 178/415 (42%), Gaps = 74/415 (17%)

Query: 28  ISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPT 87
           + +G   EAI     +    +R    T+  ++  C++ + L LGK  H ++K       T
Sbjct: 235 VKRGLAIEAIKIYKEMEAEKVRPNEITMIGMISSCSQVQDLNLGKEFHCYIK-EHGLEFT 293

Query: 88  TFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAE 147
             L+N L+ MY KCG  + AR +FD +  K L S+  M+ GYA  G +  AR +   + E
Sbjct: 294 IPLTNALMDMYVKCGELLTARVLFDNMAQKTLVSWTTMVLGYARFGFLDVAREILYKIPE 353

Query: 148 RDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQV 207
           + VV WN +I G  ++   +E L  +  ++  +I  ++ +    L+ C +L  L +   +
Sbjct: 354 KSVVPWNAIISGCVQAKQGKEALALFHEMQIRTIEPDKVTMVNCLSACSQLGALDVGIWI 413

Query: 208 HGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDM 267
           H  +       +V + +++VD YAKCG ++ A ++F+E   R+ LTWT ++ G A  G+ 
Sbjct: 414 HHYIERHKLSIDVALGTALVDMYAKCGNIARALQVFEEIPQRNCLTWTAVICGLALHGN- 472

Query: 268 ESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCAC 327
                                          Q AL  F++M+ + I P++ TF   L AC
Sbjct: 473 ------------------------------AQDALSYFSKMIHIGIVPDEITFLGVLSAC 502

Query: 328 ASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSML- 386
                  HG                             G + +GR+ F    +K N    
Sbjct: 503 C------HG-----------------------------GLVEEGRKYFSEMSSKFNVSPK 527

Query: 387 ---WNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEG 438
              ++ M+  L + G+ E+A  L  +M  ++   D   L  +  AC   G VQ G
Sbjct: 528 LKHYSCMVDLLGRAGHLEEAEELVKNMPMAA---DAAVLGALFFACRVYGNVQIG 579



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 120/504 (23%), Positives = 220/504 (43%), Gaps = 82/504 (16%)

Query: 92  NHLISMYFKCGSDVDARKVFDKIP----VKNLFSYNNMLS--GYANLGMMKHARNLFDNM 145
           N L+S+  +C S V  +++  ++     ++N F+ + +++    +    + +   +   +
Sbjct: 58  NPLLSILERCKSLVQLKQIQAQMVSTGLIENGFAASRLVAFCALSESKELDYCTRILYRI 117

Query: 146 AERDVVSWNTMIIGYAKSGAVEEGLKFYK-VLRRFSISCNEFSFAGILTICVKLEELKLT 204
            E +V SWN  I GY +SG +E G   YK +L   ++  +  ++  +L  C       L 
Sbjct: 118 KELNVFSWNAAIRGYVESGDIEGGFMLYKRMLLGGTLKPDNHTYPLLLKGCCGQYSSCLG 177

Query: 205 RQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKL 264
             V G VL  GF  ++ + ++ +     CGELS A  +F+++  RD++TW +M++G  K 
Sbjct: 178 LGVLGHVLKFGFECDIFVHNASITMLLSCGELSVAYDVFNKSRVRDLVTWNSMITGCVK- 236

Query: 265 GDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCL 324
                                          GL  +A++++  M   ++RPN+ T    +
Sbjct: 237 ------------------------------RGLAIEAIKIYKEMEAEKVRPNEITMIGMI 266

Query: 325 CACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFD-------- 376
            +C+ +  L  GK+ H ++          + ++L+DMY KCG L   R +FD        
Sbjct: 267 SSCSQVQDLNLGKEFHCYIKEHGLEFTIPLTNALMDMYVKCGELLTARVLFDNMAQKTLV 326

Query: 377 ---------------------LTDNKENSML-WNTMISALTQHGYDEQAIRLFHDMVRSS 414
                                L    E S++ WN +IS   Q    ++A+ LFH+M   +
Sbjct: 327 SWTTMVLGYARFGFLDVAREILYKIPEKSVVPWNAIISGCVQAKQGKEALALFHEMQIRT 386

Query: 415 VKPDKITLAVILNACTHSGLVQEGLT---YFESMTHDLGIIPNQEHHACLIELLAQAGCS 471
           ++PDK+T+   L+AC+  G +  G+    Y E   H L I  +      L+++ A+ G  
Sbjct: 387 IEPDKVTMVNCLSACSQLGALDVGIWIHHYIER--HKLSI--DVALGTALVDMYAKCGNI 442

Query: 472 DQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQN--PQSSATHGLLSS 529
            + +   E++P + +   W A+     +HGN         ++I     P      G+L  
Sbjct: 443 ARALQVFEEIP-QRNCLTWTAVICGLALHGNAQDALSYFSKMIHIGIVPDEITFLGVL-- 499

Query: 530 IYSALGKGRLVEKVRQLINERQFK 553
             SA   G LVE+ R+  +E   K
Sbjct: 500 --SACCHGGLVEEGRKYFSEMSSK 521


>gi|255551485|ref|XP_002516788.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223543876|gb|EEF45402.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 710

 Score =  299 bits (765), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 151/468 (32%), Positives = 263/468 (56%), Gaps = 1/468 (0%)

Query: 88  TFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAE 147
             +S +L+ MY  C S V+AR +FD++P KN+ S+N ML+GY+  G +  AR +F+ +  
Sbjct: 233 VLVSTNLLRMYCVCSSLVEARALFDEMPEKNIVSWNVMLNGYSKAGFVDSARVVFERIPN 292

Query: 148 RDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQV 207
           +D+V+W T+I GY +   + E L  Y+ +       N+     +++ C +   +   +Q+
Sbjct: 293 KDLVTWGTIIDGYVRVERINEALMMYRSMISAGWEPNDVMMVDLISGCGRTMAMTEGQQL 352

Query: 208 HGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDM 267
              V+  GF     I S+I+  YA CG +++A   F      +V +W  +++GY +   +
Sbjct: 353 LSAVVKMGFDCYDFIQSTIIHLYAACGRINEACLQFRIGSKENVASWNALIAGYVRNRMI 412

Query: 268 ESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCAC 327
           + A +LFNEMPE++  SW+T+I+GYT+N     ALELF +M+   I+PN+ T  S L A 
Sbjct: 413 DRAMELFNEMPERDVFSWSTMISGYTQNEQPNLALELFHKMVASGIKPNEVTMVSVLSAI 472

Query: 328 ASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVF-DLTDNKENSML 386
           A+  +LK G+  H ++   +   +  + +++IDMY+KCG +N+  +VF ++ +       
Sbjct: 473 ATSGTLKEGRWAHEYVHNNSITVSDNLSAAIIDMYAKCGSINNALEVFYEIREKASTVSP 532

Query: 387 WNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMT 446
           WN +I  L  HG+   ++++F D+ R  +K + IT   +L AC H GLV+ G  +F SM 
Sbjct: 533 WNAIICGLAVHGHANLSLKIFSDLERRHIKLNAITFIGVLTACCHVGLVESGKRHFMSMK 592

Query: 447 HDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMG 506
            +  I P+ +H+ C+++LL +AG  ++    +  MP + D  +W  L   CR HGN+D+G
Sbjct: 593 SEHSIDPDIKHYGCMVDLLGRAGRLEEAEEMIRSMPMKADVVIWGTLLAACRTHGNVDVG 652

Query: 507 RKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKK 554
            +  + L    P   A+  LLS++Y+  GK      VR+ +   + ++
Sbjct: 653 ERAAENLARLEPSHGASRVLLSNMYADAGKWEDAFLVRRAMQSHRMQR 700



 Score =  227 bits (579), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 135/487 (27%), Positives = 245/487 (50%), Gaps = 35/487 (7%)

Query: 59  LQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKN 118
           L+ C++   L  GK++H  +  +   +   F+ N LI+MY KCG  VDA+ +FD  P  +
Sbjct: 73  LKFCSDHLFLSQGKQIHCLVSKSGLGS-NNFIQNSLINMYGKCGLLVDAKSIFDVCPRSD 131

Query: 119 LFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRR 178
             SYN M+SGY   G + +A  LFD M  +  VS+ TMI+G++++    + ++ +K +R 
Sbjct: 132 PVSYNVMISGYVKSGQLDYACELFDEMPVKGCVSYTTMIMGFSQNECWNQAVELFKQMRN 191

Query: 179 FSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSD 238
             +  NE + A +++       +   R +HG V+   F   V++S++++  Y  C  L +
Sbjct: 192 VGVVPNEVTIATLVSAYSHFGGIWACRMLHGLVIKMLFEEFVLVSTNLLRMYCVCSSLVE 251

Query: 239 ARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLG 298
           AR LFDE   +++++W  M++GY+K G ++SA  +F  +P K+ V+W T+I GY R    
Sbjct: 252 ARALFDEMPEKNIVSWNVMLNGYSKAGFVDSARVVFERIPNKDLVTWGTIIDGYVRVERI 311

Query: 299 QKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSL 358
            +AL ++  M+     PN       +  C   +++  G+Q+   +++  F     + S++
Sbjct: 312 NEALMMYRSMISAGWEPNDVMMVDLISGCGRTMAMTEGQQLLSAVVKMGFDCYDFIQSTI 371

Query: 359 IDMYSKCGCLNDGRQVFDLTDNKENSMLWN------------------------------ 388
           I +Y+ CG +N+    F +  +KEN   WN                              
Sbjct: 372 IHLYAACGRINEACLQFRI-GSKENVASWNALIAGYVRNRMIDRAMELFNEMPERDVFSW 430

Query: 389 -TMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTH 447
            TMIS  TQ+     A+ LFH MV S +KP+++T+  +L+A   SG ++EG  +     H
Sbjct: 431 STMISGYTQNEQPNLALELFHKMVASGIKPNEVTMVSVLSAIATSGTLKEG-RWAHEYVH 489

Query: 448 DLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSY-LWNALHGVCRIHGNIDMG 506
           +  I  +    A +I++ A+ G  +  +    ++  +  +   WNA+     +HG+ ++ 
Sbjct: 490 NNSITVSDNLSAAIIDMYAKCGSINNALEVFYEIREKASTVSPWNAIICGLAVHGHANLS 549

Query: 507 RKVVDQL 513
            K+   L
Sbjct: 550 LKIFSDL 556



 Score =  142 bits (358), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 99/382 (25%), Positives = 185/382 (48%), Gaps = 23/382 (6%)

Query: 185 EFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFD 244
           E      L  C     L   +Q+H  V  +G  SN  I +S+++ Y KCG L DA+ +FD
Sbjct: 66  ELVLVSALKFCSDHLFLSQGKQIHCLVSKSGLGSNNFIQNSLINMYGKCGLLVDAKSIFD 125

Query: 245 ETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALEL 304
                D +++  M+SGY K G ++ A +LF+EMP K  VS+TT+I G+++N    +A+EL
Sbjct: 126 VCPRSDPVSYNVMISGYVKSGQLDYACELFDEMPVKGCVSYTTMIMGFSQNECWNQAVEL 185

Query: 305 FTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSK 364
           F +M  + + PN+ T ++ + A +    +   + +HG +I+  F    +V ++L+ MY  
Sbjct: 186 FKQMRNVGVVPNEVTIATLVSAYSHFGGIWACRMLHGLVIKMLFEEFVLVSTNLLRMYCV 245

Query: 365 CGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAV 424
           C  L + R +FD    K N + WN M++  ++ G+ + A  +F  +       D +T   
Sbjct: 246 CSSLVEARALFDEMPEK-NIVSWNVMLNGYSKAGFVDSARVVFERIPNK----DLVTWGT 300

Query: 425 ILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCS------DQLMNQL 478
           I++       + E L  + SM    G  PN      +++L++  G +       QL++ +
Sbjct: 301 IIDGYVRVERINEALMMYRSMI-SAGWEPND---VMMVDLISGCGRTMAMTEGQQLLSAV 356

Query: 479 EKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGR 538
            KM ++   ++ + +     IH     GR + +  +     S       +++ +   + R
Sbjct: 357 VKMGFDCYDFIQSTI-----IHLYAACGR-INEACLQFRIGSKENVASWNALIAGYVRNR 410

Query: 539 LVEKVRQLINERQFKKEQAISW 560
           ++++  +L NE    +    SW
Sbjct: 411 MIDRAMELFNE--MPERDVFSW 430



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 91/393 (23%), Positives = 167/393 (42%), Gaps = 53/393 (13%)

Query: 24  FLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQR 83
           + S+IS G     +  +DL++  G      T+A    Q   S  +K+G   +        
Sbjct: 318 YRSMISAGWEPNDVMMVDLISGCG-----RTMAMTEGQQLLSAVVKMGFDCY-------- 364

Query: 84  KTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFD 143
                F+ + +I +Y  CG   +A   F     +N+ S+N +++GY    M+  A  LF+
Sbjct: 365 ----DFIQSTIIHLYAACGRINEACLQFRIGSKENVASWNALIAGYVRNRMIDRAMELFN 420

Query: 144 NMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKL 203
            M ERDV SW+TMI GY ++      L+ +  +    I  NE +   +L+       LK 
Sbjct: 421 EMPERDVFSWSTMISGYTQNEQPNLALELFHKMVASGIKPNEVTMVSVLSAIATSGTLKE 480

Query: 204 TRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDET--DARDVLTWTTMVSGY 261
            R  H  V       +  +S++I+D YAKCG +++A  +F E    A  V  W  ++ G 
Sbjct: 481 GRWAHEYVHNNSITVSDNLSAAIIDMYAKCGSINNALEVFYEIREKASTVSPWNAIICGL 540

Query: 262 AKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFS 321
           A  G    + K+F+++  ++                               I+ N  TF 
Sbjct: 541 AVHGHANLSLKIFSDLERRH-------------------------------IKLNAITFI 569

Query: 322 SCLCACASIVSLKHGKQVHGFLIRTNFRSNTIV--MSSLIDMYSKCGCLNDGRQVFDLTD 379
             L AC  +  ++ GK+ H   +++    +  +     ++D+  + G L +  ++     
Sbjct: 570 GVLTACCHVGLVESGKR-HFMSMKSEHSIDPDIKHYGCMVDLLGRAGRLEEAEEMIRSMP 628

Query: 380 NKENSMLWNTMISALTQHGYDEQAIRLFHDMVR 412
            K + ++W T+++A   HG  +   R   ++ R
Sbjct: 629 MKADVVIWGTLLAACRTHGNVDVGERAAENLAR 661


>gi|224133790|ref|XP_002327681.1| predicted protein [Populus trichocarpa]
 gi|222836766|gb|EEE75159.1| predicted protein [Populus trichocarpa]
          Length = 654

 Score =  299 bits (765), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 151/464 (32%), Positives = 261/464 (56%), Gaps = 5/464 (1%)

Query: 131 NLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAG 190
           N+ +  +  ++F+ +   +   +N +I GY     ++E  +FY ++R+  +    F+F  
Sbjct: 92  NIPVDPYPLSIFNQVNYPNPFLYNALIRGYLIEERLKESTEFYSLMRKEGVVPVSFTFTA 151

Query: 191 ILTICVKLEELKLTRQVHGQ-VLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDAR 249
           +   C    ++ L RQ+HGQ +LV GF  ++ + +S++D Y KCG L   R++FDE   R
Sbjct: 152 LFKACGAKMDVGLGRQIHGQTILVGGFGEDLHVGNSMIDMYIKCGFLECGRKVFDEMPNR 211

Query: 250 DVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMM 309
           DV++WT ++S Y K G+MESA +LF+ +P K+ V+WT +++G+ +N   ++A+  F +M 
Sbjct: 212 DVISWTELISAYVKSGNMESAGELFDGLPVKDMVAWTVMVSGFAQNAKPREAIMFFEKMQ 271

Query: 310 ILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNF--RSNTIVMSSLIDMYSKCGC 367
              +  ++ T    + ACA + + K+   +     ++ F  + + +V S+LIDMYSKCG 
Sbjct: 272 EFGVETDEITLIGVISACAQLGAAKYADWIRDVAEKSEFGGKHSVVVGSALIDMYSKCGS 331

Query: 368 LNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILN 427
           + D  +VF     + N   +++MI     HG    A++LF +MV++ +KP+++T   +L 
Sbjct: 332 VGDAYRVFQGMKER-NVYSYSSMILGFAMHGRVHDAMKLFDEMVKTEIKPNRVTFIGVLT 390

Query: 428 ACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDS 487
           AC+H+G+V++G   FE M    GI P+ +H+ C+++LL +AG   +    ++ MP E   
Sbjct: 391 ACSHAGMVEQGWQIFELMEKCYGIKPSADHYTCMVDLLGRAGRLQEAHELVKTMPIEPHG 450

Query: 488 YLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLI 547
            +W AL G CRIH + D+     + L +  P     + LL++IY++ G+   V  VR+L+
Sbjct: 451 GVWGALLGACRIHKSPDIAAIAANHLFELEPYCIGNYILLANIYASCGRWNDVSTVRKLM 510

Query: 548 NERQFKKEQAISWIEIENK-VHAFSVSDSLHPMRDVLYSVLEQL 590
             R  +K  A SWIE E   VH F   D  HP    +   LE L
Sbjct: 511 RTRGLRKNPAFSWIESEKGMVHEFFSGDMTHPRSGEIKQALEDL 554



 Score =  161 bits (407), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 98/405 (24%), Positives = 190/405 (46%), Gaps = 42/405 (10%)

Query: 1   MPSNFSPRGI-NRKNLPN----NCLIQSFLSLISKGQLSEAISSLDLLAQRGIRLPAETL 55
           +P +  P  I N+ N PN    N LI+ +L    + +L E+     L+ + G+   + T 
Sbjct: 93  IPVDPYPLSIFNQVNYPNPFLYNALIRGYLI---EERLKESTEFYSLMRKEGVVPVSFTF 149

Query: 56  AFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIP 115
             + + C     + LG+++H    L         + N +I MY KCG     RKVFD++P
Sbjct: 150 TALFKACGAKMDVGLGRQIHGQTILVGGFGEDLHVGNSMIDMYIKCGFLECGRKVFDEMP 209

Query: 116 VKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKV 175
            +++ S+  ++S Y   G M+ A  LFD +  +D+V+W  M+ G+A++    E + F++ 
Sbjct: 210 NRDVISWTELISAYVKSGNMESAGELFDGLPVKDMVAWTVMVSGFAQNAKPREAIMFFEK 269

Query: 176 LRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLS--NVVISSSIVDAYAKC 233
           ++ F +  +E +  G+++ C +L   K    +      + F    +VV+ S+++D Y+KC
Sbjct: 270 MQEFGVETDEITLIGVISACAQLGAAKYADWIRDVAEKSEFGGKHSVVVGSALIDMYSKC 329

Query: 234 GELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYT 293
           G + DA R+F     R+V ++++M+ G+A  G +  A KLF+EM +              
Sbjct: 330 GSVGDAYRVFQGMKERNVYSYSSMILGFAMHGRVHDAMKLFDEMVKTE------------ 377

Query: 294 RNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRT-NFRSNT 352
                              I+PN+ TF   L AC+    ++ G Q+   + +    + + 
Sbjct: 378 -------------------IKPNRVTFIGVLTACSHAGMVEQGWQIFELMEKCYGIKPSA 418

Query: 353 IVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQH 397
              + ++D+  + G L +  ++      + +  +W  ++ A   H
Sbjct: 419 DHYTCMVDLLGRAGRLQEAHELVKTMPIEPHGGVWGALLGACRIH 463


>gi|413932901|gb|AFW67452.1| hypothetical protein ZEAMMB73_642603 [Zea mays]
          Length = 853

 Score =  299 bits (765), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 174/571 (30%), Positives = 291/571 (50%), Gaps = 64/571 (11%)

Query: 28  ISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPT 87
           +  G   EA      + + G R  + TL  +L    +   LK GK VH ++ +       
Sbjct: 319 VQNGLFVEAFGLFYDMQRSGARPDSITLVSLLPALTDLNGLKQGKEVHGYI-VRNCVNMD 377

Query: 88  TFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAE 147
            FL + L+ +YFKC      R V                         + A+NL+D    
Sbjct: 378 VFLVSALVDIYFKC------RDV-------------------------RMAQNLYDAARA 406

Query: 148 RDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQV 207
            DVV  +TMI GY  +G  EE L+ ++ L    I  N  + A +L  C  +  L L +Q+
Sbjct: 407 IDVVIGSTMISGYVLNGMSEEALQMFRYLLEQCIKPNAVTIASVLPGCASMAALPLGQQI 466

Query: 208 HGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDM 267
           HG VL   +     + S+++D YAKCG L                     +S Y      
Sbjct: 467 HGYVLRNAYERKCYVESALMDMYAKCGRLD--------------------LSHY------ 500

Query: 268 ESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCAC 327
                +F +M +K+ V+W ++I+ +++NG  Q+AL+LF +M +  I+ N  T S+ L AC
Sbjct: 501 -----IFLKMSQKDEVTWNSMISSFSQNGKPQEALDLFRQMCMEGIKYNNITISAALSAC 555

Query: 328 ASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLW 387
           AS+ ++ +GK++HG  I+   +++    S+LIDMY+KCG L    +VF+   +K N + W
Sbjct: 556 ASLPAIYYGKEIHGVTIKGPIKADIFAESALIDMYAKCGNLELALRVFEFMPDK-NEVSW 614

Query: 388 NTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTH 447
           N++ISA   HG  ++++ L H M     KPD +T   +++AC H+GLV+EG+  F+ MT 
Sbjct: 615 NSIISAYGAHGLVKESVSLLHGMQEEGYKPDHVTFLALISACAHAGLVEEGVQLFQCMTK 674

Query: 448 DLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGR 507
              I P  EH AC+++L +++G  D+ +  +  MP++ D+ +W AL   CR+H N+++  
Sbjct: 675 KYLIAPRMEHFACMVDLYSRSGKLDKAIQFIADMPFKPDAGIWGALLHACRVHRNVELAD 734

Query: 508 KVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKV 567
               +L   +P +S  + L+S+I +  G+   V KVR+L+ + +  K    SW+++ N  
Sbjct: 735 IASQELFKLDPANSGYYVLMSNINAVAGRWDGVSKVRRLMKDNKILKIPGYSWVDVNNSS 794

Query: 568 HAFSVSDSLHPMRDVLYSVLEQLAGQMGEDA 598
           H F  SD  HP  + +Y+ L+ L  ++ E+ 
Sbjct: 795 HLFVASDKSHPESEDIYTSLKTLLQELREEG 825



 Score =  171 bits (432), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 152/614 (24%), Positives = 260/614 (42%), Gaps = 114/614 (18%)

Query: 7   PRGINRKNLPNNCLIQSFLSLISKGQLSEAI-SSLDLLAQRGIRLP-AETLAFILQQCAE 64
           PR     +LP N LI+ F    + GQ   A+   + + +      P A TL ++++ CA 
Sbjct: 97  PRAAAASSLPWNWLIRGF---TAAGQHHLAVLFYVKMWSHPAAPSPDAHTLPYVVKSCAA 153

Query: 65  SKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNN 124
             ++ LG+ VH   +         ++ + L+ MY   G   +AR  FD IP ++   +N 
Sbjct: 154 LGAMSLGRLVHRTARAIGLAN-DVYVGSALVKMYADAGLLGNARDAFDGIPERDCVLWNV 212

Query: 125 MLSGYANLGMMKHARNLFDNM--------------------------------------- 145
           M+ G    G +  A  LF NM                                       
Sbjct: 213 MMDGCIKAGDVDGAVRLFRNMRASGCEPNFATLACFLSVCATDADLLSGAQLHSLAVKCG 272

Query: 146 AERDVVSWNTMIIGYAK--------------------------SGAVEEGL------KFY 173
            E +V   NT++  YAK                          SG V+ GL       FY
Sbjct: 273 LEPEVAVANTLLAMYAKCQCLDDAWRLFELMPQDDLVTWNGMISGCVQNGLFVEAFGLFY 332

Query: 174 KVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKC 233
             ++R     +  +   +L     L  LK  ++VHG ++      +V + S++VD Y KC
Sbjct: 333 D-MQRSGARPDSITLVSLLPALTDLNGLKQGKEVHGYIVRNCVNMDVFLVSALVDIYFKC 391

Query: 234 GELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYT 293
            ++  A+ L+D   A DV+  +TM+SGY                                
Sbjct: 392 RDVRMAQNLYDAARAIDVVIGSTMISGY-------------------------------V 420

Query: 294 RNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTI 353
            NG+ ++AL++F  ++   I+PN  T +S L  CAS+ +L  G+Q+HG+++R  +     
Sbjct: 421 LNGMSEEALQMFRYLLEQCIKPNAVTIASVLPGCASMAALPLGQQIHGYVLRNAYERKCY 480

Query: 354 VMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRS 413
           V S+L+DMY+KCG L+    +F L  ++++ + WN+MIS+ +Q+G  ++A+ LF  M   
Sbjct: 481 VESALMDMYAKCGRLDLSHYIF-LKMSQKDEVTWNSMISSFSQNGKPQEALDLFRQMCME 539

Query: 414 SVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQ 473
            +K + IT++  L+AC     +  G      +T    I  +    + LI++ A+ G  + 
Sbjct: 540 GIKYNNITISAALSACASLPAIYYG-KEIHGVTIKGPIKADIFAESALIDMYAKCGNLEL 598

Query: 474 LMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSA 533
            +   E MP + +   WN++      HG +     ++  +  Q       H    ++ SA
Sbjct: 599 ALRVFEFMP-DKNEVSWNSIISAYGAHGLVKESVSLLHGM--QEEGYKPDHVTFLALISA 655

Query: 534 LGKGRLVEKVRQLI 547
                LVE+  QL 
Sbjct: 656 CAHAGLVEEGVQLF 669



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 99/391 (25%), Positives = 162/391 (41%), Gaps = 64/391 (16%)

Query: 52  AETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNH--LISMYFKCGSDVDARK 109
           A+ L  +L+ C  +  L LG ++H    ++   +    L+ H  L+ MY       DA  
Sbjct: 32  ADRLLAVLRGCVSAPHLPLGLQIHARAVVSGALSDHNHLALHTRLLGMYVLARRFRDAVA 91

Query: 110 VFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEG 169
           VF  +P                              A    + WN +I G+  +G     
Sbjct: 92  VFSALP----------------------------RAAAASSLPWNWLIRGFTAAGQHHLA 123

Query: 170 LKFYKVL--RRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIV 227
           + FY  +     + S +  +   ++  C  L  + L R VH      G  ++V + S++V
Sbjct: 124 VLFYVKMWSHPAAPSPDAHTLPYVVKSCAALGAMSLGRLVHRTARAIGLANDVYVGSALV 183

Query: 228 DAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTT 287
             YA  G L +         ARD                       F+ +PE++ V W  
Sbjct: 184 KMYADAGLLGN---------ARDA----------------------FDGIPERDCVLWNV 212

Query: 288 LIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTN 347
           ++ G  + G    A+ LF  M      PN  T +  L  CA+   L  G Q+H   ++  
Sbjct: 213 MMDGCIKAGDVDGAVRLFRNMRASGCEPNFATLACFLSVCATDADLLSGAQLHSLAVKCG 272

Query: 348 FRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLF 407
                 V ++L+ MY+KC CL+D  ++F+L   +++ + WN MIS   Q+G   +A  LF
Sbjct: 273 LEPEVAVANTLLAMYAKCQCLDDAWRLFELMP-QDDLVTWNGMISGCVQNGLFVEAFGLF 331

Query: 408 HDMVRSSVKPDKITLAVILNACTHSGLVQEG 438
           +DM RS  +PD ITL  +L A T    +++G
Sbjct: 332 YDMQRSGARPDSITLVSLLPALTDLNGLKQG 362



 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 80/317 (25%), Positives = 133/317 (41%), Gaps = 36/317 (11%)

Query: 190 GILTICVKLEELKLTRQVHGQVLVTGFLSN---VVISSSIVDAYAKCGELSDARRLFDET 246
            +L  CV    L L  Q+H + +V+G LS+   + + + ++  Y        ARR  D  
Sbjct: 37  AVLRGCVSAPHLPLGLQIHARAVVSGALSDHNHLALHTRLLGMYVL------ARRFRDA- 89

Query: 247 DARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFT 306
                      V+ ++ L    +AS L           W  LI G+T  G    A+  + 
Sbjct: 90  -----------VAVFSALPRAAAASSL----------PWNWLIRGFTAAGQHHLAVLFYV 128

Query: 307 RMM--ILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSK 364
           +M        P+ HT    + +CA++ ++  G+ VH         ++  V S+L+ MY+ 
Sbjct: 129 KMWSHPAAPSPDAHTLPYVVKSCAALGAMSLGRLVHRTARAIGLANDVYVGSALVKMYAD 188

Query: 365 CGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAV 424
            G L + R  FD    ++  +LWN M+    + G  + A+RLF +M  S  +P+  TLA 
Sbjct: 189 AGLLGNARDAFDGIPERD-CVLWNVMMDGCIKAGDVDGAVRLFRNMRASGCEPNFATLAC 247

Query: 425 ILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYE 484
            L+ C     +  G     S+    G+ P       L+ + A+  C D      E MP +
Sbjct: 248 FLSVCATDADLLSG-AQLHSLAVKCGLEPEVAVANTLLAMYAKCQCLDDAWRLFELMP-Q 305

Query: 485 HDSYLWNALHGVCRIHG 501
            D   WN +   C  +G
Sbjct: 306 DDLVTWNGMISGCVQNG 322



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 48/165 (29%), Positives = 83/165 (50%), Gaps = 8/165 (4%)

Query: 18  NCLIQSFLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLH 77
           N +I SF      G+  EA+     +   GI+    T++  L  CA   ++  GK +H  
Sbjct: 514 NSMISSF---SQNGKPQEALDLFRQMCMEGIKYNNITISAALSACASLPAIYYGKEIH-G 569

Query: 78  LKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKH 137
           + +        F  + LI MY KCG+   A +VF+ +P KN  S+N+++S Y   G++K 
Sbjct: 570 VTIKGPIKADIFAESALIDMYAKCGNLELALRVFEFMPDKNEVSWNSIISAYGAHGLVKE 629

Query: 138 ARNLFDNMAER----DVVSWNTMIIGYAKSGAVEEGLKFYKVLRR 178
           + +L   M E     D V++  +I   A +G VEEG++ ++ + +
Sbjct: 630 SVSLLHGMQEEGYKPDHVTFLALISACAHAGLVEEGVQLFQCMTK 674



 Score = 46.2 bits (108), Expect = 0.054,   Method: Compositional matrix adjust.
 Identities = 42/186 (22%), Positives = 74/186 (39%), Gaps = 9/186 (4%)

Query: 326 ACASIVSLKHGKQVHGFLIRTNFRSN---TIVMSSLIDMYSKCGCLNDGRQVFDLTDNKE 382
            C S   L  G Q+H   + +   S+     + + L+ MY       D   VF       
Sbjct: 41  GCVSAPHLPLGLQIHARAVVSGALSDHNHLALHTRLLGMYVLARRFRDAVAVFSALPRAA 100

Query: 383 --NSMLWNTMISALTQHGYDEQAIRLFHDMVR--SSVKPDKITLAVILNACTHSGLVQEG 438
             +S+ WN +I   T  G    A+  +  M    ++  PD  TL  ++ +C   G +  G
Sbjct: 101 AASSLPWNWLIRGFTAAGQHHLAVLFYVKMWSHPAAPSPDAHTLPYVVKSCAALGAMSLG 160

Query: 439 LTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCR 498
                +    +G+  +    + L+++ A AG      +  + +P E D  LWN +   C 
Sbjct: 161 RLVHRT-ARAIGLANDVYVGSALVKMYADAGLLGNARDAFDGIP-ERDCVLWNVMMDGCI 218

Query: 499 IHGNID 504
             G++D
Sbjct: 219 KAGDVD 224


>gi|242076494|ref|XP_002448183.1| hypothetical protein SORBIDRAFT_06g022570 [Sorghum bicolor]
 gi|241939366|gb|EES12511.1| hypothetical protein SORBIDRAFT_06g022570 [Sorghum bicolor]
          Length = 549

 Score =  299 bits (765), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 177/569 (31%), Positives = 288/569 (50%), Gaps = 53/569 (9%)

Query: 29  SKGQLSEAISSLDLLAQRGIRLP----AETLAFILQQCAESKSLKLGKRVHLHLKLTQRK 84
           ++G   +AIS    L  R    P      +L   L+ CA      LG  +H  L +    
Sbjct: 26  AQGHFRDAISLF--LRMRACAAPRSSVPASLPAALKSCAALGLSALGASLHA-LAIRSGA 82

Query: 85  TPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYN-NMLSGYANLGMMKHARNLFD 143
               F +N L+++Y K             +P   L S     + G  +   ++  R +FD
Sbjct: 83  FADRFTANALLNLYCK-------------LPCSYLHSTGVTSVGGTGSSTALESVRKVFD 129

Query: 144 NMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKL 203
            M ERDVVSWNT+++G A+ G   E L   + + R     + F+ + +L I  +  ++K 
Sbjct: 130 EMIERDVVSWNTLVLGCAEEGRHHEALVLVRKMWREGFRPDSFTLSSVLPIFAECADVKR 189

Query: 204 TRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAK 263
             +VHG  +  GF ++V + SS++D YA C            TD                
Sbjct: 190 GSEVHGFAVRNGFDNDVFVGSSLIDMYANC----------TRTD---------------- 223

Query: 264 LGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSC 323
                 + K+F+ +P ++P+ W +++AG  +NG  ++AL +F RM+   +RP   TFSS 
Sbjct: 224 -----YSVKVFDNLPVRDPILWNSVLAGCAQNGSVEEALGIFRRMLQTGVRPVPVTFSSL 278

Query: 324 LCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKEN 383
           +  C ++ SL+ GKQ+H ++IR  F  N  + SSLIDMY KCG ++    +FD   + + 
Sbjct: 279 IPVCGNLASLRFGKQLHAYVIRGGFEDNVFISSSLIDMYCKCGEISIAHHIFDRMCSPD- 337

Query: 384 SMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFE 443
            + W  MI     HG   +A+ LF  M   + KP+ IT   +L AC+H+GLV +G  YF+
Sbjct: 338 VVSWTAMIMGYALHGPAREALVLFERMELGNAKPNHITFLAVLTACSHAGLVDKGWKYFK 397

Query: 444 SMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNI 503
           SM+   GI+P  EH A L ++L +AG  D+  N + KM  +  + +W+ L   CR+H N 
Sbjct: 398 SMSDHYGIVPTLEHCAALADILGRAGELDEAYNFISKMQIKPTASVWSTLLRACRVHKNT 457

Query: 504 DMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEI 563
            +  +V  ++++  P+S  +H +LS++YSA G+      +R+ + ++  KK+ A SWIE+
Sbjct: 458 MLAEEVAKKIMELEPRSIGSHVVLSNMYSASGRWNEAAHLRKSMRKKGMKKDPACSWIEV 517

Query: 564 ENKVHAFSVSDSLHPMRDVLYSVLEQLAG 592
           +NK+H F   D  HP      ++ E LA 
Sbjct: 518 KNKLHVFVAHDRSHPCCIECSTLSEHLAA 546



 Score =  124 bits (311), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 98/389 (25%), Positives = 165/389 (42%), Gaps = 67/389 (17%)

Query: 10  INRKNLPNNCLIQSFLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLK 69
           I R  +  N L+   L    +G+  EA+  +  + + G R  + TL+ +L   AE   +K
Sbjct: 132 IERDVVSWNTLV---LGCAEEGRHHEALVLVRKMWREGFRPDSFTLSSVLPIFAECADVK 188

Query: 70  LGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGY 129
            G  VH    +        F+ + LI MY  C     + KVFD +PV++   +N++L+G 
Sbjct: 189 RGSEVH-GFAVRNGFDNDVFVGSSLIDMYANCTRTDYSVKVFDNLPVRDPILWNSVLAG- 246

Query: 130 ANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFA 189
                                          A++G+VEE L  ++ + +  +     +F+
Sbjct: 247 ------------------------------CAQNGSVEEALGIFRRMLQTGVRPVPVTFS 276

Query: 190 GILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDAR 249
            ++ +C  L  L+  +Q+H  V+  GF  NV ISSS++D Y KCGE+S A  +FD   + 
Sbjct: 277 SLIPVCGNLASLRFGKQLHAYVIRGGFEDNVFISSSLIDMYCKCGEISIAHHIFDRMCSP 336

Query: 250 DVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMM 309
           DV++WT M+ GYA                                +G  ++AL LF RM 
Sbjct: 337 DVVSWTAMIMGYA-------------------------------LHGPAREALVLFERME 365

Query: 310 ILRIRPNQHTFSSCLCACASIVSLKHG-KQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCL 368
           +   +PN  TF + L AC+    +  G K                  ++L D+  + G L
Sbjct: 366 LGNAKPNHITFLAVLTACSHAGLVDKGWKYFKSMSDHYGIVPTLEHCAALADILGRAGEL 425

Query: 369 NDGRQVFDLTDNKENSMLWNTMISALTQH 397
           ++          K  + +W+T++ A   H
Sbjct: 426 DEAYNFISKMQIKPTASVWSTLLRACRVH 454



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 80/283 (28%), Positives = 133/283 (46%), Gaps = 19/283 (6%)

Query: 151 VSWNTMIIGYAKSGAVEEGLKFYKVLRRFSI--SCNEFSFAGILTICVKLEELKLTRQVH 208
           +SW   I   A  G   + +  +  +R  +   S    S    L  C  L    L   +H
Sbjct: 15  LSWAHQIRMAAAQGHFRDAISLFLRMRACAAPRSSVPASLPAALKSCAALGLSALGASLH 74

Query: 209 GQVLVTGFLSNVVISSSIVDAYAK--CGELSDARRLFDETDARDVLTWTTMVSGYAKLGD 266
              + +G  ++   ++++++ Y K  C  L                T  T V G      
Sbjct: 75  ALAIRSGAFADRFTANALLNLYCKLPCSYLHS--------------TGVTSVGGTGSSTA 120

Query: 267 MESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCA 326
           +ES  K+F+EM E++ VSW TL+ G    G   +AL L  +M     RP+  T SS L  
Sbjct: 121 LESVRKVFDEMIERDVVSWNTLVLGCAEEGRHHEALVLVRKMWREGFRPDSFTLSSVLPI 180

Query: 327 CASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSML 386
            A    +K G +VHGF +R  F ++  V SSLIDMY+ C   +   +VFD    ++  +L
Sbjct: 181 FAECADVKRGSEVHGFAVRNGFDNDVFVGSSLIDMYANCTRTDYSVKVFDNLPVRD-PIL 239

Query: 387 WNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNAC 429
           WN++++   Q+G  E+A+ +F  M+++ V+P  +T + ++  C
Sbjct: 240 WNSVLAGCAQNGSVEEALGIFRRMLQTGVRPVPVTFSSLIPVC 282



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 55/252 (21%), Positives = 102/252 (40%), Gaps = 32/252 (12%)

Query: 278 PEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQ--HTFSSCLCACASIVSLKH 335
           P   P+SW   I      G  + A+ LF RM       +    +  + L +CA++     
Sbjct: 10  PWPPPLSWAHQIRMAAAQGHFRDAISLFLRMRACAAPRSSVPASLPAALKSCAALGLSAL 69

Query: 336 GKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGC-------------------LNDGRQVFD 376
           G  +H   IR+   ++    ++L+++Y K  C                   L   R+VFD
Sbjct: 70  GASLHALAIRSGAFADRFTANALLNLYCKLPCSYLHSTGVTSVGGTGSSTALESVRKVFD 129

Query: 377 LTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQ 436
               ++  + WNT++    + G   +A+ L   M R   +PD  TL+ +L        V+
Sbjct: 130 EMIERD-VVSWNTLVLGCAEEGRHHEALVLVRKMWREGFRPDSFTLSSVLPIFAECADVK 188

Query: 437 EGLTYFESMTHDLGIIPNQEHH----ACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNA 492
            G     S  H   +    ++     + LI++ A    +D  +   + +P   D  LWN+
Sbjct: 189 RG-----SEVHGFAVRNGFDNDVFVGSSLIDMYANCTRTDYSVKVFDNLPVR-DPILWNS 242

Query: 493 LHGVCRIHGNID 504
           +   C  +G+++
Sbjct: 243 VLAGCAQNGSVE 254


>gi|147856409|emb|CAN80331.1| hypothetical protein VITISV_018275 [Vitis vinifera]
          Length = 681

 Score =  299 bits (765), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 184/587 (31%), Positives = 293/587 (49%), Gaps = 47/587 (8%)

Query: 16  PNNCLIQSFLSLISK-GQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRV 74
           P   L    +++ SK G+L  A+   D + QR +      ++ + Q    S+++    R 
Sbjct: 38  PCTFLTNHLVNMYSKCGELDHALKLFDTMPQRNLVSWTAMISGLSQNSKFSEAI----RT 93

Query: 75  HLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVK-----NLFSYNNMLSGY 129
              +++   + PT F  +  I      GS ++  K    + +K      LF  +N+   Y
Sbjct: 94  FCGMRICG-EVPTQFAFSSAIRACASLGS-IEMGKQMHCLALKFGIGSELFVGSNLEDMY 151

Query: 130 ANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFA 189
           +  G M  A  +F+ M  +D VSW  MI GY+K G  EE L  +K +    ++ ++    
Sbjct: 152 SKCGAMFDACKVFEEMPCKDEVSWTAMIDGYSKIGEFEEALLAFKKMIDEEVTIDQHVLC 211

Query: 190 GILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDAR 249
             L  C  L+  K  R VH  V+  GF S++ + +++ D Y+K                 
Sbjct: 212 STLGACGALKACKFGRSVHSSVVKLGFESDIFVGNALTDMYSKA---------------- 255

Query: 250 DVLTWTTMVSGYAKLGDMESASKLFNEMPE-KNPVSWTTLIAGYTRNGLGQKALELFTRM 308
                          GDMESAS +F    E +N VS+T LI GY      +K L +F  +
Sbjct: 256 ---------------GDMESASNVFGIDSECRNVVSYTCLIDGYVETEQIEKGLSVFVEL 300

Query: 309 MILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCL 368
               I PN+ TFSS + ACA+  +L+ G Q+H  +++ NF  +  V S L+DMY KCG L
Sbjct: 301 RRQGIEPNEFTFSSLIKACANQAALEQGTQLHAQVMKINFDEDPFVSSILVDMYGKCGLL 360

Query: 369 NDGRQVFD-LTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILN 427
               Q FD + D  E  + WN+++S   QHG  + AI+ F  MV   VKP+ IT   +L 
Sbjct: 361 EHAIQAFDEIGDPTE--IAWNSLVSVFGQHGLGKDAIKFFERMVDRGVKPNAITFISLLT 418

Query: 428 ACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDS 487
            C+H+GLV+EGL YF SM    G++P +EH++C+I+LL +AG   +    + +MP+E ++
Sbjct: 419 GCSHAGLVEEGLDYFYSMDKTYGVVPGEEHYSCVIDLLGRAGRLKEAKEFINRMPFEPNA 478

Query: 488 YLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLI 547
           + W +  G CRIHG+ +MG+   ++L+   P++S    LLS+IY+   +   V  VR  +
Sbjct: 479 FGWCSFLGACRIHGDKEMGKLAAEKLVKLEPKNSGALVLLSNIYANERQWEDVRSVRMRM 538

Query: 548 NERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQM 594
            +   KK    SW+++  K H F   D  H  +  +Y  L+ L  Q+
Sbjct: 539 RDGNVKKLPGYSWVDVGYKTHVFGAEDWSHXRKSAIYEKLDXLLDQI 585



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 100/401 (24%), Positives = 176/401 (43%), Gaps = 76/401 (18%)

Query: 187 SFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDET 246
           + A ++    K + L+  +Q+H  ++  G+     +++ +V+ Y+KCGEL  A +LFD  
Sbjct: 7   ALAHVIQTYAKTKRLRRGKQLHALLICAGYTPCTFLTNHLVNMYSKCGELDHALKLFDTM 66

Query: 247 DARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFT 306
             R++++WT M+S                               G ++N    +A+  F 
Sbjct: 67  PQRNLVSWTAMIS-------------------------------GLSQNSKFSEAIRTFC 95

Query: 307 RMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCG 366
            M I    P Q  FSS + ACAS+ S++ GKQ+H   ++    S   V S+L DMYSKCG
Sbjct: 96  GMRICGEVPTQFAFSSAIRACASLGSIEMGKQMHCLALKFGIGSELFVGSNLEDMYSKCG 155

Query: 367 CLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVIL 426
            + D  +VF+    K+  + W  MI   ++ G  E+A+  F  M+   V  D+  L   L
Sbjct: 156 AMFDACKVFEEMPCKDE-VSWTAMIDGYSKIGEFEEALLAFKKMIDEEVTIDQHVLCSTL 214

Query: 427 NAC-----------THSGLVQEGLTY-----------------FESMTHDLGI---IPNQ 455
            AC            HS +V+ G                     ES ++  GI     N 
Sbjct: 215 GACGALKACKFGRSVHSSVVKLGFESDIFVGNALTDMYSKAGDMESASNVFGIDSECRNV 274

Query: 456 EHHACLIELLAQAGCSDQLMN---QLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQ 512
             + CLI+   +    ++ ++   +L +   E + + +++L   C     ++ G ++  Q
Sbjct: 275 VSYTCLIDGYVETEQIEKGLSVFVELRRQGIEPNEFTFSSLIKACANQAALEQGTQLHAQ 334

Query: 513 LI----DQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINE 549
           ++    D++P  S+   +L  +Y   GK  L+E   Q  +E
Sbjct: 335 VMKINFDEDPFVSS---ILVDMY---GKCGLLEHAIQAFDE 369


>gi|297836116|ref|XP_002885940.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297331780|gb|EFH62199.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 944

 Score =  299 bits (765), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 159/481 (33%), Positives = 264/481 (54%), Gaps = 33/481 (6%)

Query: 123 NNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSIS 182
           N +L  Y+    +   RNLF+ M E D VS+N +I  Y+++   EE L  ++ ++     
Sbjct: 283 NQILHFYSKHDRVLETRNLFNEMPELDFVSYNVVISSYSQAEQYEESLNLFREMQCMGFD 342

Query: 183 CNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRL 242
              F FA +L+I   L  L++ RQVH Q +V    S + + +S+VD YAKC        +
Sbjct: 343 RRNFPFATMLSIAANLSSLQVGRQVHCQAIVATADSILHVGNSLVDMYAKC-------EM 395

Query: 243 FDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKAL 302
           FDE                        A  +F  + +++ VSWT LI+GY + GL    L
Sbjct: 396 FDE------------------------AELIFKSLSQRSTVSWTALISGYVQKGLHGAGL 431

Query: 303 ELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMY 362
           +LFT+M    +R +Q TF++ L A A   SL  GKQ+H F+IR+    N    S L+DMY
Sbjct: 432 KLFTKMRGANLRADQSTFATVLKASAGFASLLLGKQLHAFIIRSGNLENVFSGSGLVDMY 491

Query: 363 SKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITL 422
           +KCG + D  QVF+   ++ N++ WN +ISA   +G  E AI  F  M++S ++PD +++
Sbjct: 492 AKCGSIKDAVQVFEEMPDR-NAVSWNALISAYADNGDGEAAIGAFTKMIQSGLQPDSVSI 550

Query: 423 AVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMP 482
             +L AC+H G V++G  +F++M+   GI P ++H+AC+++LL + G   +    +++MP
Sbjct: 551 LGVLIACSHCGFVEQGTEFFQAMSPIYGITPKKKHYACMLDLLGRNGRFAEAEKLMDEMP 610

Query: 483 YEHDSYLWNALHGVCRIHGNIDMGRKVVDQLID-QNPQSSATHGLLSSIYSALGKGRLVE 541
           +E D  +W+++   CRI+ N  +  +  +QL   +  + +A +  +S+IY+A GK   V 
Sbjct: 611 FEPDEIMWSSVLNACRIYKNQSLAERAAEQLFSMEKLRDAAAYVSMSNIYAAAGKWENVR 670

Query: 542 KVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQMGEDAPSL 601
            V++ + ER  KK  A SW+E+ +K+H FS +D  HP  D +   + +L  ++  +    
Sbjct: 671 HVKKAMRERGIKKVPAYSWVEVNHKIHVFSSNDQTHPNGDEIVKKINELTTEIEREGYKP 730

Query: 602 D 602
           D
Sbjct: 731 D 731



 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 85/322 (26%), Positives = 152/322 (47%), Gaps = 34/322 (10%)

Query: 91  SNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDV 150
           SN  +    + G    A KV+D++P KN  S N M+SGY  +G +  AR+LFD M +R V
Sbjct: 47  SNFTVEDLLRRGQVSAALKVYDEMPHKNTVSTNTMISGYVKMGDLSSARHLFDAMPDRTV 106

Query: 151 VSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQ 210
           V+W  ++  YA +   +E  K ++ + R     +  +F  +L  C          QVH  
Sbjct: 107 VTWTILMGWYAGNNHFDEAFKLFRQMCRSCTLPDYVTFTTLLPGCNDAVPQNAVGQVHAF 166

Query: 211 VLVTGFLSNVVIS--SSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDME 268
            +  GF +N+ ++  + ++ +Y +   L  A  LF+E   +D +T+ T+++GY K     
Sbjct: 167 AVKLGFDTNLFLTVCNVLLKSYCEVRRLDLACVLFEEILDKDSVTFNTLITGYEK----- 221

Query: 269 SASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACA 328
                                     +GL  +A+ LF +M     +P+  TFS  L A  
Sbjct: 222 --------------------------DGLYTEAIHLFLKMRQSGHKPSDFTFSGVLKAVV 255

Query: 329 SIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWN 388
            +     G+Q+HG  + T F  +  V + ++  YSK   + + R +F+    + + + +N
Sbjct: 256 GLHDFALGQQLHGLSVTTGFSRDASVGNQILHFYSKHDRVLETRNLFNEMP-ELDFVSYN 314

Query: 389 TMISALTQHGYDEQAIRLFHDM 410
            +IS+ +Q    E+++ LF +M
Sbjct: 315 VVISSYSQAEQYEESLNLFREM 336



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 71/227 (31%), Positives = 123/227 (54%), Gaps = 3/227 (1%)

Query: 204 TRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAK 263
           TR+V  +++ TGF ++   S+  V+   + G++S A +++DE   ++ ++  TM+SGY K
Sbjct: 28  TRRVDARIIKTGFNTDTCRSNFTVEDLLRRGQVSAALKVYDEMPHKNTVSTNTMISGYVK 87

Query: 264 LGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSC 323
           +GD+ SA  LF+ MP++  V+WT L+  Y  N    +A +LF +M      P+  TF++ 
Sbjct: 88  MGDLSSARHLFDAMPDRTVVTWTILMGWYAGNNHFDEAFKLFRQMCRSCTLPDYVTFTTL 147

Query: 324 LCACASIVSLKHGKQVHGFLIRTNFRSNTI--VMSSLIDMYSKCGCLNDGRQVFDLTDNK 381
           L  C   V      QVH F ++  F +N    V + L+  Y +   L+    +F+   +K
Sbjct: 148 LPGCNDAVPQNAVGQVHAFAVKLGFDTNLFLTVCNVLLKSYCEVRRLDLACVLFEEILDK 207

Query: 382 ENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNA 428
           + S+ +NT+I+   + G   +AI LF  M +S  KP   T + +L A
Sbjct: 208 D-SVTFNTLITGYEKDGLYTEAIHLFLKMRQSGHKPSDFTFSGVLKA 253


>gi|222641236|gb|EEE69368.1| hypothetical protein OsJ_28705 [Oryza sativa Japonica Group]
          Length = 662

 Score =  299 bits (765), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 173/517 (33%), Positives = 270/517 (52%), Gaps = 45/517 (8%)

Query: 81  TQRKTPTTFLSNHLISMYFKC-GSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHAR 139
           T RKT  T+  N L++ Y +  G   DAR +FD+IP  +  SYN +LS +   G    AR
Sbjct: 92  TPRKTTATY--NCLLAGYARALGRLADARHLFDRIPTPDAVSYNTLLSCHFASGDADGAR 149

Query: 140 NLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLE 199
            LF +M  RDVVSWNTM+ G +KSGAVEE    +                  L + V+  
Sbjct: 150 RLFASMPVRDVVSWNTMVSGLSKSGAVEEAKAVF------------------LAMPVR-- 189

Query: 200 ELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLF-DETDARDVLTWTTMV 258
                              N V  +++V  +A   ++S A   F +  +  D + WT MV
Sbjct: 190 -------------------NSVSWNAMVSGFACSRDMSAAEEWFRNAPEKGDAVLWTAMV 230

Query: 259 SGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMI-LRIRPNQ 317
           SGY  +G++  A + F  MP +N VSW  ++AGY +N     AL LF  M+    ++PN 
Sbjct: 231 SGYMDIGNVVKAIEYFEAMPVRNLVSWNAVVAGYVKNSHADDALRLFRTMVREANVQPNA 290

Query: 318 HTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDL 377
            T SS L  C+++ +L  GKQ+H + ++     N  V +SL+ MY KCG L+   ++F  
Sbjct: 291 STLSSVLLGCSNLSALGFGKQIHQWCMKLPLSRNLTVGTSLVSMYCKCGDLSSACKLFGE 350

Query: 378 TDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQE 437
              ++  + WN MIS   QHG  ++AI LF  M    V+P+ IT   +L AC H+GL   
Sbjct: 351 MHTRD-VVAWNAMISGYAQHGDGKEAINLFERMKDEGVEPNWITFVAVLTACIHTGLCDF 409

Query: 438 GLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVC 497
           G+  FE M    GI P  +H++C+++LL +AG  ++ ++ +  MP+E     +  L   C
Sbjct: 410 GIRCFEGMQELYGIEPRVDHYSCMVDLLCRAGKLERAVDLIRSMPFEPHPSAYGTLLAAC 469

Query: 498 RIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQA 557
           R++ N++       +LI+++PQS+  +  L++IY+   +   V +VR+ + +    K   
Sbjct: 470 RVYKNLEFAELAAGKLIEKDPQSAGAYVQLANIYAGANQWDDVSRVRRWMKDNAVVKTPG 529

Query: 558 ISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQM 594
            SWIEI+  +H F  +D LHP   +++  L QLA +M
Sbjct: 530 YSWIEIKGVMHEFRSNDRLHPQLYLIHEKLGQLAERM 566



 Score = 62.8 bits (151), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 38/110 (34%), Positives = 62/110 (56%), Gaps = 8/110 (7%)

Query: 52  AETLAFILQQCAESKSLKLGKRVH---LHLKLTQRKTPTTFLSNHLISMYFKCGSDVDAR 108
           A TL+ +L  C+   +L  GK++H   + L L++  T    +   L+SMY KCG    A 
Sbjct: 290 ASTLSSVLLGCSNLSALGFGKQIHQWCMKLPLSRNLT----VGTSLVSMYCKCGDLSSAC 345

Query: 109 KVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDV-VSWNTMI 157
           K+F ++  +++ ++N M+SGYA  G  K A NLF+ M +  V  +W T +
Sbjct: 346 KLFGEMHTRDVVAWNAMISGYAQHGDGKEAINLFERMKDEGVEPNWITFV 395


>gi|449443909|ref|XP_004139718.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 642

 Score =  298 bits (764), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 159/480 (33%), Positives = 263/480 (54%), Gaps = 21/480 (4%)

Query: 135 MKHARNLFDNMAERDVVSWNTMIIGYAKSG----AVEEGLKFYKVLRRFSISCNEFSFAG 190
           + +AR +F  M E +   WNT++   A++       E  + F  +L    +  N F+F  
Sbjct: 68  IDYARAVFRQMPEPNCFCWNTILRVLAETNDEHLQSEALMLFSAMLCDGRVKPNRFTFPS 127

Query: 191 ILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLF------- 243
           +L  C +   L+  +Q+HG ++  GF  +  + S++V  Y  C  + DA  LF       
Sbjct: 128 VLKACARASRLREGKQIHGLIVKFGFHEDEFVISNLVRMYVMCAVMEDAYSLFCKNVVDF 187

Query: 244 -----DETDAR----DVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTR 294
                 E D R    +V+ W  M+ G  +LGD++SA  LF+EMP+++ VSW  +I+GY +
Sbjct: 188 DGSCQMELDKRKQDGNVVLWNIMIDGQVRLGDIKSAKNLFDEMPQRSVVSWNVMISGYAQ 247

Query: 295 NGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIV 354
           NG   +A+ LF  M    I PN  T  S L A A I +L+ GK +H +  +     + ++
Sbjct: 248 NGHFIEAINLFQEMQSSNIDPNYVTLVSVLPAIARIGALELGKWIHLYAGKNKIEIDDVL 307

Query: 355 MSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSS 414
            S+L+DMYSKCG +++  QVF+ T  K N++ W+ +I A   HG  E AI  FH M ++ 
Sbjct: 308 GSALVDMYSKCGSIDEALQVFE-TLPKRNAITWSAIIGAFAMHGRAEDAIIHFHLMGKAG 366

Query: 415 VKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQL 474
           V P+ +    IL+AC+H+GLV+EG ++F  M   +G+ P  EH+ C+++LL +AG  ++ 
Sbjct: 367 VTPNDVAYIGILSACSHAGLVEEGRSFFSHMVKVVGLQPRIEHYGCMVDLLGRAGHLEEA 426

Query: 475 MNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSAL 534
              +  MP E D  +W AL G C++H N+ MG +V + L++  P  S ++  LS++Y++L
Sbjct: 427 EELIRNMPIEPDDVIWKALLGACKMHKNLKMGERVAETLMELAPHDSGSYVALSNLYASL 486

Query: 535 GKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQM 594
           G    V +VR  +     +K+   SWIEI   +H F V D  H     + ++L +++ ++
Sbjct: 487 GNWEAVARVRLKMKGMDIRKDPGCSWIEIHGIIHEFLVEDDSHSKAKEIQAMLGEMSMKL 546



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 78/284 (27%), Positives = 144/284 (50%), Gaps = 24/284 (8%)

Query: 54  TLAFILQQCAESKSLKLGKRVH-LHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFD 112
           T   +L+ CA +  L+ GK++H L +K    +    F+ ++L+ MY  C    DA  +F 
Sbjct: 124 TFPSVLKACARASRLREGKQIHGLIVKFGFHED--EFVISNLVRMYVMCAVMEDAYSLFC 181

Query: 113 KIPVK----------------NLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTM 156
           K  V                 N+  +N M+ G   LG +K A+NLFD M +R VVSWN M
Sbjct: 182 KNVVDFDGSCQMELDKRKQDGNVVLWNIMIDGQVRLGDIKSAKNLFDEMPQRSVVSWNVM 241

Query: 157 IIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGF 216
           I GYA++G   E +  ++ ++  +I  N  +   +L    ++  L+L + +H        
Sbjct: 242 ISGYAQNGHFIEAINLFQEMQSSNIDPNYVTLVSVLPAIARIGALELGKWIHLYAGKNKI 301

Query: 217 LSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNE 276
             + V+ S++VD Y+KCG + +A ++F+    R+ +TW+ ++  +A  G  E A   F+ 
Sbjct: 302 EIDDVLGSALVDMYSKCGSIDEALQVFETLPKRNAITWSAIIGAFAMHGRAEDAIIHFHL 361

Query: 277 MPE----KNPVSWTTLIAGYTRNGLGQKALELFTRMM-ILRIRP 315
           M +     N V++  +++  +  GL ++    F+ M+ ++ ++P
Sbjct: 362 MGKAGVTPNDVAYIGILSACSHAGLVEEGRSFFSHMVKVVGLQP 405



 Score =  109 bits (272), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 87/341 (25%), Positives = 147/341 (43%), Gaps = 70/341 (20%)

Query: 266 DMESASKLFNEMPEKNPVSWTTL---IAGYTRNGLGQKALELFTRMMI-LRIRPNQHTFS 321
           D++ A  +F +MPE N   W T+   +A      L  +AL LF+ M+   R++PN+ TF 
Sbjct: 67  DIDYARAVFRQMPEPNCFCWNTILRVLAETNDEHLQSEALMLFSAMLCDGRVKPNRFTFP 126

Query: 322 SCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVF------ 375
           S L ACA    L+ GKQ+HG +++  F  +  V+S+L+ MY  C  + D   +F      
Sbjct: 127 SVLKACARASRLREGKQIHGLIVKFGFHEDEFVISNLVRMYVMCAVMEDAYSLFCKNVVD 186

Query: 376 -------DLTDNKENSML---------------------------------WNTMISALT 395
                  +L   K++  +                                 WN MIS   
Sbjct: 187 FDGSCQMELDKRKQDGNVVLWNIMIDGQVRLGDIKSAKNLFDEMPQRSVVSWNVMISGYA 246

Query: 396 QHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQ 455
           Q+G+  +AI LF +M  S++ P+ +TL  +L A    G ++ G  +         I  + 
Sbjct: 247 QNGHFIEAINLFQEMQSSNIDPNYVTLVSVLPAIARIGALELG-KWIHLYAGKNKIEIDD 305

Query: 456 EHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNID--------MGR 507
              + L+++ ++ G  D+ +   E +P + ++  W+A+ G   +HG  +        MG+
Sbjct: 306 VLGSALVDMYSKCGSIDEALQVFETLP-KRNAITWSAIIGAFAMHGRAEDAIIHFHLMGK 364

Query: 508 KVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLIN 548
             V       P   A  G+L    SA     LVE+ R   +
Sbjct: 365 AGV------TPNDVAYIGIL----SACSHAGLVEEGRSFFS 395



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 60/291 (20%), Positives = 114/291 (39%), Gaps = 37/291 (12%)

Query: 31  GQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFL 90
           G   EAI+    +    I     TL  +L   A   +L+LGK +HL+    + +     L
Sbjct: 249 GHFIEAINLFQEMQSSNIDPNYVTLVSVLPAIARIGALELGKWIHLYAGKNKIEIDDV-L 307

Query: 91  SNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDV 150
            + L+ MY KCGS  +A +VF+ +P                               +R+ 
Sbjct: 308 GSALVDMYSKCGSIDEALQVFETLP-------------------------------KRNA 336

Query: 151 VSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQ 210
           ++W+ +I  +A  G  E+ +  + ++ +  ++ N+ ++ GIL+ C     ++  R     
Sbjct: 337 ITWSAIIGAFAMHGRAEDAIIHFHLMGKAGVTPNDVAYIGILSACSHAGLVEEGRSFFSH 396

Query: 211 -VLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDAR-DVLTWTTMVSG---YAKLG 265
            V V G    +     +VD   + G L +A  L        D + W  ++     +  L 
Sbjct: 397 MVKVVGLQPRIEHYGCMVDLLGRAGHLEEAEELIRNMPIEPDDVIWKALLGACKMHKNLK 456

Query: 266 DMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPN 316
             E  ++   E+   +  S+  L   Y   G  +    +  +M  + IR +
Sbjct: 457 MGERVAETLMELAPHDSGSYVALSNLYASLGNWEAVARVRLKMKGMDIRKD 507


>gi|449435950|ref|XP_004135757.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g56570-like [Cucumis sativus]
          Length = 606

 Score =  298 bits (764), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 176/555 (31%), Positives = 276/555 (49%), Gaps = 68/555 (12%)

Query: 52  AETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYF-KCGSDVDARKV 110
           A T++ +L+ C   K+L  G   H  L        + ++ N L+ MY   C +  DA  V
Sbjct: 109 AFTMSSVLKACKGMKALSCGALAH-SLATKHGIDRSVYVQNALLDMYAASCATMDDALSV 167

Query: 111 FDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGL 170
           F+ IP+K                                 VSW T+I G+   G    GL
Sbjct: 168 FNDIPLKT-------------------------------AVSWTTLIAGFTHRGDGYSGL 196

Query: 171 KFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAY 230
             ++ +    +  N FSF+     C  +      +Q+H  V   G   +  + +SI+D Y
Sbjct: 197 LAFRQMLLEDVGPNSFSFSIAARACASISSYSCGKQIHAAVTKYGLHCDAPVMNSILDMY 256

Query: 231 AKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIA 290
            +C  L DA+R F                                E+ EKN ++W TLIA
Sbjct: 257 CRCNYLCDAKRCF-------------------------------GELTEKNLITWNTLIA 285

Query: 291 GYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRS 350
           GY R+    ++L LF +M     +PN  TF+S   ACA++  L  G+QVHG ++R  F  
Sbjct: 286 GYERSD-SSESLSLFFQMGSEGYKPNCFTFTSITAACANLAVLSCGQQVHGGIVRRGFDK 344

Query: 351 NTIVMSSLIDMYSKCGCLNDGRQVF-DLTDNKENSMLWNTMISALTQHGYDEQAIRLFHD 409
           N  +++SLIDMY+KCG ++D  ++F D+      S  W TM+     HGY ++A++LF +
Sbjct: 345 NVALINSLIDMYAKCGSISDSHKLFCDMPGRDLVS--WTTMMIGYGAHGYGKEAVKLFDE 402

Query: 410 MVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAG 469
           MV+S ++PD+I    +L  C+H+GLV +GL YF SM  D  I P+QE + C+++LL +AG
Sbjct: 403 MVQSGIQPDRIVFMGVLCGCSHAGLVDKGLKYFRSMLEDYNINPDQEIYRCVVDLLGRAG 462

Query: 470 CSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSS 529
             ++    +E MP+E D  +W AL G C+ +   ++G     +++D+ P  + T+ LLS 
Sbjct: 463 RVEEAFQLVENMPFEPDESVWGALLGACKAYKLSNLGNLAAQRVLDRRPNMAGTYLLLSK 522

Query: 530 IYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQ 589
           IY+A GK     K+R+L+     KKE   SWIEI N+V++F V   + P  + ++ V++ 
Sbjct: 523 IYAAEGKWGEFAKMRKLMKGMNKKKEVGKSWIEIRNEVYSFVVGAKMGPHIEWVHKVIDV 582

Query: 590 LAGQMGEDAPSLDAD 604
           L   M +D    D D
Sbjct: 583 LIWHMKDDGDVTDLD 597



 Score =  159 bits (402), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 120/488 (24%), Positives = 210/488 (43%), Gaps = 75/488 (15%)

Query: 124 NMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISC 183
           N++  Y + G+ + A NLF+ + ERDVV+W  MI+G+       +    +  + R  +  
Sbjct: 48  NLIKSYFDKGLTREACNLFNEIPERDVVTWTAMIVGFTSCNHYHQAWTMFSEMLRSEVQP 107

Query: 184 NEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLF 243
           N F+ + +L  C  ++ L      H      G   +V + ++++D YA            
Sbjct: 108 NAFTMSSVLKACKGMKALSCGALAHSLATKHGIDRSVYVQNALLDMYA------------ 155

Query: 244 DETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALE 303
                             A    M+ A  +FN++P K  VSWTTLIAG+T  G G   L 
Sbjct: 156 ------------------ASCATMDDALSVFNDIPLKTAVSWTTLIAGFTHRGDGYSGLL 197

Query: 304 LFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYS 363
            F +M++  + PN  +FS    ACASI S   GKQ+H  + +     +  VM+S++DMY 
Sbjct: 198 AFRQMLLEDVGPNSFSFSIAARACASISSYSCGKQIHAAVTKYGLHCDAPVMNSILDMYC 257

Query: 364 KCGCLNDGRQVF-DLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITL 422
           +C  L D ++ F +LT+  +N + WNT+I+   +    E ++ LF  M     KP+  T 
Sbjct: 258 RCNYLCDAKRCFGELTE--KNLITWNTLIAGYERSDSSE-SLSLFFQMGSEGYKPNCFTF 314

Query: 423 AVILNACT-----------HSGLVQEGLTYFESMTHDL-------GIIPNQEHHAC---- 460
             I  AC            H G+V+ G     ++ + L       G I +     C    
Sbjct: 315 TSITAACANLAVLSCGQQVHGGIVRRGFDKNVALINSLIDMYAKCGSISDSHKLFCDMPG 374

Query: 461 ---------LIELLAQAGCSD--QLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKV 509
                    +I   A     +  +L +++ +   + D  ++  +   C   G +D G K 
Sbjct: 375 RDLVSWTTMMIGYGAHGYGKEAVKLFDEMVQSGIQPDRIVFMGVLCGCSHAGLVDKGLKY 434

Query: 510 VDQLIDQ---NPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENK 566
              +++    NP       +   +   LG+   VE+  QL+    F+ ++++ W  +   
Sbjct: 435 FRSMLEDYNINPDQE----IYRCVVDLLGRAGRVEEAFQLVENMPFEPDESV-WGALLGA 489

Query: 567 VHAFSVSD 574
             A+ +S+
Sbjct: 490 CKAYKLSN 497



 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 51/177 (28%), Positives = 86/177 (48%), Gaps = 2/177 (1%)

Query: 255 TTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIR 314
           T ++  Y   G    A  LFNE+PE++ V+WT +I G+T      +A  +F+ M+   ++
Sbjct: 47  TNLIKSYFDKGLTREACNLFNEIPERDVVTWTAMIVGFTSCNHYHQAWTMFSEMLRSEVQ 106

Query: 315 PNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMY-SKCGCLNDGRQ 373
           PN  T SS L AC  + +L  G   H    +     +  V ++L+DMY + C  ++D   
Sbjct: 107 PNAFTMSSVLKACKGMKALSCGALAHSLATKHGIDRSVYVQNALLDMYAASCATMDDALS 166

Query: 374 VFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACT 430
           VF+    K  ++ W T+I+  T  G     +  F  M+   V P+  + ++   AC 
Sbjct: 167 VFNDIPLK-TAVSWTTLIAGFTHRGDGYSGLLAFRQMLLEDVGPNSFSFSIAARACA 222



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 49/158 (31%), Positives = 80/158 (50%), Gaps = 8/158 (5%)

Query: 26  SLISKGQLSEAISSLDLLAQ---RGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQ 82
           +LI+  + S++  SL L  Q    G +    T   I   CA    L  G++VH  + + +
Sbjct: 282 TLIAGYERSDSSESLSLFFQMGSEGYKPNCFTFTSITAACANLAVLSCGQQVHGGI-VRR 340

Query: 83  RKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLF 142
                  L N LI MY KCGS  D+ K+F  +P ++L S+  M+ GY   G  K A  LF
Sbjct: 341 GFDKNVALINSLIDMYAKCGSISDSHKLFCDMPGRDLVSWTTMMIGYGAHGYGKEAVKLF 400

Query: 143 DNMAER----DVVSWNTMIIGYAKSGAVEEGLKFYKVL 176
           D M +     D + +  ++ G + +G V++GLK+++ +
Sbjct: 401 DEMVQSGIQPDRIVFMGVLCGCSHAGLVDKGLKYFRSM 438


>gi|224080297|ref|XP_002306087.1| predicted protein [Populus trichocarpa]
 gi|222849051|gb|EEE86598.1| predicted protein [Populus trichocarpa]
          Length = 677

 Score =  298 bits (764), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 166/537 (30%), Positives = 288/537 (53%), Gaps = 8/537 (1%)

Query: 71  GKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVK---NLFSYNNMLS 127
           G+++H ++  T     + F+ + LI MY KCG   +A +VF     +   +L S N M++
Sbjct: 142 GRQLHSYMVKTGNDR-SGFVVSSLIDMYSKCGCFKEACQVFKGCEREGGFDLVSKNAMVA 200

Query: 128 GYANLGMMKHARNLFDNMAE-RDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEF 186
            Y   G M+ A  LF   +E  D VSWNT+I GY ++G   E LK +  +    +  NE 
Sbjct: 201 AYCREGDMEMALRLFWRESELNDSVSWNTLISGYVQNGYPVEALKLFVCMGENGVKWNEH 260

Query: 187 SFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDET 246
           +F  +L+ C  L  LK+ +++H  +L  G  S+  + S IVD Y KCG +  A  L    
Sbjct: 261 TFGSVLSACADLRNLKIGKEMHAWILKNGLGSSAFVESGIVDVYCKCGNMKYAESLHLTR 320

Query: 247 DARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFT 306
             R   + T+M+ GY+  G+M  A +LF+ + EKN + W  L +GY +    +   EL  
Sbjct: 321 GVRSSFSITSMIVGYSSQGNMVEACRLFDSLEEKNSIVWAALFSGYVKLKQCEAFFELLR 380

Query: 307 RMMILRIR-PNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKC 365
             +      P+     +    CA   +L  GKQ+HG++ R     +    +++IDMYSKC
Sbjct: 381 EYIAKEAAIPDALILINAFNVCAFQAALGPGKQIHGYVFRMGIEMDMKTTTAMIDMYSKC 440

Query: 366 GCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVI 425
           G +    ++F L   + + +L+N M++    HG++ +AI LF +M+   V PD +T   +
Sbjct: 441 GSIPYAEKLF-LKVIERDLVLYNVMLAGYAHHGHEIKAINLFQEMLERGVGPDAVTFVAL 499

Query: 426 LNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEH 485
           L+AC H GLV  G   F SMT D  I+P  +H+AC+I+L  +A   ++++  ++++P EH
Sbjct: 500 LSACRHRGLVDLGEKTFYSMTEDYHILPETDHYACMIDLYGRASQLEKMVLFMQRIPVEH 559

Query: 486 -DSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVR 544
            D+ +  A    CR++ N ++ ++  ++L++    S A +  L+++Y+A G    + ++ 
Sbjct: 560 QDAAVVGAFFNACRLNNNTELAKEAEEKLLNIEGDSGARYVQLANVYAAEGNWAEMGRIS 619

Query: 545 QLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQMGEDAPSL 601
           + +  ++ KK    SW+ ++N+VH+F+  D  H   + +YS LE L  ++ E A + 
Sbjct: 620 REMRGKEAKKFAGCSWVYLDNEVHSFTSGDRTHTKAESIYSKLEFLMAELYEIAGAF 676



 Score =  172 bits (437), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 110/352 (31%), Positives = 191/352 (54%), Gaps = 9/352 (2%)

Query: 66  KSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNM 125
           +SLK G   H+   +    T     SN L+ +Y K     +A+K+FD++P +N +S+N +
Sbjct: 2   RSLKDGLMRHVR-SIKSGFTLPILTSNQLVHLYSKHCLINEAQKLFDEMPQRNTYSWNTI 60

Query: 126 LSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEE-GLKFYKVL--RRFSIS 182
           +S +     +  A+++FD+ + RD+V++N+M+ GY      E   L+ +  +  +R  I 
Sbjct: 61  ISAHIKSQNLAQAKSIFDSASVRDLVTYNSMLSGYVSVDGYERNALELFVEMQSKRNEIE 120

Query: 183 CNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRL 242
            ++ +   ++ +  KL      RQ+H  ++ TG   +  + SS++D Y+KCG   +A ++
Sbjct: 121 IDDLTITSMVNLFSKLCNSCYGRQLHSYMVKTGNDRSGFVVSSLIDMYSKCGCFKEACQV 180

Query: 243 F---DETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKN-PVSWTTLIAGYTRNGLG 298
           F   +     D+++   MV+ Y + GDME A +LF    E N  VSW TLI+GY +NG  
Sbjct: 181 FKGCEREGGFDLVSKNAMVAAYCREGDMEMALRLFWRESELNDSVSWNTLISGYVQNGYP 240

Query: 299 QKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSL 358
            +AL+LF  M    ++ N+HTF S L ACA + +LK GK++H ++++    S+  V S +
Sbjct: 241 VEALKLFVCMGENGVKWNEHTFGSVLSACADLRNLKIGKEMHAWILKNGLGSSAFVESGI 300

Query: 359 IDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDM 410
           +D+Y KCG +     +  LT    +S    +MI   +  G   +A RLF  +
Sbjct: 301 VDVYCKCGNMKYAESL-HLTRGVRSSFSITSMIVGYSSQGNMVEACRLFDSL 351



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 81/299 (27%), Positives = 145/299 (48%), Gaps = 15/299 (5%)

Query: 18  NCLIQSFLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLH 77
           N LI  +   +  G   EA+     + + G++    T   +L  CA+ ++LK+GK +H  
Sbjct: 228 NTLISGY---VQNGYPVEALKLFVCMGENGVKWNEHTFGSVLSACADLRNLKIGKEMHAW 284

Query: 78  LKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKH 137
           + L      + F+ + ++ +Y KCG+   A  +     V++ FS  +M+ GY++ G M  
Sbjct: 285 I-LKNGLGSSAFVESGIVDVYCKCGNMKYAESLHLTRGVRSSFSITSMIVGYSSQGNMVE 343

Query: 138 ARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGIL----T 193
           A  LFD++ E++ + W  +  GY K    E    F+++LR +         A IL     
Sbjct: 344 ACRLFDSLEEKNSIVWAALFSGYVKLKQCE---AFFELLREYIAKEAAIPDALILINAFN 400

Query: 194 ICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLT 253
           +C     L   +Q+HG V   G   ++  +++++D Y+KCG +  A +LF +   RD++ 
Sbjct: 401 VCAFQAALGPGKQIHGYVFRMGIEMDMKTTTAMIDMYSKCGSIPYAEKLFLKVIERDLVL 460

Query: 254 WTTMVSGYAKLGDMESASKLFNEMPEK----NPVSWTTLIAGYTRNGLGQKALELFTRM 308
           +  M++GYA  G    A  LF EM E+    + V++  L++     GL     + F  M
Sbjct: 461 YNVMLAGYAHHGHEIKAINLFQEMLERGVGPDAVTFVALLSACRHRGLVDLGEKTFYSM 519


>gi|115463097|ref|NP_001055148.1| Os05g0305300 [Oryza sativa Japonica Group]
 gi|113578699|dbj|BAF17062.1| Os05g0305300 [Oryza sativa Japonica Group]
          Length = 852

 Score =  298 bits (764), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 166/543 (30%), Positives = 291/543 (53%), Gaps = 33/543 (6%)

Query: 58  ILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVK 117
           IL  C   K++   K VH +  +        F+ N LI  Y KCG   +A KVF+ +  K
Sbjct: 233 ILPACGSLKAVPQTKEVHGN-AIRNGTFLDVFVGNALIDAYAKCGLMENAVKVFNMMEFK 291

Query: 118 NLFSYNNMLSGYANLGMMKHARNLFDNMAER----DVVSWNTMIIGYAKSGAVEEGLKFY 173
           ++ S+N M++GY+  G  K A  LF NM +     D+V+W  +I GY++ G   E L  +
Sbjct: 292 DVVSWNAMVAGYSQSGNFKAAFELFKNMRKENIPLDMVTWTAVIAGYSQRGCSHEALNVF 351

Query: 174 KVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKC 233
           + +       N  +   +L+ C  L       ++H   L    L+               
Sbjct: 352 RQMIFSGSLPNCVTIISVLSACASLGAFSQGMEIHAYSLKNCLLT--------------- 396

Query: 234 GELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMP--EKNPVSWTTLIAG 291
             L +     DE    D++ +  ++  Y+K    ++A  +F+++P  E+N V+WT +I G
Sbjct: 397 --LDNDFGGEDE----DLMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGG 450

Query: 292 YTRNGLGQKALELFTRMM--ILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNF- 348
           + + G    AL+LF  M+     + PN +T S  L ACA + +++ GKQ+H +++R +  
Sbjct: 451 HAQYGDSNDALKLFVEMISEPYGVAPNAYTISCILMACAHLAAIRIGKQIHAYVLRHHQY 510

Query: 349 -RSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLF 407
             S   V + LI+MYSKCG ++  R VFD + ++++++ W +M++    HG   +A+ +F
Sbjct: 511 DSSAYFVANCLINMYSKCGDVDTARHVFD-SMSQKSAISWTSMMTGYGMHGRGSEALDIF 569

Query: 408 HDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQ 467
             M ++   PD IT  V+L AC+H G+V +GL+YF+SM+ D G+ P  EH+A  I+LLA+
Sbjct: 570 DKMRKAGFVPDDITFLVVLYACSHCGMVDQGLSYFDSMSADYGLTPRAEHYAYAIDLLAR 629

Query: 468 AGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLL 527
            G  D+    ++ MP E  + +W AL   CR+H N+++    +++L++ N ++  ++ L+
Sbjct: 630 FGRLDKAWKTVKDMPMEPTAVVWVALLSACRVHSNVELAEHALNKLVEMNAENDGSYTLI 689

Query: 528 SSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVL 587
           S+IY+  G+ + V ++R L+ +   KK    SW++ +    +F V D  HP+   +Y++L
Sbjct: 690 SNIYATAGRWKDVARIRHLMKKSGIKKRPGCSWVQGQKGTASFFVGDRSHPLSPQIYALL 749

Query: 588 EQL 590
           E L
Sbjct: 750 ESL 752



 Score =  203 bits (516), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 128/434 (29%), Positives = 214/434 (49%), Gaps = 52/434 (11%)

Query: 28  ISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPT 87
           I +G+L  AI+    + + G RL   TL  +L+ C E  S + G   H  L         
Sbjct: 93  IKQGRLDSAINVSCRMLRAGTRLDHFTLPHVLKACGELPSYRCGSAFH-GLICCNGFESN 151

Query: 88  TFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAE 147
            F+ N L++MY +CGS  +A  +FD+I  + +                            
Sbjct: 152 VFICNALVAMYSRCGSLEEASMIFDEITQRGI---------------------------- 183

Query: 148 RDVVSWNTMIIGYAKSGAVEEGLKFYK--VLRRFSISCNE----FSFAGILTICVKLEEL 201
            DV+SWN+++  + KS      L  +    L       NE     S   IL  C  L+ +
Sbjct: 184 DDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIVNILPACGSLKAV 243

Query: 202 KLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGY 261
             T++VHG  +  G   +V + ++++DAYAKCG + +A ++F+  + +DV++W  MV+GY
Sbjct: 244 PQTKEVHGNAIRNGTFLDVFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVSWNAMVAGY 303

Query: 262 AKLGDMESASKLFNEMPEKN-P---VSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQ 317
           ++ G+ ++A +LF  M ++N P   V+WT +IAGY++ G   +AL +F +M+     PN 
Sbjct: 304 SQSGNFKAAFELFKNMRKENIPLDMVTWTAVIAGYSQRGCSHEALNVFRQMIFSGSLPNC 363

Query: 318 HTFSSCLCACASIVSLKHGKQVHGFLIRTNFRS----------NTIVMSSLIDMYSKCGC 367
            T  S L ACAS+ +   G ++H + ++    +          + +V ++LIDMYSKC  
Sbjct: 364 VTIISVLSACASLGAFSQGMEIHAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCRS 423

Query: 368 LNDGRQVF-DLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRS--SVKPDKITLAV 424
               R +F D+   + N + W  MI    Q+G    A++LF +M+     V P+  T++ 
Sbjct: 424 FKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEPYGVAPNAYTISC 483

Query: 425 ILNACTHSGLVQEG 438
           IL AC H   ++ G
Sbjct: 484 ILMACAHLAAIRIG 497



 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 87/339 (25%), Positives = 157/339 (46%), Gaps = 42/339 (12%)

Query: 125 MLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCN 184
           +++ Y   G   +A  + + +     V WN +I  + K G ++  +     + R     +
Sbjct: 57  VVASYLACGATDYALLVLERVTPSPAVWWNLLIREHIKQGRLDSAINVSCRMLRAGTRLD 116

Query: 185 EFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFD 244
            F+   +L  C +L   +     HG +   GF SNV I +++V  Y++CG L +A  +FD
Sbjct: 117 HFTLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSLEEASMIFD 176

Query: 245 ETDAR---DVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKA 301
           E   R   DV++W ++VS + K  +                 +WT              A
Sbjct: 177 EITQRGIDDVISWNSIVSAHVKSSN-----------------AWT--------------A 205

Query: 302 LELFTRM-MILRIRPNQH-----TFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVM 355
           L+LF++M +I+  +P        +  + L AC S+ ++   K+VHG  IR     +  V 
Sbjct: 206 LDLFSKMTLIVHEKPTNERSDIISIVNILPACGSLKAVPQTKEVHGNAIRNGTFLDVFVG 265

Query: 356 SSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSV 415
           ++LID Y+KCG + +  +VF++ + K+  + WN M++  +Q G  + A  LF +M + ++
Sbjct: 266 NALIDAYAKCGLMENAVKVFNMMEFKD-VVSWNAMVAGYSQSGNFKAAFELFKNMRKENI 324

Query: 416 KPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPN 454
             D +T   ++   +  G   E L  F  M    G +PN
Sbjct: 325 PLDMVTWTAVIAGYSQRGCSHEALNVFRQMIFS-GSLPN 362



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 72/314 (22%), Positives = 126/314 (40%), Gaps = 34/314 (10%)

Query: 255 TTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIR 314
           T +V+ Y   G  + A  +   +     V W  LI  + + G    A+ +  RM+    R
Sbjct: 55  TGVVASYLACGATDYALLVLERVTPSPAVWWNLLIREHIKQGRLDSAINVSCRMLRAGTR 114

Query: 315 PNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQV 374
            +  T    L AC  + S + G   HG +    F SN  + ++L+ MYS+CG L +   +
Sbjct: 115 LDHFTLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSLEEASMI 174

Query: 375 FDLTDNK--ENSMLWNTMISALTQHGYDEQAIRLFHDMV------RSSVKPDKITLAVIL 426
           FD    +  ++ + WN+++SA  +      A+ LF  M        ++ + D I++  IL
Sbjct: 175 FDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIVNIL 234

Query: 427 NAC-----------THSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLM 475
            AC            H   ++ G T+ +    +            LI+  A+ G  +  +
Sbjct: 235 PACGSLKAVPQTKEVHGNAIRNG-TFLDVFVGN-----------ALIDAYAKCGLMENAV 282

Query: 476 NQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQN-PQSSATHGLLSSIYSAL 534
                M ++ D   WNA+       GN     ++   +  +N P    T   + + YS  
Sbjct: 283 KVFNMMEFK-DVVSWNAMVAGYSQSGNFKAAFELFKNMRKENIPLDMVTWTAVIAGYSQR 341

Query: 535 GKGRLVEKV-RQLI 547
           G       V RQ+I
Sbjct: 342 GCSHEALNVFRQMI 355


>gi|449487105|ref|XP_004157498.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
          Length = 555

 Score =  298 bits (764), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 161/516 (31%), Positives = 297/516 (57%), Gaps = 21/516 (4%)

Query: 99  FKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMII 158
           F+  + + A+ V      KN +  N++LS Y + G +  A+ +F+++       WN +I 
Sbjct: 40  FRNLAKIHAQIVVSGFSQKN-YILNHLLSLYISFGSLGSAQKVFEDITAPSTTVWNQIIK 98

Query: 159 GYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLS 218
           G+ +S   ++ ++ +K +    +  N F+++ +L+ CV+    +   Q+HG+VLV G+ S
Sbjct: 99  GHTRSKTSKKSIELFKRMTLAGVEANGFTYSFLLSACVRSRLFREGEQIHGRVLVNGYWS 158

Query: 219 NVVISSSIVDAYAKCGELSD-----ARRLFDETDARDVLTWTTMVSGYAKLGDMESASKL 273
           N+ + +++++ YA  G+  D     AR LFDE    +V+ W ++++GY + GD + A K+
Sbjct: 159 NLYVRTNLINLYANGGDGGDFDLKRARYLFDEMPDSNVVGWNSLLAGYVRRGDFDGARKV 218

Query: 274 FNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSL 333
           F+EMPE+N  +WT ++AG+ +NG  + AL LF +M    +  +Q    + L ACA +  L
Sbjct: 219 FDEMPERNVRTWTIMVAGFAQNGQCKLALSLFDQMRRAGVELDQVALVAALSACAELGDL 278

Query: 334 KHGKQVHGFLIRTNFRSNTIVM-----SSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWN 388
             GK +HG++ RT +RS  + +     ++LI MY+ CG ++   +VF+    + N++ W+
Sbjct: 279 TLGKWIHGYVERT-WRSRHLPVLVSLNNALIHMYASCGVMDLAYKVFEEIPQR-NTVSWS 336

Query: 389 TMISALTQHGYDEQAIRLFHDMV---RSSVKPDKITLAVILNACTHSGLVQEGLTYFESM 445
           ++I+   + G   +AIR+F  M+   ++ V+PD+IT    L AC+H+GL+ +G+  F+SM
Sbjct: 337 SIITGFAKQGCGVEAIRIFQLMLCSGQNEVRPDEITFIGALTACSHAGLISDGIRLFQSM 396

Query: 446 THDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDM 505
               G+IP  EH+ C+++LL++AG   + ++ +E MP + ++ +W AL   CR+H N ++
Sbjct: 397 HKTFGVIPQIEHYGCMVDLLSRAGLLTEALSLIESMPMKPNNAVWGALLSGCRLHKNDEI 456

Query: 506 GRKVVDQL---IDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIE 562
              V   L   I  N Q++    LL+++Y+A G+ +    VR+ +++   KK    SWIE
Sbjct: 457 VSHVAKHLSFEIHPNNQAAGYFMLLANVYAADGRWQDTATVRRNMHDIGVKKPSGRSWIE 516

Query: 563 IENKVHAFSVSDSLHPMRDVLYSVLEQLA--GQMGE 596
           I   + +F V +  H   +++Y +L  +    QMGE
Sbjct: 517 INGVLCSFMVGEETHKDVNLIYEMLGNITRQTQMGE 552



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 89/369 (24%), Positives = 176/369 (47%), Gaps = 47/369 (12%)

Query: 47  GIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVD 106
           G+     T +F+L  C  S+  + G+++H  + L        ++  +LI++Y   G   D
Sbjct: 120 GVEANGFTYSFLLSACVRSRLFREGEQIHGRV-LVNGYWSNLYVRTNLINLYANGGDGGD 178

Query: 107 -----ARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYA 161
                AR +FD++P  N+  +N++L+GY   G    AR +FD M ER+V +W  M+ G+A
Sbjct: 179 FDLKRARYLFDEMPDSNVVGWNSLLAGYVRRGDFDGARKVFDEMPERNVRTWTIMVAGFA 238

Query: 162 KSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSN-- 219
           ++G  +  L  +  +RR  +  ++ +    L+ C +L +L L + +HG V  T    +  
Sbjct: 239 QNGQCKLALSLFDQMRRAGVELDQVALVAALSACAELGDLTLGKWIHGYVERTWRSRHLP 298

Query: 220 --VVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEM 277
             V ++++++  YA CG +  A ++F+E   R+ ++W+++++G+AK G    A ++F  M
Sbjct: 299 VLVSLNNALIHMYASCGVMDLAYKVFEEIPQRNTVSWSSIITGFAKQGCGVEAIRIFQLM 358

Query: 278 PEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGK 337
                     L +G                     +RP++ TF   L AC+    +  G 
Sbjct: 359 ----------LCSGQN------------------EVRPDEITFIGALTACSHAGLISDGI 390

Query: 338 QVHGFLIRTNFRSNTIV-----MSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMIS 392
           +    L ++  ++  ++        ++D+ S+ G L +   + +    K N+ +W  ++S
Sbjct: 391 R----LFQSMHKTFGVIPQIEHYGCMVDLLSRAGLLTEALSLIESMPMKPNNAVWGALLS 446

Query: 393 ALTQHGYDE 401
               H  DE
Sbjct: 447 GCRLHKNDE 455



 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 56/205 (27%), Positives = 96/205 (46%), Gaps = 23/205 (11%)

Query: 31  GQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLT--QRKTPTT 88
           GQ   A+S  D + + G+ L    L   L  CAE   L LGK +H +++ T   R  P  
Sbjct: 241 GQCKLALSLFDQMRRAGVELDQVALVAALSACAELGDLTLGKWIHGYVERTWRSRHLPVL 300

Query: 89  F-LSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLF----- 142
             L+N LI MY  CG    A KVF++IP +N  S++++++G+A  G    A  +F     
Sbjct: 301 VSLNNALIHMYASCGVMDLAYKVFEEIPQRNTVSWSSIITGFAKQGCGVEAIRIFQLMLC 360

Query: 143 --DNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRR----------FSISCNEFSFAG 190
              N    D +++   +   + +G + +G++ ++ + +          +    +  S AG
Sbjct: 361 SGQNEVRPDEITFIGALTACSHAGLISDGIRLFQSMHKTFGVIPQIEHYGCMVDLLSRAG 420

Query: 191 ILTICVKLEE---LKLTRQVHGQVL 212
           +LT  + L E   +K    V G +L
Sbjct: 421 LLTEALSLIESMPMKPNNAVWGALL 445


>gi|115478174|ref|NP_001062682.1| Os09g0251500 [Oryza sativa Japonica Group]
 gi|47848472|dbj|BAD22327.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|47848643|dbj|BAD22491.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113630915|dbj|BAF24596.1| Os09g0251500 [Oryza sativa Japonica Group]
 gi|215767397|dbj|BAG99625.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 877

 Score =  298 bits (764), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 181/598 (30%), Positives = 297/598 (49%), Gaps = 71/598 (11%)

Query: 13  KNLPNNCLIQSFLSLIS----KGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSL 68
           + +P++ ++ S+ +LIS     G    AI  L  +   G+      L+ IL+ CA + + 
Sbjct: 261 EKMPDSDVV-SWNALISGCVLNGHDHRAIELLLQMKSSGLVPNVFMLSSILKACAGAGAF 319

Query: 69  KLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSG 128
            LG+++H                        K  +D D     D I V        ++  
Sbjct: 320 DLGRQIH--------------------GFMIKANADSD-----DYIGV-------GLVDM 347

Query: 129 YANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSF 188
           YA    +  A  +FD M+ RD++ WN +I G +  G  +E    +  LR+  +  N  + 
Sbjct: 348 YAKNHFLDDAMKVFDWMSHRDLILWNALISGCSHGGRHDEAFSIFYGLRKEGLGVNRTTL 407

Query: 189 AGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDA 248
           A +L     LE    TRQVH      GF+ +  + + ++D+Y KC  LSDA R+F+E  +
Sbjct: 408 AAVLKSTASLEAASATRQVHALAEKIGFIFDAHVVNGLIDSYWKCSCLSDAIRVFEECSS 467

Query: 249 RDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRM 308
            D+                               ++ T++I   ++   G+ A++LF  M
Sbjct: 468 GDI-------------------------------IAVTSMITALSQCDHGEGAIKLFMEM 496

Query: 309 MILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCL 368
           +   + P+    SS L ACAS+ + + GKQVH  LI+  F S+    ++L+  Y+KCG +
Sbjct: 497 LRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAHLIKRQFMSDAFAGNALVYTYAKCGSI 556

Query: 369 NDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNA 428
            D    F     +   + W+ MI  L QHG+ ++A+ LF  MV   + P+ IT+  +L A
Sbjct: 557 EDAELAFSSLPER-GVVSWSAMIGGLAQHGHGKRALELFGRMVDEGINPNHITMTSVLCA 615

Query: 429 CTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSY 488
           C H+GLV E   YF SM    GI   +EH++C+I+LL +AG  D  M  +  MP++ ++ 
Sbjct: 616 CNHAGLVDEAKRYFNSMKEMFGIDRTEEHYSCMIDLLGRAGKLDDAMELVNSMPFQANAS 675

Query: 489 LWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLIN 548
           +W AL G  R+H + ++G+   ++L    P+ S TH LL++ Y++ G    V KVR+L+ 
Sbjct: 676 VWGALLGASRVHKDPELGKLAAEKLFILEPEKSGTHVLLANTYASSGMWNEVAKVRKLMK 735

Query: 549 ERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQMGEDA--PSLDAD 604
           +   KKE A+SW+E+++KVH F V D  HPM   +YS L++L   M +    P++D D
Sbjct: 736 DSNIKKEPAMSWVEVKDKVHTFIVGDKSHPMTKEIYSKLDELGDLMSKAGYIPNVDVD 793



 Score =  160 bits (406), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 90/312 (28%), Positives = 154/312 (49%), Gaps = 33/312 (10%)

Query: 118 NLFSYNNMLSGYANLGMMKHARNLFDNM-AERDVVSWNTMIIGYAKSGAVEEGLKFYKVL 176
           ++F  N +++ Y   G M  AR +FD   +ER+ VSWN ++  Y K+    + ++ +  +
Sbjct: 134 DVFVANALVAMYGGFGFMDDARRVFDEAGSERNAVSWNGLMSAYVKNDQCGDAIQVFGEM 193

Query: 177 RRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGEL 236
               I   EF F+ ++  C     +   RQVH  V+  G+                    
Sbjct: 194 VWSGIQPTEFGFSCVVNACTGSRNIDAGRQVHAMVVRMGY-------------------- 233

Query: 237 SDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNG 296
                       +DV T   +V  Y K+G ++ AS +F +MP+ + VSW  LI+G   NG
Sbjct: 234 -----------EKDVFTANALVDMYVKMGRVDIASVIFEKMPDSDVVSWNALISGCVLNG 282

Query: 297 LGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMS 356
              +A+EL  +M    + PN    SS L ACA   +   G+Q+HGF+I+ N  S+  +  
Sbjct: 283 HDHRAIELLLQMKSSGLVPNVFMLSSILKACAGAGAFDLGRQIHGFMIKANADSDDYIGV 342

Query: 357 SLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVK 416
            L+DMY+K   L+D  +VFD   +++  +LWN +IS  +  G  ++A  +F+ + +  + 
Sbjct: 343 GLVDMYAKNHFLDDAMKVFDWMSHRD-LILWNALISGCSHGGRHDEAFSIFYGLRKEGLG 401

Query: 417 PDKITLAVILNA 428
            ++ TLA +L +
Sbjct: 402 VNRTTLAAVLKS 413



 Score =  153 bits (386), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 128/546 (23%), Positives = 233/546 (42%), Gaps = 75/546 (13%)

Query: 5   FSPRGINRKNLPNNCLIQSFLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAE 64
           F   G  R  +  N L+ ++   +   Q  +AI     +   GI+      + ++  C  
Sbjct: 158 FDEAGSERNAVSWNGLMSAY---VKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTG 214

Query: 65  SKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNN 124
           S+++  G++VH                    +M  + G +            K++F+ N 
Sbjct: 215 SRNIDAGRQVH--------------------AMVVRMGYE------------KDVFTANA 242

Query: 125 MLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCN 184
           ++  Y  +G +  A  +F+ M + DVVSWN +I G   +G     ++    ++   +  N
Sbjct: 243 LVDMYVKMGRVDIASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQMKSSGLVPN 302

Query: 185 EFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFD 244
            F  + IL  C       L RQ+HG ++     S+  I   +VD YAK   L DA ++FD
Sbjct: 303 VFMLSSILKACAGAGAFDLGRQIHGFMIKANADSDDYIGVGLVDMYAKNHFLDDAMKVFD 362

Query: 245 ETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALEL 304
               RD++ W  ++SG +  G  + A  +F                G  + GLG      
Sbjct: 363 WMSHRDLILWNALISGCSHGGRHDEAFSIFY---------------GLRKEGLGV----- 402

Query: 305 FTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSK 364
                      N+ T ++ L + AS+ +    +QVH    +  F  +  V++ LID Y K
Sbjct: 403 -----------NRTTLAAVLKSTASLEAASATRQVHALAEKIGFIFDAHVVNGLIDSYWK 451

Query: 365 CGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAV 424
           C CL+D  +VF+   + +   +  +MI+AL+Q  + E AI+LF +M+R  ++PD   L+ 
Sbjct: 452 CSCLSDAIRVFEECSSGDIIAV-TSMITALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSS 510

Query: 425 ILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYE 484
           +LNAC      ++G      +      + +      L+   A+ G  +        +P E
Sbjct: 511 LLNACASLSAYEQGKQVHAHLIKRQ-FMSDAFAGNALVYTYAKCGSIEDAELAFSSLP-E 568

Query: 485 HDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQ--NPQSSATHGLLSSIYSALGKGRLVEK 542
                W+A+ G    HG+     ++  +++D+  NP     H  ++S+  A     LV++
Sbjct: 569 RGVVSWSAMIGGLAQHGHGKRALELFGRMVDEGINPN----HITMTSVLCACNHAGLVDE 624

Query: 543 VRQLIN 548
            ++  N
Sbjct: 625 AKRYFN 630



 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 119/458 (25%), Positives = 199/458 (43%), Gaps = 80/458 (17%)

Query: 52  AETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVF 111
           A T++  L + A +++L  G   HLH  L +     + L NHLIS Y KC     AR+VF
Sbjct: 4   AGTISQQLTRYAAAQALLPG--AHLHANLLKSGFLAS-LRNHLISFYSKCRRPCCARRVF 60

Query: 112 DKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLK 171
                                          D + +   VSW++++  Y+ +G     ++
Sbjct: 61  -------------------------------DEIPDPCHVSWSSLVTAYSNNGLPRSAIQ 89

Query: 172 FYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYA 231
            +  +R   + CNEF+   +L  CV   + +L  QVH   + TGF S+V +++++V  Y 
Sbjct: 90  AFHGMRAEGVCCNEFALPVVLK-CVP--DAQLGAQVHAMAMATGFGSDVFVANALVAMYG 146

Query: 232 KCGELSDARRLFDETDA-RDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIA 290
             G + DARR+FDE  + R+ ++W  ++S Y K                           
Sbjct: 147 GFGFMDDARRVFDEAGSERNAVSWNGLMSAYVK--------------------------- 179

Query: 291 GYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRS 350
               N     A+++F  M+   I+P +  FS  + AC    ++  G+QVH  ++R  +  
Sbjct: 180 ----NDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIDAGRQVHAMVVRMGYEK 235

Query: 351 NTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDM 410
           +    ++L+DMY K G ++    +F+   + +  + WN +IS    +G+D +AI L   M
Sbjct: 236 DVFTANALVDMYVKMGRVDIASVIFEKMPDSD-VVSWNALISGCVLNGHDHRAIELLLQM 294

Query: 411 VRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHH----ACLIELLA 466
             S + P+   L+ IL AC  +G    G        H   I  N +        L+++ A
Sbjct: 295 KSSGLVPNVFMLSSILKACAGAGAFDLG-----RQIHGFMIKANADSDDYIGVGLVDMYA 349

Query: 467 QAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNID 504
           +    D  M   + M +  D  LWNAL   C   G  D
Sbjct: 350 KNHFLDDAMKVFDWMSHR-DLILWNALISGCSHGGRHD 386


>gi|125537150|gb|EAY83638.1| hypothetical protein OsI_38867 [Oryza sativa Indica Group]
          Length = 914

 Score =  298 bits (764), Expect = 5e-78,   Method: Compositional matrix adjust.
 Identities = 161/524 (30%), Positives = 269/524 (51%), Gaps = 60/524 (11%)

Query: 118 NLFSYNNMLSGYANLGMMKHARNLFDNMAE--RDVVSWNTMIIGYAKSGAVEEGLKFYKV 175
           N  +   ++S YA L ++  +R +FD + +   D    NTM+  YA  GA  + L  +  
Sbjct: 383 NPRAAARLVSAYALLRLLPSSRRVFDAIRDPHADAFLANTMLRAYALGGAPRDALAAFSA 442

Query: 176 LRR-----FSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAY 230
           + R     +S      S AG+  +          R VH  V+  G + +  + ++++DAY
Sbjct: 443 MPRRDSFTYSFLIKALSAAGVAPV----------RAVHSHVVKLGSVEDTFVGNALIDAY 492

Query: 231 AKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIA 290
           +K G  SDAR++FDE   RDV++W T ++   + G++  A KLF+EMPEK+ VSW T++ 
Sbjct: 493 SKNGGFSDARKVFDEMPERDVVSWNTAMAAMVREGELAGARKLFDEMPEKDTVSWNTILD 552

Query: 291 GYTRNGLGQKALELFTRM-------------------------MILRIRPNQHTFS---- 321
           GYT+ G  + A ELF RM                         +I    P ++  +    
Sbjct: 553 GYTKAGEVEAAFELFQRMPERNVVSWSTMVSGYCKKGDLEMARVIFDKMPGKNLVTWTIM 612

Query: 322 --------------SCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGC 367
                         S L ACA   SL  GK++H ++ + N   +T V ++LIDM+ KCGC
Sbjct: 613 MKEASVELDVAAVVSILAACAESGSLSLGKRIHRYVRKRNLGRSTHVCNALIDMFCKCGC 672

Query: 368 LNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILN 427
           +N    VFD    +++S+ WN++I     HG+ ++A+ LF  M +    PD +T+  +L+
Sbjct: 673 VNRADYVFDTETVQKDSVSWNSIIGGFAMHGHGDKALELFAQMKQQGFNPDAVTMINVLS 732

Query: 428 ACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDS 487
           ACTH G V EG  YF +M  D GI+P  EH+ C+I+LL + G   + ++ ++ MP+E + 
Sbjct: 733 ACTHMGFVDEGRRYFSNMERDYGIMPQIEHYGCMIDLLGRGGLIKEAVDLIKSMPWEPNE 792

Query: 488 YLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLI 547
            +W +L   CR+H N++     V++L    P ++  + +LS+IY+  G+   + K R  +
Sbjct: 793 VIWGSLLSACRLHKNVEYAEIAVNELSKLQPSNAGNYAVLSNIYAEAGQWSDMAKARMQM 852

Query: 548 NERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLA 591
                +K    SW+E+    H F+V D  H   D +  ++++L+
Sbjct: 853 KGTGSQKTAGSSWVELNETFHEFTVGDRKHQDSDQISEMVDRLS 896



 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 93/333 (27%), Positives = 166/333 (49%), Gaps = 32/333 (9%)

Query: 88  TFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAE 147
           TF+ N LI  Y K G   DARKVFD++P +++ S+N  ++     G +  AR LFD M E
Sbjct: 482 TFVGNALIDAYSKNGGFSDARKVFDEMPERDVVSWNTAMAAMVREGELAGARKLFDEMPE 541

Query: 148 RDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTR-- 205
           +D VSWNT++ GY K+G VE   + ++ +   ++     S++ +++   K  +L++ R  
Sbjct: 542 KDTVSWNTILDGYTKAGEVEAAFELFQRMPERNV----VSWSTMVSGYCKKGDLEMARVI 597

Query: 206 --QVHGQVLVTGFLS--------NVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWT 255
             ++ G+ LVT  +         +V    SI+ A A+ G LS  +R+      R++   T
Sbjct: 598 FDKMPGKNLVTWTIMMKEASVELDVAAVVSILAACAESGSLSLGKRIHRYVRKRNLGRST 657

Query: 256 ----TMVSGYAKLGDMESASKLFN-EMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMI 310
                ++  + K G +  A  +F+ E  +K+ VSW ++I G+  +G G KALELF +M  
Sbjct: 658 HVCNALIDMFCKCGCVNRADYVFDTETVQKDSVSWNSIIGGFAMHGHGDKALELFAQMKQ 717

Query: 311 LRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSS------LIDMYSK 364
               P+  T  + L AC  +  +  G++       +N   +  +M        +ID+  +
Sbjct: 718 QGFNPDAVTMINVLSACTHMGFVDEGRRYF-----SNMERDYGIMPQIEHYGCMIDLLGR 772

Query: 365 CGCLNDGRQVFDLTDNKENSMLWNTMISALTQH 397
            G + +   +      + N ++W +++SA   H
Sbjct: 773 GGLIKEAVDLIKSMPWEPNEVIWGSLLSACRLH 805



 Score = 80.5 bits (197), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 65/243 (26%), Positives = 107/243 (44%), Gaps = 43/243 (17%)

Query: 205 RQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFD--ETDARDVLTWTTMVSGYA 262
           R++H QVL  G   N   ++ +V AYA    L  +RR+FD       D     TM+  YA
Sbjct: 369 RELHAQVLKQGLHLNPRAAARLVSAYALLRLLPSSRRVFDAIRDPHADAFLANTMLRAYA 428

Query: 263 KLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSS 322
             G    A   F+ MP ++  +++ LI          KAL                    
Sbjct: 429 LGGAPRDALAAFSAMPRRDSFTYSFLI----------KAL-------------------- 458

Query: 323 CLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKE 382
              + A +  +   + VH  +++     +T V ++LID YSK G  +D R+VFD    + 
Sbjct: 459 ---SAAGVAPV---RAVHSHVVKLGSVEDTFVGNALIDAYSKNGGFSDARKVFDEMPER- 511

Query: 383 NSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYF 442
           + + WNT ++A+ + G    A +LF +M     + D ++   IL+  T +G V+     F
Sbjct: 512 DVVSWNTAMAAMVREGELAGARKLFDEM----PEKDTVSWNTILDGYTKAGEVEAAFELF 567

Query: 443 ESM 445
           + M
Sbjct: 568 QRM 570



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 44/142 (30%), Positives = 73/142 (51%), Gaps = 6/142 (4%)

Query: 42  LLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKC 101
           ++ +  + L    +  IL  CAES SL LGKR+H +++  +    +T + N LI M+ KC
Sbjct: 612 MMKEASVELDVAAVVSILAACAESGSLSLGKRIHRYVR-KRNLGRSTHVCNALIDMFCKC 670

Query: 102 GSDVDARKVFDKIPV-KNLFSYNNMLSGYANLGMMKHARNLFDNMAER----DVVSWNTM 156
           G    A  VFD   V K+  S+N+++ G+A  G    A  LF  M ++    D V+   +
Sbjct: 671 GCVNRADYVFDTETVQKDSVSWNSIIGGFAMHGHGDKALELFAQMKQQGFNPDAVTMINV 730

Query: 157 IIGYAKSGAVEEGLKFYKVLRR 178
           +      G V+EG +++  + R
Sbjct: 731 LSACTHMGFVDEGRRYFSNMER 752


>gi|222631044|gb|EEE63176.1| hypothetical protein OsJ_17985 [Oryza sativa Japonica Group]
          Length = 745

 Score =  298 bits (764), Expect = 5e-78,   Method: Compositional matrix adjust.
 Identities = 173/576 (30%), Positives = 301/576 (52%), Gaps = 42/576 (7%)

Query: 34  SEAISSLDLLAQRGI---------RLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRK 84
           S A ++LDL ++  +         R    ++  IL  C   K++   K VH +  +    
Sbjct: 93  SNAWTALDLFSKMTLIVHEKPTNERSDIISIVNILPACGSLKAVPQTKEVHGN-AIRNGT 151

Query: 85  TPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDN 144
               F+ N LI  Y KCG   +A KVF+ +  K++ S+N M++GY+  G  K A  LF N
Sbjct: 152 FLDVFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVSWNAMVAGYSQSGNFKAAFELFKN 211

Query: 145 MAER----DVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEE 200
           M +     D+V+W  +I GY++ G   E L  ++ +       N  +   +L+ C  L  
Sbjct: 212 MRKENIPLDMVTWTAVIAGYSQRGCSHEALNVFRQMIFSGSLPNCVTIISVLSACASLGA 271

Query: 201 LKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSG 260
                ++H   L    L+                 L +     DE    D++ +  ++  
Sbjct: 272 FSQGMEIHAYSLKNCLLT-----------------LDNDFGGEDE----DLMVYNALIDM 310

Query: 261 YAKLGDMESASKLFNEMP--EKNPVSWTTLIAGYTRNGLGQKALELFTRMM--ILRIRPN 316
           Y+K    ++A  +F+++P  E+N V+WT +I G+ + G    AL+LF  M+     + PN
Sbjct: 311 YSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEPYGVAPN 370

Query: 317 QHTFSSCLCACASIVSLKHGKQVHGFLIRTNF--RSNTIVMSSLIDMYSKCGCLNDGRQV 374
            +T S  L ACA + +++ GKQ+H +++R +    S   V + LI+MYSKCG ++  R V
Sbjct: 371 AYTISCILMACAHLAAIRIGKQIHAYVLRHHQYDSSAYFVANCLINMYSKCGDVDTARHV 430

Query: 375 FDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGL 434
           FD    K +++ W +M++    HG   +A+ +F  M ++   PD IT  V+L AC+H G+
Sbjct: 431 FDSMSQK-SAISWTSMMTGYGMHGRGSEALDIFDKMRKAGFVPDDITFLVVLYACSHCGM 489

Query: 435 VQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALH 494
           V +GL+YF+SM+ D G+ P  EH+A  I+LLA+ G  D+    ++ MP E  + +W AL 
Sbjct: 490 VDQGLSYFDSMSADYGLTPRAEHYAYAIDLLARFGRLDKAWKTVKDMPMEPTAVVWVALL 549

Query: 495 GVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKK 554
             CR+H N+++    +++L++ N ++  ++ L+S+IY+  G+ + V ++R L+ +   KK
Sbjct: 550 SACRVHSNVELAEHALNKLVEMNAENDGSYTLISNIYATAGRWKDVARIRHLMKKSGIKK 609

Query: 555 EQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQL 590
               SW++ +    +F V D  HP+   +Y++LE L
Sbjct: 610 RPGCSWVQGQKGTASFFVGDRSHPLSPQIYALLESL 645



 Score =  197 bits (501), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 123/419 (29%), Positives = 206/419 (49%), Gaps = 52/419 (12%)

Query: 43  LAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCG 102
           + + G RL   TL  +L+ C E  S + G   H  L          F+ N L++MY +CG
Sbjct: 1   MLRAGTRLDHFTLPHVLKACGELPSYRCGSAFH-GLICCNGFESNVFICNALVAMYSRCG 59

Query: 103 SDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAK 162
           S  +A  +FD+I  + +                             DV+SWN+++  + K
Sbjct: 60  SLEEASMIFDEITQRGI----------------------------DDVISWNSIVSAHVK 91

Query: 163 SGAVEEGLKFYK--VLRRFSISCNE----FSFAGILTICVKLEELKLTRQVHGQVLVTGF 216
           S      L  +    L       NE     S   IL  C  L+ +  T++VHG  +  G 
Sbjct: 92  SSNAWTALDLFSKMTLIVHEKPTNERSDIISIVNILPACGSLKAVPQTKEVHGNAIRNGT 151

Query: 217 LSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNE 276
             +V + ++++DAYAKCG + +A ++F+  + +DV++W  MV+GY++ G+ ++A +LF  
Sbjct: 152 FLDVFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVSWNAMVAGYSQSGNFKAAFELFKN 211

Query: 277 MPEKN-P---VSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVS 332
           M ++N P   V+WT +IAGY++ G   +AL +F +M+     PN  T  S L ACAS+ +
Sbjct: 212 MRKENIPLDMVTWTAVIAGYSQRGCSHEALNVFRQMIFSGSLPNCVTIISVLSACASLGA 271

Query: 333 LKHGKQVHGFLIRTNFRS----------NTIVMSSLIDMYSKCGCLNDGRQVF-DLTDNK 381
              G ++H + ++    +          + +V ++LIDMYSKC      R +F D+   +
Sbjct: 272 FSQGMEIHAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCRSFKAARSIFDDIPLEE 331

Query: 382 ENSMLWNTMISALTQHGYDEQAIRLFHDMVRS--SVKPDKITLAVILNACTHSGLVQEG 438
            N + W  MI    Q+G    A++LF +M+     V P+  T++ IL AC H   ++ G
Sbjct: 332 RNVVTWTVMIGGHAQYGDSNDALKLFVEMISEPYGVAPNAYTISCILMACAHLAAIRIG 390



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 60/261 (22%), Positives = 105/261 (40%), Gaps = 34/261 (13%)

Query: 308 MMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGC 367
           M+    R +  T    L AC  + S + G   HG +    F SN  + ++L+ MYS+CG 
Sbjct: 1   MLRAGTRLDHFTLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGS 60

Query: 368 LNDGRQVFDLTDNK--ENSMLWNTMISALTQHGYDEQAIRLFHDMV------RSSVKPDK 419
           L +   +FD    +  ++ + WN+++SA  +      A+ LF  M        ++ + D 
Sbjct: 61  LEEASMIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDI 120

Query: 420 ITLAVILNAC-----------THSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQA 468
           I++  IL AC            H   ++ G T+ +    +            LI+  A+ 
Sbjct: 121 ISIVNILPACGSLKAVPQTKEVHGNAIRNG-TFLDVFVGN-----------ALIDAYAKC 168

Query: 469 GCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQN-PQSSATHGLL 527
           G  +  +     M ++ D   WNA+       GN     ++   +  +N P    T   +
Sbjct: 169 GLMENAVKVFNMMEFK-DVVSWNAMVAGYSQSGNFKAAFELFKNMRKENIPLDMVTWTAV 227

Query: 528 SSIYSALGKGRLVEKV-RQLI 547
            + YS  G       V RQ+I
Sbjct: 228 IAGYSQRGCSHEALNVFRQMI 248


>gi|224120094|ref|XP_002331135.1| predicted protein [Populus trichocarpa]
 gi|222872863|gb|EEF09994.1| predicted protein [Populus trichocarpa]
          Length = 799

 Score =  298 bits (764), Expect = 5e-78,   Method: Compositional matrix adjust.
 Identities = 187/632 (29%), Positives = 303/632 (47%), Gaps = 111/632 (17%)

Query: 16  PNNCLIQSFL--SLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKR 73
           P N ++ + L  +    G   EAI     +   GI     T  F+L+ C+  K    G+ 
Sbjct: 81  PKNVVLWNLLIRAYAWNGPYEEAIDLYYKMLGYGITPNRFTFPFVLKACSALKEASEGRE 140

Query: 74  VHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLG 133
           +H  +K   R     ++S  L+  Y KCG                               
Sbjct: 141 IHCDIK-RLRLESNVYVSTALVDFYAKCGC------------------------------ 169

Query: 134 MMKHARNLFDNMAERDVVSWNTMIIGYA-KSGAVEEGLKFYKVLRRFSISCNEFSFAGIL 192
            +  A+ +FD M +RDVV+WN+MI G++   G+ +E  +    ++   +S N  +  G+L
Sbjct: 170 -LDDAKEVFDKMHKRDVVAWNSMISGFSLHEGSYDEVARLLVQMQN-DVSPNSSTIVGVL 227

Query: 193 TICVKLEELKLTRQVHGQVLVTGFLSNVVIS----------------------------- 223
               ++  L+  +++HG  +  GF+ +VV+                              
Sbjct: 228 PAVAQVNSLRHGKEIHGFCVRRGFVGDVVVGTGILDVYGKCQCIDYARRIFDMMGIVKNE 287

Query: 224 ---SSIVDAYAKCGELSDARRLFDE--------------------------TD------- 247
              S++V AY  C  + +A  LF +                          TD       
Sbjct: 288 VTWSAMVGAYVVCDFMREALELFCQLLMLKDDVIVLSAVTLATVIRVCANLTDLSTGTCL 347

Query: 248 ---------ARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLG 298
                      D++   T++S YAK G +  A + FNEM  ++ VS+T +I+GY +NG  
Sbjct: 348 HCYAIKSGFVLDLMVGNTLLSMYAKCGIINGAMRFFNEMDLRDAVSFTAIISGYVQNGNS 407

Query: 299 QKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSL 358
           ++ L +F  M +  I P + T +S L ACA +  L +G   H + I   F ++T++ ++L
Sbjct: 408 EEGLRMFLEMQLSGINPEKATLASVLPACAHLAGLHYGSCSHCYAIICGFTADTMICNAL 467

Query: 359 IDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPD 418
           IDMY+KCG ++  R+VFD   +K   + WNTMI A   HG   +A+ LF +M    +KPD
Sbjct: 468 IDMYAKCGKIDTARKVFDRM-HKRGIVSWNTMIIAYGIHGIGLEALLLFDNMQSEGLKPD 526

Query: 419 KITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQL 478
            +T   +++AC+HSGLV EG  +F +MT D GIIP  EH+AC+++LL++AG   ++ + +
Sbjct: 527 DVTFICLISACSHSGLVAEGKYWFNAMTQDFGIIPRMEHYACMVDLLSRAGLFKEVHSFI 586

Query: 479 EKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGR 538
           EKMP E D  +W AL   CR++ N+++G  V  ++    P+S+    LLS++YSA+G+  
Sbjct: 587 EKMPLEPDVRVWGALLSACRVYKNVELGEGVSKKIQKLGPESTGNFVLLSNMYSAVGRWD 646

Query: 539 LVEKVRQLINERQFKKEQAISWIEIENKVHAF 570
              +VR    E+ F+K    SWIEI   VH F
Sbjct: 647 DAAQVRFTQKEQGFEKSPGCSWIEISGVVHTF 678



 Score =  184 bits (467), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 115/389 (29%), Positives = 188/389 (48%), Gaps = 63/389 (16%)

Query: 49  RLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDAR 108
           RL  E    +L+ C +SKSL  GK +H HL     +T  T L+N                
Sbjct: 6   RLSLEYCTVLLESCIQSKSLFRGKLIHQHLLKCLHRTHETNLTN---------------- 49

Query: 109 KVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAER--DVVSWNTMIIGYAKSGAV 166
             FD +P      +  ++  Y     +K AR++FD M  R  +VV WN +I  YA +G  
Sbjct: 50  --FD-VP------FEKLVDLYIACSELKIARHVFDKMPHRPKNVVLWNLLIRAYAWNGPY 100

Query: 167 EEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSI 226
           EE +  Y  +  + I+ N F+F  +L  C  L+E    R++H  +      SNV +S+++
Sbjct: 101 EEAIDLYYKMLGYGITPNRFTFPFVLKACSALKEASEGREIHCDIKRLRLESNVYVSTAL 160

Query: 227 VDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYA-KLGDMESASKLFNEMPEKNPVSW 285
           VD YAKCG L DA+ +FD+   RDV+ W +M+SG++   G  +  ++L  +M  +N VS 
Sbjct: 161 VDFYAKCGCLDDAKEVFDKMHKRDVVAWNSMISGFSLHEGSYDEVARLLVQM--QNDVS- 217

Query: 286 TTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIR 345
                                        PN  T    L A A + SL+HGK++HGF +R
Sbjct: 218 -----------------------------PNSSTIVGVLPAVAQVNSLRHGKEIHGFCVR 248

Query: 346 TNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIR 405
             F  + +V + ++D+Y KC C++  R++FD+    +N + W+ M+ A     +  +A+ 
Sbjct: 249 RGFVGDVVVGTGILDVYGKCQCIDYARRIFDMMGIVKNEVTWSAMVGAYVVCDFMREALE 308

Query: 406 LFHDMVR---SSVKPDKITLAVILNACTH 431
           LF  ++      +    +TLA ++  C +
Sbjct: 309 LFCQLLMLKDDVIVLSAVTLATVIRVCAN 337



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 71/243 (29%), Positives = 123/243 (50%), Gaps = 8/243 (3%)

Query: 257 MVSGYAKLGDMESASKLFNEMPE--KNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIR 314
           +V  Y    +++ A  +F++MP   KN V W  LI  Y  NG  ++A++L+ +M+   I 
Sbjct: 57  LVDLYIACSELKIARHVFDKMPHRPKNVVLWNLLIRAYAWNGPYEEAIDLYYKMLGYGIT 116

Query: 315 PNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQV 374
           PN+ TF   L AC+++     G+++H  + R    SN  V ++L+D Y+KCGCL+D ++V
Sbjct: 117 PNRFTFPFVLKACSALKEASEGREIHCDIKRLRLESNVYVSTALVDFYAKCGCLDDAKEV 176

Query: 375 FDLTDNKENSMLWNTMISALTQH--GYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHS 432
           FD   +K + + WN+MIS  + H   YDE A RL   M ++ V P+  T+  +L A    
Sbjct: 177 FDKM-HKRDVVAWNSMISGFSLHEGSYDEVA-RLLVQM-QNDVSPNSSTIVGVLPAVAQV 233

Query: 433 GLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNA 492
             ++ G           G + +      ++++  +  C D      + M    +   W+A
Sbjct: 234 NSLRHG-KEIHGFCVRRGFVGDVVVGTGILDVYGKCQCIDYARRIFDMMGIVKNEVTWSA 292

Query: 493 LHG 495
           + G
Sbjct: 293 MVG 295



 Score =  102 bits (255), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 84/360 (23%), Positives = 157/360 (43%), Gaps = 40/360 (11%)

Query: 5   FSPRGINRKNLPNNCLIQSFLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAE 64
           F   GI +  +  + ++ +++      +  E    L +L    I L A TLA +++ CA 
Sbjct: 278 FDMMGIVKNEVTWSAMVGAYVVCDFMREALELFCQLLMLKDDVIVLSAVTLATVIRVCAN 337

Query: 65  SKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNN 124
              L  G  +H +  +         + N L+SMY KCG    A + F+++ +++  S+  
Sbjct: 338 LTDLSTGTCLHCY-AIKSGFVLDLMVGNTLLSMYAKCGIINGAMRFFNEMDLRDAVSFTA 396

Query: 125 MLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCN 184
           ++S                               GY ++G  EEGL+ +  ++   I+  
Sbjct: 397 IIS-------------------------------GYVQNGNSEEGLRMFLEMQLSGINPE 425

Query: 185 EFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFD 244
           + + A +L  C  L  L      H   ++ GF ++ +I ++++D YAKCG++  AR++FD
Sbjct: 426 KATLASVLPACAHLAGLHYGSCSHCYAIICGFTADTMICNALIDMYAKCGKIDTARKVFD 485

Query: 245 ETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEK----NPVSWTTLIAGYTRNGLGQK 300
               R +++W TM+  Y   G    A  LF+ M  +    + V++  LI+  + +GL  +
Sbjct: 486 RMHKRGIVSWNTMIIAYGIHGIGLEALLLFDNMQSEGLKPDDVTFICLISACSHSGLVAE 545

Query: 301 ALELFTRMMI-LRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLI 359
               F  M     I P    + +C+    S   L   K+VH F+ +     +  V  +L+
Sbjct: 546 GKYWFNAMTQDFGIIPRMEHY-ACMVDLLSRAGLF--KEVHSFIEKMPLEPDVRVWGALL 602



 Score = 82.8 bits (203), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 65/232 (28%), Positives = 107/232 (46%), Gaps = 12/232 (5%)

Query: 309 MILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIR-------TNFRSNTIVMSSLIDM 361
           M LR R +    +  L +C    SL  GK +H  L++       TN  +  +    L+D+
Sbjct: 1   MQLRTRLSLEYCTVLLESCIQSKSLFRGKLIHQHLLKCLHRTHETNLTNFDVPFEKLVDL 60

Query: 362 YSKCGCLNDGRQVFD-LTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKI 420
           Y  C  L   R VFD +    +N +LWN +I A   +G  E+AI L++ M+   + P++ 
Sbjct: 61  YIACSELKIARHVFDKMPHRPKNVVLWNLLIRAYAWNGPYEEAIDLYYKMLGYGITPNRF 120

Query: 421 TLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEK 480
           T   +L AC+      EG      +   L +  N      L++  A+ GC D      +K
Sbjct: 121 TFPFVLKACSALKEASEGREIHCDIKR-LRLESNVYVSTALVDFYAKCGCLDDAKEVFDK 179

Query: 481 MPYEHDSYLWNALHGVCRIH-GNID-MGRKVVDQLIDQNPQSSATHGLLSSI 530
           M ++ D   WN++     +H G+ D + R +V    D +P SS   G+L ++
Sbjct: 180 M-HKRDVVAWNSMISGFSLHEGSYDEVARLLVQMQNDVSPNSSTIVGVLPAV 230


>gi|222641140|gb|EEE69272.1| hypothetical protein OsJ_28537 [Oryza sativa Japonica Group]
          Length = 784

 Score =  298 bits (764), Expect = 5e-78,   Method: Compositional matrix adjust.
 Identities = 181/598 (30%), Positives = 297/598 (49%), Gaps = 71/598 (11%)

Query: 13  KNLPNNCLIQSFLSLIS----KGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSL 68
           + +P++ ++ S+ +LIS     G    AI  L  +   G+      L+ IL+ CA + + 
Sbjct: 168 EKMPDSDVV-SWNALISGCVLNGHDHRAIELLLQMKSSGLVPNVFMLSSILKACAGAGAF 226

Query: 69  KLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSG 128
            LG+++H                        K  +D D     D I V        ++  
Sbjct: 227 DLGRQIH--------------------GFMIKANADSD-----DYIGV-------GLVDM 254

Query: 129 YANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSF 188
           YA    +  A  +FD M+ RD++ WN +I G +  G  +E    +  LR+  +  N  + 
Sbjct: 255 YAKNHFLDDAMKVFDWMSHRDLILWNALISGCSHGGRHDEAFSIFYGLRKEGLGVNRTTL 314

Query: 189 AGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDA 248
           A +L     LE    TRQVH      GF+ +  + + ++D+Y KC  LSDA R+F+E  +
Sbjct: 315 AAVLKSTASLEAASATRQVHALAEKIGFIFDAHVVNGLIDSYWKCSCLSDAIRVFEECSS 374

Query: 249 RDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRM 308
            D+                               ++ T++I   ++   G+ A++LF  M
Sbjct: 375 GDI-------------------------------IAVTSMITALSQCDHGEGAIKLFMEM 403

Query: 309 MILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCL 368
           +   + P+    SS L ACAS+ + + GKQVH  LI+  F S+    ++L+  Y+KCG +
Sbjct: 404 LRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAHLIKRQFMSDAFAGNALVYTYAKCGSI 463

Query: 369 NDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNA 428
            D    F     +   + W+ MI  L QHG+ ++A+ LF  MV   + P+ IT+  +L A
Sbjct: 464 EDAELAFSSLPER-GVVSWSAMIGGLAQHGHGKRALELFGRMVDEGINPNHITMTSVLCA 522

Query: 429 CTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSY 488
           C H+GLV E   YF SM    GI   +EH++C+I+LL +AG  D  M  +  MP++ ++ 
Sbjct: 523 CNHAGLVDEAKRYFNSMKEMFGIDRTEEHYSCMIDLLGRAGKLDDAMELVNSMPFQANAS 582

Query: 489 LWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLIN 548
           +W AL G  R+H + ++G+   ++L    P+ S TH LL++ Y++ G    V KVR+L+ 
Sbjct: 583 VWGALLGASRVHKDPELGKLAAEKLFILEPEKSGTHVLLANTYASSGMWNEVAKVRKLMK 642

Query: 549 ERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQMGEDA--PSLDAD 604
           +   KKE A+SW+E+++KVH F V D  HPM   +YS L++L   M +    P++D D
Sbjct: 643 DSNIKKEPAMSWVEVKDKVHTFIVGDKSHPMTKEIYSKLDELGDLMSKAGYIPNVDVD 700



 Score =  160 bits (406), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 90/312 (28%), Positives = 154/312 (49%), Gaps = 33/312 (10%)

Query: 118 NLFSYNNMLSGYANLGMMKHARNLFDNM-AERDVVSWNTMIIGYAKSGAVEEGLKFYKVL 176
           ++F  N +++ Y   G M  AR +FD   +ER+ VSWN ++  Y K+    + ++ +  +
Sbjct: 41  DVFVANALVAMYGGFGFMDDARRVFDEAGSERNAVSWNGLMSAYVKNDQCGDAIQVFGEM 100

Query: 177 RRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGEL 236
               I   EF F+ ++  C     +   RQVH  V+  G+                    
Sbjct: 101 VWSGIQPTEFGFSCVVNACTGSRNIDAGRQVHAMVVRMGY-------------------- 140

Query: 237 SDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNG 296
                       +DV T   +V  Y K+G ++ AS +F +MP+ + VSW  LI+G   NG
Sbjct: 141 -----------EKDVFTANALVDMYVKMGRVDIASVIFEKMPDSDVVSWNALISGCVLNG 189

Query: 297 LGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMS 356
              +A+EL  +M    + PN    SS L ACA   +   G+Q+HGF+I+ N  S+  +  
Sbjct: 190 HDHRAIELLLQMKSSGLVPNVFMLSSILKACAGAGAFDLGRQIHGFMIKANADSDDYIGV 249

Query: 357 SLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVK 416
            L+DMY+K   L+D  +VFD   +++  +LWN +IS  +  G  ++A  +F+ + +  + 
Sbjct: 250 GLVDMYAKNHFLDDAMKVFDWMSHRD-LILWNALISGCSHGGRHDEAFSIFYGLRKEGLG 308

Query: 417 PDKITLAVILNA 428
            ++ TLA +L +
Sbjct: 309 VNRTTLAAVLKS 320



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 128/546 (23%), Positives = 233/546 (42%), Gaps = 75/546 (13%)

Query: 5   FSPRGINRKNLPNNCLIQSFLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAE 64
           F   G  R  +  N L+ ++   +   Q  +AI     +   GI+      + ++  C  
Sbjct: 65  FDEAGSERNAVSWNGLMSAY---VKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTG 121

Query: 65  SKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNN 124
           S+++  G++VH                    +M  + G +            K++F+ N 
Sbjct: 122 SRNIDAGRQVH--------------------AMVVRMGYE------------KDVFTANA 149

Query: 125 MLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCN 184
           ++  Y  +G +  A  +F+ M + DVVSWN +I G   +G     ++    ++   +  N
Sbjct: 150 LVDMYVKMGRVDIASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQMKSSGLVPN 209

Query: 185 EFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFD 244
            F  + IL  C       L RQ+HG ++     S+  I   +VD YAK   L DA ++FD
Sbjct: 210 VFMLSSILKACAGAGAFDLGRQIHGFMIKANADSDDYIGVGLVDMYAKNHFLDDAMKVFD 269

Query: 245 ETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALEL 304
               RD++ W  ++SG +  G  + A  +F                G  + GLG      
Sbjct: 270 WMSHRDLILWNALISGCSHGGRHDEAFSIFY---------------GLRKEGLG------ 308

Query: 305 FTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSK 364
                      N+ T ++ L + AS+ +    +QVH    +  F  +  V++ LID Y K
Sbjct: 309 ----------VNRTTLAAVLKSTASLEAASATRQVHALAEKIGFIFDAHVVNGLIDSYWK 358

Query: 365 CGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAV 424
           C CL+D  +VF+   + +   +  +MI+AL+Q  + E AI+LF +M+R  ++PD   L+ 
Sbjct: 359 CSCLSDAIRVFEECSSGDIIAV-TSMITALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSS 417

Query: 425 ILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYE 484
           +LNAC      ++G      +      + +      L+   A+ G  +        +P E
Sbjct: 418 LLNACASLSAYEQGKQVHAHLIKRQ-FMSDAFAGNALVYTYAKCGSIEDAELAFSSLP-E 475

Query: 485 HDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQ--NPQSSATHGLLSSIYSALGKGRLVEK 542
                W+A+ G    HG+     ++  +++D+  NP     H  ++S+  A     LV++
Sbjct: 476 RGVVSWSAMIGGLAQHGHGKRALELFGRMVDEGINPN----HITMTSVLCACNHAGLVDE 531

Query: 543 VRQLIN 548
            ++  N
Sbjct: 532 AKRYFN 537



 Score =  125 bits (315), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 90/334 (26%), Positives = 150/334 (44%), Gaps = 46/334 (13%)

Query: 176 LRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGE 235
           +R   + CNEF+   +L  CV   + +L  QVH   + TGF S+V +++++V  Y   G 
Sbjct: 1   MRAEGVCCNEFALPVVLK-CVP--DAQLGAQVHAMAMATGFGSDVFVANALVAMYGGFGF 57

Query: 236 LSDARRLFDETDA-RDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTR 294
           + DARR+FDE  + R+ ++W  ++S Y K                               
Sbjct: 58  MDDARRVFDEAGSERNAVSWNGLMSAYVK------------------------------- 86

Query: 295 NGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIV 354
           N     A+++F  M+   I+P +  FS  + AC    ++  G+QVH  ++R  +  +   
Sbjct: 87  NDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIDAGRQVHAMVVRMGYEKDVFT 146

Query: 355 MSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSS 414
            ++L+DMY K G ++    +F+   + +  + WN +IS    +G+D +AI L   M  S 
Sbjct: 147 ANALVDMYVKMGRVDIASVIFEKMPDSD-VVSWNALISGCVLNGHDHRAIELLLQMKSSG 205

Query: 415 VKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHH----ACLIELLAQAGC 470
           + P+   L+ IL AC  +G    G        H   I  N +        L+++ A+   
Sbjct: 206 LVPNVFMLSSILKACAGAGAFDLG-----RQIHGFMIKANADSDDYIGVGLVDMYAKNHF 260

Query: 471 SDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNID 504
            D  M   + M +  D  LWNAL   C   G  D
Sbjct: 261 LDDAMKVFDWMSHR-DLILWNALISGCSHGGRHD 293


>gi|86439692|emb|CAJ19324.1| selenium binding protein [Triticum aestivum]
          Length = 624

 Score =  298 bits (764), Expect = 5e-78,   Method: Compositional matrix adjust.
 Identities = 171/568 (30%), Positives = 282/568 (49%), Gaps = 65/568 (11%)

Query: 37  ISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLIS 96
           +  LDLL    +          +  CA+SK+L+  +++H HL  + R     FL N LI 
Sbjct: 36  LRDLDLLDAGELAPTPRVYRSFITACAQSKNLEDARKIHAHLG-SSRFAGDAFLDNSLIH 94

Query: 97  MYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTM 156
           MY KC S +DAR                               N+FD M  +D+VSW ++
Sbjct: 95  MYCKCRSVLDAR-------------------------------NVFDQMRRKDMVSWTSL 123

Query: 157 IIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGF 216
           I GYA++    E +     + +     N F+FA +L       +    RQ+H   +  G+
Sbjct: 124 IAGYAQNDMPVEAIGLLPGMLKGRFKPNGFTFASLLKAAGAYADSGTGRQIHALAVKCGW 183

Query: 217 LSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNE 276
             +V + S+++D YA+C                               G M+ A+ +F++
Sbjct: 184 HEDVYVGSALLDMYARC-------------------------------GKMDMATAVFDK 212

Query: 277 MPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHG 336
           +  KN VSW  LI+G+ R G G+ AL  F  M+         T+SS   + A + +L+ G
Sbjct: 213 LDSKNGVSWNALISGFARKGDGESALMTFAEMLRNGFEATHFTYSSVFSSIARLGALEQG 272

Query: 337 KQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQ 396
           K VH  +I++  +    V ++L+DMY+K G + D R+VFD  DNK+  + WN+M++A  Q
Sbjct: 273 KWVHAHVIKSRQKLTAFVGNTLLDMYAKSGSMIDARKVFDRVDNKD-LVTWNSMLTAFAQ 331

Query: 397 HGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQE 456
           +G  ++A+  F +M +S V  ++IT   IL AC+H GLV+EG  YFE M  +  + P  +
Sbjct: 332 YGLGKEAVSHFEEMRKSGVYLNQITFLCILTACSHGGLVKEGKRYFE-MMKEYDLEPEID 390

Query: 457 HHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQ 516
           H+  ++ LL +AG  +  +  + KMP E  + +W AL   CR+H N  +G+   D + + 
Sbjct: 391 HYVTVVALLGRAGLLNYALVFIFKMPMEPTAAVWGALLAACRMHKNAKVGQFAADHVFEL 450

Query: 517 NPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSL 576
           +P  S    LL +IY++ G+     +VR ++     KKE A SW+E+EN VH F  +D  
Sbjct: 451 DPDDSGPPVLLYNIYASTGQWDAAARVRMMMKTTGVKKEPACSWVEMENSVHMFVANDDT 510

Query: 577 HPMRDVLYSVLEQLAGQMGEDAPSLDAD 604
           HP  + +Y +  +++ ++ ++    D D
Sbjct: 511 HPQAEEIYKMWGEISKKIRKEGYVPDMD 538


>gi|293336578|ref|NP_001168380.1| uncharacterized protein LOC100382149 [Zea mays]
 gi|223947871|gb|ACN28019.1| unknown [Zea mays]
 gi|413955892|gb|AFW88541.1| hypothetical protein ZEAMMB73_254585 [Zea mays]
          Length = 651

 Score =  298 bits (764), Expect = 5e-78,   Method: Compositional matrix adjust.
 Identities = 161/541 (29%), Positives = 274/541 (50%), Gaps = 34/541 (6%)

Query: 54  TLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDK 113
           T   +   CA    ++ G +VH H  +    +   +L N L+ MY  CG    AR+VFD 
Sbjct: 108 THPLLAAACAARGDVREGLQVHSH-SVKHGFSDNLYLRNALMHMYSACGCVASARRVFDA 166

Query: 114 IPVKNLFSYNNMLSGY-------------------------------ANLGMMKHARNLF 142
            PV +  S+N +L+ Y                               A  GM++ AR +F
Sbjct: 167 GPVWDAVSWNTILATYVRDGDVEQAVKVFTRMPERSAAAVSAMVALFARRGMVEEARGVF 226

Query: 143 DNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELK 202
           D    RD  +W  M+  + ++    E L  +  +R      +E     ++  C K   ++
Sbjct: 227 DGAEHRDAFTWTAMVSCFERNDLFMEALAVFSDMREEGWPVDEAVMVSVVAACAKSGVIQ 286

Query: 203 LTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYA 262
                HG V+  G  S V + + ++  Y+ C ++  ARRLFD  ++ D  +W +M+SGY 
Sbjct: 287 NGEVCHGLVVRAGLGSRVNVQNVLIHMYSSCQDVVAARRLFDNGESLDHFSWNSMISGYL 346

Query: 263 KLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSS 322
           K G +E A  LF+ MP+K+ VSW+ +IAG   N    +AL +F  M    I+P+  T  S
Sbjct: 347 KNGRVEDAKALFDVMPDKDNVSWSAMIAGCVHNNQSSEALNVFDSMRAHEIKPDDVTLVS 406

Query: 323 CLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKE 382
            + AC+++ +L+ GK VH ++ +  +    ++ +SLIDMY KCGC+    +VFD+ + K 
Sbjct: 407 VISACSNLSALEQGKLVHEYIRKYQYNITIVLGTSLIDMYMKCGCMEAALEVFDMLEEK- 465

Query: 383 NSMLWNTMISALTQHGYDEQAIRLFHDM-VRSSVKPDKITLAVILNACTHSGLVQEGLTY 441
            +  WN +I  L  +G   +++ +F +M    +  P++IT   +L+AC H GLV+EG  +
Sbjct: 466 GTPCWNAVIVGLAMNGLVTRSLDMFSEMEATGTAVPNEITFTGVLSACRHGGLVEEGRQF 525

Query: 442 FESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHG 501
           F+ M +   I+PN  H+ C+++LL +AG   +  + ++ MP   D   W AL G C  HG
Sbjct: 526 FKLMQNKYQIVPNIRHYGCMVDLLGRAGYVREAEDMIQSMPMSPDVPAWGALLGACWKHG 585

Query: 502 NIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWI 561
           + ++G +V  +L+  +P       +LS+IY++ G  + V+ +R  + ++   K    S +
Sbjct: 586 DSEVGERVGKKLVKLDPDHDGFQTMLSNIYASEGMWQCVKDLRGSMKQQHVAKVAGCSMV 645

Query: 562 E 562
           E
Sbjct: 646 E 646



 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 104/488 (21%), Positives = 206/488 (42%), Gaps = 79/488 (16%)

Query: 135 MKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTI 194
           + H+  LF  +   +  + NT++    + G        Y  +     + + ++   +   
Sbjct: 59  LHHSLQLFGLVRSPNAFTCNTLLKAALRQGFPHLCFPLYASM---PAAPDTYTHPLLAAA 115

Query: 195 CVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTW 254
           C    +++   QVH   +  GF  N+ + ++++  Y+ CG ++ ARR+FD     D ++W
Sbjct: 116 CAARGDVREGLQVHSHSVKHGFSDNLYLRNALMHMYSACGCVASARRVFDAGPVWDAVSW 175

Query: 255 TTMVSGYAKLGDMESASKLFNEMPE-------------------------------KNPV 283
            T+++ Y + GD+E A K+F  MPE                               ++  
Sbjct: 176 NTILATYVRDGDVEQAVKVFTRMPERSAAAVSAMVALFARRGMVEEARGVFDGAEHRDAF 235

Query: 284 SWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFL 343
           +WT +++ + RN L  +AL +F+ M       ++    S + ACA    +++G+  HG +
Sbjct: 236 TWTAMVSCFERNDLFMEALAVFSDMREEGWPVDEAVMVSVVAACAKSGVIQNGEVCHGLV 295

Query: 344 IRTNFRSNTIVMSSLIDMYSKC-------------------------------GCLNDGR 372
           +R    S   V + LI MYS C                               G + D +
Sbjct: 296 VRAGLGSRVNVQNVLIHMYSSCQDVVAARRLFDNGESLDHFSWNSMISGYLKNGRVEDAK 355

Query: 373 QVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHS 432
            +FD+  +K+N + W+ MI+    +    +A+ +F  M    +KPD +TL  +++AC++ 
Sbjct: 356 ALFDVMPDKDN-VSWSAMIAGCVHNNQSSEALNVFDSMRAHEIKPDDVTLVSVISACSNL 414

Query: 433 GLVQEGL---TYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYL 489
             +++G     Y     +++ I+        LI++  + GC +  +   + M  E  +  
Sbjct: 415 SALEQGKLVHEYIRKYQYNITIVLGTS----LIDMYMKCGCMEAALEVFD-MLEEKGTPC 469

Query: 490 WNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHG--LLSSIYSALGKGRLVEKVRQLI 547
           WNA+     ++G +    + +D   +     +A       + + SA   G LVE+ RQ  
Sbjct: 470 WNAVIVGLAMNGLV---TRSLDMFSEMEATGTAVPNEITFTGVLSACRHGGLVEEGRQFF 526

Query: 548 NERQFKKE 555
              Q K +
Sbjct: 527 KLMQNKYQ 534



 Score =  125 bits (315), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 100/405 (24%), Positives = 168/405 (41%), Gaps = 77/405 (19%)

Query: 35  EAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHL 94
           EA++    + + G  +    +  ++  CA+S  ++ G+  H  L +         + N L
Sbjct: 252 EALAVFSDMREEGWPVDEAVMVSVVAACAKSGVIQNGEVCH-GLVVRAGLGSRVNVQNVL 310

Query: 95  ISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWN 154
           I MY  C   V AR++FD     + FS+N+M+SGY   G ++ A+ LFD M ++D VSW+
Sbjct: 311 IHMYSSCQDVVAARRLFDNGESLDHFSWNSMISGYLKNGRVEDAKALFDVMPDKDNVSWS 370

Query: 155 TMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVT 214
            MI G   +    E L  +  +R   I  ++ +   +++ C  L  L+  + VH  +   
Sbjct: 371 AMIAGCVHNNQSSEALNVFDSMRAHEIKPDDVTLVSVISACSNLSALEQGKLVHEYIRKY 430

Query: 215 GFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLF 274
            +   +V+ +S++D Y KCG +  A  +FD  + +    W  ++ G A            
Sbjct: 431 QYNITIVLGTSLIDMYMKCGCMEAALEVFDMLEEKGTPCWNAVIVGLAM----------- 479

Query: 275 NEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIR-PNQHTFSSCLCACASIVSL 333
                               NGL  ++L++F+ M       PN+ TF+  L AC      
Sbjct: 480 --------------------NGLVTRSLDMFSEMEATGTAVPNEITFTGVLSAC------ 513

Query: 334 KHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNK----ENSMLWNT 389
           +HG                             G + +GRQ F L  NK     N   +  
Sbjct: 514 RHG-----------------------------GLVEEGRQFFKLMQNKYQIVPNIRHYGC 544

Query: 390 MISALTQHGYDEQAIRLFHDMVRS-SVKPDKITLAVILNACTHSG 433
           M+  L + GY    +R   DM++S  + PD      +L AC   G
Sbjct: 545 MVDLLGRAGY----VREAEDMIQSMPMSPDVPAWGALLGACWKHG 585



 Score = 75.5 bits (184), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 64/243 (26%), Positives = 104/243 (42%), Gaps = 34/243 (13%)

Query: 206 QVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLG 265
           Q+H Q L +G L+         DAYA       A RL         L +TT  +    L 
Sbjct: 22  QIHAQFLASGLLA---------DAYA-------ASRL---------LLFTTSATAARLLP 56

Query: 266 -DMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCL 324
             +  + +LF  +   N  +  TL+    R G       L+  M      P+ +T     
Sbjct: 57  HPLHHSLQLFGLVRSPNAFTCNTLLKAALRQGFPHLCFPLYASM---PAAPDTYTHPLLA 113

Query: 325 CACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENS 384
            ACA+   ++ G QVH   ++  F  N  + ++L+ MYS CGC+   R+VFD      ++
Sbjct: 114 AACAARGDVREGLQVHSHSVKHGFSDNLYLRNALMHMYSACGCVASARRVFD-AGPVWDA 172

Query: 385 MLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFES 444
           + WNT+++   + G  EQA+++F  M   S       +A+        G+V+E    F+ 
Sbjct: 173 VSWNTILATYVRDGDVEQAVKVFTRMPERSAAAVSAMVALF----ARRGMVEEARGVFDG 228

Query: 445 MTH 447
             H
Sbjct: 229 AEH 231


>gi|297819536|ref|XP_002877651.1| hypothetical protein ARALYDRAFT_485272 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297323489|gb|EFH53910.1| hypothetical protein ARALYDRAFT_485272 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1217

 Score =  298 bits (763), Expect = 5e-78,   Method: Compositional matrix adjust.
 Identities = 172/563 (30%), Positives = 285/563 (50%), Gaps = 49/563 (8%)

Query: 78  LKLTQRKTP--TTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNN-----MLSGYA 130
           L+L Q+ +P  T F+   ++  Y    +    R V  +I  ++L  YN+     ++  YA
Sbjct: 31  LELDQKNSPKETAFMLGQVLDTYPDLKT---LRTVHSRIISEDL-RYNSSLGVKLMRAYA 86

Query: 131 NLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAG 190
           +L  +  AR +FD + ER+V+  N MI  Y  +G   EG++ +  +    +  + ++F  
Sbjct: 87  SLKDVATARKVFDEIPERNVIIINVMIRSYVNNGFYREGIQVFGTMCSCHVKPDHYTFPC 146

Query: 191 ILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARD 250
           +L  C     + + +++HG     G  S + + + +V  Y KCG LS+AR + DE   RD
Sbjct: 147 VLKACSCSGNIVIGKKIHGSATKVGLSSTLFVGNGLVSMYGKCGFLSEARLVLDEMSRRD 206

Query: 251 VLTWTTMVSGYAK----------LGDMESAS---------------------------KL 273
           V++W ++V+GYA+            +MES                              +
Sbjct: 207 VVSWNSLVAGYAQNQRFDDALEVCREMESVKISHDAGTMASLLPAVSNTTTENVMYVKDM 266

Query: 274 FNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSL 333
           F +M +K+ VSW  +I  Y +N +  +A+EL++ M      P+  + +S L AC    +L
Sbjct: 267 FFKMGKKSLVSWNVMIGVYMKNAMPVEAVELYSGMEADGFEPDAVSITSVLPACGDTSAL 326

Query: 334 KHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISA 393
             GK++HG++ R     N ++ ++LIDMY+KCGCL+  R VF+   ++ + + W  MISA
Sbjct: 327 SLGKKIHGYIERKKLIPNLLLENALIDMYAKCGCLDRARDVFENMKSR-DVVSWTAMISA 385

Query: 394 LTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIP 453
               G    A+ LF  M  S + PD I     L AC+H+GL++EG + F+ MT    I P
Sbjct: 386 YGFSGRGCDAVALFSKMQDSGLVPDSIAFVTTLAACSHAGLLEEGRSCFKLMTDHYKITP 445

Query: 454 NQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQL 513
             EH AC+++LL +AG   +    +++MP E +  +W AL G CR+H N D+G    D+L
Sbjct: 446 RLEHLACMVDLLGRAGKVKEAYKFIQEMPMEPNERVWGALLGACRVHSNTDIGLLAADKL 505

Query: 514 IDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVS 573
               P+ S  + LLS+IY+  G+   V  +R ++  +  KK    S +E+   +H F V 
Sbjct: 506 FQLAPEQSGYYVLLSNIYAKAGRWEEVTNIRNIMKSKGLKKNPGASNVEVNRIIHTFLVG 565

Query: 574 DSLHPMRDVLYSVLEQLAGQMGE 596
           D  HP    +Y  L+ L  +M E
Sbjct: 566 DRSHPQSAEIYRELDVLVKKMKE 588



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 96/420 (22%), Positives = 182/420 (43%), Gaps = 77/420 (18%)

Query: 18  NCLIQSFLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLH 77
           N +I+S+   ++ G   E I     +    ++    T   +L+ C+ S ++ +GK++H  
Sbjct: 110 NVMIRSY---VNNGFYREGIQVFGTMCSCHVKPDHYTFPCVLKACSCSGNIVIGKKIHGS 166

Query: 78  LKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYA------- 130
                  + T F+ N L+SMY KCG   +AR V D++  +++ S+N++++GYA       
Sbjct: 167 ATKVGLSS-TLFVGNGLVSMYGKCGFLSEARLVLDEMSRRDVVSWNSLVAGYAQNQRFDD 225

Query: 131 ---------------NLGMMK---------------HARNLFDNMAERDVVSWNTMIIGY 160
                          + G M                + +++F  M ++ +VSWN MI  Y
Sbjct: 226 ALEVCREMESVKISHDAGTMASLLPAVSNTTTENVMYVKDMFFKMGKKSLVSWNVMIGVY 285

Query: 161 AKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNV 220
            K+    E ++ Y  +       +  S   +L  C     L L +++HG +     + N+
Sbjct: 286 MKNAMPVEAVELYSGMEADGFEPDAVSITSVLPACGDTSALSLGKKIHGYIERKKLIPNL 345

Query: 221 VISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEK 280
           ++ ++++D YAKCG L  AR +F+   +RDV++WT M+S Y                   
Sbjct: 346 LLENALIDMYAKCGCLDRARDVFENMKSRDVVSWTAMISAY------------------- 386

Query: 281 NPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVH 340
                     G++  G G  A+ LF++M    + P+   F + L AC+    L+ G+   
Sbjct: 387 ----------GFS--GRGCDAVALFSKMQDSGLVPDSIAFVTTLAACSHAGLLEEGRSC- 433

Query: 341 GFLIRTNFRSNTIVMSSL---IDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQH 397
            F + T+    T  +  L   +D+  + G + +  +       + N  +W  ++ A   H
Sbjct: 434 -FKLMTDHYKITPRLEHLACMVDLLGRAGKVKEAYKFIQEMPMEPNERVWGALLGACRVH 492


>gi|359477907|ref|XP_002270439.2| PREDICTED: pentatricopeptide repeat-containing protein
           At1g04840-like [Vitis vinifera]
          Length = 677

 Score =  298 bits (763), Expect = 5e-78,   Method: Compositional matrix adjust.
 Identities = 167/552 (30%), Positives = 288/552 (52%), Gaps = 40/552 (7%)

Query: 86  PTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFS----YNNMLSGYANLGMMKHARNL 141
           P+     H I +     +     ++  +I + NLFS       ++S   +L  + +A ++
Sbjct: 35  PSRSPETHFIPLIHASNTLPQLHQIHAQIFLHNLFSNSRVVTQLISSSCSLKSLDYALSI 94

Query: 142 FDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEEL 201
           F      ++  +N +I G A++   E  +  + ++ R SI  +  +   +L     L ++
Sbjct: 95  FRCFDHPNLFVFNALIRGLAENSRFEGSVSHFVLMLRLSIRPDRLTLPFVLKSVAALVDV 154

Query: 202 KLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARD---------VL 252
            L R +HG V+  G   +  +  S+VD Y K GEL    +LFDE+  R+         VL
Sbjct: 155 GLGRCLHGGVMKLGLEFDSFVRVSLVDMYVKIGELGFGLQLFDESPQRNKAESILLWNVL 214

Query: 253 --------------------------TWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWT 286
                                     +W ++++G+ + GD++ A +LF +MPEKN VSWT
Sbjct: 215 INGCCKVGDLSKAASLFEAMPERNAGSWNSLINGFVRNGDLDRARELFVQMPEKNVVSWT 274

Query: 287 TLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRT 346
           T+I G+++NG  +KAL +F RM+   +RPN  T  S L AC  I +L+ G+++H +L   
Sbjct: 275 TMINGFSQNGDHEKALSMFWRMLEEGVRPNDLTVVSALLACTKIGALQVGERIHNYLSSN 334

Query: 347 NFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRL 406
            F+ N  + ++L+DMY+KCG +    +VF  T  K+  + W+ MI     HG  +QA++ 
Sbjct: 335 GFQLNRGIGTALVDMYAKCGNIKSASRVFVETKGKD-LLTWSVMIWGWAIHGCFDQALQC 393

Query: 407 FHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLA 466
           F  M  + + PD++    IL AC+HSG V +GL +FESM  D  I P  +H+  +++LL 
Sbjct: 394 FVKMKSAGINPDEVIFLAILTACSHSGNVDQGLNFFESMRLDYSIEPTMKHYTLIVDLLG 453

Query: 467 QAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGL 526
           +AG  D+ ++ ++ MP   D  +W AL   CR H NI+M     ++L+   P+   ++  
Sbjct: 454 RAGRLDEALSFIQSMPINPDFVIWGALFCACRAHKNIEMAELTAEKLLQLEPKHPGSYVF 513

Query: 527 LSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSV 586
           LS++Y+A+G+   VE+VR L+  R  +K+   S+IE+E +VH+F   D  H   + +   
Sbjct: 514 LSNVYAAVGRWEDVERVRTLMKNRGVEKDPGWSYIEVEGQVHSFVAGDHAHVRAEEISLK 573

Query: 587 LEQLAGQMGEDA 598
           LE++     ++ 
Sbjct: 574 LEEITASAKQEG 585



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 88/341 (25%), Positives = 155/341 (45%), Gaps = 41/341 (12%)

Query: 69  KLGKRVHLHLKLTQR-KTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLS 127
           +LG  + L  +  QR K  +  L N LI+   K G    A  +F+ +P +N  S+N++++
Sbjct: 188 ELGFGLQLFDESPQRNKAESILLWNVLINGCCKVGDLSKAASLFEAMPERNAGSWNSLIN 247

Query: 128 GYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFS 187
           G+   G +  AR LF  M E++VVSW TMI G++++G  E+ L  +  +    +  N+ +
Sbjct: 248 GFVRNGDLDRARELFVQMPEKNVVSWTTMINGFSQNGDHEKALSMFWRMLEEGVRPNDLT 307

Query: 188 FAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETD 247
               L  C K+  L++  ++H  +   GF  N  I +++VD YAKCG +  A R+F ET 
Sbjct: 308 VVSALLACTKIGALQVGERIHNYLSSNGFQLNRGIGTALVDMYAKCGNIKSASRVFVETK 367

Query: 248 ARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTR 307
            +D+LTW+ M+ G+A                                +G   +AL+ F +
Sbjct: 368 GKDLLTWSVMIWGWAI-------------------------------HGCFDQALQCFVK 396

Query: 308 MMILRIRPNQHTFSSCLCACASIVSLKHGKQVH-----GFLIRTNFRSNTIVMSSLIDMY 362
           M    I P++  F + L AC+   ++  G          + I    +  T++    +D+ 
Sbjct: 397 MKSAGINPDEVIFLAILTACSHSGNVDQGLNFFESMRLDYSIEPTMKHYTLI----VDLL 452

Query: 363 SKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQA 403
            + G L++            + ++W  +  A   H   E A
Sbjct: 453 GRAGRLDEALSFIQSMPINPDFVIWGALFCACRAHKNIEMA 493



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 40/151 (26%), Positives = 74/151 (49%), Gaps = 5/151 (3%)

Query: 31  GQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFL 90
           G   +A+S    + + G+R    T+   L  C +  +L++G+R+H +L     +     +
Sbjct: 284 GDHEKALSMFWRMLEEGVRPNDLTVVSALLACTKIGALQVGERIHNYLSSNGFQL-NRGI 342

Query: 91  SNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAER-- 148
              L+ MY KCG+   A +VF +   K+L +++ M+ G+A  G    A   F  M     
Sbjct: 343 GTALVDMYAKCGNIKSASRVFVETKGKDLLTWSVMIWGWAIHGCFDQALQCFVKMKSAGI 402

Query: 149 --DVVSWNTMIIGYAKSGAVEEGLKFYKVLR 177
             D V +  ++   + SG V++GL F++ +R
Sbjct: 403 NPDEVIFLAILTACSHSGNVDQGLNFFESMR 433


>gi|242091920|ref|XP_002436450.1| hypothetical protein SORBIDRAFT_10g002910 [Sorghum bicolor]
 gi|241914673|gb|EER87817.1| hypothetical protein SORBIDRAFT_10g002910 [Sorghum bicolor]
          Length = 686

 Score =  298 bits (763), Expect = 6e-78,   Method: Compositional matrix adjust.
 Identities = 165/512 (32%), Positives = 290/512 (56%), Gaps = 7/512 (1%)

Query: 54  TLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDK 113
            L  ++  CA+    ++G++VH  L + + +  +  L+  LI MY KC     AR V D+
Sbjct: 177 VLTTVVGACADRMKYEIGRQVHARLVVAKTEIDSV-LACALIDMYCKCRDLDSARLVLDR 235

Query: 114 IPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFY 173
           +   +  S + ++ GYA+ G +  A  LFD +    +  WN++I G   +   +     +
Sbjct: 236 LKHVDEISLSALVYGYASYGQLHKALCLFDKVENPSIALWNSLISGCVPAYHGDSAFVLF 295

Query: 174 KVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKC 233
             + R  +  N   +A +L +C  L  LK  +Q H   L +G +++++ +S+++D Y+KC
Sbjct: 296 VRMLRSDMLPNSSIYAIVLNMCGFLGMLKPGQQTHACALKSGAVNDLIAASALIDFYSKC 355

Query: 234 GELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYT 293
              +DA + F E    D +   +M++ Y+  G ++ A ++F+ +P K+ +SW ++I G++
Sbjct: 356 SLWADACQAFGELRHHDTIVLNSMITVYSNCGQIDEARRVFDMIPSKSVISWNSMIVGFS 415

Query: 294 RNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTI 353
           +NG    A+ELF  M  L ++ +    SS L A  SI S+  G+Q+    I    +S+ I
Sbjct: 416 QNGHALDAMELFCEMHWLGLQIDNVAVSSVLSASGSICSISFGEQIFALAIALGLQSDHI 475

Query: 354 VMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRS 413
           V+SSLID+Y KCG L +G ++FD  DN +  +LWN+M+     +GY  +A++ F D++RS
Sbjct: 476 VVSSLIDLYCKCGNLANGCRIFDGIDNPDE-VLWNSMLIGYASNGYGLEALK-FLDLMRS 533

Query: 414 -SVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSD 472
             +KP + T   +L+AC HSGLV+EGL +F  M  D G+ P+ EH+AC+ +LL +AG  D
Sbjct: 534 RGLKPSERTFVGVLSACCHSGLVEEGLRWFYRMKEDFGVSPSAEHYACVTDLLVRAGRLD 593

Query: 473 QLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQ--NPQSSATHGLLSSI 530
           + +  +E MP++ D+  W ++ G C+  GN  +  KV ++L++   +P SS  +  LSS 
Sbjct: 594 EAVEFIENMPFKADAISWTSIIGGCKAQGNEALLHKVANKLMETGLSPHSS-LYVQLSST 652

Query: 531 YSALGKGRLVEKVRQLINERQFKKEQAISWIE 562
            +A G      ++R ++++R+  K    SWI+
Sbjct: 653 LAAHGDWDKSAEIRSMMHDRRISKNAGCSWID 684



 Score =  168 bits (425), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 113/433 (26%), Positives = 204/433 (47%), Gaps = 45/433 (10%)

Query: 77  HLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMK 136
           H    +  T   F  N LI+  FK G    A +VF  +P +N FS+N +++G A  G + 
Sbjct: 61  HRLFDEMPTKNCFSYNSLITALFKSGDHRAALRVFRSMPDRNTFSWNAVITGLAGAGDLD 120

Query: 137 HARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNE---------FS 187
            AR+L + M  +D V+ + ++  + + G V+E    + +L+R    CN          F 
Sbjct: 121 TARDLLEEMPVKDAVACHAVLHRFVRCGRVDEA---FALLKRIGSHCNPDVIPPWSDPFV 177

Query: 188 FAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETD 247
              ++  C    + ++ RQVH +++V     + V++ +++D Y KC +L  AR + D   
Sbjct: 178 LTTVVGACADRMKYEIGRQVHARLVVAKTEIDSVLACALIDMYCKCRDLDSARLVLDRLK 237

Query: 248 ARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTR 307
             D ++ + +V GYA  G +  A  LF+++   +   W +LI+G      G  A  LF R
Sbjct: 238 HVDEISLSALVYGYASYGQLHKALCLFDKVENPSIALWNSLISGCVPAYHGDSAFVLFVR 297

Query: 308 MMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSK--- 364
           M+   + PN   ++  L  C  +  LK G+Q H   +++   ++ I  S+LID YSK   
Sbjct: 298 MLRSDMLPNSSIYAIVLNMCGFLGMLKPGQQTHACALKSGAVNDLIAASALIDFYSKCSL 357

Query: 365 ----------------------------CGCLNDGRQVFDLTDNKENSMLWNTMISALTQ 396
                                       CG +++ R+VFD+  +K + + WN+MI   +Q
Sbjct: 358 WADACQAFGELRHHDTIVLNSMITVYSNCGQIDEARRVFDMIPSK-SVISWNSMIVGFSQ 416

Query: 397 HGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQE 456
           +G+   A+ LF +M    ++ D + ++ +L+A      +  G   F ++   LG+  +  
Sbjct: 417 NGHALDAMELFCEMHWLGLQIDNVAVSSVLSASGSICSISFGEQIF-ALAIALGLQSDHI 475

Query: 457 HHACLIELLAQAG 469
             + LI+L  + G
Sbjct: 476 VVSSLIDLYCKCG 488


>gi|225460143|ref|XP_002275945.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g71490-like [Vitis vinifera]
          Length = 748

 Score =  298 bits (763), Expect = 6e-78,   Method: Compositional matrix adjust.
 Identities = 171/587 (29%), Positives = 301/587 (51%), Gaps = 41/587 (6%)

Query: 15  LPNNCLIQSFLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRV 74
            P N LI S+   +  G   +A+S+   + ++GIR    T   +L+ C E   L  GK V
Sbjct: 167 FPWNLLISSY---VRNGFCQKALSAYKQMVKKGIRPDNFTYPSVLKACGEELDLGFGKEV 223

Query: 75  HLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGM 134
           H  +  ++ K  +  + N LISMY KCG    AR +FDKIP ++  S+N+M+S YA++GM
Sbjct: 224 HESINASRIKW-SLIVHNALISMYGKCGKVGIARDLFDKIPERDAVSWNSMISVYASMGM 282

Query: 135 MKHARNLFDNMAERDV----VSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAG 190
              A  LF +M   D+    + WNT+  GY ++G  +  L+    +R+     +  +   
Sbjct: 283 WNEAFELFGSMWAEDIELNIIIWNTIAGGYLRTGNYKGALELLSQMRKCGSHLDSVALII 342

Query: 191 ILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARD 250
            L  C  + + KL +++H   +                           R  F E D   
Sbjct: 343 GLGACSHIGDAKLGKEIHSFAI---------------------------RSCFGEVDTVK 375

Query: 251 VLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMI 310
                 +++ Y++  D++ A  LF  M  K+ ++W ++I+G       ++A  L   M++
Sbjct: 376 ----NALITMYSRCKDLKHAYLLFQLMEAKSLITWNSIISGCCHMDRSEEASFLLREMLL 431

Query: 311 LRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIR-TNFRSNTIVMSSLIDMYSKCGCLN 369
             I PN  T +S L  CA + +L+HGK+ H ++ R  +F+ + ++ ++L+DMY++ G + 
Sbjct: 432 FGIEPNYVTIASVLPLCARVANLQHGKEFHCYMTRREDFKDHLLLWNALVDMYARSGKVL 491

Query: 370 DGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNAC 429
           + R+VFD+   ++  M + +MI+     G  + A++LF +M    +KPD IT+  +L+AC
Sbjct: 492 EARRVFDMLGERDK-MTYTSMIAGYGMQGEGQAALKLFEEMNNFQIKPDHITMIAVLSAC 550

Query: 430 THSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYL 489
           +HSGLV +G   FE M    G+ P+ EH AC+ +L  +AG  ++    +  MPY+    +
Sbjct: 551 SHSGLVTQGQLLFEKMRSLYGLTPHLEHFACMTDLFGRAGLLNKAKEIIRNMPYKPTPAM 610

Query: 490 WNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINE 549
           W  L G CRIH N ++G    ++L++  P++   + L++++Y+A G    + KVR  + +
Sbjct: 611 WATLIGACRIHRNTEIGEWAAEKLLEMKPENPGYYVLIANMYAAAGCWNKLAKVRIFMRD 670

Query: 550 RQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQMGE 596
              +K    +W+++      F V D+ +   D +Y +LE L   M E
Sbjct: 671 LGVRKAPGCAWVDVGTGFSPFLVDDTSNANADEIYPLLEGLTMVMKE 717



 Score =  167 bits (422), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 134/547 (24%), Positives = 240/547 (43%), Gaps = 76/547 (13%)

Query: 18  NCLIQSFLSLISKGQLSEAISSLDLL----AQRGIRLPAETLAFILQQCAESKSLKLGKR 73
           + L+ S     S+G L +A  ++ L+    +     L    ++ +L  C + KSL  G++
Sbjct: 62  DSLLTSLKEFTSRGNLLDAFKTVSLIRLHASSASQDLIVHPISSLLSSCTDVKSLAEGRQ 121

Query: 74  VHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLG 133
           +H                 H+IS+ F+             I V  L ++      Y+   
Sbjct: 122 LH----------------GHIISLGFEQ----------HPILVPKLVTF------YSAFN 149

Query: 134 MMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILT 193
           ++  A  + +N        WN +I  Y ++G  ++ L  YK + +  I  + F++  +L 
Sbjct: 150 LLVDAHVITENSNILHPFPWNLLISSYVRNGFCQKALSAYKQMVKKGIRPDNFTYPSVLK 209

Query: 194 ICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLT 253
            C +  +L   ++VH  +  +    ++++ ++++  Y KCG++  AR LFD+   RD ++
Sbjct: 210 ACGEELDLGFGKEVHESINASRIKWSLIVHNALISMYGKCGKVGIARDLFDKIPERDAVS 269

Query: 254 WTTMVSGYAKLGDMESASKLFNEM----PEKNPVSWTTLIAGYTRNGLGQKALELFTRMM 309
           W +M+S YA +G    A +LF  M     E N + W T+  GY R G  + ALEL ++M 
Sbjct: 270 WNSMISVYASMGMWNEAFELFGSMWAEDIELNIIIWNTIAGGYLRTGNYKGALELLSQMR 329

Query: 310 ILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLN 369
                 +       L AC+ I   K GK++H F IR+ F     V ++LI MYS+C  L 
Sbjct: 330 KCGSHLDSVALIIGLGACSHIGDAKLGKEIHSFAIRSCFGEVDTVKNALITMYSRCKDLK 389

Query: 370 DGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNAC 429
               +F L + K + + WN++IS        E+A  L  +M+   ++P+ +T+A +L  C
Sbjct: 390 HAYLLFQLMEAK-SLITWNSIISGCCHMDRSEEASFLLREMLLFGIEPNYVTIASVLPLC 448

Query: 430 THSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYL 489
                +Q G  +   MT                    +    D L+             L
Sbjct: 449 ARVANLQHGKEFHCYMTR-------------------REDFKDHLL-------------L 476

Query: 490 WNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINE 549
           WNAL  +    G +   R+V D L +++     T+  + + Y   G+G+   K+ + +N 
Sbjct: 477 WNALVDMYARSGKVLEARRVFDMLGERDKM---TYTSMIAGYGMQGEGQAALKLFEEMNN 533

Query: 550 RQFKKEQ 556
            Q K + 
Sbjct: 534 FQIKPDH 540


>gi|255585601|ref|XP_002533488.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223526650|gb|EEF28892.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 939

 Score =  298 bits (763), Expect = 6e-78,   Method: Compositional matrix adjust.
 Identities = 161/561 (28%), Positives = 283/561 (50%), Gaps = 66/561 (11%)

Query: 35  EAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVH-LHLKLTQRKTPTTFLSNH 93
           EA+    LL + G+     +L+     CA  K    G+++H L +K T R      ++N 
Sbjct: 361 EALQFFQLLLKSGLGFNEISLSGAFSACASIKGDLDGRQLHSLSVKSTLRSNIC--VANS 418

Query: 94  LISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSW 153
           ++ MY KC +                               +  A  +FD M  RD VSW
Sbjct: 419 ILDMYGKCEA-------------------------------LSEACCMFDEMERRDAVSW 447

Query: 154 NTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLV 213
           N +I  + ++G  EE L  +  + R  +  ++F++  +L  C   + L    ++H +++ 
Sbjct: 448 NAVIAAHEQNGNEEETLNLFASMLRLRMEPDQFTYGSVLKACSSQQALNSGMEIHNRIIK 507

Query: 214 TGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKL 273
           +G   +  +  +++D Y KCG +                               E A K+
Sbjct: 508 SGLGLDSFVGGALIDMYCKCGMI-------------------------------EEAKKI 536

Query: 274 FNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSL 333
            + + ++  VSW  +IAG+T     + A   F  M+ + ++P+  T++  L ACA++ S+
Sbjct: 537 HDRIEQQTMVSWNAIIAGFTLLKHSEDAHSFFYEMLKMSVKPDNFTYAIVLDACANLASV 596

Query: 334 KHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISA 393
             GKQ+HG +I+    S+  + S+L+DMYSKCG + D   VF+   NK + + WN MI  
Sbjct: 597 GLGKQIHGQIIKLELHSDVYITSTLVDMYSKCGNMQDSALVFEKAPNK-DFVTWNAMICG 655

Query: 394 LTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIP 453
             QHG  E+A+  F  M   +V+P+  T   IL AC H G + +GL YF +M  + G+ P
Sbjct: 656 YAQHGLGEEALGYFERMQLENVRPNHATFVSILRACAHMGFIDKGLHYFNAMLTEYGLEP 715

Query: 454 NQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQL 513
             EH++C+I+++ ++G   + +  +++MP+E D+ +W  L  +C+IHGNI++  K  + +
Sbjct: 716 QIEHYSCMIDIIGRSGRISEALKLIQEMPFEADAVIWRTLLSICKIHGNIEIAEKATNAI 775

Query: 514 IDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVS 573
           +   P+ S+   LLS+IY+  G    V ++R+++   + KKE   SWIE++++VHAF V 
Sbjct: 776 LQLEPEDSSACILLSNIYADAGMWGKVSEMRKMMRYNKLKKEPGCSWIEVKDEVHAFLVG 835

Query: 574 DSLHPMRDVLYSVLEQLAGQM 594
           +  HP  + +Y +L  L  +M
Sbjct: 836 NKTHPRYEEIYKILSVLLDEM 856



 Score =  201 bits (510), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 132/477 (27%), Positives = 238/477 (49%), Gaps = 58/477 (12%)

Query: 39  SLDLLAQRGIRLPAE--TLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLIS 96
           ++  L Q   +LP +  T + I+Q+C++  SLK GK+ H  + +     P  ++SN L+ 
Sbjct: 28  TISTLQQNQTKLPTKIRTFSHIIQECSDYNSLKPGKQAHARM-IVSGFIPDVYISNCLMK 86

Query: 97  MYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTM 156
           MY +C     A KVF+K+  +++ SYN M+SGYA+ G M  A   F +  +RDVVSWN+M
Sbjct: 87  MYLRCSHLNYAYKVFEKMSQRDVISYNTMISGYADAGEMNLANEFFYDTPKRDVVSWNSM 146

Query: 157 IIGYAKSGAVEEGLK-FYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTG 215
           + G+ ++G   + +  F  + R   +  ++ +FA +L  C  LE+  L  QVHG ++  G
Sbjct: 147 LSGFLQNGECRKSIDVFLDMGRSEEVGFDQTTFAVVLKACSVLEDGGLGIQVHGLIVRMG 206

Query: 216 FLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFN 275
           F  +VV  S+++D YAKC  L D+ ++F E   ++ + W                     
Sbjct: 207 FYKDVVTGSALLDMYAKCKRLDDSLKIFSEIPVKNWVCW--------------------- 245

Query: 276 EMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKH 335
                     + +IAG  +N      LELF  M  + I  +Q  ++S   +CA + +LK 
Sbjct: 246 ----------SAIIAGCVQNDEHILGLELFKEMQKVGIGVSQSIYASVFRSCAGLSALKV 295

Query: 336 GKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALT 395
           G Q+H   ++ +F S+  V ++ +DMY+KCG L D +++F+ +  K +   +N +I    
Sbjct: 296 GTQLHAHALKCDFGSDITVGTATLDMYAKCGSLADAQRIFN-SLPKHSLQCYNAIIVGCV 354

Query: 396 QHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQ 455
           ++    +A++ F  +++S +  ++I+L+   +AC       +G        H L +    
Sbjct: 355 RNEKGFEALQFFQLLLKSGLGFNEISLSGAFSACASIKGDLDG-----RQLHSLSVKSTL 409

Query: 456 EHHACL----------IELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGN 502
             + C+           E L++A C   + +++E+     D+  WNA+      +GN
Sbjct: 410 RSNICVANSILDMYGKCEALSEACC---MFDEMER----RDAVSWNAVIAAHEQNGN 459



 Score =  175 bits (443), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 124/471 (26%), Positives = 217/471 (46%), Gaps = 81/471 (17%)

Query: 32  QLSEAISSLDLLAQR---GIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTT 88
           Q  E I  L+L  +    GI +     A + + CA   +LK+G ++H H       +  T
Sbjct: 254 QNDEHILGLELFKEMQKVGIGVSQSIYASVFRSCAGLSALKVGTQLHAHALKCDFGSDIT 313

Query: 89  FLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAER 148
            +    + MY KCGS  DA+++                               F+++ + 
Sbjct: 314 -VGTATLDMYAKCGSLADAQRI-------------------------------FNSLPKH 341

Query: 149 DVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVH 208
            +  +N +I+G  ++    E L+F+++L +  +  NE S +G  + C  ++     RQ+H
Sbjct: 342 SLQCYNAIIVGCVRNEKGFEALQFFQLLLKSGLGFNEISLSGAFSACASIKGDLDGRQLH 401

Query: 209 GQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDME 268
              + +   SN+ +++SI+D Y KC  LS+A  +FD                        
Sbjct: 402 SLSVKSTLRSNICVANSILDMYGKCEALSEACCMFD------------------------ 437

Query: 269 SASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACA 328
                  EM  ++ VSW  +IA + +NG  ++ L LF  M+ LR+ P+Q T+ S L AC+
Sbjct: 438 -------EMERRDAVSWNAVIAAHEQNGNEEETLNLFASMLRLRMEPDQFTYGSVLKACS 490

Query: 329 SIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWN 388
           S  +L  G ++H  +I++    ++ V  +LIDMY KCG + + +++ D  + ++  + WN
Sbjct: 491 SQQALNSGMEIHNRIIKSGLGLDSFVGGALIDMYCKCGMIEEAKKIHDRIE-QQTMVSWN 549

Query: 389 TMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHD 448
            +I+  T   + E A   F++M++ SVKPD  T A++L+AC +   V  G        H 
Sbjct: 550 AIIAGFTLLKHSEDAHSFFYEMLKMSVKPDNFTYAIVLDACANLASVGLG-----KQIH- 603

Query: 449 LGIIPNQEHH------ACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNAL 493
            G I   E H      + L+++ ++ G         EK P   D   WNA+
Sbjct: 604 -GQIIKLELHSDVYITSTLVDMYSKCGNMQDSALVFEKAP-NKDFVTWNAM 652



 Score =  162 bits (411), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 111/424 (26%), Positives = 197/424 (46%), Gaps = 70/424 (16%)

Query: 18  NCLIQSFLSLISKGQLSEAISS-LDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVH- 75
           N ++  FL     G+  ++I   LD+     +     T A +L+ C+  +   LG +VH 
Sbjct: 144 NSMLSGFLQ---NGECRKSIDVFLDMGRSEEVGFDQTTFAVVLKACSVLEDGGLGIQVHG 200

Query: 76  LHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMM 135
           L +++   K   T   + L+ MY KC    D+ K+F +IPVKN                 
Sbjct: 201 LIVRMGFYKDVVT--GSALLDMYAKCKRLDDSLKIFSEIPVKNW---------------- 242

Query: 136 KHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTIC 195
                          V W+ +I G  ++     GL+ +K +++  I  ++  +A +   C
Sbjct: 243 ---------------VCWSAIIAGCVQNDEHILGLELFKEMQKVGIGVSQSIYASVFRSC 287

Query: 196 VKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWT 255
             L  LK+  Q+H   L   F S++ + ++ +D YAKCG L+DA+R              
Sbjct: 288 AGLSALKVGTQLHAHALKCDFGSDITVGTATLDMYAKCGSLADAQR-------------- 333

Query: 256 TMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRP 315
                            +FN +P+ +   +  +I G  RN  G +AL+ F  ++   +  
Sbjct: 334 -----------------IFNSLPKHSLQCYNAIIVGCVRNEKGFEALQFFQLLLKSGLGF 376

Query: 316 NQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVF 375
           N+ + S    ACASI     G+Q+H   +++  RSN  V +S++DMY KC  L++   +F
Sbjct: 377 NEISLSGAFSACASIKGDLDGRQLHSLSVKSTLRSNICVANSILDMYGKCEALSEACCMF 436

Query: 376 DLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLV 435
           D  + + +++ WN +I+A  Q+G +E+ + LF  M+R  ++PD+ T   +L AC+    +
Sbjct: 437 DEME-RRDAVSWNAVIAAHEQNGNEEETLNLFASMLRLRMEPDQFTYGSVLKACSSQQAL 495

Query: 436 QEGL 439
             G+
Sbjct: 496 NSGM 499



 Score =  135 bits (340), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 99/418 (23%), Positives = 191/418 (45%), Gaps = 46/418 (11%)

Query: 17  NNCLIQSFLSLISKGQ-LSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVH 75
           N C+  S L +  K + LSEA    D + +R        +A   Q   E ++L L   + 
Sbjct: 412 NICVANSILDMYGKCEALSEACCMFDEMERRDAVSWNAVIAAHEQNGNEEETLNLFASM- 470

Query: 76  LHLKLTQRKTPTTFLSNHLIS-----MYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYA 130
               L  R  P  F    ++           G ++  R +   + + + F    ++  Y 
Sbjct: 471 ----LRLRMEPDQFTYGSVLKACSSQQALNSGMEIHNRIIKSGLGLDS-FVGGALIDMYC 525

Query: 131 NLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAG 190
             GM++ A+ + D + ++ +VSWN +I G+      E+   F+  + + S+  + F++A 
Sbjct: 526 KCGMIEEAKKIHDRIEQQTMVSWNAIIAGFTLLKHSEDAHSFFYEMLKMSVKPDNFTYAI 585

Query: 191 ILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARD 250
           +L  C  L  + L +Q+HGQ++     S+V I+S++VD Y+KCG + D+  +F++   +D
Sbjct: 586 VLDACANLASVGLGKQIHGQIIKLELHSDVYITSTLVDMYSKCGNMQDSALVFEKAPNKD 645

Query: 251 VLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMI 310
            +TW  M+ GYA+                               +GLG++AL  F RM +
Sbjct: 646 FVTWNAMICGYAQ-------------------------------HGLGEEALGYFERMQL 674

Query: 311 LRIRPNQHTFSSCLCACASIVSLKHG-KQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLN 369
             +RPN  TF S L ACA +  +  G    +  L            S +ID+  + G ++
Sbjct: 675 ENVRPNHATFVSILRACAHMGFIDKGLHYFNAMLTEYGLEPQIEHYSCMIDIIGRSGRIS 734

Query: 370 DGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILN 427
           +  ++      + ++++W T++S    HG  E A +  + +++  ++P+  +  ++L+
Sbjct: 735 EALKLIQEMPFEADAVIWRTLLSICKIHGNIEIAEKATNAILQ--LEPEDSSACILLS 790


>gi|224077718|ref|XP_002305377.1| predicted protein [Populus trichocarpa]
 gi|222848341|gb|EEE85888.1| predicted protein [Populus trichocarpa]
          Length = 427

 Score =  298 bits (763), Expect = 6e-78,   Method: Compositional matrix adjust.
 Identities = 156/451 (34%), Positives = 245/451 (54%), Gaps = 40/451 (8%)

Query: 141 LFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEE 200
           LF  M ERDVVSWN+MI G  K G + E  K +                         +E
Sbjct: 3   LFKVMDERDVVSWNSMIRGLLKVGELSEACKLF-------------------------DE 37

Query: 201 LKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSG 260
           + +               + V  ++I+D Y K GE++ A  LF+    R+V++W+TMVSG
Sbjct: 38  MPM--------------KDAVSWNTILDGYVKAGEMNKAFGLFESMPERNVVSWSTMVSG 83

Query: 261 YAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTF 320
           Y K GDME A  LF+ MP KN VSWT +++GY   GL + A+  F +M    ++P+  T 
Sbjct: 84  YCKAGDMEMARMLFDRMPVKNLVSWTIIVSGYAVKGLAKDAIRSFEQMEEAGLKPDDGTV 143

Query: 321 SSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDN 380
            S L +CA    L  GK+VH  + R  ++ +  V ++L+DMY+KCG ++    VF+   +
Sbjct: 144 ISILASCAESGLLGLGKRVHTSIERIRYKCSVNVSNALVDMYAKCGQVDRALSVFNGM-S 202

Query: 381 KENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLT 440
           K++ + WN M+  L  HG+ E+A++LF  M +   +PDK+TL  +L AC H+G V EG+ 
Sbjct: 203 KKDLVSWNCMLQGLAMHGHGEKALQLFSIMRQEGFRPDKVTLVAVLCACVHAGFVDEGIR 262

Query: 441 YFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIH 500
           YF +M  D GI+P+ EH+ C+++LL + G   +    ++ MP E +  +W  L G CR+H
Sbjct: 263 YFNNMERDYGIVPHIEHYGCMVDLLGRGGRLKEAYRLVQSMPVEPNVVIWGTLLGACRMH 322

Query: 501 GNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISW 560
             + +  +V+D L    P     + LLS+I+++ G    V  VR  +     +K    S 
Sbjct: 323 NAVGLAEEVLDCLFKLEPSDPGNYSLLSNIFASAGDWSSVANVRLQMKNFGIQKPSGASS 382

Query: 561 IEIENKVHAFSVSDSLHPMRDVLYSVLEQLA 591
           IE++++VH F+V D  HP  D +Y ++ +L 
Sbjct: 383 IEVDDEVHEFTVFDKSHPKSDKIYQMINRLG 413



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 82/338 (24%), Positives = 150/338 (44%), Gaps = 63/338 (18%)

Query: 92  NHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVV 151
           N +I    K G   +A K+FD++P+K+  S+N +L GY   G M  A  LF++M ER+VV
Sbjct: 16  NSMIRGLLKVGELSEACKLFDEMPMKDAVSWNTILDGYVKAGEMNKAFGLFESMPERNVV 75

Query: 152 SWNTMIIGYAKSGAVE-------------------------------EGLKFYKVLRRFS 180
           SW+TM+ GY K+G +E                               + ++ ++ +    
Sbjct: 76  SWSTMVSGYCKAGDMEMARMLFDRMPVKNLVSWTIIVSGYAVKGLAKDAIRSFEQMEEAG 135

Query: 181 ISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDAR 240
           +  ++ +   IL  C +   L L ++VH  +    +  +V +S+++VD YAKCG++  A 
Sbjct: 136 LKPDDGTVISILASCAESGLLGLGKRVHTSIERIRYKCSVNVSNALVDMYAKCGQVDRAL 195

Query: 241 RLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQK 300
            +F+    +D+++W  M+ G A                                +G G+K
Sbjct: 196 SVFNGMSKKDLVSWNCMLQGLA-------------------------------MHGHGEK 224

Query: 301 ALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRT-NFRSNTIVMSSLI 359
           AL+LF+ M     RP++ T  + LCAC     +  G +    + R      +      ++
Sbjct: 225 ALQLFSIMRQEGFRPDKVTLVAVLCACVHAGFVDEGIRYFNNMERDYGIVPHIEHYGCMV 284

Query: 360 DMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQH 397
           D+  + G L +  ++      + N ++W T++ A   H
Sbjct: 285 DLLGRGGRLKEAYRLVQSMPVEPNVVIWGTLLGACRMH 322



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 75/266 (28%), Positives = 118/266 (44%), Gaps = 50/266 (18%)

Query: 241 RLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQK 300
           RLF   D RDV++W +M+ G  K+G++  A KLF+EMP K+ VSW T++ GY + G   K
Sbjct: 2   RLFKVMDERDVVSWNSMIRGLLKVGELSEACKLFDEMPMKDAVSWNTILDGYVKAGEMNK 61

Query: 301 ALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLID 360
           A  LF  M      P +                                 N +  S+++ 
Sbjct: 62  AFGLFESM------PER---------------------------------NVVSWSTMVS 82

Query: 361 MYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKI 420
            Y K G +   R +FD    K N + W  ++S     G  + AIR F  M  + +KPD  
Sbjct: 83  GYCKAGDMEMARMLFDRMPVK-NLVSWTIIVSGYAVKGLAKDAIRSFEQMEEAGLKPDDG 141

Query: 421 TLAVILNACTHSGLVQEGL---TYFESMTHDLGI-IPNQEHHACLIELLAQAGCSDQLMN 476
           T+  IL +C  SGL+  G    T  E + +   + + N      L+++ A+ G  D+ ++
Sbjct: 142 TVISILASCAESGLLGLGKRVHTSIERIRYKCSVNVSN-----ALVDMYAKCGQVDRALS 196

Query: 477 QLEKMPYEHDSYLWNALHGVCRIHGN 502
               M  + D   WN +     +HG+
Sbjct: 197 VFNGMS-KKDLVSWNCMLQGLAMHGH 221



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 57/170 (33%), Positives = 89/170 (52%), Gaps = 7/170 (4%)

Query: 13  KNLPNNCLIQSFLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGK 72
           KNL +  +I S  ++  KG   +AI S + + + G++    T+  IL  CAES  L LGK
Sbjct: 103 KNLVSWTIIVSGYAV--KGLAKDAIRSFEQMEEAGLKPDDGTVISILASCAESGLLGLGK 160

Query: 73  RVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANL 132
           RVH  ++  + K     +SN L+ MY KCG    A  VF+ +  K+L S+N ML G A  
Sbjct: 161 RVHTSIERIRYKCSVN-VSNALVDMYAKCGQVDRALSVFNGMSKKDLVSWNCMLQGLAMH 219

Query: 133 GMMKHARNLFDNMAER----DVVSWNTMIIGYAKSGAVEEGLKFYKVLRR 178
           G  + A  LF  M +     D V+   ++     +G V+EG++++  + R
Sbjct: 220 GHGEKALQLFSIMRQEGFRPDKVTLVAVLCACVHAGFVDEGIRYFNNMER 269


>gi|297607983|ref|NP_001061009.2| Os08g0153600 [Oryza sativa Japonica Group]
 gi|255678154|dbj|BAF22923.2| Os08g0153600 [Oryza sativa Japonica Group]
          Length = 551

 Score =  298 bits (763), Expect = 6e-78,   Method: Compositional matrix adjust.
 Identities = 176/518 (33%), Positives = 270/518 (52%), Gaps = 47/518 (9%)

Query: 81  TQRKTPTTFLSNHLISMYFKC-GSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHAR 139
           T RKT  T+  N L++ Y +  G   DAR +FD+IP  +  SYN +LS +   G    AR
Sbjct: 43  TPRKTTATY--NCLLAGYARALGRLADARHLFDRIPTPDAVSYNTLLSCHFASGDADGAR 100

Query: 140 NLFDNMAERDVVSWNTMIIGYAKSGAVEEGLK-FYKVLRRFSISCNEFSFAGILTICVKL 198
            LF +M  RDVVSWNTM+ G +KSGAVEE    F  +  R S+S N              
Sbjct: 101 RLFASMPVRDVVSWNTMVSGLSKSGAVEEAKAVFLAMPVRNSVSWN-------------- 146

Query: 199 EELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLF-DETDARDVLTWTTM 257
                        +V+GF              A   ++S A   F +  +  D + WT M
Sbjct: 147 ------------AMVSGF--------------ACSRDMSAAEEWFRNAPEKGDAVLWTAM 180

Query: 258 VSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMI-LRIRPN 316
           VSGY  +G++  A + F  MP +N VSW  ++AGY +N     AL LF  M+    ++PN
Sbjct: 181 VSGYMDIGNVVKAIEYFEAMPVRNLVSWNAVVAGYVKNSHADDALRLFRTMVREANVQPN 240

Query: 317 QHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFD 376
             T SS L  C+++ +L  GKQ+H + ++     N  V +SL+ MY KCG L+   ++F 
Sbjct: 241 ASTLSSVLLGCSNLSALGFGKQIHQWCMKLPLSRNLTVGTSLVSMYCKCGDLSSACKLFG 300

Query: 377 LTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQ 436
               ++  + WN MIS   QHG  ++AI LF  M    V+P+ IT   +L AC H+GL  
Sbjct: 301 EMHTRD-VVAWNAMISGYAQHGDGKEAINLFERMKDEGVEPNWITFVAVLTACIHTGLCD 359

Query: 437 EGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGV 496
            G+  FE M    GI P  +H++C+++LL +AG  ++ ++ +  MP+E     +  L   
Sbjct: 360 FGIRCFEGMQELYGIEPRVDHYSCMVDLLCRAGKLERAVDLIRSMPFEPHPSAYGTLLAA 419

Query: 497 CRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQ 556
           CR++ N++       +LI+++PQS+  +  L++IY+   +   V +VR+ + +    K  
Sbjct: 420 CRVYKNLEFAELAAGKLIEKDPQSAGAYVQLANIYAGANQWDDVSRVRRWMKDNAVVKTP 479

Query: 557 AISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQM 594
             SWIEI+  +H F  +D LHP   +++  L QLA +M
Sbjct: 480 GYSWIEIKGVMHEFRSNDRLHPQLYLIHEKLGQLAERM 517



 Score = 62.8 bits (151), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 38/110 (34%), Positives = 62/110 (56%), Gaps = 8/110 (7%)

Query: 52  AETLAFILQQCAESKSLKLGKRVH---LHLKLTQRKTPTTFLSNHLISMYFKCGSDVDAR 108
           A TL+ +L  C+   +L  GK++H   + L L++  T    +   L+SMY KCG    A 
Sbjct: 241 ASTLSSVLLGCSNLSALGFGKQIHQWCMKLPLSRNLT----VGTSLVSMYCKCGDLSSAC 296

Query: 109 KVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDV-VSWNTMI 157
           K+F ++  +++ ++N M+SGYA  G  K A NLF+ M +  V  +W T +
Sbjct: 297 KLFGEMHTRDVVAWNAMISGYAQHGDGKEAINLFERMKDEGVEPNWITFV 346


>gi|147862014|emb|CAN80898.1| hypothetical protein VITISV_028645 [Vitis vinifera]
          Length = 822

 Score =  298 bits (763), Expect = 6e-78,   Method: Compositional matrix adjust.
 Identities = 169/581 (29%), Positives = 300/581 (51%), Gaps = 41/581 (7%)

Query: 15  LPNNCLIQSFLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRV 74
            P N LI S+   +  G   +A+S+   + ++GIR    T   +L+ C E   L  GK V
Sbjct: 241 FPWNLLISSY---VRNGFCQKALSAYKQMVKKGIRPDNFTYPSVLKACGEELDLGFGKEV 297

Query: 75  HLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGM 134
           H  +  ++ K  +  + N LISMY KCG    AR +FDKIP ++  S+N+M+S YA++GM
Sbjct: 298 HESINASRIKW-SLIVHNALISMYGKCGKVGIARDLFDKIPERDAVSWNSMISVYASMGM 356

Query: 135 MKHARNLFDNMAERDV----VSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAG 190
              A  LF +M   D+    + WNT+  GY ++G  +  L+    +R+     +  +   
Sbjct: 357 WNEAFELFGSMWAEDIELNIIIWNTIAGGYLRTGNYKGALELLSQMRKXGSHLDSVALII 416

Query: 191 ILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARD 250
            L  C  + + KL +++H   + + F     + +S++  Y++C                 
Sbjct: 417 GLGACSHIGDAKLGKEIHSFAIRSCFGEVDTVKNSLITMYSRCK---------------- 460

Query: 251 VLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMI 310
                          D++ A  LF  M  K+ +SW ++I+G       ++A  L   M++
Sbjct: 461 ---------------DLKHAYLLFQLMEAKSLISWNSIISGCCHMDRSEEASFLLREMLL 505

Query: 311 LRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIR-TNFRSNTIVMSSLIDMYSKCGCLN 369
             I PN  T +S L  CA + +L+HGK+ H ++ R  +F+ + ++ ++L+DMY++ G + 
Sbjct: 506 SGIEPNYVTIASVLPLCARVANLQHGKEFHCYMTRREDFKDHLLLWNALVDMYARSGKVL 565

Query: 370 DGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNAC 429
           + R+VFD+   ++  M + +MI+     G  + A++LF +M    +KPD IT+  +L+AC
Sbjct: 566 EARRVFDMLGERDK-MTYTSMIAGYGMQGEGQAALKLFEEMNNFQIKPDHITMIAVLSAC 624

Query: 430 THSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYL 489
           +HSGLV +G   FE M    G+ P+ EH AC+ +L  +AG  ++    +  MPY+    +
Sbjct: 625 SHSGLVTQGQLLFEKMRSLYGLTPHLEHFACMTDLFGRAGLLNKAKEIIRNMPYKPTPAM 684

Query: 490 WNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINE 549
           W  L G CRIH N ++G    ++L++  P++   + L++++Y+A G    + KVR  + +
Sbjct: 685 WATLIGACRIHRNTEIGEWAAEKLLEMKPENPGYYVLIANMYAAAGCWNKLAKVRXFMRD 744

Query: 550 RQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQL 590
              +K    +W+++      F V D+ +   D +Y +LE L
Sbjct: 745 LGVRKAPGCAWVDVGTGFSPFLVDDTSNANADEIYPLLEGL 785



 Score =  169 bits (429), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 136/545 (24%), Positives = 240/545 (44%), Gaps = 76/545 (13%)

Query: 20  LIQSFLSLISKGQLSEAISSLDLL----AQRGIRLPAETLAFILQQCAESKSLKLGKRVH 75
           L+ S     S+G L +A  ++ L+    +     L    ++ +L  C + KSL  G+++H
Sbjct: 138 LLTSLKEFTSRGNLLDAFKTVSLIRLHASSASQDLIVHPISSLLSSCTDVKSLAEGRQLH 197

Query: 76  LHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMM 135
                            H+IS+ F+             I V  L ++      Y+   ++
Sbjct: 198 ----------------GHIISLGFEQ----------HPILVPKLVTF------YSAFNLL 225

Query: 136 KHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTIC 195
             A  + +N        WN +I  Y ++G  ++ L  YK + +  I  + F++  +L  C
Sbjct: 226 VDAHVITENSNILHPFPWNLLISSYVRNGFCQKALSAYKQMVKKGIRPDNFTYPSVLKAC 285

Query: 196 VKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWT 255
            +  +L   ++VH  +  +    ++++ ++++  Y KCG++  AR LFD+   RD ++W 
Sbjct: 286 GEELDLGFGKEVHESINASRIKWSLIVHNALISMYGKCGKVGIARDLFDKIPERDAVSWN 345

Query: 256 TMVSGYAKLGDMESASKLFNEM----PEKNPVSWTTLIAGYTRNGLGQKALELFTRMMIL 311
           +M+S YA +G    A +LF  M     E N + W T+  GY R G  + ALEL ++M   
Sbjct: 346 SMISVYASMGMWNEAFELFGSMWAEDIELNIIIWNTIAGGYLRTGNYKGALELLSQMRKX 405

Query: 312 RIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDG 371
               +       L AC+ I   K GK++H F IR+ F     V +SLI MYS+C  L   
Sbjct: 406 GSHLDSVALIIGLGACSHIGDAKLGKEIHSFAIRSCFGEVDTVKNSLITMYSRCKDLKHA 465

Query: 372 RQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTH 431
             +F L + K + + WN++IS        E+A  L  +M+ S ++P+ +T+A +L  C  
Sbjct: 466 YLLFQLMEAK-SLISWNSIISGCCHMDRSEEASFLLREMLLSGIEPNYVTIASVLPLCAR 524

Query: 432 SGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWN 491
              +Q G  +   MT                    +    D L+             LWN
Sbjct: 525 VANLQHGKEFHCYMTR-------------------REDFKDHLL-------------LWN 552

Query: 492 ALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQ 551
           AL  +    G +   R+V D L +++     T+  + + Y   G+G+   K+ + +N  Q
Sbjct: 553 ALVDMYARSGKVLEARRVFDMLGERDKM---TYTSMIAGYGMQGEGQAALKLFEEMNNFQ 609

Query: 552 FKKEQ 556
            K + 
Sbjct: 610 IKPDH 614


>gi|449453744|ref|XP_004144616.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
 gi|449511814|ref|XP_004164061.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 681

 Score =  298 bits (762), Expect = 7e-78,   Method: Compositional matrix adjust.
 Identities = 168/541 (31%), Positives = 285/541 (52%), Gaps = 72/541 (13%)

Query: 54  TLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDK 113
           TL  +L+ CA   +L+ GK++H                     +  K G  VD       
Sbjct: 116 TLPCVLKGCARLGALQEGKQIH--------------------GLVLKIGFGVDK------ 149

Query: 114 IPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFY 173
                 F  ++++S Y+  G ++  R +FD M ++DVVSWN++I GYA+ G +E  L+ +
Sbjct: 150 ------FVLSSLVSMYSKCGEIELCRKVFDRMEDKDVVSWNSLIDGYARCGEIELALEMF 203

Query: 174 KVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKC 233
           + +       + FS+                                   + ++D  +K 
Sbjct: 204 EEMPEK----DSFSW-----------------------------------TILIDGLSKS 224

Query: 234 GELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYT 293
           G+L  AR +FD    R+ ++W  M++GY K GD  +A +LF++MPE++ V+W ++I GY 
Sbjct: 225 GKLEAARDVFDRMPIRNSVSWNAMINGYMKAGDSNTAKELFDQMPERSLVTWNSMITGYE 284

Query: 294 RNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTI 353
           RN    KAL+LF  M+   I PN  T    + A + +VSL  G+ VH +++++ F+++ +
Sbjct: 285 RNKQFTKALKLFEVMLREDISPNYTTILGAVSAASGMVSLGTGRWVHSYIVKSGFKTDGV 344

Query: 354 VMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRS 413
           + + LI+MYSKCG +    +VF     K+    W ++I  L  HG  EQ + LF +M R+
Sbjct: 345 LGTLLIEMYSKCGSVKSALRVFRSIPKKKLGH-WTSVIVGLGMHGLVEQTLELFDEMCRT 403

Query: 414 SVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQ 473
            +KP  IT   +LNAC+H+G  ++   YF+ MT+D GI P+ EH+ CLI++L +AG  ++
Sbjct: 404 GLKPHAITFIGVLNACSHAGFAEDAHRYFKMMTYDYGIKPSIEHYGCLIDVLCRAGHLEE 463

Query: 474 LMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSA 533
             + +E+MP + +  +W +L    R HGNI MG      LID  P ++  + +LS++Y+A
Sbjct: 464 AKDTIERMPIKANKVIWTSLLSGSRKHGNIRMGEYAAQHLIDLAPDTTGCYVILSNMYAA 523

Query: 534 LGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQ 593
            G    V +VR+++ ++  KK+   S IE +  +H F V D  HP  + +Y  L ++  +
Sbjct: 524 AGLWEKVRQVREMMKKKGMKKDPGCSSIEHQGSIHEFIVGDKSHPQTEEIYIKLCEMKKK 583

Query: 594 M 594
           +
Sbjct: 584 L 584


>gi|27817913|dbj|BAC55678.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|37806252|dbj|BAC99769.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
          Length = 613

 Score =  298 bits (762), Expect = 7e-78,   Method: Compositional matrix adjust.
 Identities = 173/517 (33%), Positives = 270/517 (52%), Gaps = 45/517 (8%)

Query: 81  TQRKTPTTFLSNHLISMYFKC-GSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHAR 139
           T RKT  T+  N L++ Y +  G   DAR +FD+IP  +  SYN +LS +   G    AR
Sbjct: 43  TPRKTTATY--NCLLAGYARALGRLADARHLFDRIPTPDAVSYNTLLSCHFASGDADGAR 100

Query: 140 NLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLE 199
            LF +M  RDVVSWNTM+ G +KSGAVEE    +                  L + V+  
Sbjct: 101 RLFASMPVRDVVSWNTMVSGLSKSGAVEEAKAVF------------------LAMPVR-- 140

Query: 200 ELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLF-DETDARDVLTWTTMV 258
                              N V  +++V  +A   ++S A   F +  +  D + WT MV
Sbjct: 141 -------------------NSVSWNAMVSGFACSRDMSAAEEWFRNAPEKGDAVLWTAMV 181

Query: 259 SGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMI-LRIRPNQ 317
           SGY  +G++  A + F  MP +N VSW  ++AGY +N     AL LF  M+    ++PN 
Sbjct: 182 SGYMDIGNVVKAIEYFEAMPVRNLVSWNAVVAGYVKNSHADDALRLFRTMVREANVQPNA 241

Query: 318 HTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDL 377
            T SS L  C+++ +L  GKQ+H + ++     N  V +SL+ MY KCG L+   ++F  
Sbjct: 242 STLSSVLLGCSNLSALGFGKQIHQWCMKLPLSRNLTVGTSLVSMYCKCGDLSSACKLFGE 301

Query: 378 TDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQE 437
              ++  + WN MIS   QHG  ++AI LF  M    V+P+ IT   +L AC H+GL   
Sbjct: 302 MHTRD-VVAWNAMISGYAQHGDGKEAINLFERMKDEGVEPNWITFVAVLTACIHTGLCDF 360

Query: 438 GLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVC 497
           G+  FE M    GI P  +H++C+++LL +AG  ++ ++ +  MP+E     +  L   C
Sbjct: 361 GIRCFEGMQELYGIEPRVDHYSCMVDLLCRAGKLERAVDLIRSMPFEPHPSAYGTLLAAC 420

Query: 498 RIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQA 557
           R++ N++       +LI+++PQS+  +  L++IY+   +   V +VR+ + +    K   
Sbjct: 421 RVYKNLEFAELAAGKLIEKDPQSAGAYVQLANIYAGANQWDDVSRVRRWMKDNAVVKTPG 480

Query: 558 ISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQM 594
            SWIEI+  +H F  +D LHP   +++  L QLA +M
Sbjct: 481 YSWIEIKGVMHEFRSNDRLHPQLYLIHEKLGQLAERM 517



 Score = 62.8 bits (151), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 39/110 (35%), Positives = 62/110 (56%), Gaps = 8/110 (7%)

Query: 52  AETLAFILQQCAESKSLKLGKRVH---LHLKLTQRKTPTTFLSNHLISMYFKCGSDVDAR 108
           A TL+ +L  C+   +L  GK++H   + L L++  T  T     L+SMY KCG    A 
Sbjct: 241 ASTLSSVLLGCSNLSALGFGKQIHQWCMKLPLSRNLTVGT----SLVSMYCKCGDLSSAC 296

Query: 109 KVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDV-VSWNTMI 157
           K+F ++  +++ ++N M+SGYA  G  K A NLF+ M +  V  +W T +
Sbjct: 297 KLFGEMHTRDVVAWNAMISGYAQHGDGKEAINLFERMKDEGVEPNWITFV 346


>gi|242041125|ref|XP_002467957.1| hypothetical protein SORBIDRAFT_01g037150 [Sorghum bicolor]
 gi|241921811|gb|EER94955.1| hypothetical protein SORBIDRAFT_01g037150 [Sorghum bicolor]
          Length = 650

 Score =  298 bits (762), Expect = 7e-78,   Method: Compositional matrix adjust.
 Identities = 159/506 (31%), Positives = 264/506 (52%), Gaps = 34/506 (6%)

Query: 71  GKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGY- 129
           G++VH H  +        +L N L+ MY  CG    AR+VFD  PV +  S+N +L+ Y 
Sbjct: 125 GRQVHSH-AVKHGFGDNLYLRNALMHMYSACGCVAGARRVFDAGPVWDAVSWNTILATYV 183

Query: 130 ------------------------------ANLGMMKHARNLFDNMAERDVVSWNTMIIG 159
                                         A  GM++ AR +FD    RD  +W  MI  
Sbjct: 184 RDGDVEQAVGVFARMPERSAAAVSSMVALFARTGMVEEARGVFDGAEHRDAFTWTAMISC 243

Query: 160 YAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSN 219
           + ++    E L  +  +R      +E     ++  C K E ++     HG V+  G  S 
Sbjct: 244 FERNDLFVEALAVFSDMREEGWPVDEAVMVSVVAACAKSEVIQNGEVCHGLVVRAGLGSR 303

Query: 220 VVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPE 279
           V + ++++  Y+ C ++  ARRLFD +++ D  +W +M+SGY K G +E A  LFN MP+
Sbjct: 304 VNVQNALIHMYSSCLDVVAARRLFDSSESLDHFSWNSMISGYLKNGRVEDAKALFNVMPD 363

Query: 280 KNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQV 339
           K+ VSW+ +IAG  +N    +AL +F  M    I+P++ T  S + AC ++ +L+ GK V
Sbjct: 364 KDNVSWSAMIAGCVQNNQSSEALTVFDNMRAHEIKPDEVTLVSVISACTNLCALEQGKLV 423

Query: 340 HGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGY 399
           H ++ +  +    ++ +SLIDMY KCGC+    +VFD+ + K  +  WN +I  L  +G 
Sbjct: 424 HEYIRQYQYNITIVLGTSLIDMYMKCGCMEAALEVFDMVEEK-GTPCWNAVIVGLAMNGL 482

Query: 400 DEQAIRLFHDMVRSSVK-PDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHH 458
             +++ +F +M  S +  P +IT   +L+AC H GLV+EG  +F+ M +   IIPN  H+
Sbjct: 483 VTRSLDMFSEMETSGIAVPSEITFTGVLSACRHGGLVEEGRQFFKLMQNKYQIIPNIRHY 542

Query: 459 ACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNP 518
            C+++LL +AG   +  + ++ MP   D   W AL G C  H + ++G +V  +L+  +P
Sbjct: 543 GCMVDLLGRAGYVREAEDLIQSMPMSPDVPAWGALLGACWKHSDSEVGERVGKKLVKLDP 602

Query: 519 QSSATHGLLSSIYSALGKGRLVEKVR 544
                  +LS+IY++ G  + V+ +R
Sbjct: 603 HHDGFQTMLSNIYASEGMWQCVKDLR 628



 Score =  134 bits (337), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 96/416 (23%), Positives = 186/416 (44%), Gaps = 72/416 (17%)

Query: 205 RQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKL 264
           RQVH   +  GF  N+ + ++++  Y+ CG ++ ARR+FD     D ++W T+++ Y + 
Sbjct: 126 RQVHSHAVKHGFGDNLYLRNALMHMYSACGCVAGARRVFDAGPVWDAVSWNTILATYVRD 185

Query: 265 GDMESASKLFNEMPE-------------------------------KNPVSWTTLIAGYT 293
           GD+E A  +F  MPE                               ++  +WT +I+ + 
Sbjct: 186 GDVEQAVGVFARMPERSAAAVSSMVALFARTGMVEEARGVFDGAEHRDAFTWTAMISCFE 245

Query: 294 RNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTI 353
           RN L  +AL +F+ M       ++    S + ACA    +++G+  HG ++R    S   
Sbjct: 246 RNDLFVEALAVFSDMREEGWPVDEAVMVSVVAACAKSEVIQNGEVCHGLVVRAGLGSRVN 305

Query: 354 VMSSLIDMYSKC-------------------------------GCLNDGRQVFDLTDNKE 382
           V ++LI MYS C                               G + D + +F++  +K+
Sbjct: 306 VQNALIHMYSSCLDVVAARRLFDSSESLDHFSWNSMISGYLKNGRVEDAKALFNVMPDKD 365

Query: 383 NSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGL--- 439
           N + W+ MI+   Q+    +A+ +F +M    +KPD++TL  +++ACT+   +++G    
Sbjct: 366 N-VSWSAMIAGCVQNNQSSEALTVFDNMRAHEIKPDEVTLVSVISACTNLCALEQGKLVH 424

Query: 440 TYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRI 499
            Y     +++ I+        LI++  + GC +  +   + M  E  +  WNA+     +
Sbjct: 425 EYIRQYQYNITIVLGTS----LIDMYMKCGCMEAALEVFD-MVEEKGTPCWNAVIVGLAM 479

Query: 500 HGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKE 555
           +G +     +  ++ + +  +  +    + + SA   G LVE+ RQ     Q K +
Sbjct: 480 NGLVTRSLDMFSEM-ETSGIAVPSEITFTGVLSACRHGGLVEEGRQFFKLMQNKYQ 534



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 99/400 (24%), Positives = 167/400 (41%), Gaps = 75/400 (18%)

Query: 35  EAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHL 94
           EA++    + + G  +    +  ++  CA+S+ ++ G+  H  L +         + N L
Sbjct: 252 EALAVFSDMREEGWPVDEAVMVSVVAACAKSEVIQNGEVCH-GLVVRAGLGSRVNVQNAL 310

Query: 95  ISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWN 154
           I MY  C   V AR++FD     + FS+N+M+SGY   G ++ A+ LF+ M ++D VSW+
Sbjct: 311 IHMYSSCLDVVAARRLFDSSESLDHFSWNSMISGYLKNGRVEDAKALFNVMPDKDNVSWS 370

Query: 155 TMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVT 214
            MI G  ++    E L  +  +R   I  +E +   +++ C  L  L+  + VH  +   
Sbjct: 371 AMIAGCVQNNQSSEALTVFDNMRAHEIKPDEVTLVSVISACTNLCALEQGKLVHEYIRQY 430

Query: 215 GFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLF 274
            +   +V+ +S++D Y KCG +  A  +FD  + +    W  ++ G A            
Sbjct: 431 QYNITIVLGTSLIDMYMKCGCMEAALEVFDMVEEKGTPCWNAVIVGLAM----------- 479

Query: 275 NEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIR-PNQHTFSSCLCACASIVSL 333
                               NGL  ++L++F+ M    I  P++ TF+  L AC      
Sbjct: 480 --------------------NGLVTRSLDMFSEMETSGIAVPSEITFTGVLSAC------ 513

Query: 334 KHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNK----ENSMLWNT 389
           +HG                             G + +GRQ F L  NK     N   +  
Sbjct: 514 RHG-----------------------------GLVEEGRQFFKLMQNKYQIIPNIRHYGC 544

Query: 390 MISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNAC 429
           M+  L + GY  +A  L   M  S   PD      +L AC
Sbjct: 545 MVDLLGRAGYVREAEDLIQSMPMS---PDVPAWGALLGAC 581



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 63/243 (25%), Positives = 104/243 (42%), Gaps = 34/243 (13%)

Query: 206 QVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLG 265
           ++H Q L +G L+         DAYA                A  +L +TT  +    L 
Sbjct: 22  EIHAQFLASGLLA---------DAYA----------------ASRLLLFTTSATAARLLP 56

Query: 266 D-MESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCL 324
             +  + +LF  +   N  +  TLI    R GL      L+  M      P+ +T     
Sbjct: 57  QPLHHSLQLFRLVRSPNAFTCNTLIRAALRQGLPHLCFPLYASM---PAAPDTYTHPLLA 113

Query: 325 CACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENS 384
            ACA+    + G+QVH   ++  F  N  + ++L+ MYS CGC+   R+VFD      ++
Sbjct: 114 AACAARGDAREGRQVHSHAVKHGFGDNLYLRNALMHMYSACGCVAGARRVFD-AGPVWDA 172

Query: 385 MLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFES 444
           + WNT+++   + G  EQA+ +F  M   S       +A+       +G+V+E    F+ 
Sbjct: 173 VSWNTILATYVRDGDVEQAVGVFARMPERSAAAVSSMVALF----ARTGMVEEARGVFDG 228

Query: 445 MTH 447
             H
Sbjct: 229 AEH 231


>gi|449475140|ref|XP_004154387.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Cucumis sativus]
 gi|449522468|ref|XP_004168248.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Cucumis sativus]
          Length = 574

 Score =  298 bits (762), Expect = 7e-78,   Method: Compositional matrix adjust.
 Identities = 171/542 (31%), Positives = 278/542 (51%), Gaps = 67/542 (12%)

Query: 56  AFILQQCAESKSLKLGKRVHLHLKLTQRKTP-TTFLSNHLISMYFKCGSDVDARKVFDKI 114
           A +LQ C   K+++ GK+  LH ++ Q        L+  L+++Y  C S  +A  +FD+I
Sbjct: 5   ASLLQSCVVRKAIEPGKQ--LHARICQVGISFNPLLATKLVNLYCICNSLTNAHLLFDRI 62

Query: 115 PVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYK 174
                                   RNLF          WN MI GYA +G  E  +  Y 
Sbjct: 63  S----------------------KRNLF---------LWNVMIRGYAWNGPYELAISLYY 91

Query: 175 VLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCG 234
            +R + +  ++F+F  +L  C  L  ++  +++H  V+ +G  S+V + ++++D YAKCG
Sbjct: 92  QMRDYGLVPDKFTFPFVLKACSALSAMEEGKKIHKDVIRSGLESDVFVGAALIDMYAKCG 151

Query: 235 ELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTR 294
            +  AR++FD+ D RDV+ W +M                               +A Y++
Sbjct: 152 CVESARQVFDKIDERDVVCWNSM-------------------------------LATYSQ 180

Query: 295 NGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIV 354
           NG   ++L L   M    ++P + TF   + A A    L  GK++HG+  R  F SN  V
Sbjct: 181 NGQPDESLALCRVMAFNGLKPTEGTFVISIAASADNGLLPQGKELHGYSWRHGFESNDKV 240

Query: 355 MSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSS 414
            ++L+DMY+K G +N  R +F+L + K   + WN MI+    HG+  +A+ LF +M +  
Sbjct: 241 KTALMDMYAKSGSVNVARSLFELLEEKR-VVSWNAMITGYAMHGHANEALDLFKEM-KGK 298

Query: 415 VKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQL 474
           V PD IT   +L AC+H GL+ EG  +F SM  D  I P  +H+ C+I+LL   G  ++ 
Sbjct: 299 VLPDHITFVGVLAACSHGGLLNEGKMHFRSMISDFNIWPTVQHYTCMIDLLGHCGRLEEA 358

Query: 475 MNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSAL 534
              + +M  E D+ +W AL   C+IHGN++MG   +++L++  P     + +LS++Y+  
Sbjct: 359 YKLIMEMRVEPDAGVWGALLHSCKIHGNVEMGELALEKLVELEPDDGGNYVILSNMYAQA 418

Query: 535 GKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQM 594
           GK   V ++R L+  +  KK  A SWIE+ NKVHAF   D+ HP  + +Y+ L++    M
Sbjct: 419 GKWDGVARLRDLMMNKGLKKSIACSWIEVGNKVHAFLSEDTSHPKSEAIYAELKRTGKLM 478

Query: 595 GE 596
            E
Sbjct: 479 KE 480



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 83/315 (26%), Positives = 158/315 (50%), Gaps = 34/315 (10%)

Query: 188 FAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETD 247
           +A +L  CV  + ++  +Q+H ++   G   N ++++ +V+ Y  C  L++A  LFD   
Sbjct: 4   YASLLQSCVVRKAIEPGKQLHARICQVGISFNPLLATKLVNLYCICNSLTNAHLLFDRIS 63

Query: 248 ARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTR 307
            R++  W  M+ GYA                      W         NG  + A+ L+ +
Sbjct: 64  KRNLFLWNVMIRGYA----------------------W---------NGPYELAISLYYQ 92

Query: 308 MMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGC 367
           M    + P++ TF   L AC+++ +++ GK++H  +IR+   S+  V ++LIDMY+KCGC
Sbjct: 93  MRDYGLVPDKFTFPFVLKACSALSAMEEGKKIHKDVIRSGLESDVFVGAALIDMYAKCGC 152

Query: 368 LNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILN 427
           +   RQVFD  D ++  + WN+M++  +Q+G  ++++ L   M  + +KP + T  + + 
Sbjct: 153 VESARQVFDKIDERD-VVCWNSMLATYSQNGQPDESLALCRVMAFNGLKPTEGTFVISIA 211

Query: 428 ACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDS 487
           A   +GL+ +G       +   G   N +    L+++ A++G S  +   L ++  E   
Sbjct: 212 ASADNGLLPQG-KELHGYSWRHGFESNDKVKTALMDMYAKSG-SVNVARSLFELLEEKRV 269

Query: 488 YLWNALHGVCRIHGN 502
             WNA+     +HG+
Sbjct: 270 VSWNAMITGYAMHGH 284



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 92/400 (23%), Positives = 164/400 (41%), Gaps = 71/400 (17%)

Query: 31  GQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFL 90
           G    AIS    +   G+     T  F+L+ C+   +++ GK++H  +  +  ++   F+
Sbjct: 81  GPYELAISLYYQMRDYGLVPDKFTFPFVLKACSALSAMEEGKKIHKDVIRSGLES-DVFV 139

Query: 91  SNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDV 150
              LI MY KCG    AR+VFDKI  +++  +N+ML+                       
Sbjct: 140 GAALIDMYAKCGCVESARQVFDKIDERDVVCWNSMLA----------------------- 176

Query: 151 VSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEE--LKLTRQVH 208
                    Y+++G  +E L   +V+    +   E +F  +++I    +   L   +++H
Sbjct: 177 --------TYSQNGQPDESLALCRVMAFNGLKPTEGTF--VISIAASADNGLLPQGKELH 226

Query: 209 GQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDME 268
           G     GF SN  + ++++D YAK G ++ AR LF+  + + V++W  M++GYA  G   
Sbjct: 227 GYSWRHGFESNDKVKTALMDMYAKSGSVNVARSLFELLEEKRVVSWNAMITGYAMHGHAN 286

Query: 269 SASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACA 328
            A  LF EM  K                                + P+  TF   L AC+
Sbjct: 287 EALDLFKEMKGK--------------------------------VLPDHITFVGVLAACS 314

Query: 329 SIVSLKHGK-QVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLW 387
               L  GK      +   N        + +ID+   CG L +  ++      + ++ +W
Sbjct: 315 HGGLLNEGKMHFRSMISDFNIWPTVQHYTCMIDLLGHCGRLEEAYKLIMEMRVEPDAGVW 374

Query: 388 NTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILN 427
             ++ +   HG  E        +V   ++PD     VIL+
Sbjct: 375 GALLHSCKIHGNVEMGELALEKLVE--LEPDDGGNYVILS 412


>gi|449446466|ref|XP_004140992.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g04780-like [Cucumis sativus]
          Length = 638

 Score =  298 bits (762), Expect = 7e-78,   Method: Compositional matrix adjust.
 Identities = 177/537 (32%), Positives = 278/537 (51%), Gaps = 64/537 (11%)

Query: 58  ILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVK 117
           IL+ CA+ K L  GK  H  + L   KT     SN LI+MY KCGS VD           
Sbjct: 70  ILKLCAKRKLLLQGKACHAQILLMGLKTDL-LTSNILINMYSKCGS-VD----------- 116

Query: 118 NLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLR 177
                               AR +FD M  R +VSWNTMI    ++G   E L     ++
Sbjct: 117 -------------------FARQVFDEMPSRSLVSWNTMIGSLTQNGEENEALDLLLQMQ 157

Query: 178 RFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELS 237
           R     +EF+ + +L  C     L   + +H   +      NV ++++++D YAKCG + 
Sbjct: 158 REGTPFSEFTISSVLCACAAKCALSECQLLHAFAIKAAMDLNVFVATALLDVYAKCGLMK 217

Query: 238 DARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGL 297
           DA  +F+    R V+TW++M +GY +           NEM E                  
Sbjct: 218 DAVCVFESMPDRSVVTWSSMAAGYVQ-----------NEMYE------------------ 248

Query: 298 GQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSS 357
             +AL LF +     ++ +Q   SS +CACA + ++  GKQ++  L ++ F SN  V SS
Sbjct: 249 --QALALFRKAWETGLKHDQFLMSSVICACAGLAAMIEGKQMNALLSKSGFCSNIFVASS 306

Query: 358 LIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKP 417
           LIDMY+KCG + +  +VF   + K N +LWN MIS L++H    + + LF  M +  + P
Sbjct: 307 LIDMYAKCGGIEESYKVFRDVE-KRNVVLWNAMISGLSRHARSLEVMILFEKMQQMGLSP 365

Query: 418 DKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQ 477
           + +T   +L+AC H GLV++G  YF+ MT +  + PN  H++C+++ L++AG   +  + 
Sbjct: 366 NDVTFVSVLSACGHMGLVRKGQKYFDLMTKEHHLAPNVFHYSCMVDTLSRAGQIFEAYDL 425

Query: 478 LEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKG 537
           + K+P+   + +W +L   CR HGN+++      +L D  P +S  + LLS++Y+A GK 
Sbjct: 426 ISKLPFNASASMWGSLLASCRTHGNLELAEVAAKKLFDIEPHNSGNYLLLSNMYAANGKW 485

Query: 538 RLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQM 594
             V K+R+L+ E   KKE+  SWIEI++KVH F V +  HP    +YS L ++  ++
Sbjct: 486 DEVAKMRKLLKESDVKKERGKSWIEIKDKVHLFMVGERNHPKIVEIYSKLNEVMDEL 542


>gi|356511287|ref|XP_003524358.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Glycine max]
          Length = 674

 Score =  298 bits (762), Expect = 7e-78,   Method: Compositional matrix adjust.
 Identities = 182/594 (30%), Positives = 292/594 (49%), Gaps = 59/594 (9%)

Query: 19  CLIQSFLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVH--- 75
           C+I+ +    S G L  +++S +LL   GI         +L+     K   L + +H   
Sbjct: 46  CIIKCY---ASHGLLRHSLASFNLLRSFGISPDRHLFPSLLRASTLFKHFNLAQSLHAAV 102

Query: 76  ----LHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYAN 131
                H  L        + +N L++MY K    +     F +       ++NN  S    
Sbjct: 103 IRLGFHFDL--------YTANALMNMYSKFHPHLSPLHEFPQAR----HNHNNKYSV--- 147

Query: 132 LGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGI 191
              +   R LFD M  RDVVSWNT+I G A++G  EE L   K + + ++  + F+ + I
Sbjct: 148 --KIDSVRKLFDRMPVRDVVSWNTVIAGNAQNGMYEEALNMVKEMGKENLRPDSFTLSSI 205

Query: 192 LTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDV 251
           L I  +   +   +++HG  +  GF  +V I SS++D Y                     
Sbjct: 206 LPIFTEHANVTKGKEIHGYAIRHGFDKDVFIGSSLIDMY--------------------- 244

Query: 252 LTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMIL 311
                     AK   +E +   F+ +  ++ +SW ++IAG  +NG   + L  F RM+  
Sbjct: 245 ----------AKCTQVELSVCAFHLLSNRDAISWNSIIAGCVQNGRFDQGLGFFRRMLKE 294

Query: 312 RIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDG 371
           +++P Q +FSS + ACA + +L  GKQ+H ++IR  F  N  + SSL+DMY+KCG +   
Sbjct: 295 KVKPMQVSFSSVIPACAHLTALNLGKQLHAYIIRLGFDDNKFIASSLLDMYAKCGNIKMA 354

Query: 372 RQVFDLTDNKENSML-WNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACT 430
           R +F+  +  +  M+ W  +I     HG+   A+ LF +M+   VKP  +    +L AC+
Sbjct: 355 RYIFNKIEMCDRDMVSWTAIIMGCAMHGHALDAVSLFEEMLVDGVKPCYVAFMAVLTACS 414

Query: 431 HSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLW 490
           H+GLV EG  YF SM  D G+ P  EH+A + +LL +AG  ++  + +  M  E    +W
Sbjct: 415 HAGLVDEGWKYFNSMQRDFGVAPGLEHYAAVADLLGRAGRLEEAYDFISNMGEEPTGSVW 474

Query: 491 NALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINER 550
           + L   CR H NI++  KVV++++  +P +   H ++S+IYSA  + R   K+R  + + 
Sbjct: 475 STLLAACRAHKNIELAEKVVNKILLVDPGNMGAHVIMSNIYSAAQRWRDAAKLRVRMRKT 534

Query: 551 QFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQMGEDAPSLDAD 604
             KK  A SWIE+ NKVH F   D  HP  D +   L  L  QM ++   LD +
Sbjct: 535 GLKKTPACSWIEVGNKVHTFLAGDKSHPYYDKINEALNILLEQMEKEGYVLDTN 588



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 94/391 (24%), Positives = 174/391 (44%), Gaps = 60/391 (15%)

Query: 137 HARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICV 196
           HA+ +    A    ++W  +I  YA  G +   L  + +LR F IS +   F  +L    
Sbjct: 28  HAQIVKTTKATPHSLAWICIIKCYASHGLLRHSLASFNLLRSFGISPDRHLFPSLLRAST 87

Query: 197 KLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAK----------------------CG 234
             +   L + +H  V+  GF  ++  ++++++ Y+K                        
Sbjct: 88  LFKHFNLAQSLHAAVIRLGFHFDLYTANALMNMYSKFHPHLSPLHEFPQARHNHNNKYSV 147

Query: 235 ELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTR 294
           ++   R+LFD    RDV++W T+++G A+ G  E A  +  EM ++N             
Sbjct: 148 KIDSVRKLFDRMPVRDVVSWNTVIAGNAQNGMYEEALNMVKEMGKEN------------- 194

Query: 295 NGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIV 354
                             +RP+  T SS L       ++  GK++HG+ IR  F  +  +
Sbjct: 195 ------------------LRPDSFTLSSILPIFTEHANVTKGKEIHGYAIRHGFDKDVFI 236

Query: 355 MSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSS 414
            SSLIDMY+KC  +      F L  N++ ++ WN++I+   Q+G  +Q +  F  M++  
Sbjct: 237 GSSLIDMYAKCTQVELSVCAFHLLSNRD-AISWNSIIAGCVQNGRFDQGLGFFRRMLKEK 295

Query: 415 VKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAG---CS 471
           VKP +++ + ++ AC H   +  G     +    LG   N+   + L+++ A+ G    +
Sbjct: 296 VKPMQVSFSSVIPACAHLTALNLG-KQLHAYIIRLGFDDNKFIASSLLDMYAKCGNIKMA 354

Query: 472 DQLMNQLEKMPYEHDSYLWNALHGVCRIHGN 502
             + N++E    + D   W A+   C +HG+
Sbjct: 355 RYIFNKIEMC--DRDMVSWTAIIMGCAMHGH 383


>gi|326519098|dbj|BAJ96548.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 624

 Score =  298 bits (762), Expect = 8e-78,   Method: Compositional matrix adjust.
 Identities = 171/571 (29%), Positives = 284/571 (49%), Gaps = 65/571 (11%)

Query: 34  SEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNH 93
           S  +  LDLL    +          +  CA+SK+L+  ++VH HL  + R     FL N 
Sbjct: 33  SAVLRDLDLLDAGELAPTPRVYHTFITACAQSKNLEDARKVHAHLA-SSRFAGDAFLDNS 91

Query: 94  LISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSW 153
           LI +Y KCGS ++ARKV                               FD M  +D+VSW
Sbjct: 92  LIHLYCKCGSVLEARKV-------------------------------FDEMRRKDMVSW 120

Query: 154 NTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLV 213
            ++I GYA++   EE +     + +     N F+FA +L       +  + RQ+H   + 
Sbjct: 121 TSLIAGYAQNDMPEEAIGLLPGMLKGRFKPNGFTFASLLKAAGAHADSGIGRQIHALAVK 180

Query: 214 TGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKL 273
             +  +V + S+++D YA+C                               G M+ A+ +
Sbjct: 181 CDWHEDVYVGSALLDMYARC-------------------------------GMMDMATAV 209

Query: 274 FNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSL 333
           F+++  KN VSW  LI+G+ R G G+ AL  F  M+         T+SS   + A + +L
Sbjct: 210 FDKLDSKNGVSWNALISGFARKGDGETALMTFAEMLRNGFEATHFTYSSVFSSIARLGAL 269

Query: 334 KHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISA 393
           + GK VH  +I++  +      ++L+DMY+K G + D R+VFD  D+K+  + WNTM++A
Sbjct: 270 EQGKWVHAHMIKSRQKMTAFAGNTLLDMYAKSGSMIDARKVFDRVDDKD-LVTWNTMLTA 328

Query: 394 LTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIP 453
             Q+G  ++A+  F +M +S +  +++T   IL AC+H GLV+EG  YFE M  +  + P
Sbjct: 329 FAQYGLGKEAVSHFEEMRKSGIYLNQVTFLCILTACSHGGLVKEGKRYFE-MMKEYDLEP 387

Query: 454 NQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQL 513
             +H   ++ LL +AG  +  +  + KMP E  + +W AL   CR+H N  +G+   D +
Sbjct: 388 EIDHFVTVVALLGRAGLLNFALVFIFKMPIEPTAAVWGALLAACRMHKNAKVGQFAADHV 447

Query: 514 IDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVS 573
            + +P  S    LL +IY++ G+     +VR+++     KKE A SW+E+EN VH F  +
Sbjct: 448 FELDPDDSGPPVLLYNIYASTGQWDAAARVRRIMKTTGVKKEPACSWVEMENSVHMFVAN 507

Query: 574 DSLHPMRDVLYSVLEQLAGQMGEDAPSLDAD 604
           D  HP  + +Y +  Q++ ++ ++    D D
Sbjct: 508 DDTHPRAEEIYKMWGQISKKIRKEGYVPDMD 538



 Score = 85.1 bits (209), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 70/282 (24%), Positives = 133/282 (47%), Gaps = 17/282 (6%)

Query: 18  NCLIQSFLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLH 77
           N LI  F     KG    A+ +   + + G      T + +    A   +L+ GK VH H
Sbjct: 222 NALISGF---ARKGDGETALMTFAEMLRNGFEATHFTYSSVFSSIARLGALEQGKWVHAH 278

Query: 78  LKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKH 137
           + +  R+  T F  N L+ MY K GS +DARKVFD++  K+L ++N ML+ +A  G+ K 
Sbjct: 279 M-IKSRQKMTAFAGNTLLDMYAKSGSMIDARKVFDRVDDKDLVTWNTMLTAFAQYGLGKE 337

Query: 138 ARNLFDNMAERDV----VSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILT 193
           A + F+ M +  +    V++  ++   +  G V+EG +++++++ + +      F  ++ 
Sbjct: 338 AVSHFEEMRKSGIYLNQVTFLCILTACSHGGLVKEGKRYFEMMKEYDLEPEIDHFVTVVA 397

Query: 194 ICVK--LEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDV 251
           +  +  L    L       +  T  +   ++++  +   AK G+ + A  +F E D  D 
Sbjct: 398 LLGRAGLLNFALVFIFKMPIEPTAAVWGALLAACRMHKNAKVGQFA-ADHVF-ELDPDDS 455

Query: 252 LTWTTMVSGYAKLGDMESASKLFNEMP----EKNPV-SWTTL 288
                + + YA  G  ++A+++   M     +K P  SW  +
Sbjct: 456 GPPVLLYNIYASTGQWDAAARVRRIMKTTGVKKEPACSWVEM 497


>gi|413918675|gb|AFW58607.1| hypothetical protein ZEAMMB73_481408 [Zea mays]
          Length = 694

 Score =  298 bits (762), Expect = 8e-78,   Method: Compositional matrix adjust.
 Identities = 173/579 (29%), Positives = 285/579 (49%), Gaps = 69/579 (11%)

Query: 18  NCLIQSFLSLISKGQLSEAISSLDLLAQRGIRLPAE--TLAFILQQCAESKSLKLGKRVH 75
           N L+++FL     G   +A+     +       PA+  T A  L+ C+   +L +G+ V 
Sbjct: 87  NVLMRAFLH---AGHPEDALHLFIEMLHAASACPADQHTAACALKSCSRMCALDVGRGVQ 143

Query: 76  LHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMM 135
            +  + +      F+ + LI MY  CG    AR VFD                       
Sbjct: 144 AY-AVKRGLVADRFVLSSLIHMYASCGDVAAARLVFDA---------------------- 180

Query: 136 KHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTIC 195
                      E  VV WN ++  Y K+G   E ++ +K +    ++ +E +   ++T C
Sbjct: 181 ---------AEESGVVMWNAIVAAYLKNGDWMEVVEMFKGMLEVGVAFDEVTLVSVVTAC 231

Query: 196 VKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWT 255
            ++ + KL + V G V   G   N  + ++++D YAKCGE+  ARRLFD   +RDV+ W+
Sbjct: 232 GRIGDAKLGKWVAGHVDEEGLARNPKLVTALMDMYAKCGEIGKARRLFDGMQSRDVVAWS 291

Query: 256 TMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRP 315
            M+SGY                               T+    ++AL LF+ M + R+ P
Sbjct: 292 AMISGY-------------------------------TQADQCREALGLFSEMQLARVEP 320

Query: 316 NQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVF 375
           N  T  S L ACA + +L+ GK VH ++ R      TI+ ++L+D Y+KCGC++D  + F
Sbjct: 321 NDVTMVSVLSACAVLGALETGKWVHSYVRRKRLSLTTILGTALVDFYAKCGCIDDAVEAF 380

Query: 376 DLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLV 435
           +    K NS  W  +I  +  +G   +A+ LF  M  + ++P  +T   +L AC+HS LV
Sbjct: 381 ESMPVK-NSWTWTALIKGMATNGRGREALELFSSMREAGIEPTDVTFIGVLMACSHSCLV 439

Query: 436 QEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHG 495
           +EG  +F+SM  D GI P  EH+ C+++LL +AG  D+    +  MP E ++ +W AL  
Sbjct: 440 EEGRRHFDSMARDYGIKPRVEHYGCMVDLLGRAGLVDEAYQFIRTMPIEPNAVIWRALLS 499

Query: 496 VCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKE 555
            C +H N+ +G + + Q+I  NP  S  + LLS+IY++ G+ +    VR+ + +R  +K 
Sbjct: 500 SCAVHRNVGIGEEALKQIISLNPSHSGDYVLLSNIYASAGQWKDAAMVRKEMKDRGIEKT 559

Query: 556 QAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQM 594
              S IE++  V  F   DS HP    +Y  +E++ G++
Sbjct: 560 PGCSLIELDGVVFEFFAEDSDHPELREIYQKVEEMIGRI 598



 Score = 81.6 bits (200), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 57/229 (24%), Positives = 109/229 (47%), Gaps = 9/229 (3%)

Query: 270 ASKLFNEMPEKNPVS---WTTLIAGYTRNGLGQKALELFTRMM--ILRIRPNQHTFSSCL 324
           A  LF   P + P+S   +  L+  +   G  + AL LF  M+        +QHT +  L
Sbjct: 69  AVSLFRLGP-RPPLSTPCYNVLMRAFLHAGHPEDALHLFIEMLHAASACPADQHTAACAL 127

Query: 325 CACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENS 384
            +C+ + +L  G+ V  + ++    ++  V+SSLI MY+ CG +   R VFD  + +   
Sbjct: 128 KSCSRMCALDVGRGVQAYAVKRGLVADRFVLSSLIHMYASCGDVAAARLVFDAAE-ESGV 186

Query: 385 MLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFES 444
           ++WN +++A  ++G   + + +F  M+   V  D++TL  ++ AC   G  + G  +   
Sbjct: 187 VMWNAIVAAYLKNGDWMEVVEMFKGMLEVGVAFDEVTLVSVVTACGRIGDAKLG-KWVAG 245

Query: 445 MTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNAL 493
              + G+  N +    L+++ A+ G   +     + M    D   W+A+
Sbjct: 246 HVDEEGLARNPKLVTALMDMYAKCGEIGKARRLFDGM-QSRDVVAWSAM 293


>gi|218201765|gb|EEC84192.1| hypothetical protein OsI_30581 [Oryza sativa Indica Group]
          Length = 715

 Score =  298 bits (762), Expect = 8e-78,   Method: Compositional matrix adjust.
 Identities = 183/598 (30%), Positives = 305/598 (51%), Gaps = 44/598 (7%)

Query: 30  KGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHL-KLTQRKTPTT 88
           +G++ +A+ +   + +    L   T A  L  CA  + L++G +VH  + K      P  
Sbjct: 90  RGRVRDALGTAARMHRSAAGLDEATYASALGACARGRCLRMGWQVHCQVVKSGSDDFPVV 149

Query: 89  FLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMA-E 147
             S  L+  Y  C     AR +FD +   N   ++ M+       ++  A +L   M   
Sbjct: 150 GAS--LLDFYSSCLDLDAARTLFDTLHANNELLWSPMVVALVRFNLLSDALDLLQRMPPS 207

Query: 148 RDVVSWNTMIIGYAKSGAVEEGLK----FYKVLRRFSISCNEFSFAGILTICVKLEELKL 203
           RD+ +W  +I GYA+ GA E   K    F ++L    +  NEF++  +L  CVK+  L+ 
Sbjct: 208 RDLFAWTAIISGYAR-GANEYCCKSLELFVQLLAEDGVMPNEFTYDSVLRACVKMGALEF 266

Query: 204 TRQVHGQVLVTGFLSNVVISSSIVDAYAKCGEL--------------------------- 236
            R +HG ++ +GF S  +I+S++VD Y + G +                           
Sbjct: 267 GRSIHGCLIQSGFESEQLITSALVDLYCRSGAVDDAVMVYNGLQMPSLITSNTLIAGFIS 326

Query: 237 ----SDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGY 292
                DA+ +F +    D  ++  M+  YA  G +E   ++F  MP +N V+  ++++  
Sbjct: 327 MGRTEDAKLVFSQMTEHDSGSYNLMIKAYADEGRLEDCRRMFEMMPRRNMVTLNSMMSVL 386

Query: 293 TRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNT 352
            +NG  ++  +LF ++ +   R +  TF + L ACA+I +++ GK VH  L +T F SN 
Sbjct: 387 LQNGKLEEGRKLFEQIRMKGTRAS--TFPALLHACATIGTIEQGKMVHALLCKTPFESNG 444

Query: 353 IVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVR 412
            V ++L+DMYSKCGC++D R  F    +  N   W ++I+ L Q+G+  +AI  F  M++
Sbjct: 445 YVGTALVDMYSKCGCVSDARAAFSCIMSP-NVASWTSLINGLAQNGHWMEAIVQFARMLK 503

Query: 413 SSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSD 472
           ++VKP++IT   IL A   +GLV +G+ +F SM    G++P  EH+ C ++LL +A    
Sbjct: 504 NNVKPNEITFLGILMASARAGLVNKGMRFFHSM-ESYGVVPTVEHYTCAVDLLGRARRVR 562

Query: 473 QLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYS 532
           +    + KMP   D  +W AL   C    +++MG KV ++L     +  + +  +S+IY+
Sbjct: 563 EAEKFISKMPIPADGVVWGALLTACWYTMDLEMGEKVAEKLFYMGTKHISAYVAMSNIYA 622

Query: 533 ALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQL 590
            LGK   V KVR  +     KKE   SWIE+++ VH F V D  HP R+ +Y +LE L
Sbjct: 623 KLGKWEDVVKVRTRLRSINAKKEPGCSWIEVKDMVHVFLVEDRNHPEREEIYLMLEDL 680



 Score =  161 bits (408), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 111/393 (28%), Positives = 185/393 (47%), Gaps = 44/393 (11%)

Query: 138 ARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVK 197
           AR +FD M  R  +SWN  +  +A+ G V + L     + R +   +E ++A  L  C +
Sbjct: 65  ARGVFDGMRRRAALSWNATVAAHARRGRVRDALGTAARMHRSAAGLDEATYASALGACAR 124

Query: 198 LEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTM 257
              L++  QVH QV+ +G     V+ +S++D Y+ C +L  AR LFD   A + L W+ M
Sbjct: 125 GRCLRMGWQVHCQVVKSGSDDFPVVGASLLDFYSSCLDLDAARTLFDTLHANNELLWSPM 184

Query: 258 VSGYAKLGDMESASKLFNEM-PEKNPVSWTTLIAGYTR--NGLGQKALELFTRMMILR-I 313
           V    +   +  A  L   M P ++  +WT +I+GY R  N    K+LELF +++    +
Sbjct: 185 VVALVRFNLLSDALDLLQRMPPSRDLFAWTAIISGYARGANEYCCKSLELFVQLLAEDGV 244

Query: 314 RPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQ 373
            PN+ T+ S L AC  + +L+ G+ +HG LI++ F S  ++ S+L+D+Y + G ++D   
Sbjct: 245 MPNEFTYDSVLRACVKMGALEFGRSIHGCLIQSGFESEQLITSALVDLYCRSGAVDDAVM 304

Query: 374 VFD-------LTDN-----------------------KENSMLWNTMISALTQHGYDEQA 403
           V++       +T N                       + +S  +N MI A    G  E  
Sbjct: 305 VYNGLQMPSLITSNTLIAGFISMGRTEDAKLVFSQMTEHDSGSYNLMIKAYADEGRLEDC 364

Query: 404 IRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHD---LGIIPNQEHHAC 460
            R+F  M R ++    +TL  +++    +G ++EG   FE +          P   H   
Sbjct: 365 RRMFEMMPRRNM----VTLNSMMSVLLQNGKLEEGRKLFEQIRMKGTRASTFPALLHACA 420

Query: 461 LIELLAQAGCSDQLMNQLEKMPYEHDSYLWNAL 493
            I  + Q      L   L K P+E + Y+  AL
Sbjct: 421 TIGTIEQGKMVHAL---LCKTPFESNGYVGTAL 450



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 78/322 (24%), Positives = 132/322 (40%), Gaps = 51/322 (15%)

Query: 269 SASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACA 328
           +A  +F+ M  +  +SW   +A + R G  + AL    RM       ++ T++S L ACA
Sbjct: 64  AARGVFDGMRRRAALSWNATVAAHARRGRVRDALGTAARMHRSAAGLDEATYASALGACA 123

Query: 329 SIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWN 388
               L+ G QVH  ++++      +V +SL+D YS C  L+  R +FD T +  N +LW+
Sbjct: 124 RGRCLRMGWQVHCQVVKSGSDDFPVVGASLLDFYSSCLDLDAARTLFD-TLHANNELLWS 182

Query: 389 TMISALTQHGYDEQAIRLFHDMVRS----------------------------------- 413
            M+ AL +      A+ L   M  S                                   
Sbjct: 183 PMVVALVRFNLLSDALDLLQRMPPSRDLFAWTAIISGYARGANEYCCKSLELFVQLLAED 242

Query: 414 SVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQ 473
            V P++ T   +L AC   G ++ G +    +    G    Q   + L++L  ++G  D 
Sbjct: 243 GVMPNEFTYDSVLRACVKMGALEFGRSIHGCLIQS-GFESEQLITSALVDLYCRSGAVDD 301

Query: 474 ---LMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLI--DQNPQSSATHGLLS 528
              + N L+ MP    S   N L     I G I MGR    +L+        S ++ L+ 
Sbjct: 302 AVMVYNGLQ-MPSLITS---NTL-----IAGFISMGRTEDAKLVFSQMTEHDSGSYNLMI 352

Query: 529 SIYSALGKGRLVEKVRQLINER 550
             Y+  G+     ++ +++  R
Sbjct: 353 KAYADEGRLEDCRRMFEMMPRR 374


>gi|297800922|ref|XP_002868345.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297314181|gb|EFH44604.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 1047

 Score =  298 bits (762), Expect = 8e-78,   Method: Compositional matrix adjust.
 Identities = 169/573 (29%), Positives = 293/573 (51%), Gaps = 67/573 (11%)

Query: 27  LISKGQLSEAISSLDLLAQRGIR--LPAE-TLAFILQQCAESKSLKLGKRVHLHLKLTQR 83
           L++ G L +  +S  +  Q  I   +P + T   IL+ C     L+LG+++H  +     
Sbjct: 445 LVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQI----- 499

Query: 84  KTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFD 143
              T+F  N  +     C   +D                      YA LG +  A ++  
Sbjct: 500 -IKTSFQLNAYV-----CSVLIDM---------------------YAKLGKLDTAWDILI 532

Query: 144 NMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKL 203
             A +DVVSW TMI GY +    ++ L  ++ +    I  +E      ++ C  L+ LK 
Sbjct: 533 RFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALKE 592

Query: 204 TRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAK 263
            +Q+H Q  V+GF S++   +++V  Y+KCG                             
Sbjct: 593 GQQIHAQACVSGFSSDLPFQNALVTLYSKCG----------------------------- 623

Query: 264 LGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSC 323
             ++E A   F +    + ++W  L++G+ ++G  ++AL +F RM    I  N  TF S 
Sbjct: 624 --NIEEAYLAFEQTEAGDNIAWNALVSGFQQSGNNEEALRVFARMNREGIDSNNFTFGSA 681

Query: 324 LCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKEN 383
           + A +   ++K GKQVH  + +T + S T V +++I MY+KCG ++D ++ F L  + +N
Sbjct: 682 VKAASETANMKQGKQVHAVITKTGYDSETEVCNAIISMYAKCGSISDAKKQF-LELSMKN 740

Query: 384 SMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFE 443
            + WN MI+A ++HG+  +A+  F  M+ S+V+P+ +TL  +L+AC+H GLV +G+ YFE
Sbjct: 741 EVSWNAMINAYSKHGFGSEALDSFDQMIHSNVRPNHVTLVGVLSACSHIGLVDKGIEYFE 800

Query: 444 SMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNI 503
           SM  + G+ P  EH+ C++++L +AG   +  + + +MP E D+ +W  L   C +H N+
Sbjct: 801 SMNTEYGLAPKPEHYVCVVDMLTRAGLLSRAKDFILEMPIEPDALVWRTLLSACVVHKNM 860

Query: 504 DMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEI 563
           ++G      L++  P+ SAT+ LLS++Y+   K    +  RQ + E+  KKE   SWIE+
Sbjct: 861 EIGEFAAHHLLELEPEDSATYVLLSNLYAVCRKWDARDLTRQKMKEKGVKKEPGQSWIEV 920

Query: 564 ENKVHAFSVSDSLHPMRDVLYSVLEQLAGQMGE 596
           +N +H+F V D  HP+ D ++   + L  +  E
Sbjct: 921 KNSIHSFYVGDQNHPLADEIHEYFKDLTKRASE 953



 Score =  166 bits (421), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 128/497 (25%), Positives = 223/497 (44%), Gaps = 52/497 (10%)

Query: 54  TLAFILQQCAES-KSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSD--VDARKV 110
           TL   L QC    K+++L KR+ L         P    SN L S+   C SD  + + + 
Sbjct: 342 TLINGLSQCGYGEKAMELFKRMQL-----DGLEPD---SNTLASLVVACSSDGTLFSGQQ 393

Query: 111 FDKIPVKNLFSYNNMLSG-----YANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGA 165
                 K  F+ N+ + G     YA    ++ A N F      +VV WN M++ Y     
Sbjct: 394 LHAYTTKLGFASNDKIEGALLNLYAKCSDIETALNYFLETEVENVVLWNVMLVAYGLLDD 453

Query: 166 VEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSS 225
           +    + ++ ++   I  N++++  IL  C++L +L+L  Q+H Q++ T F  N  + S 
Sbjct: 454 LRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTSFQLNAYVCSV 513

Query: 226 IVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSW 285
           ++D YAK G+L  A  +      +DV++WTTM+                           
Sbjct: 514 LIDMYAKLGKLDTAWDILIRFAGKDVVSWTTMI--------------------------- 546

Query: 286 TTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIR 345
               AGYT+     KAL  F +M+   IR ++   ++ + ACA + +LK G+Q+H     
Sbjct: 547 ----AGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALKEGQQIHAQACV 602

Query: 346 TNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIR 405
           + F S+    ++L+ +YSKCG + +    F+ T+  +N + WN ++S   Q G +E+A+R
Sbjct: 603 SGFSSDLPFQNALVTLYSKCGNIEEAYLAFEQTEAGDN-IAWNALVSGFQQSGNNEEALR 661

Query: 406 LFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELL 465
           +F  M R  +  +  T    + A + +  +++G      +T   G     E    +I + 
Sbjct: 662 VFARMNREGIDSNNFTFGSAVKAASETANMKQGKQVHAVITKT-GYDSETEVCNAIISMY 720

Query: 466 AQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHG 525
           A+ G       Q  ++  +++   WNA+      HG         DQ+I  N + +  H 
Sbjct: 721 AKCGSISDAKKQFLELSMKNEVS-WNAMINAYSKHGFGSEALDSFDQMIHSNVRPN--HV 777

Query: 526 LLSSIYSALGKGRLVEK 542
            L  + SA     LV+K
Sbjct: 778 TLVGVLSACSHIGLVDK 794



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 109/424 (25%), Positives = 197/424 (46%), Gaps = 35/424 (8%)

Query: 17  NNCLIQSFLSL-ISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKL-GKRV 74
           N CL +  L   + KG L  A+   D + +R I    + +  +  +    K   L G+ V
Sbjct: 102 NACLSEKLLDFYLFKGDLDGALKVFDEMPERTIFTWNKMIKELASRSLSGKVFCLFGRMV 161

Query: 75  HLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGM 134
           + ++   +        +    S+ F     + AR ++  +  K+    N ++  Y+  G 
Sbjct: 162 NENVTPNEGTFSGVLEACRGGSVAFDVVEQIHARIIYQGLG-KSTIVCNPLIDLYSRNGF 220

Query: 135 MKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTI 194
           +  AR +FD +  +D  SW  MI G +K+    E ++ +  +    I    ++F+ +L+ 
Sbjct: 221 VDRARRVFDGLYLKDHSSWVAMISGLSKNECEVEAIRLFCDMYVLGIMPTPYAFSSVLSA 280

Query: 195 CVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTW 254
           C K+E L++  Q+HG VL  GF S+  + ++                             
Sbjct: 281 CKKIESLEIGEQLHGLVLKLGFSSDTYVCNA----------------------------- 311

Query: 255 TTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIR 314
             +VS Y  LG + SA  +F+ M +++ V++ TLI G ++ G G+KA+ELF RM +  + 
Sbjct: 312 --LVSLYFHLGSLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRMQLDGLE 369

Query: 315 PNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQV 374
           P+ +T +S + AC+S  +L  G+Q+H +  +  F SN  +  +L+++Y+KC  +      
Sbjct: 370 PDSNTLASLVVACSSDGTLFSGQQLHAYTTKLGFASNDKIEGALLNLYAKCSDIETALNY 429

Query: 375 FDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGL 434
           F L    EN +LWN M+ A         + R+F  M    + P++ T   IL  C   G 
Sbjct: 430 F-LETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGD 488

Query: 435 VQEG 438
           ++ G
Sbjct: 489 LELG 492



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 99/385 (25%), Positives = 159/385 (41%), Gaps = 75/385 (19%)

Query: 181 ISCNEFSFAGILTICVKLE-ELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDA 239
           I  N  +   +L  C+K    L   R++H Q+L  GF +N  +S  ++D Y   G+L  A
Sbjct: 63  IRPNHQTLKWLLEGCLKTNGSLDEGRKLHSQILKLGFDNNACLSEKLLDFYLFKGDLDGA 122

Query: 240 RRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKN------------------ 281
            ++FDE   R + TW  M+   A          LF  M  +N                  
Sbjct: 123 LKVFDEMPERTIFTWNKMIKELASRSLSGKVFCLFGRMVNENVTPNEGTFSGVLEACRGG 182

Query: 282 ----------------------PVSWTTLIAGYTRNGLGQKA------------------ 301
                                  +    LI  Y+RNG   +A                  
Sbjct: 183 SVAFDVVEQIHARIIYQGLGKSTIVCNPLIDLYSRNGFVDRARRVFDGLYLKDHSSWVAM 242

Query: 302 -------------LELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNF 348
                        + LF  M +L I P  + FSS L AC  I SL+ G+Q+HG +++  F
Sbjct: 243 ISGLSKNECEVEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKLGF 302

Query: 349 RSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFH 408
            S+T V ++L+ +Y   G L     +F    ++ +++ +NT+I+ L+Q GY E+A+ LF 
Sbjct: 303 SSDTYVCNALVSLYFHLGSLISAEHIFS-NMSQRDAVTYNTLINGLSQCGYGEKAMELFK 361

Query: 409 DMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQA 468
            M    ++PD  TLA ++ AC+  G +  G     + T  LG   N +    L+ L A+ 
Sbjct: 362 RMQLDGLEPDSNTLASLVVACSSDGTLFSG-QQLHAYTTKLGFASNDKIEGALLNLYAKC 420

Query: 469 GCSDQLMNQLEKMPYEHDSYLWNAL 493
              +  +N   +   E +  LWN +
Sbjct: 421 SDIETALNYFLETEVE-NVVLWNVM 444



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 47/165 (28%), Positives = 84/165 (50%), Gaps = 8/165 (4%)

Query: 14  NLPNNCLIQSFLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKR 73
           N+  N L+  F      G   EA+     + + GI     T    ++  +E+ ++K GK+
Sbjct: 640 NIAWNALVSGFQQ---SGNNEEALRVFARMNREGIDSNNFTFGSAVKAASETANMKQGKQ 696

Query: 74  VHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLG 133
           VH  +  T   + T  + N +ISMY KCGS  DA+K F ++ +KN  S+N M++ Y+  G
Sbjct: 697 VHAVITKTGYDSETE-VCNAIISMYAKCGSISDAKKQFLELSMKNEVSWNAMINAYSKHG 755

Query: 134 MMKHARNLFDNMAERDVVSWNTMIIGYAKS----GAVEEGLKFYK 174
               A + FD M   +V   +  ++G   +    G V++G+++++
Sbjct: 756 FGSEALDSFDQMIHSNVRPNHVTLVGVLSACSHIGLVDKGIEYFE 800


>gi|297835482|ref|XP_002885623.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297331463|gb|EFH61882.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 624

 Score =  297 bits (761), Expect = 9e-78,   Method: Compositional matrix adjust.
 Identities = 151/474 (31%), Positives = 258/474 (54%), Gaps = 33/474 (6%)

Query: 123 NNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSIS 182
           N +L+ YA  G ++ AR +FD M ERD V+W T+I GY++     + L  +  + RF  S
Sbjct: 90  NTLLNMYAKCGSLEEARKVFDKMPERDFVTWTTLISGYSQHDRPFDALVLFNQMLRFGFS 149

Query: 183 CNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRL 242
            NEF+ + ++             Q+HG  +  GF SNV + S+++D Y + G + DA+ +
Sbjct: 150 PNEFTLSSVIKAAAAERRGCCGHQLHGFCVKCGFDSNVHVGSALLDLYTRYGLMDDAQLV 209

Query: 243 FDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKAL 302
                                          F+ +  +N VSW  LIAG+ R    +KAL
Sbjct: 210 -------------------------------FDALESRNDVSWNALIAGHARRCGTEKAL 238

Query: 303 ELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMY 362
           ELF  M+    RP+  +++S   AC+S   L+ GK VH ++I++  +      ++L+DMY
Sbjct: 239 ELFQGMLREGFRPSHFSYASLFGACSSTGFLEQGKWVHAYMIKSGEKLVAFAGNTLLDMY 298

Query: 363 SKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITL 422
           +K G ++D R++FD    K + + WN++++A  QHG+  +A+  F +M R  ++P++I+ 
Sbjct: 299 AKSGSIHDARKIFDRL-AKRDVVSWNSLLTAYAQHGFGNEAVCWFEEMRRGGIRPNEISF 357

Query: 423 AVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMP 482
             +L AC+HSGL+ EG  Y+E M  D GI+    H+  +++LL +AG  ++ +  +E+MP
Sbjct: 358 LSVLTACSHSGLLDEGWHYYELMKKD-GIVLEAWHYVTIVDLLGRAGDLNRALRFIEEMP 416

Query: 483 YEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEK 542
            E  + +W AL   CR+H N ++G    + + + +P     H +L +IY++ G+     +
Sbjct: 417 IEPTAAIWKALLNACRMHKNTELGAYAAEHVFELDPDDPGPHVILYNIYASGGRWNDAAR 476

Query: 543 VRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQMGE 596
           VR+ + E   KKE A SW+EIEN +H F  +D  HP R+ +    E++  ++ E
Sbjct: 477 VRKKMKESGVKKEPACSWVEIENAIHMFVANDERHPQREEIARKWEEVLAKIKE 530



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 38/116 (32%), Positives = 69/116 (59%), Gaps = 1/116 (0%)

Query: 313 IRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGR 372
           I  ++  +++ L  C     L  G+ VHG LI++ FR + ++ ++L++MY+KCG L + R
Sbjct: 47  IPVDRRFYNTLLKKCTVFKLLTQGRIVHGHLIQSIFRHDLVMNNTLLNMYAKCGSLEEAR 106

Query: 373 QVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNA 428
           +VFD    + + + W T+IS  +QH     A+ LF+ M+R    P++ TL+ ++ A
Sbjct: 107 KVFDKMPER-DFVTWTTLISGYSQHDRPFDALVLFNQMLRFGFSPNEFTLSSVIKA 161


>gi|356514477|ref|XP_003525932.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Glycine max]
          Length = 526

 Score =  297 bits (761), Expect = 9e-78,   Method: Compositional matrix adjust.
 Identities = 161/465 (34%), Positives = 256/465 (55%), Gaps = 16/465 (3%)

Query: 137 HARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICV 196
           +AR++F ++  R+    NTMI GY +  +    +  Y  + +  ++ N ++F  ++  C+
Sbjct: 58  YARSIFRHLTNRNTFMHNTMIRGYLQCRSPLHAVSCYLSMLQNGVAVNNYTFPPLIKACI 117

Query: 197 KLEELK----LTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVL 252
            L        + R VHG V+  G  ++  + S+ ++ Y+   E+  AR LFDET  +DV+
Sbjct: 118 ALLPSSPSNIVGRLVHGHVVKFGLRNDPYVVSAFIEFYSVSREVDTARVLFDETSYKDVV 177

Query: 253 TWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILR 312
             T MV GY K+G+++SA ++F++MPE+N VSW+ ++A Y+R    ++ L LFT M    
Sbjct: 178 LGTAMVDGYGKMGNVKSAREVFDKMPERNAVSWSAMMAAYSRVSDFKEVLALFTEMQNEG 237

Query: 313 IRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGR 372
             PN+    + L ACA + +L  G  VH +  R +  SN I+ ++L+DMYSKCGC+    
Sbjct: 238 TEPNESILVTVLTACAHLGALTQGLWVHSYARRFHLESNPILATALVDMYSKCGCVESAL 297

Query: 373 QVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHS 432
            VFD   +K+    WN MIS    +G   ++++LF  M  S  KP++ T   +L ACTH+
Sbjct: 298 SVFDCIVDKDAGA-WNAMISGEALNGDAGKSLQLFRQMAASRTKPNETTFVAVLTACTHA 356

Query: 433 GLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEH------- 485
            +VQ+GL  FE M+   G++P  EH+AC+I+LL++AG    ++ + EK   E        
Sbjct: 357 KMVQQGLWLFEEMSSVYGVVPRMEHYACVIDLLSRAG----MVEEAEKFMEEKMGGLTAG 412

Query: 486 DSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQ 545
           D+ +W AL   CRIH NI +G +V  +L+D       TH L  +IY   G      KVR 
Sbjct: 413 DANVWGALLNACRIHKNIHVGNRVWKKLVDMGVTDCGTHVLTYNIYREAGWDVEANKVRS 472

Query: 546 LINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQL 590
            I E   KK+   S IE++N+V  F   D  HP    +  +L+ +
Sbjct: 473 RIEEVGMKKKPGCSIIEVDNEVEEFLAGDHSHPQAQEMCKLLDSI 517



 Score =  125 bits (313), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 109/423 (25%), Positives = 181/423 (42%), Gaps = 63/423 (14%)

Query: 11  NRKNLPNNCLIQSFLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQC----AESK 66
           NR    +N +I+ +L   S      A+S    + Q G+ +   T   +++ C      S 
Sbjct: 68  NRNTFMHNTMIRGYLQCRSP---LHAVSCYLSMLQNGVAVNNYTFPPLIKACIALLPSSP 124

Query: 67  SLKLGKRVHLHL-KLTQRKTPTTFLSNHLISMYFKCGSDVD-ARKVFDKIPVKNLFSYNN 124
           S  +G+ VH H+ K   R  P  ++ +  I  Y     +VD AR +FD+   K++     
Sbjct: 125 SNIVGRLVHGHVVKFGLRNDP--YVVSAFIEFY-SVSREVDTARVLFDETSYKDVVLGTA 181

Query: 125 MLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCN 184
           M+ GY  +G +K AR +FD M ER+ VSW+ M+  Y++    +E L  +  ++      N
Sbjct: 182 MVDGYGKMGNVKSAREVFDKMPERNAVSWSAMMAAYSRVSDFKEVLALFTEMQNEGTEPN 241

Query: 185 EFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFD 244
           E     +LT C  L  L     VH         SN ++++++VD Y+KCG +  A  +FD
Sbjct: 242 ESILVTVLTACAHLGALTQGLWVHSYARRFHLESNPILATALVDMYSKCGCVESALSVFD 301

Query: 245 ETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALEL 304
               +D   W  M+SG A  GD                       AG        K+L+L
Sbjct: 302 CIVDKDAGAWNAMISGEALNGD-----------------------AG--------KSLQL 330

Query: 305 FTRMMILRIRPNQHTFSSCLCACASIVSLKHG-------KQVHGFLIRTNFRSNTIVMSS 357
           F +M   R +PN+ TF + L AC     ++ G         V+G + R          + 
Sbjct: 331 FRQMAASRTKPNETTFVAVLTACTHAKMVQQGLWLFEEMSSVYGVVPRMEH------YAC 384

Query: 358 LIDMYSKCGCLNDGRQVFD-----LTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVR 412
           +ID+ S+ G + +  +  +     LT    N  +W  +++A   H       R++  +V 
Sbjct: 385 VIDLLSRAGMVEEAEKFMEEKMGGLTAGDAN--VWGALLNACRIHKNIHVGNRVWKKLVD 442

Query: 413 SSV 415
             V
Sbjct: 443 MGV 445


>gi|297804280|ref|XP_002870024.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297315860|gb|EFH46283.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 871

 Score =  297 bits (761), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 167/574 (29%), Positives = 295/574 (51%), Gaps = 65/574 (11%)

Query: 28  ISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPT 87
           +S G   + +S    +   GI +   T+  +   CA+S+ + LG+ VH    +    +  
Sbjct: 272 VSNGLAEKGLSVFVQMLFSGIEIDLATIVSVFAGCADSRLISLGRAVHC-FGVKACFSRE 330

Query: 88  TFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAE 147
               N L+ MY KCG D+D+ KV                              +F  M+ 
Sbjct: 331 DRFCNTLLDMYSKCG-DLDSAKV------------------------------VFREMSG 359

Query: 148 RDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQV 207
           R VVS+ +MI GYA+ G   E +K ++ +    IS + ++   +L  C +   L   ++V
Sbjct: 360 RSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARNRLLDEGKRV 419

Query: 208 HGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDM 267
           H  +       ++ +S++++D YAKC                               G M
Sbjct: 420 HEWIKENDMGFDIFVSNALMDMYAKC-------------------------------GSM 448

Query: 268 ESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMI-LRIRPNQHTFSSCLCA 326
             A  +F+EM  K+ +SW T+I GY++N    +AL LF  +++  R  P++ T +  L A
Sbjct: 449 REAELVFSEMRVKDIISWNTVIGGYSKNCYANEALSLFNLLLVEKRFSPDERTVACVLPA 508

Query: 327 CASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSML 386
           CAS+ +   G+++HG+++R  + S+  V +SL+DMY+KCG L   R +FD   +K+  + 
Sbjct: 509 CASLSAFDKGREIHGYIMRNGYFSDRHVANSLVDMYAKCGALLLARLLFDDITSKD-LVS 567

Query: 387 WNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMT 446
           W  MI+    HG+ ++AI LF+ M ++ ++PD+I+   +L AC+HSGLV EG  +F  M 
Sbjct: 568 WTVMIAGYGMHGFGKEAIALFNQMRQAGIEPDEISFVSLLYACSHSGLVDEGWRFFNIMR 627

Query: 447 HDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMG 506
           H+  I P  EH+AC++++LA+ G   +    +E MP   D+ +W AL   CRIH ++ + 
Sbjct: 628 HECKIEPTVEHYACIVDMLARTGNLSKAYRFIENMPIPPDATIWGALLCGCRIHHDVKLA 687

Query: 507 RKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENK 566
            +V +++ +  P+++  + L+++IY+   K   V+++R+ I +R  +K    SWIEI+ +
Sbjct: 688 ERVAEKVFELEPENTGYYVLMANIYAEAEKWEEVKRLRKRIGQRGLRKNPGCSWIEIKGR 747

Query: 567 VHAFSVSDSLHPMRDVLYSVLEQLAGQMGEDAPS 600
           V+ F   DS +P  + + + L  +  +M E+  S
Sbjct: 748 VNIFVAGDSSNPETEKIEAFLRGVRARMIEEGYS 781



 Score =  146 bits (369), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 95/348 (27%), Positives = 166/348 (47%), Gaps = 34/348 (9%)

Query: 123 NNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSIS 182
           N++++ Y     +  AR +FD M ERDV+SWN++I GY  +G  E+GL  +  +    I 
Sbjct: 234 NSLVAFYLKNHRVDSARKVFDEMTERDVISWNSIINGYVSNGLAEKGLSVFVQMLFSGIE 293

Query: 183 CNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRL 242
            +  +   +   C     + L R VH   +   F       ++++D Y+KCG+L  A+ +
Sbjct: 294 IDLATIVSVFAGCADSRLISLGRAVHCFGVKACFSREDRFCNTLLDMYSKCGDLDSAKVV 353

Query: 243 FDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKAL 302
           F E   R V+++T+M++GYA+ G    A KLF EM E+                      
Sbjct: 354 FREMSGRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEG--------------------- 392

Query: 303 ELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMY 362
                     I P+ +T ++ L  CA    L  GK+VH ++   +   +  V ++L+DMY
Sbjct: 393 ----------ISPDVYTVTAVLNCCARNRLLDEGKRVHEWIKENDMGFDIFVSNALMDMY 442

Query: 363 SKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFH-DMVRSSVKPDKIT 421
           +KCG + +   VF     K+  + WNT+I   +++ Y  +A+ LF+  +V     PD+ T
Sbjct: 443 AKCGSMREAELVFSEMRVKD-IISWNTVIGGYSKNCYANEALSLFNLLLVEKRFSPDERT 501

Query: 422 LAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAG 469
           +A +L AC       +G      +  + G   ++     L+++ A+ G
Sbjct: 502 VACVLPACASLSAFDKGREIHGYIMRN-GYFSDRHVANSLVDMYAKCG 548



 Score =  143 bits (360), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 105/408 (25%), Positives = 176/408 (43%), Gaps = 66/408 (16%)

Query: 31  GQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFL 90
           G L  A+  L +  +  I     TL  +LQ CA+SKSLK GK V   ++       +  L
Sbjct: 75  GNLKNAVKLLHVSGKWDI--DPRTLCSVLQLCADSKSLKDGKEVDNFIRGNGFVLDSN-L 131

Query: 91  SNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDV 150
            + L  MY  CG                                +K A  +FD +     
Sbjct: 132 GSKLALMYTNCGD-------------------------------LKEASRVFDQVKIEKA 160

Query: 151 VSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQ 210
           + WN ++   AKSG     +  +K +    +  + ++F+ +      L  +    Q+HG 
Sbjct: 161 LFWNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRSVNGGEQLHGY 220

Query: 211 VLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESA 270
           +L +GF     + +S+V  Y     L + R                          ++SA
Sbjct: 221 ILKSGFGERNSVGNSLVAFY-----LKNHR--------------------------VDSA 249

Query: 271 SKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASI 330
            K+F+EM E++ +SW ++I GY  NGL +K L +F +M+   I  +  T  S    CA  
Sbjct: 250 RKVFDEMTERDVISWNSIINGYVSNGLAEKGLSVFVQMLFSGIEIDLATIVSVFAGCADS 309

Query: 331 VSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTM 390
             +  G+ VH F ++  F       ++L+DMYSKCG L+  + VF     + + + + +M
Sbjct: 310 RLISLGRAVHCFGVKACFSREDRFCNTLLDMYSKCGDLDSAKVVFREMSGR-SVVSYTSM 368

Query: 391 ISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEG 438
           I+   + G   +A++LF +M    + PD  T+  +LN C  + L+ EG
Sbjct: 369 IAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARNRLLDEG 416



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 68/292 (23%), Positives = 134/292 (45%), Gaps = 34/292 (11%)

Query: 147 ERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQ 206
           +R V   NT +  + +SG ++  +K   V  ++ I  +  +   +L +C   + LK  ++
Sbjct: 58  DRSVTDANTQLRRFCESGNLKNAVKLLHVSGKWDI--DPRTLCSVLQLCADSKSLKDGKE 115

Query: 207 VHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGD 266
           V   +   GF+ +  + S +   Y  CG+L +A R+FD+      L W  +++  AK GD
Sbjct: 116 VDNFIRGNGFVLDSNLGSKLALMYTNCGDLKEASRVFDQVKIEKALFWNILMNELAKSGD 175

Query: 267 MESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCA 326
                                             ++ LF +MM   +  + +TFS    +
Sbjct: 176 FSG-------------------------------SIGLFKKMMSSGVEMDSYTFSCVSKS 204

Query: 327 CASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSML 386
            +S+ S+  G+Q+HG+++++ F     V +SL+  Y K   ++  R+VFD    ++  + 
Sbjct: 205 FSSLRSVNGGEQLHGYILKSGFGERNSVGNSLVAFYLKNHRVDSARKVFDEMTERD-VIS 263

Query: 387 WNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEG 438
           WN++I+    +G  E+ + +F  M+ S ++ D  T+  +   C  S L+  G
Sbjct: 264 WNSIINGYVSNGLAEKGLSVFVQMLFSGIEIDLATIVSVFAGCADSRLISLG 315


>gi|147772562|emb|CAN67343.1| hypothetical protein VITISV_038220 [Vitis vinifera]
          Length = 732

 Score =  297 bits (761), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 150/473 (31%), Positives = 268/473 (56%), Gaps = 33/473 (6%)

Query: 118 NLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLR 177
           N F  N ++  YA   ++  A+ +FD MAE++V+S+N MI GY+    + E L+ +  +R
Sbjct: 273 NEFVKNGLIDMYAKSNLLXDAKKVFDVMAEQNVISYNAMIEGYSSQEKLSEALELFHEMR 332

Query: 178 RFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELS 237
                 +  +F  +L +   L  L+L++Q+HG ++  G   ++   S+++D Y+KC  + 
Sbjct: 333 VRLFPPSLLTFVSLLGVSASLFALELSKQIHGLIIKXGVSLDLFAGSALIDVYSKCSYVK 392

Query: 238 DARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGL 297
           DAR +                               F EM EK+ V W  +  GYT++  
Sbjct: 393 DARHV-------------------------------FEEMNEKDIVVWNAMFFGYTQHLE 421

Query: 298 GQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSS 357
            ++AL+L++ +   R +PN+ TF++ + A +++ SL+HG+Q H  L++        V ++
Sbjct: 422 NEEALKLYSTLQFSRQKPNEFTFAALITAASNLASLRHGQQFHNQLVKMGLDFCPFVTNA 481

Query: 358 LIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKP 417
           L+DMY+KCG + + R++F+ +    + + WN+MIS   QHG  E+A+ +F +M++  ++P
Sbjct: 482 LVDMYAKCGSIEEARKMFN-SSIWRDVVCWNSMISTHAQHGEAEEALGMFREMMKEGIQP 540

Query: 418 DKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQ 477
           + +T   +L+AC+H+G V++GL +F SM    GI P  EH+AC++ LL ++G   +    
Sbjct: 541 NYVTFVAVLSACSHAGXVEDGLNHFNSMP-GFGIKPGTEHYACVVSLLGRSGKLFEAKEF 599

Query: 478 LEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKG 537
           +EKMP E  + +W +L   CRI GN+++G+   +  I  +P+ S ++ LLS+I+++ G  
Sbjct: 600 IEKMPIEPAAIVWRSLLSACRIAGNVELGKYAAEMAISTDPKDSGSYILLSNIFASKGMW 659

Query: 538 RLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQL 590
             V+KVR  ++  +  KE   SWIE+ NKV+ F    + H   D++ SVL+ L
Sbjct: 660 ADVKKVRDRMDSSEVVKEPGRSWIEVNNKVNVFIARXTTHREADMIGSVLDIL 712



 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 104/386 (26%), Positives = 188/386 (48%), Gaps = 38/386 (9%)

Query: 108 RKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVE 167
           R  FD+    +++   +++  Y+  G ++ AR +FD + E+  V+W T+I GY K G   
Sbjct: 65  RSGFDQ----DVYVGTSLIDFYSKNGBIEVARLVFDQLLEKTAVTWTTIIAGYTKCGRSX 120

Query: 168 EGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIV 227
             L+ +  +R  ++  + +  + +L+ C  LE L+  +Q+H  VL  G   +V + + ++
Sbjct: 121 VSLELFAQMRETNVVPDRYVVSSVLSACSMLEFLEGGKQIHAYVLRRGTEMDVSVVNVLI 180

Query: 228 DAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTT 287
           D Y KC  +   R+LFD+   +++++WTTM+SGY                  +N   W  
Sbjct: 181 DFYTKCNRVKAGRKLFDQMVVKNIISWTTMISGYM-----------------QNSFDW-- 221

Query: 288 LIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTN 347
                       +A++LF  M  L  +P+    +S L +C S+ +L+ G+QVH + I+ N
Sbjct: 222 ------------EAMKLFGEMNRLGWKPDGFACTSVLTSCGSLEALEQGRQVHAYTIKAN 269

Query: 348 FRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLF 407
             SN  V + LIDMY+K   L D ++VFD+   ++N + +N MI   +      +A+ LF
Sbjct: 270 LESNEFVKNGLIDMYAKSNLLXDAKKVFDVM-AEQNVISYNAMIEGYSSQEKLSEALELF 328

Query: 408 HDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQ 467
           H+M R  + P  +   V L   + S    E       +    G+  +    + LI++ ++
Sbjct: 329 HEM-RVRLFPPSLLTFVSLLGVSASLFALELSKQIHGLIIKXGVSLDLFAGSALIDVYSK 387

Query: 468 AGCSDQLMNQLEKMPYEHDSYLWNAL 493
                   +  E+M  E D  +WNA+
Sbjct: 388 CSYVKDARHVFEEMN-EKDIVVWNAM 412



 Score =  150 bits (378), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 88/276 (31%), Positives = 145/276 (52%), Gaps = 33/276 (11%)

Query: 164 GAVEEGLKFYKVLRRFSIS-CNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVI 222
           G  EE L  +  L+R S    NEF  A ++  C +L  ++   Q+HG V+ +GF  +V +
Sbjct: 15  GYSEEALMVFVDLQRKSGEHPNEFVLASVIRACTQLGVVEKGAQLHGFVVRSGFDQDVYV 74

Query: 223 SSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNP 282
            +S++D Y                               +K GB+E A  +F+++ EK  
Sbjct: 75  GTSLIDFY-------------------------------SKNGBIEVARLVFDQLLEKTA 103

Query: 283 VSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGF 342
           V+WTT+IAGYT+ G    +LELF +M    + P+++  SS L AC+ +  L+ GKQ+H +
Sbjct: 104 VTWTTIIAGYTKCGRSXVSLELFAQMRETNVVPDRYVVSSVLSACSMLEFLEGGKQIHAY 163

Query: 343 LIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQ 402
           ++R     +  V++ LID Y+KC  +  GR++FD    K N + W TMIS   Q+ +D +
Sbjct: 164 VLRRGTEMDVSVVNVLIDFYTKCNRVKAGRKLFDQMVVK-NIISWTTMISGYMQNSFDWE 222

Query: 403 AIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEG 438
           A++LF +M R   KPD      +L +C     +++G
Sbjct: 223 AMKLFGEMNRLGWKPDGFACTSVLTSCGSLEALEQG 258


>gi|15226150|ref|NP_180924.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75101011|sp|P93005.1|PP181_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g33680
 gi|1707007|gb|AAC69139.1| hypothetical protein [Arabidopsis thaliana]
 gi|330253774|gb|AEC08868.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 727

 Score =  297 bits (761), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 178/574 (31%), Positives = 294/574 (51%), Gaps = 70/574 (12%)

Query: 29  SKGQLSEAISSLDLLAQRGIRLPAETLAF--ILQQCAESKSLKLGKRVHLHLKLTQRKTP 86
           ++G++ EAI   +L  +           F  +L   A +  + LG+++H    +T +   
Sbjct: 196 TRGRVEEAIKVFNLFLREKEEGSDSDYVFTAVLSSLAATIYVGLGRQIHC---ITIKNGL 252

Query: 87  TTF--LSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDN 144
             F  LSN L++MY KC S                               +  A  +FD+
Sbjct: 253 LGFVALSNALVTMYSKCES-------------------------------LNEACKMFDS 281

Query: 145 MAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLT 204
             +R+ ++W+ M+ GY+++G   E +K +  +    I  +E++  G+L  C  +  L+  
Sbjct: 282 SGDRNSITWSAMVTGYSQNGESLEAVKLFSRMFSAGIKPSEYTIVGVLNACSDICYLEEG 341

Query: 205 RQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKL 264
           +Q+H  +L  GF  ++  ++++VD YAK G L+DAR+ FD    RDV  WT+++SGY + 
Sbjct: 342 KQLHSFLLKLGFERHLFATTALVDMYAKAGCLADARKGFDCLQERDVALWTSLISGYVQN 401

Query: 265 GDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCL 324
            D E                               +AL L+ RM    I PN  T +S L
Sbjct: 402 SDNE-------------------------------EALILYRRMKTAGIIPNDPTMASVL 430

Query: 325 CACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENS 384
            AC+S+ +L+ GKQVHG  I+  F     + S+L  MYSKCG L DG  VF  T NK+  
Sbjct: 431 KACSSLATLELGKQVHGHTIKHGFGLEVPIGSALSTMYSKCGSLEDGNLVFRRTPNKD-V 489

Query: 385 MLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFES 444
           + WN MIS L+ +G  ++A+ LF +M+   ++PD +T   I++AC+H G V+ G  YF  
Sbjct: 490 VSWNAMISGLSHNGQGDEALELFEEMLAEGMEPDDVTFVNIISACSHKGFVERGWFYFNM 549

Query: 445 MTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNID 504
           M+  +G+ P  +H+AC+++LL++AG   +    +E    +H   LW  L   C+ HG  +
Sbjct: 550 MSDQIGLDPKVDHYACMVDLLSRAGQLKEAKEFIESANIDHGLCLWRILLSACKNHGKCE 609

Query: 505 MGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIE 564
           +G    ++L+    + S+T+  LS IY+ALG+ R VE+V + +      KE   SWIE++
Sbjct: 610 LGVYAGEKLMALGSRESSTYVQLSGIYTALGRMRDVERVWKHMRANGVSKEVGCSWIELK 669

Query: 565 NKVHAFSVSDSLHPMRDVLYSVLEQLAGQMGEDA 598
           N+ H F V D++HPM +    ++  ++ QM E+ 
Sbjct: 670 NQYHVFVVGDTMHPMIEETKDLVCLVSRQMIEEG 703



 Score =  174 bits (440), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 94/340 (27%), Positives = 179/340 (52%), Gaps = 36/340 (10%)

Query: 118 NLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLR 177
           +++   +++  Y   G+++    +F  M ER+  +W+TM+ GYA  G VEE +K + +  
Sbjct: 152 DIYVDTSLVGMYCKAGLVEDGLKVFAYMPERNTYTWSTMVSGYATRGRVEEAIKVFNLFL 211

Query: 178 RF--SISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGE 235
           R     S +++ F  +L+       + L RQ+H   +  G L  V +S+++V  Y+KC  
Sbjct: 212 REKEEGSDSDYVFTAVLSSLAATIYVGLGRQIHCITIKNGLLGFVALSNALVTMYSKCES 271

Query: 236 LSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRN 295
           L++A                                K+F+   ++N ++W+ ++ GY++N
Sbjct: 272 LNEA-------------------------------CKMFDSSGDRNSITWSAMVTGYSQN 300

Query: 296 GLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVM 355
           G   +A++LF+RM    I+P+++T    L AC+ I  L+ GKQ+H FL++  F  +    
Sbjct: 301 GESLEAVKLFSRMFSAGIKPSEYTIVGVLNACSDICYLEEGKQLHSFLLKLGFERHLFAT 360

Query: 356 SSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSV 415
           ++L+DMY+K GCL D R+ FD    ++ + LW ++IS   Q+  +E+A+ L+  M  + +
Sbjct: 361 TALVDMYAKAGCLADARKGFDCLQERDVA-LWTSLISGYVQNSDNEEALILYRRMKTAGI 419

Query: 416 KPDKITLAVILNACTHSGLVQEG-LTYFESMTHDLGI-IP 453
            P+  T+A +L AC+    ++ G   +  ++ H  G+ +P
Sbjct: 420 IPNDPTMASVLKACSSLATLELGKQVHGHTIKHGFGLEVP 459



 Score =  165 bits (418), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 102/375 (27%), Positives = 186/375 (49%), Gaps = 37/375 (9%)

Query: 123 NNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEG---LKFYKVLRRF 179
           N +++ YA  G +  A ++F+ +  +DVVSWN++I GY+++G +      ++ ++ +R  
Sbjct: 53  NVLVNFYAKCGKLAKAHSIFNAIICKDVVSWNSLITGYSQNGGISSSYTVMQLFREMRAQ 112

Query: 180 SISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDA 239
            I  N ++ AGI      L+   + RQ H  V+      ++ + +S+V  Y K G + D 
Sbjct: 113 DILPNAYTLAGIFKAESSLQSSTVGRQAHALVVKMSSFGDIYVDTSLVGMYCKAGLVEDG 172

Query: 240 RRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFN-EMPEKNPVSWTTLIAGYTRNGLG 298
            ++F     R+  TW+TMVSGYA  G +E A K+FN  + EK   S              
Sbjct: 173 LKVFAYMPERNTYTWSTMVSGYATRGRVEEAIKVFNLFLREKEEGS-------------- 218

Query: 299 QKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSL 358
                            + + F++ L + A+ + +  G+Q+H   I+        + ++L
Sbjct: 219 ----------------DSDYVFTAVLSSLAATIYVGLGRQIHCITIKNGLLGFVALSNAL 262

Query: 359 IDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPD 418
           + MYSKC  LN+  ++FD + ++ NS+ W+ M++  +Q+G   +A++LF  M  + +KP 
Sbjct: 263 VTMYSKCESLNEACKMFDSSGDR-NSITWSAMVTGYSQNGESLEAVKLFSRMFSAGIKPS 321

Query: 419 KITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQL 478
           + T+  +LNAC+    ++EG     S    LG   +      L+++ A+AGC        
Sbjct: 322 EYTIVGVLNACSDICYLEEG-KQLHSFLLKLGFERHLFATTALVDMYAKAGCLADARKGF 380

Query: 479 EKMPYEHDSYLWNAL 493
           + +  E D  LW +L
Sbjct: 381 DCLQ-ERDVALWTSL 394



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 51/223 (22%), Positives = 98/223 (43%), Gaps = 16/223 (7%)

Query: 332 SLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMI 391
           +L  G+ VHG +IRT   +     + L++ Y+KCG L     +F+    K+  + WN++I
Sbjct: 29  NLVAGRAVHGQIIRTGASTCIQHANVLVNFYAKCGKLAKAHSIFNAIICKD-VVSWNSLI 87

Query: 392 SALTQHG---YDEQAIRLFHDMVRSSVKPDKITLAVILNA-----CTHSGLVQEGLTYFE 443
           +  +Q+G        ++LF +M    + P+  TLA I  A      +  G     L    
Sbjct: 88  TGYSQNGGISSSYTVMQLFREMRAQDILPNAYTLAGIFKAESSLQSSTVGRQAHALVVKM 147

Query: 444 SMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNI 503
           S   D+ +         L+ +  +AG  +  +     MP E ++Y W+ +       G +
Sbjct: 148 SSFGDIYV------DTSLVGMYCKAGLVEDGLKVFAYMP-ERNTYTWSTMVSGYATRGRV 200

Query: 504 DMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQL 546
           +   KV +  + +  + S +  + +++ S+L     V   RQ+
Sbjct: 201 EEAIKVFNLFLREKEEGSDSDYVFTAVLSSLAATIYVGLGRQI 243


>gi|298204516|emb|CBI23791.3| unnamed protein product [Vitis vinifera]
          Length = 615

 Score =  297 bits (760), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 150/424 (35%), Positives = 235/424 (55%), Gaps = 3/424 (0%)

Query: 170 LKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDA 229
           L+ Y  +    +  + F+   +L  C  L  + + R VHGQ L  G   +  + +S++D 
Sbjct: 92  LEAYARMHFLGLLGDNFTLPFVLKSCADLSRVCMGRCVHGQGLRVGLEGDFYVGASLIDM 151

Query: 230 YAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLI 289
           Y KCG + DAR+LFD+   RD+ +W  +++GY K G++  A  LF  M  +N VSWT +I
Sbjct: 152 YVKCGVIGDARKLFDKMIVRDMASWNALIAGYMKEGEIGVAEDLFERMEHRNIVSWTAMI 211

Query: 290 AGYTRNGLGQKALELFTRMMI--LRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTN 347
           +GYT+NG  ++AL LF  M+     ++PN  T  S L ACA   +L+ G+++H F     
Sbjct: 212 SGYTQNGFAEQALGLFDEMLQDGSEMKPNWVTIVSVLPACAQSAALERGRRIHDFANGIG 271

Query: 348 FRSNTIVMSSLIDMYSKCGCLNDGRQVFDL-TDNKENSMLWNTMISALTQHGYDEQAIRL 406
              N+ V ++L  MY+KC  L + R  FD+   N +N + WNTMI+A   HG   +A+ +
Sbjct: 272 LHLNSSVQTALAGMYAKCYSLVEARCCFDMIAQNGKNLIAWNTMITAYASHGCGVEAVSI 331

Query: 407 FHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLA 466
           F +M+R+ V+PD +T   +L+ C+HSGL+  GL +F  M     + P  EH+AC+++LL 
Sbjct: 332 FENMLRAGVQPDAVTFMGLLSGCSHSGLIDAGLNHFNDMGTIHSVEPRVEHYACVVDLLG 391

Query: 467 QAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGL 526
           +AG   +    + +MP +    +W AL   CR H N+++      +L    P +S  + L
Sbjct: 392 RAGRLVEAKELISQMPMQAGPSVWGALLAACRSHRNLEIAELAARRLFVLEPDNSGNYVL 451

Query: 527 LSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSV 586
           LS++Y+  G    V+K+R L+  +  KK    SWIEI  K H F  +D  HP    +Y  
Sbjct: 452 LSNLYAEAGMWEEVKKLRALLKYQGMKKSPGCSWIEINGKSHLFMGADKSHPQAKEIYKF 511

Query: 587 LEQL 590
           LE L
Sbjct: 512 LEAL 515



 Score =  132 bits (331), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 81/263 (30%), Positives = 138/263 (52%), Gaps = 9/263 (3%)

Query: 54  TLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDK 113
           TL F+L+ CA+   + +G+ VH    L        ++   LI MY KCG   DARK+FDK
Sbjct: 109 TLPFVLKSCADLSRVCMGRCVHGQ-GLRVGLEGDFYVGASLIDMYVKCGVIGDARKLFDK 167

Query: 114 IPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFY 173
           + V+++ S+N +++GY   G +  A +LF+ M  R++VSW  MI GY ++G  E+ L  +
Sbjct: 168 MIVRDMASWNALIAGYMKEGEIGVAEDLFERMEHRNIVSWTAMISGYTQNGFAEQALGLF 227

Query: 174 -KVLRRFS-ISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYA 231
            ++L+  S +  N  +   +L  C +   L+  R++H      G   N  + +++   YA
Sbjct: 228 DEMLQDGSEMKPNWVTIVSVLPACAQSAALERGRRIHDFANGIGLHLNSSVQTALAGMYA 287

Query: 232 KCGELSDARRLFD--ETDARDVLTWTTMVSGYAKLGDMESASKLFNEM----PEKNPVSW 285
           KC  L +AR  FD    + ++++ W TM++ YA  G    A  +F  M     + + V++
Sbjct: 288 KCYSLVEARCCFDMIAQNGKNLIAWNTMITAYASHGCGVEAVSIFENMLRAGVQPDAVTF 347

Query: 286 TTLIAGYTRNGLGQKALELFTRM 308
             L++G + +GL    L  F  M
Sbjct: 348 MGLLSGCSHSGLIDAGLNHFNDM 370


>gi|356538057|ref|XP_003537521.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14050,
           mitochondrial-like [Glycine max]
          Length = 611

 Score =  297 bits (760), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 157/475 (33%), Positives = 261/475 (54%), Gaps = 4/475 (0%)

Query: 123 NNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSIS 182
           N +L+ Y   G+++ A  LFD +  RD V+W +++     S      L   + L      
Sbjct: 42  NTLLNAYGKCGLIQDALQLFDALPRRDPVAWASLLTACNLSNRPHRALSISRSLLSTGFH 101

Query: 183 CNEFSFAGILTICVKLEEL--KLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDAR 240
            + F FA ++  C  L  L  K  +QVH +  ++ F  + V+ SS++D YAK G     R
Sbjct: 102 PDHFVFASLVKACANLGVLHVKQGKQVHARFFLSPFSDDDVVKSSLIDMYAKFGLPDYGR 161

Query: 241 RLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQK 300
            +FD   + + ++WTTM+SGYA+ G    A +LF + P +N  +WT LI+G  ++G G  
Sbjct: 162 AVFDSISSLNSISWTTMISGYARSGRKFEAFRLFRQTPYRNLFAWTALISGLVQSGNGVD 221

Query: 301 ALELFTRMMILRIR-PNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLI 359
           A  LF  M    I   +    SS + ACA++   + GKQ+HG +I   + S   + ++LI
Sbjct: 222 AFHLFVEMRHEGISVTDPLVLSSVVGACANLALWELGKQMHGVVITLGYESCLFISNALI 281

Query: 360 DMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDK 419
           DMY+KC  L   + +F     +++ + W ++I    QHG  E+A+ L+ +MV + VKP++
Sbjct: 282 DMYAKCSDLVAAKYIF-CEMCRKDVVSWTSIIVGTAQHGQAEEALALYDEMVLAGVKPNE 340

Query: 420 ITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLE 479
           +T   +++AC+H+GLV +G T F +M  D GI P+ +H+ CL++L +++G  D+  N + 
Sbjct: 341 VTFVGLIHACSHAGLVSKGRTLFRTMVEDHGISPSLQHYTCLLDLFSRSGHLDEAENLIR 400

Query: 480 KMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRL 539
            MP   D   W AL   C+ HGN  M  ++ D L++  P+  +++ LLS+IY+  G    
Sbjct: 401 TMPVNPDEPTWAALLSSCKRHGNTQMAVRIADHLLNLKPEDPSSYILLSNIYAGAGMWED 460

Query: 540 VEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQM 594
           V KVR+L+   + KK    S I++    H F   ++ HPMRD +  ++ +L  +M
Sbjct: 461 VSKVRKLMMTLEAKKAPGYSCIDLGKGSHVFYAGETSHPMRDEIIGLMRELDEEM 515



 Score =  139 bits (350), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 98/378 (25%), Positives = 180/378 (47%), Gaps = 38/378 (10%)

Query: 54  TLAFILQQCAESKSL--KLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVF 111
             A +++ CA    L  K GK+VH    L+         S+ LI MY K G     R VF
Sbjct: 106 VFASLVKACANLGVLHVKQGKQVHARFFLSPFSDDDVVKSS-LIDMYAKFGLPDYGRAVF 164

Query: 112 DKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLK 171
           D I   N  S+  M+SGYA  G    A  LF     R++ +W  +I G  +SG   +   
Sbjct: 165 DSISSLNSISWTTMISGYARSGRKFEAFRLFRQTPYRNLFAWTALISGLVQSGNGVDAFH 224

Query: 172 FYKVLRRFSISCNE-FSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAY 230
            +  +R   IS  +    + ++  C  L   +L +Q+HG V+  G+ S + IS++++D Y
Sbjct: 225 LFVEMRHEGISVTDPLVLSSVVGACANLALWELGKQMHGVVITLGYESCLFISNALIDMY 284

Query: 231 AKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIA 290
           AKC +L  A+ +F E   +DV++WT+++ G A+ G  E A  L++EM          ++A
Sbjct: 285 AKCSDLVAAKYIFCEMCRKDVVSWTSIIVGTAQHGQAEEALALYDEM----------VLA 334

Query: 291 GYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRS 350
           G                     ++PN+ TF   + AC+    +  G+ +   ++  +  S
Sbjct: 335 G---------------------VKPNEVTFVGLIHACSHAGLVSKGRTLFRTMVEDHGIS 373

Query: 351 NTIV-MSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHD 409
            ++   + L+D++S+ G L++   +        +   W  ++S+  +HG  + A+R+   
Sbjct: 374 PSLQHYTCLLDLFSRSGHLDEAENLIRTMPVNPDEPTWAALLSSCKRHGNTQMAVRIADH 433

Query: 410 MVRSSVKPDKITLAVILN 427
           ++  ++KP+  +  ++L+
Sbjct: 434 LL--NLKPEDPSSYILLS 449



 Score =  105 bits (263), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 69/248 (27%), Positives = 114/248 (45%), Gaps = 38/248 (15%)

Query: 203 LTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYA 262
           L +++H Q++  G   +  I +++++AY KCG + DA +LFD    RD            
Sbjct: 21  LAKKLHAQIIKAGLNQHEPIPNTLLNAYGKCGLIQDALQLFDALPRRD------------ 68

Query: 263 KLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSS 322
                              PV+W +L+     +    +AL +   ++     P+   F+S
Sbjct: 69  -------------------PVAWASLLTACNLSNRPHRALSISRSLLSTGFHPDHFVFAS 109

Query: 323 CLCACAS--IVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDN 380
            + ACA+  ++ +K GKQVH     + F  + +V SSLIDMY+K G  + GR VFD + +
Sbjct: 110 LVKACANLGVLHVKQGKQVHARFFLSPFSDDDVVKSSLIDMYAKFGLPDYGRAVFD-SIS 168

Query: 381 KENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLT 440
             NS+ W TMIS   + G   +A RLF    R +   +      +++    SG   +   
Sbjct: 169 SLNSISWTTMISGYARSGRKFEAFRLF----RQTPYRNLFAWTALISGLVQSGNGVDAFH 224

Query: 441 YFESMTHD 448
            F  M H+
Sbjct: 225 LFVEMRHE 232



 Score = 72.8 bits (177), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 70/272 (25%), Positives = 115/272 (42%), Gaps = 49/272 (18%)

Query: 54  TLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDK 113
            L+ ++  CA     +LGK++H  + +T       F+SN LI MY KC SD+ A      
Sbjct: 241 VLSSVVGACANLALWELGKQMH-GVVITLGYESCLFISNALIDMYAKC-SDLVA------ 292

Query: 114 IPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFY 173
                                   A+ +F  M  +DVVSW ++I+G A+ G  EE L  Y
Sbjct: 293 ------------------------AKYIFCEMCRKDVVSWTSIIVGTAQHGQAEEALALY 328

Query: 174 KVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSS------IV 227
             +    +  NE +F G++  C       L  +  G+ L    + +  IS S      ++
Sbjct: 329 DEMVLAGVKPNEVTFVGLIHAC---SHAGLVSK--GRTLFRTMVEDHGISPSLQHYTCLL 383

Query: 228 DAYAKCGELSDARRLFDETDAR-DVLTWTTMVSGYAKLGDMESASK----LFNEMPEKNP 282
           D +++ G L +A  L        D  TW  ++S   + G+ + A +    L N  PE +P
Sbjct: 384 DLFSRSGHLDEAENLIRTMPVNPDEPTWAALLSSCKRHGNTQMAVRIADHLLNLKPE-DP 442

Query: 283 VSWTTLIAGYTRNGLGQKALELFTRMMILRIR 314
            S+  L   Y   G+ +   ++   MM L  +
Sbjct: 443 SSYILLSNIYAGAGMWEDVSKVRKLMMTLEAK 474


>gi|356536721|ref|XP_003536884.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g62890-like [Glycine max]
          Length = 1116

 Score =  297 bits (760), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 149/449 (33%), Positives = 256/449 (57%), Gaps = 10/449 (2%)

Query: 153 WNTMIIGYAKS----GAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVH 208
           WN +I    +S     A    L  Y  +R  ++  +  +F  +L     +      RQ+H
Sbjct: 27  WNNLIRASTRSRVQNPAFPPALSLYLRMRLHAVLPDLHTFPFLLQ---SINTPHRGRQLH 83

Query: 209 GQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDME 268
            Q+L+ G  ++  + +S+++ Y+ CG  + AR+ FDE    D+ +W  ++   AK G + 
Sbjct: 84  AQILLLGLANDPFVQTSLINMYSSCGTPTFARQAFDEITQPDLPSWNAIIHANAKAGMIH 143

Query: 269 SASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMIL---RIRPNQHTFSSCLC 325
            A KLF++MPEKN +SW+ +I GY   G  + AL LF  +  L   ++RPN+ T SS L 
Sbjct: 144 IARKLFDQMPEKNVISWSCMIHGYVSCGEYKAALSLFRSLQTLEGSQLRPNEFTMSSVLS 203

Query: 326 ACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSM 385
           ACA + +L+HGK VH ++ +T  + + ++ +SLIDMY+KCG +   + +FD    +++ M
Sbjct: 204 ACARLGALQHGKWVHAYIDKTGMKIDVVLGTSLIDMYAKCGSIERAKCIFDNLGPEKDVM 263

Query: 386 LWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESM 445
            W+ MI+A + HG  E+ + LF  MV   V+P+ +T   +L AC H GLV EG  YF+ M
Sbjct: 264 AWSAMITAFSMHGLSEECLELFARMVNDGVRPNAVTFVAVLCACVHGGLVSEGNEYFKRM 323

Query: 446 THDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDM 505
            ++ G+ P  +H+ C+++L ++AG  +   N ++ MP E D  +W AL    RIHG+++ 
Sbjct: 324 MNEYGVSPMIQHYGCMVDLYSRAGRIEDAWNVVKSMPMEPDVMIWGALLNGARIHGDVET 383

Query: 506 GRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIEN 565
               + +L++ +P +S+ + LLS++Y+ LG+ R V  +R L+  R  KK    S +E++ 
Sbjct: 384 CEIAITKLLELDPANSSAYVLLSNVYAKLGRWREVRHLRDLMEVRGIKKLPGCSLVEVDG 443

Query: 566 KVHAFSVSDSLHPMRDVLYSVLEQLAGQM 594
            +  F   D+ HP    LY +L+++  ++
Sbjct: 444 VIREFFAGDNSHPELLNLYVMLDEIMKRL 472



 Score =  160 bits (406), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 99/350 (28%), Positives = 167/350 (47%), Gaps = 40/350 (11%)

Query: 54  TLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDK 113
           T  F+LQ          G+++H  + L        F+   LI+MY  CG+   AR+ FD+
Sbjct: 65  TFPFLLQSINTPHR---GRQLHAQILLLGLAN-DPFVQTSLINMYSSCGTPTFARQAFDE 120

Query: 114 IPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFY 173
           I   +L S+N ++   A  GM+  AR LFD M E++V+SW+ MI GY   G  +  L  +
Sbjct: 121 ITQPDLPSWNAIIHANAKAGMIHIARKLFDQMPEKNVISWSCMIHGYVSCGEYKAALSLF 180

Query: 174 KVLRRFS---ISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAY 230
           + L+      +  NEF+ + +L+ C +L  L+  + VH  +  TG   +VV+ +S++D Y
Sbjct: 181 RSLQTLEGSQLRPNEFTMSSVLSACARLGALQHGKWVHAYIDKTGMKIDVVLGTSLIDMY 240

Query: 231 AKCGELSDARRLFDETDA-RDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLI 289
           AKCG +  A+ +FD     +DV+ W+ M++                              
Sbjct: 241 AKCGSIERAKCIFDNLGPEKDVMAWSAMIT------------------------------ 270

Query: 290 AGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFR 349
             ++ +GL ++ LELF RM+   +RPN  TF + LCAC     +  G +    ++     
Sbjct: 271 -AFSMHGLSEECLELFARMVNDGVRPNAVTFVAVLCACVHGGLVSEGNEYFKRMMNEYGV 329

Query: 350 SNTIV-MSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHG 398
           S  I     ++D+YS+ G + D   V      + + M+W  +++    HG
Sbjct: 330 SPMIQHYGCMVDLYSRAGRIEDAWNVVKSMPMEPDVMIWGALLNGARIHG 379


>gi|224061246|ref|XP_002300388.1| predicted protein [Populus trichocarpa]
 gi|222847646|gb|EEE85193.1| predicted protein [Populus trichocarpa]
          Length = 514

 Score =  297 bits (760), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 144/420 (34%), Positives = 248/420 (59%), Gaps = 3/420 (0%)

Query: 176 LRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGE 235
           +R F +  + F+ + +L  C+KL ++   + +HG     GF SN+ + + I++ Y  CGE
Sbjct: 1   MRLFDVLPDTFTCSFVLKACLKLSDVVNGKTIHGLFQKLGFGSNLFLQNMILNLYGLCGE 60

Query: 236 LSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRN 295
           + DA  LF++   RD +TW  +++  AK GD++ A   F  MP KN  SWT++I+G+ + 
Sbjct: 61  MGDAMLLFEKMPQRDAVTWNIVIAQLAKRGDIDGAYGFFLRMPNKNVRSWTSMISGFVQC 120

Query: 296 GLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVM 355
           G   +A++LF ++    +RPN+ T  S L ACA +  L  G+ VH +  ++ F+ N  V 
Sbjct: 121 GKPNEAIDLFMKLEDEAVRPNEVTVVSVLAACADLGDLDLGRIVHEYSTKSGFKRNVHVC 180

Query: 356 SSLIDMYSKCGCLNDGRQVFDLTDNKENSML-WNTMISALTQHGYDEQAIRLFHDMVRSS 414
           ++LIDMY KCGCL + R+VF   + +E +++ W+ MI+ L  HG  E+A+ LF +M++  
Sbjct: 181 NTLIDMYVKCGCLENARRVF--YEMEERTVVSWSAMIAGLAMHGQAEEALCLFSEMIKLG 238

Query: 415 VKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQL 474
           VKP+ +T   +L+AC+H GL+ EG  +F SMT D G+IP  EH+ C+++L ++AG  ++ 
Sbjct: 239 VKPNGVTFIGLLHACSHMGLIDEGRRFFASMTADYGVIPQIEHYGCVVDLFSRAGLLEEA 298

Query: 475 MNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSAL 534
              +  MP + +  +W AL G C++H NID+  + +  L + +P +   + ++S+IY+  
Sbjct: 299 HEFILSMPIKPNGVVWGALLGGCKVHKNIDLAEEAIKHLSELDPLNDGYYVVISNIYAEA 358

Query: 535 GKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQM 594
            +     +VR+L+ +R  KK    S I +   VH F   D  HP  + +  + ++L  +M
Sbjct: 359 ERWEDAARVRKLMKDRGVKKTSGWSSITVNGVVHEFVAGDQTHPQAEDICKIWDKLLVKM 418



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 93/349 (26%), Positives = 161/349 (46%), Gaps = 41/349 (11%)

Query: 54  TLAFILQQCAESKSLKLGKRVH-LHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFD 112
           T +F+L+ C +   +  GK +H L  KL        FL N ++++Y  CG   DA  +F+
Sbjct: 12  TCSFVLKACLKLSDVVNGKTIHGLFQKLGF--GSNLFLQNMILNLYGLCGEMGDAMLLFE 69

Query: 113 KIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKF 172
           K+P ++  ++N +++  A  G +  A   F  M  ++V SW +MI G+ + G   E +  
Sbjct: 70  KMPQRDAVTWNIVIAQLAKRGDIDGAYGFFLRMPNKNVRSWTSMISGFVQCGKPNEAIDL 129

Query: 173 YKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAK 232
           +  L   ++  NE +   +L  C  L +L L R VH     +GF  NV + ++++D Y K
Sbjct: 130 FMKLEDEAVRPNEVTVVSVLAACADLGDLDLGRIVHEYSTKSGFKRNVHVCNTLIDMYVK 189

Query: 233 CGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGY 292
           CG L +ARR+F E + R V++W+ M++G A  G  E                        
Sbjct: 190 CGCLENARRVFYEMEERTVVSWSAMIAGLAMHGQAE------------------------ 225

Query: 293 TRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNT 352
                  +AL LF+ M+ L ++PN  TF   L AC+ +  +  G++   F          
Sbjct: 226 -------EALCLFSEMIKLGVKPNGVTFIGLLHACSHMGLIDEGRR---FFASMTADYGV 275

Query: 353 IVM----SSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQH 397
           I        ++D++S+ G L +  +       K N ++W  ++     H
Sbjct: 276 IPQIEHYGCVVDLFSRAGLLEEAHEFILSMPIKPNGVVWGALLGGCKVH 324



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 50/167 (29%), Positives = 82/167 (49%), Gaps = 10/167 (5%)

Query: 15  LPNNCLIQSFLSLISK----GQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKL 70
           +PN   ++S+ S+IS     G+ +EAI     L    +R    T+  +L  CA+   L L
Sbjct: 102 MPNKN-VRSWTSMISGFVQCGKPNEAIDLFMKLEDEAVRPNEVTVVSVLAACADLGDLDL 160

Query: 71  GKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYA 130
           G+ VH +   +  K     + N LI MY KCG   +AR+VF ++  + + S++ M++G A
Sbjct: 161 GRIVHEYSTKSGFKR-NVHVCNTLIDMYVKCGCLENARRVFYEMEERTVVSWSAMIAGLA 219

Query: 131 NLGMMKHARNLFDNMAERDVVSWNTMIIGYAKS----GAVEEGLKFY 173
             G  + A  LF  M +  V       IG   +    G ++EG +F+
Sbjct: 220 MHGQAEEALCLFSEMIKLGVKPNGVTFIGLLHACSHMGLIDEGRRFF 266


>gi|242038427|ref|XP_002466608.1| hypothetical protein SORBIDRAFT_01g010975 [Sorghum bicolor]
 gi|241920462|gb|EER93606.1| hypothetical protein SORBIDRAFT_01g010975 [Sorghum bicolor]
          Length = 752

 Score =  297 bits (760), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 159/468 (33%), Positives = 273/468 (58%), Gaps = 10/468 (2%)

Query: 92  NHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVV 151
           N LI++Y + G    A +VFD + V+++ S+  +L  YA LG ++ AR + D M ER+ V
Sbjct: 291 NSLITLYLRMGDAAAAHRVFDDMEVRDVVSWTALLDVYAELGDLEGARRVLDAMPERNEV 350

Query: 152 SWNTMIIGYAKSGAVEEGLKFYKVLR----RFSISCNEFSFAGILTICVKLEELKLTRQV 207
           SW+T+I  + + G   E LK Y  +     R +ISC    F+ +L+ C  L +L+   ++
Sbjct: 351 SWSTLIARHEQKGDSAEALKLYSQMLAEGCRPNISC----FSSVLSACATLHDLRGGTRI 406

Query: 208 HGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDM 267
           H   L  GF S++ +SSS++D Y KC + +DA+R+F+    ++ + W +++SGY+  G M
Sbjct: 407 HANALKMGFSSSLFVSSSLIDMYCKCKQCTDAQRIFNSLPEKNTVCWNSLISGYSWNGKM 466

Query: 268 ESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCAC 327
             A +LF +MP +N  SW T+I+GY  N     AL  F  M+     P + T SS L AC
Sbjct: 467 VEAEELFKKMPARNAASWNTMISGYAENRRFGDALNYFCAMLASGQIPGEITLSSVLLAC 526

Query: 328 ASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLW 387
           A++ SL+ GK VH  +++     N  + ++L DMY+K G L+  R++F     K N++ W
Sbjct: 527 ANLCSLEMGKMVHAEIVKLGIEDNIFMGTALSDMYAKSGDLDSSRRMFYQMPEK-NNITW 585

Query: 388 NTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTH 447
             M+  L ++G+ E++I LF +M+ + + P++ T   IL AC+H GLV++ + YFE+M  
Sbjct: 586 TAMVQGLAENGFAEESILLFENMIANRIAPNEHTFLAILFACSHCGLVEQAIHYFETMQA 645

Query: 448 DLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGR 507
             GI P  +H+ C++++LA+AG   +    L K+P + D+  W++L   C  + N ++G 
Sbjct: 646 H-GIPPKDKHYTCMVDVLARAGRLPEAEELLMKVPSKLDTSSWSSLLSACNTYRNKEIGE 704

Query: 508 KVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKE 555
           +   +L +    ++A + LLS++Y++ GK +   + R L+   + KK+
Sbjct: 705 RAAKKLHELEKDNTAGYVLLSNMYASCGKWKDAAETRILMQGPRLKKD 752



 Score =  192 bits (489), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 128/442 (28%), Positives = 219/442 (49%), Gaps = 41/442 (9%)

Query: 87  TTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMA 146
           ++F  + ++S + K G    AR++FD +P K++ SY  M+      G +K A  L++   
Sbjct: 153 SSFTYDFMVSEHVKAGDIASARRLFDGMPEKSVVSYTTMVDALMKRGSVKDAVKLYERCP 212

Query: 147 ERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQ 206
              V  +  MI G+ ++   ++    ++ + R S+  N  +   ++  CV   E  L   
Sbjct: 213 LYSVAFFTAMIAGFVRNELHKDAFPVFRKMLRCSVRPNVVTLICVIKACVGAGEFDLAMG 272

Query: 207 VHGQVLVTG-FLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLG 265
           V G  +    F  ++ + +S++  Y + G+ + A R+FD+ + RDV++WT ++  YA+LG
Sbjct: 273 VVGLAIKWNLFEKSIEVHNSLITLYLRMGDAAAAHRVFDDMEVRDVVSWTALLDVYAELG 332

Query: 266 DMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLC 325
           D+E A ++ + MPE+N VSW+TLIA + + G   +AL+L+++M+    RPN   FSS L 
Sbjct: 333 DLEGARRVLDAMPERNEVSWSTLIARHEQKGDSAEALKLYSQMLAEGCRPNISCFSSVLS 392

Query: 326 ACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNK---- 381
           ACA++  L+ G ++H   ++  F S+  V SSLIDMY KC    D +++F+    K    
Sbjct: 393 ACATLHDLRGGTRIHANALKMGFSSSLFVSSSLIDMYCKCKQCTDAQRIFNSLPEKNTVC 452

Query: 382 --------------------------ENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSV 415
                                      N+  WNTMIS   ++     A+  F  M+ S  
Sbjct: 453 WNSLISGYSWNGKMVEAEELFKKMPARNAASWNTMISGYAENRRFGDALNYFCAMLASGQ 512

Query: 416 KPDKITLAVILNACTHSGLVQEGLTYFESMTH----DLGIIPNQEHHACLIELLAQAGCS 471
            P +ITL+ +L AC +   ++ G      M H     LGI  N      L ++ A++G  
Sbjct: 513 IPGEITLSSVLLACANLCSLEMG-----KMVHAEIVKLGIEDNIFMGTALSDMYAKSGDL 567

Query: 472 DQLMNQLEKMPYEHDSYLWNAL 493
           D       +MP E ++  W A+
Sbjct: 568 DSSRRMFYQMP-EKNNITWTAM 588



 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 102/390 (26%), Positives = 185/390 (47%), Gaps = 47/390 (12%)

Query: 30  KGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTF 89
           KG  +EA+     +   G R      + +L  CA    L+ G R+H +  L    + + F
Sbjct: 362 KGDSAEALKLYSQMLAEGCRPNISCFSSVLSACATLHDLRGGTRIHAN-ALKMGFSSSLF 420

Query: 90  LSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERD 149
           +S+ LI MY KC    DA+++F+ +P KN   +N+++SGY+  G M  A  LF  M  R+
Sbjct: 421 VSSSLIDMYCKCKQCTDAQRIFNSLPEKNTVCWNSLISGYSWNGKMVEAEELFKKMPARN 480

Query: 150 VVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHG 209
             SWNTMI GYA++    + L ++  +        E + + +L  C  L  L++ + VH 
Sbjct: 481 AASWNTMISGYAENRRFGDALNYFCAMLASGQIPGEITLSSVLLACANLCSLEMGKMVHA 540

Query: 210 QVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMES 269
           +++  G   N+ + +++ D YAK G+L  +RR+F +   ++ +TWT MV G A+      
Sbjct: 541 EIVKLGIEDNIFMGTALSDMYAKSGDLDSSRRMFYQMPEKNNITWTAMVQGLAE------ 594

Query: 270 ASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACAS 329
                                    NG  ++++ LF  M+  RI PN+HTF + L AC+ 
Sbjct: 595 -------------------------NGFAEESILLFENMIANRIAPNEHTFLAILFACSH 629

Query: 330 IVSLKHG------KQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKEN 383
              ++         Q HG   +          + ++D+ ++ G L +  ++     +K +
Sbjct: 630 CGLVEQAIHYFETMQAHGIPPKDKH------YTCMVDVLARAGRLPEAEELLMKVPSKLD 683

Query: 384 SMLWNTMISALTQH---GYDEQAIRLFHDM 410
           +  W++++SA   +      E+A +  H++
Sbjct: 684 TSSWSSLLSACNTYRNKEIGERAAKKLHEL 713



 Score = 89.4 bits (220), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 74/296 (25%), Positives = 124/296 (41%), Gaps = 67/296 (22%)

Query: 201 LKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFD---ETDARDVLTWTTM 257
           L L   +H   L +G  ++  ++S+++ AYA     +D  R F      DA    T+  M
Sbjct: 101 LPLVLSLHAHTLRSGLAADRSVASNLLTAYAAFARAADRDRAFRDCVSADAASSFTYDFM 160

Query: 258 VSGYAKLGDMESASKLFNEMPEKNPVSWTT------------------------------ 287
           VS + K GD+ SA +LF+ MPEK+ VS+TT                              
Sbjct: 161 VSEHVKAGDIASARRLFDGMPEKSVVSYTTMVDALMKRGSVKDAVKLYERCPLYSVAFFT 220

Query: 288 -LIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRT 346
            +IAG+ RN L + A  +F +M+   +RPN  T    + AC           V G  I+ 
Sbjct: 221 AMIAGFVRNELHKDAFPVFRKMLRCSVRPNVVTLICVIKACVGAGEFDLAMGVVGLAIKW 280

Query: 347 NFRSNTIVM--------------------------------SSLIDMYSKCGCLNDGRQV 374
           N    +I +                                ++L+D+Y++ G L   R+V
Sbjct: 281 NLFEKSIEVHNSLITLYLRMGDAAAAHRVFDDMEVRDVVSWTALLDVYAELGDLEGARRV 340

Query: 375 FDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACT 430
            D    + N + W+T+I+   Q G   +A++L+  M+    +P+    + +L+AC 
Sbjct: 341 LDAMPER-NEVSWSTLIARHEQKGDSAEALKLYSQMLAEGCRPNISCFSSVLSACA 395


>gi|449435936|ref|XP_004135750.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21300-like [Cucumis sativus]
          Length = 762

 Score =  297 bits (760), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 174/563 (30%), Positives = 280/563 (49%), Gaps = 64/563 (11%)

Query: 28  ISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPT 87
           +  G + EA      +   GI+  + T A  L    E  SLK  K +H ++ +       
Sbjct: 236 VQNGLMGEAEHLFRGMISAGIKPDSITFASFLPCVNELLSLKHCKEIHGYI-IRHAVVLD 294

Query: 88  TFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAE 147
            FL + LI +YFKC  DV+                               A+ +    + 
Sbjct: 295 VFLKSALIDIYFKC-RDVEM------------------------------AQKILCQSSS 323

Query: 148 RDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQV 207
            D V   TMI GY  +G  +E L+ ++ L +  +     +F+ I      L  L L +++
Sbjct: 324 FDTVVCTTMISGYVLNGKNKEALEAFRWLVQERMKPTSVTFSSIFPAFAGLAALNLGKEL 383

Query: 208 HGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDM 267
           HG ++ T       + S+I+D YAKCG L                               
Sbjct: 384 HGSIIKTKLDEKCHVGSAILDMYAKCGRL------------------------------- 412

Query: 268 ESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCAC 327
           + A ++FN + EK+ + W ++I   ++NG   +A+ LF +M +   R +  + S  L AC
Sbjct: 413 DLACRVFNRITEKDAICWNSMITSCSQNGRPGEAINLFRQMGMEGTRYDCVSISGALSAC 472

Query: 328 ASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLW 387
           A++ +L +GK++HG +I+   RS+    SSLIDMY+KCG LN  R+VFD    + N + W
Sbjct: 473 ANLPALHYGKEIHGLMIKGPLRSDLYAESSLIDMYAKCGNLNFSRRVFDRMQER-NEVSW 531

Query: 388 NTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTH 447
           N++ISA   HG  ++ + LFH+M+R+ ++PD +T   I++AC H+G V EG+ Y+  MT 
Sbjct: 532 NSIISAYGNHGDLKECLALFHEMLRNGIQPDHVTFLGIISACGHAGQVDEGIRYYHLMTE 591

Query: 448 DLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGR 507
           + GI    EH+AC+ ++  +AG  D+    +  MP+  D+ +W  L G C IHGN+++  
Sbjct: 592 EYGIPARMEHYACVADMFGRAGRLDEAFETINSMPFPPDAGVWGTLLGACHIHGNVELAE 651

Query: 508 KVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKV 567
                L D +P +S  + LL+++ +  GK R V KVR ++ ER  +K    SWIE+ N  
Sbjct: 652 VASKHLFDLDPLNSGYYVLLANVQAGAGKWRKVLKVRSIMKERGVRKVPGYSWIEVNNAT 711

Query: 568 HAFSVSDSLHPMRDVLYSVLEQL 590
           H F  +D  HP+   +YSVL+ L
Sbjct: 712 HMFVAADGSHPLTAQIYSVLDSL 734



 Score =  165 bits (417), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 132/523 (25%), Positives = 235/523 (44%), Gaps = 79/523 (15%)

Query: 28  ISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPT 87
           +  G    AI     +    I+  + T A +L  CA    L LG ++H            
Sbjct: 135 VKNGDSGNAIKIFLEMRHSEIKPNSVTFACVLSVCASEAMLDLGTQLH------------ 182

Query: 88  TFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAE 147
                    +   CG ++D+       PV N      +L+ Y+    ++ AR LFD   +
Sbjct: 183 --------GIAVSCGLELDS-------PVAN-----TLLAMYSKCQCLQAARKLFDTSPQ 222

Query: 148 RDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQV 207
            D+VSWN +I GY ++G + E    ++ +    I  +  +FA  L    +L  LK  +++
Sbjct: 223 SDLVSWNGIISGYVQNGLMGEAEHLFRGMISAGIKPDSITFASFLPCVNELLSLKHCKEI 282

Query: 208 HGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDM 267
           HG ++    + +V + S+++D Y KC ++  A+++  ++ + D +  TTM+S        
Sbjct: 283 HGYIIRHAVVLDVFLKSALIDIYFKCRDVEMAQKILCQSSSFDTVVCTTMIS-------- 334

Query: 268 ESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCAC 327
                                  GY  NG  ++ALE F  ++  R++P   TFSS   A 
Sbjct: 335 -----------------------GYVLNGKNKEALEAFRWLVQERMKPTSVTFSSIFPAF 371

Query: 328 ASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLW 387
           A + +L  GK++HG +I+T       V S+++DMY+KCG L+   +VF+    K+ ++ W
Sbjct: 372 AGLAALNLGKELHGSIIKTKLDEKCHVGSAILDMYAKCGRLDLACRVFNRITEKD-AICW 430

Query: 388 NTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACT-----HSGLVQEGLTYF 442
           N+MI++ +Q+G   +AI LF  M     + D ++++  L+AC      H G    GL   
Sbjct: 431 NSMITSCSQNGRPGEAINLFRQMGMEGTRYDCVSISGALSACANLPALHYGKEIHGLMIK 490

Query: 443 ESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGN 502
             +  DL         + LI++ A+ G  +      ++M  E +   WN++      HG+
Sbjct: 491 GPLRSDL------YAESSLIDMYAKCGNLNFSRRVFDRMQ-ERNEVSWNSIISAYGNHGD 543

Query: 503 IDMGRKVVDQLIDQNPQSSATHGLLSSIYSALG-KGRLVEKVR 544
           +     +  +++    Q    H     I SA G  G++ E +R
Sbjct: 544 LKECLALFHEMLRNGIQPD--HVTFLGIISACGHAGQVDEGIR 584



 Score =  158 bits (400), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 120/489 (24%), Positives = 220/489 (44%), Gaps = 79/489 (16%)

Query: 18  NCLIQSFLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLH 77
           N +I+ F  +   GQ + A+     +   G+     T  ++++ C   KS+K+GK VH  
Sbjct: 27  NWMIRGFTMM---GQFNYALLFYLKMLGAGVSPDKYTFPYVVKACCGLKSVKMGKIVHET 83

Query: 78  LKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKH 137
           + L   K                                +++F  ++++  YA  G +  
Sbjct: 84  VNLMGLK--------------------------------EDVFVGSSLIKLYAENGHLSD 111

Query: 138 ARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVK 197
           A+ LFDN+ ++D V WN M+ GY K+G     +K +  +R   I  N  +FA +L++C  
Sbjct: 112 AQYLFDNIPQKDSVLWNVMLNGYVKNGDSGNAIKIFLEMRHSEIKPNSVTFACVLSVCAS 171

Query: 198 LEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTM 257
              L L  Q+HG  +  G   +  ++++++  Y+KC  L  AR+LFD +   D+++W  +
Sbjct: 172 EAMLDLGTQLHGIAVSCGLELDSPVANTLLAMYSKCQCLQAARKLFDTSPQSDLVSWNGI 231

Query: 258 VSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQ 317
           +SGY                                +NGL  +A  LF  M+   I+P+ 
Sbjct: 232 ISGY-------------------------------VQNGLMGEAEHLFRGMISAGIKPDS 260

Query: 318 HTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDL 377
            TF+S L     ++SLKH K++HG++IR     +  + S+LID+Y KC  +   +++   
Sbjct: 261 ITFASFLPCVNELLSLKHCKEIHGYIIRHAVVLDVFLKSALIDIYFKCRDVEMAQKIL-C 319

Query: 378 TDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQE 437
             +  ++++  TMIS    +G +++A+  F  +V+  +KP  +T + I  A      +  
Sbjct: 320 QSSSFDTVVCTTMISGYVLNGKNKEALEAFRWLVQERMKPTSVTFSSIFPAFAGLAALNL 379

Query: 438 GLTYFESMTHDLGIIPNQEHHAC-----LIELLAQAGCSDQLMNQLEKMPYEHDSYLWNA 492
           G     S      II  +    C     ++++ A+ G  D       ++  E D+  WN+
Sbjct: 380 GKELHGS------IIKTKLDEKCHVGSAILDMYAKCGRLDLACRVFNRIT-EKDAICWNS 432

Query: 493 LHGVCRIHG 501
           +   C  +G
Sbjct: 433 MITSCSQNG 441



 Score =  154 bits (390), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 89/298 (29%), Positives = 143/298 (47%), Gaps = 32/298 (10%)

Query: 129 YANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSF 188
           Y   G +K A+NLF  +      +WN MI G+   G     L FY  +    +S ++++F
Sbjct: 2   YVRTGSLKDAKNLFYTLQLGCTSAWNWMIRGFTMMGQFNYALLFYLKMLGAGVSPDKYTF 61

Query: 189 AGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDA 248
             ++  C  L+ +K+ + VH  V + G   +V + SS++  Y                  
Sbjct: 62  PYVVKACCGLKSVKMGKIVHETVNLMGLKEDVFVGSSLIKLY------------------ 103

Query: 249 RDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRM 308
                        A+ G +  A  LF+ +P+K+ V W  ++ GY +NG    A+++F  M
Sbjct: 104 -------------AENGHLSDAQYLFDNIPQKDSVLWNVMLNGYVKNGDSGNAIKIFLEM 150

Query: 309 MILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCL 368
               I+PN  TF+  L  CAS   L  G Q+HG  +      ++ V ++L+ MYSKC CL
Sbjct: 151 RHSEIKPNSVTFACVLSVCASEAMLDLGTQLHGIAVSCGLELDSPVANTLLAMYSKCQCL 210

Query: 369 NDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVIL 426
              R++FD T  + + + WN +IS   Q+G   +A  LF  M+ + +KPD IT A  L
Sbjct: 211 QAARKLFD-TSPQSDLVSWNGIISGYVQNGLMGEAEHLFRGMISAGIKPDSITFASFL 267



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 62/233 (26%), Positives = 114/233 (48%), Gaps = 3/233 (1%)

Query: 261 YAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTF 320
           Y + G ++ A  LF  +      +W  +I G+T  G    AL  + +M+   + P+++TF
Sbjct: 2   YVRTGSLKDAKNLFYTLQLGCTSAWNWMIRGFTMMGQFNYALLFYLKMLGAGVSPDKYTF 61

Query: 321 SSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDN 380
              + AC  + S+K GK VH  +     + +  V SSLI +Y++ G L+D + +FD    
Sbjct: 62  PYVVKACCGLKSVKMGKIVHETVNLMGLKEDVFVGSSLIKLYAENGHLSDAQYLFDNIPQ 121

Query: 381 KENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLT 440
           K+ S+LWN M++   ++G    AI++F +M  S +KP+ +T A +L+ C    ++  G T
Sbjct: 122 KD-SVLWNVMLNGYVKNGDSGNAIKIFLEMRHSEIKPNSVTFACVLSVCASEAMLDLG-T 179

Query: 441 YFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNAL 493
               +    G+  +      L+ + ++  C        +  P + D   WN +
Sbjct: 180 QLHGIAVSCGLELDSPVANTLLAMYSKCQCLQAARKLFDTSP-QSDLVSWNGI 231


>gi|225436683|ref|XP_002262885.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Vitis vinifera]
          Length = 866

 Score =  297 bits (760), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 162/541 (29%), Positives = 286/541 (52%), Gaps = 69/541 (12%)

Query: 119 LFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRR 178
           +F  N+M++ Y+   M+  A+ +FD+M  R+ VSWN+MI G+  +G   E  + +  +R 
Sbjct: 228 IFVGNSMVNMYSKSLMVSDAKAVFDSMENRNAVSWNSMIAGFVTNGLDLEAFELFYRMRL 287

Query: 179 FSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGF---------------------- 216
             +   +  FA ++ +C  ++E+   +Q+H QV+  G                       
Sbjct: 288 EGVKLTQTIFATVIKLCANIKEMSFAKQLHCQVIKNGSDFDLNIKTALMVAYSKCSEIDD 347

Query: 217 ----------LSNVVISSSIVDAYAKCGELSDARRLFDETDARDV----LTWTTMVSG-- 260
                     + NVV  ++I+  Y + G    A  LF +     V     T++T+++   
Sbjct: 348 AFKLFCMMHGVQNVVSWTAIISGYVQNGRTDRAMNLFCQMRREGVRPNHFTYSTILTANA 407

Query: 261 -----------------------------YAKLGDMESASKLFNEMPEKNPVSWTTLIAG 291
                                        Y+K+GD   A+K+F  + EK+ V+W+ +++G
Sbjct: 408 AVSPSQIHALVVKTNYENSPSVGTALSDSYSKIGDANEAAKIFELIDEKDIVAWSAMLSG 467

Query: 292 YTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACAS-IVSLKHGKQVHGFLIRTNFRS 350
           Y + G  + A+++F ++    + PN+ TFSS L ACA+   S++ GKQ H   I++ F +
Sbjct: 468 YAQMGDIEGAVKIFLQLAKEGVEPNEFTFSSVLNACAAPTASVEQGKQFHSCSIKSGFSN 527

Query: 351 NTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDM 410
              V S+L+ MY+K G +    +VF    +++  + WN+MIS   QHG  ++++++F +M
Sbjct: 528 ALCVSSALVTMYAKRGNIESANEVFKRQVDRD-LVSWNSMISGYAQHGCGKKSLKIFEEM 586

Query: 411 VRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGC 470
              +++ D IT   +++ACTH+GLV EG  YF+ M  D  I+P  EH++C+++L ++AG 
Sbjct: 587 RSKNLELDGITFIGVISACTHAGLVNEGQRYFDLMVKDYHIVPTMEHYSCMVDLYSRAGM 646

Query: 471 SDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSI 530
            ++ M+ + KMP+   + +W  L   CR+H N+ +G    ++LI   PQ SA + LLS+I
Sbjct: 647 LEKAMDLINKMPFPAGATIWRTLLAACRVHLNVQLGELAAEKLISLQPQDSAAYVLLSNI 706

Query: 531 YSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQL 590
           Y+  G  +   KVR+L++ ++ KKE   SWIE++NK  +F   D  HP  D +Y  LE+L
Sbjct: 707 YATAGNWQERAKVRKLMDMKKVKKEAGYSWIEVKNKTFSFMAGDLSHPQSDRIYLKLEEL 766

Query: 591 A 591
           +
Sbjct: 767 S 767



 Score =  145 bits (367), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 134/558 (24%), Positives = 243/558 (43%), Gaps = 111/558 (19%)

Query: 32  QLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLS 91
           Q  EA++    L + G      +L+ +L+ C       +GK+VH    +         + 
Sbjct: 72  QNKEALNLFLGLRRSGSPTDGSSLSCVLKVCGCLFDRIVGKQVHCQC-IKCGFVEDVSVG 130

Query: 92  NHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDV- 150
             L+ MY K  S  D  +VFD++ VKN+ S+ ++L+GY   G+ + A  LF  M    + 
Sbjct: 131 TSLVDMYMKTESVEDGERVFDEMRVKNVVSWTSLLAGYRQNGLNEQALKLFSQMQLEGIK 190

Query: 151 ---VSWNTMIIGYAKSGAVEEGLKFYKVL------------------------------- 176
               ++  ++ G A  GAVE+G++ + ++                               
Sbjct: 191 PNPFTFAAVLGGLAADGAVEKGVQVHTMVIKSGLDSTIFVGNSMVNMYSKSLMVSDAKAV 250

Query: 177 -----RRFSISCNEFSFAGILT-----------ICVKLEELKLT---------------- 204
                 R ++S N    AG +T             ++LE +KLT                
Sbjct: 251 FDSMENRNAVSWNSM-IAGFVTNGLDLEAFELFYRMRLEGVKLTQTIFATVIKLCANIKE 309

Query: 205 ----RQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDA-RDVLTWTTMVS 259
               +Q+H QV+  G   ++ I ++++ AY+KC E+ DA +LF      ++V++WT ++S
Sbjct: 310 MSFAKQLHCQVIKNGSDFDLNIKTALMVAYSKCSEIDDAFKLFCMMHGVQNVVSWTAIIS 369

Query: 260 GYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHT 319
           GY + G  + A  LF +M                R G                +RPN  T
Sbjct: 370 GYVQNGRTDRAMNLFCQM---------------RREG----------------VRPNHFT 398

Query: 320 FSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTD 379
           +S+ L A A++       Q+H  +++TN+ ++  V ++L D YSK G  N+  ++F+L D
Sbjct: 399 YSTILTANAAVSP----SQIHALVVKTNYENSPSVGTALSDSYSKIGDANEAAKIFELID 454

Query: 380 NKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGL 439
            K+  + W+ M+S   Q G  E A+++F  + +  V+P++ T + +LNAC       E  
Sbjct: 455 EKD-IVAWSAMLSGYAQMGDIEGAVKIFLQLAKEGVEPNEFTFSSVLNACAAPTASVEQG 513

Query: 440 TYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRI 499
             F S +   G        + L+ + A+ G + +  N++ K   + D   WN++      
Sbjct: 514 KQFHSCSIKSGFSNALCVSSALVTMYAKRG-NIESANEVFKRQVDRDLVSWNSMISGYAQ 572

Query: 500 HGNIDMGRKVVDQLIDQN 517
           HG      K+ +++  +N
Sbjct: 573 HGCGKKSLKIFEEMRSKN 590



 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 79/299 (26%), Positives = 150/299 (50%), Gaps = 40/299 (13%)

Query: 137 HARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICV 196
           H++ LFD   ++ +   N ++  ++++   +E L  +  LRR     +  S + +L +C 
Sbjct: 44  HSQQLFDETPQQGLSRNNHLLFEFSRNDQNKEALNLFLGLRRSGSPTDGSSLSCVLKVCG 103

Query: 197 KLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTT 256
            L +  + +QVH Q +  GF+ +V + +S+VD Y K   + D  R+FDE   ++V++WT+
Sbjct: 104 CLFDRIVGKQVHCQCIKCGFVEDVSVGTSLVDMYMKTESVEDGERVFDEMRVKNVVSWTS 163

Query: 257 MVSGYAKLGDMESASKLFNEMP----EKNPVSWTTLIAGYTRNGLGQKALELFTRMMILR 312
           +++GY + G  E A KLF++M     + NP ++  ++ G   +G                
Sbjct: 164 LLAGYRQNGLNEQALKLFSQMQLEGIKPNPFTFAAVLGGLAADG---------------- 207

Query: 313 IRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGR 372
                              +++ G QVH  +I++   S   V +S+++MYSK   ++D +
Sbjct: 208 -------------------AVEKGVQVHTMVIKSGLDSTIFVGNSMVNMYSKSLMVSDAK 248

Query: 373 QVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTH 431
            VFD  +N+ N++ WN+MI+    +G D +A  LF+ M    VK  +   A ++  C +
Sbjct: 249 AVFDSMENR-NAVSWNSMIAGFVTNGLDLEAFELFYRMRLEGVKLTQTIFATVIKLCAN 306


>gi|359490408|ref|XP_002267761.2| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
           mitochondrial-like [Vitis vinifera]
          Length = 650

 Score =  297 bits (760), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 163/538 (30%), Positives = 285/538 (52%), Gaps = 35/538 (6%)

Query: 35  EAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLH-LKLTQRKTPTTFLSNH 93
           EAI     +  +GI     TL F+ + CA    +  G+++H+H LKL        F+SN 
Sbjct: 99  EAIHMYTRMHHQGITGNNLTLIFLFKACARVSDIVSGRKIHVHALKLGFESY--LFVSNA 156

Query: 94  LISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSW 153
           LI MY  C                               G +  A+ +FD M +RD+VSW
Sbjct: 157 LIHMYAMC-------------------------------GQLGFAQKMFDGMLDRDLVSW 185

Query: 154 NTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLV 213
           NT+I GY++    +E L+ +  +   +I  +  +   I+  C  L + +    +   +  
Sbjct: 186 NTLICGYSQYNKYKEVLRLFDAMTAANIKADAVTMVKIILACSHLGDWEFADSMVKYIKE 245

Query: 214 TGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKL 273
                +V + ++++D Y +      A+ +FD    R++++W  +V G+AK+G++ +A KL
Sbjct: 246 NNLEIDVYLGNTLIDMYGRRSLAELAQGVFDRMRERNIVSWNALVMGHAKVGNLTAARKL 305

Query: 274 FNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSL 333
           F+ MP+++ +SWT++I GY++      A++LF  MM  +++P++ T +S L ACA +  L
Sbjct: 306 FDNMPKRDVISWTSMITGYSQASQFSDAVKLFQEMMAAKVKPDKVTVASVLSACAHLGKL 365

Query: 334 KHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISA 393
             G  VH ++ R   +++  V +SLIDMY KCG +    +VF    +K+ S+ W ++IS 
Sbjct: 366 DVGWAVHHYIRRHGVQADIYVGNSLIDMYCKCGMVEKALEVFHRMKDKD-SVSWTSVISG 424

Query: 394 LTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIP 453
           L  +G+   A+ LF  M+R  V+P   T   IL AC H+GLV +GL YFESM    G++P
Sbjct: 425 LAVNGFANSALDLFSQMLREGVQPTHGTFVGILLACAHAGLVNKGLEYFESMESVHGLVP 484

Query: 454 NQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQL 513
             +H+ C+++LL+++G  D+    ++KMP   D  +W  L   C++HGN+ +      +L
Sbjct: 485 AMKHYGCVVDLLSRSGNIDKAYEFIKKMPIVPDVVVWRILLSACKLHGNVVLAEIATKRL 544

Query: 514 IDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFS 571
           ++ +P  S  + LLS+ Y+ + +     K+R+L+ +   +K    S IE++  V  +S
Sbjct: 545 LELDPCDSGNYVLLSNTYAGVDRWDDAMKMRELMEDSDVQKPSGSSSIEVDGMVSNYS 602



 Score =  132 bits (331), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 100/414 (24%), Positives = 191/414 (46%), Gaps = 23/414 (5%)

Query: 138 ARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVK 197
           A  +F+ +    +V WN MI G ++S    E +  Y  +    I+ N  +   +   C +
Sbjct: 69  AHLVFNQIECPTLVVWNHMIRGLSQSDHPVEAIHMYTRMHHQGITGNNLTLIFLFKACAR 128

Query: 198 LEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTM 257
           + ++   R++H   L  GF S + +S++++  YA CG+L  A+++FD    RD+++W T+
Sbjct: 129 VSDIVSGRKIHVHALKLGFESYLFVSNALIHMYAMCGQLGFAQKMFDGMLDRDLVSWNTL 188

Query: 258 VSGYAKLGDMESASKLFNEMPEKN----PVSWTTLIAGYTRNGLGQKALELFTRMMILRI 313
           + GY++    +   +LF+ M   N     V+   +I   +  G  +     F   M+  I
Sbjct: 189 ICGYSQYNKYKEVLRLFDAMTAANIKADAVTMVKIILACSHLGDWE-----FADSMVKYI 243

Query: 314 RPNQHTFSSCLCACASIVSLKHGKQ-----VHGFLIRTNFRSNTIVMSSLIDMYSKCGCL 368
           + N       L    + +   +G++       G   R   R N +  ++L+  ++K G L
Sbjct: 244 KENNLEIDVYL---GNTLIDMYGRRSLAELAQGVFDRMRER-NIVSWNALVMGHAKVGNL 299

Query: 369 NDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNA 428
              R++FD    K + + W +MI+  +Q      A++LF +M+ + VKPDK+T+A +L+A
Sbjct: 300 TAARKLFD-NMPKRDVISWTSMITGYSQASQFSDAVKLFQEMMAAKVKPDKVTVASVLSA 358

Query: 429 CTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSY 488
           C H G +  G      +    G+  +      LI++  + G  ++ +    +M  + DS 
Sbjct: 359 CAHLGKLDVGWAVHHYIRRH-GVQADIYVGNSLIDMYCKCGMVEKALEVFHRMK-DKDSV 416

Query: 489 LWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEK 542
            W ++     ++G  +    +  Q++ +  Q   THG    I  A     LV K
Sbjct: 417 SWTSVISGLAVNGFANSALDLFSQMLREGVQ--PTHGTFVGILLACAHAGLVNK 468


>gi|357517181|ref|XP_003628879.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355522901|gb|AET03355.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 633

 Score =  297 bits (760), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 174/534 (32%), Positives = 285/534 (53%), Gaps = 41/534 (7%)

Query: 54  TLAFILQQCAES--KSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVF 111
           T  F+L+ CA     + + G +VH H+           L N         GSDV      
Sbjct: 118 TFPFLLKACANVLISAPQFGFQVHCHV-----------LRNGF-------GSDV------ 153

Query: 112 DKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLK 171
                   F  N +L+ Y   G + +A  +FD    RD VS+NTMI G+A+ G V    +
Sbjct: 154 --------FVNNALLNFYCGFGDVVNAYKVFDESFVRDCVSFNTMINGFARKGDVSGCFR 205

Query: 172 FYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVL--VTGFLSNVVISSSIVDA 229
            +  +R   +  +E++F  +L+ C  LE+ ++ RQVHG V   +  F  NV++ + +VD 
Sbjct: 206 VFGEMRGVCVRPDEYTFVALLSGCSVLEDYRIGRQVHGLVYRELGCFGGNVLLVNKLVDM 265

Query: 230 YAKCGELSDARRLFD--ETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTT 287
           YAKCG L  A  +    +     V  WT++VS YA  G+++ A +LF++M E++ VSWT 
Sbjct: 266 YAKCGRLVMAETVLSVVKPGKSVVAAWTSLVSAYALRGEVKVARRLFDQMGERDVVSWTA 325

Query: 288 LIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTN 347
           +I+GY+  G  Q+ALELF ++  L ++P++    + L ACA + +L+ G+++H      N
Sbjct: 326 MISGYSHAGCFQEALELFVKLEGLGMKPDEVAVVAALSACARLGALELGRRIHRQYAGEN 385

Query: 348 FRS--NTIVMSSLIDMYSKCGCLNDGRQVFDLT-DNKENSMLWNTMISALTQHGYDEQAI 404
           +    N    S+++DMY+KCG ++    VF  T D+K+ + L+N++IS L  HG  E A 
Sbjct: 386 WTCSINRGFTSAVVDMYAKCGSIDIALDVFRKTSDDKKTTFLYNSIISGLAHHGRGEYAK 445

Query: 405 RLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIEL 464
            LF +M    +KPD IT   +L+AC H GLV  G   FESM    G+ P  EH+ C+++L
Sbjct: 446 NLFEEMGLLGLKPDNITFVAVLSACGHCGLVDFGKKLFESMFTVYGVSPEMEHYGCMVDL 505

Query: 465 LAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATH 524
           L +AG  D+    + KMP++ ++ +W AL   C++HG++ + R    +L++      A +
Sbjct: 506 LGRAGHLDEAHRLILKMPFKANAVIWRALLSACKVHGDVALARVASYELVELQHDHGAGY 565

Query: 525 GLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHP 578
            +LS++ S   +      +R+ I+    +K    S++E+   +H F   D  HP
Sbjct: 566 VMLSNMLSDTDQHDEAASLRKAIDNVGIQKPPGWSYVEMNRSLHKFLAGDKSHP 619



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 110/462 (23%), Positives = 202/462 (43%), Gaps = 82/462 (17%)

Query: 89  FLSNHLI-SMYFKCGSDVDARKVFDKIPV----KNLFSYNNMLSGYANLGMMKHAR---N 140
           FLSN  I S+   C +   A +++  I V     NL     + + YA+    +       
Sbjct: 11  FLSNERIKSLLSSCKTMQQAHQIYAHIIVTGRHNNLHLSTTLFTFYASSSSSQSLHHSHT 70

Query: 141 LFDNMAERDVVSWNTMIIGYAK-SGAVEEGLKFYKVLRRFSISCNEFSFAGILTIC--VK 197
           LF  +   D+  WN +I  Y++     +     +K +   S+  + F+F  +L  C  V 
Sbjct: 71  LFTQITNPDIFLWNAIIKAYSQIHSPPQHPFSLFKTMLNSSVLPDSFTFPFLLKACANVL 130

Query: 198 LEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTM 257
           +   +   QVH  VL  GF S+V +++++++ Y   G++ +A ++FDE+  RD +++ TM
Sbjct: 131 ISAPQFGFQVHCHVLRNGFGSDVFVNNALLNFYCGFGDVVNAYKVFDESFVRDCVSFNTM 190

Query: 258 VSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQ 317
           ++G+A+ GD+    ++F EM                                 + +RP++
Sbjct: 191 INGFARKGDVSGCFRVFGEMRG-------------------------------VCVRPDE 219

Query: 318 HTFSSCLCACASIVSLKHGKQVHGFLIRT--NFRSNTIVMSSLIDMYSKCGCLNDGRQVF 375
           +TF + L  C+ +   + G+QVHG + R    F  N ++++ L+DMY+KCG L     V 
Sbjct: 220 YTFVALLSGCSVLEDYRIGRQVHGLVYRELGCFGGNVLLVNKLVDMYAKCGRLVMAETVL 279

Query: 376 DLTD-NKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGL 434
            +    K     W +++SA    G  + A RLF  M       D ++   +++  +H+G 
Sbjct: 280 SVVKPGKSVVAAWTSLVSAYALRGEVKVARRLFDQMGER----DVVSWTAMISGYSHAGC 335

Query: 435 VQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALH 494
            QE L  F  +   LG+ P++      + ++A                         AL 
Sbjct: 336 FQEALELFVKL-EGLGMKPDE------VAVVA-------------------------ALS 363

Query: 495 GVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGK 536
              R+ G +++GR++  Q   +N   S   G  S++     K
Sbjct: 364 ACARL-GALELGRRIHRQYAGENWTCSINRGFTSAVVDMYAK 404



 Score = 55.8 bits (133), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 56/232 (24%), Positives = 106/232 (45%), Gaps = 15/232 (6%)

Query: 21  IQSFLSLIS----KGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHL 76
           + S+ ++IS     G   EA+     L   G++     +   L  CA   +L+LG+R+H 
Sbjct: 320 VVSWTAMISGYSHAGCFQEALELFVKLEGLGMKPDEVAVVAALSACARLGALELGRRIHR 379

Query: 77  HLKLTQRKTPTT-FLSNHLISMYFKCGSDVDARKVFDKIP--VKNLFSYNNMLSGYANLG 133
                          ++ ++ MY KCGS   A  VF K     K  F YN+++SG A+ G
Sbjct: 380 QYAGENWTCSINRGFTSAVVDMYAKCGSIDIALDVFRKTSDDKKTTFLYNSIISGLAHHG 439

Query: 134 MMKHARNLFDNMA----ERDVVSWNTMIIGYAKSGAVEEGLKFYK-VLRRFSISCNEFSF 188
             ++A+NLF+ M     + D +++  ++      G V+ G K ++ +   + +S     +
Sbjct: 440 RGEYAKNLFEEMGLLGLKPDNITFVAVLSACGHCGLVDFGKKLFESMFTVYGVSPEMEHY 499

Query: 189 AGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDAR 240
             ++ +  +   L    + H  +L   F +N VI  +++ A    G+++ AR
Sbjct: 500 GCMVDLLGRAGHLD---EAHRLILKMPFKANAVIWRALLSACKVHGDVALAR 548


>gi|359475368|ref|XP_003631669.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Vitis vinifera]
          Length = 891

 Score =  297 bits (760), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 182/570 (31%), Positives = 292/570 (51%), Gaps = 67/570 (11%)

Query: 27  LISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTP 86
           LI  G  ++A+  LD +   GI++   T+  IL  C +   +     +HL++        
Sbjct: 291 LIQNGNAAQALDVLDEMRLEGIKMNFVTVVSILPVCPQLGDISTAMLIHLYV-------- 342

Query: 87  TTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMA 146
                        K G + D            LF  N +++ YA  G ++ AR  F  M 
Sbjct: 343 ------------IKHGLEFD------------LFVSNALINMYAKFGNLEDARKAFQQMF 378

Query: 147 ERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQ 206
             DVVSWN++I  Y ++        F+  ++      +  +   + +I  +  + K +R 
Sbjct: 379 ITDVVSWNSIIAAYEQNDDPVTAHGFFVKMQLNGFQPDLLTLVSLASIVAQSRDCKNSRS 438

Query: 207 VHGQVLVTGFL-SNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLG 265
           VHG ++  G+L  +VVI +++VD YA                               KLG
Sbjct: 439 VHGFIMRRGWLMEDVVIGNAVVDMYA-------------------------------KLG 467

Query: 266 DMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILR-IRPNQHTFSSCL 324
            ++SA K+F  +P K+ +SW TLI GY +NGL  +A+E++  M   + I PNQ T+ S L
Sbjct: 468 LLDSAHKVFEIIPVKDVISWNTLITGYAQNGLASEAIEVYKMMEECKEIIPNQGTWVSIL 527

Query: 325 CACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENS 384
            A A + +L+ G ++HG +I+TN   +  V + LID+Y KCG L D   +F     +E+S
Sbjct: 528 PAYAHVGALQQGMKIHGRVIKTNLHLDVFVATCLIDVYGKCGRLVDAMSLFYQVP-QESS 586

Query: 385 MLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFES 444
           + WN +IS    HG+ E+ ++LF +M+   VKPD +T   +L+AC+HSG V+EG   F  
Sbjct: 587 VTWNAIISCHGIHGHAEKTLKLFGEMLDEGVKPDHVTFVSLLSACSHSGFVEEGKWCFRL 646

Query: 445 MTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNID 504
           M  + GI P+ +H+ C+++LL +AG  +   + ++ MP + D+ +W AL G CRIHGNI+
Sbjct: 647 M-QEYGIKPSLKHYGCMVDLLGRAGYLEMAYDFIKDMPLQPDASIWGALLGACRIHGNIE 705

Query: 505 MGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIE 564
           +G+   D+L + + ++   + LLS+IY+ +GK   V+KVR L  ER  KK    S IE+ 
Sbjct: 706 LGKFASDRLFEVDSKNVGYYVLLSNIYANVGKWEGVDKVRSLARERGLKKTPGWSTIEVN 765

Query: 565 NKVHAFSVSDSLHPMRDVLYSVLEQLAGQM 594
            KV  F   +  HP    +Y  L  L  +M
Sbjct: 766 RKVDVFYTGNQSHPKCKEIYEELRVLTAKM 795



 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 118/453 (26%), Positives = 210/453 (46%), Gaps = 52/453 (11%)

Query: 101 CGSDVDARKV----FDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTM 156
           CG+ VD RK+    F      N+F   +++  Y+  G    AR+LFD+M  RD+ SWN M
Sbjct: 228 CGTLVDGRKIHCWAFKLGFQWNVFVAASLIHMYSRFGFTGIARSLFDDMPFRDMGSWNAM 287

Query: 157 IIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGF 216
           I G  ++G   + L     +R   I  N  +   IL +C +L ++     +H  V+  G 
Sbjct: 288 ISGLIQNGNAAQALDVLDEMRLEGIKMNFVTVVSILPVCPQLGDISTAMLIHLYVIKHGL 347

Query: 217 LSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNE 276
             ++ +S+++++ YAK G L DAR+ F +    DV++W ++++ Y +  D          
Sbjct: 348 EFDLFVSNALINMYAKFGNLEDARKAFQQMFITDVVSWNSIIAAYEQNDD---------- 397

Query: 277 MPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHG 336
                PV+                A   F +M +   +P+  T  S     A     K+ 
Sbjct: 398 -----PVT----------------AHGFFVKMQLNGFQPDLLTLVSLASIVAQSRDCKNS 436

Query: 337 KQVHGFLIRTNF-RSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALT 395
           + VHGF++R  +   + ++ ++++DMY+K G L+   +VF++   K+  + WNT+I+   
Sbjct: 437 RSVHGFIMRRGWLMEDVVIGNAVVDMYAKLGLLDSAHKVFEIIPVKD-VISWNTLITGYA 495

Query: 396 QHGYDEQAIRLFHDMVR-SSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPN 454
           Q+G   +AI ++  M     + P++ T   IL A  H G +Q+G+           +I  
Sbjct: 496 QNGLASEAIEVYKMMEECKEIIPNQGTWVSILPAYAHVGALQQGMKIHGR------VIKT 549

Query: 455 QEH-----HACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKV 509
             H       CLI++  + G     M+   ++P E  S  WNA+     IHG+ +   K+
Sbjct: 550 NLHLDVFVATCLIDVYGKCGRLVDAMSLFYQVPQE-SSVTWNAIISCHGIHGHAEKTLKL 608

Query: 510 VDQLIDQNPQSSATHGLLSSIYSALGKGRLVEK 542
             +++D+  +    H    S+ SA      VE+
Sbjct: 609 FGEMLDEGVKPD--HVTFVSLLSACSHSGFVEE 639



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 63/231 (27%), Positives = 108/231 (46%), Gaps = 34/231 (14%)

Query: 203 LTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYA 262
             + +H  ++V G + ++ IS+ +V+ YA  G++S +R  FD+   +DV  W +M+S Y 
Sbjct: 134 FAKCLHALLVVAGKVQSIFISTRLVNLYANLGDVSLSRCTFDQIPQKDVYAWNSMISAYV 193

Query: 263 KLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSS 322
             G    A   F ++                              +++  IRP+ +TF  
Sbjct: 194 HNGHFHEAIGCFYQL------------------------------LLVSEIRPDFYTFPP 223

Query: 323 CLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKE 382
            L AC ++V    G+++H +  +  F+ N  V +SLI MYS+ G     R +FD    ++
Sbjct: 224 VLKACGTLVD---GRKIHCWAFKLGFQWNVFVAASLIHMYSRFGFTGIARSLFDDMPFRD 280

Query: 383 NSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSG 433
               WN MIS L Q+G   QA+ +  +M    +K + +T+  IL  C   G
Sbjct: 281 MGS-WNAMISGLIQNGNAAQALDVLDEMRLEGIKMNFVTVVSILPVCPQLG 330


>gi|224117876|ref|XP_002317690.1| predicted protein [Populus trichocarpa]
 gi|222860755|gb|EEE98302.1| predicted protein [Populus trichocarpa]
          Length = 706

 Score =  297 bits (760), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 168/558 (30%), Positives = 284/558 (50%), Gaps = 66/558 (11%)

Query: 28  ISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPT 87
           +  G + +A    + +   GI+  + T    L   AES SLK  K +H ++ +       
Sbjct: 188 VQNGFMDDASMLFNEMISAGIKPDSITFTSFLPSLAESSSLKQIKEIHGYI-VRHGVILD 246

Query: 88  TFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAE 147
            +L++ LI +YFKC   V A K+F                                N++ 
Sbjct: 247 VYLNSALIDLYFKCRDAVMACKMF--------------------------------NLST 274

Query: 148 R-DVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQ 206
           + D+V +  MI GY  +G  ++ L+ ++ L +  +  N  +F+ IL  C  L  +KL R+
Sbjct: 275 KFDIVIYTAMISGYVLNGMNKDALEIFRWLLQKKMIPNALTFSSILPACAGLAAIKLGRE 334

Query: 207 VHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGD 266
           +HG ++         + S+I++ YAKCG L                              
Sbjct: 335 LHGYIIKNELEEKCPVGSAIMNMYAKCGRL------------------------------ 364

Query: 267 MESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCA 326
            + A  +F  +  K+ + W ++I  ++++G  ++A+ LF +M +  ++ +  T S+ L A
Sbjct: 365 -DLAHLIFGRISIKDAICWNSIITSFSQDGKPEEAIYLFRQMGMEGVKYDCVTVSAALSA 423

Query: 327 CASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSML 386
           CA+I +L +GK++HGF+I+  F S+   MS+LI+MY+KCG LN  R VF+L   K N + 
Sbjct: 424 CANIPALHYGKEIHGFMIKGAFESDLFDMSALINMYAKCGKLNIARLVFNLMQEK-NEVA 482

Query: 387 WNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMT 446
           WN++I+A   HGY   ++ LFH+M+   ++PD IT   IL++C H+G V++G+ YF  MT
Sbjct: 483 WNSIIAAYGYHGYLADSLALFHNMLEEGIQPDHITFLTILSSCGHAGQVEDGVRYFRCMT 542

Query: 447 HDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMG 506
            + GI    EH+AC+ +L  +AG  D+    +  MP+   + +W  L G CR+HGN+++ 
Sbjct: 543 EEYGIPAQMEHYACMADLFGRAGHLDEAFEVITSMPFPPAASVWGTLLGACRVHGNVELA 602

Query: 507 RKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENK 566
                 L+D  P++S  + LL+ + +  GK R V K++ L+ ER  +K    SWIE+ N 
Sbjct: 603 EVASRYLLDLEPKNSGYYLLLTHVLADAGKWRSVHKIQHLMKERGVQKVPGCSWIEVNNT 662

Query: 567 VHAFSVSDSLHPMRDVLY 584
              F  +D  HP    +Y
Sbjct: 663 TCVFFAADGSHPESPQIY 680



 Score =  154 bits (388), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 93/321 (28%), Positives = 167/321 (52%), Gaps = 32/321 (9%)

Query: 118 NLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLR 177
           ++F  ++++  YA+ G ++ AR  FD M ++D V WN MI GY + G  +  +K +K + 
Sbjct: 44  DMFVASSLIKLYADNGCIEDARRFFDKMIDKDCVLWNVMINGYVQCGESDSAIKLFKDMM 103

Query: 178 RFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELS 237
                 +  +FA +L+I      ++  RQ+HG V+ +G     ++ +++V  Y+K  +L 
Sbjct: 104 SSEAKPDSVTFACVLSISCSEAMVEYGRQLHGLVVRSGLDFVPLVGNTLVTVYSKGRQLG 163

Query: 238 DARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGL 297
           DAR+LFD     D++ W  M+ GY + G M+ AS LFNEM          + AG      
Sbjct: 164 DARKLFDMMPQIDLVVWNRMIGGYVQNGFMDDASMLFNEM----------ISAG------ 207

Query: 298 GQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSS 357
                          I+P+  TF+S L + A   SLK  K++HG+++R     +  + S+
Sbjct: 208 ---------------IKPDSITFTSFLPSLAESSSLKQIKEIHGYIVRHGVILDVYLNSA 252

Query: 358 LIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKP 417
           LID+Y KC       ++F+L+  K + +++  MIS    +G ++ A+ +F  +++  + P
Sbjct: 253 LIDLYFKCRDAVMACKMFNLS-TKFDIVIYTAMISGYVLNGMNKDALEIFRWLLQKKMIP 311

Query: 418 DKITLAVILNACTHSGLVQEG 438
           + +T + IL AC     ++ G
Sbjct: 312 NALTFSSILPACAGLAAIKLG 332



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 76/292 (26%), Positives = 146/292 (50%), Gaps = 35/292 (11%)

Query: 184 NEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLF 243
           ++++F  ++  C  L  ++L + +   +L  GF  ++ ++SS++  YA  G + DARR F
Sbjct: 9   DKYTFPPVIKCCTGLNNVRLGKVIQDMILEMGFDLDMFVASSLIKLYADNGCIEDARRFF 68

Query: 244 DETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALE 303
           D+   +D + W  M++GY + G+ +SA KLF +                           
Sbjct: 69  DKMIDKDCVLWNVMINGYVQCGESDSAIKLFKD--------------------------- 101

Query: 304 LFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYS 363
               MM    +P+  TF+  L    S   +++G+Q+HG ++R+      +V ++L+ +YS
Sbjct: 102 ----MMSSEAKPDSVTFACVLSISCSEAMVEYGRQLHGLVVRSGLDFVPLVGNTLVTVYS 157

Query: 364 KCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLA 423
           K   L D R++FD+   + + ++WN MI    Q+G+ + A  LF++M+ + +KPD IT  
Sbjct: 158 KGRQLGDARKLFDMMP-QIDLVVWNRMIGGYVQNGFMDDASMLFNEMISAGIKPDSITFT 216

Query: 424 VILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLM 475
             L +   S  +++ +          G+I +   ++ LI+L  +  C D +M
Sbjct: 217 SFLPSLAESSSLKQ-IKEIHGYIVRHGVILDVYLNSALIDLYFK--CRDAVM 265



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 43/131 (32%), Positives = 73/131 (55%), Gaps = 1/131 (0%)

Query: 308 MMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGC 367
           M+   + P+++TF   +  C  + +++ GK +   ++   F  +  V SSLI +Y+  GC
Sbjct: 1   MLGCGVFPDKYTFPPVIKCCTGLNNVRLGKVIQDMILEMGFDLDMFVASSLIKLYADNGC 60

Query: 368 LNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILN 427
           + D R+ FD   +K+  +LWN MI+   Q G  + AI+LF DM+ S  KPD +T A +L+
Sbjct: 61  IEDARRFFDKMIDKD-CVLWNVMINGYVQCGESDSAIKLFKDMMSSEAKPDSVTFACVLS 119

Query: 428 ACTHSGLVQEG 438
                 +V+ G
Sbjct: 120 ISCSEAMVEYG 130



 Score = 65.9 bits (159), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 45/163 (27%), Positives = 80/163 (49%), Gaps = 8/163 (4%)

Query: 18  NCLIQSFLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLH 77
           N +I SF      G+  EAI     +   G++    T++  L  CA   +L  GK +H  
Sbjct: 383 NSIITSF---SQDGKPEEAIYLFRQMGMEGVKYDCVTVSAALSACANIPALHYGKEIH-G 438

Query: 78  LKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKH 137
             +        F  + LI+MY KCG    AR VF+ +  KN  ++N++++ Y   G +  
Sbjct: 439 FMIKGAFESDLFDMSALINMYAKCGKLNIARLVFNLMQEKNEVAWNSIIAAYGYHGYLAD 498

Query: 138 ARNLFDNMAER----DVVSWNTMIIGYAKSGAVEEGLKFYKVL 176
           +  LF NM E     D +++ T++     +G VE+G+++++ +
Sbjct: 499 SLALFHNMLEEGIQPDHITFLTILSSCGHAGQVEDGVRYFRCM 541


>gi|357127388|ref|XP_003565363.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g01510-like [Brachypodium distachyon]
          Length = 814

 Score =  297 bits (760), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 150/477 (31%), Positives = 265/477 (55%), Gaps = 32/477 (6%)

Query: 118 NLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLR 177
           N+F  N++L  Y+    +   + LF  M ERD VS+N MI GYA +      L+ ++ ++
Sbjct: 274 NVFVNNSLLDFYSKCDCLDEMKKLFHEMIERDNVSYNVMIAGYAWNRCASIVLRLFREMQ 333

Query: 178 RFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELS 237
             S       +A +L++   +  + + +Q+H Q+++ G  S  ++ ++++D Y+KCG L 
Sbjct: 334 SLSFDRQALPYASLLSVAGSVPHIGIGKQIHAQLVLLGLSSEDLVGNALIDMYSKCGML- 392

Query: 238 DARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGL 297
                                         ++A   F    +K  VSWT +I G  +NG 
Sbjct: 393 ------------------------------DAAKTNFINKNDKTGVSWTAMITGCVQNGQ 422

Query: 298 GQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSS 357
            ++AL+LF  M    + P++ TFSS + A +++  +  G+Q+H +LIR+   S+    S+
Sbjct: 423 QEEALQLFCGMRRAGLSPDRATFSSTIKASSNLAMIGLGRQLHSYLIRSGHMSSVFSGSA 482

Query: 358 LIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKP 417
           L+DMY+KCGCL++  Q FD    + NS+ WN +ISA   +G  + AI++F  M+    KP
Sbjct: 483 LLDMYTKCGCLDEALQTFDEMPER-NSISWNAVISAYAHYGQAKNAIKMFEGMLCYGFKP 541

Query: 418 DKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQ 477
           D +T   +L+AC+H+GL +E + YFE M ++ GI P +EH++C+I+ L + G  D++   
Sbjct: 542 DSVTFLSVLSACSHNGLAEECMKYFELMEYEYGISPWKEHYSCVIDTLGRVGRFDKVQEM 601

Query: 478 LEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKG 537
           L +MP+E D  +W+++   CR HGN D+ R   ++L       +  + +LS+I++  GK 
Sbjct: 602 LGEMPFEDDPIIWSSILHSCRTHGNQDLARVAAEKLFSMGSTDATPYVILSNIFAKAGKW 661

Query: 538 RLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQM 594
                V++++ +R  +KE   SW+E+++KV++FS +D  +PM   +   LE+L  +M
Sbjct: 662 EDAAGVKKIMRDRGLRKETGYSWVEVKHKVYSFSSNDQTNPMITEIKDELERLYKEM 718



 Score =  179 bits (455), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 131/484 (27%), Positives = 227/484 (46%), Gaps = 48/484 (9%)

Query: 118 NLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLR 177
           N+   N +L  Y   G++  AR +F  M  RD V++N M++G +K G+  E L  +  +R
Sbjct: 174 NVVVCNTLLDAYCKHGLLAAARRVFQEMPHRDSVTYNAMMMGCSKEGSHAEALDLFAAMR 233

Query: 178 RFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELS 237
           R  ++   F+F+ +LT+   + +L L RQVHG V      SNV +++S++D Y+KC  L 
Sbjct: 234 RKGLAATRFTFSTVLTVATGVGDLCLGRQVHGLV-ARATSSNVFVNNSLLDFYSKCDCLD 292

Query: 238 DARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGL 297
           + ++LF E   RD +++  M++GYA                      W         N  
Sbjct: 293 EMKKLFHEMIERDNVSYNVMIAGYA----------------------W---------NRC 321

Query: 298 GQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSS 357
               L LF  M  L        ++S L    S+  +  GKQ+H  L+     S  +V ++
Sbjct: 322 ASIVLRLFREMQSLSFDRQALPYASLLSVAGSVPHIGIGKQIHAQLVLLGLSSEDLVGNA 381

Query: 358 LIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKP 417
           LIDMYSKCG L+  +  F +  N +  + W  MI+   Q+G  E+A++LF  M R+ + P
Sbjct: 382 LIDMYSKCGMLDAAKTNF-INKNDKTGVSWTAMITGCVQNGQQEEALQLFCGMRRAGLSP 440

Query: 418 DKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQ 477
           D+ T +  + A ++  ++  G      +    G + +    + L+++  + GC D+ +  
Sbjct: 441 DRATFSSTIKASSNLAMIGLGRQLHSYLIRS-GHMSSVFSGSALLDMYTKCGCLDEALQT 499

Query: 478 LEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKG 537
            ++MP E +S  WNA+      +G      K+ + ++    +  +   L  S+ SA    
Sbjct: 500 FDEMP-ERNSISWNAVISAYAHYGQAKNAIKMFEGMLCYGFKPDSVTFL--SVLSACSHN 556

Query: 538 RLVEKVRQLINERQFKKEQAIS-WIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQMG- 595
            L E+  +     ++  E  IS W E     H   V D+L   R   +  ++++ G+M  
Sbjct: 557 GLAEECMKYFELMEY--EYGISPWKE-----HYSCVIDTLG--RVGRFDKVQEMLGEMPF 607

Query: 596 EDAP 599
           ED P
Sbjct: 608 EDDP 611



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 78/309 (25%), Positives = 142/309 (45%), Gaps = 40/309 (12%)

Query: 56  AFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIP 115
           A +L        + +GK++H  L L    +    + N LI MY KC              
Sbjct: 345 ASLLSVAGSVPHIGIGKQIHAQLVLLGLSS-EDLVGNALIDMYSKC-------------- 389

Query: 116 VKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKV 175
                            GM+  A+  F N  ++  VSW  MI G  ++G  EE L+ +  
Sbjct: 390 -----------------GMLDAAKTNFINKNDKTGVSWTAMITGCVQNGQQEEALQLFCG 432

Query: 176 LRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGE 235
           +RR  +S +  +F+  +     L  + L RQ+H  ++ +G +S+V   S+++D Y KCG 
Sbjct: 433 MRRAGLSPDRATFSSTIKASSNLAMIGLGRQLHSYLIRSGHMSSVFSGSALLDMYTKCGC 492

Query: 236 LSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMP----EKNPVSWTTLIAG 291
           L +A + FDE   R+ ++W  ++S YA  G  ++A K+F  M     + + V++ ++++ 
Sbjct: 493 LDEALQTFDEMPERNSISWNAVISAYAHYGQAKNAIKMFEGMLCYGFKPDSVTFLSVLSA 552

Query: 292 YTRNGLGQKALELFTRMMI-LRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRS 350
            + NGL ++ ++ F  M     I P +  +S   C   ++  +    +V   L    F  
Sbjct: 553 CSHNGLAEECMKYFELMEYEYGISPWKEHYS---CVIDTLGRVGRFDKVQEMLGEMPFED 609

Query: 351 NTIVMSSLI 359
           + I+ SS++
Sbjct: 610 DPIIWSSIL 618



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 61/239 (25%), Positives = 113/239 (47%), Gaps = 20/239 (8%)

Query: 209 GQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDAR-DVLTWTTMVSGYAKLGDM 267
            +++ TGF       + ++ +    G L+ AR LFD+   R +  +   M+SGY++ G +
Sbjct: 23  ARMVKTGFDPATYRLNLLLHSLISSGRLAQARALFDQMPHRNNAFSLNRMLSGYSRSGQL 82

Query: 268 ESASKLFNEMPE--KNPVSWTTLIAGYTR--NGLGQKALELFTRMMILRIRPNQHTFSSC 323
            +A  LF   P   ++ V+WT +I  +          A+ LF  M+   + P++ T ++ 
Sbjct: 83  SAAHHLFLSSPPHLRDAVTWTVMIGAFASAPGARASDAVSLFRDMLREGVAPDRVTVATV 142

Query: 324 L--------CACASIVSLKHGKQVHGFLIRTN-FRSNTIVMSSLIDMYSKCGCLNDGRQV 374
           L         A A I++      +H F ++     SN +V ++L+D Y K G L   R+V
Sbjct: 143 LNLPPASGGTAAAIIIA-----SLHPFALKLGLLHSNVVVCNTLLDAYCKHGLLAAARRV 197

Query: 375 FDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSG 433
           F    +++ S+ +N M+   ++ G   +A+ LF  M R  +   + T + +L   T  G
Sbjct: 198 FQEMPHRD-SVTYNAMMMGCSKEGSHAEALDLFAAMRRKGLAATRFTFSTVLTVATGVG 255



 Score = 69.7 bits (169), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 58/262 (22%), Positives = 129/262 (49%), Gaps = 14/262 (5%)

Query: 28  ISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPT 87
           +  GQ  EA+     + + G+     T +  ++  +    + LG+++H +L +      +
Sbjct: 418 VQNGQQEEALQLFCGMRRAGLSPDRATFSSTIKASSNLAMIGLGRQLHSYL-IRSGHMSS 476

Query: 88  TFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMA- 146
            F  + L+ MY KCG   +A + FD++P +N  S+N ++S YA+ G  K+A  +F+ M  
Sbjct: 477 VFSGSALLDMYTKCGCLDEALQTFDEMPERNSISWNAVISAYAHYGQAKNAIKMFEGMLC 536

Query: 147 ---ERDVVSWNTMIIGYAKSGAVEEGLKFYKVLR-RFSISCNEFSFAGILTICVKLEELK 202
              + D V++ +++   + +G  EE +K+++++   + IS  +  ++ ++    ++    
Sbjct: 537 YGFKPDSVTFLSVLSACSHNGLAEECMKYFELMEYEYGISPWKEHYSCVIDTLGRVGRFD 596

Query: 203 LTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDAR----RLFDETDARDVLTWTTMV 258
             +++ G++    F  + +I SSI+ +    G    AR    +LF    + D   +  + 
Sbjct: 597 KVQEMLGEM---PFEDDPIIWSSILHSCRTHGNQDLARVAAEKLF-SMGSTDATPYVILS 652

Query: 259 SGYAKLGDMESASKLFNEMPEK 280
           + +AK G  E A+ +   M ++
Sbjct: 653 NIFAKAGKWEDAAGVKKIMRDR 674



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 43/183 (23%), Positives = 76/183 (41%), Gaps = 13/183 (7%)

Query: 329 SIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVF-DLTDNKENSMLW 387
           S++S     Q      +   R+N   ++ ++  YS+ G L+    +F     +  +++ W
Sbjct: 43  SLISSGRLAQARALFDQMPHRNNAFSLNRMLSGYSRSGQLSAAHHLFLSSPPHLRDAVTW 102

Query: 388 NTMISALTQH--GYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEG--LTYFE 443
             MI A           A+ LF DM+R  V PD++T+A +LN    SG       +    
Sbjct: 103 TVMIGAFASAPGARASDAVSLFRDMLREGVAPDRVTVATVLNLPPASGGTAAAIIIASLH 162

Query: 444 SMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQ----LEKMPYEHDSYLWNALHGVCRI 499
                LG++     +  +   L  A C   L+       ++MP+  DS  +NA+   C  
Sbjct: 163 PFALKLGLL---HSNVVVCNTLLDAYCKHGLLAAARRVFQEMPHR-DSVTYNAMMMGCSK 218

Query: 500 HGN 502
            G+
Sbjct: 219 EGS 221


>gi|297745420|emb|CBI40500.3| unnamed protein product [Vitis vinifera]
          Length = 1133

 Score =  296 bits (759), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 176/591 (29%), Positives = 292/591 (49%), Gaps = 40/591 (6%)

Query: 9    GINRKNLPNNCLIQSFLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSL 68
            G+ R  L  N  ++ F S  S G L   +     L  +G+   +E  +  L+ C     +
Sbjct: 482  GLPRNYLKWNSFVEEFKS--SAGSLHIVLEVFKELHGKGVVFDSEVYSVALKTCTRVMDI 539

Query: 69   KLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSG 128
             LG  +H  L                     K G D+D   V+ +  + N          
Sbjct: 540  WLGMEIHGCL--------------------IKRGFDLD---VYLRCALMNF--------- 567

Query: 129  YANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSF 188
            Y     ++ A  +F  M   + + WN  II   +S  +++G++ ++ ++   +     + 
Sbjct: 568  YGRCWGLEKANQVFHEMPNPEALLWNEAIILNLQSEKLQKGVELFRKMQFSFLKAETATI 627

Query: 189  AGILTICV-KLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETD 247
              +L   + +L  L + ++ HG VL  GF  +V + +S++D Y K   L+ A+ +FD   
Sbjct: 628  VRVLQASISELGFLNMGKETHGYVLRNGFDCDVYVGTSLIDMYVKNHSLTSAQAVFDNMK 687

Query: 248  ARDVLTWTTMVSGYAKLGDMESASKLFNEMPEK----NPVSWTTLIAGYTRNGLGQKALE 303
             R++  W ++VSGY+  G  E A +L N+M ++    + V+W  +I+GY   G G++AL 
Sbjct: 688  NRNIFAWNSLVSGYSFKGMFEDALRLLNQMEKEGIKPDLVTWNGMISGYAMWGCGKEALA 747

Query: 304  LFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYS 363
             F +M    + PN  + +  L ACAS+  L+ GK++H   IR  F  +  V ++LIDMYS
Sbjct: 748  FFAQMQQEGVMPNSASITCLLRACASLSLLQKGKEIHCLSIRNGFIEDVFVATALIDMYS 807

Query: 364  KCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLA 423
            K   L +  +VF    NK  +  WN MI      G  ++AI +F++M +  V PD IT  
Sbjct: 808  KSSSLKNAHKVFRRIQNKTLAS-WNCMIMGFAIFGLGKEAISVFNEMQKVGVGPDAITFT 866

Query: 424  VILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPY 483
             +L+AC +SGL+ EG  YF+SM  D  I+P  EH+ C+++LL +AG  D+  + +  MP 
Sbjct: 867  ALLSACKNSGLIGEGWKYFDSMITDYRIVPRLEHYCCMVDLLGRAGYLDEAWDLIHTMPL 926

Query: 484  EHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKV 543
            + D+ +W AL G CRIH N+         L    P +SA + L+ ++YS   +   ++ +
Sbjct: 927  KPDATIWGALLGSCRIHKNLKFAETAAKNLFKLEPNNSANYILMMNLYSIFNRWEDMDHL 986

Query: 544  RQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQM 594
            R+L+     +  Q  SWI+I  +VH FS  +  HP    +Y  L QL  +M
Sbjct: 987  RELMGAAGVRNRQVWSWIQINQRVHVFSSDEKPHPDAGKIYFELYQLVSEM 1037



 Score =  125 bits (313), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 87/346 (25%), Positives = 156/346 (45%), Gaps = 35/346 (10%)

Query: 123 NNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKS-GAVEEGLKFYKVLRRFSI 181
            N++S Y   G    A  +F     R+ + WN+ +  +  S G++   L+ +K L    +
Sbjct: 460 KNLISSYLGFGDFWSAAMVFYVGLPRNYLKWNSFVEEFKSSAGSLHIVLEVFKELHGKGV 519

Query: 182 SCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARR 241
             +   ++  L  C ++ ++ L  ++HG ++  GF  +V +  ++++ Y +C  L  A  
Sbjct: 520 VFDSEVYSVALKTCTRVMDIWLGMEIHGCLIKRGFDLDVYLRCALMNFYGRCWGLEKA-- 577

Query: 242 LFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKA 301
                                        +++F+EMP    + W   I    ++   QK 
Sbjct: 578 -----------------------------NQVFHEMPNPEALLWNEAIILNLQSEKLQKG 608

Query: 302 LELFTRMMILRIRPNQHTFSSCLCACASIVS-LKHGKQVHGFLIRTNFRSNTIVMSSLID 360
           +ELF +M    ++    T    L A  S +  L  GK+ HG+++R  F  +  V +SLID
Sbjct: 609 VELFRKMQFSFLKAETATIVRVLQASISELGFLNMGKETHGYVLRNGFDCDVYVGTSLID 668

Query: 361 MYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKI 420
           MY K   L   + VFD   N+ N   WN+++S  +  G  E A+RL + M +  +KPD +
Sbjct: 669 MYVKNHSLTSAQAVFDNMKNR-NIFAWNSLVSGYSFKGMFEDALRLLNQMEKEGIKPDLV 727

Query: 421 TLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLA 466
           T   +++     G  +E L +F  M  + G++PN     CL+   A
Sbjct: 728 TWNGMISGYAMWGCGKEALAFFAQMQQE-GVMPNSASITCLLRACA 772


>gi|147841850|emb|CAN67319.1| hypothetical protein VITISV_039344 [Vitis vinifera]
          Length = 761

 Score =  296 bits (759), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 187/577 (32%), Positives = 291/577 (50%), Gaps = 89/577 (15%)

Query: 27  LISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTP 86
           LI  G+++EA +  D + QR I      +   +++   +K+ KL           +    
Sbjct: 77  LIRNGRINEARALFDAMPQRNIVTWNSMITGYVRRREMAKARKL---------FDEMPDR 127

Query: 87  TTFLSNHLISMYFKC-GSDVD-ARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDN 144
                N +IS Y  C G  V+  R +FD++P ++  S+N M+SGY   G M  A  LFD+
Sbjct: 128 DVVSWNLMISGYVSCRGRWVEEGRHLFDEMPERDCVSWNTMISGYTRSGRMDEALQLFDS 187

Query: 145 MAERDVVSWNTMIIGYAKSGAVEEGLKFY-KVLRRFSISCNEFSFAGILTICVKLEELK- 202
           M ER+VVSWN M+ G+ ++G VE  ++F+ ++  R S S +    AG++    +L+E K 
Sbjct: 188 MQERNVVSWNAMVTGFLQNGDVERAIEFFMRMPERDSASLSAL-VAGLIQNG-ELDEAKR 245

Query: 203 ---LTRQ--------VHG-QVLVTG-----------------------------FLSNVV 221
               TR+        VH   +L+ G                             F  NVV
Sbjct: 246 ILLTTRRQDDDKGDLVHAYNILLAGYGQNGRVDKARQLFDQIPFYDGGQKDGGRFERNVV 305

Query: 222 ISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMP--- 278
             +S++  Y K  ++  AR LFD+   RD ++W TM+SGY ++ DME A  LF EMP   
Sbjct: 306 SWNSMIMCYVKARDIFSARVLFDQMKERDTISWNTMISGYVRMSDMEEAWMLFQEMPNPD 365

Query: 279 ----------------------------EKNPVSWTTLIAGYTRNGLGQKALELFTRMMI 310
                                       +KN VSW ++IAGY  NG  + A EL+ +M++
Sbjct: 366 TLTWNSMISGFAQKGNLELARALFATIPQKNLVSWNSMIAGYENNGDYKGATELYRQMLL 425

Query: 311 LRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLND 370
              +P++HT SS L  C+   +L  G Q+H  + +T    +  + +SLI MYS+CG + +
Sbjct: 426 QGEKPDRHTLSSVLSVCSGFAALHLGMQIHQQITKTVI-PDIPINNSLITMYSRCGAIVE 484

Query: 371 GRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACT 430
            R +FD    ++  + WN MI     HG+   A+ LF  M R  V+P  IT   +LNAC 
Sbjct: 485 ARTIFDEVKLQKEVISWNAMIGGYAFHGFAADALELFELMKRLKVRPTYITFISVLNACA 544

Query: 431 HSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLW 490
           H+G V+EG  +F+SM  + GI P  EH A L++++ + G  ++ M+ +  MP+E D  +W
Sbjct: 545 HAGXVKEGRMHFKSMACEFGIEPRIEHFASLVDIVGRHGQLEEAMDLINSMPFEPDKAVW 604

Query: 491 NALHGVCRIHGNIDMGRKVVDQLIDQNPQSSAT-HGL 526
            AL G CR+H N+++ R   + L+   P+SSA  HGL
Sbjct: 605 GALLGACRVHNNVELARVAAEALMKLEPESSAPCHGL 641



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 127/507 (25%), Positives = 217/507 (42%), Gaps = 122/507 (24%)

Query: 75  HLHLKLTQRKTPTTFLS------NHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSG 128
           HLH  ++  + P   +S      N  IS   + G   +AR +FD +P +N+ ++N+M++G
Sbjct: 48  HLHCFVSTLQQPKNSVSLDLYTPNKRISHLIRNGRINEARALFDAMPQRNIVTWNSMITG 107

Query: 129 YANLGMMKHARNLFDNMAERDVVSWNTMIIGYA--KSGAVEEGLK-FYKVLRRFSISCNE 185
           Y     M  AR LFD M +RDVVSWN MI GY   +   VEEG   F ++  R  +S N 
Sbjct: 108 YVRRREMAKARKLFDEMPDRDVVSWNLMISGYVSCRGRWVEEGRHLFDEMPERDCVSWNT 167

Query: 186 ----FSFAGILTICVKL-EELKLTRQVHGQVLVTGFLSNVVISSSI-------------- 226
               ++ +G +   ++L + ++    V    +VTGFL N  +  +I              
Sbjct: 168 MISGYTRSGRMDEALQLFDSMQERNVVSWNAMVTGFLQNGDVERAIEFFMRMPERDSASL 227

Query: 227 ---------------------------------VDAY-------AKCGELSDARRLFDET 246
                                            V AY        + G +  AR+LFD+ 
Sbjct: 228 SALVAGLIQNGELDEAKRILLTTRRQDDDKGDLVHAYNILLAGYGQNGRVDKARQLFDQI 287

Query: 247 D------------ARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTR 294
                         R+V++W +M+  Y K  D+ SA  LF++M E++ +SW T+I+GY R
Sbjct: 288 PFYDGGQKDGGRFERNVVSWNSMIMCYVKARDIFSARVLFDQMKERDTISWNTMISGYVR 347

Query: 295 NGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIV 354
               ++A  LF  M      PN                                  +T+ 
Sbjct: 348 MSDMEEAWMLFQEM------PN---------------------------------PDTLT 368

Query: 355 MSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSS 414
            +S+I  +++ G L   R +F  T  ++N + WN+MI+    +G  + A  L+  M+   
Sbjct: 369 WNSMISGFAQKGNLELARALF-ATIPQKNLVSWNSMIAGYENNGDYKGATELYRQMLLQG 427

Query: 415 VKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQL 474
            KPD+ TL+ +L+ C+    +  G+   + +T    +IP+   +  LI + ++ G   + 
Sbjct: 428 EKPDRHTLSSVLSVCSGFAALHLGMQIHQQITKT--VIPDIPINNSLITMYSRCGAIVEA 485

Query: 475 MNQLEKMPYEHDSYLWNALHGVCRIHG 501
               +++  + +   WNA+ G    HG
Sbjct: 486 RTIFDEVKLQKEVISWNAMIGGYAFHG 512


>gi|15229764|ref|NP_187753.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169981|sp|Q9CAY1.1|PP223_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g11460
 gi|12322902|gb|AAG51440.1|AC008153_13 hypothetical protein; 50785-52656 [Arabidopsis thaliana]
 gi|332641528|gb|AEE75049.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 623

 Score =  296 bits (759), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 172/573 (30%), Positives = 281/573 (49%), Gaps = 62/573 (10%)

Query: 33  LSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSN 92
            SE+IS    + + G    A +  FIL+ CA       G+++H H+     +T   F+  
Sbjct: 34  FSESISLYRSMLRSGSSPDAFSFPFILKSCASLSLPVSGQQLHCHVTKGGCET-EPFVLT 92

Query: 93  HLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVS 152
            LISMY KCG   DARKVF++ P  +  S                             V 
Sbjct: 93  ALISMYCKCGLVADARKVFEENPQSSQLS-----------------------------VC 123

Query: 153 WNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVL 212
           +N +I GY  +  V +    ++ ++   +S +  +  G++ +C   E L L R +HGQ +
Sbjct: 124 YNALISGYTANSKVTDAAYMFRRMKETGVSVDSVTMLGLVPLCTVPEYLWLGRSLHGQCV 183

Query: 213 VTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASK 272
             G  S V + +S +  Y KCG +                               E+  +
Sbjct: 184 KGGLDSEVAVLNSFITMYMKCGSV-------------------------------EAGRR 212

Query: 273 LFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVS 332
           LF+EMP K  ++W  +I+GY++NGL    LEL+ +M    + P+  T  S L +CA + +
Sbjct: 213 LFDEMPVKGLITWNAVISGYSQNGLAYDVLELYEQMKSSGVCPDPFTLVSVLSSCAHLGA 272

Query: 333 LKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMIS 392
            K G +V   +    F  N  V ++ I MY++CG L   R VFD+   K + + W  MI 
Sbjct: 273 KKIGHEVGKLVESNGFVPNVFVSNASISMYARCGNLAKARAVFDIMPVK-SLVSWTAMIG 331

Query: 393 ALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGII 452
               HG  E  + LF DM++  ++PD     ++L+AC+HSGL  +GL  F +M  +  + 
Sbjct: 332 CYGMHGMGEIGLMLFDDMIKRGIRPDGAVFVMVLSACSHSGLTDKGLELFRAMKREYKLE 391

Query: 453 PNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQ 512
           P  EH++CL++LL +AG  D+ M  +E MP E D  +W AL G C+IH N+DM      +
Sbjct: 392 PGPEHYSCLVDLLGRAGRLDEAMEFIESMPVEPDGAVWGALLGACKIHKNVDMAELAFAK 451

Query: 513 LIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSV 572
           +I+  P +   + L+S+IYS       + ++R ++ ER F+K+   S++E + +VH F  
Sbjct: 452 VIEFEPNNIGYYVLMSNIYSDSKNQEGIWRIRVMMRERAFRKKPGYSYVEHKGRVHLFLA 511

Query: 573 SDSLHPMRDVLYSVLEQLAGQMGEDAPSLDADR 605
            D  H   + ++ +L++L   + E A ++D DR
Sbjct: 512 GDRSHEQTEEVHRMLDELETSVMELAGNMDCDR 544



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 101/407 (24%), Positives = 173/407 (42%), Gaps = 40/407 (9%)

Query: 153 WNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVL 212
           WN  +   A      E +  Y+ + R   S + FSF  IL  C  L      +Q+H  V 
Sbjct: 21  WNVRLRELAYQSLFSESISLYRSMLRSGSSPDAFSFPFILKSCASLSLPVSGQQLHCHVT 80

Query: 213 VTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLT--WTTMVSGYAKLGDMESA 270
             G  +   + ++++  Y KCG ++DAR++F+E      L+  +  ++SGY     +  A
Sbjct: 81  KGGCETEPFVLTALISMYCKCGLVADARKVFEENPQSSQLSVCYNALISGYTANSKVTDA 140

Query: 271 SKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASI 330
           + +F  M E                G+   ++ +      L + P        LC     
Sbjct: 141 AYMFRRMKE---------------TGVSVDSVTM------LGLVP--------LCTVPEY 171

Query: 331 VSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTM 390
           + L  G+ +HG  ++    S   V++S I MY KCG +  GR++FD    K   + WN +
Sbjct: 172 LWL--GRSLHGQCVKGGLDSEVAVLNSFITMYMKCGSVEAGRRLFDEMPVK-GLITWNAV 228

Query: 391 ISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLG 450
           IS  +Q+G     + L+  M  S V PD  TL  +L++C H G  + G      +    G
Sbjct: 229 ISGYSQNGLAYDVLELYEQMKSSGVCPDPFTLVSVLSSCAHLGAKKIGHE-VGKLVESNG 287

Query: 451 IIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVV 510
            +PN       I + A+ G   +     + MP +     W A+ G   +HG  ++G  + 
Sbjct: 288 FVPNVFVSNASISMYARCGNLAKARAVFDIMPVK-SLVSWTAMIGCYGMHGMGEIGLMLF 346

Query: 511 DQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLIN--ERQFKKE 555
           D +I +  +      +   + SA     L +K  +L    +R++K E
Sbjct: 347 DDMIKRGIRPDGA--VFVMVLSACSHSGLTDKGLELFRAMKREYKLE 391



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 109/520 (20%), Positives = 206/520 (39%), Gaps = 82/520 (15%)

Query: 18  NCLIQSFLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLH 77
           N LI  +    +  ++++A      + + G+ + + T+  ++  C   + L LG+ +H  
Sbjct: 125 NALISGY---TANSKVTDAAYMFRRMKETGVSVDSVTMLGLVPLCTVPEYLWLGRSLHGQ 181

Query: 78  LKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKH 137
                  +    L N  I+MY KCGS    R++FD++PVK L ++N ++SGY+  G+   
Sbjct: 182 CVKGGLDSEVAVL-NSFITMYMKCGSVEAGRRLFDEMPVKGLITWNAVISGYSQNGLAYD 240

Query: 138 ARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVK 197
              L++ M    V                                 + F+   +L+ C  
Sbjct: 241 VLELYEQMKSSGVCP-------------------------------DPFTLVSVLSSCAH 269

Query: 198 LEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTM 257
           L   K+  +V   V   GF+ NV +S++ +  YA+CG L+ AR +FD    + +++WT M
Sbjct: 270 LGAKKIGHEVGKLVESNGFVPNVFVSNASISMYARCGNLAKARAVFDIMPVKSLVSWTAM 329

Query: 258 VSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQ 317
                                          I  Y  +G+G+  L LF  M+   IRP+ 
Sbjct: 330 -------------------------------IGCYGMHGMGEIGLMLFDDMIKRGIRPDG 358

Query: 318 HTFSSCLCACASIVSLKHGKQVHGFLIRT-NFRSNTIVMSSLIDMYSKCGCLNDGRQVFD 376
             F   L AC+       G ++   + R           S L+D+  + G L++  +  +
Sbjct: 359 AVFVMVLSACSHSGLTDKGLELFRAMKREYKLEPGPEHYSCLVDLLGRAGRLDEAMEFIE 418

Query: 377 LTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQ 436
               + +  +W  ++ A   H   + A   F  ++    +P+ I   V+++        Q
Sbjct: 419 SMPVEPDGAVWGALLGACKIHKNVDMAELAFAKVIE--FEPNNIGYYVLMSNIYSDSKNQ 476

Query: 437 EGLTYFESMTHDLGI--IPNQEH--HACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNA 492
           EG+     M  +      P   +  H   + L      S +   ++ +M  E ++     
Sbjct: 477 EGIWRIRVMMRERAFRKKPGYSYVEHKGRVHLFLAGDRSHEQTEEVHRMLDELET----- 531

Query: 493 LHGVCRIHGNIDM--GRKVVDQLIDQNPQSSATHGLLSSI 530
              V  + GN+D   G +V     + + + +   G+L+SI
Sbjct: 532 --SVMELAGNMDCDRGEEVSSTTREHSERLAIAFGILNSI 569


>gi|345505234|gb|AEN99841.1| chlororespiratory reduction 4, partial [Raphanus sativus]
          Length = 577

 Score =  296 bits (759), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 168/533 (31%), Positives = 280/533 (52%), Gaps = 45/533 (8%)

Query: 42  LLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKC 101
           L+ + G+ +   +++ +L+ C+     K G +VH  L +  R     FL N LI +Y KC
Sbjct: 83  LMLENGVLVDKFSMSLVLKACSRLGFAKEGMQVHGFL-IKSRTWSDLFLQNCLIGLYLKC 141

Query: 102 GSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMA--ERDVVSWNTMIIG 159
           G    AR+VFD++P ++  SYN+M+ GY   G+++ A  LFD M   +R++++WN+MI G
Sbjct: 142 GCLGFARQVFDRMPQRDSVSYNSMIDGYVKCGLVESAGELFDLMPREKRNLITWNSMIGG 201

Query: 160 YA-KSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLS 218
           YA ++  V    K +  +                                          
Sbjct: 202 YAQRADGVNVASKLFDEMPE---------------------------------------K 222

Query: 219 NVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMP 278
           +++  +S++  Y K G + DA+ LFD    RDV+TW  M+ GY KLG +  A  LF++MP
Sbjct: 223 DLISWNSMIGGYVKHGRIEDAKGLFDVMPRRDVVTWAIMIDGYGKLGLVHQAKTLFDQMP 282

Query: 279 EKNPVSWTTLIAGYTRNGLGQKALELFTRM-MILRIRPNQHTFSSCLCACASIVSLKHGK 337
            ++ V++ ++++G+ +N    +ALE+F  M     + P++ T    L A A +  L    
Sbjct: 283 HRDVVAYNSMMSGFVQNRYHIEALEVFNHMEKESHLSPDETTLVIVLSAIAQLGRLTKAI 342

Query: 338 QVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQH 397
            +H +++   F  +  +  +LIDMYSKCG +    +VF+  ++K     WN MI  L  H
Sbjct: 343 DMHLYIVEKRFLLSGKLGVALIDMYSKCGSIQHAMRVFEGIESKSIDH-WNAMIGGLAVH 401

Query: 398 GYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEH 457
           G  E A  +   + R S+KPD IT   +LNAC+HSGLV+EGL  FE M     I P  +H
Sbjct: 402 GLGESAFDMLLQIERRSIKPDHITFVGVLNACSHSGLVKEGLLCFELMRRKHKIEPRLQH 461

Query: 458 HACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQN 517
           + C++++LA++G  +   N +E+MP E +  +W      C  H   + G  V   LI Q 
Sbjct: 462 YGCMVDILARSGSIELAKNLIEEMPIEPNDVIWRTFLNACSHHKEFETGELVAKHLILQA 521

Query: 518 PQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAF 570
             + +++ LLS++Y++ G  + V +VR ++ E++ +K    SWIE++ +VH F
Sbjct: 522 GYNPSSYVLLSNMYASNGMWKDVRRVRTMMKEKKIEKLPGCSWIELDGRVHEF 574



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 95/374 (25%), Positives = 187/374 (50%), Gaps = 24/374 (6%)

Query: 148 RDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQV 207
           +D   WN +I  ++      + L  + ++    +  ++FS + +L  C +L   K   QV
Sbjct: 56  KDPFLWNAVIKSHSHGADPRKALLLFCLMLENGVLVDKFSMSLVLKACSRLGFAKEGMQV 115

Query: 208 HGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDM 267
           HG ++ +   S++ + + ++  Y KCG L  AR++FD    RD +++ +M+ GY K G +
Sbjct: 116 HGFLIKSRTWSDLFLQNCLIGLYLKCGCLGFARQVFDRMPQRDSVSYNSMIDGYVKCGLV 175

Query: 268 ESASKLFNEMP--EKNPVSWTTLIAGYTRNGLG-QKALELFTRMMILRIRPNQHTFSSCL 324
           ESA +LF+ MP  ++N ++W ++I GY +   G   A +LF  M      P +      L
Sbjct: 176 ESAGELFDLMPREKRNLITWNSMIGGYAQRADGVNVASKLFDEM------PEKD-----L 224

Query: 325 CACASIVS--LKHGK-QVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNK 381
            +  S++   +KHG+ +    L     R + +  + +ID Y K G ++  + +FD   ++
Sbjct: 225 ISWNSMIGGYVKHGRIEDAKGLFDVMPRRDVVTWAIMIDGYGKLGLVHQAKTLFDQMPHR 284

Query: 382 ENSMLWNTMISALTQHGYDEQAIRLFHDMVRSS-VKPDKITLAVILNACTHSGLVQEGLT 440
            + + +N+M+S   Q+ Y  +A+ +F+ M + S + PD+ TL ++L+A    G + + + 
Sbjct: 285 -DVVAYNSMMSGFVQNRYHIEALEVFNHMEKESHLSPDETTLVIVLSAIAQLGRLTKAID 343

Query: 441 YFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIH 500
               +     ++  +   A LI++ ++ G     M   E +  +   + WNA+ G   +H
Sbjct: 344 MHLYIVEKRFLLSGKLGVA-LIDMYSKCGSIQHAMRVFEGIESKSIDH-WNAMIGGLAVH 401

Query: 501 GNIDMGRKVVDQLI 514
           G   +G    D L+
Sbjct: 402 G---LGESAFDMLL 412


>gi|413925171|gb|AFW65103.1| hypothetical protein ZEAMMB73_773985 [Zea mays]
          Length = 567

 Score =  296 bits (759), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 169/538 (31%), Positives = 280/538 (52%), Gaps = 45/538 (8%)

Query: 92  NHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGM--MKHARNLFDN-MAER 148
           N  IS   + G    AR+VFD +  +++ S+N +L+     G   +  AR LFD  M  R
Sbjct: 19  NQRISALARAGDVAAARRVFDAMTHRDVVSWNALLTALWRAGRHHLPAARRLFDEAMPSR 78

Query: 149 DVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVH 208
           DVVSWN++I G    G ++    ++      +++      AG++         +L R V 
Sbjct: 79  DVVSWNSIIAGCLAHGDLDAASAYFAGAPERNVATWNAMLAGLV---------RLGRVVD 129

Query: 209 GQVLVTGFLS-NVVISSSIVDAYAKCGELSDARRLFDETDARDVLTW------------- 254
            Q L       NVV  +++VD  A+ GE+  AR +FD    R++++W             
Sbjct: 130 AQRLFDEMPERNVVSYTTMVDWLARRGEVERAREVFDSMPDRNLVSWAAMISGCVENGMF 189

Query: 255 ------------------TTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNG 296
                             T M++G+ K GD++SA +LF+ +  K+ +SW  +IAGY  NG
Sbjct: 190 VEARELFEAMPEKNVVACTAMITGHCKQGDVDSARRLFDGIRAKDVISWNAMIAGYVHNG 249

Query: 297 LGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMS 356
            G++A+ L   M    ++P+  T  + L AC+++  L+ GK  H   I+    S     +
Sbjct: 250 HGEEAMRLHALMFREGVKPDHATLIAVLTACSALALLRQGKSTHAIAIKAMLESGISFSN 309

Query: 357 SLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVK 416
           +L+ MYSKCG + +   VF +    ++ + WNT+I+A  QHG  ++ I LFH+M  + + 
Sbjct: 310 ALMTMYSKCGNVGESELVF-INLRTKDIVSWNTIIAAYAQHGKYQKVIALFHEMEVTGLI 368

Query: 417 PDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMN 476
           PD IT   +L+AC H G+V   L  F+ M+    I P  EH+AC++++L++AG  ++  +
Sbjct: 369 PDDITFLSVLSACGHVGMVDASLKLFDLMSSKYAISPRAEHYACIVDILSRAGQLEKASS 428

Query: 477 QLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGK 536
            ++ MP + +  +W +L G C+IHGN+ +G      L+  + QSS  + +LS+IY+A G 
Sbjct: 429 YIKHMPLKAEKNVWGSLLGACQIHGNVQLGELAAKMLVQSDSQSSGPYVILSNIYAAAGM 488

Query: 537 GRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQM 594
              V ++R  + ER  KK+   SW EI N+VH F   D+ HP    + S L +++  M
Sbjct: 489 WGQVNQIRGQMKERGVKKQPGYSWTEIGNEVHMFVGGDASHPEMRKIISELRKISFHM 546



 Score = 62.0 bits (149), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 65/293 (22%), Positives = 134/293 (45%), Gaps = 19/293 (6%)

Query: 9   GINRKNLPN-NCLIQSFLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKS 67
           GI  K++ + N +I  +   +  G   EA+    L+ + G++    TL  +L  C+    
Sbjct: 229 GIRAKDVISWNAMIAGY---VHNGHGEEAMRLHALMFREGVKPDHATLIAVLTACSALAL 285

Query: 68  LKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLS 127
           L+ GK  H        ++  +F SN L++MY KCG+  ++  VF  +  K++ S+N +++
Sbjct: 286 LRQGKSTHAIAIKAMLESGISF-SNALMTMYSKCGNVGESELVFINLRTKDIVSWNTIIA 344

Query: 128 GYANLGMMKHARNLFDNMAER----DVVSWNTMIIGYAKSGAVEEGLKFYKVL-RRFSIS 182
            YA  G  +    LF  M       D +++ +++      G V+  LK + ++  +++IS
Sbjct: 345 AYAQHGKYQKVIALFHEMEVTGLIPDDITFLSVLSACGHVGMVDASLKLFDLMSSKYAIS 404

Query: 183 CNEFSFAGILTICVKLEELKLTRQV--HGQVLVTGFLSNVVISSSIVDAYAKCGELSDAR 240
                +A I+ I  +  +L+       H  +     +   ++ +  +    + GEL  A 
Sbjct: 405 PRAEHYACIVDILSRAGQLEKASSYIKHMPLKAEKNVWGSLLGACQIHGNVQLGEL--AA 462

Query: 241 RLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPE----KNP-VSWTTL 288
           ++  ++D++    +  + + YA  G     +++  +M E    K P  SWT +
Sbjct: 463 KMLVQSDSQSSGPYVILSNIYAAAGMWGQVNQIRGQMKERGVKKQPGYSWTEI 515



 Score = 58.5 bits (140), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 48/202 (23%), Positives = 91/202 (45%), Gaps = 18/202 (8%)

Query: 248 ARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQ--KALELF 305
           AR +L     +S  A+ GD+ +A ++F+ M  ++ VSW  L+    R G      A  LF
Sbjct: 12  ARRLLRDNQRISALARAGDVAAARRVFDAMTHRDVVSWNALLTALWRAGRHHLPAARRLF 71

Query: 306 TRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKC 365
              M  R   +  +++S +  C +   L             N  +   +++ L+    + 
Sbjct: 72  DEAMPSR---DVVSWNSIIAGCLAHGDLDAASAYFAGAPERNVATWNAMLAGLV----RL 124

Query: 366 GCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDK--ITLA 423
           G + D +++FD    + N + + TM+  L + G  E+A  +F  M      PD+  ++ A
Sbjct: 125 GRVVDAQRLFDEMPER-NVVSYTTMVDWLARRGEVERAREVFDSM------PDRNLVSWA 177

Query: 424 VILNACTHSGLVQEGLTYFESM 445
            +++ C  +G+  E    FE+M
Sbjct: 178 AMISGCVENGMFVEARELFEAM 199


>gi|449475532|ref|XP_004154482.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 642

 Score =  296 bits (759), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 159/480 (33%), Positives = 261/480 (54%), Gaps = 21/480 (4%)

Query: 135 MKHARNLFDNMAERDVVSWNTMIIGYAKSG----AVEEGLKFYKVLRRFSISCNEFSFAG 190
           + +AR +F  M E +   WNT++   A++       E  + F  +L    +  N F+F  
Sbjct: 68  IDYARAVFRQMPEPNCFCWNTILRILAETNDEHLQSEALMLFSAMLCDGRVKPNRFTFPS 127

Query: 191 ILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLF------- 243
           +L  C +   L+  +Q+HG ++  GF  +  + S++V  Y  C  + DA  LF       
Sbjct: 128 VLKACARASRLREGKQIHGLIVKFGFHEDEFVISNLVRMYVMCAVMEDAYSLFCKNVVDF 187

Query: 244 -----DETDAR----DVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTR 294
                 E D R    +V+ W  M+ G  +LGD++SA  LF+EMP ++ VSW  +I+GY +
Sbjct: 188 DGSCQMELDKRKQDGNVVLWNIMIDGQVRLGDIKSAKNLFDEMPPRSVVSWNVMISGYAQ 247

Query: 295 NGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIV 354
           NG   +A+ LF  M    I PN  T  S L A A I +L+ GK +H +  +     + ++
Sbjct: 248 NGHFIEAINLFQEMQSSNIDPNYVTLVSVLPAIARIGALELGKWIHLYAGKNKVEIDDVL 307

Query: 355 MSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSS 414
            S+L+DMYSKCG ++   QVF+ T  K N++ W+ +I A   HG  E AI  FH M ++ 
Sbjct: 308 GSALVDMYSKCGSIDKALQVFE-TLPKRNAITWSAIIGAFAMHGRAEDAIIHFHLMGKAG 366

Query: 415 VKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQL 474
           V P+ +    IL+AC+H+GLV+EG ++F  M   +G+ P  EH+ C+++LL +AG  ++ 
Sbjct: 367 VTPNDVAYIGILSACSHAGLVEEGRSFFSHMVKVVGLQPRIEHYGCMVDLLGRAGHLEEA 426

Query: 475 MNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSAL 534
              +  MP E D  +W AL G C++H N+ MG +V + L++  P  S ++  LS++Y++L
Sbjct: 427 EELIRNMPIEPDDVIWKALLGACKMHKNLKMGERVAETLMELAPHDSGSYVALSNLYASL 486

Query: 535 GKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQM 594
           G    V +VR  +     +K+   SWIEI   +H F V D  H     + ++L +++ ++
Sbjct: 487 GNWEAVARVRLKMKGMDIRKDPGCSWIEIHGIIHEFLVEDDSHSKAKEIQAMLGEMSMKL 546



 Score =  122 bits (305), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 78/284 (27%), Positives = 142/284 (50%), Gaps = 24/284 (8%)

Query: 54  TLAFILQQCAESKSLKLGKRVH-LHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFD 112
           T   +L+ CA +  L+ GK++H L +K    +    F+ ++L+ MY  C    DA  +F 
Sbjct: 124 TFPSVLKACARASRLREGKQIHGLIVKFGFHED--EFVISNLVRMYVMCAVMEDAYSLFC 181

Query: 113 KIPVK----------------NLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTM 156
           K  V                 N+  +N M+ G   LG +K A+NLFD M  R VVSWN M
Sbjct: 182 KNVVDFDGSCQMELDKRKQDGNVVLWNIMIDGQVRLGDIKSAKNLFDEMPPRSVVSWNVM 241

Query: 157 IIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGF 216
           I GYA++G   E +  ++ ++  +I  N  +   +L    ++  L+L + +H        
Sbjct: 242 ISGYAQNGHFIEAINLFQEMQSSNIDPNYVTLVSVLPAIARIGALELGKWIHLYAGKNKV 301

Query: 217 LSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNE 276
             + V+ S++VD Y+KCG +  A ++F+    R+ +TW+ ++  +A  G  E A   F+ 
Sbjct: 302 EIDDVLGSALVDMYSKCGSIDKALQVFETLPKRNAITWSAIIGAFAMHGRAEDAIIHFHL 361

Query: 277 MPE----KNPVSWTTLIAGYTRNGLGQKALELFTRMM-ILRIRP 315
           M +     N V++  +++  +  GL ++    F+ M+ ++ ++P
Sbjct: 362 MGKAGVTPNDVAYIGILSACSHAGLVEEGRSFFSHMVKVVGLQP 405



 Score =  108 bits (270), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 86/341 (25%), Positives = 147/341 (43%), Gaps = 70/341 (20%)

Query: 266 DMESASKLFNEMPEKNPVSWTT---LIAGYTRNGLGQKALELFTRMMI-LRIRPNQHTFS 321
           D++ A  +F +MPE N   W T   ++A      L  +AL LF+ M+   R++PN+ TF 
Sbjct: 67  DIDYARAVFRQMPEPNCFCWNTILRILAETNDEHLQSEALMLFSAMLCDGRVKPNRFTFP 126

Query: 322 SCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVF------ 375
           S L ACA    L+ GKQ+HG +++  F  +  V+S+L+ MY  C  + D   +F      
Sbjct: 127 SVLKACARASRLREGKQIHGLIVKFGFHEDEFVISNLVRMYVMCAVMEDAYSLFCKNVVD 186

Query: 376 -------DLTDNKENSML---------------------------------WNTMISALT 395
                  +L   K++  +                                 WN MIS   
Sbjct: 187 FDGSCQMELDKRKQDGNVVLWNIMIDGQVRLGDIKSAKNLFDEMPPRSVVSWNVMISGYA 246

Query: 396 QHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQ 455
           Q+G+  +AI LF +M  S++ P+ +TL  +L A    G ++ G  +         +  + 
Sbjct: 247 QNGHFIEAINLFQEMQSSNIDPNYVTLVSVLPAIARIGALELG-KWIHLYAGKNKVEIDD 305

Query: 456 EHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNID--------MGR 507
              + L+++ ++ G  D+ +   E +P + ++  W+A+ G   +HG  +        MG+
Sbjct: 306 VLGSALVDMYSKCGSIDKALQVFETLP-KRNAITWSAIIGAFAMHGRAEDAIIHFHLMGK 364

Query: 508 KVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLIN 548
             V       P   A  G+L    SA     LVE+ R   +
Sbjct: 365 AGV------TPNDVAYIGIL----SACSHAGLVEEGRSFFS 395



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 60/291 (20%), Positives = 113/291 (38%), Gaps = 37/291 (12%)

Query: 31  GQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFL 90
           G   EAI+    +    I     TL  +L   A   +L+LGK +HL+    + +     L
Sbjct: 249 GHFIEAINLFQEMQSSNIDPNYVTLVSVLPAIARIGALELGKWIHLYAGKNKVEIDDV-L 307

Query: 91  SNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDV 150
            + L+ MY KCGS   A +VF+ +P                               +R+ 
Sbjct: 308 GSALVDMYSKCGSIDKALQVFETLP-------------------------------KRNA 336

Query: 151 VSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQ 210
           ++W+ +I  +A  G  E+ +  + ++ +  ++ N+ ++ GIL+ C     ++  R     
Sbjct: 337 ITWSAIIGAFAMHGRAEDAIIHFHLMGKAGVTPNDVAYIGILSACSHAGLVEEGRSFFSH 396

Query: 211 -VLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDAR-DVLTWTTMVSG---YAKLG 265
            V V G    +     +VD   + G L +A  L        D + W  ++     +  L 
Sbjct: 397 MVKVVGLQPRIEHYGCMVDLLGRAGHLEEAEELIRNMPIEPDDVIWKALLGACKMHKNLK 456

Query: 266 DMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPN 316
             E  ++   E+   +  S+  L   Y   G  +    +  +M  + IR +
Sbjct: 457 MGERVAETLMELAPHDSGSYVALSNLYASLGNWEAVARVRLKMKGMDIRKD 507


>gi|449452775|ref|XP_004144134.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g56310-like [Cucumis sativus]
 gi|449493602|ref|XP_004159370.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g56310-like [Cucumis sativus]
          Length = 548

 Score =  296 bits (759), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 164/487 (33%), Positives = 278/487 (57%), Gaps = 10/487 (2%)

Query: 118 NLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLR 177
           NLF  +  +    +LG+  +A ++F N    D+  +NT I   +K+ +    +  Y  +R
Sbjct: 56  NLF-LSQFIDACTSLGLSSYAFSIFSNKTHPDLRLYNTAIKALSKTSSPINAIWLYTRIR 114

Query: 178 RFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELS 237
              +  + +S   +L   VKL  +++ RQ+H Q + +    +V +++S++  Y+ CG +S
Sbjct: 115 IDGLRPDSYSIPSVLKAVVKLSAVEVGRQIHTQTVSSALDMDVNVATSLIQMYSSCGFVS 174

Query: 238 DARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGL 297
           DAR+LFD    +DV  W  MV+GY K+G+++SA K+FNEMP++N +SWTTLIAGY +   
Sbjct: 175 DARKLFDFVGFKDVALWNAMVAGYVKVGELKSARKVFNEMPQRNVISWTTLIAGYAQTNR 234

Query: 298 GQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSS 357
             +A+ELF +M +  + P++    + L ACA + +L+ G+ +H ++ +        + ++
Sbjct: 235 PHEAIELFRKMQLEEVEPDEIAMLAVLSACADLGALELGEWIHNYIEKHGLCRIVSLYNA 294

Query: 358 LIDMYSKCGCLNDGRQVFDLTDNKENSML-WNTMISALTQHGYDEQAIRLFHDMVRSSVK 416
           LIDMY+K G +    +VF+  + K+ S++ W+T+I+AL  HG   +AI +F  M ++ V+
Sbjct: 295 LIDMYAKSGNIRRALEVFE--NMKQKSVITWSTVIAALALHGLGGEAIDMFLRMEKAKVR 352

Query: 417 PDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMN 476
           P+++T   IL+AC+H G+V  G  YF+ M     I P  EH+ C+I+LLA+AG   +   
Sbjct: 353 PNEVTFVAILSACSHVGMVDVGRYYFDQMQSMYKIEPKIEHYGCMIDLLARAGYLQEAQK 412

Query: 477 QLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGK 536
            L  MP+E ++ +W +L      H + ++ +  +  L    P +S  + LLS+ Y+ALGK
Sbjct: 413 LLHDMPFEANAMIWGSLLAASNTHRDAELAQLALKHLAKLEPGNSGNYVLLSNTYAALGK 472

Query: 537 GRLVEKVRQLINERQFKKEQAISWIEIENKVHAF---SVSDS-LHPMRDVLYSVLEQL-- 590
                 VR+L+     KK    S IEI N V+ F    +SDS +H +  VL  ++ QL  
Sbjct: 473 WNESGTVRKLMRNAGVKKAPGGSVIEINNIVYEFLAGDMSDSQVHEIYHVLCKIILQLKM 532

Query: 591 AGQMGED 597
           AG   E+
Sbjct: 533 AGSYQEE 539



 Score =  155 bits (391), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 85/353 (24%), Positives = 180/353 (50%), Gaps = 35/353 (9%)

Query: 47  GIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVD 106
           G+R  + ++  +L+   +  ++++G+++H    ++        ++  LI MY  CG   D
Sbjct: 117 GLRPDSYSIPSVLKAVVKLSAVEVGRQIHTQ-TVSSALDMDVNVATSLIQMYSSCGFVSD 175

Query: 107 ARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAV 166
           ARK+FD +  K++  +N M++GY  +G +K AR +F+ M +R+V+SW T+I GYA++   
Sbjct: 176 ARKLFDFVGFKDVALWNAMVAGYVKVGELKSARKVFNEMPQRNVISWTTLIAGYAQTNRP 235

Query: 167 EEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSI 226
            E ++ ++ ++   +  +E +   +L+ C  L  L+L   +H  +   G    V + +++
Sbjct: 236 HEAIELFRKMQLEEVEPDEIAMLAVLSACADLGALELGEWIHNYIEKHGLCRIVSLYNAL 295

Query: 227 VDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWT 286
           +D YAK G +  A  +F+    + V+TW                               +
Sbjct: 296 IDMYAKSGNIRRALEVFENMKQKSVITW-------------------------------S 324

Query: 287 TLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRT 346
           T+IA    +GLG +A+++F RM   ++RPN+ TF + L AC+ +  +  G+      +++
Sbjct: 325 TVIAALALHGLGGEAIDMFLRMEKAKVRPNEVTFVAILSACSHVGMVDVGRYYFD-QMQS 383

Query: 347 NFRSNTIV--MSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQH 397
            ++    +     +ID+ ++ G L + +++      + N+M+W ++++A   H
Sbjct: 384 MYKIEPKIEHYGCMIDLLARAGYLQEAQKLLHDMPFEANAMIWGSLLAASNTH 436



 Score = 89.4 bits (220), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 67/296 (22%), Positives = 128/296 (43%), Gaps = 35/296 (11%)

Query: 249 RDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRM 308
           +D L  +  +     LG    A  +F+     +   + T I   ++      A+ L+TR+
Sbjct: 54  QDNLFLSQFIDACTSLGLSSYAFSIFSNKTHPDLRLYNTAIKALSKTSSPINAIWLYTRI 113

Query: 309 MILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCL 368
            I  +RP+ ++  S L A   + +++ G+Q+H   + +    +  V +SLI MYS CG +
Sbjct: 114 RIDGLRPDSYSIPSVLKAVVKLSAVEVGRQIHTQTVSSALDMDVNVATSLIQMYSSCGFV 173

Query: 369 NDGRQVFDLTDNKE----NSML--------------------------WNTMISALTQHG 398
           +D R++FD    K+    N+M+                          W T+I+   Q  
Sbjct: 174 SDARKLFDFVGFKDVALWNAMVAGYVKVGELKSARKVFNEMPQRNVISWTTLIAGYAQTN 233

Query: 399 YDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHH 458
              +AI LF  M    V+PD+I +  +L+AC   G ++ G  +  +     G+      +
Sbjct: 234 RPHEAIELFRKMQLEEVEPDEIAMLAVLSACADLGALELG-EWIHNYIEKHGLCRIVSLY 292

Query: 459 ACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLI 514
             LI++ A++G   + +   E M  +     W+ +     +HG   +G + +D  +
Sbjct: 293 NALIDMYAKSGNIRRALEVFENMK-QKSVITWSTVIAALALHG---LGGEAIDMFL 344



 Score = 48.9 bits (115), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 50/208 (24%), Positives = 92/208 (44%), Gaps = 14/208 (6%)

Query: 320 FSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTD 379
           F+S L  C   +   H  Q+HGF++      + + +S  ID    C  L      F +  
Sbjct: 27  FTSLLSNCRHHL---HLYQIHGFMLHRALDQDNLFLSQFID---ACTSLGLSSYAFSIFS 80

Query: 380 NKENS--MLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQE 437
           NK +    L+NT I AL++      AI L+  +    ++PD  ++  +L A      V+ 
Sbjct: 81  NKTHPDLRLYNTAIKALSKTSSPINAIWLYTRIRIDGLRPDSYSIPSVLKAVVKLSAVEV 140

Query: 438 GL-TYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNAL-HG 495
           G   + ++++  L +  N      LI++ +  G         + + ++ D  LWNA+  G
Sbjct: 141 GRQIHTQTVSSALDMDVNVA--TSLIQMYSSCGFVSDARKLFDFVGFK-DVALWNAMVAG 197

Query: 496 VCRIHGNIDMGRKVVDQLIDQNPQSSAT 523
             ++ G +   RKV +++  +N  S  T
Sbjct: 198 YVKV-GELKSARKVFNEMPQRNVISWTT 224


>gi|359475985|ref|XP_002281998.2| PREDICTED: pentatricopeptide repeat-containing protein At4g33170
            [Vitis vinifera]
          Length = 1580

 Score =  296 bits (759), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 165/560 (29%), Positives = 284/560 (50%), Gaps = 66/560 (11%)

Query: 40   LDLLAQRGIRLPAETLAFILQQCAE-SKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMY 98
            +DLL   G++    TLA +L+ C+     L + +++H+H  L       +F++  LI +Y
Sbjct: 994  IDLL-HEGLKPDHFTLASVLRACSSLIDGLNISRQIHVH-ALKTGNIADSFVATTLIDVY 1051

Query: 99   FKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMII 158
             K G                                M+ A  LF N  + D+  WN M+ 
Sbjct: 1052 SKSGK-------------------------------MEEAEFLFQNKDDLDLACWNAMMF 1080

Query: 159  GYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLS 218
            GY      ++ L+ + ++ +     ++ + A     C  L  L   +Q+H   +  GF S
Sbjct: 1081 GYIIGNDGKKALELFSLIHKSGEKSDQITLATAAKACGCLVLLDQGKQIHAHAIKAGFDS 1140

Query: 219  NVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMP 278
            ++ ++S I+D Y KCG                               DM +A  +FN + 
Sbjct: 1141 DLHVNSGILDMYIKCG-------------------------------DMVNAGIVFNYIS 1169

Query: 279  EKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQ 338
              + V+WT++I+G   NG   +AL ++ RM   R+ P+++TF++ + A + + +L+ G+Q
Sbjct: 1170 APDDVAWTSMISGCVDNGNEDQALRIYHRMRQSRVMPDEYTFATLIKASSCVTALEQGRQ 1229

Query: 339  VHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHG 398
            +H  +I+ +  S+  V +SL+DMY+KCG + D  ++F    N  N  LWN M+  L QHG
Sbjct: 1230 LHANVIKLDCVSDPFVGTSLVDMYAKCGNIEDAYRLFKKM-NVRNIALWNAMLVGLAQHG 1288

Query: 399  YDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHH 458
              E+A+ LF  M    ++PD+++   IL+AC+H+GL  E   Y  SM +D GI P  EH+
Sbjct: 1289 NAEEAVNLFKSMKSHGIEPDRVSFIGILSACSHAGLTSEAYEYLHSMPNDYGIEPEIEHY 1348

Query: 459  ACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNP 518
            +CL++ L +AG   +    +E MP++  + +  AL G CRI G+++ G++V  +L    P
Sbjct: 1349 SCLVDALGRAGLVQEADKVIETMPFKASASINRALLGACRIQGDVETGKRVAARLFALEP 1408

Query: 519  QSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHP 578
              SA + LLS+IY+A  +   V   R+++  +  KK+   SWI+++N +H F V D  HP
Sbjct: 1409 FDSAAYVLLSNIYAAANRWDDVTDARKMMKRKNVKKDPGFSWIDVKNMLHLFVVDDRSHP 1468

Query: 579  MRDVLYSVLEQLAGQMGEDA 598
              D++Y  +E++   + ED 
Sbjct: 1469 QADIIYDKVEEMMKTIREDG 1488



 Score =  183 bits (464), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 115/362 (31%), Positives = 175/362 (48%), Gaps = 53/362 (14%)

Query: 120  FSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKS-----GAVEEGLKFYK 174
            F  NN+L+ Y+  G +  AR +FD   ERD+V+WN ++  YA S     G  +EGL  ++
Sbjct: 657  FLSNNLLTMYSKCGSLSSARQVFDTTPERDLVTWNAILGAYAASVDSNDGNAQEGLHLFR 716

Query: 175  VLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCG 234
            +LR    S    + A +L +C+    L     VHG  +  G   +V +S ++V+ Y+KCG
Sbjct: 717  LLRASLGSTTRMTLAPVLKLCLNSGCLWAAEGVHGYAIKIGLEWDVFVSGALVNIYSKCG 776

Query: 235  ELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNE------------------ 276
             + DAR LFD    RDV+ W  M+ GY +LG  + A +LF+E                  
Sbjct: 777  RMRDARLLFDWMRERDVVLWNMMLKGYVQLGLEKEAFQLFSEFHRSGLRPDEFSVQLILN 836

Query: 277  -------------------------MPEKNP--VSWTTLIAGYTRNGLGQKALELFTRMM 309
                                     + + NP    W   ++     G    A+E F  M 
Sbjct: 837  GVSEVNWDEGKWLADQVQAYAAKLSLSDDNPDVFCWNKKLSECLWAGDNWGAIECFVNMN 896

Query: 310  ILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLN 369
             L I  +  T    L A A    L+ GKQVHG  +++   S+  V +SL++MYSK GC  
Sbjct: 897  GLNIDYDAVTLLVVLAAVAGTDDLELGKQVHGIAVKSGLDSDVSVANSLVNMYSKMGCAY 956

Query: 370  DGRQVFDLTDNKENSML-WNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNA 428
              R+VF+  D K   ++ WN+MIS+  Q   +E+++ LF D++   +KPD  TLA +L A
Sbjct: 957  FAREVFN--DMKHLDLISWNSMISSCAQSSLEEESVNLFIDLLHEGLKPDHFTLASVLRA 1014

Query: 429  CT 430
            C+
Sbjct: 1015 CS 1016



 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 110/466 (23%), Positives = 206/466 (44%), Gaps = 92/466 (19%)

Query: 31   GQLSEAISSLDLLAQRGIRL-----------PAETLAFILQQCAESKSLKLGKRVHLH-L 78
            G  + ++ S D  AQ G+ L              TLA +L+ C  S  L   + VH + +
Sbjct: 695  GAYAASVDSNDGNAQEGLHLFRLLRASLGSTTRMTLAPVLKLCLNSGCLWAAEGVHGYAI 754

Query: 79   KLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHA 138
            K+        F+S  L+++Y KCG   DAR +FD +  +++  +N ML GY  LG+ K A
Sbjct: 755  KIGLEWD--VFVSGALVNIYSKCGRMRDARLLFDWMRERDVVLWNMMLKGYVQLGLEKEA 812

Query: 139  RNLFDN------------------------------MAER---------------DVVSW 153
              LF                                +A++               DV  W
Sbjct: 813  FQLFSEFHRSGLRPDEFSVQLILNGVSEVNWDEGKWLADQVQAYAAKLSLSDDNPDVFCW 872

Query: 154  NTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLV 213
            N  +     +G     ++ +  +   +I  +  +   +L      ++L+L +QVHG  + 
Sbjct: 873  NKKLSECLWAGDNWGAIECFVNMNGLNIDYDAVTLLVVLAAVAGTDDLELGKQVHGIAVK 932

Query: 214  TGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKL 273
            +G  S+V +++S+V+ Y+K                               +G    A ++
Sbjct: 933  SGLDSDVSVANSLVNMYSK-------------------------------MGCAYFAREV 961

Query: 274  FNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIV-S 332
            FN+M   + +SW ++I+   ++ L ++++ LF  ++   ++P+  T +S L AC+S++  
Sbjct: 962  FNDMKHLDLISWNSMISSCAQSSLEEESVNLFIDLLHEGLKPDHFTLASVLRACSSLIDG 1021

Query: 333  LKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMIS 392
            L   +Q+H   ++T   +++ V ++LID+YSK G + +   +F   D+ + +  WN M+ 
Sbjct: 1022 LNISRQIHVHALKTGNIADSFVATTLIDVYSKSGKMEEAEFLFQNKDDLDLA-CWNAMMF 1080

Query: 393  ALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEG 438
                    ++A+ LF  + +S  K D+ITLA    AC    L+ +G
Sbjct: 1081 GYIIGNDGKKALELFSLIHKSGEKSDQITLATAAKACGCLVLLDQG 1126



 Score =  115 bits (289), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 65/240 (27%), Positives = 118/240 (49%), Gaps = 27/240 (11%)

Query: 191 ILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARD 250
           +L   +    L L +  H +++V+G   +  +S++++  Y+KCG LS AR++FD T  RD
Sbjct: 627 LLRTAISTHNLLLGKCTHARIVVSGSAGDHFLSNNLLTMYSKCGSLSSARQVFDTTPERD 686

Query: 251 VLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMI 310
           ++TW  ++  YA   D                          + +G  Q+ L LF  +  
Sbjct: 687 LVTWNAILGAYAASVD--------------------------SNDGNAQEGLHLFRLLRA 720

Query: 311 LRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLND 370
                 + T +  L  C +   L   + VHG+ I+     +  V  +L+++YSKCG + D
Sbjct: 721 SLGSTTRMTLAPVLKLCLNSGCLWAAEGVHGYAIKIGLEWDVFVSGALVNIYSKCGRMRD 780

Query: 371 GRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACT 430
            R +FD    ++  +LWN M+    Q G +++A +LF +  RS ++PD+ ++ +ILN  +
Sbjct: 781 ARLLFDWMRERD-VVLWNMMLKGYVQLGLEKEAFQLFSEFHRSGLRPDEFSVQLILNGVS 839



 Score =  108 bits (271), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 77/302 (25%), Positives = 133/302 (44%), Gaps = 36/302 (11%)

Query: 11   NRKNLPNNCLIQSFLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKL 70
            N+ +L   C        I      +A+    L+ + G +    TLA   + C     L  
Sbjct: 1066 NKDDLDLACWNAMMFGYIIGNDGKKALELFSLIHKSGEKSDQITLATAAKACGCLVLLDQ 1125

Query: 71   GKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYA 130
            GK++H H  +         +++ ++ MY KCG  V+A  VF+ I                
Sbjct: 1126 GKQIHAH-AIKAGFDSDLHVNSGILDMYIKCGDMVNAGIVFNYISAP------------- 1171

Query: 131  NLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAG 190
                              D V+W +MI G   +G  ++ L+ Y  +R+  +  +E++FA 
Sbjct: 1172 ------------------DDVAWTSMISGCVDNGNEDQALRIYHRMRQSRVMPDEYTFAT 1213

Query: 191  ILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARD 250
            ++     +  L+  RQ+H  V+    +S+  + +S+VD YAKCG + DA RLF + + R+
Sbjct: 1214 LIKASSCVTALEQGRQLHANVIKLDCVSDPFVGTSLVDMYAKCGNIEDAYRLFKKMNVRN 1273

Query: 251  VLTWTTMVSGYAKLGDMESASKLFNEMP----EKNPVSWTTLIAGYTRNGLGQKALELFT 306
            +  W  M+ G A+ G+ E A  LF  M     E + VS+  +++  +  GL  +A E   
Sbjct: 1274 IALWNAMLVGLAQHGNAEEAVNLFKSMKSHGIEPDRVSFIGILSACSHAGLTSEAYEYLH 1333

Query: 307  RM 308
             M
Sbjct: 1334 SM 1335



 Score = 53.1 bits (126), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 31/103 (30%), Positives = 54/103 (52%), Gaps = 6/103 (5%)

Query: 336 GKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISAL- 394
           GK  H  ++ +    +  + ++L+ MYSKCG L+  RQVFD T  ++  + WN ++ A  
Sbjct: 640 GKCTHARIVVSGSAGDHFLSNNLLTMYSKCGSLSSARQVFDTTPERD-LVTWNAILGAYA 698

Query: 395 ----TQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSG 433
               +  G  ++ + LF  +  S     ++TLA +L  C +SG
Sbjct: 699 ASVDSNDGNAQEGLHLFRLLRASLGSTTRMTLAPVLKLCLNSG 741


>gi|224134663|ref|XP_002327460.1| predicted protein [Populus trichocarpa]
 gi|222836014|gb|EEE74435.1| predicted protein [Populus trichocarpa]
          Length = 540

 Score =  296 bits (759), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 154/465 (33%), Positives = 256/465 (55%), Gaps = 5/465 (1%)

Query: 137 HARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICV 196
           +A  LF  +  +    WNTM+  + +          YK +   +   N F+F+ ++  C+
Sbjct: 64  YAERLFLCLQNKSTFIWNTMMQAFVEKNEAVRAFSLYKHMLESNYLPNNFTFSFVIRACI 123

Query: 197 KLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTT 256
            +  L++    HGQV+  G+ S   + + ++  YA CG +  AR +FD +  RDV+TWT 
Sbjct: 124 DVFNLQMGLCFHGQVVKFGWESYDFVQNGLIHLYANCGFMDLARNMFDMSIKRDVVTWTC 183

Query: 257 MVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPN 316
           ++SGY   G +  A +LF+ MPEKNPVSW  LIAGY R G  ++ALE+F  M +   R N
Sbjct: 184 LISGYLNSGQVLIARELFDRMPEKNPVSWGALIAGYVRIGFFKEALEVFYDMQVSGFRLN 243

Query: 317 QHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFD 376
           + +    L ACA + +L  G+ +H ++ R +   + ++ ++LIDMY+KCGC+     VFD
Sbjct: 244 RASIVGALTACAFLGALDQGRWIHAYVKRHHMSLDRMLGTALIDMYAKCGCIEMACSVFD 303

Query: 377 LTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQ 436
             D+++    +  +IS L  H   E AI LF+ M    V P+++T   +LNAC+  G+V 
Sbjct: 304 EMDDRD-VYAFTCLISGLANHDKSEAAIDLFNRMQDEGVVPNEVTFVCVLNACSRMGMVD 362

Query: 437 EGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGV 496
           EGL  FESM++   I P  +H+ CL++LL +AG  ++    + +MP + DSY   AL   
Sbjct: 363 EGLRIFESMSNRYVIEPQIQHYGCLVDLLGRAGKIEEAKQVVREMPLQPDSYTLGALLDA 422

Query: 497 CRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQ 556
           CR+HG++ +G ++VD L+ +       H LLS++Y++  K     K+R+ + ++  +K  
Sbjct: 423 CRVHGDVQLGEEMVDSLVQRCLDHGGVHVLLSNMYASADKWEDASKIRKKMEDKNIRKLP 482

Query: 557 AISWIEIENKVHAFSVSDSLHPMRD----VLYSVLEQLAGQMGED 597
             S IE+   V  F   D  + + +    +L+ + +QL     +D
Sbjct: 483 GCSSIEVNGTVCEFVTGDRSYALEEDIMFLLFGIDKQLKSLFLDD 527



 Score =  139 bits (349), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 115/437 (26%), Positives = 189/437 (43%), Gaps = 69/437 (15%)

Query: 11  NRKNLPNNCLIQSFLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKL 70
           N+     N ++Q+F   + K +   A S    + +        T +F+++ C +  +L++
Sbjct: 74  NKSTFIWNTMMQAF---VEKNEAVRAFSLYKHMLESNYLPNNFTFSFVIRACIDVFNLQM 130

Query: 71  GKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYA 130
           G   H  +     ++   F+ N LI +Y  CG    AR +FD    +++ ++  ++SGY 
Sbjct: 131 GLCFHGQVVKFGWES-YDFVQNGLIHLYANCGFMDLARNMFDMSIKRDVVTWTCLISGYL 189

Query: 131 NLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAG 190
           N G +  AR LFD M E++ VSW  +I GY + G  +E L+ +  ++      N  S  G
Sbjct: 190 NSGQVLIARELFDRMPEKNPVSWGALIAGYVRIGFFKEALEVFYDMQVSGFRLNRASIVG 249

Query: 191 ILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARD 250
            LT C  L  L   R +H  V       + ++ ++++D YAKCG +  A  +FDE D RD
Sbjct: 250 ALTACAFLGALDQGRWIHAYVKRHHMSLDRMLGTALIDMYAKCGCIEMACSVFDEMDDRD 309

Query: 251 VLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMI 310
           V  +T ++SG A     E+A  LFN M ++  V                           
Sbjct: 310 VYAFTCLISGLANHDKSEAAIDLFNRMQDEGVV--------------------------- 342

Query: 311 LRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLND 370
               PN+ TF   L AC+ +  +  G ++   +      SN  V+   I  Y   GCL D
Sbjct: 343 ----PNEVTFVCVLNACSRMGMVDEGLRIFESM------SNRYVIEPQIQHY---GCLVD 389

Query: 371 GRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACT 430
                                  L + G  E+A ++  +M    ++PD  TL  +L+AC 
Sbjct: 390 ----------------------LLGRAGKIEEAKQVVREM---PLQPDSYTLGALLDACR 424

Query: 431 HSGLVQEGLTYFESMTH 447
             G VQ G    +S+  
Sbjct: 425 VHGDVQLGEEMVDSLVQ 441


>gi|297829702|ref|XP_002882733.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297328573|gb|EFH58992.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 620

 Score =  296 bits (758), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 172/573 (30%), Positives = 283/573 (49%), Gaps = 62/573 (10%)

Query: 33  LSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSN 92
            +E+IS    + + G    A +  FIL+ CA       G+++H H+ +        F+  
Sbjct: 31  FTESISLYRSMLRSGSSPDAFSFPFILKSCASLSLPVSGQQLHCHV-IRGGCEAEPFVLT 89

Query: 93  HLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVS 152
            LISMY KCG   DARKVF++ P                     H+  L         V 
Sbjct: 90  ALISMYCKCGLVEDARKVFEENP---------------------HSSQLG--------VC 120

Query: 153 WNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVL 212
           +N +I GY  +  V +    ++ ++   +S +  +  G++ +C   E L L R +HG+ +
Sbjct: 121 YNALISGYTANSKVSDAAFMFRRMKETGVSVDSVTILGLVPLCTVPEYLWLGRSLHGECV 180

Query: 213 VTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASK 272
             G  S V + +S +  Y KCG +                               ES  +
Sbjct: 181 KGGTYSEVAVLNSFITMYMKCGSV-------------------------------ESGRR 209

Query: 273 LFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVS 332
           LF+EMP K  ++W  +I+GY++NGL    LELF +M    + P+  T  S L +CA + +
Sbjct: 210 LFDEMPVKGLITWNAVISGYSQNGLAYDVLELFEQMKSSGVCPDPFTLVSVLSSCAHLGA 269

Query: 333 LKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMIS 392
            K G++V   +    F  N  + ++LI MY++CG L   R VFD+   K + + W  MI 
Sbjct: 270 KKIGQEVGELVEANGFAPNVFLSNALISMYARCGNLAKARAVFDIMPVK-SLVSWTAMIG 328

Query: 393 ALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGII 452
               HG  E  + LF DM++  ++PD     ++L+AC+HSGL  +GL  F +M  +  + 
Sbjct: 329 CYGMHGMGETGLTLFDDMIKRGIRPDGAVFVMVLSACSHSGLTDKGLELFRAMKREYKLE 388

Query: 453 PNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQ 512
           P  EH++CL++LL +AG  D+ M  ++ MP E D  +W AL G C+IH N+DM      +
Sbjct: 389 PGPEHYSCLVDLLGRAGRLDEAMEFIDSMPVEPDGAVWGALLGACKIHKNVDMAELAFAK 448

Query: 513 LIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSV 572
           +I+  P +   + L+S+IYS       + ++R ++ ER F+K+   S++E + KVH F  
Sbjct: 449 VIEFEPMNIGYYVLMSNIYSDSKNQEGIWRIRVMMRERAFRKKPGYSYVEHKGKVHLFLA 508

Query: 573 SDSLHPMRDVLYSVLEQLAGQMGEDAPSLDADR 605
            D  H   + ++ +L++L   + E A ++D DR
Sbjct: 509 GDRSHEQTEEVHRMLDELETSVMELAGNMDCDR 541



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 106/406 (26%), Positives = 170/406 (41%), Gaps = 36/406 (8%)

Query: 152 SWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQV 211
           SWN  +   A      E +  Y+ + R   S + FSF  IL  C  L      +Q+H  V
Sbjct: 17  SWNVRLRELAYQSLFTESISLYRSMLRSGSSPDAFSFPFILKSCASLSLPVSGQQLHCHV 76

Query: 212 LVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESAS 271
           +  G  +   + ++++  Y KCG + DAR++F+E                          
Sbjct: 77  IRGGCEAEPFVLTALISMYCKCGLVEDARKVFEE-------------------------- 110

Query: 272 KLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIV 331
              N    +  V +  LI+GYT N     A  +F RM    +  +  T    +  C    
Sbjct: 111 ---NPHSSQLGVCYNALISGYTANSKVSDAAFMFRRMKETGVSVDSVTILGLVPLCTVPE 167

Query: 332 SLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMI 391
            L  G+ +HG  ++    S   V++S I MY KCG +  GR++FD    K   + WN +I
Sbjct: 168 YLWLGRSLHGECVKGGTYSEVAVLNSFITMYMKCGSVESGRRLFDEMPVK-GLITWNAVI 226

Query: 392 SALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGI 451
           S  +Q+G     + LF  M  S V PD  TL  +L++C H G  + G    E +  + G 
Sbjct: 227 SGYSQNGLAYDVLELFEQMKSSGVCPDPFTLVSVLSSCAHLGAKKIGQEVGELVEAN-GF 285

Query: 452 IPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVD 511
            PN      LI + A+ G   +     + MP +     W A+ G   +HG  + G  + D
Sbjct: 286 APNVFLSNALISMYARCGNLAKARAVFDIMPVK-SLVSWTAMIGCYGMHGMGETGLTLFD 344

Query: 512 QLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLIN--ERQFKKE 555
            +I +  +      +   + SA     L +K  +L    +R++K E
Sbjct: 345 DMIKRGIRPDGA--VFVMVLSACSHSGLTDKGLELFRAMKREYKLE 388



 Score =  119 bits (297), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 111/520 (21%), Positives = 206/520 (39%), Gaps = 82/520 (15%)

Query: 18  NCLIQSFLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLH 77
           N LI  +    +  ++S+A      + + G+ + + T+  ++  C   + L LG+ +H  
Sbjct: 122 NALISGY---TANSKVSDAAFMFRRMKETGVSVDSVTILGLVPLCTVPEYLWLGRSLHGE 178

Query: 78  LKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKH 137
                  +    L N  I+MY KCGS    R++FD++PVK L ++N ++SGY+  G+   
Sbjct: 179 CVKGGTYSEVAVL-NSFITMYMKCGSVESGRRLFDEMPVKGLITWNAVISGYSQNGLAYD 237

Query: 138 ARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVK 197
              LF+ M    V                                 + F+   +L+ C  
Sbjct: 238 VLELFEQMKSSGVCP-------------------------------DPFTLVSVLSSCAH 266

Query: 198 LEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTM 257
           L   K+ ++V   V   GF  NV +S++++  YA+CG L+ AR +FD    + +++WT M
Sbjct: 267 LGAKKIGQEVGELVEANGFAPNVFLSNALISMYARCGNLAKARAVFDIMPVKSLVSWTAM 326

Query: 258 VSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQ 317
           +  Y                                 +G+G+  L LF  M+   IRP+ 
Sbjct: 327 IGCYGM-------------------------------HGMGETGLTLFDDMIKRGIRPDG 355

Query: 318 HTFSSCLCACASIVSLKHGKQVHGFLIRT-NFRSNTIVMSSLIDMYSKCGCLNDGRQVFD 376
             F   L AC+       G ++   + R           S L+D+  + G L++  +  D
Sbjct: 356 AVFVMVLSACSHSGLTDKGLELFRAMKREYKLEPGPEHYSCLVDLLGRAGRLDEAMEFID 415

Query: 377 LTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQ 436
               + +  +W  ++ A   H   + A   F  ++    +P  I   V+++        Q
Sbjct: 416 SMPVEPDGAVWGALLGACKIHKNVDMAELAFAKVIE--FEPMNIGYYVLMSNIYSDSKNQ 473

Query: 437 EGLTYFESMTHDLGI--IPNQEH--HACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNA 492
           EG+     M  +      P   +  H   + L      S +   ++ +M  E ++     
Sbjct: 474 EGIWRIRVMMRERAFRKKPGYSYVEHKGKVHLFLAGDRSHEQTEEVHRMLDELET----- 528

Query: 493 LHGVCRIHGNIDM--GRKVVDQLIDQNPQSSATHGLLSSI 530
              V  + GN+D   G +V     + + + +   G+L+SI
Sbjct: 529 --SVMELAGNMDCDRGEEVSSTTREHSERLAIAFGILNSI 566


>gi|356518183|ref|XP_003527761.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33170-like
            [Glycine max]
          Length = 1582

 Score =  296 bits (758), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 174/566 (30%), Positives = 288/566 (50%), Gaps = 66/566 (11%)

Query: 40   LDLLAQRGIRLPAE-TLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMY 98
            +DLL  RG  LP + T+A +L+ C+      LG   HL  ++            H  +M 
Sbjct: 996  VDLL--RGGLLPDQFTVASVLRACS-----SLGGGCHLATQI------------HACAM- 1035

Query: 99   FKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMII 158
             K G  +D+            F    ++  Y+  G M+ A  LF N    D+ SWN M+ 
Sbjct: 1036 -KAGVVLDS------------FVSTTLIDVYSKSGKMEEAEFLFVNQDGFDLASWNAMMH 1082

Query: 159  GYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLS 218
            GY  SG   + L+ Y +++      N+ + A        L  LK  +Q+   V+  GF  
Sbjct: 1083 GYIVSGDFPKALRLYILMQESGERANQITLANAAKAAGGLVGLKQGKQIQAVVVKRGFNL 1142

Query: 219  NVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMP 278
            ++ + S ++D Y KCGE                               MESA ++FNE+P
Sbjct: 1143 DLFVISGVLDMYLKCGE-------------------------------MESARRIFNEIP 1171

Query: 279  EKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQ 338
              + V+WTT+I+G   NG  + AL  +  M + +++P+++TF++ + AC+ + +L+ G+Q
Sbjct: 1172 SPDDVAWTTMISGCVENGQEEHALFTYHHMRLSKVQPDEYTFATLVKACSLLTALEQGRQ 1231

Query: 339  VHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHG 398
            +H   ++ N   +  VM+SL+DMY+KCG + D R +F  T N      WN MI  L QHG
Sbjct: 1232 IHANTVKLNCAFDPFVMTSLVDMYAKCGNIEDARGLFKRT-NTSRIASWNAMIVGLAQHG 1290

Query: 399  YDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHH 458
              E+A++ F +M    V PD++T   +L+AC+HSGLV E    F SM    GI P  EH+
Sbjct: 1291 NAEEALQFFEEMKSRGVTPDRVTFIGVLSACSHSGLVSEAYENFYSMQKIYGIEPEIEHY 1350

Query: 459  ACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNP 518
            +CL++ L++AG   +    +  MP+E  + ++  L   CR+  + + G++V ++L+   P
Sbjct: 1351 SCLVDALSRAGRIREAEKVISSMPFEASASMYRTLLNACRVQVDRETGKRVAEKLLALEP 1410

Query: 519  QSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHP 578
              SA + LLS++Y+A  +   V   R ++ +   KK+   SW++++NKVH F   D  H 
Sbjct: 1411 SDSAAYVLLSNVYAAANQWENVASARNMMRKANVKKDPGFSWVDLKNKVHLFVAGDRSHE 1470

Query: 579  MRDVLYSVLEQLAGQMGEDAPSLDAD 604
              DV+Y+ +E +  ++ E+    D D
Sbjct: 1471 ETDVIYNKVEYIMKRIREEGYLPDTD 1496



 Score =  172 bits (436), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 129/499 (25%), Positives = 216/499 (43%), Gaps = 92/499 (18%)

Query: 58   ILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVK 117
            IL+    +  L LGKR H  + LT    P  FL+N+LI+MY KCGS   ARK+FD  P  
Sbjct: 632  ILRHAIAASDLPLGKRAHARI-LTSGHHPDRFLTNNLITMYSKCGSLSSARKLFDTTPDT 690

Query: 118  NLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLR 177
            +                             RD+V+WN ++  +A      +G   +++LR
Sbjct: 691  S-----------------------------RDLVTWNAILSAHADKA--RDGFHLFRLLR 719

Query: 178  RFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELS 237
            R  +S    + A +  +C+          +HG  +  G   +V ++ ++V+ YAK G + 
Sbjct: 720  RSFVSATRHTLAPVFKMCLLSASPSAAESLHGYAVKIGLQWDVFVAGALVNIYAKFGRIR 779

Query: 238  DARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEM------PE------------ 279
            +AR LFD    RDV+ W  M+  Y   G    A  LF+E       P+            
Sbjct: 780  EARVLFDGMGLRDVVLWNVMMKAYVDTGLEYEALLLFSEFNRTGLRPDDVTLCTLARVVK 839

Query: 280  -----------------------------KNPVSWTTLIAGYTRNGLGQKALELFTRMMI 310
                                          + ++W   ++ + + G   +A++ F  M+ 
Sbjct: 840  SKQNVLEWQLKQLKAYGTKLFMYDDDDDGSDVIAWNKTLSWFLQRGETWEAVDCFVDMIN 899

Query: 311  LRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLND 370
             R+  +  TF   L   A +  L+ GKQ+HG ++R+       V + LI+MY K G ++ 
Sbjct: 900  SRVACDGLTFVVMLSVVAGLNCLELGKQIHGIVVRSGLDQVVSVGNCLINMYVKTGSVSR 959

Query: 371  GRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACT 430
             R VF    N+ + + WNTMIS     G +E ++ +F D++R  + PD+ T+A +L AC+
Sbjct: 960  ARTVF-WQMNEVDLVSWNTMISGCALSGLEECSVGMFVDLLRGGLLPDQFTVASVLRACS 1018

Query: 431  HSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSY-- 488
              G      T   +     G++ +      LI++ +++G     M + E +    D +  
Sbjct: 1019 SLGGGCHLATQIHACAMKAGVVLDSFVSTTLIDVYSKSG----KMEEAEFLFVNQDGFDL 1074

Query: 489  -LWNALHGVCRIHGNIDMG 506
              WNA+     +HG I  G
Sbjct: 1075 ASWNAM-----MHGYIVSG 1088



 Score =  158 bits (399), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 94/317 (29%), Positives = 156/317 (49%), Gaps = 33/317 (10%)

Query: 123  NNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSIS 182
            N +++ Y   G +  AR +F  M E D+VSWNTMI G A SG  E  +  +  L R  + 
Sbjct: 945  NCLINMYVKTGSVSRARTVFWQMNEVDLVSWNTMISGCALSGLEECSVGMFVDLLRGGLL 1004

Query: 183  CNEFSFAGILTICVKL-EELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARR 241
             ++F+ A +L  C  L     L  Q+H   +  G + +  +S++++D Y+K G++ +A  
Sbjct: 1005 PDQFTVASVLRACSSLGGGCHLATQIHACAMKAGVVLDSFVSTTLIDVYSKSGKMEEAEF 1064

Query: 242  LFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKA 301
            LF   D  D+ +W  M+ GY   GD                                 KA
Sbjct: 1065 LFVNQDGFDLASWNAMMHGYIVSGDFP-------------------------------KA 1093

Query: 302  LELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDM 361
            L L+  M     R NQ T ++   A   +V LK GKQ+   +++  F  +  V+S ++DM
Sbjct: 1094 LRLYILMQESGERANQITLANAAKAAGGLVGLKQGKQIQAVVVKRGFNLDLFVISGVLDM 1153

Query: 362  YSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKIT 421
            Y KCG +   R++F+   + ++ + W TMIS   ++G +E A+  +H M  S V+PD+ T
Sbjct: 1154 YLKCGEMESARRIFNEIPSPDD-VAWTTMISGCVENGQEEHALFTYHHMRLSKVQPDEYT 1212

Query: 422  LAVILNACTHSGLVQEG 438
             A ++ AC+    +++G
Sbjct: 1213 FATLVKACSLLTALEQG 1229



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 79/317 (24%), Positives = 141/317 (44%), Gaps = 37/317 (11%)

Query: 28   ISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPT 87
            I  G   +A+    L+ + G R    TLA   +       LK GK++   + + +     
Sbjct: 1085 IVSGDFPKALRLYILMQESGERANQITLANAAKAAGGLVGLKQGKQIQA-VVVKRGFNLD 1143

Query: 88   TFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAE 147
             F+ + ++ MY KCG    AR++F++IP  +  ++  M+SG    G  +HA         
Sbjct: 1144 LFVISGVLDMYLKCGEMESARRIFNEIPSPDDVAWTTMISGCVENGQEEHA--------- 1194

Query: 148  RDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQV 207
                                  L  Y  +R   +  +E++FA ++  C  L  L+  RQ+
Sbjct: 1195 ----------------------LFTYHHMRLSKVQPDEYTFATLVKACSLLTALEQGRQI 1232

Query: 208  HGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDM 267
            H   +      +  + +S+VD YAKCG + DAR LF  T+   + +W  M+ G A+ G+ 
Sbjct: 1233 HANTVKLNCAFDPFVMTSLVDMYAKCGNIEDARGLFKRTNTSRIASWNAMIVGLAQHGNA 1292

Query: 268  ESASKLFNEMPEK----NPVSWTTLIAGYTRNGLGQKALELFTRMM-ILRIRPNQHTFSS 322
            E A + F EM  +    + V++  +++  + +GL  +A E F  M  I  I P    +S 
Sbjct: 1293 EEALQFFEEMKSRGVTPDRVTFIGVLSACSHSGLVSEAYENFYSMQKIYGIEPEIEHYSC 1352

Query: 323  CLCACASIVSLKHGKQV 339
             + A +    ++  ++V
Sbjct: 1353 LVDALSRAGRIREAEKV 1369


>gi|224141427|ref|XP_002324074.1| predicted protein [Populus trichocarpa]
 gi|222867076|gb|EEF04207.1| predicted protein [Populus trichocarpa]
          Length = 636

 Score =  296 bits (758), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 164/548 (29%), Positives = 287/548 (52%), Gaps = 41/548 (7%)

Query: 50  LPAETLAFILQQCAESKSLKLGKRVHLHLKLT--QRKTPTTFLSNHLISMYFKCGSDVDA 107
           LPA   + +L+ CA + SL  GK++H  +  +     +P TFL N L  +Y  CG     
Sbjct: 14  LPARFRS-LLRSCARNSSLSTGKKLHAVILTSGLASSSPNTFLLNALHHLYASCG----- 67

Query: 108 RKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNM--AERDVVSWNTMIIGYAKSGA 165
                                     +   AR+LF  +  + +DV  W T++    + G 
Sbjct: 68  --------------------------VTSSARHLFYQIPRSHKDVTDWTTLLTSLVQHGT 101

Query: 166 -VEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISS 224
              EG  F+K +R+  +  ++ +   +  +C ++E+L + RQ  G ++  G    V + +
Sbjct: 102 KPSEGFFFFKEMRKEGVVLDDVAMISVFVLCTRVEDLGMGRQAQGCLVKMGLGLGVKVCN 161

Query: 225 SIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVS 284
           +I++ Y KCG + + RR+F E + R+V++W+T++ G  K   +E+   +F+EMPE+N V 
Sbjct: 162 AIMNMYVKCGLVEEVRRVFCEMNERNVVSWSTLLEGVVKWEGVENGRVVFDEMPERNEVG 221

Query: 285 WTTLIAGYTRNGLGQKALELFTRMMI-LRIRPNQHTFSSCLCACASIVSLKHGKQVHGFL 343
           WT +IAGY  NG  ++   L   M++  R+  N  T SS L ACA    +  G+ VH + 
Sbjct: 222 WTIMIAGYVGNGFSREGFLLLDEMVLRFRLGLNFVTLSSILSACAQSGDVLMGRWVHVYA 281

Query: 344 IRTNFRS-NTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQ 402
           ++   R  + +V ++L+DMY+KCG ++   +VF     K N + WN M+  L  HG  + 
Sbjct: 282 LKGMGREMHIMVGTALVDMYAKCGPIDMAFKVFKYLP-KRNVVAWNAMLGGLAMHGRGKF 340

Query: 403 AIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLI 462
            + +F  M+  + KPD +T   +L+AC+HSGLV +G  YF S+  + G  P  EH+AC++
Sbjct: 341 VLDIFPKMIEEA-KPDDLTFMAVLSACSHSGLVDQGYHYFRSLESEYGTTPKIEHYACMV 399

Query: 463 ELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSA 522
           ++L +AG  ++ +  ++KMP   +  +  +L G C  HG + +G +++ +LI  +  ++ 
Sbjct: 400 DILGRAGHLEEAVMLIKKMPMCPNEVVLGSLLGSCNAHGKLQLGERILQELIQMDGHNTE 459

Query: 523 THGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDV 582
            H LLS++Y   GK      +RQ++  +  +K   +S I +   +H FS  D  HP+   
Sbjct: 460 YHVLLSNMYVLEGKQDKANSLRQILKSKGIRKVPGVSSIYVGGNIHQFSAGDKSHPLTKE 519

Query: 583 LYSVLEQL 590
           +Y  L  +
Sbjct: 520 IYHALNNM 527



 Score =  115 bits (288), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 105/460 (22%), Positives = 193/460 (41%), Gaps = 90/460 (19%)

Query: 26  SLISKG-QLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKR-----VHLHLK 79
           SL+  G + SE       + + G+ L    +  +   C   + L +G++     V + L 
Sbjct: 95  SLVQHGTKPSEGFFFFKEMRKEGVVLDDVAMISVFVLCTRVEDLGMGRQAQGCLVKMGLG 154

Query: 80  LTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHAR 139
           L  +      + N +++MY KCG   + R+VF ++  +N+ S++ +L G      +++ R
Sbjct: 155 LGVK------VCNAIMNMYVKCGLVEEVRRVFCEMNERNVVSWSTLLEGVVKWEGVENGR 208

Query: 140 NLFDNMAERDVVSWNTMIIGYAKSGAVEEG-LKFYKVLRRFSISCNEFSFAGILTICVKL 198
            +FD M ER+ V W  MI GY  +G   EG L   +++ RF +  N  + + IL+ C + 
Sbjct: 209 VVFDEMPERNEVGWTIMIAGYVGNGFSREGFLLLDEMVLRFRLGLNFVTLSSILSACAQS 268

Query: 199 EELKLTRQVHGQVLV-TGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTM 257
            ++ + R VH   L   G   ++++ +++VD YAKCG +  A ++F     R+V+ W  M
Sbjct: 269 GDVLMGRWVHVYALKGMGREMHIMVGTALVDMYAKCGPIDMAFKVFKYLPKRNVVAWNAM 328

Query: 258 VSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQ 317
           + G A                                +G G+  L++F + MI   +P+ 
Sbjct: 329 LGGLAM-------------------------------HGRGKFVLDIFPK-MIEEAKPDD 356

Query: 318 HTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDL 377
            TF + L AC                                   S  G ++ G   F  
Sbjct: 357 LTFMAVLSAC-----------------------------------SHSGLVDQGYHYFRS 381

Query: 378 TDNKENSML----WNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSG 433
            +++  +      +  M+  L + G+ E+A+ L   M    + P+++ L  +L +C   G
Sbjct: 382 LESEYGTTPKIEHYACMVDILGRAGHLEEAVMLIKKM---PMCPNEVVLGSLLGSCNAHG 438

Query: 434 LVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQ 473
            +Q G    + +    G   N E+H  L  +    G  D+
Sbjct: 439 KLQLGERILQELIQMDG--HNTEYHVLLSNMYVLEGKQDK 476


>gi|224119882|ref|XP_002318186.1| predicted protein [Populus trichocarpa]
 gi|222858859|gb|EEE96406.1| predicted protein [Populus trichocarpa]
          Length = 537

 Score =  296 bits (758), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 151/481 (31%), Positives = 261/481 (54%), Gaps = 2/481 (0%)

Query: 117 KNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVL 176
           K L++        ++  ++ +A+++F+++       +NT+I  +         L F+  +
Sbjct: 56  KFLYTLTTKAKSKSSTSLLHYAKSIFNSIQNPSTFCYNTIIRVHTLLSFPIPALHFFTQM 115

Query: 177 RRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGEL 236
           RR S+  +  SF   L  C +L  +   R +H QVL  GFLS++ + +S++  Y      
Sbjct: 116 RRLSVPLDSHSFPFTLKACAQLGGVFSARCLHCQVLKFGFLSDLYVMNSLIHGYMVSDMS 175

Query: 237 SDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNG 296
           +DA ++FDE+  RDV+++  ++ G+ K GD+  A +LF+ MP ++ VSW T+IAG  +  
Sbjct: 176 NDAYKVFDESPQRDVVSYNVLIDGFVKAGDVVKARELFDLMPVRDSVSWNTIIAGCAKGD 235

Query: 297 LGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMS 356
             ++A+ELF  MM L IRP+     S L ACA +  L+ GK++H ++ R   + +T + +
Sbjct: 236 YCEEAIELFDFMMDLEIRPDNVALVSTLSACAQLGELEKGKKIHDYIERNAMKVDTFLST 295

Query: 357 SLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVK 416
            L+D Y+KCGC++   ++FD + +K N   WN M+  L  HGY E  +  F  M+ + VK
Sbjct: 296 GLVDFYAKCGCVDIALKIFDSSSDK-NLFTWNAMLVGLAMHGYGELLLEYFSRMIEAGVK 354

Query: 417 PDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMN 476
           PD I++  +L  C+HSGLV E    F+ M    G+    +H+ C+ +LL +AG   ++M 
Sbjct: 355 PDGISILGVLVGCSHSGLVDEARKLFDEMESVYGVPREPKHYGCMADLLGRAGLIKKVME 414

Query: 477 QLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGK 536
            ++ MP   D  +W+ L G CRIHG++++  K    L++  P     + +L+++Y+   +
Sbjct: 415 MIKDMPRGGDMSVWSGLLGGCRIHGDVEIAEKAAKHLMELKPDDGGVYSILANVYANAER 474

Query: 537 GRLVEKVRQ-LINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQMG 595
              V  +R+ L + R   K    S I+++   H F   DSLH   D +Y VL  +     
Sbjct: 475 WEDVMNIRRSLSSNRVVTKIAGFSLIQLDGVAHEFIAGDSLHSESDKIYLVLNGIREHQS 534

Query: 596 E 596
           E
Sbjct: 535 E 535



 Score =  132 bits (332), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 86/299 (28%), Positives = 146/299 (48%), Gaps = 8/299 (2%)

Query: 33  LSEAISSLDLLAQ-RGIRLP--AETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTF 89
           LS  I +L    Q R + +P  + +  F L+ CA+   +   + +H  + L        +
Sbjct: 102 LSFPIPALHFFTQMRRLSVPLDSHSFPFTLKACAQLGGVFSARCLHCQV-LKFGFLSDLY 160

Query: 90  LSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERD 149
           + N LI  Y       DA KVFD+ P +++ SYN ++ G+   G +  AR LFD M  RD
Sbjct: 161 VMNSLIHGYMVSDMSNDAYKVFDESPQRDVVSYNVLIDGFVKAGDVVKARELFDLMPVRD 220

Query: 150 VVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHG 209
            VSWNT+I G AK    EE ++ +  +    I  +  +    L+ C +L EL+  +++H 
Sbjct: 221 SVSWNTIIAGCAKGDYCEEAIELFDFMMDLEIRPDNVALVSTLSACAQLGELEKGKKIHD 280

Query: 210 QVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMES 269
            +       +  +S+ +VD YAKCG +  A ++FD +  +++ TW  M+ G A  G  E 
Sbjct: 281 YIERNAMKVDTFLSTGLVDFYAKCGCVDIALKIFDSSSDKNLFTWNAMLVGLAMHGYGEL 340

Query: 270 ASKLFNEMPE----KNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCL 324
             + F+ M E     + +S   ++ G + +GL  +A +LF  M  +   P +     C+
Sbjct: 341 LLEYFSRMIEAGVKPDGISILGVLVGCSHSGLVDEARKLFDEMESVYGVPREPKHYGCM 399


>gi|334185563|ref|NP_188975.3| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75274454|sp|Q9LW63.1|PP251_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g23330
 gi|11994318|dbj|BAB02277.1| unnamed protein product [Arabidopsis thaliana]
 gi|332643232|gb|AEE76753.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 715

 Score =  296 bits (758), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 172/578 (29%), Positives = 301/578 (52%), Gaps = 44/578 (7%)

Query: 33  LSEAISSLDLLAQRGIRLPAE-TLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLS 91
            S+A++S   +   G R P       +L+ C     L+ G+ VH  + +        +  
Sbjct: 86  FSKALASFVEMRASG-RCPDHNVFPSVLKSCTMMMDLRFGESVHGFI-VRLGMDCDLYTG 143

Query: 92  NHLISMYFKC---GSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHA----RNLFDN 144
           N L++MY K    GS +    VFD++P +   S +  +   A   +M       R +F+ 
Sbjct: 144 NALMNMYAKLLGMGSKISVGNVFDEMPQRTSNSGDEDVK--AETCIMPFGIDSVRRVFEV 201

Query: 145 MAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLT 204
           M  +DVVS+NT+I GYA+SG  E+ L+  + +    +  + F+ + +L I  +  ++   
Sbjct: 202 MPRKDVVSYNTIIAGYAQSGMYEDALRMVREMGTTDLKPDSFTLSSVLPIFSEYVDVIKG 261

Query: 205 RQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKL 264
           +++HG V+  G  S+V I SS+VD Y                               AK 
Sbjct: 262 KEIHGYVIRKGIDSDVYIGSSLVDMY-------------------------------AKS 290

Query: 265 GDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCL 324
             +E + ++F+ +  ++ +SW +L+AGY +NG   +AL LF +M+  +++P    FSS +
Sbjct: 291 ARIEDSERVFSRLYCRDGISWNSLVAGYVQNGRYNEALRLFRQMVTAKVKPGAVAFSSVI 350

Query: 325 CACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENS 384
            ACA + +L  GKQ+HG+++R  F SN  + S+L+DMYSKCG +   R++FD   N  + 
Sbjct: 351 PACAHLATLHLGKQLHGYVLRGGFGSNIFIASALVDMYSKCGNIKAARKIFDRM-NVLDE 409

Query: 385 MLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFES 444
           + W  +I     HG+  +A+ LF +M R  VKP+++    +L AC+H GLV E   YF S
Sbjct: 410 VSWTAIIMGHALHGHGHEAVSLFEEMKRQGVKPNQVAFVAVLTACSHVGLVDEAWGYFNS 469

Query: 445 MTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNID 504
           MT   G+    EH+A + +LL +AG  ++  N + KM  E    +W+ L   C +H N++
Sbjct: 470 MTKVYGLNQELEHYAAVADLLGRAGKLEEAYNFISKMCVEPTGSVWSTLLSSCSVHKNLE 529

Query: 505 MGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIE 564
           +  KV +++   + ++   + L+ ++Y++ G+ + + K+R  + ++  +K+ A SWIE++
Sbjct: 530 LAEKVAEKIFTVDSENMGAYVLMCNMYASNGRWKEMAKLRLRMRKKGLRKKPACSWIEMK 589

Query: 565 NKVHAFSVSDSLHPMRDVLYSVLEQLAGQMGEDAPSLD 602
           NK H F   D  HP  D +   L+ +  QM ++    D
Sbjct: 590 NKTHGFVSGDRSHPSMDKINEFLKAVMEQMEKEGYVAD 627



 Score =  138 bits (347), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 87/317 (27%), Positives = 159/317 (50%), Gaps = 16/317 (5%)

Query: 125 MLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCN 184
           ++S Y NL ++  A  LF  +    V++W ++I  +       + L  +  +R      +
Sbjct: 45  VISIYTNLKLLHEALLLFKTLKSPPVLAWKSVIRCFTDQSLFSKALASFVEMRASGRCPD 104

Query: 185 EFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKC---GELSDARR 241
              F  +L  C  + +L+    VHG ++  G   ++   +++++ YAK    G       
Sbjct: 105 HNVFPSVLKSCTMMMDLRFGESVHGFIVRLGMDCDLYTGNALMNMYAKLLGMGSKISVGN 164

Query: 242 LFDETDAR-------DVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTR 294
           +FDE   R       DV   T ++      G ++S  ++F  MP K+ VS+ T+IAGY +
Sbjct: 165 VFDEMPQRTSNSGDEDVKAETCIMP----FG-IDSVRRVFEVMPRKDVVSYNTIIAGYAQ 219

Query: 295 NGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIV 354
           +G+ + AL +   M    ++P+  T SS L   +  V +  GK++HG++IR    S+  +
Sbjct: 220 SGMYEDALRMVREMGTTDLKPDSFTLSSVLPIFSEYVDVIKGKEIHGYVIRKGIDSDVYI 279

Query: 355 MSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSS 414
            SSL+DMY+K   + D  +VF     ++  + WN++++   Q+G   +A+RLF  MV + 
Sbjct: 280 GSSLVDMYAKSARIEDSERVFSRLYCRDG-ISWNSLVAGYVQNGRYNEALRLFRQMVTAK 338

Query: 415 VKPDKITLAVILNACTH 431
           VKP  +  + ++ AC H
Sbjct: 339 VKPGAVAFSSVIPACAH 355



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 74/282 (26%), Positives = 132/282 (46%), Gaps = 36/282 (12%)

Query: 31  GQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFL 90
           G   +A+  +  +    ++  + TL+ +L   +E   +  GK +H ++ + +      ++
Sbjct: 221 GMYEDALRMVREMGTTDLKPDSFTLSSVLPIFSEYVDVIKGKEIHGYV-IRKGIDSDVYI 279

Query: 91  SNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDV 150
            + L+ MY K     D+ +VF ++  ++  S+N++++GY   G    A  LF  M    V
Sbjct: 280 GSSLVDMYAKSARIEDSERVFSRLYCRDGISWNSLVAGYVQNGRYNEALRLFRQMVTAKV 339

Query: 151 VSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQ 210
                      K GAV                    +F+ ++  C  L  L L +Q+HG 
Sbjct: 340 -----------KPGAV--------------------AFSSVIPACAHLATLHLGKQLHGY 368

Query: 211 VLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESA 270
           VL  GF SN+ I+S++VD Y+KCG +  AR++FD  +  D ++WT ++ G+A  G    A
Sbjct: 369 VLRGGFGSNIFIASALVDMYSKCGNIKAARKIFDRMNVLDEVSWTAIIMGHALHGHGHEA 428

Query: 271 SKLFNEMPEK----NPVSWTTLIAGYTRNGLGQKALELFTRM 308
             LF EM  +    N V++  ++   +  GL  +A   F  M
Sbjct: 429 VSLFEEMKRQGVKPNQVAFVAVLTACSHVGLVDEAWGYFNSM 470



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 57/229 (24%), Positives = 102/229 (44%), Gaps = 40/229 (17%)

Query: 237 SDARRL---FDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYT 293
           S A++L   F  T +    + + ++S Y  L  +  A  LF  +     ++W ++I  +T
Sbjct: 22  SQAKQLHAQFIRTQSLSHTSASIVISIYTNLKLLHEALLLFKTLKSPPVLAWKSVIRCFT 81

Query: 294 RNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTI 353
              L  KAL  F  M      P+ + F S L +C  ++ L+ G+ VHGF++R     +  
Sbjct: 82  DQSLFSKALASFVEMRASGRCPDHNVFPSVLKSCTMMMDLRFGESVHGFIVRLGMDCDLY 141

Query: 354 VMSSLIDMYSKCGCL------------------NDG------------------RQVFDL 377
             ++L++MY+K   +                  N G                  R+VF++
Sbjct: 142 TGNALMNMYAKLLGMGSKISVGNVFDEMPQRTSNSGDEDVKAETCIMPFGIDSVRRVFEV 201

Query: 378 TDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVIL 426
              K+  + +NT+I+   Q G  E A+R+  +M  + +KPD  TL+ +L
Sbjct: 202 MPRKD-VVSYNTIIAGYAQSGMYEDALRMVREMGTTDLKPDSFTLSSVL 249



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 73/342 (21%), Positives = 144/342 (42%), Gaps = 61/342 (17%)

Query: 12  RKNLPNNCLIQSFLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLG 71
           R  +  N L+  +   +  G+ +EA+     +    ++  A   + ++  CA   +L LG
Sbjct: 306 RDGISWNSLVAGY---VQNGRYNEALRLFRQMVTAKVKPGAVAFSSVIPACAHLATLHLG 362

Query: 72  KRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYAN 131
           K++H ++ L        F+++ L+ MY KCG+   ARK+FD++ V +  S+  ++ G+A 
Sbjct: 363 KQLHGYV-LRGGFGSNIFIASALVDMYSKCGNIKAARKIFDRMNVLDEVSWTAIIMGHAL 421

Query: 132 LGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGI 191
            G    A +LF+ M                               +R  +  N+ +F  +
Sbjct: 422 HGHGHEAVSLFEEM-------------------------------KRQGVKPNQVAFVAV 450

Query: 192 LTICVKLEELKLTRQVHG----QVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETD 247
           LT C     + L  +  G       V G    +   +++ D   + G+L +A     +  
Sbjct: 451 LTAC---SHVGLVDEAWGYFNSMTKVYGLNQELEHYAAVADLLGRAGKLEEAYNFISKMC 507

Query: 248 ARDVLT-WTTMVSGYAKLGDMESASKLFNEM---PEKNPVSWTTLIAGYTRNGLGQKALE 303
                + W+T++S  +   ++E A K+  ++     +N  ++  +   Y  NG  ++  +
Sbjct: 508 VEPTGSVWSTLLSSCSVHKNLELAEKVAEKIFTVDSENMGAYVLMCNMYASNGRWKEMAK 567

Query: 304 LFTRMMI--LRIRPNQHTFSSCLCACASIVSLKHGKQVHGFL 343
           L  RM    LR +P          AC S + +K+  + HGF+
Sbjct: 568 LRLRMRKKGLRKKP----------AC-SWIEMKN--KTHGFV 596


>gi|224055823|ref|XP_002298671.1| predicted protein [Populus trichocarpa]
 gi|222845929|gb|EEE83476.1| predicted protein [Populus trichocarpa]
          Length = 609

 Score =  296 bits (758), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 150/474 (31%), Positives = 273/474 (57%), Gaps = 3/474 (0%)

Query: 123 NNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLK-FYKVLRRFSI 181
           N +L  Y    +++ A  LFD M +RD VSW +++  Y ++    + L  F+ +     +
Sbjct: 41  NTLLDAYGKCNLLQDAHYLFDEMPQRDHVSWASILTAYNQAKLPNKTLSIFHYMFTTDRL 100

Query: 182 SCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARR 241
             + F +A +L  C  L  L+L +QVH + +++ F+ + V+ SS+VD YAKCG  S AR 
Sbjct: 101 QPDHFVYATLLKACASLCSLRLGKQVHARFVLSPFVDDDVVKSSLVDMYAKCGLPSIARS 160

Query: 242 LFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKA 301
           +FD    +  ++WT M+SGYA+ G  + A +LF   P +N  SWT LI+G  ++G     
Sbjct: 161 VFDSILVKTSVSWTAMLSGYARSGLKDEAMELFLRTPVRNLYSWTALISGLVQSGYCIDG 220

Query: 302 LELFTRMMILRIR-PNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLID 360
             +F  M    +   +    SS + ACA++  L  GKQ+HG +I + + S   + ++L+D
Sbjct: 221 CYMFIEMRREGVDIVDPLVLSSVVGACANLAVLGLGKQIHGLVIGSGYESCLFISNALVD 280

Query: 361 MYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKI 420
           MY+KC  +   R VF+   +++  + W ++I    QHG  ++A+ L+  MV + +KP+++
Sbjct: 281 MYAKCSDILAARNVFNRMLHRD-VVSWTSIIVGAAQHGRAKEALDLYDQMVLAEIKPNEV 339

Query: 421 TLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEK 480
           T   ++ AC+H+GLV +G   F++M  D  I P+ +   C ++LL+++G  ++  + ++ 
Sbjct: 340 TFVGLIYACSHAGLVSKGRKLFKAMIEDYRISPSLQLFTCFLDLLSRSGHLNEAEDLIKT 399

Query: 481 MPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLV 540
           MP++ D   W AL   C+ HGN +MG ++ D+L+  N    +T+ LLS++Y+  GK   +
Sbjct: 400 MPHKPDEPTWAALLSACKHHGNTEMGVRIADRLLSLNMHEPSTYVLLSNVYAGAGKWEQM 459

Query: 541 EKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQM 594
            +VR+L+ + + K++   S I++  +   F   ++ HPM+D ++ +L++L  +M
Sbjct: 460 SRVRKLMTDMEVKRKPGYSSIDLGKESQVFHAGETCHPMKDEIFGLLKELDAEM 513



 Score =  168 bits (426), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 103/353 (29%), Positives = 176/353 (49%), Gaps = 34/353 (9%)

Query: 56  AFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIP 115
           A +L+ CA   SL+LGK+VH    L+        + + L+ MY KCG    AR VFD I 
Sbjct: 108 ATLLKACASLCSLRLGKQVHARFVLSPF-VDDDVVKSSLVDMYAKCGLPSIARSVFDSIL 166

Query: 116 VKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKV 175
           VK   S+  MLSGYA  G+   A  LF     R++ SW  +I G  +SG   +G   +  
Sbjct: 167 VKTSVSWTAMLSGYARSGLKDEAMELFLRTPVRNLYSWTALISGLVQSGYCIDGCYMFIE 226

Query: 176 LRRFSIS-CNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCG 234
           +RR  +   +    + ++  C  L  L L +Q+HG V+ +G+ S + IS+++VD YAKC 
Sbjct: 227 MRREGVDIVDPLVLSSVVGACANLAVLGLGKQIHGLVIGSGYESCLFISNALVDMYAKCS 286

Query: 235 ELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTR 294
           ++  AR +F+    RDV++WT+++ G A+                               
Sbjct: 287 DILAARNVFNRMLHRDVVSWTSIIVGAAQ------------------------------- 315

Query: 295 NGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTI- 353
           +G  ++AL+L+ +M++  I+PN+ TF   + AC+    +  G+++   +I     S ++ 
Sbjct: 316 HGRAKEALDLYDQMVLAEIKPNEVTFVGLIYACSHAGLVSKGRKLFKAMIEDYRISPSLQ 375

Query: 354 VMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRL 406
           + +  +D+ S+ G LN+   +     +K +   W  ++SA   HG  E  +R+
Sbjct: 376 LFTCFLDLLSRSGHLNEAEDLIKTMPHKPDEPTWAALLSACKHHGNTEMGVRI 428



 Score =  115 bits (287), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 78/253 (30%), Positives = 126/253 (49%), Gaps = 42/253 (16%)

Query: 187 SFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDET 246
           S+   L +C K +     +++H Q++ +G      + ++++DAY KC  L DA  LFDE 
Sbjct: 4   SYLHRLKLCTKHQAPLNAKKIHAQIVKSGLNQCQPLPNTLLDAYGKCNLLQDAHYLFDEM 63

Query: 247 DARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFT 306
             RD ++W ++++ Y +       +KL N                        K L +F 
Sbjct: 64  PQRDHVSWASILTAYNQ-------AKLPN------------------------KTLSIFH 92

Query: 307 RMMIL-RIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKC 365
            M    R++P+   +++ L ACAS+ SL+ GKQVH   + + F  + +V SSL+DMY+KC
Sbjct: 93  YMFTTDRLQPDHFVYATLLKACASLCSLRLGKQVHARFVLSPFVDDDVVKSSLVDMYAKC 152

Query: 366 GCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVI 425
           G  +  R VFD    K  S+ W  M+S   + G  ++A+ LF   +R+ V+      A+I
Sbjct: 153 GLPSIARSVFDSILVK-TSVSWTAMLSGYARSGLKDEAMELF---LRTPVRNLYSWTALI 208

Query: 426 LNACTHSGLVQEG 438
                 SGLVQ G
Sbjct: 209 ------SGLVQSG 215



 Score = 62.4 bits (150), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 62/270 (22%), Positives = 117/270 (43%), Gaps = 46/270 (17%)

Query: 54  TLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDK 113
            L+ ++  CA    L LGK++H  L +        F+SN L+ MY KC   + AR VF++
Sbjct: 239 VLSSVVGACANLAVLGLGKQIH-GLVIGSGYESCLFISNALVDMYAKCSDILAARNVFNR 297

Query: 114 IPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDV----VSWNTMIIGYAKSGAVEEG 169
           +  +++ S+ +++ G A  G  K A +L+D M   ++    V++  +I   + +G V +G
Sbjct: 298 MLHRDVVSWTSIIVGAAQHGRAKEALDLYDQMVLAEIKPNEVTFVGLIYACSHAGLVSKG 357

Query: 170 LKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDA 229
            K +K +                     +E+ +++  +    L T FL          D 
Sbjct: 358 RKLFKAM---------------------IEDYRISPSLQ---LFTCFL----------DL 383

Query: 230 YAKCGELSDARRLFDETDAR-DVLTWTTMVSGYAKLGDMESASKLFNEMPEKN---PVSW 285
            ++ G L++A  L      + D  TW  ++S     G+ E   ++ + +   N   P ++
Sbjct: 384 LSRSGHLNEAEDLIKTMPHKPDEPTWAALLSACKHHGNTEMGVRIADRLLSLNMHEPSTY 443

Query: 286 TTLIAGYTRNGLGQ---KALELFTRMMILR 312
             L   Y   G  +   +  +L T M + R
Sbjct: 444 VLLSNVYAGAGKWEQMSRVRKLMTDMEVKR 473


>gi|414869441|tpg|DAA47998.1| TPA: hypothetical protein ZEAMMB73_181337 [Zea mays]
          Length = 639

 Score =  296 bits (758), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 159/478 (33%), Positives = 252/478 (52%), Gaps = 38/478 (7%)

Query: 118 NLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKS-GAVEEGLKFYKVL 176
            LF  N++ S YA  G++  A  +FD M  R+VV+W T++   A + G  +E L+F   +
Sbjct: 103 GLFVSNSLASMYAKFGLLDDALRMFDGMPVRNVVTWTTVVAALASADGRKQEALRFLVAM 162

Query: 177 RRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGEL 236
           RR  ++ N ++F+ +L  C     L     VH   +  G  S+V + SS++DAY K G+L
Sbjct: 163 RRDGVAPNAYTFSSVLGACTTPGMLT---AVHASTVKAGLDSDVFVRSSLIDAYVKLGDL 219

Query: 237 SDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNG 296
              RR+FDE   RD++ W ++++G+A+ GD                              
Sbjct: 220 DGGRRVFDEMVTRDLVVWNSIIAGFAQSGD------------------------------ 249

Query: 297 LGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMS 356
            G  A+ELF RM       NQ T +S L AC  +V L+ G+QVH  +++  +  + I+ +
Sbjct: 250 -GVGAIELFMRMKDAGFSSNQGTLTSVLRACTGMVMLEAGRQVHAHVLK--YDRDLILHN 306

Query: 357 SLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVK 416
           +L+DMY KCG L D   +F     + + + W+TM+S L Q+G   +A+R+F  M    V 
Sbjct: 307 ALLDMYCKCGSLEDADALFHRMPQR-DVISWSTMVSGLAQNGKSVEALRVFDLMKSQGVA 365

Query: 417 PDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMN 476
           P+ +T+  +L AC+H+GLV++G  YF SM    GI P +EHH C+++LL +AG  D+ + 
Sbjct: 366 PNHVTMVGVLFACSHAGLVEDGWHYFRSMKRLFGIQPEREHHNCMVDLLGRAGKLDEAVE 425

Query: 477 QLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGK 536
            +  M  E DS +W  L G CR+H N  +      +++   P       LLS+ Y+ L +
Sbjct: 426 FIHGMSLEPDSVIWRTLLGACRMHKNASLAAYAAREILKLEPDDQGARVLLSNTYADLRQ 485

Query: 537 GRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQM 594
               EK  + + +R  +KE   SWIE+E +VH F   D  HP  D +   L +L G++
Sbjct: 486 WTDAEKPWKAMRDRGMRKEPGRSWIELEKRVHVFIAGDLSHPCSDTIIQELNRLIGRI 543



 Score = 69.7 bits (169), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 40/130 (30%), Positives = 69/130 (53%), Gaps = 7/130 (5%)

Query: 54  TLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDK 113
           TL  +L+ C     L+ G++VH H+    R      L N L+ MY KCGS  DA  +F +
Sbjct: 271 TLTSVLRACTGMVMLEAGRQVHAHVLKYDRDL---ILHNALLDMYCKCGSLEDADALFHR 327

Query: 114 IPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGY----AKSGAVEEG 169
           +P +++ S++ M+SG A  G    A  +FD M  + V   +  ++G     + +G VE+G
Sbjct: 328 MPQRDVISWSTMVSGLAQNGKSVEALRVFDLMKSQGVAPNHVTMVGVLFACSHAGLVEDG 387

Query: 170 LKFYKVLRRF 179
             +++ ++R 
Sbjct: 388 WHYFRSMKRL 397


>gi|359492699|ref|XP_002280968.2| PREDICTED: pentatricopeptide repeat-containing protein
           At1g19720-like [Vitis vinifera]
          Length = 1545

 Score =  296 bits (758), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 189/636 (29%), Positives = 312/636 (49%), Gaps = 81/636 (12%)

Query: 35  EAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHL 94
           E +     + + GI      L  ILQ C      + GK +H  L +         +SN +
Sbjct: 168 EVVQHFFFMMEDGIVPDEFLLPKILQACGNCGDAETGKLIH-SLVIRCGMNFNIRVSNSI 226

Query: 95  ISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDV---- 150
           +++Y KCG    AR+ F+ +  ++  S+N++++GY   G ++ +  LF+ M E  +    
Sbjct: 227 LAVYAKCGRLSCARRFFENMDYRDRVSWNSIITGYCQKGELEKSHQLFEKMQEEGIEPGL 286

Query: 151 VSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSF---------------------- 188
           V+WN +I  Y++SG  ++ ++  K +  F I  + F++                      
Sbjct: 287 VTWNILINSYSQSGKCDDAMELMKKMESFRIVPDVFTWTSMISGFAQNNRRSQALELFRE 346

Query: 189 ---AGI----------LTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGE 235
              AGI          ++ C  L+ LK   ++H   +  G + ++++ +S++D Y+K GE
Sbjct: 347 MLLAGIEPNGVTVTSGISACASLKALKKGMELHSVAVKIGCVEDLLVGNSLIDMYSKSGE 406

Query: 236 LSDARRLFD----------------------------------ETDAR-DVLTWTTMVSG 260
           L DARR+FD                                  E+D   +V+TW  M+SG
Sbjct: 407 LEDARRVFDMILKKDVYTWNSMIGGYCQAGYCGKAYDLFIKMHESDVPPNVVTWNAMISG 466

Query: 261 YAKLGDMESASKLFNEMPE-----KNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRP 315
           Y + GD + A  LF+ M +     ++  SW +LIAGY +NG   KAL +F +M    IRP
Sbjct: 467 YIQNGDEDQAMDLFHRMEKDGLIKRDTASWNSLIAGYLQNGHKNKALGIFRQMQSFCIRP 526

Query: 316 NQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVF 375
           N  T  S L ACA++V+ K  K++HG ++R N  S   V + LID Y+K G +   + +F
Sbjct: 527 NSVTMLSILPACANLVAAKKVKEIHGCILRRNLGSELSVANCLIDTYAKSGNIVYAQTIF 586

Query: 376 DLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLV 435
               +K+  + WN++I+    HG  + A+ LF  M +  VKP + T   I+ A + SG+V
Sbjct: 587 QGISSKD-IISWNSLIAGYVLHGCSDSALDLFDQMTKMGVKPSRGTFLSIIYAFSLSGMV 645

Query: 436 QEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHG 495
            +G   F SM  D  I+P  EHH+ +I+LL ++G   + +  +E M  E DS +W AL  
Sbjct: 646 DKGKQVFSSMMEDYQILPGLEHHSAMIDLLGRSGKLGEAIEFIEDMAIEPDSCIWAALLT 705

Query: 496 VCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKE 555
             +IHGNI +  +  + L++  P + + H  +  +Y+  GK   V K+R+     + K+ 
Sbjct: 706 ASKIHGNIGLAIRAGECLLELEPSNFSIHQQILQMYALSGKFEDVSKLRKSEKRSETKQP 765

Query: 556 QAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLA 591
              SWIE +N VH F   D   P  D L+S +E +A
Sbjct: 766 LGCSWIEAKNIVHTFVADDRSRPYFDFLHSWIENVA 801



 Score =  227 bits (579), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 144/494 (29%), Positives = 236/494 (47%), Gaps = 73/494 (14%)

Query: 27  LISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTP 86
           L   G+L++AI+ LD +AQ G  +   T   +LQ C +  S +LG+++H  + L +   P
Sbjct: 60  LCKNGRLADAIACLDAIAQGGSNVKPNTYMQLLQSCIDQGSAELGRKLHARIGLLEEMNP 119

Query: 87  TTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMA 146
             F+   L+SMY KCGS  +ARKVF ++  +NL++++ M+  Y+   M +     F  M 
Sbjct: 120 --FVETKLVSMYAKCGSLGEARKVFGEMRERNLYAWSAMIGAYSREQMWREVVQHFFFMM 177

Query: 147 ERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQ 206
           E  +V                                +EF    IL  C    + +  + 
Sbjct: 178 EDGIVP-------------------------------DEFLLPKILQACGNCGDAETGKL 206

Query: 207 VHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGD 266
           +H  V+  G   N+ +S+SI+  YAKCG LS ARR F+  D RD ++W ++++GY + G+
Sbjct: 207 IHSLVIRCGMNFNIRVSNSILAVYAKCGRLSCARRFFENMDYRDRVSWNSIITGYCQKGE 266

Query: 267 MESASKLFNEMPEK---------------------------------------NPVSWTT 287
           +E + +LF +M E+                                       +  +WT+
Sbjct: 267 LEKSHQLFEKMQEEGIEPGLVTWNILINSYSQSGKCDDAMELMKKMESFRIVPDVFTWTS 326

Query: 288 LIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTN 347
           +I+G+ +N    +ALELF  M++  I PN  T +S + ACAS+ +LK G ++H   ++  
Sbjct: 327 MISGFAQNNRRSQALELFREMLLAGIEPNGVTVTSGISACASLKALKKGMELHSVAVKIG 386

Query: 348 FRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLF 407
              + +V +SLIDMYSK G L D R+VFD+   K++   WN+MI    Q GY  +A  LF
Sbjct: 387 CVEDLLVGNSLIDMYSKSGELEDARRVFDMI-LKKDVYTWNSMIGGYCQAGYCGKAYDLF 445

Query: 408 HDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQ 467
             M  S V P+ +T   +++    +G   + +  F  M  D  I  +      LI    Q
Sbjct: 446 IKMHESDVPPNVVTWNAMISGYIQNGDEDQAMDLFHRMEKDGLIKRDTASWNSLIAGYLQ 505

Query: 468 AGCSDQLMNQLEKM 481
            G  ++ +    +M
Sbjct: 506 NGHKNKALGIFRQM 519



 Score = 54.7 bits (130), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 46/168 (27%), Positives = 81/168 (48%), Gaps = 8/168 (4%)

Query: 10  INRKNLPNNCLIQSFLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLK 69
           I R     N LI  +L     G  ++A+     +    IR  + T+  IL  CA   + K
Sbjct: 489 IKRDTASWNSLIAGYLQ---NGHKNKALGIFRQMQSFCIRPNSVTMLSILPACANLVAAK 545

Query: 70  LGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGY 129
             K +H  + L +       ++N LI  Y K G+ V A+ +F  I  K++ S+N++++GY
Sbjct: 546 KVKEIHGCI-LRRNLGSELSVANCLIDTYAKSGNIVYAQTIFQGISSKDIISWNSLIAGY 604

Query: 130 ANLGMMKHARNLFDNMAERDVV----SWNTMIIGYAKSGAVEEGLKFY 173
              G    A +LFD M +  V     ++ ++I  ++ SG V++G + +
Sbjct: 605 VLHGCSDSALDLFDQMTKMGVKPSRGTFLSIIYAFSLSGMVDKGKQVF 652


>gi|449464272|ref|XP_004149853.1| PREDICTED: pentatricopeptide repeat-containing protein At5g55740,
           chloroplastic-like [Cucumis sativus]
 gi|449520209|ref|XP_004167126.1| PREDICTED: pentatricopeptide repeat-containing protein At5g55740,
           chloroplastic-like [Cucumis sativus]
          Length = 840

 Score =  296 bits (758), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 172/549 (31%), Positives = 283/549 (51%), Gaps = 41/549 (7%)

Query: 85  TPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDN 144
           T ++FLS          G    A  V   + + N+   +++++ Y+ +G+++ A  +F  
Sbjct: 284 TLSSFLSASANLSVIDEGKQGHALAVLSGLELTNILG-SSLINFYSKVGLVEDAELVFSE 342

Query: 145 MAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLT 204
           M E+D V+WN ++ GY  +G V+  L    V++  ++  +  + A I+        LKL 
Sbjct: 343 MLEKDTVTWNLLVSGYVHNGLVDRALDLCHVMQSENLRFDSVTLASIMAAAADSRNLKLG 402

Query: 205 RQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKL 264
           ++ H   +     S+V ++SSI+D YAKC +L  ARR+FD T  RD++ W T+++ YA+ 
Sbjct: 403 KEGHSFCVRNNLESDVAVASSIIDMYAKCEKLECARRVFDATAKRDLIMWNTLLAAYAEQ 462

Query: 265 GDMESASKLFNEM------PE---------------------------------KNPVSW 285
           G      KLF +M      P                                   N ++W
Sbjct: 463 GHSGETLKLFYQMQLEGLPPNVISWNSVILGLLNKGKVDQAKDTFMEMQSLGICPNLITW 522

Query: 286 TTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIR 345
           TTLI G  +NGLG +A   F  M    I+PN  + SS L AC+++ SL HG+ +H ++ R
Sbjct: 523 TTLICGLAQNGLGDEAFLTFQSMEEAGIKPNSLSISSLLSACSTMASLPHGRAIHCYITR 582

Query: 346 TNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIR 405
                +T V+ SL++MY+KCG +N  ++VFD+   KE   ++N MIS    HG   +A+ 
Sbjct: 583 HELSVSTPVLCSLVNMYAKCGSINQAKRVFDMILKKELP-VYNAMISGYALHGQAVEALS 641

Query: 406 LFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELL 465
           LF  +    +KPD+IT   IL+AC H+GLV+EGL  F  M  +  I+   EH+ CL+ +L
Sbjct: 642 LFRRLKEECIKPDEITFTSILSACGHAGLVREGLELFIDMVSNHKIVAQAEHYGCLVSIL 701

Query: 466 AQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHG 525
           +++   D+ +  +  MP+E D++++ +L   CR H + ++  ++ ++L+   P +S  + 
Sbjct: 702 SRSHNLDEALRIILGMPFEPDAFIFGSLLAACREHPDFELKERLFERLLKLEPDNSGNYV 761

Query: 526 LLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYS 585
            LS+ Y+A G      KVR L+ ER   K    S I+I NK H F   D  H     +Y 
Sbjct: 762 ALSNAYAATGMWDEASKVRGLMKERSLSKIPGHSLIQIGNKTHVFFAGDKSHSRTKEIYM 821

Query: 586 VLEQLAGQM 594
           +L  L  +M
Sbjct: 822 MLALLRVEM 830



 Score =  166 bits (420), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 100/363 (27%), Positives = 178/363 (49%), Gaps = 33/363 (9%)

Query: 119 LFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRR 178
           ++   ++L  Y   G+ + A+ +FD + E+++V+WN+MI+ + ++G   E ++ +  +R 
Sbjct: 216 IYVATSLLDMYGKCGLCEEAKKVFDKILEKNIVAWNSMIVNFTQNGLNAEAVETFYEMRV 275

Query: 179 FSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSD 238
             ++  + + +  L+    L  +   +Q H   +++G     ++ SS+++ Y+K G + D
Sbjct: 276 EGVAPTQVTLSSFLSASANLSVIDEGKQGHALAVLSGLELTNILGSSLINFYSKVGLVED 335

Query: 239 ARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLG 298
           A  +F E   +D +TW  +VS                               GY  NGL 
Sbjct: 336 AELVFSEMLEKDTVTWNLLVS-------------------------------GYVHNGLV 364

Query: 299 QKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSL 358
            +AL+L   M    +R +  T +S + A A   +LK GK+ H F +R N  S+  V SS+
Sbjct: 365 DRALDLCHVMQSENLRFDSVTLASIMAAAADSRNLKLGKEGHSFCVRNNLESDVAVASSI 424

Query: 359 IDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPD 418
           IDMY+KC  L   R+VFD T  K + ++WNT+++A  + G+  + ++LF+ M    + P+
Sbjct: 425 IDMYAKCEKLECARRVFDATA-KRDLIMWNTLLAAYAEQGHSGETLKLFYQMQLEGLPPN 483

Query: 419 KITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQL 478
            I+   ++    + G V +    F  M   LGI PN      LI  LAQ G  D+     
Sbjct: 484 VISWNSVILGLLNKGKVDQAKDTFMEM-QSLGICPNLITWTTLICGLAQNGLGDEAFLTF 542

Query: 479 EKM 481
           + M
Sbjct: 543 QSM 545



 Score =  145 bits (365), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 108/409 (26%), Positives = 181/409 (44%), Gaps = 66/409 (16%)

Query: 26  SLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLH-LKLTQRK 84
           SL  +G L EA+  +  L    I +  +    +LQ C   ++L LG+++H   LK  +  
Sbjct: 52  SLCKQGHLLEALDLVTDLELEDITIGPDVYGELLQGCVYERALSLGQQIHGRILKNGESI 111

Query: 85  TPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDN 144
               ++   L+  Y KC     A ++F K+ V+N FS+  ++   + +G  + A   F  
Sbjct: 112 AKNEYIETKLVIFYSKCDESEIANRLFGKLQVQNEFSWAAIMGLKSRMGFNQEALMGFRE 171

Query: 145 MAERDVVSWNTMI-IGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKL 203
           M E  ++  N +I I +  SGA                                L  +  
Sbjct: 172 MHEYGLLLDNFVIPIAFKASGA--------------------------------LRWIGF 199

Query: 204 TRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAK 263
            + VH  V+  G    + +++S++D Y KCG                             
Sbjct: 200 GKSVHAYVVKMGLGGCIYVATSLLDMYGKCGLC--------------------------- 232

Query: 264 LGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSC 323
               E A K+F+++ EKN V+W ++I  +T+NGL  +A+E F  M +  + P Q T SS 
Sbjct: 233 ----EEAKKVFDKILEKNIVAWNSMIVNFTQNGLNAEAVETFYEMRVEGVAPTQVTLSSF 288

Query: 324 LCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKEN 383
           L A A++  +  GKQ H   + +      I+ SSLI+ YSK G + D   VF     K+ 
Sbjct: 289 LSASANLSVIDEGKQGHALAVLSGLELTNILGSSLINFYSKVGLVEDAELVFSEMLEKD- 347

Query: 384 SMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHS 432
           ++ WN ++S    +G  ++A+ L H M   +++ D +TLA I+ A   S
Sbjct: 348 TVTWNLLVSGYVHNGLVDRALDLCHVMQSENLRFDSVTLASIMAAAADS 396



 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 94/383 (24%), Positives = 161/383 (42%), Gaps = 54/383 (14%)

Query: 142 FDNMAERDVVSWNTM---IIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKL 198
           F  +A    +S+ +    I    K G + E L     L    I+     +  +L  CV  
Sbjct: 32  FSQIASNVQISYKSYLNHISSLCKQGHLLEALDLVTDLELEDITIGPDVYGELLQGCVYE 91

Query: 199 EELKLTRQVHGQVLVTG--FLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTT 256
             L L +Q+HG++L  G     N  I + +V  Y+KC E   A RLF +   ++  +W  
Sbjct: 92  RALSLGQQIHGRILKNGESIAKNEYIETKLVIFYSKCDESEIANRLFGKLQVQNEFSWAA 151

Query: 257 MVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPN 316
           ++   +++G        FN                       Q+AL  F  M    +  +
Sbjct: 152 IMGLKSRMG--------FN-----------------------QEALMGFREMHEYGLLLD 180

Query: 317 QHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFD 376
                    A  ++  +  GK VH ++++        V +SL+DMY KCG   + ++VFD
Sbjct: 181 NFVIPIAFKASGALRWIGFGKSVHAYVVKMGLGGCIYVATSLLDMYGKCGLCEEAKKVFD 240

Query: 377 LTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQ 436
               K N + WN+MI   TQ+G + +A+  F++M    V P ++TL+  L+A  +  ++ 
Sbjct: 241 KILEK-NIVAWNSMIVNFTQNGLNAEAVETFYEMRVEGVAPTQVTLSSFLSASANLSVID 299

Query: 437 EGLTYFESMTHDLGIIPNQEHH----ACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNA 492
           EG        H L ++   E      + LI   ++ G  +       +M  E D+  WN 
Sbjct: 300 EG-----KQGHALAVLSGLELTNILGSSLINFYSKVGLVEDAELVFSEM-LEKDTVTWNL 353

Query: 493 LHGVCRIHGNIDMGRKVVDQLID 515
           L     + G +  G  +VD+ +D
Sbjct: 354 L-----VSGYVHNG--LVDRALD 369


>gi|297832866|ref|XP_002884315.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297330155|gb|EFH60574.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 861

 Score =  296 bits (758), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 168/553 (30%), Positives = 285/553 (51%), Gaps = 46/553 (8%)

Query: 43  LAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCG 102
           L   G+     +L+ + + CA  K L  G +++  L +    +    ++N  I MY KC 
Sbjct: 331 LMSSGLGFDEISLSGVFRACALVKGLSEGLQIY-DLAIKSSLSLDVCVANAAIDMYGKCQ 389

Query: 103 SDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAK 162
           +  +A +VFD+                               M  RD VSWN +I  + +
Sbjct: 390 ALAEAFRVFDE-------------------------------MRRRDAVSWNAIIAAHEQ 418

Query: 163 SGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVI 222
           +G   E L  +  + R  I  +EF+F  +L  C     L    ++H  ++ +G  SN  +
Sbjct: 419 NGKGYETLFLFVSMLRSRIEPDEFTFGSVLKACTG-GSLGYGMEIHSSIVKSGMASNSSV 477

Query: 223 SSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNP 282
             S++D Y+KCG + +A ++      R      T VSG      ME   K+ N+  ++  
Sbjct: 478 GCSLIDMYSKCGMIEEAEKIHSRFFQR------TNVSG-----TMEELEKMHNKRLQEMC 526

Query: 283 VSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGF 342
           VSW ++I+GY      + A  LFTRMM + I P++ T+++ L  CA++ S   GKQ+H  
Sbjct: 527 VSWNSIISGYVMKEQSEDAQMLFTRMMEMGITPDKFTYATVLDTCANLASAGLGKQIHAQ 586

Query: 343 LIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQ 402
           +I+   +S+  + S+L+DMYSKCG L+D R +F+    + + + WN MI     HG  E+
Sbjct: 587 VIKKELQSDVYISSTLVDMYSKCGDLHDSRLMFE-KSLRRDFVTWNAMICGYAHHGKGEE 645

Query: 403 AIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLI 462
           AI+LF  M+  ++KP+ +T   IL AC H GL+ +GL YF  M  D G+ P   H++ ++
Sbjct: 646 AIQLFERMILENIKPNHVTFISILRACAHMGLIDKGLEYFYMMKRDYGLDPQLPHYSNMV 705

Query: 463 ELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIH-GNIDMGRKVVDQLIDQNPQSS 521
           ++L ++G   + +  + +MP+E D  +W  L GVC IH  N+++  +    L+  +PQ S
Sbjct: 706 DILGKSGKVKRALELIREMPFEADDVIWRTLLGVCTIHRNNVEVAEEATAALLRLDPQDS 765

Query: 522 ATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRD 581
           + + LLS++Y+  G    V  +R+ +   + KKE   SW+E+++++H F V D  HP  +
Sbjct: 766 SAYTLLSNVYADAGMWEKVSDLRRNMRGFKLKKEPGCSWVELKDELHVFLVGDKAHPRWE 825

Query: 582 VLYSVLEQLAGQM 594
            +Y  L  +  +M
Sbjct: 826 EIYEELGLIYSEM 838



 Score =  201 bits (510), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 128/450 (28%), Positives = 232/450 (51%), Gaps = 47/450 (10%)

Query: 52  AETLAFILQ----QCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDA 107
           AE L F+      +CA+  +L+LGK+ H H+ L+  + PTTF+ N L+ +Y      V A
Sbjct: 2   AENLRFLRMNRAVECAKQGALELGKQAHAHMILSGFR-PTTFVLNCLLQVYTNSRDFVSA 60

Query: 108 RKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVE 167
             VFD++P++++ S+N M++GYA    M  A   F+ M  RDVVSWN+M+ GY ++G   
Sbjct: 61  SMVFDRMPLRDVVSWNKMINGYAKSNNMVKASFFFNMMPVRDVVSWNSMLSGYLQNGETL 120

Query: 168 EGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIV 227
           + ++ +  + R     +  +FA IL +C  LE+  L  Q+HG V+  G  ++VV +S+++
Sbjct: 121 KSIEVFVDMGRAGTEFDGRTFAIILKVCSCLEDTSLGMQIHGVVVRVGCDTDVVAASALL 180

Query: 228 DAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTT 287
           D YAK     ++ R+F     ++ ++W+ ++                             
Sbjct: 181 DMYAKGKRFVESLRVFQGIPEKNSVSWSAII----------------------------- 211

Query: 288 LIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTN 347
             AG  +N L   AL+ F  M  +    +Q  ++S L +CA++  L+ G Q+H   ++++
Sbjct: 212 --AGCVQNNLLSLALKFFKEMQKVNAGVSQSIYASVLRSCAALSELRLGGQLHAHALKSD 269

Query: 348 FRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLF 407
           F ++ IV ++ +DMY+KC  + D + +FD ++N  N   +N MI+  +Q  +  +A+ LF
Sbjct: 270 FAADGIVRTATLDMYAKCDNMQDAQILFDKSENL-NRQSYNAMITGYSQEEHGFKALLLF 328

Query: 408 HDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACL----IE 463
           H ++ S +  D+I+L+ +  AC     + EGL  +     DL I  +     C+    I+
Sbjct: 329 HRLMSSGLGFDEISLSGVFRACALVKGLSEGLQIY-----DLAIKSSLSLDVCVANAAID 383

Query: 464 LLAQAGCSDQLMNQLEKMPYEHDSYLWNAL 493
           +  +     +     ++M    D+  WNA+
Sbjct: 384 MYGKCQALAEAFRVFDEMR-RRDAVSWNAI 412



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 132/520 (25%), Positives = 214/520 (41%), Gaps = 115/520 (22%)

Query: 56  AFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIP 115
           A +L+ CA    L+LG ++H H  L         +    + MY KC +            
Sbjct: 243 ASVLRSCAALSELRLGGQLHAH-ALKSDFAADGIVRTATLDMYAKCDN------------ 289

Query: 116 VKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKV 175
                              M+ A+ LFD     +  S+N MI GY++     + L  +  
Sbjct: 290 -------------------MQDAQILFDKSENLNRQSYNAMITGYSQEEHGFKALLLFHR 330

Query: 176 LRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGE 235
           L    +  +E S +G+   C  ++ L    Q++   + +    +V ++++ +D Y KC  
Sbjct: 331 LMSSGLGFDEISLSGVFRACALVKGLSEGLQIYDLAIKSSLSLDVCVANAAIDMYGKCQA 390

Query: 236 LSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRN 295
           L++A R+FDE   RD +                               SW  +IA + +N
Sbjct: 391 LAEAFRVFDEMRRRDAV-------------------------------SWNAIIAAHEQN 419

Query: 296 GLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVM 355
           G G + L LF  M+  RI P++ TF S L AC    SL +G ++H  ++++   SN+ V 
Sbjct: 420 GKGYETLFLFVSMLRSRIEPDEFTFGSVLKACTG-GSLGYGMEIHSSIVKSGMASNSSVG 478

Query: 356 SSLIDMYSKCGCLNDGRQV----FDLTD------------NK---ENSMLWNTMISALTQ 396
            SLIDMYSKCG + +  ++    F  T+            NK   E  + WN++IS    
Sbjct: 479 CSLIDMYSKCGMIEEAEKIHSRFFQRTNVSGTMEELEKMHNKRLQEMCVSWNSIISGYVM 538

Query: 397 HGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQE 456
               E A  LF  M+   + PDK T A +L+ C +  L   GL               ++
Sbjct: 539 KEQSEDAQMLFTRMMEMGITPDKFTYATVLDTCAN--LASAGL--------------GKQ 582

Query: 457 HHACLI--ELLAQAGCSDQLMNQLEKMPYEHDSYL------------WNALHGVCRIHGN 502
            HA +I  EL +    S  L++   K    HDS L            WNA+      HG 
Sbjct: 583 IHAQVIKKELQSDVYISSTLVDMYSKCGDLHDSRLMFEKSLRRDFVTWNAMICGYAHHGK 642

Query: 503 IDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEK 542
            +   ++ +++I +N + +  H    SI  A     L++K
Sbjct: 643 GEEAIQLFERMILENIKPN--HVTFISILRACAHMGLIDK 680



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 49/177 (27%), Positives = 93/177 (52%), Gaps = 11/177 (6%)

Query: 10  INRKNLPNNCLIQSFLSLISKGQLSEAISSLDLLAQR----GIRLPAETLAFILQQCAES 65
           ++ K L   C+  S+ S+IS   + E      +L  R    GI     T A +L  CA  
Sbjct: 517 MHNKRLQEMCV--SWNSIISGYVMKEQSEDAQMLFTRMMEMGITPDKFTYATVLDTCANL 574

Query: 66  KSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNM 125
            S  LGK++H  + + +      ++S+ L+ MY KCG   D+R +F+K   ++  ++N M
Sbjct: 575 ASAGLGKQIHAQV-IKKELQSDVYISSTLVDMYSKCGDLHDSRLMFEKSLRRDFVTWNAM 633

Query: 126 LSGYANLGMMKHARNLFDNMAERDV----VSWNTMIIGYAKSGAVEEGLKFYKVLRR 178
           + GYA+ G  + A  LF+ M   ++    V++ +++   A  G +++GL+++ +++R
Sbjct: 634 ICGYAHHGKGEEAIQLFERMILENIKPNHVTFISILRACAHMGLIDKGLEYFYMMKR 690


>gi|449439631|ref|XP_004137589.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
          Length = 555

 Score =  296 bits (757), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 160/516 (31%), Positives = 296/516 (57%), Gaps = 21/516 (4%)

Query: 99  FKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMII 158
           F+  +   A+ V      KN +  N++LS Y + G +  A+ +F+++       WN +I 
Sbjct: 40  FRNLAKTHAQIVVSGFSQKN-YILNHLLSLYISFGSLGSAQKVFEDITAPSTTVWNQIIK 98

Query: 159 GYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLS 218
           G+ +S   ++ ++ +K +    +  N F+++ +L+ CV+    +   Q+HG+VLV G+ S
Sbjct: 99  GHTRSKTSKKSIELFKRMTLAGVEANGFTYSFLLSACVRSRLFREGEQIHGRVLVNGYWS 158

Query: 219 NVVISSSIVDAYAKCGELSD-----ARRLFDETDARDVLTWTTMVSGYAKLGDMESASKL 273
           N+ + +++++ YA  G+  D     A  LFDE    +V+ W ++++GY + GD + A K+
Sbjct: 159 NLYVRTNLINLYANGGDGGDFDLKRALYLFDEMPDSNVVGWNSLLAGYVRRGDFDGARKV 218

Query: 274 FNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSL 333
           F+EMPE+N  +WT ++AG+ +NG  + AL LF +M    +  +Q    + L ACA +  L
Sbjct: 219 FDEMPERNVRTWTIMVAGFAQNGQCKLALSLFDQMRRAGVELDQVALVAALSACAELGDL 278

Query: 334 KHGKQVHGFLIRTNFRSNTIVM-----SSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWN 388
             GK +HG++ RT +RS  + +     ++LI MY+ CG ++   ++F+    + N++ W+
Sbjct: 279 TLGKWIHGYVERT-WRSRHLPVLVSLNNALIHMYASCGAMDLAYKLFEEIPQR-NTVSWS 336

Query: 389 TMISALTQHGYDEQAIRLFHDMV---RSSVKPDKITLAVILNACTHSGLVQEGLTYFESM 445
           ++I+   + G   +AIR+F  M+   ++ V+PD+IT    L AC+H+GL+ +G+  F+SM
Sbjct: 337 SIITGFAKQGCGVEAIRIFQLMLCSGQNEVRPDEITFIGALTACSHAGLISDGIRLFQSM 396

Query: 446 THDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDM 505
               G+IP  EH+ C+++LL++AG   + ++ +E MP + ++ +W AL   CR+H N ++
Sbjct: 397 HKTFGVIPQIEHYGCMVDLLSRAGLLTEALSLIESMPMKPNNAVWGALLSGCRLHKNDEI 456

Query: 506 GRKVVDQL---IDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIE 562
              V   L   ID N Q++    LL+++Y+A G+ +    VR+ +++   KK    SWIE
Sbjct: 457 VSHVAKHLSFEIDPNNQAAGYFMLLANVYAADGRWQDTATVRRNMHDIGVKKPSGRSWIE 516

Query: 563 IENKVHAFSVSDSLHPMRDVLYSVLEQLA--GQMGE 596
           I   + +F V +  H   +++Y +L  +    QMGE
Sbjct: 517 INGVLCSFMVGEETHKDVNLIYEMLGNITRQTQMGE 552



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 88/372 (23%), Positives = 177/372 (47%), Gaps = 53/372 (14%)

Query: 47  GIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCG--SD 104
           G+     T +F+L  C  S+  + G+++H  + L        ++  +LI++Y   G   D
Sbjct: 120 GVEANGFTYSFLLSACVRSRLFREGEQIHGRV-LVNGYWSNLYVRTNLINLYANGGDGGD 178

Query: 105 VDARK---VFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYA 161
            D ++   +FD++P  N+  +N++L+GY   G    AR +FD M ER+V +W  M+ G+A
Sbjct: 179 FDLKRALYLFDEMPDSNVVGWNSLLAGYVRRGDFDGARKVFDEMPERNVRTWTIMVAGFA 238

Query: 162 KSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSN-- 219
           ++G  +  L  +  +RR  +  ++ +    L+ C +L +L L + +HG V  T    +  
Sbjct: 239 QNGQCKLALSLFDQMRRAGVELDQVALVAALSACAELGDLTLGKWIHGYVERTWRSRHLP 298

Query: 220 --VVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEM 277
             V ++++++  YA CG +  A +LF+E   R+ ++W+++++G+AK              
Sbjct: 299 VLVSLNNALIHMYASCGAMDLAYKLFEEIPQRNTVSWSSIITGFAK-------------- 344

Query: 278 PEKNPVSWTTLIAGYTRNGLGQKALELFTRMMIL---RIRPNQHTFSSCLCACASIVSLK 334
                             G G +A+ +F  M+      +RP++ TF   L AC+    + 
Sbjct: 345 -----------------QGCGVEAIRIFQLMLCSGQNEVRPDEITFIGALTACSHAGLIS 387

Query: 335 HGKQVHGFLIRTNFRSNTIV-----MSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNT 389
            G +    L ++  ++  ++        ++D+ S+ G L +   + +    K N+ +W  
Sbjct: 388 DGIR----LFQSMHKTFGVIPQIEHYGCMVDLLSRAGLLTEALSLIESMPMKPNNAVWGA 443

Query: 390 MISALTQHGYDE 401
           ++S    H  DE
Sbjct: 444 LLSGCRLHKNDE 455



 Score = 93.2 bits (230), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 80/348 (22%), Positives = 138/348 (39%), Gaps = 76/348 (21%)

Query: 185 EFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFD 244
           +F F+ +L  CV    L  T   H Q++V+GF     I + ++  Y   G L  A+++F+
Sbjct: 28  QFIFS-VLKSCVSFRNLAKT---HAQIVVSGFSQKNYILNHLLSLYISFGSLGSAQKVFE 83

Query: 245 ETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALEL 304
           +  A     W                                 +I G+TR+   +K++EL
Sbjct: 84  DITAPSTTVW-------------------------------NQIIKGHTRSKTSKKSIEL 112

Query: 305 FTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSK 364
           F RM +  +  N  T+S  L AC      + G+Q+HG ++   + SN  V ++LI++Y+ 
Sbjct: 113 FKRMTLAGVEANGFTYSFLLSACVRSRLFREGEQIHGRVLVNGYWSNLYVRTNLINLYAN 172

Query: 365 CGCLND------------------------------------GRQVFDLTDNKENSMLWN 388
            G   D                                     R+VFD    + N   W 
Sbjct: 173 GGDGGDFDLKRALYLFDEMPDSNVVGWNSLLAGYVRRGDFDGARKVFDEMPER-NVRTWT 231

Query: 389 TMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGL---TYFESM 445
            M++   Q+G  + A+ LF  M R+ V+ D++ L   L+AC   G +  G     Y E  
Sbjct: 232 IMVAGFAQNGQCKLALSLFDQMRRAGVELDQVALVAALSACAELGDLTLGKWIHGYVERT 291

Query: 446 THDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNAL 493
                +      +  LI + A  G  D      E++P + ++  W+++
Sbjct: 292 WRSRHLPVLVSLNNALIHMYASCGAMDLAYKLFEEIP-QRNTVSWSSI 338



 Score = 69.3 bits (168), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 55/205 (26%), Positives = 97/205 (47%), Gaps = 23/205 (11%)

Query: 31  GQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLT--QRKTPTT 88
           GQ   A+S  D + + G+ L    L   L  CAE   L LGK +H +++ T   R  P  
Sbjct: 241 GQCKLALSLFDQMRRAGVELDQVALVAALSACAELGDLTLGKWIHGYVERTWRSRHLPVL 300

Query: 89  F-LSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLF----- 142
             L+N LI MY  CG+   A K+F++IP +N  S++++++G+A  G    A  +F     
Sbjct: 301 VSLNNALIHMYASCGAMDLAYKLFEEIPQRNTVSWSSIITGFAKQGCGVEAIRIFQLMLC 360

Query: 143 --DNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRR----------FSISCNEFSFAG 190
              N    D +++   +   + +G + +G++ ++ + +          +    +  S AG
Sbjct: 361 SGQNEVRPDEITFIGALTACSHAGLISDGIRLFQSMHKTFGVIPQIEHYGCMVDLLSRAG 420

Query: 191 ILTICVKLEE---LKLTRQVHGQVL 212
           +LT  + L E   +K    V G +L
Sbjct: 421 LLTEALSLIESMPMKPNNAVWGALL 445


>gi|15226879|ref|NP_181048.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75099187|sp|O64766.1|PP185_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g35030, mitochondrial; Flags: Precursor
 gi|3033399|gb|AAC12843.1| hypothetical protein [Arabidopsis thaliana]
 gi|209414526|gb|ACI46503.1| At2g35030 [Arabidopsis thaliana]
 gi|330253957|gb|AEC09051.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 627

 Score =  296 bits (757), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 167/530 (31%), Positives = 289/530 (54%), Gaps = 30/530 (5%)

Query: 93  HLISMYFKCGSDVDARKVFDKIPV-KNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVV 151
           H+I+ Y K G   +AR++FD++   KN+ ++  M+SGY     +  A  LF  M ER+VV
Sbjct: 82  HVITGYIKLGDMREARELFDRVDSRKNVVTWTAMVSGYLRSKQLSIAEMLFQEMPERNVV 141

Query: 152 SWNTMIIGYAKSGAVEEGLK-FYKVLRRFSISCNEFSFA----GILTICVKLEELKLTRQ 206
           SWNTMI GYA+SG +++ L+ F ++  R  +S N    A    G +   + L E    R 
Sbjct: 142 SWNTMIDGYAQSGRIDKALELFDEMPERNIVSWNSMVKALVQRGRIDEAMNLFERMPRRD 201

Query: 207 V-HGQVLVTGFLSN-----------------VVISSSIVDAYAKCGELSDARRLFDETDA 248
           V     +V G   N                 ++  ++++  YA+   + +A +LF     
Sbjct: 202 VVSWTAMVDGLAKNGKVDEARRLFDCMPERNIISWNAMITGYAQNNRIDEADQLFQVMPE 261

Query: 249 RDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRM 308
           RD  +W TM++G+ +  +M  A  LF+ MPEKN +SWTT+I GY  N   ++AL +F++M
Sbjct: 262 RDFASWNTMITGFIRNREMNKACGLFDRMPEKNVISWTTMITGYVENKENEEALNVFSKM 321

Query: 309 MILR---IRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKC 365
             LR   ++PN  T+ S L AC+ +  L  G+Q+H  + ++  + N IV S+L++MYSK 
Sbjct: 322 --LRDGSVKPNVGTYVSILSACSDLAGLVEGQQIHQLISKSVHQKNEIVTSALLNMYSKS 379

Query: 366 GCLNDGRQVFDLTDNKENSML-WNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAV 424
           G L   R++FD     +  ++ WN+MI+    HG+ ++AI +++ M +   KP  +T   
Sbjct: 380 GELIAARKMFDNGLVCQRDLISWNSMIAVYAHHGHGKEAIEMYNQMRKHGFKPSAVTYLN 439

Query: 425 ILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYE 484
           +L AC+H+GLV++G+ +F+ +  D  +   +EH+ CL++L  +AG    + N +      
Sbjct: 440 LLFACSHAGLVEKGMEFFKDLVRDESLPLREEHYTCLVDLCGRAGRLKDVTNFINCDDAR 499

Query: 485 HDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVR 544
                + A+   C +H  + + ++VV ++++     + T+ L+S+IY+A GK     ++R
Sbjct: 500 LSRSFYGAILSACNVHNEVSIAKEVVKKVLETGSDDAGTYVLMSNIYAANGKREEAAEMR 559

Query: 545 QLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQM 594
             + E+  KK+   SW+++  + H F V D  HP  + L S+L  L  +M
Sbjct: 560 MKMKEKGLKKQPGCSWVKVGKQNHLFVVGDKSHPQFEALDSILSDLRNKM 609


>gi|242079983|ref|XP_002444760.1| hypothetical protein SORBIDRAFT_07g027560 [Sorghum bicolor]
 gi|241941110|gb|EES14255.1| hypothetical protein SORBIDRAFT_07g027560 [Sorghum bicolor]
          Length = 650

 Score =  296 bits (757), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 171/557 (30%), Positives = 275/557 (49%), Gaps = 52/557 (9%)

Query: 51  PAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKV 110
           P  +LA   + C E         +        R  P +     L+ +  + G+  D R +
Sbjct: 37  PHPSLAIFSRLCVEGPFPAALALLPDLAAAGLRADPVSL--TRLVKLCVRHGTAGDGRLI 94

Query: 111 FDKIPVKN------------LFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMII 158
              +                +F  N+++S YA  G++  A  LFD M ER+VV+W T++ 
Sbjct: 95  HRHVEAHGQLSHYSGGAGGGIFVSNSLVSMYAKFGLLDDALRLFDRMPERNVVTWTTVVA 154

Query: 159 GYAKS-GAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFL 217
             A + G  EE L+F   + R  ++ N ++F+ +L  C     L     +H   +  G  
Sbjct: 155 ALANADGRKEEALRFLVAMWRDGVAPNAYTFSSVLGACGTPGVLA---ALHASTVKVGLD 211

Query: 218 SNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEM 277
           S+V + SS++DAY K G+L   RR+FDE   RD++ W ++++G+A+ GD           
Sbjct: 212 SDVFVRSSLIDAYMKLGDLDGGRRVFDEMVTRDLVVWNSIIAGFAQSGD----------- 260

Query: 278 PEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGK 337
                               G  A+ELF RM       NQ T +S L AC  +V L+ G+
Sbjct: 261 --------------------GVGAIELFMRMKDAGFSANQGTLTSVLRACTGMVMLEAGR 300

Query: 338 QVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQH 397
           QVH  +++  +  + I+ ++L+DMY KCG L D   +F     + + + W+TMIS L Q+
Sbjct: 301 QVHAHVLK--YERDLILHNALLDMYCKCGSLEDAEALFHRMPQR-DVISWSTMISGLAQN 357

Query: 398 GYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEH 457
           G   +A+R+F  M    V P++IT+  +L AC+H+GLV++G  YF SM    GI P +EH
Sbjct: 358 GKSAEALRVFDLMKSEGVAPNRITMVGVLFACSHAGLVEDGWYYFRSMKKLFGIQPEREH 417

Query: 458 HACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQN 517
           H C+++LL +AG  D+ +  +  M  E D+ +W  L G CR+H + ++      +++   
Sbjct: 418 HNCMVDLLGRAGKLDEAVEFIRDMNLEPDAVIWRTLLGACRMHKSGNLAAYAAREILKLE 477

Query: 518 PQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLH 577
           P       LLS+ Y+ L +    EK  + + +R  KKE   SWIE+E  VH F   D  H
Sbjct: 478 PDDQGARVLLSNTYADLRQWTDAEKSWKAMRDRGMKKEPGRSWIELEKHVHVFIAGDLSH 537

Query: 578 PMRDVLYSVLEQLAGQM 594
           P  D +   L +L G++
Sbjct: 538 PCSDTIVQELNRLIGRI 554


>gi|15217517|ref|NP_174603.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75168867|sp|Q9C501.1|PPR70_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g33350
 gi|12322383|gb|AAG51215.1|AC051630_12 unknown protein; 15445-13829 [Arabidopsis thaliana]
 gi|12322567|gb|AAG51281.1|AC027035_4 PPR-repeat protein, putative [Arabidopsis thaliana]
 gi|332193465|gb|AEE31586.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 538

 Score =  296 bits (757), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 158/464 (34%), Positives = 260/464 (56%), Gaps = 9/464 (1%)

Query: 135 MKHARNLFDNMAERDVVSWNTMIIGYAKSGAVE--EGLKFYKVLRRFSIS-CNEFSFAGI 191
           + +AR +FD  +  +   +  ++  Y+ S  +       F++++   S+   N F +  +
Sbjct: 73  LSYARFIFDRFSFPNTHLYAAVLTAYSSSLPLHASSAFSFFRLMVNRSVPRPNHFIYPLV 132

Query: 192 LTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAK-CGELSDARRLFDETDARD 250
           L     L     T  VH  +  +GF   VV+ ++++ +YA     ++ AR+LFDE   R+
Sbjct: 133 LKSTPYLSSAFSTPLVHTHLFKSGFHLYVVVQTALLHSYASSVSHITLARQLFDEMSERN 192

Query: 251 VLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMM- 309
           V++WT M+SGYA+ GD+ +A  LF +MPE++  SW  ++A  T+NGL  +A+ LF RM+ 
Sbjct: 193 VVSWTAMLSGYARSGDISNAVALFEDMPERDVPSWNAILAACTQNGLFLEAVSLFRRMIN 252

Query: 310 ILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLN 369
              IRPN+ T    L ACA   +L+  K +H F  R +  S+  V +SL+D+Y KCG L 
Sbjct: 253 EPSIRPNEVTVVCVLSACAQTGTLQLAKGIHAFAYRRDLSSDVFVSNSLVDLYGKCGNLE 312

Query: 370 DGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVR---SSVKPDKITLAVIL 426
           +   VF +  +K++   WN+MI+    HG  E+AI +F +M++   + +KPD IT   +L
Sbjct: 313 EASSVFKMA-SKKSLTAWNSMINCFALHGRSEEAIAVFEEMMKLNINDIKPDHITFIGLL 371

Query: 427 NACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHD 486
           NACTH GLV +G  YF+ MT+  GI P  EH+ CLI+LL +AG  D+ +  +  M  + D
Sbjct: 372 NACTHGGLVSKGRGYFDLMTNRFGIEPRIEHYGCLIDLLGRAGRFDEALEVMSTMKMKAD 431

Query: 487 SYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQL 546
             +W +L   C+IHG++D+    V  L+  NP +     +++++Y  +G      + R++
Sbjct: 432 EAIWGSLLNACKIHGHLDLAEVAVKNLVALNPNNGGYVAMMANLYGEMGNWEEARRARKM 491

Query: 547 INERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQL 590
           I  +   K    S IEI+N+VH F   D  HP  + +Y +L+ L
Sbjct: 492 IKHQNAYKPPGWSRIEIDNEVHQFYSLDKSHPETEEIYMILDSL 535



 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 101/401 (25%), Positives = 171/401 (42%), Gaps = 36/401 (8%)

Query: 10  INRKNLPNNCLIQSFLSLISKG---QLSEAISSLDLLAQRGIRLPAETL-AFILQQCAES 65
            +R + PN  L  + L+  S       S A S   L+  R +  P   +   +L+     
Sbjct: 80  FDRFSFPNTHLYAAVLTAYSSSLPLHASSAFSFFRLMVNRSVPRPNHFIYPLVLKSTPYL 139

Query: 66  KSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVD-ARKVFDKIPVKNLFSYNN 124
            S      VH HL           +   L+  Y    S +  AR++FD++  +N+ S+  
Sbjct: 140 SSAFSTPLVHTHL-FKSGFHLYVVVQTALLHSYASSVSHITLARQLFDEMSERNVVSWTA 198

Query: 125 MLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLK-FYKVLRRFSISC 183
           MLSGYA  G + +A  LF++M ERDV SWN ++    ++G   E +  F +++   SI  
Sbjct: 199 MLSGYARSGDISNAVALFEDMPERDVPSWNAILAACTQNGLFLEAVSLFRRMINEPSIRP 258

Query: 184 NEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLF 243
           NE +   +L+ C +   L+L + +H         S+V +S+S+VD Y KCG L +A  +F
Sbjct: 259 NEVTVVCVLSACAQTGTLQLAKGIHAFAYRRDLSSDVFVSNSLVDLYGKCGNLEEASSVF 318

Query: 244 DETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALE 303
                + +  W +M++ +A  G  E A  +F EM + N                      
Sbjct: 319 KMASKKSLTAWNSMINCFALHGRSEEAIAVFEEMMKLN---------------------- 356

Query: 304 LFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLI-RTNFRSNTIVMSSLIDMY 362
                 I  I+P+  TF   L AC     +  G+     +  R            LID+ 
Sbjct: 357 ------INDIKPDHITFIGLLNACTHGGLVSKGRGYFDLMTNRFGIEPRIEHYGCLIDLL 410

Query: 363 SKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQA 403
            + G  ++  +V      K +  +W ++++A   HG+ + A
Sbjct: 411 GRAGRFDEALEVMSTMKMKADEAIWGSLLNACKIHGHLDLA 451


>gi|297719939|ref|NP_001172331.1| Os01g0355000 [Oryza sativa Japonica Group]
 gi|53791352|dbj|BAD52598.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|215768699|dbj|BAH00928.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|255673214|dbj|BAH91061.1| Os01g0355000 [Oryza sativa Japonica Group]
          Length = 877

 Score =  296 bits (757), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 183/598 (30%), Positives = 299/598 (50%), Gaps = 71/598 (11%)

Query: 13  KNLPNNCLIQSFLSLIS----KGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSL 68
           + +P++ ++ S+ +LIS     G    AI  L  +   G+     TL+ IL+ C+ + + 
Sbjct: 261 EKMPDSDVV-SWNALISGCVLNGHDHRAIELLLQMKYSGLVPNVFTLSSILKACSGAGAF 319

Query: 69  KLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSG 128
            LG+++H                        K  +D D     D I V        ++  
Sbjct: 320 DLGRQIH--------------------GFMIKANADSD-----DYIGV-------GLVDM 347

Query: 129 YANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSF 188
           YA    +  AR +FD M  RD++  N +I G +  G  +E L  +  LR+  +  N  + 
Sbjct: 348 YAKNHFLDDARKVFDWMFHRDLILCNALISGCSHGGRHDEALSLFYELRKEGLGVNRTTL 407

Query: 189 AGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDA 248
           A +L     LE    TRQVH   +  GF+ +  + + ++D+Y KC  LSDA R+F+E  +
Sbjct: 408 AAVLKSTASLEAASTTRQVHALAVKIGFIFDAHVVNGLIDSYWKCSCLSDANRVFEECSS 467

Query: 249 RDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRM 308
                           GD+               ++ T++I   ++   G+ A++LF  M
Sbjct: 468 ----------------GDI---------------IACTSMITALSQCDHGEGAIKLFMEM 496

Query: 309 MILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCL 368
           +   + P+    SS L ACAS+ + + GKQVH  LI+  F S+    ++L+  Y+KCG +
Sbjct: 497 LRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAHLIKRQFMSDAFAGNALVYTYAKCGSI 556

Query: 369 NDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNA 428
            D    F     +   + W+ MI  L QHG+ ++A+ LF  MV   + P+ IT+  +L A
Sbjct: 557 EDAELAFSSLPER-GVVSWSAMIGGLAQHGHGKRALELFGRMVDEGINPNHITMTSVLCA 615

Query: 429 CTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSY 488
           C H+GLV E   YF SM    GI   +EH++C+I+LL +AG  D  M  +  MP++ ++ 
Sbjct: 616 CNHAGLVDEAKRYFNSMKEMFGIDRTEEHYSCMIDLLGRAGKLDDAMELVNSMPFQANAS 675

Query: 489 LWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLIN 548
           +W AL G  R+H + ++G+   ++L    P+ S TH LL++ Y++ G    V KVR+L+ 
Sbjct: 676 IWGALLGASRVHKDPELGKLAAEKLFILEPEKSGTHVLLANTYASAGMWNEVAKVRKLMK 735

Query: 549 ERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQMGEDA--PSLDAD 604
           +   KKE A+SWIE+++KVH F V D  HPM   +Y+ L +L   M +    P++D D
Sbjct: 736 DSNIKKEPAMSWIEVKDKVHTFIVGDKSHPMTKEIYAKLVELGDLMSKAGFVPNVDVD 793



 Score =  158 bits (400), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 90/312 (28%), Positives = 158/312 (50%), Gaps = 33/312 (10%)

Query: 118 NLFSYNNMLSGYANLGMMKHARNLFDNM-AERDVVSWNTMIIGYAKSGAVEEGLKFYKVL 176
           ++F  N +++ Y   G M  AR +F+   +ER+ VSWN ++  Y K+    + ++ +  +
Sbjct: 134 DVFVANALVAMYGGFGFMDDARRVFNEADSERNAVSWNGLMSAYVKNDQCGDAIQVFGEM 193

Query: 177 RRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGEL 236
               I   EF F+ ++  C     ++  RQVH  V+  G+                    
Sbjct: 194 VWSGIQPTEFGFSCVVNACTGSRNIEAGRQVHAMVVRMGY-------------------- 233

Query: 237 SDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNG 296
                       +DV T   +V  Y K+G ++ AS +F +MP+ + VSW  LI+G   NG
Sbjct: 234 -----------DKDVFTANALVDMYMKMGRVDIASVIFEKMPDSDVVSWNALISGCVLNG 282

Query: 297 LGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMS 356
              +A+EL  +M    + PN  T SS L AC+   +   G+Q+HGF+I+ N  S+  +  
Sbjct: 283 HDHRAIELLLQMKYSGLVPNVFTLSSILKACSGAGAFDLGRQIHGFMIKANADSDDYIGV 342

Query: 357 SLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVK 416
            L+DMY+K   L+D R+VFD   +++  +L N +IS  +  G  ++A+ LF+++ +  + 
Sbjct: 343 GLVDMYAKNHFLDDARKVFDWMFHRD-LILCNALISGCSHGGRHDEALSLFYELRKEGLG 401

Query: 417 PDKITLAVILNA 428
            ++ TLA +L +
Sbjct: 402 VNRTTLAAVLKS 413



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 129/546 (23%), Positives = 237/546 (43%), Gaps = 75/546 (13%)

Query: 5   FSPRGINRKNLPNNCLIQSFLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAE 64
           F+     R  +  N L+ ++   +   Q  +AI     +   GI+      + ++  C  
Sbjct: 158 FNEADSERNAVSWNGLMSAY---VKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTG 214

Query: 65  SKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNN 124
           S++++ G++VH                    +M  + G D            K++F+ N 
Sbjct: 215 SRNIEAGRQVH--------------------AMVVRMGYD------------KDVFTANA 242

Query: 125 MLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCN 184
           ++  Y  +G +  A  +F+ M + DVVSWN +I G   +G     ++    ++   +  N
Sbjct: 243 LVDMYMKMGRVDIASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQMKYSGLVPN 302

Query: 185 EFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFD 244
            F+ + IL  C       L RQ+HG ++     S+  I   +VD YAK   L DAR++FD
Sbjct: 303 VFTLSSILKACSGAGAFDLGRQIHGFMIKANADSDDYIGVGLVDMYAKNHFLDDARKVFD 362

Query: 245 ETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALEL 304
               RD++    ++SG +  G  + A  LF E+                + GLG      
Sbjct: 363 WMFHRDLILCNALISGCSHGGRHDEALSLFYEL---------------RKEGLGV----- 402

Query: 305 FTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSK 364
                      N+ T ++ L + AS+ +    +QVH   ++  F  +  V++ LID Y K
Sbjct: 403 -----------NRTTLAAVLKSTASLEAASTTRQVHALAVKIGFIFDAHVVNGLIDSYWK 451

Query: 365 CGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAV 424
           C CL+D  +VF+   + +  +   +MI+AL+Q  + E AI+LF +M+R  ++PD   L+ 
Sbjct: 452 CSCLSDANRVFEECSSGD-IIACTSMITALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSS 510

Query: 425 ILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYE 484
           +LNAC      ++G      +      + +      L+   A+ G  +        +P E
Sbjct: 511 LLNACASLSAYEQGKQVHAHLIKRQ-FMSDAFAGNALVYTYAKCGSIEDAELAFSSLP-E 568

Query: 485 HDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQ--NPQSSATHGLLSSIYSALGKGRLVEK 542
                W+A+ G    HG+     ++  +++D+  NP     H  ++S+  A     LV++
Sbjct: 569 RGVVSWSAMIGGLAQHGHGKRALELFGRMVDEGINPN----HITMTSVLCACNHAGLVDE 624

Query: 543 VRQLIN 548
            ++  N
Sbjct: 625 AKRYFN 630



 Score =  149 bits (377), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 103/388 (26%), Positives = 180/388 (46%), Gaps = 70/388 (18%)

Query: 52  AETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVF 111
           A T++  L + A +++L  G   HLH  L +  +  +F  NHLIS Y KC     AR+VF
Sbjct: 4   AGTISQQLTRYAAAQALLPG--AHLHASLLKSGSLASF-RNHLISFYSKCRRPCCARRVF 60

Query: 112 DKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLK 171
                                          D + +   VSW++++  Y+ +G     ++
Sbjct: 61  -------------------------------DEIPDPCHVSWSSLVTAYSNNGLPRSAIQ 89

Query: 172 FYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYA 231
            +  +R   + CNEF+   +L  CV   + +L  QVH   + TGF S+V +++++V  Y 
Sbjct: 90  AFHGMRAEGVCCNEFALPVVLK-CVP--DARLGAQVHAMAMATGFGSDVFVANALVAMYG 146

Query: 232 KCGELSDARRLFDETDA-RDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIA 290
             G + DARR+F+E D+ R+ ++W  ++S Y K                           
Sbjct: 147 GFGFMDDARRVFNEADSERNAVSWNGLMSAYVK--------------------------- 179

Query: 291 GYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRS 350
               N     A+++F  M+   I+P +  FS  + AC    +++ G+QVH  ++R  +  
Sbjct: 180 ----NDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIEAGRQVHAMVVRMGYDK 235

Query: 351 NTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDM 410
           +    ++L+DMY K G ++    +F+   + +  + WN +IS    +G+D +AI L   M
Sbjct: 236 DVFTANALVDMYMKMGRVDIASVIFEKMPDSD-VVSWNALISGCVLNGHDHRAIELLLQM 294

Query: 411 VRSSVKPDKITLAVILNACTHSGLVQEG 438
             S + P+  TL+ IL AC+ +G    G
Sbjct: 295 KYSGLVPNVFTLSSILKACSGAGAFDLG 322



 Score =  119 bits (298), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 71/246 (28%), Positives = 129/246 (52%), Gaps = 5/246 (2%)

Query: 257 MVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPN 316
           ++S Y+K      A ++F+E+P+   VSW++L+  Y+ NGL + A++ F  M    +  N
Sbjct: 43  LISFYSKCRRPCCARRVFDEIPDPCHVSWSSLVTAYSNNGLPRSAIQAFHGMRAEGVCCN 102

Query: 317 QHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFD 376
           +      L     +   + G QVH   + T F S+  V ++L+ MY   G ++D R+VF+
Sbjct: 103 EFALPVVL---KCVPDARLGAQVHAMAMATGFGSDVFVANALVAMYGGFGFMDDARRVFN 159

Query: 377 LTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQ 436
             D++ N++ WN ++SA  ++     AI++F +MV S ++P +   + ++NACT S  ++
Sbjct: 160 EADSERNAVSWNGLMSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIE 219

Query: 437 EGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGV 496
            G     +M   +G   +      L+++  + G  D      EKMP + D   WNAL   
Sbjct: 220 AG-RQVHAMVVRMGYDKDVFTANALVDMYMKMGRVDIASVIFEKMP-DSDVVSWNALISG 277

Query: 497 CRIHGN 502
           C ++G+
Sbjct: 278 CVLNGH 283


>gi|15234831|ref|NP_194799.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75208664|sp|Q9SUH6.1|PP341_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g30700; AltName: Full=Protein DYW9
 gi|5725434|emb|CAB52443.1| putative protein [Arabidopsis thaliana]
 gi|7269971|emb|CAB79788.1| putative protein [Arabidopsis thaliana]
 gi|332660398|gb|AEE85798.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 792

 Score =  296 bits (757), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 178/544 (32%), Positives = 275/544 (50%), Gaps = 73/544 (13%)

Query: 123 NNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSIS 182
           +N++  Y     ++ AR +FD M E+D + WNTMI GY K+    E ++ ++ L   + S
Sbjct: 158 SNIVKMYFKFWRVEDARKVFDRMPEKDTILWNTMISGYRKNEMYVESIQVFRDL--INES 215

Query: 183 CNEF---SFAGILTICVKLEELKLTRQVHG----------QVLVTGFLS----------- 218
           C      +   IL    +L+EL+L  Q+H             ++TGF+S           
Sbjct: 216 CTRLDTTTLLDILPAVAELQELRLGMQIHSLATKTGCYSHDYVLTGFISLYSKCGKIKMG 275

Query: 219 ----------NVVISSSIVDAYAKCGELSDARRLFDE---TDAR---DVLTWTTMVSG-- 260
                     ++V  ++++  Y   GE   +  LF E   + AR     L     VSG  
Sbjct: 276 SALFREFRKPDIVAYNAMIHGYTSNGETELSLSLFKELMLSGARLRSSTLVSLVPVSGHL 335

Query: 261 ----------------------------YAKLGDMESASKLFNEMPEKNPVSWTTLIAGY 292
                                       Y+KL ++ESA KLF+E PEK+  SW  +I+GY
Sbjct: 336 MLIYAIHGYCLKSNFLSHASVSTALTTVYSKLNEIESARKLFDESPEKSLPSWNAMISGY 395

Query: 293 TRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNT 352
           T+NGL + A+ LF  M      PN  T +  L ACA + +L  GK VH  +  T+F S+ 
Sbjct: 396 TQNGLTEDAISLFREMQKSEFSPNPVTITCILSACAQLGALSLGKWVHDLVRSTDFESSI 455

Query: 353 IVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVR 412
            V ++LI MY+KCG + + R++FDL   K+N + WNTMIS    HG  ++A+ +F++M+ 
Sbjct: 456 YVSTALIGMYAKCGSIAEARRLFDLM-TKKNEVTWNTMISGYGLHGQGQEALNIFYEMLN 514

Query: 413 SSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSD 472
           S + P  +T   +L AC+H+GLV+EG   F SM H  G  P+ +H+AC++++L +AG   
Sbjct: 515 SGITPTPVTFLCVLYACSHAGLVKEGDEIFNSMIHRYGFEPSVKHYACMVDILGRAGHLQ 574

Query: 473 QLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYS 532
           + +  +E M  E  S +W  L G CRIH + ++ R V ++L + +P +   H LLS+I+S
Sbjct: 575 RALQFIEAMSIEPGSSVWETLLGACRIHKDTNLARTVSEKLFELDPDNVGYHVLLSNIHS 634

Query: 533 ALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAG 592
           A         VRQ   +R+  K    + IEI    H F+  D  HP    +Y  LE+L G
Sbjct: 635 ADRNYPQAATVRQTAKKRKLAKAPGYTLIEIGETPHVFTSGDQSHPQVKEIYEKLEKLEG 694

Query: 593 QMGE 596
           +M E
Sbjct: 695 KMRE 698



 Score =  132 bits (333), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 110/451 (24%), Positives = 183/451 (40%), Gaps = 103/451 (22%)

Query: 89  FLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAER 148
            L ++++ MYFK     DARKVFD++P K+   +N M+SGY    M   +  +F ++   
Sbjct: 155 LLGSNIVKMYFKFWRVEDARKVFDRMPEKDTILWNTMISGYRKNEMYVESIQVFRDLINE 214

Query: 149 DVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVH 208
                +T                               +   IL    +L+EL+L  Q+H
Sbjct: 215 SCTRLDTT------------------------------TLLDILPAVAELQELRLGMQIH 244

Query: 209 GQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDME 268
                TG  S+  + +  +  Y+KCG++     LF E    D++ +  M+ GY       
Sbjct: 245 SLATKTGCYSHDYVLTGFISLYSKCGKIKMGSALFREFRKPDIVAYNAMIHGY------- 297

Query: 269 SASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACA 328
                                   T NG  + +L LF  +M+   R    T  S +    
Sbjct: 298 ------------------------TSNGETELSLSLFKELMLSGARLRSSTLVSLVPVSG 333

Query: 329 SIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSML-W 387
            ++ +     +HG+ +++NF S+  V ++L  +YSK   +   R++FD  ++ E S+  W
Sbjct: 334 HLMLI---YAIHGYCLKSNFLSHASVSTALTTVYSKLNEIESARKLFD--ESPEKSLPSW 388

Query: 388 NTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTH 447
           N MIS  TQ+G  E AI LF +M +S   P+ +T+  IL+AC   G +  G        H
Sbjct: 389 NAMISGYTQNGLTEDAISLFREMQKSEFSPNPVTITCILSACAQLGALSLG-----KWVH 443

Query: 448 DLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGR 507
           DL                            +    +E   Y+  AL G+    G+I   R
Sbjct: 444 DL----------------------------VRSTDFESSIYVSTALIGMYAKCGSIAEAR 475

Query: 508 KVVDQLIDQNPQSSATHGLLSSIYSALGKGR 538
           ++ D +  +N     T   + S Y   G+G+
Sbjct: 476 RLFDLMTKKN---EVTWNTMISGYGLHGQGQ 503



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 80/307 (26%), Positives = 145/307 (47%), Gaps = 32/307 (10%)

Query: 130 ANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFS-ISCNEFSF 188
           ++LG + +AR++F ++   DV  +N ++ G++ + +    L  +  LR+ + +  N  ++
Sbjct: 63  SDLGAIYYARDIFLSVQRPDVFLFNVLMRGFSVNESPHSSLSVFAHLRKSTDLKPNSSTY 122

Query: 189 AGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDA 248
           A  ++      + +  R +HGQ +V G  S +++ S+IV  Y K   + DAR++FD    
Sbjct: 123 AFAISAASGFRDDRAGRVIHGQAVVDGCDSELLLGSNIVKMYFKFWRVEDARKVFDRMPE 182

Query: 249 RDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRM 308
           +D + W TM+SGY K           NEM  ++   +  LI             E  TR+
Sbjct: 183 KDTILWNTMISGYRK-----------NEMYVESIQVFRDLIN------------ESCTRL 219

Query: 309 MILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCL 368
                  +  T    L A A +  L+ G Q+H    +T   S+  V++  I +YSKCG +
Sbjct: 220 -------DTTTLLDILPAVAELQELRLGMQIHSLATKTGCYSHDYVLTGFISLYSKCGKI 272

Query: 369 NDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNA 428
             G  +F     K + + +N MI   T +G  E ++ LF +++ S  +    TL  ++  
Sbjct: 273 KMGSALFR-EFRKPDIVAYNAMIHGYTSNGETELSLSLFKELMLSGARLRSSTLVSLVPV 331

Query: 429 CTHSGLV 435
             H  L+
Sbjct: 332 SGHLMLI 338



 Score = 38.5 bits (88), Expect = 9.1,   Method: Compositional matrix adjust.
 Identities = 34/168 (20%), Positives = 76/168 (45%), Gaps = 14/168 (8%)

Query: 332 SLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMI 391
           S+ H  Q H  +I   FR++  +++ L    S  G +   R +F L+  + +  L+N ++
Sbjct: 32  SISHLAQTHAQIILHGFRNDISLLTKLTQRLSDLGAIYYARDIF-LSVQRPDVFLFNVLM 90

Query: 392 SALTQHGYDEQAIRLFHDMVRSS-VKPDKITLAVILNACT-----HSGLVQEGLTYFESM 445
              + +     ++ +F  + +S+ +KP+  T A  ++A +      +G V  G    +  
Sbjct: 91  RGFSVNESPHSSLSVFAHLRKSTDLKPNSSTYAFAISAASGFRDDRAGRVIHGQAVVDGC 150

Query: 446 THDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNAL 493
             +L +  N      ++++  +    +      ++MP E D+ LWN +
Sbjct: 151 DSELLLGSN------IVKMYFKFWRVEDARKVFDRMP-EKDTILWNTM 191


>gi|357112489|ref|XP_003558041.1| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
           mitochondrial-like [Brachypodium distachyon]
          Length = 706

 Score =  296 bits (757), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 163/551 (29%), Positives = 278/551 (50%), Gaps = 74/551 (13%)

Query: 86  PTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNM 145
           P+      L+  Y + G   DA ++F ++P +N  +Y  +L G+ + G +  AR LFD M
Sbjct: 110 PSVVSFTSLLRGYVRHGLLADAIRLFHQMPERNHVTYTVLLGGFLDAGRVNEARKLFDEM 169

Query: 146 AERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTR 205
            ++DVV+   M+ GY ++G + E    +  + +                           
Sbjct: 170 PDKDVVARTAMLSGYCQAGRITEARALFDEMPK--------------------------- 202

Query: 206 QVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLG 265
                        NVV  ++++  YA+ G++  AR+LF+    R+ ++WT M+ GY + G
Sbjct: 203 ------------RNVVSWTAMISGYAQNGKVILARKLFEVMPDRNEVSWTAMLVGYIQAG 250

Query: 266 DMESASKLFNEMPEKNPV--------------------------------SWTTLIAGYT 293
            +E A  LFN MP+ +PV                                +W+ +I  Y 
Sbjct: 251 HVEDAEDLFNAMPD-HPVAACNAMMVGFGQHGMVDAAKAMFERMCARDDGTWSAMIKVYE 309

Query: 294 RNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTI 353
           +N    +AL  F  M+   IRPN  +F S L  CA++ +  +G+++H  ++R +F ++  
Sbjct: 310 QNEFLMEALSTFREMLCRGIRPNYTSFISILTVCAALATADYGRELHAAMLRCSFDTDVF 369

Query: 354 VMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRS 413
            +S+LI MY KCG L+  ++VF++ + K+  M WN+MI+   QHG  E+A+ +F D+  +
Sbjct: 370 AVSALITMYIKCGNLDKAKRVFNMFEPKDVVM-WNSMITGYAQHGLGEEALGIFDDLRLA 428

Query: 414 SVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQ 473
            + PD IT   +L AC+++G V+EG   F SM  +  I     H++C+++LL +AG  D+
Sbjct: 429 RMAPDGITYIGVLTACSYTGKVKEGREIFNSMGMNSSIRLGAAHYSCMVDLLGRAGLVDE 488

Query: 474 LMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSA 533
            ++ +  MP E D+ +W AL G CR+H N ++      +L++  P S+  + LLS IY++
Sbjct: 489 ALDLINNMPVEPDAIIWGALMGACRMHKNAEIAEVAAKKLLELEPGSAGPYVLLSHIYTS 548

Query: 534 LGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSL-HPMRDVLYSVLEQLAG 592
            G+      +R+ I+ R   K    SWIE    VH F+  D L HP   ++ ++LE+L G
Sbjct: 549 TGRWEDASDMRKFISSRNLNKSPGCSWIEYNKMVHLFTSGDVLSHPEHAIILNMLEELDG 608

Query: 593 QMGEDAPSLDA 603
            + E   S D 
Sbjct: 609 LLMESGYSADG 619



 Score =  131 bits (330), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 120/545 (22%), Positives = 224/545 (41%), Gaps = 112/545 (20%)

Query: 80  LTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHAR 139
           L     P    +N  I+   + G+   AR  FD +P++   SYN +++GY    +   A 
Sbjct: 9   LPSSTAPAVVAANARIAWLVRAGNIEGARAAFDAMPLRTTASYNALIAGYFRNHLPDAAL 68

Query: 140 NLFDNMAERDVVSWNTMIIGYA-------KSGAVEEGLKFYKVLRRFSISCNEFSFAGIL 192
            LF  M  RD+ S+N +I G +        + A    +     +  F+     +   G+L
Sbjct: 69  GLFHRMPSRDLGSYNALIAGLSLRRHTLPDAAAALASIPLPPSVVSFTSLLRGYVRHGLL 128

Query: 193 TICVKL-EELKLTRQVHGQVLVTGFLS-----------------NVVISSSIVDAYAKCG 234
              ++L  ++     V   VL+ GFL                  +VV  ++++  Y + G
Sbjct: 129 ADAIRLFHQMPERNHVTYTVLLGGFLDAGRVNEARKLFDEMPDKDVVARTAMLSGYCQAG 188

Query: 235 ELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTR 294
            +++AR LFDE   R+V++WT M+SGYA+ G +  A KLF  MP++N VSWT ++ GY +
Sbjct: 189 RITEARALFDEMPKRNVVSWTAMISGYAQNGKVILARKLFEVMPDRNEVSWTAMLVGYIQ 248

Query: 295 NGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIV 354
            G  + A +LF  M      P+ H  ++C                               
Sbjct: 249 AGHVEDAEDLFNAM------PD-HPVAAC------------------------------- 270

Query: 355 MSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSS 414
            ++++  + + G ++  + +F+    +++   W+ MI    Q+ +  +A+  F +M+   
Sbjct: 271 -NAMMVGFGQHGMVDAAKAMFERMCARDDGT-WSAMIKVYEQNEFLMEALSTFREMLCRG 328

Query: 415 VKPDKITLAVILNACTHSGLVQEGLTYFESM---THDLGIIPNQEHHACLIELLAQAGCS 471
           ++P+  +   IL  C        G     +M   + D  +       + LI +  + G  
Sbjct: 329 IRPNYTSFISILTVCAALATADYGRELHAAMLRCSFDTDVFAV----SALITMYIKCGNL 384

Query: 472 DQLMNQLEKMPYEHDSYLWNAL------HGV----------------------------- 496
           D+   ++  M    D  +WN++      HG+                             
Sbjct: 385 DK-AKRVFNMFEPKDVVMWNSMITGYAQHGLGEEALGIFDDLRLARMAPDGITYIGVLTA 443

Query: 497 CRIHGNIDMGRKVVDQL-IDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKE 555
           C   G +  GR++ + + ++ + +  A H   S +   LG+  LV++   LIN    + +
Sbjct: 444 CSYTGKVKEGREIFNSMGMNSSIRLGAAH--YSCMVDLLGRAGLVDEALDLINNMPVEPD 501

Query: 556 QAISW 560
            AI W
Sbjct: 502 -AIIW 505



 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 73/298 (24%), Positives = 122/298 (40%), Gaps = 36/298 (12%)

Query: 241 RLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQK 300
           R    + A  V+     ++   + G++E A   F+ MP +   S+  LIAGY RN L   
Sbjct: 7   RFLPSSTAPAVVAANARIAWLVRAGNIEGARAAFDAMPLRTTASYNALIAGYFRNHLPDA 66

Query: 301 ALELFTRM----------MILRIRPNQHTFSSCLCACASI---------VSLKHGKQVHG 341
           AL LF RM          +I  +   +HT      A ASI          SL  G   HG
Sbjct: 67  ALGLFHRMPSRDLGSYNALIAGLSLRRHTLPDAAAALASIPLPPSVVSFTSLLRGYVRHG 126

Query: 342 FL---IRTNFR---SNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALT 395
            L   IR   +    N +  + L+  +   G +N+ R++FD   +K+  +    M+S   
Sbjct: 127 LLADAIRLFHQMPERNHVTYTVLLGGFLDAGRVNEARKLFDEMPDKD-VVARTAMLSGYC 185

Query: 396 QHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQ 455
           Q G   +A  LF +M + +V    ++   +++    +G V      FE M        N+
Sbjct: 186 QAGRITEARALFDEMPKRNV----VSWTAMISGYAQNGKVILARKLFEVMPDR-----NE 236

Query: 456 EHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQL 513
                ++    QAG  +   +    MP +H     NA+      HG +D  + + +++
Sbjct: 237 VSWTAMLVGYIQAGHVEDAEDLFNAMP-DHPVAACNAMMVGFGQHGMVDAAKAMFERM 293



 Score = 66.2 bits (160), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 41/145 (28%), Positives = 76/145 (52%), Gaps = 5/145 (3%)

Query: 33  LSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSN 92
           L EA+S+   +  RGIR    +   IL  CA   +   G+ +H  +      T   F  +
Sbjct: 314 LMEALSTFREMLCRGIRPNYTSFISILTVCAALATADYGRELHAAMLRCSFDT-DVFAVS 372

Query: 93  HLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNM----AER 148
            LI+MY KCG+   A++VF+    K++  +N+M++GYA  G+ + A  +FD++       
Sbjct: 373 ALITMYIKCGNLDKAKRVFNMFEPKDVVMWNSMITGYAQHGLGEEALGIFDDLRLARMAP 432

Query: 149 DVVSWNTMIIGYAKSGAVEEGLKFY 173
           D +++  ++   + +G V+EG + +
Sbjct: 433 DGITYIGVLTACSYTGKVKEGREIF 457


>gi|359472776|ref|XP_002275546.2| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Vitis vinifera]
          Length = 896

 Score =  296 bits (757), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 177/613 (28%), Positives = 295/613 (48%), Gaps = 90/613 (14%)

Query: 10  INRKNLPNNCLIQSFLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLK 69
           ++R  +  N +I SF       + SEA++   L+   G+ L   T+A +L  C+  + L 
Sbjct: 258 VDRDMVSWNTMISSF---SQSDRFSEALAFFRLMVLEGVELDGVTIASVLPACSHLERLD 314

Query: 70  LGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGY 129
           +GK +H ++         +F+ + L+ MY  C      R+V                   
Sbjct: 315 VGKEIHAYVLRNNDLIENSFVGSALVDMYCNC------RQV------------------- 349

Query: 130 ANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLK-FYKVLRRFSISCNEFSF 188
                 +  R +FD++  R +  WN MI GYA++G  E+ L  F ++++   +  N  + 
Sbjct: 350 ------ESGRRVFDHILGRRIELWNAMISGYARNGLDEKALILFIEMIKVAGLLPNTTTM 403

Query: 189 AGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDA 248
           A ++  CV  E       +HG  +  GF  +  + ++++D Y++                
Sbjct: 404 ASVMPACVHCEAFSNKESIHGYAVKLGFKEDRYVQNALMDMYSR---------------- 447

Query: 249 RDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRM 308
                          +G M+ +  +F+ M  ++ VSW T+I GY  +G    AL L   M
Sbjct: 448 ---------------MGKMDISETIFDSMEVRDRVSWNTMITGYVLSGRYSNALVLLHEM 492

Query: 309 MILR-----------------IRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSN 351
             +                   +PN  T  + L  CA++ ++  GK++H + IR    S+
Sbjct: 493 QRMENTKDVKKDDNDDEKGGPYKPNAITLMTVLPGCAALAAIAKGKEIHAYAIRNMLASD 552

Query: 352 TIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMV 411
             V S+L+DMY+KCGCLN  R+VF+   NK N + WN +I A   HG  E+A+ LF +MV
Sbjct: 553 ITVGSALVDMYAKCGCLNLSRRVFNEMPNK-NVITWNVLIMACGMHGKGEEALELFKNMV 611

Query: 412 RSS-----VKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLA 466
             +      KP+++T   +  AC+HSGL+ EGL  F  M HD G+ P  +H+AC+++LL 
Sbjct: 612 AEAGRGGEAKPNEVTFITVFAACSHSGLISEGLNLFYRMKHDHGVEPTSDHYACVVDLLG 671

Query: 467 QAGCSDQLMNQLEKMPYEHDSY-LWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHG 525
           +AG  ++    +  MP E D    W++L G CRIH N+++G      L+   P  ++ + 
Sbjct: 672 RAGQLEEAYELVNTMPAEFDKVGAWSSLLGACRIHQNVELGEVAAKNLLHLEPNVASHYV 731

Query: 526 LLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYS 585
           LLS+IYS+ G      +VR+ + +   KKE   SWIE  ++VH F   D  HP  + L+ 
Sbjct: 732 LLSNIYSSAGLWNKAMEVRKNMRQMGVKKEPGCSWIEFRDEVHKFMAGDVSHPQSEQLHG 791

Query: 586 VLEQLAGQMGEDA 598
            LE L+ +M ++ 
Sbjct: 792 FLETLSEKMRKEG 804



 Score =  145 bits (367), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 116/498 (23%), Positives = 211/498 (42%), Gaps = 102/498 (20%)

Query: 21  IQSFLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKL 80
           + +  S        EAIS+   +   G R        +L+  +  + LK G+++H     
Sbjct: 61  VDALRSRTRSNDFREAISTYIEMTVSGARPDNFAFPAVLKAVSGLQDLKTGEQIHAAAVK 120

Query: 81  TQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARN 140
               + +  ++N L++MY KCG   D  KVF                             
Sbjct: 121 FGYGSSSVTVANTLVNMYGKCGGIGDVCKVF----------------------------- 151

Query: 141 LFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKL-- 198
             D + +RD VSWN+ I    +    E+ L+ ++ ++  ++  + F+   +   C  L  
Sbjct: 152 --DRITDRDQVSWNSFIAALCRFEKWEQALEAFRAMQMENMELSSFTLVSVALACSNLGV 209

Query: 199 -EELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTM 257
              L+L +Q+HG  L  G                                 +   T   +
Sbjct: 210 MHGLRLGKQLHGYSLRVG--------------------------------DQKTFTNNAL 237

Query: 258 VSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQ 317
           ++ YAKLG ++ +  LF    +++ VSW T+I+ ++++    +AL  F  M++  +  + 
Sbjct: 238 MAMYAKLGRVDDSKALFESFVDRDMVSWNTMISSFSQSDRFSEALAFFRLMVLEGVELDG 297

Query: 318 HTFSSCLCACASIVSLKHGKQVHGFLIRTN-FRSNTIVMSSLIDMYSKCGCLNDGRQVFD 376
            T +S L AC+ +  L  GK++H +++R N    N+ V S+L+DMY  C  +  GR+VFD
Sbjct: 298 VTIASVLPACSHLERLDVGKEIHAYVLRNNDLIENSFVGSALVDMYCNCRQVESGRRVFD 357

Query: 377 LTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVR-SSVKPDKITLAVILNACTHSGLV 435
               +    LWN MIS   ++G DE+A+ LF +M++ + + P+  T+A ++ AC H    
Sbjct: 358 HILGRRIE-LWNAMISGYARNGLDEKALILFIEMIKVAGLLPNTTTMASVMPACVHC--- 413

Query: 436 QEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHG 495
            E  +  ES+ H   +                            K+ ++ D Y+ NAL  
Sbjct: 414 -EAFSNKESI-HGYAV----------------------------KLGFKEDRYVQNALMD 443

Query: 496 VCRIHGNIDMGRKVVDQL 513
           +    G +D+   + D +
Sbjct: 444 MYSRMGKMDISETIFDSM 461



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 74/288 (25%), Positives = 136/288 (47%), Gaps = 37/288 (12%)

Query: 148 RDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQV 207
           R   SW   +    +S    E +  Y  +       + F+F  +L     L++LK   Q+
Sbjct: 55  RSTASWVDALRSRTRSNDFREAISTYIEMTVSGARPDNFAFPAVLKAVSGLQDLKTGEQI 114

Query: 208 HGQVLVTGF-LSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGD 266
           H   +  G+  S+V +++++V+ Y KCG + D  ++FD    RD ++W + ++   +   
Sbjct: 115 HAAAVKFGYGSSSVTVANTLVNMYGKCGGIGDVCKVFDRITDRDQVSWNSFIAALCRF-- 172

Query: 267 MESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCA 326
                       EK    W             ++ALE F  M +  +  +  T  S   A
Sbjct: 173 ------------EK----W-------------EQALEAFRAMQMENMELSSFTLVSVALA 203

Query: 327 CASIV---SLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKEN 383
           C+++     L+ GKQ+HG+ +R      T   ++L+ MY+K G ++D + +F+   +++ 
Sbjct: 204 CSNLGVMHGLRLGKQLHGYSLRVG-DQKTFTNNALMAMYAKLGRVDDSKALFESFVDRD- 261

Query: 384 SMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTH 431
            + WNTMIS+ +Q     +A+  F  MV   V+ D +T+A +L AC+H
Sbjct: 262 MVSWNTMISSFSQSDRFSEALAFFRLMVLEGVELDGVTIASVLPACSH 309



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 47/161 (29%), Positives = 88/161 (54%), Gaps = 4/161 (2%)

Query: 278 PEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGK 337
           P ++  SW   +   TR+   ++A+  +  M +   RP+   F + L A + +  LK G+
Sbjct: 53  PSRSTASWVDALRSRTRSNDFREAISTYIEMTVSGARPDNFAFPAVLKAVSGLQDLKTGE 112

Query: 338 QVHGFLIRTNFRSNTI-VMSSLIDMYSKCGCLNDGRQVFD-LTDNKENSMLWNTMISALT 395
           Q+H   ++  + S+++ V ++L++MY KCG + D  +VFD +TD  + S  WN+ I+AL 
Sbjct: 113 QIHAAAVKFGYGSSSVTVANTLVNMYGKCGGIGDVCKVFDRITDRDQVS--WNSFIAALC 170

Query: 396 QHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQ 436
           +    EQA+  F  M   +++    TL  +  AC++ G++ 
Sbjct: 171 RFEKWEQALEAFRAMQMENMELSSFTLVSVALACSNLGVMH 211


>gi|296089801|emb|CBI39620.3| unnamed protein product [Vitis vinifera]
          Length = 591

 Score =  296 bits (757), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 176/554 (31%), Positives = 274/554 (49%), Gaps = 68/554 (12%)

Query: 52  AETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVD-ARKV 110
           A T++ +L+ C   K L  G+ VH  L +        ++ N L+ MY  C   +D A  V
Sbjct: 93  AFTISSVLKACKGMKCLSYGRLVH-GLAIKHGLDGFIYVDNALMDMYATCCVSMDDACMV 151

Query: 111 FDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGL 170
           F  I +KN                                VSW T+I GY        GL
Sbjct: 152 FRGIHLKN-------------------------------EVSWTTLIAGYTHRDDGYGGL 180

Query: 171 KFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAY 230
           + ++ +    +  N FSF+  +  C  +       Q+H  V   GF SN+ + +SI+D Y
Sbjct: 181 RVFRQMLLEEVELNPFSFSIAVRACTSIGSHTFGEQLHAAVTKHGFESNLPVMNSILDMY 240

Query: 231 AKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIA 290
            +C   S+A R F                                EM +++ ++W TLIA
Sbjct: 241 CRCSCFSEANRYF-------------------------------YEMNQRDLITWNTLIA 269

Query: 291 GYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRS 350
           GY R+    ++L +F+ M      PN  TF+S + ACA++  L  G+Q+HG +IR     
Sbjct: 270 GYERSN-PTESLYVFSMMESEGFSPNCFTFTSIMAACATLAFLNCGQQIHGRIIRRGLDG 328

Query: 351 NTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDM 410
           N  + ++LIDMYSKCG + D  QVF    ++ + + W  M+     HGY E+A+ LF  M
Sbjct: 329 NLALSNALIDMYSKCGNIADSHQVFGGM-SRRDLVSWTAMMIGYGTHGYGEEAVELFDKM 387

Query: 411 VRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGC 470
           VRS ++PD++    IL+AC+H+GLV EGL YF+ M  D  I P+QE + C+++LL +AG 
Sbjct: 388 VRSGIRPDRVVFMAILSACSHAGLVDEGLRYFKLMVGDYNISPDQEIYGCVVDLLGRAGK 447

Query: 471 SDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSI 530
            ++    +E MP++ D  +W    G C+ H   ++G+    +++D  P  + T+ +LS+I
Sbjct: 448 VEEAYELIESMPFKPDECVWGPFLGACKAHTFPNLGKLAAHRILDLRPHMAGTYVMLSNI 507

Query: 531 YSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQL 590
           Y+A GK     ++R+L+     KKE   SW+E+ N V++F V D +    + +Y VLE L
Sbjct: 508 YAADGKWGEFARLRKLMKRMGNKKETGRSWVEVGNHVYSFVVGDEVGSKIEGIYQVLENL 567

Query: 591 AGQMGEDA--PSLD 602
            G M E    P LD
Sbjct: 568 IGHMKESGYVPDLD 581



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 50/166 (30%), Positives = 77/166 (46%), Gaps = 4/166 (2%)

Query: 270 ASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACAS 329
           A+ L      K  +    +IAGYT       A  +F  MM   + PN  T SS L AC  
Sbjct: 46  ATTLIKSYFGKGLIGEALMIAGYTSCNNHTHAWMVFCEMMNEELDPNAFTISSVLKACKG 105

Query: 330 IVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGC--LNDGRQVFDLTDNKENSMLW 387
           +  L +G+ VHG  I+        V ++L+DMY+ C C  ++D   VF     K N + W
Sbjct: 106 MKCLSYGRLVHGLAIKHGLDGFIYVDNALMDMYATC-CVSMDDACMVFRGIHLK-NEVSW 163

Query: 388 NTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSG 433
            T+I+  T        +R+F  M+   V+ +  + ++ + ACT  G
Sbjct: 164 TTLIAGYTHRDDGYGGLRVFRQMLLEEVELNPFSFSIAVRACTSIG 209



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 47/173 (27%), Positives = 85/173 (49%), Gaps = 12/173 (6%)

Query: 10  INRKNLPN-NCLIQSFLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSL 68
           +N+++L   N LI  +     +   +E++    ++   G      T   I+  CA    L
Sbjct: 256 MNQRDLITWNTLIAGY----ERSNPTESLYVFSMMESEGFSPNCFTFTSIMAACATLAFL 311

Query: 69  KLGKRVHLHLKLTQRKTPTTF-LSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLS 127
             G+++H   ++ +R       LSN LI MY KCG+  D+ +VF  +  ++L S+  M+ 
Sbjct: 312 NCGQQIHG--RIIRRGLDGNLALSNALIDMYSKCGNIADSHQVFGGMSRRDLVSWTAMMI 369

Query: 128 GYANLGMMKHARNLFDNMAER----DVVSWNTMIIGYAKSGAVEEGLKFYKVL 176
           GY   G  + A  LFD M       D V +  ++   + +G V+EGL+++K++
Sbjct: 370 GYGTHGYGEEAVELFDKMVRSGIRPDRVVFMAILSACSHAGLVDEGLRYFKLM 422


>gi|125570322|gb|EAZ11837.1| hypothetical protein OsJ_01713 [Oryza sativa Japonica Group]
          Length = 877

 Score =  296 bits (757), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 183/598 (30%), Positives = 299/598 (50%), Gaps = 71/598 (11%)

Query: 13  KNLPNNCLIQSFLSLIS----KGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSL 68
           + +P++ ++ S+ +LIS     G    AI  L  +   G+     TL+ IL+ C+ + + 
Sbjct: 261 EKMPDSDVV-SWNALISGCVLNGHDHRAIELLLQMKYSGLVPNVFTLSSILKACSGAGAF 319

Query: 69  KLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSG 128
            LG+++H                        K  +D D     D I V        ++  
Sbjct: 320 DLGRQIH--------------------GFMIKANADSD-----DYIGV-------GLVDM 347

Query: 129 YANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSF 188
           YA    +  AR +FD M  RD++  N +I G +  G  +E L  +  LR+  +  N  + 
Sbjct: 348 YAKNHFLDDARKVFDWMFHRDLILCNALISGCSHGGRHDEALSLFYELRKEGLGVNRTTL 407

Query: 189 AGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDA 248
           A +L     LE    TRQVH   +  GF+ +  + + ++D+Y KC  LSDA R+F+E  +
Sbjct: 408 AAVLKSTASLEAASTTRQVHALAVKIGFIFDAHVVNGLIDSYWKCSCLSDANRVFEECSS 467

Query: 249 RDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRM 308
                           GD+               ++ T++I   ++   G+ A++LF  M
Sbjct: 468 ----------------GDI---------------IACTSMITALSQCDHGEGAIKLFMEM 496

Query: 309 MILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCL 368
           +   + P+    SS L ACAS+ + + GKQVH  LI+  F S+    ++L+  Y+KCG +
Sbjct: 497 LRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAHLIKRQFMSDAFAGNALVYTYAKCGSI 556

Query: 369 NDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNA 428
            D    F     +   + W+ MI  L QHG+ ++A+ LF  MV   + P+ IT+  +L A
Sbjct: 557 EDAELAFSSLPER-GVVSWSAMIGGLAQHGHGKRALELFGRMVDEGINPNHITMTSVLCA 615

Query: 429 CTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSY 488
           C H+GLV E   YF SM    GI   +EH++C+I+LL +AG  D  M  +  MP++ ++ 
Sbjct: 616 CNHAGLVDEAKRYFNSMKEMFGIDRTEEHYSCMIDLLGRAGKLDDAMELVNSMPFQANAS 675

Query: 489 LWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLIN 548
           +W AL G  R+H + ++G+   ++L    P+ S TH LL++ Y++ G    V KVR+L+ 
Sbjct: 676 IWGALLGASRVHKDPELGKLAAEKLFILEPEKSGTHVLLANTYASAGMWNEVAKVRKLMK 735

Query: 549 ERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQMGEDA--PSLDAD 604
           +   KKE A+SWIE+++KVH F V D  HPM   +Y+ L +L   M +    P++D D
Sbjct: 736 DSNIKKEPAMSWIEVKDKVHTFIVGDKSHPMTKEIYAKLVELGDLMSKAGFVPNVDVD 793



 Score =  158 bits (400), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 90/312 (28%), Positives = 158/312 (50%), Gaps = 33/312 (10%)

Query: 118 NLFSYNNMLSGYANLGMMKHARNLFDNM-AERDVVSWNTMIIGYAKSGAVEEGLKFYKVL 176
           ++F  N +++ Y   G M  AR +F+   +ER+ VSWN ++  Y K+    + ++ +  +
Sbjct: 134 DVFVANALVAMYGGFGFMDDARRVFNEADSERNAVSWNGLMSAYVKNDQCGDAIQVFGEM 193

Query: 177 RRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGEL 236
               I   EF F+ ++  C     ++  RQVH  V+  G+                    
Sbjct: 194 VWSGIQPTEFGFSCVVNACTGSRNIEAGRQVHAMVVRMGY-------------------- 233

Query: 237 SDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNG 296
                       +DV T   +V  Y K+G ++ AS +F +MP+ + VSW  LI+G   NG
Sbjct: 234 -----------DKDVFTANALVDMYMKMGRVDIASVIFEKMPDSDVVSWNALISGCVLNG 282

Query: 297 LGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMS 356
              +A+EL  +M    + PN  T SS L AC+   +   G+Q+HGF+I+ N  S+  +  
Sbjct: 283 HDHRAIELLLQMKYSGLVPNVFTLSSILKACSGAGAFDLGRQIHGFMIKANADSDDYIGV 342

Query: 357 SLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVK 416
            L+DMY+K   L+D R+VFD   +++  +L N +IS  +  G  ++A+ LF+++ +  + 
Sbjct: 343 GLVDMYAKNHFLDDARKVFDWMFHRD-LILCNALISGCSHGGRHDEALSLFYELRKEGLG 401

Query: 417 PDKITLAVILNA 428
            ++ TLA +L +
Sbjct: 402 VNRTTLAAVLKS 413



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 125/525 (23%), Positives = 229/525 (43%), Gaps = 72/525 (13%)

Query: 26  SLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKT 85
           + +   Q  +AI     +   GI+      + ++  C  S++++ G++VH          
Sbjct: 176 AYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIEAGRQVH---------- 225

Query: 86  PTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNM 145
                     +M  + G D            K++F+ N ++  Y  +G +  A  +F+ M
Sbjct: 226 ----------AMVVRMGYD------------KDVFTANALVDMYMKMGRVDIASVIFEKM 263

Query: 146 AERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTR 205
            + DVVSWN +I G   +G     ++    ++   +  N F+ + IL  C       L R
Sbjct: 264 PDSDVVSWNALISGCVLNGHDHRAIELLLQMKYSGLVPNVFTLSSILKACSGAGAFDLGR 323

Query: 206 QVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLG 265
           Q+HG ++     S+  I   +VD YAK   L DAR++FD    RD++    ++SG +  G
Sbjct: 324 QIHGFMIKANADSDDYIGVGLVDMYAKNHFLDDARKVFDWMFHRDLILCNALISGCSHGG 383

Query: 266 DMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLC 325
             + A  LF E+                + GLG                 N+ T ++ L 
Sbjct: 384 RHDEALSLFYEL---------------RKEGLGV----------------NRTTLAAVLK 412

Query: 326 ACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSM 385
           + AS+ +    +QVH   ++  F  +  V++ LID Y KC CL+D  +VF+   + +  +
Sbjct: 413 STASLEAASTTRQVHALAVKIGFIFDAHVVNGLIDSYWKCSCLSDANRVFEECSSGD-II 471

Query: 386 LWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESM 445
              +MI+AL+Q  + E AI+LF +M+R  ++PD   L+ +LNAC      ++G      +
Sbjct: 472 ACTSMITALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAHL 531

Query: 446 THDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDM 505
                 + +      L+   A+ G  +        +P E     W+A+ G    HG+   
Sbjct: 532 IKRQ-FMSDAFAGNALVYTYAKCGSIEDAELAFSSLP-ERGVVSWSAMIGGLAQHGHGKR 589

Query: 506 GRKVVDQLIDQ--NPQSSATHGLLSSIYSALGKGRLVEKVRQLIN 548
             ++  +++D+  NP     H  ++S+  A     LV++ ++  N
Sbjct: 590 ALELFGRMVDEGINPN----HITMTSVLCACNHAGLVDEAKRYFN 630



 Score =  148 bits (373), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 102/388 (26%), Positives = 179/388 (46%), Gaps = 70/388 (18%)

Query: 52  AETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVF 111
           A T++  L + A +++L  G   HLH  L +  +  +F  NHLIS Y KC     AR+  
Sbjct: 4   AGTISQQLTRYAAAQALLPG--AHLHASLLKSGSLASF-RNHLISFYSKCRRPCCARR-- 58

Query: 112 DKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLK 171
                                         FD + +   VSW++++  Y+ +G     ++
Sbjct: 59  -----------------------------FFDEIPDPCHVSWSSLVTAYSNNGLPRSAIQ 89

Query: 172 FYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYA 231
            +  +R   + CNEF+   +L  CV   + +L  QVH   + TGF S+V +++++V  Y 
Sbjct: 90  AFHGMRAEGVCCNEFALPVVLK-CVP--DARLGAQVHAMAMATGFGSDVFVANALVAMYG 146

Query: 232 KCGELSDARRLFDETDA-RDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIA 290
             G + DARR+F+E D+ R+ ++W  ++S Y K                           
Sbjct: 147 GFGFMDDARRVFNEADSERNAVSWNGLMSAYVK--------------------------- 179

Query: 291 GYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRS 350
               N     A+++F  M+   I+P +  FS  + AC    +++ G+QVH  ++R  +  
Sbjct: 180 ----NDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIEAGRQVHAMVVRMGYDK 235

Query: 351 NTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDM 410
           +    ++L+DMY K G ++    +F+   + +  + WN +IS    +G+D +AI L   M
Sbjct: 236 DVFTANALVDMYMKMGRVDIASVIFEKMPDSD-VVSWNALISGCVLNGHDHRAIELLLQM 294

Query: 411 VRSSVKPDKITLAVILNACTHSGLVQEG 438
             S + P+  TL+ IL AC+ +G    G
Sbjct: 295 KYSGLVPNVFTLSSILKACSGAGAFDLG 322



 Score =  119 bits (298), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 71/246 (28%), Positives = 128/246 (52%), Gaps = 5/246 (2%)

Query: 257 MVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPN 316
           ++S Y+K      A + F+E+P+   VSW++L+  Y+ NGL + A++ F  M    +  N
Sbjct: 43  LISFYSKCRRPCCARRFFDEIPDPCHVSWSSLVTAYSNNGLPRSAIQAFHGMRAEGVCCN 102

Query: 317 QHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFD 376
           +      L     +   + G QVH   + T F S+  V ++L+ MY   G ++D R+VF+
Sbjct: 103 EFALPVVL---KCVPDARLGAQVHAMAMATGFGSDVFVANALVAMYGGFGFMDDARRVFN 159

Query: 377 LTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQ 436
             D++ N++ WN ++SA  ++     AI++F +MV S ++P +   + ++NACT S  ++
Sbjct: 160 EADSERNAVSWNGLMSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIE 219

Query: 437 EGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGV 496
            G     +M   +G   +      L+++  + G  D      EKMP + D   WNAL   
Sbjct: 220 AG-RQVHAMVVRMGYDKDVFTANALVDMYMKMGRVDIASVIFEKMP-DSDVVSWNALISG 277

Query: 497 CRIHGN 502
           C ++G+
Sbjct: 278 CVLNGH 283


>gi|449508637|ref|XP_004163369.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g56570-like [Cucumis sativus]
          Length = 594

 Score =  296 bits (757), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 174/549 (31%), Positives = 274/549 (49%), Gaps = 68/549 (12%)

Query: 52  AETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYF-KCGSDVDARKV 110
           A T++ +L+ C   K+L  G   H  L        + ++ N L+ MY   C +  DA  V
Sbjct: 109 AFTMSSVLKACKGMKALSCGALAH-SLATKHGIDRSVYVQNALLDMYAASCATMDDALSV 167

Query: 111 FDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGL 170
           F+ IP+K                                 VSW T+I G+   G    GL
Sbjct: 168 FNDIPLKT-------------------------------AVSWTTLIAGFTHRGDGYSGL 196

Query: 171 KFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAY 230
             ++ +    +  N FSF+     C  +      +Q+H  V   G   +  + +SI+D Y
Sbjct: 197 LAFRQMLLEDVGPNSFSFSIAARACASISSYSCGKQIHAAVTKYGLHCDAPVMNSILDMY 256

Query: 231 AKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIA 290
            +C  L DA+R F                                E+ EKN ++W TLIA
Sbjct: 257 CRCNYLCDAKRCF-------------------------------GELTEKNLITWNTLIA 285

Query: 291 GYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRS 350
           GY R+    ++L LF +M     +PN  TF+S   ACA++  L  G+QVHG ++R  F  
Sbjct: 286 GYERSD-SSESLSLFFQMGSEGYKPNCFTFTSITAACANLAVLSCGQQVHGGIVRRGFDK 344

Query: 351 NTIVMSSLIDMYSKCGCLNDGRQVF-DLTDNKENSMLWNTMISALTQHGYDEQAIRLFHD 409
           N  +++SLIDMY+KCG ++D  ++F D+      S  W TM+     HGY ++A++LF +
Sbjct: 345 NVALINSLIDMYAKCGSISDSHKLFCDMPGRDLVS--WTTMMIGYGAHGYGKEAVKLFDE 402

Query: 410 MVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAG 469
           MV+S ++PD+I    +L  C+H+GLV +GL YF SM  D  I P+QE + C+++LL +AG
Sbjct: 403 MVQSGIQPDRIVFMGVLCGCSHAGLVDKGLKYFRSMLEDYNINPDQEIYRCVVDLLGRAG 462

Query: 470 CSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSS 529
             ++    +E MP+E D  +W AL G C+ +   ++G     +++D+ P  + T+ LLS 
Sbjct: 463 RVEEAFQLVENMPFEPDESVWGALLGACKAYKLSNLGNLAAQRVLDRRPNMAGTYLLLSK 522

Query: 530 IYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQ 589
           IY+A GK     K+R+L+     KKE   SWIEI N+V++F V   + P  + ++ V++ 
Sbjct: 523 IYAAEGKWGEFAKMRKLMKGMNKKKEVGKSWIEIRNEVYSFVVGAKMGPHIEWVHKVIDV 582

Query: 590 LAGQMGEDA 598
           L   M +D 
Sbjct: 583 LIWHMKDDG 591



 Score =  159 bits (401), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 120/488 (24%), Positives = 210/488 (43%), Gaps = 75/488 (15%)

Query: 124 NMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISC 183
           N++  Y + G+ + A NLF+ + ERDVV+W  MI+G+       +    +  + R  +  
Sbjct: 48  NLIKSYFDKGLTREACNLFNEIPERDVVTWTAMIVGFTSCNHYHQAWTMFSEMLRSEVQP 107

Query: 184 NEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLF 243
           N F+ + +L  C  ++ L      H      G   +V + ++++D YA            
Sbjct: 108 NAFTMSSVLKACKGMKALSCGALAHSLATKHGIDRSVYVQNALLDMYA------------ 155

Query: 244 DETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALE 303
                             A    M+ A  +FN++P K  VSWTTLIAG+T  G G   L 
Sbjct: 156 ------------------ASCATMDDALSVFNDIPLKTAVSWTTLIAGFTHRGDGYSGLL 197

Query: 304 LFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYS 363
            F +M++  + PN  +FS    ACASI S   GKQ+H  + +     +  VM+S++DMY 
Sbjct: 198 AFRQMLLEDVGPNSFSFSIAARACASISSYSCGKQIHAAVTKYGLHCDAPVMNSILDMYC 257

Query: 364 KCGCLNDGRQVF-DLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITL 422
           +C  L D ++ F +LT+  +N + WNT+I+   +    E ++ LF  M     KP+  T 
Sbjct: 258 RCNYLCDAKRCFGELTE--KNLITWNTLIAGYERSDSSE-SLSLFFQMGSEGYKPNCFTF 314

Query: 423 AVILNACT-----------HSGLVQEGLTYFESMTHDL-------GIIPNQEHHAC---- 460
             I  AC            H G+V+ G     ++ + L       G I +     C    
Sbjct: 315 TSITAACANLAVLSCGQQVHGGIVRRGFDKNVALINSLIDMYAKCGSISDSHKLFCDMPG 374

Query: 461 ---------LIELLAQAGCSD--QLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKV 509
                    +I   A     +  +L +++ +   + D  ++  +   C   G +D G K 
Sbjct: 375 RDLVSWTTMMIGYGAHGYGKEAVKLFDEMVQSGIQPDRIVFMGVLCGCSHAGLVDKGLKY 434

Query: 510 VDQLIDQ---NPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENK 566
              +++    NP       +   +   LG+   VE+  QL+    F+ ++++ W  +   
Sbjct: 435 FRSMLEDYNINPDQE----IYRCVVDLLGRAGRVEEAFQLVENMPFEPDESV-WGALLGA 489

Query: 567 VHAFSVSD 574
             A+ +S+
Sbjct: 490 CKAYKLSN 497



 Score = 96.3 bits (238), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 51/177 (28%), Positives = 86/177 (48%), Gaps = 2/177 (1%)

Query: 255 TTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIR 314
           T ++  Y   G    A  LFNE+PE++ V+WT +I G+T      +A  +F+ M+   ++
Sbjct: 47  TNLIKSYFDKGLTREACNLFNEIPERDVVTWTAMIVGFTSCNHYHQAWTMFSEMLRSEVQ 106

Query: 315 PNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMY-SKCGCLNDGRQ 373
           PN  T SS L AC  + +L  G   H    +     +  V ++L+DMY + C  ++D   
Sbjct: 107 PNAFTMSSVLKACKGMKALSCGALAHSLATKHGIDRSVYVQNALLDMYAASCATMDDALS 166

Query: 374 VFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACT 430
           VF+    K  ++ W T+I+  T  G     +  F  M+   V P+  + ++   AC 
Sbjct: 167 VFNDIPLK-TAVSWTTLIAGFTHRGDGYSGLLAFRQMLLEDVGPNSFSFSIAARACA 222



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 49/158 (31%), Positives = 80/158 (50%), Gaps = 8/158 (5%)

Query: 26  SLISKGQLSEAISSLDLLAQ---RGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQ 82
           +LI+  + S++  SL L  Q    G +    T   I   CA    L  G++VH  + + +
Sbjct: 282 TLIAGYERSDSSESLSLFFQMGSEGYKPNCFTFTSITAACANLAVLSCGQQVHGGI-VRR 340

Query: 83  RKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLF 142
                  L N LI MY KCGS  D+ K+F  +P ++L S+  M+ GY   G  K A  LF
Sbjct: 341 GFDKNVALINSLIDMYAKCGSISDSHKLFCDMPGRDLVSWTTMMIGYGAHGYGKEAVKLF 400

Query: 143 DNMAER----DVVSWNTMIIGYAKSGAVEEGLKFYKVL 176
           D M +     D + +  ++ G + +G V++GLK+++ +
Sbjct: 401 DEMVQSGIQPDRIVFMGVLCGCSHAGLVDKGLKYFRSM 438


>gi|449465002|ref|XP_004150218.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Cucumis sativus]
 gi|449500809|ref|XP_004161200.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Cucumis sativus]
          Length = 926

 Score =  296 bits (757), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 187/642 (29%), Positives = 311/642 (48%), Gaps = 107/642 (16%)

Query: 31  GQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVH-LHLKLTQRKTPTTF 89
           G   E+I+    + + GI+  + T + IL+  A    ++ G++VH L  KL      T  
Sbjct: 230 GNYGESINLFKQMLELGIKPNSYTFSSILKCFAAVARVEEGRQVHGLICKLGFNSYNTVV 289

Query: 90  LSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERD 149
             N LIS YF        RKV                         + A+ LFD + +RD
Sbjct: 290 --NSLISFYFV------GRKV-------------------------RCAQKLFDELTDRD 316

Query: 150 VVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHG 209
           V+SWN+MI GY K+G  + G++ +  +  F +  +  +   +   C  +  L L + +H 
Sbjct: 317 VISWNSMISGYVKNGLDDRGIEIFIKMLVFGVDIDLATMVNVFVACANIGTLLLGKVLHS 376

Query: 210 QVLVTGFLS-NVVISSSIVDAYAKCGELSDARR--------------------------- 241
             +    L   V  +++++D Y+KCG+L+ A R                           
Sbjct: 377 YSIKAATLDREVRFNNTLLDMYSKCGDLNSAIRVFERMDEKTVVSWTSMITGYVREGLSD 436

Query: 242 ----LFDETDAR----DVLTWTTMVSG--------------------------------- 260
               LFDE  +R    DV   T++++                                  
Sbjct: 437 GAIKLFDEMKSRGVVPDVYAVTSILNACAINGNLKSGKIVHDYIRENNLETNSFVSNALT 496

Query: 261 --YAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQH 318
             YAK G M+ A  +F+ M +K+ +SW T+I GYT+N L  +AL LF  M     +P+  
Sbjct: 497 DMYAKCGSMKDAHDVFSHMKKKDVISWNTMIGGYTKNSLPNEALTLFAEMQ-RESKPDGT 555

Query: 319 TFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLT 378
           T +  L ACAS+ +L  G+++HG+ +R  +  +  V ++++DMY KCG L   R +FD+ 
Sbjct: 556 TVACILPACASLAALDKGREIHGYALRNGYSEDKYVTNAVVDMYVKCGLLVLARSLFDMI 615

Query: 379 DNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEG 438
            NK+  + W  MI+    HGY  +AI  F+ M  + ++PD+++   IL AC+HSGL+ EG
Sbjct: 616 PNKD-LVSWTVMIAGYGMHGYGSEAINTFNQMRMTGIEPDEVSFISILYACSHSGLLDEG 674

Query: 439 LTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCR 498
              F  M  +  I PN EH+AC+++LLA+ G   +    ++ MP + D+ +W AL   CR
Sbjct: 675 WKIFNIMKKECQIEPNLEHYACMVDLLARTGNLVKAHKFIKAMPIKPDATIWGALLCGCR 734

Query: 499 IHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAI 558
           IH ++ +  KV +++ +  P+++  + LL++IY+   K   V+K+R+ I +R  KK    
Sbjct: 735 IHHDVKLAEKVAERIFELEPENTGYYVLLANIYAEAEKWEEVQKLRKKIGQRGLKKNPGC 794

Query: 559 SWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQMGEDAPS 600
           SWIEI+ K++ F   D   P    +  +L++L  +M E+  S
Sbjct: 795 SWIEIKGKINIFVAGDCSKPQAKKIELLLKRLRSKMKEEGYS 836



 Score =  166 bits (421), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 124/443 (27%), Positives = 197/443 (44%), Gaps = 75/443 (16%)

Query: 58  ILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVK 117
           ILQ CAE KS++ G+RV   ++ +        L   L+ MY KCG   + R VFDK+   
Sbjct: 156 ILQLCAERKSIRDGRRVRSIIE-SSGVMIDGILGVKLVFMYVKCGDLKEGRMVFDKLSES 214

Query: 118 NLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLR 177
            +F +N M+S Y+  G    + NLF  M E                              
Sbjct: 215 KIFLWNLMISEYSGSGNYGESINLFKQMLE------------------------------ 244

Query: 178 RFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELS 237
              I  N ++F+ IL     +  ++  RQVHG +   GF S   + +S++  Y    ++ 
Sbjct: 245 -LGIKPNSYTFSSILKCFAAVARVEEGRQVHGLICKLGFNSYNTVVNSLISFYFVGRKVR 303

Query: 238 DARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGL 297
            A++LFDE   RDV++W +M+SGY K                               NGL
Sbjct: 304 CAQKLFDELTDRDVISWNSMISGYVK-------------------------------NGL 332

Query: 298 GQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVM-S 356
             + +E+F +M++  +  +  T  +   ACA+I +L  GK +H + I+       +   +
Sbjct: 333 DDRGIEIFIKMLVFGVDIDLATMVNVFVACANIGTLLLGKVLHSYSIKAATLDREVRFNN 392

Query: 357 SLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVK 416
           +L+DMYSKCG LN   +VF+  D K   + W +MI+   + G  + AI+LF +M    V 
Sbjct: 393 TLLDMYSKCGDLNSAIRVFERMDEK-TVVSWTSMITGYVREGLSDGAIKLFDEMKSRGVV 451

Query: 417 PDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHA----CLIELLAQAGCSD 472
           PD   +  ILNAC  +G ++ G      + HD     N E ++     L ++ A+ G   
Sbjct: 452 PDVYAVTSILNACAINGNLKSG-----KIVHDYIRENNLETNSFVSNALTDMYAKCGSMK 506

Query: 473 QLMNQLEKMPYEHDSYLWNALHG 495
              +    M  + D   WN + G
Sbjct: 507 DAHDVFSHMK-KKDVISWNTMIG 528



 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 96/347 (27%), Positives = 152/347 (43%), Gaps = 50/347 (14%)

Query: 28  ISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPT 87
           + +G    AI   D +  RG+      +  IL  CA + +LK GK VH +++    +T  
Sbjct: 430 VREGLSDGAIKLFDEMKSRGVVPDVYAVTSILNACAINGNLKSGKIVHDYIRENNLET-N 488

Query: 88  TFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAE 147
           +F+SN L  MY KCGS  DA  VF  +  K++ S+N M+ GY    +   A  LF  M  
Sbjct: 489 SFVSNALTDMYAKCGSMKDAHDVFSHMKKKDVISWNTMIGGYTKNSLPNEALTLFAEMQR 548

Query: 148 RDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQV 207
                  T+                                A IL  C  L  L   R++
Sbjct: 549 ESKPDGTTV--------------------------------ACILPACASLAALDKGREI 576

Query: 208 HGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDM 267
           HG  L  G+  +  +++++VD Y KCG L  AR LFD    +D+++WT M++GY   G  
Sbjct: 577 HGYALRNGYSEDKYVTNAVVDMYVKCGLLVLARSLFDMIPNKDLVSWTVMIAGYGMHGYG 636

Query: 268 ESASKLFNEMP----EKNPVSWTTLIAGYTRNGLGQKALELFTRMMI-LRIRPNQHTFSS 322
             A   FN+M     E + VS+ +++   + +GL  +  ++F  M    +I PN   +  
Sbjct: 637 SEAINTFNQMRMTGIEPDEVSFISILYACSHSGLLDEGWKIFNIMKKECQIEPNLEHY-- 694

Query: 323 CLCACASIVSLKHGKQV--HGFLIRTNFRSNTIVMSSLIDMYSKCGC 367
              AC   +  + G  V  H F+     + +  +  +L+     CGC
Sbjct: 695 ---ACMVDLLARTGNLVKAHKFIKAMPIKPDATIWGALL-----CGC 733



 Score =  116 bits (290), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 96/410 (23%), Positives = 177/410 (43%), Gaps = 74/410 (18%)

Query: 187 SFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDET 246
           ++  IL +C + + ++  R+V   +  +G + + ++   +V  Y KCG+L + R +FD+ 
Sbjct: 152 AYCSILQLCAERKSIRDGRRVRSIIESSGVMIDGILGVKLVFMYVKCGDLKEGRMVFDKL 211

Query: 247 DARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFT 306
               +  W  M+S Y+  G+                                 +++ LF 
Sbjct: 212 SESKIFLWNLMISEYSGSGNY-------------------------------GESINLFK 240

Query: 307 RMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCG 366
           +M+ L I+PN +TFSS L   A++  ++ G+QVHG + +  F S   V++SLI  Y    
Sbjct: 241 QMLELGIKPNSYTFSSILKCFAAVARVEEGRQVHGLICKLGFNSYNTVVNSLISFYFVGR 300

Query: 367 CLNDGRQVFD-LTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVI 425
            +   +++FD LTD   + + WN+MIS   ++G D++ I +F  M+   V  D  T+  +
Sbjct: 301 KVRCAQKLFDELTD--RDVISWNSMISGYVKNGLDDRGIEIFIKMLVFGVDIDLATMVNV 358

Query: 426 LNACTHSGLVQEGLTY----FESMTHDLGIIPNQE----HHAC----------------- 460
             AC + G +  G        ++ T D  +  N      +  C                 
Sbjct: 359 FVACANIGTLLLGKVLHSYSIKAATLDREVRFNNTLLDMYSKCGDLNSAIRVFERMDEKT 418

Query: 461 ------LIELLAQAGCSD---QLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVD 511
                 +I    + G SD   +L ++++      D Y   ++   C I+GN+  G+ V D
Sbjct: 419 VVSWTSMITGYVREGLSDGAIKLFDEMKSRGVVPDVYAVTSILNACAINGNLKSGKIVHD 478

Query: 512 QLIDQNPQS-SATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISW 560
            + + N ++ S     L+ +Y+  G  +    V         KK+  ISW
Sbjct: 479 YIRENNLETNSFVSNALTDMYAKCGSMKDAHDVFS-----HMKKKDVISW 523


>gi|296086269|emb|CBI31710.3| unnamed protein product [Vitis vinifera]
          Length = 649

 Score =  296 bits (757), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 163/480 (33%), Positives = 276/480 (57%), Gaps = 11/480 (2%)

Query: 120 FSYNNMLSGYANLGMMKH----ARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLK-FYK 174
           F +++ ++   NL  + H    AR++FD+      + WN+MI  Y +S    E L+ +Y 
Sbjct: 80  FKHHHSITHLINLYSLFHKCDLARSVFDSTPNPSRILWNSMIRAYTRSKQYNEALEMYYC 139

Query: 175 VLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCG 234
           ++ +  +  + F  AG++ +  K+ +LK  R+V  ++       +VV  ++++   ++  
Sbjct: 140 MVEKGGLERDVFIGAGLVDMYSKMGDLKRAREVFDKMPK----RDVVAWNAMIAGLSQSE 195

Query: 235 ELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTR 294
           +   ARR+FD+   +D ++W TM++GYA  G      +LF++M   N V+W  +IA Y +
Sbjct: 196 DPYVARRVFDQMVDQDDVSWGTMMAGYAHNGCFVEVLELFDKMKLGN-VTWNVIIAAYMQ 254

Query: 295 NGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIV 354
           NG  ++A+  F +M +    PN  TF S L A A + + + G   H  +I+  F SNT+V
Sbjct: 255 NGHAKEAISSFHQMRLENFHPNSVTFVSVLPAAAYLAAFREGMAFHACIIQMGFLSNTLV 314

Query: 355 MSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSS 414
            +SLIDMY+KCG L+   ++F+  D+K+ ++ WN M+S    HG+ ++AI LF  M  S 
Sbjct: 315 GNSLIDMYAKCGQLDYSEKLFNEMDHKD-TVSWNAMLSGYAVHGHGDRAIALFSLMQESQ 373

Query: 415 VKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQL 474
           V+ D ++   +L+AC H+GLV+EG   F SM+    I P+ EH+AC+++LL +AG  D+ 
Sbjct: 374 VQIDSVSFVSVLSACRHAGLVEEGRKIFHSMSDKYHIKPDLEHYACMVDLLGRAGLFDET 433

Query: 475 MNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSAL 534
           +  ++ MP E D+ +W AL G CR+H N+ +G   +D L+   P++ A   +LSSIY+  
Sbjct: 434 LGFIKVMPVEPDAGVWGALLGSCRMHSNVKLGEVALDHLVKLEPRNPAHFVVLSSIYAQS 493

Query: 535 GKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQM 594
           G+     K R  +N+   KK    SW+E++NKVHAF V D  HP  + ++ +   L  +M
Sbjct: 494 GRWADAGKARSKMNDLGLKKTPGCSWVELKNKVHAFRVGDKSHPQLESMHLLWNTLLEKM 553



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 74/255 (29%), Positives = 128/255 (50%), Gaps = 34/255 (13%)

Query: 88  TFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAE 147
            F+   L+ MY K G    AR+VFDK+P +++ ++N M++G +       AR +FD M +
Sbjct: 150 VFIGAGLVDMYSKMGDLKRAREVFDKMPKRDVVAWNAMIAGLSQSEDPYVARRVFDQMVD 209

Query: 148 RDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISC------------------------ 183
           +D VSW TM+ GYA +G   E L+ +  ++  +++                         
Sbjct: 210 QDDVSWGTMMAGYAHNGCFVEVLELFDKMKLGNVTWNVIIAAYMQNGHAKEAISSFHQMR 269

Query: 184 ------NEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELS 237
                 N  +F  +L     L   +     H  ++  GFLSN ++ +S++D YAKCG+L 
Sbjct: 270 LENFHPNSVTFVSVLPAAAYLAAFREGMAFHACIIQMGFLSNTLVGNSLIDMYAKCGQLD 329

Query: 238 DARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEK----NPVSWTTLIAGYT 293
            + +LF+E D +D ++W  M+SGYA  G  + A  LF+ M E     + VS+ ++++   
Sbjct: 330 YSEKLFNEMDHKDTVSWNAMLSGYAVHGHGDRAIALFSLMQESQVQIDSVSFVSVLSACR 389

Query: 294 RNGLGQKALELFTRM 308
             GL ++  ++F  M
Sbjct: 390 HAGLVEEGRKIFHSM 404



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 49/164 (29%), Positives = 75/164 (45%), Gaps = 8/164 (4%)

Query: 14  NLPNNCLIQSFLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKR 73
           N+  N +I +++     G   EAISS   +        + T   +L   A   + + G  
Sbjct: 242 NVTWNVIIAAYMQ---NGHAKEAISSFHQMRLENFHPNSVTFVSVLPAAAYLAAFREGMA 298

Query: 74  VHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLG 133
            H  + +       T + N LI MY KCG    + K+F+++  K+  S+N MLSGYA  G
Sbjct: 299 FHACI-IQMGFLSNTLVGNSLIDMYAKCGQLDYSEKLFNEMDHKDTVSWNAMLSGYAVHG 357

Query: 134 MMKHARNLFDNMAER----DVVSWNTMIIGYAKSGAVEEGLKFY 173
               A  LF  M E     D VS+ +++     +G VEEG K +
Sbjct: 358 HGDRAIALFSLMQESQVQIDSVSFVSVLSACRHAGLVEEGRKIF 401


>gi|357480897|ref|XP_003610734.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355512069|gb|AES93692.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 726

 Score =  295 bits (756), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 150/479 (31%), Positives = 271/479 (56%), Gaps = 1/479 (0%)

Query: 116 VKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKV 175
           V + F    +++ YA+   +  AR LFD M   D V+WN +I GY ++G  ++ L+ ++ 
Sbjct: 153 VDDPFIQTGLIAMYASCRRIMDARLLFDKMCHPDAVAWNMIIDGYCQNGHYDDALRLFED 212

Query: 176 LRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGE 235
           +R   +  +      +L+ C     L   R +H  V   G+  +  + +++++ YA CG 
Sbjct: 213 MRSSDMKPDSVILCTVLSACGHAGNLSYGRTIHEFVKDNGYAIDSHLQTALINMYANCGA 272

Query: 236 LSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRN 295
           +  AR+++D   ++ ++  T M+SGYAKLG ++ A  +F++M E++ V W+ +I+GY  +
Sbjct: 273 MDLARKIYDGLSSKHLIVSTAMLSGYAKLGMVKDARFIFDQMIERDLVCWSAMISGYAES 332

Query: 296 GLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVM 355
              Q+AL+LF  M+  R  P+Q T  S + AC+ + +L     +H ++ R+ F     V 
Sbjct: 333 DQPQEALKLFDEMLQKRSVPDQITMLSVISACSHVGALAQANWIHTYVDRSGFGRALSVN 392

Query: 356 SSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSV 415
           ++LIDMY+KCG L   R+VF+    K N + W++MI+A   HG  + AI+LF  M   ++
Sbjct: 393 NALIDMYAKCGNLVKAREVFENMPRK-NVISWSSMINAFAMHGNADSAIKLFRRMKEVNI 451

Query: 416 KPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLM 475
           +P+ +T   +L AC H+GLV+EG   F SM ++ GI P +EH+ C+++L  +A    + +
Sbjct: 452 EPNGVTFIGVLYACGHAGLVEEGEKLFSSMINEHGISPTREHYGCMVDLYCRANFLRKAI 511

Query: 476 NQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALG 535
             +E MP+  +  +W +L   C++HG  ++G     +L++  P       +LS+IY+   
Sbjct: 512 ELIETMPFAPNVIIWGSLMSACQVHGEAELGEFAAKRLLELEPDHDGALVVLSNIYAKEK 571

Query: 536 KGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQM 594
           +   V  +R+ ++ +   KE+A S IEI N+VH F ++D  H   D +Y  L+++  ++
Sbjct: 572 RWNDVGLIRKSMSYKGISKEKASSRIEINNQVHMFMMADRYHKQSDEIYEKLDEVVSKL 630



 Score =  165 bits (417), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 104/373 (27%), Positives = 184/373 (49%), Gaps = 35/373 (9%)

Query: 31  GQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFL 90
           G   +A+   + +    ++  +  L  +L  C  + +L  G+ +H  +K        + L
Sbjct: 201 GHYDDALRLFEDMRSSDMKPDSVILCTVLSACGHAGNLSYGRTIHEFVK-DNGYAIDSHL 259

Query: 91  SNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDV 150
              LI+MY  CG+   ARK++D +  K+L     MLSGYA LGM+K AR +FD M ERD+
Sbjct: 260 QTALINMYANCGAMDLARKIYDGLSSKHLIVSTAMLSGYAKLGMVKDARFIFDQMIERDL 319

Query: 151 VSWNTMIIGYAKSGAVEEGLKFY-KVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHG 209
           V W+ MI GYA+S   +E LK + ++L++ S+  ++ +   +++ C  +  L     +H 
Sbjct: 320 VCWSAMISGYAESDQPQEALKLFDEMLQKRSVP-DQITMLSVISACSHVGALAQANWIHT 378

Query: 210 QVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMES 269
            V  +GF   + ++++++D YAKCG L  AR +F+    ++V++W++M++ +A  G+ +S
Sbjct: 379 YVDRSGFGRALSVNNALIDMYAKCGNLVKAREVFENMPRKNVISWSSMINAFAMHGNADS 438

Query: 270 ASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACAS 329
           A KLF  M E N                               I PN  TF   L AC  
Sbjct: 439 AIKLFRRMKEVN-------------------------------IEPNGVTFIGVLYACGH 467

Query: 330 IVSLKHGKQVHGFLIRTNFRSNTIV-MSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWN 388
              ++ G+++   +I  +  S T      ++D+Y +   L    ++ +      N ++W 
Sbjct: 468 AGLVEEGEKLFSSMINEHGISPTREHYGCMVDLYCRANFLRKAIELIETMPFAPNVIIWG 527

Query: 389 TMISALTQHGYDE 401
           +++SA   HG  E
Sbjct: 528 SLMSACQVHGEAE 540



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 94/431 (21%), Positives = 186/431 (43%), Gaps = 70/431 (16%)

Query: 154 NTMIIGYAKSGAVEEGLKFYKVLRRF-SISCNEFSFAGILTICVKLEELKLTRQVHGQVL 212
           N ++   ++S   E+ +  Y  LR   + + + FSF  +L    K+       ++HG   
Sbjct: 89  NQLLRHLSRSSFPEKTIFLYHNLRAINAFALDRFSFPSLLKAVSKVSAFNHGLEIHGLAS 148

Query: 213 VTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASK 272
             GF+ +  I + ++  YA C  + DAR LFD+    D + W  ++ GY + G  + A +
Sbjct: 149 KLGFVDDPFIQTGLIAMYASCRRIMDARLLFDKMCHPDAVAWNMIIDGYCQNGHYDDALR 208

Query: 273 LFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVS 332
           LF +M   +                               ++P+     + L AC    +
Sbjct: 209 LFEDMRSSD-------------------------------MKPDSVILCTVLSACGHAGN 237

Query: 333 LKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKE----NSML-- 386
           L +G+ +H F+    +  ++ + ++LI+MY+ CG ++  R+++D   +K      +ML  
Sbjct: 238 LSYGRTIHEFVKDNGYAIDSHLQTALINMYANCGAMDLARKIYDGLSSKHLIVSTAMLSG 297

Query: 387 ------------------------WNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITL 422
                                   W+ MIS   +    ++A++LF +M++    PD+IT+
Sbjct: 298 YAKLGMVKDARFIFDQMIERDLVCWSAMISGYAESDQPQEALKLFDEMLQKRSVPDQITM 357

Query: 423 AVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMP 482
             +++AC+H G + +   +  +     G       +  LI++ A+ G   +     E MP
Sbjct: 358 LSVISACSHVGALAQA-NWIHTYVDRSGFGRALSVNNALIDMYAKCGNLVKAREVFENMP 416

Query: 483 YEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEK 542
            + +   W+++     +HGN D   K+  ++ + N + +     +  +Y A G   LVE+
Sbjct: 417 RK-NVISWSSMINAFAMHGNADSAIKLFRRMKEVNIEPNGV-TFIGVLY-ACGHAGLVEE 473

Query: 543 VRQL----INE 549
             +L    INE
Sbjct: 474 GEKLFSSMINE 484


>gi|225450537|ref|XP_002277327.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g56570 [Vitis vinifera]
          Length = 607

 Score =  295 bits (756), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 176/554 (31%), Positives = 274/554 (49%), Gaps = 68/554 (12%)

Query: 52  AETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVD-ARKV 110
           A T++ +L+ C   K L  G+ VH  L +        ++ N L+ MY  C   +D A  V
Sbjct: 109 AFTISSVLKACKGMKCLSYGRLVH-GLAIKHGLDGFIYVDNALMDMYATCCVSMDDACMV 167

Query: 111 FDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGL 170
           F  I +KN                                VSW T+I GY        GL
Sbjct: 168 FRGIHLKN-------------------------------EVSWTTLIAGYTHRDDGYGGL 196

Query: 171 KFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAY 230
           + ++ +    +  N FSF+  +  C  +       Q+H  V   GF SN+ + +SI+D Y
Sbjct: 197 RVFRQMLLEEVELNPFSFSIAVRACTSIGSHTFGEQLHAAVTKHGFESNLPVMNSILDMY 256

Query: 231 AKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIA 290
            +C   S+A R F                                EM +++ ++W TLIA
Sbjct: 257 CRCSCFSEANRYF-------------------------------YEMNQRDLITWNTLIA 285

Query: 291 GYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRS 350
           GY R+    ++L +F+ M      PN  TF+S + ACA++  L  G+Q+HG +IR     
Sbjct: 286 GYERSN-PTESLYVFSMMESEGFSPNCFTFTSIMAACATLAFLNCGQQIHGRIIRRGLDG 344

Query: 351 NTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDM 410
           N  + ++LIDMYSKCG + D  QVF    ++ + + W  M+     HGY E+A+ LF  M
Sbjct: 345 NLALSNALIDMYSKCGNIADSHQVFGGM-SRRDLVSWTAMMIGYGTHGYGEEAVELFDKM 403

Query: 411 VRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGC 470
           VRS ++PD++    IL+AC+H+GLV EGL YF+ M  D  I P+QE + C+++LL +AG 
Sbjct: 404 VRSGIRPDRVVFMAILSACSHAGLVDEGLRYFKLMVGDYNISPDQEIYGCVVDLLGRAGK 463

Query: 471 SDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSI 530
            ++    +E MP++ D  +W    G C+ H   ++G+    +++D  P  + T+ +LS+I
Sbjct: 464 VEEAYELIESMPFKPDECVWGPFLGACKAHTFPNLGKLAAHRILDLRPHMAGTYVMLSNI 523

Query: 531 YSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQL 590
           Y+A GK     ++R+L+     KKE   SW+E+ N V++F V D +    + +Y VLE L
Sbjct: 524 YAADGKWGEFARLRKLMKRMGNKKETGRSWVEVGNHVYSFVVGDEVGSKIEGIYQVLENL 583

Query: 591 AGQMGEDA--PSLD 602
            G M E    P LD
Sbjct: 584 IGHMKESGYVPDLD 597



 Score =  134 bits (337), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 81/309 (26%), Positives = 139/309 (44%), Gaps = 34/309 (11%)

Query: 123 NNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSIS 182
             ++  Y   G++  AR LFD M ERDVV+W  MI GY            +  +    + 
Sbjct: 47  TTLIKSYFGKGLIGEARTLFDEMPERDVVAWTVMIAGYTSCNNHTHAWMVFCEMMNEELD 106

Query: 183 CNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCG-ELSDARR 241
            N F+ + +L  C  ++ L   R VHG  +  G    + + ++++D YA C   + DA  
Sbjct: 107 PNAFTISSVLKACKGMKCLSYGRLVHGLAIKHGLDGFIYVDNALMDMYATCCVSMDDACM 166

Query: 242 LFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKA 301
           +F     ++ ++WTT+++GY    D                               G   
Sbjct: 167 VFRGIHLKNEVSWTTLIAGYTHRDD-------------------------------GYGG 195

Query: 302 LELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDM 361
           L +F +M++  +  N  +FS  + AC SI S   G+Q+H  + +  F SN  VM+S++DM
Sbjct: 196 LRVFRQMLLEEVELNPFSFSIAVRACTSIGSHTFGEQLHAAVTKHGFESNLPVMNSILDM 255

Query: 362 YSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKIT 421
           Y +C C ++  + F    N+ + + WNT+I+   +    E ++ +F  M      P+  T
Sbjct: 256 YCRCSCFSEANRYF-YEMNQRDLITWNTLIAGYERSNPTE-SLYVFSMMESEGFSPNCFT 313

Query: 422 LAVILNACT 430
              I+ AC 
Sbjct: 314 FTSIMAACA 322



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 60/180 (33%), Positives = 92/180 (51%), Gaps = 2/180 (1%)

Query: 255 TTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIR 314
           TT++  Y   G +  A  LF+EMPE++ V+WT +IAGYT       A  +F  MM   + 
Sbjct: 47  TTLIKSYFGKGLIGEARTLFDEMPERDVVAWTVMIAGYTSCNNHTHAWMVFCEMMNEELD 106

Query: 315 PNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGC-LNDGRQ 373
           PN  T SS L AC  +  L +G+ VHG  I+        V ++L+DMY+ C   ++D   
Sbjct: 107 PNAFTISSVLKACKGMKCLSYGRLVHGLAIKHGLDGFIYVDNALMDMYATCCVSMDDACM 166

Query: 374 VFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSG 433
           VF     K N + W T+I+  T        +R+F  M+   V+ +  + ++ + ACT  G
Sbjct: 167 VFRGIHLK-NEVSWTTLIAGYTHRDDGYGGLRVFRQMLLEEVELNPFSFSIAVRACTSIG 225



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 47/173 (27%), Positives = 85/173 (49%), Gaps = 12/173 (6%)

Query: 10  INRKNLPN-NCLIQSFLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSL 68
           +N+++L   N LI  +     +   +E++    ++   G      T   I+  CA    L
Sbjct: 272 MNQRDLITWNTLIAGY----ERSNPTESLYVFSMMESEGFSPNCFTFTSIMAACATLAFL 327

Query: 69  KLGKRVHLHLKLTQRKTPTTF-LSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLS 127
             G+++H   ++ +R       LSN LI MY KCG+  D+ +VF  +  ++L S+  M+ 
Sbjct: 328 NCGQQIHG--RIIRRGLDGNLALSNALIDMYSKCGNIADSHQVFGGMSRRDLVSWTAMMI 385

Query: 128 GYANLGMMKHARNLFDNMAER----DVVSWNTMIIGYAKSGAVEEGLKFYKVL 176
           GY   G  + A  LFD M       D V +  ++   + +G V+EGL+++K++
Sbjct: 386 GYGTHGYGEEAVELFDKMVRSGIRPDRVVFMAILSACSHAGLVDEGLRYFKLM 438


>gi|414586383|tpg|DAA36954.1| TPA: hypothetical protein ZEAMMB73_991125 [Zea mays]
          Length = 1021

 Score =  295 bits (756), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 176/586 (30%), Positives = 299/586 (51%), Gaps = 42/586 (7%)

Query: 54   TLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDK 113
            T   +L  C    SL LG++VH  + +        F++N ++ MY K G+   A+ +F  
Sbjct: 427  TFVSVLGACINLYSLDLGRQVHC-ITIKNGMDADLFVANAMLDMYSKLGAIDVAKALFSL 485

Query: 114  IPVKNLFSYNNMLSGYANLGMMKHARNLFDNMA----ERDVVSWNTMIIGYAKSGAVEEG 169
            IPVK+  S+N ++ G A+      A N+   M       D VS+ T I   +   A+E G
Sbjct: 486  IPVKDSVSWNALIVGLAHNEEEGEAINMLKRMKFYGIALDEVSFATAINACSNIWAIETG 545

Query: 170  LKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQV----------LVTGFLSN 219
             + +    ++++  N    + ++ +  K  +++ +R+V   V          L+TG + N
Sbjct: 546  KQIHSASIKYNVCSNHAVGSSLIDLYSKFGDVESSRKVLAHVDASSIVPINALITGLVQN 605

Query: 220  -------VVISSSIVDAYAK-----CGELSDARRLFDETDARDVLTWT------------ 255
                    +    + D +          LS   R       + V  +T            
Sbjct: 606  NREDEAIELFQQVLKDGFKPSNFTFTSILSGCTRPVSSVIGKQVHCYTLKSAILNQDTSL 665

Query: 256  --TMVSGYAKLGDMESASKLFNEMPE-KNPVSWTTLIAGYTRNGLGQKALELFTRMMILR 312
              ++V  Y K   +E A+KL  E+P+ KN V WT  I+GY +NG   ++L +F RM    
Sbjct: 666  GISLVGIYLKCKLLEDANKLLEEVPDHKNLVEWTATISGYAQNGYSVQSLVMFWRMRSYD 725

Query: 313  IRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGR 372
            +R ++ TF+S L AC+ + +L  GK++HG ++++ F S     S+L+DMYSKCG +    
Sbjct: 726  VRSDEATFTSVLKACSEMAALTDGKEIHGLIVKSGFVSYETATSALMDMYSKCGDVISSF 785

Query: 373  QVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHS 432
            ++F    N++N M WN+MI    ++GY  +A+ LF  M  S +KPD +TL  +L AC+H+
Sbjct: 786  EIFKELKNRQNIMPWNSMIVGFAKNGYANEALLLFQKMQESQIKPDDVTLLGVLIACSHA 845

Query: 433  GLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNA 492
            GL+ EGL +F+SM+   GI+P  +H+ACLI+LL + G   +    ++++P+  D  +W  
Sbjct: 846  GLISEGLHFFDSMSQVYGIVPRVDHYACLIDLLGRGGHLQKAQEVIDQLPFRADGVIWAT 905

Query: 493  LHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQF 552
                C++H + + G+    +L++  PQSS+T+  LSS+++A G     +  R+ + E+  
Sbjct: 906  YLAACQMHKDEERGKVAAKKLVEMEPQSSSTYVFLSSLHAAAGNWVEAKVAREAMREKGV 965

Query: 553  KKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQMGEDA 598
             K    SWI + NK   F V D+ HP    +Y +L+ L G M +D 
Sbjct: 966  MKFPGCSWITVGNKQSVFVVQDTHHPDALSIYKMLDDLTGMMNKDG 1011



 Score =  181 bits (459), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 110/375 (29%), Positives = 190/375 (50%), Gaps = 49/375 (13%)

Query: 160 YAKSGAVEEGLKFYKVLR-RFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLS 218
           +A+SG+  + L  ++ +R     + ++F  A +L+ C +L  L+  RQVH  VL +GF S
Sbjct: 131 HARSGSPRDVLDAFQRIRCSIGSTPDQFGIAVVLSACSRLGALEHGRQVHCDVLKSGFCS 190

Query: 219 NVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEM- 277
           +V   + +VD YAKCGE+ DARR+FD     D + WT+M++GY ++G  + A  LF+ M 
Sbjct: 191 SVFCQAGLVDMYAKCGEVDDARRMFDGIACPDTICWTSMIAGYHRVGRYQQALALFSRME 250

Query: 278 -----PEK-----------------------------NPVSWTTLIAGYTRNGLGQKALE 303
                P++                             + V+W  +IA Y+++GL  +   
Sbjct: 251 KMGSVPDQVTCVTIISTLASMGRLGDARTLLKRIRMTSTVAWNAVIASYSQSGLDSEVFG 310

Query: 304 LFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYS 363
           L+  M    + P + TF+S L A A++ +   G+Q+H   ++    +N  V SSLI++Y 
Sbjct: 311 LYKDMKKQGLMPTRSTFASILSAAANMTAFDEGRQIHATAVKHGLDANVFVGSSLINLYV 370

Query: 364 KCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLA 423
           K GC++D ++VFD +  K N ++WN ++    Q+   E+ I++F  M R+ ++ D  T  
Sbjct: 371 KHGCISDAKKVFDFSTEK-NIVMWNAILYGFVQNELQEETIQMFQYMRRADLEADDFTFV 429

Query: 424 VILNACTHSGLVQEG-----LTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQL 478
            +L AC +   +  G     +T    M  DL  + N      ++++ ++ G  D      
Sbjct: 430 SVLGACINLYSLDLGRQVHCITIKNGMDADL-FVAN-----AMLDMYSKLGAIDVAKALF 483

Query: 479 EKMPYEHDSYLWNAL 493
             +P + DS  WNAL
Sbjct: 484 SLIPVK-DSVSWNAL 497



 Score =  169 bits (427), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 112/450 (24%), Positives = 202/450 (44%), Gaps = 69/450 (15%)

Query: 55  LAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKI 114
           +A +L  C+   +L+ G++VH  + L      + F    L+ MY KCG   DAR++FD I
Sbjct: 160 IAVVLSACSRLGALEHGRQVHCDV-LKSGFCSSVFCQAGLVDMYAKCGEVDDARRMFDGI 218

Query: 115 PVKNLFSYNNMLSGY-----------------------------------ANLGMMKHAR 139
              +   + +M++GY                                   A++G +  AR
Sbjct: 219 ACPDTICWTSMIAGYHRVGRYQQALALFSRMEKMGSVPDQVTCVTIISTLASMGRLGDAR 278

Query: 140 NLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLE 199
            L   +     V+WN +I  Y++SG   E    YK +++  +     +FA IL+    + 
Sbjct: 279 TLLKRIRMTSTVAWNAVIASYSQSGLDSEVFGLYKDMKKQGLMPTRSTFASILSAAANMT 338

Query: 200 ELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVS 259
                RQ+H   +  G  +NV + SS+++ Y K G +SDA+                   
Sbjct: 339 AFDEGRQIHATAVKHGLDANVFVGSSLINLYVKHGCISDAK------------------- 379

Query: 260 GYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHT 319
                       K+F+   EKN V W  ++ G+ +N L ++ +++F  M    +  +  T
Sbjct: 380 ------------KVFDFSTEKNIVMWNAILYGFVQNELQEETIQMFQYMRRADLEADDFT 427

Query: 320 FSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTD 379
           F S L AC ++ SL  G+QVH   I+    ++  V ++++DMYSK G ++  + +F L  
Sbjct: 428 FVSVLGACINLYSLDLGRQVHCITIKNGMDADLFVANAMLDMYSKLGAIDVAKALFSLIP 487

Query: 380 NKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGL 439
            K+ S+ WN +I  L  +  + +AI +   M    +  D+++ A  +NAC++   ++ G 
Sbjct: 488 VKD-SVSWNALIVGLAHNEEEGEAINMLKRMKFYGIALDEVSFATAINACSNIWAIETG- 545

Query: 440 TYFESMTHDLGIIPNQEHHACLIELLAQAG 469
               S +    +  N    + LI+L ++ G
Sbjct: 546 KQIHSASIKYNVCSNHAVGSSLIDLYSKFG 575



 Score =  162 bits (411), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 110/418 (26%), Positives = 201/418 (48%), Gaps = 34/418 (8%)

Query: 14  NLPNNCLIQSFLS-LISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGK 72
           ++P+     + +S L S G+L +A + L  +           +A   Q   +S+   L K
Sbjct: 254 SVPDQVTCVTIISTLASMGRLGDARTLLKRIRMTSTVAWNAVIASYSQSGLDSEVFGLYK 313

Query: 73  RVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANL 132
            +     +  R T  + LS       F  G  + A  V   +   N+F  +++++ Y   
Sbjct: 314 DMKKQGLMPTRSTFASILSAAANMTAFDEGRQIHATAVKHGLDA-NVFVGSSLINLYVKH 372

Query: 133 GMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGIL 192
           G +  A+ +FD   E+++V WN ++ G+ ++   EE ++ ++ +RR  +  ++F+F  +L
Sbjct: 373 GCISDAKKVFDFSTEKNIVMWNAILYGFVQNELQEETIQMFQYMRRADLEADDFTFVSVL 432

Query: 193 TICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVL 252
             C+ L  L L RQVH   +  G  +++ ++++++D Y+K                    
Sbjct: 433 GACINLYSLDLGRQVHCITIKNGMDADLFVANAMLDMYSK-------------------- 472

Query: 253 TWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILR 312
                      LG ++ A  LF+ +P K+ VSW  LI G   N    +A+ +  RM    
Sbjct: 473 -----------LGAIDVAKALFSLIPVKDSVSWNALIVGLAHNEEEGEAINMLKRMKFYG 521

Query: 313 IRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGR 372
           I  ++ +F++ + AC++I +++ GKQ+H   I+ N  SN  V SSLID+YSK G +   R
Sbjct: 522 IALDEVSFATAINACSNIWAIETGKQIHSASIKYNVCSNHAVGSSLIDLYSKFGDVESSR 581

Query: 373 QVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACT 430
           +V    D      + N +I+ L Q+  +++AI LF  +++   KP   T   IL+ CT
Sbjct: 582 KVLAHVDASSIVPI-NALITGLVQNNREDEAIELFQQVLKDGFKPSNFTFTSILSGCT 638



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 93/398 (23%), Positives = 169/398 (42%), Gaps = 80/398 (20%)

Query: 15  LPNNCLIQSFLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRV 74
           +P N LI     L+   +  EAI     + + G +    T   IL  C    S  +GK+V
Sbjct: 593 VPINALITG---LVQNNREDEAIELFQQVLKDGFKPSNFTFTSILSGCTRPVSSVIGKQV 649

Query: 75  HLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPV-KNLFSYNNMLSGYANLG 133
           H +   +      T L   L+ +Y KC    DA K+ +++P  KNL  +   +SGYA  G
Sbjct: 650 HCYTLKSAILNQDTSLGISLVGIYLKCKLLEDANKLLEEVPDHKNLVEWTATISGYAQNG 709

Query: 134 MMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILT 193
                                          +V+  + F++ +R + +  +E +F  +L 
Sbjct: 710 Y------------------------------SVQSLVMFWR-MRSYDVRSDEATFTSVLK 738

Query: 194 ICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDAR-DVL 252
            C ++  L   +++HG ++ +GF+S    +S+++D Y+KCG++  +  +F E   R +++
Sbjct: 739 ACSEMAALTDGKEIHGLIVKSGFVSYETATSALMDMYSKCGDVISSFEIFKELKNRQNIM 798

Query: 253 TWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILR 312
            W +M+ G+AK                               NG   +AL LF +M   +
Sbjct: 799 PWNSMIVGFAK-------------------------------NGYANEALLLFQKMQESQ 827

Query: 313 IRPNQHTFSSCLCACASIVSLKHG-------KQVHGFLIRTNFRSNTIVMSSLIDMYSKC 365
           I+P+  T    L AC+    +  G        QV+G + R +        + LID+  + 
Sbjct: 828 IKPDDVTLLGVLIACSHAGLISEGLHFFDSMSQVYGIVPRVDH------YACLIDLLGRG 881

Query: 366 GCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQA 403
           G L   ++V D    + + ++W T ++A   H  +E+ 
Sbjct: 882 GHLQKAQEVIDQLPFRADGVIWATYLAACQMHKDEERG 919


>gi|414586388|tpg|DAA36959.1| TPA: hypothetical protein ZEAMMB73_269943 [Zea mays]
          Length = 643

 Score =  295 bits (756), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 178/581 (30%), Positives = 293/581 (50%), Gaps = 51/581 (8%)

Query: 22  QSFLSLISKGQLSEAIS-SLDLLAQRGIR--LPAETLAFILQQCAESKSLKLGKRVHLHL 78
           Q   +  ++G   +A+S  L + A    R  +PA +L   L+ CA      LG  +H  L
Sbjct: 18  QQIRAAAAEGHFCDAVSLFLRMRASAAPRSSVPA-SLPAALKSCAALGLSALGASLHA-L 75

Query: 79  KLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYN-NMLSGYANLGMMKH 137
            +        F +N L+++Y  C           K+P   L S    ++    +    + 
Sbjct: 76  AIRSGAFADRFTANALLNLY--C-----------KVPCSYLDSTGVAIVDVPGSSTAFES 122

Query: 138 ARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVK 197
            R +FD M ERDVVSWNT+++G A+ G   E L F + + R     + F+ + +L I  +
Sbjct: 123 VRKVFDEMIERDVVSWNTLVLGCAEEGRHHEALGFVRKMCREGFRPDSFTLSTVLPIFAE 182

Query: 198 LEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTM 257
             ++K   +VHG     GF S+V + SS++D YA C                        
Sbjct: 183 CADVKRGLEVHGFAFRNGFDSDVFVGSSLIDMYANCTR---------------------- 220

Query: 258 VSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQ 317
                     + + K+F+ +P ++ + W +L+AG  +NG  ++AL +F RM+   +RP  
Sbjct: 221 ---------TDYSVKVFDNLPVRDHILWNSLLAGCAQNGSVEEALGIFRRMLQAGVRPVP 271

Query: 318 HTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDL 377
            TFSS +  C ++ SL+ GKQ+H ++I   F  N  + SSLIDMY KCG ++    +FD 
Sbjct: 272 VTFSSLIPVCGNLASLRFGKQLHAYVICGGFEDNVFISSSLIDMYCKCGEISIAHCIFDK 331

Query: 378 TDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQE 437
             + +  + W  MI     HG   +A+ LF  M   + KP+ IT   +L AC+H+GLV +
Sbjct: 332 MSSPD-VVSWTAMIMGYALHGPAREALVLFERMELGNAKPNHITFLAVLTACSHAGLVDK 390

Query: 438 GLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVC 497
           G  YF+SM++  GI+P  EH A L + L +AG  D+  N + KM  +  + +W+ L   C
Sbjct: 391 GWKYFKSMSNHYGIVPTLEHFAALADTLGRAGELDEAYNFISKMQIKPTASVWSTLLRAC 450

Query: 498 RIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQA 557
           R+H N  +  +V  ++++  P+S  +H +LS++YSA G+      +R+ + ++  KK+ A
Sbjct: 451 RVHKNTMLAEEVAKKIMELEPRSIGSHVVLSNMYSASGRWNEAAHLRESMRKKGMKKDPA 510

Query: 558 ISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQMGEDA 598
            SWIE+++K+H F   D  HP  D +   L   + QM  + 
Sbjct: 511 CSWIEVKSKLHVFVAHDRSHPWYDRIIDALNAFSEQMAREG 551


>gi|255539110|ref|XP_002510620.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223551321|gb|EEF52807.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 708

 Score =  295 bits (756), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 182/600 (30%), Positives = 294/600 (49%), Gaps = 80/600 (13%)

Query: 78  LKLTQRKTPTTFLSN-HLISMYFKCGSDVD-------ARKVFDKIP-VKNLFSYNNMLSG 128
           ++L QR      L N H  S  F   S++        A  V  K+    ++F  +++L+ 
Sbjct: 96  MELFQRMRADNILPNAHTFSGIFTAASNLSSIFFGQQAHAVAIKMACFYDVFVGSSLLNM 155

Query: 129 YANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSF 188
           Y   G++  AR +FD M ER+ V+W TMI GYA      E  + ++++RR     NEF+F
Sbjct: 156 YCKAGLLFEAREVFDRMPERNEVTWATMISGYAIQRLAGEAFEVFELMRREEEDVNEFAF 215

Query: 189 AGILTICVKLEELKLTRQVHGQVLVTGFL------------------------------- 217
             +L+     E +   +Q+H   + TG L                               
Sbjct: 216 TSVLSALAVPEFVDSGKQIHCLAVKTGLLVFLSILNALVTMYAKCGSLDDSLQVFEMSND 275

Query: 218 SNVVISSSIVDAYAKCGELSDARRLFDE--------------------TDA--------- 248
            N +  S+++  YA+ G+   A +LF                      +DA         
Sbjct: 276 KNSITWSAMITGYAQSGDSHKALKLFSRMHFAGINPSEFTLVGVLNACSDACAVEEGKQV 335

Query: 249 ----------RDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLG 298
                       +   T +V  YAK G  E A K FN + + + V WT++IAGY +NG  
Sbjct: 336 HNYLLKLGFESQLYIMTALVDMYAKSGVTEDARKGFNYLQQPDLVLWTSMIAGYVQNGEN 395

Query: 299 QKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSL 358
           + AL L+ RM +  I PN+ T +S L AC+++ +   G+Q+H   I+        + S+L
Sbjct: 396 EDALSLYCRMQMEGILPNELTMASVLKACSNLAAFDQGRQIHARTIKYGLGLEVTIGSAL 455

Query: 359 IDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPD 418
             MY+KCG L +G  VF     ++  + WN MIS L+Q+GY ++A+ LF +M +   KPD
Sbjct: 456 STMYAKCGNLEEGNIVFRRMPERD-IISWNAMISGLSQNGYGKEALELFEEMRQQDTKPD 514

Query: 419 KITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQL 478
            +T   +L+AC+H GLV  G  YF  M  + G++P  EH+AC++++L++AG   +    +
Sbjct: 515 DVTFVNVLSACSHMGLVDSGWLYFRMMFDEFGLLPKVEHYACMVDVLSRAGKLYEAKEFI 574

Query: 479 EKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGR 538
           E    +H   LW  L G CR + N ++G    ++L++   Q S+ + LLS IY+ALG+  
Sbjct: 575 ESTTIDHGLCLWRILLGACRNYRNYELGAYAGEKLMELGSQESSAYVLLSGIYTALGRPE 634

Query: 539 LVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQMGEDA 598
            VE+VR ++  R   KE   SWIE+++ VH F V D +HP    + + + +L+ QM ++ 
Sbjct: 635 DVERVRSMMKVRGVSKEPGCSWIELKSNVHVFVVGDQMHPCIGEIRTEILRLSKQMKDEG 694



 Score =  165 bits (418), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 114/437 (26%), Positives = 198/437 (45%), Gaps = 67/437 (15%)

Query: 59  LQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKN 118
           L Q    KSL+ G+ +H  +      +   +L+N LI+ Y KC                 
Sbjct: 14  LVQFTHQKSLQKGRALHAQIIKLASSSSCIYLANSLINFYAKCCH--------------- 58

Query: 119 LFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEG--LKFYKVL 176
                           +  A+ +FD +  +DV+SWN +I GY++ G       ++ ++ +
Sbjct: 59  ----------------LPKAKLVFDRIHNKDVISWNCLINGYSQQGPTGSSFVMELFQRM 102

Query: 177 RRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGEL 236
           R  +I  N  +F+GI T    L  +   +Q H   +      +V + SS+++ Y K G L
Sbjct: 103 RADNILPNAHTFSGIFTAASNLSSIFFGQQAHAVAIKMACFYDVFVGSSLLNMYCKAGLL 162

Query: 237 SDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNG 296
            +AR +FD    R+ +TW TM+SGYA                          +AG     
Sbjct: 163 FEAREVFDRMPERNEVTWATMISGYA-----------------------IQRLAG----- 194

Query: 297 LGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMS 356
              +A E+F  M       N+  F+S L A A    +  GKQ+H   ++T       +++
Sbjct: 195 ---EAFEVFELMRREEEDVNEFAFTSVLSALAVPEFVDSGKQIHCLAVKTGLLVFLSILN 251

Query: 357 SLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVK 416
           +L+ MY+KCG L+D  QVF+++++K NS+ W+ MI+   Q G   +A++LF  M  + + 
Sbjct: 252 ALVTMYAKCGSLDDSLQVFEMSNDK-NSITWSAMITGYAQSGDSHKALKLFSRMHFAGIN 310

Query: 417 PDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMN 476
           P + TL  +LNAC+ +  V+EG      +   LG          L+++ A++G ++    
Sbjct: 311 PSEFTLVGVLNACSDACAVEEGKQVHNYLL-KLGFESQLYIMTALVDMYAKSGVTEDARK 369

Query: 477 QLEKMPYEHDSYLWNAL 493
               +  + D  LW ++
Sbjct: 370 GFNYLQ-QPDLVLWTSM 385



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 83/349 (23%), Positives = 144/349 (41%), Gaps = 73/349 (20%)

Query: 51  PAE-TLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARK 109
           P+E TL  +L  C+++ +++ GK+VH +L L        ++   L+ MY K G   DARK
Sbjct: 311 PSEFTLVGVLNACSDACAVEEGKQVHNYL-LKLGFESQLYIMTALVDMYAKSGVTEDARK 369

Query: 110 VFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEG 169
            F+ +   +L  + +M++                               GY ++G  E+ 
Sbjct: 370 GFNYLQQPDLVLWTSMIA-------------------------------GYVQNGENEDA 398

Query: 170 LKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDA 229
           L  Y  ++   I  NE + A +L  C  L      RQ+H + +  G    V I S++   
Sbjct: 399 LSLYCRMQMEGILPNELTMASVLKACSNLAAFDQGRQIHARTIKYGLGLEVTIGSALSTM 458

Query: 230 YAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLI 289
           YAKCG L +   +F     RD+++W  M+SG ++                          
Sbjct: 459 YAKCGNLEEGNIVFRRMPERDIISWNAMISGLSQ-------------------------- 492

Query: 290 AGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFR 349
                NG G++ALELF  M     +P+  TF + L AC+ +  +  G        R  F 
Sbjct: 493 -----NGYGKEALELFEEMRQQDTKPDDVTFVNVLSACSHMGLVDSG----WLYFRMMFD 543

Query: 350 SNTIV-----MSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISA 393
              ++      + ++D+ S+ G L + ++  + T       LW  ++ A
Sbjct: 544 EFGLLPKVEHYACMVDVLSRAGKLYEAKEFIESTTIDHGLCLWRILLGA 592



 Score = 62.4 bits (150), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 45/175 (25%), Positives = 89/175 (50%), Gaps = 8/175 (4%)

Query: 8   RGINRKNLPNNCLIQSFLS-LISKGQLSEAISSLDLLAQRGIRLPAE-TLAFILQQCAES 65
           +G N    P+  L  S ++  +  G+  +A+S    +   GI LP E T+A +L+ C+  
Sbjct: 369 KGFNYLQQPDLVLWTSMIAGYVQNGENEDALSLYCRMQMEGI-LPNELTMASVLKACSNL 427

Query: 66  KSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNM 125
            +   G+++H            T + + L +MY KCG+  +   VF ++P +++ S+N M
Sbjct: 428 AAFDQGRQIHARTIKYGLGLEVT-IGSALSTMYAKCGNLEEGNIVFRRMPERDIISWNAM 486

Query: 126 LSGYANLGMMKHARNLFDNMAERDV----VSWNTMIIGYAKSGAVEEGLKFYKVL 176
           +SG +  G  K A  LF+ M ++D     V++  ++   +  G V+ G  +++++
Sbjct: 487 ISGLSQNGYGKEALELFEEMRQQDTKPDDVTFVNVLSACSHMGLVDSGWLYFRMM 541


>gi|334185027|ref|NP_186882.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218546764|sp|Q9FWA6.2|PP207_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g02330
 gi|332640272|gb|AEE73793.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 903

 Score =  295 bits (756), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 166/553 (30%), Positives = 284/553 (51%), Gaps = 46/553 (8%)

Query: 43  LAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCG 102
           L   G+     +L+ + + CA  K L  G +++  L +    +    ++N  I MY KC 
Sbjct: 373 LMSSGLGFDEISLSGVFRACALVKGLSEGLQIY-GLAIKSSLSLDVCVANAAIDMYGKCQ 431

Query: 103 SDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAK 162
           +  +A +VFD+                               M  RD VSWN +I  + +
Sbjct: 432 ALAEAFRVFDE-------------------------------MRRRDAVSWNAIIAAHEQ 460

Query: 163 SGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVI 222
           +G   E L  +  + R  I  +EF+F  IL  C     L    ++H  ++ +G  SN  +
Sbjct: 461 NGKGYETLFLFVSMLRSRIEPDEFTFGSILKACTG-GSLGYGMEIHSSIVKSGMASNSSV 519

Query: 223 SSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNP 282
             S++D Y+KCG + +A ++      R  ++           G ME   K+ N+  ++  
Sbjct: 520 GCSLIDMYSKCGMIEEAEKIHSRFFQRANVS-----------GTMEELEKMHNKRLQEMC 568

Query: 283 VSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGF 342
           VSW ++I+GY      + A  LFTRMM + I P++ T+++ L  CA++ S   GKQ+H  
Sbjct: 569 VSWNSIISGYVMKEQSEDAQMLFTRMMEMGITPDKFTYATVLDTCANLASAGLGKQIHAQ 628

Query: 343 LIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQ 402
           +I+   +S+  + S+L+DMYSKCG L+D R +F+    + + + WN MI     HG  E+
Sbjct: 629 VIKKELQSDVYICSTLVDMYSKCGDLHDSRLMFE-KSLRRDFVTWNAMICGYAHHGKGEE 687

Query: 403 AIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLI 462
           AI+LF  M+  ++KP+ +T   IL AC H GL+ +GL YF  M  D G+ P   H++ ++
Sbjct: 688 AIQLFERMILENIKPNHVTFISILRACAHMGLIDKGLEYFYMMKRDYGLDPQLPHYSNMV 747

Query: 463 ELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIH-GNIDMGRKVVDQLIDQNPQSS 521
           ++L ++G   + +  + +MP+E D  +W  L GVC IH  N+++  +    L+  +PQ S
Sbjct: 748 DILGKSGKVKRALELIREMPFEADDVIWRTLLGVCTIHRNNVEVAEEATAALLRLDPQDS 807

Query: 522 ATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRD 581
           + + LLS++Y+  G    V  +R+ +   + KKE   SW+E+++++H F V D  HP  +
Sbjct: 808 SAYTLLSNVYADAGMWEKVSDLRRNMRGFKLKKEPGCSWVELKDELHVFLVGDKAHPRWE 867

Query: 582 VLYSVLEQLAGQM 594
            +Y  L  +  +M
Sbjct: 868 EIYEELGLIYSEM 880



 Score =  202 bits (515), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 115/388 (29%), Positives = 213/388 (54%), Gaps = 33/388 (8%)

Query: 55  LAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKI 114
            +F+ ++CA+  +L+LGK+ H H+ ++  + PTTF+ N L+ +Y      V A  VFDK+
Sbjct: 51  FSFVFKECAKQGALELGKQAHAHMIISGFR-PTTFVLNCLLQVYTNSRDFVSASMVFDKM 109

Query: 115 PVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYK 174
           P++++ S+N M++GY+    M  A + F+ M  RDVVSWN+M+ GY ++G   + ++ + 
Sbjct: 110 PLRDVVSWNKMINGYSKSNDMFKANSFFNMMPVRDVVSWNSMLSGYLQNGESLKSIEVFV 169

Query: 175 VLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCG 234
            + R  I  +  +FA IL +C  LE+  L  Q+HG V+  G  ++VV +S+++D YAK  
Sbjct: 170 DMGREGIEFDGRTFAIILKVCSFLEDTSLGMQIHGIVVRVGCDTDVVAASALLDMYAKGK 229

Query: 235 ELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTR 294
              ++ R+F     ++ ++W+ ++                               AG  +
Sbjct: 230 RFVESLRVFQGIPEKNSVSWSAII-------------------------------AGCVQ 258

Query: 295 NGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIV 354
           N L   AL+ F  M  +    +Q  ++S L +CA++  L+ G Q+H   ++++F ++ IV
Sbjct: 259 NNLLSLALKFFKEMQKVNAGVSQSIYASVLRSCAALSELRLGGQLHAHALKSDFAADGIV 318

Query: 355 MSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSS 414
            ++ +DMY+KC  + D + +FD ++N  N   +N MI+  +Q  +  +A+ LFH ++ S 
Sbjct: 319 RTATLDMYAKCDNMQDAQILFDNSENL-NRQSYNAMITGYSQEEHGFKALLLFHRLMSSG 377

Query: 415 VKPDKITLAVILNACTHSGLVQEGLTYF 442
           +  D+I+L+ +  AC     + EGL  +
Sbjct: 378 LGFDEISLSGVFRACALVKGLSEGLQIY 405



 Score =  155 bits (393), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 113/441 (25%), Positives = 202/441 (45%), Gaps = 69/441 (15%)

Query: 32  QLSEAISSLDL---LAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTT 88
           Q  E++ S+++   + + GI     T A IL+ C+  +   LG ++H  +      T   
Sbjct: 157 QNGESLKSIEVFVDMGREGIEFDGRTFAIILKVCSFLEDTSLGMQIHGIVVRVGCDTDVV 216

Query: 89  FLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAER 148
             ++ L+ MY K    V++ +VF  IP                               E+
Sbjct: 217 -AASALLDMYAKGKRFVESLRVFQGIP-------------------------------EK 244

Query: 149 DVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVH 208
           + VSW+ +I G  ++  +   LKF+K +++ +   ++  +A +L  C  L EL+L  Q+H
Sbjct: 245 NSVSWSAIIAGCVQNNLLSLALKFFKEMQKVNAGVSQSIYASVLRSCAALSELRLGGQLH 304

Query: 209 GQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDME 268
              L + F ++ ++ ++ +D YAKC                                +M+
Sbjct: 305 AHALKSDFAADGIVRTATLDMYAKCD-------------------------------NMQ 333

Query: 269 SASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACA 328
            A  LF+     N  S+  +I GY++   G KAL LF R+M   +  ++ + S    ACA
Sbjct: 334 DAQILFDNSENLNRQSYNAMITGYSQEEHGFKALLLFHRLMSSGLGFDEISLSGVFRACA 393

Query: 329 SIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWN 388
            +  L  G Q++G  I+++   +  V ++ IDMY KC  L +  +VFD    + +++ WN
Sbjct: 394 LVKGLSEGLQIYGLAIKSSLSLDVCVANAAIDMYGKCQALAEAFRVFDEM-RRRDAVSWN 452

Query: 389 TMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHD 448
            +I+A  Q+G   + + LF  M+RS ++PD+ T   IL ACT  G +  G+    S+   
Sbjct: 453 AIIAAHEQNGKGYETLFLFVSMLRSRIEPDEFTFGSILKACT-GGSLGYGMEIHSSIVKS 511

Query: 449 LGIIPNQEHHACLIELLAQAG 469
            G+  N      LI++ ++ G
Sbjct: 512 -GMASNSSVGCSLIDMYSKCG 531



 Score =  145 bits (367), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 131/520 (25%), Positives = 213/520 (40%), Gaps = 115/520 (22%)

Query: 56  AFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIP 115
           A +L+ CA    L+LG ++H H  L         +    + MY KC +            
Sbjct: 285 ASVLRSCAALSELRLGGQLHAH-ALKSDFAADGIVRTATLDMYAKCDN------------ 331

Query: 116 VKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKV 175
                              M+ A+ LFDN    +  S+N MI GY++     + L  +  
Sbjct: 332 -------------------MQDAQILFDNSENLNRQSYNAMITGYSQEEHGFKALLLFHR 372

Query: 176 LRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGE 235
           L    +  +E S +G+   C  ++ L    Q++G  + +    +V ++++ +D Y KC  
Sbjct: 373 LMSSGLGFDEISLSGVFRACALVKGLSEGLQIYGLAIKSSLSLDVCVANAAIDMYGKCQA 432

Query: 236 LSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRN 295
           L++A R+FDE   RD +                               SW  +IA + +N
Sbjct: 433 LAEAFRVFDEMRRRDAV-------------------------------SWNAIIAAHEQN 461

Query: 296 GLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVM 355
           G G + L LF  M+  RI P++ TF S L AC    SL +G ++H  ++++   SN+ V 
Sbjct: 462 GKGYETLFLFVSMLRSRIEPDEFTFGSILKACTG-GSLGYGMEIHSSIVKSGMASNSSVG 520

Query: 356 SSLIDMYSKCGCLNDGRQV----------------FDLTDNK---ENSMLWNTMISALTQ 396
            SLIDMYSKCG + +  ++                 +   NK   E  + WN++IS    
Sbjct: 521 CSLIDMYSKCGMIEEAEKIHSRFFQRANVSGTMEELEKMHNKRLQEMCVSWNSIISGYVM 580

Query: 397 HGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQE 456
               E A  LF  M+   + PDK T A +L+ C +  L   GL               ++
Sbjct: 581 KEQSEDAQMLFTRMMEMGITPDKFTYATVLDTCAN--LASAGL--------------GKQ 624

Query: 457 HHACLI--ELLAQAGCSDQLMNQLEKMPYEHDSYL------------WNALHGVCRIHGN 502
            HA +I  EL +       L++   K    HDS L            WNA+      HG 
Sbjct: 625 IHAQVIKKELQSDVYICSTLVDMYSKCGDLHDSRLMFEKSLRRDFVTWNAMICGYAHHGK 684

Query: 503 IDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEK 542
            +   ++ +++I +N + +  H    SI  A     L++K
Sbjct: 685 GEEAIQLFERMILENIKPN--HVTFISILRACAHMGLIDK 722



 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 82/286 (28%), Positives = 145/286 (50%), Gaps = 8/286 (2%)

Query: 148 RDVVSWN---TMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLT 204
           R VVS+N   T  I Y +  +      F   +   S+S   FSF  +   C K   L+L 
Sbjct: 12  RSVVSFNRCLTEKISYRRVPSFSYFTDFLNQVN--SVSTTNFSF--VFKECAKQGALELG 67

Query: 205 RQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKL 264
           +Q H  ++++GF     + + ++  Y    +   A  +FD+   RDV++W  M++GY+K 
Sbjct: 68  KQAHAHMIISGFRPTTFVLNCLLQVYTNSRDFVSASMVFDKMPLRDVVSWNKMINGYSKS 127

Query: 265 GDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCL 324
            DM  A+  FN MP ++ VSW ++++GY +NG   K++E+F  M    I  +  TF+  L
Sbjct: 128 NDMFKANSFFNMMPVRDVVSWNSMLSGYLQNGESLKSIEVFVDMGREGIEFDGRTFAIIL 187

Query: 325 CACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENS 384
             C+ +     G Q+HG ++R    ++ +  S+L+DMY+K     +  +VF     K NS
Sbjct: 188 KVCSFLEDTSLGMQIHGIVVRVGCDTDVVAASALLDMYAKGKRFVESLRVFQGIPEK-NS 246

Query: 385 MLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACT 430
           + W+ +I+   Q+     A++ F +M + +    +   A +L +C 
Sbjct: 247 VSWSAIIAGCVQNNLLSLALKFFKEMQKVNAGVSQSIYASVLRSCA 292



 Score = 68.6 bits (166), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 48/177 (27%), Positives = 92/177 (51%), Gaps = 11/177 (6%)

Query: 10  INRKNLPNNCLIQSFLSLISKGQLSEAISSLDLLAQR----GIRLPAETLAFILQQCAES 65
           ++ K L   C+  S+ S+IS   + E      +L  R    GI     T A +L  CA  
Sbjct: 559 MHNKRLQEMCV--SWNSIISGYVMKEQSEDAQMLFTRMMEMGITPDKFTYATVLDTCANL 616

Query: 66  KSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNM 125
            S  LGK++H  + + +      ++ + L+ MY KCG   D+R +F+K   ++  ++N M
Sbjct: 617 ASAGLGKQIHAQV-IKKELQSDVYICSTLVDMYSKCGDLHDSRLMFEKSLRRDFVTWNAM 675

Query: 126 LSGYANLGMMKHARNLFDNMAERDV----VSWNTMIIGYAKSGAVEEGLKFYKVLRR 178
           + GYA+ G  + A  LF+ M   ++    V++ +++   A  G +++GL+++ +++R
Sbjct: 676 ICGYAHHGKGEEAIQLFERMILENIKPNHVTFISILRACAHMGLIDKGLEYFYMMKR 732


>gi|10092182|gb|AAG12601.1|AC068900_7 hypothetical protein; 7123-4412 [Arabidopsis thaliana]
          Length = 861

 Score =  295 bits (756), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 166/553 (30%), Positives = 284/553 (51%), Gaps = 46/553 (8%)

Query: 43  LAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCG 102
           L   G+     +L+ + + CA  K L  G +++  L +    +    ++N  I MY KC 
Sbjct: 331 LMSSGLGFDEISLSGVFRACALVKGLSEGLQIY-GLAIKSSLSLDVCVANAAIDMYGKCQ 389

Query: 103 SDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAK 162
           +  +A +VFD+                               M  RD VSWN +I  + +
Sbjct: 390 ALAEAFRVFDE-------------------------------MRRRDAVSWNAIIAAHEQ 418

Query: 163 SGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVI 222
           +G   E L  +  + R  I  +EF+F  IL  C     L    ++H  ++ +G  SN  +
Sbjct: 419 NGKGYETLFLFVSMLRSRIEPDEFTFGSILKACTG-GSLGYGMEIHSSIVKSGMASNSSV 477

Query: 223 SSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNP 282
             S++D Y+KCG + +A ++      R  ++           G ME   K+ N+  ++  
Sbjct: 478 GCSLIDMYSKCGMIEEAEKIHSRFFQRANVS-----------GTMEELEKMHNKRLQEMC 526

Query: 283 VSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGF 342
           VSW ++I+GY      + A  LFTRMM + I P++ T+++ L  CA++ S   GKQ+H  
Sbjct: 527 VSWNSIISGYVMKEQSEDAQMLFTRMMEMGITPDKFTYATVLDTCANLASAGLGKQIHAQ 586

Query: 343 LIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQ 402
           +I+   +S+  + S+L+DMYSKCG L+D R +F+    + + + WN MI     HG  E+
Sbjct: 587 VIKKELQSDVYICSTLVDMYSKCGDLHDSRLMFE-KSLRRDFVTWNAMICGYAHHGKGEE 645

Query: 403 AIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLI 462
           AI+LF  M+  ++KP+ +T   IL AC H GL+ +GL YF  M  D G+ P   H++ ++
Sbjct: 646 AIQLFERMILENIKPNHVTFISILRACAHMGLIDKGLEYFYMMKRDYGLDPQLPHYSNMV 705

Query: 463 ELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIH-GNIDMGRKVVDQLIDQNPQSS 521
           ++L ++G   + +  + +MP+E D  +W  L GVC IH  N+++  +    L+  +PQ S
Sbjct: 706 DILGKSGKVKRALELIREMPFEADDVIWRTLLGVCTIHRNNVEVAEEATAALLRLDPQDS 765

Query: 522 ATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRD 581
           + + LLS++Y+  G    V  +R+ +   + KKE   SW+E+++++H F V D  HP  +
Sbjct: 766 SAYTLLSNVYADAGMWEKVSDLRRNMRGFKLKKEPGCSWVELKDELHVFLVGDKAHPRWE 825

Query: 582 VLYSVLEQLAGQM 594
            +Y  L  +  +M
Sbjct: 826 EIYEELGLIYSEM 838



 Score =  198 bits (504), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 114/382 (29%), Positives = 209/382 (54%), Gaps = 33/382 (8%)

Query: 61  QCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLF 120
           +CA+  +L+LGK+ H H+ ++  + PTTF+ N L+ +Y      V A  VFDK+P++++ 
Sbjct: 15  ECAKQGALELGKQAHAHMIISGFR-PTTFVLNCLLQVYTNSRDFVSASMVFDKMPLRDVV 73

Query: 121 SYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFS 180
           S+N M++GY+    M  A + F+ M  RDVVSWN+M+ GY ++G   + ++ +  + R  
Sbjct: 74  SWNKMINGYSKSNDMFKANSFFNMMPVRDVVSWNSMLSGYLQNGESLKSIEVFVDMGREG 133

Query: 181 ISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDAR 240
           I  +  +FA IL +C  LE+  L  Q+HG V+  G  ++VV +S+++D YAK     ++ 
Sbjct: 134 IEFDGRTFAIILKVCSFLEDTSLGMQIHGIVVRVGCDTDVVAASALLDMYAKGKRFVESL 193

Query: 241 RLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQK 300
           R+F     ++ ++W+ ++                               AG  +N L   
Sbjct: 194 RVFQGIPEKNSVSWSAII-------------------------------AGCVQNNLLSL 222

Query: 301 ALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLID 360
           AL+ F  M  +    +Q  ++S L +CA++  L+ G Q+H   ++++F ++ IV ++ +D
Sbjct: 223 ALKFFKEMQKVNAGVSQSIYASVLRSCAALSELRLGGQLHAHALKSDFAADGIVRTATLD 282

Query: 361 MYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKI 420
           MY+KC  + D + +FD ++N  N   +N MI+  +Q  +  +A+ LFH ++ S +  D+I
Sbjct: 283 MYAKCDNMQDAQILFDNSENL-NRQSYNAMITGYSQEEHGFKALLLFHRLMSSGLGFDEI 341

Query: 421 TLAVILNACTHSGLVQEGLTYF 442
           +L+ +  AC     + EGL  +
Sbjct: 342 SLSGVFRACALVKGLSEGLQIY 363



 Score =  156 bits (394), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 113/441 (25%), Positives = 202/441 (45%), Gaps = 69/441 (15%)

Query: 32  QLSEAISSLDL---LAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTT 88
           Q  E++ S+++   + + GI     T A IL+ C+  +   LG ++H  +      T   
Sbjct: 115 QNGESLKSIEVFVDMGREGIEFDGRTFAIILKVCSFLEDTSLGMQIHGIVVRVGCDTDVV 174

Query: 89  FLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAER 148
             ++ L+ MY K    V++ +VF  IP                               E+
Sbjct: 175 -AASALLDMYAKGKRFVESLRVFQGIP-------------------------------EK 202

Query: 149 DVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVH 208
           + VSW+ +I G  ++  +   LKF+K +++ +   ++  +A +L  C  L EL+L  Q+H
Sbjct: 203 NSVSWSAIIAGCVQNNLLSLALKFFKEMQKVNAGVSQSIYASVLRSCAALSELRLGGQLH 262

Query: 209 GQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDME 268
              L + F ++ ++ ++ +D YAKC                                +M+
Sbjct: 263 AHALKSDFAADGIVRTATLDMYAKCD-------------------------------NMQ 291

Query: 269 SASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACA 328
            A  LF+     N  S+  +I GY++   G KAL LF R+M   +  ++ + S    ACA
Sbjct: 292 DAQILFDNSENLNRQSYNAMITGYSQEEHGFKALLLFHRLMSSGLGFDEISLSGVFRACA 351

Query: 329 SIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWN 388
            +  L  G Q++G  I+++   +  V ++ IDMY KC  L +  +VFD    + +++ WN
Sbjct: 352 LVKGLSEGLQIYGLAIKSSLSLDVCVANAAIDMYGKCQALAEAFRVFDEM-RRRDAVSWN 410

Query: 389 TMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHD 448
            +I+A  Q+G   + + LF  M+RS ++PD+ T   IL ACT  G +  G+    S+   
Sbjct: 411 AIIAAHEQNGKGYETLFLFVSMLRSRIEPDEFTFGSILKACT-GGSLGYGMEIHSSIVKS 469

Query: 449 LGIIPNQEHHACLIELLAQAG 469
            G+  N      LI++ ++ G
Sbjct: 470 -GMASNSSVGCSLIDMYSKCG 489



 Score =  146 bits (368), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 131/520 (25%), Positives = 213/520 (40%), Gaps = 115/520 (22%)

Query: 56  AFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIP 115
           A +L+ CA    L+LG ++H H  L         +    + MY KC +            
Sbjct: 243 ASVLRSCAALSELRLGGQLHAH-ALKSDFAADGIVRTATLDMYAKCDN------------ 289

Query: 116 VKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKV 175
                              M+ A+ LFDN    +  S+N MI GY++     + L  +  
Sbjct: 290 -------------------MQDAQILFDNSENLNRQSYNAMITGYSQEEHGFKALLLFHR 330

Query: 176 LRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGE 235
           L    +  +E S +G+   C  ++ L    Q++G  + +    +V ++++ +D Y KC  
Sbjct: 331 LMSSGLGFDEISLSGVFRACALVKGLSEGLQIYGLAIKSSLSLDVCVANAAIDMYGKCQA 390

Query: 236 LSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRN 295
           L++A R+FDE   RD +                               SW  +IA + +N
Sbjct: 391 LAEAFRVFDEMRRRDAV-------------------------------SWNAIIAAHEQN 419

Query: 296 GLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVM 355
           G G + L LF  M+  RI P++ TF S L AC    SL +G ++H  ++++   SN+ V 
Sbjct: 420 GKGYETLFLFVSMLRSRIEPDEFTFGSILKACTG-GSLGYGMEIHSSIVKSGMASNSSVG 478

Query: 356 SSLIDMYSKCGCLNDGRQV----------------FDLTDNK---ENSMLWNTMISALTQ 396
            SLIDMYSKCG + +  ++                 +   NK   E  + WN++IS    
Sbjct: 479 CSLIDMYSKCGMIEEAEKIHSRFFQRANVSGTMEELEKMHNKRLQEMCVSWNSIISGYVM 538

Query: 397 HGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQE 456
               E A  LF  M+   + PDK T A +L+ C +  L   GL               ++
Sbjct: 539 KEQSEDAQMLFTRMMEMGITPDKFTYATVLDTCAN--LASAGL--------------GKQ 582

Query: 457 HHACLI--ELLAQAGCSDQLMNQLEKMPYEHDSYL------------WNALHGVCRIHGN 502
            HA +I  EL +       L++   K    HDS L            WNA+      HG 
Sbjct: 583 IHAQVIKKELQSDVYICSTLVDMYSKCGDLHDSRLMFEKSLRRDFVTWNAMICGYAHHGK 642

Query: 503 IDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEK 542
            +   ++ +++I +N + +  H    SI  A     L++K
Sbjct: 643 GEEAIQLFERMILENIKPN--HVTFISILRACAHMGLIDK 680



 Score = 68.9 bits (167), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 48/177 (27%), Positives = 92/177 (51%), Gaps = 11/177 (6%)

Query: 10  INRKNLPNNCLIQSFLSLISKGQLSEAISSLDLLAQR----GIRLPAETLAFILQQCAES 65
           ++ K L   C+  S+ S+IS   + E      +L  R    GI     T A +L  CA  
Sbjct: 517 MHNKRLQEMCV--SWNSIISGYVMKEQSEDAQMLFTRMMEMGITPDKFTYATVLDTCANL 574

Query: 66  KSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNM 125
            S  LGK++H  + + +      ++ + L+ MY KCG   D+R +F+K   ++  ++N M
Sbjct: 575 ASAGLGKQIHAQV-IKKELQSDVYICSTLVDMYSKCGDLHDSRLMFEKSLRRDFVTWNAM 633

Query: 126 LSGYANLGMMKHARNLFDNMAERDV----VSWNTMIIGYAKSGAVEEGLKFYKVLRR 178
           + GYA+ G  + A  LF+ M   ++    V++ +++   A  G +++GL+++ +++R
Sbjct: 634 ICGYAHHGKGEEAIQLFERMILENIKPNHVTFISILRACAHMGLIDKGLEYFYMMKR 690


>gi|357498595|ref|XP_003619586.1| hypothetical protein MTR_6g059820 [Medicago truncatula]
 gi|355494601|gb|AES75804.1| hypothetical protein MTR_6g059820 [Medicago truncatula]
          Length = 528

 Score =  295 bits (756), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 160/479 (33%), Positives = 264/479 (55%), Gaps = 19/479 (3%)

Query: 131 NLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAG 190
           NL  + +A  +F+++   ++  +  +I  +  S       K +K +   +I  N F +  
Sbjct: 51  NLSNLHYAHQIFNHIHSPNIYLFTAIITAF--SSQQHTTFKLFKTMLNSNIRPNNFIYPH 108

Query: 191 ILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKC-GELSDARRLFDETDAR 249
           +L     ++E  L   VH Q++  GFL+  V+ +S+VD+Y+K  G L DA ++FDE   R
Sbjct: 109 VLK---SVKERFLVDLVHAQIVKCGFLNYPVVETSLVDSYSKVLGGLRDAHKVFDEMSER 165

Query: 250 DVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMM 309
           +++ +T +VSGY ++GD+E    +F+EM +++  +W  +I+G T+NG   + + LF  M+
Sbjct: 166 NIVVFTVLVSGYLRVGDVEKGLMVFDEMVDRDVPAWNAVISGCTQNGFFSEGIRLFREMV 225

Query: 310 ILRI----------RPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLI 359
                         +PNQ T    L AC     L+ GK +HG++ R  F  ++ V ++L+
Sbjct: 226 FAAGLGEGGFCKGNKPNQVTVVCVLSACGHGGMLQLGKWIHGYVYRHGFVVDSFVSNALV 285

Query: 360 DMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVR--SSVKP 417
           DMY KCG L   R+VF++ D ++    WN+MI+    HG  E AI  F  MV     V+P
Sbjct: 286 DMYGKCGSLELARKVFEM-DQRKGLTSWNSMINCYALHGKCEDAITFFEKMVECGGGVRP 344

Query: 418 DKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQ 477
           D++T   +LNACTH GLV++G  YFE M  + GI P   H+ CLI+LL +AG  D+ M+ 
Sbjct: 345 DEVTFIGLLNACTHGGLVEQGCGYFEMMIKEYGIEPQIAHYGCLIDLLGRAGQFDEAMDV 404

Query: 478 LEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKG 537
           ++ M  E D  +W +L   C++HG  D+      +L++ +P +     +L++IY  LGK 
Sbjct: 405 VKGMSMEPDEVVWGSLLNGCKVHGRTDLAEFAAKKLVEIDPHNGGYGTMLANIYGQLGKW 464

Query: 538 RLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQMGE 596
             +  V   + +++  K    SWIE+++KVH F   D  +P  + LY++LE L G   E
Sbjct: 465 DEMRNVWSKLKQQKSYKIPGCSWIEVDDKVHQFFSLDQSNPKTEELYNILESLFGNGSE 523



 Score =  115 bits (287), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 77/310 (24%), Positives = 140/310 (45%), Gaps = 42/310 (13%)

Query: 106 DARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGA 165
           DA KVFD++  +N+  +  ++SGY  +G ++    +FD M +RDV +WN +I G  ++G 
Sbjct: 154 DAHKVFDEMSERNIVVFTVLVSGYLRVGDVEKGLMVFDEMVDRDVPAWNAVISGCTQNGF 213

Query: 166 VEEGLKFYKVLRRFSISCNEFSFAG-----------ILTICVKLEELKLTRQVHGQVLVT 214
             EG++ ++ +  F+    E  F             +L+ C     L+L + +HG V   
Sbjct: 214 FSEGIRLFREM-VFAAGLGEGGFCKGNKPNQVTVVCVLSACGHGGMLQLGKWIHGYVYRH 272

Query: 215 GFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLF 274
           GF+ +  +S+++VD Y KCG L  AR++F+    + + +W +M++ YA  G  E A   F
Sbjct: 273 GFVVDSFVSNALVDMYGKCGSLELARKVFEMDQRKGLTSWNSMINCYALHGKCEDAITFF 332

Query: 275 NEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLK 334
            +M E                G G              +RP++ TF   L AC     ++
Sbjct: 333 EKMVE---------------CGGG--------------VRPDEVTFIGLLNACTHGGLVE 363

Query: 335 HGKQVHGFLIRT-NFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISA 393
            G      +I+             LID+  + G  ++   V      + + ++W ++++ 
Sbjct: 364 QGCGYFEMMIKEYGIEPQIAHYGCLIDLLGRAGQFDEAMDVVKGMSMEPDEVVWGSLLNG 423

Query: 394 LTQHGYDEQA 403
              HG  + A
Sbjct: 424 CKVHGRTDLA 433



 Score = 62.8 bits (151), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 41/129 (31%), Positives = 67/129 (51%), Gaps = 7/129 (5%)

Query: 54  TLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDK 113
           T+  +L  C     L+LGK +H ++         +F+SN L+ MY KCGS   ARKVF+ 
Sbjct: 245 TVVCVLSACGHGGMLQLGKWIHGYV-YRHGFVVDSFVSNALVDMYGKCGSLELARKVFEM 303

Query: 114 IPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAE------RDVVSWNTMIIGYAKSGAVE 167
              K L S+N+M++ YA  G  + A   F+ M E       D V++  ++      G VE
Sbjct: 304 DQRKGLTSWNSMINCYALHGKCEDAITFFEKMVECGGGVRPDEVTFIGLLNACTHGGLVE 363

Query: 168 EGLKFYKVL 176
           +G  +++++
Sbjct: 364 QGCGYFEMM 372


>gi|242073754|ref|XP_002446813.1| hypothetical protein SORBIDRAFT_06g023080 [Sorghum bicolor]
 gi|241937996|gb|EES11141.1| hypothetical protein SORBIDRAFT_06g023080 [Sorghum bicolor]
          Length = 547

 Score =  295 bits (756), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 159/547 (29%), Positives = 289/547 (52%), Gaps = 28/547 (5%)

Query: 59  LQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKN 118
           L+ CA  + L     + + L L+Q    +++++  ++ +    G    A +VF  +P  N
Sbjct: 17  LRACATFRDLLRAHGLAVRLCLSQ----SSYVATQIVHVCNGHGRAAHAARVFAHVPAPN 72

Query: 119 LFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRR 178
           L  +N M+  YA             N   RD V     ++      +   G         
Sbjct: 73  LHLHNAMIKAYAQ------------NHLHRDAVEVYVRMLRCLPDPSSSGG--------- 111

Query: 179 FSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSD 238
           FS+  + F++  +L  C  L   +L RQVH  V  +G  S+ ++ +S+++ Y +CG+LS 
Sbjct: 112 FSVG-DRFTYPFLLKACGGLAASQLGRQVHAHVARSGCESHAIVQNSLIEMYTRCGDLSL 170

Query: 239 ARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLG 298
           AR++FD    +D ++W T++S +A++G M  A +LF+ MP+K  VSWT L++GYT  G  
Sbjct: 171 ARKVFDGMREKDAVSWNTLISAHARMGQMRKARELFHSMPDKTVVSWTALVSGYTAVGDF 230

Query: 299 QKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSL 358
             A+E+F +M +    P+  +  + L ACA + +L+ G+ ++ +  +        + ++L
Sbjct: 231 AGAVEVFRQMQMEGFEPDDVSIVAVLPACAQLGALELGRWIYAYCNKHGMLGKIYICNAL 290

Query: 359 IDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSS-VKP 417
           ++MY+KCGC+ +  Q+F     K + + W+T I  L  HG   +A++LF  M R   V P
Sbjct: 291 MEMYAKCGCIEEALQLFHGMSEK-DVISWSTAIGGLAAHGRAREAVKLFEVMDREGRVMP 349

Query: 418 DKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQ 477
           + IT   +L+AC+H+GL+ EGL YF+ M  + G+ P+ EH+ C+++LL ++G   + ++ 
Sbjct: 350 NGITFVGLLSACSHAGLLDEGLRYFDRMKEEYGVEPSVEHYGCVVDLLGRSGRIQRALDT 409

Query: 478 LEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKG 537
           +  MP   D  +W +L   CR H ++D      ++L++  P+      +L+++Y+A G+ 
Sbjct: 410 IGGMPIPPDGKIWGSLLSACRSHSDVDTAVVAAERLVELEPEDVGNLVMLANVYAAAGRW 469

Query: 538 RLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQMGED 597
             V   R+ I  R  +K    S IE++N V  F   + L P    + ++++ LA Q+ +D
Sbjct: 470 GNVASTRKEIRSRSTRKTPGCSMIEVDNVVREFVAGEDLGPELGGIAAIIDILASQLADD 529

Query: 598 APSLDAD 604
              +D+D
Sbjct: 530 EELVDSD 536



 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 79/260 (30%), Positives = 139/260 (53%), Gaps = 6/260 (2%)

Query: 54  TLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDK 113
           T  F+L+ C    + +LG++VH H+  +  ++    + N LI MY +CG    ARKVFD 
Sbjct: 119 TYPFLLKACGGLAASQLGRQVHAHVARSGCES-HAIVQNSLIEMYTRCGDLSLARKVFDG 177

Query: 114 IPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFY 173
           +  K+  S+N ++S +A +G M+ AR LF +M ++ VVSW  ++ GY   G     ++ +
Sbjct: 178 MREKDAVSWNTLISAHARMGQMRKARELFHSMPDKTVVSWTALVSGYTAVGDFAGAVEVF 237

Query: 174 KVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKC 233
           + ++      ++ S   +L  C +L  L+L R ++      G L  + I +++++ YAKC
Sbjct: 238 RQMQMEGFEPDDVSIVAVLPACAQLGALELGRWIYAYCNKHGMLGKIYICNALMEMYAKC 297

Query: 234 GELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEK-----NPVSWTTL 288
           G + +A +LF     +DV++W+T + G A  G    A KLF  M  +     N +++  L
Sbjct: 298 GCIEEALQLFHGMSEKDVISWSTAIGGLAAHGRAREAVKLFEVMDREGRVMPNGITFVGL 357

Query: 289 IAGYTRNGLGQKALELFTRM 308
           ++  +  GL  + L  F RM
Sbjct: 358 LSACSHAGLLDEGLRYFDRM 377



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/173 (21%), Positives = 83/173 (47%), Gaps = 11/173 (6%)

Query: 14  NLPNNCLIQSFLSLISK----GQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLK 69
           ++P+  ++ S+ +L+S     G  + A+     +   G      ++  +L  CA+  +L+
Sbjct: 208 SMPDKTVV-SWTALVSGYTAVGDFAGAVEVFRQMQMEGFEPDDVSIVAVLPACAQLGALE 266

Query: 70  LGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGY 129
           LG+ ++ +           ++ N L+ MY KCG   +A ++F  +  K++ S++  + G 
Sbjct: 267 LGRWIYAYCN-KHGMLGKIYICNALMEMYAKCGCIEEALQLFHGMSEKDVISWSTAIGGL 325

Query: 130 ANLGMMKHARNLFDNMAERDVVSWN-----TMIIGYAKSGAVEEGLKFYKVLR 177
           A  G  + A  LF+ M     V  N      ++   + +G ++EGL+++  ++
Sbjct: 326 AAHGRAREAVKLFEVMDREGRVMPNGITFVGLLSACSHAGLLDEGLRYFDRMK 378


>gi|357507065|ref|XP_003623821.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355498836|gb|AES80039.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 837

 Score =  295 bits (756), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 149/479 (31%), Positives = 270/479 (56%), Gaps = 34/479 (7%)

Query: 118 NLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLR 177
           N++  + ++  YA  G +K+A+N+ + M + DVVSWN++++G+ + G  EE L+ +K + 
Sbjct: 299 NVYVQSALVDMYAKCGDLKNAKNMLETMEDDDVVSWNSLMVGFVRHGLEEEALRLFKNMH 358

Query: 178 RFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELS 237
             ++  ++++F  +L  CV +  +   + VHG ++ TGF +  ++S+++VD YAK     
Sbjct: 359 GRNMKIDDYTFPSVLNCCV-VGSIN-PKSVHGLIIKTGFENYKLVSNALVDMYAK----- 411

Query: 238 DARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGL 297
                                      GDM+ A  +F +M EK+ +SWT+L+ GY +N  
Sbjct: 412 --------------------------TGDMDCAYTVFEKMLEKDVISWTSLVTGYAQNNS 445

Query: 298 GQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSS 357
            +++L++F  M +  + P+Q   +S L ACA +  L+ GKQVH   I++  R +  V +S
Sbjct: 446 HEESLKIFCDMRVTGVNPDQFIVASILSACAELTLLEFGKQVHLDFIKSGLRWSQSVYNS 505

Query: 358 LIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKP 417
           L+ MY+KCGCL+D   +F ++   ++ + W  +I    Q+G    +++ +  MV S  +P
Sbjct: 506 LVAMYAKCGCLDDADAIF-VSMQVKDVITWTAIIVGYAQNGKGRNSLKFYDAMVSSGTRP 564

Query: 418 DKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQ 477
           D IT   +L AC+H+GLV EG  YF+ M    GI P  EH+AC+I+L  ++G  D+    
Sbjct: 565 DFITFIGLLFACSHAGLVDEGRKYFQQMNKVYGIKPGPEHYACMIDLFGRSGKLDEAKQL 624

Query: 478 LEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKG 537
           L++M  + D+ +W +L   CR+H N+++  +    L +  P ++  + +LS++YSA  K 
Sbjct: 625 LDQMDVKPDATVWKSLLSACRVHENLELAERAATNLFELEPMNAMPYVMLSNMYSASRKW 684

Query: 538 RLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQMGE 596
             V K+R+L+  +   KE   SW+EI ++V+ F   D  HP    +Y+ ++++  ++ E
Sbjct: 685 NDVAKIRKLMKSKGIVKEPGCSWLEINSRVNTFISDDRGHPREAEIYTKIDEIILRIKE 743



 Score =  215 bits (547), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 135/451 (29%), Positives = 230/451 (50%), Gaps = 52/451 (11%)

Query: 49  RLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDAR 108
           +  ++ L+F    C   K +   + +H     T     + + +N L++   K G   DAR
Sbjct: 32  KFSSKVLSFPHNPC---KFMAFLRSIH---TTTAASYESIYQTNQLLNQLSKSGQVNDAR 85

Query: 109 KVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEE 168
           K+FDK+P K+ +S+N M+S Y N+G +  AR LFD  + +  ++W+++I GY K G   E
Sbjct: 86  KLFDKMPQKDEYSWNTMISSYVNVGRLVEARELFDGCSCKSSITWSSIISGYCKFGCKVE 145

Query: 169 GLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVD 228
               ++ +R      ++F+   +L +C  L  ++    +HG V+  GF  NV + + +VD
Sbjct: 146 AFDLFRSMRLEGWKASQFTLGSVLRVCSSLGLIQTGEMIHGFVVKNGFEGNVFVVTGLVD 205

Query: 229 AYAKCGELSDARRLFD--ETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWT 286
            YAKC  +S+A  LF   E D ++ + WT MV+GYA+ GD                    
Sbjct: 206 MYAKCKCVSEAEFLFKGLEFDRKNHVLWTAMVTGYAQNGD-------------------- 245

Query: 287 TLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRT 346
                      G KA+E F  M    +  NQ+TF + L AC+S+++   G+QVHGF++++
Sbjct: 246 -----------GYKAVEFFRYMHAQGVECNQYTFPTILTACSSVLARCFGEQVHGFIVKS 294

Query: 347 NFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRL 406
            F SN  V S+L+DMY+KCG L + + + +  ++ ++ + WN+++    +HG +E+A+RL
Sbjct: 295 GFGSNVYVQSALVDMYAKCGDLKNAKNMLETMED-DDVVSWNSLMVGFVRHGLEEEALRL 353

Query: 407 FHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHA----CLI 462
           F +M   ++K D  T   +LN C    +  + +       H L I    E++      L+
Sbjct: 354 FKNMHGRNMKIDDYTFPSVLNCCVVGSINPKSV-------HGLIIKTGFENYKLVSNALV 406

Query: 463 ELLAQAGCSDQLMNQLEKMPYEHDSYLWNAL 493
           ++ A+ G  D      EKM  E D   W +L
Sbjct: 407 DMYAKTGDMDCAYTVFEKM-LEKDVISWTSL 436


>gi|225457427|ref|XP_002282084.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g74630-like [Vitis vinifera]
          Length = 643

 Score =  295 bits (756), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 155/488 (31%), Positives = 265/488 (54%), Gaps = 32/488 (6%)

Query: 135 MKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGL-KFYKVLRRFSISCNEFSFAGILT 193
           + +AR LF +    DV   NT+I G A+S   +  L  F ++ RR +   + FSFA +L 
Sbjct: 55  LDYARRLFLHFPNPDVFMHNTLIRGLAESDTPQNSLITFVEMRRRLTAPLDSFSFAFLLK 114

Query: 194 ICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDET------- 246
                  L+   Q+H Q +V G  +++ + +++V  Y++CG ++ A+++F+E        
Sbjct: 115 AAASYRSLESGIQLHCQAIVHGLDTHLFVGTTLVSMYSECGFVAFAKKVFEEMFEPNVVA 174

Query: 247 ------------------------DARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNP 282
                                     R++ +W  M++GY K G++E A KLF EMP K+ 
Sbjct: 175 WNAVVTACFRCGDVKGADMMFNRMPFRNLTSWNVMLAGYTKAGELELARKLFLEMPVKDD 234

Query: 283 VSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGF 342
           VSW+T+I G+  NG   +A   F  +  + +RPN+ + +  L ACA   +++ GK +HGF
Sbjct: 235 VSWSTMIVGFAHNGFFYEAFGFFRELQQVGMRPNEVSLTGALSACADAGAIEFGKILHGF 294

Query: 343 LIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQ 402
           + ++ F     V ++L+D YSKCG +   R VF+    K + + W +MI+ L  HGY E+
Sbjct: 295 IEKSGFLWMVSVNNALLDTYSKCGNVGMARLVFERMPEKRSIVSWTSMIAGLAMHGYGEE 354

Query: 403 AIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLI 462
           AI+LFH+M  S ++PD I    IL AC+H+GL+++G  YF  M     I P  EH+ C++
Sbjct: 355 AIQLFHEMEESGIRPDGIAFISILYACSHAGLIEKGYEYFYKMKDIYNIEPAIEHYGCMV 414

Query: 463 ELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSA 522
           +L  +AG  D+    +  MP    + +W  L G C IHGN+ +  +V ++L + +P +S 
Sbjct: 415 DLYGRAGQLDKAYEFIIHMPVLPTAIIWRTLLGACSIHGNVKLAERVKERLSELDPNNSG 474

Query: 523 THGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDV 582
            H LLS+IY+  GK + V  VR+ + +++  K    S IE++  +++F   +  + + + 
Sbjct: 475 DHVLLSNIYAVAGKWKDVAAVRRSMTDQRMNKTPGWSMIEVDKIMYSFVAGEVQNSITEE 534

Query: 583 LYSVLEQL 590
            Y  L+++
Sbjct: 535 AYEKLKEI 542



 Score =  156 bits (394), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 112/436 (25%), Positives = 204/436 (46%), Gaps = 89/436 (20%)

Query: 8   RGINRKNLPNNCLIQSFLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKS 67
           RG+   + P N LI +F+ +  + +L+  + S              + AF+L+  A  +S
Sbjct: 78  RGLAESDTPQNSLI-TFVEM--RRRLTAPLDSF-------------SFAFLLKAAASYRS 121

Query: 68  LKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFD--------------- 112
           L+ G ++H    +    T   F+   L+SMY +CG    A+KVF+               
Sbjct: 122 LESGIQLHCQAIVHGLDT-HLFVGTTLVSMYSECGFVAFAKKVFEEMFEPNVVAWNAVVT 180

Query: 113 ----------------KIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTM 156
                           ++P +NL S+N ML+GY   G ++ AR LF  M  +D VSW+TM
Sbjct: 181 ACFRCGDVKGADMMFNRMPFRNLTSWNVMLAGYTKAGELELARKLFLEMPVKDDVSWSTM 240

Query: 157 IIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGF 216
           I+G+A +G   E   F++ L++  +  NE S  G L+ C     ++  + +HG +  +GF
Sbjct: 241 IVGFAHNGFFYEAFGFFRELQQVGMRPNEVSLTGALSACADAGAIEFGKILHGFIEKSGF 300

Query: 217 LSNVVISSSIVDAYAKCGELSDARRLFDE-TDARDVLTWTTMVSGYAKLGDMESASKLFN 275
           L  V ++++++D Y+KCG +  AR +F+   + R +++WT+M++G A  G  E A +LF+
Sbjct: 301 LWMVSVNNALLDTYSKCGNVGMARLVFERMPEKRSIVSWTSMIAGLAMHGYGEEAIQLFH 360

Query: 276 EMPEK----NPVSWTTLIAGYTRNGLGQKALELFTRMM-ILRIRPNQHTFSSCLCACASI 330
           EM E     + +++ +++   +  GL +K  E F +M  I  I P               
Sbjct: 361 EMEESGIRPDGIAFISILYACSHAGLIEKGYEYFYKMKDIYNIEP--------------- 405

Query: 331 VSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTM 390
            +++H                      ++D+Y + G L+   +          +++W T+
Sbjct: 406 -AIEH-------------------YGCMVDLYGRAGQLDKAYEFIIHMPVLPTAIIWRTL 445

Query: 391 ISALTQHGYDEQAIRL 406
           + A + HG  + A R+
Sbjct: 446 LGACSIHGNVKLAERV 461



 Score = 73.2 bits (178), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 98/403 (24%), Positives = 163/403 (40%), Gaps = 88/403 (21%)

Query: 189 AGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDA 248
           + +LT C  L+ LK   QVH  V  TG  ++ +I+  ++        L  A  + D  D 
Sbjct: 9   SSLLTNCRSLKNLK---QVHAYVCKTGLDTDPIIAGKLL--------LHSAVSVPDALD- 56

Query: 249 RDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRM 308
                       YA+        +LF   P  +     TLI G   +   Q +L  F  M
Sbjct: 57  ------------YAR--------RLFLHFPNPDVFMHNTLIRGLAESDTPQNSLITFVEM 96

Query: 309 MILRIRP-NQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGC 367
                 P +  +F+  L A AS  SL+ G Q+H   I     ++  V ++L+ MYS+CG 
Sbjct: 97  RRRLTAPLDSFSFAFLLKAAASYRSLESGIQLHCQAIVHGLDTHLFVGTTLVSMYSECGF 156

Query: 368 LNDGRQVF---------------------------DLTDNK---ENSMLWNTMISALTQH 397
           +   ++VF                           D+  N+    N   WN M++  T+ 
Sbjct: 157 VAFAKKVFEEMFEPNVVAWNAVVTACFRCGDVKGADMMFNRMPFRNLTSWNVMLAGYTKA 216

Query: 398 GYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEH 457
           G  E A +LF +M    VK D ++ + ++    H+G   E   +F  +   +G+ PN+  
Sbjct: 217 GELELARKLFLEM---PVK-DDVSWSTMIVGFAHNGFFYEAFGFFREL-QQVGMRPNE-- 269

Query: 458 HACLIELL-AQAGCSDQLMNQLEKMPY---EHDSYLW-----NALHGVCRIHGNIDMGRK 508
               + L  A + C+D    +  K+ +   E   +LW     NAL       GN+ M R 
Sbjct: 270 ----VSLTGALSACADAGAIEFGKILHGFIEKSGFLWMVSVNNALLDTYSKCGNVGMARL 325

Query: 509 VVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQ 551
           V +++ ++    S T     S+ + L      E+  QL +E +
Sbjct: 326 VFERMPEKRSIVSWT-----SMIAGLAMHGYGEEAIQLFHEME 363



 Score = 48.1 bits (113), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 60/253 (23%), Positives = 109/253 (43%), Gaps = 27/253 (10%)

Query: 316 NQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLI--DMYSKCGCLNDGRQ 373
            QH  SS L  C S   LK+ KQVH ++ +T   ++ I+   L+     S    L+  R+
Sbjct: 4   TQHLCSSLLTNCRS---LKNLKQVHAYVCKTGLDTDPIIAGKLLLHSAVSVPDALDYARR 60

Query: 374 VFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKP-DKITLAVILNACTHS 432
           +F L     +  + NT+I  L +    + ++  F +M R    P D  + A +L A    
Sbjct: 61  LF-LHFPNPDVFMHNTLIRGLAESDTPQNSLITFVEMRRRLTAPLDSFSFAFLLKAAASY 119

Query: 433 GLVQEGLTYFESMTHDLGIIPNQEHH----ACLIELLAQAGCSDQLMNQLEKMPYEHDSY 488
             ++ G+       H   I+   + H      L+ + ++ G         E+M +E +  
Sbjct: 120 RSLESGIQ-----LHCQAIVHGLDTHLFVGTTLVSMYSECGFVAFAKKVFEEM-FEPNVV 173

Query: 489 LWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATH-GLLSSIYSALGKGRLVEKVRQLI 547
            WNA+   C   G++    K  D + ++ P  + T   ++ + Y+  G+   +E  R+L 
Sbjct: 174 AWNAVVTACFRCGDV----KGADMMFNRMPFRNLTSWNVMLAGYTKAGE---LELARKLF 226

Query: 548 NERQFKKEQAISW 560
            E   K +  +SW
Sbjct: 227 LEMPVKDD--VSW 237


>gi|326504712|dbj|BAK06647.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 658

 Score =  295 bits (755), Expect = 5e-77,   Method: Compositional matrix adjust.
 Identities = 150/470 (31%), Positives = 263/470 (55%), Gaps = 4/470 (0%)

Query: 80  LTQRKTPTTFL--SNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKH 137
           +T R+    FL  + +L+  Y        AR++F+++P KN  ++N ML+GY   GM+  
Sbjct: 169 VTVRRGLNGFLIVATNLVHAYAAASQVCFAREIFEQMPDKNTVTWNAMLNGYLKAGMLPM 228

Query: 138 ARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFY-KVLRRFSISCNEFSFAGILTICV 196
           A  +F  + ERD VSW T+I GY ++    E L+ Y  ++       N      ++ +C 
Sbjct: 229 AAEVFGRIPERDAVSWLTIIDGYIRADCTSEALRAYVAMMAEVDTRGNAALLVDLIKVCA 288

Query: 197 KLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTT 256
           +   +   +Q+H  +L  GF ++  + ++++  Y  C  L  AR  F  +D   + +W  
Sbjct: 289 RHAAVLEGQQLHTVILKDGFDAHPFVQATLIHFYGSCDLLDIARMQFKLSDKSHIASWNA 348

Query: 257 MVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPN 316
           ++SG      M  A +LF++MPE++ +SW+TL++GY ++G   KAL+LF  M+   + PN
Sbjct: 349 LMSGLLHRNLMHEARQLFDDMPERDTISWSTLLSGYVQSGHSNKALQLFYLMLGAGVEPN 408

Query: 317 QHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFD 376
             T +S L A A    L+ G+ +H ++I  + +    + + LIDMY+KCG + D  Q+F 
Sbjct: 409 DVTLASTLSAVADSGMLEQGRFIHDYIISNSIQLTDNLSAGLIDMYAKCGSVADAIQLFS 468

Query: 377 LTDNKENSM-LWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLV 435
              +K +S+  WN +I +L  HG+   ++ LF ++ R+++KP+ +T   +LNAC H+GLV
Sbjct: 469 HVKHKLSSVSPWNAIICSLAIHGHAHTSLELFLELQRTNIKPNSVTYIGVLNACCHAGLV 528

Query: 436 QEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHG 495
            EG  +FESM+ + GI P  +H+ C+++LL +AG  ++  N ++ MP   D  +W ++  
Sbjct: 529 TEGRHHFESMSREYGIQPTIKHYGCMVDLLGRAGHLEEAENLIQMMPMRSDVVIWGSILA 588

Query: 496 VCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQ 545
             R HGN+ +G K  ++L   +P   A+   LS+I++   +   V  VR+
Sbjct: 589 AARTHGNVALGEKAAEELAKIDPNHGASKVALSNIFAEAARWNNVSLVRK 638



 Score =  193 bits (491), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 132/518 (25%), Positives = 251/518 (48%), Gaps = 52/518 (10%)

Query: 57  FILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSD---VDARKVFDK 113
           F++        L+ G+++H     +      TF+ N L++ Y +  S      AR +FD+
Sbjct: 11  FLVSSLKSGARLRHGEQLHALAAKSGLLASNTFVRNSLLAFYARLPSPQAPALARHLFDE 70

Query: 114 IPV--KNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLK 171
           IP+  ++  ++N +L+  A  G +  A+ +   M +RD VS+ T++   A++G  E+ + 
Sbjct: 71  IPLALRDPAAHNTLLASLARAGRLDLAQGMLAEMPQRDTVSYTTVLTALARAGHAEDAVA 130

Query: 172 FYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQV-HGQVLVTGFLSNVVISSSIVDAY 230
            ++ +    +  NE + AG+LT  + LE   +   V HG  +  G    +++++++V AY
Sbjct: 131 VFRGMLAQDVPPNEVTLAGVLT-ALALERPPVPVGVAHGVTVRRGLNGFLIVATNLVHAY 189

Query: 231 AKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIA 290
           A   ++  AR +F++   ++ +TW  M++GY K G +  A+++F  +PE++ VSW T+I 
Sbjct: 190 AAASQVCFAREIFEQMPDKNTVTWNAMLNGYLKAGMLPMAAEVFGRIPERDAVSWLTIID 249

Query: 291 GYTRNGLGQKALELFTRMMI-LRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFR 349
           GY R     +AL  +  MM  +  R N       +  CA   ++  G+Q+H  +++  F 
Sbjct: 250 GYIRADCTSEALRAYVAMMAEVDTRGNAALLVDLIKVCARHAAVLEGQQLHTVILKDGFD 309

Query: 350 SNTIVMSSLIDMYSKCGCLNDGRQVFDLTDN----------------------------- 380
           ++  V ++LI  Y  C  L+  R  F L+D                              
Sbjct: 310 AHPFVQATLIHFYGSCDLLDIARMQFKLSDKSHIASWNALMSGLLHRNLMHEARQLFDDM 369

Query: 381 -KENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGL 439
            + +++ W+T++S   Q G+  +A++LF+ M+ + V+P+ +TLA  L+A   SG++++G 
Sbjct: 370 PERDTISWSTLLSGYVQSGHSNKALQLFYLMLGAGVEPNDVTLASTLSAVADSGMLEQG- 428

Query: 440 TYFESMTHDLGIIPNQEH-----HACLIELLAQAGCSDQLMNQLEKMPYEHDSY-LWNAL 493
                  HD  II N         A LI++ A+ G     +     + ++  S   WNA+
Sbjct: 429 ----RFIHDY-IISNSIQLTDNLSAGLIDMYAKCGSVADAIQLFSHVKHKLSSVSPWNAI 483

Query: 494 HGVCRIHGNIDMGRKVVDQLIDQN--PQSSATHGLLSS 529
                IHG+     ++  +L   N  P S    G+L++
Sbjct: 484 ICSLAIHGHAHTSLELFLELQRTNIKPNSVTYIGVLNA 521



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 86/367 (23%), Positives = 164/367 (44%), Gaps = 32/367 (8%)

Query: 34  SEAISS-LDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSN 92
           SEA+ + + ++A+   R  A  L  +++ CA   ++  G+++H  + L        F+  
Sbjct: 258 SEALRAYVAMMAEVDTRGNAALLVDLIKVCARHAAVLEGQQLHT-VILKDGFDAHPFVQA 316

Query: 93  HLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVS 152
            LI  Y  C     AR  F      ++ S+N ++SG  +  +M  AR LFD+M ERD +S
Sbjct: 317 TLIHFYGSCDLLDIARMQFKLSDKSHIASWNALMSGLLHRNLMHEARQLFDDMPERDTIS 376

Query: 153 WNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVL 212
           W+T++ GY +SG   + L+ + ++    +  N+ + A  L+       L+  R +H  ++
Sbjct: 377 WSTLLSGYVQSGHSNKALQLFYLMLGAGVEPNDVTLASTLSAVADSGMLEQGRFIHDYII 436

Query: 213 VTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASK 272
                    +S+ ++D YAKCG ++DA +LF                           S 
Sbjct: 437 SNSIQLTDNLSAGLIDMYAKCGSVADAIQLF---------------------------SH 469

Query: 273 LFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVS 332
           + +++   +P  W  +I     +G    +LELF  +    I+PN  T+   L AC     
Sbjct: 470 VKHKLSSVSP--WNAIICSLAIHGHAHTSLELFLELQRTNIKPNSVTYIGVLNACCHAGL 527

Query: 333 LKHGKQVHGFLIRTNFRSNTIV-MSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMI 391
           +  G+     + R      TI     ++D+  + G L +   +  +   + + ++W +++
Sbjct: 528 VTEGRHHFESMSREYGIQPTIKHYGCMVDLLGRAGHLEEAENLIQMMPMRSDVVIWGSIL 587

Query: 392 SALTQHG 398
           +A   HG
Sbjct: 588 AAARTHG 594


>gi|222617355|gb|EEE53487.1| hypothetical protein OsJ_36641 [Oryza sativa Japonica Group]
          Length = 921

 Score =  295 bits (755), Expect = 5e-77,   Method: Compositional matrix adjust.
 Identities = 151/476 (31%), Positives = 251/476 (52%), Gaps = 39/476 (8%)

Query: 116 VKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKV 175
           V++ F  N ++  Y+  G    AR +FD M ERDVVSWNT +    + G           
Sbjct: 467 VEDTFVGNALIDAYSKNGGFSDARKVFDEMPERDVVSWNTAMAAMVREG----------- 515

Query: 176 LRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGE 235
                        AG+  +  ++ E                  + V  ++I+D Y K GE
Sbjct: 516 -----------ELAGVRKLFDEMPE-----------------KDTVSWNTILDGYTKAGE 547

Query: 236 LSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRN 295
           +  A  LF     R+V++W+TMVSGY K GD+E A  +F++MP KN V+WT +++   + 
Sbjct: 548 VEAAFELFQRMPERNVVSWSTMVSGYCKKGDLEMARVIFDKMPSKNLVTWTIMVSACAQK 607

Query: 296 GLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVM 355
           GL  +A +LF +M    +  +     S L ACA   SL  GK++H ++ + N   +T V 
Sbjct: 608 GLVDEAGKLFAQMKEASVELDVAAVVSILAACAESGSLSLGKRIHRYVRKRNLGRSTHVC 667

Query: 356 SSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSV 415
           ++LIDM+ KCGC+N    VFD    +++S+ WN++I     HG+ ++A+ LF  M +   
Sbjct: 668 NALIDMFCKCGCVNRADYVFDTETVQKDSVSWNSIIGGFAMHGHGDKALELFAQMKQQGF 727

Query: 416 KPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLM 475
            PD +T+  +L+ACTH G V EG  +F +M  D GI+P  EH+ C+I+LL + G   + +
Sbjct: 728 NPDAVTMINVLSACTHMGFVDEGRRHFSNMERDYGIMPQIEHYGCMIDLLGRGGLIKEAV 787

Query: 476 NQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALG 535
           + ++ MP+E +  +W +L   CR+H N++     V++L    P ++  + +LS+IY+  G
Sbjct: 788 DLIKSMPWEPNEVIWGSLLSACRLHKNVEYAEIAVNELSKLQPSNAGNYAVLSNIYAEAG 847

Query: 536 KGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLA 591
           +   + K R  +     +K    SW+E+    H F+V D  H   D +  ++++L+
Sbjct: 848 QWSDMAKARMQMKGTGSQKTAGSSWVELNETFHEFTVGDRKHQDSDQISEMVDRLS 903



 Score =  115 bits (287), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 73/313 (23%), Positives = 144/313 (46%), Gaps = 43/313 (13%)

Query: 92  NHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVV 151
           N ++  Y K G    A ++F ++P +N+ S++ M+SGY   G ++ AR +FD M  +++V
Sbjct: 536 NTILDGYTKAGEVEAAFELFQRMPERNVVSWSTMVSGYCKKGDLEMARVIFDKMPSKNLV 595

Query: 152 SWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQV 211
           +W  M+   A+ G V+E  K +  ++  S+  +  +   IL  C +   L L +++H  V
Sbjct: 596 TWTIMVSACAQKGLVDEAGKLFAQMKEASVELDVAAVVSILAACAESGSLSLGKRIHRYV 655

Query: 212 LVTGFLSNVVISSSIVDAYAKCGELSDARRLFD-ETDARDVLTWTTMVSGYAKLGDMESA 270
                  +  + ++++D + KCG ++ A  +FD ET  +D ++W +++ G+A        
Sbjct: 656 RKRNLGRSTHVCNALIDMFCKCGCVNRADYVFDTETVQKDSVSWNSIIGGFAM------- 708

Query: 271 SKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASI 330
                                   +G G KALELF +M      P+  T  + L AC  +
Sbjct: 709 ------------------------HGHGDKALELFAQMKQQGFNPDAVTMINVLSACTHM 744

Query: 331 VSLKHGKQVHGFLIRTNFRSNTIVMSS------LIDMYSKCGCLNDGRQVFDLTDNKENS 384
             +  G++       +N   +  +M        +ID+  + G + +   +      + N 
Sbjct: 745 GFVDEGRRHF-----SNMERDYGIMPQIEHYGCMIDLLGRGGLIKEAVDLIKSMPWEPNE 799

Query: 385 MLWNTMISALTQH 397
           ++W +++SA   H
Sbjct: 800 VIWGSLLSACRLH 812



 Score = 65.5 bits (158), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 48/154 (31%), Positives = 76/154 (49%), Gaps = 6/154 (3%)

Query: 30  KGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTF 89
           KG + EA      + +  + L    +  IL  CAES SL LGKR+H +++  +    +T 
Sbjct: 607 KGLVDEAGKLFAQMKEASVELDVAAVVSILAACAESGSLSLGKRIHRYVR-KRNLGRSTH 665

Query: 90  LSNHLISMYFKCGSDVDARKVFDKIPV-KNLFSYNNMLSGYANLGMMKHARNLFDNMAER 148
           + N LI M+ KCG    A  VFD   V K+  S+N+++ G+A  G    A  LF  M ++
Sbjct: 666 VCNALIDMFCKCGCVNRADYVFDTETVQKDSVSWNSIIGGFAMHGHGDKALELFAQMKQQ 725

Query: 149 ----DVVSWNTMIIGYAKSGAVEEGLKFYKVLRR 178
               D V+   ++      G V+EG + +  + R
Sbjct: 726 GFNPDAVTMINVLSACTHMGFVDEGRRHFSNMER 759


>gi|357453927|ref|XP_003597244.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355486292|gb|AES67495.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 678

 Score =  295 bits (755), Expect = 5e-77,   Method: Compositional matrix adjust.
 Identities = 170/571 (29%), Positives = 281/571 (49%), Gaps = 64/571 (11%)

Query: 26  SLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKT 85
            ++SK + + A+     + +  I   + T +F+L+ CA      LG  +H          
Sbjct: 78  GMVSKDRFNNAVHLYASMHKAAIVPDSFTFSFVLKACARLNLFHLGVMIH---------- 127

Query: 86  PTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNM 145
                     S+ FK G D D            +F   N++  Y+  G ++ A  +FD+M
Sbjct: 128 ----------SLVFKTGFDCD------------VFVKTNVVCFYSKCGFLRDAWKVFDDM 165

Query: 146 AERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTR 205
             ++VVSW  MI G  + G   E +  ++ L    +  + F    +L  C +L +L+  R
Sbjct: 166 VVKNVVSWTGMICGCIEFGKFREAVDLFRGLLESGLRPDGFVIVRVLRACARLGDLESGR 225

Query: 206 QVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLG 265
            +   +   G   NV +++S+VD                                Y K G
Sbjct: 226 WIDRCMRECGLSRNVFVATSLVDM-------------------------------YTKCG 254

Query: 266 DMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLC 325
            ME A  +F+ M EK+ V W+ +I GY  NGL ++A+ELF  M  + +RP+ +     L 
Sbjct: 255 SMEEARFVFDGMVEKDIVCWSAMIQGYASNGLPREAIELFFEMRKVNVRPDCYAMVGALS 314

Query: 326 ACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSM 385
           +CAS+ +L+ G    G +    F SN ++ +SLID Y+KCG + +   V+ +   K+  +
Sbjct: 315 SCASLGALELGNWAKGLMNYEEFLSNPVLGTSLIDFYAKCGSMEEALGVYKMMKEKDR-V 373

Query: 386 LWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESM 445
           ++N +IS L  +G    A  +F  M +  + P++ T   +L  CTH+GLV +G  YF SM
Sbjct: 374 VFNAVISGLAMYGQVGAAFGVFGQMGKFGIPPNEHTFVGLLCGCTHAGLVDDGRHYFNSM 433

Query: 446 THDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDM 505
           +HD  + P  EH+ C+++LLA+AG  D+  N ++ MP + +  +W +L G CR+H    +
Sbjct: 434 SHDFSVTPTIEHYGCMVDLLARAGFLDEAHNLIKGMPMKANVIVWGSLLGGCRLHRETQL 493

Query: 506 GRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIEN 565
              V+ QLI+  P +S  + LLS+IYSA  +    EK+R  +NE+  +K    SW+E++ 
Sbjct: 494 AEHVLKQLIELEPWNSGHYVLLSNIYSASRRWDEAEKIRSTVNEKGMQKLPGYSWVEVDG 553

Query: 566 KVHAFSVSDSLHPMRDVLYSVLEQLAGQMGE 596
            VH F V D+ HP+   +Y  LE L   + E
Sbjct: 554 VVHEFLVGDTSHPLSQKIYEKLESLFKDLKE 584



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 36/128 (28%), Positives = 57/128 (44%), Gaps = 10/128 (7%)

Query: 325 CACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQ---VFDLTDNK 381
           C  + +  LKH K  H  L+R N   +  ++S  I + S     N+ +    VF  T   
Sbjct: 9   CIASGLKCLKHAKLAHCRLLRLNLHHDNDLLS--IILRSTINFSNNAQYPILVFHKTPTN 66

Query: 382 ENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTY 441
            N+ L+NTMI  +        A+ L+  M ++++ PD  T + +L AC    L   G+  
Sbjct: 67  SNTFLYNTMIRGMVSKDRFNNAVHLYASMHKAAIVPDSFTFSFVLKACARLNLFHLGV-- 124

Query: 442 FESMTHDL 449
              M H L
Sbjct: 125 ---MIHSL 129


>gi|297740904|emb|CBI31086.3| unnamed protein product [Vitis vinifera]
          Length = 766

 Score =  295 bits (755), Expect = 5e-77,   Method: Compositional matrix adjust.
 Identities = 152/470 (32%), Positives = 254/470 (54%), Gaps = 35/470 (7%)

Query: 115 PVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYK 174
           PV N F+   ++  Y     ++ AR +FD     D+V    MI GY  +G     L+ ++
Sbjct: 284 PVANTFA---LIDIYFKCRDVEMARKIFDQRTPVDIVVCTAMISGYVLNGMNNNALEIFR 340

Query: 175 VLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCG 234
            L +  +  N  + A +L  C  L  L L +++HG +L  G   +  + S+I+D YAKCG
Sbjct: 341 WLLQERMRANSVTLASVLPACAGLAALTLGKELHGHILKNGHGGSCYVGSAIMDMYAKCG 400

Query: 235 ELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTR 294
            L                               + A + F  + +K+ V W ++I   ++
Sbjct: 401 RL-------------------------------DLAHQTFIGISDKDAVCWNSMITSCSQ 429

Query: 295 NGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIV 354
           NG  ++A++LF +M +   + +  + S+ L ACA++ +L +GK++H F++R  FRS+   
Sbjct: 430 NGKPEEAIDLFRQMGMAGTKYDCVSISAALSACANLPALHYGKEIHAFMMRGAFRSDLFA 489

Query: 355 MSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSS 414
            S+LIDMYSKCG L+   +VFD  + K N + WN++I+A   HG  + ++ LFH M+   
Sbjct: 490 ESALIDMYSKCGNLDLACRVFDTMEEK-NEVSWNSIIAAYGNHGRLKDSLNLFHGMLGDG 548

Query: 415 VKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQL 474
           ++PD +T   I++AC H+G V EG+ YF  MT +LGI+   EH+AC+++L  +AG  ++ 
Sbjct: 549 IQPDHVTFLAIISACGHAGQVDEGIHYFRCMTEELGIMARMEHYACMVDLFGRAGRLNEA 608

Query: 475 MNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSAL 534
              +  MP+  D+ +W  L G CR+HGN+++       L D +PQ+S  + LLS++++  
Sbjct: 609 FGMINSMPFSPDAGVWGTLLGACRLHGNVELAEVASRNLFDLDPQNSGYYVLLSNVHANA 668

Query: 535 GKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLY 584
           G+   V K+R L+ ER  +K    SWI++ N  H F  +D  HP    +Y
Sbjct: 669 GQWESVLKIRSLMKERGVQKVPGCSWIDVNNTTHMFVAADRSHPQSSQIY 718



 Score =  164 bits (415), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 121/442 (27%), Positives = 208/442 (47%), Gaps = 42/442 (9%)

Query: 107 ARKVFDKIPVK----NLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAK 162
            R V DKI       ++F  ++++  Y+  G +  AR LFD M  +D V WN M+ GY K
Sbjct: 166 GRVVHDKIQFMGFELDVFVGSSLIKFYSENGCIHDARYLFDRMPSKDGVLWNVMLNGYVK 225

Query: 163 SGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFL--SNV 220
           +G  +     +  +RR   + N  +FA +L++C     +    Q+HG V+ +G    S V
Sbjct: 226 NGDWDNATGVFMEMRRTETNPNSVTFACVLSVCASEIMINFGSQLHGLVVSSGLEMDSPV 285

Query: 221 VISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEK 280
             + +++D Y KC               RDV                E A K+F++    
Sbjct: 286 ANTFALIDIYFKC---------------RDV----------------EMARKIFDQRTPV 314

Query: 281 NPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVH 340
           + V  T +I+GY  NG+   ALE+F  ++  R+R N  T +S L ACA + +L  GK++H
Sbjct: 315 DIVVCTAMISGYVLNGMNNNALEIFRWLLQERMRANSVTLASVLPACAGLAALTLGKELH 374

Query: 341 GFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYD 400
           G +++     +  V S+++DMY+KCG L+   Q F    +K+ ++ WN+MI++ +Q+G  
Sbjct: 375 GHILKNGHGGSCYVGSAIMDMYAKCGRLDLAHQTFIGISDKD-AVCWNSMITSCSQNGKP 433

Query: 401 EQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHAC 460
           E+AI LF  M  +  K D ++++  L+AC +   +  G      M        +    + 
Sbjct: 434 EEAIDLFRQMGMAGTKYDCVSISAALSACANLPALHYGKEIHAFMMRG-AFRSDLFAESA 492

Query: 461 LIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQS 520
           LI++ ++ G  D      + M  E +   WN++      HG +     +   ++    Q 
Sbjct: 493 LIDMYSKCGNLDLACRVFDTME-EKNEVSWNSIIAAYGNHGRLKDSLNLFHGMLGDGIQP 551

Query: 521 SATHGLLSSIYSALGKGRLVEK 542
              H    +I SA G    V++
Sbjct: 552 D--HVTFLAIISACGHAGQVDE 571



 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 116/469 (24%), Positives = 204/469 (43%), Gaps = 82/469 (17%)

Query: 52  AETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVF 111
           A  L  ILQ C +   L  G++ H  + L         L   L+ MY  CG+ +DA+ +F
Sbjct: 46  APQLVSILQTCTDPSGLSQGRQAHAQM-LVNGIGYNGILGTKLLGMYVLCGAFLDAKNIF 104

Query: 112 DKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLK 171
            ++ +                             +E     WN MI G+   G  +  L 
Sbjct: 105 YQLRLW---------------------------CSE----PWNWMIRGFTMMGQFDFALL 133

Query: 172 FYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYA 231
           FY  +       ++++F  ++  C  L  + L R VH ++   GF  +V + SS++  Y+
Sbjct: 134 FYFKMLGCGTLPDKYTFPYVIKACGGLNSVALGRVVHDKIQFMGFELDVFVGSSLIKFYS 193

Query: 232 KCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAG 291
           + G + DAR LFD   ++D + W  M++GY K GD ++A+ +F EM              
Sbjct: 194 ENGCIHDARYLFDRMPSKDGVLWNVMLNGYVKNGDWDNATGVFMEMRRT----------- 242

Query: 292 YTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSN 351
                                  PN  TF+  L  CAS + +  G Q+HG ++ +    +
Sbjct: 243 --------------------ETNPNSVTFACVLSVCASEIMINFGSQLHGLVVSSGLEMD 282

Query: 352 TIVMSS--LIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHD 409
           + V ++  LID+Y KC  +   R++FD      + ++   MIS    +G +  A+ +F  
Sbjct: 283 SPVANTFALIDIYFKCRDVEMARKIFD-QRTPVDIVVCTAMISGYVLNGMNNNALEIFRW 341

Query: 410 MVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHAC-----LIEL 464
           +++  ++ + +TLA +L AC  +GL    L   E   H   I+ N    +C     ++++
Sbjct: 342 LLQERMRANSVTLASVLPAC--AGLAALTLGK-ELHGH---ILKNGHGGSCYVGSAIMDM 395

Query: 465 LAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGN----IDMGRKV 509
            A+ G  D L +Q      + D+  WN++   C  +G     ID+ R++
Sbjct: 396 YAKCGRLD-LAHQTFIGISDKDAVCWNSMITSCSQNGKPEEAIDLFRQM 443



 Score = 99.0 bits (245), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 86/379 (22%), Positives = 158/379 (41%), Gaps = 68/379 (17%)

Query: 28  ISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPT 87
           +  G  + A+     L Q  +R  + TLA +L  CA   +L LGK +H H+ L      +
Sbjct: 327 VLNGMNNNALEIFRWLLQERMRANSVTLASVLPACAGLAALTLGKELHGHI-LKNGHGGS 385

Query: 88  TFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAE 147
            ++ + ++ MY KCG    A + F  I  K+   +N+M++  +  G  + A +LF  M  
Sbjct: 386 CYVGSAIMDMYAKCGRLDLAHQTFIGISDKDAVCWNSMITSCSQNGKPEEAIDLFRQMG- 444

Query: 148 RDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQV 207
                                G K+  V           S +  L+ C  L  L   +++
Sbjct: 445 -------------------MAGTKYDCV-----------SISAALSACANLPALHYGKEI 474

Query: 208 HGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDM 267
           H  ++   F S++   S+++D Y+KCG L  A R+FD  + ++ ++W ++++ Y   G +
Sbjct: 475 HAFMMRGAFRSDLFAESALIDMYSKCGNLDLACRVFDTMEEKNEVSWNSIIAAYGNHGRL 534

Query: 268 ESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCAC 327
           + +  LF+ M                   LG              I+P+  TF + + AC
Sbjct: 535 KDSLNLFHGM-------------------LGDG------------IQPDHVTFLAIISAC 563

Query: 328 ASIVSLKHGKQVHGFLIRTNFRSNTIVM---SSLIDMYSKCGCLNDGRQVFDLTDNKENS 384
                +  G  +H F   T        M   + ++D++ + G LN+   + +      ++
Sbjct: 564 GHAGQVDEG--IHYFRCMTEELGIMARMEHYACMVDLFGRAGRLNEAFGMINSMPFSPDA 621

Query: 385 MLWNTMISALTQHGYDEQA 403
            +W T++ A   HG  E A
Sbjct: 622 GVWGTLLGACRLHGNVELA 640



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 66/271 (24%), Positives = 123/271 (45%), Gaps = 14/271 (5%)

Query: 19  CLIQSFLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHL 78
           C      S    G+  EAI     +   G +    +++  L  CA   +L  GK +H  +
Sbjct: 419 CWNSMITSCSQNGKPEEAIDLFRQMGMAGTKYDCVSISAALSACANLPALHYGKEIHAFM 478

Query: 79  KLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHA 138
                ++   F  + LI MY KCG+   A +VFD +  KN  S+N++++ Y N G +K +
Sbjct: 479 MRGAFRS-DLFAESALIDMYSKCGNLDLACRVFDTMEEKNEVSWNSIIAAYGNHGRLKDS 537

Query: 139 RNLFDNM----AERDVVSWNTMIIGYAKSGAVEEGLKFYKVL-RRFSISCNEFSFAGILT 193
            NLF  M     + D V++  +I     +G V+EG+ +++ +     I      +A ++ 
Sbjct: 538 LNLFHGMLGDGIQPDHVTFLAIISACGHAGQVDEGIHYFRCMTEELGIMARMEHYACMVD 597

Query: 194 ICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCG--ELSD--ARRLFDETDAR 249
           +  +   L    +  G +    F  +  +  +++ A    G  EL++  +R LFD  D +
Sbjct: 598 LFGRAGRLN---EAFGMINSMPFSPDAGVWGTLLGACRLHGNVELAEVASRNLFD-LDPQ 653

Query: 250 DVLTWTTMVSGYAKLGDMESASKLFNEMPEK 280
           +   +  + + +A  G  ES  K+ + M E+
Sbjct: 654 NSGYYVLLSNVHANAGQWESVLKIRSLMKER 684


>gi|359484088|ref|XP_002263394.2| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic [Vitis vinifera]
          Length = 762

 Score =  295 bits (755), Expect = 5e-77,   Method: Compositional matrix adjust.
 Identities = 180/577 (31%), Positives = 294/577 (50%), Gaps = 75/577 (12%)

Query: 16  PNNCLIQSFLSLISKGQLS-EAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRV 74
           P   L  S +  +S  +   EA+     + Q G++    T  F+++ C ES     G  V
Sbjct: 158 PPPSLYNSLIRALSSSKTPLEALPLYHTMLQSGLKPDHMTYPFVIKACNESSVTWFGLLV 217

Query: 75  HLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGM 134
           H                 H++   F+C S                +  ++++  YAN   
Sbjct: 218 H----------------THVVKSGFECDS----------------YIVSSLIHLYANGKD 245

Query: 135 MKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTI 194
           +  A+ LF+  + RDVVSWN MI GY K   VE G                         
Sbjct: 246 LGAAKQLFNLCSARDVVSWNAMIDGYVKH--VEMG------------------------- 278

Query: 195 CVKLEELKLTRQVHGQVLVTGFLSNVVIS-SSIVDAYAKCGELSDARRLFDETDARDVLT 253
                        H +++    +   VIS +++++ YA  G++ +A+RLFDE   R++++
Sbjct: 279 -------------HARMVFDRMVCRDVISWNTMINGYAIVGKIDEAKRLFDEMPERNLVS 325

Query: 254 WTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRI 313
           W +M++G+ K G++E A  LF+EMP ++ VSW +++A Y + G   +AL LF +M  + +
Sbjct: 326 WNSMLAGFVKCGNVEDAFGLFSEMPCRDVVSWNSMLACYAQCGKPNEALALFDQMRAVGV 385

Query: 314 RPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQ 373
           +P + T  S L ACA + +L  G  +H ++       N+IV ++L+DMY+KCG ++   Q
Sbjct: 386 KPTEATVVSLLSACAHLGALDKGLHLHTYINDNRIEVNSIVGTALVDMYAKCGKISLATQ 445

Query: 374 VFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSG 433
           VF+  ++K+  + WNT+I+ +  HG  ++A +LF +M  + V+P+ IT   IL+AC+H+G
Sbjct: 446 VFNAMESKD-VLAWNTIIAGMAIHGNVKEAQQLFKEMKEAGVEPNDITFVAILSACSHAG 504

Query: 434 LVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNAL 493
           +V EG    + M+   GI P  EH+ C+I+LLA+AG  ++ M  +  MP E +     AL
Sbjct: 505 MVDEGQKLLDCMSSSYGIEPKVEHYGCVIDLLARAGFLEEAMELIGTMPMEPNPSALGAL 564

Query: 494 HGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFK 553
            G CRIHGN ++G  V  +LI+  P  S  + LLS+IY+A  K     KVR L+      
Sbjct: 565 LGGCRIHGNFELGEMVGKRLINLQPCHSGRYILLSNIYAAAKKWDDARKVRNLMKVNGIS 624

Query: 554 KEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQL 590
           K   +S IE++  VH F   D  HP  + +Y  L ++
Sbjct: 625 KVPGVSVIELKGMVHRFVAGDWSHPESNKIYEKLNEI 661



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 60/272 (22%), Positives = 112/272 (41%), Gaps = 15/272 (5%)

Query: 270 ASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACAS 329
           A  +F+ +    P  + +LI   + +    +AL L+  M+   ++P+  T+   + AC  
Sbjct: 148 AKTIFHHLQNPPPSLYNSLIRALSSSKTPLEALPLYHTMLQSGLKPDHMTYPFVIKACNE 207

Query: 330 IVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNT 389
                 G  VH  ++++ F  ++ ++SSLI +Y+    L   +Q+F+L   ++  + WN 
Sbjct: 208 SSVTWFGLLVHTHVVKSGFECDSYIVSSLIHLYANGKDLGAAKQLFNLCSARD-VVSWNA 266

Query: 390 MISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDL 449
           MI    +H     A  +F  MV      D I+   ++N     G + E    F+ M    
Sbjct: 267 MIDGYVKHVEMGHARMVFDRMVCR----DVISWNTMINGYAIVGKIDEAKRLFDEMPERN 322

Query: 450 GIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKV 509
            +  N      ++    + G  +       +MP   D   WN++       G  +    +
Sbjct: 323 LVSWNS-----MLAGFVKCGNVEDAFGLFSEMPCR-DVVSWNSMLACYAQCGKPNEALAL 376

Query: 510 VDQL--IDQNPQSSATHGLLSSI--YSALGKG 537
            DQ+  +   P  +    LLS+     AL KG
Sbjct: 377 FDQMRAVGVKPTEATVVSLLSACAHLGALDKG 408


>gi|449488546|ref|XP_004158080.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21300-like [Cucumis sativus]
          Length = 762

 Score =  295 bits (755), Expect = 5e-77,   Method: Compositional matrix adjust.
 Identities = 176/563 (31%), Positives = 281/563 (49%), Gaps = 64/563 (11%)

Query: 28  ISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPT 87
           +  G + EA      +   GI+  + T A  L    E  SLK  K +H ++ +       
Sbjct: 236 VQNGLMGEAEHLFRGMISAGIKPDSITFASFLPCVNELLSLKHCKEIHGYI-IRHAVVLD 294

Query: 88  TFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAE 147
            FL + LI +YFKC  DV+  +       KNL   ++                       
Sbjct: 295 VFLKSALIDIYFKC-RDVEMAQ-------KNLCQSSSF---------------------- 324

Query: 148 RDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQV 207
            D V   TMI GY  +G  +E L+ ++ L +  +     +F+ I      L  L L +++
Sbjct: 325 -DTVVCTTMISGYVLNGKNKEALEAFRWLVQERMKPTSVTFSSIFPAFAGLAALNLGKEL 383

Query: 208 HGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDM 267
           HG ++ T       + S+I+D YAKCG L                               
Sbjct: 384 HGSIIKTKLDEKCHVGSAILDMYAKCGRL------------------------------- 412

Query: 268 ESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCAC 327
           + A ++FN + EK+ + W ++I   ++NG   +A+ LF +M +   R +  + S  L AC
Sbjct: 413 DLACRVFNRITEKDAICWNSMITSCSQNGRPGEAINLFRQMGMEGTRYDCVSISGALSAC 472

Query: 328 ASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLW 387
           A++ +L +GK++HG +I+   RS+    SSLIDMY+KCG LN  R+VFD    K N + W
Sbjct: 473 ANLPALHYGKEIHGLMIKGPLRSDLYAESSLIDMYAKCGNLNFSRRVFDRMQEK-NEVSW 531

Query: 388 NTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTH 447
           N++ISA   HG  ++ + LFH+M+R+ ++PD +T   I++AC H+G V EG+ Y+  MT 
Sbjct: 532 NSIISAYGNHGDLKECLALFHEMLRNGIQPDHVTFLGIISACGHAGQVDEGIRYYHLMTE 591

Query: 448 DLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGR 507
           + GI    EH+AC+ ++  +AG   +    +  MP+  D+ +W  L G C IHGN+++  
Sbjct: 592 EYGIPARMEHYACVADMFGRAGRLHEAFETINSMPFPPDAGVWGTLLGACHIHGNVELAE 651

Query: 508 KVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKV 567
                L D +P +S  + LL+++ +  GK R V KVR ++ ER  +K    SWIE+ N  
Sbjct: 652 VASKHLFDLDPLNSGYYVLLANVQAGAGKWRKVLKVRSIMKERGVRKVPGYSWIEVNNAT 711

Query: 568 HAFSVSDSLHPMRDVLYSVLEQL 590
           H F  +D  HP+   +YSVL+ L
Sbjct: 712 HMFVAADGSHPLTAQIYSVLDSL 734



 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 132/523 (25%), Positives = 235/523 (44%), Gaps = 79/523 (15%)

Query: 28  ISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPT 87
           +  G    AI     +    I+  + T A +L  CA    L LG ++H            
Sbjct: 135 VKNGDSGNAIKIFLEMRHSEIKPNSVTFACVLSVCASEAMLDLGTQLH------------ 182

Query: 88  TFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAE 147
                    +   CG ++D+       PV N      +L+ Y+    ++ AR LFD + +
Sbjct: 183 --------GIAVGCGLELDS-------PVAN-----TLLAMYSKCQCLQAARKLFDTLPQ 222

Query: 148 RDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQV 207
            D+VSWN +I GY ++G + E    ++ +    I  +  +FA  L    +L  LK  +++
Sbjct: 223 SDLVSWNGIISGYVQNGLMGEAEHLFRGMISAGIKPDSITFASFLPCVNELLSLKHCKEI 282

Query: 208 HGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDM 267
           HG ++    + +V + S+++D Y KC ++  A++   ++ + D +  TTM+S        
Sbjct: 283 HGYIIRHAVVLDVFLKSALIDIYFKCRDVEMAQKNLCQSSSFDTVVCTTMIS-------- 334

Query: 268 ESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCAC 327
                                  GY  NG  ++ALE F  ++  R++P   TFSS   A 
Sbjct: 335 -----------------------GYVLNGKNKEALEAFRWLVQERMKPTSVTFSSIFPAF 371

Query: 328 ASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLW 387
           A + +L  GK++HG +I+T       V S+++DMY+KCG L+   +VF+    K+ ++ W
Sbjct: 372 AGLAALNLGKELHGSIIKTKLDEKCHVGSAILDMYAKCGRLDLACRVFNRITEKD-AICW 430

Query: 388 NTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACT-----HSGLVQEGLTYF 442
           N+MI++ +Q+G   +AI LF  M     + D ++++  L+AC      H G    GL   
Sbjct: 431 NSMITSCSQNGRPGEAINLFRQMGMEGTRYDCVSISGALSACANLPALHYGKEIHGLMIK 490

Query: 443 ESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGN 502
             +  DL         + LI++ A+ G  +      ++M  E +   WN++      HG+
Sbjct: 491 GPLRSDL------YAESSLIDMYAKCGNLNFSRRVFDRMQ-EKNEVSWNSIISAYGNHGD 543

Query: 503 IDMGRKVVDQLIDQNPQSSATHGLLSSIYSALG-KGRLVEKVR 544
           +     +  +++    Q    H     I SA G  G++ E +R
Sbjct: 544 LKECLALFHEMLRNGIQPD--HVTFLGIISACGHAGQVDEGIR 584



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 120/489 (24%), Positives = 218/489 (44%), Gaps = 79/489 (16%)

Query: 18  NCLIQSFLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLH 77
           N +I+ F  +   GQ + A+     +   G+     T  ++++ C   KS+K+GK VH  
Sbjct: 27  NWMIRGFTMM---GQFNYALLFYLKMLGAGVSPDKYTFPYVVKACCGLKSVKMGKIVHET 83

Query: 78  LKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKH 137
           + L   K                                +++F  ++++  YA  G +  
Sbjct: 84  VNLMGLK--------------------------------EDVFVGSSLIKLYAENGHLSD 111

Query: 138 ARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVK 197
           A+ LFDN+ ++D V WN M+ GY K+G     +K +  +R   I  N  +FA +L++C  
Sbjct: 112 AQYLFDNIPQKDSVLWNVMLNGYVKNGDSGNAIKIFLEMRHSEIKPNSVTFACVLSVCAS 171

Query: 198 LEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTM 257
              L L  Q+HG  +  G   +  ++++++  Y+KC  L  AR+LFD     D+++W  +
Sbjct: 172 EAMLDLGTQLHGIAVGCGLELDSPVANTLLAMYSKCQCLQAARKLFDTLPQSDLVSWNGI 231

Query: 258 VSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQ 317
           +SGY                                +NGL  +A  LF  M+   I+P+ 
Sbjct: 232 ISGY-------------------------------VQNGLMGEAEHLFRGMISAGIKPDS 260

Query: 318 HTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDL 377
            TF+S L     ++SLKH K++HG++IR     +  + S+LID+Y KC  +   ++    
Sbjct: 261 ITFASFLPCVNELLSLKHCKEIHGYIIRHAVVLDVFLKSALIDIYFKCRDVEMAQKNL-C 319

Query: 378 TDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQE 437
             +  ++++  TMIS    +G +++A+  F  +V+  +KP  +T + I  A      +  
Sbjct: 320 QSSSFDTVVCTTMISGYVLNGKNKEALEAFRWLVQERMKPTSVTFSSIFPAFAGLAALNL 379

Query: 438 GLTYFESMTHDLGIIPNQEHHAC-----LIELLAQAGCSDQLMNQLEKMPYEHDSYLWNA 492
           G     S      II  +    C     ++++ A+ G  D       ++  E D+  WN+
Sbjct: 380 GKELHGS------IIKTKLDEKCHVGSAILDMYAKCGRLDLACRVFNRIT-EKDAICWNS 432

Query: 493 LHGVCRIHG 501
           +   C  +G
Sbjct: 433 MITSCSQNG 441



 Score =  152 bits (385), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 89/298 (29%), Positives = 143/298 (47%), Gaps = 32/298 (10%)

Query: 129 YANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSF 188
           Y   G +K A+NLF  +      +WN MI G+   G     L FY  +    +S ++++F
Sbjct: 2   YVRTGSLKDAKNLFYTLQLGCTSAWNWMIRGFTMMGQFNYALLFYLKMLGAGVSPDKYTF 61

Query: 189 AGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDA 248
             ++  C  L+ +K+ + VH  V + G   +V + SS++  Y                  
Sbjct: 62  PYVVKACCGLKSVKMGKIVHETVNLMGLKEDVFVGSSLIKLY------------------ 103

Query: 249 RDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRM 308
                        A+ G +  A  LF+ +P+K+ V W  ++ GY +NG    A+++F  M
Sbjct: 104 -------------AENGHLSDAQYLFDNIPQKDSVLWNVMLNGYVKNGDSGNAIKIFLEM 150

Query: 309 MILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCL 368
               I+PN  TF+  L  CAS   L  G Q+HG  +      ++ V ++L+ MYSKC CL
Sbjct: 151 RHSEIKPNSVTFACVLSVCASEAMLDLGTQLHGIAVGCGLELDSPVANTLLAMYSKCQCL 210

Query: 369 NDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVIL 426
              R++FD T  + + + WN +IS   Q+G   +A  LF  M+ + +KPD IT A  L
Sbjct: 211 QAARKLFD-TLPQSDLVSWNGIISGYVQNGLMGEAEHLFRGMISAGIKPDSITFASFL 267



 Score =  105 bits (261), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 62/233 (26%), Positives = 115/233 (49%), Gaps = 3/233 (1%)

Query: 261 YAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTF 320
           Y + G ++ A  LF  +      +W  +I G+T  G    AL  + +M+   + P+++TF
Sbjct: 2   YVRTGSLKDAKNLFYTLQLGCTSAWNWMIRGFTMMGQFNYALLFYLKMLGAGVSPDKYTF 61

Query: 321 SSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDN 380
              + AC  + S+K GK VH  +     + +  V SSLI +Y++ G L+D + +FD    
Sbjct: 62  PYVVKACCGLKSVKMGKIVHETVNLMGLKEDVFVGSSLIKLYAENGHLSDAQYLFDNIPQ 121

Query: 381 KENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLT 440
           K+ S+LWN M++   ++G    AI++F +M  S +KP+ +T A +L+ C    ++  G T
Sbjct: 122 KD-SVLWNVMLNGYVKNGDSGNAIKIFLEMRHSEIKPNSVTFACVLSVCASEAMLDLG-T 179

Query: 441 YFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNAL 493
               +    G+  +      L+ + ++  C        + +P + D   WN +
Sbjct: 180 QLHGIAVGCGLELDSPVANTLLAMYSKCQCLQAARKLFDTLP-QSDLVSWNGI 231


>gi|413922867|gb|AFW62799.1| putative pentatricopeptide repeat family protein [Zea mays]
          Length = 882

 Score =  295 bits (755), Expect = 5e-77,   Method: Compositional matrix adjust.
 Identities = 177/588 (30%), Positives = 291/588 (49%), Gaps = 69/588 (11%)

Query: 22  QSFLS-LISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKL 80
            +F+S  ++ G    A+  L  +   G+     TL+ +L+ CA + +  LG+++H     
Sbjct: 275 NAFISGCVTHGHDHRALELLLQMKSSGLVPNVFTLSSVLKACAGAGAFNLGRQIH----- 329

Query: 81  TQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARN 140
                                G  V A   FD+      F    ++  YA  G +  AR 
Sbjct: 330 ---------------------GFMVKAVADFDE------FVAVGLVDMYAKHGFLDDARK 362

Query: 141 LFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRR--FSISCNEFSFAGILTICVKL 198
           +FD M  RD++ WN +I G +  G   E L  +  +R+    +  N  + A +L      
Sbjct: 363 VFDFMPRRDLILWNALISGCSHDGRHGEVLSLFHRMRKEGLDLDVNRTTLASVLKSTASS 422

Query: 199 EELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMV 258
           E +  TRQVH      G LS+  + + ++D+Y KCG+L                      
Sbjct: 423 EAICHTRQVHALAEKIGLLSDSHVINGLIDSYWKCGQL---------------------- 460

Query: 259 SGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQH 318
                    + A K+F E    + +S TT++   ++   G+ A++LF +M+   + P+  
Sbjct: 461 ---------DYAIKVFKESRSDDIISSTTMMTALSQCDHGEDAIKLFVQMLRKGLEPDSF 511

Query: 319 TFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLT 378
             SS L AC S+ + + GKQVH  LI+  F S+    ++L+  Y+KCG + D    F   
Sbjct: 512 VLSSLLNACTSLSAYEQGKQVHAHLIKRQFTSDVFAGNALVYAYAKCGSIEDADMAFSGL 571

Query: 379 DNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEG 438
             +   + W+ MI  L QHG+ ++A+ LFH M+   V P+ ITL  +L+AC H+GLV + 
Sbjct: 572 PER-GIVSWSAMIGGLAQHGHGKRALDLFHRMLDEGVAPNHITLTSVLSACNHAGLVDDA 630

Query: 439 LTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCR 498
             YFESM    GI   +EH+AC+I++L +AG  +  M  +  MP++ ++ +W AL G  R
Sbjct: 631 KKYFESMKETFGIDRTEEHYACMIDILGRAGKLEDAMELVNNMPFQANAAVWGALLGASR 690

Query: 499 IHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAI 558
           +H + ++GR   ++L    P+ S TH LL++ Y++ G    + KVR+L+ +   KKE A+
Sbjct: 691 VHRDPELGRMAAEKLFTLEPEKSGTHVLLANTYASAGMWDEMAKVRKLMKDSNVKKEPAM 750

Query: 559 SWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQMGEDA--PSLDAD 604
           SW+EI++KVH F V D  HPM   +Y  L +L   M +    P+++ D
Sbjct: 751 SWVEIKDKVHTFIVGDKSHPMTRDIYGKLAELGDLMNKAGYVPNVEVD 798



 Score =  168 bits (426), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 102/339 (30%), Positives = 168/339 (49%), Gaps = 39/339 (11%)

Query: 100 KCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNM----AERDVVSWNT 155
           + G+ V A  V  ++ V ++F  N +++ Y   GM+  AR +FD       ER+ VSWNT
Sbjct: 117 RFGAQVHALAVATRL-VHDVFVANALVAVYGGFGMVDEARRMFDEYVGVGGERNAVSWNT 175

Query: 156 MIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTG 215
           MI  Y K+    + +  ++ +       NEF F+ ++  C    +L+  RQVHG V+ TG
Sbjct: 176 MISAYVKNDQSGDAIGVFREMVWSGERPNEFGFSCVVNACTGSRDLEAGRQVHGAVVRTG 235

Query: 216 FLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFN 275
           +  +V  ++++VD Y+K G++  A  +F++  A DV++W   +S                
Sbjct: 236 YEKDVFTANALVDMYSKLGDIEMAATVFEKMPAADVVSWNAFIS---------------- 279

Query: 276 EMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKH 335
                          G   +G   +ALEL  +M    + PN  T SS L ACA   +   
Sbjct: 280 ---------------GCVTHGHDHRALELLLQMKSSGLVPNVFTLSSVLKACAGAGAFNL 324

Query: 336 GKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALT 395
           G+Q+HGF+++     +  V   L+DMY+K G L+D R+VFD    + + +LWN +IS  +
Sbjct: 325 GRQIHGFMVKAVADFDEFVAVGLVDMYAKHGFLDDARKVFDFMP-RRDLILWNALISGCS 383

Query: 396 QHGYDEQAIRLFHDMVRSSVKPD--KITLAVILNACTHS 432
             G   + + LFH M +  +  D  + TLA +L +   S
Sbjct: 384 HDGRHGEVLSLFHRMRKEGLDLDVNRTTLASVLKSTASS 422



 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 121/458 (26%), Positives = 198/458 (43%), Gaps = 76/458 (16%)

Query: 48  IRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDA 107
           +R P ET+   L +   S+SL  G  +H HL    +       SNHL+++Y +C     A
Sbjct: 1   MRTP-ETIGSALARFGTSRSLFAGAHLHSHL---LKSGLLAGFSNHLLTLYSRCRLPSAA 56

Query: 108 RKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVE 167
           R VFD+IP     S++++++ Y+N GM + A                             
Sbjct: 57  RAVFDEIPDPCHVSWSSLVTAYSNNGMPRDA----------------------------- 87

Query: 168 EGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIV 227
             L  ++ +R   + CNEF+   +L       +++   QVH   + T  + +V +++++V
Sbjct: 88  --LLAFRAMRGRGVPCNEFALPVVLKCA---PDVRFGAQVHALAVATRLVHDVFVANALV 142

Query: 228 DAYAKCGELSDARRLFDE----TDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPV 283
             Y   G + +ARR+FDE       R+ ++W TM+S Y K                    
Sbjct: 143 AVYGGFGMVDEARRMFDEYVGVGGERNAVSWNTMISAYVK-------------------- 182

Query: 284 SWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFL 343
                      N     A+ +F  M+    RPN+  FS  + AC     L+ G+QVHG +
Sbjct: 183 -----------NDQSGDAIGVFREMVWSGERPNEFGFSCVVNACTGSRDLEAGRQVHGAV 231

Query: 344 IRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQA 403
           +RT +  +    ++L+DMYSK G +     VF+      + + WN  IS    HG+D +A
Sbjct: 232 VRTGYEKDVFTANALVDMYSKLGDIEMAATVFEKMP-AADVVSWNAFISGCVTHGHDHRA 290

Query: 404 IRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIE 463
           + L   M  S + P+  TL+ +L AC  +G    G      M   +    ++     L++
Sbjct: 291 LELLLQMKSSGLVPNVFTLSSVLKACAGAGAFNLGRQIHGFMVKAVADF-DEFVAVGLVD 349

Query: 464 LLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHG 501
           + A+ G  D      + MP   D  LWNAL   C   G
Sbjct: 350 MYAKHGFLDDARKVFDFMP-RRDLILWNALISGCSHDG 386



 Score =  105 bits (261), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 68/237 (28%), Positives = 117/237 (49%), Gaps = 8/237 (3%)

Query: 269 SASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACA 328
           +A  +F+E+P+   VSW++L+  Y+ NG+ + AL  F R M  R  P        +  CA
Sbjct: 55  AARAVFDEIPDPCHVSWSSLVTAYSNNGMPRDALLAF-RAMRGRGVPCNEFALPVVLKCA 113

Query: 329 SIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDL---TDNKENSM 385
             V  + G QVH   + T    +  V ++L+ +Y   G +++ R++FD       + N++
Sbjct: 114 PDV--RFGAQVHALAVATRLVHDVFVANALVAVYGGFGMVDEARRMFDEYVGVGGERNAV 171

Query: 386 LWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESM 445
            WNTMISA  ++     AI +F +MV S  +P++   + ++NACT S  ++ G     ++
Sbjct: 172 SWNTMISAYVKNDQSGDAIGVFREMVWSGERPNEFGFSCVVNACTGSRDLEAGRQVHGAV 231

Query: 446 THDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGN 502
               G   +      L+++ ++ G  +      EKMP   D   WNA    C  HG+
Sbjct: 232 VR-TGYEKDVFTANALVDMYSKLGDIEMAATVFEKMPAA-DVVSWNAFISGCVTHGH 286


>gi|242090705|ref|XP_002441185.1| hypothetical protein SORBIDRAFT_09g021880 [Sorghum bicolor]
 gi|241946470|gb|EES19615.1| hypothetical protein SORBIDRAFT_09g021880 [Sorghum bicolor]
          Length = 878

 Score =  295 bits (755), Expect = 5e-77,   Method: Compositional matrix adjust.
 Identities = 179/643 (27%), Positives = 316/643 (49%), Gaps = 101/643 (15%)

Query: 28  ISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPT 87
           I  G LS+ +     +   G+   + T A +L   A    + LG+RVH            
Sbjct: 181 IQDGALSDVMELFFRMRAEGVWPNSVTFASVLSVVASQGMVDLGRRVHAQ---------- 230

Query: 88  TFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAE 147
                   S+ F C S V              F  N++++ YA  G+++ AR +F  M  
Sbjct: 231 --------SVKFGCCSTV--------------FVCNSLMNMYAKCGLVEEARVVFCGMET 268

Query: 148 RDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQV 207
           RD+VSWNT++ G   +G   E L+ +   R       + ++A ++ +C  +++L L RQ+
Sbjct: 269 RDMVSWNTLMAGLVLNGHDLEALQLFHDSRSSITMLTQSTYATVIKLCANIKQLGLARQL 328

Query: 208 HGQVLVTGFLS--------------------------------NVVISSSIVDAYAKCGE 235
           H  VL  GF S                                NVV  +++++   + G+
Sbjct: 329 HSSVLKRGFHSYGNVMTALMDAYSKAGQLGNALDIFLLMSGSQNVVSWTAMINGCIQNGD 388

Query: 236 LSDARRLF----DETDARDVLTWTTMVSG------------------------------- 260
           +  A  LF    ++  A +  T++T+++                                
Sbjct: 389 VPLAAALFSRMREDGVAPNDFTYSTILTASVASLPPQIHAQVIKTNYECTSIVGTALLAS 448

Query: 261 YAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTF 320
           Y+KL + E A  +F  + +K+ VSW+ ++  Y + G    A  +F +M +  ++PN+ T 
Sbjct: 449 YSKLCNTEEALSIFKMIDQKDVVSWSAMLTCYAQAGDSDGATNIFIKMTMHGLKPNEFTI 508

Query: 321 SSCLCACAS-IVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTD 379
           SS + ACAS    +  G+Q H   I+        V S+L+ MY++ G +   + +F+   
Sbjct: 509 SSVIDACASPTAGVDLGRQFHAISIKHRCHDALCVSSALVSMYARKGSIESAQCIFERQT 568

Query: 380 NKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGL 439
           +++  + WN+M+S   QHGY ++A+ +F  M    ++ D +T   ++  C H+GLV+EG 
Sbjct: 569 DRD-LVSWNSMLSGYAQHGYSQKALDVFRQMEAEGIEMDGVTFLSVIMGCAHAGLVEEGQ 627

Query: 440 TYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRI 499
            YF+SM  D GI P  EH+AC+++L ++AG  D+ M+ +E M +     +W  L G C++
Sbjct: 628 RYFDSMARDYGITPTMEHYACMVDLYSRAGKLDEAMSLIEGMSFPAGPMVWRTLLGACKV 687

Query: 500 HGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAIS 559
           H N+++G+   ++L+   P  SAT+ LLS+IYSA GK +  ++VR+L++ ++ KKE   S
Sbjct: 688 HKNVELGKLAAEKLLSLEPFDSATYVLLSNIYSAAGKWKEKDEVRKLMDTKKVKKEAGCS 747

Query: 560 WIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQMGEDAPSLD 602
           WI+I+NKVH+F  SD  HP+ + +Y+ L  +  ++ ++    D
Sbjct: 748 WIQIKNKVHSFIASDKSHPLSEQIYAKLRAMTTKLKQEGYCPD 790



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 110/414 (26%), Positives = 178/414 (42%), Gaps = 67/414 (16%)

Query: 18  NCLIQSFLSLISKGQLSEAISS-LDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHL 76
           N L  +      +G + +A+   LD+    G R+    L  +L+ C       LGK++H 
Sbjct: 68  NTLDHALFDHARRGSVHQALDHFLDVHRCHGGRVGGGALVGVLKVCGSVPDRVLGKQLHG 127

Query: 77  HLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMK 136
                        +   L+ MY K  S VD RKVF+ +P +N+ ++ ++L+GY   G + 
Sbjct: 128 LCIRCGHDRGDVGVGTSLVDMYMKWHSVVDGRKVFEAMPKRNVVTWTSLLTGYIQDGALS 187

Query: 137 HARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICV 196
               LF  M    V  W                              N  +FA +L++  
Sbjct: 188 DVMELFFRMRAEGV--WP-----------------------------NSVTFASVLSVVA 216

Query: 197 KLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTT 256
               + L R+VH Q +  G  S V + +S+++ YAKCG + +AR +F   + RD+++W  
Sbjct: 217 SQGMVDLGRRVHAQSVKFGCCSTVFVCNSLMNMYAKCGLVEEARVVFCGMETRDMVSW-- 274

Query: 257 MVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELF--TRMMILRIR 314
                                         TL+AG   NG   +AL+LF  +R  I  + 
Sbjct: 275 -----------------------------NTLMAGLVLNGHDLEALQLFHDSRSSITML- 304

Query: 315 PNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQV 374
             Q T+++ +  CA+I  L   +Q+H  +++  F S   VM++L+D YSK G L +   +
Sbjct: 305 -TQSTYATVIKLCANIKQLGLARQLHSSVLKRGFHSYGNVMTALMDAYSKAGQLGNALDI 363

Query: 375 FDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNA 428
           F L    +N + W  MI+   Q+G    A  LF  M    V P+  T + IL A
Sbjct: 364 FLLMSGSQNVVSWTAMINGCIQNGDVPLAAALFSRMREDGVAPNDFTYSTILTA 417



 Score =  128 bits (322), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 105/405 (25%), Positives = 183/405 (45%), Gaps = 67/405 (16%)

Query: 126 LSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLK-FYKVLRRFSISCN 184
           L    NL     AR  FD +  R+ +  +  +  +A+ G+V + L  F  V R       
Sbjct: 45  LENQTNLNDATGARQAFDEIPHRNTL--DHALFDHARRGSVHQALDHFLDVHRCHGGRVG 102

Query: 185 EFSFAGILTICVKLEELKLTRQVHGQVLVTGF-LSNVVISSSIVDAYAKCGELSDARRLF 243
             +  G+L +C  + +  L +Q+HG  +  G    +V + +S+VD Y K           
Sbjct: 103 GGALVGVLKVCGSVPDRVLGKQLHGLCIRCGHDRGDVGVGTSLVDMYMK----------- 151

Query: 244 DETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALE 303
                     W ++V G           K+F  MP++N V+WT+L+ GY ++G     +E
Sbjct: 152 ----------WHSVVDG----------RKVFEAMPKRNVVTWTSLLTGYIQDGALSDVME 191

Query: 304 LFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYS 363
           LF RM    + PN  TF+S L   AS   +  G++VH   ++    S   V +SL++MY+
Sbjct: 192 LFFRMRAEGVWPNSVTFASVLSVVASQGMVDLGRRVHAQSVKFGCCSTVFVCNSLMNMYA 251

Query: 364 KCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLA 423
           KCG + + R VF   + ++  + WNT+++ L  +G+D +A++LFHD   S     + T A
Sbjct: 252 KCGLVEEARVVFCGMETRD-MVSWNTLMAGLVLNGHDLEALQLFHDSRSSITMLTQSTYA 310

Query: 424 VILNACT-----------HSGLVQEGL-TYFESMTHDLGIIPNQEHHACLIELLAQAGCS 471
            ++  C            HS +++ G  +Y   MT              L++  ++AG  
Sbjct: 311 TVIKLCANIKQLGLARQLHSSVLKRGFHSYGNVMT-------------ALMDAYSKAG-- 355

Query: 472 DQLMNQLE---KMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQL 513
            QL N L+    M    +   W A+   C  +G++ +   +  ++
Sbjct: 356 -QLGNALDIFLLMSGSQNVVSWTAMINGCIQNGDVPLAAALFSRM 399


>gi|224131918|ref|XP_002328140.1| predicted protein [Populus trichocarpa]
 gi|222837655|gb|EEE76020.1| predicted protein [Populus trichocarpa]
          Length = 534

 Score =  295 bits (755), Expect = 5e-77,   Method: Compositional matrix adjust.
 Identities = 155/459 (33%), Positives = 262/459 (57%), Gaps = 37/459 (8%)

Query: 120 FSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRF 179
           F  N +++ Y   G++  A+++FD M +R+VVSW TMI  Y+ +   ++ L+F  ++ R 
Sbjct: 1   FLINILINMYVKFGLLHDAQDVFDKMPDRNVVSWTTMISAYSAAKLNDKALEFLVLMLRE 60

Query: 180 SISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDA 239
            +  N F+++ +L  C  L  L   RQ+H  ++  G  S+V + S+++D Y++       
Sbjct: 61  GVRPNMFTYSSVLRACDGLFNL---RQLHCCIIKIGLDSDVFVRSALIDVYSR------- 110

Query: 240 RRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQ 299
                         W          G++E+A ++F+EM   + V W+++IAG+ +N  G 
Sbjct: 111 --------------W----------GELENALRVFDEMVTGDLVVWSSIIAGFAQNSDGD 146

Query: 300 KALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLI 359
           +AL LF RM        Q T +S L AC  +  L+ G+QVH  +++  +  + I+ ++L+
Sbjct: 147 EALRLFKRMKRAGFLAQQTTLTSVLRACTGLALLELGRQVHVHVLK--YDQDLILNNALL 204

Query: 360 DMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDK 419
           DMY KCG L D   VF +   +++ + W+TMI+ L Q+GY ++A++LF  M    +KP+ 
Sbjct: 205 DMYCKCGSLEDANAVF-VRMVEKDVISWSTMIAGLAQNGYSKEALKLFESMKVLGIKPNY 263

Query: 420 ITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLE 479
           +T+  +L AC+H+GLV+EGL YF SM    GI P +EH+ C+I+LL +AG   + ++ + 
Sbjct: 264 VTIVGVLFACSHAGLVEEGLYYFHSMKELFGIDPGREHYGCMIDLLGRAGRLSEAVDLIN 323

Query: 480 KMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRL 539
           +M  E D+  W AL   CR+H N+D+      Q++  +PQ + T+ LLS+IY+   +   
Sbjct: 324 EMECEPDAVTWRALLNACRVHRNVDVAIHAAKQILRLDPQDAGTYVLLSNIYANTQRWND 383

Query: 540 VEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHP 578
           V +VR+ +  R  KKE   SWIE+  ++HAF + D  HP
Sbjct: 384 VAEVRRTMTNRGIKKEPGCSWIEVSKQIHAFILGDRSHP 422



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 79/312 (25%), Positives = 145/312 (46%), Gaps = 67/312 (21%)

Query: 118 NLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLR 177
           ++F  + ++  Y+  G +++A  +FD M   D+V W+++I G+A++   +E L+ +K ++
Sbjct: 97  DVFVRSALIDVYSRWGELENALRVFDEMVTGDLVVWSSIIAGFAQNSDGDEALRLFKRMK 156

Query: 178 RFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELS 237
           R      + +   +L  C  L  L+L RQVH  VL   +  +++++++++D Y KCG L 
Sbjct: 157 RAGFLAQQTTLTSVLRACTGLALLELGRQVHVHVL--KYDQDLILNNALLDMYCKCGSL- 213

Query: 238 DARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGL 297
                                         E A+ +F  M EK+ +SW+T+IAG  +NG 
Sbjct: 214 ------------------------------EDANAVFVRMVEKDVISWSTMIAGLAQNGY 243

Query: 298 GQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSS 357
            ++AL+LF  M +L I+PN  T    L AC+           H  L+             
Sbjct: 244 SKEALKLFESMKVLGIKPNYVTIVGVLFACS-----------HAGLVEEGLYY------- 285

Query: 358 LIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKP 417
                      +  +++F +   +E+   +  MI  L + G   +A+ L ++M     +P
Sbjct: 286 ----------FHSMKELFGIDPGREH---YGCMIDLLGRAGRLSEAVDLINEM---ECEP 329

Query: 418 DKITLAVILNAC 429
           D +T   +LNAC
Sbjct: 330 DAVTWRALLNAC 341



 Score = 75.5 bits (184), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 64/230 (27%), Positives = 98/230 (42%), Gaps = 40/230 (17%)

Query: 35  EAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLH-LKLTQRKTPTTFLSNH 93
           EA+     + + G      TL  +L+ C     L+LG++VH+H LK  Q       L+N 
Sbjct: 147 EALRLFKRMKRAGFLAQQTTLTSVLRACTGLALLELGRQVHVHVLKYDQ----DLILNNA 202

Query: 94  LISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSW 153
           L+ MY KCGS  DA  V                               F  M E+DV+SW
Sbjct: 203 LLDMYCKCGSLEDANAV-------------------------------FVRMVEKDVISW 231

Query: 154 NTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTIC--VKLEELKLTRQVHGQV 211
           +TMI G A++G  +E LK ++ ++   I  N  +  G+L  C    L E  L    H   
Sbjct: 232 STMIAGLAQNGYSKEALKLFESMKVLGIKPNYVTIVGVLFACSHAGLVEEGLY-YFHSMK 290

Query: 212 LVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDAR-DVLTWTTMVSG 260
            + G          ++D   + G LS+A  L +E +   D +TW  +++ 
Sbjct: 291 ELFGIDPGREHYGCMIDLLGRAGRLSEAVDLINEMECEPDAVTWRALLNA 340


>gi|255584555|ref|XP_002533004.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223527215|gb|EEF29379.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 519

 Score =  295 bits (754), Expect = 5e-77,   Method: Compositional matrix adjust.
 Identities = 147/456 (32%), Positives = 259/456 (56%), Gaps = 1/456 (0%)

Query: 141 LFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEE 200
           LFD M E DV+S  T+I  +A+    EE +  +  +   +I  NEF+FA ++     L+ 
Sbjct: 55  LFDEMPELDVLSVTTLIGRFARQHRYEEAMCLFSRMLLLNIKPNEFTFATVIHSSTGLKN 114

Query: 201 LKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSG 260
           + L +Q+H + +  G  + V + S+++D YAK     +AR  F++    +V+++TT++ G
Sbjct: 115 IYLGKQLHARTMKMGLNTIVFVGSAMLDFYAKLCSFEEARNAFEDIQKPNVVSYTTLIHG 174

Query: 261 YAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTF 320
           Y K G ++ A +LF EMPE+N VSW  ++ G+++ G  ++A+ LF  M+     PNQ TF
Sbjct: 175 YLKKGKIDDALQLFQEMPERNVVSWNAMVGGFSQMGHNEEAVSLFIEMLREGFMPNQSTF 234

Query: 321 SSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDN 380
              + + A++ SL  GK  H   +++   S+  V +SL+  Y+KCG + D   VF+   +
Sbjct: 235 PCAITSAANMASLGMGKSFHACAVKSLCTSDVFVCNSLVSFYAKCGSMEDSLLVFNELPD 294

Query: 381 KENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLT 440
           + N++ WN +I    Q+G  E A+  F  M  + ++P+ +TL  +L AC H+GLV++G  
Sbjct: 295 R-NTVSWNAVICGFAQNGRGEDAVIFFERMRAAGLRPNSVTLLGLLCACNHAGLVEKGYM 353

Query: 441 YFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIH 500
           YF  M  +   I   EH+AC+++LL++ G   +    L  +P++  +  W AL G C IH
Sbjct: 354 YFNQMRQEEPGILKPEHYACMVDLLSRFGRLKEAAKFLHDLPFDPGTGFWKALLGGCHIH 413

Query: 501 GNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISW 560
            N ++      +++  +P+  +++ +LS+ YSA G+ + V  +R+ + E+  K+    SW
Sbjct: 414 SNAELSDLAAQKILALDPEDVSSYVMLSNAYSAAGRWQQVSTIRREMKEKGLKRIPGCSW 473

Query: 561 IEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQMGE 596
           IE+ +K+H F  SD  H  ++ +YS L+    Q+ E
Sbjct: 474 IEVRSKIHVFLNSDKNHHQKEEIYSFLKFCVEQLRE 509



 Score =  124 bits (311), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 93/392 (23%), Positives = 168/392 (42%), Gaps = 48/392 (12%)

Query: 54  TLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDK 113
           T A ++      K++ LGK++H         T   F+ + ++  Y K  S  +AR  F+ 
Sbjct: 101 TFATVIHSSTGLKNIYLGKQLHARTMKMGLNT-IVFVGSAMLDFYAKLCSFEEARNAFED 159

Query: 114 IPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFY 173
           I   N+ SY  ++ GY   G +  A  LF  M ER+VVSWN M+ G+++ G  EE +  +
Sbjct: 160 IQKPNVVSYTTLIHGYLKKGKIDDALQLFQEMPERNVVSWNAMVGGFSQMGHNEEAVSLF 219

Query: 174 KVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKC 233
             + R     N+ +F   +T    +  L + +  H   + +   S+V + +S+V  YAKC
Sbjct: 220 IEMLREGFMPNQSTFPCAITSAANMASLGMGKSFHACAVKSLCTSDVFVCNSLVSFYAKC 279

Query: 234 GELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYT 293
           G + D+  +F+E   R+ ++W  ++ G+A+                              
Sbjct: 280 GSMEDSLLVFNELPDRNTVSWNAVICGFAQ------------------------------ 309

Query: 294 RNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVH-GFLIRTNFRSNT 352
            NG G+ A+  F RM    +RPN  T    LCAC       H   V  G++     R   
Sbjct: 310 -NGRGEDAVIFFERMRAAGLRPNSVTLLGLLCAC------NHAGLVEKGYMYFNQMRQEE 362

Query: 353 IVM------SSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRL 406
             +      + ++D+ S+ G L +  +          +  W  ++     H   E +   
Sbjct: 363 PGILKPEHYACMVDLLSRFGRLKEAAKFLHDLPFDPGTGFWKALLGGCHIHSNAELSDLA 422

Query: 407 FHDMVRSSVKPDKITLAVIL-NACTHSGLVQE 437
              ++  ++ P+ ++  V+L NA + +G  Q+
Sbjct: 423 AQKIL--ALDPEDVSSYVMLSNAYSAAGRWQQ 452



 Score = 95.5 bits (236), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 66/252 (26%), Positives = 125/252 (49%), Gaps = 9/252 (3%)

Query: 272 KLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIV 331
           +LF+EMPE + +S TTLI  + R    ++A+ LF+RM++L I+PN+ TF++ + +   + 
Sbjct: 54  ELFDEMPELDVLSVTTLIGRFARQHRYEEAMCLFSRMLLLNIKPNEFTFATVIHSSTGLK 113

Query: 332 SLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMI 391
           ++  GKQ+H   ++    +   V S+++D Y+K     + R  F+    K N + + T+I
Sbjct: 114 NIYLGKQLHARTMKMGLNTIVFVGSAMLDFYAKLCSFEEARNAFE-DIQKPNVVSYTTLI 172

Query: 392 SALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGI 451
               + G  + A++LF +M   +V    ++   ++   +  G  +E ++ F  M  + G 
Sbjct: 173 HGYLKKGKIDDALQLFQEMPERNV----VSWNAMVGGFSQMGHNEEAVSLFIEMLRE-GF 227

Query: 452 IPNQEHHACLIEL---LAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRK 508
           +PNQ    C I     +A  G          K     D ++ N+L       G+++    
Sbjct: 228 MPNQSTFPCAITSAANMASLGMGKSFHACAVKSLCTSDVFVCNSLVSFYAKCGSMEDSLL 287

Query: 509 VVDQLIDQNPQS 520
           V ++L D+N  S
Sbjct: 288 VFNELPDRNTVS 299



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 60/258 (23%), Positives = 111/258 (43%), Gaps = 12/258 (4%)

Query: 31  GQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFL 90
           G   EA+S    + + G      T    +   A   SL +GK  H    +    T   F+
Sbjct: 210 GHNEEAVSLFIEMLREGFMPNQSTFPCAITSAANMASLGMGKSFHA-CAVKSLCTSDVFV 268

Query: 91  SNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDV 150
            N L+S Y KCGS  D+  VF+++P +N  S+N ++ G+A  G  + A   F+ M    +
Sbjct: 269 CNSLVSFYAKCGSMEDSLLVFNELPDRNTVSWNAVICGFAQNGRGEDAVIFFERMRAAGL 328

Query: 151 VSWNTMIIGYA----KSGAVEEGLKFYKVLRRFSISC-NEFSFAGILTICVKLEELKLTR 205
              +  ++G       +G VE+G  ++  +R+          +A ++ +  +   LK   
Sbjct: 329 RPNSVTLLGLLCACNHAGLVEKGYMYFNQMRQEEPGILKPEHYACMVDLLSRFGRLKEAA 388

Query: 206 QVHGQVLV---TGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYA 262
           +    +     TGF    ++    + + A+  +L+  + L    D  DV ++  + + Y+
Sbjct: 389 KFLHDLPFDPGTGFW-KALLGGCHIHSNAELSDLAAQKIL--ALDPEDVSSYVMLSNAYS 445

Query: 263 KLGDMESASKLFNEMPEK 280
             G  +  S +  EM EK
Sbjct: 446 AAGRWQQVSTIRREMKEK 463


>gi|297824259|ref|XP_002880012.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297325851|gb|EFH56271.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 542

 Score =  295 bits (754), Expect = 6e-77,   Method: Compositional matrix adjust.
 Identities = 148/453 (32%), Positives = 258/453 (56%), Gaps = 3/453 (0%)

Query: 137 HARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFY--KVLRRFSISCNEFSFAGILTI 194
           +A  +F  +  ++   WNT+I G+++S   E  +  +   +    S+     ++  +   
Sbjct: 76  YAYLVFTRINHKNPFVWNTIIRGFSRSSFPEMAISIFIDMLCSSPSVKPQRLTYPSVFKA 135

Query: 195 CVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTW 254
              L   +  RQ+HG+V+  G   +  I ++++  Y  CG L +A RLF      DV+ W
Sbjct: 136 YASLGLARDGRQLHGRVIKEGLEDDSFIRNTMLHMYVTCGCLVEAWRLFVGMMGFDVVAW 195

Query: 255 TTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIR 314
            +++ G AK G ++ A KLF+EMP++N VSW ++I+G+ RNG  + ALE+F  M    ++
Sbjct: 196 NSIIMGLAKCGLIDQAQKLFDEMPQRNGVSWNSMISGFVRNGRFKDALEMFREMQERDVK 255

Query: 315 PNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQV 374
           P+  T  S L ACA + + + G+ +H +++R  F  N+IV+++LIDMY KCGC  +G +V
Sbjct: 256 PDGFTMVSLLNACAYLGASEQGRWIHKYIVRNRFELNSIVITALIDMYCKCGCFEEGLKV 315

Query: 375 FDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGL 434
           F+    K+ S  WN+MI  L  +G +E+A+ LF ++ R+ ++PD ++   +L AC HSG 
Sbjct: 316 FECAPTKQLS-CWNSMILGLANNGCEERAMDLFLELERTGLEPDSVSFIGVLTACAHSGE 374

Query: 435 VQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALH 494
           V +   +F  M     I P+ +H+ C++ +L  AG  D+    ++KMP E D+ +W++L 
Sbjct: 375 VHKAGEFFRLMREKYMIEPSIKHYTCMVNVLGGAGLLDEAEALIKKMPVEGDTIIWSSLL 434

Query: 495 GVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKK 554
             CR +GN++M ++  + L + +P  +  + L+S+ Y++ G      + R L+ ERQ +K
Sbjct: 435 AACRKNGNVEMAKRAANCLKNLDPDETCGYVLMSNAYASYGLFEEAVEQRLLMKERQMEK 494

Query: 555 EQAISWIEIENKVHAFSVSDSLHPMRDVLYSVL 587
           E   S IE++ +VH F      HP    +YS+L
Sbjct: 495 EVGCSSIEVDFEVHEFVSCGKKHPKSTEIYSLL 527



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 78/360 (21%), Positives = 172/360 (47%), Gaps = 47/360 (13%)

Query: 88  TFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAE 147
           +F+ N ++ MY  CG  V+A ++F  +   ++ ++N+++ G A  G++  A+ LFD M +
Sbjct: 161 SFIRNTMLHMYVTCGCLVEAWRLFVGMMGFDVVAWNSIIMGLAKCGLIDQAQKLFDEMPQ 220

Query: 148 RDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQV 207
           R+ VSWN+MI G+ ++G  ++ L+ ++ ++   +  + F+   +L  C  L   +  R +
Sbjct: 221 RNGVSWNSMISGFVRNGRFKDALEMFREMQERDVKPDGFTMVSLLNACAYLGASEQGRWI 280

Query: 208 HGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDM 267
           H  ++   F  N ++ ++++D Y KCG   +  ++F+    + +  W +M+ G A     
Sbjct: 281 HKYIVRNRFELNSIVITALIDMYCKCGCFEEGLKVFECAPTKQLSCWNSMILGLAN---- 336

Query: 268 ESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCAC 327
                                      NG  ++A++LF  +    + P+  +F   L AC
Sbjct: 337 ---------------------------NGCEERAMDLFLELERTGLEPDSVSFIGVLTAC 369

Query: 328 ASIVSLKHGKQVHGF-----LIRTNFRSNTIV--MSSLIDMYSKCGCLNDGRQVFDLTDN 380
           A      H  +VH       L+R  +     +   + ++++    G L++   +      
Sbjct: 370 A------HSGEVHKAGEFFRLMREKYMIEPSIKHYTCMVNVLGGAGLLDEAEALIKKMPV 423

Query: 381 KENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVIL-NACTHSGLVQEGL 439
           + ++++W+++++A  ++G  E A R  + +   ++ PD+    V++ NA    GL +E +
Sbjct: 424 EGDTIIWSSLLAACRKNGNVEMAKRAANCL--KNLDPDETCGYVLMSNAYASYGLFEEAV 481



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 83/335 (24%), Positives = 150/335 (44%), Gaps = 67/335 (20%)

Query: 191 ILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARD 250
           I T C  + ELK   Q+H  ++ TG +S+ V +S ++ A+  C   SD            
Sbjct: 31  IDTRCSTMRELK---QIHANLIKTGLISDTVAASRVL-AFC-CASPSD------------ 73

Query: 251 VLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMI 310
                     YA L        +F  +  KNP  W T+I G++R+   + A+ +F  M+ 
Sbjct: 74  --------RNYAYL--------VFTRINHKNPFVWNTIIRGFSRSSFPEMAISIFIDMLC 117

Query: 311 --LRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCL 368
               ++P + T+ S   A AS+   + G+Q+HG +I+     ++ + ++++ MY  CGCL
Sbjct: 118 SSPSVKPQRLTYPSVFKAYASLGLARDGRQLHGRVIKEGLEDDSFIRNTMLHMYVTCGCL 177

Query: 369 NDGRQVF---------------------DLTDNKE---------NSMLWNTMISALTQHG 398
            +  ++F                      L D  +         N + WN+MIS   ++G
Sbjct: 178 VEAWRLFVGMMGFDVVAWNSIIMGLAKCGLIDQAQKLFDEMPQRNGVSWNSMISGFVRNG 237

Query: 399 YDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHH 458
             + A+ +F +M    VKPD  T+  +LNAC + G  ++G    + +  +   + N    
Sbjct: 238 RFKDALEMFREMQERDVKPDGFTMVSLLNACAYLGASEQGRWIHKYIVRNRFEL-NSIVI 296

Query: 459 ACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNAL 493
             LI++  + GC ++ +   E  P +  S  WN++
Sbjct: 297 TALIDMYCKCGCFEEGLKVFECAPTKQLS-CWNSM 330


>gi|225460265|ref|XP_002278647.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14050,
           mitochondrial-like [Vitis vinifera]
          Length = 610

 Score =  295 bits (754), Expect = 6e-77,   Method: Compositional matrix adjust.
 Identities = 168/542 (30%), Positives = 291/542 (53%), Gaps = 35/542 (6%)

Query: 55  LAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKI 114
           L + LQ CA  +S  +GK++H H+  T      + LSN+LI+MY KC             
Sbjct: 6   LVYQLQACARHQSPPIGKKLHCHIIKTGIDQCKS-LSNNLINMYGKC------------- 51

Query: 115 PVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLK-FY 173
                             G+++ A NLF+ +  RD +SW +++    ++      L  F 
Sbjct: 52  ------------------GLIQDALNLFNQLPHRDPISWASILTANNQANLPHLTLSMFP 93

Query: 174 KVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKC 233
            + ++  +  + + FA ++  C  L  +K  +QVH   +V+    + V+ SS+VD YAKC
Sbjct: 94  AMFKQDGLQPDHYVFACLVKACAILGAMKQGKQVHATFIVSPVSDDDVVKSSLVDMYAKC 153

Query: 234 GELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYT 293
           G     R +FD   +++ ++WT M+SGYA+ G    A +LF +MP KN +SWT LI+G  
Sbjct: 154 GLPDIGRVVFDSISSKNSISWTAMISGYAQSGRKLDAIQLFQKMPVKNLLSWTALISGLV 213

Query: 294 RNGLGQKALELFTRMMILRIR-PNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNT 352
           ++G    +  LF  M    I   +    SS + A A++  L  GKQ+H  +I   + S+ 
Sbjct: 214 QSGNWVDSFYLFMEMRSKGIDIVDPFILSSIIGASANLAVLGLGKQIHCLVILLGYESSL 273

Query: 353 IVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVR 412
            V ++L+DMY+KC  +   +++F     ++  + W ++I    QHG  E+A+ L++ M+ 
Sbjct: 274 FVSNALVDMYAKCSDVLAAKKIFGRMVQRD-IVSWTSIIVGTAQHGLAEEALSLYNRMLS 332

Query: 413 SSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSD 472
           + +KP+++T   ++ AC+H GLV +G  +F SM  D GI P+ +H+ CL++LL+++G  +
Sbjct: 333 TGLKPNEVTFVGLIYACSHVGLVSKGRYFFNSMIKDYGINPSLQHYTCLLDLLSRSGHLE 392

Query: 473 QLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYS 532
           +  N ++ MP++ D   W AL   C  H N  +G +V D L+   P+  +T+ LLS+IY+
Sbjct: 393 EAENLIKAMPFKPDEATWAALLSACNHHRNTLIGIRVADHLLSLKPEDPSTYILLSNIYA 452

Query: 533 ALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAG 592
           +      V KVR+L+   + KKE   S I +  +   F   ++ HP ++ ++ +LE+L  
Sbjct: 453 SAAMWESVSKVRRLMAAMEVKKEPGYSCIVLGKESQVFLAGETSHPAKEEIFGLLEELDA 512

Query: 593 QM 594
           +M
Sbjct: 513 EM 514



 Score =  148 bits (374), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 101/402 (25%), Positives = 190/402 (47%), Gaps = 38/402 (9%)

Query: 42  LLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKC 101
           +  Q G++      A +++ CA   ++K GK+VH    +    +    + + L+ MY KC
Sbjct: 95  MFKQDGLQPDHYVFACLVKACAILGAMKQGKQVHATF-IVSPVSDDDVVKSSLVDMYAKC 153

Query: 102 GSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYA 161
           G     R VFD I  KN  S+  M+SGYA  G    A  LF  M  ++++SW  +I G  
Sbjct: 154 GLPDIGRVVFDSISSKNSISWTAMISGYAQSGRKLDAIQLFQKMPVKNLLSWTALISGLV 213

Query: 162 KSGAVEEGLKFYKVLRRFSIS-CNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNV 220
           +SG   +    +  +R   I   + F  + I+     L  L L +Q+H  V++ G+ S++
Sbjct: 214 QSGNWVDSFYLFMEMRSKGIDIVDPFILSSIIGASANLAVLGLGKQIHCLVILLGYESSL 273

Query: 221 VISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEK 280
            +S+++VD YAKC ++  A+++F     RD+++WT+++ G A+ G               
Sbjct: 274 FVSNALVDMYAKCSDVLAAKKIFGRMVQRDIVSWTSIIVGTAQHG--------------- 318

Query: 281 NPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVH 340
                           L ++AL L+ RM+   ++PN+ TF   + AC+ +  +  G+   
Sbjct: 319 ----------------LAEEALSLYNRMLSTGLKPNEVTFVGLIYACSHVGLVSKGRYFF 362

Query: 341 GFLIRTNFRSNTIVM--SSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHG 398
             +I+ ++  N  +   + L+D+ S+ G L +   +      K +   W  ++SA   H 
Sbjct: 363 NSMIK-DYGINPSLQHYTCLLDLLSRSGHLEEAENLIKAMPFKPDEATWAALLSACNHHR 421

Query: 399 YDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLT 440
                IR+   ++  S+KP+  +  ++L+    S  + E ++
Sbjct: 422 NTLIGIRVADHLL--SLKPEDPSTYILLSNIYASAAMWESVS 461


>gi|225463844|ref|XP_002265179.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 617

 Score =  295 bits (754), Expect = 6e-77,   Method: Compositional matrix adjust.
 Identities = 169/579 (29%), Positives = 296/579 (51%), Gaps = 68/579 (11%)

Query: 14  NLP-NNCLIQSFLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGK 72
           NLP  N +I+   +  S     E +     +  +GI     T+ F+L+ CAES++++ G+
Sbjct: 88  NLPLYNAIIRGLAT--SNNDSIEGLVVYKQMLSKGIVPDNYTIPFVLKACAESRAVREGE 145

Query: 73  RVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANL 132
            VH    +        ++SN L+ MY  C  DV                           
Sbjct: 146 EVHGQ-AIKMGLASDVYVSNTLMRMYAVC--DV--------------------------- 175

Query: 133 GMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGIL 192
             ++ AR +FD   +RD+VSW TMI GY K G   EG+  +  +   ++  +  +   +L
Sbjct: 176 --IRSARKVFDTSPQRDLVSWTTMIQGYVKMGFAREGVGLFFEMCGENLQADGMTLVIVL 233

Query: 193 TICVKLEELKLTRQVHGQVLVTGFLS-NVVISSSIVDAYAKCGELSDARRLFDETDARDV 251
           + C +L +L+L R++H  ++    ++ +V + +++VD Y KC                  
Sbjct: 234 SSCARLGDLRLGRKLHRYIIRNSNVNLDVFVGNALVDMYLKC------------------ 275

Query: 252 LTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMIL 311
                        GD   A K+F EMP KN VSW ++I+G  + G  +++L +F +M  L
Sbjct: 276 -------------GDANFARKVFQEMPVKNVVSWNSMISGLAQKGQFKESLYMFRKMQRL 322

Query: 312 RIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDG 371
            ++P+  T  + L +CA++  L+ GK VH +L R   R++  + ++L+DMY+KCG ++  
Sbjct: 323 GVKPDDVTLVAVLNSCANLGVLELGKWVHAYLDRNQIRADGFIGNALVDMYAKCGSIDQA 382

Query: 372 RQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTH 431
             VF    N+++   +  MI  L  HG   +A+ LF +M +  ++PD++T   +L AC+H
Sbjct: 383 CWVFQAM-NRKDVYSYTAMIVGLAMHGQGGKALDLFSEMPKMGIEPDEVTFVGVLTACSH 441

Query: 432 SGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWN 491
            GLV+EG  YFE M+    + P  EH+ C+++LL +AG  ++    +  MP E D+++  
Sbjct: 442 VGLVEEGRKYFEDMSTIYNLRPQLEHYGCMVDLLGRAGLINEAEEFIRNMPIEPDAFVLG 501

Query: 492 ALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQ 551
           AL G C+IHG +++G  V+ ++    P+    + L+S+IYS+  + R   K+R+ + ER 
Sbjct: 502 ALLGACKIHGKVELGESVMKKIEKIEPRKDGAYVLMSNIYSSANRWRDALKLRKTMKERN 561

Query: 552 FKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQL 590
            +K    S IE++  +H F   D  HP    +Y +L+++
Sbjct: 562 LEKTPGCSSIELDGVIHEFQKGDKSHPKIKEIYKLLDEI 600


>gi|225450761|ref|XP_002279376.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
           [Vitis vinifera]
          Length = 584

 Score =  295 bits (754), Expect = 6e-77,   Method: Compositional matrix adjust.
 Identities = 163/527 (30%), Positives = 276/527 (52%), Gaps = 38/527 (7%)

Query: 101 CGSDVDARKVFDKI----PVKNLFSYNNMLSGYA-NLGMMKHARNLFDNMAERDVVSWNT 155
           C S  D +K+  ++     +K+ F     +  YA +   + +A  +F  +   D  SW T
Sbjct: 37  CKSTEDLKKIHAQLIITGQIKDTFIATKTVESYAVSARNIDYAFWVFVGINYPDSYSWTT 96

Query: 156 MIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTG 215
           MI G+ ++   E+ L+FY ++R+  +  N+F+F  +L         +  R VHG+++  G
Sbjct: 97  MIRGFVEAKNPEKALEFYGLMRQRGVELNKFTFLFVLKAYGLRPSYQEGRIVHGKLVKVG 156

Query: 216 FLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFN 275
           F  +V   ++++  Y KCG ++DA  LFDE    +V+TW TM++G    GD E A +LF 
Sbjct: 157 FCYDVFTRNALIHMYLKCGSITDAHLLFDEMPNHNVVTWNTMITGCFGCGDTERARRLFG 216

Query: 276 EMPEKNP-------------------------------VSWTTLIAGYTRNGLGQKALEL 304
           EMPE+N                                VSW ++I+ Y +NG   +ALEL
Sbjct: 217 EMPERNVGSWNAVVGGYSKLGHVDIARSLFDLMPERDVVSWGSMISAYVQNGRAAEALEL 276

Query: 305 FTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSK 364
           F  MM+  +  +    +S L ACA I +L  G+ +H ++ R+  R++  + ++L+DMY+K
Sbjct: 277 FKEMMLAGVSADSIIITSILSACAQIGALDMGRWIHAYMKRSKLRNDVFLDTALVDMYAK 336

Query: 365 CGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAV 424
           CGC++    VF+ T  ++N   WN M+S L  HG+   A+ LF  M  + V P+ IT   
Sbjct: 337 CGCIDTAFGVFN-TMPRKNLCSWNAMLSGLAIHGHGFAALELFKQMESTGVGPNDITFVA 395

Query: 425 ILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYE 484
           +L+AC+H G V+EG   F  M  +  I P  EH+ C++++L + G  ++    +  MP E
Sbjct: 396 VLSACSHIGSVEEGWKKFNQMDKEFNITPKVEHYGCMVDILCRQGLINEAKEMIRTMPLE 455

Query: 485 HDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVR 544
            +  +W AL   C++HG  ++G  VV  +     +    + LLS+I++A  +   VEK R
Sbjct: 456 PNVVIWGALLNACKVHGYTNVGEDVVGYIQKLVSEDGGCYVLLSNIFAAKSQWNEVEKTR 515

Query: 545 QLINERQFKKE-QAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQL 590
           +++ +   +K+    S IE+++ VH F   D LH     + +V+E+L
Sbjct: 516 KMMKQMGVEKKIPGYSSIELDSVVHDFFAEDRLHSKWREVSTVIERL 562



 Score =  159 bits (403), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 107/397 (26%), Positives = 180/397 (45%), Gaps = 64/397 (16%)

Query: 35  EAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHL 94
           +A+    L+ QRG+ L   T  F+L+      S + G+ VH  L +        F  N L
Sbjct: 109 KALEFYGLMRQRGVELNKFTFLFVLKAYGLRPSYQEGRIVHGKL-VKVGFCYDVFTRNAL 167

Query: 95  ISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLS--------------------------- 127
           I MY KCGS  DA  +FD++P  N+ ++N M++                           
Sbjct: 168 IHMYLKCGSITDAHLLFDEMPNHNVVTWNTMITGCFGCGDTERARRLFGEMPERNVGSWN 227

Query: 128 ----GYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISC 183
               GY+ LG +  AR+LFD M ERDVVSW +MI  Y ++G   E L+ +K +    +S 
Sbjct: 228 AVVGGYSKLGHVDIARSLFDLMPERDVVSWGSMISAYVQNGRAAEALELFKEMMLAGVSA 287

Query: 184 NEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLF 243
           +      IL+ C ++  L + R +H  +  +   ++V + +++VD YAKCG +  A  +F
Sbjct: 288 DSIIITSILSACAQIGALDMGRWIHAYMKRSKLRNDVFLDTALVDMYAKCGCIDTAFGVF 347

Query: 244 DETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALE 303
           +    +++ +W  M+SG A                                +G G  ALE
Sbjct: 348 NTMPRKNLCSWNAMLSGLAI-------------------------------HGHGFAALE 376

Query: 304 LFTRMMILRIRPNQHTFSSCLCACASIVSLKHG-KQVHGFLIRTNFRSNTIVMSSLIDMY 362
           LF +M    + PN  TF + L AC+ I S++ G K+ +      N          ++D+ 
Sbjct: 377 LFKQMESTGVGPNDITFVAVLSACSHIGSVEEGWKKFNQMDKEFNITPKVEHYGCMVDIL 436

Query: 363 SKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGY 399
            + G +N+ +++      + N ++W  +++A   HGY
Sbjct: 437 CRQGLINEAKEMIRTMPLEPNVVIWGALLNACKVHGY 473



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 67/265 (25%), Positives = 124/265 (46%), Gaps = 19/265 (7%)

Query: 26  SLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKT 85
           + +  G+ +EA+     +   G+   +  +  IL  CA+  +L +G+ +H ++K ++ + 
Sbjct: 263 AYVQNGRAAEALELFKEMMLAGVSADSIIITSILSACAQIGALDMGRWIHAYMKRSKLRN 322

Query: 86  PTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNM 145
              FL   L+ MY KCG    A  VF+ +P KNL S+N MLSG A  G    A  LF  M
Sbjct: 323 -DVFLDTALVDMYAKCGCIDTAFGVFNTMPRKNLCSWNAMLSGLAIHGHGFAALELFKQM 381

Query: 146 AERDV----VSWNTMIIGYAKSGAVEEGL-KFYKVLRRFSISCNEFSFAGILTICVK--- 197
               V    +++  ++   +  G+VEEG  KF ++ + F+I+     +  ++ I  +   
Sbjct: 382 ESTGVGPNDITFVAVLSACSHIGSVEEGWKKFNQMDKEFNITPKVEHYGCMVDILCRQGL 441

Query: 198 ---LEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGE--LSDARRLFDETDARDVL 252
               +E+  T  +   V++ G L N    +  V  Y   GE  +   ++L  E     VL
Sbjct: 442 INEAKEMIRTMPLEPNVVIWGALLN----ACKVHGYTNVGEDVVGYIQKLVSEDGGCYVL 497

Query: 253 TWTTMVSGYAKLGDMESASKLFNEM 277
             + + +  ++  ++E   K+  +M
Sbjct: 498 L-SNIFAAKSQWNEVEKTRKMMKQM 521


>gi|296087368|emb|CBI33742.3| unnamed protein product [Vitis vinifera]
          Length = 562

 Score =  295 bits (754), Expect = 6e-77,   Method: Compositional matrix adjust.
 Identities = 147/376 (39%), Positives = 227/376 (60%), Gaps = 1/376 (0%)

Query: 219 NVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMP 278
           +V   ++I+  +A  G++  A++LFD    + +++ T M++ YAK G++++A  LF+ M 
Sbjct: 92  SVFFWTAIIHGHALRGDVVSAQQLFDTMPEKSLVSLTAMLTCYAKHGELDAARVLFDGME 151

Query: 279 EKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQ 338
           E++ V W  +I GYT+NG+  +AL LF RM+  + +PN+ T  S L AC  + +L+ G+ 
Sbjct: 152 ERDGVCWNVMIDGYTQNGMPNEALVLFRRMLKAKAKPNEVTVLSVLSACGQLGALESGRW 211

Query: 339 VHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHG 398
           VH ++     + N  V ++L+DMYSKCG L D R VFD  D+K+  + WN+MI     HG
Sbjct: 212 VHSYIENNGIQFNVHVGTALVDMYSKCGSLEDARLVFDKIDDKD-VVAWNSMIVGYAMHG 270

Query: 399 YDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHH 458
           + ++A++LF  M R  + P  IT   IL+AC HSG V EG   F  M  + GI P  EH+
Sbjct: 271 FSQEALQLFKSMCRMGLHPTNITFIGILSACGHSGWVTEGWDIFNKMKDEYGIEPKIEHY 330

Query: 459 ACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNP 518
            C++ LL +AG  +Q    ++ M  E D  LW  L G CR+HG I +G K+V+ L+DQN 
Sbjct: 331 GCMVNLLGRAGHVEQAYELVKNMNIEPDPVLWGTLLGACRLHGKIALGEKIVELLVDQNL 390

Query: 519 QSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHP 578
            +S T+ LLS+IY+A+G    V ++R ++ +   KKE   S IE+ NKVH F      HP
Sbjct: 391 ANSGTYILLSNIYAAVGNWDGVARLRTMMKDSGVKKEPGCSSIEVNNKVHEFLAGGLNHP 450

Query: 579 MRDVLYSVLEQLAGQM 594
            R  +Y +LE++ G +
Sbjct: 451 KRKEIYMMLEEINGWL 466



 Score =  149 bits (377), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 102/357 (28%), Positives = 158/357 (44%), Gaps = 65/357 (18%)

Query: 82  QRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNL 141
           + + P+ F    +I  +   G  V A+++FD +P K+L S   ML+ YA  G +  AR L
Sbjct: 87  RTQNPSVFFWTAIIHGHALRGDVVSAQQLFDTMPEKSLVSLTAMLTCYAKHGELDAARVL 146

Query: 142 FDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEEL 201
           FD M ERD V WN MI GY ++G   E L  ++ + +     NE +   +L+ C +L  L
Sbjct: 147 FDGMEERDGVCWNVMIDGYTQNGMPNEALVLFRRMLKAKAKPNEVTVLSVLSACGQLGAL 206

Query: 202 KLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGY 261
           +  R VH  +   G   NV + +++VD Y+KCG L DAR +FD+ D +DV+ W +M+ GY
Sbjct: 207 ESGRWVHSYIENNGIQFNVHVGTALVDMYSKCGSLEDARLVFDKIDDKDVVAWNSMIVGY 266

Query: 262 AKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFS 321
           A                                +G  Q+AL+LF  M  + + P   TF 
Sbjct: 267 A-------------------------------MHGFSQEALQLFKSMCRMGLHPTNITFI 295

Query: 322 SCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNK 381
             L AC     +  G  +       N   +   +   I+ Y   GC              
Sbjct: 296 GILSACGHSGWVTEGWDIF------NKMKDEYGIEPKIEHY---GC-------------- 332

Query: 382 ENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEG 438
                   M++ L + G+ EQA  L  +M   +++PD +    +L AC   G +  G
Sbjct: 333 --------MVNLLGRAGHVEQAYELVKNM---NIEPDPVLWGTLLGACRLHGKIALG 378


>gi|115456858|ref|NP_001052029.1| Os04g0110500 [Oryza sativa Japonica Group]
 gi|38345581|emb|CAE01779.2| OSJNBa0027H06.17 [Oryza sativa Japonica Group]
 gi|113563600|dbj|BAF13943.1| Os04g0110500 [Oryza sativa Japonica Group]
 gi|125589117|gb|EAZ29467.1| hypothetical protein OsJ_13541 [Oryza sativa Japonica Group]
 gi|215736988|dbj|BAG95917.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 531

 Score =  295 bits (754), Expect = 7e-77,   Method: Compositional matrix adjust.
 Identities = 155/476 (32%), Positives = 250/476 (52%), Gaps = 7/476 (1%)

Query: 125 MLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCN 184
           +LS YA LG   HAR LFD M E+ +V    M   +  SG   + +  +  +    +  +
Sbjct: 52  LLSAYAALGSPDHARRLFDEMPEQGLVPRTAMARAHVASGQAAQAIAVFGDMVADGVFPD 111

Query: 185 EFSFAGILTICVKLEELKLTR----QVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDAR 240
             + A  L  C         R    ++H  ++ +G   +V +S+ ++  Y +CG+L+ +R
Sbjct: 112 NVALAVALGACHGAGSWTARRNPGKKIHALIVTSGIEPDVFVSTELIRVYGECGKLAVSR 171

Query: 241 RLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQK 300
           R+FD+  +R  +TW  M+  YA+ G +++A +LF  MP ++ VSW T++AGY   G  ++
Sbjct: 172 RVFDDMPSRSTITWNAMLHQYARHGKVDTAYELFLAMPRRDVVSWNTVMAGYCVAGRCRE 231

Query: 301 ALELFTRMMI---LRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSS 357
           AL LF +M+      + PN  T S+ L ACA    L+ G  VH ++ R     +  +   
Sbjct: 232 ALGLFRQMVSPSSCAVHPNVPTMSTILGACAGAGCLETGIWVHAYIERNRMNDDGYLDRC 291

Query: 358 LIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKP 417
           LIDMY KCG +++  QVF+    K +   W T+I  L  HG    A+R+F  M  + + P
Sbjct: 292 LIDMYCKCGSIDNALQVFEKAPRKRDLFSWTTVICGLAMHGRATDALRMFDMMQDNGICP 351

Query: 418 DKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQ 477
           D +TL  +LNAC H GLV EGL YF SM     I P  EH+ C+I+LL + G   +  + 
Sbjct: 352 DDVTLVGVLNACAHGGLVDEGLGYFYSMEAKFRITPKIEHYGCMIDLLGRVGRLQEAYSM 411

Query: 478 LEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKG 537
           +  MP + ++ +W A    C++HGN+++G+   ++L   +P       +LSS+Y+     
Sbjct: 412 IRTMPMDPNTVIWGAFLSACKVHGNMELGKIAAEELTRLDPDDPWGRVMLSSMYAKAQDW 471

Query: 538 RLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQ 593
             + + R+ +N  Q KK    S IE++ +VH F    S HP    + SVL+ +  Q
Sbjct: 472 IGLARERREMNSMQVKKTPGCSSIELKGEVHEFVAGGSQHPQYAEICSVLQDVEAQ 527



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 103/387 (26%), Positives = 167/387 (43%), Gaps = 55/387 (14%)

Query: 28  ISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKL----GKRVHLHLKLTQR 83
           ++ GQ ++AI+    +   G+      LA  L  C  + S       GK++H  L +T  
Sbjct: 88  VASGQAAQAIAVFGDMVADGVFPDNVALAVALGACHGAGSWTARRNPGKKIHA-LIVTSG 146

Query: 84  KTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFD 143
             P  F+S  LI +Y +CG    +R+VFD +P ++  ++N ML  YA  G +  A  LF 
Sbjct: 147 IEPDVFVSTELIRVYGECGKLAVSRRVFDDMPSRSTITWNAMLHQYARHGKVDTAYELFL 206

Query: 144 NMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISC----NEFSFAGILTICVKLE 199
            M  RDVVSWNT++ GY  +G   E L  ++ +   S SC    N  + + IL  C    
Sbjct: 207 AMPRRDVVSWNTVMAGYCVAGRCREALGLFRQMVSPS-SCAVHPNVPTMSTILGACAGAG 265

Query: 200 ELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETD-ARDVLTWTTMV 258
            L+    VH  +       +  +   ++D Y KCG + +A ++F++    RD+ +WTT++
Sbjct: 266 CLETGIWVHAYIERNRMNDDGYLDRCLIDMYCKCGSIDNALQVFEKAPRKRDLFSWTTVI 325

Query: 259 SGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQH 318
            G A  G    A ++F+ M +               NG                I P+  
Sbjct: 326 CGLAMHGRATDALRMFDMMQD---------------NG----------------ICPDDV 354

Query: 319 TFSSCLCACASIVSLKHGKQV-----HGFLIRTNFRSNTIV--MSSLIDMYSKCGCLNDG 371
           T    L ACA      HG  V     + + +   FR    +     +ID+  + G L + 
Sbjct: 355 TLVGVLNACA------HGGLVDEGLGYFYSMEAKFRITPKIEHYGCMIDLLGRVGRLQEA 408

Query: 372 RQVFDLTDNKENSMLWNTMISALTQHG 398
             +        N+++W   +SA   HG
Sbjct: 409 YSMIRTMPMDPNTVIWGAFLSACKVHG 435



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 85/331 (25%), Positives = 144/331 (43%), Gaps = 52/331 (15%)

Query: 255 TTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIR 314
           T ++S YA LG  + A +LF+EMPE+  V  T +   +  +G   +A+ +F  M+   + 
Sbjct: 50  TALLSAYAALGSPDHARRLFDEMPEQGLVPRTAMARAHVASGQAAQAIAVFGDMVADGVF 109

Query: 315 PNQHTFSSCLCACASIVSL----KHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLND 370
           P+    +  L AC    S       GK++H  ++ +    +  V + LI +Y +CG L  
Sbjct: 110 PDNVALAVALGACHGAGSWTARRNPGKKIHALIVTSGIEPDVFVSTELIRVYGECGKLAV 169

Query: 371 GRQVFDLTDNKE----NSML--------------------------WNTMISALTQHGYD 400
            R+VFD   ++     N+ML                          WNT+++     G  
Sbjct: 170 SRRVFDDMPSRSTITWNAMLHQYARHGKVDTAYELFLAMPRRDVVSWNTVMAGYCVAGRC 229

Query: 401 EQAIRLFHDMVRSS---VKPDKITLAVILNACTHSGLVQEGL---TYFE-SMTHDLGIIP 453
            +A+ LF  MV  S   V P+  T++ IL AC  +G ++ G+    Y E +  +D G + 
Sbjct: 230 REALGLFRQMVSPSSCAVHPNVPTMSTILGACAGAGCLETGIWVHAYIERNRMNDDGYLD 289

Query: 454 NQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQL 513
                 CLI++  + G  D  +   EK P + D + W  +     +HG      ++ D +
Sbjct: 290 R-----CLIDMYCKCGSIDNALQVFEKAPRKRDLFSWTTVICGLAMHGRATDALRMFDMM 344

Query: 514 IDQN--PQSSATHGLLSSIYSALGKGRLVEK 542
            D    P      G+L    +A   G LV++
Sbjct: 345 QDNGICPDDVTLVGVL----NACAHGGLVDE 371


>gi|108862877|gb|ABA99065.2| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 491

 Score =  295 bits (754), Expect = 7e-77,   Method: Compositional matrix adjust.
 Identities = 154/476 (32%), Positives = 253/476 (53%), Gaps = 39/476 (8%)

Query: 116 VKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKV 175
           V++ F  N ++  Y+  G    AR +FD M ERDVVSWNT     A +  V EG      
Sbjct: 37  VEDTFVGNALIDAYSKNGGFSDARKVFDEMPERDVVSWNT-----AMAAMVREG------ 85

Query: 176 LRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGE 235
                        AG+  +  ++ E                  + V  ++I+D Y K GE
Sbjct: 86  -----------ELAGVRKLFDEMPE-----------------KDTVSWNTILDGYTKAGE 117

Query: 236 LSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRN 295
           +  A  LF     R+V++W+TMVSGY K GD+E A  +F++MP KN V+WT +++   + 
Sbjct: 118 VEAAFELFQRMPERNVVSWSTMVSGYCKKGDLEMARVIFDKMPSKNLVTWTIMVSACAQK 177

Query: 296 GLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVM 355
           GL  +A +LF +M    +  +     S L ACA   SL  GK++H ++ + N   +T V 
Sbjct: 178 GLVDEAGKLFAQMKEASVELDVAAVVSILAACAESGSLSLGKRIHRYVRKRNLGRSTHVC 237

Query: 356 SSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSV 415
           ++LIDM+ KCGC+N    VFD    +++S+ WN++I     HG+ ++A+ LF  M +   
Sbjct: 238 NALIDMFCKCGCVNRADYVFDTETVQKDSVSWNSIIGGFAMHGHGDKALELFAQMKQQGF 297

Query: 416 KPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLM 475
            PD +T+  +L+ACTH G V EG  +F +M  D GI+P  EH+ C+I+LL + G   + +
Sbjct: 298 NPDAVTMINVLSACTHMGFVDEGRRHFSNMERDYGIMPQIEHYGCMIDLLGRGGLIKEAV 357

Query: 476 NQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALG 535
           + ++ MP+E +  +W +L   CR+H N++     V++L    P ++  + +LS+IY+  G
Sbjct: 358 DLIKSMPWEPNEVIWGSLLSACRLHKNVEYAEIAVNELSKLQPSNAGNYAVLSNIYAEAG 417

Query: 536 KGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLA 591
           +   + K R  +     +K    SW+E+    H F+V D  H   D +  ++++L+
Sbjct: 418 QWSDMAKARMQMKGTGSQKTAGSSWVELNETFHEFTVGDRKHQDSDQISEMVDRLS 473



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 87/394 (22%), Positives = 171/394 (43%), Gaps = 55/394 (13%)

Query: 17  NNCLIQSFLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHL 76
            N LI ++      G  S+A    D + +R +      +A ++++   +   KL      
Sbjct: 43  GNALIDAYSK---NGGFSDARKVFDEMPERDVVSWNTAMAAMVREGELAGVRKL------ 93

Query: 77  HLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMK 136
                +     T   N ++  Y K G    A ++F ++P +N+ S++ M+SGY   G ++
Sbjct: 94  ---FDEMPEKDTVSWNTILDGYTKAGEVEAAFELFQRMPERNVVSWSTMVSGYCKKGDLE 150

Query: 137 HARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICV 196
            AR +FD M  +++V+W  M+   A+ G V+E  K +  ++  S+  +  +   IL  C 
Sbjct: 151 MARVIFDKMPSKNLVTWTIMVSACAQKGLVDEAGKLFAQMKEASVELDVAAVVSILAACA 210

Query: 197 KLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFD-ETDARDVLTWT 255
           +   L L +++H  V       +  + ++++D + KCG ++ A  +FD ET  +D ++W 
Sbjct: 211 ESGSLSLGKRIHRYVRKRNLGRSTHVCNALIDMFCKCGCVNRADYVFDTETVQKDSVSWN 270

Query: 256 TMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRP 315
           +++ G+A                                +G G KALELF +M      P
Sbjct: 271 SIIGGFA-------------------------------MHGHGDKALELFAQMKQQGFNP 299

Query: 316 NQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSS------LIDMYSKCGCLN 369
           +  T  + L AC  +  +  G++       +N   +  +M        +ID+  + G + 
Sbjct: 300 DAVTMINVLSACTHMGFVDEGRRHF-----SNMERDYGIMPQIEHYGCMIDLLGRGGLIK 354

Query: 370 DGRQVFDLTDNKENSMLWNTMISALTQHGYDEQA 403
           +   +      + N ++W +++SA   H   E A
Sbjct: 355 EAVDLIKSMPWEPNEVIWGSLLSACRLHKNVEYA 388


>gi|225438557|ref|XP_002276001.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g39530-like [Vitis vinifera]
          Length = 825

 Score =  295 bits (754), Expect = 7e-77,   Method: Compositional matrix adjust.
 Identities = 157/525 (29%), Positives = 279/525 (53%), Gaps = 65/525 (12%)

Query: 58  ILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVK 117
           +L  C   ++L+ G++VH +  +        F+ N LI MY K    +DA+K        
Sbjct: 337 VLTSCGSREALEQGRQVHAY-TIKANLESDEFVKNGLIDMYAKSNLLIDAKK-------- 387

Query: 118 NLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLR 177
                                  +FD MAE++V+S+N MI GY+    + E L+ +  +R
Sbjct: 388 -----------------------VFDVMAEQNVISYNAMIEGYSSQEKLSEALELFHEMR 424

Query: 178 RFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELS 237
                 +  +F  +L +   L  L+L++Q+HG ++  G   ++   S+++D Y+KC  + 
Sbjct: 425 VRLFPPSLLTFVSLLGVSASLFALELSKQIHGLIIKFGVSLDLFAGSALIDVYSKCSYVK 484

Query: 238 DARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGL 297
           DAR +                               F EM EK+ V W  +  GYT++  
Sbjct: 485 DARHV-------------------------------FEEMNEKDIVVWNAMFFGYTQHLE 513

Query: 298 GQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSS 357
            ++AL+L++ +   R +PN+ TF++ + A +++ SL+HG+Q H  L++        V ++
Sbjct: 514 NEEALKLYSTLQFSRQKPNEFTFAALITAASNLASLRHGQQFHNQLVKMGLDFCPFVTNA 573

Query: 358 LIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKP 417
           L+DMY+KCG + + R++F+ +    + + WN+MIS   QHG  E+A+ +F +M++  ++P
Sbjct: 574 LVDMYAKCGSIEEARKMFN-SSIWRDVVCWNSMISTHAQHGEAEEALGMFREMMKEGIQP 632

Query: 418 DKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQ 477
           + +T   +L+AC+H+G V++GL +F SM    GI P  EH+AC++ LL ++G   +    
Sbjct: 633 NYVTFVAVLSACSHAGRVEDGLNHFNSMP-GFGIKPGTEHYACVVSLLGRSGKLFEAKEF 691

Query: 478 LEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKG 537
           +EKMP E  + +W +L   CRI GN+++G+   +  I  +P+ S ++ LLS+I+++ G  
Sbjct: 692 IEKMPIEPAAIVWRSLLSACRIAGNVELGKYAAEMAISTDPKDSGSYILLSNIFASKGMW 751

Query: 538 RLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDV 582
             V+KVR  ++  +  KE   SWIE+ NKV+ F   D+ H   D+
Sbjct: 752 ADVKKVRDRMDSSEVVKEPGRSWIEVNNKVNVFIARDTTHREADI 796



 Score =  173 bits (439), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 96/303 (31%), Positives = 165/303 (54%), Gaps = 33/303 (10%)

Query: 137 HARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSIS-CNEFSFAGILTIC 195
           +AR +FD M  +++++W++M+  Y++ G  EE L  +  L+R S    NEF  A ++  C
Sbjct: 80  NARVVFDKMPHKNLITWSSMVSMYSQQGYSEEALMVFVDLQRKSGEHPNEFVLASVIRAC 139

Query: 196 VKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWT 255
            +L  ++   Q+HG V+ +GF  +V + +S++D Y                         
Sbjct: 140 TQLGVVEKGAQLHGFVVRSGFDQDVYVGTSLIDFY------------------------- 174

Query: 256 TMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRP 315
                 +K G++E A  +F+++ EK  V+WTT+IAGYT+ G    +LELF +M    + P
Sbjct: 175 ------SKNGNIEEARLVFDQLSEKTAVTWTTIIAGYTKCGRSAVSLELFAQMRETNVVP 228

Query: 316 NQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVF 375
           +++  SS L AC+ +  L+ GKQ+H +++R     +  V++ LID Y+KC  +  GR++F
Sbjct: 229 DRYVVSSVLSACSMLEFLEGGKQIHAYVLRRGTEMDVSVVNVLIDFYTKCNRVKAGRKLF 288

Query: 376 DLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLV 435
           D    K N + W TMIS   Q+ +D +A++LF +M R   KPD      +L +C     +
Sbjct: 289 DQMVVK-NIISWTTMISGYMQNSFDWEAMKLFGEMNRLGWKPDGFACTSVLTSCGSREAL 347

Query: 436 QEG 438
           ++G
Sbjct: 348 EQG 350



 Score =  162 bits (410), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 103/386 (26%), Positives = 188/386 (48%), Gaps = 38/386 (9%)

Query: 108 RKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVE 167
           R  FD+    +++   +++  Y+  G ++ AR +FD ++E+  V+W T+I GY K G   
Sbjct: 157 RSGFDQ----DVYVGTSLIDFYSKNGNIEEARLVFDQLSEKTAVTWTTIIAGYTKCGRSA 212

Query: 168 EGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIV 227
             L+ +  +R  ++  + +  + +L+ C  LE L+  +Q+H  VL  G   +V + + ++
Sbjct: 213 VSLELFAQMRETNVVPDRYVVSSVLSACSMLEFLEGGKQIHAYVLRRGTEMDVSVVNVLI 272

Query: 228 DAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTT 287
           D Y KC  +   R+LFD+   +++++WTTM+SGY                  +N   W  
Sbjct: 273 DFYTKCNRVKAGRKLFDQMVVKNIISWTTMISGYM-----------------QNSFDW-- 313

Query: 288 LIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTN 347
                       +A++LF  M  L  +P+    +S L +C S  +L+ G+QVH + I+ N
Sbjct: 314 ------------EAMKLFGEMNRLGWKPDGFACTSVLTSCGSREALEQGRQVHAYTIKAN 361

Query: 348 FRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLF 407
             S+  V + LIDMY+K   L D ++VFD+   ++N + +N MI   +      +A+ LF
Sbjct: 362 LESDEFVKNGLIDMYAKSNLLIDAKKVFDVM-AEQNVISYNAMIEGYSSQEKLSEALELF 420

Query: 408 HDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQ 467
           H+M R  + P  +   V L   + S    E       +    G+  +    + LI++ ++
Sbjct: 421 HEM-RVRLFPPSLLTFVSLLGVSASLFALELSKQIHGLIIKFGVSLDLFAGSALIDVYSK 479

Query: 468 AGCSDQLMNQLEKMPYEHDSYLWNAL 493
                   +  E+M  E D  +WNA+
Sbjct: 480 CSYVKDARHVFEEMN-EKDIVVWNAM 504



 Score =  121 bits (304), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 67/251 (26%), Positives = 132/251 (52%), Gaps = 31/251 (12%)

Query: 188 FAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETD 247
           FA +L + +    +   + +HGQ++V+G  S+  +++ +++  +K   + +AR +FD+  
Sbjct: 30  FANLLQLSISRNPIIHYKIIHGQIIVSGLQSDTFLANILINVCSKSDRVDNARVVFDKMP 89

Query: 248 ARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTR 307
            ++++TW++MVS Y++ G  E A  +F ++  K+                G+        
Sbjct: 90  HKNLITWSSMVSMYSQQGYSEEALMVFVDLQRKS----------------GE-------- 125

Query: 308 MMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGC 367
                  PN+   +S + AC  +  ++ G Q+HGF++R+ F  +  V +SLID YSK G 
Sbjct: 126 ------HPNEFVLASVIRACTQLGVVEKGAQLHGFVVRSGFDQDVYVGTSLIDFYSKNGN 179

Query: 368 LNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILN 427
           + + R VFD    K  ++ W T+I+  T+ G    ++ LF  M  ++V PD+  ++ +L+
Sbjct: 180 IEEARLVFDQLSEK-TAVTWTTIIAGYTKCGRSAVSLELFAQMRETNVVPDRYVVSSVLS 238

Query: 428 ACTHSGLVQEG 438
           AC+    ++ G
Sbjct: 239 ACSMLEFLEGG 249



 Score = 82.4 bits (202), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 58/217 (26%), Positives = 105/217 (48%), Gaps = 35/217 (16%)

Query: 308 MMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGC 367
           + I  +RP +  F++ L    S   + H K +HG +I +  +S+T + + LI++ SK   
Sbjct: 18  LQIPNLRPKRREFANLLQLSISRNPIIHYKIIHGQIIVSGLQSDTFLANILINVCSKSDR 77

Query: 368 LNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVK-PDKITLAVIL 426
           +++ R VFD   +K N + W++M+S  +Q GY E+A+ +F D+ R S + P++  LA ++
Sbjct: 78  VDNARVVFDKMPHK-NLITWSSMVSMYSQQGYSEEALMVFVDLQRKSGEHPNEFVLASVI 136

Query: 427 NACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHD 486
            ACT  G+V++G                                  QL   + +  ++ D
Sbjct: 137 RACTQLGVVEKGA---------------------------------QLHGFVVRSGFDQD 163

Query: 487 SYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSAT 523
            Y+  +L      +GNI+  R V DQL ++   +  T
Sbjct: 164 VYVGTSLIDFYSKNGNIEEARLVFDQLSEKTAVTWTT 200


>gi|297729323|ref|NP_001177025.1| Os12g0577900 [Oryza sativa Japonica Group]
 gi|255670427|dbj|BAH95753.1| Os12g0577900, partial [Oryza sativa Japonica Group]
          Length = 614

 Score =  295 bits (754), Expect = 7e-77,   Method: Compositional matrix adjust.
 Identities = 151/479 (31%), Positives = 252/479 (52%), Gaps = 39/479 (8%)

Query: 116 VKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKV 175
           V++ F  N ++  Y+  G    AR +FD M ERDVVSWNT +    + G           
Sbjct: 160 VEDTFVGNALIDAYSKNGGFSDARKVFDEMPERDVVSWNTAMAAMVREG----------- 208

Query: 176 LRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGE 235
                        AG+  +  ++ E                  + V  ++I+D Y K GE
Sbjct: 209 -----------ELAGVRKLFDEMPE-----------------KDTVSWNTILDGYTKAGE 240

Query: 236 LSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRN 295
           +  A  LF     R+V++W+TMVSGY K GD+E A  +F++MP KN V+WT +++   + 
Sbjct: 241 VEAAFELFQRMPERNVVSWSTMVSGYCKKGDLEMARVIFDKMPSKNLVTWTIMVSACAQK 300

Query: 296 GLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVM 355
           GL  +A +LF +M    +  +     S L ACA   SL  GK++H ++ + N   +T V 
Sbjct: 301 GLVDEAGKLFAQMKEASVELDVAAVVSILAACAESGSLSLGKRIHRYVRKRNLGRSTHVC 360

Query: 356 SSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSV 415
           ++LIDM+ KCGC+N    VFD    +++S+ WN++I     HG+ ++A+ LF  M +   
Sbjct: 361 NALIDMFCKCGCVNRADYVFDTETVQKDSVSWNSIIGGFAMHGHGDKALELFAQMKQQGF 420

Query: 416 KPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLM 475
            PD +T+  +L+ACTH G V EG  +F +M  D GI+P  EH+ C+I+LL + G   + +
Sbjct: 421 NPDAVTMINVLSACTHMGFVDEGRRHFSNMERDYGIMPQIEHYGCMIDLLGRGGLIKEAV 480

Query: 476 NQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALG 535
           + ++ MP+E +  +W +L   CR+H N++     V++L    P ++  + +LS+IY+  G
Sbjct: 481 DLIKSMPWEPNEVIWGSLLSACRLHKNVEYAEIAVNELSKLQPSNAGNYAVLSNIYAEAG 540

Query: 536 KGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQM 594
           +   + K R  +     +K    SW+E+    H F+V D  H   D +  ++++L+  +
Sbjct: 541 QWSDMAKARMQMKGTGSQKTAGSSWVELNETFHEFTVGDRKHQDSDQISEMVDRLSSHV 599



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 75/319 (23%), Positives = 146/319 (45%), Gaps = 43/319 (13%)

Query: 92  NHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVV 151
           N ++  Y K G    A ++F ++P +N+ S++ M+SGY   G ++ AR +FD M  +++V
Sbjct: 229 NTILDGYTKAGEVEAAFELFQRMPERNVVSWSTMVSGYCKKGDLEMARVIFDKMPSKNLV 288

Query: 152 SWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQV 211
           +W  M+   A+ G V+E  K +  ++  S+  +  +   IL  C +   L L +++H  V
Sbjct: 289 TWTIMVSACAQKGLVDEAGKLFAQMKEASVELDVAAVVSILAACAESGSLSLGKRIHRYV 348

Query: 212 LVTGFLSNVVISSSIVDAYAKCGELSDARRLFD-ETDARDVLTWTTMVSGYAKLGDMESA 270
                  +  + ++++D + KCG ++ A  +FD ET  +D ++W +++ G+A        
Sbjct: 349 RKRNLGRSTHVCNALIDMFCKCGCVNRADYVFDTETVQKDSVSWNSIIGGFAM------- 401

Query: 271 SKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASI 330
                                   +G G KALELF +M      P+  T  + L AC  +
Sbjct: 402 ------------------------HGHGDKALELFAQMKQQGFNPDAVTMINVLSACTHM 437

Query: 331 VSLKHGKQVHGFLIRTNFRSNTIVMSS------LIDMYSKCGCLNDGRQVFDLTDNKENS 384
             +  G++       +N   +  +M        +ID+  + G + +   +      + N 
Sbjct: 438 GFVDEGRRHF-----SNMERDYGIMPQIEHYGCMIDLLGRGGLIKEAVDLIKSMPWEPNE 492

Query: 385 MLWNTMISALTQHGYDEQA 403
           ++W +++SA   H   E A
Sbjct: 493 VIWGSLLSACRLHKNVEYA 511



 Score = 65.9 bits (159), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 48/154 (31%), Positives = 76/154 (49%), Gaps = 6/154 (3%)

Query: 30  KGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTF 89
           KG + EA      + +  + L    +  IL  CAES SL LGKR+H +++  +    +T 
Sbjct: 300 KGLVDEAGKLFAQMKEASVELDVAAVVSILAACAESGSLSLGKRIHRYVR-KRNLGRSTH 358

Query: 90  LSNHLISMYFKCGSDVDARKVFDKIPV-KNLFSYNNMLSGYANLGMMKHARNLFDNMAER 148
           + N LI M+ KCG    A  VFD   V K+  S+N+++ G+A  G    A  LF  M ++
Sbjct: 359 VCNALIDMFCKCGCVNRADYVFDTETVQKDSVSWNSIIGGFAMHGHGDKALELFAQMKQQ 418

Query: 149 ----DVVSWNTMIIGYAKSGAVEEGLKFYKVLRR 178
               D V+   ++      G V+EG + +  + R
Sbjct: 419 GFNPDAVTMINVLSACTHMGFVDEGRRHFSNMER 452


>gi|334185836|ref|NP_001190038.1| tetratricopeptide repeat-like family protein [Arabidopsis thaliana]
 gi|218546754|sp|P0C899.1|PP271_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g49142
 gi|332644983|gb|AEE78504.1| tetratricopeptide repeat-like family protein [Arabidopsis thaliana]
          Length = 686

 Score =  294 bits (753), Expect = 7e-77,   Method: Compositional matrix adjust.
 Identities = 174/563 (30%), Positives = 285/563 (50%), Gaps = 50/563 (8%)

Query: 78  LKLTQRKTP--TTFLSNHLISMYFKCGSDVDA-RKVFDKIPVKNLFSYNNM----LSGYA 130
           L+L Q K+P  T FL   ++  Y     D+   R V  +I +++L   +++    +  YA
Sbjct: 31  LELDQ-KSPQETVFLLGQVLDTY----PDIRTLRTVHSRIILEDLRCNSSLGVKLMRAYA 85

Query: 131 NLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAG 190
           +L  +  AR +FD + ER+V+  N MI  Y  +G   EG+K +  +   ++  + ++F  
Sbjct: 86  SLKDVASARKVFDEIPERNVIIINVMIRSYVNNGFYGEGVKVFGTMCGCNVRPDHYTFPC 145

Query: 191 ILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARD 250
           +L  C     + + R++HG     G  S + + + +V  Y KCG LS+AR + DE   RD
Sbjct: 146 VLKACSCSGTIVIGRKIHGSATKVGLSSTLFVGNGLVSMYGKCGFLSEARLVLDEMSRRD 205

Query: 251 VLTWTTMVSGYAK----------LGDMESAS---------------------------KL 273
           V++W ++V GYA+            +MES                              +
Sbjct: 206 VVSWNSLVVGYAQNQRFDDALEVCREMESVKISHDAGTMASLLPAVSNTTTENVMYVKDM 265

Query: 274 FNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSL 333
           F +M +K+ VSW  +I  Y +N +  +A+EL++RM      P+  + +S L AC    +L
Sbjct: 266 FFKMGKKSLVSWNVMIGVYMKNAMPVEAVELYSRMEADGFEPDAVSITSVLPACGDTSAL 325

Query: 334 KHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISA 393
             GK++HG++ R     N ++ ++LIDMY+KCGCL   R VF+   +++  + W  MISA
Sbjct: 326 SLGKKIHGYIERKKLIPNLLLENALIDMYAKCGCLEKARDVFENMKSRD-VVSWTAMISA 384

Query: 394 LTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIP 453
               G    A+ LF  +  S + PD I     L AC+H+GL++EG + F+ MT    I P
Sbjct: 385 YGFSGRGCDAVALFSKLQDSGLVPDSIAFVTTLAACSHAGLLEEGRSCFKLMTDHYKITP 444

Query: 454 NQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQL 513
             EH AC+++LL +AG   +    ++ M  E +  +W AL G CR+H + D+G    D+L
Sbjct: 445 RLEHLACMVDLLGRAGKVKEAYRFIQDMSMEPNERVWGALLGACRVHSDTDIGLLAADKL 504

Query: 514 IDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVS 573
               P+ S  + LLS+IY+  G+   V  +R ++  +  KK    S +E+   +H F V 
Sbjct: 505 FQLAPEQSGYYVLLSNIYAKAGRWEEVTNIRNIMKSKGLKKNPGASNVEVNRIIHTFLVG 564

Query: 574 DSLHPMRDVLYSVLEQLAGQMGE 596
           D  HP  D +Y  L+ L  +M E
Sbjct: 565 DRSHPQSDEIYRELDVLVKKMKE 587



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 94/420 (22%), Positives = 181/420 (43%), Gaps = 77/420 (18%)

Query: 18  NCLIQSFLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLH 77
           N +I+S+   ++ G   E +     +    +R    T   +L+ C+ S ++ +G+++H  
Sbjct: 109 NVMIRSY---VNNGFYGEGVKVFGTMCGCNVRPDHYTFPCVLKACSCSGTIVIGRKIHGS 165

Query: 78  LKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYA------- 130
                  + T F+ N L+SMY KCG   +AR V D++  +++ S+N+++ GYA       
Sbjct: 166 ATKVGLSS-TLFVGNGLVSMYGKCGFLSEARLVLDEMSRRDVVSWNSLVVGYAQNQRFDD 224

Query: 131 ---------------NLGMMK---------------HARNLFDNMAERDVVSWNTMIIGY 160
                          + G M                + +++F  M ++ +VSWN MI  Y
Sbjct: 225 ALEVCREMESVKISHDAGTMASLLPAVSNTTTENVMYVKDMFFKMGKKSLVSWNVMIGVY 284

Query: 161 AKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNV 220
            K+    E ++ Y  +       +  S   +L  C     L L +++HG +     + N+
Sbjct: 285 MKNAMPVEAVELYSRMEADGFEPDAVSITSVLPACGDTSALSLGKKIHGYIERKKLIPNL 344

Query: 221 VISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEK 280
           ++ ++++D YAKCG L  AR +F+   +RDV++WT M+S Y                   
Sbjct: 345 LLENALIDMYAKCGCLEKARDVFENMKSRDVVSWTAMISAY------------------- 385

Query: 281 NPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVH 340
                     G++  G G  A+ LF+++    + P+   F + L AC+    L+ G+   
Sbjct: 386 ----------GFS--GRGCDAVALFSKLQDSGLVPDSIAFVTTLAACSHAGLLEEGRSC- 432

Query: 341 GFLIRTNFRSNTIVMSSL---IDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQH 397
            F + T+    T  +  L   +D+  + G + +  +       + N  +W  ++ A   H
Sbjct: 433 -FKLMTDHYKITPRLEHLACMVDLLGRAGKVKEAYRFIQDMSMEPNERVWGALLGACRVH 491


>gi|357118286|ref|XP_003560887.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62260,
           mitochondrial-like [Brachypodium distachyon]
          Length = 676

 Score =  294 bits (753), Expect = 7e-77,   Method: Compositional matrix adjust.
 Identities = 185/620 (29%), Positives = 313/620 (50%), Gaps = 55/620 (8%)

Query: 15  LPNNCLI--QSFLSLISKGQLSEAISSLDLLAQRGIR--LPAETLAFILQQCAESKSLKL 70
           LP   ++   SFL+ +++G+  +  ++    A   +R  +   TL     +   S+ L  
Sbjct: 56  LPARSVVTWNSFLAALARGR--DVAAARAFFASMPVRDAVSWNTLLAAYSRSLNSEHLAA 113

Query: 71  GKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYA 130
            +R  L  ++ QR   T    N L+  Y + G  V+A K+FD++P +N+ S+N M++G+ 
Sbjct: 114 ARR--LFDEMPQRDAVTW---NTLLGAYVRRGLMVEAEKLFDEMPQRNVASWNTMVTGFF 168

Query: 131 NLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFY-KVLRRFSISCNEFSFA 189
           + G +  A ++FD M  +D  S  T++ G+ K+G + E  +   K LR   +     ++ 
Sbjct: 169 SAGQVNKALDMFDAMPVKDSASLGTLVSGFIKNGRLHEAEELLTKRLRVTDMDEAVDAYN 228

Query: 190 GILTICVKLEELKLTRQV-----HGQVLVTG-----FLSNVVISSSIVDAYAKCGELSDA 239
            ++    ++  +   R++      GQ          F  NVV  +S++  Y + G++  A
Sbjct: 229 TLIAAYGQVGRVSDARRLFDMIPRGQYQCKTNNMRVFARNVVSWNSMMTCYIRTGDVCSA 288

Query: 240 RRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMP--------------------- 278
           R +F+E   +D+++W TM++GY K+ DME A KLF EMP                     
Sbjct: 289 REIFNEMPDKDLVSWNTMIAGYTKVSDMEEAEKLFWEMPDPDIVSWNLIIRGFTQKGDVE 348

Query: 279 ----------EKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACA 328
                     E+  +SW T+I+GY +NG    A+ELFT+M+     P++HTFSS L ACA
Sbjct: 349 HARGFFDRMPERGTISWNTMISGYEQNGHYDGAIELFTKMLEAGGTPDRHTFSSVLAACA 408

Query: 329 SIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWN 388
           S+  L+ G Q+H  LI  +F  +T   ++L+ MYS+ G L D   +F     K+  + WN
Sbjct: 409 SLPMLRLGAQLHQ-LIEKSFLPDTATSNALMTMYSRGGALTDAEAIFKQMPQKD-LVSWN 466

Query: 389 TMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHD 448
            +I     HG   +A++LF DM  + V P  IT   +L+AC ++GLV EG   F++M H+
Sbjct: 467 ALIGGYEHHGCATEALQLFEDMRSARVMPTHITFISLLSACGNAGLVSEGWMVFDTMIHE 526

Query: 449 LGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRK 508
             I    EH+A L+ L+ + G  D  +  +  MP   D  +W A  G C    N  +   
Sbjct: 527 YSIAARIEHYAALVNLIGRHGQLDDALEVINSMPIAPDRSVWGAFLGACTAKKNELLAHM 586

Query: 509 VVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVH 568
               L   +P+SSA + L+ ++++  G+      VR+ + ++   K    SWI++ +KVH
Sbjct: 587 AAKALSKIDPESSAPYVLIHNLHAHEGRWGSASVVREEMEQQGIHKHPGYSWIDLHDKVH 646

Query: 569 AFSVSDSLHPMRDVLYSVLE 588
            F   D+ HP+   ++SVL+
Sbjct: 647 VFISGDTSHPLTQEIFSVLK 666



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 108/466 (23%), Positives = 215/466 (46%), Gaps = 69/466 (14%)

Query: 111 FDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGL 170
           FD +P +++ ++N+ L+  A    +  AR  F +M  RD VSWNT++  Y++S       
Sbjct: 53  FDALPARSVVTWNSFLAALARGRDVAAARAFFASMPVRDAVSWNTLLAAYSRS------- 105

Query: 171 KFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAY 230
                                    +  E L   R++  ++       + V  ++++ AY
Sbjct: 106 -------------------------LNSEHLAAARRLFDEMP----QRDAVTWNTLLGAY 136

Query: 231 AKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIA 290
            + G + +A +LFDE   R+V +W TMV+G+   G +  A  +F+ MP K+  S  TL++
Sbjct: 137 VRRGLMVEAEKLFDEMPQRNVASWNTMVTGFFSAGQVNKALDMFDAMPVKDSASLGTLVS 196

Query: 291 GYTRNGLGQKALELFT-RMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIR---- 345
           G+ +NG   +A EL T R+ +  +      +++ + A   +  +   +++   + R    
Sbjct: 197 GFIKNGRLHEAEELLTKRLRVTDMDEAVDAYNTLIAAYGQVGRVSDARRLFDMIPRGQYQ 256

Query: 346 --TN----FRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGY 399
             TN    F  N +  +S++  Y + G +   R++F+   +K+  + WNTMI+  T+   
Sbjct: 257 CKTNNMRVFARNVVSWNSMMTCYIRTGDVCSAREIFNEMPDKD-LVSWNTMIAGYTKVSD 315

Query: 400 DEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHA 459
            E+A +LF +M      PD ++  +I+   T  G V+    +F+ M     I  N     
Sbjct: 316 MEEAEKLFWEM----PDPDIVSWNLIIRGFTQKGDVEHARGFFDRMPERGTISWN----- 366

Query: 460 CLIELLAQAGCSD---QLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQ 516
            +I    Q G  D   +L  ++ +     D + ++++   C     + +G + + QLI++
Sbjct: 367 TMISGYEQNGHYDGAIELFTKMLEAGGTPDRHTFSSVLAACASLPMLRLGAQ-LHQLIEK 425

Query: 517 N--PQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISW 560
           +  P ++ ++ L+ ++YS  G     E +      +Q  ++  +SW
Sbjct: 426 SFLPDTATSNALM-TMYSRGGALTDAEAIF-----KQMPQKDLVSW 465


>gi|147791533|emb|CAN68456.1| hypothetical protein VITISV_025676 [Vitis vinifera]
          Length = 768

 Score =  294 bits (753), Expect = 7e-77,   Method: Compositional matrix adjust.
 Identities = 168/554 (30%), Positives = 282/554 (50%), Gaps = 39/554 (7%)

Query: 46  RGIRLPAETLAFILQQCAESKSLKL--GKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGS 103
           R   +  +T  F+LQ+C   + LK   GK V L L  ++R+     L+  L++ Y + GS
Sbjct: 248 RNAHMNTQTFYFLLQKCGSLEKLKQIHGKAVTLGLLCSKRQ----HLACKLLNTYTQLGS 303

Query: 104 DVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKS 163
            VDA+KV                               F+++   D+VSW  +I  Y  +
Sbjct: 304 PVDAQKV-------------------------------FNHIQNPDIVSWTCLISLYLHT 332

Query: 164 GAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVIS 223
               +    +  L    +  + F   G ++ C   ++L   R VHG V      S+ ++ 
Sbjct: 333 SQPCKAFSIFSHLFHSGLRPDSFCVVGAVSACGHRKDLSNGRIVHGMVFRFELGSDPIVG 392

Query: 224 SSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPV 283
           ++++D Y++ G +  A  +F   + +DV +WT++++G+ K  D+E+A ++F+EMP +N V
Sbjct: 393 NALIDMYSRSGAIEVACSVFKTMEIKDVSSWTSLLNGFIKCNDIEAARRIFDEMPMRNSV 452

Query: 284 SWTTLIAGYTRNGLGQKALELFTRMMIL-RIRPNQHTFSSCLCACASIVSLKHGKQVHGF 342
           SWT +I GY +  +    LELF  M    +  P   T  + L  CA I +   G  VHG+
Sbjct: 453 SWTAMITGYVQGEVPIPGLELFQEMRAEGKDWPTVITIVAVLSGCADIGAFDLGSSVHGY 512

Query: 343 LIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQ 402
           + +TN   +  V ++L+DMY+K G L    ++F     K +   W TMIS L  HG    
Sbjct: 513 VNKTNLDLDVTVNNALMDMYAKSGALVLALKIFQEMP-KRDVFSWTTMISGLALHGKGTH 571

Query: 403 AIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLI 462
           A+  F DM +S   P+++TL  +L+AC+H+GLV EG + F+ M    GI P  +H+ C++
Sbjct: 572 ALEAFSDMSKSGXXPNEVTLLSVLSACSHAGLVVEGRSLFQKMVQCHGIKPKIQHYGCMV 631

Query: 463 ELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSA 522
           +LL +AG   +    +E MP + DS +W +L   C +HGN+ +       +I+  P    
Sbjct: 632 DLLGRAGLLREAKELIEHMPIKPDSVIWRSLLSACLVHGNLALAEMAGKMIIELEPDDDG 691

Query: 523 THGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDV 582
            + LL +IY +  +     K R+ + +R+ KK+   SW+E+   VH F   D++H +R  
Sbjct: 692 VYILLWNIYCSASRWEDALKARKAMRDRRVKKKPGCSWVEVNGVVHEFLAEDAVHCIRAD 751

Query: 583 LYSVLEQLAGQMGE 596
           +Y+VLE +  QM +
Sbjct: 752 VYTVLEAITEQMKD 765



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 99/384 (25%), Positives = 171/384 (44%), Gaps = 39/384 (10%)

Query: 18  NCLIQSFLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVH-L 76
            CLI  +L      Q  +A S    L   G+R  +  +   +  C   K L  G+ VH +
Sbjct: 323 TCLISLYLH---TSQPCKAFSIFSHLFHSGLRPDSFCVVGAVSACGHRKDLSNGRIVHGM 379

Query: 77  HLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMK 136
             +      P   + N LI MY + G+   A  VF  + +K++ S+ ++L+G+     ++
Sbjct: 380 VFRFELGSDP--IVGNALIDMYSRSGAIEVACSVFKTMEIKDVSSWTSLLNGFIKCNDIE 437

Query: 137 HARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISC-NEFSFAGILTIC 195
            AR +FD M  R+ VSW  MI GY +      GL+ ++ +R          +   +L+ C
Sbjct: 438 AARRIFDEMPMRNSVSWTAMITGYVQGEVPIPGLELFQEMRAEGKDWPTVITIVAVLSGC 497

Query: 196 VKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWT 255
             +    L   VHG V  T    +V ++++++D YAK G L  A ++F E   RDV +WT
Sbjct: 498 ADIGAFDLGSSVHGYVNKTNLDLDVTVNNALMDMYAKSGALVLALKIFQEMPKRDVFSWT 557

Query: 256 TMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRP 315
           TM+SG A                                +G G  ALE F+ M      P
Sbjct: 558 TMISGLA-------------------------------LHGKGTHALEAFSDMSKSGXXP 586

Query: 316 NQHTFSSCLCACASIVSLKHGKQVHGFLIRTN-FRSNTIVMSSLIDMYSKCGCLNDGRQV 374
           N+ T  S L AC+    +  G+ +   +++ +  +        ++D+  + G L + +++
Sbjct: 587 NEVTLLSVLSACSHAGLVVEGRSLFQKMVQCHGIKPKIQHYGCMVDLLGRAGLLREAKEL 646

Query: 375 FDLTDNKENSMLWNTMISALTQHG 398
            +    K +S++W +++SA   HG
Sbjct: 647 IEHMPIKPDSVIWRSLLSACLVHG 670


>gi|113205417|gb|AAU90328.2| Pentatricopeptide repeat domain containing protein, putative
           [Solanum demissum]
          Length = 819

 Score =  294 bits (753), Expect = 7e-77,   Method: Compositional matrix adjust.
 Identities = 159/488 (32%), Positives = 262/488 (53%), Gaps = 33/488 (6%)

Query: 116 VKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKV 175
           V ++F  N +L  Y+    +  A+NLFD M E D VS+N +I GYA +G  E+    +K 
Sbjct: 276 VWDIFVANALLDFYSKHDYIDLAKNLFDEMPELDGVSYNIIITGYAWNGQYEKSFDLFKR 335

Query: 176 LRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGE 235
           L+  S     F FA +L++      L + RQ H Q +VT  +S V + +++VD YAKC +
Sbjct: 336 LQGTSFDRKNFPFATMLSVAAIELNLSMGRQTHAQAVVTTAVSEVQVGNALVDMYAKCEK 395

Query: 236 LSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRN 295
             D                               A+++F  +  +N V WT +I+ Y + 
Sbjct: 396 FED-------------------------------ANRIFANLAYRNSVPWTAIISIYVQK 424

Query: 296 GLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVM 355
           G  ++AL++F  M    +  +Q TF+S L A A++ S+  GKQ+H  +IR    S+    
Sbjct: 425 GFHEEALKMFKEMNRENVHGDQATFASTLKASANLASVSLGKQLHSSVIRLGLLSSVFSG 484

Query: 356 SSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSV 415
           S L+DMY+ CG + D  +VF    ++ N + WN +ISA +Q+G  E     F DM+ S +
Sbjct: 485 SVLVDMYANCGSMKDAIEVFKEMPDR-NIVCWNALISAYSQNGDAEATFSSFADMIESGL 543

Query: 416 KPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLM 475
            PD ++   +L AC+H GLV++ L YF SMT    + P ++H+A +I++L ++G  ++  
Sbjct: 544 YPDSVSFLSVLTACSHRGLVEKALWYFNSMTQVYKLDPRRKHYATMIDVLCRSGRFNEAE 603

Query: 476 NQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNP-QSSATHGLLSSIYSAL 534
           N + +MP+E D  +W+++   CRIH N D+ +K  DQL   +  + +A +  +S+IY+  
Sbjct: 604 NLISEMPFEPDEVMWSSVLNSCRIHKNQDLAKKAADQLFKMDALRDAAAYVNMSNIYAEA 663

Query: 535 GKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQM 594
           GK     KV++ + ER  KK  A SW+EI+++VH F+ +D  HP  + +   +  L   M
Sbjct: 664 GKWENAAKVKKAMRERGVKKVTAYSWVEIDHRVHVFTANDRTHPQTEQIRRKINSLVELM 723

Query: 595 GEDAPSLD 602
            ++    D
Sbjct: 724 DKEGYKPD 731



 Score =  145 bits (365), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 122/518 (23%), Positives = 227/518 (43%), Gaps = 70/518 (13%)

Query: 32  QLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLS 91
           Q  EA +    + + G++    T A +L    ++ +LK   ++H H+ +    + +  + 
Sbjct: 123 QPKEAFNLYTEMCRSGVKPDHITFATLLSGFDDTTTLKEVLQIHSHI-IRFGFSASLIVF 181

Query: 92  NHLISMYFK-CGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDV 150
           N L+  Y K C  D+ A ++F ++P K+  S+N M++GY                     
Sbjct: 182 NSLVDSYCKTCCLDI-ASQLFSEMPTKDSVSFNVMITGY--------------------- 219

Query: 151 VSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQ 210
                      K G  EE LK +  +R      + F+FA +L + V  E++   +Q+HG 
Sbjct: 220 ----------TKYGFREEALKLFMQMRNMDFQPSGFTFAAMLGMSVGSEDVIFGQQIHGL 269

Query: 211 VLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESA 270
            + T ++ ++ ++++++D Y+K   +  A+ LFDE    D +++  +++GYA        
Sbjct: 270 AIKTSYVWDIFVANALLDFYSKHDYIDLAKNLFDEMPELDGVSYNIIITGYA-------- 321

Query: 271 SKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASI 330
                         W         NG  +K+ +LF R+           F++ L   A  
Sbjct: 322 --------------W---------NGQYEKSFDLFKRLQGTSFDRKNFPFATMLSVAAIE 358

Query: 331 VSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTM 390
           ++L  G+Q H   + T   S   V ++L+DMY+KC    D  ++F     + NS+ W  +
Sbjct: 359 LNLSMGRQTHAQAVVTTAVSEVQVGNALVDMYAKCEKFEDANRIFANLAYR-NSVPWTAI 417

Query: 391 ISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLG 450
           IS   Q G+ E+A+++F +M R +V  D+ T A  L A  +   V  G     S+   LG
Sbjct: 418 ISIYVQKGFHEEALKMFKEMNRENVHGDQATFASTLKASANLASVSLGKQLHSSVIR-LG 476

Query: 451 IIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVV 510
           ++ +    + L+++ A  G     +   ++MP + +   WNAL      +G+ +      
Sbjct: 477 LLSSVFSGSVLVDMYANCGSMKDAIEVFKEMP-DRNIVCWNALISAYSQNGDAEATFSSF 535

Query: 511 DQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLIN 548
             +I+      +   L  S+ +A     LVEK     N
Sbjct: 536 ADMIESGLYPDSVSFL--SVLTACSHRGLVEKALWYFN 571



 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 85/321 (26%), Positives = 159/321 (49%), Gaps = 32/321 (9%)

Query: 107 ARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAV 166
           AR++FD++P +N  S N M+SGY     +  AR LF++M  R+ VSW  MI GY+++   
Sbjct: 65  ARQLFDEMPYRNTSSVNMMVSGYVKSRNLFRARELFESMFSRNEVSWTIMIGGYSQNNQP 124

Query: 167 EEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSI 226
           +E    Y  + R  +  +  +FA +L+       LK   Q+H  ++  GF +++++ +S+
Sbjct: 125 KEAFNLYTEMCRSGVKPDHITFATLLSGFDDTTTLKEVLQIHSHIIRFGFSASLIVFNSL 184

Query: 227 VDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWT 286
           VD+Y K   L  A +LF E   +D +++  M++GY K G                     
Sbjct: 185 VDSYCKTCCLDIASQLFSEMPTKDSVSFNVMITGYTKYG--------------------- 223

Query: 287 TLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRT 346
                       ++AL+LF +M  +  +P+  TF++ L        +  G+Q+HG  I+T
Sbjct: 224 ----------FREEALKLFMQMRNMDFQPSGFTFAAMLGMSVGSEDVIFGQQIHGLAIKT 273

Query: 347 NFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRL 406
           ++  +  V ++L+D YSK   ++  + +FD    + + + +N +I+    +G  E++  L
Sbjct: 274 SYVWDIFVANALLDFYSKHDYIDLAKNLFDEMP-ELDGVSYNIIITGYAWNGQYEKSFDL 332

Query: 407 FHDMVRSSVKPDKITLAVILN 427
           F  +  +S        A +L+
Sbjct: 333 FKRLQGTSFDRKNFPFATMLS 353



 Score =  135 bits (339), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 88/307 (28%), Positives = 144/307 (46%), Gaps = 34/307 (11%)

Query: 207 VHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGD 266
           V  +++ TGF   +   +  +    +  +++ AR+LFDE   R+  +   MVSGY K  +
Sbjct: 33  VDARIVKTGFDPEISRFNFKLKDLVRANQIAKARQLFDEMPYRNTSSVNMMVSGYVKSRN 92

Query: 267 MESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCA 326
           +  A +LF  M  +N VSWT +I GY++N   ++A  L+T M    ++P+  TF++ L  
Sbjct: 93  LFRARELFESMFSRNEVSWTIMIGGYSQNNQPKEAFNLYTEMCRSGVKPDHITFATLLSG 152

Query: 327 CASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSML 386
                +LK   Q+H  +IR  F ++ IV +SL+D Y K  CL+   Q+F     K+ S+ 
Sbjct: 153 FDDTTTLKEVLQIHSHIIRFGFSASLIVFNSLVDSYCKTCCLDIASQLFSEMPTKD-SVS 211

Query: 387 WNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMT 446
           +N MI+  T++G+ E+A++LF  M     +P   T A +L     S  V      F    
Sbjct: 212 FNVMITGYTKYGFREEALKLFMQMRNMDFQPSGFTFAAMLGMSVGSEDV-----IFGQQI 266

Query: 447 HDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMG 506
           H L I                            K  Y  D ++ NAL      H  ID+ 
Sbjct: 267 HGLAI----------------------------KTSYVWDIFVANALLDFYSKHDYIDLA 298

Query: 507 RKVVDQL 513
           + + D++
Sbjct: 299 KNLFDEM 305



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 73/294 (24%), Positives = 131/294 (44%), Gaps = 40/294 (13%)

Query: 39  SLDLLAQ-RGIRLPAETLAF--ILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLI 95
           S DL  + +G     +   F  +L   A   +L +G++ H    +T   +    + N L+
Sbjct: 329 SFDLFKRLQGTSFDRKNFPFATMLSVAAIELNLSMGRQTHAQAVVTTAVSEVQ-VGNALV 387

Query: 96  SMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNT 155
            MY KC    DA ++F  +  +N   +  ++S Y   G                      
Sbjct: 388 DMYAKCEKFEDANRIFANLAYRNSVPWTAIISIYVQKGFH-------------------- 427

Query: 156 MIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTG 215
                      EE LK +K + R ++  ++ +FA  L     L  + L +Q+H  V+  G
Sbjct: 428 -----------EEALKMFKEMNRENVHGDQATFASTLKASANLASVSLGKQLHSSVIRLG 476

Query: 216 FLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFN 275
            LS+V   S +VD YA CG + DA  +F E   R+++ W  ++S Y++ GD E+    F 
Sbjct: 477 LLSSVFSGSVLVDMYANCGSMKDAIEVFKEMPDRNIVCWNALISAYSQNGDAEATFSSFA 536

Query: 276 EMPEK----NPVSWTTLIAGYTRNGLGQKALELFTRM-MILRIRPNQHTFSSCL 324
           +M E     + VS+ +++   +  GL +KAL  F  M  + ++ P +  +++ +
Sbjct: 537 DMIESGLYPDSVSFLSVLTACSHRGLVEKALWYFNSMTQVYKLDPRRKHYATMI 590



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 66/281 (23%), Positives = 131/281 (46%), Gaps = 22/281 (7%)

Query: 12  RKNLPNNCLIQSFLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLG 71
           R ++P   +I  +   + KG   EA+     + +  +     T A  L+  A   S+ LG
Sbjct: 409 RNSVPWTAIISIY---VQKGFHEEALKMFKEMNRENVHGDQATFASTLKASANLASVSLG 465

Query: 72  KRVH---LHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSG 128
           K++H   + L L      + F  + L+ MY  CGS  DA +VF ++P +N+  +N ++S 
Sbjct: 466 KQLHSSVIRLGLLS----SVFSGSVLVDMYANCGSMKDAIEVFKEMPDRNIVCWNALISA 521

Query: 129 YANLGMMKHARNLFDNMAER----DVVSWNTMIIGYAKSGAVEEGLKFYKVLRR-FSISC 183
           Y+  G  +   + F +M E     D VS+ +++   +  G VE+ L ++  + + + +  
Sbjct: 522 YSQNGDAEATFSSFADMIESGLYPDSVSFLSVLTACSHRGLVEKALWYFNSMTQVYKLDP 581

Query: 184 NEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDA--YAKCGELSD--A 239
               +A ++ +  +         +  ++    F  + V+ SS++++    K  +L+   A
Sbjct: 582 RRKHYATMIDVLCRSGRFNEAENLISEM---PFEPDEVMWSSVLNSCRIHKNQDLAKKAA 638

Query: 240 RRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEK 280
            +LF     RD   +  M + YA+ G  E+A+K+   M E+
Sbjct: 639 DQLFKMDALRDAAAYVNMSNIYAEAGKWENAAKVKKAMRER 679


>gi|115464255|ref|NP_001055727.1| Os05g0455900 [Oryza sativa Japonica Group]
 gi|53749358|gb|AAU90217.1| unknow protein [Oryza sativa Japonica Group]
 gi|113579278|dbj|BAF17641.1| Os05g0455900 [Oryza sativa Japonica Group]
 gi|222631826|gb|EEE63958.1| hypothetical protein OsJ_18783 [Oryza sativa Japonica Group]
          Length = 874

 Score =  294 bits (753), Expect = 7e-77,   Method: Compositional matrix adjust.
 Identities = 190/662 (28%), Positives = 321/662 (48%), Gaps = 107/662 (16%)

Query: 9   GINRKNLPNNCLIQSFLSLISKGQL-SEAISSLDLLAQRGIRLPAETLAFILQQCAESKS 67
           G+ +KN+       S L+  +  Q+ SE ++    +   GI     T A +L   A   +
Sbjct: 160 GMPKKNVVT---WTSLLTGCAHAQMHSEVMALFFRMRAEGIWPNPFTFASVLSAVASQGA 216

Query: 68  LKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLS 127
           L LG+RVH                    S+ F C S V              F  N++++
Sbjct: 217 LDLGQRVHAQ------------------SVKFGCRSSV--------------FVCNSLMN 244

Query: 128 GYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFS 187
            YA  G+++ A+++F+ M  RD+VSWNT++ G   +    E L+ +   R       + +
Sbjct: 245 MYAKCGLVEDAKSVFNWMETRDMVSWNTLMAGLQLNECELEALQLFHESRATMGKMTQST 304

Query: 188 FAGILTICVKLEELKLTRQV------HGQVLVTGFLS----------------------- 218
           +A ++ +C  L++L L RQ+      HG  L    ++                       
Sbjct: 305 YATVIKLCANLKQLALARQLHSCVLKHGFHLTGNVMTALADAYSKCGELADALNIFSMTT 364

Query: 219 ---NVVISSSIVDAYAKCGELSDARRLFDETDARDVL----------------------- 252
              NVV  ++I+    + G++  A  LF       V+                       
Sbjct: 365 GSRNVVSWTAIISGCIQNGDIPLAVVLFSRMREDRVMPNEFTYSAMLKASLSILPPQIHA 424

Query: 253 ------------TWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQK 300
                         T +++ Y+K G  E A  +F  + +K+ V+W+ +++ + + G  + 
Sbjct: 425 QVIKTNYQHIPFVGTALLASYSKFGSTEDALSIFKMIEQKDVVAWSAMLSCHAQAGDCEG 484

Query: 301 ALELFTRMMILRIRPNQHTFSSCL--CACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSL 358
           A  LF +M I  I+PN+ T SS +  CAC S   +  G+Q H   I+  +     V S+L
Sbjct: 485 ATYLFNKMAIQGIKPNEFTISSVIDACACPS-AGVDQGRQFHAISIKYRYHDAICVSSAL 543

Query: 359 IDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPD 418
           + MYS+ G ++  + VF+   +++  + WN+MIS   QHGY  +AI  F  M  S ++ D
Sbjct: 544 VSMYSRKGNIDSAQIVFERQTDRD-LVSWNSMISGYAQHGYSMKAIETFRQMEASGIQMD 602

Query: 419 KITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQL 478
            +T   ++  CTH+GLV EG  YF+SM  D  I P  EH+AC+++L ++AG  D+ M+ +
Sbjct: 603 GVTFLAVIMGCTHNGLVVEGQQYFDSMVRDHKINPTMEHYACMVDLYSRAGKLDETMSLI 662

Query: 479 EKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGR 538
             MP+   + +W  L G CR+H N+++G+   D+L+   P  S+T+ LLS+IY+A GK +
Sbjct: 663 RDMPFPAGAMVWRTLLGACRVHKNVELGKFSADKLLSLEPHDSSTYVLLSNIYAAAGKWK 722

Query: 539 LVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQMGEDA 598
             ++VR+L++ R+ KKE   SWI+I+NKVH+F   D  HPM D +Y  L+ +  ++ +D 
Sbjct: 723 ERDEVRKLMDYRKVKKEAGCSWIQIKNKVHSFIAFDKSHPMSDQIYKKLKVIITRLKQDG 782

Query: 599 PS 600
            S
Sbjct: 783 YS 784



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 113/469 (24%), Positives = 205/469 (43%), Gaps = 78/469 (16%)

Query: 30  KGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVH-LHLKLTQRKTPTT 88
           +G + E +    +  + G+ + + TL+ +L+ C       LG+++H L +K    +   +
Sbjct: 77  RGMVLEVLDQFSVARRGGVLVDSATLSCVLKACRSVPDRVLGEQLHCLCVKCGHDRGEVS 136

Query: 89  FLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAER 148
                L+ MY KCGS  +  +VF+ +P KN                              
Sbjct: 137 -AGTSLVDMYMKCGSVCEGIEVFEGMPKKN------------------------------ 165

Query: 149 DVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVH 208
            VV+W +++ G A +    E +  +  +R   I  N F+FA +L+       L L ++VH
Sbjct: 166 -VVTWTSLLTGCAHAQMHSEVMALFFRMRAEGIWPNPFTFASVLSAVASQGALDLGQRVH 224

Query: 209 GQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDME 268
            Q +  G  S+V + +S+++ YAKCG + DA+ +F+  + RD+++W              
Sbjct: 225 AQSVKFGCRSSVFVCNSLMNMYAKCGLVEDAKSVFNWMETRDMVSW-------------- 270

Query: 269 SASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACA 328
                             TL+AG   N    +AL+LF        +  Q T+++ +  CA
Sbjct: 271 -----------------NTLMAGLQLNECELEALQLFHESRATMGKMTQSTYATVIKLCA 313

Query: 329 SIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWN 388
           ++  L   +Q+H  +++  F     VM++L D YSKCG L D   +F +T    N + W 
Sbjct: 314 NLKQLALARQLHSCVLKHGFHLTGNVMTALADAYSKCGELADALNIFSMTTGSRNVVSWT 373

Query: 389 TMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHD 448
            +IS   Q+G    A+ LF  M    V P++          T+S +++  L+      H 
Sbjct: 374 AIISGCIQNGDIPLAVVLFSRMREDRVMPNEF---------TYSAMLKASLSILPPQIHA 424

Query: 449 LGIIPNQEH----HACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNAL 493
             I  N +H       L+   ++ G ++  ++ + KM  + D   W+A+
Sbjct: 425 QVIKTNYQHIPFVGTALLASYSKFGSTEDALS-IFKMIEQKDVVAWSAM 472


>gi|297826975|ref|XP_002881370.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297327209|gb|EFH57629.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 627

 Score =  294 bits (753), Expect = 7e-77,   Method: Compositional matrix adjust.
 Identities = 164/538 (30%), Positives = 296/538 (55%), Gaps = 48/538 (8%)

Query: 94  LISMYFKCGSDVDARKVFDKIPV-KNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVS 152
           +I+ Y K G+  +AR++FD++   KN+ ++  M+SGY     +  A  LF  M ER++VS
Sbjct: 83  VITGYIKLGNMREARELFDRVDSRKNVVTWTAMVSGYLRSKQLSVAETLFQEMPERNIVS 142

Query: 153 WNTMIIGYAKSGAVEEGLKFY-KVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQV 211
           WNTMI GYA+SG +++ L+ + ++  R ++S N    A +    +  E + L  ++    
Sbjct: 143 WNTMIDGYAQSGRIDKALELFDEMPERNTVSWNTMIKALVQRGRID-EAMNLFERMP--- 198

Query: 212 LVTGFLSNVVISSSIVDAYAKCGELSDARRLFD------------------------ETD 247
                + +V+  +++VD  AK G++ +ARRLFD                        E D
Sbjct: 199 -----IKDVISWTAMVDGLAKNGKVDEARRLFDCMPERNIISWNAMITGYTYNNRIDEAD 253

Query: 248 -------ARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQK 300
                   RD  +W TM++G+ +  ++  A  LF+ MP+KN +SWT +I GY  N   ++
Sbjct: 254 QLFQVMPERDFASWNTMITGFIRNREINRACGLFDRMPQKNVISWTAMITGYVENKENEE 313

Query: 301 ALELFTRMMILR---IRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSS 357
           AL++F++M  LR   ++PN  T+ S L AC+ +  L  G+Q+H  + ++  + N +V S+
Sbjct: 314 ALKVFSKM--LRDGCVKPNVGTYVSILSACSDLAGLVEGQQIHQLISKSVHQENEVVTSA 371

Query: 358 LIDMYSKCGCLNDGRQVFDLTDNKENSML-WNTMISALTQHGYDEQAIRLFHDMVRSSVK 416
           LI+MYSK G L   R++FD     +  ++ WN+MI+    HG+ ++AI ++  M +   K
Sbjct: 372 LINMYSKSGELIAARKMFDNGLVCQRDLISWNSMIAVYAHHGHGKEAIEMYDQMRKHGFK 431

Query: 417 PDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMN 476
           P ++T   +L AC+H+GLV++G+ +F+ +  D  +   +EH+ CL++L  +AG    ++N
Sbjct: 432 PSEVTYLNLLFACSHAGLVEKGMEFFKELVRDESLPLREEHYTCLVDLCGRAGRLKDVLN 491

Query: 477 QLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGK 536
            +           + A+   C +H  + + ++VV ++++     + T+ ++S+IY+A GK
Sbjct: 492 FINCDDARLSRSFYGAILSACNVHSEVSIAKEVVKKVLETGSDDAGTYVMMSNIYAASGK 551

Query: 537 GRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQM 594
                ++R  + E+  KK+   SW++I N+ H F V D  HP  + L S++  L  +M
Sbjct: 552 REKAAEMRMKMKEKGLKKQPGCSWVKIGNQTHLFVVGDKSHPQFEALDSIVSDLRNKM 609



 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 113/485 (23%), Positives = 214/485 (44%), Gaps = 80/485 (16%)

Query: 132 LGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGI 191
           +G +  AR LFD + ERDVV+W  +I GY K G + E  + +                  
Sbjct: 59  VGKLAEARKLFDGLPERDVVTWTDVITGYIKLGNMREARELFD----------------- 101

Query: 192 LTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDV 251
                +++  K                NVV  +++V  Y +  +LS A  LF E   R++
Sbjct: 102 -----RVDSRK----------------NVVTWTAMVSGYLRSKQLSVAETLFQEMPERNI 140

Query: 252 LTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMIL 311
           ++W TM+ GYA+ G ++ A +LF+EMPE+N VSW T+I    + G   +A+ LF RM I 
Sbjct: 141 VSWNTMIDGYAQSGRIDKALELFDEMPERNTVSWNTMIKALVQRGRIDEAMNLFERMPIK 200

Query: 312 RIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDG 371
            +     ++++ +   A    +   +++   +   N     I  +++I  Y+    +++ 
Sbjct: 201 DV----ISWTAMVDGLAKNGKVDEARRLFDCMPERNI----ISWNAMITGYTYNNRIDEA 252

Query: 372 RQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTH 431
            Q+F +   ++ +  WNTMI+   ++    +A  LF  M + +V    I+   ++     
Sbjct: 253 DQLFQVMPERDFAS-WNTMITGFIRNREINRACGLFDRMPQKNV----ISWTAMITGYVE 307

Query: 432 SGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSD--------QLMNQLEKMPY 483
           +   +E L  F  M  D  + PN   +  ++     + CSD        Q+   + K  +
Sbjct: 308 NKENEEALKVFSKMLRDGCVKPNVGTYVSIL-----SACSDLAGLVEGQQIHQLISKSVH 362

Query: 484 EHDSYLWNALHGVCRIHGNIDMGRKVVDQ-LIDQNPQSSATHGLLSSIYSALGKGRLVEK 542
           + +  + +AL  +    G +   RK+ D  L+ Q    S     + ++Y+  G G+   +
Sbjct: 363 QENEVVTSALINMYSKSGELIAARKMFDNGLVCQRDLISWNS--MIAVYAHHGHGKEAIE 420

Query: 543 VRQLINERQFKKEQAISWIE----------IENKVHAFS--VSDSLHPMRDVLYSVLEQL 590
           +   + +  FK  + ++++           +E  +  F   V D   P+R+  Y+ L  L
Sbjct: 421 MYDQMRKHGFKPSE-VTYLNLLFACSHAGLVEKGMEFFKELVRDESLPLREEHYTCLVDL 479

Query: 591 AGQMG 595
            G+ G
Sbjct: 480 CGRAG 484


>gi|297810761|ref|XP_002873264.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297319101|gb|EFH49523.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 624

 Score =  294 bits (753), Expect = 8e-77,   Method: Compositional matrix adjust.
 Identities = 145/462 (31%), Positives = 270/462 (58%), Gaps = 2/462 (0%)

Query: 134 MMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILT 193
           ++ +A  +F  +   ++  +N +I  ++      +   FY  + +  I  +  +F  ++ 
Sbjct: 68  LLGYAYGIFSQIQNPNLFVFNVLIRCFSTGAEPSKAFGFYTQMLKSRIWPDNITFPFLIK 127

Query: 194 ICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLT 253
              ++E + +  Q H Q++  GF ++V + +S+V  YA CG ++ A R+F +   RDV++
Sbjct: 128 ASTEMECVVVGEQTHSQIVRFGFQNDVYVENSLVHMYANCGLIAAAGRIFGQMPFRDVVS 187

Query: 254 WTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRI 313
           WT+MV+GY K G +E A ++F+EMP +N  +W+ +I GY +N   +KA++LF  M    +
Sbjct: 188 WTSMVAGYCKCGMVEDAREMFDEMPHRNLFTWSIMINGYAKNNCFEKAIDLFELMKREGV 247

Query: 314 RPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQ 373
             N+    S + +CA + +L+ G++ H ++++++   N I+ ++L+DMY +CG +    +
Sbjct: 248 VANETVMVSVISSCAHLGALEFGERAHEYVVKSHMTVNLILGTALVDMYWRCGEIEKAIR 307

Query: 374 VFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSG 433
           VF+   +K +S+ W+++I  L  HG+  +AI  F  MVR    P  ITL  +L+AC+H G
Sbjct: 308 VFEELPDK-DSLSWSSIIKGLAVHGHAHKAIHYFSQMVRLGFSPRDITLTAVLSACSHGG 366

Query: 434 LVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNAL 493
           LV +GL  +E+M  D GI P  EH+ C++++L +AG   +  N + KMP + ++ +  AL
Sbjct: 367 LVDKGLEIYENMKRDYGIEPRLEHYGCIVDMLGRAGKLAEAENFILKMPVKPNAPILGAL 426

Query: 494 HGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFK 553
            G C+I+ N ++  +V + LI+  P+ S  + LLS+IY+  G+   +E +R ++ E+  K
Sbjct: 427 LGACKIYKNTEVAERVGNMLIEVKPEHSGYYVLLSNIYACAGQWEKLESLRDIMKEKLVK 486

Query: 554 KEQAISWIEIENKVHAFSVSDSL-HPMRDVLYSVLEQLAGQM 594
           K    S IEI+ K++ FS+ D   HP    +  + E++ G++
Sbjct: 487 KPPGWSLIEIDGKINKFSMGDDQKHPEMGKIKRLWEEILGKI 528



 Score =  146 bits (369), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 69/259 (26%), Positives = 142/259 (54%), Gaps = 5/259 (1%)

Query: 54  TLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDK 113
           T  F+++   E + + +G++ H  +     +    ++ N L+ MY  CG    A ++F +
Sbjct: 121 TFPFLIKASTEMECVVVGEQTHSQIVRFGFQN-DVYVENSLVHMYANCGLIAAAGRIFGQ 179

Query: 114 IPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFY 173
           +P +++ S+ +M++GY   GM++ AR +FD M  R++ +W+ MI GYAK+   E+ +  +
Sbjct: 180 MPFRDVVSWTSMVAGYCKCGMVEDAREMFDEMPHRNLFTWSIMINGYAKNNCFEKAIDLF 239

Query: 174 KVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKC 233
           ++++R  +  NE     +++ C  L  L+   + H  V+ +    N+++ +++VD Y +C
Sbjct: 240 ELMKREGVVANETVMVSVISSCAHLGALEFGERAHEYVVKSHMTVNLILGTALVDMYWRC 299

Query: 234 GELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPE----KNPVSWTTLI 289
           GE+  A R+F+E   +D L+W++++ G A  G    A   F++M         ++ T ++
Sbjct: 300 GEIEKAIRVFEELPDKDSLSWSSIIKGLAVHGHAHKAIHYFSQMVRLGFSPRDITLTAVL 359

Query: 290 AGYTRNGLGQKALELFTRM 308
           +  +  GL  K LE++  M
Sbjct: 360 SACSHGGLVDKGLEIYENM 378



 Score = 62.8 bits (151), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 37/151 (24%), Positives = 77/151 (50%), Gaps = 7/151 (4%)

Query: 33  LSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSN 92
             +AI   +L+ + G+      +  ++  CA   +L+ G+R H ++ +    T    L  
Sbjct: 232 FEKAIDLFELMKREGVVANETVMVSVISSCAHLGALEFGERAHEYV-VKSHMTVNLILGT 290

Query: 93  HLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNM-----AE 147
            L+ MY++CG    A +VF+++P K+  S+++++ G A  G    A + F  M     + 
Sbjct: 291 ALVDMYWRCGEIEKAIRVFEELPDKDSLSWSSIIKGLAVHGHAHKAIHYFSQMVRLGFSP 350

Query: 148 RDVVSWNTMIIGYAKSGAVEEGLKFYKVLRR 178
           RD ++   ++   +  G V++GL+ Y+ ++R
Sbjct: 351 RD-ITLTAVLSACSHGGLVDKGLEIYENMKR 380



 Score = 47.8 bits (112), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 47/211 (22%), Positives = 86/211 (40%), Gaps = 17/211 (8%)

Query: 317 QHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDM---------YSKCGC 367
           +H   + L +C+S   LK    +HGFL+RT+  S+  V S L+ +         +     
Sbjct: 12  KHPKLALLQSCSSFSDLK---IIHGFLLRTHLISDVFVASRLLALALCVDDSTFHKPTNL 68

Query: 368 LNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILN 427
           L     +F    N  N  ++N +I   +      +A   +  M++S + PD IT   ++ 
Sbjct: 69  LGYAYGIFSQIQNP-NLFVFNVLIRCFSTGAEPSKAFGFYTQMLKSRIWPDNITFPFLIK 127

Query: 428 ACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDS 487
           A T    V  G      +    G   +      L+ + A  G          +MP+  D 
Sbjct: 128 ASTEMECVVVGEQTHSQIVR-FGFQNDVYVENSLVHMYANCGLIAAAGRIFGQMPFR-DV 185

Query: 488 YLWNAL-HGVCRIHGNIDMGRKVVDQLIDQN 517
             W ++  G C+  G ++  R++ D++  +N
Sbjct: 186 VSWTSMVAGYCKC-GMVEDAREMFDEMPHRN 215


>gi|297798898|ref|XP_002867333.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297313169|gb|EFH43592.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 792

 Score =  294 bits (753), Expect = 8e-77,   Method: Compositional matrix adjust.
 Identities = 178/560 (31%), Positives = 279/560 (49%), Gaps = 75/560 (13%)

Query: 41  DLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFK 100
           DL+ +   RL   TL  IL   AE + L+LG ++H                    S+  K
Sbjct: 210 DLINESCTRLDTTTLLDILPAVAELQELRLGMQIH--------------------SLATK 249

Query: 101 CGSDVDARKVFDKIPVKNLFSYNNMLSG----YANLGMMKHARNLFDNMAERDVVSWNTM 156
            G                 +S++ +L+G    Y+  G +K A  LF      D+V++N M
Sbjct: 250 TGC----------------YSHDYVLTGFISLYSKCGKIKMASTLFREFRRPDIVAYNAM 293

Query: 157 IIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGF 216
           I GY  +G  E  L  +K L    +S  +   + ++++      L L   +HG  L + F
Sbjct: 294 IHGYTSNGETELSLSLFKELM---LSGAKLKSSTLVSLVPVSGHLMLIYAIHGYSLKSNF 350

Query: 217 LSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNE 276
           LS+  +S                               T + + Y+KL ++ESA KLF+E
Sbjct: 351 LSHTSVS-------------------------------TALTTVYSKLNEIESARKLFDE 379

Query: 277 MPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHG 336
            PEK+  SW  +I+GYT+NGL + A+ LF  M      PN  T +  L ACA + +L  G
Sbjct: 380 SPEKSLPSWNAMISGYTQNGLTEDAISLFREMQNSEFSPNPVTITCILSACAQLGALSLG 439

Query: 337 KQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQ 396
           K VH  +  T+F S+  V ++LI MY+KCG + + R++FD    K+N + WNTMIS    
Sbjct: 440 KWVHDLVRSTDFESSIYVSTALIGMYAKCGSIAEARRLFDFMP-KKNEVTWNTMISGYGL 498

Query: 397 HGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQE 456
           HG+ ++A+ +F +M+ S + P  +T   +L AC+H+GLV+EG   F SM H  G  P+ +
Sbjct: 499 HGHGQEALTIFSEMLNSGIAPTPVTFLCVLYACSHAGLVKEGDEIFNSMIHRYGFEPSVK 558

Query: 457 HHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQ 516
           H+AC++++L +AG   + +  +E MP +    +W  L G CRIH + ++ R V ++L + 
Sbjct: 559 HYACVVDILGRAGHLQRALQFIEAMPIQPGPSVWETLLGACRIHKDTNLARTVSEKLFEL 618

Query: 517 NPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSL 576
           +P +   H LLS+I+SA         VRQ   +R+  K    + IEI    H F+  D  
Sbjct: 619 DPDNVGYHVLLSNIHSADRNYPQAATVRQTAKKRKLAKAPGYTLIEIGETPHVFTSGDQS 678

Query: 577 HPMRDVLYSVLEQLAGQMGE 596
           HP    ++  LE+L G+M E
Sbjct: 679 HPQVKAIHEKLEKLEGKMRE 698



 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 107/419 (25%), Positives = 178/419 (42%), Gaps = 77/419 (18%)

Query: 89  FLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAER 148
            L ++++ MYFK     DARKVFD++P K+   +N M+SGY    M   +  +F ++   
Sbjct: 155 LLGSNIVKMYFKFWRVEDARKVFDRMPEKDTILWNTMISGYRKNEMYVESIQVFRDLINE 214

Query: 149 DVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVH 208
                +T                               +   IL    +L+EL+L  Q+H
Sbjct: 215 SCTRLDTT------------------------------TLLDILPAVAELQELRLGMQIH 244

Query: 209 GQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDME 268
                TG  S+  + +  +  Y+KCG++  A  LF E    D++ +  M+ GY       
Sbjct: 245 SLATKTGCYSHDYVLTGFISLYSKCGKIKMASTLFREFRRPDIVAYNAMIHGY------- 297

Query: 269 SASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACA 328
                                   T NG  + +L LF  +M+   +    T  S +    
Sbjct: 298 ------------------------TSNGETELSLSLFKELMLSGAKLKSSTLVSLVPVSG 333

Query: 329 SIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSML-W 387
            ++ +     +HG+ +++NF S+T V ++L  +YSK   +   R++FD  ++ E S+  W
Sbjct: 334 HLMLI---YAIHGYSLKSNFLSHTSVSTALTTVYSKLNEIESARKLFD--ESPEKSLPSW 388

Query: 388 NTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTH 447
           N MIS  TQ+G  E AI LF +M  S   P+ +T+  IL+AC   G +  G        H
Sbjct: 389 NAMISGYTQNGLTEDAISLFREMQNSEFSPNPVTITCILSACAQLGALSLG-----KWVH 443

Query: 448 DLGIIPNQEH----HACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGN 502
           DL    + E        LI + A+ G   +     + MP + +   WN +     +HG+
Sbjct: 444 DLVRSTDFESSIYVSTALIGMYAKCGSIAEARRLFDFMP-KKNEVTWNTMISGYGLHGH 501



 Score =  102 bits (253), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 78/307 (25%), Positives = 143/307 (46%), Gaps = 32/307 (10%)

Query: 130 ANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFS-ISCNEFSF 188
           ++LG + +AR++F ++   DV  +N ++ G++ + +    L  +  LR+ + +  N  ++
Sbjct: 63  SDLGAIYYARDIFLSVQRPDVFLFNVLMRGFSVNESPHSSLAVFAHLRKSTDLKPNSSTY 122

Query: 189 AGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDA 248
           A  ++      + +    +HGQ +V G  S +++ S+IV  Y K   + DAR++FD    
Sbjct: 123 AFAISAASGFRDDRAGCVIHGQAIVDGCDSELLLGSNIVKMYFKFWRVEDARKVFDRMPE 182

Query: 249 RDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRM 308
           +D + W TM+SGY K           NEM  ++   +  LI             E  TR+
Sbjct: 183 KDTILWNTMISGYRK-----------NEMYVESIQVFRDLIN------------ESCTRL 219

Query: 309 MILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCL 368
                  +  T    L A A +  L+ G Q+H    +T   S+  V++  I +YSKCG +
Sbjct: 220 -------DTTTLLDILPAVAELQELRLGMQIHSLATKTGCYSHDYVLTGFISLYSKCGKI 272

Query: 369 NDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNA 428
                +F     + + + +N MI   T +G  E ++ LF +++ S  K    TL  ++  
Sbjct: 273 KMASTLFR-EFRRPDIVAYNAMIHGYTSNGETELSLSLFKELMLSGAKLKSSTLVSLVPV 331

Query: 429 CTHSGLV 435
             H  L+
Sbjct: 332 SGHLMLI 338


>gi|125552577|gb|EAY98286.1| hypothetical protein OsI_20194 [Oryza sativa Indica Group]
          Length = 874

 Score =  294 bits (753), Expect = 8e-77,   Method: Compositional matrix adjust.
 Identities = 190/662 (28%), Positives = 321/662 (48%), Gaps = 107/662 (16%)

Query: 9   GINRKNLPNNCLIQSFLSLISKGQL-SEAISSLDLLAQRGIRLPAETLAFILQQCAESKS 67
           G+ +KN+       S L+  +  Q+ SE ++    +   GI     T A +L   A   +
Sbjct: 160 GMPKKNVVT---WTSLLTGCAHAQMHSEVMALFFRMRAEGIWPNPFTFASVLSAVASQGA 216

Query: 68  LKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLS 127
           L LG+RVH                    S+ F C S V              F  N++++
Sbjct: 217 LDLGQRVHAQ------------------SVKFGCRSSV--------------FVCNSLMN 244

Query: 128 GYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFS 187
            YA  G+++ A+++F+ M  RD+VSWNT++ G   +    E L+ +   R       + +
Sbjct: 245 MYAKCGLVEDAKSVFNWMETRDMVSWNTLMAGLQLNECELEALQLFHESRATMGKMTQST 304

Query: 188 FAGILTICVKLEELKLTRQV------HGQVLVTGFLS----------------------- 218
           +A ++ +C  L++L L RQ+      HG  L    ++                       
Sbjct: 305 YATVIKLCANLKQLALARQLHSCVLKHGFHLTGNVMTALADAYSKCGELADALNIFSMTT 364

Query: 219 ---NVVISSSIVDAYAKCGELSDARRLFDETDARDVL----------------------- 252
              NVV  ++I+    + G++  A  LF       V+                       
Sbjct: 365 GSRNVVSWTAIISGCIQNGDIPLAVVLFSRMREDRVMPNEFTYSAMLKASLSILPPQIHA 424

Query: 253 ------------TWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQK 300
                         T +++ Y+K G  E A  +F  + +K+ V+W+ +++ + + G  + 
Sbjct: 425 QVIKTNYQHIPSVGTALLASYSKFGSTEDALSIFKMIEQKDVVAWSAMLSCHAQAGDCEG 484

Query: 301 ALELFTRMMILRIRPNQHTFSSCL--CACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSL 358
           A  LF +M I  I+PN+ T SS +  CAC S   +  G+Q H   I+  +     V S+L
Sbjct: 485 ATYLFNKMAIQGIKPNEFTISSVIDACACPS-AGVDQGRQFHAISIKYRYHDAICVSSAL 543

Query: 359 IDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPD 418
           + MYS+ G ++  + VF+   +++  + WN+MIS   QHGY  +AI  F  M  S ++ D
Sbjct: 544 VSMYSRKGNIDSAQIVFERQTDRD-LVSWNSMISGYAQHGYSMKAIETFRQMEASGIQMD 602

Query: 419 KITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQL 478
            +T   ++  CTH+GLV EG  YF+SM  D  I P  EH+AC+++L ++AG  D+ M+ +
Sbjct: 603 GVTFLAVIMGCTHNGLVVEGQQYFDSMVRDHKINPTMEHYACMVDLYSRAGKLDETMSLI 662

Query: 479 EKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGR 538
             MP+   + +W  L G CR+H N+++G+   D+L+   P  S+T+ LLS+IY+A GK +
Sbjct: 663 RDMPFPAGAMVWRTLLGACRVHKNVELGKFSADKLLSLEPHDSSTYVLLSNIYAAAGKWK 722

Query: 539 LVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQMGEDA 598
             ++VR+L++ R+ KKE   SWI+I+NKVH+F   D  HPM D +Y  L+ +  ++ +D 
Sbjct: 723 ERDEVRKLMDYRKVKKEAGCSWIQIKNKVHSFIAFDKSHPMSDQIYKKLKVIITRLKQDG 782

Query: 599 PS 600
            S
Sbjct: 783 YS 784



 Score =  149 bits (375), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 113/469 (24%), Positives = 205/469 (43%), Gaps = 78/469 (16%)

Query: 30  KGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVH-LHLKLTQRKTPTT 88
           +G + E +    +  + G+ + + TL+ +L+ C       LG+++H L +K    +   +
Sbjct: 77  RGMVPEVLDQFSVARRGGVLVDSATLSCVLKACRSVPDRVLGEQLHCLCVKCGHDRGEVS 136

Query: 89  FLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAER 148
                L+ MY KCGS  +  +VF+ +P KN                              
Sbjct: 137 -AGTSLVDMYMKCGSVCEGIEVFEGMPKKN------------------------------ 165

Query: 149 DVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVH 208
            VV+W +++ G A +    E +  +  +R   I  N F+FA +L+       L L ++VH
Sbjct: 166 -VVTWTSLLTGCAHAQMHSEVMALFFRMRAEGIWPNPFTFASVLSAVASQGALDLGQRVH 224

Query: 209 GQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDME 268
            Q +  G  S+V + +S+++ YAKCG + DA+ +F+  + RD+++W              
Sbjct: 225 AQSVKFGCRSSVFVCNSLMNMYAKCGLVEDAKSVFNWMETRDMVSW-------------- 270

Query: 269 SASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACA 328
                             TL+AG   N    +AL+LF        +  Q T+++ +  CA
Sbjct: 271 -----------------NTLMAGLQLNECELEALQLFHESRATMGKMTQSTYATVIKLCA 313

Query: 329 SIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWN 388
           ++  L   +Q+H  +++  F     VM++L D YSKCG L D   +F +T    N + W 
Sbjct: 314 NLKQLALARQLHSCVLKHGFHLTGNVMTALADAYSKCGELADALNIFSMTTGSRNVVSWT 373

Query: 389 TMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHD 448
            +IS   Q+G    A+ LF  M    V P++          T+S +++  L+      H 
Sbjct: 374 AIISGCIQNGDIPLAVVLFSRMREDRVMPNEF---------TYSAMLKASLSILPPQIHA 424

Query: 449 LGIIPNQEH----HACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNAL 493
             I  N +H       L+   ++ G ++  ++ + KM  + D   W+A+
Sbjct: 425 QVIKTNYQHIPSVGTALLASYSKFGSTEDALS-IFKMIEQKDVVAWSAM 472


>gi|225470997|ref|XP_002266598.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic [Vitis vinifera]
 gi|297742795|emb|CBI35475.3| unnamed protein product [Vitis vinifera]
          Length = 517

 Score =  294 bits (753), Expect = 8e-77,   Method: Compositional matrix adjust.
 Identities = 168/545 (30%), Positives = 280/545 (51%), Gaps = 39/545 (7%)

Query: 53  ETLAFILQQCAESKSLKL--GKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKV 110
           +T  F+LQ+C   + LK   GK V L L  ++R+     L+  L++ Y + GS VDA+KV
Sbjct: 4   QTFYFLLQKCGSLEKLKQIHGKAVTLGLLCSKRQ----HLACKLLNTYTQLGSPVDAQKV 59

Query: 111 FDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGL 170
                                          F+++   D+VSW  +I  Y  +    +  
Sbjct: 60  -------------------------------FNHIQNPDIVSWTCLISLYLHTSQPCKAF 88

Query: 171 KFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAY 230
             +  L    +  + F   G ++ C   ++L   R VHG V      S+ ++ ++++D Y
Sbjct: 89  SIFSHLFHSGLRPDSFCVVGAVSACGHRKDLSNGRIVHGMVFRFELGSDPIVGNALIDMY 148

Query: 231 AKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIA 290
           ++ G +  A  +F   + +DV +WT++++G+ K  D+E+A ++F+EMP +N VSWT +I 
Sbjct: 149 SRSGAIEVACSVFKTMEIKDVSSWTSLLNGFIKCNDIEAARRIFDEMPMRNSVSWTAMIT 208

Query: 291 GYTRNGLGQKALELFTRMMIL-RIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFR 349
           GY +  +    LELF  M    +  P   T  + L  CA I +   G  VHG++ +TN  
Sbjct: 209 GYVQGEVPIPGLELFQEMRAEGKDWPTVITIVAVLSGCADIGAFDLGSSVHGYVNKTNLD 268

Query: 350 SNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHD 409
            +  V ++L+DMY+K G L    ++F     K +   W TMIS L  HG    A+  F D
Sbjct: 269 LDVTVNNALMDMYAKSGALVLALKIFQEMP-KRDVFSWTTMISGLALHGKGTHALEAFSD 327

Query: 410 MVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAG 469
           M +S V P+++TL  +L+AC+H+GLV EG + F+ M    GI P  +H+ C+++LL +AG
Sbjct: 328 MSKSGVVPNEVTLLSVLSACSHAGLVVEGRSLFQKMVQCHGIKPKIQHYGCMVDLLGRAG 387

Query: 470 CSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSS 529
              +    +E MP + DS +W +L   C +HGN+ +       +I+  P     + LL +
Sbjct: 388 LLREAKELIEHMPIKPDSVIWRSLLSACLVHGNLALAEMAGKMIIELEPDDDGVYILLWN 447

Query: 530 IYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQ 589
           IY +  +     K R+ + +R+ KK+   SW+E+   VH F   D++H +R  +Y+VLE 
Sbjct: 448 IYCSASRWEDALKARKAMRDRRVKKKPGCSWVEVNGVVHEFLAEDAVHCIRADVYTVLEA 507

Query: 590 LAGQM 594
           +  QM
Sbjct: 508 ITEQM 512



 Score =  136 bits (342), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 99/384 (25%), Positives = 172/384 (44%), Gaps = 39/384 (10%)

Query: 18  NCLIQSFLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVH-L 76
            CLI  +L      Q  +A S    L   G+R  +  +   +  C   K L  G+ VH +
Sbjct: 72  TCLISLYLH---TSQPCKAFSIFSHLFHSGLRPDSFCVVGAVSACGHRKDLSNGRIVHGM 128

Query: 77  HLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMK 136
             +      P   + N LI MY + G+   A  VF  + +K++ S+ ++L+G+     ++
Sbjct: 129 VFRFELGSDP--IVGNALIDMYSRSGAIEVACSVFKTMEIKDVSSWTSLLNGFIKCNDIE 186

Query: 137 HARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISC-NEFSFAGILTIC 195
            AR +FD M  R+ VSW  MI GY +      GL+ ++ +R          +   +L+ C
Sbjct: 187 AARRIFDEMPMRNSVSWTAMITGYVQGEVPIPGLELFQEMRAEGKDWPTVITIVAVLSGC 246

Query: 196 VKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWT 255
             +    L   VHG V  T    +V ++++++D YAK G L  A ++F E   RDV +WT
Sbjct: 247 ADIGAFDLGSSVHGYVNKTNLDLDVTVNNALMDMYAKSGALVLALKIFQEMPKRDVFSWT 306

Query: 256 TMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRP 315
           TM+SG A                                +G G  ALE F+ M    + P
Sbjct: 307 TMISGLA-------------------------------LHGKGTHALEAFSDMSKSGVVP 335

Query: 316 NQHTFSSCLCACASIVSLKHGKQVHGFLIRTN-FRSNTIVMSSLIDMYSKCGCLNDGRQV 374
           N+ T  S L AC+    +  G+ +   +++ +  +        ++D+  + G L + +++
Sbjct: 336 NEVTLLSVLSACSHAGLVVEGRSLFQKMVQCHGIKPKIQHYGCMVDLLGRAGLLREAKEL 395

Query: 375 FDLTDNKENSMLWNTMISALTQHG 398
            +    K +S++W +++SA   HG
Sbjct: 396 IEHMPIKPDSVIWRSLLSACLVHG 419


>gi|223946989|gb|ACN27578.1| unknown [Zea mays]
 gi|414586292|tpg|DAA36863.1| TPA: hypothetical protein ZEAMMB73_743648 [Zea mays]
          Length = 545

 Score =  294 bits (753), Expect = 8e-77,   Method: Compositional matrix adjust.
 Identities = 167/552 (30%), Positives = 286/552 (51%), Gaps = 39/552 (7%)

Query: 59  LQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKN 118
           L+ CA  + L     + + L L+Q    +++++  ++ +    G    A +VF +IP  N
Sbjct: 17  LRTCATFRDLLRAHGLAVRLCLSQ----SSYVATQIVHICNAHGRAAHAARVFAQIPAPN 72

Query: 119 LFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRR 178
           L  +N M+  YA             N   RD               AVE  ++  + L  
Sbjct: 73  LHLHNAMIKAYAQ------------NHLHRD---------------AVEVYVRMLRCLPH 105

Query: 179 -----FSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKC 233
                FS+  + F++  +L  C  L   +L RQVH  V  +G  S+ V+ +S+++ Y +C
Sbjct: 106 PSTAGFSVG-DRFTYPFLLKACGALAASRLGRQVHAHVARSGCESHAVVQNSLIEMYTRC 164

Query: 234 GELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYT 293
           G+LS AR+ FD    +DV++W T++S +A++G M  A +LF  MP+K  VSWT L++GYT
Sbjct: 165 GDLSTARKAFDGMREKDVVSWNTLISAHARMGQMRRARELFYSMPDKTVVSWTALVSGYT 224

Query: 294 RNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTI 353
             G    A+E+F  M +    P+  +  + L ACA + +L+ G+ ++ +  +        
Sbjct: 225 AVGDFTGAVEVFRLMQMEGFEPDDVSIVAVLPACAQLGALELGRWIYAYCSKHGMLGKVY 284

Query: 354 VMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRS 413
           + ++L++MY+KCGC+ +  Q+F     K + + W+T I  L  HG   +A+RLF  M R 
Sbjct: 285 ICNALMEMYAKCGCIEEALQLFHGMSEK-DVISWSTAIGGLAAHGRAREAVRLFEVMDRE 343

Query: 414 S-VKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSD 472
             V P+ IT   +L+AC+H+GLV EGL Y + M  D G+ P  EH+ C+++LL ++G   
Sbjct: 344 GRVMPNGITFVGLLSACSHAGLVDEGLRYLDQMKEDYGVEPGVEHYGCVVDLLGRSGRIQ 403

Query: 473 QLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYS 532
           + ++ +  MP   D  +W +L   CR HG+++      ++L++  P       +L+++Y 
Sbjct: 404 RALDTIRGMPVPPDGKIWGSLLSACRSHGDVETAVVAAERLVELEPGDVGNLVMLANVYG 463

Query: 533 ALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAG 592
           A G+   V   R+ I  R  +K    S IE++N V  F     L P    + +VL+ LA 
Sbjct: 464 AAGRWGEVASTRKEIRSRSTRKTPGCSMIEVDNVVREFVAGQDLGPELGGIATVLDILAS 523

Query: 593 QMGEDAPSLDAD 604
           ++ +D   +D+D
Sbjct: 524 KLADDEELVDSD 535



 Score =  148 bits (374), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 90/355 (25%), Positives = 165/355 (46%), Gaps = 38/355 (10%)

Query: 54  TLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDK 113
           T  F+L+ C    + +LG++VH H+  +  ++    + N LI MY +CG    ARK FD 
Sbjct: 118 TYPFLLKACGALAASRLGRQVHAHVARSGCES-HAVVQNSLIEMYTRCGDLSTARKAFDG 176

Query: 114 IPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFY 173
           +  K++ S+N ++S +A +G M+ AR LF +M ++ VVSW  ++ GY   G     ++ +
Sbjct: 177 MREKDVVSWNTLISAHARMGQMRRARELFYSMPDKTVVSWTALVSGYTAVGDFTGAVEVF 236

Query: 174 KVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKC 233
           ++++      ++ S   +L  C +L  L+L R ++      G L  V I +++++ YAKC
Sbjct: 237 RLMQMEGFEPDDVSIVAVLPACAQLGALELGRWIYAYCSKHGMLGKVYICNALMEMYAKC 296

Query: 234 GELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYT 293
           G + +A +LF     +DV++W+T + G A  G    A +LF  M  +             
Sbjct: 297 GCIEEALQLFHGMSEKDVISWSTAIGGLAAHGRAREAVRLFEVMDREG------------ 344

Query: 294 RNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFL--IRTNFRSN 351
                             R+ PN  TF   L AC+    +  G +   +L  ++ ++   
Sbjct: 345 ------------------RVMPNGITFVGLLSACSHAGLVDEGLR---YLDQMKEDYGVE 383

Query: 352 TIV--MSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAI 404
             V     ++D+  + G +              +  +W +++SA   HG  E A+
Sbjct: 384 PGVEHYGCVVDLLGRSGRIQRALDTIRGMPVPPDGKIWGSLLSACRSHGDVETAV 438



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 39/168 (23%), Positives = 81/168 (48%), Gaps = 11/168 (6%)

Query: 14  NLPNNCLIQSFLSLISK----GQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLK 69
           ++P+  ++ S+ +L+S     G  + A+    L+   G      ++  +L  CA+  +L+
Sbjct: 207 SMPDKTVV-SWTALVSGYTAVGDFTGAVEVFRLMQMEGFEPDDVSIVAVLPACAQLGALE 265

Query: 70  LGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGY 129
           LG+ ++ +           ++ N L+ MY KCG   +A ++F  +  K++ S++  + G 
Sbjct: 266 LGRWIYAYCS-KHGMLGKVYICNALMEMYAKCGCIEEALQLFHGMSEKDVISWSTAIGGL 324

Query: 130 ANLGMMKHARNLFDNMAERDVVSWN-----TMIIGYAKSGAVEEGLKF 172
           A  G  + A  LF+ M     V  N      ++   + +G V+EGL++
Sbjct: 325 AAHGRAREAVRLFEVMDREGRVMPNGITFVGLLSACSHAGLVDEGLRY 372


>gi|449508565|ref|XP_004163348.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At3g23330-like [Cucumis
           sativus]
          Length = 712

 Score =  294 bits (753), Expect = 8e-77,   Method: Compositional matrix adjust.
 Identities = 147/460 (31%), Positives = 250/460 (54%), Gaps = 32/460 (6%)

Query: 139 RNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKL 198
           R +F+ M E+D+VSWNT+I G A++G  EE L+  + +   ++  + F+ + +L +  + 
Sbjct: 193 RKIFEMMPEKDLVSWNTIIAGNARNGLYEETLRMIREMGGANLKPDSFTLSSVLPLIAEN 252

Query: 199 EELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMV 258
            ++   +++HG  +  G  +++ ++SS++D YAKC  ++D+ R                 
Sbjct: 253 VDISRGKEIHGCSIRQGLDADIYVASSLIDMYAKCTRVADSCR----------------- 295

Query: 259 SGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQH 318
                         +F  + E++ +SW ++IAG  +NGL  + L  F +M++ +I+P  +
Sbjct: 296 --------------VFTLLTERDGISWNSIIAGCVQNGLFDEGLRFFRQMLMAKIKPKSY 341

Query: 319 TFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLT 378
           +FSS + ACA + +L  GKQ+HG++ R  F  N  + SSL+DMY+KCG +   +Q+FD  
Sbjct: 342 SFSSIMPACAHLTTLHLGKQLHGYITRNGFDENIFIASSLVDMYAKCGNIRTAKQIFDRM 401

Query: 379 DNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEG 438
             ++  + W  MI     HG    AI LF  M    +KP+ +    +L AC+H GLV E 
Sbjct: 402 RLRD-MVSWTAMIMGCALHGQAPDAIELFEQMETEGIKPNHVAFMAVLTACSHGGLVDEA 460

Query: 439 LTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCR 498
             YF SMT D GI P  EH+A + +LL +AG  ++  + +  M       +W  L   CR
Sbjct: 461 WKYFNSMTRDFGIAPGVEHYAAVSDLLGRAGRLEEAYDFICGMHIGPTGSIWATLLSACR 520

Query: 499 IHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAI 558
           +H NIDM  KV +++++ +P ++  + LL++IYSA  + +   K R  +     +K  A 
Sbjct: 521 VHXNIDMAEKVANRILEVDPNNTGAYILLANIYSAARRWKEAAKWRASMRRIGIRKTPAC 580

Query: 559 SWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQMGEDA 598
           SWIE++NKV+AF   D  HP  + +   +E L   M ++ 
Sbjct: 581 SWIEVKNKVYAFMAGDESHPCYEKIREAMEVLVELMEKEG 620



 Score =  157 bits (397), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 110/427 (25%), Positives = 204/427 (47%), Gaps = 18/427 (4%)

Query: 129 YANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSF 188
           Y+++ ++  +  LF+ +     ++W ++I  Y   G   + L  +  +    +  +   F
Sbjct: 50  YSHINLLHDSLRLFNTIHFPPALAWKSVIRCYTSHGLPHQSLGSFIGMLASGLYPDHNVF 109

Query: 189 AGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARR------- 241
             +L  C  L +L L   +HG ++  G   ++   +++++ Y+K   L ++ R       
Sbjct: 110 PSVLKSCALLMDLNLGESLHGYIIRVGLDFDLYTGNALMNMYSKLRFLEESGRQRLGAGE 169

Query: 242 LFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKA 301
           +FDE   R     T  V   + L + +S  K+F  MPEK+ VSW T+IAG  RNGL ++ 
Sbjct: 170 VFDEMTER-----TRSVRTVSVLSE-DSVRKIFEMMPEKDLVSWNTIIAGNARNGLYEET 223

Query: 302 LELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDM 361
           L +   M    ++P+  T SS L   A  V +  GK++HG  IR    ++  V SSLIDM
Sbjct: 224 LRMIREMGGANLKPDSFTLSSVLPLIAENVDISRGKEIHGCSIRQGLDADIYVASSLIDM 283

Query: 362 YSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKIT 421
           Y+KC  + D  +VF L   ++  + WN++I+   Q+G  ++ +R F  M+ + +KP   +
Sbjct: 284 YAKCTRVADSCRVFTLLTERDG-ISWNSIIAGCVQNGLFDEGLRFFRQMLMAKIKPKSYS 342

Query: 422 LAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKM 481
            + I+ AC H   +  G      +T + G   N    + L+++ A+ G         ++M
Sbjct: 343 FSSIMPACAHLTTLHLGKQLHGYITRN-GFDENIFIASSLVDMYAKCGNIRTAKQIFDRM 401

Query: 482 PYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVE 541
               D   W A+   C +HG      ++ +Q+  +  + +  H    ++ +A   G LV+
Sbjct: 402 RLR-DMVSWTAMIMGCALHGQAPDAIELFEQMETEGIKPN--HVAFMAVLTACSHGGLVD 458

Query: 542 KVRQLIN 548
           +  +  N
Sbjct: 459 EAWKYFN 465



 Score = 62.0 bits (149), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 39/169 (23%), Positives = 82/169 (48%), Gaps = 6/169 (3%)

Query: 28  ISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPT 87
           +  G   E +     +    I+  + + + I+  CA   +L LGK++H ++         
Sbjct: 316 VQNGLFDEGLRFFRQMLMAKIKPKSYSFSSIMPACAHLTTLHLGKQLHGYITRNGFDE-N 374

Query: 88  TFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAE 147
            F+++ L+ MY KCG+   A+++FD++ ++++ S+  M+ G A  G    A  LF+ M  
Sbjct: 375 IFIASSLVDMYAKCGNIRTAKQIFDRMRLRDMVSWTAMIMGCALHGQAPDAIELFEQMET 434

Query: 148 RDV----VSWNTMIIGYAKSGAVEEGLKFYKVLRR-FSISCNEFSFAGI 191
             +    V++  ++   +  G V+E  K++  + R F I+     +A +
Sbjct: 435 EGIKPNHVAFMAVLTACSHGGLVDEAWKYFNSMTRDFGIAPGVEHYAAV 483


>gi|356515406|ref|XP_003526391.1| PREDICTED: pentatricopeptide repeat-containing protein At3g24000,
           mitochondrial-like [Glycine max]
          Length = 647

 Score =  294 bits (753), Expect = 8e-77,   Method: Compositional matrix adjust.
 Identities = 165/539 (30%), Positives = 277/539 (51%), Gaps = 65/539 (12%)

Query: 58  ILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVK 117
           +L++C +   LK GK VH H+ L         + N L+ MY +CGS              
Sbjct: 80  LLKRCTQLGKLKEGKLVHFHV-LNSNFKHDLVIQNSLLFMYARCGS-------------- 124

Query: 118 NLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLR 177
                            ++ AR LFD M  RD+VSW +MI GYA++    + L  +  + 
Sbjct: 125 -----------------LEGARRLFDEMPHRDMVSWTSMITGYAQNDRASDALLLFPRML 167

Query: 178 RFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELS 237
                 NEF+ + ++  C  +      RQ+H      G  SNV + SS+VD YA+CG L 
Sbjct: 168 SDGAEPNEFTLSSLVKCCGYMASYNCGRQIHACCWKYGCHSNVFVGSSLVDMYARCGYLG 227

Query: 238 DARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGL 297
           +A  +FD+   ++ ++W  +++GYA+ G+                               
Sbjct: 228 EAMLVFDKLGCKNEVSWNALIAGYARKGE------------------------------- 256

Query: 298 GQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSS 357
           G++AL LF RM     RP + T+S+ L +C+S+  L+ GK +H  L++++ +    V ++
Sbjct: 257 GEEALALFVRMQREGYRPTEFTYSALLSSCSSMGCLEQGKWLHAHLMKSSQKLVGYVGNT 316

Query: 358 LIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKP 417
           L+ MY+K G + D  +VFD    K + +  N+M+    QHG  ++A + F +M+R  ++P
Sbjct: 317 LLHMYAKSGSIRDAEKVFDKL-VKVDVVSCNSMLIGYAQHGLGKEAAQQFDEMIRFGIEP 375

Query: 418 DKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQ 477
           + IT   +L AC+H+ L+ EG  YF  +     I P   H+A +++LL +AG  DQ  + 
Sbjct: 376 NDITFLSVLTACSHARLLDEGKHYF-GLMRKYNIEPKVSHYATIVDLLGRAGLLDQAKSF 434

Query: 478 LEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKG 537
           +E+MP E    +W AL G  ++H N +MG     ++ + +P    TH LL++IY++ G+ 
Sbjct: 435 IEEMPIEPTVAIWGALLGASKMHKNTEMGAYAAQRVFELDPSYPGTHTLLANIYASAGRW 494

Query: 538 RLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQMGE 596
             V KVR+++ +   KKE A SW+E+EN VH F  +D  HP ++ ++ + E+L  ++ E
Sbjct: 495 EDVAKVRKIMKDSGVKKEPACSWVEVENSVHVFVANDVAHPQKEKIHKMWEKLNQKIKE 553



 Score = 81.3 bits (199), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 71/270 (26%), Positives = 132/270 (48%), Gaps = 14/270 (5%)

Query: 30  KGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTF 89
           KG+  EA++    + + G R    T + +L  C+    L+ GK +H HL  + +K    +
Sbjct: 254 KGEGEEALALFVRMQREGYRPTEFTYSALLSSCSSMGCLEQGKWLHAHLMKSSQKL-VGY 312

Query: 90  LSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNM---- 145
           + N L+ MY K GS  DA KVFDK+   ++ S N+ML GYA  G+ K A   FD M    
Sbjct: 313 VGNTLLHMYAKSGSIRDAEKVFDKLVKVDVVSCNSMLIGYAQHGLGKEAAQQFDEMIRFG 372

Query: 146 AERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTR 205
            E + +++ +++   + +  ++EG  ++ ++R+++I      +A I+ +  +   L   +
Sbjct: 373 IEPNDITFLSVLTACSHARLLDEGKHYFGLMRKYNIEPKVSHYATIVDLLGRAGLLDQAK 432

Query: 206 QVHGQVLV--TGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAK 263
               ++ +  T  +   ++ +S +    + G  + A+R+F E D     T T + + YA 
Sbjct: 433 SFIEEMPIEPTVAIWGALLGASKMHKNTEMGAYA-AQRVF-ELDPSYPGTHTLLANIYAS 490

Query: 264 LGDMESASKLFNEMPE----KNPV-SWTTL 288
            G  E  +K+   M +    K P  SW  +
Sbjct: 491 AGRWEDVAKVRKIMKDSGVKKEPACSWVEV 520



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 45/181 (24%), Positives = 93/181 (51%), Gaps = 3/181 (1%)

Query: 313 IRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGR 372
           + P++  +++ L  C  +  LK GK VH  ++ +NF+ + ++ +SL+ MY++CG L   R
Sbjct: 70  LEPDRTLYNTLLKRCTQLGKLKEGKLVHFHVLNSNFKHDLVIQNSLLFMYARCGSLEGAR 129

Query: 373 QVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHS 432
           ++FD   +++  + W +MI+   Q+     A+ LF  M+    +P++ TL+ ++  C + 
Sbjct: 130 RLFDEMPHRD-MVSWTSMITGYAQNDRASDALLLFPRMLSDGAEPNEFTLSSLVKCCGYM 188

Query: 433 GLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNA 492
                G     +     G   N    + L+++ A+ G   + M   +K+  +++   WNA
Sbjct: 189 ASYNCG-RQIHACCWKYGCHSNVFVGSSLVDMYARCGYLGEAMLVFDKLGCKNEVS-WNA 246

Query: 493 L 493
           L
Sbjct: 247 L 247


>gi|357480155|ref|XP_003610363.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355511418|gb|AES92560.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 734

 Score =  294 bits (753), Expect = 8e-77,   Method: Compositional matrix adjust.
 Identities = 180/577 (31%), Positives = 289/577 (50%), Gaps = 78/577 (13%)

Query: 103 SDVDARKVFDKIPVK-----NLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMI 157
           SDV A K    + VK     +++  +++L+ Y   G +  AR LFD M ER+ VSW TMI
Sbjct: 132 SDVVAGKQAHSVAVKTGCSGDVYVGSSLLNMYCKTGFVFDARKLFDRMPERNTVSWATMI 191

Query: 158 IGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFL 217
            GYA S   ++ ++ ++++RR     NEF+   +L+       +   RQVH   +  G L
Sbjct: 192 SGYASSDIADKAVEVFELMRREEEIQNEFALTSVLSALTSDVFVYTGRQVHSLAIKNGLL 251

Query: 218 S-------------------------------NVVISSSIVDAYAKCGELSDARRLFDET 246
           +                               N +  S++V  YA+ G+   A +LF++ 
Sbjct: 252 AIVSVANALVTMYAKCGSLDDAVRTFEFSGDKNSITWSAMVTGYAQGGDSDKALKLFNKM 311

Query: 247 DARDVL---------------------------------------TWTTMVSGYAKLGDM 267
            +  VL                                         + +V  YAK G +
Sbjct: 312 HSSGVLPSEFTLVGVINACSDLCAVVEGKQMHSFAFKLGFGLQLYVLSAVVDMYAKCGSL 371

Query: 268 ESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCAC 327
             A K F  + + + V WT++I GY +NG  +  L L+ +M + R+ PN+ T +S L AC
Sbjct: 372 ADARKGFECVQQPDVVLWTSIITGYVQNGDYEGGLNLYGKMQMERVIPNELTMASVLRAC 431

Query: 328 ASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLW 387
           +S+ +L  GKQ+H  +I+  F+    + S+L  MY+KCG L+DG  +F    +++  + W
Sbjct: 432 SSLAALDQGKQMHARIIKYGFKLEVPIGSALSAMYTKCGSLDDGYLIFWRMPSRD-VISW 490

Query: 388 NTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTH 447
           N MIS L+Q+G+  +A+ LF  M+   +KPD +T   +L+AC+H GLV  G  YF+ M  
Sbjct: 491 NAMISGLSQNGHGNKALELFEKMLLEGIKPDPVTFVNLLSACSHMGLVDRGWEYFKMMFD 550

Query: 448 DLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGR 507
           +  I P  EH+AC++++L++AG  ++    +E    +H   LW  L G C+ H N ++G 
Sbjct: 551 EFNIAPMVEHYACMVDILSRAGKLNEAKEFIESATVDHGLCLWRILLGACKNHRNYELGV 610

Query: 508 KVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKV 567
              ++L++     S+ + LLSSIY+ALG    VE+VR+++  R   KE   SWIE++  V
Sbjct: 611 YAGEKLVELGSPESSAYVLLSSIYTALGDRENVERVRRIMKARGVNKEPGCSWIELKGLV 670

Query: 568 HAFSVSDSLHPMRDVLYSVLEQLAGQMGEDA--PSLD 602
           H F V D+ HP  D +   LE L   M ++   P LD
Sbjct: 671 HVFVVGDNQHPQVDEIRLELELLTKLMIDEGYQPLLD 707



 Score =  173 bits (438), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 114/429 (26%), Positives = 204/429 (47%), Gaps = 65/429 (15%)

Query: 11  NRKNLPNNCLIQSFLSLISKGQLSEAISSLDLLAQRGIRLP-AETLAFILQQCAESKSLK 69
           ++ ++  N LI +F    S    S AIS    + +    +P A TLA +    +    + 
Sbjct: 76  DKDDVSWNSLINAFSQNHSSSSSSFAISLFRRMMRANNVIPNAHTLAGVFSAASNLSDVV 135

Query: 70  LGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGY 129
            GK+ H  + +    +   ++ + L++MY K G   DARK+FD++P +N  S+  M+SGY
Sbjct: 136 AGKQAH-SVAVKTGCSGDVYVGSSLLNMYCKTGFVFDARKLFDRMPERNTVSWATMISGY 194

Query: 130 ANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFA 189
           A+                               S   ++ ++ ++++RR     NEF+  
Sbjct: 195 AS-------------------------------SDIADKAVEVFELMRREEEIQNEFALT 223

Query: 190 GILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDAR 249
            +L+       +   RQVH   +  G L+ V +++++V  YAKCG L DA R F+ +  +
Sbjct: 224 SVLSALTSDVFVYTGRQVHSLAIKNGLLAIVSVANALVTMYAKCGSLDDAVRTFEFSGDK 283

Query: 250 DVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMM 309
           + +TW+ MV+GYA+ GD + A KLFN+M                                
Sbjct: 284 NSITWSAMVTGYAQGGDSDKALKLFNKMHSSG---------------------------- 315

Query: 310 ILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLN 369
              + P++ T    + AC+ + ++  GKQ+H F  +  F     V+S+++DMY+KCG L 
Sbjct: 316 ---VLPSEFTLVGVINACSDLCAVVEGKQMHSFAFKLGFGLQLYVLSAVVDMYAKCGSLA 372

Query: 370 DGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNAC 429
           D R+ F+    + + +LW ++I+   Q+G  E  + L+  M    V P+++T+A +L AC
Sbjct: 373 DARKGFECV-QQPDVVLWTSIITGYVQNGDYEGGLNLYGKMQMERVIPNELTMASVLRAC 431

Query: 430 THSGLVQEG 438
           +    + +G
Sbjct: 432 SSLAALDQG 440



 Score =  161 bits (407), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 111/414 (26%), Positives = 196/414 (47%), Gaps = 50/414 (12%)

Query: 116 VKNLFSYNNMLSGYANLGMMKHARNLFD--NMAERDVVSWNTMIIGYAKSGAVEEGL--- 170
           + +++  N  L+ YA    + HA  LFD  N  ++D VSWN++I  ++++ +        
Sbjct: 43  ISSIYVTNTFLNLYAKTNHLSHALTLFDSINDNDKDDVSWNSLINAFSQNHSSSSSSFAI 102

Query: 171 -KFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDA 229
             F +++R  ++  N  + AG+ +    L ++   +Q H   + TG   +V + SS+++ 
Sbjct: 103 SLFRRMMRANNVIPNAHTLAGVFSAASNLSDVVAGKQAHSVAVKTGCSGDVYVGSSLLNM 162

Query: 230 YAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLI 289
           Y K G + DAR                               KLF+ MPE+N VSW T+I
Sbjct: 163 YCKTGFVFDAR-------------------------------KLFDRMPERNTVSWATMI 191

Query: 290 AGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFR 349
           +GY  + +  KA+E+F  M       N+   +S L A  S V +  G+QVH   I+    
Sbjct: 192 SGYASSDIADKAVEVFELMRREEEIQNEFALTSVLSALTSDVFVYTGRQVHSLAIKNGLL 251

Query: 350 SNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHD 409
           +   V ++L+ MY+KCG L+D  + F+ + +K NS+ W+ M++   Q G  ++A++LF+ 
Sbjct: 252 AIVSVANALVTMYAKCGSLDDAVRTFEFSGDK-NSITWSAMVTGYAQGGDSDKALKLFNK 310

Query: 410 MVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAG 469
           M  S V P + TL  ++NAC+    V EG     S    LG        + ++++ A+ G
Sbjct: 311 MHSSGVLPSEFTLVGVINACSDLCAVVEG-KQMHSFAFKLGFGLQLYVLSAVVDMYAKCG 369

Query: 470 CSDQLMNQLEKMPYEHDSYLWNAL----------HGVCRIHGNIDMGRKVVDQL 513
                    E +  + D  LW ++           G   ++G + M R + ++L
Sbjct: 370 SLADARKGFECVQ-QPDVVLWTSIITGYVQNGDYEGGLNLYGKMQMERVIPNEL 422



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 91/369 (24%), Positives = 159/369 (43%), Gaps = 66/369 (17%)

Query: 31  GQLSEAISSLDLLAQRGIRLPAE-TLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTF 89
           G   +A+   + +   G+ LP+E TL  ++  C++  ++  GK++H              
Sbjct: 299 GDSDKALKLFNKMHSSGV-LPSEFTLVGVINACSDLCAVVEGKQMH-------------- 343

Query: 90  LSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERD 149
                 S  FK G  +             L+  + ++  YA  G +  AR  F+ + + D
Sbjct: 344 ------SFAFKLGFGL------------QLYVLSAVVDMYAKCGSLADARKGFECVQQPD 385

Query: 150 VVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHG 209
           VV W ++I GY ++G  E GL  Y  ++   +  NE + A +L  C  L  L   +Q+H 
Sbjct: 386 VVLWTSIITGYVQNGDYEGGLNLYGKMQMERVIPNELTMASVLRACSSLAALDQGKQMHA 445

Query: 210 QVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMES 269
           +++  GF   V I S++   Y KCG L D   +F    +RDV++W  M+SG ++      
Sbjct: 446 RIIKYGFKLEVPIGSALSAMYTKCGSLDDGYLIFWRMPSRDVISWNAMISGLSQ------ 499

Query: 270 ASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACAS 329
                                    NG G KALELF +M++  I+P+  TF + L AC+ 
Sbjct: 500 -------------------------NGHGNKALELFEKMLLEGIKPDPVTFVNLLSACSH 534

Query: 330 IVSLKHGKQVHGFLI-RTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWN 388
           +  +  G +    +    N        + ++D+ S+ G LN+ ++  +         LW 
Sbjct: 535 MGLVDRGWEYFKMMFDEFNIAPMVEHYACMVDILSRAGKLNEAKEFIESATVDHGLCLWR 594

Query: 389 TMISALTQH 397
            ++ A   H
Sbjct: 595 ILLGACKNH 603



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 80/313 (25%), Positives = 140/313 (44%), Gaps = 36/313 (11%)

Query: 205 RQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKL 264
           R +H ++L TG +S++ ++++ ++ YAK   LS A  LFD  +  D              
Sbjct: 31  RTLHARILKTGSISSIYVTNTFLNLYAKTNHLSHALTLFDSINDND-------------- 76

Query: 265 GDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQK---ALELFTRMMIL-RIRPNQHTF 320
                          K+ VSW +LI  +++N        A+ LF RMM    + PN HT 
Sbjct: 77  ---------------KDDVSWNSLINAFSQNHSSSSSSFAISLFRRMMRANNVIPNAHTL 121

Query: 321 SSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDN 380
           +    A +++  +  GKQ H   ++T    +  V SSL++MY K G + D R++FD    
Sbjct: 122 AGVFSAASNLSDVVAGKQAHSVAVKTGCSGDVYVGSSLLNMYCKTGFVFDARKLFDRMPE 181

Query: 381 KENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLT 440
           + N++ W TMIS        ++A+ +F  M R     ++  L  +L+A T    V  G  
Sbjct: 182 R-NTVSWATMISGYASSDIADKAVEVFELMRREEEIQNEFALTSVLSALTSDVFVYTG-R 239

Query: 441 YFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIH 500
              S+    G++        L+ + A+ G  D  +   E    + +S  W+A+       
Sbjct: 240 QVHSLAIKNGLLAIVSVANALVTMYAKCGSLDDAVRTFE-FSGDKNSITWSAMVTGYAQG 298

Query: 501 GNIDMGRKVVDQL 513
           G+ D   K+ +++
Sbjct: 299 GDSDKALKLFNKM 311



 Score = 55.5 bits (132), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 62/284 (21%), Positives = 130/284 (45%), Gaps = 49/284 (17%)

Query: 308 MMILRIRPNQH-TFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCG 366
           M + +I P QH      L  C    ++  G+ +H  +++T   S+  V ++ +++Y+K  
Sbjct: 1   MSLPKIFPPQHRQLLQDLIECTHNKNILKGRTLHARILKTGSISSIYVTNTFLNLYAKTN 60

Query: 367 CLNDGRQVFD-LTDNKENSMLWNTMISALTQHGYDEQ---AIRLFHDMVRSSVKPDKITL 422
            L+    +FD + DN ++ + WN++I+A +Q+        AI LF  M+R++        
Sbjct: 61  HLSHALTLFDSINDNDKDDVSWNSLINAFSQNHSSSSSSFAISLFRRMMRAN-------- 112

Query: 423 AVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMP 482
            VI NA T +G+       F + ++   ++  ++ H+  +    + GCS           
Sbjct: 113 NVIPNAHTLAGV-------FSAASNLSDVVAGKQAHSVAV----KTGCSG---------- 151

Query: 483 YEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEK 542
              D Y+ ++L  +    G +   RK+ D++ ++N  S AT  ++S   S+    + VE 
Sbjct: 152 ---DVYVGSSLLNMYCKTGFVFDARKLFDRMPERNTVSWAT--MISGYASSDIADKAVEV 206

Query: 543 VRQLINERQFKKEQAIS----------WIEIENKVHAFSVSDSL 576
              +  E + + E A++          ++    +VH+ ++ + L
Sbjct: 207 FELMRREEEIQNEFALTSVLSALTSDVFVYTGRQVHSLAIKNGL 250


>gi|115466812|ref|NP_001057005.1| Os06g0185800 [Oryza sativa Japonica Group]
 gi|55773756|dbj|BAD72439.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113595045|dbj|BAF18919.1| Os06g0185800 [Oryza sativa Japonica Group]
 gi|125596288|gb|EAZ36068.1| hypothetical protein OsJ_20378 [Oryza sativa Japonica Group]
          Length = 787

 Score =  294 bits (753), Expect = 9e-77,   Method: Compositional matrix adjust.
 Identities = 184/587 (31%), Positives = 291/587 (49%), Gaps = 77/587 (13%)

Query: 16  PNNCLIQSFLSLISKGQLSEAISSLDLLAQRG-IRLPAETLAFILQQCAESKSLKLGKRV 74
           P+  L  + L+ +S    SEA+ S   +   G +R  A TLA +L   AE   + +G+ V
Sbjct: 178 PDTVLWNTLLAGLSG---SEAVESFARMVCDGSVRPDATTLASVLPAAAEVADVTMGRCV 234

Query: 75  HLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSG----YA 130
           H                    S   KCG                L  + ++L+G    Y+
Sbjct: 235 H--------------------SFAEKCG----------------LAEHEHVLTGLISLYS 258

Query: 131 NLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAG 190
             G ++ AR LFD M + D+V++N +I GY+ +G V   +  +  L    +  N  +   
Sbjct: 259 KCGDVESARCLFDMMEKPDLVAYNALISGYSVNGMVGSSVNLFTELMTLGLWPNSSTLVA 318

Query: 191 ILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARD 250
           ++ +        L + +HG VL +GF +N  +S++I                        
Sbjct: 319 LIPVHSPFGHDLLAQCLHGFVLKSGFTANSPVSTAI------------------------ 354

Query: 251 VLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMI 310
               TT+   + +L DMESA K F+ MPEK   SW  +I+GY +NGL + A+ LF +M+ 
Sbjct: 355 ----TTL---HCRLNDMESARKAFDTMPEKTMESWNAMISGYAQNGLTEMAVALFEQMVK 407

Query: 311 LRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLND 370
           L +RPN  T SS L ACA + +L  GK +H  +   +   N  VM++LIDMY+KCG +++
Sbjct: 408 LNVRPNPITISSTLSACAQLGALSLGKWLHRIITEEDLEPNVYVMTALIDMYAKCGSISE 467

Query: 371 GRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACT 430
            R++F+  DNK N + WN MI+    HG   +A++L+ DM+ + + P   T   +L AC+
Sbjct: 468 ARRIFNTMDNK-NVVSWNAMIAGYGLHGQGAEALKLYKDMLDAHLLPTSATFLSVLYACS 526

Query: 431 HSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEH-DSYL 489
           H GLV+EG   F SMT D  I P  EH  C+++LL +AG   +    + + P       +
Sbjct: 527 HGGLVEEGWKVFRSMTDDYAINPGIEHCTCMVDLLGRAGQLKEAFELISEFPKSAVGPGV 586

Query: 490 WNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINE 549
           W AL G C +H + D+ +    +L + +P++S  + LLS+++++  +      VRQ    
Sbjct: 587 WGALLGACMVHKDSDLAKLASQKLFELDPENSGYYVLLSNLHTSKKQYSEAAVVRQEAKS 646

Query: 550 RQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQMGE 596
           R+  K    + IEI NK H F   D  HP  + +YS LE+L  +M E
Sbjct: 647 RKLVKTPGYTLIEIGNKPHVFMAGDRAHPQSEAIYSYLEKLTAKMIE 693



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 104/416 (25%), Positives = 189/416 (45%), Gaps = 43/416 (10%)

Query: 129 YANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSF 188
           Y  L  + HAR +FD +   D V WNT++ G + S AVE    F +++   S+  +  + 
Sbjct: 159 YFVLSRVDHARKVFDTVPSPDTVLWNTLLAGLSGSEAVE---SFARMVCDGSVRPDATTL 215

Query: 189 AGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDA 248
           A +L    ++ ++ + R VH      G   +  + + ++  Y+KCG++  AR LFD  + 
Sbjct: 216 ASVLPAAAEVADVTMGRCVHSFAEKCGLAEHEHVLTGLISLYSKCGDVESARCLFDMMEK 275

Query: 249 RDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRM 308
            D++ +  ++SGY                               + NG+   ++ LFT +
Sbjct: 276 PDLVAYNALISGY-------------------------------SVNGMVGSSVNLFTEL 304

Query: 309 MILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCL 368
           M L + PN  T  + +   +        + +HGF++++ F +N+ V +++  ++ +   +
Sbjct: 305 MTLGLWPNSSTLVALIPVHSPFGHDLLAQCLHGFVLKSGFTANSPVSTAITTLHCRLNDM 364

Query: 369 NDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNA 428
              R+ FD    K     WN MIS   Q+G  E A+ LF  MV+ +V+P+ IT++  L+A
Sbjct: 365 ESARKAFDTMPEKTMES-WNAMISGYAQNGLTEMAVALFEQMVKLNVRPNPITISSTLSA 423

Query: 429 CTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSY 488
           C   G +  G  +   +  +  + PN      LI++ A+ G   +       M    +  
Sbjct: 424 CAQLGALSLG-KWLHRIITEEDLEPNVYVMTALIDMYAKCGSISEARRIFNTMD-NKNVV 481

Query: 489 LWNALHGVCRIHGNIDMGRKVVDQLIDQN--PQSSATHGLLSSIYSALGKGRLVEK 542
            WNA+     +HG      K+   ++D +  P S+     LS +Y A   G LVE+
Sbjct: 482 SWNAMIAGYGLHGQGAEALKLYKDMLDAHLLPTSAT---FLSVLY-ACSHGGLVEE 533



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 80/341 (23%), Positives = 149/341 (43%), Gaps = 35/341 (10%)

Query: 250 DVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMM 309
           D    + +   Y  L  ++ A K+F+ +P  + V W TL+AG +    G +A+E F RM+
Sbjct: 148 DTFVASALAKLYFVLSRVDHARKVFDTVPSPDTVLWNTLLAGLS----GSEAVESFARMV 203

Query: 310 I-LRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCL 368
               +RP+  T +S L A A +  +  G+ VH F  +     +  V++ LI +YSKCG +
Sbjct: 204 CDGSVRPDATTLASVLPAAAEVADVTMGRCVHSFAEKCGLAEHEHVLTGLISLYSKCGDV 263

Query: 369 NDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAV---- 424
              R +FD+ + K + + +N +IS  + +G    ++ LF +++   + P+  TL      
Sbjct: 264 ESARCLFDMME-KPDLVAYNALISGYSVNGMVGSSVNLFTELMTLGLWPNSSTLVALIPV 322

Query: 425 -------ILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQ 477
                  +L  C H  +++ G T             N      +  L  +    +     
Sbjct: 323 HSPFGHDLLAQCLHGFVLKSGFT------------ANSPVSTAITTLHCRLNDMESARKA 370

Query: 478 LEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSA---L 534
            + MP E     WNA+      +G  +M   + +Q++  N + +     +SS  SA   L
Sbjct: 371 FDTMP-EKTMESWNAMISGYAQNGLTEMAVALFEQMVKLNVRPNPI--TISSTLSACAQL 427

Query: 535 GKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDS 575
           G   L + + ++I E   +    +    I+      S+S++
Sbjct: 428 GALSLGKWLHRIITEEDLEPNVYVMTALIDMYAKCGSISEA 468


>gi|224064340|ref|XP_002301427.1| predicted protein [Populus trichocarpa]
 gi|222843153|gb|EEE80700.1| predicted protein [Populus trichocarpa]
          Length = 442

 Score =  294 bits (753), Expect = 9e-77,   Method: Compositional matrix adjust.
 Identities = 139/412 (33%), Positives = 238/412 (57%), Gaps = 1/412 (0%)

Query: 184 NEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLF 243
           NE +F  +   C     L   + +H   + +GF  +V   +++VD YAK G L  AR++F
Sbjct: 9   NELTFTFLFPACASFYSLLHGKVIHTHFIKSGFDFDVYALTALVDMYAKLGVLMLARQVF 68

Query: 244 DETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALE 303
           DE   RD+ TW ++++GY++ GDME A +LF  MP ++ VSWTT+I+GY++NG+  KALE
Sbjct: 69  DEMTVRDIPTWNSLIAGYSRSGDMEGALELFKLMPSRSVVSWTTMISGYSQNGMYTKALE 128

Query: 304 LFTRMMILR-IRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMY 362
           +F +M   + +RPN+ T +S   ACA + +L+ G+++  +        N  V ++L++MY
Sbjct: 129 MFLKMEKDKEVRPNEVTIASVFSACAKLGALEVGERIESYARDNGLMKNLYVSNTLLEMY 188

Query: 363 SKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITL 422
           ++CG ++  R VF+    + N   WN+M+  L  HG   +A++L+  M+   ++PD +T 
Sbjct: 189 ARCGKIDAARHVFNEIGKRRNLCSWNSMMMGLAVHGRSNEALQLYDQMLGEGIEPDDVTF 248

Query: 423 AVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMP 482
             ++ ACTH GLV +G   F+SM  +  I+P  EH+ C+++LL +AG   +  + ++ MP
Sbjct: 249 VGLILACTHGGLVAKGWQLFQSMETNFSIVPKLEHYGCMVDLLGRAGELQEAYDLVKSMP 308

Query: 483 YEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEK 542
            + DS +W  L G C  H N++      + L    P +   + +L +IY++  +   V K
Sbjct: 309 MKPDSVIWGTLLGACSFHSNVEFAEIAAESLFQVEPWNPGNYVILCNIYASAQRWDGVAK 368

Query: 543 VRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQM 594
           +R+L+   Q  K    S IE E ++H F V D  HP    +Y++L +++ +M
Sbjct: 369 LRKLMKGGQITKAAGYSVIEGEGEIHKFIVEDKSHPRHYEIYALLNEISTKM 420



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 96/350 (27%), Positives = 172/350 (49%), Gaps = 41/350 (11%)

Query: 54  TLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDK 113
           T  F+   CA   SL  GK +H H   +        L+  L+ MY K G  + AR+VFD+
Sbjct: 12  TFTFLFPACASFYSLLHGKVIHTHFIKSGFDFDVYALTA-LVDMYAKLGVLMLARQVFDE 70

Query: 114 IPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLK-F 172
           + V+++ ++N++++GY+  G M+ A  LF  M  R VVSW TMI GY+++G   + L+ F
Sbjct: 71  MTVRDIPTWNSLIAGYSRSGDMEGALELFKLMPSRSVVSWTTMISGYSQNGMYTKALEMF 130

Query: 173 YKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAK 232
            K+ +   +  NE + A + + C KL  L++  ++       G + N+ +S+++++ YA+
Sbjct: 131 LKMEKDKEVRPNEVTIASVFSACAKLGALEVGERIESYARDNGLMKNLYVSNTLLEMYAR 190

Query: 233 CGELSDARRLFDETDA-RDVLTWTTMVSGYAKLGDMESASKLFNEM----PEKNPVSWTT 287
           CG++  AR +F+E    R++ +W +M+ G A  G    A +L+++M     E + V++  
Sbjct: 191 CGKIDAARHVFNEIGKRRNLCSWNSMMMGLAVHGRSNEALQLYDQMLGEGIEPDDVTFVG 250

Query: 288 LIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTN 347
           LI   T  GL  K  +LF  M        +  FS        +  L+H            
Sbjct: 251 LILACTHGGLVAKGWQLFQSM--------ETNFS-------IVPKLEH------------ 283

Query: 348 FRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQH 397
                     ++D+  + G L +   +      K +S++W T++ A + H
Sbjct: 284 -------YGCMVDLLGRAGELQEAYDLVKSMPMKPDSVIWGTLLGACSFH 326



 Score =  102 bits (253), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 75/277 (27%), Positives = 127/277 (45%), Gaps = 38/277 (13%)

Query: 308 MMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGC 367
           M++    PN+ TF+    ACAS  SL HGK +H   I++ F  +   +++L+DMY+K G 
Sbjct: 1   MLLKGCPPNELTFTFLFPACASFYSLLHGKVIHTHFIKSGFDFDVYALTALVDMYAKLGV 60

Query: 368 LNDGRQVFDLTDNKE----NSML--------------------------WNTMISALTQH 397
           L   RQVFD    ++    NS++                          W TMIS  +Q+
Sbjct: 61  LMLARQVFDEMTVRDIPTWNSLIAGYSRSGDMEGALELFKLMPSRSVVSWTTMISGYSQN 120

Query: 398 GYDEQAIRLFHDMVR-SSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQE 456
           G   +A+ +F  M +   V+P+++T+A + +AC   G ++ G    ES   D G++ N  
Sbjct: 121 GMYTKALEMFLKMEKDKEVRPNEVTIASVFSACAKLGALEVG-ERIESYARDNGLMKNLY 179

Query: 457 HHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQ 516
               L+E+ A+ G  D   +   ++    +   WN++     +HG  +   ++ DQ++ +
Sbjct: 180 VSNTLLEMYARCGKIDAARHVFNEIGKRRNLCSWNSMMMGLAVHGRSNEALQLYDQMLGE 239

Query: 517 N--PQSSATHGLLSSIYSALGKGRLVEKVRQLINERQ 551
              P      GL+     A   G LV K  QL    +
Sbjct: 240 GIEPDDVTFVGLI----LACTHGGLVAKGWQLFQSME 272



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 71/291 (24%), Positives = 128/291 (43%), Gaps = 52/291 (17%)

Query: 13  KNLPNNCLIQSFLSLIS----KGQLSEAISS-LDLLAQRGIRLPAETLAFILQQCAESKS 67
           K +P+  ++ S+ ++IS     G  ++A+   L +   + +R    T+A +   CA+  +
Sbjct: 100 KLMPSRSVV-SWTTMISGYSQNGMYTKALEMFLKMEKDKEVRPNEVTIASVFSACAKLGA 158

Query: 68  LKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKI-PVKNLFSYNNML 126
           L++G+R+  + +         ++SN L+ MY +CG    AR VF++I   +NL S+N+M+
Sbjct: 159 LEVGERIESYAR-DNGLMKNLYVSNTLLEMYARCGKIDAARHVFNEIGKRRNLCSWNSMM 217

Query: 127 SGYANLGMMKHARNLFDNM----AERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSIS 182
            G A  G    A  L+D M     E D V++  +I+     G V +G + ++     S+ 
Sbjct: 218 MGLAVHGRSNEALQLYDQMLGEGIEPDDVTFVGLILACTHGGLVAKGWQLFQ-----SME 272

Query: 183 CNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRL 242
            N        +I  KLE                          +VD   + GEL +A  L
Sbjct: 273 TN-------FSIVPKLEHY----------------------GCMVDLLGRAGELQEAYDL 303

Query: 243 FDETDAR-DVLTWTTMVSGYAKLGDME----SASKLFNEMPEKNPVSWTTL 288
                 + D + W T++   +   ++E    +A  LF   P  NP ++  L
Sbjct: 304 VKSMPMKPDSVIWGTLLGACSFHSNVEFAEIAAESLFQVEP-WNPGNYVIL 353


>gi|224125246|ref|XP_002319538.1| predicted protein [Populus trichocarpa]
 gi|222857914|gb|EEE95461.1| predicted protein [Populus trichocarpa]
          Length = 577

 Score =  294 bits (752), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 179/586 (30%), Positives = 291/586 (49%), Gaps = 72/586 (12%)

Query: 12  RKNLPNNCLIQSFLSLISKGQLSEAISSLDLLAQRGI-RLPAETLAFILQQCAESKSLKL 70
           R  +  N +I  FL     G           +   G  RL   TL  IL  C   +   +
Sbjct: 21  RDTVSWNIMISGFLK---DGSFDVGFGFFKQMQSLGFYRLDQATLTTILSACDRPELGFV 77

Query: 71  GKRVHLHLKLT--QRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSG 128
            K VH    L   QR+     + N LI+ YFKCG                 FS + M   
Sbjct: 78  NKMVHCLAVLNGFQREIS---VGNALITSYFKCG-----------------FSSSGM--- 114

Query: 129 YANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSF 188
                       +FD M ER+V++W  +I G  +S    + L+ +  +    +  N  ++
Sbjct: 115 -----------QVFDEMLERNVITWTAIISGLVQSELYRDSLRLFVEMTNGLVEPNSLTY 163

Query: 189 AGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDA 248
              L  C  L+ L+   Q+HG+V   G  S+  + S+++D Y+KCG + D  ++F     
Sbjct: 164 LSSLMACSGLQALREGCQIHGRVWKLGLQSDFCVESALMDMYSKCGSMGDTLQIF----- 218

Query: 249 RDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRM 308
                              ESA +L       + VS T ++AG+ +NG  ++A++ F +M
Sbjct: 219 -------------------ESAGQL-------DKVSMTIILAGFAQNGFEEEAMQFFVKM 252

Query: 309 MILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCL 368
           +      + +  S+ L    +  SL  G+Q+H  +I+ +F SN  V + LI+MYSKCG L
Sbjct: 253 LEAGTEIDSNMVSAVLGVFGADTSLGLGQQIHSLVIKRSFGSNPFVGNGLINMYSKCGDL 312

Query: 369 NDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNA 428
            D  +VF       NS+ WN+MI+A  +HG   +A++L+ +M    V+P  +T   +L+A
Sbjct: 313 EDSTKVFSRMPCM-NSVSWNSMIAAFARHGDGSRALQLYKEMRLKGVEPTDVTFLSLLHA 371

Query: 429 CTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSY 488
           C+H GLV++G+ + +SMT    + P  EH+AC++++L +AG  ++    +E +P + D  
Sbjct: 372 CSHVGLVEKGMEFLKSMTEVHKLTPRMEHYACVVDMLGRAGLLNEAKTFIEGLPIKPDVL 431

Query: 489 LWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLIN 548
           +W AL G C IHG+ +MG+   + LI   P+  + + LL++IYS+ G+ +   K  + + 
Sbjct: 432 VWQALLGACGIHGDPEMGKYAAEHLILSAPEKPSPYILLANIYSSKGRWKERAKTIKRMK 491

Query: 549 ERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQM 594
           E    KE  ISWIEIEN +H+F V D +HP  +++Y VL +L G M
Sbjct: 492 EMCVAKETGISWIEIENNLHSFVVEDKMHPQAEIIYGVLAELFGHM 537



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 102/378 (26%), Positives = 183/378 (48%), Gaps = 41/378 (10%)

Query: 129 YANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSI-SCNEFS 187
           YA  G++  A  LFD M  RD VSWN MI G+ K G+ + G  F+K ++       ++ +
Sbjct: 2   YAKNGVLTDAAKLFDEMPMRDTVSWNIMISGFLKDGSFDVGFGFFKQMQSLGFYRLDQAT 61

Query: 188 FAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETD 247
              IL+ C + E   + + VH   ++ GF   + + ++++ +Y KCG  S   ++FDE  
Sbjct: 62  LTTILSACDRPELGFVNKMVHCLAVLNGFQREISVGNALITSYFKCGFSSSGMQVFDEML 121

Query: 248 ARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTR 307
            R+V+TWT ++SG  +       S+L+ +                        +L LF  
Sbjct: 122 ERNVITWTAIISGLVQ-------SELYRD------------------------SLRLFVE 150

Query: 308 MMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGC 367
           M    + PN  T+ S L AC+ + +L+ G Q+HG + +   +S+  V S+L+DMYSKCG 
Sbjct: 151 MTNGLVEPNSLTYLSSLMACSGLQALREGCQIHGRVWKLGLQSDFCVESALMDMYSKCGS 210

Query: 368 LNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVIL- 426
           + D  Q+F+ +  + + +    +++   Q+G++E+A++ F  M+ +  + D   ++ +L 
Sbjct: 211 MGDTLQIFE-SAGQLDKVSMTIILAGFAQNGFEEEAMQFFVKMLEAGTEIDSNMVSAVLG 269

Query: 427 --NACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYE 484
              A T  GL Q+      S+        N      LI + ++ G  +       +MP  
Sbjct: 270 VFGADTSLGLGQQ----IHSLVIKRSFGSNPFVGNGLINMYSKCGDLEDSTKVFSRMPC- 324

Query: 485 HDSYLWNALHGVCRIHGN 502
            +S  WN++      HG+
Sbjct: 325 MNSVSWNSMIAAFARHGD 342


>gi|225457355|ref|XP_002281803.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 553

 Score =  294 bits (752), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 166/530 (31%), Positives = 287/530 (54%), Gaps = 19/530 (3%)

Query: 90  LSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNN-----MLSGYANLGMMKHARNLFDN 144
           L  H  S+   C +    +++  +I V N FS  N     +LS Y   G + +A  +F+ 
Sbjct: 17  LQQHFFSLLQTCDTIKKLKQIHTQIIV-NGFSQKNFLLVKLLSFYITSGNLLNAHKVFER 75

Query: 145 MAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLT 204
           +       WN MI G+++S    + ++ Y  +       NEF+++ ++  C +   L+  
Sbjct: 76  IENPSTTVWNQMIRGHSQSETPHKLVELYNRMVEAEAEPNEFTYSFLIGGCARSRLLREG 135

Query: 205 RQVHGQVLVTGFLSNVVISSSIVDAYAKCGE---LSDARRLFDETDARDVLTWTTMVSGY 261
            QVHG+V+  G+ +NV + +S+V+ YA  G    +  ARR+FDE   R++++W ++++GY
Sbjct: 136 EQVHGRVVANGYCTNVFVRTSLVNLYAIAGGYDGVRKARRVFDEIVDRNIVSWNSLLAGY 195

Query: 262 AKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFS 321
            + GD++ A ++F+EMPE+N VSWTT+IAG  + G  ++AL LF  M    ++ +Q    
Sbjct: 196 VRCGDVDGARRIFDEMPERNVVSWTTMIAGCAQIGRCKQALHLFHEMRRAGVKLDQVALV 255

Query: 322 SCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVM----SSLIDMYSKCGCLNDGRQVFDL 377
           + L ACA +  LK G  +H ++       N  ++    +SLI MY+ CG ++   +VF +
Sbjct: 256 AALSACAELGDLKLGTWIHSYIDERLHAGNQPLLVSLNNSLIHMYASCGVIDKAYKVF-I 314

Query: 378 TDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSV---KPDKITLAVILNACTHSGL 434
              + +++ W +MI+   + G+ E+A+ +F  M R      +PD IT   +L AC+H+G 
Sbjct: 315 GMQQRSTISWTSMITGFAKQGHAEEALGVFQWMQRLGTDEGRPDGITFIGVLCACSHAGF 374

Query: 435 VQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALH 494
           V +G  +FE M    GI+P  EH+ C+++LL++AG  D+    +E MP + +  +W AL 
Sbjct: 375 VDQGRHFFECMNKKWGIVPRIEHYGCMVDLLSRAGFLDEAHRLIESMPMKPNDAVWGALL 434

Query: 495 GVCRIHGNIDMGRKVVDQL-IDQNPQSSATH-GLLSSIYSALGKGRLVEKVRQLINERQF 552
           G CRIH N ++   V  +L ++  P  +A +  LLS++Y+   + + V  VRQ + E   
Sbjct: 435 GGCRIHKNAELASHVAQKLALELKPDQAAGYLVLLSNVYATAKRWQDVALVRQKMVEIGV 494

Query: 553 KKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQMGEDAPSLD 602
           +K    SW++I   VH F   D  H     +Y +L ++  Q   +   LD
Sbjct: 495 RKPAGRSWVQINGVVHDFVAGDWTHKHASSVYEMLSKITRQAKLEGYKLD 544



 Score = 59.3 bits (142), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 41/158 (25%), Positives = 76/158 (48%), Gaps = 10/158 (6%)

Query: 31  GQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHL--KLTQRKTPTT 88
           G+  +A+     + + G++L    L   L  CAE   LKLG  +H ++  +L     P  
Sbjct: 230 GRCKQALHLFHEMRRAGVKLDQVALVAALSACAELGDLKLGTWIHSYIDERLHAGNQPLL 289

Query: 89  F-LSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNM-- 145
             L+N LI MY  CG    A KVF  +  ++  S+ +M++G+A  G  + A  +F  M  
Sbjct: 290 VSLNNSLIHMYASCGVIDKAYKVFIGMQQRSTISWTSMITGFAKQGHAEEALGVFQWMQR 349

Query: 146 -----AERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRR 178
                   D +++  ++   + +G V++G  F++ + +
Sbjct: 350 LGTDEGRPDGITFIGVLCACSHAGFVDQGRHFFECMNK 387


>gi|147819178|emb|CAN71462.1| hypothetical protein VITISV_018656 [Vitis vinifera]
          Length = 787

 Score =  294 bits (752), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 172/559 (30%), Positives = 278/559 (49%), Gaps = 93/559 (16%)

Query: 33  LSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSN 92
             EA+     +   G +    T A + + C   ++  +GK VH    L  R     ++  
Sbjct: 221 FKEALKLFSQMRMVGFKPNNFTFASVFKACLGLEAFDVGKSVH-GCALKSRYELDLYVGV 279

Query: 93  HLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVS 152
            L+ +Y K G D+D                               AR  F+ + ++DV+ 
Sbjct: 280 ALLDLYTKSG-DID------------------------------DARXAFEEIPKKDVIP 308

Query: 153 WNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVL 212
           W+ MI  YA+S   +E ++ +  +R+  +  N+F+FA +L  C  +E L L  Q+H  V+
Sbjct: 309 WSFMIARYAQSDQSKEAVEMFFQMRQALVLPNQFTFASVLQACATMEGLNLGNQIHCHVI 368

Query: 213 VTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDAR-DVLTWTTMVSGYAKLGDMESAS 271
             G  S+V +S++++D YAKCG + ++  LF E+  R DV  W T++ G+ +LGD     
Sbjct: 369 KIGLHSDVFVSNALMDVYAKCGRMENSMXLFAESPHRNDVTPWNTVIVGHVQLGD----- 423

Query: 272 KLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIV 331
                                     G+KAL LF  M+  R++  + T+SS L ACAS+ 
Sbjct: 424 --------------------------GEKALRLFLNMLEYRVQATEVTYSSALRACASLA 457

Query: 332 SLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMI 391
           +L+ G Q+H   ++T F  + +V ++LIDMY+KCG + D R VFDL  NK++ + WN MI
Sbjct: 458 ALEPGLQIHSLTVKTTFDKDIVVTNALIDMYAKCGSIKDARLVFDLM-NKQDEVSWNAMI 516

Query: 392 SALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGI 451
           S  + HG                             AC ++GL+ +G  YF SM  D GI
Sbjct: 517 SGYSMHGL----------------------------ACANAGLLDQGQAYFTSMIQDHGI 548

Query: 452 IPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVD 511
            P  EH+ C++ LL + G  D+ +  ++++P++    +W AL G C IH +I++GR    
Sbjct: 549 EPCIEHYTCMVWLLGRGGHLDKAVKLIDEIPFQPSVMVWRALLGACVIHNDIELGRISAQ 608

Query: 512 QLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFS 571
            +++  PQ  ATH LLS++Y+   +   V  VR+ +  +  KKE  +SWIE +  VH+F+
Sbjct: 609 HVLEMEPQDKATHVLLSNMYATAKRWDNVASVRKNMKRKGVKKEPGLSWIESQGTVHSFT 668

Query: 572 VSDSLHPMRDVLYSVLEQL 590
           V D+ HP   V+  +LE L
Sbjct: 669 VGDTSHPEVRVINGMLEWL 687



 Score =  180 bits (457), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 119/447 (26%), Positives = 213/447 (47%), Gaps = 49/447 (10%)

Query: 118 NLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLR 177
           N F    ++  Y+  G +  AR +FD +  +D+VSW  M+  +A++   +E LK +  +R
Sbjct: 173 NAFVGTALIDAYSVCGRVDVAREVFDGILYKDMVSWTGMVTCFAENDCFKEALKLFSQMR 232

Query: 178 RFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELS 237
                 N F+FA +   C+ LE   + + VHG  L + +  ++ +  +++D Y K G   
Sbjct: 233 MVGFKPNNFTFASVFKACLGLEAFDVGKSVHGCALKSRYELDLYVGVALLDLYTKSG--- 289

Query: 238 DARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGL 297
                                       D++ A   F E+P+K+ + W+ +IA Y ++  
Sbjct: 290 ----------------------------DIDDARXAFEEIPKKDVIPWSFMIARYAQSDQ 321

Query: 298 GQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSS 357
            ++A+E+F +M    + PNQ TF+S L ACA++  L  G Q+H  +I+    S+  V ++
Sbjct: 322 SKEAVEMFFQMRQALVLPNQFTFASVLQACATMEGLNLGNQIHCHVIKIGLHSDVFVSNA 381

Query: 358 LIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKP 417
           L+D+Y+KCG + +   +F  + ++ +   WNT+I    Q G  E+A+RLF +M+   V+ 
Sbjct: 382 LMDVYAKCGRMENSMXLFAESPHRNDVTPWNTVIVGHVQLGDGEKALRLFLNMLEYRVQA 441

Query: 418 DKITLAVILNACTHSGLVQEGLTYFE---SMTHDLGIIPNQEHHACLIELLAQAGCSDQL 474
            ++T +  L AC     ++ GL         T D  I+        LI++ A+ G     
Sbjct: 442 TEVTYSSALRACASLAALEPGLQIHSLTVKTTFDKDIVVTNA----LIDMYAKCGSIKDA 497

Query: 475 MNQLEKMPYEHDSYLWNA------LHGV-CRIHGNIDMGRKVVDQLI-DQNPQSSATHGL 526
               + M  + D   WNA      +HG+ C   G +D G+     +I D   +    H  
Sbjct: 498 RLVFDLMN-KQDEVSWNAMISGYSMHGLACANAGLLDQGQAYFTSMIQDHGIEPCIEH-- 554

Query: 527 LSSIYSALGKGRLVEKVRQLINERQFK 553
            + +   LG+G  ++K  +LI+E  F+
Sbjct: 555 YTCMVWLLGRGGHLDKAVKLIDEIPFQ 581



 Score =  158 bits (400), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 102/392 (26%), Positives = 191/392 (48%), Gaps = 44/392 (11%)

Query: 118 NLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLR 177
           +LF++N +L+ Y     +  A  LFD M ER+ +S+ T+I GYA+S    E ++ +  L 
Sbjct: 72  DLFAWNILLNMYVKSDFLCDASKLFDEMPERNTISFVTLIQGYAESVRFLEAIELFVRLH 131

Query: 178 RFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELS 237
           R     N F F  IL + V ++  +L   +H  +   G  SN  + ++++DAY+ CG + 
Sbjct: 132 REGHELNPFVFTTILKLLVSMDCGELGWGIHACIFKLGHESNAFVGTALIDAYSVCGRV- 190

Query: 238 DARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGL 297
                                         + A ++F+ +  K+ VSWT ++  +  N  
Sbjct: 191 ------------------------------DVAREVFDGILYKDMVSWTGMVTCFAENDC 220

Query: 298 GQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSS 357
            ++AL+LF++M ++  +PN  TF+S   AC  + +   GK VHG  +++ +  +  V  +
Sbjct: 221 FKEALKLFSQMRMVGFKPNNFTFASVFKACLGLEAFDVGKSVHGCALKSRYELDLYVGVA 280

Query: 358 LIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKP 417
           L+D+Y+K G ++D R  F+    K++ + W+ MI+   Q    ++A+ +F  M ++ V P
Sbjct: 281 LLDLYTKSGDIDDARXAFEEIP-KKDVIPWSFMIARYAQSDQSKEAVEMFFQMRQALVLP 339

Query: 418 DKITLAVILNACTHSGLVQEGLTYFESM---THDLGIIPNQEHHACLIELLAQAGCSDQL 474
           ++ T A +L AC       EGL     +      +G+  +      L+++ A+ G  +  
Sbjct: 340 NQFTFASVLQACA----TMEGLNLGNQIHCHVIKIGLHSDVFVSNALMDVYAKCGRMENS 395

Query: 475 MNQLEKMPYEHDSYLWNALHGVCRIHGNIDMG 506
           M    + P+ +D   WN +     I G++ +G
Sbjct: 396 MXLFAESPHRNDVTPWNTV-----IVGHVQLG 422



 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 79/331 (23%), Positives = 150/331 (45%), Gaps = 51/331 (15%)

Query: 13  KNLPNNCLIQSFLSLISKGQLSEAISSLDLLAQ--RGIRLPAE-TLAFILQQCAESKSLK 69
           + +P   +I     +    Q  ++  ++++  Q  + + LP + T A +LQ CA  + L 
Sbjct: 299 EEIPKKDVIPWSFMIARYAQSDQSKEAVEMFFQMRQALVLPNQFTFASVLQACATMEGLN 358

Query: 70  LGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKN-LFSYNNMLSG 128
           LG ++H H+ +        F+SN L+ +Y KCG   ++  +F + P +N +  +N ++ G
Sbjct: 359 LGNQIHCHV-IKIGLHSDVFVSNALMDVYAKCGRMENSMXLFAESPHRNDVTPWNTVIVG 417

Query: 129 YANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSF 188
           +  LG  + A  LF NM E                               + +   E ++
Sbjct: 418 HVQLGDGEKALRLFLNMLE-------------------------------YRVQATEVTY 446

Query: 189 AGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDA 248
           +  L  C  L  L+   Q+H   + T F  ++V++++++D YAKCG + DAR +FD  + 
Sbjct: 447 SSALRACASLAALEPGLQIHSLTVKTTFDKDIVVTNALIDMYAKCGSIKDARLVFDLMNK 506

Query: 249 RDVLTWTTMVSGY-------AKLGDMESASKLFNEMPEKNPVS-----WTTLIAGYTRNG 296
           +D ++W  M+SGY       A  G ++     F  M + + +      +T ++    R G
Sbjct: 507 QDEVSWNAMISGYSMHGLACANAGLLDQGQAYFTSMIQDHGIEPCIEHYTCMVWLLGRGG 566

Query: 297 LGQKALELFTRMMILRIRPNQHTFSSCLCAC 327
              KA++L      +  +P+   + + L AC
Sbjct: 567 HLDKAVKLIDE---IPFQPSVMVWRALLGAC 594



 Score = 89.0 bits (219), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 81/330 (24%), Positives = 139/330 (42%), Gaps = 65/330 (19%)

Query: 184 NEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLF 243
           N  ++A  L  C++ +E    + +H ++L  G   ++   + +++ Y K   L DA +LF
Sbjct: 37  NSHAYANALQDCIQKDEPSRGKGLHCEILKRGGCLDLFAWNILLNMYVKSDFLCDASKLF 96

Query: 244 DETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALE 303
           DE   R+ +++ T++ GYA     ES   L                          +A+E
Sbjct: 97  DEMPERNTISFVTLIQGYA-----ESVRFL--------------------------EAIE 125

Query: 304 LFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYS 363
           LF R+       N   F++ L    S+   + G  +H  + +    SN  V ++LID YS
Sbjct: 126 LFVRLHREGHELNPFVFTTILKLLVSMDCGELGWGIHACIFKLGHESNAFVGTALIDAYS 185

Query: 364 KCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLA 423
            CG ++  R+VFD    K+  + W  M++   ++   ++A++LF  M     KP+  T A
Sbjct: 186 VCGRVDVAREVFDGILYKD-MVSWTGMVTCFAENDCFKEALKLFSQMRMVGFKPNNFTFA 244

Query: 424 VILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPY 483
            +  AC        GL  F     D+G    +  H C +                 K  Y
Sbjct: 245 SVFKACL-------GLEAF-----DVG----KSVHGCAL-----------------KSRY 271

Query: 484 EHDSYLWNALHGVCRIHGNIDMGRKVVDQL 513
           E D Y+  AL  +    G+ID  R   +++
Sbjct: 272 ELDLYVGVALLDLYTKSGDIDDARXAFEEI 301


>gi|147818273|emb|CAN64718.1| hypothetical protein VITISV_026719 [Vitis vinifera]
          Length = 499

 Score =  294 bits (752), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 153/445 (34%), Positives = 242/445 (54%), Gaps = 2/445 (0%)

Query: 135 MKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTI 194
           + HAR LFD +       +NTM   YA S      L  ++ + R     + ++F  +L  
Sbjct: 37  LHHARLLFDAVYHPSTYLYNTMFRVYAASPTPLHALLLHRHMFRHGPPPDTYTFPFLLKA 96

Query: 195 CVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTW 254
           C  L  L   +++H Q L  G   +V + +S++  Y     +  ARR+FD    RD+ +W
Sbjct: 97  CSALAHLLKGQELHCQALKFGLGGHVFVENSLIHLYGSNSRMDSARRVFDGMGYRDIASW 156

Query: 255 TTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIR 314
           TT+++ YA    +E+A K+F+EMPE++ VS++ ++A Y R    ++ALELF  +  ++I 
Sbjct: 157 TTLLACYANSCSVEAARKVFDEMPERSVVSYSAMLAAYVRGNRFREALELFRELFSVKIE 216

Query: 315 PNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNF-RSNTIVMSSLIDMYSKCGCLNDGRQ 373
           P+     S LCACA++ +L  G+ V+ F+  +     ++ + ++LIDM+ KCG +     
Sbjct: 217 PSDSCVMSVLCACANLGALDVGRWVYSFVCHSKGDYVDSRIATALIDMFFKCGSIEHALL 276

Query: 374 VFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSG 433
           VF+    K     W  M+S L  HG  EQ I  F  MV S +KPD++T   +L+ C+HSG
Sbjct: 277 VFEGAKEKHVGE-WTAMLSGLAMHGLGEQLIEAFEKMVDSGIKPDEVTFVALLSGCSHSG 335

Query: 434 LVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNAL 493
           LV EGL YF+ M  D G+ P  EH  C+++LL +AG  DQ M  + +MP+E ++ +W AL
Sbjct: 336 LVNEGLYYFDRMESDFGVEPTVEHFGCVVDLLGRAGLIDQAMQLISEMPFEPNAAIWGAL 395

Query: 494 HGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFK 553
              CR++ N+++G      LI   P + A +  L S+Y   G+   VEKV+  + E   +
Sbjct: 396 LNACRVYKNVEVGELAAQWLIKDEPWNGALYMTLLSLYREAGRWDEVEKVKLKMKEVGCR 455

Query: 554 KEQAISWIEIENKVHAFSVSDSLHP 578
           K    S IE+    + F V D  HP
Sbjct: 456 KGPGCSLIEVGGICYEFVVGDKSHP 480



 Score =  115 bits (287), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 83/344 (24%), Positives = 156/344 (45%), Gaps = 38/344 (11%)

Query: 54  TLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDK 113
           T  F+L+ C+    L  G+ +H    L        F+ N LI +Y        AR+VFD 
Sbjct: 89  TFPFLLKACSALAHLLKGQELHCQ-ALKFGLGGHVFVENSLIHLYGSNSRMDSARRVFDG 147

Query: 114 IPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFY 173
           +  +++ S+  +L+ YAN   ++ AR +FD M ER VVS++ M+  Y +     E L+ +
Sbjct: 148 MGYRDIASWTTLLACYANSCSVEAARKVFDEMPERSVVSYSAMLAAYVRGNRFREALELF 207

Query: 174 KVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVT-GFLSNVVISSSIVDAYAK 232
           + L    I  ++     +L  C  L  L + R V+  V  + G   +  I+++++D + K
Sbjct: 208 RELFSVKIEPSDSCVMSVLCACANLGALDVGRWVYSFVCHSKGDYVDSRIATALIDMFFK 267

Query: 233 CGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGY 292
           CG +  A  +F+    + V  WT M+SG A                              
Sbjct: 268 CGSIEHALLVFEGAKEKHVGEWTAMLSGLAM----------------------------- 298

Query: 293 TRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGF-LIRTNFRSN 351
             +GLG++ +E F +M+   I+P++ TF + L  C+    +  G  ++ F  + ++F   
Sbjct: 299 --HGLGEQLIEAFEKMVDSGIKPDEVTFVALLSGCSHSGLVNEG--LYYFDRMESDFGVE 354

Query: 352 TIV--MSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISA 393
             V     ++D+  + G ++   Q+      + N+ +W  +++A
Sbjct: 355 PTVEHFGCVVDLLGRAGLIDQAMQLISEMPFEPNAAIWGALLNA 398


>gi|224122892|ref|XP_002318942.1| predicted protein [Populus trichocarpa]
 gi|222857318|gb|EEE94865.1| predicted protein [Populus trichocarpa]
          Length = 707

 Score =  294 bits (752), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 171/571 (29%), Positives = 286/571 (50%), Gaps = 75/571 (13%)

Query: 102 GSDVDARKV----FDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMI 157
           G + DAR+V         + ++F  +++++ Y  +G +  AR LFD M ER++VSW TMI
Sbjct: 126 GCNFDARQVHVLGIKTASIDDVFVGSSLVNFYCKVGCVFEARKLFDRMPERNLVSWTTMI 185

Query: 158 IGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFL 217
            GYA     +E L  + ++R    + NEF F  +L+  V  E +   +QVH  V+  G L
Sbjct: 186 SGYASKQMAKEALGVFGLMRLVEGNLNEFVFTSVLSALVCPEFVDSGKQVHCVVVKNGVL 245

Query: 218 S-------------------------------NVVISSSIVDAYAKCGELSDARRLFDET 246
                                           N +  S+++  Y++ G+   A +LF + 
Sbjct: 246 EFVSVLNALVTMYAKCGNLNYSLMLFEMCSDKNAITWSALITGYSQAGDSHKALKLFSKM 305

Query: 247 D---------------------------------------ARDVLTWTTMVSGYAKLGDM 267
                                                      + T T +V  YAK G  
Sbjct: 306 HYAGFVPSEFTLVGVLKACSDVAAIEEGKQTHGYLLKSGYETQIYTATALVDMYAKFGFT 365

Query: 268 ESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCAC 327
             A K F+ + E + V WT++IAGY +NG  ++AL ++ RM + +I PN+ T +S L AC
Sbjct: 366 GDARKGFDFLLEPDLVLWTSIIAGYVQNGKNEEALSMYGRMQMRKILPNELTMASVLKAC 425

Query: 328 ASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLW 387
           +++ +L+ GKQ+H   I+        + S+L  MY+KCG L +G  +F     ++  + W
Sbjct: 426 SNLAALEQGKQIHARTIKYGLGPELSIRSALSTMYAKCGSLEEGVLIFRRMLQRD-IVSW 484

Query: 388 NTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTH 447
           N MIS L+Q+G+  +A+ LF +M     KPD IT   +L+AC+H G+V+ G  YF  M  
Sbjct: 485 NAMISGLSQNGHGREALELFEEMRLEGTKPDHITFVTVLSACSHMGIVKRGWAYFNMMFD 544

Query: 448 DLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGR 507
           +  ++P  EH+AC++++L++AG  ++    +E    +H   LW  L   CR H N ++G 
Sbjct: 545 EFCLVPRVEHYACMVDVLSRAGKLNEAKEFIESAIIDHGMCLWRILLPACRNHCNYELGA 604

Query: 508 KVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKV 567
              ++L++   + S+ + LLSSIY+A+G+   V +VR+++  R  +KE   SWIE+++ V
Sbjct: 605 YAGEKLMELGSRESSAYVLLSSIYTAMGRLADVVRVRRMMKVRGVRKETGCSWIELKSHV 664

Query: 568 HAFSVSDSLHPMRDVLYSVLEQLAGQMGEDA 598
           H F V D +HP  + +   + +L   M +D 
Sbjct: 665 HVFVVGDQIHPQIEEIQGAIWRLRKHMKDDG 695



 Score =  167 bits (423), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 126/518 (24%), Positives = 229/518 (44%), Gaps = 109/518 (21%)

Query: 51  PAETLAF--ILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDAR 108
           P +  +F  +L Q A+ KSLK G+ +H H+      +   +L+N+LI  Y KCG    A+
Sbjct: 4   PPQNRSFYNLLIQYADQKSLKKGQILHAHIIKIPYLSSCNYLANNLIKFYAKCGHLHGAK 63

Query: 109 KVFDKIPVKNLFSYNNMLSGYANLG-----------------------------MMKHAR 139
            VF+ +  KN+ SYN ++ G ++ G                                 A 
Sbjct: 64  LVFENLKHKNVVSYNCLIHGLSHNGSKGSNFVLELFRRMIANNILPDAHTFPGVFTAAAL 123

Query: 140 NLFDNMAER-------------DVVSWNTMIIGYAKSGAVEEGLKFYK------------ 174
           NL  N   R             DV   ++++  Y K G V E  K +             
Sbjct: 124 NLGCNFDARQVHVLGIKTASIDDVFVGSSLVNFYCKVGCVFEARKLFDRMPERNLVSWTT 183

Query: 175 -------------------VLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTG 215
                              ++R    + NEF F  +L+  V  E +   +QVH  V+  G
Sbjct: 184 MISGYASKQMAKEALGVFGLMRLVEGNLNEFVFTSVLSALVCPEFVDSGKQVHCVVVKNG 243

Query: 216 FLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFN 275
            L  V + +++V  YAKCG L+ +  LF+    ++ +TW+ +++GY++ GD         
Sbjct: 244 VLEFVSVLNALVTMYAKCGNLNYSLMLFEMCSDKNAITWSALITGYSQAGD--------- 294

Query: 276 EMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKH 335
                                   KAL+LF++M      P++ T    L AC+ + +++ 
Sbjct: 295 ----------------------SHKALKLFSKMHYAGFVPSEFTLVGVLKACSDVAAIEE 332

Query: 336 GKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALT 395
           GKQ HG+L+++ + +     ++L+DMY+K G   D R+ FD    + + +LW ++I+   
Sbjct: 333 GKQTHGYLLKSGYETQIYTATALVDMYAKFGFTGDARKGFDFLL-EPDLVLWTSIIAGYV 391

Query: 396 QHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQ 455
           Q+G +E+A+ ++  M    + P+++T+A +L AC++   +++G     + T   G+ P  
Sbjct: 392 QNGKNEEALSMYGRMQMRKILPNELTMASVLKACSNLAALEQG-KQIHARTIKYGLGPEL 450

Query: 456 EHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNAL 493
              + L  + A+ G  ++ +    +M  + D   WNA+
Sbjct: 451 SIRSALSTMYAKCGSLEEGVLIFRRM-LQRDIVSWNAM 487



 Score = 60.1 bits (144), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 49/187 (26%), Positives = 93/187 (49%), Gaps = 13/187 (6%)

Query: 1   MPSNFSPRGINRKNL-----PNNCLIQSFLS-LISKGQLSEAISSLDLLAQRGIRLPAE- 53
           M + F   G  RK       P+  L  S ++  +  G+  EA+S    +  R I LP E 
Sbjct: 358 MYAKFGFTGDARKGFDFLLEPDLVLWTSIIAGYVQNGKNEEALSMYGRMQMRKI-LPNEL 416

Query: 54  TLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDK 113
           T+A +L+ C+   +L+ GK++H    +     P   + + L +MY KCGS  +   +F +
Sbjct: 417 TMASVLKACSNLAALEQGKQIHAR-TIKYGLGPELSIRSALSTMYAKCGSLEEGVLIFRR 475

Query: 114 IPVKNLFSYNNMLSGYANLGMMKHARNLFDNM----AERDVVSWNTMIIGYAKSGAVEEG 169
           +  +++ S+N M+SG +  G  + A  LF+ M     + D +++ T++   +  G V+ G
Sbjct: 476 MLQRDIVSWNAMISGLSQNGHGREALELFEEMRLEGTKPDHITFVTVLSACSHMGIVKRG 535

Query: 170 LKFYKVL 176
             ++ ++
Sbjct: 536 WAYFNMM 542


>gi|302782465|ref|XP_002973006.1| hypothetical protein SELMODRAFT_98207 [Selaginella moellendorffii]
 gi|300159607|gb|EFJ26227.1| hypothetical protein SELMODRAFT_98207 [Selaginella moellendorffii]
          Length = 698

 Score =  294 bits (752), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 180/580 (31%), Positives = 305/580 (52%), Gaps = 14/580 (2%)

Query: 26  SLISKGQLSEAISSLDLLAQRGIRLPAETLAF--ILQQCAESKSLKLGKRVHLHLKLTQR 83
           + +  G+  EA+     L +    + A+   F  +L  CA  K L+ G  + +H ++ +R
Sbjct: 32  AYVGAGKEQEALCLYRTLVRSSTEIQADAFIFSSVLAACARLKCLEQG--LEIHERIVKR 89

Query: 84  KTPTTF-LSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLF 142
                  L N L++MY KCG    A++VFD+I  +++ S+N M+S  A  G ++ A  ++
Sbjct: 90  GVKQDVGLQNALVTMYAKCGRIDRAKQVFDRITHRDVVSWNAMVSANAEAGHLEVALKIY 149

Query: 143 DNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELK 202
             M   DV+ W+TMI   A +G   E L+ Y+ +   S+  N  + A +L  C +L +L 
Sbjct: 150 QEMVSADVLCWSTMISAEAMAGHDREALELYREMI-LSVRPNASTLATVLAACTRLGDLS 208

Query: 203 LTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARR-LFDETDARDVLTWTTMVSGY 261
               V    + +G   + V+ +++V+ YA+ G++  AR  LFD    R V++W  MV+ +
Sbjct: 209 SGALVRDGAIQSGLDRDAVVGTTLVNLYARFGDVIAAREVLFDSMKDRTVVSWNAMVTAF 268

Query: 262 AKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFS 321
           A+   ++ A KLF EMP+K+ +SW  +IAG+ +NG  ++ALELF RM +  ++P++ T+ 
Sbjct: 269 AQNARVDEAEKLFREMPDKSVISWNAMIAGFGQNGRPKQALELFRRMDLEGLQPSRMTYC 328

Query: 322 SCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNK 381
           S L ACA++ +   G+ +   +       +  V +S+ +MY KCG     RQ F L    
Sbjct: 329 SVLDACANLTASSLGRFICDGMDEA-LAKDISVANSICNMYGKCGLPELARQTF-LEMTY 386

Query: 382 ENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTY 441
            + + W  +I+A +Q+GY  +A+ +F  MV++ V+P+ ITL   L+AC+H  L  EG   
Sbjct: 387 RDVVSWTAIIAAYSQNGYSSEALDIFRIMVQAGVEPNGITLINTLSACSHGALFDEGSDI 446

Query: 442 FESMTHD--LGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRI 499
           F S+      G+  N+ H  C I+LL +AG        + KMP++  +  W +L   CR 
Sbjct: 447 FSSLVSGDYYGVTANESHFLCAIDLLGRAGYLKDAETLITKMPFKAGAVAWTSLLSACRT 506

Query: 500 HGNIDMGRKVVDQLIDQNPQS---SATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQ 556
             ++    +V + L + +  S    A + +LS+IY++ G      K+R  I  +  KK  
Sbjct: 507 FRDLKRAGRVANHLFELDESSIKDPAPYVMLSNIYASAGDRAAEMKLRDQIRIKCRKKLP 566

Query: 557 AISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQMGE 596
             S I I+ + + F   D  HP RD  Y+ L +L  +M E
Sbjct: 567 GKSTITIKGQTNEFYSLDETHPRRDDAYNELRRLFQKMKE 606



 Score =  180 bits (457), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 125/456 (27%), Positives = 219/456 (48%), Gaps = 51/456 (11%)

Query: 129 YANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFS--ISCNEF 186
           Y + G ++ AR +FD+M  R+  SW  +I  Y  +G  +E L  Y+ L R S  I  + F
Sbjct: 2   YRDCGRLEDARAVFDSMPLRNEFSWAIIISAYVGAGKEQEALCLYRTLVRSSTEIQADAF 61

Query: 187 SFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDET 246
            F+ +L  C +L+ L+   ++H +++  G   +V + +++V  YAKCG +  A+++FD  
Sbjct: 62  IFSSVLAACARLKCLEQGLEIHERIVKRGVKQDVGLQNALVTMYAKCGRIDRAKQVFDRI 121

Query: 247 DARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFT 306
             RDV++W  MVS  A+ G +E A K++ EM   + + W+T+I+     G  ++ALEL+ 
Sbjct: 122 THRDVVSWNAMVSANAEAGHLEVALKIYQEMVSADVLCWSTMISAEAMAGHDREALELY- 180

Query: 307 RMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCG 366
           R MIL +RPN  T ++ L AC  +  L  G  V    I++    + +V ++L+++Y++ G
Sbjct: 181 REMILSVRPNASTLATVLAACTRLGDLSSGALVRDGAIQSGLDRDAVVGTTLVNLYARFG 240

Query: 367 CLNDGRQV-FDLTDNKE----NSML--------------------------WNTMISALT 395
            +   R+V FD   ++     N+M+                          WN MI+   
Sbjct: 241 DVIAAREVLFDSMKDRTVVSWNAMVTAFAQNARVDEAEKLFREMPDKSVISWNAMIAGFG 300

Query: 396 QHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQ 455
           Q+G  +QA+ LF  M    ++P ++T   +L+AC +  L    L  F     D  +  + 
Sbjct: 301 QNGRPKQALELFRRMDLEGLQPSRMTYCSVLDACAN--LTASSLGRFICDGMDEALAKDI 358

Query: 456 EHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHG----NIDMGRKVVD 511
                +  +  + G  +       +M Y  D   W A+      +G     +D+ R +V 
Sbjct: 359 SVANSICNMYGKCGLPELARQTFLEMTY-RDVVSWTAIIAAYSQNGYSSEALDIFRIMVQ 417

Query: 512 QLIDQ------NPQSSATHGLL----SSIYSALGKG 537
             ++       N  S+ +HG L    S I+S+L  G
Sbjct: 418 AGVEPNGITLINTLSACSHGALFDEGSDIFSSLVSG 453



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 40/159 (25%), Positives = 76/159 (47%), Gaps = 5/159 (3%)

Query: 361 MYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSS--VKPD 418
           MY  CG L D R VFD    + N   W  +ISA    G +++A+ L+  +VRSS  ++ D
Sbjct: 1   MYRDCGRLEDARAVFDSMPLR-NEFSWAIIISAYVGAGKEQEALCLYRTLVRSSTEIQAD 59

Query: 419 KITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQL 478
               + +L AC     +++GL   E +    G+  +      L+ + A+ G  D+     
Sbjct: 60  AFIFSSVLAACARLKCLEQGLEIHERIVKR-GVKQDVGLQNALVTMYAKCGRIDRAKQVF 118

Query: 479 EKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQN 517
           +++ +  D   WNA+       G++++  K+  +++  +
Sbjct: 119 DRITH-RDVVSWNAMVSANAEAGHLEVALKIYQEMVSAD 156


>gi|297797743|ref|XP_002866756.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297312591|gb|EFH43015.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 649

 Score =  294 bits (752), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 147/445 (33%), Positives = 248/445 (55%), Gaps = 1/445 (0%)

Query: 134 MMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILT 193
            + +A+ +FD     D   WN MI G++ S   E  L  Y+ +   S   N ++F  +L 
Sbjct: 93  FLPYAQIVFDGFDRPDTFLWNLMIRGFSCSDEPERSLLLYQRMLCCSAPHNAYTFPSLLK 152

Query: 194 ICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLT 253
            C  L  L+ T Q+H Q+   G+ ++V   +S++++YA  G    A  LFD     D ++
Sbjct: 153 ACSNLSALEETTQIHAQITKLGYENDVYAVNSLINSYAATGNFKLAHLLFDRIPKPDAVS 212

Query: 254 WTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRI 313
           W +++ GYAK G M+ A  LF +M EKN +SWTT+I+GY + G+ ++AL+LF  M    +
Sbjct: 213 WNSVIKGYAKAGKMDIALTLFRKMVEKNAISWTTMISGYVQAGMHKEALQLFHEMQNSDV 272

Query: 314 RPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQ 373
            P+  + ++ L ACA + +L+ GK +H +L +T  R ++++   LIDMY+KCG + +  +
Sbjct: 273 EPDNVSLANALSACAQLGALEQGKWIHSYLTKTRIRMDSVLGCVLIDMYAKCGDMGEALE 332

Query: 374 VFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSG 433
           VF     K +   W  +IS    HG+  +AI  F +M +  +KP+ IT   +L AC+++G
Sbjct: 333 VFKNIQRK-SVQAWTALISGYAYHGHGREAISKFMEMQKMGIKPNVITFTTVLTACSYTG 391

Query: 434 LVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNAL 493
           LV+EG   F +M  D  + P  EH+ C+++LL++AG  D+    +++MP + ++ +W AL
Sbjct: 392 LVEEGKLIFYNMERDYNLKPTIEHYGCVVDLLSRAGLLDEAKRFIQEMPLKPNAVIWGAL 451

Query: 494 HGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFK 553
              CRIH NI++G ++ + LI  +P     +   ++I++   K     + R+L+ E+   
Sbjct: 452 LKACRIHKNIELGEEIGEILIAIDPYHGGRYVHKANIHAMGKKWDKAAETRRLMKEQGVA 511

Query: 554 KEQAISWIEIENKVHAFSVSDSLHP 578
           K    S I +E   H F   D  HP
Sbjct: 512 KVPGCSTISLEGTTHEFLAGDRSHP 536



 Score =  145 bits (365), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 90/348 (25%), Positives = 164/348 (47%), Gaps = 35/348 (10%)

Query: 52  AETLAFILQQCAESKSLKLGKRVHLHL-KLTQRKTPTTFLSNHLISMYFKCGSDVDARKV 110
           A T   +L+ C+   +L+   ++H  + KL        +  N LI+ Y   G+   A  +
Sbjct: 144 AYTFPSLLKACSNLSALEETTQIHAQITKLGYEND--VYAVNSLINSYAATGNFKLAHLL 201

Query: 111 FDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGL 170
           FD+IP  +  S+N+++ GYA  G M  A  LF  M E++ +SW TMI GY ++G  +E L
Sbjct: 202 FDRIPKPDAVSWNSVIKGYAKAGKMDIALTLFRKMVEKNAISWTTMISGYVQAGMHKEAL 261

Query: 171 KFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAY 230
           + +  ++   +  +  S A  L+ C +L  L+  + +H  +  T    + V+   ++D Y
Sbjct: 262 QLFHEMQNSDVEPDNVSLANALSACAQLGALEQGKWIHSYLTKTRIRMDSVLGCVLIDMY 321

Query: 231 AKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIA 290
           AKCG++ +A  +F     + V  WT ++SGYA                            
Sbjct: 322 AKCGDMGEALEVFKNIQRKSVQAWTALISGYA---------------------------- 353

Query: 291 GYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRT-NFR 349
               +G G++A+  F  M  + I+PN  TF++ L AC+    ++ GK +   + R  N +
Sbjct: 354 ---YHGHGREAISKFMEMQKMGIKPNVITFTTVLTACSYTGLVEEGKLIFYNMERDYNLK 410

Query: 350 SNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQH 397
                   ++D+ S+ G L++ ++       K N+++W  ++ A   H
Sbjct: 411 PTIEHYGCVVDLLSRAGLLDEAKRFIQEMPLKPNAVIWGALLKACRIH 458



 Score = 62.0 bits (149), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 52/179 (29%), Positives = 92/179 (51%), Gaps = 12/179 (6%)

Query: 12  RKNLPNNCLIQSFLSLIS----KGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKS 67
           RK +  N +  S+ ++IS     G   EA+     +    +     +LA  L  CA+  +
Sbjct: 234 RKMVEKNAI--SWTTMISGYVQAGMHKEALQLFHEMQNSDVEPDNVSLANALSACAQLGA 291

Query: 68  LKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLS 127
           L+ GK +H +L  T+ +   + L   LI MY KCG   +A +VF  I  K++ ++  ++S
Sbjct: 292 LEQGKWIHSYLTKTRIRM-DSVLGCVLIDMYAKCGDMGEALEVFKNIQRKSVQAWTALIS 350

Query: 128 GYANLGMMKHARNLFDNMA----ERDVVSWNTMIIGYAKSGAVEEG-LKFYKVLRRFSI 181
           GYA  G  + A + F  M     + +V+++ T++   + +G VEEG L FY + R +++
Sbjct: 351 GYAYHGHGREAISKFMEMQKMGIKPNVITFTTVLTACSYTGLVEEGKLIFYNMERDYNL 409


>gi|6522552|emb|CAB61996.1| putative protein [Arabidopsis thaliana]
          Length = 1229

 Score =  294 bits (752), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 174/563 (30%), Positives = 285/563 (50%), Gaps = 50/563 (8%)

Query: 78  LKLTQRKTP--TTFLSNHLISMYFKCGSDVDA-RKVFDKIPVKNLFSYNNM----LSGYA 130
           L+L Q K+P  T FL   ++  Y     D+   R V  +I +++L   +++    +  YA
Sbjct: 31  LELDQ-KSPQETVFLLGQVLDTY----PDIRTLRTVHSRIILEDLRCNSSLGVKLMRAYA 85

Query: 131 NLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAG 190
           +L  +  AR +FD + ER+V+  N MI  Y  +G   EG+K +  +   ++  + ++F  
Sbjct: 86  SLKDVASARKVFDEIPERNVIIINVMIRSYVNNGFYGEGVKVFGTMCGCNVRPDHYTFPC 145

Query: 191 ILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARD 250
           +L  C     + + R++HG     G  S + + + +V  Y KCG LS+AR + DE   RD
Sbjct: 146 VLKACSCSGTIVIGRKIHGSATKVGLSSTLFVGNGLVSMYGKCGFLSEARLVLDEMSRRD 205

Query: 251 VLTWTTMVSGYAK----------LGDMESAS---------------------------KL 273
           V++W ++V GYA+            +MES                              +
Sbjct: 206 VVSWNSLVVGYAQNQRFDDALEVCREMESVKISHDAGTMASLLPAVSNTTTENVMYVKDM 265

Query: 274 FNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSL 333
           F +M +K+ VSW  +I  Y +N +  +A+EL++RM      P+  + +S L AC    +L
Sbjct: 266 FFKMGKKSLVSWNVMIGVYMKNAMPVEAVELYSRMEADGFEPDAVSITSVLPACGDTSAL 325

Query: 334 KHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISA 393
             GK++HG++ R     N ++ ++LIDMY+KCGCL   R VF+   ++ + + W  MISA
Sbjct: 326 SLGKKIHGYIERKKLIPNLLLENALIDMYAKCGCLEKARDVFENMKSR-DVVSWTAMISA 384

Query: 394 LTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIP 453
               G    A+ LF  +  S + PD I     L AC+H+GL++EG + F+ MT    I P
Sbjct: 385 YGFSGRGCDAVALFSKLQDSGLVPDSIAFVTTLAACSHAGLLEEGRSCFKLMTDHYKITP 444

Query: 454 NQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQL 513
             EH AC+++LL +AG   +    ++ M  E +  +W AL G CR+H + D+G    D+L
Sbjct: 445 RLEHLACMVDLLGRAGKVKEAYRFIQDMSMEPNERVWGALLGACRVHSDTDIGLLAADKL 504

Query: 514 IDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVS 573
               P+ S  + LLS+IY+  G+   V  +R ++  +  KK    S +E+   +H F V 
Sbjct: 505 FQLAPEQSGYYVLLSNIYAKAGRWEEVTNIRNIMKSKGLKKNPGASNVEVNRIIHTFLVG 564

Query: 574 DSLHPMRDVLYSVLEQLAGQMGE 596
           D  HP  D +Y  L+ L  +M E
Sbjct: 565 DRSHPQSDEIYRELDVLVKKMKE 587



 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 94/420 (22%), Positives = 181/420 (43%), Gaps = 77/420 (18%)

Query: 18  NCLIQSFLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLH 77
           N +I+S+   ++ G   E +     +    +R    T   +L+ C+ S ++ +G+++H  
Sbjct: 109 NVMIRSY---VNNGFYGEGVKVFGTMCGCNVRPDHYTFPCVLKACSCSGTIVIGRKIHGS 165

Query: 78  LKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYA------- 130
                  + T F+ N L+SMY KCG   +AR V D++  +++ S+N+++ GYA       
Sbjct: 166 ATKVGLSS-TLFVGNGLVSMYGKCGFLSEARLVLDEMSRRDVVSWNSLVVGYAQNQRFDD 224

Query: 131 ---------------NLGMMK---------------HARNLFDNMAERDVVSWNTMIIGY 160
                          + G M                + +++F  M ++ +VSWN MI  Y
Sbjct: 225 ALEVCREMESVKISHDAGTMASLLPAVSNTTTENVMYVKDMFFKMGKKSLVSWNVMIGVY 284

Query: 161 AKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNV 220
            K+    E ++ Y  +       +  S   +L  C     L L +++HG +     + N+
Sbjct: 285 MKNAMPVEAVELYSRMEADGFEPDAVSITSVLPACGDTSALSLGKKIHGYIERKKLIPNL 344

Query: 221 VISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEK 280
           ++ ++++D YAKCG L  AR +F+   +RDV++WT M+S Y                   
Sbjct: 345 LLENALIDMYAKCGCLEKARDVFENMKSRDVVSWTAMISAY------------------- 385

Query: 281 NPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVH 340
                     G++  G G  A+ LF+++    + P+   F + L AC+    L+ G+   
Sbjct: 386 ----------GFS--GRGCDAVALFSKLQDSGLVPDSIAFVTTLAACSHAGLLEEGRSC- 432

Query: 341 GFLIRTNFRSNTIVMSSL---IDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQH 397
            F + T+    T  +  L   +D+  + G + +  +       + N  +W  ++ A   H
Sbjct: 433 -FKLMTDHYKITPRLEHLACMVDLLGRAGKVKEAYRFIQDMSMEPNERVWGALLGACRVH 491


>gi|307136183|gb|ADN34022.1| hypothetical protein [Cucumis melo subsp. melo]
          Length = 773

 Score =  293 bits (751), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 147/460 (31%), Positives = 250/460 (54%), Gaps = 32/460 (6%)

Query: 139 RNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKL 198
           R +F+ M E+D+VSWNT+I G A++G   E L   + +   ++  + F+ + +L +  + 
Sbjct: 254 RKIFEMMPEKDLVSWNTIIAGNARNGLYGETLTMVREMGGANLKPDSFTLSSVLPLIAEN 313

Query: 199 EELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMV 258
            ++   +++HG  +  G  + V ++SS++D YAKC  + D+ R+                
Sbjct: 314 VDISKGKEIHGCSIRQGLDAEVYVASSLIDMYAKCTRVVDSYRV---------------- 357

Query: 259 SGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQH 318
                          F  + E++ +SW ++IAG  +NGL  + L+ F +M++ +I+P  +
Sbjct: 358 ---------------FTLLTERDGISWNSIIAGCVQNGLFDEGLKFFRQMLMAKIKPKSY 402

Query: 319 TFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLT 378
           +FSS + ACA + +L  GKQ+HG++ R  F  N  + SSL+DMY+KCG +   RQ+FD  
Sbjct: 403 SFSSIMPACAHLTTLHLGKQLHGYITRNGFDENIFIASSLVDMYAKCGNIRTARQIFDRM 462

Query: 379 DNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEG 438
             ++  + W  MI     HG+   AI LF  M    ++P+ +    +L AC+H+GLV E 
Sbjct: 463 RLRD-MVSWTAMIMGCALHGHALDAIELFEQMKTEGIEPNYVAFMAVLTACSHAGLVDEA 521

Query: 439 LTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCR 498
             YF SMT D GI P  EH+A + +LL +AG  ++  + +  MP      +W  L   CR
Sbjct: 522 WKYFNSMTLDFGIAPGVEHYAAVSDLLGRAGRLEEAYDFICGMPIGPTGSVWATLLSACR 581

Query: 499 IHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAI 558
           +H N+DM  KV +++++ +P+++  + LL++IYSA  + +   K R  +     +K  A 
Sbjct: 582 VHKNVDMAEKVANRILEVDPKNTGAYILLANIYSAARRWKEAAKWRASLRRTGIRKTPAC 641

Query: 559 SWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQMGEDA 598
           SWIE+ NKV+AF   D  HP  + +   +E L   M ++ 
Sbjct: 642 SWIEVRNKVYAFMAGDESHPCYEKIREAMEVLMELMEKEG 681



 Score =  135 bits (339), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 83/284 (29%), Positives = 138/284 (48%), Gaps = 36/284 (12%)

Query: 31  GQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFL 90
           G   E ++ +  +    ++  + TL+ +L   AE+  +  GK +H    + Q      ++
Sbjct: 279 GLYGETLTMVREMGGANLKPDSFTLSSVLPLIAENVDISKGKEIH-GCSIRQGLDAEVYV 337

Query: 91  SNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDV 150
           ++ LI MY KC   VD+ +VF                                 + ERD 
Sbjct: 338 ASSLIDMYAKCTRVVDSYRVFTL-------------------------------LTERDG 366

Query: 151 VSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQ 210
           +SWN++I G  ++G  +EGLKF++ +    I    +SF+ I+  C  L  L L +Q+HG 
Sbjct: 367 ISWNSIIAGCVQNGLFDEGLKFFRQMLMAKIKPKSYSFSSIMPACAHLTTLHLGKQLHGY 426

Query: 211 VLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESA 270
           +   GF  N+ I+SS+VD YAKCG +  AR++FD    RD+++WT M+ G A  G    A
Sbjct: 427 ITRNGFDENIFIASSLVDMYAKCGNIRTARQIFDRMRLRDMVSWTAMIMGCALHGHALDA 486

Query: 271 SKLFNEMP----EKNPVSWTTLIAGYTRNGLGQKALELFTRMMI 310
            +LF +M     E N V++  ++   +  GL  +A + F  M +
Sbjct: 487 IELFEQMKTEGIEPNYVAFMAVLTACSHAGLVDEAWKYFNSMTL 530



 Score =  132 bits (331), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 104/434 (23%), Positives = 185/434 (42%), Gaps = 63/434 (14%)

Query: 129 YANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSF 188
           Y+++ ++  +  LF+ +     ++W ++I  Y   G   + L  +  +    +  +   F
Sbjct: 52  YSHINLLHDSLRLFNTLHFPPALAWKSVIRCYTSHGLPHKSLGSFIGMLASGLYPDHNVF 111

Query: 189 AGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARR------- 241
             +L  C  L +L L   +HG ++  G   ++   +++++ Y+K   L  + R       
Sbjct: 112 PSVLKACAMLMDLNLGESLHGYIIRVGLDFDLYTGNALMNMYSKLRFLKKSGRQRLGASQ 171

Query: 242 LFDETD--ARDVLTWTTMVSGYA-KLGDME------------------------------ 268
           + DE     R V T + +V     K+ D+E                              
Sbjct: 172 VLDEMTERTRSVRTASVLVGNQGRKVSDIEAFNYDVSCRSREFEAQVLEIDYKPRSEYRE 231

Query: 269 --------------------SASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRM 308
                               S  K+F  MPEK+ VSW T+IAG  RNGL  + L +   M
Sbjct: 232 MEACNLGQQIKDISHSMSVDSVRKIFEMMPEKDLVSWNTIIAGNARNGLYGETLTMVREM 291

Query: 309 MILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCL 368
               ++P+  T SS L   A  V +  GK++HG  IR    +   V SSLIDMY+KC  +
Sbjct: 292 GGANLKPDSFTLSSVLPLIAENVDISKGKEIHGCSIRQGLDAEVYVASSLIDMYAKCTRV 351

Query: 369 NDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNA 428
            D  +VF L   ++  + WN++I+   Q+G  ++ ++ F  M+ + +KP   + + I+ A
Sbjct: 352 VDSYRVFTLLTERDG-ISWNSIIAGCVQNGLFDEGLKFFRQMLMAKIKPKSYSFSSIMPA 410

Query: 429 CTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSY 488
           C H   +  G      +T + G   N    + L+++ A+ G         ++M    D  
Sbjct: 411 CAHLTTLHLGKQLHGYITRN-GFDENIFIASSLVDMYAKCGNIRTARQIFDRMRLR-DMV 468

Query: 489 LWNALHGVCRIHGN 502
            W A+   C +HG+
Sbjct: 469 SWTAMIMGCALHGH 482



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 56/260 (21%), Positives = 108/260 (41%), Gaps = 40/260 (15%)

Query: 28  ISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPT 87
           +  G   E +     +    I+  + + + I+  CA   +L LGK++H ++         
Sbjct: 377 VQNGLFDEGLKFFRQMLMAKIKPKSYSFSSIMPACAHLTTLHLGKQLHGYI--------- 427

Query: 88  TFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAE 147
                               R  FD+    N+F  ++++  YA  G ++ AR +FD M  
Sbjct: 428 -------------------TRNGFDE----NIFIASSLVDMYAKCGNIRTARQIFDRMRL 464

Query: 148 RDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEEL-KLTRQ 206
           RD+VSW  MI+G A  G   + ++ ++ ++   I  N  +F  +LT C     + +  + 
Sbjct: 465 RDMVSWTAMIMGCALHGHALDAIELFEQMKTEGIEPNYVAFMAVLTACSHAGLVDEAWKY 524

Query: 207 VHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDV----LTWTTMVSGYA 262
            +   L  G    V   +++ D   + G L +A   +D      +      W T++S   
Sbjct: 525 FNSMTLDFGIAPGVEHYAAVSDLLGRAGRLEEA---YDFICGMPIGPTGSVWATLLSACR 581

Query: 263 KLGDMESASKLFNEMPEKNP 282
              +++ A K+ N + E +P
Sbjct: 582 VHKNVDMAEKVANRILEVDP 601


>gi|302142753|emb|CBI19956.3| unnamed protein product [Vitis vinifera]
          Length = 446

 Score =  293 bits (751), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 161/483 (33%), Positives = 257/483 (53%), Gaps = 43/483 (8%)

Query: 90  LSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERD 149
           +   L+ MY KCG+ VD+RKVFD +P +N  ++N M+ GY   G  K A  LF+ M+ R 
Sbjct: 2   IGTSLVCMYAKCGNVVDSRKVFDYMPERNAVTWNAMICGYLGNGDSKSAVLLFEKMSIRT 61

Query: 150 VVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHG 209
            V+W  MI G+A+SG  E   +F+                                    
Sbjct: 62  AVTWIEMIDGFARSGDTETARRFFDD---------------------------------- 87

Query: 210 QVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMES 269
              V   L NVV  + +VD YA+  E+  AR +F+    R+   W++M+SGY K G+++ 
Sbjct: 88  ---VPSELRNVVTWTVMVDGYARNAEMEAAREVFEGMPQRNFFAWSSMISGYCKKGNVKE 144

Query: 270 ASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACAS 329
           A  +F+ +P +N V+W +LI+GY +NG  ++ALE F +M      P++ T +S L AC+ 
Sbjct: 145 ARSIFDRIPVRNLVNWNSLISGYAQNGFSEEALEAFGKMQAEGFEPDEVTIASVLSACSQ 204

Query: 330 IVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNT 389
           +  L  GK++H  +     + N  V++ L+DMY+KCG L + R +F+   ++ N   WN+
Sbjct: 205 LGLLDAGKKIHHMMNHKGIKLNQFVLNGLVDMYAKCGDLANARLIFEGMAHR-NRACWNS 263

Query: 390 MISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDL 449
           MIS    HG  ++A+  F  M  S   PD+IT   +L+AC H G V  GL  F  M    
Sbjct: 264 MISGFAIHGQSKEALEFFGRMEDSHEGPDEITFLSVLSACAHGGFVNAGLEIFSRM-EKY 322

Query: 450 GIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKV 509
           G+    +H+ CLI+LL +AG   +  + +++MP + +  +W AL G CR+H +++M  +V
Sbjct: 323 GLTTGIKHYGCLIDLLGRAGRIKEAYDLIKRMPVKPNDVVWGALLGACRVHLDMEMADRV 382

Query: 510 VDQL--IDQNPQSS--ATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIEN 565
           V+++  +D N  S   + + LLS+IY+A  +    EK+R  +  + F+K    S I   N
Sbjct: 383 VEEIVKVDSNISSGCDSHYVLLSNIYAASDRWEKAEKMRMEMANKGFQKTSGCSSIMPGN 442

Query: 566 KVH 568
             H
Sbjct: 443 NTH 445



 Score =  132 bits (331), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 87/282 (30%), Positives = 144/282 (51%), Gaps = 11/282 (3%)

Query: 221 VISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEK 280
           +I +S+V  YAKCG + D+R++FD    R+ +TW  M+ GY   GD +SA  LF +M  +
Sbjct: 1   MIGTSLVCMYAKCGNVVDSRKVFDYMPERNAVTWNAMICGYLGNGDSKSAVLLFEKMSIR 60

Query: 281 NPVSWTTLIAGYTRNGLGQKALELFTRMMI-LRIRPNQHTFSSCLCACASIVSLKHGKQV 339
             V+W  +I G+ R+G  + A   F  +   LR   N  T++  +   A    ++  ++V
Sbjct: 61  TAVTWIEMIDGFARSGDTETARRFFDDVPSELR---NVVTWTVMVDGYARNAEMEAAREV 117

Query: 340 HGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGY 399
              + + NF       SS+I  Y K G + + R +FD    + N + WN++IS   Q+G+
Sbjct: 118 FEGMPQRNF----FAWSSMISGYCKKGNVKEARSIFDRIPVR-NLVNWNSLISGYAQNGF 172

Query: 400 DEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHA 459
            E+A+  F  M     +PD++T+A +L+AC+  GL+  G      M H  GI  NQ    
Sbjct: 173 SEEALEAFGKMQAEGFEPDEVTIASVLSACSQLGLLDAGKKIHHMMNHK-GIKLNQFVLN 231

Query: 460 CLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHG 501
            L+++ A+ G         E M + + +  WN++     IHG
Sbjct: 232 GLVDMYAKCGDLANARLIFEGMAHRNRA-CWNSMISGFAIHG 272



 Score =  109 bits (272), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 79/324 (24%), Positives = 142/324 (43%), Gaps = 62/324 (19%)

Query: 89  FLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAER 148
           F  + +IS Y K G+  +AR +FD+IPV+NL ++N+++SGY                   
Sbjct: 127 FAWSSMISGYCKKGNVKEARSIFDRIPVRNLVNWNSLISGY------------------- 167

Query: 149 DVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVH 208
                       A++G  EE L+ +  ++      +E + A +L+ C +L  L   +++H
Sbjct: 168 ------------AQNGFSEEALEAFGKMQAEGFEPDEVTIASVLSACSQLGLLDAGKKIH 215

Query: 209 GQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDME 268
             +   G   N  + + +VD YAKCG+L++AR +F+    R+   W +M+SG+A      
Sbjct: 216 HMMNHKGIKLNQFVLNGLVDMYAKCGDLANARLIFEGMAHRNRACWNSMISGFAI----- 270

Query: 269 SASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACA 328
                                     +G  ++ALE F RM      P++ TF S L ACA
Sbjct: 271 --------------------------HGQSKEALEFFGRMEDSHEGPDEITFLSVLSACA 304

Query: 329 SIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWN 388
               +  G ++   + +    +       LID+  + G + +   +      K N ++W 
Sbjct: 305 HGGFVNAGLEIFSRMEKYGLTTGIKHYGCLIDLLGRAGRIKEAYDLIKRMPVKPNDVVWG 364

Query: 389 TMISALTQHGYDEQAIRLFHDMVR 412
            ++ A   H   E A R+  ++V+
Sbjct: 365 ALLGACRVHLDMEMADRVVEEIVK 388



 Score = 69.3 bits (168), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 47/175 (26%), Positives = 85/175 (48%), Gaps = 9/175 (5%)

Query: 13  KNLPN-NCLIQSFLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLG 71
           +NL N N LI  +      G   EA+ +   +   G      T+A +L  C++   L  G
Sbjct: 155 RNLVNWNSLISGY---AQNGFSEEALEAFGKMQAEGFEPDEVTIASVLSACSQLGLLDAG 211

Query: 72  KRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYAN 131
           K++H H+   +      F+ N L+ MY KCG   +AR +F+ +  +N   +N+M+SG+A 
Sbjct: 212 KKIH-HMMNHKGIKLNQFVLNGLVDMYAKCGDLANARLIFEGMAHRNRACWNSMISGFAI 270

Query: 132 LGMMKHARNLFDNMAER----DVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSIS 182
            G  K A   F  M +     D +++ +++   A  G V  GL+ +  + ++ ++
Sbjct: 271 HGQSKEALEFFGRMEDSHEGPDEITFLSVLSACAHGGFVNAGLEIFSRMEKYGLT 325


>gi|356575510|ref|XP_003555883.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g04780-like [Glycine max]
          Length = 618

 Score =  293 bits (751), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 168/540 (31%), Positives = 270/540 (50%), Gaps = 63/540 (11%)

Query: 55  LAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKI 114
           L ++LQ CA+++S   G+  H  +     +      SN LI+MY KC S VD+       
Sbjct: 46  LHYLLQLCAKTRSSMGGRACHAQIIRIGLEMDI-LTSNMLINMYSKC-SLVDS------- 96

Query: 115 PVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYK 174
                                  AR  F+ M  + +VSWNT+I    ++    E LK   
Sbjct: 97  -----------------------ARKKFNEMPVKSLVSWNTVIGALTQNAEDREALKLLI 133

Query: 175 VLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCG 234
            ++R     NEF+ + +L  C     +    Q+H   +     SN  + ++++  YAKC 
Sbjct: 134 QMQREGTPFNEFTISSVLCNCAFKCAILECMQLHAFSIKAAIDSNCFVGTALLHVYAKCS 193

Query: 235 ELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTR 294
            + D                               AS++F  MPEKN V+W++++AGY +
Sbjct: 194 SIKD-------------------------------ASQMFESMPEKNAVTWSSMMAGYVQ 222

Query: 295 NGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIV 354
           NG  ++AL +F    ++    +    SS + ACA + +L  GKQVH    ++ F SN  V
Sbjct: 223 NGFHEEALLIFRNAQLMGFDQDPFMISSAVSACAGLATLIEGKQVHAISHKSGFGSNIYV 282

Query: 355 MSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSS 414
            SSLIDMY+KCGC+ +   VF       + +LWN MIS   +H    +A+ LF  M +  
Sbjct: 283 SSSLIDMYAKCGCIREAYLVFQGVLEVRSIVLWNAMISGFARHARAPEAMILFEKMQQRG 342

Query: 415 VKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQL 474
             PD +T   +LNAC+H GL +EG  YF+ M     + P+  H++C+I++L +AG   + 
Sbjct: 343 FFPDDVTYVCVLNACSHMGLHEEGQKYFDLMVRQHNLSPSVLHYSCMIDILGRAGLVHKA 402

Query: 475 MNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSAL 534
            + +E+MP+   S +W +L   C+I+GNI+        L +  P ++  H LL++IY+A 
Sbjct: 403 YDLIERMPFNATSSMWGSLLASCKIYGNIEFAEIAAKYLFEMEPNNAGNHILLANIYAAN 462

Query: 535 GKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQM 594
            K   V + R+L+ E   +KE+  SWIEI+NK+H+F+V +  HP  D +Y+ L+ L  ++
Sbjct: 463 KKWDEVARARKLLRETDVRKERGTSWIEIKNKIHSFTVGERNHPQIDDIYAKLDNLVVEL 522



 Score = 96.3 bits (238), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 80/380 (21%), Positives = 159/380 (41%), Gaps = 65/380 (17%)

Query: 26  SLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKT 85
           +L    +  EA+  L  + + G      T++ +L  CA   ++    ++H    +     
Sbjct: 118 ALTQNAEDREALKLLIQMQREGTPFNEFTISSVLCNCAFKCAILECMQLHA-FSIKAAID 176

Query: 86  PTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNM 145
              F+   L+ +Y KC S  DA ++F+ +P KN  ++++M++GY   G  + A  +F   
Sbjct: 177 SNCFVGTALLHVYAKCSSIKDASQMFESMPEKNAVTWSSMMAGYVQNGFHEEALLIFR-- 234

Query: 146 AERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTR 205
                   N  ++G+ +                     + F  +  ++ C  L  L   +
Sbjct: 235 --------NAQLMGFDQ---------------------DPFMISSAVSACAGLATLIEGK 265

Query: 206 QVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDET-DARDVLTWTTMVSGYAKL 264
           QVH     +GF SN+ +SSS++D YAKCG + +A  +F    + R ++ W  M+SG+A  
Sbjct: 266 QVHAISHKSGFGSNIYVSSSLIDMYAKCGCIREAYLVFQGVLEVRSIVLWNAMISGFA-- 323

Query: 265 GDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCL 324
                                        R+    +A+ LF +M      P+  T+   L
Sbjct: 324 -----------------------------RHARAPEAMILFEKMQQRGFFPDDVTYVCVL 354

Query: 325 CACASIVSLKHGKQVHGFLIRT-NFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKEN 383
            AC+ +   + G++    ++R  N   + +  S +ID+  + G ++    + +       
Sbjct: 355 NACSHMGLHEEGQKYFDLMVRQHNLSPSVLHYSCMIDILGRAGLVHKAYDLIERMPFNAT 414

Query: 384 SMLWNTMISALTQHGYDEQA 403
           S +W +++++   +G  E A
Sbjct: 415 SSMWGSLLASCKIYGNIEFA 434


>gi|168048332|ref|XP_001776621.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162672066|gb|EDQ58609.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 703

 Score =  293 bits (751), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 173/539 (32%), Positives = 269/539 (49%), Gaps = 70/539 (12%)

Query: 43  LAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCG 102
           +   G++  A T   IL+ CA   +LK GK VH  ++    ++    +   L+ MY KCG
Sbjct: 120 MCHEGVQPNAGTYMIILKACASLSALKWGKEVHACIRHGGLESDVR-VGTALLRMYGKCG 178

Query: 103 SDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAK 162
           S                               +  AR +FDN+   D++SW  MI  YA+
Sbjct: 179 S-------------------------------INEARRIFDNLMNHDIISWTVMIGAYAQ 207

Query: 163 SGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVI 222
           SG  +E  +    + +     N  ++  IL  C     LK  ++VH   L  G       
Sbjct: 208 SGNGKEAYRLMLQMEQEGFKPNAITYVSILNACASEGALKWVKRVHRHALDAGL------ 261

Query: 223 SSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNP 282
                       EL             DV   T +V  YAK G ++ A  +F+ M  ++ 
Sbjct: 262 ------------EL-------------DVRVGTALVQMYAKSGSIDDARVVFDRMKVRDV 296

Query: 283 VSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGF 342
           VSW  +I  +  +G G +A +LF +M     +P+   F S L ACAS  +L+  K++H  
Sbjct: 297 VSWNVMIGAFAEHGRGHEAYDLFLQMQTEGCKPDAIMFLSILNACASAGALEWVKKIHRH 356

Query: 343 LIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQ 402
            + +    +  V ++L+ MYSK G ++D R VFD    + N + WN MIS L QHG  + 
Sbjct: 357 ALDSGLEVDVRVGTALVHMYSKSGSIDDARVVFDRMKVR-NVVSWNAMISGLAQHGLGQD 415

Query: 403 AIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLI 462
           A+ +F  M    VKPD++T   +L+AC+H+GLV EG + + +MT   GI P+  H  C++
Sbjct: 416 ALEVFRRMTAHGVKPDRVTFVAVLSACSHAGLVDEGRSQYLAMTQVYGIEPDVSHCNCMV 475

Query: 463 ELLAQAGCSDQLMNQ---LEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQ 519
           +LL +AG   +LM     ++ M  + D   W AL G CR +GN+++G  V  + +  +P+
Sbjct: 476 DLLGRAG---RLMEAKLFIDNMAVDPDEATWGALLGSCRTYGNVELGELVAKERLKLDPK 532

Query: 520 SSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHP 578
           ++AT+ LLS+IY+  GK  +V  VR ++ ER  +KE   SWIE++NK+H F V+DS HP
Sbjct: 533 NAATYVLLSNIYAEAGKWDMVSWVRTMMRERGIRKEPGRSWIEVDNKIHDFLVADSSHP 591



 Score =  135 bits (341), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 103/406 (25%), Positives = 180/406 (44%), Gaps = 49/406 (12%)

Query: 184 NEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLF 243
           + F +  +L  C+K ++L   +QVH  ++ +    N  + ++++  Y +CG L +AR   
Sbjct: 27  DSFMYVEVLKRCLKQKDLMAAKQVHDCIIKSRMEQNAHVMNNLLHVYIECGRLQEAR--- 83

Query: 244 DETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALE 303
                                        +F+ + +K+  SW  +IAGY  +   + A+ 
Sbjct: 84  ----------------------------CVFDALVKKSGASWNAMIAGYVEHKHAEDAMR 115

Query: 304 LFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYS 363
           LF  M    ++PN  T+   L ACAS+ +LK GK+VH  +      S+  V ++L+ MY 
Sbjct: 116 LFREMCHEGVQPNAGTYMIILKACASLSALKWGKEVHACIRHGGLESDVRVGTALLRMYG 175

Query: 364 KCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLA 423
           KCG +N+ R++FD   N  + + W  MI A  Q G  ++A RL   M +   KP+ IT  
Sbjct: 176 KCGSINEARRIFDNLMN-HDIISWTVMIGAYAQSGNGKEAYRLMLQMEQEGFKPNAITYV 234

Query: 424 VILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPY 483
            ILNAC   G ++  +        D G+  +      L+++ A++G  D      ++M  
Sbjct: 235 SILNACASEGALK-WVKRVHRHALDAGLELDVRVGTALVQMYAKSGSIDDARVVFDRMKV 293

Query: 484 EHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLS-SIYSALGKGRLVEK 542
             D   WN + G    HG    G +  D  +    +      ++  SI +A      +E 
Sbjct: 294 R-DVVSWNVMIGAFAEHGR---GHEAYDLFLQMQTEGCKPDAIMFLSILNACASAGALEW 349

Query: 543 VRQLINERQFKKEQAISWIEIENK-----VHAFSVSDSLHPMRDVL 583
           V+++       +    S +E++ +     VH +S S S+   R V 
Sbjct: 350 VKKI------HRHALDSGLEVDVRVGTALVHMYSKSGSIDDARVVF 389



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 111/413 (26%), Positives = 172/413 (41%), Gaps = 107/413 (25%)

Query: 31  GQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLH-----LKLTQRKT 85
           G   EA   +  + Q G +  A T   IL  CA   +LK  KRVH H     L+L  R  
Sbjct: 209 GNGKEAYRLMLQMEQEGFKPNAITYVSILNACASEGALKWVKRVHRHALDAGLELDVR-- 266

Query: 86  PTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNM 145
               +   L+ MY K GS  DAR VFD++ V+++ S+N M+  +A  G    A +LF  M
Sbjct: 267 ----VGTALVQMYAKSGSIDDARVVFDRMKVRDVVSWNVMIGAFAEHGRGHEAYDLFLQM 322

Query: 146 AERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTR 205
                                 EG K   ++           F  IL  C     L+  +
Sbjct: 323 Q--------------------TEGCKPDAIM-----------FLSILNACASAGALEWVK 351

Query: 206 QVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLG 265
           ++H   L +G   +V + +++V  Y+K G + DAR +FD    R+V++W  M+SG A+  
Sbjct: 352 KIHRHALDSGLEVDVRVGTALVHMYSKSGSIDDARVVFDRMKVRNVVSWNAMISGLAQ-- 409

Query: 266 DMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLC 325
                                        +GLGQ ALE+F RM    ++P++ TF + L 
Sbjct: 410 -----------------------------HGLGQDALEVFRRMTAHGVKPDRVTFVAVLS 440

Query: 326 ACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSM 385
           AC+           H  L+    RS  + M+                QV+ +  +  +  
Sbjct: 441 ACS-----------HAGLVDEG-RSQYLAMT----------------QVYGIEPDVSHC- 471

Query: 386 LWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEG 438
             N M+  L + G   +A +LF D +  +V PD+ T   +L +C   G V+ G
Sbjct: 472 --NCMVDLLGRAGRLMEA-KLFIDNM--AVDPDEATWGALLGSCRTYGNVELG 519



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 73/277 (26%), Positives = 120/277 (43%), Gaps = 47/277 (16%)

Query: 293 TRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNT 352
           T N L +  + L  R+    I  +   +   L  C     L   KQVH  +I++    N 
Sbjct: 5   TANTLSEAIVVLMNRLQRGLI-TDSFMYVEVLKRCLKQKDLMAAKQVHDCIIKSRMEQNA 63

Query: 353 IVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVR 412
            VM++L+ +Y +CG L + R VFD    K  +  WN MI+   +H + E A+RLF +M  
Sbjct: 64  HVMNNLLHVYIECGRLQEARCVFDALVKKSGAS-WNAMIAGYVEHKHAEDAMRLFREMCH 122

Query: 413 SSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSD 472
             V+P+  T  +IL AC     ++ G                +E HAC            
Sbjct: 123 EGVQPNAGTYMIILKACASLSALKWG----------------KEVHAC------------ 154

Query: 473 QLMNQLEKMPYEHDSYLWNAL---HGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSS 529
                +     E D  +  AL   +G C   G+I+  R++ D L++ +  S     ++  
Sbjct: 155 -----IRHGGLESDVRVGTALLRMYGKC---GSINEARRIFDNLMNHDIISWT---VMIG 203

Query: 530 IYSALGKGRLVEKVRQLIN-ERQFKKEQAISWIEIEN 565
            Y+  G G+  E  R ++  E++  K  AI+++ I N
Sbjct: 204 AYAQSGNGK--EAYRLMLQMEQEGFKPNAITYVSILN 238


>gi|225443714|ref|XP_002265079.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g18840-like [Vitis vinifera]
          Length = 536

 Score =  293 bits (751), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 150/478 (31%), Positives = 257/478 (53%), Gaps = 32/478 (6%)

Query: 135 MKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTI 194
           + +A ++F  +   +   WNT+I  YA S   E  L  +  +   S+  ++++F   L  
Sbjct: 58  IPYAHSIFSRIPNPNSYMWNTIIRAYANSPTPEAALTIFHQMLHASVLPDKYTFTFALKS 117

Query: 195 CVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRL------------ 242
           C     ++  RQ+HG VL TG   ++ I ++++  YA CG + DAR L            
Sbjct: 118 CGSFSGVEEGRQIHGHVLKTGLGDDLFIQNTLIHLYASCGCIEDARHLLDRMLERDVVSW 177

Query: 243 -------------------FDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPV 283
                              FDE   R+V +W  M+SGY  +G +E A ++F E P KN V
Sbjct: 178 NALLSAYAERGLMELACHLFDEMTERNVESWNFMISGYVGVGLLEEARRVFGETPVKNVV 237

Query: 284 SWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFL 343
           SW  +I GY+  G   + L LF  M    ++P+  T  S L ACA + +L  G+ VH ++
Sbjct: 238 SWNAMITGYSHAGRFSEVLVLFEDMQHAGVKPDNCTLVSVLSACAHVGALSQGEWVHAYI 297

Query: 344 IRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQA 403
            +     +  V ++L+DMYSKCG +    +VF+    K+ S  WN++IS L+ HG  + A
Sbjct: 298 DKNGISIDGFVATALVDMYSKCGSIEKALEVFNSCLRKDIST-WNSIISGLSTHGSGQHA 356

Query: 404 IRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIE 463
           +++F +M+    KP+++T   +L+AC+ +GL+ EG   F  M H  GI P  EH+ C+++
Sbjct: 357 LQIFSEMLVEGFKPNEVTFVCVLSACSRAGLLDEGREMFNLMVHVHGIQPTIEHYGCMVD 416

Query: 464 LLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSAT 523
           LL + G  ++    ++KMP +  S +W +L G CR HGN+++  +V  +L++ +PQ S++
Sbjct: 417 LLGRVGLLEEAEELVQKMPQKEASVVWESLLGACRNHGNVELAERVAQKLLELSPQESSS 476

Query: 524 HGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRD 581
              LS++Y+++G+ + V +VRQ +  +  +K+   S IE++  V+ F   + L   +D
Sbjct: 477 FVQLSNMYASMGRWKDVMEVRQKMRAQGVRKDPGCSMIEVDGTVYEFLAGEGLVSGKD 534



 Score =  150 bits (380), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 100/393 (25%), Positives = 176/393 (44%), Gaps = 64/393 (16%)

Query: 54  TLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDK 113
           T  F L+ C     ++ G+++H H+ L        F+ N LI +Y  CG   DAR + D+
Sbjct: 110 TFTFALKSCGSFSGVEEGRQIHGHV-LKTGLGDDLFIQNTLIHLYASCGCIEDARHLLDR 168

Query: 114 IPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKF- 172
           +  +++ S+N +LS YA  G+M+ A +LFD M ER+V SWN MI GY   G +EE  +  
Sbjct: 169 MLERDVVSWNALLSAYAERGLMELACHLFDEMTERNVESWNFMISGYVGVGLLEEARRVF 228

Query: 173 -----------------YKVLRRFS-------------ISCNEFSFAGILTICVKLEELK 202
                            Y    RFS             +  +  +   +L+ C  +  L 
Sbjct: 229 GETPVKNVVSWNAMITGYSHAGRFSEVLVLFEDMQHAGVKPDNCTLVSVLSACAHVGALS 288

Query: 203 LTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYA 262
               VH  +   G   +  +++++VD Y+KCG +  A  +F+    +D+ TW +++SG +
Sbjct: 289 QGEWVHAYIDKNGISIDGFVATALVDMYSKCGSIEKALEVFNSCLRKDISTWNSIISGLS 348

Query: 263 KLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSS 322
             G  + A ++F+EM          L+ G+                     +PN+ TF  
Sbjct: 349 THGSGQHALQIFSEM----------LVEGF---------------------KPNEVTFVC 377

Query: 323 CLCACASIVSLKHGKQVHGFLIRTNFRSNTIV-MSSLIDMYSKCGCLNDGRQVFDLTDNK 381
            L AC+    L  G+++   ++  +    TI     ++D+  + G L +  ++      K
Sbjct: 378 VLSACSRAGLLDEGREMFNLMVHVHGIQPTIEHYGCMVDLLGRVGLLEEAEELVQKMPQK 437

Query: 382 ENSMLWNTMISALTQHGYDEQAIRLFHDMVRSS 414
           E S++W +++ A   HG  E A R+   ++  S
Sbjct: 438 EASVVWESLLGACRNHGNVELAERVAQKLLELS 470



 Score = 69.7 bits (169), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 65/291 (22%), Positives = 124/291 (42%), Gaps = 37/291 (12%)

Query: 31  GQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFL 90
           G+ SE +   + +   G++    TL  +L  CA   +L  G+ VH ++      +   F+
Sbjct: 250 GRFSEVLVLFEDMQHAGVKPDNCTLVSVLSACAHVGALSQGEWVHAYID-KNGISIDGFV 308

Query: 91  SNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDV 150
           +  L+ MY KCGS   A +VF+    K++ ++N+++SG +  G  +HA  +F  M     
Sbjct: 309 ATALVDMYSKCGSIEKALEVFNSCLRKDISTWNSIISGLSTHGSGQHALQIFSEM----- 363

Query: 151 VSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHG- 209
                          + EG K            NE +F  +L+ C +   L   R++   
Sbjct: 364 ---------------LVEGFK-----------PNEVTFVCVLSACSRAGLLDEGREMFNL 397

Query: 210 QVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDV-LTWTTMVSGYAKLGDME 268
            V V G    +     +VD   + G L +A  L  +   ++  + W +++      G++E
Sbjct: 398 MVHVHGIQPTIEHYGCMVDLLGRVGLLEEAEELVQKMPQKEASVVWESLLGACRNHGNVE 457

Query: 269 SASKLFNEMPEKNP---VSWTTLIAGYTRNGLGQKALELFTRMMILRIRPN 316
            A ++  ++ E +P    S+  L   Y   G  +  +E+  +M    +R +
Sbjct: 458 LAERVAQKLLELSPQESSSFVQLSNMYASMGRWKDVMEVRQKMRAQGVRKD 508


>gi|357149883|ref|XP_003575265.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Brachypodium distachyon]
          Length = 877

 Score =  293 bits (751), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 174/571 (30%), Positives = 287/571 (50%), Gaps = 69/571 (12%)

Query: 39  SLDLLAQ---RGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLI 95
           +L+LL Q    G+     TL+ IL+ CA S +  LG+++H                    
Sbjct: 287 ALELLLQMKSSGLVPNVFTLSSILKACAGSGAFNLGRQIH-------------------- 326

Query: 96  SMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNT 155
               K  +D D    F             ++  YA  G++  A+ +FD + +RD+V WN 
Sbjct: 327 GFMVKANADSDNYIAF------------GLVDMYAKHGLLDDAKKVFDWIPQRDLVLWNA 374

Query: 156 MIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTG 215
           +I G +      E L  +  +R+     N  + A +L     LE +  TRQVH      G
Sbjct: 375 LISGCSHGAQHAEALSLFCRMRKEGFDVNRTTLAAVLKSTASLEAISDTRQVHALAEKLG 434

Query: 216 FLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFN 275
           FLS+  + + ++D+Y KC  L+ A R+F++  + D+                        
Sbjct: 435 FLSDSHVVNGLIDSYWKCDCLNYAYRVFEKHGSYDI------------------------ 470

Query: 276 EMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKH 335
                  +++T++I   ++   G+ A++LF  M+   + P+    SS L ACAS+ + + 
Sbjct: 471 -------IAFTSMITALSQCDHGEDAIKLFMEMLRKGLDPDPFVLSSLLNACASLSAYEQ 523

Query: 336 GKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALT 395
           GKQVH  LI+  F S+    ++L+  Y+KCG + D    F     K   + W+ MI  L 
Sbjct: 524 GKQVHAHLIKRQFMSDVFAGNALVYTYAKCGSIEDADLAFSGLPEK-GVVSWSAMIGGLA 582

Query: 396 QHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQ 455
           QHG+ ++A+ +FH MV   + P+ IT+  +L AC H+GLV E   YF SM    GI   +
Sbjct: 583 QHGHGKRALDVFHRMVDEHISPNHITMTSVLCACNHAGLVDEAKRYFNSMKEMFGIERTE 642

Query: 456 EHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLID 515
           EH+AC+I+LL +AG  D  M  +  MP++ ++ +W AL    R+H + ++GR   ++L  
Sbjct: 643 EHYACMIDLLGRAGKLDDAMELVNSMPFQTNAAVWGALLAASRVHRDPELGRLAAEKLFI 702

Query: 516 QNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDS 575
             P+ S TH LL++ Y++ G    V KVR+L+ + + KKE A+SW+E+++KVH F V D 
Sbjct: 703 LEPEKSGTHVLLANTYASAGMWDDVAKVRKLMKDSKVKKEPAMSWVELKDKVHTFIVGDK 762

Query: 576 LHPMRDVLYSVLEQLAGQMGEDA--PSLDAD 604
            HP    +Y+ L++L   M +    P+++ D
Sbjct: 763 SHPRARDIYAKLDELGDLMTKAGYVPNVEVD 793



 Score =  167 bits (424), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 94/312 (30%), Positives = 155/312 (49%), Gaps = 33/312 (10%)

Query: 118 NLFSYNNMLSGYANLGMMKHARNLFDNMA-ERDVVSWNTMIIGYAKSGAVEEGLKFYKVL 176
           ++F  N +++ Y   G +  AR +FD    ER+ VSWN ++  Y K+      +K +  +
Sbjct: 134 DIFVANALVAMYGGFGFVDEARMVFDEAGCERNTVSWNGLMSAYVKNDRCSHAVKVFGEM 193

Query: 177 RRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGEL 236
               +  NEF F+ ++  C    +L+  R+VH  V+ TG+                    
Sbjct: 194 VWGGVQPNEFGFSCVVNACTGSRDLEAGRKVHAMVIRTGY-------------------- 233

Query: 237 SDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNG 296
                       +DV T   +V  Y+KLGD+  A+ +F ++PE + VSW   I+G   +G
Sbjct: 234 -----------DKDVFTANALVDMYSKLGDIRMAAVVFGKVPETDVVSWNAFISGCVLHG 282

Query: 297 LGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMS 356
             Q ALEL  +M    + PN  T SS L ACA   +   G+Q+HGF+++ N  S+  +  
Sbjct: 283 HDQHALELLLQMKSSGLVPNVFTLSSILKACAGSGAFNLGRQIHGFMVKANADSDNYIAF 342

Query: 357 SLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVK 416
            L+DMY+K G L+D ++VFD    ++  +LWN +IS  +      +A+ LF  M +    
Sbjct: 343 GLVDMYAKHGLLDDAKKVFDWIPQRD-LVLWNALISGCSHGAQHAEALSLFCRMRKEGFD 401

Query: 417 PDKITLAVILNA 428
            ++ TLA +L +
Sbjct: 402 VNRTTLAAVLKS 413



 Score =  165 bits (417), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 132/544 (24%), Positives = 234/544 (43%), Gaps = 71/544 (13%)

Query: 5   FSPRGINRKNLPNNCLIQSFLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAE 64
           F   G  R  +  N L+ ++   +   + S A+     +   G++      + ++  C  
Sbjct: 158 FDEAGCERNTVSWNGLMSAY---VKNDRCSHAVKVFGEMVWGGVQPNEFGFSCVVNACTG 214

Query: 65  SKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNN 124
           S+ L+ G++VH                    +M  + G D            K++F+ N 
Sbjct: 215 SRDLEAGRKVH--------------------AMVIRTGYD------------KDVFTANA 242

Query: 125 MLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCN 184
           ++  Y+ LG ++ A  +F  + E DVVSWN  I G    G  +  L+    ++   +  N
Sbjct: 243 LVDMYSKLGDIRMAAVVFGKVPETDVVSWNAFISGCVLHGHDQHALELLLQMKSSGLVPN 302

Query: 185 EFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFD 244
            F+ + IL  C       L RQ+HG ++     S+  I+  +VD YAK G L DA+++FD
Sbjct: 303 VFTLSSILKACAGSGAFNLGRQIHGFMVKANADSDNYIAFGLVDMYAKHGLLDDAKKVFD 362

Query: 245 ETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALEL 304
               RD++ W                                 LI+G +      +AL L
Sbjct: 363 WIPQRDLVLW-------------------------------NALISGCSHGAQHAEALSL 391

Query: 305 FTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSK 364
           F RM       N+ T ++ L + AS+ ++   +QVH    +  F S++ V++ LID Y K
Sbjct: 392 FCRMRKEGFDVNRTTLAAVLKSTASLEAISDTRQVHALAEKLGFLSDSHVVNGLIDSYWK 451

Query: 365 CGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAV 424
           C CLN   +VF+      + + + +MI+AL+Q  + E AI+LF +M+R  + PD   L+ 
Sbjct: 452 CDCLNYAYRVFE-KHGSYDIIAFTSMITALSQCDHGEDAIKLFMEMLRKGLDPDPFVLSS 510

Query: 425 ILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYE 484
           +LNAC      ++G      +      + +      L+   A+ G  +        +P E
Sbjct: 511 LLNACASLSAYEQGKQVHAHLI-KRQFMSDVFAGNALVYTYAKCGSIEDADLAFSGLP-E 568

Query: 485 HDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVR 544
                W+A+ G    HG+      V  +++D++   S  H  ++S+  A     LV++ +
Sbjct: 569 KGVVSWSAMIGGLAQHGHGKRALDVFHRMVDEHI--SPNHITMTSVLCACNHAGLVDEAK 626

Query: 545 QLIN 548
           +  N
Sbjct: 627 RYFN 630



 Score =  154 bits (388), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 121/455 (26%), Positives = 195/455 (42%), Gaps = 83/455 (18%)

Query: 53  ETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFD 112
           ET+  +L + A ++SL  G  +H HL    +        NHL+S Y KC     AR+VFD
Sbjct: 5   ETIGPLLTRYAATQSLLQGAHIHAHL---LKSGLFAVFRNHLLSFYSKCRLPGSARRVFD 61

Query: 113 KIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKF 172
           +IP     S++++++ Y+N  M + A   F +M                           
Sbjct: 62  EIPDPCHVSWSSLVTAYSNNAMPRDALGAFRSM--------------------------- 94

Query: 173 YKVLRRFSISCNEFSFAGILTICVKL-EELKLTRQVHGQVLVTGFLSNVVISSSIVDAYA 231
               R  S+ CNEF    +L + +K   +     Q+H   + TG   ++ +++++V  Y 
Sbjct: 95  ----RSCSVRCNEF----VLPVVLKCAPDAGFGTQLHALAMATGLGGDIFVANALVAMYG 146

Query: 232 KCGELSDARRLFDETDA-RDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIA 290
             G + +AR +FDE    R+ ++W  ++S Y K      A K+F EM       W     
Sbjct: 147 GFGFVDEARMVFDEAGCERNTVSWNGLMSAYVKNDRCSHAVKVFGEM------VWGG--- 197

Query: 291 GYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRS 350
                                 ++PN+  FS  + AC     L+ G++VH  +IRT +  
Sbjct: 198 ----------------------VQPNEFGFSCVVNACTGSRDLEAGRKVHAMVIRTGYDK 235

Query: 351 NTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDM 410
           +    ++L+DMYSK G +     VF     + + + WN  IS    HG+D+ A+ L   M
Sbjct: 236 DVFTANALVDMYSKLGDIRMAAVVFGKVP-ETDVVSWNAFISGCVLHGHDQHALELLLQM 294

Query: 411 VRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHA----CLIELLA 466
             S + P+  TL+ IL AC  SG    G        H   +  N +        L+++ A
Sbjct: 295 KSSGLVPNVFTLSSILKACAGSGAFNLG-----RQIHGFMVKANADSDNYIAFGLVDMYA 349

Query: 467 QAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHG 501
           + G  D      + +P + D  LWNAL   C  HG
Sbjct: 350 KHGLLDDAKKVFDWIP-QRDLVLWNALISGCS-HG 382



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 67/246 (27%), Positives = 121/246 (49%), Gaps = 5/246 (2%)

Query: 257 MVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPN 316
           ++S Y+K     SA ++F+E+P+   VSW++L+  Y+ N + + AL  F  M    +R N
Sbjct: 43  LLSFYSKCRLPGSARRVFDEIPDPCHVSWSSLVTAYSNNAMPRDALGAFRSMRSCSVRCN 102

Query: 317 QHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFD 376
           +      L  CA       G Q+H   + T    +  V ++L+ MY   G +++ R VFD
Sbjct: 103 EFVLPVVL-KCAPDAGF--GTQLHALAMATGLGGDIFVANALVAMYGGFGFVDEARMVFD 159

Query: 377 LTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQ 436
               + N++ WN ++SA  ++     A+++F +MV   V+P++   + ++NACT S  ++
Sbjct: 160 EAGCERNTVSWNGLMSAYVKNDRCSHAVKVFGEMVWGGVQPNEFGFSCVVNACTGSRDLE 219

Query: 437 EGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGV 496
            G     +M    G   +      L+++ ++ G          K+P E D   WNA    
Sbjct: 220 AGRK-VHAMVIRTGYDKDVFTANALVDMYSKLGDIRMAAVVFGKVP-ETDVVSWNAFISG 277

Query: 497 CRIHGN 502
           C +HG+
Sbjct: 278 CVLHGH 283



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 84/385 (21%), Positives = 160/385 (41%), Gaps = 75/385 (19%)

Query: 20  LIQSFLSLISKG-QLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHL 78
           L  + +S  S G Q +EA+S    + + G  +   TLA +L+  A  +++   ++VH   
Sbjct: 371 LWNALISGCSHGAQHAEALSLFCRMRKEGFDVNRTTLAAVLKSTASLEAISDTRQVH--- 427

Query: 79  KLTQRKTPTTFLS-----NHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLG 133
            L ++     FLS     N LI  Y+KC                                
Sbjct: 428 ALAEK---LGFLSDSHVVNGLIDSYWKCDC------------------------------ 454

Query: 134 MMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILT 193
            + +A  +F+     D++++ +MI   ++    E+ +K +  + R  +  + F  + +L 
Sbjct: 455 -LNYAYRVFEKHGSYDIIAFTSMITALSQCDHGEDAIKLFMEMLRKGLDPDPFVLSSLLN 513

Query: 194 ICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLT 253
            C  L   +  +QVH  ++   F+S+V   +++V  YAKCG + DA   F     + V++
Sbjct: 514 ACASLSAYEQGKQVHAHLIKRQFMSDVFAGNALVYTYAKCGSIEDADLAFSGLPEKGVVS 573

Query: 254 WTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRI 313
           W+ M+ G A+                               +G G++AL++F RM+   I
Sbjct: 574 WSAMIGGLAQ-------------------------------HGHGKRALDVFHRMVDEHI 602

Query: 314 RPNQHTFSSCLCACASIVSLKHGKQVHGFLIRT-NFRSNTIVMSSLIDMYSKCGCLNDGR 372
            PN  T +S LCAC     +   K+    +             + +ID+  + G L+D  
Sbjct: 603 SPNHITMTSVLCACNHAGLVDEAKRYFNSMKEMFGIERTEEHYACMIDLLGRAGKLDDAM 662

Query: 373 QVFDLTDNKENSMLWNTMISALTQH 397
           ++ +    + N+ +W  +++A   H
Sbjct: 663 ELVNSMPFQTNAAVWGALLAASRVH 687


>gi|297734691|emb|CBI16742.3| unnamed protein product [Vitis vinifera]
          Length = 674

 Score =  293 bits (751), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 163/504 (32%), Positives = 279/504 (55%), Gaps = 15/504 (2%)

Query: 88  TFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAE 147
            F    LIS YF+ G    A ++FD++P KN+ S+  M+ GYA  G++  AR++F+ M E
Sbjct: 162 VFSWTSLISGYFRDGQVAKACQLFDQMPAKNVVSWTTMVLGYARNGLIDQARSVFNQMPE 221

Query: 148 RDVVSWNTMIIGYAKSGAVEEGLK-FYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQ 206
           ++ +SW  M+  Y  +G  +E LK F+++ +R     N +S+  +++ C+  + +    +
Sbjct: 222 KNTISWTAMMKSYVDNGRTDEALKLFHEMPQR-----NLYSWNTMISGCLDGKRVNEAFK 276

Query: 207 VHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGD 266
           +   +     L N V  + +V   A+ G    AR  FD+   +D+  W  M++ Y     
Sbjct: 277 LFHLMP----LRNAVSWTIMVSGLARNGFTKLAREYFDQMPNKDIAAWNAMITAYVDECL 332

Query: 267 MESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCA 326
           +  AS+LFN M E+N V+W  +I GY R+    +A++    M+   IRPN+ T +  L +
Sbjct: 333 IVEASELFNLMTERNIVTWNAMIDGYARHRPDGEAMKHLILMLRSCIRPNETTMTIILTS 392

Query: 327 CASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSML 386
           C  ++ L    Q H   I       T + ++LI MYS+ G ++  R  F+    K+  + 
Sbjct: 393 CWGMLELM---QAHALAIVVGCECETSLSNALITMYSRIGDISSSRIAFESLKAKD-VVS 448

Query: 387 WNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMT 446
           W  M+ A T HG+ + A+ +F  M++S  KPD+IT   +L+AC+H+GLV++G   F+SM+
Sbjct: 449 WTAMLLAFTYHGHGDHALHVFGHMLKSGTKPDEITFVGVLSACSHAGLVKKGQKLFDSMS 508

Query: 447 HDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPY-EHDSYLWNALHGVCRIHGNIDM 505
              G+ P  EH++CL+++L +AG   + M+ + KMP  E D  +  AL G CR+HGN++M
Sbjct: 509 RAYGLEPRAEHYSCLVDILGRAGQVHEAMDVVWKMPECERDGAVLGALLGACRLHGNVEM 568

Query: 506 GRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIEN 565
              +  +LI+  P SS  + LL+++++A G      +VR+ + +R  +K    S IE++ 
Sbjct: 569 ADYIGQKLIELQPNSSGGYVLLANVFAARGNWDEFAEVRKKMKDRNVRKVPGFSQIEVKG 628

Query: 566 KVHAFSVSDSLHPMRDVLYSVLEQ 589
           K HAF   D  HP  + +Y +L +
Sbjct: 629 KCHAFFAGDKSHPQVEEIYELLRE 652



 Score =  150 bits (378), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 100/365 (27%), Positives = 174/365 (47%), Gaps = 77/365 (21%)

Query: 95  ISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWN 154
           IS   +CG+   ARK+FD++P  +  SY  M++ Y     ++ A  LF  M +R +V+ +
Sbjct: 76  ISQLGRCGNVRGARKLFDEMPHHDNVSYTAMITAYLKNNELRKAEKLFQTMPDRTIVAES 135

Query: 155 TMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVT 214
            MI GYAK+G ++   K +  +    I  N FS+                          
Sbjct: 136 AMIDGYAKAGLMDSAQKVFDAM----IDTNVFSW-------------------------- 165

Query: 215 GFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLF 274
                    +S++  Y + G+++ A +LFD+  A++V++WTTMV GYA+ G ++ A  +F
Sbjct: 166 ---------TSLISGYFRDGQVAKACQLFDQMPAKNVVSWTTMVLGYARNGLIDQARSVF 216

Query: 275 NEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLK 334
           N+MPEKN +SWT ++  Y  NG   +AL+LF  M     + N +++++ +  C     + 
Sbjct: 217 NQMPEKNTISWTAMMKSYVDNGRTDEALKLFHEM----PQRNLYSWNTMISGCLDGKRVN 272

Query: 335 HGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKE----NSML---- 386
              ++   +   N  S TI++S L    ++ G     R+ FD   NK+    N+M+    
Sbjct: 273 EAFKLFHLMPLRNAVSWTIMVSGL----ARNGFTKLAREYFDQMPNKDIAAWNAMITAYV 328

Query: 387 ----------------------WNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAV 424
                                 WN MI    +H  D +A++    M+RS ++P++ T+ +
Sbjct: 329 DECLIVEASELFNLMTERNIVTWNAMIDGYARHRPDGEAMKHLILMLRSCIRPNETTMTI 388

Query: 425 ILNAC 429
           IL +C
Sbjct: 389 ILTSC 393


>gi|359489080|ref|XP_002264194.2| PREDICTED: pentatricopeptide repeat-containing protein
           At3g03580-like [Vitis vinifera]
          Length = 889

 Score =  293 bits (751), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 183/652 (28%), Positives = 320/652 (49%), Gaps = 109/652 (16%)

Query: 21  IQSFLSLIS----KGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVH- 75
           + S+ SLIS     G  +EA+         G+   + T++ +L+ C    S++ G  +H 
Sbjct: 181 VVSWNSLISGYNANGYWNEALEIYYRFRNLGVVPDSYTMSSVLRACGGLGSVEEGDIIHG 240

Query: 76  LHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMM 135
           L  K+  +K     ++N L+SMY K    +D R++FDK+ +++  S+N M+ GY+ +G+ 
Sbjct: 241 LIEKIGIKKD--VIVNNGLLSMYCKFNGLIDGRRIFDKMVLRDAVSWNTMICGYSQVGLY 298

Query: 136 KHARNLFDNMA--------------------------------------ERDVVSWNTMI 157
           + +  LF  M                                       E D  + N +I
Sbjct: 299 EESIKLFMEMVNQFKPDLLTITSILQACGHLGDLEFGKYVHDYMITSGYECDTTASNILI 358

Query: 158 IGYAK-------------------------------SGAVEEGLKFYKVLRRFSISCNEF 186
             YAK                               +G+ +E +K +K+++   +  +  
Sbjct: 359 NMYAKCGNLLASQEVFSGMKCKDSVSWNSMINVYIQNGSFDEAMKLFKMMKT-DVKPDSV 417

Query: 187 SFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDET 246
           ++  +L++  +L +L L +++H  +   GF SN+V+S+++VD YAKCGE+ D+ ++F+  
Sbjct: 418 TYVMLLSMSTQLGDLHLGKELHCDLAKMGFNSNIVVSNTLVDMYAKCGEMGDSLKVFENM 477

Query: 247 DARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFT 306
            ARD++TW T+++      D                              LG   L + +
Sbjct: 478 KARDIITWNTIIASCVHSEDCN----------------------------LG---LRMIS 506

Query: 307 RMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCG 366
           RM    + P+  T  S L  C+ + + + GK++HG + +    S+  V + LI+MYSKCG
Sbjct: 507 RMRTEGVTPDMATMLSILPVCSLLAAKRQGKEIHGCIFKLGLESDVPVGNVLIEMYSKCG 566

Query: 367 CLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVIL 426
            L +  QVF L   K+  + W  +ISA   +G  ++A+R F +M  + + PD +    I+
Sbjct: 567 SLRNSFQVFKLMKTKD-VVTWTALISACGMYGEGKKAVRAFGEMEAAGIVPDHVAFVAII 625

Query: 427 NACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHD 486
            AC+HSGLV+EGL YF  M  D  I P  EH+AC+++LL+++   D+  + +  MP + D
Sbjct: 626 FACSHSGLVEEGLNYFHRMKKDYKIEPRIEHYACVVDLLSRSALLDKAEDFILSMPLKPD 685

Query: 487 SYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQL 546
           S +W AL   CR+ G+ ++  +V +++I+ NP  +  + L+S+IY+ALGK   V  +R+ 
Sbjct: 686 SSIWGALLSACRMSGDTEIAERVSERIIELNPDDTGYYVLVSNIYAALGKWDQVRSIRKS 745

Query: 547 INERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQMGEDA 598
           I  R  KK+   SW+EI+NKV+ F          + +  +L  LAG M ++ 
Sbjct: 746 IKARGLKKDPGCSWMEIQNKVYVFGTGTKFFEQFEEVNKLLGMLAGLMAKEG 797



 Score =  175 bits (444), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 130/490 (26%), Positives = 227/490 (46%), Gaps = 72/490 (14%)

Query: 26  SLISKGQLSEAISSLDLLAQRGIRLPAETLAF--ILQQCAESKSLKLGKRVHLHLKLTQR 83
           +L   G  SEA+S L    QR IRL  +T  F  ++  CA     ++ K +H        
Sbjct: 89  ALTHNGLFSEALS-LYSETQR-IRLQPDTYTFPSVINACAGLLDFEMAKSIH-------- 138

Query: 84  KTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFD 143
                   + ++ M F  GSD              L+  N ++  Y     +  AR +F+
Sbjct: 139 --------DRVLDMGF--GSD--------------LYIGNALIDMYCRFNDLDKARKVFE 174

Query: 144 NMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKL 203
            M  RDVVSWN++I GY  +G   E L+ Y   R   +  + ++ + +L  C  L  ++ 
Sbjct: 175 EMPLRDVVSWNSLISGYNANGYWNEALEIYYRFRNLGVVPDSYTMSSVLRACGGLGSVEE 234

Query: 204 TRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAK 263
              +HG +   G   +V++++ ++  Y K   L D RR+FD+   RD ++W TM+ GY++
Sbjct: 235 GDIIHGLIEKIGIKKDVIVNNGLLSMYCKFNGLIDGRRIFDKMVLRDAVSWNTMICGYSQ 294

Query: 264 LGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSC 323
           +G  E + KLF E                                M+ + +P+  T +S 
Sbjct: 295 VGLYEESIKLFME--------------------------------MVNQFKPDLLTITSI 322

Query: 324 LCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKEN 383
           L AC  +  L+ GK VH ++I + +  +T   + LI+MY+KCG L   ++VF     K+ 
Sbjct: 323 LQACGHLGDLEFGKYVHDYMITSGYECDTTASNILINMYAKCGNLLASQEVFSGMKCKD- 381

Query: 384 SMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFE 443
           S+ WN+MI+   Q+G  ++A++LF  M+++ VKPD +T  ++L+  T  G +  G     
Sbjct: 382 SVSWNSMINVYIQNGSFDEAMKLFK-MMKTDVKPDSVTYVMLLSMSTQLGDLHLGKELHC 440

Query: 444 SMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNI 503
            +   +G   N      L+++ A+ G     +   E M    D   WN +   C    + 
Sbjct: 441 DLAK-MGFNSNIVVSNTLVDMYAKCGEMGDSLKVFENMK-ARDIITWNTIIASCVHSEDC 498

Query: 504 DMGRKVVDQL 513
           ++G +++ ++
Sbjct: 499 NLGLRMISRM 508



 Score =  174 bits (441), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 119/432 (27%), Positives = 205/432 (47%), Gaps = 43/432 (9%)

Query: 149 DVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVH 208
           +V  WN++I     +G   E L  Y   +R  +  + ++F  ++  C  L + ++ + +H
Sbjct: 79  NVYLWNSIIRALTHNGLFSEALSLYSETQRIRLQPDTYTFPSVINACAGLLDFEMAKSIH 138

Query: 209 GQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDME 268
            +VL  GF S++ I ++++D Y +                                 D++
Sbjct: 139 DRVLDMGFGSDLYIGNALIDMYCR-------------------------------FNDLD 167

Query: 269 SASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACA 328
            A K+F EMP ++ VSW +LI+GY  NG   +ALE++ R   L + P+ +T SS L AC 
Sbjct: 168 KARKVFEEMPLRDVVSWNSLISGYNANGYWNEALEIYYRFRNLGVVPDSYTMSSVLRACG 227

Query: 329 SIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWN 388
            + S++ G  +HG + +   + + IV + L+ MY K   L DGR++FD    ++ ++ WN
Sbjct: 228 GLGSVEEGDIIHGLIEKIGIKKDVIVNNGLLSMYCKFNGLIDGRRIFDKMVLRD-AVSWN 286

Query: 389 TMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHD 448
           TMI   +Q G  E++I+LF +MV +  KPD +T+  IL AC H G ++     F    HD
Sbjct: 287 TMICGYSQVGLYEESIKLFMEMV-NQFKPDLLTITSILQACGHLGDLE-----FGKYVHD 340

Query: 449 LGIIPNQEHHACLIELLAQ--AGCSDQLMNQ--LEKMPYEHDSYLWNALHGVCRIHGNID 504
             I    E       +L    A C + L +Q     M  + DS  WN++  V   +G+ D
Sbjct: 341 YMITSGYECDTTASNILINMYAKCGNLLASQEVFSGMKCK-DSVSWNSMINVYIQNGSFD 399

Query: 505 MGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIE 564
              K+   +       S T+ +L S+ + LG   L +++   + +  F     +S   ++
Sbjct: 400 EAMKLFKMMKTDVKPDSVTYVMLLSMSTQLGDLHLGKELHCDLAKMGFNSNIVVSNTLVD 459

Query: 565 NKVHAFSVSDSL 576
                  + DSL
Sbjct: 460 MYAKCGEMGDSL 471



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 80/303 (26%), Positives = 145/303 (47%), Gaps = 45/303 (14%)

Query: 257 MVSGYAKLGDMESASKLFN-EMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRP 315
           +++ YA   D  S+  +F    P  N   W ++I   T NGL  +AL L++    +R++P
Sbjct: 54  LIAKYAHFRDPTSSFSVFRLASPSNNVYLWNSIIRALTHNGLFSEALSLYSETQRIRLQP 113

Query: 316 NQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVF 375
           + +TF S + ACA ++  +  K +H  ++   F S+  + ++LIDMY +   L+  R+VF
Sbjct: 114 DTYTFPSVINACAGLLDFEMAKSIHDRVLDMGFGSDLYIGNALIDMYCRFNDLDKARKVF 173

Query: 376 DLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLV 435
           +    ++  + WN++IS    +GY  +A+ +++      V PD  T++ +L AC   G V
Sbjct: 174 EEMPLRD-VVSWNSLISGYNANGYWNEALEIYYRFRNLGVVPDSYTMSSVLRACGGLGSV 232

Query: 436 QEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHG 495
           +EG                                 D +   +EK+  + D  + N L  
Sbjct: 233 EEG---------------------------------DIIHGLIEKIGIKKDVIVNNGLLS 259

Query: 496 V-CRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINE--RQF 552
           + C+ +G ID GR++ D+++ ++  S  T   +   YS +G   L E+  +L  E   QF
Sbjct: 260 MYCKFNGLID-GRRIFDKMVLRDAVSWNT---MICGYSQVG---LYEESIKLFMEMVNQF 312

Query: 553 KKE 555
           K +
Sbjct: 313 KPD 315



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 49/178 (27%), Positives = 77/178 (43%), Gaps = 4/178 (2%)

Query: 317 QHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFD 376
           Q  FSS   A AS  +     ++H  +I      + I  + LI  Y+          VF 
Sbjct: 13  QTLFSSISRALASAATTTQLHKLHSLIITLGLHHSVIFSAKLIAKYAHFRDPTSSFSVFR 72

Query: 377 LTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQ 436
           L     N  LWN++I ALT +G   +A+ L+ +  R  ++PD  T   ++NAC  +GL+ 
Sbjct: 73  LASPSNNVYLWNSIIRALTHNGLFSEALSLYSETQRIRLQPDTYTFPSVINAC--AGLLD 130

Query: 437 -EGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNAL 493
            E          D+G   +      LI++  +    D+     E+MP   D   WN+L
Sbjct: 131 FEMAKSIHDRVLDMGFGSDLYIGNALIDMYCRFNDLDKARKVFEEMPLR-DVVSWNSL 187


>gi|62320406|dbj|BAD94843.1| putative protein [Arabidopsis thaliana]
          Length = 720

 Score =  293 bits (751), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 168/590 (28%), Positives = 302/590 (51%), Gaps = 68/590 (11%)

Query: 12  RKNLPNNCLIQSFLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLG 71
           R  +  N +I  +   +S G   + +S    +   GI +   T+  +   CA+S+ + LG
Sbjct: 108 RDVISWNSIINGY---VSNGLAEKGLSVFVQMLVSGIEIDLATIVSVFAGCADSRLISLG 164

Query: 72  KRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYAN 131
           + VH  + +    +      N L+ MY KCG D+D+                        
Sbjct: 165 RAVH-SIGVKACFSREDRFCNTLLDMYSKCG-DLDS------------------------ 198

Query: 132 LGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGI 191
                 A+ +F  M++R VVS+ +MI GYA+ G   E +K ++ +    IS + ++   +
Sbjct: 199 ------AKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAV 252

Query: 192 LTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDV 251
           L  C +   L   ++VH  +       ++ +S++++D YAKC                  
Sbjct: 253 LNCCARYRLLDEGKRVHEWIKENDLGFDIFVSNALMDMYAKC------------------ 294

Query: 252 LTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMI- 310
                        G M+ A  +F+EM  K+ +SW T+I GY++N    +AL LF  ++  
Sbjct: 295 -------------GSMQEAELVFSEMRVKDIISWNTIIGGYSKNCYANEALSLFNLLLEE 341

Query: 311 LRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLND 370
            R  P++ T +  L ACAS+ +   G+++HG+++R  + S+  V +SL+DMY+KCG L  
Sbjct: 342 KRFSPDERTVACVLPACASLSAFDKGREIHGYIMRNGYFSDRHVANSLVDMYAKCGALLL 401

Query: 371 GRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACT 430
              +FD   +K + + W  MI+    HG+ ++AI LF+ M ++ ++ D+I+   +L AC+
Sbjct: 402 AHMLFDDIASK-DLVSWTVMIAGYGMHGFGKEAIALFNQMRQAGIEADEISFVSLLYACS 460

Query: 431 HSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLW 490
           HSGLV EG  +F  M H+  I P  EH+AC++++LA+ G   +    +E MP   D+ +W
Sbjct: 461 HSGLVDEGWRFFNIMRHECKIEPTVEHYACIVDMLARTGDLIKAYRFIENMPIPPDATIW 520

Query: 491 NALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINER 550
            AL   CRIH ++ +  KV +++ +  P+++  + L+++IY+   K   V+++R+ I +R
Sbjct: 521 GALLCGCRIHHDVKLAEKVAEKVFELEPENTGYYVLMANIYAEAEKWEQVKRLRKRIGQR 580

Query: 551 QFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQMGEDAPS 600
             +K    SWIEI+ +V+ F   DS +P  + + + L ++  +M E+  S
Sbjct: 581 GLRKNPGCSWIEIKGRVNIFVAGDSSNPETENIEAFLRKVRARMIEEGYS 630



 Score =  147 bits (371), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 89/309 (28%), Positives = 152/309 (49%), Gaps = 33/309 (10%)

Query: 123 NNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSIS 182
           N++++ Y     +  AR +FD M ERDV+SWN++I GY  +G  E+GL  +  +    I 
Sbjct: 83  NSLVAFYLKNQRVDSARKVFDEMTERDVISWNSIINGYVSNGLAEKGLSVFVQMLVSGIE 142

Query: 183 CNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRL 242
            +  +   +   C     + L R VH   +   F       ++++D Y+KCG+L  A+ +
Sbjct: 143 IDLATIVSVFAGCADSRLISLGRAVHSIGVKACFSREDRFCNTLLDMYSKCGDLDSAKAV 202

Query: 243 FDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKAL 302
           F E   R V+++T+M++GYA+ G    A KLF EM E+                      
Sbjct: 203 FREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEG--------------------- 241

Query: 303 ELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMY 362
                     I P+ +T ++ L  CA    L  GK+VH ++   +   +  V ++L+DMY
Sbjct: 242 ----------ISPDVYTVTAVLNCCARYRLLDEGKRVHEWIKENDLGFDIFVSNALMDMY 291

Query: 363 SKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSS-VKPDKIT 421
           +KCG + +   VF     K + + WNT+I   +++ Y  +A+ LF+ ++      PD+ T
Sbjct: 292 AKCGSMQEAELVFSEMRVK-DIISWNTIIGGYSKNCYANEALSLFNLLLEEKRFSPDERT 350

Query: 422 LAVILNACT 430
           +A +L AC 
Sbjct: 351 VACVLPACA 359



 Score =  128 bits (321), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 90/359 (25%), Positives = 160/359 (44%), Gaps = 44/359 (12%)

Query: 142 FDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEEL 201
           FD +     + WN ++   AKSG     +  +K +    +  + ++F+ +      L  +
Sbjct: 1   FDEVKIEKALFWNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRSV 60

Query: 202 KLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGY 261
               Q+HG +L +GF     + +S+V  Y K   +  AR++FDE   RDV++W ++++GY
Sbjct: 61  HGGEQLHGFILKSGFGERNSVGNSLVAFYLKNQRVDSARKVFDEMTERDVISWNSIINGY 120

Query: 262 AKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFS 321
                                            NGL +K L +F +M++  I  +  T  
Sbjct: 121 VS-------------------------------NGLAEKGLSVFVQMLVSGIEIDLATIV 149

Query: 322 SCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVF-DLTDN 380
           S    CA    +  G+ VH   ++  F       ++L+DMYSKCG L+  + VF +++D 
Sbjct: 150 SVFAGCADSRLISLGRAVHSIGVKACFSREDRFCNTLLDMYSKCGDLDSAKAVFREMSDR 209

Query: 381 KENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLT 440
              S  + +MI+   + G   +A++LF +M    + PD  T+  +LN C    L+ EG  
Sbjct: 210 SVVS--YTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARYRLLDEGKR 267

Query: 441 YFESMT-HDLG---IIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHG 495
             E +  +DLG    + N      L+++ A+ G   +      +M  + D   WN + G
Sbjct: 268 VHEWIKENDLGFDIFVSNA-----LMDMYAKCGSMQEAELVFSEMRVK-DIISWNTIIG 320


>gi|15234006|ref|NP_193610.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206861|sp|Q9SN39.1|PP320_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g18750, chloroplastic; Flags: Precursor
 gi|4539394|emb|CAB37460.1| putative protein [Arabidopsis thaliana]
 gi|7268669|emb|CAB78877.1| putative protein [Arabidopsis thaliana]
 gi|332658686|gb|AEE84086.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 871

 Score =  293 bits (751), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 165/574 (28%), Positives = 296/574 (51%), Gaps = 65/574 (11%)

Query: 28  ISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPT 87
           +S G   + +S    +   GI +   T+  +   CA+S+ + LG+ VH  + +    +  
Sbjct: 272 VSNGLAEKGLSVFVQMLVSGIEIDLATIVSVFAGCADSRLISLGRAVH-SIGVKACFSRE 330

Query: 88  TFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAE 147
               N L+ MY KCG D+D+                              A+ +F  M++
Sbjct: 331 DRFCNTLLDMYSKCG-DLDS------------------------------AKAVFREMSD 359

Query: 148 RDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQV 207
           R VVS+ +MI GYA+ G   E +K ++ +    IS + ++   +L  C +   L   ++V
Sbjct: 360 RSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARYRLLDEGKRV 419

Query: 208 HGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDM 267
           H  +       ++ +S++++D YAKC                               G M
Sbjct: 420 HEWIKENDLGFDIFVSNALMDMYAKC-------------------------------GSM 448

Query: 268 ESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMI-LRIRPNQHTFSSCLCA 326
           + A  +F+EM  K+ +SW T+I GY++N    +AL LF  ++   R  P++ T +  L A
Sbjct: 449 QEAELVFSEMRVKDIISWNTIIGGYSKNCYANEALSLFNLLLEEKRFSPDERTVACVLPA 508

Query: 327 CASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSML 386
           CAS+ +   G+++HG+++R  + S+  V +SL+DMY+KCG L     +FD   +K+  + 
Sbjct: 509 CASLSAFDKGREIHGYIMRNGYFSDRHVANSLVDMYAKCGALLLAHMLFDDIASKD-LVS 567

Query: 387 WNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMT 446
           W  MI+    HG+ ++AI LF+ M ++ ++ D+I+   +L AC+HSGLV EG  +F  M 
Sbjct: 568 WTVMIAGYGMHGFGKEAIALFNQMRQAGIEADEISFVSLLYACSHSGLVDEGWRFFNIMR 627

Query: 447 HDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMG 506
           H+  I P  EH+AC++++LA+ G   +    +E MP   D+ +W AL   CRIH ++ + 
Sbjct: 628 HECKIEPTVEHYACIVDMLARTGDLIKAYRFIENMPIPPDATIWGALLCGCRIHHDVKLA 687

Query: 507 RKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENK 566
            KV +++ +  P+++  + L+++IY+   K   V+++R+ I +R  +K    SWIEI+ +
Sbjct: 688 EKVAEKVFELEPENTGYYVLMANIYAEAEKWEQVKRLRKRIGQRGLRKNPGCSWIEIKGR 747

Query: 567 VHAFSVSDSLHPMRDVLYSVLEQLAGQMGEDAPS 600
           V+ F   DS +P  + + + L ++  +M E+  S
Sbjct: 748 VNIFVAGDSSNPETENIEAFLRKVRARMIEEGYS 781



 Score =  145 bits (366), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 114/451 (25%), Positives = 196/451 (43%), Gaps = 76/451 (16%)

Query: 50  LPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARK 109
           +   TL  +LQ CA+SKSLK GK V   ++       +  L + L  MY  CG   +A +
Sbjct: 92  IDPRTLCSVLQLCADSKSLKDGKEVDNFIRGNGFVIDSN-LGSKLSLMYTNCGDLKEASR 150

Query: 110 VFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEG 169
           VFD++ ++                     + LF          WN ++   AKSG     
Sbjct: 151 VFDEVKIE---------------------KALF----------WNILMNELAKSGDFSGS 179

Query: 170 LKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDA 229
           +  +K +    +  + ++F+ +      L  +    Q+HG +L +GF     + +S+V  
Sbjct: 180 IGLFKKMMSSGVEMDSYTFSCVSKSFSSLRSVHGGEQLHGFILKSGFGERNSVGNSLVAF 239

Query: 230 YAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLI 289
           Y K   +  AR++FDE   RDV++W ++++GY                            
Sbjct: 240 YLKNQRVDSARKVFDEMTERDVISWNSIINGYVS-------------------------- 273

Query: 290 AGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFR 349
                NGL +K L +F +M++  I  +  T  S    CA    +  G+ VH   ++  F 
Sbjct: 274 -----NGLAEKGLSVFVQMLVSGIEIDLATIVSVFAGCADSRLISLGRAVHSIGVKACFS 328

Query: 350 SNTIVMSSLIDMYSKCGCLNDGRQVF-DLTDNKENSMLWNTMISALTQHGYDEQAIRLFH 408
                 ++L+DMYSKCG L+  + VF +++D    S  + +MI+   + G   +A++LF 
Sbjct: 329 REDRFCNTLLDMYSKCGDLDSAKAVFREMSDRSVVS--YTSMIAGYAREGLAGEAVKLFE 386

Query: 409 DMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMT-HDLG---IIPNQEHHACLIEL 464
           +M    + PD  T+  +LN C    L+ EG    E +  +DLG    + N      L+++
Sbjct: 387 EMEEEGISPDVYTVTAVLNCCARYRLLDEGKRVHEWIKENDLGFDIFVSNA-----LMDM 441

Query: 465 LAQAGCSDQLMNQLEKMPYEHDSYLWNALHG 495
            A+ G   +      +M  + D   WN + G
Sbjct: 442 YAKCGSMQEAELVFSEMRVK-DIISWNTIIG 471



 Score =  131 bits (330), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 87/296 (29%), Positives = 146/296 (49%), Gaps = 39/296 (13%)

Query: 21  IQSFLSLIS----KGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHL 76
           + S+ S+I+    +G   EA+   + + + GI     T+  +L  CA  + L  GKRVH 
Sbjct: 362 VVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARYRLLDEGKRVHE 421

Query: 77  HLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMK 136
            +K         F+SN L+ MY KCGS  +A  VF ++ VK++ S+N ++ GY+      
Sbjct: 422 WIKENDLGFDI-FVSNALMDMYAKCGSMQEAELVFSEMRVKDIISWNTIIGGYSKNCYAN 480

Query: 137 HARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICV 196
            A +LF+ + E                             +RFS   +E + A +L  C 
Sbjct: 481 EALSLFNLLLEE----------------------------KRFSP--DERTVACVLPACA 510

Query: 197 KLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTT 256
            L      R++HG ++  G+ S+  +++S+VD YAKCG L  A  LFD+  ++D+++WT 
Sbjct: 511 SLSAFDKGREIHGYIMRNGYFSDRHVANSLVDMYAKCGALLLAHMLFDDIASKDLVSWTV 570

Query: 257 MVSGYAKLGDMESASKLFNEMP----EKNPVSWTTLIAGYTRNGLGQKALELFTRM 308
           M++GY   G  + A  LFN+M     E + +S+ +L+   + +GL  +    F  M
Sbjct: 571 MIAGYGMHGFGKEAIALFNQMRQAGIEADEISFVSLLYACSHSGLVDEGWRFFNIM 626



 Score =  105 bits (261), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 78/328 (23%), Positives = 146/328 (44%), Gaps = 41/328 (12%)

Query: 147 ERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQ 206
           +R V   NT +  + +SG +E  +K   V  ++ I  +  +   +L +C   + LK  ++
Sbjct: 58  DRSVTDANTQLRRFCESGNLENAVKLLCVSGKWDI--DPRTLCSVLQLCADSKSLKDGKE 115

Query: 207 VHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGD 266
           V   +   GF+ +  + S +   Y  CG+L +A R+FDE      L W  +++  AK GD
Sbjct: 116 VDNFIRGNGFVIDSNLGSKLSLMYTNCGDLKEASRVFDEVKIEKALFWNILMNELAKSGD 175

Query: 267 MESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCA 326
                                             ++ LF +MM   +  + +TFS    +
Sbjct: 176 FSG-------------------------------SIGLFKKMMSSGVEMDSYTFSCVSKS 204

Query: 327 CASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSML 386
            +S+ S+  G+Q+HGF++++ F     V +SL+  Y K   ++  R+VFD    + + + 
Sbjct: 205 FSSLRSVHGGEQLHGFILKSGFGERNSVGNSLVAFYLKNQRVDSARKVFDEMTER-DVIS 263

Query: 387 WNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMT 446
           WN++I+    +G  E+ + +F  M+ S ++ D  T+  +   C  S L+  G        
Sbjct: 264 WNSIINGYVSNGLAEKGLSVFVQMLVSGIEIDLATIVSVFAGCADSRLISLGRA-----V 318

Query: 447 HDLGIIP--NQEHHACLIELLAQAGCSD 472
           H +G+    ++E   C   L   + C D
Sbjct: 319 HSIGVKACFSREDRFCNTLLDMYSKCGD 346


>gi|225439799|ref|XP_002273893.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g37310-like [Vitis vinifera]
          Length = 667

 Score =  293 bits (751), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 157/485 (32%), Positives = 260/485 (53%), Gaps = 2/485 (0%)

Query: 118 NLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFY-KVL 176
           ++F  N +++ Y+       AR LFD M +RD+VSWN+MI GY++ G  E+  + Y K+L
Sbjct: 173 DIFVVNALITYYSRCDEYGIARILFDRMHDRDIVSWNSMIAGYSQGGFYEDCKELYRKML 232

Query: 177 RRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGEL 236
               +  N  +   +L  C +  +L    +VH  ++      +V   +S++  YAKCG L
Sbjct: 233 DSTGLRPNGVTVVSVLQACAQTNDLVFGMKVHQFIIERKVEMDVSAHNSLIGLYAKCGSL 292

Query: 237 SDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNG 296
             AR LF+E   +D +T+ ++VSGY   G ++ A  LF EM      +W  +I+G  +N 
Sbjct: 293 DYARELFNEMSNKDEVTYGSIVSGYMTHGFVDKAMDLFREMKNPRLSTWNAVISGLVQNN 352

Query: 297 LGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMS 356
             +  LEL   M     RPN  T SS L   +   +LK GK +H + IR  +  N  V +
Sbjct: 353 CNEGILELVQEMQEFGFRPNAVTLSSILPTFSCFSNLKGGKAIHAYAIRNGYAHNIYVAT 412

Query: 357 SLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVK 416
           S+ID Y+K G L   + VFD + ++ + ++W  +ISA + HG    A+RLF DM+ +  +
Sbjct: 413 SIIDAYAKLGFLRGAQWVFDQSKDR-SLIVWTAIISAYSAHGDANAALRLFGDMLSNGTQ 471

Query: 417 PDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMN 476
           PD +T   +L AC HSG+V E    F+ M    G  P  EH+AC++ +L++AG   +   
Sbjct: 472 PDPVTFTAVLAACAHSGMVNEAWKIFDEMFLKYGFQPCVEHYACMVGVLSRAGMLSEAAE 531

Query: 477 QLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGK 536
            + KMP E ++ +W AL     + G++++G+ V D L +  P+++  + +++++YS  G+
Sbjct: 532 FICKMPIEPNAKVWGALLNGVSVSGDVELGKFVCDHLFNMEPENTGNYVIMANLYSQAGR 591

Query: 537 GRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQMGE 596
               E +R+ + +   KK    SWIE    + +F   D      + +Y +LE L G M E
Sbjct: 592 WEEAENIREKMKKIGLKKIPGTSWIETSGGLRSFIARDVSSERSEEIYGMLEGLLGLMRE 651

Query: 597 DAPSL 601
           +  +L
Sbjct: 652 EGYTL 656



 Score =  156 bits (395), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 112/407 (27%), Positives = 200/407 (49%), Gaps = 21/407 (5%)

Query: 23  SFLSLISKGQLSEAISSL--DLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKL 80
           S ++  S+G   E    L   +L   G+R    T+  +LQ CA++  L  G +VH  +  
Sbjct: 210 SMIAGYSQGGFYEDCKELYRKMLDSTGLRPNGVTVVSVLQACAQTNDLVFGMKVHQFI-- 267

Query: 81  TQRKTPTTFLS-NHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHAR 139
            +RK      + N LI +Y KCGS   AR++F+++  K+  +Y +++SGY   G +  A 
Sbjct: 268 IERKVEMDVSAHNSLIGLYAKCGSLDYARELFNEMSNKDEVTYGSIVSGYMTHGFVDKAM 327

Query: 140 NLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLE 199
           +LF  M    + +WN +I G  ++   E  L+  + ++ F    N  + + IL       
Sbjct: 328 DLFREMKNPRLSTWNAVISGLVQNNCNEGILELVQEMQEFGFRPNAVTLSSILPTFSCFS 387

Query: 200 ELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVS 259
            LK  + +H   +  G+  N+ +++SI+DAYAK G L  A+ +FD++  R ++ WT ++S
Sbjct: 388 NLKGGKAIHAYAIRNGYAHNIYVATSIIDAYAKLGFLRGAQWVFDQSKDRSLIVWTAIIS 447

Query: 260 GYAKLGDMESASKLFNEM----PEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRP 315
            Y+  GD  +A +LF +M     + +PV++T ++A    +G+  +A ++F  M +     
Sbjct: 448 AYSAHGDANAALRLFGDMLSNGTQPDPVTFTAVLAACAHSGMVNEAWKIFDEMFL----- 502

Query: 316 NQHTFSSCL--CACASIVSLKHG--KQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDG 371
            ++ F  C+   AC   V  + G   +   F+ +     N  V  +L++  S  G +  G
Sbjct: 503 -KYGFQPCVEHYACMVGVLSRAGMLSEAAEFICKMPIEPNAKVWGALLNGVSVSGDVELG 561

Query: 372 RQVFDLTDNKENSMLWNTMISA--LTQHGYDEQAIRLFHDMVRSSVK 416
           + V D   N E     N +I A   +Q G  E+A  +   M +  +K
Sbjct: 562 KFVCDHLFNMEPENTGNYVIMANLYSQAGRWEEAENIREKMKKIGLK 608



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 102/405 (25%), Positives = 179/405 (44%), Gaps = 80/405 (19%)

Query: 58  ILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVK 117
           ++Q C++ + L+  K++H  + L+   TP  FL++ LI+ Y K     +A KVFDK    
Sbjct: 40  LIQHCSDHRLLRQAKQLHARIVLSSL-TPDNFLASKLITFYSKSNHLYEAHKVFDK---- 94

Query: 118 NLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGA---VEEGLKFYK 174
                                      + ++++ SWN M+IGY+           L    
Sbjct: 95  ---------------------------ILDKNIFSWNAMLIGYSIHNMHVHTLNLLSSLL 127

Query: 175 VLRRFSISCNEFSFAGIL-TICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKC 233
                ++  + F+   +L  + V   +  L ++V   VL  GF S++ + ++++  Y++C
Sbjct: 128 PSYSLTLKPDNFTITCVLKALSVLFPDSILAKEVQCFVLRHGFDSDIFVVNALITYYSRC 187

Query: 234 GELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYT 293
            E   AR LFD    RD+++W +M++GY++ G  E   +L+ +M +              
Sbjct: 188 DEYGIARILFDRMHDRDIVSWNSMIAGYSQGGFYEDCKELYRKMLDSTG----------- 236

Query: 294 RNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTI 353
                              +RPN  T  S L ACA    L  G +VH F+I      +  
Sbjct: 237 -------------------LRPNGVTVVSVLQACAQTNDLVFGMKVHQFIIERKVEMDVS 277

Query: 354 VMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRS 413
             +SLI +Y+KCG L+  R++F+   NK+  + + +++S    HG+ ++A+ LF +M   
Sbjct: 278 AHNSLIGLYAKCGSLDYARELFNEMSNKD-EVTYGSIVSGYMTHGFVDKAMDLFREM--- 333

Query: 414 SVKPDKITLAVILNACTHSGLVQ----EGLTYFESMTHDLGIIPN 454
              P   T   ++     SGLVQ    EG+        + G  PN
Sbjct: 334 -KNPRLSTWNAVI-----SGLVQNNCNEGILELVQEMQEFGFRPN 372



 Score = 82.8 bits (203), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 75/367 (20%), Positives = 163/367 (44%), Gaps = 39/367 (10%)

Query: 187 SFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDET 246
           +F  ++  C     L+  +Q+H +++++    +  ++S ++  Y+K   L +A ++FD+ 
Sbjct: 36  AFGRLIQHCSDHRLLRQAKQLHARIVLSSLTPDNFLASKLITFYSKSNHLYEAHKVFDKI 95

Query: 247 DARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFT 306
             +++ +W  M+ GY+ + +M   +                              L    
Sbjct: 96  LDKNIFSWNAMLIGYS-IHNMHVHT---------------------------LNLLSSLL 127

Query: 307 RMMILRIRPNQHTFSSCLCACASIVSLK-HGKQVHGFLIRTNFRSNTIVMSSLIDMYSKC 365
               L ++P+  T +  L A + +       K+V  F++R  F S+  V+++LI  YS+C
Sbjct: 128 PSYSLTLKPDNFTITCVLKALSVLFPDSILAKEVQCFVLRHGFDSDIFVVNALITYYSRC 187

Query: 366 GCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSS-VKPDKITLAV 424
                 R +FD   +++  + WN+MI+  +Q G+ E    L+  M+ S+ ++P+ +T+  
Sbjct: 188 DEYGIARILFDRMHDRD-IVSWNSMIAGYSQGGFYEDCKELYRKMLDSTGLRPNGVTVVS 246

Query: 425 ILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYE 484
           +L AC  +  +  G+   + +  +  +  +   H  LI L A+ G  D       +M   
Sbjct: 247 VLQACAQTNDLVFGMKVHQFII-ERKVEMDVSAHNSLIGLYAKCGSLDYARELFNEMS-N 304

Query: 485 HDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVR 544
            D   + ++      HG +D    +  ++  +NP+ S      +++ S L +    E + 
Sbjct: 305 KDEVTYGSIVSGYMTHGFVDKAMDLFREM--KNPRLST----WNAVISGLVQNNCNEGIL 358

Query: 545 QLINERQ 551
           +L+ E Q
Sbjct: 359 ELVQEMQ 365


>gi|225452893|ref|XP_002278719.1| PREDICTED: pentatricopeptide repeat-containing protein At5g15340,
           mitochondrial-like [Vitis vinifera]
          Length = 632

 Score =  293 bits (751), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 163/539 (30%), Positives = 284/539 (52%), Gaps = 38/539 (7%)

Query: 57  FILQQCAESKSLKLGKRVHLHLKLTQ-RKTPTTFLSNHLISMYFKCGSDVDARKVFDKIP 115
           F+L+ CA   SL +G+R+H  +  T     P TFL                         
Sbjct: 18  FLLRSCARESSLDIGERLHATIITTGIAGAPETFL------------------------- 52

Query: 116 VKNLFSYNNMLSGYANLGMMKHARNLFDNM--AERDVVSWNTMIIGYAKSGAVEEGLKFY 173
                 +N +L  YA+ G    AR +FD +  + +D V W T++  + +    +E L  +
Sbjct: 53  ------HNALLQFYASCGCAWQARKVFDEIPHSHKDTVDWTTLMGCFVRHNVSDEALLIF 106

Query: 174 KVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKC 233
             +RR  +  +E +   +   C +L ++ +  Q HG ++  G        ++++D YAK 
Sbjct: 107 VEMRRCGVKPDEVTLVCLFGGCARLGDVVVGAQGHGCMVKMGLGGVEKACNAVMDMYAKS 166

Query: 234 GELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYT 293
           G + +ARR+F E   + V++WT ++ G  +   + +   +F+EMPE+N V+WT +IAGY 
Sbjct: 167 GLMGEARRVFYEMKGQSVVSWTVILDGVIRSEGVRNGRVVFDEMPERNEVAWTIMIAGYL 226

Query: 294 RNGLGQKALELFTRMMI-LRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRS-N 351
            +GL Q++  L   M+  L +  N  T  S L AC+    L  G+ VH + ++T  +  N
Sbjct: 227 DSGLTQESFALVREMIFDLEMELNYVTLCSILTACSQSGDLMMGRWVHAYALKTKEKELN 286

Query: 352 TIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMV 411
            +V ++++DMY+KCG ++   + F     + N + WN M+S L  HG    A+ +F  M 
Sbjct: 287 IMVGTAMVDMYAKCGRIHIAFKFFKKMPQR-NVVSWNAMLSGLAMHGLGRAALDIFPQMF 345

Query: 412 RSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCS 471
           + + KPD +T   +L+AC+HSGLV +G  YF ++    GI P  EH+AC+++LL +AG  
Sbjct: 346 KEA-KPDDVTFTSVLSACSHSGLVDQGCFYFGNLESVYGITPKVEHYACMVDLLGRAGRL 404

Query: 472 DQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIY 531
           ++    + +MP   +  +  +L G C IHG + +G  ++ +L+  +PQ++  H LLS++Y
Sbjct: 405 EEAEILVREMPIRPNEVVLGSLLGSCSIHGKLQLGEHLLQELVQLDPQNTEYHILLSNMY 464

Query: 532 SALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQL 590
           +  GK      +RQ++ +R  KK   +S I +  +VH FS  D  HP    +Y++L+++
Sbjct: 465 ALAGKQNRANSLRQVLKKRGIKKVPGMSSIHVGGQVHQFSAGDKSHPRTREVYNMLDEM 523



 Score = 73.2 bits (178), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 41/123 (33%), Positives = 69/123 (56%), Gaps = 3/123 (2%)

Query: 54  TLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDK 113
           TL  IL  C++S  L +G+ VH +   T+ K     +   ++ MY KCG    A K F K
Sbjct: 253 TLCSILTACSQSGDLMMGRWVHAYALKTKEKELNIMVGTAMVDMYAKCGRIHIAFKFFKK 312

Query: 114 IPVKNLFSYNNMLSGYANLGMMKHARNLFDNM---AERDVVSWNTMIIGYAKSGAVEEGL 170
           +P +N+ S+N MLSG A  G+ + A ++F  M   A+ D V++ +++   + SG V++G 
Sbjct: 313 MPQRNVVSWNAMLSGLAMHGLGRAALDIFPQMFKEAKPDDVTFTSVLSACSHSGLVDQGC 372

Query: 171 KFY 173
            ++
Sbjct: 373 FYF 375


>gi|449438685|ref|XP_004137118.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g02330-like [Cucumis sativus]
 gi|449528041|ref|XP_004171015.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g02330-like [Cucumis sativus]
          Length = 868

 Score =  293 bits (751), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 146/487 (29%), Positives = 257/487 (52%), Gaps = 34/487 (6%)

Query: 118 NLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLR 177
           N+   N +L  Y   G +  A  LFD M  RD VSWN +I    ++ +  + L  +  + 
Sbjct: 393 NICVANAILDMYGKCGALVEASGLFDEMEIRDPVSWNAIITACEQNESEGKTLSHFGAML 452

Query: 178 RFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELS 237
           R  +  +EF++  +L  C          +VHG+++ +G    + + S++VD Y+KCG   
Sbjct: 453 RSKMEPDEFTYGSVLKACAGQRAFSNGMEVHGRIIKSGMGLKMFVGSALVDMYSKCGM-- 510

Query: 238 DARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGL 297
                                        ME A K+   + E+  VSW  +I+G++    
Sbjct: 511 -----------------------------MEEAEKIHYRLEEQTMVSWNAIISGFSLQKK 541

Query: 298 GQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSS 357
            + +   F+ M+ + + P+  T+++ L  CA++ ++  GKQ+H  +I+    S+  + S+
Sbjct: 542 SEDSQRFFSHMLEMGVEPDNFTYATVLDTCANLATVGLGKQIHAQMIKLELLSDVYITST 601

Query: 358 LIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKP 417
           L+DMYSKCG ++D   +F     K +S+ WN MI     HG  E+A+ LF  M+  ++KP
Sbjct: 602 LVDMYSKCGNMHDSLLMFRKAP-KRDSVTWNAMICGFAYHGLGEEALELFEHMLHENIKP 660

Query: 418 DKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQ 477
           +  T   +L AC+H G  ++GL YF+ M     + P  EH++C++++L ++G  ++ +  
Sbjct: 661 NHATFVSVLRACSHVGNAKKGLFYFQKMASIYALEPQLEHYSCMVDILGRSGQVEEALRL 720

Query: 478 LEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKG 537
           ++ MP+E D+ +W  L  +C+I GN+++  K    L+  +P+ S+ + LLS+IY+  G  
Sbjct: 721 IQDMPFEADAIIWRTLLSICKIQGNVEVAEKAASSLLKLDPEDSSAYTLLSNIYADAGMW 780

Query: 538 RLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQMGED 597
           + V K+RQ +     KKE   SWIE++++VH F V D  HP  +++YS+L+ L   M   
Sbjct: 781 QQVSKIRQTMRSHNLKKEPGCSWIEVKDEVHTFLVCDKAHPKCEMIYSLLDLLICDMRRS 840

Query: 598 --APSLD 602
             AP +D
Sbjct: 841 GCAPEID 847



 Score =  202 bits (514), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 132/451 (29%), Positives = 230/451 (50%), Gaps = 44/451 (9%)

Query: 53  ETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFD 112
           +T + I Q+C+  ++LK GK  H H+ L+   TPT F++N LI MY KC +   A KVF+
Sbjct: 25  KTFSHIFQECSNRRALKPGKEAHAHMILSGF-TPTVFVTNCLIQMYVKCCALEYAYKVFE 83

Query: 113 KIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAER-DVVSWNTMIIGYAKSGAVEEGLK 171
           ++P +++ S+N M+ G A  G M+ A+ +F++M    DVVSWN++I GY ++G +++ + 
Sbjct: 84  EMPQRDIVSWNTMVFGCAGAGRMELAQAVFNSMPHHGDVVSWNSLISGYLQNGDIQKSIA 143

Query: 172 FYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYA 231
            +  +R   +  +  + A  L IC  LE+  L  Q+HG  +  GF  +VV  S++VD YA
Sbjct: 144 VFLKMRDLGVMFDHTTLAVSLKICSLLEDQVLGIQIHGIAVQMGFDYDVVTGSALVDMYA 203

Query: 232 KCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAG 291
           KC  L D+  +F E   ++ ++W+  ++G  +   +    KLF EM              
Sbjct: 204 KCNSLEDSLDVFSELPDKNWISWSAAIAGCVQNDQLLRGLKLFKEM-------------- 249

Query: 292 YTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSN 351
             R G+G                 +Q T++S   +CA + + + G Q+H   ++T+F S+
Sbjct: 250 -QRKGIG----------------VSQSTYASVFRSCAGLSASRLGTQLHCHALKTDFGSD 292

Query: 352 TIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMV 411
            IV ++ +DMY+KC  ++D  ++F L  +  N   +N MI    ++    QA +LF  + 
Sbjct: 293 VIVGTATLDMYAKCDNMSDAYKLFSLLPD-HNLQSYNAMIIGYARNEQGFQAFKLFLQLQ 351

Query: 412 RSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHAC----LIELLAQ 467
           ++S   D+++L+  L+A        EGL       H L I  N   + C    ++++  +
Sbjct: 352 KNSFSFDEVSLSGALSAAAVIKGHSEGLQ-----LHGLAIKSNLSSNICVANAILDMYGK 406

Query: 468 AGCSDQLMNQLEKMPYEHDSYLWNALHGVCR 498
            G   +     ++M    D   WNA+   C 
Sbjct: 407 CGALVEASGLFDEMEIR-DPVSWNAIITACE 436



 Score =  170 bits (430), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 144/572 (25%), Positives = 246/572 (43%), Gaps = 111/572 (19%)

Query: 28  ISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPT 87
           +   QL   +     + ++GI +   T A + + CA   + +LG ++H H  L       
Sbjct: 234 VQNDQLLRGLKLFKEMQRKGIGVSQSTYASVFRSCAGLSASRLGTQLHCH-ALKTDFGSD 292

Query: 88  TFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAE 147
             +    + MY KC +  DA K+F  +P  NL SYN M+ GY        ARN       
Sbjct: 293 VIVGTATLDMYAKCDNMSDAYKLFSLLPDHNLQSYNAMIIGY--------ARN------- 337

Query: 148 RDVVSWNTMIIGYAKSGAVEEGLKFYKV---LRRFSISCNEFSFAGILTICVKLEELKLT 204
                              E+G + +K+   L++ S S +E S +G L+    ++     
Sbjct: 338 -------------------EQGFQAFKLFLQLQKNSFSFDEVSLSGALSAAAVIKGHSEG 378

Query: 205 RQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKL 264
            Q+HG  + +   SN+ ++++I+D Y KCG L +A  LFDE + RD              
Sbjct: 379 LQLHGLAIKSNLSSNICVANAILDMYGKCGALVEASGLFDEMEIRD-------------- 424

Query: 265 GDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCL 324
                            PVSW  +I    +N    K L  F  M+  ++ P++ T+ S L
Sbjct: 425 -----------------PVSWNAIITACEQNESEGKTLSHFGAMLRSKMEPDEFTYGSVL 467

Query: 325 CACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQV-FDLTDNKEN 383
            ACA   +  +G +VHG +I++       V S+L+DMYSKCG + +  ++ + L   +E 
Sbjct: 468 KACAGQRAFSNGMEVHGRIIKSGMGLKMFVGSALVDMYSKCGMMEEAEKIHYRL---EEQ 524

Query: 384 SML-WNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYF 442
           +M+ WN +IS  +     E + R F  M+   V+PD  T A +L+ C +   V  G    
Sbjct: 525 TMVSWNAIISGFSLQKKSEDSQRFFSHMLEMGVEPDNFTYATVLDTCANLATVGLGKQIH 584

Query: 443 ESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGN 502
             M   L ++ +    + L+++ ++ G     +    K P + DS  WNA+      HG 
Sbjct: 585 AQMI-KLELLSDVYITSTLVDMYSKCGNMHDSLLMFRKAP-KRDSVTWNAMICGFAYHGL 642

Query: 503 IDMGRKVVDQLIDQNPQ----------------SSATHGL-----LSSIYS--------- 532
            +   ++ + ++ +N +                 +A  GL     ++SIY+         
Sbjct: 643 GEEALELFEHMLHENIKPNHATFVSVLRACSHVGNAKKGLFYFQKMASIYALEPQLEHYS 702

Query: 533 ----ALGKGRLVEKVRQLINERQFKKEQAISW 560
                LG+   VE+  +LI +  F+ + AI W
Sbjct: 703 CMVDILGRSGQVEEALRLIQDMPFEAD-AIIW 733



 Score =  153 bits (386), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 120/487 (24%), Positives = 216/487 (44%), Gaps = 76/487 (15%)

Query: 14  NLPNNCLIQSFLSLIS----KGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLK 69
           ++P++  + S+ SLIS     G + ++I+    +   G+     TLA  L+ C+  +   
Sbjct: 115 SMPHHGDVVSWNSLISGYLQNGDIQKSIAVFLKMRDLGVMFDHTTLAVSLKICSLLEDQV 174

Query: 70  LGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGY 129
           LG ++H  + +           + L+ MY KC S  D+  VF ++P KN           
Sbjct: 175 LGIQIH-GIAVQMGFDYDVVTGSALVDMYAKCNSLEDSLDVFSELPDKNW---------- 223

Query: 130 ANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFA 189
                                +SW+  I G  ++  +  GLK +K ++R  I  ++ ++A
Sbjct: 224 ---------------------ISWSAAIAGCVQNDQLLRGLKLFKEMQRKGIGVSQSTYA 262

Query: 190 GILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDAR 249
            +   C  L   +L  Q+H   L T F S+V++ ++ +D YAKC  +SDA +LF      
Sbjct: 263 SVFRSCAGLSASRLGTQLHCHALKTDFGSDVIVGTATLDMYAKCDNMSDAYKLFSLLPDH 322

Query: 250 DVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMM 309
           ++ ++  M+ GYA                               RN  G +A +LF ++ 
Sbjct: 323 NLQSYNAMIIGYA-------------------------------RNEQGFQAFKLFLQLQ 351

Query: 310 ILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLN 369
                 ++ + S  L A A I     G Q+HG  I++N  SN  V ++++DMY KCG L 
Sbjct: 352 KNSFSFDEVSLSGALSAAAVIKGHSEGLQLHGLAIKSNLSSNICVANAILDMYGKCGALV 411

Query: 370 DGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNAC 429
           +   +FD  + + + + WN +I+A  Q+  + + +  F  M+RS ++PD+ T   +L AC
Sbjct: 412 EASGLFDEMEIR-DPVSWNAIITACEQNESEGKTLSHFGAMLRSKMEPDEFTYGSVLKAC 470

Query: 430 THSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPY---EHD 486
                   G+     +    G+       + L+++ ++ G    +M + EK+ Y   E  
Sbjct: 471 AGQRAFSNGMEVHGRIIKS-GMGLKMFVGSALVDMYSKCG----MMEEAEKIHYRLEEQT 525

Query: 487 SYLWNAL 493
              WNA+
Sbjct: 526 MVSWNAI 532



 Score =  105 bits (263), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 85/390 (21%), Positives = 159/390 (40%), Gaps = 112/390 (28%)

Query: 90  LSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSG--------------------- 128
           ++N ++ MY KCG+ V+A  +FD++ +++  S+N +++                      
Sbjct: 396 VANAILDMYGKCGALVEASGLFDEMEIRDPVSWNAIITACEQNESEGKTLSHFGAMLRSK 455

Query: 129 -------YANL------------GMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEG 169
                  Y ++            GM  H R +   M  +  V  + ++  Y+K G +EE 
Sbjct: 456 MEPDEFTYGSVLKACAGQRAFSNGMEVHGRIIKSGMGLKMFVG-SALVDMYSKCGMMEEA 514

Query: 170 LK-------------------------------FYKVLRRFSISCNEFSFAGILTICVKL 198
            K                               F+  +    +  + F++A +L  C  L
Sbjct: 515 EKIHYRLEEQTMVSWNAIISGFSLQKKSEDSQRFFSHMLEMGVEPDNFTYATVLDTCANL 574

Query: 199 EELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMV 258
             + L +Q+H Q++    LS+V I+S++VD Y+KCG + D+  +F +   RD +TW  M+
Sbjct: 575 ATVGLGKQIHAQMIKLELLSDVYITSTLVDMYSKCGNMHDSLLMFRKAPKRDSVTWNAMI 634

Query: 259 SGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQH 318
            G+A                                +GLG++ALELF  M+   I+PN  
Sbjct: 635 CGFA-------------------------------YHGLGEEALELFEHMLHENIKPNHA 663

Query: 319 TFSSCLCACASIVSLKHG-----KQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQ 373
           TF S L AC+ + + K G     K    + +           S ++D+  + G + +  +
Sbjct: 664 TFVSVLRACSHVGNAKKGLFYFQKMASIYALEPQLEH----YSCMVDILGRSGQVEEALR 719

Query: 374 VFDLTDNKENSMLWNTMISALTQHGYDEQA 403
           +      + ++++W T++S     G  E A
Sbjct: 720 LIQDMPFEADAIIWRTLLSICKIQGNVEVA 749



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 84/378 (22%), Positives = 164/378 (43%), Gaps = 63/378 (16%)

Query: 18  NCLIQSFLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLH 77
           N +I  F SL  K + S+   S  L  + G+     T A +L  CA   ++ LGK++H  
Sbjct: 530 NAIISGF-SLQKKSEDSQRFFSHML--EMGVEPDNFTYATVLDTCANLATVGLGKQIHAQ 586

Query: 78  LKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKH 137
           + +        ++++ L+ MY KCG+  D+  +F K P ++  ++N M+ G+A  G+ + 
Sbjct: 587 M-IKLELLSDVYITSTLVDMYSKCGNMHDSLLMFRKAPKRDSVTWNAMICGFAYHGLGEE 645

Query: 138 ARNLFDNMAERDV----VSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILT 193
           A  LF++M   ++     ++ +++   +  G  ++GL +++ +            A I  
Sbjct: 646 ALELFEHMLHENIKPNHATFVSVLRACSHVGNAKKGLFYFQKM------------ASIYA 693

Query: 194 ICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLF-DETDARDVL 252
           +  +LE                        S +VD   + G++ +A RL  D     D +
Sbjct: 694 LEPQLEHY----------------------SCMVDILGRSGQVEEALRLIQDMPFEADAI 731

Query: 253 TWTTMVSGYAKLGDMESASKLFNEMPEKNP---VSWTTLIAGYTRNGLGQKALELFTRMM 309
            W T++S     G++E A K  + + + +P    ++T L   Y   G+ Q+         
Sbjct: 732 IWRTLLSICKIQGNVEVAEKAASSLLKLDPEDSSAYTLLSNIYADAGMWQQ--------- 782

Query: 310 ILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMY------S 363
           + +IR    + +       S + +K   +VH FL+         ++ SL+D+       S
Sbjct: 783 VSKIRQTMRSHNLKKEPGCSWIEVK--DEVHTFLVCDKAHPKCEMIYSLLDLLICDMRRS 840

Query: 364 KCGCLNDGRQVFDLTDNK 381
            C    D  QV ++ +N+
Sbjct: 841 GCAPEIDTIQVEEVEENR 858


>gi|227462996|gb|ACP39950.1| pentatricopeptide repeat protein [Gossypium hirsutum]
 gi|227462998|gb|ACP39951.1| pentatricopeptide repeat protein [Gossypium hirsutum]
          Length = 532

 Score =  293 bits (751), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 152/454 (33%), Positives = 255/454 (56%), Gaps = 4/454 (0%)

Query: 135 MKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTI 194
           + HA  LF ++  R    WNT+I  + +       L  YK + +     N ++F+ +L  
Sbjct: 60  ISHAYKLFLSLPHRTTFIWNTIIRIFVEKNENATALSLYKNMLQTGFLPNNYTFSFVLRA 119

Query: 195 CVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTW 254
           C     + L    H QV+  G+ S   + + ++  YA    +  AR+LFD +  RDV+TW
Sbjct: 120 CTDNSPVGLAS--HAQVIKLGWESYDFVLNGLIHLYANWSSVEAARKLFDVSTCRDVITW 177

Query: 255 TTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIR 314
           T +++GY K G +E A +LF++MPE+N VSW+ +I GY   G+ ++ALELF  + +  +R
Sbjct: 178 TALINGYVKSGHVEFARELFDQMPERNEVSWSAMITGYVHMGMFREALELFNDLQLTGLR 237

Query: 315 PNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQV 374
           PN       L AC+ + SL HG+ +H ++ R     + ++ ++L+DMY+KCGC+     V
Sbjct: 238 PNHAGIVGALTACSYLGSLDHGRWIHAYVDRNGTELDRVLGTALVDMYAKCGCIEIACSV 297

Query: 375 FDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGL 434
           F+   +K+ +  + ++IS L  HG    AI+LF  M    V P+++T   +L+AC+  GL
Sbjct: 298 FEKMPDKD-AFAFTSLISGLANHGQSADAIQLFGRMQSEKVIPNEVTFICVLSACSRMGL 356

Query: 435 VQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALH 494
           V EGL  F  M+   GI P  +H+ C+++LL +AG  ++    + +MP E DSY+  AL 
Sbjct: 357 VDEGLRIFNCMSVVYGIEPGVQHYGCMVDLLGRAGLLEEAKRLVREMPMEPDSYVLGALL 416

Query: 495 GVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKK 554
             CR+HG++++G++ V+ L+++       H LLS++Y++  +   V KVR+ +  ++ KK
Sbjct: 417 NSCRVHGDVELGKETVESLVERGLDHGGVHVLLSNMYASSNQWDWVVKVRKEMGAKKVKK 476

Query: 555 EQAISWIEIENKVHAFSVSD-SLHPMRDVLYSVL 587
               S IEI+  V  F   D S   + DV+  +L
Sbjct: 477 VPGCSSIEIDGSVSEFIAGDMSYLRVEDVMLVLL 510



 Score =  135 bits (340), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 92/314 (29%), Positives = 154/314 (49%), Gaps = 12/314 (3%)

Query: 11  NRKNLPNNCLIQSFLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKL 70
           +R     N +I+ F   + K + + A+S    + Q G      T +F+L+ C ++  + L
Sbjct: 72  HRTTFIWNTIIRIF---VEKNENATALSLYKNMLQTGFLPNNYTFSFVLRACTDNSPVGL 128

Query: 71  GKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYA 130
                + +KL        F+ N LI +Y    S   ARK+FD    +++ ++  +++GY 
Sbjct: 129 ASHAQV-IKLGWESYD--FVLNGLIHLYANWSSVEAARKLFDVSTCRDVITWTALINGYV 185

Query: 131 NLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAG 190
             G ++ AR LFD M ER+ VSW+ MI GY   G   E L+ +  L+   +  N     G
Sbjct: 186 KSGHVEFARELFDQMPERNEVSWSAMITGYVHMGMFREALELFNDLQLTGLRPNHAGIVG 245

Query: 191 ILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARD 250
            LT C  L  L   R +H  V   G   + V+ +++VD YAKCG +  A  +F++   +D
Sbjct: 246 ALTACSYLGSLDHGRWIHAYVDRNGTELDRVLGTALVDMYAKCGCIEIACSVFEKMPDKD 305

Query: 251 VLTWTTMVSGYAKLGDMESASKLFNEMPEK----NPVSWTTLIAGYTRNGLGQKALELFT 306
              +T+++SG A  G    A +LF  M  +    N V++  +++  +R GL  + L +F 
Sbjct: 306 AFAFTSLISGLANHGQSADAIQLFGRMQSEKVIPNEVTFICVLSACSRMGLVDEGLRIFN 365

Query: 307 RM-MILRIRPN-QH 318
            M ++  I P  QH
Sbjct: 366 CMSVVYGIEPGVQH 379



 Score = 83.2 bits (204), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 60/267 (22%), Positives = 113/267 (42%), Gaps = 34/267 (12%)

Query: 265 GDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCL 324
            D+  A KLF  +P +    W T+I  +        AL L+  M+     PN +TFS  L
Sbjct: 58  ADISHAYKLFLSLPHRTTFIWNTIIRIFVEKNENATALSLYKNMLQTGFLPNNYTFSFVL 117

Query: 325 CACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKE-- 382
            AC     +  G   H  +I+  + S   V++ LI +Y+    +   R++FD++  ++  
Sbjct: 118 RACTDNSPV--GLASHAQVIKLGWESYDFVLNGLIHLYANWSSVEAARKLFDVSTCRDVI 175

Query: 383 ----------------------------NSMLWNTMISALTQHGYDEQAIRLFHDMVRSS 414
                                       N + W+ MI+     G   +A+ LF+D+  + 
Sbjct: 176 TWTALINGYVKSGHVEFARELFDQMPERNEVSWSAMITGYVHMGMFREALELFNDLQLTG 235

Query: 415 VKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQL 474
           ++P+   +   L AC++ G +  G  +  +     G   ++     L+++ A+ GC +  
Sbjct: 236 LRPNHAGIVGALTACSYLGSLDHG-RWIHAYVDRNGTELDRVLGTALVDMYAKCGCIEIA 294

Query: 475 MNQLEKMPYEHDSYLWNALHGVCRIHG 501
            +  EKMP + D++ + +L      HG
Sbjct: 295 CSVFEKMP-DKDAFAFTSLISGLANHG 320


>gi|147845321|emb|CAN83351.1| hypothetical protein VITISV_028907 [Vitis vinifera]
          Length = 948

 Score =  293 bits (750), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 182/652 (27%), Positives = 321/652 (49%), Gaps = 109/652 (16%)

Query: 21  IQSFLSLIS----KGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVH- 75
           + S+ SLIS     G  +EA+         G+   + T++ +L+ C    S++ G  +H 
Sbjct: 240 VVSWNSLISGYNANGYWNEALEIYYRFRNLGVVPDSYTMSSVLRACGGLGSVEEGDIIHG 299

Query: 76  LHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMM 135
           L  K+  +K     ++N L+SMY K    +D R++FDK+ +++  S+N M+ GY+ +G+ 
Sbjct: 300 LIEKIGIKKD--VIVNNGLLSMYCKFNGLIDGRRIFDKMVLRDAVSWNTMICGYSQVGLY 357

Query: 136 KHARNLFDNMA--------------------------------------ERDVVSWNTMI 157
           + +  LF  M                                       E D  + N +I
Sbjct: 358 EESIKLFMEMVNQFKPDLLTITSILQACGHLGDLEFGKYVHDYMITSGYECDTTASNILI 417

Query: 158 IGYAK-------------------------------SGAVEEGLKFYKVLRRFSISCNEF 186
             YAK                               +G+ +E +K +K+++   +  +  
Sbjct: 418 NMYAKCGNLLASQEVFSGMKCKDSVSWNSMINVYIQNGSFDEAMKLFKMMKT-DVKPDSV 476

Query: 187 SFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDET 246
           ++  +L++  +L +L L +++H  +   GF SN+V+S+++VD YAKCGE+ D+ ++F+  
Sbjct: 477 TYVMLLSMSTQLGDLXLGKELHCDLAKMGFNSNIVVSNTLVDMYAKCGEMGDSLKVFENM 536

Query: 247 DARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFT 306
            ARD++TW T+++      D                              LG   L + +
Sbjct: 537 KARDIITWNTIIASCVHSEDCN----------------------------LG---LRMIS 565

Query: 307 RMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCG 366
           RM    + P+  T  S L  C+ + + + GK++HG + +    S+  V + LI+MYSKCG
Sbjct: 566 RMRTEGVTPDMATMLSILPVCSLLAAKRQGKEIHGCIFKLGLESDVPVGNVLIEMYSKCG 625

Query: 367 CLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVIL 426
            L +  QVF L   K+  + W  +ISA   +G  ++A+R F +M  + + PD +    I+
Sbjct: 626 SLRNSFQVFKLMKTKD-VVTWTALISACGMYGEGKKAVRAFGEMEAAGIVPDHVAFVAII 684

Query: 427 NACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHD 486
            AC+HSGLV+EGL YF  M  D  I P  EH+AC+++LL+++   D+  + +  MP + D
Sbjct: 685 FACSHSGLVEEGLNYFHRMKKDYKIEPRIEHYACVVDLLSRSALLDKAEDFILSMPLKPD 744

Query: 487 SYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQL 546
           S +W AL   CR+ G+ ++ ++V +++I+ NP  +  + L+S++Y+ALGK   V  +R+ 
Sbjct: 745 SSIWGALLSACRMSGDTEIAQRVSERIIELNPDDTGYYVLVSNVYAALGKWDQVRSIRKS 804

Query: 547 INERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQMGEDA 598
           I  R  KK+   SW+EI+NKV+ F          + +  +L  LAG M ++ 
Sbjct: 805 IKARGLKKDPGCSWMEIQNKVYVFGTGTKFSEQFEEVNKLLGMLAGLMAKEG 856



 Score =  176 bits (445), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 119/432 (27%), Positives = 205/432 (47%), Gaps = 43/432 (9%)

Query: 149 DVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVH 208
           +V  WN++I     +G   E L  Y   +R  +  + ++F  ++  C  L + ++ + +H
Sbjct: 138 NVYXWNSIIRALTHNGLFSEALSLYSETQRIRLQPDTYTFPSVINACAGLLDFEMAKSIH 197

Query: 209 GQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDME 268
            +VL  GF S++ I ++++D Y +                                 D++
Sbjct: 198 DRVLXMGFGSDLYIGNALIDMYCR-------------------------------FNDLD 226

Query: 269 SASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACA 328
            A K+F EMP ++ VSW +LI+GY  NG   +ALE++ R   L + P+ +T SS L AC 
Sbjct: 227 KARKVFEEMPLRDVVSWNSLISGYNANGYWNEALEIYYRFRNLGVVPDSYTMSSVLRACG 286

Query: 329 SIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWN 388
            + S++ G  +HG + +   + + IV + L+ MY K   L DGR++FD    ++ ++ WN
Sbjct: 287 GLGSVEEGDIIHGLIEKIGIKKDVIVNNGLLSMYCKFNGLIDGRRIFDKMVLRD-AVSWN 345

Query: 389 TMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHD 448
           TMI   +Q G  E++I+LF +MV +  KPD +T+  IL AC H G ++     F    HD
Sbjct: 346 TMICGYSQVGLYEESIKLFMEMV-NQFKPDLLTITSILQACGHLGDLE-----FGKYVHD 399

Query: 449 LGIIPNQEHHACLIELLAQ--AGCSDQLMNQ--LEKMPYEHDSYLWNALHGVCRIHGNID 504
             I    E       +L    A C + L +Q     M  + DS  WN++  V   +G+ D
Sbjct: 400 YMITSGYECDTTASNILINMYAKCGNLLASQEVFSGMKCK-DSVSWNSMINVYIQNGSFD 458

Query: 505 MGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIE 564
              K+   +       S T+ +L S+ + LG   L +++   + +  F     +S   ++
Sbjct: 459 EAMKLFKMMKTDVKPDSVTYVMLLSMSTQLGDLXLGKELHCDLAKMGFNSNIVVSNTLVD 518

Query: 565 NKVHAFSVSDSL 576
                  + DSL
Sbjct: 519 MYAKCGEMGDSL 530



 Score =  174 bits (442), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 130/490 (26%), Positives = 227/490 (46%), Gaps = 72/490 (14%)

Query: 26  SLISKGQLSEAISSLDLLAQRGIRLPAETLAF--ILQQCAESKSLKLGKRVHLHLKLTQR 83
           +L   G  SEA+S L    QR IRL  +T  F  ++  CA     ++ K +H        
Sbjct: 148 ALTHNGLFSEALS-LYSETQR-IRLQPDTYTFPSVINACAGLLDFEMAKSIH-------- 197

Query: 84  KTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFD 143
                   + ++ M F  GSD              L+  N ++  Y     +  AR +F+
Sbjct: 198 --------DRVLXMGF--GSD--------------LYIGNALIDMYCRFNDLDKARKVFE 233

Query: 144 NMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKL 203
            M  RDVVSWN++I GY  +G   E L+ Y   R   +  + ++ + +L  C  L  ++ 
Sbjct: 234 EMPLRDVVSWNSLISGYNANGYWNEALEIYYRFRNLGVVPDSYTMSSVLRACGGLGSVEE 293

Query: 204 TRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAK 263
              +HG +   G   +V++++ ++  Y K   L D RR+FD+   RD ++W TM+ GY++
Sbjct: 294 GDIIHGLIEKIGIKKDVIVNNGLLSMYCKFNGLIDGRRIFDKMVLRDAVSWNTMICGYSQ 353

Query: 264 LGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSC 323
           +G  E + KLF E                                M+ + +P+  T +S 
Sbjct: 354 VGLYEESIKLFME--------------------------------MVNQFKPDLLTITSI 381

Query: 324 LCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKEN 383
           L AC  +  L+ GK VH ++I + +  +T   + LI+MY+KCG L   ++VF     K+ 
Sbjct: 382 LQACGHLGDLEFGKYVHDYMITSGYECDTTASNILINMYAKCGNLLASQEVFSGMKCKD- 440

Query: 384 SMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFE 443
           S+ WN+MI+   Q+G  ++A++LF  M+++ VKPD +T  ++L+  T  G +  G     
Sbjct: 441 SVSWNSMINVYIQNGSFDEAMKLFK-MMKTDVKPDSVTYVMLLSMSTQLGDLXLGKELHC 499

Query: 444 SMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNI 503
            +   +G   N      L+++ A+ G     +   E M    D   WN +   C    + 
Sbjct: 500 DLAK-MGFNSNIVVSNTLVDMYAKCGEMGDSLKVFENMK-ARDIITWNTIIASCVHSEDC 557

Query: 504 DMGRKVVDQL 513
           ++G +++ ++
Sbjct: 558 NLGLRMISRM 567



 Score =  108 bits (270), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 80/303 (26%), Positives = 145/303 (47%), Gaps = 45/303 (14%)

Query: 257 MVSGYAKLGDMESASKLFN-EMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRP 315
           +++ YA   D  S+  +F    P  N   W ++I   T NGL  +AL L++    +R++P
Sbjct: 113 LIAKYAHFRDPTSSFSVFRLASPSNNVYXWNSIIRALTHNGLFSEALSLYSETQRIRLQP 172

Query: 316 NQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVF 375
           + +TF S + ACA ++  +  K +H  ++   F S+  + ++LIDMY +   L+  R+VF
Sbjct: 173 DTYTFPSVINACAGLLDFEMAKSIHDRVLXMGFGSDLYIGNALIDMYCRFNDLDKARKVF 232

Query: 376 DLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLV 435
           +    ++  + WN++IS    +GY  +A+ +++      V PD  T++ +L AC   G V
Sbjct: 233 EEMPLRD-VVSWNSLISGYNANGYWNEALEIYYRFRNLGVVPDSYTMSSVLRACGGLGSV 291

Query: 436 QEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHG 495
           +EG                                 D +   +EK+  + D  + N L  
Sbjct: 292 EEG---------------------------------DIIHGLIEKIGIKKDVIVNNGLLS 318

Query: 496 V-CRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINE--RQF 552
           + C+ +G ID GR++ D+++ ++  S  T   +   YS +G   L E+  +L  E   QF
Sbjct: 319 MYCKFNGLID-GRRIFDKMVLRDAVSWNT---MICGYSQVG---LYEESIKLFMEMVNQF 371

Query: 553 KKE 555
           K +
Sbjct: 372 KPD 374



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 55/201 (27%), Positives = 85/201 (42%), Gaps = 18/201 (8%)

Query: 303 ELFTRMM----ILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSL 358
           +LF+R+M    +L     Q  FSS   A AS  +     ++H  +I      + I  + L
Sbjct: 54  KLFSRVMKTLRVLHECSRQTLFSSISRALASAATTTQLHKLHSLIITLGLHHSVIFSAKL 113

Query: 359 IDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPD 418
           I  Y+          VF L     N   WN++I ALT +G   +A+ L+ +  R  ++PD
Sbjct: 114 IAKYAHFRDPTSSFSVFRLASPSNNVYXWNSIIRALTHNGLFSEALSLYSETQRIRLQPD 173

Query: 419 KITLAVILNACTHSGLVQEGLTYFE--SMTHD----LGIIPNQEHHACLIELLAQAGCSD 472
             T   ++NAC        GL  FE     HD    +G   +      LI++  +    D
Sbjct: 174 TYTFPSVINACA-------GLLDFEMAKSIHDRVLXMGFGSDLYIGNALIDMYCRFNDLD 226

Query: 473 QLMNQLEKMPYEHDSYLWNAL 493
           +     E+MP   D   WN+L
Sbjct: 227 KARKVFEEMPLR-DVVSWNSL 246


>gi|302791503|ref|XP_002977518.1| hypothetical protein SELMODRAFT_107192 [Selaginella moellendorffii]
 gi|300154888|gb|EFJ21522.1| hypothetical protein SELMODRAFT_107192 [Selaginella moellendorffii]
          Length = 652

 Score =  293 bits (750), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 152/509 (29%), Positives = 285/509 (55%), Gaps = 16/509 (3%)

Query: 94  LISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSW 153
           L+S +   G   +A+ +FD +  ++L ++  ML+  A    ++ A+  FD M ERD+V+W
Sbjct: 60  LLSAFALSGHHEEAKTLFDTMQERDLIAWTIMLTVLATFSNIEDAKYHFDQMPERDLVAW 119

Query: 154 NTMIIGYAKSGAVEEGLK-FYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVL 212
             M+   A+ G +E   + F ++  R     N FS+  +L+   +  ++K      G+V 
Sbjct: 120 TAMLAANAERGQMENARETFDQMPER-----NLFSWTSLLSAYGRSGDVKAA----GRVF 170

Query: 213 VTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASK 272
            +    N+V  ++++  Y+  G++  A+R FD    RD++ WT M+S YA  G +    +
Sbjct: 171 DSMPEWNLVAWTAMLTGYSLSGDVVRAKRAFDSMPERDLIAWTAMLSAYAFNGHLRYTRE 230

Query: 273 LFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRM-----MILRIRPNQHTFSSCLCAC 327
           +F  MPE++ +SW T++A    N L +++ ELF RM     +   + PN+ TF + L AC
Sbjct: 231 IFQRMPERDLISWATMVAALVENDLLEESKELFDRMPRHCALSKGMTPNRVTFITLLDAC 290

Query: 328 ASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLW 387
           + + +L  G+++H  +    F ++ +V ++L++ Y +CG L D + VFD    + + + W
Sbjct: 291 SFLGALAEGRKIHAAVAERGFDTDLVVSNALVNFYGRCGALGDAKIVFDGM-RRRDVISW 349

Query: 388 NTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTH 447
           ++MISA  Q G  ++A+ L+H M+     PD I    +L AC++SG+V+    +F S+  
Sbjct: 350 SSMISAFAQRGRVDEAMELYHRMLSEGTLPDDIIFISVLFACSNSGVVEASGDFFRSIVG 409

Query: 448 DLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGR 507
           D  + P  EH+AC++++L +AG      + L  MP+     L+  +   C+++ +++ G 
Sbjct: 410 DTQVEPTLEHYACMVDVLGRAGKLRDAEDLLRLMPFHPGPLLYMTMLSACKLYTDVERGE 469

Query: 508 KVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKV 567
              + + + +P++S+ +  L++IYSA  + +   ++R+L+ ER  KK+   SWIE+ ++V
Sbjct: 470 AAAEVVFELDPENSSPYITLANIYSAAKRPKDAARIRKLMEERGIKKKPGCSWIEVLDRV 529

Query: 568 HAFSVSDSLHPMRDVLYSVLEQLAGQMGE 596
           H F   D +HP RD +Y+ +++L  QM E
Sbjct: 530 HEFIAGDKMHPQRDEIYAEIQRLGRQMKE 558



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 83/344 (24%), Positives = 150/344 (43%), Gaps = 80/344 (23%)

Query: 129 YANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSF 188
           +  LG ++ AR +FD +A+RD  SW  M+  YA+SG +      +  + R+S+     S+
Sbjct: 2   FGRLGCVERARQIFDAIADRDSFSWGIMLSIYARSGDLSNAKGVFDRMPRWSLG----SW 57

Query: 189 AGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDA 248
             +L+                                   A+A  G   +A+ LFD    
Sbjct: 58  TALLS-----------------------------------AFALSGHHEEAKTLFDTMQE 82

Query: 249 RDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRM 308
           RD++ WT M++  A   ++E A   F++MPE++ V+WT ++A     G  + A E F +M
Sbjct: 83  RDLIAWTIMLTVLATFSNIEDAKYHFDQMPERDLVAWTAMLAANAERGQMENARETFDQM 142

Query: 309 MILRIRPNQHTFS--SCLCA---------------------CASIVSLKHGKQVHGFLIR 345
                 P ++ FS  S L A                       +  ++  G  + G ++R
Sbjct: 143 ------PERNLFSWTSLLSAYGRSGDVKAAGRVFDSMPEWNLVAWTAMLTGYSLSGDVVR 196

Query: 346 TN--FRS----NTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGY 399
               F S    + I  ++++  Y+  G L   R++F     + + + W TM++AL ++  
Sbjct: 197 AKRAFDSMPERDLIAWTAMLSAYAFNGHLRYTREIFQRMPER-DLISWATMVAALVENDL 255

Query: 400 DEQAIRLFHDMVR-----SSVKPDKITLAVILNACTHSGLVQEG 438
            E++  LF  M R       + P+++T   +L+AC+  G + EG
Sbjct: 256 LEESKELFDRMPRHCALSKGMTPNRVTFITLLDACSFLGALAEG 299



 Score = 69.3 bits (168), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 75/341 (21%), Positives = 144/341 (42%), Gaps = 35/341 (10%)

Query: 230 YAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLI 289
           + + G +  AR++FD    RD  +W  M+S YA+ GD+ +A  +F+ MP  +  SWT L+
Sbjct: 2   FGRLGCVERARQIFDAIADRDSFSWGIMLSIYARSGDLSNAKGVFDRMPRWSLGSWTALL 61

Query: 290 AGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFR 349
           + +  +G  ++A  LF  M       +   ++  L   A+  +++  K    +       
Sbjct: 62  SAFALSGHHEEAKTLFDTMQ----ERDLIAWTIMLTVLATFSNIEDAK----YHFDQMPE 113

Query: 350 SNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHD 409
            + +  ++++   ++ G + + R+ FD    + N   W +++SA  + G  + A R+F  
Sbjct: 114 RDLVAWTAMLAANAERGQMENARETFDQMPER-NLFSWTSLLSAYGRSGDVKAAGRVFDS 172

Query: 410 MVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQA- 468
           M   ++    +    +L   + SG V      F+SM       P ++  A    L A A 
Sbjct: 173 MPEWNL----VAWTAMLTGYSLSGDVVRAKRAFDSM-------PERDLIAWTAMLSAYAF 221

Query: 469 -GCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQ-------NPQS 520
            G         ++MP E D   W  +      +  ++  +++ D++           P  
Sbjct: 222 NGHLRYTREIFQRMP-ERDLISWATMVAALVENDLLEESKELFDRMPRHCALSKGMTPNR 280

Query: 521 SATHGLLS--SIYSALGKGRLVEKVRQLINERQFKKEQAIS 559
                LL   S   AL +GR   K+   + ER F  +  +S
Sbjct: 281 VTFITLLDACSFLGALAEGR---KIHAAVAERGFDTDLVVS 318



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 33/126 (26%), Positives = 66/126 (52%), Gaps = 7/126 (5%)

Query: 54  TLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFL-SNHLISMYFKCGSDVDARKVFD 112
           T   +L  C+   +L  G+++H    + +R   T  + SN L++ Y +CG+  DA+ VFD
Sbjct: 282 TFITLLDACSFLGALAEGRKIHA--AVAERGFDTDLVVSNALVNFYGRCGALGDAKIVFD 339

Query: 113 KIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAER----DVVSWNTMIIGYAKSGAVEE 168
            +  +++ S+++M+S +A  G +  A  L+  M       D + + +++   + SG VE 
Sbjct: 340 GMRRRDVISWSSMISAFAQRGRVDEAMELYHRMLSEGTLPDDIIFISVLFACSNSGVVEA 399

Query: 169 GLKFYK 174
              F++
Sbjct: 400 SGDFFR 405


>gi|359491264|ref|XP_002280276.2| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 684

 Score =  293 bits (750), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 163/480 (33%), Positives = 279/480 (58%), Gaps = 20/480 (4%)

Query: 137 HARNLFDNMAERD--VVSWNTMIIGYAKSGAVEEGLKFYKVLRRFS------ISCNEFSF 188
           +AR LFD+       +  WN MI  Y+K    +E +  +  LR  +      +  +E++F
Sbjct: 124 NARILFDHYPSPSPPIKLWNVMIRTYSKIRNSQEPIHLF--LRMLTLDGPMQVVPDEYTF 181

Query: 189 AGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDA 248
             ++T C     L     VHG V+ +GF SN+ + +S+++  +    + DAR++F++   
Sbjct: 182 TFVITSCSHQISLIYGEIVHGMVVKSGFESNLYVGNSVINMCSVFARMEDARKVFNQMSE 241

Query: 249 RDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRM 308
           RDV +WT+++ GYAK G+M+ A +LFN MP +N VSW  +I+G+   G   +AL  F  M
Sbjct: 242 RDVFSWTSLLGGYAKHGEMDRACELFNMMPVRNDVSWAVMISGFLGCGRYPEALTFFCNM 301

Query: 309 MIL-RIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGC 367
           +   R+ PN+      L ACA + +L  G  +H ++ +   R ++ + ++LIDMY+KCG 
Sbjct: 302 LCDDRVNPNEAVLVCVLSACAHLGALDQGNWIHLYIDKIGIRQSSNISTALIDMYAKCGR 361

Query: 368 LNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILN 427
           ++   +VF+    K + + + +MIS L+ HG  + A+R+F+ M+  +V P++IT+  +LN
Sbjct: 362 IDCASRVFN-GICKRDVLSFTSMISGLSYHGLGKDALRVFYQMLDENVMPNEITILGVLN 420

Query: 428 ACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDS 487
            C+HSGLV+EG +   +M    GI P  EH+ C I+LL +AG  ++ +  ++ MP E D 
Sbjct: 421 GCSHSGLVEEGSSILANMESLWGIAPKIEHYGCYIDLLGRAGYLERALEVVKTMPMEPDI 480

Query: 488 YLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHG--LLSSIYSALGKGRLVEKVRQ 545
            +W AL    RIH N+++G +++   I Q   S    G  LLS++Y++LG+   V ++R+
Sbjct: 481 VIWRALLSASRIHHNVNLGEQIISH-IGQLKSSDHNGGEVLLSNLYASLGRWERVTEMRK 539

Query: 546 LINERQFKKEQAISWIEIENKVHAFSVSDSLHP----MRDVLYSVLEQLAGQMGEDAPSL 601
           L+ +R+ +     SWIE+   VH F V+D LHP    +R+ L  +L++L+ Q+G  A ++
Sbjct: 540 LMVDRRSESSPGCSWIEVNGLVHEFRVADQLHPQIVEIRNKLNEILKRLS-QIGYSANTM 598



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 96/356 (26%), Positives = 159/356 (44%), Gaps = 45/356 (12%)

Query: 50  LPAE-TLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDAR 108
           +P E T  F++  C+   SL  G+ VH  + +        ++ N +I+M        DAR
Sbjct: 175 VPDEYTFTFVITSCSHQISLIYGEIVH-GMVVKSGFESNLYVGNSVINMCSVFARMEDAR 233

Query: 109 KVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEE 168
           KVF+++  +++FS+ ++L GYA  G M  A  LF+ M  R+ VSW  MI G+   G   E
Sbjct: 234 KVFNQMSERDVFSWTSLLGGYAKHGEMDRACELFNMMPVRNDVSWAVMISGFLGCGRYPE 293

Query: 169 GLKFY-KVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIV 227
            L F+  +L    ++ NE     +L+ C  L  L     +H  +   G   +  IS++++
Sbjct: 294 ALTFFCNMLCDDRVNPNEAVLVCVLSACAHLGALDQGNWIHLYIDKIGIRQSSNISTALI 353

Query: 228 DAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTT 287
           D YAKCG +  A R+F+    RDVL++T+M+SG                           
Sbjct: 354 DMYAKCGRIDCASRVFNGICKRDVLSFTSMISG--------------------------- 386

Query: 288 LIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTN 347
                + +GLG+ AL +F +M+   + PN+ T    L  C+       G    G  I  N
Sbjct: 387 ----LSYHGLGKDALRVFYQMLDENVMPNEITILGVLNGCS-----HSGLVEEGSSILAN 437

Query: 348 FRSNTIVMSSL------IDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQH 397
             S   +   +      ID+  + G L    +V      + + ++W  ++SA   H
Sbjct: 438 MESLWGIAPKIEHYGCYIDLLGRAGYLERALEVVKTMPMEPDIVIWRALLSASRIH 493



 Score =  108 bits (271), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 97/385 (25%), Positives = 179/385 (46%), Gaps = 52/385 (13%)

Query: 184 NEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLF 243
           N  +F+ +L    KL  L+   Q+H QV+     SN  +++S++  Y       +AR LF
Sbjct: 73  NPQTFSLLLNQRPKLSPLQ---QIHAQVVTQALSSNASLTASLIHCYLCAKNHPNARILF 129

Query: 244 DE--TDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKA 301
           D   + +  +  W  M+  Y+K+                             RN   Q+ 
Sbjct: 130 DHYPSPSPPIKLWNVMIRTYSKI-----------------------------RN--SQEP 158

Query: 302 LELFTRMMIL----RIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSS 357
           + LF RM+ L    ++ P+++TF+  + +C+  +SL +G+ VHG ++++ F SN  V +S
Sbjct: 159 IHLFLRMLTLDGPMQVVPDEYTFTFVITSCSHQISLIYGEIVHGMVVKSGFESNLYVGNS 218

Query: 358 LIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKP 417
           +I+M S    + D R+VF+    ++    W +++    +HG  ++A  LF+ M    V+ 
Sbjct: 219 VINMCSVFARMEDARKVFNQMSERD-VFSWTSLLGGYAKHGEMDRACELFNMM---PVRN 274

Query: 418 DKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQ---L 474
           D ++ AV+++     G   E LT+F +M  D  + PN+    C++   A  G  DQ   +
Sbjct: 275 D-VSWAVMISGFLGCGRYPEALTFFCNMLCDDRVNPNEAVLVCVLSACAHLGALDQGNWI 333

Query: 475 MNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSI-YSA 533
              ++K+     S +  AL  +    G ID   +V + +  ++  S  +  ++S + Y  
Sbjct: 334 HLYIDKIGIRQSSNISTALIDMYAKCGRIDCASRVFNGICKRDVLSFTS--MISGLSYHG 391

Query: 534 LGKGRLVEKVRQLINERQFKKEQAI 558
           LGK  L     Q+++E     E  I
Sbjct: 392 LGKDAL-RVFYQMLDENVMPNEITI 415


>gi|225445386|ref|XP_002281711.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic [Vitis vinifera]
          Length = 711

 Score =  293 bits (750), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 154/468 (32%), Positives = 249/468 (53%), Gaps = 32/468 (6%)

Query: 123 NNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSIS 182
           N +++ Y+N G +  AR +FD M  + VVSW TMI  YA+     E +K ++ +   S+ 
Sbjct: 176 NTLMNMYSNCGCLVSARKVFDKMVNKSVVSWATMIGAYAQWDLPHEAIKLFRRMEIASVK 235

Query: 183 CNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRL 242
            NE +   +LT C +  +L+  +QVH  +  TG   + V++S+++D Y KCG    AR  
Sbjct: 236 PNEITLVNVLTACARSRDLETAKQVHKYIDETGIGFHTVLTSALMDVYCKCGCYPLAR-- 293

Query: 243 FDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKAL 302
                                         LFN+MPEKN   W  +I G+  +   ++AL
Sbjct: 294 -----------------------------DLFNKMPEKNLFCWNIMINGHVEDSDYEEAL 324

Query: 303 ELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMY 362
            LF  M +  ++ ++ T +S L AC  + +L+ GK +H ++ +     +  + ++L+DMY
Sbjct: 325 SLFNEMQLSGVKGDKVTMASLLIACTHLGALELGKWLHVYIEKEKIEVDVALGTALVDMY 384

Query: 363 SKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITL 422
           +KCG +    +VF     K+  M W  +I  L   G   +A+ LFH+M  S VKPD IT 
Sbjct: 385 AKCGSIESAMRVFQEMPEKD-VMTWTALIVGLAMCGQGLKALELFHEMQMSEVKPDAITF 443

Query: 423 AVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMP 482
             +L AC+H+GLV EG+ YF SM +  GI P+ EH+ C++++L +AG   +  + ++ MP
Sbjct: 444 VGVLAACSHAGLVNEGIAYFNSMPNKYGIQPSIEHYGCMVDMLGRAGRIAEAEDLIQNMP 503

Query: 483 YEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEK 542
              D ++   L   CRIHGN+ +  +   QLI+ +P++  T+ LLS+IYS++      +K
Sbjct: 504 MAPDYFVLVGLLSACRIHGNLVVAERAAQQLIELDPKNGGTYVLLSNIYSSMKNWEAAKK 563

Query: 543 VRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQL 590
           +R+L+ ER  KK    S IE+   VH F   D  HP    +Y  L+ +
Sbjct: 564 MRELMVERNIKKPPGCSAIEVGGVVHEFVKGDVSHPQSSEIYETLDDM 611



 Score =  112 bits (279), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 97/383 (25%), Positives = 154/383 (40%), Gaps = 98/383 (25%)

Query: 54  TLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDK 113
           TL  +L  CA S+ L+  K+VH ++  T      T L++ L+ +Y KCG    AR +F+K
Sbjct: 240 TLVNVLTACARSRDLETAKQVHKYIDETGIGF-HTVLTSALMDVYCKCGCYPLARDLFNK 298

Query: 114 IPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFY 173
           +P KNLF +N M++                               G+ +    EE L  +
Sbjct: 299 MPEKNLFCWNIMIN-------------------------------GHVEDSDYEEALSLF 327

Query: 174 KVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKC 233
             ++   +  ++ + A +L  C  L  L+L + +H  +       +V + +++VD YAKC
Sbjct: 328 NEMQLSGVKGDKVTMASLLIACTHLGALELGKWLHVYIEKEKIEVDVALGTALVDMYAKC 387

Query: 234 GELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYT 293
           G +  A R+F E   +DV+TWT ++ G A  G                            
Sbjct: 388 GSIESAMRVFQEMPEKDVMTWTALIVGLAMCGQ--------------------------- 420

Query: 294 RNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTI 353
               G KALELF  M +  ++P+  TF   L AC+      H   V+  +   N   N  
Sbjct: 421 ----GLKALELFHEMQMSEVKPDAITFVGVLAACS------HAGLVNEGIAYFNSMPNKY 470

Query: 354 VMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRS 413
            +   I+ Y   GC                      M+  L + G   +A  L  +M   
Sbjct: 471 GIQPSIEHY---GC----------------------MVDMLGRAGRIAEAEDLIQNM--- 502

Query: 414 SVKPDKITLAVILNAC-THSGLV 435
            + PD   L  +L+AC  H  LV
Sbjct: 503 PMAPDYFVLVGLLSACRIHGNLV 525



 Score = 66.2 bits (160), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 59/266 (22%), Positives = 122/266 (45%), Gaps = 20/266 (7%)

Query: 28  ISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPT 87
           +      EA+S  + +   G++    T+A +L  C    +L+LGK +H++++  ++    
Sbjct: 315 VEDSDYEEALSLFNEMQLSGVKGDKVTMASLLIACTHLGALELGKWLHVYIE-KEKIEVD 373

Query: 88  TFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNM-- 145
             L   L+ MY KCGS   A +VF ++P K++ ++  ++ G A  G    A  LF  M  
Sbjct: 374 VALGTALVDMYAKCGSIESAMRVFQEMPEKDVMTWTALIVGLAMCGQGLKALELFHEMQM 433

Query: 146 --AERDVVSWNTMIIGYAKSGAVEEGLKFYKVL-RRFSISCNEFSFAGILTI------CV 196
              + D +++  ++   + +G V EG+ ++  +  ++ I  +   +  ++ +        
Sbjct: 434 SEVKPDAITFVGVLAACSHAGLVNEGIAYFNSMPNKYGIQPSIEHYGCMVDMLGRAGRIA 493

Query: 197 KLEELKLTRQVHGQVLV-TGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWT 255
           + E+L     +     V  G LS   I  ++V A         A +   E D ++  T+ 
Sbjct: 494 EAEDLIQNMPMAPDYFVLVGLLSACRIHGNLVVA-------ERAAQQLIELDPKNGGTYV 546

Query: 256 TMVSGYAKLGDMESASKLFNEMPEKN 281
            + + Y+ + + E+A K+   M E+N
Sbjct: 547 LLSNIYSSMKNWEAAKKMRELMVERN 572



 Score = 43.9 bits (102), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 44/210 (20%), Positives = 79/210 (37%), Gaps = 39/210 (18%)

Query: 316 NQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYS--KCGCLNDGRQ 373
           +Q     CL +     ++   KQ+H  ++RT    +    S ++   +    G L   R 
Sbjct: 36  SQIQLHPCLLSLEKCTTMSQLKQIHAQMLRTCLFVDPFSASKIVAFCALHDSGSLPYARL 95

Query: 374 VFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSG 433
           VF+   N   +   N++I   T      QAI  +  M+   + PD+ T   +  +C   G
Sbjct: 96  VFNQIPNP-TTFTCNSIIRGYTNKNLPRQAILFYQLMMLQGLDPDRFTFPSLFKSC---G 151

Query: 434 LVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNAL 493
           ++ EG                                  QL     K+ +  D+Y+ N L
Sbjct: 152 VLCEG---------------------------------KQLHCHSTKLGFASDAYIQNTL 178

Query: 494 HGVCRIHGNIDMGRKVVDQLIDQNPQSSAT 523
             +    G +   RKV D++++++  S AT
Sbjct: 179 MNMYSNCGCLVSARKVFDKMVNKSVVSWAT 208


>gi|449448586|ref|XP_004142047.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Cucumis sativus]
          Length = 1037

 Score =  293 bits (750), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 173/576 (30%), Positives = 298/576 (51%), Gaps = 73/576 (12%)

Query: 27  LISKGQLSEAISSLDLLAQRGIR--LPAE-TLAFILQQCAESKSLKLGKRVHLHLKLTQR 83
           L++ GQL     S ++  Q  +   +P + T   IL+ C    +L LG+++H H+  T  
Sbjct: 435 LVAYGQLDNLSDSFEIFRQMQMEGMIPNQFTYPSILRTCTSLGALYLGEQIHTHVIKTGF 494

Query: 84  KTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFD 143
           +    ++ + LI MY K G    A ++  ++P                            
Sbjct: 495 QL-NVYVCSVLIDMYAKYGQLALALRILRRLP---------------------------- 525

Query: 144 NMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKL 203
              E DVVSW  MI GY +     E L+ ++ +    I  +   FA  ++ C  +  L+ 
Sbjct: 526 ---EDDVVSWTAMIAGYVQHDMFSEALQLFEEMEYRGIQFDNIGFASAISACAGIRALRQ 582

Query: 204 TRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAK 263
            +Q+H Q    GF +++ I+++++  YA+CG                             
Sbjct: 583 GQQIHAQSYAAGFGADLSINNALISLYARCGR---------------------------- 614

Query: 264 LGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSC 323
              ++ A   F ++ +KN +SW +L++G  ++G  ++AL++F RM+      N  T+ S 
Sbjct: 615 ---IQEAYLAFEKIGDKNNISWNSLVSGLAQSGYFEEALQVFVRMLRTEAEVNMFTYGSA 671

Query: 324 LCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDG-RQVFDLTDNKE 382
           + A AS+ ++K G+Q+H  +++T + S   V +SLI +Y+K G ++D  R+  D+++   
Sbjct: 672 ISAAASLANIKQGQQIHSMVLKTGYDSEREVSNSLISLYAKSGSISDAWREFNDMSE--R 729

Query: 383 NSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYF 442
           N + WN MI+  +QHG   +A+RLF +M    + P+ +T   +L+AC+H GLV+EGL YF
Sbjct: 730 NVISWNAMITGYSQHGCGMEALRLFEEMKVCGIMPNHVTFVGVLSACSHIGLVKEGLDYF 789

Query: 443 ESM--THDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIH 500
           ESM   HDL  +P  EH+ C+++LL +AG  D+ M  +++MP   D+ +W  L   C IH
Sbjct: 790 ESMFKIHDL--VPKSEHYVCVVDLLGRAGQLDRAMEYIKEMPIPADAMIWRTLLSACVIH 847

Query: 501 GNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISW 560
            NI++G +    L++  P+ SAT+ L+S+IY+   +    +  R+L+ +R  KKE   SW
Sbjct: 848 KNIEIGERAAHHLLELEPEDSATYVLISNIYAVSRQWIHRDWSRKLMKDRGVKKEPGRSW 907

Query: 561 IEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQMGE 596
           IE++N VHAF   D LHP+ + +Y  +  L  +  E
Sbjct: 908 IEVKNAVHAFYAGDKLHPLTNQIYEYIGHLNRRTSE 943



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 120/483 (24%), Positives = 209/483 (43%), Gaps = 69/483 (14%)

Query: 11  NRKNLPNNCLIQSFLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKL 70
           +R  +  N LI     L+ +G    A+     + +  ++    T+A +L  CA   +L  
Sbjct: 324 SRDGVSYNSLISG---LVQQGFSDRALELFTKMQRDCLKPDCITVASLLSACASVGALHK 380

Query: 71  GKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYA 130
           G ++H H  +    +    L   L+ +Y KC     A K F     +N+  +N ML  Y 
Sbjct: 381 GMQLHSH-AIKAGMSADIILEGSLLDLYSKCADVETAHKFFLTTETENIVLWNVMLVAYG 439

Query: 131 NLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAG 190
            L  +  +  +F  M    ++                                N+F++  
Sbjct: 440 QLDNLSDSFEIFRQMQMEGMIP-------------------------------NQFTYPS 468

Query: 191 ILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARD 250
           IL  C  L  L L  Q+H  V+ TGF  NV + S ++D YAK G+L+ A R+       D
Sbjct: 469 ILRTCTSLGALYLGEQIHTHVIKTGFQLNVYVCSVLIDMYAKYGQLALALRILRRLPEDD 528

Query: 251 VLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMI 310
           V++WT M++GY +         +F+E                        AL+LF  M  
Sbjct: 529 VVSWTAMIAGYVQ-------HDMFSE------------------------ALQLFEEMEY 557

Query: 311 LRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLND 370
             I+ +   F+S + ACA I +L+ G+Q+H       F ++  + ++LI +Y++CG + +
Sbjct: 558 RGIQFDNIGFASAISACAGIRALRQGQQIHAQSYAAGFGADLSINNALISLYARCGRIQE 617

Query: 371 GRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACT 430
               F+   +K N++ WN+++S L Q GY E+A+++F  M+R+  + +  T    ++A  
Sbjct: 618 AYLAFEKIGDK-NNISWNSLVSGLAQSGYFEEALQVFVRMLRTEAEVNMFTYGSAISAAA 676

Query: 431 HSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLW 490
               +++G     SM    G    +E    LI L A++G       +   M  E +   W
Sbjct: 677 SLANIKQG-QQIHSMVLKTGYDSEREVSNSLISLYAKSGSISDAWREFNDMS-ERNVISW 734

Query: 491 NAL 493
           NA+
Sbjct: 735 NAM 737



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 109/410 (26%), Positives = 189/410 (46%), Gaps = 71/410 (17%)

Query: 34  SEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNH 93
           S+ I  ++ + +RG+R   +   ++L+ C  S SL    R+H  +  +        L + 
Sbjct: 40  SKRIQLMNFMEERGVRSNYQNYLWLLEGCLTSGSLFETMRLHCRISKSGFDGEP-LLIDS 98

Query: 94  LISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSW 153
           L+  YF+ G    A KVFD+                                + R V SW
Sbjct: 99  LVDNYFRHGDQHGAVKVFDE-------------------------------NSNRSVFSW 127

Query: 154 NTMIIGYAKSGAVEEGLKFYKVLRRF---SISCNEFSFAGILTICVKLE-ELKLTRQVHG 209
           N MI  +    A +   + + + RR     I+ N ++FAG+L  CV  +      +QVH 
Sbjct: 128 NKMIHVFV---AQKSNFQVFCLFRRMLAEGITPNGYTFAGVLKACVGGDIAFNYVKQVHS 184

Query: 210 QVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMES 269
           +    GF S+ ++++ ++D Y+K G +  A+++F+    +D++TW  M+S          
Sbjct: 185 RTFYYGFDSSPLVANLLIDLYSKNGYIESAKKVFNCICMKDIVTWVAMIS---------- 234

Query: 270 ASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACAS 329
                                G ++NGL ++A+ LF  M    I P  +  SS L A   
Sbjct: 235 ---------------------GLSQNGLEEEAILLFCDMHASEIFPTPYVLSSVLSASTK 273

Query: 330 IVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNT 389
           I   + G+Q+H  +I+  F S T V + L+ +YS+   L    ++F  T N  + + +N+
Sbjct: 274 IQLFELGEQLHCLVIKWGFHSETYVCNGLVALYSRSRKLISAERIFS-TMNSRDGVSYNS 332

Query: 390 MISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGL 439
           +IS L Q G+ ++A+ LF  M R  +KPD IT+A +L+AC   G + +G+
Sbjct: 333 LISGLVQQGFSDRALELFTKMQRDCLKPDCITVASLLSACASVGALHKGM 382



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 103/386 (26%), Positives = 181/386 (46%), Gaps = 44/386 (11%)

Query: 111 FDKIP-VKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEG 169
           FD  P V NL     ++  Y+  G ++ A+ +F+ +  +D+V+W  MI G +++G  EE 
Sbjct: 191 FDSSPLVANL-----LIDLYSKNGYIESAKKVFNCICMKDIVTWVAMISGLSQNGLEEEA 245

Query: 170 LKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDA 229
           +  +  +    I    +  + +L+   K++  +L  Q+H  V+  GF S   + + +V  
Sbjct: 246 ILLFCDMHASEIFPTPYVLSSVLSASTKIQLFELGEQLHCLVIKWGFHSETYVCNGLVAL 305

Query: 230 YAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLI 289
           Y++  +L  A R+F   ++RD +++ +++SG  +                          
Sbjct: 306 YSRSRKLISAERIFSTMNSRDGVSYNSLISGLVQ-------------------------- 339

Query: 290 AGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFR 349
                 G   +ALELFT+M    ++P+  T +S L ACAS+ +L  G Q+H   I+    
Sbjct: 340 -----QGFSDRALELFTKMQRDCLKPDCITVASLLSACASVGALHKGMQLHSHAIKAGMS 394

Query: 350 SNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHD 409
           ++ I+  SL+D+YSKC  +    + F LT   EN +LWN M+ A  Q      +  +F  
Sbjct: 395 ADIILEGSLLDLYSKCADVETAHKFF-LTTETENIVLWNVMLVAYGQLDNLSDSFEIFRQ 453

Query: 410 MVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDL--GIIPNQEHHACLIELLAQ 467
           M    + P++ T   IL  CT  G +  G    +  TH +  G   N    + LI++ A+
Sbjct: 454 MQMEGMIPNQFTYPSILRTCTSLGALYLGE---QIHTHVIKTGFQLNVYVCSVLIDMYAK 510

Query: 468 AGCSDQLMNQLEKMPYEHDSYLWNAL 493
            G     +  L ++P E D   W A+
Sbjct: 511 YGQLALALRILRRLP-EDDVVSWTAM 535



 Score =  138 bits (347), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 89/371 (23%), Positives = 175/371 (47%), Gaps = 34/371 (9%)

Query: 123 NNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSIS 182
           N +++ Y+    +  A  +F  M  RD VS+N++I G  + G  +  L+ +  ++R  + 
Sbjct: 300 NGLVALYSRSRKLISAERIFSTMNSRDGVSYNSLISGLVQQGFSDRALELFTKMQRDCLK 359

Query: 183 CNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRL 242
            +  + A +L+ C  +  L    Q+H   +  G  +++++  S++D Y+KC ++  A + 
Sbjct: 360 PDCITVASLLSACASVGALHKGMQLHSHAIKAGMSADIILEGSLLDLYSKCADVETAHKF 419

Query: 243 FDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKAL 302
           F  T+  +++ W  M+  Y +L ++                                 + 
Sbjct: 420 FLTTETENIVLWNVMLVAYGQLDNLSD-------------------------------SF 448

Query: 303 ELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMY 362
           E+F +M +  + PNQ T+ S L  C S+ +L  G+Q+H  +I+T F+ N  V S LIDMY
Sbjct: 449 EIFRQMQMEGMIPNQFTYPSILRTCTSLGALYLGEQIHTHVIKTGFQLNVYVCSVLIDMY 508

Query: 363 SKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITL 422
           +K G L    ++      +++ + W  MI+   QH    +A++LF +M    ++ D I  
Sbjct: 509 AKYGQLALALRILRRLP-EDDVVSWTAMIAGYVQHDMFSEALQLFEEMEYRGIQFDNIGF 567

Query: 423 AVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMP 482
           A  ++AC     +++G     + ++  G   +   +  LI L A+ G   +     EK+ 
Sbjct: 568 ASAISACAGIRALRQG-QQIHAQSYAAGFGADLSINNALISLYARCGRIQEAYLAFEKIG 626

Query: 483 YEHDSYLWNAL 493
            + ++  WN+L
Sbjct: 627 -DKNNISWNSL 636


>gi|325260825|gb|ADZ04643.1| hypothetical protein [Oryza punctata]
          Length = 674

 Score =  293 bits (750), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 160/535 (29%), Positives = 279/535 (52%), Gaps = 39/535 (7%)

Query: 49  RLPAE---TLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDV 105
           ++PA+   +   I+   A++  L+  + V+  +   Q + P    SN L++ Y + G   
Sbjct: 125 KMPAKNAVSYGAIISGLAKAGMLREAELVYEEMP-QQWRDPVG--SNALMAGYLRVGELA 181

Query: 106 DARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGA 165
            A +VF+ + V+++ S++ M+ G    G +  AR +FD M ER VVSW +MI GY K G 
Sbjct: 182 MALRVFEGMTVRDVISWSAMVDGLCKHGSVSEARRVFDAMPERSVVSWTSMIRGYVKRGM 241

Query: 166 VEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSS 225
             +GL  +  +RR  +  N  + + +L  C      +   Q+H  ++  GF  ++ +  S
Sbjct: 242 CSDGLLLFLNMRREGVQVNATTLSVVLDACAGASLAREGIQIHNLIISMGFELDIFLGDS 301

Query: 226 IVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSW 285
           ++  Y++ G ++DA+R F+    +D+++W ++++GY +   +E A  LF  MP+K+ VSW
Sbjct: 302 VIIMYSRFGWMADAQRAFNCMQQKDIVSWNSLITGYVQHDMVEEAHVLFKLMPQKDAVSW 361

Query: 286 TTLIAGYTRNGLGQKALELFTRMMILRI-------------------------------R 314
           T+++ G+   G  ++++ELF +M +  +                               +
Sbjct: 362 TSMVVGFANRGWMRESVELFEQMPVKDVVAWTAIISSFITNGDYLSAVRWFCRMSQEGCK 421

Query: 315 PNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQV 374
           PN  TFS  L A AS+  L  G+Q H + I   +  ++ V +SLI MY+KCG L +   V
Sbjct: 422 PNTITFSCLLSALASLAMLNQGRQAHAYSINMGWVFDSAVHTSLISMYAKCGRLAEAHHV 481

Query: 375 FDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGL 434
           F    N     + N+MI+A  QHG+ E A++LF  M  +  KP+ +T   IL  C  +G 
Sbjct: 482 FSSISNPSLIAI-NSMITAFVQHGFAEDALKLFTKMQNAGYKPNHVTFLGILTGCARAGF 540

Query: 435 VQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALH 494
           VQ+G  YFESM    G+ PN EH+ C+++LL +AG   + +  +  MP    S  W AL 
Sbjct: 541 VQQGYNYFESMRPVYGVEPNPEHYTCMVDLLGRAGLLAEALEMINSMPQNDHSDAWAALL 600

Query: 495 GVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALG-KGRLVEKVRQLIN 548
               +H N+   +    +L++++P  +  + +LS ++S+ G +   ++KV QL N
Sbjct: 601 SASSLHSNLAFAKIAAQKLLEKDPYDATAYTVLSKMFSSAGMEYEEMQKVVQLSN 655



 Score =  173 bits (439), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 105/355 (29%), Positives = 186/355 (52%), Gaps = 13/355 (3%)

Query: 92  NHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVV 151
           N L++ Y + G   DA+ +FD++P +++ S+  +L+ YA+ G +  AR +FD+M  R+  
Sbjct: 42  NALLTAYGRRGRLRDAQLLFDQMPSRDVISWTALLTAYADGGDLASARLVFDDMPRRNAP 101

Query: 152 SWNTMIIGYAKSGAVEEGLK-FYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQ 210
           SWN ++  Y ++         FYK+  +     N  S+  I++   K   L+    V+ +
Sbjct: 102 SWNALLSVYLRAARPRAAHALFYKMPAK-----NAVSYGAIISGLAKAGMLREAELVYEE 156

Query: 211 VLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESA 270
           +       + V S++++  Y + GEL+ A R+F+    RDV++W+ MV G  K G +  A
Sbjct: 157 MPQQ--WRDPVGSNALMAGYLRVGELAMALRVFEGMTVRDVISWSAMVDGLCKHGSVSEA 214

Query: 271 SKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASI 330
            ++F+ MPE++ VSWT++I GY + G+    L LF  M    ++ N  T S  L ACA  
Sbjct: 215 RRVFDAMPERSVVSWTSMIRGYVKRGMCSDGLLLFLNMRREGVQVNATTLSVVLDACAGA 274

Query: 331 VSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTM 390
              + G Q+H  +I   F  +  +  S+I MYS+ G + D ++ F+    K+  + WN++
Sbjct: 275 SLAREGIQIHNLIISMGFELDIFLGDSVIIMYSRFGWMADAQRAFNCMQQKD-IVSWNSL 333

Query: 391 ISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESM 445
           I+   QH   E+A  LF  M +     D ++   ++    + G ++E +  FE M
Sbjct: 334 ITGYVQHDMVEEAHVLFKLMPQK----DAVSWTSMVVGFANRGWMRESVELFEQM 384



 Score =  122 bits (306), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 90/408 (22%), Positives = 178/408 (43%), Gaps = 76/408 (18%)

Query: 28  ISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPT 87
           + +G  S+ +     + + G+++ A TL+ +L  CA +   + G ++H +L ++      
Sbjct: 237 VKRGMCSDGLLLFLNMRREGVQVNATTLSVVLDACAGASLAREGIQIH-NLIISMGFELD 295

Query: 88  TFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAE 147
            FL + +I MY + G   DA++ F+ +  K++ S+N++++GY    M++ A  LF  M +
Sbjct: 296 IFLGDSVIIMYSRFGWMADAQRAFNCMQQKDIVSWNSLITGYVQHDMVEEAHVLFKLMPQ 355

Query: 148 RDVVSWNTMIIGYAKSGAVEEGLKFYK-------------------------VLRRF--- 179
           +D VSW +M++G+A  G + E ++ ++                          +R F   
Sbjct: 356 KDAVSWTSMVVGFANRGWMRESVELFEQMPVKDVVAWTAIISSFITNGDYLSAVRWFCRM 415

Query: 180 ---SISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGEL 236
                  N  +F+ +L+    L  L   RQ H   +  G++ +  + +S++  YAKCG L
Sbjct: 416 SQEGCKPNTITFSCLLSALASLAMLNQGRQAHAYSINMGWVFDSAVHTSLISMYAKCGRL 475

Query: 237 SDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNG 296
           ++A  +F       ++   +M++ + + G  E A KLF +M            AGY    
Sbjct: 476 AEAHHVFSSISNPSLIAINSMITAFVQHGFAEDALKLFTKMQN----------AGY---- 521

Query: 297 LGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHG-------KQVHGFLIRTNFR 349
                            +PN  TF   L  CA    ++ G       + V+G        
Sbjct: 522 -----------------KPNHVTFLGILTGCARAGFVQQGYNYFESMRPVYG------VE 558

Query: 350 SNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQH 397
            N    + ++D+  + G L +  ++ +     ++S  W  ++SA + H
Sbjct: 559 PNPEHYTCMVDLLGRAGLLAEALEMINSMPQNDHSDAWAALLSASSLH 606


>gi|359494657|ref|XP_002264130.2| PREDICTED: pentatricopeptide repeat-containing protein At4g13650-like
            [Vitis vinifera]
          Length = 1724

 Score =  293 bits (750), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 145/469 (30%), Positives = 260/469 (55%), Gaps = 33/469 (7%)

Query: 123  NNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSIS 182
            N +++ Y  LGMM  A+ +   M + D V+WN +I G+A++    E +K YK++R   I 
Sbjct: 1188 NALVTMYGKLGMMMEAKKVLQTMPQPDRVTWNALIGGHAENEEPNEAVKAYKLIREKGIP 1247

Query: 183  CNEFSFAGILTICVKLEEL-KLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARR 241
             N  +   +L  C   ++L K    +H  +++TGF S+  + +S++  YAKC        
Sbjct: 1248 ANYITMVSVLGACSAPDDLLKHGMPIHAHIVLTGFESDDYVKNSLITMYAKC-------- 1299

Query: 242  LFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKA 301
                                   GD+ S++ +F+ +  K+P++W  ++A    +G G++A
Sbjct: 1300 -----------------------GDLNSSNYIFDGLGNKSPITWNAMVAANAHHGCGEEA 1336

Query: 302  LELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDM 361
            L++F  M  + +  +Q +FS  L A A++  L+ G+Q+HG +I+  F S+  V ++ +DM
Sbjct: 1337 LKIFGEMRNVGVNLDQFSFSGGLAATANLAVLEEGQQLHGLVIKLGFESDLHVTNAAMDM 1396

Query: 362  YSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKIT 421
            Y KCG ++D  ++     N+ + + WN +ISA  +HG  ++A   FH+M++   KPD +T
Sbjct: 1397 YGKCGEMHDVLKMLPQPINR-SRLSWNILISAFARHGCFQKARETFHEMLKLGPKPDHVT 1455

Query: 422  LAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKM 481
               +L+AC H GLV EGL Y++SMT + G+ P  EH  C+I+LL ++G        +++M
Sbjct: 1456 FVSLLSACNHGGLVDEGLAYYDSMTREFGVFPGIEHCVCIIDLLGRSGRLSHAEGFIKEM 1515

Query: 482  PYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVE 541
            P   +   W +L   CRIHGN+++ RK  + L++ +P   + + L S++ +  GK   VE
Sbjct: 1516 PVPPNDLAWRSLLAACRIHGNLELARKTAEHLLELDPSDDSAYVLYSNVCATSGKWEDVE 1575

Query: 542  KVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQL 590
             +R+ +     KK+ A SW+++++KVH+F + +  HP    + + L +L
Sbjct: 1576 NLRKEMGSNNIKKQPACSWVKLKDKVHSFGMGEKYHPQASRISAKLGEL 1624



 Score =  234 bits (597), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 136/452 (30%), Positives = 227/452 (50%), Gaps = 33/452 (7%)

Query: 116 VKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKV 175
           V+NLF  + ++  ++  G M+ A  LF  M ERDVVSWN MI GYA  G  ++    ++ 
Sbjct: 163 VENLFVKSALVDFHSKCGKMEDASYLFGTMMERDVVSWNAMIGGYAVQGFADDSFCMFRS 222

Query: 176 LRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGE 235
           + R  +  + ++   +L    +   L +  Q+HG +   G+ S  +++  +++AYAK   
Sbjct: 223 MLRGGLVPDCYTLGSVLRASAEGGGLIIANQIHGIITQLGYGSYDIVTGLLINAYAKN-- 280

Query: 236 LSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRN 295
                                        G + SA  L   M +K+  S T LI GY   
Sbjct: 281 -----------------------------GSLRSAKDLRKGMLKKDLFSSTALITGYAHE 311

Query: 296 GL-GQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIV 354
           G+    AL+LF  M  + I  +     S L  CA++ S   G Q+H F ++     +  +
Sbjct: 312 GIYSVDALDLFKEMNQMNIGMDDVILCSMLNICANLASFALGTQIHAFALKYQPSYDVAM 371

Query: 355 MSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSS 414
            ++LIDMY+K G + D ++ FD  + K N + W ++IS   +HGY   A+ L+  M    
Sbjct: 372 GNALIDMYAKSGEIEDAKRAFDEMEEK-NVISWTSLISGYAKHGYGHMAVSLYKKMESKG 430

Query: 415 VKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQL 474
            KP+ +T   +L AC+H+GL  EG   F +M +   I P  EH++C+++L A+ G  ++ 
Sbjct: 431 FKPNDVTFLSLLFACSHTGLTAEGCECFNNMVNKYNIKPRAEHYSCMVDLFARQGLLEEA 490

Query: 475 MNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSAL 534
            N L K+  +H++ LW A+ G   I+G + +G++    L +  P++S  + +L+SIYSA 
Sbjct: 491 YNLLCKIDIKHNASLWGAILGASSIYGYMSLGKEAASNLFNMQPENSVNYVVLASIYSAA 550

Query: 535 GKGRLVEKVRQLINERQFKKEQAISWIEIENK 566
           G      K+R+L+ ER  KK    S+ +   K
Sbjct: 551 GLWDDAWKIRKLMEERSTKKNAGYSFFQATKK 582



 Score =  162 bits (409), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 116/421 (27%), Positives = 191/421 (45%), Gaps = 37/421 (8%)

Query: 123  NNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSIS 182
            N +L+ Y+  G  + A  +F  M ERD++SWN+M+  Y + G   +GLK    L +    
Sbjct: 1087 NTLLTLYSEAGRSEDAELVFQAMTERDLISWNSMMACYVQDGKCLDGLKILAELLQMGKV 1146

Query: 183  CNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRL 242
             N  +FA  L  C   E L  ++ VH  ++V GF   +++ +++V               
Sbjct: 1147 MNHVTFASALAACSNPECLIESKIVHALIIVAGFHDFLIVGNALV--------------- 1191

Query: 243  FDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKAL 302
                         TM   Y KLG M  A K+   MP+ + V+W  LI G+  N    +A+
Sbjct: 1192 -------------TM---YGKLGMMMEAKKVLQTMPQPDRVTWNALIGGHAENEEPNEAV 1235

Query: 303  ELFTRMMILRIRPNQHTFSSCLCACASIVS-LKHGKQVHGFLIRTNFRSNTIVMSSLIDM 361
            + +  +    I  N  T  S L AC++    LKHG  +H  ++ T F S+  V +SLI M
Sbjct: 1236 KAYKLIREKGIPANYITMVSVLGACSAPDDLLKHGMPIHAHIVLTGFESDDYVKNSLITM 1295

Query: 362  YSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKIT 421
            Y+KCG LN    +FD   NK + + WN M++A   HG  E+A+++F +M    V  D+ +
Sbjct: 1296 YAKCGDLNSSNYIFDGLGNK-SPITWNAMVAANAHHGCGEEALKIFGEMRNVGVNLDQFS 1354

Query: 422  LAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKM 481
             +  L A  +  +++EG      +   LG   +       +++  + G    ++  L + 
Sbjct: 1355 FSGGLAATANLAVLEEG-QQLHGLVIKLGFESDLHVTNAAMDMYGKCGEMHDVLKMLPQ- 1412

Query: 482  PYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVE 541
            P       WN L      HG     R+   +++   P+    H    S+ SA   G LV+
Sbjct: 1413 PINRSRLSWNILISAFARHGCFQKARETFHEMLKLGPKPD--HVTFVSLLSACNHGGLVD 1470

Query: 542  K 542
            +
Sbjct: 1471 E 1471



 Score =  147 bits (371), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 90/293 (30%), Positives = 144/293 (49%), Gaps = 33/293 (11%)

Query: 119  LFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRR 178
            +F  N +++ Y+  G ++HAR +FD M  R+  SW+TM+ GY + G  EE +  +  +  
Sbjct: 779  IFQTNTLINMYSKFGNIEHARYVFDEMRHRNEASWSTMLSGYVRVGLYEEAVGLFCQMWG 838

Query: 179  FSISCNEFSFAGILTICVKLEELKLTR-QVHGQVLVTGFLSNVVISSSIVDAYAKCGELS 237
              +  N F  A ++T C +   +     QVHG V+ TG L +V +               
Sbjct: 839  LGVEPNGFMVASLITACSRSGYMADEGFQVHGFVVKTGILGDVYVG-------------- 884

Query: 238  DARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGL 297
                             T +V  Y  +G + +A KLF EMP+ N VSWT+L+ GY+ +G 
Sbjct: 885  -----------------TALVHFYGSIGLVYNAQKLFEEMPDHNVVSWTSLMVGYSDSGN 927

Query: 298  GQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSS 357
              + L ++ RM    +  NQ+TF++   +C  +     G QV G +I+  F  +  V +S
Sbjct: 928  PGEVLNVYQRMRQEGVSGNQNTFATVTSSCGLLEDQVLGYQVLGHIIQYGFEDSVSVANS 987

Query: 358  LIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDM 410
            LI M+S    + +   VFD   N+ + + WN MISA   HG   +++R FH M
Sbjct: 988  LISMFSSFSSVEEACYVFDHM-NECDIISWNAMISAYAHHGLCRESLRCFHWM 1039



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 95/371 (25%), Positives = 183/371 (49%), Gaps = 42/371 (11%)

Query: 129  YANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSF 188
            Y ++G++ +A+ LF+ M + +VVSW ++++GY+ SG   E L  Y+ +R+  +S N+ +F
Sbjct: 891  YGSIGLVYNAQKLFEEMPDHNVVSWTSLMVGYSDSGNPGEVLNVYQRMRQEGVSGNQNTF 950

Query: 189  AGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDA 248
            A + + C  LE+  L  QV G ++  GF  +V +++S++  ++    + +A  +FD  + 
Sbjct: 951  ATVTSSCGLLEDQVLGYQVLGHIIQYGFEDSVSVANSLISMFSSFSSVEEACYVFDHMNE 1010

Query: 249  RDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRM 308
             D+++W  M+S YA                                +GL +++L  F  M
Sbjct: 1011 CDIISWNAMISAYA-------------------------------HHGLCRESLRCFHWM 1039

Query: 309  MILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCL 368
              L    N  T SS L  C+S+ +LK G+ +HG +++    SN  + ++L+ +YS+ G  
Sbjct: 1040 RHLHNETNSTTLSSLLSVCSSVDNLKWGRGIHGLVVKLGLDSNVCICNTLLTLYSEAGRS 1099

Query: 369  NDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNA 428
             D   VF     ++  + WN+M++   Q G     +++  ++++     + +T A  L A
Sbjct: 1100 EDAELVFQAMTERD-LISWNSMMACYVQDGKCLDGLKILAELLQMGKVMNHVTFASALAA 1158

Query: 429  CTH-SGLVQEGLTY---FESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYE 484
            C++   L++  + +     +  HD  I+ N      L+ +  + G   +    L+ MP +
Sbjct: 1159 CSNPECLIESKIVHALIIVAGFHDFLIVGN-----ALVTMYGKLGMMMEAKKVLQTMP-Q 1212

Query: 485  HDSYLWNALHG 495
             D   WNAL G
Sbjct: 1213 PDRVTWNALIG 1223



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 78/308 (25%), Positives = 146/308 (47%), Gaps = 32/308 (10%)

Query: 123  NNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSIS 182
            N+++S +++   ++ A  +FD+M E D++SWN MI  YA  G   E L+ +  +R     
Sbjct: 986  NSLISMFSSFSSVEEACYVFDHMNECDIISWNAMISAYAHHGLCRESLRCFHWMRHLHNE 1045

Query: 183  CNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRL 242
             N  + + +L++C  ++ LK  R +HG V+  G  SNV I ++++  Y++ G   DA  +
Sbjct: 1046 TNSTTLSSLLSVCSSVDNLKWGRGIHGLVVKLGLDSNVCICNTLLTLYSEAGRSEDAELV 1105

Query: 243  FDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKAL 302
            F     RD+++W +M++ Y + G      K+  E+ +   V                   
Sbjct: 1106 FQAMTERDLISWNSMMACYVQDGKCLDGLKILAELLQMGKVM------------------ 1147

Query: 303  ELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMY 362
                         N  TF+S L AC++   L   K VH  +I   F    IV ++L+ MY
Sbjct: 1148 -------------NHVTFASALAACSNPECLIESKIVHALIIVAGFHDFLIVGNALVTMY 1194

Query: 363  SKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITL 422
             K G + + ++V   T  + + + WN +I    ++    +A++ +  +    +  + IT+
Sbjct: 1195 GKLGMMMEAKKVLQ-TMPQPDRVTWNALIGGHAENEEPNEAVKAYKLIREKGIPANYITM 1253

Query: 423  AVILNACT 430
              +L AC+
Sbjct: 1254 VSVLGACS 1261



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 76/280 (27%), Positives = 138/280 (49%), Gaps = 37/280 (13%)

Query: 34   SEAISSLDLLAQRGIRLPAETLAFILQQC-AESKSLKLGKRVHLHLKLTQRKTPTTFLSN 92
            +EA+ +  L+ ++GI     T+  +L  C A    LK G  +H H+ LT  ++   ++ N
Sbjct: 1232 NEAVKAYKLIREKGIPANYITMVSVLGACSAPDDLLKHGMPIHAHIVLTGFES-DDYVKN 1290

Query: 93   HLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVS 152
             LI+MY KCG    +  +FD +  K+  ++N M++  AN                     
Sbjct: 1291 SLITMYAKCGDLNSSNYIFDGLGNKSPITWNAMVA--AN--------------------- 1327

Query: 153  WNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVL 212
                    A  G  EE LK +  +R   ++ ++FSF+G L     L  L+  +Q+HG V+
Sbjct: 1328 --------AHHGCGEEALKIFGEMRNVGVNLDQFSFSGGLAATANLAVLEEGQQLHGLVI 1379

Query: 213  VTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASK 272
              GF S++ ++++ +D Y KCGE+ D  ++  +   R  L+W  ++S +A+ G  + A +
Sbjct: 1380 KLGFESDLHVTNAAMDMYGKCGEMHDVLKMLPQPINRSRLSWNILISAFARHGCFQKARE 1439

Query: 273  LFNEM----PEKNPVSWTTLIAGYTRNGLGQKALELFTRM 308
             F+EM    P+ + V++ +L++     GL  + L  +  M
Sbjct: 1440 TFHEMLKLGPKPDHVTFVSLLSACNHGGLVDEGLAYYDSM 1479



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 72/311 (23%), Positives = 144/311 (46%), Gaps = 50/311 (16%)

Query: 202  KLTRQVHGQVL----VTGFLS-NVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTT 256
            ++T Q+ G+ L    + G ++  +  ++++++ Y+K G +  AR +FDE   R+  +W+T
Sbjct: 756  EITSQMAGKALHAFCIVGSVNLGIFQTNTLINMYSKFGNIEHARYVFDEMRHRNEASWST 815

Query: 257  MVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPN 316
            M+SGY ++G  E A  LF +M       W          GLG              + PN
Sbjct: 816  MLSGYVRVGLYEEAVGLFCQM-------W----------GLG--------------VEPN 844

Query: 317  QHTFSSCLCACA-SIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVF 375
                +S + AC+ S      G QVHGF+++T    +  V ++L+  Y   G + + +++F
Sbjct: 845  GFMVASLITACSRSGYMADEGFQVHGFVVKTGILGDVYVGTALVHFYGSIGLVYNAQKLF 904

Query: 376  DLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLV 435
            +   +  N + W +++   +  G   + + ++  M +  V  ++ T A + ++C   GL+
Sbjct: 905  EEMPD-HNVVSWTSLMVGYSDSGNPGEVLNVYQRMRQEGVSGNQNTFATVTSSC---GLL 960

Query: 436  QEGLTYFESMTH--DLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNAL 493
            ++ +  ++ + H    G   +      LI + +     ++     + M  E D   WNA+
Sbjct: 961  EDQVLGYQVLGHIIQYGFEDSVSVANSLISMFSSFSSVEEACYVFDHMN-ECDIISWNAM 1019

Query: 494  ------HGVCR 498
                  HG+CR
Sbjct: 1020 ISAYAHHGLCR 1030



 Score = 70.5 bits (171), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 66/249 (26%), Positives = 102/249 (40%), Gaps = 26/249 (10%)

Query: 261 YAKLGDMESASKLFNEMPEKNPVSWT------TLIAGYTRNG-LGQKALELFTRMMILRI 313
           +A +  + +AS L NE P +N           T  AG  R G L     ++F +      
Sbjct: 680 WAPVSTITTASALINETPVENFAEQVKDDDLKTSNAGSRRWGCLDGDIAKVFLQ------ 733

Query: 314 RPNQHTFSSCLCACA---------SIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSK 364
              QHT     C  A          I S   GK +H F I  +        ++LI+MYSK
Sbjct: 734 --QQHTDYGIRCLNAVNFPLKGFSEITSQMAGKALHAFCIVGSVNLGIFQTNTLINMYSK 791

Query: 365 CGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAV 424
            G +   R VFD   ++ N   W+TM+S   + G  E+A+ LF  M    V+P+   +A 
Sbjct: 792 FGNIEHARYVFDEMRHR-NEASWSTMLSGYVRVGLYEEAVGLFCQMWGLGVEPNGFMVAS 850

Query: 425 ILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYE 484
           ++ AC+ SG + +            GI+ +      L+      G         E+MP +
Sbjct: 851 LITACSRSGYMADEGFQVHGFVVKTGILGDVYVGTALVHFYGSIGLVYNAQKLFEEMP-D 909

Query: 485 HDSYLWNAL 493
           H+   W +L
Sbjct: 910 HNVVSWTSL 918



 Score = 50.1 bits (118), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 66/287 (22%), Positives = 121/287 (42%), Gaps = 33/287 (11%)

Query: 35   EAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVH-LHLKLTQRKTPTTFLSNH 93
            EA+     +   G+ L   + +  L   A    L+ G+++H L +KL         ++N 
Sbjct: 1335 EALKIFGEMRNVGVNLDQFSFSGGLAATANLAVLEEGQQLHGLVIKLGFESD--LHVTNA 1392

Query: 94   LISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNM----AERD 149
             + MY KCG   D  K+  +   ++  S+N ++S +A  G  + AR  F  M     + D
Sbjct: 1393 AMDMYGKCGEMHDVLKMLPQPINRSRLSWNILISAFARHGCFQKARETFHEMLKLGPKPD 1452

Query: 150  VVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEEL--KLTRQV 207
             V++ +++      G V+EGL +Y  + R      EF     +  CV + +L  +  R  
Sbjct: 1453 HVTFVSLLSACNHGGLVDEGLAYYDSMTR------EFGVFPGIEHCVCIIDLLGRSGRLS 1506

Query: 208  HGQVLVTGFLSNVVISS------SIVDAYAKCGELSDARRL------FDETDARDVLTWT 255
            H +    GF+  + +        S++ A    G L  AR+        D +D    + ++
Sbjct: 1507 HAE----GFIKEMPVPPNDLAWRSLLAACRIHGNLELARKTAEHLLELDPSDDSAYVLYS 1562

Query: 256  TMVSGYAKLGDMESASKLF--NEMPEKNPVSWTTLIAGYTRNGLGQK 300
             + +   K  D+E+  K    N + ++   SW  L       G+G+K
Sbjct: 1563 NVCATSGKWEDVENLRKEMGSNNIKKQPACSWVKLKDKVHSFGMGEK 1609


>gi|42566761|ref|NP_193101.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635639|sp|Q9SVP7.2|PP307_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g13650
 gi|332657909|gb|AEE83309.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 1064

 Score =  293 bits (750), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 164/573 (28%), Positives = 293/573 (51%), Gaps = 67/573 (11%)

Query: 27  LISKGQLSEAISSLDLLAQRGIR--LPAE-TLAFILQQCAESKSLKLGKRVHLHLKLTQR 83
           L++ G L +  +S  +  Q  I   +P + T   IL+ C     L+LG+++H        
Sbjct: 462 LVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIH-------- 513

Query: 84  KTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFD 143
                   + +I   F+                 N +  + ++  YA LG +  A ++  
Sbjct: 514 --------SQIIKTNFQL----------------NAYVCSVLIDMYAKLGKLDTAWDILI 549

Query: 144 NMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKL 203
             A +DVVSW TMI GY +    ++ L  ++ +    I  +E      ++ C  L+ LK 
Sbjct: 550 RFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALKE 609

Query: 204 TRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAK 263
            +Q+H Q  V+GF S++   +++V  Y++CG++                           
Sbjct: 610 GQQIHAQACVSGFSSDLPFQNALVTLYSRCGKI--------------------------- 642

Query: 264 LGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSC 323
               E +   F +    + ++W  L++G+ ++G  ++AL +F RM    I  N  TF S 
Sbjct: 643 ----EESYLAFEQTEAGDNIAWNALVSGFQQSGNNEEALRVFVRMNREGIDNNNFTFGSA 698

Query: 324 LCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKEN 383
           + A +   ++K GKQVH  + +T + S T V ++LI MY+KCG ++D  + F L  + +N
Sbjct: 699 VKAASETANMKQGKQVHAVITKTGYDSETEVCNALISMYAKCGSISDAEKQF-LEVSTKN 757

Query: 384 SMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFE 443
            + WN +I+A ++HG+  +A+  F  M+ S+V+P+ +TL  +L+AC+H GLV +G+ YFE
Sbjct: 758 EVSWNAIINAYSKHGFGSEALDSFDQMIHSNVRPNHVTLVGVLSACSHIGLVDKGIAYFE 817

Query: 444 SMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNI 503
           SM  + G+ P  EH+ C++++L +AG   +    +++MP + D+ +W  L   C +H N+
Sbjct: 818 SMNSEYGLSPKPEHYVCVVDMLTRAGLLSRAKEFIQEMPIKPDALVWRTLLSACVVHKNM 877

Query: 504 DMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEI 563
           ++G      L++  P+ SAT+ LLS++Y+   K    +  RQ + E+  KKE   SWIE+
Sbjct: 878 EIGEFAAHHLLELEPEDSATYVLLSNLYAVSKKWDARDLTRQKMKEKGVKKEPGQSWIEV 937

Query: 564 ENKVHAFSVSDSLHPMRDVLYSVLEQLAGQMGE 596
           +N +H+F V D  HP+ D ++   + L  +  E
Sbjct: 938 KNSIHSFYVGDQNHPLADEIHEYFQDLTKRASE 970



 Score =  166 bits (421), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 137/533 (25%), Positives = 237/533 (44%), Gaps = 56/533 (10%)

Query: 18  NCLIQSFLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAES-KSLKLGKRVHL 76
           N L+  +  L   G L  A      ++QR   +   TL   L QC    K+++L KR+HL
Sbjct: 327 NALVSLYFHL---GNLISAEHIFSNMSQRDA-VTYNTLINGLSQCGYGEKAMELFKRMHL 382

Query: 77  HLKLTQRKTPTTFLSNHLISMYFKCGSD--VDARKVFDKIPVKNLFSYNNMLSG-----Y 129
                    P    SN L S+   C +D  +   +       K  F+ NN + G     Y
Sbjct: 383 -----DGLEPD---SNTLASLVVACSADGTLFRGQQLHAYTTKLGFASNNKIEGALLNLY 434

Query: 130 ANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFA 189
           A    ++ A + F      +VV WN M++ Y     +    + ++ ++   I  N++++ 
Sbjct: 435 AKCADIETALDYFLETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYP 494

Query: 190 GILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDAR 249
            IL  C++L +L+L  Q+H Q++ T F  N  + S ++D YAK                 
Sbjct: 495 SILKTCIRLGDLELGEQIHSQIIKTNFQLNAYVCSVLIDMYAK----------------- 537

Query: 250 DVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMM 309
                         LG +++A  +      K+ VSWTT+IAGYT+     KAL  F +M+
Sbjct: 538 --------------LGKLDTAWDILIRFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQML 583

Query: 310 ILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLN 369
              IR ++   ++ + ACA + +LK G+Q+H     + F S+    ++L+ +YS+CG + 
Sbjct: 584 DRGIRSDEVGLTNAVSACAGLQALKEGQQIHAQACVSGFSSDLPFQNALVTLYSRCGKIE 643

Query: 370 DGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNAC 429
           +    F+ T+  +N + WN ++S   Q G +E+A+R+F  M R  +  +  T    + A 
Sbjct: 644 ESYLAFEQTEAGDN-IAWNALVSGFQQSGNNEEALRVFVRMNREGIDNNNFTFGSAVKAA 702

Query: 430 THSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYL 489
           + +  +++G      +T   G     E    LI + A+ G       Q  ++  +++   
Sbjct: 703 SETANMKQGKQVHAVITKT-GYDSETEVCNALISMYAKCGSISDAEKQFLEVSTKNEVS- 760

Query: 490 WNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEK 542
           WNA+      HG         DQ+I  N + +  H  L  + SA     LV+K
Sbjct: 761 WNAIINAYSKHGFGSEALDSFDQMIHSNVRPN--HVTLVGVLSACSHIGLVDK 811



 Score =  166 bits (419), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 137/537 (25%), Positives = 234/537 (43%), Gaps = 108/537 (20%)

Query: 40  LDLLAQRGIRLPAETLAFILQQCAESK-SLKLGKRVHLHLKLTQRKTPTTFLSNHLISMY 98
           +D +  RGIR   +TL ++L+ C ++  SL  G+++H                    S  
Sbjct: 72  IDSVENRGIRPNHQTLKWLLEGCLKTNGSLDEGRKLH--------------------SQI 111

Query: 99  FKCGSDVD---ARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNT 155
            K G D +   + K+FD    K               G +  A  +FD M ER + +WN 
Sbjct: 112 LKLGLDSNGCLSEKLFDFYLFK---------------GDLYGAFKVFDEMPERTIFTWNK 156

Query: 156 MIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLE-ELKLTRQVHGQVLVT 214
           MI   A    + E    +  +   +++ NE +F+G+L  C        +  Q+H ++L  
Sbjct: 157 MIKELASRNLIGEVFGLFVRMVSENVTPNEGTFSGVLEACRGGSVAFDVVEQIHARILYQ 216

Query: 215 GFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLF 274
           G   + V+ + ++D Y++ G +  ARR+FD    +D  +W  M+SG +K           
Sbjct: 217 GLRDSTVVCNPLIDLYSRNGFVDLARRVFDGLRLKDHSSWVAMISGLSK----------- 265

Query: 275 NEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLK 334
                               N    +A+ LF  M +L I P  + FSS L AC  I SL+
Sbjct: 266 --------------------NECEAEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLE 305

Query: 335 HGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISAL 394
            G+Q+HG +++  F S+T V ++L+ +Y   G L     +F    ++ +++ +NT+I+ L
Sbjct: 306 IGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGNLISAEHIFS-NMSQRDAVTYNTLINGL 364

Query: 395 TQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPN 454
           +Q GY E+A+ LF  M    ++PD  TLA ++ AC+  G +  G     + T  LG   N
Sbjct: 365 SQCGYGEKAMELFKRMHLDGLEPDSNTLASLVVACSADGTLFRG-QQLHAYTTKLGFASN 423

Query: 455 QEHHACLIELLAQA----------------------------GCSDQLMNQ---LEKMPY 483
            +    L+ L A+                             G  D L N      +M  
Sbjct: 424 NKIEGALLNLYAKCADIETALDYFLETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQI 483

Query: 484 EH---DSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSA-THGLLSSIYSALGK 536
           E    + Y + ++   C   G++++G ++  Q+I  N Q +A    +L  +Y+ LGK
Sbjct: 484 EEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTNFQLNAYVCSVLIDMYAKLGK 540



 Score =  149 bits (376), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 110/430 (25%), Positives = 205/430 (47%), Gaps = 47/430 (10%)

Query: 17  NNCLIQSFLSL-ISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVH 75
           N CL +      + KG L  A    D + +R I     T   ++++ A S++L +G+   
Sbjct: 119 NGCLSEKLFDFYLFKGDLYGAFKVFDEMPERTIF----TWNKMIKELA-SRNL-IGEVFG 172

Query: 76  LHLKL-TQRKTPTTFLSNHLI------SMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSG 128
           L +++ ++  TP     + ++      S+ F     + AR ++  +    +   N ++  
Sbjct: 173 LFVRMVSENVTPNEGTFSGVLEACRGGSVAFDVVEQIHARILYQGLRDSTVVC-NPLIDL 231

Query: 129 YANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSF 188
           Y+  G +  AR +FD +  +D  SW  MI G +K+    E ++ +  +    I    ++F
Sbjct: 232 YSRNGFVDLARRVFDGLRLKDHSSWVAMISGLSKNECEAEAIRLFCDMYVLGIMPTPYAF 291

Query: 189 AGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDA 248
           + +L+ C K+E L++  Q+HG VL  GF S+  + ++                       
Sbjct: 292 SSVLSACKKIESLEIGEQLHGLVLKLGFSSDTYVCNA----------------------- 328

Query: 249 RDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRM 308
                   +VS Y  LG++ SA  +F+ M +++ V++ TLI G ++ G G+KA+ELF RM
Sbjct: 329 --------LVSLYFHLGNLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRM 380

Query: 309 MILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCL 368
            +  + P+ +T +S + AC++  +L  G+Q+H +  +  F SN  +  +L+++Y+KC  +
Sbjct: 381 HLDGLEPDSNTLASLVVACSADGTLFRGQQLHAYTTKLGFASNNKIEGALLNLYAKCADI 440

Query: 369 NDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNA 428
                 F L    EN +LWN M+ A         + R+F  M    + P++ T   IL  
Sbjct: 441 ETALDYF-LETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKT 499

Query: 429 CTHSGLVQEG 438
           C   G ++ G
Sbjct: 500 CIRLGDLELG 509


>gi|356546772|ref|XP_003541796.1| PREDICTED: pentatricopeptide repeat-containing protein At1g53600,
           mitochondrial-like [Glycine max]
          Length = 713

 Score =  293 bits (750), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 181/603 (30%), Positives = 314/603 (52%), Gaps = 52/603 (8%)

Query: 12  RKNLPNNCLIQSFLSLISKGQLSEAISSLDLLAQRG-IRLPAETLAFILQQCAESKSLKL 70
           R  + NN +I +++   +   + +A     +LA+R  +   A  + F+          K 
Sbjct: 101 RTTVSNNAMISAYIR--NGCNVGKAYELFSVLAERNLVSYAAMIMGFV----------KA 148

Query: 71  GKRVHLHLKLTQRKTPTTF----LSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNML 126
           GK  H+  KL  R+TP  F     SN LI+ Y K G   +A ++F+ +  +++ S++ M+
Sbjct: 149 GK-FHMAEKL-YRETPYEFRDPACSNALINGYLKMGEVNEALRIFENMGERDVVSWSAMV 206

Query: 127 SGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFS-ISCNE 185
            G    G +  AR+LFD M +R+VVSW+ MI GY   G  +EG   +  ++R   +  N 
Sbjct: 207 DGLCRDGRVAAARDLFDRMPDRNVVSWSAMIDGYMGEGFFQEGFCLFMDMKREGLVEVNS 266

Query: 186 FSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCG----------- 234
            +   +   C     +    Q+HG V   GF  + V+S+S++  Y+  G           
Sbjct: 267 TTMTIMFKACGNCGRMSEGMQIHGLVSRLGFEFDNVLSNSVITMYSMLGCTDMADKVFCT 326

Query: 235 --------------------ELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLF 274
                               E+  A R+F     +DV++WT M++G++K G +E+A +LF
Sbjct: 327 VSDKDIVTWNSLISGYIHNNEVEAAYRVFGRMPVKDVISWTAMIAGFSKSGRVENAIELF 386

Query: 275 NEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLK 334
           N +P K+   WT +I+G+  N   ++AL  + RM+    +PN  T SS L A A++V+L 
Sbjct: 387 NMLPAKDDFVWTAIISGFVNNNEYEEALHWYARMIWEGCKPNPLTISSVLAASAALVALN 446

Query: 335 HGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISAL 394
            G Q+H  +++ N   N  + +SLI  YSK G + D  ++F L   + N + +N++IS  
Sbjct: 447 EGLQIHTCILKMNLEYNLSIQNSLISFYSKSGNVVDAYRIF-LDVIEPNVISYNSIISGF 505

Query: 395 TQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPN 454
            Q+G+ ++A+ ++  M     +P+ +T   +L+ACTH+GLV EG   F +M    GI P 
Sbjct: 506 AQNGFGDEALGIYKKMQSEGHEPNHVTFLAVLSACTHAGLVDEGWNIFNTMKSHYGIEPE 565

Query: 455 QEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLI 514
            +H+AC++++L +AG  D+ ++ +  MP++  S +W A+ G  + H  +D+ +    ++ 
Sbjct: 566 ADHYACMVDILGRAGLLDEAIDLIRSMPFKPHSGVWGAILGASKTHLRLDLAKLAAQRIT 625

Query: 515 DQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSD 574
           D  P+++  + +LS++YSA GK    + V+   N +  KK    SWI ++NKVH F   D
Sbjct: 626 DLEPKNATPYVVLSNMYSAAGKKIDGDLVKMAKNLKGIKKSPGCSWITMKNKVHLFLAGD 685

Query: 575 SLH 577
             H
Sbjct: 686 QSH 688



 Score =  169 bits (427), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 104/343 (30%), Positives = 179/343 (52%), Gaps = 13/343 (3%)

Query: 102 GSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYA 161
           G+  +A  +F K+P+KN  S+  ML+ +A  G +++AR LFD M +R  VS N MI  Y 
Sbjct: 55  GNVKEAESIFHKMPIKNTASWTAMLTAFAQNGQIQNARRLFDEMPQRTTVSNNAMISAYI 114

Query: 162 KSGA-VEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNV 220
           ++G  V +  + + VL       N  S+A ++   VK  +  +  +++ +        + 
Sbjct: 115 RNGCNVGKAYELFSVLAER----NLVSYAAMIMGFVKAGKFHMAEKLYRETPYE--FRDP 168

Query: 221 VISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEK 280
             S+++++ Y K GE+++A R+F+    RDV++W+ MV G  + G + +A  LF+ MP++
Sbjct: 169 ACSNALINGYLKMGEVNEALRIFENMGERDVVSWSAMVDGLCRDGRVAAARDLFDRMPDR 228

Query: 281 NPVSWTTLIAGYTRNGLGQKALELFTRMMILR-IRPNQHTFSSCLCACASIVSLKHGKQV 339
           N VSW+ +I GY   G  Q+   LF  M     +  N  T +    AC +   +  G Q+
Sbjct: 229 NVVSWSAMIDGYMGEGFFQEGFCLFMDMKREGLVEVNSTTMTIMFKACGNCGRMSEGMQI 288

Query: 340 HGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGY 399
           HG + R  F  + ++ +S+I MYS  GC +   +VF    +K+  + WN++IS    +  
Sbjct: 289 HGLVSRLGFEFDNVLSNSVITMYSMLGCTDMADKVFCTVSDKD-IVTWNSLISGYIHNNE 347

Query: 400 DEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYF 442
            E A R+F    R  VK D I+   ++   + SG V+  +  F
Sbjct: 348 VEAAYRVFG---RMPVK-DVISWTAMIAGFSKSGRVENAIELF 386



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 61/293 (20%), Positives = 118/293 (40%), Gaps = 38/293 (12%)

Query: 256 TMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRP 315
           T ++   + G+++ A  +F++MP KN  SWT ++  + +NG  Q A  LF  M       
Sbjct: 46  TQIAENGRNGNVKEAESIFHKMPIKNTASWTAMLTAFAQNGQIQNARRLFDEMPQRTTVS 105

Query: 316 NQHTFSSCL---CACASIVSL----------KHGKQVHGFLIRTNFR------------- 349
           N    S+ +   C       L           +   + GF+    F              
Sbjct: 106 NNAMISAYIRNGCNVGKAYELFSVLAERNLVSYAAMIMGFVKAGKFHMAEKLYRETPYEF 165

Query: 350 SNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHD 409
            +    ++LI+ Y K G +N+  ++F+    ++  + W+ M+  L + G    A  LF  
Sbjct: 166 RDPACSNALINGYLKMGEVNEALRIFENMGERD-VVSWSAMVDGLCRDGRVAAARDLFDR 224

Query: 410 MVRSSVKPDK--ITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQ 467
           M      PD+  ++ + +++     G  QEG   F  M  +  +  N      + +    
Sbjct: 225 M------PDRNVVSWSAMIDGYMGEGFFQEGFCLFMDMKREGLVEVNSTTMTIMFKACGN 278

Query: 468 AGCSD---QLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQN 517
            G      Q+   + ++ +E D+ L N++  +  + G  DM  KV   + D++
Sbjct: 279 CGRMSEGMQIHGLVSRLGFEFDNVLSNSVITMYSMLGCTDMADKVFCTVSDKD 331


>gi|147799543|emb|CAN68467.1| hypothetical protein VITISV_029899 [Vitis vinifera]
          Length = 613

 Score =  293 bits (750), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 151/431 (35%), Positives = 248/431 (57%), Gaps = 17/431 (3%)

Query: 135 MKHARNLFDNMAERDVVSWNTMIIGYAKSG-AVEEGLKFYKVLRRFSISCNEFSFAGILT 193
           + +AR +F +M   +  S+NT+I   ++S    +  L F +++   S+  N F+F  +  
Sbjct: 38  LDYARKIFRSMHRPNCFSYNTLIRALSESNDPCDALLVFIEMVEDCSVEPNCFTFPSVFK 97

Query: 194 ICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLF------DETD 247
            C + E L+  RQVHG  +  G  S+  + S++V  Y  CG + DA RLF      D  D
Sbjct: 98  ACGRAERLREGRQVHGLAVKFGLDSDEFVVSNVVRMYLSCGVMEDAHRLFYRRVFVDGCD 157

Query: 248 A---------RDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLG 298
                      DV+ W  M+ GY ++G++E A  LF+EMP+++ VSW  +IAGY ++G  
Sbjct: 158 GIRDKKRRVDGDVVLWNVMIDGYVRIGELEVARNLFDEMPQRSVVSWNVMIAGYAQSGHF 217

Query: 299 QKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSL 358
           ++A+E+F  M +  + PN  T  S L A + + +L+ GK VH + +R N   + ++ S+L
Sbjct: 218 KEAVEVFREMQMAEVPPNYVTLVSVLPAMSRLGALELGKWVHLYAVRNNIGVDDVLGSAL 277

Query: 359 IDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPD 418
           IDMY+KCG +    QVF+    K N + W+T+I+ L  HG  +  +  F DM R+ V P 
Sbjct: 278 IDMYAKCGSIEKALQVFEGLP-KRNVVTWSTIIAGLAMHGRAKDTLDHFEDMERAGVMPS 336

Query: 419 KITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQL 478
            +T   +L+AC+H+GLV EG  +F+ M    G+ P  EH+ C+++LL +AG  ++    +
Sbjct: 337 DVTYIGLLSACSHAGLVNEGRWFFDHMVRVSGLEPRIEHYGCMVDLLGRAGLLEESEELI 396

Query: 479 EKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGR 538
             MP + D  +W AL G C++HGN++MG++V + L++  P  S ++  LS+IY++LG   
Sbjct: 397 LNMPIKPDDVIWKALLGACKMHGNVEMGKRVAEHLMELAPHDSGSYVALSNIYASLGNWE 456

Query: 539 LVEKVRQLINE 549
            V KVR ++ E
Sbjct: 457 GVAKVRLMMKE 467



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 91/369 (24%), Positives = 167/369 (45%), Gaps = 48/369 (13%)

Query: 54  TLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVF-- 111
           T   + + C  ++ L+ G++VH  L +        F+ ++++ MY  CG   DA ++F  
Sbjct: 91  TFPSVFKACGRAERLREGRQVH-GLAVKFGLDSDEFVVSNVVRMYLSCGVMEDAHRLFYR 149

Query: 112 -------DKIPVK------NLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMII 158
                  D I  K      ++  +N M+ GY  +G ++ ARNLFD M +R VVSWN MI 
Sbjct: 150 RVFVDGCDGIRDKKRRVDGDVVLWNVMIDGYVRIGELEVARNLFDEMPQRSVVSWNVMIA 209

Query: 159 GYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLS 218
           GYA+SG  +E ++ ++ ++   +  N  +   +L    +L  L+L + VH   +      
Sbjct: 210 GYAQSGHFKEAVEVFREMQMAEVPPNYVTLVSVLPAMSRLGALELGKWVHLYAVRNNIGV 269

Query: 219 NVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMP 278
           + V+ S+++D YAKCG +  A ++F+    R+V+TW+T                      
Sbjct: 270 DDVLGSALIDMYAKCGSIEKALQVFEGLPKRNVVTWST---------------------- 307

Query: 279 EKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQ 338
                    +IAG   +G  +  L+ F  M    + P+  T+   L AC+    +  G+ 
Sbjct: 308 ---------IIAGLAMHGRAKDTLDHFEDMERAGVMPSDVTYIGLLSACSHAGLVNEGRW 358

Query: 339 VHGFLIRTNFRSNTIV-MSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQH 397
               ++R +     I     ++D+  + G L +  ++      K + ++W  ++ A   H
Sbjct: 359 FFDHMVRVSGLEPRIEHYGCMVDLLGRAGLLEESEELILNMPIKPDDVIWKALLGACKMH 418

Query: 398 GYDEQAIRL 406
           G  E   R+
Sbjct: 419 GNVEMGKRV 427



 Score = 92.4 bits (228), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 77/327 (23%), Positives = 140/327 (42%), Gaps = 60/327 (18%)

Query: 266 DMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMM-ILRIRPNQHTFSSCL 324
           D++ A K+F  M   N  S+ TLI   + +     AL +F  M+    + PN  TF S  
Sbjct: 37  DLDYARKIFRSMHRPNCFSYNTLIRALSESNDPCDALLVFIEMVEDCSVEPNCFTFPSVF 96

Query: 325 CACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVF--------- 375
            AC     L+ G+QVHG  ++    S+  V+S+++ MY  CG + D  ++F         
Sbjct: 97  KACGRAERLREGRQVHGLAVKFGLDSDEFVVSNVVRMYLSCGVMEDAHRLFYRRVFVDGC 156

Query: 376 -DLTDNKE---------NSML--------------------------WNTMISALTQHGY 399
             + D K          N M+                          WN MI+   Q G+
Sbjct: 157 DGIRDKKRRVDGDVVLWNVMIDGYVRIGELEVARNLFDEMPQRSVVSWNVMIAGYAQSGH 216

Query: 400 DEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEG-LTYFESMTHDLGIIPNQEHH 458
            ++A+ +F +M  + V P+ +TL  +L A +  G ++ G   +  ++ +++G+  +    
Sbjct: 217 FKEAVEVFREMQMAEVPPNYVTLVSVLPAMSRLGALELGKWVHLYAVRNNIGV--DDVLG 274

Query: 459 ACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQN- 517
           + LI++ A+ G  ++ +   E +P + +   W+ +     +HG     +  +D   D   
Sbjct: 275 SALIDMYAKCGSIEKALQVFEGLP-KRNVVTWSTIIAGLAMHGR---AKDTLDHFEDMER 330

Query: 518 ----PQSSATHGLLSSIYSA--LGKGR 538
               P      GLLS+   A  + +GR
Sbjct: 331 AGVMPSDVTYIGLLSACSHAGLVNEGR 357


>gi|224082560|ref|XP_002306741.1| predicted protein [Populus trichocarpa]
 gi|222856190|gb|EEE93737.1| predicted protein [Populus trichocarpa]
          Length = 509

 Score =  293 bits (750), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 147/466 (31%), Positives = 262/466 (56%), Gaps = 3/466 (0%)

Query: 133 GMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFY--KVLRRFSISCNEFSFAG 190
           G + +A  +F  +   ++  WNT+I G+++S      +  +   +    +      ++  
Sbjct: 43  GDINYAYLVFTQIRNPNLFVWNTIIRGFSQSSTPHNAISLFIDMMFTSPTTQPQRLTYPS 102

Query: 191 ILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARD 250
           +     +L       Q+HG+V+  G  ++  I ++I++ Y  CG L +A+R+FD     D
Sbjct: 103 VFKAYAQLGLAHEGAQLHGRVIKLGLENDQFIQNTILNMYVNCGFLGEAQRIFDGATGFD 162

Query: 251 VLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMI 310
           V+TW TM+ G AK G+++ + +LF++M  +N VSW ++I+GY R G   +A+ELF+RM  
Sbjct: 163 VVTWNTMIIGLAKCGEIDKSRRLFDKMLLRNTVSWNSMISGYVRKGRFFEAMELFSRMQE 222

Query: 311 LRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLND 370
             I+P++ T  S L ACA + +L+ G+ +H ++++ NF  N+IV++++IDMYSKCG ++ 
Sbjct: 223 EGIKPSEFTMVSLLNACACLGALRQGEWIHDYIVKNNFALNSIVITAIIDMYSKCGSIDK 282

Query: 371 GRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACT 430
             QVF     K  S  WN++I  L   G   +A+RLF  +  S++KPD ++   +L AC 
Sbjct: 283 ALQVFKSAPKKGLS-CWNSLILGLAMSGRGNEAVRLFSKLESSNLKPDHVSFIGVLTACN 341

Query: 431 HSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLW 490
           H+G+V     YF  M+    I P+ +H++C++++L +AG  ++    ++ MP   D+ +W
Sbjct: 342 HAGMVDRAKDYFLLMSETYKIEPSIKHYSCMVDVLGRAGLLEEAEELIKSMPVNPDAIIW 401

Query: 491 NALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINER 550
            +L   CR +GNI+M ++   ++ + +P  S++  LLS++Y+A        + R  + E+
Sbjct: 402 GSLLSSCREYGNIEMAKQAAKRVNELDPNESSSFILLSNVYAAHNHFEEAIEQRLSLKEK 461

Query: 551 QFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQMGE 596
           Q  KE   S IE+  +VH F     LHP    +Y  L+ L   + E
Sbjct: 462 QMDKEPGCSLIEVNGEVHEFVAGGRLHPRSKDIYHALDDLGLTLKE 507



 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 72/317 (22%), Positives = 149/317 (47%), Gaps = 34/317 (10%)

Query: 89  FLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAER 148
           F+ N +++MY  CG   +A+++FD     ++ ++N M+ G A  G +  +R LFD M  R
Sbjct: 133 FIQNTILNMYVNCGFLGEAQRIFDGATGFDVVTWNTMIIGLAKCGEIDKSRRLFDKMLLR 192

Query: 149 DVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVH 208
           + VSWN+MI GY + G   E ++ +  ++   I  +EF+   +L  C  L  L+    +H
Sbjct: 193 NTVSWNSMISGYVRKGRFFEAMELFSRMQEEGIKPSEFTMVSLLNACACLGALRQGEWIH 252

Query: 209 GQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDME 268
             ++   F  N ++ ++I+D Y+KCG +  A ++F     + +  W +++ G A      
Sbjct: 253 DYIVKNNFALNSIVITAIIDMYSKCGSIDKALQVFKSAPKKGLSCWNSLILGLA------ 306

Query: 269 SASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACA 328
                                     +G G +A+ LF+++    ++P+  +F   L AC 
Sbjct: 307 -------------------------MSGRGNEAVRLFSKLESSNLKPDHVSFIGVLTACN 341

Query: 329 SIVSLKHGKQVHGFLIRTNFRSNTIV--MSSLIDMYSKCGCLNDGRQVFDLTDNKENSML 386
               +   K  +  L+   ++    +   S ++D+  + G L +  ++        ++++
Sbjct: 342 HAGMVDRAKD-YFLLMSETYKIEPSIKHYSCMVDVLGRAGLLEEAEELIKSMPVNPDAII 400

Query: 387 WNTMISALTQHGYDEQA 403
           W +++S+  ++G  E A
Sbjct: 401 WGSLLSSCREYGNIEMA 417



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 66/300 (22%), Positives = 120/300 (40%), Gaps = 46/300 (15%)

Query: 12  RKNLPNNCLIQSFLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLG 71
           R  +  N +I  +   + KG+  EA+     + + GI+    T+  +L  CA   +L+ G
Sbjct: 192 RNTVSWNSMISGY---VRKGRFFEAMELFSRMQEEGIKPSEFTMVSLLNACACLGALRQG 248

Query: 72  KRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYAN 131
           + +H ++ +       + +   +I MY KCGS   A +VF   P K L  +N        
Sbjct: 249 EWIHDYI-VKNNFALNSIVITAIIDMYSKCGSIDKALQVFKSAPKKGLSCWN-------- 299

Query: 132 LGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGI 191
                                  ++I+G A SG   E ++ +  L   ++  +  SF G+
Sbjct: 300 -----------------------SLILGLAMSGRGNEAVRLFSKLESSNLKPDHVSFIGV 336

Query: 192 LTICVKLEELKLTRQVHGQVLVTGFLSNVVIS----SSIVDAYAKCGELSDARRLFDETD 247
           LT C       +  +     L+      +  S    S +VD   + G L +A  L     
Sbjct: 337 LTAC---NHAGMVDRAKDYFLLMSETYKIEPSIKHYSCMVDVLGRAGLLEEAEELIKSMP 393

Query: 248 AR-DVLTWTTMVSGYAKLGDME---SASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALE 303
              D + W +++S   + G++E    A+K  NE+      S+  L   Y  +   ++A+E
Sbjct: 394 VNPDAIIWGSLLSSCREYGNIEMAKQAAKRVNELDPNESSSFILLSNVYAAHNHFEEAIE 453


>gi|357478575|ref|XP_003609573.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355510628|gb|AES91770.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 665

 Score =  293 bits (750), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 169/528 (32%), Positives = 289/528 (54%), Gaps = 7/528 (1%)

Query: 59  LQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKN 118
           +  CA +  ++ G ++H  L +      +  ++N LI MY KC +  DARKVFD++   N
Sbjct: 79  INSCAGASDIRFGTKLH-SLVVVSGYQSSLPVANALIDMYGKCFNPNDARKVFDEMNYSN 137

Query: 119 LFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRR 178
             ++ ++L  YAN      A  +F +M E+  ++WN +I  +A+ G VE  L  +K +  
Sbjct: 138 EVTWCSLLFAYANTCRFDMAFEIFRSMPEKVEIAWNIIIAAHARCGEVEACLHLFKEMCE 197

Query: 179 FSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSD 238
                ++++F+ +++ C +  E      +H  V+ +G+ + + +++SIV  YAK     D
Sbjct: 198 NLYQPDQWTFSALMSACTESMESLHGCMMHCFVIKSGWSTAMEVNNSIVSFYAKLECHGD 257

Query: 239 ARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLG 298
           A ++F+   A + ++W  ++  + K+GD + A   F + PEKN VSWT++I GYTRNG G
Sbjct: 258 AVKVFNSGGAFNQVSWNAIIDAHMKVGDTQKALLAFQQAPEKNIVSWTSMIVGYTRNGNG 317

Query: 299 QKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSL 358
             AL LF  M     + +     + L ACAS+  L HGK VH  +I         V +SL
Sbjct: 318 DLALSLFLDMKRNSFQLDDLVAGAVLHACASLAILVHGKMVHSCIIHLGLDKYLFVGNSL 377

Query: 359 IDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPD 418
           I+MY+KCG + +G ++     N ++ + WN+M+ A   +G   +AI +F +MV S V+PD
Sbjct: 378 INMYAKCGDI-EGSKLALRGINDKDLVSWNSMLFAFGLNGRGNEAICMFREMVASGVRPD 436

Query: 419 KITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGC---SDQLM 475
           ++T   +L  C+H GL+ EG  +F+SM+ + G++   +H AC++++L + G    +  L 
Sbjct: 437 EVTFTGLLMTCSHLGLIDEGFAFFQSMSLEYGLVQGMDHVACMVDMLGRGGYVAEAQSLA 496

Query: 476 NQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALG 535
            +  K   +  +     L G C  HG++  G  V + + +  P+    + LLS++Y A G
Sbjct: 497 RKYSKTSRDKTNSC-EVLLGACHAHGDLGTGSSVGEYVKNLEPKKEVGYVLLSNMYCASG 555

Query: 536 KGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHP-MRDV 582
           K +  E VR+ + ++  KK    SWIEI N V AF   ++L+P M D+
Sbjct: 556 KWKEAEMVRKEMMDQGVKKVPGCSWIEIRNVVTAFVSGNNLYPCMADI 603



 Score =  183 bits (464), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 105/371 (28%), Positives = 188/371 (50%), Gaps = 32/371 (8%)

Query: 130 ANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSIS-CNEFSF 188
           A  G + HAR LFD M ERD V+WN M+  Y++ G  ++    +  +RR S S  + FS+
Sbjct: 16  ARSGRICHARKLFDEMPERDTVAWNAMLTAYSRLGLYQQTFDLFDSMRRISDSKPDNFSY 75

Query: 189 AGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDA 248
           +  +  C    +++   ++H  V+V+G+ S++ ++++++D Y KC   +DAR++FDE + 
Sbjct: 76  SAAINSCAGASDIRFGTKLHSLVVVSGYQSSLPVANALIDMYGKCFNPNDARKVFDEMNY 135

Query: 249 RDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRM 308
            + +TW +++  YA     + A ++F  MPEK  ++W  +IA + R G  +  L LF  M
Sbjct: 136 SNEVTWCSLLFAYANTCRFDMAFEIFRSMPEKVEIAWNIIIAAHARCGEVEACLHLFKEM 195

Query: 309 MILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCL 368
                +P+Q TFS+ + AC   +   HG  +H F+I++ + +   V +S++  Y+K  C 
Sbjct: 196 CENLYQPDQWTFSALMSACTESMESLHGCMMHCFVIKSGWSTAMEVNNSIVSFYAKLECH 255

Query: 369 NDGRQVFD-------------------LTDNK-----------ENSMLWNTMISALTQHG 398
            D  +VF+                   + D +           +N + W +MI   T++G
Sbjct: 256 GDAVKVFNSGGAFNQVSWNAIIDAHMKVGDTQKALLAFQQAPEKNIVSWTSMIVGYTRNG 315

Query: 399 YDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHH 458
             + A+ LF DM R+S + D +    +L+AC    ++  G      + H LG+       
Sbjct: 316 NGDLALSLFLDMKRNSFQLDDLVAGAVLHACASLAILVHGKMVHSCIIH-LGLDKYLFVG 374

Query: 459 ACLIELLAQAG 469
             LI + A+ G
Sbjct: 375 NSLINMYAKCG 385



 Score =  107 bits (268), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 59/209 (28%), Positives = 106/209 (50%), Gaps = 31/209 (14%)

Query: 255 TTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRM-MILRI 313
           T+ +   A+ G +  A KLF+EMPE++ V+W  ++  Y+R GL Q+  +LF  M  I   
Sbjct: 9   TSEIVSLARSGRICHARKLFDEMPERDTVAWNAMLTAYSRLGLYQQTFDLFDSMRRISDS 68

Query: 314 RPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQ 373
           +P+  ++S+ + +CA    ++ G ++H  ++ + ++S+  V ++LIDMY KC   ND R+
Sbjct: 69  KPDNFSYSAAINSCAGASDIRFGTKLHSLVVVSGYQSSLPVANALIDMYGKCFNPNDARK 128

Query: 374 VFDLTDNKEN------------------------------SMLWNTMISALTQHGYDEQA 403
           VFD  +                                   + WN +I+A  + G  E  
Sbjct: 129 VFDEMNYSNEVTWCSLLFAYANTCRFDMAFEIFRSMPEKVEIAWNIIIAAHARCGEVEAC 188

Query: 404 IRLFHDMVRSSVKPDKITLAVILNACTHS 432
           + LF +M  +  +PD+ T + +++ACT S
Sbjct: 189 LHLFKEMCENLYQPDQWTFSALMSACTES 217


>gi|147865382|emb|CAN79811.1| hypothetical protein VITISV_018821 [Vitis vinifera]
          Length = 871

 Score =  293 bits (750), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 172/564 (30%), Positives = 286/564 (50%), Gaps = 57/564 (10%)

Query: 47  GIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVD 106
           GIR  A +L  +L  CA   +   GK+VH +  L        F+ N ++ MY KC     
Sbjct: 245 GIRPDAVSLVNVLPACASVGAWSRGKQVHGY-ALRSGLFEDVFVGNAVVDMYAKC----- 298

Query: 107 ARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAV 166
                                     GMM+ A  +F+ M  +DVVSWN M+ GY++ G  
Sbjct: 299 --------------------------GMMEEANKVFERMKVKDVVSWNAMVTGYSQIGRF 332

Query: 167 EEGLKFYKVLRRFSISCNEFSF----AGILTICVKLEELKLTRQVHGQVLVTGFLSNVVI 222
           ++ L  ++ +R   I  N  ++    AG     +  E L + RQ+    L+ G   NVV 
Sbjct: 333 DDALGLFEKIREEKIELNVVTWSAVIAGYAQRGLGFEALDVFRQM----LLCGSEPNVVT 388

Query: 223 SSSIVDAYAKCGELSDARRL----------FDETD-ARDVLTWTTMVSGYAKLGDMESAS 271
             S++   A  G L   +             DE D   D++    ++  Y+K    ++A 
Sbjct: 389 LVSLLSGCASAGTLLHGKETHCHAIKWILNLDENDPGDDLMVINALIDMYSKCKSPKAAR 448

Query: 272 KLFNEMPEKNP--VSWTTLIAGYTRNGLGQKALELFTRMMILR--IRPNQHTFSSCLCAC 327
            +F+ +P K+   V+WT LI G  ++G   +ALELF++M+     + PN  T S  L AC
Sbjct: 449 AMFDLIPPKDRSVVTWTVLIGGNAQHGEANEALELFSQMLQPDNFVMPNAFTISCALMAC 508

Query: 328 ASIVSLKHGKQVHGFLIRTNFRSNTI-VMSSLIDMYSKCGCLNDGRQVFDLTDNKENSML 386
           A + +L+ G+Q+H +++R  F S  + V + LIDMYSK G ++  R VFD   ++ N + 
Sbjct: 509 ARLGALRFGRQIHAYVLRNRFESAMLFVANCLIDMYSKSGDVDAARVVFD-NMHQRNGVS 567

Query: 387 WNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMT 446
           W ++++    HG  E+A+++F++M +  + PD +T  V+L AC+HSG+V +G+ YF  M 
Sbjct: 568 WTSLMTGYGMHGRGEEALQIFYEMQKVXLVPDGVTFVVVLYACSHSGMVDQGINYFNGMN 627

Query: 447 HDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMG 506
            D G++P  EH+AC+++LL++AG  D+ M  +  MP +    +W AL   CR++ N+++G
Sbjct: 628 KDFGVVPGAEHYACMVDLLSRAGRLDEAMELIRGMPMKPTPAVWVALLSACRVYANVELG 687

Query: 507 RKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENK 566
               +QL++    +  ++ LLS+IY+     + V ++R L+     KK    SW++    
Sbjct: 688 EYAANQLLELESGNDGSYTLLSNIYANARCWKDVARIRYLMKNTGIKKRPGCSWVQGRKG 747

Query: 567 VHAFSVSDSLHPMRDVLYSVLEQL 590
              F   D  HPM   +Y +L  L
Sbjct: 748 TATFFAGDWSHPMSQQIYDLLRDL 771



 Score =  218 bits (556), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 136/427 (31%), Positives = 223/427 (52%), Gaps = 32/427 (7%)

Query: 99  FKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAER---DVVSWNT 155
           F+CG+ V A  VF      N+F  N ++S Y   G  ++AR +FD M ER   D+VSWN+
Sbjct: 161 FRCGASVHA-VVFASGFEWNVFVGNGLVSMYGRCGAWENARQVFDEMRERGVGDLVSWNS 219

Query: 156 MIIGYAKSGAVEEGLK-FYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVT 214
           ++  Y + G     +K F ++     I  +  S   +L  C  +      +QVHG  L +
Sbjct: 220 IVAAYMQGGDSIRAMKMFERMTEDLGIRPDAVSLVNVLPACASVGAWSRGKQVHGYALRS 279

Query: 215 GFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLF 274
           G   +V + +++VD YAKCG + +A ++F+    +DV++W  MV+GY+++G  + A  LF
Sbjct: 280 GLFEDVFVGNAVVDMYAKCGMMEEANKVFERMKVKDVVSWNAMVTGYSQIGRFDDALGLF 339

Query: 275 NEMPEK----NPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASI 330
            ++ E+    N V+W+ +IAGY + GLG +AL++F +M++    PN  T  S L  CAS 
Sbjct: 340 EKIREEKIELNVVTWSAVIAGYAQRGLGFEALDVFRQMLLCGSEPNVVTLVSLLSGCASA 399

Query: 331 VSLKHGKQVHGFLIR--TNFRSNT-----IVMSSLIDMYSKCGCLNDGRQVFDLTDNKEN 383
            +L HGK+ H   I+   N   N      +V+++LIDMYSKC      R +FDL   K+ 
Sbjct: 400 GTLLHGKETHCHAIKWILNLDENDPGDDLMVINALIDMYSKCKSPKAARAMFDLIPPKDR 459

Query: 384 SML-WNTMISALTQHGYDEQAIRLFHDMVRSS--VKPDKITLAVILNACTHSGLVQEGLT 440
           S++ W  +I    QHG   +A+ LF  M++    V P+  T++  L AC   G ++    
Sbjct: 460 SVVTWTVLIGGNAQHGEANEALELFSQMLQPDNFVMPNAFTISCALMACARLGALR---- 515

Query: 441 YFESMTHDLGIIPNQEHHA------CLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALH 494
            F    H   ++ N+   A      CLI++ +++G  D      + M ++ +   W +L 
Sbjct: 516 -FGRQIHAY-VLRNRFESAMLFVANCLIDMYSKSGDVDAARVVFDNM-HQRNGVSWTSLM 572

Query: 495 GVCRIHG 501
               +HG
Sbjct: 573 TGYGMHG 579



 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 102/411 (24%), Positives = 182/411 (44%), Gaps = 49/411 (11%)

Query: 76  LHLKLTQRKTPTTFLSNHLIS-----------MYFKCGSDVDARKVFDKIPVKNL-FSYN 123
           + L   + K P  FL+    S           ++ +C S   A     ++ V+ L     
Sbjct: 22  ISLPRLKPKPPLLFLTTFFFSTASSTTDLTSTLFHQCKSLASAELTHQQLLVQGLPHDPT 81

Query: 124 NMLSGYANLGMMKHARNLFDNM--AERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSI 181
           +++S Y        A ++   +  +   V  WN +I      G +E+ L+ Y+ ++R   
Sbjct: 82  HIISMYLTFNSPAKALSVLRRLHPSSHTVFWWNQLIRRSVHLGFLEDVLQLYRRMQRLGW 141

Query: 182 SCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARR 241
             + ++F  +L  C ++   +    VH  V  +GF  NV + + +V  Y +CG   +AR+
Sbjct: 142 RPDHYTFPFVLKACGEIPSFRCGASVHAVVFASGFEWNVFVGNGLVSMYGRCGAWENARQ 201

Query: 242 LFDETDAR---DVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLG 298
           +FDE   R   D+++W ++V+ Y + GD   A K+F  M E                   
Sbjct: 202 VFDEMRERGVGDLVSWNSIVAAYMQGGDSIRAMKMFERMTED------------------ 243

Query: 299 QKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSL 358
                       L IRP+  +  + L ACAS+ +   GKQVHG+ +R+    +  V +++
Sbjct: 244 ------------LGIRPDAVSLVNVLPACASVGAWSRGKQVHGYALRSGLFEDVFVGNAV 291

Query: 359 IDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPD 418
           +DMY+KCG + +  +VF+    K+  + WN M++  +Q G  + A+ LF  +    ++ +
Sbjct: 292 VDMYAKCGMMEEANKVFERMKVKD-VVSWNAMVTGYSQIGRFDDALGLFEKIREEKIELN 350

Query: 419 KITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAG 469
            +T + ++      GL  E L  F  M    G  PN      L+   A AG
Sbjct: 351 VVTWSAVIAGYAQRGLGFEALDVFRQMLL-CGSEPNVVTLVSLLSGCASAG 400



 Score = 99.4 bits (246), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 60/212 (28%), Positives = 98/212 (46%), Gaps = 5/212 (2%)

Query: 285 WTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLI 344
           W  LI      G  +  L+L+ RM  L  RP+ +TF   L AC  I S + G  VH  + 
Sbjct: 113 WNQLIRRSVHLGFLEDVLQLYRRMQRLGWRPDHYTFPFVLKACGEIPSFRCGASVHAVVF 172

Query: 345 RTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSML--WNTMISALTQHGYDEQ 402
            + F  N  V + L+ MY +CG   + RQVFD    +    L  WN++++A  Q G   +
Sbjct: 173 ASGFEWNVFVGNGLVSMYGRCGAWENARQVFDEMRERGVGDLVSWNSIVAAYMQGGDSIR 232

Query: 403 AIRLFHDMVRS-SVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACL 461
           A+++F  M     ++PD ++L  +L AC   G    G           G+  +      +
Sbjct: 233 AMKMFERMTEDLGIRPDAVSLVNVLPACASVGAWSRG-KQVHGYALRSGLFEDVFVGNAV 291

Query: 462 IELLAQAGCSDQLMNQLEKMPYEHDSYLWNAL 493
           +++ A+ G  ++     E+M  + D   WNA+
Sbjct: 292 VDMYAKCGMMEEANKVFERMKVK-DVVSWNAM 322


>gi|296085026|emb|CBI28441.3| unnamed protein product [Vitis vinifera]
          Length = 913

 Score =  293 bits (749), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 175/571 (30%), Positives = 301/571 (52%), Gaps = 47/571 (8%)

Query: 35  EAISSLDLLAQRGIRLPAETLAFILQ---QCAESKSLKLGKR----VHLHLKLTQRKTPT 87
           +A+S+ DL +     +  E L F  +     +E   L+ G+R    VH H+  T      
Sbjct: 284 DAVSAYDLFSS----MQKEGLGFSFKPNDAFSEFSVLEEGRRKGREVHAHVIRTGLNDNK 339

Query: 88  TFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAE 147
             + N L++MY K G+  DA  VF+ +  K+  S+N+++SG       + A  +F  M E
Sbjct: 340 VAIGNGLVNMYAKSGAIADACSVFELMVEKDSVSWNSLISGLDQNECSEDAAEMFSLMPE 399

Query: 148 RDVVSWNTMIIGYAKSGA-VEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQ 206
            D VSWN++I   + S A V + +K++  + R     +  +F  IL+    L   +++ Q
Sbjct: 400 YDQVSWNSVIGALSDSEASVSQAVKYFLQMMRGGWGLSRVTFINILSAVSSLSLHEVSHQ 459

Query: 207 VHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDE-TDARDVLTWTTMVSGYAKLG 265
           +H  VL      +  I ++++  Y KCGE+++  ++F   ++ RD ++W +M+S      
Sbjct: 460 IHALVLKYCLSDDTAIGNALLSCYGKCGEMNECEKIFARMSETRDEVSWNSMIS------ 513

Query: 266 DMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLC 325
                                    GY  N L  KA++L   MM    R +  TF++ L 
Sbjct: 514 -------------------------GYIHNELLHKAMDLVWFMMQKGQRLDSFTFATILS 548

Query: 326 ACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSM 385
           ACAS+ +L+ G +VH   IR    S+ +V S+L+DMYSKCG ++   + F+L   + N  
Sbjct: 549 ACASVATLERGMEVHACGIRACLESDVVVGSALVDMYSKCGRIDYASRFFELMPLR-NVY 607

Query: 386 LWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESM 445
            WN+MIS   +HG+ E+A++LF  M+     PD +T   +L+AC+H G V+EG  +F+SM
Sbjct: 608 SWNSMISGYARHGHGEKALKLFTRMMLDGQPPDHVTFVGVLSACSHVGFVEEGFEHFKSM 667

Query: 446 THDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGV-CRIHG-NI 503
           +    + P  EH +C+++LL +AG  D++ + +  MP + +  +W  + G  CR +G N 
Sbjct: 668 SEVYRLSPRVEHFSCMVDLLGRAGKLDEVGDFINSMPMKPNVLIWRTVLGACCRANGRNT 727

Query: 504 DMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEI 563
           ++GR+  + L++  PQ++  + LL+++Y++  K   V K R  + E   KKE   SW+ +
Sbjct: 728 ELGRRAAEMLLELEPQNAVNYVLLANMYASGEKWEDVAKARTAMKEAAVKKEAGCSWVTM 787

Query: 564 ENKVHAFSVSDSLHPMRDVLYSVLEQLAGQM 594
           ++ VH F   D LHP +D++Y  L +L  +M
Sbjct: 788 KDGVHVFVAGDKLHPEKDLIYDKLRELNRKM 818



 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 133/534 (24%), Positives = 238/534 (44%), Gaps = 60/534 (11%)

Query: 11  NRKNLPNNCLIQSFLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAES--KSL 68
           NR  +   CLI  +      G+  EA +    + + G           L+ C ES     
Sbjct: 162 NRNLVTWACLISGY---TQNGKPDEACARFRDMVRAGFIPNHYAFGSALRACQESGPSGC 218

Query: 69  KLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSG 128
           KLG ++H  +  T R      + N LISMY  C                           
Sbjct: 219 KLGVQIHGLISKT-RYGSDVVVCNVLISMYGSC--------------------------- 250

Query: 129 YANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRR----FSISCN 184
              L     AR++FD +  R+ +SWN++I  Y++ G        +  +++    FS   N
Sbjct: 251 ---LDSANDARSVFDGIGIRNSISWNSIISVYSRRGDAVSAYDLFSSMQKEGLGFSFKPN 307

Query: 185 E-FSFAGILTICVKLEELKLTRQVHGQVLVTGFLSN-VVISSSIVDAYAKCGELSDARRL 242
           + FS   +L      E  +  R+VH  V+ TG   N V I + +V+ YAK G ++DA  +
Sbjct: 308 DAFSEFSVLE-----EGRRKGREVHAHVIRTGLNDNKVAIGNGLVNMYAKSGAIADACSV 362

Query: 243 FDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLG-QKA 301
           F+    +D ++W +++SG  +    E A+++F+ MPE + VSW ++I   + +     +A
Sbjct: 363 FELMVEKDSVSWNSLISGLDQNECSEDAAEMFSLMPEYDQVSWNSVIGALSDSEASVSQA 422

Query: 302 LELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDM 361
           ++ F +MM      ++ TF + L A +S+   +   Q+H  +++     +T + ++L+  
Sbjct: 423 VKYFLQMMRGGWGLSRVTFINILSAVSSLSLHEVSHQIHALVLKYCLSDDTAIGNALLSC 482

Query: 362 YSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKIT 421
           Y KCG +N+  ++F       + + WN+MIS    +    +A+ L   M++   + D  T
Sbjct: 483 YGKCGEMNECEKIFARMSETRDEVSWNSMISGYIHNELLHKAMDLVWFMMQKGQRLDSFT 542

Query: 422 LAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHH----ACLIELLAQAGCSDQLMNQ 477
            A IL+AC     ++ G+       H  GI    E      + L+++ ++ G  D     
Sbjct: 543 FATILSACASVATLERGME-----VHACGIRACLESDVVVGSALVDMYSKCGRIDYASRF 597

Query: 478 LEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQ-LIDQNPQSSATH-GLLSS 529
            E MP   + Y WN++      HG+ +   K+  + ++D  P    T  G+LS+
Sbjct: 598 FELMPLR-NVYSWNSMISGYARHGHGEKALKLFTRMMLDGQPPDHVTFVGVLSA 650



 Score =  132 bits (332), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 91/335 (27%), Positives = 162/335 (48%), Gaps = 41/335 (12%)

Query: 116 VKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKV 175
           V NLF  N +++ Y  +G +  A+ LFD M+ R++V+W  +I GY ++G  +E    ++ 
Sbjct: 131 VGNLFLSNTLINIYVRIGDLGSAQKLFDEMSNRNLVTWACLISGYTQNGKPDEACARFRD 190

Query: 176 LRRFSISCNEFSFAGILTICVK--LEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKC 233
           + R     N ++F   L  C +      KL  Q+HG +  T + S+VV+ + ++  Y  C
Sbjct: 191 MVRAGFIPNHYAFGSALRACQESGPSGCKLGVQIHGLISKTRYGSDVVVCNVLISMYGSC 250

Query: 234 -GELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGY 292
               +DAR +FD    R+ ++W +++S Y++ GD  SA  LF+ M ++            
Sbjct: 251 LDSANDARSVFDGIGIRNSISWNSIISVYSRRGDAVSAYDLFSSMQKEGL---------- 300

Query: 293 TRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNT 352
              G   K  + F+   +L                      + G++VH  +IRT    N 
Sbjct: 301 ---GFSFKPNDAFSEFSVLE------------------EGRRKGREVHAHVIRTGLNDNK 339

Query: 353 IVM-SSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMV 411
           + + + L++MY+K G + D   VF+L   K+ S+ WN++IS L Q+   E A  +F  M 
Sbjct: 340 VAIGNGLVNMYAKSGAIADACSVFELMVEKD-SVSWNSLISGLDQNECSEDAAEMFSLM- 397

Query: 412 RSSVKPDKITLAVILNACTHS-GLVQEGLTYFESM 445
               + D+++   ++ A + S   V + + YF  M
Sbjct: 398 ---PEYDQVSWNSVIGALSDSEASVSQAVKYFLQM 429



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 83/280 (29%), Positives = 127/280 (45%), Gaps = 46/280 (16%)

Query: 256 TMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRP 315
           T+++ Y ++GD+ SA KLF+EM  +N V+W  LI+GYT+NG   +A   F  M+     P
Sbjct: 139 TLINIYVRIGDLGSAQKLFDEMSNRNLVTWACLISGYTQNGKPDEACARFRDMVRAGFIP 198

Query: 316 NQHTFSSCLCAC--ASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKC-GCLNDGR 372
           N + F S L AC  +     K G Q+HG + +T + S+ +V + LI MY  C    ND R
Sbjct: 199 NHYAFGSALRACQESGPSGCKLGVQIHGLISKTRYGSDVVVCNVLISMYGSCLDSANDAR 258

Query: 373 QVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDM---------------------- 410
            VFD    + NS+ WN++IS  ++ G    A  LF  M                      
Sbjct: 259 SVFDGIGIR-NSISWNSIISVYSRRGDAVSAYDLFSSMQKEGLGFSFKPNDAFSEFSVLE 317

Query: 411 -------------VRSSVKPDKITLA-VILNACTHSGLVQEGLTYFESMTHDLGIIPNQE 456
                        +R+ +  +K+ +   ++N    SG + +  + FE M     +  N  
Sbjct: 318 EGRRKGREVHAHVIRTGLNDNKVAIGNGLVNMYAKSGAIADACSVFELMVEKDSVSWNS- 376

Query: 457 HHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGV 496
               LI  L Q  CS+        MP E+D   WN++ G 
Sbjct: 377 ----LISGLDQNECSEDAAEMFSLMP-EYDQVSWNSVIGA 411



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 31/100 (31%), Positives = 53/100 (53%), Gaps = 1/100 (1%)

Query: 334 KHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISA 393
           +  +++H   I+  F  N  + ++LI++Y + G L   +++FD   N+ N + W  +IS 
Sbjct: 116 EEARELHLQSIKYGFVGNLFLSNTLINIYVRIGDLGSAQKLFDEMSNR-NLVTWACLISG 174

Query: 394 LTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSG 433
            TQ+G  ++A   F DMVR+   P+       L AC  SG
Sbjct: 175 YTQNGKPDEACARFRDMVRAGFIPNHYAFGSALRACQESG 214


>gi|147801010|emb|CAN60118.1| hypothetical protein VITISV_016374 [Vitis vinifera]
          Length = 1166

 Score =  293 bits (749), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 145/469 (30%), Positives = 260/469 (55%), Gaps = 33/469 (7%)

Query: 123 NNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSIS 182
           N +++ Y  LGMM  A+ +   M + D V+WN +I G+A++    E +K YK++R   I 
Sbjct: 538 NALVTMYGKLGMMMEAKKVLQTMPQPDRVTWNALIGGHAENEEPNEAVKAYKLIREKGIP 597

Query: 183 CNEFSFAGILTICVKLEEL-KLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARR 241
            N  +   +L  C   ++L K    +H  +++TGF S+  + +S++  YAKC        
Sbjct: 598 ANYITMVSVLGACSAPDDLLKHGMPIHAHIVLTGFESDDYVKNSLITMYAKC-------- 649

Query: 242 LFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKA 301
                                  GD+ S++ +F+ +  K+P++W  ++A    +G G++A
Sbjct: 650 -----------------------GDLNSSNYIFDGLGNKSPITWNAMVAANAHHGCGEEA 686

Query: 302 LELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDM 361
           L++F  M  + +  +Q +FS  L A A++  L+ G+Q+HG +I+  F S+  V ++ +DM
Sbjct: 687 LKIFGEMRNVGVNLDQFSFSGGLAATANLAVLEEGQQLHGLVIKLGFESDLHVTNAAMDM 746

Query: 362 YSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKIT 421
           Y KCG ++D  ++     N+ + + WN +ISA  +HG  ++A   FH+M++   KPD +T
Sbjct: 747 YGKCGEMHDVLKMLPQPINR-SRLSWNILISAFARHGCFQKARETFHEMLKLGPKPDHVT 805

Query: 422 LAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKM 481
              +L+AC H GLV EGL Y++SMT + G+ P  EH  C+I+LL ++G        +++M
Sbjct: 806 FVSLLSACNHGGLVDEGLAYYDSMTREFGVFPGIEHCVCIIDLLGRSGRLSHAEGFIKEM 865

Query: 482 PYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVE 541
           P   +   W +L   CRIHGN+++ RK  + L++ +P   + + L S++ +  GK   VE
Sbjct: 866 PVPPNDLAWRSLLAACRIHGNLELARKTAEHLLELDPSDDSAYVLYSNVCATSGKWEDVE 925

Query: 542 KVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQL 590
            +R+ +     KK+ A SW+++++KVH+F + +  HP    + + L +L
Sbjct: 926 NLRKEMGSNNIKKQPACSWVKLKDKVHSFGMGEKYHPQASRISAKLGEL 974



 Score =  162 bits (409), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 116/421 (27%), Positives = 191/421 (45%), Gaps = 37/421 (8%)

Query: 123 NNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSIS 182
           N +L+ Y+  G  + A  +F  M ERD++SWN+M+  Y + G   +GLK    L +    
Sbjct: 437 NTLLTLYSEAGRSEDAELVFQAMTERDLISWNSMMACYVQDGKCLDGLKILAELLQMGKV 496

Query: 183 CNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRL 242
            N  +FA  L  C   E L  ++ VH  ++V GF   +++ +++V               
Sbjct: 497 MNHVTFASALAACSNPECLIESKIVHALIIVAGFHDFLIVGNALV--------------- 541

Query: 243 FDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKAL 302
                        TM   Y KLG M  A K+   MP+ + V+W  LI G+  N    +A+
Sbjct: 542 -------------TM---YGKLGMMMEAKKVLQTMPQPDRVTWNALIGGHAENEEPNEAV 585

Query: 303 ELFTRMMILRIRPNQHTFSSCLCACASIVS-LKHGKQVHGFLIRTNFRSNTIVMSSLIDM 361
           + +  +    I  N  T  S L AC++    LKHG  +H  ++ T F S+  V +SLI M
Sbjct: 586 KAYKLIREKGIPANYITMVSVLGACSAPDDLLKHGMPIHAHIVLTGFESDDYVKNSLITM 645

Query: 362 YSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKIT 421
           Y+KCG LN    +FD   NK + + WN M++A   HG  E+A+++F +M    V  D+ +
Sbjct: 646 YAKCGDLNSSNYIFDGLGNK-SPITWNAMVAANAHHGCGEEALKIFGEMRNVGVNLDQFS 704

Query: 422 LAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKM 481
            +  L A  +  +++EG      +   LG   +       +++  + G    ++  L + 
Sbjct: 705 FSGGLAATANLAVLEEG-QQLHGLVIKLGFESDLHVTNAAMDMYGKCGEMHDVLKMLPQ- 762

Query: 482 PYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVE 541
           P       WN L      HG     R+   +++   P+    H    S+ SA   G LV+
Sbjct: 763 PINRSRLSWNILISAFARHGCFQKARETFHEMLKLGPKPD--HVTFVSLLSACNHGGLVD 820

Query: 542 K 542
           +
Sbjct: 821 E 821



 Score =  147 bits (371), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 90/293 (30%), Positives = 144/293 (49%), Gaps = 33/293 (11%)

Query: 119 LFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRR 178
           +F  N +++ Y+  G ++HAR +FD M  R+  SW+TM+ GY + G  EE +  +  +  
Sbjct: 129 IFQTNTLINMYSKFGNIEHARYVFDEMRHRNEASWSTMLSGYVRVGLYEEAVGLFCQMWG 188

Query: 179 FSISCNEFSFAGILTICVKLEELKLTR-QVHGQVLVTGFLSNVVISSSIVDAYAKCGELS 237
             +  N F  A ++T C +   +     QVHG V+ TG L +V +               
Sbjct: 189 LGVEPNGFMVASLITACSRSGYMADEGFQVHGFVVKTGILGDVYVG-------------- 234

Query: 238 DARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGL 297
                            T +V  Y  +G + +A KLF EMP+ N VSWT+L+ GY+ +G 
Sbjct: 235 -----------------TALVHFYGSIGLVYNAQKLFEEMPDHNVVSWTSLMVGYSDSGN 277

Query: 298 GQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSS 357
             + L ++ RM    +  NQ+TF++   +C  +     G QV G +I+  F  +  V +S
Sbjct: 278 PGEVLNVYQRMRQEGVSGNQNTFATVTSSCGLLEDQVLGYQVLGHIIQYGFEDSVSVANS 337

Query: 358 LIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDM 410
           LI M+S    + +   VFD   N+ + + WN MISA   HG   +++R FH M
Sbjct: 338 LISMFSSFSSVEEACYVFDHM-NECDIISWNAMISAYAHHGLCRESLRCFHWM 389



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 95/371 (25%), Positives = 183/371 (49%), Gaps = 42/371 (11%)

Query: 129 YANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSF 188
           Y ++G++ +A+ LF+ M + +VVSW ++++GY+ SG   E L  Y+ +R+  +S N+ +F
Sbjct: 241 YGSIGLVYNAQKLFEEMPDHNVVSWTSLMVGYSDSGNPGEVLNVYQRMRQEGVSGNQNTF 300

Query: 189 AGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDA 248
           A + + C  LE+  L  QV G ++  GF  +V +++S++  ++    + +A  +FD  + 
Sbjct: 301 ATVTSSCGLLEDQVLGYQVLGHIIQYGFEDSVSVANSLISMFSSFSSVEEACYVFDHMNE 360

Query: 249 RDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRM 308
            D+++W  M+S YA                                +GL +++L  F  M
Sbjct: 361 CDIISWNAMISAYA-------------------------------HHGLCRESLRCFHWM 389

Query: 309 MILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCL 368
             L    N  T SS L  C+S+ +LK G+ +HG +++    SN  + ++L+ +YS+ G  
Sbjct: 390 RHLHNETNSTTLSSLLSVCSSVDNLKWGRGIHGLVVKLGLDSNVCICNTLLTLYSEAGRS 449

Query: 369 NDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNA 428
            D   VF     ++  + WN+M++   Q G     +++  ++++     + +T A  L A
Sbjct: 450 EDAELVFQAMTERD-LISWNSMMACYVQDGKCLDGLKILAELLQMGKVMNHVTFASALAA 508

Query: 429 CTHSG-LVQEGLTY---FESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYE 484
           C++   L++  + +     +  HD  I+ N      L+ +  + G   +    L+ MP +
Sbjct: 509 CSNPECLIESKIVHALIIVAGFHDFLIVGNA-----LVTMYGKLGMMMEAKKVLQTMP-Q 562

Query: 485 HDSYLWNALHG 495
            D   WNAL G
Sbjct: 563 PDRVTWNALIG 573



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 78/308 (25%), Positives = 146/308 (47%), Gaps = 32/308 (10%)

Query: 123 NNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSIS 182
           N+++S +++   ++ A  +FD+M E D++SWN MI  YA  G   E L+ +  +R     
Sbjct: 336 NSLISMFSSFSSVEEACYVFDHMNECDIISWNAMISAYAHHGLCRESLRCFHWMRHLHNE 395

Query: 183 CNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRL 242
            N  + + +L++C  ++ LK  R +HG V+  G  SNV I ++++  Y++ G   DA  +
Sbjct: 396 TNSTTLSSLLSVCSSVDNLKWGRGIHGLVVKLGLDSNVCICNTLLTLYSEAGRSEDAELV 455

Query: 243 FDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKAL 302
           F     RD+++W +M++ Y + G      K+  E+ +   V                   
Sbjct: 456 FQAMTERDLISWNSMMACYVQDGKCLDGLKILAELLQMGKVM------------------ 497

Query: 303 ELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMY 362
                        N  TF+S L AC++   L   K VH  +I   F    IV ++L+ MY
Sbjct: 498 -------------NHVTFASALAACSNPECLIESKIVHALIIVAGFHDFLIVGNALVTMY 544

Query: 363 SKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITL 422
            K G + + ++V   T  + + + WN +I    ++    +A++ +  +    +  + IT+
Sbjct: 545 GKLGMMMEAKKVLQ-TMPQPDRVTWNALIGGHAENEEPNEAVKAYKLIREKGIPANYITM 603

Query: 423 AVILNACT 430
             +L AC+
Sbjct: 604 VSVLGACS 611



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 76/280 (27%), Positives = 138/280 (49%), Gaps = 37/280 (13%)

Query: 34  SEAISSLDLLAQRGIRLPAETLAFILQQC-AESKSLKLGKRVHLHLKLTQRKTPTTFLSN 92
           +EA+ +  L+ ++GI     T+  +L  C A    LK G  +H H+ LT  ++   ++ N
Sbjct: 582 NEAVKAYKLIREKGIPANYITMVSVLGACSAPDDLLKHGMPIHAHIVLTGFES-DDYVKN 640

Query: 93  HLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVS 152
            LI+MY KCG    +  +FD +  K+  ++N M++  AN                     
Sbjct: 641 SLITMYAKCGDLNSSNYIFDGLGNKSPITWNAMVA--AN--------------------- 677

Query: 153 WNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVL 212
                   A  G  EE LK +  +R   ++ ++FSF+G L     L  L+  +Q+HG V+
Sbjct: 678 --------AHHGCGEEALKIFGEMRNVGVNLDQFSFSGGLAATANLAVLEEGQQLHGLVI 729

Query: 213 VTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASK 272
             GF S++ ++++ +D Y KCGE+ D  ++  +   R  L+W  ++S +A+ G  + A +
Sbjct: 730 KLGFESDLHVTNAAMDMYGKCGEMHDVLKMLPQPINRSRLSWNILISAFARHGCFQKARE 789

Query: 273 LFNEM----PEKNPVSWTTLIAGYTRNGLGQKALELFTRM 308
            F+EM    P+ + V++ +L++     GL  + L  +  M
Sbjct: 790 TFHEMLKLGPKPDHVTFVSLLSACNHGGLVDEGLAYYDSM 829



 Score = 89.4 bits (220), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 72/311 (23%), Positives = 144/311 (46%), Gaps = 50/311 (16%)

Query: 202 KLTRQVHGQVL----VTGFLS-NVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTT 256
           ++T Q+ G+ L    + G ++  +  ++++++ Y+K G +  AR +FDE   R+  +W+T
Sbjct: 106 EITSQMAGKALHAFCIVGSVNLGIFQTNTLINMYSKFGNIEHARYVFDEMRHRNEASWST 165

Query: 257 MVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPN 316
           M+SGY ++G  E A  LF +M       W          GLG              + PN
Sbjct: 166 MLSGYVRVGLYEEAVGLFCQM-------W----------GLG--------------VEPN 194

Query: 317 QHTFSSCLCACA-SIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVF 375
               +S + AC+ S      G QVHGF+++T    +  V ++L+  Y   G + + +++F
Sbjct: 195 GFMVASLITACSRSGYMADEGFQVHGFVVKTGILGDVYVGTALVHFYGSIGLVYNAQKLF 254

Query: 376 DLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLV 435
           +   +  N + W +++   +  G   + + ++  M +  V  ++ T A + ++C   GL+
Sbjct: 255 EEMPD-HNVVSWTSLMVGYSDSGNPGEVLNVYQRMRQEGVSGNQNTFATVTSSC---GLL 310

Query: 436 QEGLTYFESMTH--DLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNAL 493
           ++ +  ++ + H    G   +      LI + +     ++     + M  E D   WNA+
Sbjct: 311 EDQVLGYQVLGHIIQYGFEDSVSVANSLISMFSSFSSVEEACYVFDHMN-ECDIISWNAM 369

Query: 494 ------HGVCR 498
                 HG+CR
Sbjct: 370 ISAYAHHGLCR 380



 Score = 70.1 bits (170), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 66/249 (26%), Positives = 102/249 (40%), Gaps = 26/249 (10%)

Query: 261 YAKLGDMESASKLFNEMPEKNPVSWT------TLIAGYTRNG-LGQKALELFTRMMILRI 313
           +A +  + +AS L NE P +N           T  AG  R G L     ++F +      
Sbjct: 30  WAPVSTITTASALINETPVENFAEQVKDDDLKTSNAGSRRWGCLDGDIAKVFLQ------ 83

Query: 314 RPNQHTFSSCLCACA---------SIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSK 364
              QHT     C  A          I S   GK +H F I  +        ++LI+MYSK
Sbjct: 84  --QQHTDYGIRCLNAVNFPLKGFSEITSQMAGKALHAFCIVGSVNLGIFQTNTLINMYSK 141

Query: 365 CGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAV 424
            G +   R VFD   ++ N   W+TM+S   + G  E+A+ LF  M    V+P+   +A 
Sbjct: 142 FGNIEHARYVFDEMRHR-NEASWSTMLSGYVRVGLYEEAVGLFCQMWGLGVEPNGFMVAS 200

Query: 425 ILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYE 484
           ++ AC+ SG + +            GI+ +      L+      G         E+MP +
Sbjct: 201 LITACSRSGYMADEGFQVHGFVVKTGILGDVYVGTALVHFYGSIGLVYNAQKLFEEMP-D 259

Query: 485 HDSYLWNAL 493
           H+   W +L
Sbjct: 260 HNVVSWTSL 268



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 66/287 (22%), Positives = 121/287 (42%), Gaps = 33/287 (11%)

Query: 35  EAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVH-LHLKLTQRKTPTTFLSNH 93
           EA+     +   G+ L   + +  L   A    L+ G+++H L +KL         ++N 
Sbjct: 685 EALKIFGEMRNVGVNLDQFSFSGGLAATANLAVLEEGQQLHGLVIKLGFESD--LHVTNA 742

Query: 94  LISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNM----AERD 149
            + MY KCG   D  K+  +   ++  S+N ++S +A  G  + AR  F  M     + D
Sbjct: 743 AMDMYGKCGEMHDVLKMLPQPINRSRLSWNILISAFARHGCFQKARETFHEMLKLGPKPD 802

Query: 150 VVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEEL--KLTRQV 207
            V++ +++      G V+EGL +Y  + R      EF     +  CV + +L  +  R  
Sbjct: 803 HVTFVSLLSACNHGGLVDEGLAYYDSMTR------EFGVFPGIEHCVCIIDLLGRSGRLS 856

Query: 208 HGQVLVTGFLSNVVISS------SIVDAYAKCGELSDARRL------FDETDARDVLTWT 255
           H +    GF+  + +        S++ A    G L  AR+        D +D    + ++
Sbjct: 857 HAE----GFIKEMPVPPNDLAWRSLLAACRIHGNLELARKTAEHLLELDPSDDSAYVLYS 912

Query: 256 TMVSGYAKLGDMESASKLF--NEMPEKNPVSWTTLIAGYTRNGLGQK 300
            + +   K  D+E+  K    N + ++   SW  L       G+G+K
Sbjct: 913 NVCATSGKWEDVENLRKEMGSNNIKKQPACSWVKLKDKVHSFGMGEK 959


>gi|15241180|ref|NP_200442.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171630|sp|Q9FMA1.1|PP433_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g56310
 gi|10177829|dbj|BAB11258.1| unnamed protein product [Arabidopsis thaliana]
 gi|332009364|gb|AED96747.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 530

 Score =  293 bits (749), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 149/470 (31%), Positives = 269/470 (57%), Gaps = 6/470 (1%)

Query: 130 ANLGMMKHARNLFDNMAERDVVSWNTMIIGYA---KSGAVEEGLKFYKVLRRFSISCNEF 186
           +N G +++A ++F +    +    NTMI   +   +  A    +  Y+ L       + F
Sbjct: 58  SNAGHLRYAYSVFTHQPCPNTYLHNTMIRALSLLDEPNAHSIAITVYRKLWALCAKPDTF 117

Query: 187 SFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDET 246
           +F  +L I V++ ++   RQ+HGQV+V GF S+V + + ++  Y  CG L DAR++FDE 
Sbjct: 118 TFPFVLKIAVRVSDVWFGRQIHGQVVVFGFDSSVHVVTGLIQMYFSCGGLGDARKMFDEM 177

Query: 247 DARDVLTWTTMVSGYAKLGDMESASKLFNEMP--EKNPVSWTTLIAGYTRNGLGQKALEL 304
             +DV  W  +++GY K+G+M+ A  L   MP   +N VSWT +I+GY ++G   +A+E+
Sbjct: 178 LVKDVNVWNALLAGYGKVGEMDEARSLLEMMPCWVRNEVSWTCVISGYAKSGRASEAIEV 237

Query: 305 FTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSK 364
           F RM++  + P++ T  + L ACA + SL+ G+++  ++          + +++IDMY+K
Sbjct: 238 FQRMLMENVEPDEVTLLAVLSACADLGSLELGERICSYVDHRGMNRAVSLNNAVIDMYAK 297

Query: 365 CGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAV 424
            G +     VF+   N+ N + W T+I+ L  HG+  +A+ +F+ MV++ V+P+ +T   
Sbjct: 298 SGNITKALDVFECV-NERNVVTWTTIIAGLATHGHGAEALAMFNRMVKAGVRPNDVTFIA 356

Query: 425 ILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYE 484
           IL+AC+H G V  G   F SM    GI PN EH+ C+I+LL +AG   +    ++ MP++
Sbjct: 357 ILSACSHVGWVDLGKRLFNSMRSKYGIHPNIEHYGCMIDLLGRAGKLREADEVIKSMPFK 416

Query: 485 HDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVR 544
            ++ +W +L     +H ++++G + + +LI   P +S  + LL+++YS LG+      +R
Sbjct: 417 ANAAIWGSLLAASNVHHDLELGERALSELIKLEPNNSGNYMLLANLYSNLGRWDESRMMR 476

Query: 545 QLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQM 594
            ++     KK    S IE+EN+V+ F   D  HP  + ++ +L+++  Q+
Sbjct: 477 NMMKGIGVKKMAGESSIEVENRVYKFISGDLTHPQVERIHEILQEMDLQI 526



 Score =  154 bits (388), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 96/362 (26%), Positives = 178/362 (49%), Gaps = 35/362 (9%)

Query: 54  TLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDK 113
           T  F+L+       +  G+++H  + +    +    ++  LI MYF CG   DARK+FD+
Sbjct: 118 TFPFVLKIAVRVSDVWFGRQIHGQVVVFGFDSSVHVVTG-LIQMYFSCGGLGDARKMFDE 176

Query: 114 IPVKNLFSYNNMLSGYANLGMMKHARNLFDNMA--ERDVVSWNTMIIGYAKSGAVEEGLK 171
           + VK++  +N +L+GY  +G M  AR+L + M    R+ VSW  +I GYAKSG   E ++
Sbjct: 177 MLVKDVNVWNALLAGYGKVGEMDEARSLLEMMPCWVRNEVSWTCVISGYAKSGRASEAIE 236

Query: 172 FYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYA 231
            ++ +   ++  +E +   +L+ C  L  L+L  ++   V   G    V ++++++D YA
Sbjct: 237 VFQRMLMENVEPDEVTLLAVLSACADLGSLELGERICSYVDHRGMNRAVSLNNAVIDMYA 296

Query: 232 KCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAG 291
           K G ++ A  +F+  + R+V+TWTT+++G A                             
Sbjct: 297 KSGNITKALDVFECVNERNVVTWTTIIAGLAT---------------------------- 328

Query: 292 YTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFL-IRTNFRS 350
              +G G +AL +F RM+   +RPN  TF + L AC+ +  +  GK++   +  +     
Sbjct: 329 ---HGHGAEALAMFNRMVKAGVRPNDVTFIAILSACSHVGWVDLGKRLFNSMRSKYGIHP 385

Query: 351 NTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDM 410
           N      +ID+  + G L +  +V      K N+ +W ++++A   H   E   R   ++
Sbjct: 386 NIEHYGCMIDLLGRAGKLREADEVIKSMPFKANAAIWGSLLAASNVHHDLELGERALSEL 445

Query: 411 VR 412
           ++
Sbjct: 446 IK 447



 Score = 56.2 bits (134), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 58/274 (21%), Positives = 120/274 (43%), Gaps = 15/274 (5%)

Query: 12  RKNLPNNCLIQSFLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLG 71
           R  +   C+I  +      G+ SEAI     +    +     TL  +L  CA+  SL+LG
Sbjct: 213 RNEVSWTCVISGY---AKSGRASEAIEVFQRMLMENVEPDEVTLLAVLSACADLGSLELG 269

Query: 72  KRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYAN 131
           +R+  ++         + L+N +I MY K G+   A  VF+ +  +N+ ++  +++G A 
Sbjct: 270 ERICSYVDHRGMNRAVS-LNNAVIDMYAKSGNITKALDVFECVNERNVVTWTTIIAGLAT 328

Query: 132 LGMMKHARNLFDNMAERDV----VSWNTMIIGYAKSGAVEEGLKFYKVLR-RFSISCNEF 186
            G    A  +F+ M +  V    V++  ++   +  G V+ G + +  +R ++ I  N  
Sbjct: 329 HGHGAEALAMFNRMVKAGVRPNDVTFIAILSACSHVGWVDLGKRLFNSMRSKYGIHPNIE 388

Query: 187 SFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDE- 245
            +  ++ +  +  +L+   +V   +    F +N  I  S++ A     +L    R   E 
Sbjct: 389 HYGCMIDLLGRAGKLREADEV---IKSMPFKANAAIWGSLLAASNVHHDLELGERALSEL 445

Query: 246 --TDARDVLTWTTMVSGYAKLGDMESASKLFNEM 277
              +  +   +  + + Y+ LG  + +  + N M
Sbjct: 446 IKLEPNNSGNYMLLANLYSNLGRWDESRMMRNMM 479


>gi|225435554|ref|XP_002283117.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
           [Vitis vinifera]
          Length = 624

 Score =  293 bits (749), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 171/541 (31%), Positives = 280/541 (51%), Gaps = 36/541 (6%)

Query: 57  FILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKC--GSDVDARKVFDKI 114
           F L+ C   KS+   K+ H HL +T         +N L+ +      GS   A ++FD+I
Sbjct: 20  FSLESC---KSMNQIKQTHAHL-ITTGLILHPITANKLLKVLIASSFGSLSYAHQLFDQI 75

Query: 115 PVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYK 174
           P  ++F YN M+  +A +    H                N+M I             F  
Sbjct: 76  PKPDVFIYNTMIKAHAVIPTSSH----------------NSMRI-------------FLS 106

Query: 175 VLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCG 234
           ++R      N ++F  +   C     +    Q+    +  G  SN+ ++++++  YA  G
Sbjct: 107 MVRVSGFLPNRYTFVFVFKACGNGLGVLEGEQIRVHAIKIGLESNLFVTNAMIRMYANWG 166

Query: 235 ELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTR 294
            + +ARR+FD +  +D+ +W  M+ GY   G++  A ++F+EM E++ VSWTT+IAGY +
Sbjct: 167 LVDEARRVFDWSLDQDLYSWNIMIGGYVGSGEIGRAKEMFDEMSERDVVSWTTIIAGYVQ 226

Query: 295 NGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIV 354
            G  ++AL+LF  M+     PN+ T +S L ACA++V+L  G+ +H ++ ++  + N  +
Sbjct: 227 VGCFKEALDLFHEMLQTGPPPNEFTLASALAACANLVALDQGRWIHVYIDKSEIKMNERL 286

Query: 355 MSSLIDMYSKCGCLNDGRQVF-DLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRS 413
           ++SL+DMY+KCG ++   +VF D    K     WN MI     HG  ++AI LF  M   
Sbjct: 287 LASLLDMYAKCGEIDFAAKVFHDEYGLKLKVWPWNAMIGGYAMHGKSKEAIDLFEQMKVE 346

Query: 414 SVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQ 473
            V P+K+T   +LNAC+H  LV+EG  YF+SM    GI P  EH+ C+++LL ++G   +
Sbjct: 347 KVSPNKVTFVALLNACSHGKLVEEGRGYFKSMASSYGIEPEIEHYGCMVDLLGRSGLLKE 406

Query: 474 LMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSA 533
               +  MP   D+ +W AL G CRIH +I+ G+++   + + +      H LL+++YSA
Sbjct: 407 AEETVFNMPMAPDATIWGALLGACRIHKDIERGQRIGKIIKELDSDHIGCHVLLANLYSA 466

Query: 534 LGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQ 593
            G+    + VRQ I     KK    S IE+    H F V D  HP    LY  L+++  +
Sbjct: 467 SGQWDEAKAVRQKIEVSGRKKTPGCSSIELNGVFHQFLVGDRSHPQTKQLYLFLDEMTTK 526

Query: 594 M 594
           +
Sbjct: 527 L 527



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 100/369 (27%), Positives = 169/369 (45%), Gaps = 61/369 (16%)

Query: 54  TLAFILQQCAESKSLKLGKRVHLH-LKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFD 112
           T  F+ + C     +  G+++ +H +K+        F++N +I MY   G   +AR+VFD
Sbjct: 119 TFVFVFKACGNGLGVLEGEQIRVHAIKIGLESN--LFVTNAMIRMYANWGLVDEARRVFD 176

Query: 113 KIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKF 172
               ++L+S+N M+ GY   G +  A+ +FD M+ERDVVSW T+I GY + G  +E L  
Sbjct: 177 WSLDQDLYSWNIMIGGYVGSGEIGRAKEMFDEMSERDVVSWTTIIAGYVQVGCFKEALDL 236

Query: 173 YKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAK 232
           +  + +     NEF+ A  L  C  L  L   R +H  +  +    N  + +S++D YAK
Sbjct: 237 FHEMLQTGPPPNEFTLASALAACANLVALDQGRWIHVYIDKSEIKMNERLLASLLDMYAK 296

Query: 233 CGELSDARRLF-DETDAR-DVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIA 290
           CGE+  A ++F DE   +  V  W  M+ GYA                            
Sbjct: 297 CGEIDFAAKVFHDEYGLKLKVWPWNAMIGGYA---------------------------- 328

Query: 291 GYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRS 350
               +G  ++A++LF +M + ++ PN+ TF + L AC+      HGK V     R  F+S
Sbjct: 329 ---MHGKSKEAIDLFEQMKVEKVSPNKVTFVALLNACS------HGKLVEEG--RGYFKS 377

Query: 351 NTIVMSS-------------LIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQH 397
               M+S             ++D+  + G L +  +         ++ +W  ++ A   H
Sbjct: 378 ----MASSYGIEPEIEHYGCMVDLLGRSGLLKEAEETVFNMPMAPDATIWGALLGACRIH 433

Query: 398 GYDEQAIRL 406
              E+  R+
Sbjct: 434 KDIERGQRI 442



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 46/153 (30%), Positives = 75/153 (49%), Gaps = 7/153 (4%)

Query: 28  ISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPT 87
           +  G   EA+     + Q G      TLA  L  CA   +L  G+ +H+++  ++ K   
Sbjct: 225 VQVGCFKEALDLFHEMLQTGPPPNEFTLASALAACANLVALDQGRWIHVYIDKSEIKMNE 284

Query: 88  TFLSNHLISMYFKCGSDVDARKVF-DKIPVK-NLFSYNNMLSGYANLGMMKHARNLFDNM 145
             L++ L+ MY KCG    A KVF D+  +K  ++ +N M+ GYA  G  K A +LF+ M
Sbjct: 285 RLLAS-LLDMYAKCGEIDFAAKVFHDEYGLKLKVWPWNAMIGGYAMHGKSKEAIDLFEQM 343

Query: 146 AERDV----VSWNTMIIGYAKSGAVEEGLKFYK 174
               V    V++  ++   +    VEEG  ++K
Sbjct: 344 KVEKVSPNKVTFVALLNACSHGKLVEEGRGYFK 376


>gi|449530632|ref|XP_004172298.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g08820-like [Cucumis sativus]
          Length = 688

 Score =  293 bits (749), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 173/593 (29%), Positives = 295/593 (49%), Gaps = 65/593 (10%)

Query: 3   SNFSPRGINRKNLPNNCLIQSFL-SLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQ 61
           +N+S    ++   PN  L  + +  L+SK    +AI     +   G      T+ F+L+ 
Sbjct: 64  TNYSKLVFSQVKEPNIFLWNTMIRGLVSKDCFDDAIHLYGSMRGGGFLPNNFTIPFVLKA 123

Query: 62  CAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFS 121
           CA    ++LG ++H  L +        F+   L+S+Y KC +  DA KVF          
Sbjct: 124 CARKLDVRLGLKIH-SLLVKAGYDHDVFVKTSLLSLYVKCDNFDDALKVF---------- 172

Query: 122 YNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSI 181
                                D++ +++VVSW  +I GY  SG   E +  +K L    +
Sbjct: 173 ---------------------DDIPDKNVVSWTAIITGYISSGHFREAIGAFKKLLEMGL 211

Query: 182 SCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARR 241
             + FS   +L  C +L +                                 GE  D R 
Sbjct: 212 KPDSFSLVKVLAACARLGD------------------------------CTSGEWID-RY 240

Query: 242 LFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKA 301
           + D    R+V   T+++  Y K G++E A+ +F+ MPEK+ VSW+T+I GY  NGL Q+A
Sbjct: 241 ISDSGMGRNVFVATSLLDMYVKCGNLERANLIFSAMPEKDIVSWSTMIQGYAFNGLPQQA 300

Query: 302 LELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDM 361
           L+LF +M    ++P+ +T    L ACA++ +L  G      + R  F SN ++ ++LIDM
Sbjct: 301 LDLFFQMQSENLKPDCYTMVGVLSACATLGALDLGIWASSLMDRNEFLSNPVLGTALIDM 360

Query: 362 YSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKIT 421
           YSKCG +    ++F     K++ ++WN M+  L+ +G+ +    LF  + +  ++PD+ T
Sbjct: 361 YSKCGSVTQAWEIFTAM-KKKDRVVWNAMMVGLSMNGHAKAVFSLFSLVEKHGIRPDENT 419

Query: 422 LAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKM 481
              +L  CTH G V EG  +F +M     + P+ EH+ C+++LL +AG  ++    +  M
Sbjct: 420 FIGLLCGCTHGGFVNEGRQFFNNMKRVFSLTPSIEHYGCMVDLLGRAGLLNEAHQLINNM 479

Query: 482 PYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVE 541
           P + ++ +W AL G C++H +  +  +V+ +LI+  P +S  +  LS+IYS   +    E
Sbjct: 480 PMKPNAVVWGALLGGCKLHKDTHLAEQVLKKLIELEPWNSGNYVQLSNIYSGNHRWEEAE 539

Query: 542 KVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQM 594
           K+R  + E+Q +K +A SWIEI+  VH F V D  H + + +Y+ L++L  ++
Sbjct: 540 KIRSTMKEQQIQKIRACSWIEIDGIVHEFLVGDKSHWLSEKIYAKLDELGREL 592


>gi|4455294|emb|CAB36829.1| putative protein [Arabidopsis thaliana]
 gi|7268069|emb|CAB78407.1| putative protein [Arabidopsis thaliana]
          Length = 1024

 Score =  292 bits (748), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 166/573 (28%), Positives = 291/573 (50%), Gaps = 67/573 (11%)

Query: 27  LISKGQLSEAISSLDLLAQRGIR--LPAE-TLAFILQQCAESKSLKLGKRVHLHLKLTQR 83
           L++ G L +  +S  +  Q  I   +P + T   IL+ C     L+LG+++H  +     
Sbjct: 422 LVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQI----- 476

Query: 84  KTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFD 143
              T F  N  +     C   +D                      YA LG +  A ++  
Sbjct: 477 -IKTNFQLNAYV-----CSVLIDM---------------------YAKLGKLDTAWDILI 509

Query: 144 NMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKL 203
             A +DVVSW TMI GY +    ++ L  ++ +    I  +E      ++ C  L+ LK 
Sbjct: 510 RFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALKE 569

Query: 204 TRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAK 263
            +Q+H Q  V+GF S++   +++V  Y++CG++                           
Sbjct: 570 GQQIHAQACVSGFSSDLPFQNALVTLYSRCGKI--------------------------- 602

Query: 264 LGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSC 323
               E +   F +    + ++W  L++G+ ++G  ++AL +F RM    I  N  TF S 
Sbjct: 603 ----EESYLAFEQTEAGDNIAWNALVSGFQQSGNNEEALRVFVRMNREGIDNNNFTFGSA 658

Query: 324 LCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKEN 383
           + A +   ++K GKQVH  + +T + S T V ++LI MY+KCG ++D  + F L  + +N
Sbjct: 659 VKAASETANMKQGKQVHAVITKTGYDSETEVCNALISMYAKCGSISDAEKQF-LEVSTKN 717

Query: 384 SMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFE 443
            + WN +I+A ++HG+  +A+  F  M+ S+V+P+ +TL  +L+AC+H GLV +G+ YFE
Sbjct: 718 EVSWNAIINAYSKHGFGSEALDSFDQMIHSNVRPNHVTLVGVLSACSHIGLVDKGIAYFE 777

Query: 444 SMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNI 503
           SM  + G+ P  EH+ C++++L +AG   +    +++MP + D+ +W  L   C +H N+
Sbjct: 778 SMNSEYGLSPKPEHYVCVVDMLTRAGLLSRAKEFIQEMPIKPDALVWRTLLSACVVHKNM 837

Query: 504 DMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEI 563
           ++G      L++  P+ SAT+ LLS++Y+   K    +  RQ + E+  KKE   SWIE+
Sbjct: 838 EIGEFAAHHLLELEPEDSATYVLLSNLYAVSKKWDARDLTRQKMKEKGVKKEPGQSWIEV 897

Query: 564 ENKVHAFSVSDSLHPMRDVLYSVLEQLAGQMGE 596
           +N +H+F V D  HP+ D ++   + L  +  E
Sbjct: 898 KNSIHSFYVGDQNHPLADEIHEYFQDLTKRASE 930



 Score =  166 bits (420), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 137/533 (25%), Positives = 237/533 (44%), Gaps = 56/533 (10%)

Query: 18  NCLIQSFLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAES-KSLKLGKRVHL 76
           N L+  +  L   G L  A      ++QR   +   TL   L QC    K+++L KR+HL
Sbjct: 287 NALVSLYFHL---GNLISAEHIFSNMSQRD-AVTYNTLINGLSQCGYGEKAMELFKRMHL 342

Query: 77  HLKLTQRKTPTTFLSNHLISMYFKCGSD--VDARKVFDKIPVKNLFSYNNMLSG-----Y 129
                    P    SN L S+   C +D  +   +       K  F+ NN + G     Y
Sbjct: 343 -----DGLEPD---SNTLASLVVACSADGTLFRGQQLHAYTTKLGFASNNKIEGALLNLY 394

Query: 130 ANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFA 189
           A    ++ A + F      +VV WN M++ Y     +    + ++ ++   I  N++++ 
Sbjct: 395 AKCADIETALDYFLETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYP 454

Query: 190 GILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDAR 249
            IL  C++L +L+L  Q+H Q++ T F  N  + S ++D YAK                 
Sbjct: 455 SILKTCIRLGDLELGEQIHSQIIKTNFQLNAYVCSVLIDMYAK----------------- 497

Query: 250 DVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMM 309
                         LG +++A  +      K+ VSWTT+IAGYT+     KAL  F +M+
Sbjct: 498 --------------LGKLDTAWDILIRFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQML 543

Query: 310 ILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLN 369
              IR ++   ++ + ACA + +LK G+Q+H     + F S+    ++L+ +YS+CG + 
Sbjct: 544 DRGIRSDEVGLTNAVSACAGLQALKEGQQIHAQACVSGFSSDLPFQNALVTLYSRCGKIE 603

Query: 370 DGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNAC 429
           +    F+ T+  +N + WN ++S   Q G +E+A+R+F  M R  +  +  T    + A 
Sbjct: 604 ESYLAFEQTEAGDN-IAWNALVSGFQQSGNNEEALRVFVRMNREGIDNNNFTFGSAVKAA 662

Query: 430 THSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYL 489
           + +  +++G      +T   G     E    LI + A+ G       Q  ++  +++   
Sbjct: 663 SETANMKQGKQVHAVITKT-GYDSETEVCNALISMYAKCGSISDAEKQFLEVSTKNEVS- 720

Query: 490 WNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEK 542
           WNA+      HG         DQ+I  N + +  H  L  + SA     LV+K
Sbjct: 721 WNAIINAYSKHGFGSEALDSFDQMIHSNVRPN--HVTLVGVLSACSHIGLVDK 771



 Score =  165 bits (418), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 136/534 (25%), Positives = 231/534 (43%), Gaps = 102/534 (19%)

Query: 40  LDLLAQRGIRLPAETLAFILQQCAESK-SLKLGKRVHLHLKLTQRKTPTTFLSNHLISMY 98
           +D +  RGIR   +TL ++L+ C ++  SL  G+++H  + L         LS  L   Y
Sbjct: 32  IDSVENRGIRPNHQTLKWLLEGCLKTNGSLDEGRKLHSQI-LKLGLDSNGCLSEKLFDFY 90

Query: 99  FKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMII 158
              G    A KVFD++P                               ER + +WN MI 
Sbjct: 91  LFKGDLYGAFKVFDEMP-------------------------------ERTIFTWNKMIK 119

Query: 159 GYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLE-ELKLTRQVHGQVLVTGFL 217
             A    + E    +  +   +++ NE +F+G+L  C        +  Q+H ++L  G  
Sbjct: 120 ELASRNLIGEVFGLFVRMVSENVTPNEGTFSGVLEACRGGSVAFDVVEQIHARILYQGLR 179

Query: 218 SNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEM 277
            + V+ + ++D Y++ G +  ARR+FD    +D  +W  M+SG +K              
Sbjct: 180 DSTVVCNPLIDLYSRNGFVDLARRVFDGLRLKDHSSWVAMISGLSK-------------- 225

Query: 278 PEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGK 337
                            N    +A+ LF  M +L I P  + FSS L AC  I SL+ G+
Sbjct: 226 -----------------NECEAEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGE 268

Query: 338 QVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQH 397
           Q+HG +++  F S+T V ++L+ +Y   G L     +F    ++ +++ +NT+I+ L+Q 
Sbjct: 269 QLHGLVLKLGFSSDTYVCNALVSLYFHLGNLISAEHIFS-NMSQRDAVTYNTLINGLSQC 327

Query: 398 GYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEH 457
           GY E+A+ LF  M    ++PD  TLA ++ AC+  G +  G     + T  LG   N + 
Sbjct: 328 GYGEKAMELFKRMHLDGLEPDSNTLASLVVACSADGTLFRG-QQLHAYTTKLGFASNNKI 386

Query: 458 HACLIELLAQA----------------------------GCSDQLMNQ---LEKMPYEH- 485
              L+ L A+                             G  D L N      +M  E  
Sbjct: 387 EGALLNLYAKCADIETALDYFLETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEI 446

Query: 486 --DSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSA-THGLLSSIYSALGK 536
             + Y + ++   C   G++++G ++  Q+I  N Q +A    +L  +Y+ LGK
Sbjct: 447 VPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTNFQLNAYVCSVLIDMYAKLGK 500


>gi|297823163|ref|XP_002879464.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297325303|gb|EFH55723.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 713

 Score =  292 bits (748), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 169/543 (31%), Positives = 280/543 (51%), Gaps = 68/543 (12%)

Query: 58  ILQQCAESKSLKLGKRVHLHLKLTQRKTPTTF--LSNHLISMYFKCGSDVDARKVFDKIP 115
           +L   A +  + LG+++H    +T +     F  LSN L++MY KC S            
Sbjct: 216 VLSSLAATVYVGLGRQIH---GITVKNGLLGFVALSNALVTMYSKCES------------ 260

Query: 116 VKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKV 175
                              +  A  +FD+  +R+ ++W+ M+ GY+++G   E +K +  
Sbjct: 261 -------------------LNEACKMFDSSGDRNSITWSAMVTGYSQNGESLEAIKLFSR 301

Query: 176 LRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGE 235
           +    I  +E++  G+L  C  +  L   +Q+H  +L  GF  ++  ++++VD YAK G 
Sbjct: 302 MFSAGIKPSEYTIVGVLNACSDICYLVEGKQLHSFLLKLGFERHLFATTALVDMYAKAGC 361

Query: 236 LSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRN 295
           L+DAR+ FD    RDV  WT+++SGY +  D E                           
Sbjct: 362 LADARKGFDCLQERDVALWTSLISGYVQNSDNE--------------------------- 394

Query: 296 GLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVM 355
               +AL L+ RM    I PN  T +S L AC+S+ +L+ GKQVHG  I+  F     + 
Sbjct: 395 ----EALILYRRMKTAGIIPNDPTMASVLKACSSLATLELGKQVHGHTIKHGFGLEVPIG 450

Query: 356 SSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSV 415
           S+L  MY+KCG L DG  VF  T NK+  + WN MIS L+ +G  ++A+ LF +M+    
Sbjct: 451 SALSTMYTKCGSLEDGNLVFRRTPNKD-VVSWNAMISGLSHNGQGDEALELFEEMLAEGT 509

Query: 416 KPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLM 475
           +PD +T   I++AC+H G V+ G +YF  M+   G+ P  +H+AC++++L++AG   +  
Sbjct: 510 EPDDVTFVNIISACSHKGFVERGWSYFHMMSDQFGLDPKVDHYACMVDVLSRAGQLKETK 569

Query: 476 NQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALG 535
             +E    +H   LW  L   C+ HGN ++G    ++L+    + S+T+  L+ IY+ALG
Sbjct: 570 EFIESASIDHGLCLWRILLSACKNHGNCELGVYAGEKLMSLGSRESSTYVQLAGIYTALG 629

Query: 536 KGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQMG 595
           + R VE+V +L+      KE   SWI ++N+ H F V D++HP  +    ++  ++ QM 
Sbjct: 630 RMRDVERVWKLMRTNGVSKEVGCSWIALKNQWHVFVVGDTMHPRIEETKDLVSLVSRQML 689

Query: 596 EDA 598
           E+ 
Sbjct: 690 EEG 692



 Score =  119 bits (297), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 83/283 (29%), Positives = 127/283 (44%), Gaps = 38/283 (13%)

Query: 31  GQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVH-LHLKLTQRKTPTTF 89
           G+  EAI     +   GI+    T+  +L  C++   L  GK++H   LKL   +    F
Sbjct: 290 GESLEAIKLFSRMFSAGIKPSEYTIVGVLNACSDICYLVEGKQLHSFLLKLGFER--HLF 347

Query: 90  LSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERD 149
            +  L+ MY K G   DARK FD                                + ERD
Sbjct: 348 ATTALVDMYAKAGCLADARKGFD-------------------------------CLQERD 376

Query: 150 VVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHG 209
           V  W ++I GY ++   EE L  Y+ ++   I  N+ + A +L  C  L  L+L +QVHG
Sbjct: 377 VALWTSLISGYVQNSDNEEALILYRRMKTAGIIPNDPTMASVLKACSSLATLELGKQVHG 436

Query: 210 QVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMES 269
             +  GF   V I S++   Y KCG L D   +F  T  +DV++W  M+SG +  G  + 
Sbjct: 437 HTIKHGFGLEVPIGSALSTMYTKCGSLEDGNLVFRRTPNKDVVSWNAMISGLSHNGQGDE 496

Query: 270 ASKLFNEM----PEKNPVSWTTLIAGYTRNGLGQKALELFTRM 308
           A +LF EM     E + V++  +I+  +  G  ++    F  M
Sbjct: 497 ALELFEEMLAEGTEPDDVTFVNIISACSHKGFVERGWSYFHMM 539



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 85/351 (24%), Positives = 164/351 (46%), Gaps = 65/351 (18%)

Query: 205 RQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKL 264
           R VH Q++ TG  +    ++ +V+ YAKCG+L+ A  +F+    +DV++W ++++GY++ 
Sbjct: 36  RAVHAQIIRTGTSTCTQHANVLVNFYAKCGQLAKAHSIFNAIICKDVVSWNSLITGYSQN 95

Query: 265 GDMESAS---KLFNEMPEKN--PVSW---------------------------------- 285
           G + S+    +LF EM  ++  P ++                                  
Sbjct: 96  GGISSSHTVMQLFREMRAQDILPNAYTLAGIFKAESSLQSCTVGRQAHALVVKMSSFGDI 155

Query: 286 ---TTLIAGYTRNGLGQKALELFTRMM-----ILRIR---------------PNQHTFSS 322
              T+L+  Y + GL    +  +   +     +LR +                + + F++
Sbjct: 156 YVDTSLVGMYCKAGLKYLYMVYYGFWLCYKKDVLRRQLKSSICFLEEKEKESDSDYVFTA 215

Query: 323 CLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKE 382
            L + A+ V +  G+Q+HG  ++        + ++L+ MYSKC  LN+  ++FD + ++ 
Sbjct: 216 VLSSLAATVYVGLGRQIHGITVKNGLLGFVALSNALVTMYSKCESLNEACKMFDSSGDR- 274

Query: 383 NSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYF 442
           NS+ W+ M++  +Q+G   +AI+LF  M  + +KP + T+  +LNAC+    + EG    
Sbjct: 275 NSITWSAMVTGYSQNGESLEAIKLFSRMFSAGIKPSEYTIVGVLNACSDICYLVEG-KQL 333

Query: 443 ESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNAL 493
            S    LG   +      L+++ A+AGC        + +  E D  LW +L
Sbjct: 334 HSFLLKLGFERHLFATTALVDMYAKAGCLADARKGFDCLQ-ERDVALWTSL 383



 Score = 69.3 bits (168), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 63/252 (25%), Positives = 112/252 (44%), Gaps = 11/252 (4%)

Query: 47  GIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVD 106
           GI     T+A +L+ C+   +L+LGK+VH H  +         + + L +MY KCGS  D
Sbjct: 407 GIIPNDPTMASVLKACSSLATLELGKQVHGH-TIKHGFGLEVPIGSALSTMYTKCGSLED 465

Query: 107 ARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNM----AERDVVSWNTMIIGYAK 162
              VF + P K++ S+N M+SG ++ G    A  LF+ M     E D V++  +I   + 
Sbjct: 466 GNLVFRRTPNKDVVSWNAMISGLSHNGQGDEALELFEEMLAEGTEPDDVTFVNIISACSH 525

Query: 163 SGAVEEGLKFYKVLR-RFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVV 221
            G VE G  ++ ++  +F +      +A ++ +  +  +LK T++      +   L    
Sbjct: 526 KGFVERGWSYFHMMSDQFGLDPKVDHYACMVDVLSRAGQLKETKEFIESASIDHGLCLWR 585

Query: 222 ISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLF-----NE 276
           I  S    +  C     A        +R+  T+  +   Y  LG M    +++     N 
Sbjct: 586 ILLSACKNHGNCELGVYAGEKLMSLGSRESSTYVQLAGIYTALGRMRDVERVWKLMRTNG 645

Query: 277 MPEKNPVSWTTL 288
           + ++   SW  L
Sbjct: 646 VSKEVGCSWIAL 657



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 32/115 (27%), Positives = 62/115 (53%), Gaps = 3/115 (2%)

Query: 123 NNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEG---LKFYKVLRRF 179
           N +++ YA  G +  A ++F+ +  +DVVSWN++I GY+++G +      ++ ++ +R  
Sbjct: 55  NVLVNFYAKCGQLAKAHSIFNAIICKDVVSWNSLITGYSQNGGISSSHTVMQLFREMRAQ 114

Query: 180 SISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCG 234
            I  N ++ AGI      L+   + RQ H  V+      ++ + +S+V  Y K G
Sbjct: 115 DILPNAYTLAGIFKAESSLQSCTVGRQAHALVVKMSSFGDIYVDTSLVGMYCKAG 169



 Score = 49.7 bits (117), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 30/100 (30%), Positives = 52/100 (52%), Gaps = 4/100 (4%)

Query: 332 SLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMI 391
           +L  G+ VH  +IRT   + T   + L++ Y+KCG L     +F+    K+  + WN++I
Sbjct: 31  NLVAGRAVHAQIIRTGTSTCTQHANVLVNFYAKCGQLAKAHSIFNAIICKD-VVSWNSLI 89

Query: 392 SALTQHG---YDEQAIRLFHDMVRSSVKPDKITLAVILNA 428
           +  +Q+G        ++LF +M    + P+  TLA I  A
Sbjct: 90  TGYSQNGGISSSHTVMQLFREMRAQDILPNAYTLAGIFKA 129


>gi|356509847|ref|XP_003523656.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33170-like
            [Glycine max]
          Length = 1611

 Score =  292 bits (748), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 150/489 (30%), Positives = 265/489 (54%), Gaps = 32/489 (6%)

Query: 116  VKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKV 175
            V + F    ++  Y+  G M+ A  LF N    D+ SWN ++ GY  SG   + L+ Y +
Sbjct: 1069 VLDSFVSTALIDVYSKRGKMEEAEFLFVNQDGFDLASWNAIMHGYIVSGDFPKALRLYIL 1128

Query: 176  LRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGE 235
            ++      ++ +          L  LK  +Q+H  V+  GF  ++ ++S ++D Y KCGE
Sbjct: 1129 MQESGERSDQITLVNAAKAAGGLVGLKQGKQIHAVVVKRGFNLDLFVTSGVLDMYLKCGE 1188

Query: 236  LSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRN 295
                                           MESA ++F+E+P  + V+WTT+I+G   N
Sbjct: 1189 -------------------------------MESARRVFSEIPSPDDVAWTTMISGCVEN 1217

Query: 296  GLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVM 355
            G  + AL  + +M + +++P+++TF++ + AC+ + +L+ G+Q+H  +++ N   +  VM
Sbjct: 1218 GQEEHALFTYHQMRLSKVQPDEYTFATLVKACSLLTALEQGRQIHANIVKLNCAFDPFVM 1277

Query: 356  SSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSV 415
            +SL+DMY+KCG + D R +F  T+ +  +  WN MI  L QHG  ++A++ F  M    V
Sbjct: 1278 TSLVDMYAKCGNIEDARGLFKRTNTRRIAS-WNAMIVGLAQHGNAKEALQFFKYMKSRGV 1336

Query: 416  KPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLM 475
             PD++T   +L+AC+HSGLV E    F SM  + GI P  EH++CL++ L++AG  ++  
Sbjct: 1337 MPDRVTFIGVLSACSHSGLVSEAYENFYSMQKNYGIEPEIEHYSCLVDALSRAGRIEEAE 1396

Query: 476  NQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALG 535
              +  MP+E  + ++  L   CR+  + + G++V ++L+   P  SA + LLS++Y+A  
Sbjct: 1397 KVISSMPFEASASMYRTLLNACRVQVDRETGKRVAEKLLALEPSDSAAYVLLSNVYAAAN 1456

Query: 536  KGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQMG 595
            +   V   R ++ +   KK+   SW++++NKVH F   D  H   DV+Y+ +E +  ++ 
Sbjct: 1457 QWENVASARNMMRKVNVKKDPGFSWVDLKNKVHLFVAGDRSHEETDVIYNKVEYIMKRIR 1516

Query: 596  EDAPSLDAD 604
            E+    D D
Sbjct: 1517 EEGYVPDTD 1525



 Score =  158 bits (399), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 128/502 (25%), Positives = 215/502 (42%), Gaps = 99/502 (19%)

Query: 58   ILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVK 117
            IL+Q   +  L LGKR H  + LT    P  F++N+LI+M                    
Sbjct: 662  ILRQAIAASDLSLGKRAHARI-LTSGHHPDRFVTNNLITM-------------------- 700

Query: 118  NLFSYNNMLSGYANLGMMKHARNLFDNMAE--RDVVSWNTMIIGYAK-SGAVEEGLKFYK 174
                       YA  G +  AR LFD   +  RD+V+WN ++   A  +    +G   ++
Sbjct: 701  -----------YAKCGSLSSARKLFDTTPDTNRDLVTWNAILSALAAHADKSHDGFHLFR 749

Query: 175  VLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCG 234
            +LRR  +S    + A +  +C+       +  +HG  +  G   +V ++ ++V+ YAK G
Sbjct: 750  LLRRSVVSTTRHTLAPVFKMCLLSASPSASESLHGYAVKIGLQWDVFVAGALVNIYAKFG 809

Query: 235  ELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEM------PE--------- 279
             + +AR LFD    RDV+ W  M+  Y        A  LF+E       P+         
Sbjct: 810  LIREARVLFDGMAVRDVVLWNVMMKAYVDTCLEYEAMLLFSEFHRTGFRPDDVTLRTLSR 869

Query: 280  ----------------------------KNPVSWTTLIAGYTRNGLGQKALELFTRMMIL 311
                                         + + W   ++ + + G   +A++ F  M+  
Sbjct: 870  VVKCKKNILELKQFKAYATKLFMYDDDGSDVIVWNKALSRFLQRGEAWEAVDCFVDMINS 929

Query: 312  RIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDG 371
            R+  +  TF   L   A +  L+ GKQ+HG ++R+       V + LI+MY K G ++  
Sbjct: 930  RVACDGLTFVVMLTVVAGLNCLELGKQIHGIVMRSGLDQVVSVGNCLINMYVKAGSVSRA 989

Query: 372  RQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTH 431
            R VF    N+ + + WNTMIS  T  G +E ++ +F  ++R S+ PD+ T+A +L AC+ 
Sbjct: 990  RSVFGQM-NEVDLISWNTMISGCTLSGLEECSVGMFVHLLRDSLLPDQFTVASVLRACSS 1048

Query: 432  SGLVQEGLTYFESMTH----DLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDS 487
                 EG  Y  +  H      G++ +      LI++ ++ G     M + E +    D 
Sbjct: 1049 ----LEGGYYLATQIHACAMKAGVVLDSFVSTALIDVYSKRG----KMEEAEFLFVNQDG 1100

Query: 488  Y---LWNALHGVCRIHGNIDMG 506
            +    WNA+     +HG I  G
Sbjct: 1101 FDLASWNAI-----MHGYIVSG 1117



 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 111/414 (26%), Positives = 187/414 (45%), Gaps = 67/414 (16%)

Query: 27   LISKGQLSEAISS-LDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKT 85
             + +G+  EA+   +D++  R +     T   +L   A    L+LGK++H  + +     
Sbjct: 910  FLQRGEAWEAVDCFVDMINSR-VACDGLTFVVMLTVVAGLNCLELGKQIH-GIVMRSGLD 967

Query: 86   PTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNM 145
                + N LI+MY K GS                               +  AR++F  M
Sbjct: 968  QVVSVGNCLINMYVKAGS-------------------------------VSRARSVFGQM 996

Query: 146  AERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLE-ELKLT 204
             E D++SWNTMI G   SG  E  +  +  L R S+  ++F+ A +L  C  LE    L 
Sbjct: 997  NEVDLISWNTMISGCTLSGLEECSVGMFVHLLRDSLLPDQFTVASVLRACSSLEGGYYLA 1056

Query: 205  RQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKL 264
             Q+H   +  G + +  +S++++D Y+K G++ +A  LF   D  D+ +W  ++ GY   
Sbjct: 1057 TQIHACAMKAGVVLDSFVSTALIDVYSKRGKMEEAEFLFVNQDGFDLASWNAIMHGYIVS 1116

Query: 265  GDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCL 324
            GD   A +L+  M E                                  R +Q T  +  
Sbjct: 1117 GDFPKALRLYILMQESGE-------------------------------RSDQITLVNAA 1145

Query: 325  CACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENS 384
             A   +V LK GKQ+H  +++  F  +  V S ++DMY KCG +   R+VF    + ++ 
Sbjct: 1146 KAAGGLVGLKQGKQIHAVVVKRGFNLDLFVTSGVLDMYLKCGEMESARRVFSEIPSPDD- 1204

Query: 385  MLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEG 438
            + W TMIS   ++G +E A+  +H M  S V+PD+ T A ++ AC+    +++G
Sbjct: 1205 VAWTTMISGCVENGQEEHALFTYHQMRLSKVQPDEYTFATLVKACSLLTALEQG 1258



 Score =  105 bits (263), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 73/285 (25%), Positives = 129/285 (45%), Gaps = 36/285 (12%)

Query: 28   ISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPT 87
            I  G   +A+    L+ + G R    TL    +       LK GK++H  + + +     
Sbjct: 1114 IVSGDFPKALRLYILMQESGERSDQITLVNAAKAAGGLVGLKQGKQIHA-VVVKRGFNLD 1172

Query: 88   TFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAE 147
             F+++ ++ MY KCG    AR+VF +IP  +  ++  M+SG    G  +HA         
Sbjct: 1173 LFVTSGVLDMYLKCGEMESARRVFSEIPSPDDVAWTTMISGCVENGQEEHA--------- 1223

Query: 148  RDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQV 207
                                  L  Y  +R   +  +E++FA ++  C  L  L+  RQ+
Sbjct: 1224 ----------------------LFTYHQMRLSKVQPDEYTFATLVKACSLLTALEQGRQI 1261

Query: 208  HGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDM 267
            H  ++      +  + +S+VD YAKCG + DAR LF  T+ R + +W  M+ G A+ G+ 
Sbjct: 1262 HANIVKLNCAFDPFVMTSLVDMYAKCGNIEDARGLFKRTNTRRIASWNAMIVGLAQHGNA 1321

Query: 268  ESASKLFNEMPEK----NPVSWTTLIAGYTRNGLGQKALELFTRM 308
            + A + F  M  +    + V++  +++  + +GL  +A E F  M
Sbjct: 1322 KEALQFFKYMKSRGVMPDRVTFIGVLSACSHSGLVSEAYENFYSM 1366



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 46/173 (26%), Positives = 82/173 (47%), Gaps = 9/173 (5%)

Query: 16   PNNCLIQSFLS-LISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRV 74
            P++    + +S  +  GQ   A+ +   +    ++    T A +++ C+   +L+ G+++
Sbjct: 1202 PDDVAWTTMISGCVENGQEEHALFTYHQMRLSKVQPDEYTFATLVKACSLLTALEQGRQI 1261

Query: 75   HLHL-KLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLG 133
            H ++ KL     P  F+   L+ MY KCG+  DAR +F +   + + S+N M+ G A  G
Sbjct: 1262 HANIVKLNCAFDP--FVMTSLVDMYAKCGNIEDARGLFKRTNTRRIASWNAMIVGLAQHG 1319

Query: 134  MMKHARNLFDNMAERDVVSWNTMIIGY----AKSGAVEEGLK-FYKVLRRFSI 181
              K A   F  M  R V+      IG     + SG V E  + FY + + + I
Sbjct: 1320 NAKEALQFFKYMKSRGVMPDRVTFIGVLSACSHSGLVSEAYENFYSMQKNYGI 1372


>gi|90265157|emb|CAH67783.1| H0201G08.10 [Oryza sativa Indica Group]
          Length = 530

 Score =  292 bits (748), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 155/476 (32%), Positives = 249/476 (52%), Gaps = 7/476 (1%)

Query: 125 MLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCN 184
           +LS YA LG   HAR LFD M E+ +V    M   +  SG   + +  +  +    +  +
Sbjct: 51  LLSAYAALGSPDHARRLFDEMPEQGLVPRTAMARAHVASGQAAQAIAVFGDMVADGVFPD 110

Query: 185 EFSFAGILTICVKLEELKLTRQ----VHGQVLVTGFLSNVVISSSIVDAYAKCGELSDAR 240
             + A  L  C         R     +H  V+ +G + +V +S+ ++  Y + GEL  +R
Sbjct: 111 NVAVAVALGACHGAGSWTARRNPGKMIHALVVTSGIVPDVFVSTELIRVYGESGELPVSR 170

Query: 241 RLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQK 300
           R+FD+  +R  +TW  M+  YA+ G +++A ++F  MP ++ VSW T++AGY   G  ++
Sbjct: 171 RVFDDMPSRSTITWNAMLHQYARHGKVDTAYEMFLAMPRRDVVSWNTVLAGYCVAGRCRE 230

Query: 301 ALELFTRMMI---LRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSS 357
           AL LF +M+      + PN  T S+ L ACA    L+ G  VH ++ R     +  +   
Sbjct: 231 ALGLFRQMVSPSSCAVHPNVPTMSTILGACAGAGCLETGIWVHAYIERNRMNDDGYLDRC 290

Query: 358 LIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKP 417
           LIDMY KCG +++  QVF+    K++   W T+I  L  HG    A+R+F  M  + + P
Sbjct: 291 LIDMYCKCGSIDNALQVFEKAPRKKDLFSWTTVICGLAMHGRTTDALRMFDMMQDNGICP 350

Query: 418 DKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQ 477
           D +TL  +LNAC H GLV EGL YF SM     I P  EH+ C+I+LL + G   +  + 
Sbjct: 351 DDVTLVGVLNACAHGGLVDEGLGYFYSMEAKFRITPKIEHYGCMIDLLGRVGRLQEAYSM 410

Query: 478 LEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKG 537
           +  MP + ++ +W A    C++HGN+++G+   ++L   +P       +LSS+Y+     
Sbjct: 411 IRTMPMDPNTVIWGAFLSACKVHGNMELGKIAAEELTRLDPDDPWGRVMLSSMYAKAQDW 470

Query: 538 RLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQ 593
             + + R+ +N  Q KK    S IE++ +VH F    S HP    + SVL+ +  Q
Sbjct: 471 IGLARERREMNSMQVKKTPGCSSIELKGEVHEFVAGGSQHPQYAEICSVLQDVEAQ 526



 Score =  121 bits (304), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 99/387 (25%), Positives = 165/387 (42%), Gaps = 55/387 (14%)

Query: 28  ISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKL----GKRVHLHLKLTQR 83
           ++ GQ ++AI+    +   G+      +A  L  C  + S       GK +H  L +T  
Sbjct: 87  VASGQAAQAIAVFGDMVADGVFPDNVAVAVALGACHGAGSWTARRNPGKMIHA-LVVTSG 145

Query: 84  KTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFD 143
             P  F+S  LI +Y + G    +R+VFD +P ++  ++N ML  YA  G +  A  +F 
Sbjct: 146 IVPDVFVSTELIRVYGESGELPVSRRVFDDMPSRSTITWNAMLHQYARHGKVDTAYEMFL 205

Query: 144 NMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISC----NEFSFAGILTICVKLE 199
            M  RDVVSWNT++ GY  +G   E L  ++ +   S SC    N  + + IL  C    
Sbjct: 206 AMPRRDVVSWNTVLAGYCVAGRCREALGLFRQMVSPS-SCAVHPNVPTMSTILGACAGAG 264

Query: 200 ELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETD-ARDVLTWTTMV 258
            L+    VH  +       +  +   ++D Y KCG + +A ++F++    +D+ +WTT++
Sbjct: 265 CLETGIWVHAYIERNRMNDDGYLDRCLIDMYCKCGSIDNALQVFEKAPRKKDLFSWTTVI 324

Query: 259 SGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQH 318
            G A  G    A ++F+ M +               NG                I P+  
Sbjct: 325 CGLAMHGRTTDALRMFDMMQD---------------NG----------------ICPDDV 353

Query: 319 TFSSCLCACASIVSLKHGKQV-----HGFLIRTNFRSNTIV--MSSLIDMYSKCGCLNDG 371
           T    L ACA      HG  V     + + +   FR    +     +ID+  + G L + 
Sbjct: 354 TLVGVLNACA------HGGLVDEGLGYFYSMEAKFRITPKIEHYGCMIDLLGRVGRLQEA 407

Query: 372 RQVFDLTDNKENSMLWNTMISALTQHG 398
             +        N+++W   +SA   HG
Sbjct: 408 YSMIRTMPMDPNTVIWGAFLSACKVHG 434



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 84/331 (25%), Positives = 142/331 (42%), Gaps = 52/331 (15%)

Query: 255 TTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIR 314
           T ++S YA LG  + A +LF+EMPE+  V  T +   +  +G   +A+ +F  M+   + 
Sbjct: 49  TALLSAYAALGSPDHARRLFDEMPEQGLVPRTAMARAHVASGQAAQAIAVFGDMVADGVF 108

Query: 315 PNQHTFSSCLCACASIVSL----KHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLND 370
           P+    +  L AC    S       GK +H  ++ +    +  V + LI +Y + G L  
Sbjct: 109 PDNVAVAVALGACHGAGSWTARRNPGKMIHALVVTSGIVPDVFVSTELIRVYGESGELPV 168

Query: 371 GRQVFDLTDNKE----NSML--------------------------WNTMISALTQHGYD 400
            R+VFD   ++     N+ML                          WNT+++     G  
Sbjct: 169 SRRVFDDMPSRSTITWNAMLHQYARHGKVDTAYEMFLAMPRRDVVSWNTVLAGYCVAGRC 228

Query: 401 EQAIRLFHDMVRSS---VKPDKITLAVILNACTHSGLVQEGL---TYFE-SMTHDLGIIP 453
            +A+ LF  MV  S   V P+  T++ IL AC  +G ++ G+    Y E +  +D G + 
Sbjct: 229 REALGLFRQMVSPSSCAVHPNVPTMSTILGACAGAGCLETGIWVHAYIERNRMNDDGYLD 288

Query: 454 NQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQL 513
                 CLI++  + G  D  +   EK P + D + W  +     +HG      ++ D +
Sbjct: 289 R-----CLIDMYCKCGSIDNALQVFEKAPRKKDLFSWTTVICGLAMHGRTTDALRMFDMM 343

Query: 514 IDQN--PQSSATHGLLSSIYSALGKGRLVEK 542
            D    P      G+L    +A   G LV++
Sbjct: 344 QDNGICPDDVTLVGVL----NACAHGGLVDE 370


>gi|414589997|tpg|DAA40568.1| TPA: hypothetical protein ZEAMMB73_314346 [Zea mays]
          Length = 627

 Score =  292 bits (748), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 158/487 (32%), Positives = 265/487 (54%), Gaps = 6/487 (1%)

Query: 90  LSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERD 149
           + N L+ MY KC    DA + F ++  +N  S+ ++L  Y     +  A+ LFD M  R+
Sbjct: 111 VGNTLVDMYAKCARADDAARAFGEMRERNALSWCSLLHAYVVSDHLMLAQELFDQMPNRN 170

Query: 150 VVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHG 209
            V+WNT+++GY++SG   + L  +  +R   ++C+  +   +   C +L        +H 
Sbjct: 171 NVAWNTLLMGYSRSGNANQCLLLFNKMRAEGMACDGATLCILADACTELAHPSAGSAIHK 230

Query: 210 QVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMES 269
             + +G+ +   +S+S++  Y+K   L DA R+F+  + R +++W +++  Y KLG +E 
Sbjct: 231 VAVQSGWSAMAEVSNSLISLYSKFSLLDDAVRIFESMEVRTIVSWNSLIDSYMKLGCVEK 290

Query: 270 ASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILR-IRPNQHTFSSCLCACA 328
           A+ LF  +PE N +SWT +I G  RNG   +AL LF  M+    I P+  TF S L ACA
Sbjct: 291 ATSLFRRVPETNVISWTAMIGGLARNGCADEALALFIVMLAHEHIHPDDFTFGSVLHACA 350

Query: 329 SIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWN 388
           +  SL  G+ VH    R+ F +   V +SL+DMY+KCG +  G  VF    NK+  + WN
Sbjct: 351 TAASLASGRMVHCRAFRSGFAAYLYVANSLMDMYAKCGDVEGGTNVFGAIVNKD-LVSWN 409

Query: 389 TMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHD 448
           TM+     +G+  +A+ ++  M    V PD++T A +L AC HSGL++ G ++FESM   
Sbjct: 410 TMLFGFAINGWANEALVVYDSMKSHEVCPDEVTFAGLLTACNHSGLLEHGESFFESMVSV 469

Query: 449 LGIIPNQEHHACLIELLAQAGCSDQLMNQLE---KMPYEHDSYLWNALHGVCRI-HGNID 504
            GI P  EH +C++++ A++G   + M  L+   +    H+S +  AL   C + H N  
Sbjct: 470 HGIQPKPEHLSCILDMYARSGNITKAMEMLDLYSETIRAHNSDIREALLSACSLEHLNFR 529

Query: 505 MGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIE 564
           + RK ++ ++         + +LS+++ A G+    E+VR  + E   KK    SWIE++
Sbjct: 530 VARKAMEDMVATKSAGDVGYVMLSNLFCAAGQWNQAEQVRIAMAEHGIKKTPGCSWIEVQ 589

Query: 565 NKVHAFS 571
             V  F+
Sbjct: 590 GAVKVFA 596



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 90/352 (25%), Positives = 160/352 (45%), Gaps = 35/352 (9%)

Query: 118 NLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLR 177
            L +  + ++     G    AR +FD M  RD V+WN M+  Y ++G   + L  +    
Sbjct: 11  GLVAATSRIASLGRAGDAASARAMFDAMPRRDAVAWNAMLTAYVRAGQPRDALTLFSR-- 68

Query: 178 RFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELS 237
             + + + FS    L+    L       Q+H +++  G  + + + +++VD YAKC    
Sbjct: 69  --APAPDAFSLTAALSAAAALRSPVAGAQLHARLIRAGLRALLPVGNTLVDMYAKCARAD 126

Query: 238 DARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGL 297
           DA R F E   R+ L+W +++  Y     +  A +LF++MP +N V+W TL+ GY+R+G 
Sbjct: 127 DAARAFGEMRERNALSWCSLLHAYVVSDHLMLAQELFDQMPNRNNVAWNTLLMGYSRSGN 186

Query: 298 GQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSS 357
             + L LF +M    +  +  T      AC  +     G  +H   +++ + +   V +S
Sbjct: 187 ANQCLLLFNKMRAEGMACDGATLCILADACTELAHPSAGSAIHKVAVQSGWSAMAEVSNS 246

Query: 358 LIDMYSKCGCLNDGRQVFD------------LTDN------------------KENSMLW 387
           LI +YSK   L+D  ++F+            L D+                  + N + W
Sbjct: 247 LISLYSKFSLLDDAVRIFESMEVRTIVSWNSLIDSYMKLGCVEKATSLFRRVPETNVISW 306

Query: 388 NTMISALTQHGYDEQAIRLFHDMV-RSSVKPDKITLAVILNACTHSGLVQEG 438
             MI  L ++G  ++A+ LF  M+    + PD  T   +L+AC  +  +  G
Sbjct: 307 TAMIGGLARNGCADEALALFIVMLAHEHIHPDDFTFGSVLHACATAASLASG 358



 Score = 82.0 bits (201), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 59/216 (27%), Positives = 102/216 (47%), Gaps = 36/216 (16%)

Query: 246 TDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELF 305
           T A  ++  T+ ++   + GD  SA  +F+ MP ++ V+W  ++  Y R G  + AL LF
Sbjct: 7   TSAAGLVAATSRIASLGRAGDAASARAMFDAMPRRDAVAWNAMLTAYVRAGQPRDALTLF 66

Query: 306 TRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKC 365
           +R       P+  + ++ L A A++ S   G Q+H  LIR   R+   V ++L+DMY+KC
Sbjct: 67  SR----APAPDAFSLTAALSAAAALRSPVAGAQLHARLIRAGLRALLPVGNTLVDMYAKC 122

Query: 366 G--------------------C-----------LNDGRQVFDLTDNKENSMLWNTMISAL 394
                                C           L   +++FD   N+ N++ WNT++   
Sbjct: 123 ARADDAARAFGEMRERNALSWCSLLHAYVVSDHLMLAQELFDQMPNR-NNVAWNTLLMGY 181

Query: 395 TQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACT 430
           ++ G   Q + LF+ M    +  D  TL ++ +ACT
Sbjct: 182 SRSGNANQCLLLFNKMRAEGMACDGATLCILADACT 217


>gi|296082968|emb|CBI22269.3| unnamed protein product [Vitis vinifera]
          Length = 509

 Score =  292 bits (748), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 157/501 (31%), Positives = 262/501 (52%), Gaps = 26/501 (5%)

Query: 95  ISMYFKCGSDVDARKVFDKIPVKNL----FSYNNMLSGYANLGMMKHARNLFDNMAERDV 150
           IS   +C S    +++  ++   NL    F    +++ ++    M  A N+F+ + + DV
Sbjct: 21  ISDLHRCSSLNQVKQIHAQVLKANLHRESFVGQKLIAAFSLCRQMTLAVNVFNQIQDPDV 80

Query: 151 VSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQ 210
           + +NT+I  + ++         +  ++   +  + F++  +L  C     +++   +H Q
Sbjct: 81  LLYNTLIRAHVRNSEPLLAFSVFFEMQDSGVCADNFTYPFLLKACSGKVWVRVVEMIHAQ 140

Query: 211 VLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESA 270
           V   GF  ++ + +S++D+Y K GEL +ARRLFDE   RD ++W T++ GY K G+M +A
Sbjct: 141 VEKMGFCLDIFVPNSLIDSYFKLGELGEARRLFDEMPERDTVSWNTILDGYVKAGEMNAA 200

Query: 271 SKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASI 330
            +LF +MP +N VSW+T+ AG                     ++ +  T  S L ACA  
Sbjct: 201 FELFEKMPARNVVSWSTMEAG---------------------LKFDDGTVISILSACAVS 239

Query: 331 VSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTM 390
             L  GK+VH  + RT F+ +T V ++LIDMY+KCG L +   +F     K+  + WN +
Sbjct: 240 GLLGLGKRVHASIERTRFKCSTPVSNALIDMYAKCGSLENALSIFHGMVRKD-VVSWNAI 298

Query: 391 ISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLG 450
           I  L  HG+ E+A++LF  M      PDK+T   +L ACTH+G V EGL YF +M  D G
Sbjct: 299 IQGLAMHGHGEKALQLFSRMKGEGFVPDKVTFVGVLCACTHAGFVDEGLHYFHAMERDYG 358

Query: 451 IIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVV 510
           + P  EH+ C+++LL + G   +    +  MP E ++ +W  L G CR+H    +  +V 
Sbjct: 359 VPPEVEHYGCMVDLLGRGGRLKEAFRLVHSMPLEPNAIIWGTLLGACRMHSATGLAEEVF 418

Query: 511 DQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAF 570
           D+L+      S    +LS+IY+A G       +R  +     +K    S IE++++VH F
Sbjct: 419 DRLVKSELSDSGNLSMLSNIYAAAGDWDNFANIRLRMKSTSIQKPSGGSSIEVDDEVHEF 478

Query: 571 SVSDSLHPMRDVLYSVLEQLA 591
           +V D  HP  D +Y  ++ L 
Sbjct: 479 TVFDRSHPKSDRIYKTIDGLG 499



 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 99/381 (25%), Positives = 170/381 (44%), Gaps = 55/381 (14%)

Query: 54  TLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDK 113
           T  F+L+ C+    +++ + +H  ++         F+ N LI  YFK G   +AR++FD+
Sbjct: 117 TYPFLLKACSGKVWVRVVEMIHAQVE-KMGFCLDIFVPNSLIDSYFKLGELGEARRLFDE 175

Query: 114 IPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFY 173
           +P ++  S+N +L GY   G M  A  LF+ M  R+VVSW+TM          E GLKF 
Sbjct: 176 MPERDTVSWNTILDGYVKAGEMNAAFELFEKMPARNVVSWSTM----------EAGLKF- 224

Query: 174 KVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKC 233
                     ++ +   IL+ C     L L ++VH  +  T F  +  +S++++D YAKC
Sbjct: 225 ----------DDGTVISILSACAVSGLLGLGKRVHASIERTRFKCSTPVSNALIDMYAKC 274

Query: 234 GELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYT 293
           G L +A  +F     +DV++W  ++ G A                               
Sbjct: 275 GSLENALSIFHGMVRKDVVSWNAIIQGLAM------------------------------ 304

Query: 294 RNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHG-KQVHGFLIRTNFRSNT 352
            +G G+KAL+LF+RM      P++ TF   LCAC     +  G    H            
Sbjct: 305 -HGHGEKALQLFSRMKGEGFVPDKVTFVGVLCACTHAGFVDEGLHYFHAMERDYGVPPEV 363

Query: 353 IVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVR 412
                ++D+  + G L +  ++      + N+++W T++ A   H     A  +F  +V+
Sbjct: 364 EHYGCMVDLLGRGGRLKEAFRLVHSMPLEPNAIIWGTLLGACRMHSATGLAEEVFDRLVK 423

Query: 413 SSVKPDKITLAVILNACTHSG 433
           S +  D   L+++ N    +G
Sbjct: 424 SELS-DSGNLSMLSNIYAAAG 443



 Score = 72.4 bits (176), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 47/138 (34%), Positives = 73/138 (52%), Gaps = 5/138 (3%)

Query: 45  QRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSD 104
           + G++    T+  IL  CA S  L LGKRVH  ++ T+ K  T  +SN LI MY KCGS 
Sbjct: 219 EAGLKFDDGTVISILSACAVSGLLGLGKRVHASIERTRFKCSTP-VSNALIDMYAKCGSL 277

Query: 105 VDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAER----DVVSWNTMIIGY 160
            +A  +F  +  K++ S+N ++ G A  G  + A  LF  M       D V++  ++   
Sbjct: 278 ENALSIFHGMVRKDVVSWNAIIQGLAMHGHGEKALQLFSRMKGEGFVPDKVTFVGVLCAC 337

Query: 161 AKSGAVEEGLKFYKVLRR 178
             +G V+EGL ++  + R
Sbjct: 338 THAGFVDEGLHYFHAMER 355


>gi|449440243|ref|XP_004137894.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g08820-like [Cucumis sativus]
          Length = 688

 Score =  292 bits (748), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 173/593 (29%), Positives = 294/593 (49%), Gaps = 65/593 (10%)

Query: 3   SNFSPRGINRKNLPNNCLIQSFL-SLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQ 61
           +N+S    ++   PN  L  + +  L+SK    +AI     +   G      T+ F+L+ 
Sbjct: 64  TNYSKLVFSQVKEPNIFLWNTMIRGLVSKDCFDDAIHLYGSMRGGGFLPNNFTIPFVLKA 123

Query: 62  CAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFS 121
           CA    ++LG ++H  L +        F+   L+S+Y KC +  DA KVF          
Sbjct: 124 CARKLDVRLGLKIH-SLLVKAGYDHDVFVKTSLLSLYVKCDNFDDALKVF---------- 172

Query: 122 YNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSI 181
                                D++ +++VVSW  +I GY  SG   E +  +K L    +
Sbjct: 173 ---------------------DDIPDKNVVSWTAIITGYISSGHFREAIGAFKKLLEMGL 211

Query: 182 SCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARR 241
             + FS   +L  C +L +                                 GE  D R 
Sbjct: 212 KPDSFSLVKVLAACARLGD------------------------------CTSGEWID-RY 240

Query: 242 LFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKA 301
           + D    R+V   T+++  Y K G++E A+ +F+ MPEK+ VSW+T+I GY  NGL Q+A
Sbjct: 241 ISDSGMGRNVFVATSLLDMYVKCGNLERANLIFSAMPEKDIVSWSTMIQGYAFNGLPQQA 300

Query: 302 LELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDM 361
           L+LF +M    ++P+ +T    L ACA++ +L  G      + R  F SN ++ ++LIDM
Sbjct: 301 LDLFFQMQSENLKPDCYTMVGVLSACATLGALDLGIWASSLMDRNEFLSNPVLGTALIDM 360

Query: 362 YSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKIT 421
           YSKCG +    ++F     K+  ++WN M+  L+ +G+ +    LF  + +  ++PD+ T
Sbjct: 361 YSKCGSVTQAWEIFTAMKRKDR-VVWNAMMVGLSMNGHAKAVFSLFSLVEKHGIRPDENT 419

Query: 422 LAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKM 481
              +L  CTH G V EG  +F +M     + P+ EH+ C+++LL +AG  ++    +  M
Sbjct: 420 FIGLLCGCTHGGFVNEGRQFFNNMKRVFSLTPSIEHYGCMVDLLGRAGLLNEAHQLINNM 479

Query: 482 PYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVE 541
           P + ++ +W AL G C++H +  +  +V+ +LI+  P +S  +  LS+IYS   +    E
Sbjct: 480 PMKPNAVVWGALLGGCKLHKDTHLAEQVLKKLIELEPWNSGNYVQLSNIYSGNHRWEEAE 539

Query: 542 KVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQM 594
           K+R  + E+Q +K +A SWIEI+  VH F V D  H + + +Y+ L++L  ++
Sbjct: 540 KIRSTMKEQQIQKIRACSWIEIDGIVHEFLVGDKSHWLSEKIYAKLDELGREL 592


>gi|413937268|gb|AFW71819.1| putative pentatricopeptide repeat family protein [Zea mays]
          Length = 830

 Score =  292 bits (748), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 181/643 (28%), Positives = 313/643 (48%), Gaps = 101/643 (15%)

Query: 28  ISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPT 87
           I  G L + +S    +   G+     T + +L   A    + LG+ VH            
Sbjct: 133 IQAGVLLDVMSLFFRMRAEGVWPNPFTFSSVLSMVASQGMVDLGQHVHAQ---------- 182

Query: 88  TFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAE 147
                   S+ F C S V              F  N++++ YA  G+++ AR +F  M  
Sbjct: 183 --------SIKFGCCSTV--------------FVCNSLMNMYAKCGLVEEARVVFCRMET 220

Query: 148 RDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQV 207
           RD+VSWNT++ G   +G   E L+ +   R       E +++ ++ +C  L+ L L RQ+
Sbjct: 221 RDMVSWNTLMAGLVLNGRDLEALQLFHDSRSSITMLTESTYSTVINLCANLKHLGLARQL 280

Query: 208 HGQVLVTGFLS--------------------------------NVVISSSIVDAYAKCGE 235
           H  VL  GF S                                NVV  ++++D   + G+
Sbjct: 281 HSSVLKHGFHSYGNVMTALMDAYNKAGQLDKALDVFLLMSGSQNVVSWTAMIDGCIQNGD 340

Query: 236 LSDARRLF----DETDARDVLTWTTMVS-------------------------------G 260
           +  A  LF    ++  A + LT++T+++                                
Sbjct: 341 IPLAAALFSRMREDGVAPNDLTYSTILTVSEASFPPQIHAQVIKTNYECTPTVGTALMVS 400

Query: 261 YAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTF 320
           Y+KL   E A  +F  + +K+ VSW+ ++  Y + G    A   F +M +  ++PN+ T 
Sbjct: 401 YSKLCSTEEALSIFKMIDQKDVVSWSAMLTCYAQAGDCNGATNAFIKMTMHGLKPNEFTI 460

Query: 321 SSCLCACASIVS-LKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTD 379
           SS + ACAS  + +  G+Q H   I+        V S+L+ MY++ G + + + VF+   
Sbjct: 461 SSAIDACASPAAGVDLGRQFHAISIKHRCHDALCVSSALVSMYARKGSIENAQCVFERQT 520

Query: 380 NKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGL 439
           +++  + WN+M+S   QHGY ++A+ +F  M    +  D +T   ++  C H+GLV+EG 
Sbjct: 521 DRD-LLSWNSMLSGYAQHGYSQKALDVFRQMEVEGIDMDGLTFLSVIMGCAHAGLVEEGQ 579

Query: 440 TYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRI 499
            YF+ M  D GI P  +H+AC+++L ++AG  D+ M+ +E MP+     +W AL G CR+
Sbjct: 580 QYFDLMVRDYGITPTMDHYACMVDLYSRAGKLDETMSLIEGMPFPAGPTIWRALLGACRV 639

Query: 500 HGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAIS 559
           H N+++G+   ++L+   P  SAT+ LLS+IYSA GK +  ++VR+L++ ++ +KE   S
Sbjct: 640 HKNVELGKLAAEKLLSLEPLDSATYVLLSNIYSAAGKWKEKDEVRKLMDTKKVRKEAGCS 699

Query: 560 WIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQMGEDAPSLD 602
           WI+I+NKVH F  SD  HP+ + +Y+ L  +  ++ ++    D
Sbjct: 700 WIQIKNKVHFFIASDKSHPLSEQIYAKLRAMTAKLKQEGYCPD 742



 Score =  135 bits (340), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 91/344 (26%), Positives = 164/344 (47%), Gaps = 46/344 (13%)

Query: 86  PTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNM 145
           P   L   L ++  +CG D    +V   + V    +++++L G          R +F+ M
Sbjct: 69  PDRVLGKQLHALCVRCGHDHGDIRVGTSL-VDMYMNWHSVLDG----------RKVFEGM 117

Query: 146 AERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTR 205
            +R+VV+W +++ GY ++G + + +  +  +R   +  N F+F+ +L++      + L +
Sbjct: 118 LKRNVVTWTSLLTGYIQAGVLLDVMSLFFRMRAEGVWPNPFTFSSVLSMVASQGMVDLGQ 177

Query: 206 QVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLG 265
            VH Q +  G  S V + +S+++ YAKCG + +AR +F   + RD+++W           
Sbjct: 178 HVHAQSIKFGCCSTVFVCNSLMNMYAKCGLVEEARVVFCRMETRDMVSW----------- 226

Query: 266 DMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELF--TRMMILRIRPNQHTFSSC 323
                                TL+AG   NG   +AL+LF  +R  I  +   + T+S+ 
Sbjct: 227 --------------------NTLMAGLVLNGRDLEALQLFHDSRSSITML--TESTYSTV 264

Query: 324 LCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKEN 383
           +  CA++  L   +Q+H  +++  F S   VM++L+D Y+K G L+    VF L    +N
Sbjct: 265 INLCANLKHLGLARQLHSSVLKHGFHSYGNVMTALMDAYNKAGQLDKALDVFLLMSGSQN 324

Query: 384 SMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILN 427
            + W  MI    Q+G    A  LF  M    V P+ +T + IL 
Sbjct: 325 VVSWTAMIDGCIQNGDIPLAAALFSRMREDGVAPNDLTYSTILT 368



 Score =  109 bits (272), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 93/373 (24%), Positives = 162/373 (43%), Gaps = 59/373 (15%)

Query: 155 TMIIGYAKSGAVEEGLK-FYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLV 213
           TM       G V + L  F    RR        +  GI+ IC  + +  L +Q+H   + 
Sbjct: 24  TMPFSTTWQGFVHQALDHFLDAHRRQGRCVGGGALLGIIKICGSVPDRVLGKQLHALCVR 83

Query: 214 TGF-LSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASK 272
            G    ++ + +S+VD Y                     + W +++ G           K
Sbjct: 84  CGHDHGDIRVGTSLVDMY---------------------MNWHSVLDG----------RK 112

Query: 273 LFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVS 332
           +F  M ++N V+WT+L+ GY + G+    + LF RM    + PN  TFSS L   AS   
Sbjct: 113 VFEGMLKRNVVTWTSLLTGYIQAGVLLDVMSLFFRMRAEGVWPNPFTFSSVLSMVASQGM 172

Query: 333 LKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMIS 392
           +  G+ VH   I+    S   V +SL++MY+KCG + + R VF   + ++  + WNT+++
Sbjct: 173 VDLGQHVHAQSIKFGCCSTVFVCNSLMNMYAKCGLVEEARVVFCRMETRD-MVSWNTLMA 231

Query: 393 ALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACT-----------HSGLVQEGL-T 440
            L  +G D +A++LFHD   S     + T + ++N C            HS +++ G  +
Sbjct: 232 GLVLNGRDLEALQLFHDSRSSITMLTESTYSTVINLCANLKHLGLARQLHSSVLKHGFHS 291

Query: 441 YFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIH 500
           Y   MT              L++   +AG  D+ ++    M    +   W A+   C  +
Sbjct: 292 YGNVMT-------------ALMDAYNKAGQLDKALDVFLLMSGSQNVVSWTAMIDGCIQN 338

Query: 501 GNIDMGRKVVDQL 513
           G+I +   +  ++
Sbjct: 339 GDIPLAAALFSRM 351


>gi|297831082|ref|XP_002883423.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297329263|gb|EFH59682.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 679

 Score =  292 bits (748), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 149/485 (30%), Positives = 266/485 (54%), Gaps = 32/485 (6%)

Query: 118 NLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLR 177
           +L++ N +++ Y+ L  +   R +F+ M  +DVVS+NT+I GYA+SG  E+ L+  + + 
Sbjct: 139 DLYTGNALMNMYSKLLGIDSVRKVFELMPRKDVVSYNTVIAGYAQSGMYEDALRMVREMG 198

Query: 178 RFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELS 237
              +  + F+ + +L I  +  ++   +++HG V+  G  S+V I SS+VD Y       
Sbjct: 199 TSDLKPDAFTLSSVLPIFSEYVDVLKGKEIHGYVIRKGIDSDVYIGSSLVDMY------- 251

Query: 238 DARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGL 297
                                   AK   +E + ++F+ +  ++ +SW +L+AGY +NG 
Sbjct: 252 ------------------------AKSARIEDSERVFSHLYRRDSISWNSLVAGYVQNGR 287

Query: 298 GQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSS 357
             +AL LF +M+  ++RP    FSS + ACA + +L  GKQ+HG+++R  F  N  + S+
Sbjct: 288 YNEALRLFRQMVSAKVRPGAVAFSSVIPACAHLATLHLGKQLHGYVLRGGFGRNIFIASA 347

Query: 358 LIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKP 417
           L+DMYSKCG +   R++FD   N  + + W  +I     HG+  +A+ LF +M R  VKP
Sbjct: 348 LVDMYSKCGNIQAARKIFDRM-NLHDEVSWTAIIMGHALHGHGHEAVSLFEEMKRQGVKP 406

Query: 418 DKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQ 477
           +++    +L AC+H GLV E   YF SMT   G+    EH+A + +LL +AG  ++  + 
Sbjct: 407 NQVAFVAVLTACSHVGLVDEAWGYFNSMTKVYGLNQELEHYAAVADLLGRAGKLEEAYDF 466

Query: 478 LEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKG 537
           + KM  E    +W+ L   C +H N+++  KV +++   + ++   + L+ ++Y++ G+ 
Sbjct: 467 ISKMRVEPTGSVWSTLLSSCSVHKNLELAEKVAEKIFTIDSENMGAYVLMCNMYASNGRW 526

Query: 538 RLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQMGED 597
           + + K+R  + ++  +K+ A SWIE++NK H F   D  HP  D +   L+ +  QM ++
Sbjct: 527 KEMAKLRLRVRKKGLRKKPACSWIEMKNKTHGFVSGDRSHPSMDRINEFLKAVMEQMEKE 586

Query: 598 APSLD 602
               D
Sbjct: 587 GYVAD 591



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 85/378 (22%), Positives = 171/378 (45%), Gaps = 34/378 (8%)

Query: 125 MLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCN 184
           ++S Y NL ++  A  +F  +    V++W ++I  +         L  +  +R      +
Sbjct: 45  VISIYTNLKLLHEALLVFKTLESPPVLAWKSVIRCFTDQSLFSRALASFVEMRASGRCPD 104

Query: 185 EFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFD 244
              F  +L  C  + +L+    VHG ++  G   ++   +++++ Y+K   +   R++F+
Sbjct: 105 HNVFPSVLKSCTMMMDLRFGESVHGFIVRLGMDCDLYTGNALMNMYSKLLGIDSVRKVFE 164

Query: 245 ETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALEL 304
               +DV+++ T+++GYA+ G  E A ++  EM   +                       
Sbjct: 165 LMPRKDVVSYNTVIAGYAQSGMYEDALRMVREMGTSD----------------------- 201

Query: 305 FTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSK 364
                   ++P+  T SS L   +  V +  GK++HG++IR    S+  + SSL+DMY+K
Sbjct: 202 --------LKPDAFTLSSVLPIFSEYVDVLKGKEIHGYVIRKGIDSDVYIGSSLVDMYAK 253

Query: 365 CGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAV 424
              + D  +VF     + +S+ WN++++   Q+G   +A+RLF  MV + V+P  +  + 
Sbjct: 254 SARIEDSERVFSHL-YRRDSISWNSLVAGYVQNGRYNEALRLFRQMVSAKVRPGAVAFSS 312

Query: 425 ILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYE 484
           ++ AC H   +  G           G   N    + L+++ ++ G         ++M   
Sbjct: 313 VIPACAHLATLHLG-KQLHGYVLRGGFGRNIFIASALVDMYSKCGNIQAARKIFDRMNL- 370

Query: 485 HDSYLWNALHGVCRIHGN 502
           HD   W A+     +HG+
Sbjct: 371 HDEVSWTAIIMGHALHGH 388



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 84/325 (25%), Positives = 138/325 (42%), Gaps = 75/325 (23%)

Query: 58  ILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVK 117
           +L+ C     L+ G+ VH  + +        +  N L++MY K       RKVF+ +P K
Sbjct: 111 VLKSCTMMMDLRFGESVHGFI-VRLGMDCDLYTGNALMNMYSKLLGIDSVRKVFELMPRK 169

Query: 118 NLFSYNNMLSGYANLGMMKHARNLFDNMA------------------------------- 146
           ++ SYN +++GYA  GM + A  +   M                                
Sbjct: 170 DVVSYNTVIAGYAQSGMYEDALRMVREMGTSDLKPDAFTLSSVLPIFSEYVDVLKGKEIH 229

Query: 147 --------ERDVVSWNTMIIGYAKSGAVEEGLK-FYKVLRRFSISCNEF----------- 186
                   + DV   ++++  YAKS  +E+  + F  + RR SIS N             
Sbjct: 230 GYVIRKGIDSDVYIGSSLVDMYAKSARIEDSERVFSHLYRRDSISWNSLVAGYVQNGRYN 289

Query: 187 -------------------SFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIV 227
                              +F+ ++  C  L  L L +Q+HG VL  GF  N+ I+S++V
Sbjct: 290 EALRLFRQMVSAKVRPGAVAFSSVIPACAHLATLHLGKQLHGYVLRGGFGRNIFIASALV 349

Query: 228 DAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEK----NPV 283
           D Y+KCG +  AR++FD  +  D ++WT ++ G+A  G    A  LF EM  +    N V
Sbjct: 350 DMYSKCGNIQAARKIFDRMNLHDEVSWTAIIMGHALHGHGHEAVSLFEEMKRQGVKPNQV 409

Query: 284 SWTTLIAGYTRNGLGQKALELFTRM 308
           ++  ++   +  GL  +A   F  M
Sbjct: 410 AFVAVLTACSHVGLVDEAWGYFNSM 434



 Score = 92.4 bits (228), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 73/277 (26%), Positives = 135/277 (48%), Gaps = 17/277 (6%)

Query: 237 SDARRL---FDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYT 293
           S A++L   F  T +    + + ++S Y  L  +  A  +F  +     ++W ++I  +T
Sbjct: 22  SQAKQLHAQFIRTQSLSHTSASIVISIYTNLKLLHEALLVFKTLESPPVLAWKSVIRCFT 81

Query: 294 RNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTI 353
              L  +AL  F  M      P+ + F S L +C  ++ L+ G+ VHGF++R     +  
Sbjct: 82  DQSLFSRALASFVEMRASGRCPDHNVFPSVLKSCTMMMDLRFGESVHGFIVRLGMDCDLY 141

Query: 354 VMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRS 413
             ++L++MYSK   ++  R+VF+L   K+  + +NT+I+   Q G  E A+R+  +M  S
Sbjct: 142 TGNALMNMYSKLLGIDSVRKVFELMPRKD-VVSYNTVIAGYAQSGMYEDALRMVREMGTS 200

Query: 414 SVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGC--- 470
            +KPD  TL+ +L   +    V +G      +    GI  +    + L+++ A++     
Sbjct: 201 DLKPDAFTLSSVLPIFSEYVDVLKGKEIHGYVIRK-GIDSDVYIGSSLVDMYAKSARIED 259

Query: 471 SDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGR 507
           S+++ + L    Y  DS  WN+L     + G +  GR
Sbjct: 260 SERVFSHL----YRRDSISWNSL-----VAGYVQNGR 287



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 74/342 (21%), Positives = 144/342 (42%), Gaps = 61/342 (17%)

Query: 12  RKNLPNNCLIQSFLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLG 71
           R ++  N L+  +   +  G+ +EA+     +    +R  A   + ++  CA   +L LG
Sbjct: 270 RDSISWNSLVAGY---VQNGRYNEALRLFRQMVSAKVRPGAVAFSSVIPACAHLATLHLG 326

Query: 72  KRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYAN 131
           K++H ++ L        F+++ L+ MY KCG+                            
Sbjct: 327 KQLHGYV-LRGGFGRNIFIASALVDMYSKCGN---------------------------- 357

Query: 132 LGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGI 191
              ++ AR +FD M   D VSW  +I+G+A  G   E +  ++ ++R  +  N+ +F  +
Sbjct: 358 ---IQAARKIFDRMNLHDEVSWTAIIMGHALHGHGHEAVSLFEEMKRQGVKPNQVAFVAV 414

Query: 192 LTICVKLEELKLTRQVHG----QVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETD 247
           LT C     + L  +  G       V G    +   +++ D   + G+L +A     +  
Sbjct: 415 LTAC---SHVGLVDEAWGYFNSMTKVYGLNQELEHYAAVADLLGRAGKLEEAYDFISKMR 471

Query: 248 ARDVLT-WTTMVSGYAKLGDMESASKLFNE---MPEKNPVSWTTLIAGYTRNGLGQK--A 301
                + W+T++S  +   ++E A K+  +   +  +N  ++  +   Y  NG  ++   
Sbjct: 472 VEPTGSVWSTLLSSCSVHKNLELAEKVAEKIFTIDSENMGAYVLMCNMYASNGRWKEMAK 531

Query: 302 LELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFL 343
           L L  R   LR +P          AC S + +K+  + HGF+
Sbjct: 532 LRLRVRKKGLRKKP----------AC-SWIEMKN--KTHGFV 560


>gi|297741541|emb|CBI32673.3| unnamed protein product [Vitis vinifera]
          Length = 819

 Score =  292 bits (747), Expect = 4e-76,   Method: Compositional matrix adjust.
 Identities = 152/465 (32%), Positives = 264/465 (56%), Gaps = 3/465 (0%)

Query: 124 NMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISC 183
           +++  Y+    +  A  LFD +   DVVS    I  +A+    EE + F+  +   +I  
Sbjct: 331 DIVCSYSASKALWDACKLFDEVPNWDVVSATATIGCFARYHHHEEAIYFFSRMLALNIKP 390

Query: 184 NEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLF 243
           N+FSF  ++     L++L   RQ+H   +  G  SNV + S++VD YAK   +++A++ F
Sbjct: 391 NQFSFGTVIPSSTALQDLNSGRQLHACAIKMGLESNVFVGSAVVDFYAKLTSINEAQKAF 450

Query: 244 DETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALE 303
           ++T   +V+++TT++ GY K    + A  LF +MPE+N VSW  +I+GY++ G  ++A+ 
Sbjct: 451 EDTHEPNVVSYTTLIRGYLKKERFDDALALFRKMPERNVVSWNAMISGYSQMGYNEEAVN 510

Query: 304 LFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYS 363
           LF  M+     PN+ TF   + A A+I +L  G+  HG  ++   + +  + +SL+  Y+
Sbjct: 511 LFVVMLREGTLPNERTFPCAISAVANIAALGMGRSFHGSAVKFLGKFDVFIGNSLVSFYA 570

Query: 364 KCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLA 423
           KCG + +   VF+ T  K+N + WN +I     HG   +AI  F  M  + ++P+ +TL 
Sbjct: 571 KCGSMEESLLVFN-TLPKKNIVSWNALICGYANHGRGMEAIYFFEKMQDTGLRPNSVTLL 629

Query: 424 VILNACTHSGLVQEGLTYF-ESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMP 482
            +L AC HSGLV +G +YF ++   + G++   EHHAC+++LL+++G   +    L ++P
Sbjct: 630 GLLLACNHSGLVDKGYSYFNKARVEEPGLL-TPEHHACMVDLLSRSGRFKEAEKFLHELP 688

Query: 483 YEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEK 542
           +      W AL G CRIH N+++G     +++  +P+  +++ +LS+ +SA G+ + V  
Sbjct: 689 FVPGIGFWKALLGGCRIHSNMELGELAARKILALDPEDVSSYVMLSNAHSAAGRWQSVSM 748

Query: 543 VRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVL 587
           +R+ + E++ K     SWIEI +KVH F   D  H   D +Y VL
Sbjct: 749 IRKEMREKRMKGVPGSSWIEIRSKVHIFVTGDRNHDQHDEIYQVL 793



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 64/227 (28%), Positives = 108/227 (47%), Gaps = 4/227 (1%)

Query: 88  TFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAE 147
            F+ + ++  Y K  S  +A+K F+     N+ SY  ++ GY        A  LF  M E
Sbjct: 427 VFVGSAVVDFYAKLTSINEAQKAFEDTHEPNVVSYTTLIRGYLKKERFDDALALFRKMPE 486

Query: 148 RDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQV 207
           R+VVSWN MI GY++ G  EE +  + V+ R     NE +F   ++    +  L + R  
Sbjct: 487 RNVVSWNAMISGYSQMGYNEEAVNLFVVMLREGTLPNERTFPCAISAVANIAALGMGRSF 546

Query: 208 HGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDM 267
           HG  +      +V I +S+V  YAKCG + ++  +F+    +++++W  ++ GYA  G  
Sbjct: 547 HGSAVKFLGKFDVFIGNSLVSFYAKCGSMEESLLVFNTLPKKNIVSWNALICGYANHGRG 606

Query: 268 ESASKLFNEMPE----KNPVSWTTLIAGYTRNGLGQKALELFTRMMI 310
             A   F +M +     N V+   L+     +GL  K    F +  +
Sbjct: 607 MEAIYFFEKMQDTGLRPNSVTLLGLLLACNHSGLVDKGYSYFNKARV 653



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 81/342 (23%), Positives = 146/342 (42%), Gaps = 79/342 (23%)

Query: 200 ELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVS 259
           +LK ++++HG+ +  G     ++   IV +Y+    L DA +LFDE    DV++ T  + 
Sbjct: 309 QLKESQRIHGRAIKLG---TTILEPDIVCSYSASKALWDACKLFDEVPNWDVVSATATIG 365

Query: 260 GYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHT 319
            +A+    E                               +A+  F+RM+ L I+PNQ +
Sbjct: 366 CFARYHHHE-------------------------------EAIYFFSRMLALNIKPNQFS 394

Query: 320 FSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTD 379
           F + + +  ++  L  G+Q+H   I+    SN  V S+++D Y+K   +N+ ++ F+ T 
Sbjct: 395 FGTVIPSSTALQDLNSGRQLHACAIKMGLESNVFVGSAVVDFYAKLTSINEAQKAFEDTH 454

Query: 380 N------------------------------KENSMLWNTMISALTQHGYDEQAIRLFHD 409
                                          + N + WN MIS  +Q GY+E+A+ LF  
Sbjct: 455 EPNVVSYTTLIRGYLKKERFDDALALFRKMPERNVVSWNAMISGYSQMGYNEEAVNLFVV 514

Query: 410 MVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLG----IIPNQEHHACLIELL 465
           M+R    P++ T    ++A  +   +  G ++  S    LG     I N      L+   
Sbjct: 515 MLREGTLPNERTFPCAISAVANIAALGMGRSFHGSAVKFLGKFDVFIGNS-----LVSFY 569

Query: 466 AQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGR 507
           A+ G  ++ +     +P + +   WNAL  +C   G  + GR
Sbjct: 570 AKCGSMEESLLVFNTLP-KKNIVSWNAL--IC---GYANHGR 605


>gi|356523677|ref|XP_003530462.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g02330-like [Glycine max]
          Length = 852

 Score =  292 bits (747), Expect = 4e-76,   Method: Compositional matrix adjust.
 Identities = 141/477 (29%), Positives = 259/477 (54%), Gaps = 32/477 (6%)

Query: 118 NLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLR 177
           N+   N +L  Y   G +  A  +FD+M  RD VSWN +I  + ++  + + L  +  + 
Sbjct: 374 NICVANTILDMYGKCGALVEACTIFDDMERRDAVSWNAIIAAHEQNEEIVKTLSLFVSML 433

Query: 178 RFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELS 237
           R ++  ++F++  ++  C   + L    ++HG+++ +G   +  + S++VD Y KCG L 
Sbjct: 434 RSTMEPDDFTYGSVVKACAGQQALNYGMEIHGRIVKSGMGLDWFVGSALVDMYGKCGMLM 493

Query: 238 DARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGL 297
           +                               A K+ + + EK  VSW ++I+G++    
Sbjct: 494 E-------------------------------AEKIHDRLEEKTTVSWNSIISGFSSQKQ 522

Query: 298 GQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSS 357
            + A   F++M+ + + P+  T+++ L  CA++ +++ GKQ+H  +++ N  S+  + S+
Sbjct: 523 SENAQRYFSQMLEMGVIPDNFTYATVLDVCANMATIELGKQIHAQILKLNLHSDVYIAST 582

Query: 358 LIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKP 417
           L+DMYSKCG + D R +F+ T  K + + W+ MI A   HG+ EQAI+LF +M   +VKP
Sbjct: 583 LVDMYSKCGNMQDSRLMFEKTP-KRDYVTWSAMICAYAYHGHGEQAIKLFEEMQLLNVKP 641

Query: 418 DKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQ 477
           +      +L AC H G V +GL YF+ M    G+ P+ EH++C+++LL ++   ++ +  
Sbjct: 642 NHTIFISVLRACAHMGYVDKGLHYFQIMQSHYGLDPHMEHYSCMVDLLGRSDQVNEALKL 701

Query: 478 LEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKG 537
           +E M +E D  +W  L   C++ GN+++  K  + L+  +PQ S+ + LL+++Y+ +G  
Sbjct: 702 IESMHFEADDVIWRTLLSNCKMQGNVEVAEKAFNSLLQLDPQDSSAYVLLANVYANVGMW 761

Query: 538 RLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQM 594
             V K+R ++   + KKE   SWIE+ ++VH F V D  HP  + +Y     L  +M
Sbjct: 762 GEVAKIRSIMKNCKLKKEPGCSWIEVRDEVHTFLVGDKAHPRSEEIYEQTHLLVDEM 818



 Score =  209 bits (533), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 115/377 (30%), Positives = 206/377 (54%), Gaps = 33/377 (8%)

Query: 54  TLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDK 113
           T + ILQ+C+  K+L  GK+ H  + +T    PT +++N L+  Y K  +   A KVFD+
Sbjct: 8   TFSHILQKCSNLKALNPGKQAHAQMIVTSF-VPTIYVANCLVQFYCKSSNMNYAFKVFDR 66

Query: 114 IPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFY 173
           +P +++ S+N M+ GYA +G M  A++LFD M ERDVVSWN+++  Y  +G   + ++ +
Sbjct: 67  MPHRDVISWNTMIFGYAEIGNMGFAQSLFDTMPERDVVSWNSLLSCYLHNGVNRKSIEIF 126

Query: 174 KVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKC 233
             +R   I  +  +F+ +L  C  +E+  L  QVH   +  GF ++VV  S++VD     
Sbjct: 127 VRMRSLKIPHDYATFSVVLKACSGIEDYGLGLQVHCLAIQMGFENDVVTGSALVDM---- 182

Query: 234 GELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYT 293
                                      Y+K   ++ A ++F EMPE+N V W+ +IAGY 
Sbjct: 183 ---------------------------YSKCKKLDGAFRIFREMPERNLVCWSAVIAGYV 215

Query: 294 RNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTI 353
           +N    + L+LF  M+ + +  +Q T++S   +CA + + K G Q+HG  ++++F  ++I
Sbjct: 216 QNDRFIEGLKLFKDMLKVGMGVSQSTYASVFRSCAGLSAFKLGTQLHGHALKSDFAYDSI 275

Query: 354 VMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRS 413
           + ++ +DMY+KC  ++D  +VF+   N      +N +I    +     +A+ +F  + R+
Sbjct: 276 IGTATLDMYAKCDRMSDAWKVFNTLPNPPRQS-YNAIIVGYARQDQGLKALEIFQSLQRT 334

Query: 414 SVKPDKITLAVILNACT 430
            +  D+I+L+  L AC+
Sbjct: 335 YLSFDEISLSGALTACS 351



 Score =  172 bits (436), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 84/246 (34%), Positives = 145/246 (58%), Gaps = 1/246 (0%)

Query: 185 EFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFD 244
           +F+F+ IL  C  L+ L   +Q H Q++VT F+  + +++ +V  Y K   ++ A ++FD
Sbjct: 6   KFTFSHILQKCSNLKALNPGKQAHAQMIVTSFVPTIYVANCLVQFYCKSSNMNYAFKVFD 65

Query: 245 ETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALEL 304
               RDV++W TM+ GYA++G+M  A  LF+ MPE++ VSW +L++ Y  NG+ +K++E+
Sbjct: 66  RMPHRDVISWNTMIFGYAEIGNMGFAQSLFDTMPERDVVSWNSLLSCYLHNGVNRKSIEI 125

Query: 305 FTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSK 364
           F RM  L+I  +  TFS  L AC+ I     G QVH   I+  F ++ +  S+L+DMYSK
Sbjct: 126 FVRMRSLKIPHDYATFSVVLKACSGIEDYGLGLQVHCLAIQMGFENDVVTGSALVDMYSK 185

Query: 365 CGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAV 424
           C  L+   ++F     + N + W+ +I+   Q+    + ++LF DM++  +   + T A 
Sbjct: 186 CKKLDGAFRIFREMPER-NLVCWSAVIAGYVQNDRFIEGLKLFKDMLKVGMGVSQSTYAS 244

Query: 425 ILNACT 430
           +  +C 
Sbjct: 245 VFRSCA 250



 Score =  153 bits (386), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 101/398 (25%), Positives = 177/398 (44%), Gaps = 70/398 (17%)

Query: 46  RGIRLPAE--TLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGS 103
           R +++P +  T + +L+ C+  +   LG +VH  L +           + L+ MY KC  
Sbjct: 130 RSLKIPHDYATFSVVLKACSGIEDYGLGLQVHC-LAIQMGFENDVVTGSALVDMYSKCKK 188

Query: 104 DVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKS 163
              A ++F ++P                               ER++V W+ +I GY ++
Sbjct: 189 LDGAFRIFREMP-------------------------------ERNLVCWSAVIAGYVQN 217

Query: 164 GAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVIS 223
               EGLK +K + +  +  ++ ++A +   C  L   KL  Q+HG  L + F  + +I 
Sbjct: 218 DRFIEGLKLFKDMLKVGMGVSQSTYASVFRSCAGLSAFKLGTQLHGHALKSDFAYDSIIG 277

Query: 224 SSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPV 283
           ++ +D YAKC                                 M  A K+FN +P     
Sbjct: 278 TATLDMYAKCDR-------------------------------MSDAWKVFNTLPNPPRQ 306

Query: 284 SWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFL 343
           S+  +I GY R   G KALE+F  +    +  ++ + S  L AC+ I     G Q+HG  
Sbjct: 307 SYNAIIVGYARQDQGLKALEIFQSLQRTYLSFDEISLSGALTACSVIKGHLEGIQLHGLA 366

Query: 344 IRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQA 403
           ++     N  V ++++DMY KCG L +   +FD  + + +++ WN +I+A  Q+    + 
Sbjct: 367 VKCGLGFNICVANTILDMYGKCGALVEACTIFDDME-RRDAVSWNAIIAAHEQNEEIVKT 425

Query: 404 IRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTY 441
           + LF  M+RS+++PD  T   ++ AC      Q+ L Y
Sbjct: 426 LSLFVSMLRSTMEPDDFTYGSVVKACAG----QQALNY 459



 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 94/387 (24%), Positives = 175/387 (45%), Gaps = 71/387 (18%)

Query: 32  QLSEAISSLDLLAQ--RGIRLPAE-TLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTT 88
           Q  E + +L L     R    P + T   +++ CA  ++L  G  +H  + +        
Sbjct: 418 QNEEIVKTLSLFVSMLRSTMEPDDFTYGSVVKACAGQQALNYGMEIHGRI-VKSGMGLDW 476

Query: 89  FLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAER 148
           F+ + L+ MY KCG  ++A K+ D++  K   S+N+++SG+++    ++A+  F  M E 
Sbjct: 477 FVGSALVDMYGKCGMLMEAEKIHDRLEEKTTVSWNSIISGFSSQKQSENAQRYFSQMLEM 536

Query: 149 DVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVH 208
            V+                                + F++A +L +C  +  ++L +Q+H
Sbjct: 537 GVIP-------------------------------DNFTYATVLDVCANMATIELGKQIH 565

Query: 209 GQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDME 268
            Q+L     S+V I+S++VD Y+KCG + D+R +F++T  RD +TW+ M+  YA  G  E
Sbjct: 566 AQILKLNLHSDVYIASTLVDMYSKCGNMQDSRLMFEKTPKRDYVTWSAMICAYAYHGHGE 625

Query: 269 SASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACA 328
            A KLF E                               M +L ++PN   F S L ACA
Sbjct: 626 QAIKLFEE-------------------------------MQLLNVKPNHTIFISVLRACA 654

Query: 329 SIVSLKHGKQVHGFLIRTNFRSNTIVM---SSLIDMYSKCGCLNDGRQVFDLTDNKENSM 385
            +  +  G  +H F I  +       M   S ++D+  +   +N+  ++ +    + + +
Sbjct: 655 HMGYVDKG--LHYFQIMQSHYGLDPHMEHYSCMVDLLGRSDQVNEALKLIESMHFEADDV 712

Query: 386 LWNTMISALTQHGYDEQAIRLFHDMVR 412
           +W T++S     G  E A + F+ +++
Sbjct: 713 IWRTLLSNCKMQGNVEVAEKAFNSLLQ 739



 Score = 72.8 bits (177), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 61/260 (23%), Positives = 120/260 (46%), Gaps = 42/260 (16%)

Query: 29  SKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTT 88
           S+ Q   A      + + G+     T A +L  CA   +++LGK++H  + L        
Sbjct: 519 SQKQSENAQRYFSQMLEMGVIPDNFTYATVLDVCANMATIELGKQIHAQI-LKLNLHSDV 577

Query: 89  FLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAER 148
           ++++ L+ MY KCG+  D+R +F+K P ++  +++ M+  YA  G  + A  LF+ M   
Sbjct: 578 YIASTLVDMYSKCGNMQDSRLMFEKTPKRDYVTWSAMICAYAYHGHGEQAIKLFEEMQLL 637

Query: 149 DVVSWNTMIIGYAKS----GAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLT 204
           +V   +T+ I   ++    G V++GL +++++                            
Sbjct: 638 NVKPNHTIFISVLRACAHMGYVDKGLHYFQIM---------------------------- 669

Query: 205 RQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDET--DARDVLTWTTMVSGYA 262
            Q H      G   ++   S +VD   +  ++++A +L +    +A DV+ W T++S   
Sbjct: 670 -QSH-----YGLDPHMEHYSCMVDLLGRSDQVNEALKLIESMHFEADDVI-WRTLLSNCK 722

Query: 263 KLGDMESASKLFNEMPEKNP 282
             G++E A K FN + + +P
Sbjct: 723 MQGNVEVAEKAFNSLLQLDP 742



 Score = 55.5 bits (132), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 48/208 (23%), Positives = 89/208 (42%), Gaps = 34/208 (16%)

Query: 317 QHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFD 376
           + TFS  L  C+++ +L  GKQ H  +I T+F     V + L+  Y K   +N   +VFD
Sbjct: 6   KFTFSHILQKCSNLKALNPGKQAHAQMIVTSFVPTIYVANCLVQFYCKSSNMNYAFKVFD 65

Query: 377 LTDNKE----NSML--------------------------WNTMISALTQHGYDEQAIRL 406
              +++    N+M+                          WN+++S    +G + ++I +
Sbjct: 66  RMPHRDVISWNTMIFGYAEIGNMGFAQSLFDTMPERDVVSWNSLLSCYLHNGVNRKSIEI 125

Query: 407 FHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTY-FESMTHDLGIIPNQEHHACLIELL 465
           F  M    +  D  T +V+L AC  SG+   GL      +   +G   +    + L+++ 
Sbjct: 126 FVRMRSLKIPHDYATFSVVLKAC--SGIEDYGLGLQVHCLAIQMGFENDVVTGSALVDMY 183

Query: 466 AQAGCSDQLMNQLEKMPYEHDSYLWNAL 493
           ++    D       +MP E +   W+A+
Sbjct: 184 SKCKKLDGAFRIFREMP-ERNLVCWSAV 210


>gi|125546973|gb|EAY92795.1| hypothetical protein OsI_14599 [Oryza sativa Indica Group]
          Length = 530

 Score =  292 bits (747), Expect = 4e-76,   Method: Compositional matrix adjust.
 Identities = 155/476 (32%), Positives = 249/476 (52%), Gaps = 7/476 (1%)

Query: 125 MLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCN 184
           +LS YA LG   HAR LFD M E+ +V    M   +  SG   + +  +  +    +  +
Sbjct: 51  LLSAYAALGSPDHARRLFDEMPEQGLVPRTAMARAHVASGQAAQAIAVFGDMVADGVFPD 110

Query: 185 EFSFAGILTICVKLEELKLTRQ----VHGQVLVTGFLSNVVISSSIVDAYAKCGELSDAR 240
             + A  L  C         R     +H  V+ +G + +V +S+ ++  Y + GEL  +R
Sbjct: 111 NVAVAVALGACHGAGSWTARRNPGKMIHALVVTSGIVPDVFVSTELIRVYGESGELPVSR 170

Query: 241 RLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQK 300
           R+FD+  +R  +TW  M+  YA+ G +++A ++F  MP ++ VSW T++AGY   G  ++
Sbjct: 171 RVFDDMPSRSTITWNAMLHQYARHGKVDTAYEMFLAMPRRDVVSWNTVLAGYCVAGRCRE 230

Query: 301 ALELFTRMMI---LRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSS 357
           AL LF +M+      + PN  T S+ L ACA    L+ G  VH ++ R     +  +   
Sbjct: 231 ALGLFRQMVSPSSCAVHPNVPTMSTILGACAGAGCLETGIWVHAYIERNRMNDDGYLDRC 290

Query: 358 LIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKP 417
           LIDMY KCG +++  QVF+    K++   W T+I  L  HG    A+R+F  M  + + P
Sbjct: 291 LIDMYCKCGSIDNALQVFEKAPRKKDLFSWTTVICGLAMHGRTTDALRMFDMMQDNGICP 350

Query: 418 DKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQ 477
           D +TL  +LNAC H GLV EGL YF SM     I P  EH+ C+I+LL + G   +  + 
Sbjct: 351 DDVTLVGVLNACAHGGLVDEGLGYFYSMEAKFRITPKIEHYGCMIDLLGRIGRLQEAYSM 410

Query: 478 LEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKG 537
           +  MP + ++ +W A    C++HGN+++G+   ++L   +P       +LSS+Y+     
Sbjct: 411 IRTMPMDPNTVIWGAFLSACKVHGNMELGKIAAEELTRLDPDDPWGRVMLSSMYAKAQDW 470

Query: 538 RLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQ 593
             + + R+ +N  Q KK    S IE++ +VH F    S HP    + SVL+ +  Q
Sbjct: 471 IGLARERREMNSMQVKKTPGCSSIELKGEVHEFVAGGSQHPQYAEICSVLQDVEAQ 526



 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 99/387 (25%), Positives = 165/387 (42%), Gaps = 55/387 (14%)

Query: 28  ISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKL----GKRVHLHLKLTQR 83
           ++ GQ ++AI+    +   G+      +A  L  C  + S       GK +H  L +T  
Sbjct: 87  VASGQAAQAIAVFGDMVADGVFPDNVAVAVALGACHGAGSWTARRNPGKMIHA-LVVTSG 145

Query: 84  KTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFD 143
             P  F+S  LI +Y + G    +R+VFD +P ++  ++N ML  YA  G +  A  +F 
Sbjct: 146 IVPDVFVSTELIRVYGESGELPVSRRVFDDMPSRSTITWNAMLHQYARHGKVDTAYEMFL 205

Query: 144 NMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISC----NEFSFAGILTICVKLE 199
            M  RDVVSWNT++ GY  +G   E L  ++ +   S SC    N  + + IL  C    
Sbjct: 206 AMPRRDVVSWNTVLAGYCVAGRCREALGLFRQMVSPS-SCAVHPNVPTMSTILGACAGAG 264

Query: 200 ELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETD-ARDVLTWTTMV 258
            L+    VH  +       +  +   ++D Y KCG + +A ++F++    +D+ +WTT++
Sbjct: 265 CLETGIWVHAYIERNRMNDDGYLDRCLIDMYCKCGSIDNALQVFEKAPRKKDLFSWTTVI 324

Query: 259 SGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQH 318
            G A  G    A ++F+ M +               NG                I P+  
Sbjct: 325 CGLAMHGRTTDALRMFDMMQD---------------NG----------------ICPDDV 353

Query: 319 TFSSCLCACASIVSLKHGKQV-----HGFLIRTNFRSNTIV--MSSLIDMYSKCGCLNDG 371
           T    L ACA      HG  V     + + +   FR    +     +ID+  + G L + 
Sbjct: 354 TLVGVLNACA------HGGLVDEGLGYFYSMEAKFRITPKIEHYGCMIDLLGRIGRLQEA 407

Query: 372 RQVFDLTDNKENSMLWNTMISALTQHG 398
             +        N+++W   +SA   HG
Sbjct: 408 YSMIRTMPMDPNTVIWGAFLSACKVHG 434



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 84/331 (25%), Positives = 142/331 (42%), Gaps = 52/331 (15%)

Query: 255 TTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIR 314
           T ++S YA LG  + A +LF+EMPE+  V  T +   +  +G   +A+ +F  M+   + 
Sbjct: 49  TALLSAYAALGSPDHARRLFDEMPEQGLVPRTAMARAHVASGQAAQAIAVFGDMVADGVF 108

Query: 315 PNQHTFSSCLCACASIVSL----KHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLND 370
           P+    +  L AC    S       GK +H  ++ +    +  V + LI +Y + G L  
Sbjct: 109 PDNVAVAVALGACHGAGSWTARRNPGKMIHALVVTSGIVPDVFVSTELIRVYGESGELPV 168

Query: 371 GRQVFDLTDNKE----NSML--------------------------WNTMISALTQHGYD 400
            R+VFD   ++     N+ML                          WNT+++     G  
Sbjct: 169 SRRVFDDMPSRSTITWNAMLHQYARHGKVDTAYEMFLAMPRRDVVSWNTVLAGYCVAGRC 228

Query: 401 EQAIRLFHDMVRSS---VKPDKITLAVILNACTHSGLVQEGL---TYFE-SMTHDLGIIP 453
            +A+ LF  MV  S   V P+  T++ IL AC  +G ++ G+    Y E +  +D G + 
Sbjct: 229 REALGLFRQMVSPSSCAVHPNVPTMSTILGACAGAGCLETGIWVHAYIERNRMNDDGYLD 288

Query: 454 NQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQL 513
                 CLI++  + G  D  +   EK P + D + W  +     +HG      ++ D +
Sbjct: 289 R-----CLIDMYCKCGSIDNALQVFEKAPRKKDLFSWTTVICGLAMHGRTTDALRMFDMM 343

Query: 514 IDQN--PQSSATHGLLSSIYSALGKGRLVEK 542
            D    P      G+L    +A   G LV++
Sbjct: 344 QDNGICPDDVTLVGVL----NACAHGGLVDE 370


>gi|449442683|ref|XP_004139110.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
 gi|449516005|ref|XP_004165038.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
          Length = 609

 Score =  292 bits (747), Expect = 4e-76,   Method: Compositional matrix adjust.
 Identities = 153/463 (33%), Positives = 254/463 (54%), Gaps = 3/463 (0%)

Query: 135 MKHARNLFDNMAERDVVSWNTMI--IGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGIL 192
           + +A  +FD+  + D+  +NT+I  + ++ + + +   KF  ++R   +  N++SFA   
Sbjct: 50  ISYAHMVFDHFPQPDLFLYNTIIKVLAFSTTSSADSFTKFRSLIREERLVPNQYSFAFAF 109

Query: 193 TICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVL 252
             C     +    QV    +  G  +N+ ++++++  Y     + DAR++FD +  RD+ 
Sbjct: 110 KGCGSGVGVLEGEQVRVHAIKLGLENNLFVTNALIGMYVNLDFVVDARKVFDWSPNRDMY 169

Query: 253 TWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILR 312
           +W  M+SGYA+LG M+ A +LF+EMPEK+ VSWTT+I+G  + G   +AL++F  M+   
Sbjct: 170 SWNIMLSGYARLGKMDEARQLFDEMPEKDVVSWTTMISGCLQVGYFMEALDIFHNMLAKG 229

Query: 313 IRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGR 372
           + PN++T +S L ACA++V+L  G+ +H ++ + N + N  +++ LIDMY+KCG L    
Sbjct: 230 MSPNEYTLASSLAACANLVALDQGRWMHVYIKKNNIQMNERLLAGLIDMYAKCGELEFAS 289

Query: 373 QVFDLTDN-KENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTH 431
           ++F+     K     WN MI     HG  ++AI +F  M    V P+K+T   +LNAC+H
Sbjct: 290 KLFNSNPRLKRKVWPWNAMIGGFAVHGKSKEAIEVFEQMKIEKVSPNKVTFVALLNACSH 349

Query: 432 SGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWN 491
              V+EG  YFESM     + P  EH+ CL++LL +AG   +    +  M    D  +W 
Sbjct: 350 GNRVEEGRYYFESMASHYRVKPELEHYGCLVDLLGRAGRLKEAEEIISSMHLTPDVAIWG 409

Query: 492 ALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQ 551
           AL   C+IH + +MG +V   + + +P     H LL++IYS  G       +R+ I E  
Sbjct: 410 ALLSACKIHKDAEMGERVGKIVKELDPNHLGCHVLLANIYSLTGNWNEARTLREKIAESG 469

Query: 552 FKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQM 594
            KK    S IE+    H F V D  HP    LY  L+++  ++
Sbjct: 470 KKKTPGCSSIELNGMFHQFLVGDRSHPQTKQLYLFLDEMITKL 512



 Score =  157 bits (397), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 106/358 (29%), Positives = 167/358 (46%), Gaps = 39/358 (10%)

Query: 54  TLAFILQQCAESKSLKLGKRVHLH-LKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFD 112
           + AF  + C     +  G++V +H +KL        F++N LI MY      VDARKVFD
Sbjct: 104 SFAFAFKGCGSGVGVLEGEQVRVHAIKLGLENN--LFVTNALIGMYVNLDFVVDARKVFD 161

Query: 113 KIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKF 172
             P ++++S+N MLSGYA LG M  AR LFD M E+DVVSW TMI G  + G   E L  
Sbjct: 162 WSPNRDMYSWNIMLSGYARLGKMDEARQLFDEMPEKDVVSWTTMISGCLQVGYFMEALDI 221

Query: 173 YKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAK 232
           +  +    +S NE++ A  L  C  L  L   R +H  +       N  + + ++D YAK
Sbjct: 222 FHNMLAKGMSPNEYTLASSLAACANLVALDQGRWMHVYIKKNNIQMNERLLAGLIDMYAK 281

Query: 233 CGELSDARRLFDETD--ARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIA 290
           CGEL  A +LF+      R V  W  M+ G+A                            
Sbjct: 282 CGELEFASKLFNSNPRLKRKVWPWNAMIGGFAV--------------------------- 314

Query: 291 GYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRS 350
               +G  ++A+E+F +M I ++ PN+ TF + L AC+    ++ G+     +  +++R 
Sbjct: 315 ----HGKSKEAIEVFEQMKIEKVSPNKVTFVALLNACSHGNRVEEGRYYFESMA-SHYRV 369

Query: 351 NTIV--MSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRL 406
              +     L+D+  + G L +  ++        +  +W  ++SA   H   E   R+
Sbjct: 370 KPELEHYGCLVDLLGRAGRLKEAEEIISSMHLTPDVAIWGALLSACKIHKDAEMGERV 427



 Score = 52.8 bits (125), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 41/150 (27%), Positives = 71/150 (47%), Gaps = 7/150 (4%)

Query: 31  GQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFL 90
           G   EA+     +  +G+     TLA  L  CA   +L  G+ +H+++K    +     L
Sbjct: 213 GYFMEALDIFHNMLAKGMSPNEYTLASSLAACANLVALDQGRWMHVYIKKNNIQMNERLL 272

Query: 91  SNHLISMYFKCGSDVDARKVFDKIP--VKNLFSYNNMLSGYANLGMMKHARNLFDNMAER 148
           +  LI MY KCG    A K+F+  P   + ++ +N M+ G+A  G  K A  +F+ M   
Sbjct: 273 AG-LIDMYAKCGELEFASKLFNSNPRLKRKVWPWNAMIGGFAVHGKSKEAIEVFEQMKIE 331

Query: 149 DV----VSWNTMIIGYAKSGAVEEGLKFYK 174
            V    V++  ++   +    VEEG  +++
Sbjct: 332 KVSPNKVTFVALLNACSHGNRVEEGRYYFE 361


>gi|357483943|ref|XP_003612258.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355513593|gb|AES95216.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 907

 Score =  292 bits (747), Expect = 4e-76,   Method: Compositional matrix adjust.
 Identities = 164/551 (29%), Positives = 301/551 (54%), Gaps = 35/551 (6%)

Query: 73  RVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDV-DARKVFDKIPVKNLFSYNNMLSGYAN 131
           ++ L +K  +R      +S +L+   F    D+  A ++F+KIP  N  S+  ML G+A 
Sbjct: 188 KMGLAMKFFERMAERNVVSWNLMVAGFVNNCDLGSAWELFEKIPDPNAVSWVTMLCGFAR 247

Query: 132 LGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGI 191
            G +  AR LFD M  ++VVSWN MI  Y +   ++E +K +K        C   S+  +
Sbjct: 248 HGKIVEARKLFDRMPCKNVVSWNAMIAAYVQDLQIDEAVKLFK--ETPYKDC--VSWTTM 303

Query: 192 LTICVKLEELKLTRQVHGQV----------LVTGFLSN-----------------VVISS 224
           +   V++ +L   R+V+ Q+          L++G + N                  +  +
Sbjct: 304 INGYVRVGKLDEAREVYNQMPYKDVAAKTALMSGLIQNGRIDEASQVFSQLNKRDAICWN 363

Query: 225 SIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVS 284
           S++  Y + G +S+A  LF +   ++ ++W TM+SGYA+ G+M+ A+++F  M  +N +S
Sbjct: 364 SMIAGYCQSGRMSEALNLFRQMPVKNAVSWNTMISGYAQAGEMDRATEIFEAMGVRNVIS 423

Query: 285 WTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLI 344
           W +LI G+ +NGL   AL+    M     +P+Q TF+  L +CA++ +L+ GKQ+H  ++
Sbjct: 424 WNSLITGFLQNGLYLDALKSLVLMGQEGKKPDQSTFACSLSSCANLAALQVGKQLHELIL 483

Query: 345 RTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAI 404
           ++ + ++  V ++LI MY+KCG +    +VF   +  +  + WN++IS    +GY  +A 
Sbjct: 484 KSGYINDLFVSNALIAMYAKCGGVQSAEKVFKDIEGVD-LISWNSLISGYALNGYANEAF 542

Query: 405 RLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIEL 464
             F  M      PD++T   +L+AC+H+GL  +G+  F+ M     I P  EH++CL++L
Sbjct: 543 WAFEQMSSEGTVPDEVTFIGMLSACSHAGLTNQGVDLFKCMIEGFAIEPLAEHYSCLVDL 602

Query: 465 LAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATH 524
           L + G  ++  N +  M  + ++ LW +L   CR+H N+++G+    +L++  P +++ +
Sbjct: 603 LGRMGRLEEAFNIVRGMKVKANAGLWGSLLAACRVHKNMELGKIAALRLLELEPHNASNY 662

Query: 525 GLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMR-DVL 583
             LS++++  G+   VE++R L+ ER+  K    SWIE++N++  F VSD    +R + +
Sbjct: 663 ITLSNMHAEAGRWEDVERLRVLMRERRAGKLPGCSWIEVQNQIQNF-VSDDPGKLRTESI 721

Query: 584 YSVLEQLAGQM 594
             +L  L+  M
Sbjct: 722 KIILNTLSAHM 732



 Score =  151 bits (382), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 110/403 (27%), Positives = 199/403 (49%), Gaps = 28/403 (6%)

Query: 92  NHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVV 151
           N +++++ K G   DAR++FDK+  +NL S+N M++GY +  M++ A  LFD MAERD  
Sbjct: 52  NSMVTVFAKNGRVSDARQLFDKMSQRNLVSWNTMIAGYLHNNMVEEAHKLFDLMAERDNF 111

Query: 152 SWNTMIIGYAKSGAVEEGLKFYKVL-RRFSISCNEFSFAGILTICVKLEELKLTRQVHGQ 210
           SW  MI  Y + G +E+  + ++++  +   +C     AG      K        +V  +
Sbjct: 112 SWALMITCYTRKGMLEKARELFELVPDKLDTACWNAMIAGY----AKKGRFDDAEKVFEK 167

Query: 211 VLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESA 270
           + V   +S     +S++  Y + G++  A + F+    R+V++W  MV+G+    D+ SA
Sbjct: 168 MPVKDLVS----YNSMLAGYTQNGKMGLAMKFFERMAERNVVSWNLMVAGFVNNCDLGSA 223

Query: 271 SKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASI 330
            +LF ++P+ N VSW T++ G+ R+G   +A +LF RM      P ++  S      A +
Sbjct: 224 WELFEKIPDPNAVSWVTMLCGFARHGKIVEARKLFDRM------PCKNVVSWNAMIAAYV 277

Query: 331 VSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTM 390
             L+  + V   L +     + +  +++I+ Y + G L++ R+V++    K+ +     +
Sbjct: 278 QDLQIDEAVK--LFKETPYKDCVSWTTMINGYVRVGKLDEAREVYNQMPYKDVAAK-TAL 334

Query: 391 ISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLG 450
           +S L Q+G  ++A ++F  +     K D I    ++     SG + E L  F  M     
Sbjct: 335 MSGLIQNGRIDEASQVFSQL----NKRDAICWNSMIAGYCQSGRMSEALNLFRQMP---- 386

Query: 451 IIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNAL 493
            + N      +I   AQAG  D+     E M    +   WN+L
Sbjct: 387 -VKNAVSWNTMISGYAQAGEMDRATEIFEAMGV-RNVISWNSL 427



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 112/442 (25%), Positives = 213/442 (48%), Gaps = 28/442 (6%)

Query: 73  RVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANL 132
           ++++  + T  ++   F  N  I    K G   +A++VF  +  KN  +YN+M++ +A  
Sbjct: 2   KLNIGTRSTLEQSKNVFNQNKKIIYLGKQGKIDEAKRVFSNVIHKNHATYNSMVTVFAKN 61

Query: 133 GMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGIL 192
           G +  AR LFD M++R++VSWNTMI GY  +  VEE  K + ++       + FS+A ++
Sbjct: 62  GRVSDARQLFDKMSQRNLVSWNTMIAGYLHNNMVEEAHKLFDLMAER----DNFSWALMI 117

Query: 193 TICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVL 252
           T   +   L+  R++    LV   L +    ++++  YAK G   DA ++F++   +D++
Sbjct: 118 TCYTRKGMLEKARELFE--LVPDKL-DTACWNAMIAGYAKKGRFDDAEKVFEKMPVKDLV 174

Query: 253 TWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILR 312
           ++ +M++GY + G M  A K F  M E+N VSW  ++AG+  N     A ELF ++    
Sbjct: 175 SYNSMLAGYTQNGKMGLAMKFFERMAERNVVSWNLMVAGFVNNCDLGSAWELFEKI---- 230

Query: 313 IRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFR-SNTIVMSSLIDMYSKCGCLNDG 371
             PN  ++ + LC  A     +HGK V    +       N +  +++I  Y +   +++ 
Sbjct: 231 PDPNAVSWVTMLCGFA-----RHGKIVEARKLFDRMPCKNVVSWNAMIAAYVQDLQIDEA 285

Query: 372 RQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTH 431
            ++F  T  K+  + W TMI+   + G  ++A  +++ M    V         +++    
Sbjct: 286 VKLFKETPYKD-CVSWTTMINGYVRVGKLDEAREVYNQMPYKDVAAK----TALMSGLIQ 340

Query: 432 SGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWN 491
           +G + E    F  +     I  N      +I    Q+G   + +N   +MP + ++  WN
Sbjct: 341 NGRIDEASQVFSQLNKRDAICWNS-----MIAGYCQSGRMSEALNLFRQMPVK-NAVSWN 394

Query: 492 ALHGVCRIHGNIDMGRKVVDQL 513
            +       G +D   ++ + +
Sbjct: 395 TMISGYAQAGEMDRATEIFEAM 416


>gi|125528598|gb|EAY76712.1| hypothetical protein OsI_04667 [Oryza sativa Indica Group]
          Length = 548

 Score =  292 bits (747), Expect = 4e-76,   Method: Compositional matrix adjust.
 Identities = 179/537 (33%), Positives = 275/537 (51%), Gaps = 46/537 (8%)

Query: 36  AISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLI 95
           AI    LL  R   LP   +  +L+  A      LG+ +H    +         +   L+
Sbjct: 41  AIIYSKLLPHRTHHLP--LVIVLLKATASRADPVLGRALHAE-AVKSANAHDRLVGTTLV 97

Query: 96  SMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNT 155
           S+Y KCG   DAR+VFD +  +N  + N ML+GYA  G M  A  LF  M  R  V+W T
Sbjct: 98  SVYCKCGLLADARRVFDGMLDRNAVTCNAMLAGYAAAGDMVSAEALFAGMGSRTPVTWAT 157

Query: 156 MIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTG 215
           +I G+A  G + E  +++                         E + L  Q         
Sbjct: 158 LIRGFAGKGDMAETRRWF-------------------------EAMPLGMQ--------- 183

Query: 216 FLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFN 275
              NVV  +  V AY   G++  AR LF++  AR+   W++MV+G  K G+ + A  +F+
Sbjct: 184 ---NVVTWTVAVQAYVAAGDMETARELFNKMPARNAFVWSSMVTGNFKAGNADEAQAVFD 240

Query: 276 EMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKH 335
           ++P +N V+W  LIAGY + G  +KALE F  M+  +I+P++ T +  L ACA + SL+ 
Sbjct: 241 KIPVRNLVNWNALIAGYAKMGCCEKALEAFHSMLKDKIKPDEFTMAGVLSACAQLGSLEQ 300

Query: 336 GKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALT 395
            ++VH F+I+   R N  VM+ L+DM++KCG L   R +FD    + N+  WN+MISAL+
Sbjct: 301 ARKVHNFIIQHRIRKNQFVMNGLVDMFAKCGDLAFARNIFDNMQWR-NTECWNSMISALS 359

Query: 396 QHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQ 455
            HG   +AIRLF  M  S  KP++ITL  +L ACTH G V EGL  F S     G+    
Sbjct: 360 SHGQSIEAIRLFSKMECSEQKPNEITLLAVLGACTHGGFVDEGLRIF-SKFDIYGVAAAV 418

Query: 456 EHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLID 515
           EH+ CL++LL +AG   +    ++ M  E +  +W +L G CR+HG+ +M   V  ++  
Sbjct: 419 EHYGCLVDLLGRAGRLREAYEIVKNMLVEPNEVIWGSLLGACRVHGDAEMSELVSSEIHQ 478

Query: 516 QNPQSSATHG----LLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVH 568
            + +  +T+     LLS+I ++  +    E++R+ +      K    S +E+E   H
Sbjct: 479 LHSRRVSTNDAEYILLSNIMASSERWEQAERMRRKMALHGVGKTPGCSSVELEITEH 535



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 53/225 (23%), Positives = 104/225 (46%), Gaps = 12/225 (5%)

Query: 10  INRKNLPN-NCLIQSFLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSL 68
           I  +NL N N LI  +  +   G   +A+ +   + +  I+    T+A +L  CA+  SL
Sbjct: 242 IPVRNLVNWNALIAGYAKM---GCCEKALEAFHSMLKDKIKPDEFTMAGVLSACAQLGSL 298

Query: 69  KLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSG 128
           +  ++VH +  +  R     F+ N L+ M+ KCG    AR +FD +  +N   +N+M+S 
Sbjct: 299 EQARKVH-NFIIQHRIRKNQFVMNGLVDMFAKCGDLAFARNIFDNMQWRNTECWNSMISA 357

Query: 129 YANLGMMKHARNLFDNMA----ERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCN 184
            ++ G    A  LF  M     + + ++   ++      G V+EGL+ +     + ++  
Sbjct: 358 LSSHGQSIEAIRLFSKMECSEQKPNEITLLAVLGACTHGGFVDEGLRIFSKFDIYGVAAA 417

Query: 185 EFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDA 229
              +  ++ +  +   L+   ++   +LV     N VI  S++ A
Sbjct: 418 VEHYGCLVDLLGRAGRLREAYEIVKNMLVE---PNEVIWGSLLGA 459


>gi|413934850|gb|AFW69401.1| hypothetical protein ZEAMMB73_719952 [Zea mays]
          Length = 742

 Score =  292 bits (747), Expect = 4e-76,   Method: Compositional matrix adjust.
 Identities = 168/554 (30%), Positives = 297/554 (53%), Gaps = 10/554 (1%)

Query: 47  GIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTT--FLSNHLISMYFKCGSD 104
           G+R  A T  F+ + CA     + G  + LH    +   P+    ++N LI MY   G  
Sbjct: 97  GVRTGAFTFHFVFRCCAAGARARAGLCLMLHAACLRTMLPSAAPLVANPLIHMYASMGLT 156

Query: 105 VDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSG 164
            DAR+ FD+IP K+   +  ++ G    G++  AR L     ER+VVSW ++I GY+++G
Sbjct: 157 DDARRAFDEIPAKDAVVWATVIGGLVRWGLLDEARRLLVQAPERNVVSWTSLIAGYSRAG 216

Query: 165 AVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVH---GQVLVTGFLSNVV 221
              + +  +  +    ++ +E +  G L+ C KL+ L L R +H   GQ  +     N+V
Sbjct: 217 RPADAVYCFNCMLSDGVAPDEVAVIGALSACSKLKNLDLGRLLHLLVGQKRIR-MTDNLV 275

Query: 222 ISSSIVDAYAKCGELSDARRLFDETD-ARDVLTWTTMVSGYAKLGDMESASKLFNEMPEK 280
           ++  ++D YAKCG+++ A+ +FD     +    W  ++ GY KLG ++ A  LF++M  +
Sbjct: 276 VA--LIDMYAKCGDIAQAQAVFDAVGRGQKPEPWNAIIDGYCKLGHVDVARSLFDQMGAR 333

Query: 281 NPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVH 340
           + +++ ++I GY  +G  + AL+LF +M    +R +  T  S L ACAS+ +L HG+ +H
Sbjct: 334 DVITFNSMITGYIHSGRLRDALQLFMQMRRHGMRADNFTVVSLLTACASLGALPHGRALH 393

Query: 341 GFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYD 400
             + +     +  + ++L+DMY KCG +++   VF     ++    W  MI+ L  +G  
Sbjct: 394 ASIEQRIVEEDVYLGTALLDMYMKCGRVDEATAVFHRMGERDVHT-WTAMIAGLAFNGMG 452

Query: 401 EQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHAC 460
           + A+  F  M R   +P  +T   +L AC+HS L+ EG  +F  M     + P  EH+ C
Sbjct: 453 KDALESFCQMKRDGFQPTSVTYIAVLTACSHSSLLDEGRLHFNEMRSLHKLHPQVEHYGC 512

Query: 461 LIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQS 520
           +I+LLA++G  D+ M+ ++ MP + ++ +W ++   CR+H NID+ R   + L+   P+ 
Sbjct: 513 MIDLLARSGLLDEAMHLVQTMPMQPNAVIWGSILSACRVHKNIDLARHAAEHLLKLAPEE 572

Query: 521 SATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMR 580
            A +  L +IY    +    ++VR L+ ER  KK    S I +  +VH F  +D  HP  
Sbjct: 573 DAVYVQLYNIYIDSRQWADAKRVRMLMEERGVKKTAGYSSITVAGQVHKFVANDQSHPWT 632

Query: 581 DVLYSVLEQLAGQM 594
             + +++E++A ++
Sbjct: 633 LEIMAMMEEIACRL 646



 Score =  143 bits (360), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 106/384 (27%), Positives = 183/384 (47%), Gaps = 40/384 (10%)

Query: 21  IQSFLSLIS----KGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHL 76
           + S+ SLI+     G+ ++A+   + +   G+      +   L  C++ K+L LG+ +HL
Sbjct: 202 VVSWTSLIAGYSRAGRPADAVYCFNCMLSDGVAPDEVAVIGALSACSKLKNLDLGRLLHL 261

Query: 77  HLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPV-KNLFSYNNMLSGYANLGMM 135
            +   +R   T  L   LI MY KCG    A+ VFD +   +    +N ++ GY  LG +
Sbjct: 262 LVG-QKRIRMTDNLVVALIDMYAKCGDIAQAQAVFDAVGRGQKPEPWNAIIDGYCKLGHV 320

Query: 136 KHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTIC 195
             AR+LFD M  RDV+++N+MI GY  SG + + L+ +  +RR  +  + F+   +LT C
Sbjct: 321 DVARSLFDQMGARDVITFNSMITGYIHSGRLRDALQLFMQMRRHGMRADNFTVVSLLTAC 380

Query: 196 VKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWT 255
             L  L   R +H  +       +V + ++++D Y KCG + +A  +F     RDV TWT
Sbjct: 381 ASLGALPHGRALHASIEQRIVEEDVYLGTALLDMYMKCGRVDEATAVFHRMGERDVHTWT 440

Query: 256 TMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRP 315
            M                               IAG   NG+G+ ALE F +M     +P
Sbjct: 441 AM-------------------------------IAGLAFNGMGKDALESFCQMKRDGFQP 469

Query: 316 NQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIV--MSSLIDMYSKCGCLNDGRQ 373
              T+ + L AC+    L  G+ +H   +R+  + +  V     +ID+ ++ G L++   
Sbjct: 470 TSVTYIAVLTACSHSSLLDEGR-LHFNEMRSLHKLHPQVEHYGCMIDLLARSGLLDEAMH 528

Query: 374 VFDLTDNKENSMLWNTMISALTQH 397
           +      + N+++W +++SA   H
Sbjct: 529 LVQTMPMQPNAVIWGSILSACRVH 552


>gi|297819260|ref|XP_002877513.1| hypothetical protein ARALYDRAFT_905886 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297323351|gb|EFH53772.1| hypothetical protein ARALYDRAFT_905886 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 657

 Score =  292 bits (747), Expect = 5e-76,   Method: Compositional matrix adjust.
 Identities = 179/589 (30%), Positives = 295/589 (50%), Gaps = 77/589 (13%)

Query: 14  NLPNNCLIQSFLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKR 73
            + NN LIQS   L  +G+L +A   L +L+Q       +T   ++  C    SL  G R
Sbjct: 46  KISNNQLIQS---LCKEGKLKQA---LRVLSQES-SPSQQTYELLILCCGHRSSLSDGLR 98

Query: 74  VHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLG 133
           VH H+           L N         GSD D             F    ++  Y++LG
Sbjct: 99  VHRHI-----------LDN---------GSDQDP------------FLATKLIGMYSDLG 126

Query: 134 MMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILT 193
            + +AR +FD   +R +  WN +      +G  EE L  Y  + R  +  + F++  +L 
Sbjct: 127 SVDYARKVFDKTRKRTIYVWNALFRALTLAGHGEEVLGLYWKMNRIGVESDRFTYTYVLK 186

Query: 194 ICVKLE----ELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDAR 249
            CV  E     L   +++H  +   G+ S+V I +++VD Y                   
Sbjct: 187 ACVASECTADHLTKGKEIHAHLTRRGYNSHVYIMTTLVDMY------------------- 227

Query: 250 DVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMM 309
                       A+ G ++ AS +FN MP +N VSW+ +IA Y +NG   +AL  F  MM
Sbjct: 228 ------------ARFGCVDYASYVFNGMPVRNVVSWSAMIACYAKNGKAFEALRTFREMM 275

Query: 310 ILR--IRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGC 367
                  PN  T  S L ACAS+ +L+ G+ +HG+++R    S   V+S+L+ MY +CG 
Sbjct: 276 TETKDSSPNSVTMVSVLQACASLAALEQGRLIHGYILRRGLDSILPVISALVTMYGRCGK 335

Query: 368 LNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILN 427
           L+ G++VFD   ++ + + WN++IS+   HGY  +AI++F +M+ +   P  +T   +L 
Sbjct: 336 LDVGQRVFDRMHDR-DVVSWNSLISSYGVHGYGRKAIQIFEEMLANGASPTPVTFVSVLG 394

Query: 428 ACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDS 487
           AC+H GLV+EG   FESM  D GI P  EH+AC+++LL +A   D+    ++ M  E   
Sbjct: 395 ACSHEGLVEEGKRLFESMWRDHGIKPQVEHYACMVDLLGRANRLDEAAKMVQDMRTEPGP 454

Query: 488 YLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLI 547
            +W +L G CRIHGN+++  +   +L    P+++  + LL+ IY+       V++V++L+
Sbjct: 455 KVWGSLLGSCRIHGNVELAERASRRLFALEPKNAGNYVLLADIYAEAQMWDEVKRVKKLL 514

Query: 548 NERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQMGE 596
             R  +K     W+E+  K+++F   D  +P+ + +++ L +LA  M E
Sbjct: 515 EHRGLQKLPGRCWMEVRRKMYSFVSMDEFNPLMEQIHAFLVKLAEDMKE 563


>gi|359479564|ref|XP_002274514.2| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 616

 Score =  291 bits (746), Expect = 5e-76,   Method: Compositional matrix adjust.
 Identities = 165/500 (33%), Positives = 277/500 (55%), Gaps = 10/500 (2%)

Query: 87  TTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLS---GYANL----GMMKHAR 139
           T   +N ++S+  KC S  + R++  ++   NL ++   +S    + +L    G + +A 
Sbjct: 2   TAISTNPVVSVLDKCKSLCELRQIHAQMIKTNLLNHQFTVSRLIAFCSLSGVSGGLDYAS 61

Query: 140 NLFDNMAERDVVSWNTMIIGYAK-SGAVEEGLKFYKVLRRFSISCN-EFSFAGILTICVK 197
           ++F  +   +   +  +I G++  S  VE  + + ++L   + S   EFS   +L  C K
Sbjct: 62  SVFSRIQHPNSFIFFALIKGFSDTSNPVESLILYARMLSCLNYSSGVEFSIPSVLKACGK 121

Query: 198 LEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTM 257
           L      RQVHGQVL T    +  + +S+V  Y   GE+  ARR+FD    RDV++W +M
Sbjct: 122 LLAFDEGRQVHGQVLKTHLWFDPFVGNSMVRMYIDFGEIELARRVFDRMPNRDVVSWNSM 181

Query: 258 VSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQ 317
           ++GY K G++E A K+F  M +K+ V+WT++I+ Y +N    KAL+LF  M+ L +RP+ 
Sbjct: 182 IAGYLKAGEIELAKKVFETMSDKDVVTWTSMISAYVQNRCPMKALDLFREMLSLGLRPDG 241

Query: 318 HTFSSCLCACASIVSLKHGKQVHGFLIRTNFR-SNTIVMSSLIDMYSKCGCLNDGRQVFD 376
               S L A A +  ++ GK +H ++       S+  + S+LIDMYSKCG + +   VF 
Sbjct: 242 PAIVSVLSAIADLGFVEEGKWLHAYVSMNKIELSSGFIGSALIDMYSKCGYIENAYHVFR 301

Query: 377 LTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQ 436
              ++ N   WN+MIS L  HG   +A+ +F +M R  ++P++IT   +L+ C+H GLV+
Sbjct: 302 SISHRRNIGDWNSMISGLAIHGLAREALDIFVEMERMDIEPNEITFLGLLSTCSHGGLVE 361

Query: 437 EGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGV 496
           EG  YFESM     I+P  +H+ C+I+L  +AG  +  +  ++ MP+E D   W A+   
Sbjct: 362 EGQFYFESMHEKYKIVPRIQHYGCMIDLFGRAGRLEDALGVIQNMPFEADLLAWKAILSA 421

Query: 497 CRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQ 556
              HG+I++G+    + I+  P  S+++ LLS+IY+  G+   V K+R ++ +R  KK  
Sbjct: 422 SMKHGHIEIGKSAALRAIELAPDDSSSYVLLSNIYAKAGRWDDVAKIRLMMRQRGVKKIA 481

Query: 557 AISWIEIENKVHAFSVSDSL 576
             S + +  KVH F +   L
Sbjct: 482 GCSSMLVNGKVHEFLLGKEL 501



 Score = 62.0 bits (149), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 86/368 (23%), Positives = 158/368 (42%), Gaps = 63/368 (17%)

Query: 37  ISSLDLLAQR---GIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNH 93
           + +LDL  +    G+R     +  +L   A+   ++ GK +H ++ + + +  + F+ + 
Sbjct: 223 MKALDLFREMLSLGLRPDGPAIVSVLSAIADLGFVEEGKWLHAYVSMNKIELSSGFIGSA 282

Query: 94  LISMYFKCGSDVDARKVFDKIP-VKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVS 152
           LI MY KCG   +A  VF  I   +N+  +N+M+SG A  G+ + A ++F  M       
Sbjct: 283 LIDMYSKCGYIENAYHVFRSISHRRNIGDWNSMISGLAIHGLAREALDIFVEM------- 335

Query: 153 WNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVK---LEELKLT-RQVH 208
                                    R  I  NE +F G+L+ C     +EE +     +H
Sbjct: 336 ------------------------ERMDIEPNEITFLGLLSTCSHGGLVEEGQFYFESMH 371

Query: 209 GQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDAR-DVLTWTTMVSGYAKLGDM 267
            +  +   + +      ++D + + G L DA  +        D+L W  ++S   K G +
Sbjct: 372 EKYKIVPRIQHY---GCMIDLFGRAGRLEDALGVIQNMPFEADLLAWKAILSASMKHGHI 428

Query: 268 E---SASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCL 324
           E   SA+    E+   +  S+  L   Y + G      ++  R+M +R R  +      +
Sbjct: 429 EIGKSAALRAIELAPDDSSSYVLLSNIYAKAGRWDDVAKI--RLM-MRQRGVKK-----I 480

Query: 325 CACASIVSLKHGKQVHGFLIRTNFRSNTI--VMSSLIDMYSKC---GCLNDGRQV-FDLT 378
             C+S+  L +GK VH FL+     S+    V++ + ++ S+    G   D  QV  D+ 
Sbjct: 481 AGCSSM--LVNGK-VHEFLLGKELDSSYSGQVLAKIAEVVSRLKLQGYEPDLTQVLLDIE 537

Query: 379 DNKENSML 386
           D  + S+L
Sbjct: 538 DEGKESLL 545


>gi|357132372|ref|XP_003567804.1| PREDICTED: pentatricopeptide repeat-containing protein At4g01030,
           mitochondrial-like [Brachypodium distachyon]
          Length = 851

 Score =  291 bits (746), Expect = 5e-76,   Method: Compositional matrix adjust.
 Identities = 174/597 (29%), Positives = 285/597 (47%), Gaps = 47/597 (7%)

Query: 27  LISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTP 86
           L   G+  EAI +   +  RG+      LA +L  C  + + + GK VH H         
Sbjct: 144 LAEAGEWDEAIGAFREMQARGVAADGYALARVLHACGRAAARREGKAVHAHALKAGLVDA 203

Query: 87  TTFLSNHLISMYFKCGSDVDARK--VFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDN 144
              +   L  MY + G+DV A    +    P     +++ +++    LG++  A  L   
Sbjct: 204 HPLVPGFLAGMYAE-GADVAAATAVLLRATPPPRSVAWDAVVACCVRLGLVDDAMELAGR 262

Query: 145 MA----ERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEE 200
           MA    E  + +WN ++ G A+ G   E L   + +    +  +  + + +L        
Sbjct: 263 MARDGPEPTLATWNAVLSGCARHGRDREALAVLRRMLEQGLWPDATTVSSLLKSVANAGM 322

Query: 201 LKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSG 260
           ++   +VH   L  G + +    +++VD YAKCG L  ARR+FD  + R++ TW ++V+G
Sbjct: 323 VRHGMEVHCFFLRHGLVPDAYTGTALVDMYAKCGRLDCARRVFDTLEHRNLATWNSLVAG 382

Query: 261 YAKLGDMESASKLFNEMP----EKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPN 316
           +A  G  E+A +L   M     + N  +W  LI GY+ NGL  +A+ L  ++    + PN
Sbjct: 383 HAYAGQFEAALELVERMKRNRLDPNVTTWNGLITGYSLNGLSSQAMLLLRQIKAAGLTPN 442

Query: 317 QHTFSSCLC-----------------------------------ACASIVSLKHGKQVHG 341
             +++S +                                    ACA +  LK GK++H 
Sbjct: 443 VVSWTSLISGSCHNGEYEDSFNFFKEMQKDGVQPSLVTMLVLLRACAGLALLKKGKELHC 502

Query: 342 FLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDE 401
           F +R  +  + +V ++LIDMYSK G L   +++F    NK N +  N M++ L  HG   
Sbjct: 503 FALRRAYDCDMVVGTALIDMYSKAGSLTSAKRIFGRIQNK-NLVCCNAMLTGLAVHGQSH 561

Query: 402 QAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACL 461
           +AI LFHD+ RS +KPD IT   +L AC   GL+ EG  YF++M    G++P  E++AC+
Sbjct: 562 EAITLFHDLWRSGLKPDSITFTALLTACRSMGLITEGWEYFDNMETKYGVVPTAENYACM 621

Query: 462 IELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSS 521
           ++LLA++G  D+ M  +E+ P +  + LW AL   C IHGN+D+       L    P +S
Sbjct: 622 VDLLARSGYLDEAMALIERSPVDPGASLWGALLTGCSIHGNLDLAEVAARNLFRLEPYNS 681

Query: 522 ATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHP 578
           A + ++ S+Y         + ++  +  R        SWI+IE  +H F V  S HP
Sbjct: 682 ANYLMIMSLYEHEQMYDEADSLKYAMKARGVNTRPGWSWIQIEQGIHVFEVDGSPHP 738



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 82/335 (24%), Positives = 163/335 (48%), Gaps = 12/335 (3%)

Query: 130 ANLGMMKHARNLFDNMAE----RDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNE 185
           A LG    +R L +   E    +D V WN  +   A++G  +E +  ++ ++   ++ + 
Sbjct: 110 ARLGRGPSSRRLLEEADESEGGKDAVLWNKQVAMLAEAGEWDEAIGAFREMQARGVAADG 169

Query: 186 FSFAGILTICVKLEELKLTRQVHGQVLVTGFL-SNVVISSSIVDAYAKCGELSDARR-LF 243
           ++ A +L  C +    +  + VH   L  G + ++ ++   +   YA+  +++ A   L 
Sbjct: 170 YALARVLHACGRAAARREGKAVHAHALKAGLVDAHPLVPGFLAGMYAEGADVAAATAVLL 229

Query: 244 DETDARDVLTWTTMVSGYAKLG----DMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQ 299
             T     + W  +V+   +LG     ME A ++  + PE    +W  +++G  R+G  +
Sbjct: 230 RATPPPRSVAWDAVVACCVRLGLVDDAMELAGRMARDGPEPTLATWNAVLSGCARHGRDR 289

Query: 300 KALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLI 359
           +AL +  RM+   + P+  T SS L + A+   ++HG +VH F +R     +    ++L+
Sbjct: 290 EALAVLRRMLEQGLWPDATTVSSLLKSVANAGMVRHGMEVHCFFLRHGLVPDAYTGTALV 349

Query: 360 DMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDK 419
           DMY+KCG L+  R+VFD  +++ N   WN++++     G  E A+ L   M R+ + P+ 
Sbjct: 350 DMYAKCGRLDCARRVFDTLEHR-NLATWNSLVAGHAYAGQFEAALELVERMKRNRLDPNV 408

Query: 420 ITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPN 454
            T   ++   + +GL  + +     +    G+ PN
Sbjct: 409 TTWNGLITGYSLNGLSSQAMLLLRQIK-AAGLTPN 442


>gi|225444752|ref|XP_002278169.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 596

 Score =  291 bits (746), Expect = 5e-76,   Method: Compositional matrix adjust.
 Identities = 149/448 (33%), Positives = 254/448 (56%), Gaps = 4/448 (0%)

Query: 150 VVSWNTMIIGYAKS---GAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQ 206
           V  +NT I G++++   G++   +  +  +   S++ N F+F  +   C       L RQ
Sbjct: 54  VFLFNTTIRGFSRARRPGSLLSSVLLFVRMGVLSLAPNNFTFTFLFQGCSNCVAFDLGRQ 113

Query: 207 VHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGD 266
            HG V+   F  +V + +SI+  Y+ CG L+DAR +FDE+   DV++W +M+ G  + G+
Sbjct: 114 FHGMVIKNSFEMDVFVRNSIIRFYSVCGRLNDARWVFDESSELDVVSWNSMIDGCIRNGN 173

Query: 267 MESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCA 326
           +  A  LF++M E+N +SW  +I+GY +NG  ++AL LF  M +L   PN     S L A
Sbjct: 174 ILEALSLFSKMTERNDISWNMMISGYAQNGQPKEALALFREMQMLDQEPNSAILVSVLSA 233

Query: 327 CASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSML 386
           C+ + +L HG  VH ++ +   R ++I+ ++LIDMY+KCG ++   Q F  T  K +   
Sbjct: 234 CSQLGALDHGCWVHCYIGKKCVRVDSILSAALIDMYAKCGSIDLAMQAFS-TSRKRDVSA 292

Query: 387 WNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMT 446
           +   IS L  +G  E+A++LF  M    + PD ++   +L AC+H+G V++G  YF SM+
Sbjct: 293 YTAAISGLAMNGCSEEALQLFEQMKGEGISPDGVSYIAVLCACSHAGWVEKGFHYFASMS 352

Query: 447 HDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMG 506
              GI P  +H+AC+++LL +AG  ++    +  MP + D+ +W AL G CR++GN +MG
Sbjct: 353 DVHGIRPELDHYACMVDLLGRAGLLEEAEKFVASMPIKPDNVIWGALLGACRVYGNAEMG 412

Query: 507 RKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENK 566
           ++V   L++ +      + LLS+IY+   KG   E+VR+ +  R+  +    S IE+   
Sbjct: 413 QRVGSLLVESDQNHDGRYILLSNIYAESMKGEDAEQVRKTMRRRKVDRVPGCSLIEVAGF 472

Query: 567 VHAFSVSDSLHPMRDVLYSVLEQLAGQM 594
           VH F   D  H   + +Y + E++  ++
Sbjct: 473 VHEFFSGDRSHEKTEEIYLMWEEIVKEI 500



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 106/422 (25%), Positives = 182/422 (43%), Gaps = 59/422 (13%)

Query: 4   NFSPRGINRKNLPNNCLIQSFLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCA 63
           N + RG +R   P + L+ S L  +  G LS A ++              T  F+ Q C+
Sbjct: 58  NTTIRGFSRARRPGS-LLSSVLLFVRMGVLSLAPNNF-------------TFTFLFQGCS 103

Query: 64  ESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYN 123
              +  LG++ H  + +        F+ N +I  Y  CG   DAR VFD+    ++ S+N
Sbjct: 104 NCVAFDLGRQFH-GMVIKNSFEMDVFVRNSIIRFYSVCGRLNDARWVFDESSELDVVSWN 162

Query: 124 NMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISC 183
           +M+ G    G +  A +LF  M ER+ +SWN MI GYA++G  +E L  ++ ++      
Sbjct: 163 SMIDGCIRNGNILEALSLFSKMTERNDISWNMMISGYAQNGQPKEALALFREMQMLDQEP 222

Query: 184 NEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLF 243
           N      +L+ C +L  L     VH  +       + ++S++++D YAKCG +  A + F
Sbjct: 223 NSAILVSVLSACSQLGALDHGCWVHCYIGKKCVRVDSILSAALIDMYAKCGSIDLAMQAF 282

Query: 244 DETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALE 303
             +  RDV  +T  +SG A                                NG  ++AL+
Sbjct: 283 STSRKRDVSAYTAAISGLAM-------------------------------NGCSEEALQ 311

Query: 304 LFTRMMILRIRPNQHTFSSCLCACASIVSLKHG-------KQVHGFLIRTNFRSNTIVMS 356
           LF +M    I P+  ++ + LCAC+    ++ G         VHG       R      +
Sbjct: 312 LFEQMKGEGISPDGVSYIAVLCACSHAGWVEKGFHYFASMSDVHG------IRPELDHYA 365

Query: 357 SLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVK 416
            ++D+  + G L +  +       K ++++W  ++ A   +G  E   R+   +V S   
Sbjct: 366 CMVDLLGRAGLLEEAEKFVASMPIKPDNVIWGALLGACRVYGNAEMGQRVGSLLVESDQN 425

Query: 417 PD 418
            D
Sbjct: 426 HD 427


>gi|147795292|emb|CAN64990.1| hypothetical protein VITISV_001772 [Vitis vinifera]
          Length = 891

 Score =  291 bits (746), Expect = 5e-76,   Method: Compositional matrix adjust.
 Identities = 181/570 (31%), Positives = 290/570 (50%), Gaps = 67/570 (11%)

Query: 27  LISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTP 86
           LI  G  ++A+  LD +   GI++   T+  IL  C +   +     +HL++        
Sbjct: 291 LIQNGNAAQALDVLDEMRLEGIKMNFVTVVSILPVCPQLGDISTAMLIHLYV-------- 342

Query: 87  TTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMA 146
                        K G + D            LF  N +++ YA  G ++ AR  F  M 
Sbjct: 343 ------------IKHGLEFD------------LFVSNALINMYAKFGNLEDARKAFQQMF 378

Query: 147 ERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQ 206
             DVVSWN++I  Y ++        F+  ++      +  +   + +I  +  + K +R 
Sbjct: 379 ITDVVSWNSIIAAYEQNDDPVTAHGFFVKMQLNGFQPDLLTLVSLASIVAQSRDCKNSRS 438

Query: 207 VHGQVLVTGFL-SNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLG 265
           VHG ++  G+L  +VVI +++VD YA                               KLG
Sbjct: 439 VHGFIMRRGWLMEDVVIGNAVVDMYA-------------------------------KLG 467

Query: 266 DMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILR-IRPNQHTFSSCL 324
            ++SA K+F  +  K+ +SW TLI GY +NGL  +A+E++  M   + I PNQ T+ S L
Sbjct: 468 LLDSAHKVFEIILVKDVISWNTLITGYAQNGLASEAIEVYKMMEECKEIIPNQGTWVSIL 527

Query: 325 CACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENS 384
            A A + +L+ G ++HG +I+TN   +  V + LID+Y KCG L D   +F     +E+S
Sbjct: 528 PAYAHVGALQQGMRIHGRVIKTNLHLDVFVATCLIDVYGKCGRLVDAMSLFYQVP-QESS 586

Query: 385 MLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFES 444
           + WN +IS    HG+ E+ ++LF +M+   VKPD +T   +L+AC+HSG V+EG   F  
Sbjct: 587 VTWNAIISCHGIHGHAEKTLKLFGEMLDEGVKPDHVTFVSLLSACSHSGFVEEGKWCFRL 646

Query: 445 MTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNID 504
           M  + GI P+ +H+ C+++LL +AG  +     ++ MP + D+ +W AL G CRIHGNI+
Sbjct: 647 M-QEYGIKPSLKHYGCMVDLLGRAGYLEMAYGFIKDMPLQPDASIWGALLGACRIHGNIE 705

Query: 505 MGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIE 564
           +G+   D+L + + ++   + LLS+IY+ +GK   V+KVR L  ER  KK    S IE+ 
Sbjct: 706 LGKFASDRLFEVDSKNVGYYVLLSNIYANVGKWEGVDKVRSLARERGLKKTPGWSTIEVN 765

Query: 565 NKVHAFSVSDSLHPMRDVLYSVLEQLAGQM 594
            KV  F   +  HP    +Y  L  L  +M
Sbjct: 766 RKVDVFYTGNQSHPKCKEIYEELRVLTAKM 795



 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 117/453 (25%), Positives = 210/453 (46%), Gaps = 52/453 (11%)

Query: 101 CGSDVDARKV----FDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTM 156
           CG+ VD R++    F      N+F   +++  Y+  G    AR+LFD+M  RD+ SWN M
Sbjct: 228 CGTLVDGRRIHCWAFKLGFQWNVFVAASLIHMYSRFGFTGIARSLFDDMPFRDMGSWNAM 287

Query: 157 IIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGF 216
           I G  ++G   + L     +R   I  N  +   IL +C +L ++     +H  V+  G 
Sbjct: 288 ISGLIQNGNAAQALDVLDEMRLEGIKMNFVTVVSILPVCPQLGDISTAMLIHLYVIKHGL 347

Query: 217 LSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNE 276
             ++ +S+++++ YAK G L DAR+ F +    DV++W ++++ Y +  D          
Sbjct: 348 EFDLFVSNALINMYAKFGNLEDARKAFQQMFITDVVSWNSIIAAYEQNDD---------- 397

Query: 277 MPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHG 336
                PV+                A   F +M +   +P+  T  S     A     K+ 
Sbjct: 398 -----PVT----------------AHGFFVKMQLNGFQPDLLTLVSLASIVAQSRDCKNS 436

Query: 337 KQVHGFLIRTNF-RSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALT 395
           + VHGF++R  +   + ++ ++++DMY+K G L+   +VF++   K+  + WNT+I+   
Sbjct: 437 RSVHGFIMRRGWLMEDVVIGNAVVDMYAKLGLLDSAHKVFEIILVKD-VISWNTLITGYA 495

Query: 396 QHGYDEQAIRLFHDMVR-SSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPN 454
           Q+G   +AI ++  M     + P++ T   IL A  H G +Q+G+           +I  
Sbjct: 496 QNGLASEAIEVYKMMEECKEIIPNQGTWVSILPAYAHVGALQQGMRIHGR------VIKT 549

Query: 455 QEH-----HACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKV 509
             H       CLI++  + G     M+   ++P E  S  WNA+     IHG+ +   K+
Sbjct: 550 NLHLDVFVATCLIDVYGKCGRLVDAMSLFYQVPQE-SSVTWNAIISCHGIHGHAEKTLKL 608

Query: 510 VDQLIDQNPQSSATHGLLSSIYSALGKGRLVEK 542
             +++D+  +    H    S+ SA      VE+
Sbjct: 609 FGEMLDEGVKPD--HVTFVSLLSACSHSGFVEE 639



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 86/321 (26%), Positives = 150/321 (46%), Gaps = 42/321 (13%)

Query: 116 VKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLK-FYK 174
           V+++F    +++ YANLG +  +R  FD + ++DV +WN+MI  Y  +G   E +  FY+
Sbjct: 148 VQSIFISTRLVNLYANLGDVSLSRCTFDQIPQKDVYTWNSMISAYVHNGHFHEAIGCFYQ 207

Query: 175 VLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCG 234
           +L    I  + ++F  +L  C  L +    R++H      GF  NV +++S++  Y++ G
Sbjct: 208 LLLVSEIRPDFYTFPPVLKACGTLVD---GRRIHCWAFKLGFQWNVFVAASLIHMYSRFG 264

Query: 235 ELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTR 294
               AR LFD+   RD+ +W  M+S                               G  +
Sbjct: 265 FTGIARSLFDDMPFRDMGSWNAMIS-------------------------------GLIQ 293

Query: 295 NGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIV 354
           NG   +AL++   M +  I+ N  T  S L  C  +  +     +H ++I+     +  V
Sbjct: 294 NGNAAQALDVLDEMRLEGIKMNFVTVVSILPVCPQLGDISTAMLIHLYVIKHGLEFDLFV 353

Query: 355 MSSLIDMYSKCGCLNDGRQVFD---LTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMV 411
            ++LI+MY+K G L D R+ F    +TD     + WN++I+A  Q+     A   F  M 
Sbjct: 354 SNALINMYAKFGNLEDARKAFQQMFITD----VVSWNSIIAAYEQNDDPVTAHGFFVKMQ 409

Query: 412 RSSVKPDKITLAVILNACTHS 432
            +  +PD +TL  + +    S
Sbjct: 410 LNGFQPDLLTLVSLASIVAQS 430



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 65/216 (30%), Positives = 112/216 (51%), Gaps = 9/216 (4%)

Query: 219 NVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMP 278
           N +  SS    +AKC        L      + +   T +V+ YA LGD+  +   F+++P
Sbjct: 123 NFLFDSSTKTPFAKCLH----ALLVVAGKVQSIFISTRLVNLYANLGDVSLSRCTFDQIP 178

Query: 279 EKNPVSWTTLIAGYTRNGLGQKALELFTRMMIL-RIRPNQHTFSSCLCACASIVSLKHGK 337
           +K+  +W ++I+ Y  NG   +A+  F +++++  IRP+ +TF   L AC ++V    G+
Sbjct: 179 QKDVYTWNSMISAYVHNGHFHEAIGCFYQLLLVSEIRPDFYTFPPVLKACGTLVD---GR 235

Query: 338 QVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQH 397
           ++H +  +  F+ N  V +SLI MYS+ G     R +FD    ++    WN MIS L Q+
Sbjct: 236 RIHCWAFKLGFQWNVFVAASLIHMYSRFGFTGIARSLFDDMPFRDMGS-WNAMISGLIQN 294

Query: 398 GYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSG 433
           G   QA+ +  +M    +K + +T+  IL  C   G
Sbjct: 295 GNAAQALDVLDEMRLEGIKMNFVTVVSILPVCPQLG 330


>gi|242096002|ref|XP_002438491.1| hypothetical protein SORBIDRAFT_10g020540 [Sorghum bicolor]
 gi|241916714|gb|EER89858.1| hypothetical protein SORBIDRAFT_10g020540 [Sorghum bicolor]
          Length = 794

 Score =  291 bits (746), Expect = 5e-76,   Method: Compositional matrix adjust.
 Identities = 173/572 (30%), Positives = 280/572 (48%), Gaps = 48/572 (8%)

Query: 27  LISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTP 86
           L+  G+  EAI  L  +  RG+R    T A  L  C++ + L LG+ +H ++        
Sbjct: 244 LVQSGRCGEAIEVLYDMVARGVRPDGVTFASALPACSQLEMLSLGREMHAYVLKDADLAA 303

Query: 87  TTFLSNHLISMYFKCGSDVDARKVFDKIPV--KNLFSYNNMLSGYANLGMMKHARNLFDN 144
            +F+++ L+ MY        AR VFD +P   + L  +N M+ GYA  G+ + A  LF  
Sbjct: 304 NSFVASALVDMYASHERVGAARLVFDMVPAGERQLGLWNAMICGYAQAGLDEDALELFAR 363

Query: 145 MAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLT 204
           M                ++G V                 +E + AG+L  C + E     
Sbjct: 364 ME--------------TEAGVVP----------------SETTIAGVLPSCARSETFAGK 393

Query: 205 RQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKL 264
             VHG V+  G   N  + ++++D YA+ G++  AR +F   + RDV++W T+++G    
Sbjct: 394 EAVHGYVVKRGMADNPFVQNALMDLYARLGDMDAARWIFATIEPRDVVSWNTLITGCVVQ 453

Query: 265 GDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCL 324
           G +  A +L  EM ++            T +G+     E         + PN  T  + L
Sbjct: 454 GHIRDAFQLVREMQQQG-----RFTDAATEDGIAGADEE--------PVVPNNITLMTLL 500

Query: 325 CACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENS 384
             CA + +   GK++HG+ +R    S+  V S+L+DMY+KCGCL   R VFD    + N 
Sbjct: 501 PGCAMLAAPARGKEIHGYAVRHALDSDVAVGSALVDMYAKCGCLALSRAVFDRLPRR-NV 559

Query: 385 MLWNTMISALTQHGYDEQAIRLFHDMVRS-SVKPDKITLAVILNACTHSGLVQEGLTYFE 443
           + WN +I A   HG  ++AI LF  MV S   KP+++T    L AC+HSG+V  GL  F 
Sbjct: 560 ITWNVLIMAYGMHGLGDEAIALFDRMVASDEAKPNEVTFIAALAACSHSGMVDRGLEMFR 619

Query: 444 SMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKM-PYEHDSYLWNALHGVCRIHGN 502
           SM  + G+ P  + HAC +++L +AG  D+    +  M P E     W++  G CR+H N
Sbjct: 620 SMKRNHGVEPTPDLHACAVDILGRAGRLDEAYRIISSMEPGEQQVSAWSSFLGACRLHRN 679

Query: 503 IDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIE 562
           + +G    ++L +  P  ++ + LL +IYSA G      +VR  + +R   KE   SWIE
Sbjct: 680 VALGEIAAERLFELEPDEASHYVLLCNIYSAAGLWEKSSEVRSRMRQRGVSKEPGCSWIE 739

Query: 563 IENKVHAFSVSDSLHPMRDVLYSVLEQLAGQM 594
           ++  +H F   +S HP   ++++ ++ L  +M
Sbjct: 740 LDGVIHRFMAGESAHPESTLVHAHMDALWERM 771



 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 109/428 (25%), Positives = 189/428 (44%), Gaps = 73/428 (17%)

Query: 120 FSYNNMLSGYANLGMMKHARNLFDNMAERDV-----VSWNTMIIGYAKSGAVEEGLK-FY 173
           F++N +LS YA LG++  A+ LF ++   DV     V+WNTM+    +SG   E ++  Y
Sbjct: 199 FAFNALLSMYARLGLVDDAQTLFGSVGATDVPGGGVVTWNTMVSLLVQSGRCGEAIEVLY 258

Query: 174 KVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFL-SNVVISSSIVDAYAK 232
            ++ R  +  +  +FA  L  C +LE L L R++H  VL    L +N  ++S++VD YA 
Sbjct: 259 DMVAR-GVRPDGVTFASALPACSQLEMLSLGREMHAYVLKDADLAANSFVASALVDMYAS 317

Query: 233 CGELSDARRLFDETDA--RDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIA 290
              +  AR +FD   A  R +  W  M+ GYA+ G                         
Sbjct: 318 HERVGAARLVFDMVPAGERQLGLWNAMICGYAQAG------------------------- 352

Query: 291 GYTRNGLGQKALELFTRMMI-LRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFR 349
                 L + ALELF RM     + P++ T +  L +CA   +    + VHG++++    
Sbjct: 353 ------LDEDALELFARMETEAGVVPSETTIAGVLPSCARSETFAGKEAVHGYVVKRGMA 406

Query: 350 SNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHD 409
            N  V ++L+D+Y++ G ++  R +F  T    + + WNT+I+     G+   A +L  +
Sbjct: 407 DNPFVQNALMDLYARLGDMDAARWIF-ATIEPRDVVSWNTLITGCVVQGHIRDAFQLVRE 465

Query: 410 MVRSS------------------VKPDKITLAVILNACT-----HSGLVQEGLTYFESMT 446
           M +                    V P+ ITL  +L  C        G    G     ++ 
Sbjct: 466 MQQQGRFTDAATEDGIAGADEEPVVPNNITLMTLLPGCAMLAAPARGKEIHGYAVRHALD 525

Query: 447 HDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMG 506
            D+ +       + L+++ A+ GC        +++P   +   WN L     +HG  D  
Sbjct: 526 SDVAV------GSALVDMYAKCGCLALSRAVFDRLP-RRNVITWNVLIMAYGMHGLGDEA 578

Query: 507 RKVVDQLI 514
             + D+++
Sbjct: 579 IALFDRMV 586



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 119/475 (25%), Positives = 205/475 (43%), Gaps = 76/475 (16%)

Query: 57  FILQQCAES----KSLKLGKRVH-LHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVF 111
           F L   A+S    +SL   + +H   L+      PT  +SN L++ Y +CG    A  +F
Sbjct: 58  FALPPAAKSAAALRSLTAVRSIHGAALRHDLLDGPTPAVSNALLTAYARCGDLTAALALF 117

Query: 112 DKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLK 171
           D +P ++  ++N+++   A L + +      D +  RD+     ++ G+           
Sbjct: 118 DAMPSRDAVTFNSLI---AALCLFRRWLPALDAL--RDM-----LLEGH----------- 156

Query: 172 FYKVLRRFSISCNEFSFAGILTICVKL-EELKLTRQVHGQVLVTGFLSN--VVISSSIVD 228
                         F+   +L  C  L E+L+L R+ H   L  GFL        ++++ 
Sbjct: 157 ----------PLTSFTLVSVLLACSHLAEDLRLGREAHAFALKNGFLDGDERFAFNALLS 206

Query: 229 AYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTL 288
            YA+ G + DA+ LF    A DV                          P    V+W T+
Sbjct: 207 MYARLGLVDDAQTLFGSVGATDV--------------------------PGGGVVTWNTM 240

Query: 289 IAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIR-TN 347
           ++   ++G   +A+E+   M+   +RP+  TF+S L AC+ +  L  G+++H ++++  +
Sbjct: 241 VSLLVQSGRCGEAIEVLYDMVARGVRPDGVTFASALPACSQLEMLSLGREMHAYVLKDAD 300

Query: 348 FRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSM-LWNTMISALTQHGYDEQAIRL 406
             +N+ V S+L+DMY+    +   R VFD+    E  + LWN MI    Q G DE A+ L
Sbjct: 301 LAANSFVASALVDMYASHERVGAARLVFDMVPAGERQLGLWNAMICGYAQAGLDEDALEL 360

Query: 407 FHDM-VRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELL 465
           F  M   + V P + T+A +L +C  S     G           G+  N      L++L 
Sbjct: 361 FARMETEAGVVPSETTIAGVLPSCARSETFA-GKEAVHGYVVKRGMADNPFVQNALMDLY 419

Query: 466 AQAGCSDQ---LMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQN 517
           A+ G  D    +   +E      D   WN L   C + G+I    ++V ++  Q 
Sbjct: 420 ARLGDMDAARWIFATIEP----RDVVSWNTLITGCVVQGHIRDAFQLVREMQQQG 470


>gi|297738694|emb|CBI27939.3| unnamed protein product [Vitis vinifera]
          Length = 764

 Score =  291 bits (745), Expect = 6e-76,   Method: Compositional matrix adjust.
 Identities = 159/525 (30%), Positives = 269/525 (51%), Gaps = 65/525 (12%)

Query: 54  TLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDK 113
           T   IL+ CA    L  GK +H  + +     P + L N L+++Y KC            
Sbjct: 193 TFISILKTCASKGDLNEGKAIHGQV-IKSGINPDSHLWNSLVNVYAKC------------ 239

Query: 114 IPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFY 173
                         G AN     +A  +F  + ERDVVSW  +I G+   G    GL+ +
Sbjct: 240 --------------GSAN-----YACKVFGEIPERDVVSWTALITGFVAEG-YGSGLRIF 279

Query: 174 KVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKC 233
             +     + N ++F  IL  C  L ++ L +QVH Q++      N  + +++VD YAK 
Sbjct: 280 NQMLAEGFNPNMYTFISILRSCSSLSDVDLGKQVHAQIVKNSLDGNDFVGTALVDMYAK- 338

Query: 234 GELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYT 293
                  R                         +E A  +FN + +++  +WT ++AGY 
Sbjct: 339 ------NRF------------------------LEDAETIFNRLIKRDLFAWTVIVAGYA 368

Query: 294 RNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTI 353
           ++G G+KA++ F +M    ++PN+ T +S L  C+ I +L  G+Q+H   I+     +  
Sbjct: 369 QDGQGEKAVKCFIQMQREGVKPNEFTLASSLSGCSRIATLDSGRQLHSMAIKAGQSGDMF 428

Query: 354 VMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRS 413
           V S+L+DMY+KCGC+ D   VFD   +++ ++ WNT+I   +QHG   +A++ F  M+  
Sbjct: 429 VASALVDMYAKCGCVEDAEVVFDGLVSRD-TVSWNTIICGYSQHGQGGKALKAFEAMLDE 487

Query: 414 SVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQ 473
              PD++T   +L+AC+H GL++EG  +F S++   GI P  EH+AC++++L +AG   +
Sbjct: 488 GTVPDEVTFIGVLSACSHMGLIEEGKKHFNSLSKIYGITPTIEHYACMVDILGRAGKFHE 547

Query: 474 LMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSA 533
           + + +E+M    +  +W  + G C++HGNI+ G +   +L +  P+  + + LLS++++A
Sbjct: 548 VESFIEEMKLTSNVLIWETVLGACKMHGNIEFGERAAMKLFELEPEIDSNYILLSNMFAA 607

Query: 534 LGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHP 578
            G    V  VR L++ R  KKE   SW+E+  +VH F   D  HP
Sbjct: 608 KGMWDDVTNVRALMSTRGVKKEPGCSWVEVNGQVHVFLSHDGSHP 652



 Score =  125 bits (313), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 102/479 (21%), Positives = 196/479 (40%), Gaps = 74/479 (15%)

Query: 122 YNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSI 181
           ++++++ Y     ++ AR + + M  +DV  WN  +        ++E ++ + ++R   I
Sbjct: 27  WSSLVNVYVKCESLQCARQVLEEMPIQDVQQWNQKLSSANSPYPLQEAVQLFYLMRHTRI 86

Query: 182 SCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARR 241
             N+F FA +++    L +      +H  V   GF S+++IS++ V  Y K   + +  +
Sbjct: 87  RLNQFIFASLISAAASLGDNHYGESIHACVCKYGFESDILISNAFVTMYMKTQSVENGWQ 146

Query: 242 LFDETDARDVLTWTTMVSGY-----------------------------------AKLGD 266
            F      ++ +   ++SG+                                   A  GD
Sbjct: 147 FFKAMMIENLASRNNLLSGFCDTETCDQGPRILIQLLVEGFEPNMYTFISILKTCASKGD 206

Query: 267 MESASKLFNEMPEK--NPVS--WTTLIAGYTRNGLGQKA--------------------- 301
           +     +  ++ +   NP S  W +L+  Y + G    A                     
Sbjct: 207 LNEGKAIHGQVIKSGINPDSHLWNSLVNVYAKCGSANYACKVFGEIPERDVVSWTALITG 266

Query: 302 ---------LELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNT 352
                    L +F +M+     PN +TF S L +C+S+  +  GKQVH  +++ +   N 
Sbjct: 267 FVAEGYGSGLRIFNQMLAEGFNPNMYTFISILRSCSSLSDVDLGKQVHAQIVKNSLDGND 326

Query: 353 IVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVR 412
            V ++L+DMY+K   L D   +F+    K +   W  +++   Q G  E+A++ F  M R
Sbjct: 327 FVGTALVDMYAKNRFLEDAETIFNRLI-KRDLFAWTVIVAGYAQDGQGEKAVKCFIQMQR 385

Query: 413 SSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSD 472
             VKP++ TLA  L+ C+    +  G     SM    G   +    + L+++ A+ GC +
Sbjct: 386 EGVKPNEFTLASSLSGCSRIATLDSG-RQLHSMAIKAGQSGDMFVASALVDMYAKCGCVE 444

Query: 473 QLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQN--PQSSATHGLLSS 529
                 + +    D+  WN +      HG      K  + ++D+   P      G+LS+
Sbjct: 445 DAEVVFDGL-VSRDTVSWNTIICGYSQHGQGGKALKAFEAMLDEGTVPDEVTFIGVLSA 502



 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 58/258 (22%), Positives = 104/258 (40%), Gaps = 44/258 (17%)

Query: 31  GQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFL 90
           GQ  +A+     + + G++    TLA  L  C+   +L  G+++H  + +   ++   F+
Sbjct: 371 GQGEKAVKCFIQMQREGVKPNEFTLASSLSGCSRIATLDSGRQLH-SMAIKAGQSGDMFV 429

Query: 91  SNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDV 150
           ++ L+ MY KCG   DA  VFD +  ++  S+N ++ GY+  G    A   F+ M +   
Sbjct: 430 ASALVDMYAKCGCVEDAEVVFDGLVSRDTVSWNTIICGYSQHGQGGKALKAFEAMLDEGT 489

Query: 151 VSWNTMIIGYAKS----GAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQ 206
           V      IG   +    G +EEG K +  L +                            
Sbjct: 490 VPDEVTFIGVLSACSHMGLIEEGKKHFNSLSK---------------------------- 521

Query: 207 VHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETD-ARDVLTWTTMVSGYAKLG 265
                 + G    +   + +VD   + G+  +     +E     +VL W T++      G
Sbjct: 522 ------IYGITPTIEHYACMVDILGRAGKFHEVESFIEEMKLTSNVLIWETVLGACKMHG 575

Query: 266 DME----SASKLFNEMPE 279
           ++E    +A KLF   PE
Sbjct: 576 NIEFGERAAMKLFELEPE 593


>gi|147859488|emb|CAN83542.1| hypothetical protein VITISV_021357 [Vitis vinifera]
          Length = 795

 Score =  291 bits (745), Expect = 6e-76,   Method: Compositional matrix adjust.
 Identities = 151/451 (33%), Positives = 257/451 (56%), Gaps = 3/451 (0%)

Query: 138 ARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVK 197
           A  LFD +   DVVS    I  +A+    EE + F+  +   +I  N+FSF  ++     
Sbjct: 321 ACKLFDEVPNWDVVSATATIGCFARYHHHEEAIYFFSRMLALNIKPNQFSFGTVIPSATA 380

Query: 198 LEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTM 257
           L++L   RQ+H   +  G  SNV + S++VD YAK   +++A++ F++T   +V+++TT+
Sbjct: 381 LQDLNSGRQLHACAIKMGLESNVFVGSAVVDFYAKLTSINEAQKAFEDTHEPNVVSYTTL 440

Query: 258 VSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQ 317
           + GY K    + A  LF  MPE+N VSW  +I+GY++ G  ++A+ LF  M+     PN+
Sbjct: 441 IRGYLKKERFDDALALFRXMPERNVVSWNAMISGYSQMGYNEEAVNLFVVMLREGXLPNE 500

Query: 318 HTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDL 377
            TF   + A A+I +L  G+  HG  ++   + +  + +SL+  Y+KCG + +   VF+ 
Sbjct: 501 RTFPCAISAVANIAALGMGRSFHGSAVKFLGKFDVFIGNSLVSFYAKCGSMEESLLVFN- 559

Query: 378 TDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQE 437
           T  K+N + WN +I     HG   +AI  F  M  + ++P+ +TL  +L AC HSGLV +
Sbjct: 560 TLPKKNIVSWNALICGYANHGRGMEAIYFFEKMQDTGLRPNSVTLLGLLLACNHSGLVDK 619

Query: 438 GLTYF-ESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGV 496
           G +YF ++   + G++   EHHAC+++LL+++G   +    L ++P+      W AL G 
Sbjct: 620 GYSYFNKARVEEPGLL-TPEHHACMVDLLSRSGRFKEAEKFLHELPFVPGIGFWKALLGG 678

Query: 497 CRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQ 556
           CRIH N+++G     +++  +P+  +++ +LS+ +SA G+ + V  +R+ + E++ K   
Sbjct: 679 CRIHSNMELGELAARKILALDPEDVSSYVMLSNAHSAAGRWQSVSMIRKEMREKRMKGVP 738

Query: 557 AISWIEIENKVHAFSVSDSLHPMRDVLYSVL 587
             SWIEI +KVH F   D  H   D +Y VL
Sbjct: 739 GSSWIEIRSKVHIFVTGDRNHDQHDEIYQVL 769



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 64/227 (28%), Positives = 108/227 (47%), Gaps = 4/227 (1%)

Query: 88  TFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAE 147
            F+ + ++  Y K  S  +A+K F+     N+ SY  ++ GY        A  LF  M E
Sbjct: 403 VFVGSAVVDFYAKLTSINEAQKAFEDTHEPNVVSYTTLIRGYLKKERFDDALALFRXMPE 462

Query: 148 RDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQV 207
           R+VVSWN MI GY++ G  EE +  + V+ R     NE +F   ++    +  L + R  
Sbjct: 463 RNVVSWNAMISGYSQMGYNEEAVNLFVVMLREGXLPNERTFPCAISAVANIAALGMGRSF 522

Query: 208 HGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDM 267
           HG  +      +V I +S+V  YAKCG + ++  +F+    +++++W  ++ GYA  G  
Sbjct: 523 HGSAVKFLGKFDVFIGNSLVSFYAKCGSMEESLLVFNTLPKKNIVSWNALICGYANHGRG 582

Query: 268 ESASKLFNEMPE----KNPVSWTTLIAGYTRNGLGQKALELFTRMMI 310
             A   F +M +     N V+   L+     +GL  K    F +  +
Sbjct: 583 MEAIYFFEKMQDTGLRPNSVTLLGLLLACNHSGLVDKGYSYFNKARV 629



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 81/314 (25%), Positives = 142/314 (45%), Gaps = 54/314 (17%)

Query: 233 CGELSDARRLFDETDARDVLTWTTM-----VSGYAKLGDMESASKLFNEMPEKNPVSWTT 287
           C +L +++R       R V   TT+     V  Y+   ++  A KLF+E+P  + VS T 
Sbjct: 283 CNQLKESQR----AHGRAVKLGTTILEPDIVCSYSASKELWDACKLFDEVPNWDVVSATA 338

Query: 288 LIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTN 347
            I  + R    ++A+  F+RM+ L I+PNQ +F + + +  ++  L  G+Q+H   I+  
Sbjct: 339 TIGCFARYHHHEEAIYFFSRMLALNIKPNQFSFGTVIPSATALQDLNSGRQLHACAIKMG 398

Query: 348 FRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDN--------------------------- 380
             SN  V S+++D Y+K   +N+ ++ F+ T                             
Sbjct: 399 LESNVFVGSAVVDFYAKLTSINEAQKAFEDTHEPNVVSYTTLIRGYLKKERFDDALALFR 458

Query: 381 ---KENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQE 437
              + N + WN MIS  +Q GY+E+A+ LF  M+R    P++ T    ++A  +   +  
Sbjct: 459 XMPERNVVSWNAMISGYSQMGYNEEAVNLFVVMLREGXLPNERTFPCAISAVANIAALGM 518

Query: 438 GLTYFESMTHDLG----IIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNAL 493
           G ++  S    LG     I N      L+   A+ G  ++ +     +P + +   WNAL
Sbjct: 519 GRSFHGSAVKFLGKFDVFIGNS-----LVSFYAKCGSMEESLLVFNTLP-KKNIVSWNAL 572

Query: 494 HGVCRIHGNIDMGR 507
             +C   G  + GR
Sbjct: 573 --IC---GYANHGR 581


>gi|297739586|emb|CBI29768.3| unnamed protein product [Vitis vinifera]
          Length = 676

 Score =  291 bits (745), Expect = 7e-76,   Method: Compositional matrix adjust.
 Identities = 165/514 (32%), Positives = 263/514 (51%), Gaps = 49/514 (9%)

Query: 129 YANLGMMKHARNLFDNMAERDVVS--------WNTMIIGYAKSGAVEEGLKFYKVLRRFS 180
           Y+ LG +  AR LFD+                 NTM+  YA +G   E +  Y  ++R  
Sbjct: 68  YSKLGDLHSARTLFDHRHHHHHGHTQAPNSFLCNTMLRAYANAGRSYEAIDLYIYMQRMG 127

Query: 181 ISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDAR 240
           +  N F++  +L +C           VHGQV+ TGF S++ + +++VD YAKCGE+ DA 
Sbjct: 128 VGVNNFTYPFVLKVCASELGAVFGEVVHGQVVRTGFGSDLFVEAALVDMYAKCGEIGDAH 187

Query: 241 RLFDETDARDVLTWTTMVSGY-----------------------------------AKLG 265
            +FD    RDV+ WT M++ Y                                    +LG
Sbjct: 188 EVFDRMLIRDVVCWTAMITLYEQAERPLKALMLFRKMQEEGFLGDEITAISVASAVGQLG 247

Query: 266 D----MESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFS 321
           D    +  A  +F+ M E+N +SW ++++GYT+NG    AL LF +M      PN  T  
Sbjct: 248 DGRMAISRARLVFDRMEERNGISWNSMLSGYTQNGRPTDALSLFNQMQASECDPNPVTAL 307

Query: 322 SCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNK 381
             + AC+ + S   G+++H F+I +    +T + ++++DMY KCG L+   ++F+  +  
Sbjct: 308 IMVSACSYLGSKHLGRKLHNFVISSKMDIDTTLRNAIMDMYMKCGDLDTAVEMFNNCELG 367

Query: 382 ENSML-WNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLT 440
           E  +  WN +IS    HG+ ++A+ LF  M    V+P+ IT   IL+AC+H+GL+ EG  
Sbjct: 368 ERDVSSWNVLISGYGVHGHGKEALELFSRMQVEGVEPNDITFTSILSACSHAGLIDEGRK 427

Query: 441 YFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIH 500
            F  MT  L + P  +H+AC++++L +AG  ++    ++K+P      +W AL   CRIH
Sbjct: 428 CFADMT-KLSVRPEMKHYACMVDMLGRAGFLNEAFRLIKKIPSRPSDEVWGALLLACRIH 486

Query: 501 GNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISW 560
           GN ++G    + L    P+ +  + L+S+IY+A  K + VE VRQ +  R  KK  A S 
Sbjct: 487 GNTELGEIAANNLFQLEPEHTGYYVLMSNIYAASNKWKEVEMVRQNMKSRGLKKPAAFSV 546

Query: 561 IEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQM 594
           IE   +VH F  +D   P    +Y  +E LA +M
Sbjct: 547 IEFGTEVHGFHTADQSSPYYREVYRKVESLAIEM 580



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 99/428 (23%), Positives = 182/428 (42%), Gaps = 74/428 (17%)

Query: 16  PNNCLIQSFL-SLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRV 74
           PN+ L  + L +  + G+  EAI     + + G+ +   T  F+L+ CA       G+ V
Sbjct: 95  PNSFLCNTMLRAYANAGRSYEAIDLYIYMQRMGVGVNNFTYPFVLKVCASELGAVFGEVV 154

Query: 75  HLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGY----- 129
           H  +  T   +   F+   L+ MY KCG   DA +VFD++ ++++  +  M++ Y     
Sbjct: 155 HGQVVRTGFGS-DLFVEAALVDMYAKCGEIGDAHEVFDRMLIRDVVCWTAMITLYEQAER 213

Query: 130 ------------------------------ANLG----MMKHARNLFDNMAERDVVSWNT 155
                                           LG     +  AR +FD M ER+ +SWN+
Sbjct: 214 PLKALMLFRKMQEEGFLGDEITAISVASAVGQLGDGRMAISRARLVFDRMEERNGISWNS 273

Query: 156 MIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTG 215
           M+ GY ++G   + L  +  ++      N  +   +++ C  L    L R++H  V+ + 
Sbjct: 274 MLSGYTQNGRPTDALSLFNQMQASECDPNPVTALIMVSACSYLGSKHLGRKLHNFVISSK 333

Query: 216 FLSNVVISSSIVDAYAKCGELSDARRLFD--ETDARDVLTWTTMVSGYAKLGDMESASKL 273
              +  + ++I+D Y KCG+L  A  +F+  E   RDV +W  ++SGY   G  + A +L
Sbjct: 334 MDIDTTLRNAIMDMYMKCGDLDTAVEMFNNCELGERDVSSWNVLISGYGVHGHGKEALEL 393

Query: 274 FNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSL 333
           F                               +RM +  + PN  TF+S L AC+    +
Sbjct: 394 F-------------------------------SRMQVEGVEPNDITFTSILSACSHAGLI 422

Query: 334 KHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISA 393
             G++    + + + R      + ++DM  + G LN+  ++     ++ +  +W  ++ A
Sbjct: 423 DEGRKCFADMTKLSVRPEMKHYACMVDMLGRAGFLNEAFRLIKKIPSRPSDEVWGALLLA 482

Query: 394 LTQHGYDE 401
              HG  E
Sbjct: 483 CRIHGNTE 490


>gi|15242278|ref|NP_197038.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75180838|sp|Q9LXE8.1|PP386_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g15340, mitochondrial; Flags: Precursor
 gi|7671503|emb|CAB89344.1| putative protein [Arabidopsis thaliana]
 gi|332004768|gb|AED92151.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 623

 Score =  291 bits (745), Expect = 7e-76,   Method: Compositional matrix adjust.
 Identities = 164/553 (29%), Positives = 288/553 (52%), Gaps = 47/553 (8%)

Query: 50  LPAETLAFILQQCAESKSLKLGKRVHLHLKLTQ-RKTPTTFLSNHLISMYFKCGSDVDAR 108
           L  + +  +L+ CA    L+ GK +H  L  +  +K P ++LSN L   Y          
Sbjct: 4   LSYQKVRLLLRHCAHRSFLRPGKELHAVLTTSGLKKAPRSYLSNALFQFY---------- 53

Query: 109 KVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDN--MAERDVVSWNTMIIGYAKSGAV 166
                                A+ G M  A+ LFD   ++E+D V W T++  +++ G +
Sbjct: 54  ---------------------ASSGEMVTAQKLFDEIPLSEKDNVDWTTLLSSFSRYGLL 92

Query: 167 EEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSI 226
              +K +  +RR  +  ++ S   +  +C KLE+L   +Q HG  +  G L++V + +++
Sbjct: 93  VNSMKLFVEMRRKRVEIDDVSVVCLFGVCAKLEDLGFAQQGHGVAVKMGVLTSVKVCNAL 152

Query: 227 VDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWT 286
           +D Y KCG +S+ +R+F+E + + V++WT ++    K   +E   ++F+EMPE+N V+WT
Sbjct: 153 MDMYGKCGLVSEVKRIFEELEEKSVVSWTVVLDTVVKWEGLERGREVFHEMPERNAVAWT 212

Query: 287 TLIAGYTRNGLGQKALELFTRMMILRIRP--NQHTFSSCLCACASIVSLKHGKQVHGFLI 344
            ++AGY   G  ++ LEL    M+ R     N  T  S L ACA   +L  G+ VH + +
Sbjct: 213 VMVAGYLGAGFTREVLELLAE-MVFRCGHGLNFVTLCSMLSACAQSGNLVVGRWVHVYAL 271

Query: 345 RTNF-------RSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQH 397
           +            + +V ++L+DMY+KCG ++    VF L   K N + WN + S L  H
Sbjct: 272 KKEMMMGEEASYDDVMVGTALVDMYAKCGNIDSSMNVFRLM-RKRNVVTWNALFSGLAMH 330

Query: 398 GYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEH 457
           G     I +F  M+R  VKPD +T   +L+AC+HSG+V EG   F S+    G+ P  +H
Sbjct: 331 GKGRMVIDMFPQMIR-EVKPDDLTFTAVLSACSHSGIVDEGWRCFHSLRF-YGLEPKVDH 388

Query: 458 HACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQN 517
           +AC+++LL +AG  ++    + +MP   +  +  +L G C +HG +++  ++  +LI  +
Sbjct: 389 YACMVDLLGRAGLIEEAEILMREMPVPPNEVVLGSLLGSCSVHGKVEIAERIKRELIQMS 448

Query: 518 PQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLH 577
           P ++    L+S++Y A G+  + + +R  + +R  +K   +S I + + VH FS  D  H
Sbjct: 449 PGNTEYQILMSNMYVAEGRSDIADGLRGSLRKRGIRKIPGLSSIYVNDSVHRFSSGDRSH 508

Query: 578 PMRDVLYSVLEQL 590
           P    +Y  L ++
Sbjct: 509 PRTKEIYLKLNEV 521


>gi|449507535|ref|XP_004163058.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g30700-like [Cucumis sativus]
          Length = 788

 Score =  291 bits (745), Expect = 7e-76,   Method: Compositional matrix adjust.
 Identities = 169/552 (30%), Positives = 273/552 (49%), Gaps = 69/552 (12%)

Query: 47  GIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKT--PTTFLSNHLISMYFKCGSD 104
           G+   + TLA +L   AE +  +LG  +     L  +K      ++   LIS+Y KCG  
Sbjct: 209 GLSFDSTTLATVLTAVAELQEYRLGMGIQC---LASKKGLHSDVYVLTGLISLYSKCGKS 265

Query: 105 VDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSG 164
              R                                LFD + + D++S+N MI GY  + 
Sbjct: 266 CKGRI-------------------------------LFDQIDQPDLISYNAMISGYTFNH 294

Query: 165 AVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISS 224
             E  +  ++ L       N  +  G++ + +    L+L+R +    L  G +    +S+
Sbjct: 295 ETESAVTLFRELLASGQRVNSSTLVGLIPVYLPFNHLQLSRLIQNLSLKIGIILQPSVST 354

Query: 225 SIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVS 284
           ++   Y +  E+  AR                               +LF+E PEK+  S
Sbjct: 355 ALTTVYCRLNEVQFAR-------------------------------QLFDESPEKSLAS 383

Query: 285 WTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLI 344
           W  +I+GYT+NGL  +A+ LF  MM  ++ PN  T +S L ACA + +L  GK VHG + 
Sbjct: 384 WNAMISGYTQNGLTDRAISLFQEMMP-QLSPNPVTVTSILSACAQLGALSIGKWVHGLIK 442

Query: 345 RTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAI 404
                SN  V ++L+DMY+KCG + + RQ+FDL  +K N + WN MI+    HG+ ++A+
Sbjct: 443 SERLESNVYVSTALVDMYAKCGSIVEARQLFDLMVDK-NVVTWNAMITGYGLHGHGKEAL 501

Query: 405 RLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIEL 464
           +LF++M++S + P  +T   IL AC+HSGLV EG   F SM ++ G  P  EH+AC++++
Sbjct: 502 KLFYEMLQSGIPPTGVTFLSILYACSHSGLVSEGNEIFHSMANNYGFQPMSEHYACMVDI 561

Query: 465 LAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATH 524
           L +AG     +  +E+MP E    +W AL G C IH N +M      +L   +P++   +
Sbjct: 562 LGRAGQLTNALEFIERMPLEPGPAVWGALLGACMIHKNTEMANVASKRLFQLDPENVGYY 621

Query: 525 GLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLY 584
            LLS+IYS          VRQ++ +R+  K    + IEI+++ + F+  D  HP    ++
Sbjct: 622 VLLSNIYSTDRNFPKAASVRQVVKKRKLAKTPGCTLIEIDDQQYVFTSGDRSHPQATAIF 681

Query: 585 SVLEQLAGQMGE 596
            +LE+L G+M E
Sbjct: 682 EMLEKLTGKMRE 693



 Score =  132 bits (333), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 115/445 (25%), Positives = 209/445 (46%), Gaps = 43/445 (9%)

Query: 100 KCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIG 159
           + G  + A  + D +   NLF  + ++  Y      + AR +FD M ERD V WNTMI G
Sbjct: 130 RVGVLLHAHSIVDGV-ASNLFVGSAIVDLYFKFTRAELARKVFDVMPERDTVLWNTMISG 188

Query: 160 YAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSN 219
           ++++   E+ ++ +  +    +S +  + A +LT   +L+E +L   +       G  S+
Sbjct: 189 FSRNSYFEDSIRVFVDMLDVGLSFDSTTLATVLTAVAELQEYRLGMGIQCLASKKGLHSD 248

Query: 220 VVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNE-MP 278
           V + + ++  Y+KCG+    R LFD+ D  D++++  M+SGY    + ESA  LF E + 
Sbjct: 249 VYVLTGLISLYSKCGKSCKGRILFDQIDQPDLISYNAMISGYTFNHETESAVTLFRELLA 308

Query: 279 EKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQ 338
               V+ +TL+      GL    L  F  + + R+  N              +SLK    
Sbjct: 309 SGQRVNSSTLV------GLIPVYLP-FNHLQLSRLIQN--------------LSLK---- 343

Query: 339 VHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSML-WNTMISALTQH 397
             G +++ +      V ++L  +Y +   +   RQ+FD  ++ E S+  WN MIS  TQ+
Sbjct: 344 -IGIILQPS------VSTALTTVYCRLNEVQFARQLFD--ESPEKSLASWNAMISGYTQN 394

Query: 398 GYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEH 457
           G  ++AI LF +M+   + P+ +T+  IL+AC   G +  G  +   +     +  N   
Sbjct: 395 GLTDRAISLFQEMM-PQLSPNPVTVTSILSACAQLGALSIG-KWVHGLIKSERLESNVYV 452

Query: 458 HACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQN 517
              L+++ A+ G   +   QL  +  + +   WNA+     +HG+     K+  +++   
Sbjct: 453 STALVDMYAKCGSIVE-ARQLFDLMVDKNVVTWNAMITGYGLHGHGKEALKLFYEMLQSG 511

Query: 518 -PQSSATHGLLSSIYSALGKGRLVE 541
            P +  T   LS +Y+    G + E
Sbjct: 512 IPPTGVT--FLSILYACSHSGLVSE 534



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 109/454 (24%), Positives = 204/454 (44%), Gaps = 57/454 (12%)

Query: 118 NLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLR 177
           +L S   +   + +LG + H R LF+ +++ D+  +N +I G++ +G  +  +  Y  LR
Sbjct: 45  DLSSITKLTHKFFDLGAVAHVRQLFNKVSKPDLFLFNVLIRGFSDNGLPKSSIFLYTHLR 104

Query: 178 RFS-ISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGEL 236
           + + +  + F++A  ++   +LE+ ++   +H   +V G  SN+ + S+IVD Y      
Sbjct: 105 KXTNLRPDNFTYAFAISAASRLEDERVGVLLHAHSIVDGVASNLFVGSAIVDLY------ 158

Query: 237 SDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNG 296
                 F  T A                   E A K+F+ MPE++ V W T+I+G++RN 
Sbjct: 159 ------FKFTRA-------------------ELARKVFDVMPERDTVLWNTMISGFSRNS 193

Query: 297 LGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMS 356
             + ++ +F  M+ + +  +  T ++ L A A +   + G  +     +    S+  V++
Sbjct: 194 YFEDSIRVFVDMLDVGLSFDSTTLATVLTAVAELQEYRLGMGIQCLASKKGLHSDVYVLT 253

Query: 357 SLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVK 416
            LI +YSKCG    GR +FD  D + + + +N MIS  T +   E A+ LF +++ S  +
Sbjct: 254 GLISLYSKCGKSCKGRILFDQID-QPDLISYNAMISGYTFNHETESAVTLFRELLASGQR 312

Query: 417 PDKITLAVILNACTHSGLVQEGLTY--------FESMTHDLGIIPNQEHHACLIELLAQA 468
                    +N+ T  GL+   L +         ++++  +GII        L  +  + 
Sbjct: 313 ---------VNSSTLVGLIPVYLPFNHLQLSRLIQNLSLKIGIILQPSVSTALTTVYCRL 363

Query: 469 GCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLS 528
               Q   QL     E     WNA+      +G  D    +  +++   PQ S     ++
Sbjct: 364 N-EVQFARQLFDESPEKSLASWNAMISGYTQNGLTDRAISLFQEMM---PQLSPNPVTVT 419

Query: 529 SIYSA---LGKGRLVEKVRQLINERQFKKEQAIS 559
           SI SA   LG   + + V  LI   + +    +S
Sbjct: 420 SILSACAQLGALSIGKWVHGLIKSERLESNVYVS 453



 Score =  108 bits (270), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 97/398 (24%), Positives = 166/398 (41%), Gaps = 77/398 (19%)

Query: 36  AISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRV-HLHLKLTQRKTPTTFLSNHL 94
           A++    L   G R+ + TL  ++        L+L + + +L LK+     P+  +S  L
Sbjct: 299 AVTLFRELLASGQRVNSSTLVGLIPVYLPFNHLQLSRLIQNLSLKIGIILQPS--VSTAL 356

Query: 95  ISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWN 154
            ++Y +      AR++FD+ P K+L S+N M+SGY   G+   A +LF  M  +      
Sbjct: 357 TTVYCRLNEVQFARQLFDESPEKSLASWNAMISGYTQNGLTDRAISLFQEMMPQ------ 410

Query: 155 TMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVT 214
                                     +S N  +   IL+ C +L  L + + VHG +   
Sbjct: 411 --------------------------LSPNPVTVTSILSACAQLGALSIGKWVHGLIKSE 444

Query: 215 GFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLF 274
              SNV +S+++VD YAKCG + +AR+LFD    ++V+TW  M++GY   G  + A KLF
Sbjct: 445 RLESNVYVSTALVDMYAKCGSIVEARQLFDLMVDKNVVTWNAMITGYGLHGHGKEALKLF 504

Query: 275 NEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLK 334
            EM +                                 I P   TF S L AC+    + 
Sbjct: 505 YEMLQSG-------------------------------IPPTGVTFLSILYACSHSGLVS 533

Query: 335 HGKQV-HGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISA 393
            G ++ H       F+  +   + ++D+  + G L +  +  +    +    +W  ++ A
Sbjct: 534 EGNEIFHSMANNYGFQPMSEHYACMVDILGRAGQLTNALEFIERMPLEPGPAVWGALLGA 593

Query: 394 LTQHGYDEQA----IRLFHDMVRSSVKPDKITLAVILN 427
              H   E A     RLF       + P+ +   V+L+
Sbjct: 594 CMIHKNTEMANVASKRLFQ------LDPENVGYYVLLS 625


>gi|449470293|ref|XP_004152852.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g30700-like [Cucumis sativus]
          Length = 788

 Score =  291 bits (745), Expect = 7e-76,   Method: Compositional matrix adjust.
 Identities = 169/552 (30%), Positives = 273/552 (49%), Gaps = 69/552 (12%)

Query: 47  GIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKT--PTTFLSNHLISMYFKCGSD 104
           G+   + TLA +L   AE +  +LG  +     L  +K      ++   LIS+Y KCG  
Sbjct: 209 GLSFDSTTLATVLTAVAELQEYRLGMGIQC---LASKKGLHSDVYVLTGLISLYSKCGKS 265

Query: 105 VDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSG 164
              R                                LFD + + D++S+N MI GY  + 
Sbjct: 266 CKGRI-------------------------------LFDQIDQPDLISYNAMISGYTFNH 294

Query: 165 AVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISS 224
             E  +  ++ L       N  +  G++ + +    L+L+R +    L  G +    +S+
Sbjct: 295 ETESAVTLFRELLASGQRVNSSTLVGLIPVYLPFNHLQLSRLIQNLSLKIGIILQPSVST 354

Query: 225 SIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVS 284
           ++   Y +  E+  AR                               +LF+E PEK+  S
Sbjct: 355 ALTTVYCRLNEVQFAR-------------------------------QLFDESPEKSLAS 383

Query: 285 WTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLI 344
           W  +I+GYT+NGL  +A+ LF  MM  ++ PN  T +S L ACA + +L  GK VHG + 
Sbjct: 384 WNAMISGYTQNGLTDRAISLFQEMMP-QLSPNPVTVTSILSACAQLGALSIGKWVHGLIK 442

Query: 345 RTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAI 404
                SN  V ++L+DMY+KCG + + RQ+FDL  +K N + WN MI+    HG+ ++A+
Sbjct: 443 SERLESNVYVSTALVDMYAKCGSIVEARQLFDLMVDK-NVVTWNAMITGYGLHGHGKEAL 501

Query: 405 RLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIEL 464
           +LF++M++S + P  +T   IL AC+HSGLV EG   F SM ++ G  P  EH+AC++++
Sbjct: 502 KLFYEMLQSGIPPTGVTFLSILYACSHSGLVSEGNEIFHSMANNYGFQPMSEHYACMVDI 561

Query: 465 LAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATH 524
           L +AG     +  +E+MP E    +W AL G C IH N +M      +L   +P++   +
Sbjct: 562 LGRAGQLTNALEFIERMPLEPGPAVWGALLGACMIHKNTEMANVASKRLFQLDPENVGYY 621

Query: 525 GLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLY 584
            LLS+IYS          VRQ++ +R+  K    + IEI+++ + F+  D  HP    ++
Sbjct: 622 VLLSNIYSTDRNFPKAASVRQVVKKRKLAKTPGCTLIEIDDQQYVFTSGDRSHPQATAIF 681

Query: 585 SVLEQLAGQMGE 596
            +LE+L G+M E
Sbjct: 682 EMLEKLTGKMRE 693



 Score =  132 bits (333), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 115/445 (25%), Positives = 209/445 (46%), Gaps = 43/445 (9%)

Query: 100 KCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIG 159
           + G  + A  + D +   NLF  + ++  Y      + AR +FD M ERD V WNTMI G
Sbjct: 130 RVGVLLHAHSIVDGV-ASNLFVGSAIVDLYFKFTRAELARKVFDVMPERDTVLWNTMISG 188

Query: 160 YAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSN 219
           ++++   E+ ++ +  +    +S +  + A +LT   +L+E +L   +       G  S+
Sbjct: 189 FSRNSYFEDSIRVFVDMLDVGLSFDSTTLATVLTAVAELQEYRLGMGIQCLASKKGLHSD 248

Query: 220 VVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNE-MP 278
           V + + ++  Y+KCG+    R LFD+ D  D++++  M+SGY    + ESA  LF E + 
Sbjct: 249 VYVLTGLISLYSKCGKSCKGRILFDQIDQPDLISYNAMISGYTFNHETESAVTLFRELLA 308

Query: 279 EKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQ 338
               V+ +TL+      GL    L  F  + + R+  N              +SLK    
Sbjct: 309 SGQRVNSSTLV------GLIPVYLP-FNHLQLSRLIQN--------------LSLK---- 343

Query: 339 VHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSML-WNTMISALTQH 397
             G +++ +      V ++L  +Y +   +   RQ+FD  ++ E S+  WN MIS  TQ+
Sbjct: 344 -IGIILQPS------VSTALTTVYCRLNEVQFARQLFD--ESPEKSLASWNAMISGYTQN 394

Query: 398 GYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEH 457
           G  ++AI LF +M+   + P+ +T+  IL+AC   G +  G  +   +     +  N   
Sbjct: 395 GLTDRAISLFQEMM-PQLSPNPVTVTSILSACAQLGALSIG-KWVHGLIKSERLESNVYV 452

Query: 458 HACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQN 517
              L+++ A+ G   +   QL  +  + +   WNA+     +HG+     K+  +++   
Sbjct: 453 STALVDMYAKCGSIVE-ARQLFDLMVDKNVVTWNAMITGYGLHGHGKEALKLFYEMLQSG 511

Query: 518 -PQSSATHGLLSSIYSALGKGRLVE 541
            P +  T   LS +Y+    G + E
Sbjct: 512 IPPTGVT--FLSILYACSHSGLVSE 534



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 109/454 (24%), Positives = 204/454 (44%), Gaps = 57/454 (12%)

Query: 118 NLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLR 177
           +L S   +   + +LG + H R LF+ +++ D+  +N +I G++ +G  +  +  Y  LR
Sbjct: 45  DLSSITKLTHKFFDLGAVAHVRQLFNKVSKPDLFLFNVLIRGFSDNGLPKSSIFLYTHLR 104

Query: 178 R-FSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGEL 236
           +  ++  + F++A  ++   +LE+ ++   +H   +V G  SN+ + S+IVD Y      
Sbjct: 105 KKTNLRPDNFTYAFAISAASRLEDERVGVLLHAHSIVDGVASNLFVGSAIVDLY------ 158

Query: 237 SDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNG 296
                 F  T A                   E A K+F+ MPE++ V W T+I+G++RN 
Sbjct: 159 ------FKFTRA-------------------ELARKVFDVMPERDTVLWNTMISGFSRNS 193

Query: 297 LGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMS 356
             + ++ +F  M+ + +  +  T ++ L A A +   + G  +     +    S+  V++
Sbjct: 194 YFEDSIRVFVDMLDVGLSFDSTTLATVLTAVAELQEYRLGMGIQCLASKKGLHSDVYVLT 253

Query: 357 SLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVK 416
            LI +YSKCG    GR +FD  D + + + +N MIS  T +   E A+ LF +++ S  +
Sbjct: 254 GLISLYSKCGKSCKGRILFDQID-QPDLISYNAMISGYTFNHETESAVTLFRELLASGQR 312

Query: 417 PDKITLAVILNACTHSGLVQEGLTY--------FESMTHDLGIIPNQEHHACLIELLAQA 468
                    +N+ T  GL+   L +         ++++  +GII        L  +  + 
Sbjct: 313 ---------VNSSTLVGLIPVYLPFNHLQLSRLIQNLSLKIGIILQPSVSTALTTVYCRL 363

Query: 469 GCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLS 528
               Q   QL     E     WNA+      +G  D    +  +++   PQ S     ++
Sbjct: 364 N-EVQFARQLFDESPEKSLASWNAMISGYTQNGLTDRAISLFQEMM---PQLSPNPVTVT 419

Query: 529 SIYSA---LGKGRLVEKVRQLINERQFKKEQAIS 559
           SI SA   LG   + + V  LI   + +    +S
Sbjct: 420 SILSACAQLGALSIGKWVHGLIKSERLESNVYVS 453



 Score =  108 bits (269), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 97/398 (24%), Positives = 166/398 (41%), Gaps = 77/398 (19%)

Query: 36  AISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRV-HLHLKLTQRKTPTTFLSNHL 94
           A++    L   G R+ + TL  ++        L+L + + +L LK+     P+  +S  L
Sbjct: 299 AVTLFRELLASGQRVNSSTLVGLIPVYLPFNHLQLSRLIQNLSLKIGIILQPS--VSTAL 356

Query: 95  ISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWN 154
            ++Y +      AR++FD+ P K+L S+N M+SGY   G+   A +LF  M  +      
Sbjct: 357 TTVYCRLNEVQFARQLFDESPEKSLASWNAMISGYTQNGLTDRAISLFQEMMPQ------ 410

Query: 155 TMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVT 214
                                     +S N  +   IL+ C +L  L + + VHG +   
Sbjct: 411 --------------------------LSPNPVTVTSILSACAQLGALSIGKWVHGLIKSE 444

Query: 215 GFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLF 274
              SNV +S+++VD YAKCG + +AR+LFD    ++V+TW  M++GY   G  + A KLF
Sbjct: 445 RLESNVYVSTALVDMYAKCGSIVEARQLFDLMVDKNVVTWNAMITGYGLHGHGKEALKLF 504

Query: 275 NEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLK 334
            EM +                                 I P   TF S L AC+    + 
Sbjct: 505 YEMLQSG-------------------------------IPPTGVTFLSILYACSHSGLVS 533

Query: 335 HGKQV-HGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISA 393
            G ++ H       F+  +   + ++D+  + G L +  +  +    +    +W  ++ A
Sbjct: 534 EGNEIFHSMANNYGFQPMSEHYACMVDILGRAGQLTNALEFIERMPLEPGPAVWGALLGA 593

Query: 394 LTQHGYDEQA----IRLFHDMVRSSVKPDKITLAVILN 427
              H   E A     RLF       + P+ +   V+L+
Sbjct: 594 CMIHKNTEMANVASKRLFQ------LDPENVGYYVLLS 625


>gi|222616851|gb|EEE52983.1| hypothetical protein OsJ_35654 [Oryza sativa Japonica Group]
          Length = 632

 Score =  291 bits (745), Expect = 7e-76,   Method: Compositional matrix adjust.
 Identities = 154/430 (35%), Positives = 248/430 (57%), Gaps = 3/430 (0%)

Query: 123 NNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLK-FYKVLRRFSI 181
           N ++  YAN   +  A  +FD M ERDVVSW T++ GYA++G  +E  + F +++    +
Sbjct: 182 NALVHFYANHKSLDDAGKVFDEMPERDVVSWTTLVDGYARAGLADEAWRLFCRMVVVGGM 241

Query: 182 SCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARR 241
             N  +    ++   ++  L     +H  V   G   +V + +++VD + KCG +  AR 
Sbjct: 242 RPNAVTLVAAVSAIGQMGLLAFGIMLHKYVTEGGVARSVNLDNALVDMFGKCGCVRYARE 301

Query: 242 LFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKA 301
           +FD  + +DV +WT+MV+ YAK GD+ESA +LF +MP +N VSW+ +IA Y++    ++A
Sbjct: 302 VFDGMEVKDVYSWTSMVNAYAKCGDLESAEQLFKDMPRRNVVSWSCMIAAYSQLNQPEEA 361

Query: 302 LELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVM-SSLID 360
           + LF  M+   + P   T  S L ACA +  L  G+ ++   I +N    T+ + ++LID
Sbjct: 362 VWLFREMIAAGVDPIDATLVSVLSACAQLGCLDLGRWIYENYIVSNKIGLTVNLGNALID 421

Query: 361 MYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKI 420
           M++KCG + +  ++FD    + N + WNTMI A   HG  E+AIRLF  +   ++ PD+I
Sbjct: 422 MFAKCGDVGEASKLFDEMAER-NVVSWNTMIMAHAVHGQSEEAIRLFEQLKGENIVPDQI 480

Query: 421 TLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEK 480
           T   +L +C+HSGLV EG  YF+ M     I P  EH+AC+I+LL + G  ++       
Sbjct: 481 TFLGLLASCSHSGLVSEGRRYFKEMEMFYRIEPRVEHYACMIDLLGKVGLLEEAFEVARG 540

Query: 481 MPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLV 540
           MP E D   W AL   CR+HGN+++G  V D+L++ +P  S  + L+S IY++  K   V
Sbjct: 541 MPMEADEAGWGALLNACRMHGNVEIGACVADKLVELDPSDSGIYVLMSQIYASKNKWDQV 600

Query: 541 EKVRQLINER 550
           + +R  + +R
Sbjct: 601 KMLRMTMRDR 610



 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 96/359 (26%), Positives = 171/359 (47%), Gaps = 44/359 (12%)

Query: 47  GIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTF-LSNHLISMYFKCGSDV 105
           G+R  A TL   +    +   L  G  + LH  +T+     +  L N L+ M+ KCG   
Sbjct: 240 GMRPNAVTLVAAVSAIGQMGLLAFG--IMLHKYVTEGGVARSVNLDNALVDMFGKCGCVR 297

Query: 106 DARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGA 165
            AR+VFD + VK+++S+ +M++ YA  G ++ A  LF +M  R+VVSW+ MI  Y++   
Sbjct: 298 YAREVFDGMEVKDVYSWTSMVNAYAKCGDLESAEQLFKDMPRRNVVSWSCMIAAYSQLNQ 357

Query: 166 VEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLS-NVVISS 224
            EE +  ++ +    +   + +   +L+ C +L  L L R ++   +V+  +   V + +
Sbjct: 358 PEEAVWLFREMIAAGVDPIDATLVSVLSACAQLGCLDLGRWIYENYIVSNKIGLTVNLGN 417

Query: 225 SIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPV- 283
           +++D +AKCG++ +A +LFDE   R+V++W TM+  +A  G  E A +LF ++  +N V 
Sbjct: 418 ALIDMFAKCGDVGEASKLFDEMAERNVVSWNTMIMAHAVHGQSEEAIRLFEQLKGENIVP 477

Query: 284 ---SWTTLIAGYTRNGLGQKALELFTRM-MILRIRPNQHTFSSCLCACASIVSLKHGKQV 339
              ++  L+A  + +GL  +    F  M M  RI P    +     AC            
Sbjct: 478 DQITFLGLLASCSHSGLVSEGRRYFKEMEMFYRIEPRVEHY-----AC------------ 520

Query: 340 HGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHG 398
                             +ID+  K G L +  +V      + +   W  +++A   HG
Sbjct: 521 ------------------MIDLLGKVGLLEEAFEVARGMPMEADEAGWGALLNACRMHG 561



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 103/370 (27%), Positives = 177/370 (47%), Gaps = 45/370 (12%)

Query: 251 VLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMI 310
           VL    +V  YA    ++ A K+F+EMPE++ VSWTTL+ GY R GL  +A  LF RM++
Sbjct: 178 VLVGNALVHFYANHKSLDDAGKVFDEMPERDVVSWTTLVDGYARAGLADEAWRLFCRMVV 237

Query: 311 L-RIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLN 369
           +  +RPN  T  + + A   +  L  G  +H ++       +  + ++L+DM+ KCGC+ 
Sbjct: 238 VGGMRPNAVTLVAAVSAIGQMGLLAFGIMLHKYVTEGGVARSVNLDNALVDMFGKCGCVR 297

Query: 370 DGRQVFDLTDNKE------------------------------NSMLWNTMISALTQHGY 399
             R+VFD  + K+                              N + W+ MI+A +Q   
Sbjct: 298 YAREVFDGMEVKDVYSWTSMVNAYAKCGDLESAEQLFKDMPRRNVVSWSCMIAAYSQLNQ 357

Query: 400 DEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFES--MTHDLGIIPNQEH 457
            E+A+ LF +M+ + V P   TL  +L+AC   G +  G   +E+  +++ +G+  N  +
Sbjct: 358 PEEAVWLFREMIAAGVDPIDATLVSVLSACAQLGCLDLGRWIYENYIVSNKIGLTVNLGN 417

Query: 458 HACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQN 517
              LI++ A+ G   +     ++M  E +   WN +     +HG  +   ++ +QL  +N
Sbjct: 418 --ALIDMFAKCGDVGEASKLFDEMA-ERNVVSWNTMIMAHAVHGQSEEAIRLFEQLKGEN 474

Query: 518 --PQSSATHGLLSSI-YSAL-GKGRLVEKVRQLINERQFKKEQAISWIEIENKV----HA 569
             P      GLL+S  +S L  +GR   K  ++    + + E     I++  KV     A
Sbjct: 475 IVPDQITFLGLLASCSHSGLVSEGRRYFKEMEMFYRIEPRVEHYACMIDLLGKVGLLEEA 534

Query: 570 FSVSDSLHPM 579
           F V+  + PM
Sbjct: 535 FEVARGM-PM 543



 Score = 72.8 bits (177), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 48/177 (27%), Positives = 90/177 (50%), Gaps = 8/177 (4%)

Query: 8   RGINRKNLPN-NCLIQSFLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESK 66
           + + R+N+ + +C+I ++  L    Q  EA+     +   G+     TL  +L  CA+  
Sbjct: 335 KDMPRRNVVSWSCMIAAYSQL---NQPEEAVWLFREMIAAGVDPIDATLVSVLSACAQLG 391

Query: 67  SLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNML 126
            L LG+ ++ +  ++ +   T  L N LI M+ KCG   +A K+FD++  +N+ S+N M+
Sbjct: 392 CLDLGRWIYENYIVSNKIGLTVNLGNALIDMFAKCGDVGEASKLFDEMAERNVVSWNTMI 451

Query: 127 SGYANLGMMKHARNLFDNMAERDVVSWNTMIIGY----AKSGAVEEGLKFYKVLRRF 179
             +A  G  + A  LF+ +   ++V      +G     + SG V EG +++K +  F
Sbjct: 452 MAHAVHGQSEEAIRLFEQLKGENIVPDQITFLGLLASCSHSGLVSEGRRYFKEMEMF 508



 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 55/248 (22%), Positives = 113/248 (45%), Gaps = 11/248 (4%)

Query: 278 PEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKH-- 335
           P  N     T++ G+ R  L  +AL LF R++  R+  +  TF   + A A+    +H  
Sbjct: 97  PGPNAYMLGTMMRGFLRARLPARALGLFRRVVRDRLPADARTFVFAVKAAAAAAESEHGG 156

Query: 336 ----GKQVHGFLIRTNFRSNTI-VMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTM 390
               G+ +H   ++  F   ++ V ++L+  Y+    L+D  +VFD    + + + W T+
Sbjct: 157 TPSGGEAIHCAALKCGFVGESVLVGNALVHFYANHKSLDDAGKVFDEMPER-DVVSWTTL 215

Query: 391 ISALTQHGYDEQAIRLFHDM-VRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDL 449
           +    + G  ++A RLF  M V   ++P+ +TL   ++A    GL+  G+   + +T   
Sbjct: 216 VDGYARAGLADEAWRLFCRMVVVGGMRPNAVTLVAAVSAIGQMGLLAFGIMLHKYVTEG- 274

Query: 450 GIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKV 509
           G+  +      L+++  + GC        + M  + D Y W ++       G+++   ++
Sbjct: 275 GVARSVNLDNALVDMFGKCGCVRYAREVFDGMEVK-DVYSWTSMVNAYAKCGDLESAEQL 333

Query: 510 VDQLIDQN 517
              +  +N
Sbjct: 334 FKDMPRRN 341


>gi|224120376|ref|XP_002318314.1| predicted protein [Populus trichocarpa]
 gi|222858987|gb|EEE96534.1| predicted protein [Populus trichocarpa]
          Length = 539

 Score =  291 bits (745), Expect = 7e-76,   Method: Compositional matrix adjust.
 Identities = 146/426 (34%), Positives = 245/426 (57%), Gaps = 23/426 (5%)

Query: 187 SFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDET 246
           S   +L  C  +      + VHG  + +G   ++ + +++VD YAKCG + +A ++FD  
Sbjct: 15  SLVNVLPACASMGAWLHGKAVHGIAVRSGSFEDLFVGNALVDMYAKCGMVDEASKVFDRI 74

Query: 247 DARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKN----PVSWTTLIAGYTRNGLG---- 298
             +DV++W  MV+GY+++G  E A  LF +M E+N     VSW+ +IA + + GLG    
Sbjct: 75  KEKDVVSWNAMVNGYSQIGRFEDALGLFEKMREENIELNVVSWSAVIAAFAQRGLGCETL 134

Query: 299 -----------QKALELFTRMMILR--IRPNQHTFSSCLCACASIVSLKHGKQVHGFLIR 345
                        ALELF+ M      ++PN  T S  L ACA + +L+ G+Q+H +++R
Sbjct: 135 DVFREMQHGEANDALELFSWMFKQDGLVKPNCFTISCALIACARLAALRLGRQIHAYILR 194

Query: 346 TNFRSNTI-VMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAI 404
            +F S  + V + LIDMY+K G ++  R VFD    K N + W ++++    HG  ++A+
Sbjct: 195 NHFDSAFLYVANCLIDMYAKSGDIDVARFVFDNLKQK-NFVSWTSLMTGYGMHGRGKEAL 253

Query: 405 RLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIEL 464
            +F +M R  ++PD +TL V+L AC+HSG++ +G+ +F SM+ + G+IP QEH+AC+++L
Sbjct: 254 EVFDEMRRVGLQPDGVTLLVVLYACSHSGMIDQGIEFFNSMSKEFGVIPGQEHYACMVDL 313

Query: 465 LAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATH 524
           L +AG  ++ M  +E M  E  S +W AL   CRIH N+++G     QL++ N ++  ++
Sbjct: 314 LGRAGRLNEAMELIEGMQMEPSSIVWVALLSGCRIHANVELGEHAAKQLLELNSENDGSY 373

Query: 525 GLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLY 584
            LLS+IY+   + + V +VR L+     +K    SW++ +     F V+D  HP    +Y
Sbjct: 374 TLLSNIYANARRWKDVARVRSLMKNSGIRKRPGCSWVQGKKGTTTFYVADKTHPQSKQIY 433

Query: 585 SVLEQL 590
            +L  L
Sbjct: 434 EILRSL 439



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 98/378 (25%), Positives = 174/378 (46%), Gaps = 63/378 (16%)

Query: 48  IRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDA 107
           +R    +L  +L  CA   +   GK VH  + +        F+ N L+ MY KCG   +A
Sbjct: 9   MRPDVVSLVNVLPACASMGAWLHGKAVH-GIAVRSGSFEDLFVGNALVDMYAKCGMVDEA 67

Query: 108 RKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAER----DVVSWNTMIIGYAKS 163
            KVFD+I  K++ S+N M++GY+ +G  + A  LF+ M E     +VVSW+ +I  +A+ 
Sbjct: 68  SKVFDRIKEKDVVSWNAMVNGYSQIGRFEDALGLFEKMREENIELNVVSWSAVIAAFAQR 127

Query: 164 GAVEEGLKFYK---------VLRRFS--------ISCNEFSFAGILTICVKLEELKLTRQ 206
           G   E L  ++          L  FS        +  N F+ +  L  C +L  L+L RQ
Sbjct: 128 GLGCETLDVFREMQHGEANDALELFSWMFKQDGLVKPNCFTISCALIACARLAALRLGRQ 187

Query: 207 VHGQVLVTGFLSNVV-ISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLG 265
           +H  +L   F S  + +++ ++D YAK G++  AR +FD    ++ ++WT++++GY   G
Sbjct: 188 IHAYILRNHFDSAFLYVANCLIDMYAKSGDIDVARFVFDNLKQKNFVSWTSLMTGYGMHG 247

Query: 266 DMESASKLFNEMPEKN--PVSWTTLIAGY--TRNGLGQKALELFTRMMI-LRIRPNQHTF 320
             + A ++F+EM      P   T L+  Y  + +G+  + +E F  M     + P Q  +
Sbjct: 248 RGKEALEVFDEMRRVGLQPDGVTLLVVLYACSHSGMIDQGIEFFNSMSKEFGVIPGQEHY 307

Query: 321 SSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDN 380
                AC                              ++D+  + G LN+  ++ +    
Sbjct: 308 -----AC------------------------------MVDLLGRAGRLNEAMELIEGMQM 332

Query: 381 KENSMLWNTMISALTQHG 398
           + +S++W  ++S    H 
Sbjct: 333 EPSSIVWVALLSGCRIHA 350



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 69/253 (27%), Positives = 117/253 (46%), Gaps = 34/253 (13%)

Query: 311 LRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLND 370
           + +RP+  +  + L ACAS+ +  HGK VHG  +R+    +  V ++L+DMY+KCG +++
Sbjct: 7   IDMRPDVVSLVNVLPACASMGAWLHGKAVHGIAVRSGSFEDLFVGNALVDMYAKCGMVDE 66

Query: 371 GRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACT 430
             +VFD    K+  + WN M++  +Q G  E A+ LF  M   +++ + ++ + ++ A  
Sbjct: 67  ASKVFDRIKEKD-VVSWNAMVNGYSQIGRFEDALGLFEKMREENIELNVVSWSAVIAAFA 125

Query: 431 HSGLVQEGLTYFESMTH----------------DLGIIPNQEHHACLIELLAQAGCSDQL 474
             GL  E L  F  M H                D  + PN     C     A   C+   
Sbjct: 126 QRGLGCETLDVFREMQHGEANDALELFSWMFKQDGLVKPN-----CFTISCALIACARLA 180

Query: 475 MNQLEKMPYEH------DS---YLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHG 525
             +L +  + +      DS   Y+ N L  +    G+ID+ R V D L  +N  S  +  
Sbjct: 181 ALRLGRQIHAYILRNHFDSAFLYVANCLIDMYAKSGDIDVARFVFDNLKQKNFVSWTS-- 238

Query: 526 LLSSIYSALGKGR 538
            L + Y   G+G+
Sbjct: 239 -LMTGYGMHGRGK 250



 Score = 72.4 bits (176), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 70/278 (25%), Positives = 126/278 (45%), Gaps = 49/278 (17%)

Query: 25  LSLISKGQLSEAISSLDLLA----QRGIRLP-AETLAFILQQCAESKSLKLGKRVHLHLK 79
           L +  + Q  EA  +L+L +    Q G+  P   T++  L  CA   +L+LG+++H ++ 
Sbjct: 134 LDVFREMQHGEANDALELFSWMFKQDGLVKPNCFTISCALIACARLAALRLGRQIHAYIL 193

Query: 80  LTQRKTPTTFLSNHLISMYFKCGSDVD-ARKVFDKIPVKNLFSYNNMLSGYANLGMMKHA 138
                +   +++N LI MY K G D+D AR VFD +  KN  S+ ++++GY   G  K A
Sbjct: 194 RNHFDSAFLYVANCLIDMYAKSG-DIDVARFVFDNLKQKNFVSWTSLMTGYGMHGRGKEA 252

Query: 139 RNLFDNMA----ERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTI 194
             +FD M     + D V+   ++   + SG +++G++F+  + +      EF        
Sbjct: 253 LEVFDEMRRVGLQPDGVTLLVVLYACSHSGMIDQGIEFFNSMSK------EFGV------ 300

Query: 195 CVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDAR-DVLT 253
                   +  Q H               + +VD   + G L++A  L +        + 
Sbjct: 301 --------IPGQEH--------------YACMVDLLGRAGRLNEAMELIEGMQMEPSSIV 338

Query: 254 WTTMVSG---YAKLGDMESASKLFNEMPEKNPVSWTTL 288
           W  ++SG   +A +   E A+K   E+  +N  S+T L
Sbjct: 339 WVALLSGCRIHANVELGEHAAKQLLELNSENDGSYTLL 376


>gi|56201767|dbj|BAD73217.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|56201874|dbj|BAD73324.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|125569384|gb|EAZ10899.1| hypothetical protein OsJ_00742 [Oryza sativa Japonica Group]
          Length = 569

 Score =  291 bits (745), Expect = 8e-76,   Method: Compositional matrix adjust.
 Identities = 173/564 (30%), Positives = 300/564 (53%), Gaps = 29/564 (5%)

Query: 54  TLAFILQQCAESKSLKLGKRVH---LHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKV 110
           TL   L+  A   S ++   VH   LHL L  +      ++  +++ Y + G   DAR+V
Sbjct: 13  TLPLALRAAA---SPRVASAVHAHALHLGLHAQHD----VAGQILAAYSRLGRAADARRV 65

Query: 111 FDKIPV-KNLFSYNNMLSGYANLGMMKHARNLFDNMA----ERDVVSWNTMIIGYAKSGA 165
           FD +P  +  F +N ++S Y++      AR+ F  MA      D V+W  ++  +A+SG 
Sbjct: 66  FDAMPPGRTTFHWNALISAYSSGCDPDAARDAFARMAAAGARPDAVTWTALLSAHARSGK 125

Query: 166 VEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTR--QVHGQVLVTGFLSN-VVI 222
             + L+ +  ++R     N  S A  L+ C    +L L +   +HG  +V G +   + +
Sbjct: 126 HADVLQLFGEMQRSGCEGNAESMAVALSACPYAGDLALAKGKAIHGCGVVKGLMHGYLFV 185

Query: 223 SSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPE--- 279
           ++S++  Y K GE+ DA++ F +  A++ +TW T+++ YA     + A  +  +M +   
Sbjct: 186 TNSLICMYGKLGEMDDAKKAFRDATAKNTVTWNTLITSYAAARLCDKALDVLAQMEQIGG 245

Query: 280 ---KNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHG 336
               N VSW+ +I G+  +G   +ALELF RM    + PN  T ++ L AC  +++L+ G
Sbjct: 246 TVAPNVVSWSAVIGGFASSGDTDRALELFRRMQQQWLSPNVVTMATVLSACVDLLALRLG 305

Query: 337 KQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQ 396
           +++HG  ++     +++V + LI+MY+KCG ++  R+VFD    ++  + WN+M++    
Sbjct: 306 RELHGHAMKAELDRHSLVENGLINMYAKCGKVSGARKVFDGMKTRD-LISWNSMLAGYGM 364

Query: 397 HGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQE 456
           HG  ++A+ LF DM  ++V+PD +T   +L+AC H+G V EG   F+ M     I P+ E
Sbjct: 365 HGLCDEALALFTDMAGATVEPDGVTFVAVLSACGHAGRVTEGRRLFDRMVRAHKISPSME 424

Query: 457 HHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQ 516
           H+ C++ LL +AG        +E MP   D  +W AL   CRIHG+  M    +  ++  
Sbjct: 425 HYTCMVYLLGRAGLLRDASELVETMPVRPDLCVWGALLNSCRIHGDAAMAEATIANVLQS 484

Query: 517 NPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAF---SVS 573
             QS+  H L++++Y+  G     +KVR +  E   +K    SWIE++NKV AF   S  
Sbjct: 485 EDQSTGNHMLITNLYAMCGMWDESKKVRVMTKEAGLRKNPGQSWIEVDNKVVAFAAGSAP 544

Query: 574 DSLHPMRDVLYSVLEQLAGQMGED 597
            +L    DV + +L+ L  +M ++
Sbjct: 545 PNLTGAEDV-FGMLDDLYAEMEDE 567



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 66/250 (26%), Positives = 115/250 (46%), Gaps = 37/250 (14%)

Query: 29  SKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTT 88
           S G    A+     + Q+ +     T+A +L  C +  +L+LG+ +H H  +       +
Sbjct: 263 SSGDTDRALELFRRMQQQWLSPNVVTMATVLSACVDLLALRLGRELHGH-AMKAELDRHS 321

Query: 89  FLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMA-- 146
            + N LI+MY KCG    ARKVFD +  ++L S+N+ML+GY   G+   A  LF +MA  
Sbjct: 322 LVENGLINMYAKCGKVSGARKVFDGMKTRDLISWNSMLAGYGMHGLCDEALALFTDMAGA 381

Query: 147 --ERDVVSWNTMIIGYAKSGAVEEGLKFY-KVLRRFSISCNEFSF---------AGILTI 194
             E D V++  ++     +G V EG + + +++R   IS +   +         AG+L  
Sbjct: 382 TVEPDGVTFVAVLSACGHAGRVTEGRRLFDRMVRAHKISPSMEHYTCMVYLLGRAGLLRD 441

Query: 195 CVKLEELKLTR-------------QVHGQ-VLVTGFLSNVVISSS--------IVDAYAK 232
             +L E    R             ++HG   +    ++NV+ S          I + YA 
Sbjct: 442 ASELVETMPVRPDLCVWGALLNSCRIHGDAAMAEATIANVLQSEDQSTGNHMLITNLYAM 501

Query: 233 CGELSDARRL 242
           CG   +++++
Sbjct: 502 CGMWDESKKV 511


>gi|15228028|ref|NP_181820.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206274|sp|Q9SJG6.1|PP200_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g42920, chloroplastic; Flags: Precursor
 gi|4512663|gb|AAD21717.1| hypothetical protein [Arabidopsis thaliana]
 gi|20197867|gb|AAM15291.1| hypothetical protein [Arabidopsis thaliana]
 gi|110738441|dbj|BAF01146.1| hypothetical protein [Arabidopsis thaliana]
 gi|330255093|gb|AEC10187.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 559

 Score =  291 bits (745), Expect = 8e-76,   Method: Compositional matrix adjust.
 Identities = 147/458 (32%), Positives = 257/458 (56%), Gaps = 3/458 (0%)

Query: 135 MKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFY--KVLRRFSISCNEFSFAGIL 192
           M +A  +F  +  ++   WNT+I G+++S   E  +  +   +    S+     ++  + 
Sbjct: 74  MNYAYLVFTRINHKNPFVWNTIIRGFSRSSFPEMAISIFIDMLCSSPSVKPQRLTYPSVF 133

Query: 193 TICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVL 252
               +L + +  RQ+HG V+  G   +  I ++++  Y  CG L +A R+F      DV+
Sbjct: 134 KAYGRLGQARDGRQLHGMVIKEGLEDDSFIRNTMLHMYVTCGCLIEAWRIFLGMIGFDVV 193

Query: 253 TWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILR 312
            W +M+ G+AK G ++ A  LF+EMP++N VSW ++I+G+ RNG  + AL++F  M    
Sbjct: 194 AWNSMIMGFAKCGLIDQAQNLFDEMPQRNGVSWNSMISGFVRNGRFKDALDMFREMQEKD 253

Query: 313 IRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGR 372
           ++P+  T  S L ACA + + + G+ +H +++R  F  N+IV+++LIDMY KCGC+ +G 
Sbjct: 254 VKPDGFTMVSLLNACAYLGASEQGRWIHEYIVRNRFELNSIVVTALIDMYCKCGCIEEGL 313

Query: 373 QVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHS 432
            VF+    K+ S  WN+MI  L  +G++E+A+ LF ++ RS ++PD ++   +L AC HS
Sbjct: 314 NVFECAPKKQLS-CWNSMILGLANNGFEERAMDLFSELERSGLEPDSVSFIGVLTACAHS 372

Query: 433 GLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNA 492
           G V     +F  M     I P+ +H+  ++ +L  AG  ++    ++ MP E D+ +W++
Sbjct: 373 GEVHRADEFFRLMKEKYMIEPSIKHYTLMVNVLGGAGLLEEAEALIKNMPVEEDTVIWSS 432

Query: 493 LHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQF 552
           L   CR  GN++M ++    L   +P  +  + LLS+ Y++ G      + R L+ ERQ 
Sbjct: 433 LLSACRKIGNVEMAKRAAKCLKKLDPDETCGYVLLSNAYASYGLFEEAVEQRLLMKERQM 492

Query: 553 KKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQL 590
           +KE   S IE++ +VH F      HP    +YS+L+ L
Sbjct: 493 EKEVGCSSIEVDFEVHEFISCGGTHPKSAEIYSLLDIL 530



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 82/364 (22%), Positives = 173/364 (47%), Gaps = 55/364 (15%)

Query: 88  TFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAE 147
           +F+ N ++ MY  CG  ++A ++F  +   ++ ++N+M+ G+A  G++  A+NLFD M +
Sbjct: 161 SFIRNTMLHMYVTCGCLIEAWRIFLGMIGFDVVAWNSMIMGFAKCGLIDQAQNLFDEMPQ 220

Query: 148 RDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQV 207
           R+ VSWN+MI G+ ++G  ++ L  ++ ++   +  + F+   +L  C  L   +  R +
Sbjct: 221 RNGVSWNSMISGFVRNGRFKDALDMFREMQEKDVKPDGFTMVSLLNACAYLGASEQGRWI 280

Query: 208 HGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDM 267
           H  ++   F  N ++ ++++D Y KCG + +   +F+    + +  W +M+ G A     
Sbjct: 281 HEYIVRNRFELNSIVVTALIDMYCKCGCIEEGLNVFECAPKKQLSCWNSMILGLAN---- 336

Query: 268 ESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCAC 327
                                      NG  ++A++LF+ +    + P+  +F   L AC
Sbjct: 337 ---------------------------NGFEERAMDLFSELERSGLEPDSVSFIGVLTAC 369

Query: 328 ASIVSLKHGKQVH-----------GFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFD 376
           A      H  +VH            ++I  + +  T+    ++++    G L +   +  
Sbjct: 370 A------HSGEVHRADEFFRLMKEKYMIEPSIKHYTL----MVNVLGGAGLLEEAEALIK 419

Query: 377 LTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVIL-NACTHSGLV 435
               +E++++W++++SA  + G  E A R    + +  + PD+    V+L NA    GL 
Sbjct: 420 NMPVEEDTVIWSSLLSACRKIGNVEMAKRAAKCLKK--LDPDETCGYVLLSNAYASYGLF 477

Query: 436 QEGL 439
           +E +
Sbjct: 478 EEAV 481



 Score =  116 bits (290), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 82/335 (24%), Positives = 148/335 (44%), Gaps = 67/335 (20%)

Query: 191 ILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARD 250
           I T C  + ELK   Q+H  ++ TG +S+ V +S ++   A C                 
Sbjct: 31  IDTQCSTMRELK---QIHASLIKTGLISDTVTASRVL---AFC----------------- 67

Query: 251 VLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMI 310
                      A   DM  A  +F  +  KNP  W T+I G++R+   + A+ +F  M+ 
Sbjct: 68  ----------CASPSDMNYAYLVFTRINHKNPFVWNTIIRGFSRSSFPEMAISIFIDMLC 117

Query: 311 --LRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCL 368
               ++P + T+ S   A   +   + G+Q+HG +I+     ++ + ++++ MY  CGCL
Sbjct: 118 SSPSVKPQRLTYPSVFKAYGRLGQARDGRQLHGMVIKEGLEDDSFIRNTMLHMYVTCGCL 177

Query: 369 NDGRQVF----------------------------DLTDN--KENSMLWNTMISALTQHG 398
            +  ++F                            +L D   + N + WN+MIS   ++G
Sbjct: 178 IEAWRIFLGMIGFDVVAWNSMIMGFAKCGLIDQAQNLFDEMPQRNGVSWNSMISGFVRNG 237

Query: 399 YDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHH 458
             + A+ +F +M    VKPD  T+  +LNAC + G  ++G    E +  +   + N    
Sbjct: 238 RFKDALDMFREMQEKDVKPDGFTMVSLLNACAYLGASEQGRWIHEYIVRNRFEL-NSIVV 296

Query: 459 ACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNAL 493
             LI++  + GC ++ +N  E  P +  S  WN++
Sbjct: 297 TALIDMYCKCGCIEEGLNVFECAPKKQLS-CWNSM 330


>gi|296088765|emb|CBI38215.3| unnamed protein product [Vitis vinifera]
          Length = 595

 Score =  291 bits (744), Expect = 8e-76,   Method: Compositional matrix adjust.
 Identities = 150/494 (30%), Positives = 265/494 (53%), Gaps = 36/494 (7%)

Query: 136 KHARNLFDNMAERDVVSWNTMIIGYAKSGAVE-EGLKFYKVLRRFSISCNEFSFAGILTI 194
           ++A +L   +   ++  +N +I G A S     EGL  YK +    I  + ++   +L  
Sbjct: 90  RYALSLLAQLRTPNLPLYNAIIRGLATSNNDSIEGLVVYKQMLSKGIVPDNYTIPFVLKA 149

Query: 195 CVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTW 254
           C +   ++   +VHGQ +  G  S+V +S++++  YA C  +  AR++FD +  RD+++W
Sbjct: 150 CAESRAVREGEEVHGQAIKMGLASDVYVSNTLMRMYAVCDVIRSARKVFDTSPQRDLVSW 209

Query: 255 TTMVSGYAKLG----------------------------------DMESASKLFNEMPEK 280
           TTM+ GY K+G                                  D   A K+F EMP K
Sbjct: 210 TTMIQGYVKMGFAREGVGLYIIRNSNVNLDVFVGNALVDMYLKCGDANFARKVFQEMPVK 269

Query: 281 NPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVH 340
           N VSW ++I+G  + G  +++L +F +M  L ++P+  T  + L +CA++  L+ GK VH
Sbjct: 270 NVVSWNSMISGLAQKGQFKESLYMFRKMQRLGVKPDDVTLVAVLNSCANLGVLELGKWVH 329

Query: 341 GFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYD 400
            +L R   R++  + ++L+DMY+KCG ++    VF    N+++   +  MI  L  HG  
Sbjct: 330 AYLDRNQIRADGFIGNALVDMYAKCGSIDQACWVFQAM-NRKDVYSYTAMIVGLAMHGQG 388

Query: 401 EQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHAC 460
            +A+ LF +M +  ++PD++T   +L AC+H GLV+EG  YFE M+    + P  EH+ C
Sbjct: 389 GKALDLFSEMPKMGIEPDEVTFVGVLTACSHVGLVEEGRKYFEDMSTIYNLRPQLEHYGC 448

Query: 461 LIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQS 520
           +++LL +AG  ++    +  MP E D+++  AL G C+IHG +++G  V+ ++    P+ 
Sbjct: 449 MVDLLGRAGLINEAEEFIRNMPIEPDAFVLGALLGACKIHGKVELGESVMKKIEKIEPRK 508

Query: 521 SATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMR 580
              + L+S+IYS+  + R   K+R+ + ER  +K    S IE++  +H F   D  HP  
Sbjct: 509 DGAYVLMSNIYSSANRWRDALKLRKTMKERNLEKTPGCSSIELDGVIHEFQKGDKSHPKI 568

Query: 581 DVLYSVLEQLAGQM 594
             +Y +L+++   +
Sbjct: 569 KEIYKLLDEIMSHL 582



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 106/429 (24%), Positives = 180/429 (41%), Gaps = 80/429 (18%)

Query: 14  NLP-NNCLIQSFLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGK 72
           NLP  N +I+   +  S     E +     +  +GI     T+ F+L+ CAES++++ G+
Sbjct: 103 NLPLYNAIIRGLAT--SNNDSIEGLVVYKQMLSKGIVPDNYTIPFVLKACAESRAVREGE 160

Query: 73  RVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANL 132
            VH    +        ++SN L+ MY  C     ARKVFD  P ++L S+  M+ GY  +
Sbjct: 161 EVHGQ-AIKMGLASDVYVSNTLMRMYAVCDVIRSARKVFDTSPQRDLVSWTTMIQGYVKM 219

Query: 133 GMMKH----------------------------------ARNLFDNMAERDVVSWNTMII 158
           G  +                                   AR +F  M  ++VVSWN+MI 
Sbjct: 220 GFAREGVGLYIIRNSNVNLDVFVGNALVDMYLKCGDANFARKVFQEMPVKNVVSWNSMIS 279

Query: 159 GYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHG-----QVLV 213
           G A+ G  +E L  ++ ++R  +  ++ +   +L  C  L  L+L + VH      Q+  
Sbjct: 280 GLAQKGQFKESLYMFRKMQRLGVKPDDVTLVAVLNSCANLGVLELGKWVHAYLDRNQIRA 339

Query: 214 TGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKL 273
            GF+ N     ++VD YAKCG +  A  +F   + +DV ++T M+ G A  G    A  L
Sbjct: 340 DGFIGN-----ALVDMYAKCGSIDQACWVFQAMNRKDVYSYTAMIVGLAMHGQGGKALDL 394

Query: 274 FNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSL 333
           F+EMP+                               + I P++ TF   L AC+ +  +
Sbjct: 395 FSEMPK-------------------------------MGIEPDEVTFVGVLTACSHVGLV 423

Query: 334 KHG-KQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMIS 392
           + G K         N R        ++D+  + G +N+  +       + ++ +   ++ 
Sbjct: 424 EEGRKYFEDMSTIYNLRPQLEHYGCMVDLLGRAGLINEAEEFIRNMPIEPDAFVLGALLG 483

Query: 393 ALTQHGYDE 401
           A   HG  E
Sbjct: 484 ACKIHGKVE 492



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 56/177 (31%), Positives = 87/177 (49%), Gaps = 6/177 (3%)

Query: 3   SNFSPRGINRKNLPNNCLIQSFLS-LISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQ 61
           +NF+ +      + N     S +S L  KGQ  E++     + + G++    TL  +L  
Sbjct: 256 ANFARKVFQEMPVKNVVSWNSMISGLAQKGQFKESLYMFRKMQRLGVKPDDVTLVAVLNS 315

Query: 62  CAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFS 121
           CA    L+LGK VH +L   Q +    F+ N L+ MY KCGS   A  VF  +  K+++S
Sbjct: 316 CANLGVLELGKWVHAYLDRNQIRA-DGFIGNALVDMYAKCGSIDQACWVFQAMNRKDVYS 374

Query: 122 YNNMLSGYANLGMMKHARNLFDNMA----ERDVVSWNTMIIGYAKSGAVEEGLKFYK 174
           Y  M+ G A  G    A +LF  M     E D V++  ++   +  G VEEG K+++
Sbjct: 375 YTAMIVGLAMHGQGGKALDLFSEMPKMGIEPDEVTFVGVLTACSHVGLVEEGRKYFE 431


>gi|297743264|emb|CBI36131.3| unnamed protein product [Vitis vinifera]
          Length = 550

 Score =  291 bits (744), Expect = 9e-76,   Method: Compositional matrix adjust.
 Identities = 144/412 (34%), Positives = 238/412 (57%), Gaps = 34/412 (8%)

Query: 187 SFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDET 246
           ++A +L  C+  + +K  +Q+H QV + GF  + VI++ +V+ Y  C  LS AR L    
Sbjct: 77  NYASLLQSCIARKAIKPGKQLHAQVCLAGFGFDTVIATKLVNLYCVCDSLSSARLL---- 132

Query: 247 DARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFT 306
                                      F+ +P+ N   W  LI GY  NG  + A++L+ 
Sbjct: 133 ---------------------------FDRIPKHNIFLWNVLIRGYAWNGPYEAAVQLYY 165

Query: 307 RMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCG 366
           +M    + P+  TF   L ACA++ +++HG+++H  +++T +  +  V ++LIDMY+KCG
Sbjct: 166 QMFDYGLVPDNFTFPFVLKACAALSAIEHGREIHEHVVQTGWEKDVFVGAALIDMYAKCG 225

Query: 367 CLNDGRQVFDLTDNKENSML--WNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAV 424
           C+   R+VFD    ++  ++  WN MI+    HG+  +A+ LF +M R + KPD IT   
Sbjct: 226 CVGSAREVFDKILVRDAVLVVSWNAMITGYAMHGHATEALDLFEEMNRVA-KPDHITFVG 284

Query: 425 ILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYE 484
           +L+AC+H GL++EG  +FE+M  D  I P  +H+ C+++LL  +G  D+  N + +M   
Sbjct: 285 VLSACSHGGLLEEGWMFFETMIRDYKIDPTVQHYTCMVDLLGHSGRLDEAYNLIMQMKVL 344

Query: 485 HDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVR 544
            DS +W AL   C+IH N+++G   +++LI+  P  +  + +LS+IY+  GK   V K+R
Sbjct: 345 PDSGVWGALLNSCKIHANVELGEIALERLIELEPDDAGNYVILSNIYAQAGKWEGVAKLR 404

Query: 545 QLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQMGE 596
           +L+ +R+ KK  A SWIE++NKVHAF   D+ HP+ D +YS LE++ G M E
Sbjct: 405 KLMTDRRLKKSIACSWIEVKNKVHAFLSGDTSHPLSDEIYSELERVGGLMKE 456



 Score =  119 bits (297), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 71/260 (27%), Positives = 127/260 (48%), Gaps = 38/260 (14%)

Query: 56  AFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIP 115
           A +LQ C   K++K GK++H  + L      T  ++  L+++Y  C S   AR +FD+IP
Sbjct: 79  ASLLQSCIARKAIKPGKQLHAQVCLAGFGFDTV-IATKLVNLYCVCDSLSSARLLFDRIP 137

Query: 116 VKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKV 175
             N+F +N ++ GYA                      WN         G  E  ++ Y  
Sbjct: 138 KHNIFLWNVLIRGYA----------------------WN---------GPYEAAVQLYYQ 166

Query: 176 LRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGE 235
           +  + +  + F+F  +L  C  L  ++  R++H  V+ TG+  +V + ++++D YAKCG 
Sbjct: 167 MFDYGLVPDNFTFPFVLKACAALSAIEHGREIHEHVVQTGWEKDVFVGAALIDMYAKCGC 226

Query: 236 LSDARRLFDETDARD---VLTWTTMVSGYAKLGDMESASKLFNEM---PEKNPVSWTTLI 289
           +  AR +FD+   RD   V++W  M++GYA  G    A  LF EM    + + +++  ++
Sbjct: 227 VGSAREVFDKILVRDAVLVVSWNAMITGYAMHGHATEALDLFEEMNRVAKPDHITFVGVL 286

Query: 290 AGYTRNGLGQKALELFTRMM 309
           +  +  GL ++    F  M+
Sbjct: 287 SACSHGGLLEEGWMFFETMI 306



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 60/233 (25%), Positives = 106/233 (45%), Gaps = 9/233 (3%)

Query: 313 IRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGR 372
           + P    ++S L +C +  ++K GKQ+H  +    F  +T++ + L+++Y  C  L+  R
Sbjct: 71  LTPTYSNYASLLQSCIARKAIKPGKQLHAQVCLAGFGFDTVIATKLVNLYCVCDSLSSAR 130

Query: 373 QVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHS 432
            +FD    K N  LWN +I     +G  E A++L++ M    + PD  T   +L AC   
Sbjct: 131 LLFDRIP-KHNIFLWNVLIRGYAWNGPYEAAVQLYYQMFDYGLVPDNFTFPFVLKACAAL 189

Query: 433 GLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYL--- 489
             ++ G    E +    G   +    A LI++ A+ GC        +K+    D+ L   
Sbjct: 190 SAIEHGREIHEHVVQT-GWEKDVFVGAALIDMYAKCGCVGSAREVFDKI-LVRDAVLVVS 247

Query: 490 WNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEK 542
           WNA+     +HG+     + +D   + N  +   H     + SA   G L+E+
Sbjct: 248 WNAMITGYAMHGH---ATEALDLFEEMNRVAKPDHITFVGVLSACSHGGLLEE 297



 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 65/238 (27%), Positives = 122/238 (51%), Gaps = 16/238 (6%)

Query: 54  TLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDK 113
           T  F+L+ CA   +++ G+ +H H+  T  +    F+   LI MY KCG    AR+VFDK
Sbjct: 178 TFPFVLKACAALSAIEHGREIHEHVVQTGWEK-DVFVGAALIDMYAKCGCVGSAREVFDK 236

Query: 114 IPVKN---LFSYNNMLSGYANLGMMKHARNLFDNM---AERDVVSWNTMIIGYAKSGAVE 167
           I V++   + S+N M++GYA  G    A +LF+ M   A+ D +++  ++   +  G +E
Sbjct: 237 ILVRDAVLVVSWNAMITGYAMHGHATEALDLFEEMNRVAKPDHITFVGVLSACSHGGLLE 296

Query: 168 EGLKFYK-VLRRFSISCNEFSFAGILTI---CVKLEE-LKLTRQVHGQVLVTGFLSNVVI 222
           EG  F++ ++R + I      +  ++ +     +L+E   L  Q+  +VL    +   ++
Sbjct: 297 EGWMFFETMIRDYKIDPTVQHYTCMVDLLGHSGRLDEAYNLIMQM--KVLPDSGVWGALL 354

Query: 223 SSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEK 280
           +S  + A  + GE++  R +  E +  D   +  + + YA+ G  E  +KL   M ++
Sbjct: 355 NSCKIHANVELGEIALERLI--ELEPDDAGNYVILSNIYAQAGKWEGVAKLRKLMTDR 410


>gi|224103137|ref|XP_002312939.1| predicted protein [Populus trichocarpa]
 gi|222849347|gb|EEE86894.1| predicted protein [Populus trichocarpa]
          Length = 610

 Score =  291 bits (744), Expect = 9e-76,   Method: Compositional matrix adjust.
 Identities = 173/590 (29%), Positives = 284/590 (48%), Gaps = 108/590 (18%)

Query: 80  LTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYAN---LGMMK 136
             Q +   T   N +I  Y K      ARK+FD++P +++ S+N M+SGY +   +  +K
Sbjct: 20  FDQMEETNTVSWNAIIRAYVKRREIAKARKLFDEMPQRDIVSWNLMISGYVSCHGIRFLK 79

Query: 137 HARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILT--- 193
             RNLFD M ERD+VSWNTMI GYAK+G ++E L+ +K++    +        G L    
Sbjct: 80  EGRNLFDRMPERDIVSWNTMISGYAKNGRMDEALRMFKLMPEGDVVSWNAIVTGFLQNGD 139

Query: 194 ICVKLEELKLTRQVHG---QVLVTGFLSN--------VVIS---------------SSIV 227
           +   +E  +   +        LV+G + N        VV+                ++++
Sbjct: 140 VARAIEYFERMPERDAASLSALVSGLIRNGELDEAARVVVRFERDGGRKENLLQAYNTLI 199

Query: 228 DAYAKCGELSDARRLFDETD---------------------------------------- 247
             Y +   + +AR+LFD+                                          
Sbjct: 200 AGYGRRDRVDEARKLFDQIPFCDGKGKGGDGRFGRNVVSWNTMIMCYVKAGNIVFARELF 259

Query: 248 ----ARDVLTWTTMVSGYAKLGDMESASKLFNE--------------------------- 276
                RD ++W TM+SGY  + DM+ AS+LF E                           
Sbjct: 260 DQMMERDTISWNTMISGYVNMLDMDEASRLFCEMPNPDIFSWNKMIAGHAQIGDLDRVND 319

Query: 277 ----MPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVS 332
               MP+KN VSW ++I GY +N     A+++F +M +   +P++HT SS L   A IV 
Sbjct: 320 LFGRMPQKNLVSWNSVITGYEKNDDYIGAIKIFIQMQVEGEKPDRHTLSSVLSVSAGIVD 379

Query: 333 LKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMIS 392
           L+ G Q+H  + +T    +  + ++LI MYS+CG + +   +FD    ++  + WN MI 
Sbjct: 380 LQLGMQIHQLVTKTVI-PDVPINNALITMYSRCGAIIEAGTIFDEVKLQKEVISWNAMIG 438

Query: 393 ALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGII 452
               HGY  +A+ +F  M    V+P  IT   +L+AC H+GLV+EG   FESM  + GI 
Sbjct: 439 GYASHGYAVEALEVFKLMKSFDVRPTHITFISVLHACAHAGLVEEGREIFESMADEFGIE 498

Query: 453 PNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQ 512
           P+ EH+A L++++++ G  +Q ++ +  MP+E D  +W AL    ++H  I++ R   + 
Sbjct: 499 PSVEHYASLVDIMSRHGQLEQALDLINSMPFEPDKAVWGALLSAAKVHNKIEVARVAAEA 558

Query: 513 LIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIE 562
           LI   P SSA + LL ++Y+ +G+     +VR ++     KK+ A SW++
Sbjct: 559 LIRLEPDSSAPYVLLYNMYADVGQWDSAAEVRIMMERSNIKKQAAYSWVD 608



 Score =  122 bits (306), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 85/361 (23%), Positives = 167/361 (46%), Gaps = 36/361 (9%)

Query: 68  LKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLS 127
           +K G  V       Q     T   N +IS Y       +A ++F ++P  ++FS+N M++
Sbjct: 247 VKAGNIVFARELFDQMMERDTISWNTMISGYVNMLDMDEASRLFCEMPNPDIFSWNKMIA 306

Query: 128 GYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFS 187
           G+A +G +    +LF  M ++++VSWN++I GY K+      +K +  ++      +  +
Sbjct: 307 GHAQIGDLDRVNDLFGRMPQKNLVSWNSVITGYEKNDDYIGAIKIFIQMQVEGEKPDRHT 366

Query: 188 FAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETD 247
            + +L++   + +L+L  Q+H Q++    + +V I+++++  Y++CG + +A  +FDE  
Sbjct: 367 LSSVLSVSAGIVDLQLGMQIH-QLVTKTVIPDVPINNALITMYSRCGAIIEAGTIFDEVK 425

Query: 248 -ARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFT 306
             ++V++W  M+ GYA                                +G   +ALE+F 
Sbjct: 426 LQKEVISWNAMIGGYAS-------------------------------HGYAVEALEVFK 454

Query: 307 RMMILRIRPNQHTFSSCLCACASIVSLKHGKQV-HGFLIRTNFRSNTIVMSSLIDMYSKC 365
            M    +RP   TF S L ACA    ++ G+++            +    +SL+D+ S+ 
Sbjct: 455 LMKSFDVRPTHITFISVLHACAHAGLVEEGREIFESMADEFGIEPSVEHYASLVDIMSRH 514

Query: 366 GCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVI 425
           G L     + +    + +  +W  ++SA   H   E A      ++R  ++PD     V+
Sbjct: 515 GQLEQALDLINSMPFEPDKAVWGALLSAAKVHNKIEVARVAAEALIR--LEPDSSAPYVL 572

Query: 426 L 426
           L
Sbjct: 573 L 573



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 94/385 (24%), Positives = 159/385 (41%), Gaps = 64/385 (16%)

Query: 123 NNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSIS 182
           N  +S  A  G +  AR LFD M E + VSWN +I  Y K   + +  K +         
Sbjct: 1   NKKISNLAKNGRIDEARALFDQMEETNTVSWNAIIRAYVKRREIAKARKLF--------- 51

Query: 183 CNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRL 242
                           +E+     V   ++++G++S   I             L + R L
Sbjct: 52  ----------------DEMPQRDIVSWNLMISGYVSCHGIRF-----------LKEGRNL 84

Query: 243 FDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKAL 302
           FD    RD+++W TM+SGYAK G M+ A ++F  MPE + VSW  ++ G+ +NG   +A+
Sbjct: 85  FDRMPERDIVSWNTMISGYAKNGRMDEALRMFKLMPEGDVVSWNAIVTGFLQNGDVARAI 144

Query: 303 ELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMS--SLID 360
           E F RM       +  + S+ +        L    +V     R   R   ++ +  +LI 
Sbjct: 145 EYFERMP----ERDAASLSALVSGLIRNGELDEAARVVVRFERDGGRKENLLQAYNTLIA 200

Query: 361 MYSKCGCLNDGRQVFD------------LTDNKENSMLWNTMISALTQHGYDEQAIRLFH 408
            Y +   +++ R++FD                  N + WNTMI    + G    A  LF 
Sbjct: 201 GYGRRDRVDEARKLFDQIPFCDGKGKGGDGRFGRNVVSWNTMIMCYVKAGNIVFARELFD 260

Query: 409 DMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQA 468
            M+      D I+   +++   +   + E    F  M +     P+      +I   AQ 
Sbjct: 261 QMMER----DTISWNTMISGYVNMLDMDEASRLFCEMPN-----PDIFSWNKMIAGHAQI 311

Query: 469 GCSDQLMNQLEKMPYEHDSYLWNAL 493
           G  D++ +   +MP + +   WN++
Sbjct: 312 GDLDRVNDLFGRMP-QKNLVSWNSV 335


>gi|356502400|ref|XP_003520007.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31430-like [Glycine max]
          Length = 591

 Score =  291 bits (744), Expect = 9e-76,   Method: Compositional matrix adjust.
 Identities = 173/570 (30%), Positives = 291/570 (51%), Gaps = 47/570 (8%)

Query: 4   NFSPRGINRKNLPN----NCLIQSFLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFIL 59
           N++ R  N  + P+    N +I++F   + +G L  AIS    L +RG+     T  ++L
Sbjct: 59  NYANRIFNHIHHPSLFIYNLMIKAF---VKRGSLRSAISLFQQLRERGVWPDNYTYPYVL 115

Query: 60  QQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNL 119
           +       ++ G+++H                    +   K G + D             
Sbjct: 116 KGIGCIGEVREGEKIH--------------------AFVVKTGLEFDP------------ 143

Query: 120 FSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRF 179
           +  N+++  YA LG+++    +F+ M ERD VSWN MI GY +    EE +  Y+ ++  
Sbjct: 144 YVCNSLMDMYAELGLVEGFTQVFEEMPERDAVSWNIMISGYVRCKRFEEAVDVYRRMQME 203

Query: 180 S-ISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSD 238
           S    NE +    L+ C  L  L+L +++H  +     L+ + + ++++D Y KCG +S 
Sbjct: 204 SNEKPNEATVVSTLSACAVLRNLELGKEIHDYIANELDLTPI-MGNALLDMYCKCGCVSV 262

Query: 239 ARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLG 298
           AR +FD    ++V  WT+MV+GY   G ++ A  LF   P ++ V WT +I GY +    
Sbjct: 263 AREIFDAMIVKNVNCWTSMVTGYVICGQLDQARYLFERSPSRDVVLWTAMINGYVQFNHF 322

Query: 299 QKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSL 358
           + A+ LF  M I  + P++    + L  CA + +L+ GK +H ++     + + +V ++L
Sbjct: 323 EDAIALFGEMQIRGVEPDKFIVVTLLTGCAQLGALEQGKWIHNYIDENRIKMDAVVSTAL 382

Query: 359 IDMYSKCGCLNDGRQVFD-LTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKP 417
           I+MY+KCGC+    ++F+ L D    S  W ++I  L  +G   +A+ LF  M    +KP
Sbjct: 383 IEMYAKCGCIEKSLEIFNGLKDMDTTS--WTSIICGLAMNGKTSEALELFEAMQTCGLKP 440

Query: 418 DKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQ 477
           D IT   +L+AC H+GLV+EG   F SM+    I PN EH+ C I+LL +AG   +    
Sbjct: 441 DDITFVAVLSACGHAGLVEEGRKLFHSMSSIYHIEPNLEHYGCFIDLLGRAGLLQEAEEL 500

Query: 478 LEKMPYEHDSY---LWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSAL 534
           ++K+P +++     L+ AL   CR +GNIDMG ++   L       S+ H LL+SIY++ 
Sbjct: 501 VKKLPDQNNEIIVPLYGALLSACRTYGNIDMGERLATALAKVKSSDSSLHTLLASIYASA 560

Query: 535 GKGRLVEKVRQLINERQFKKEQAISWIEIE 564
            +   V KVR  + +   KK    S IE++
Sbjct: 561 DRWEDVRKVRSKMKDLGIKKVPGYSAIEVD 590



 Score =  135 bits (340), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 104/453 (22%), Positives = 197/453 (43%), Gaps = 73/453 (16%)

Query: 130 ANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFA 189
           ++LG   +A  +F+++    +  +N MI  + K G++   +  ++ LR   +  + +++ 
Sbjct: 53  SSLGDFNYANRIFNHIHHPSLFIYNLMIKAFVKRGSLRSAISLFQQLRERGVWPDNYTYP 112

Query: 190 GILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDAR 249
            +L     + E++   ++H  V+ TG   +  + +S++D YA+ G +    ++F+E   R
Sbjct: 113 YVLKGIGCIGEVREGEKIHAFVVKTGLEFDPYVCNSLMDMYAELGLVEGFTQVFEEMPER 172

Query: 250 DVLTWTTMVSGYAKLGDMESASKLFNEMP-EKNPVSWTTLIAGYTRNGLGQKALELFTRM 308
           D ++W  M+SGY +    E A  ++  M  E N                           
Sbjct: 173 DAVSWNIMISGYVRCKRFEEAVDVYRRMQMESNE-------------------------- 206

Query: 309 MILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCL 368
                +PN+ T  S L ACA + +L+ GK++H + I        I+ ++L+DMY KCGC+
Sbjct: 207 -----KPNEATVVSTLSACAVLRNLELGKEIHDY-IANELDLTPIMGNALLDMYCKCGCV 260

Query: 369 NDGRQVFDLTDNK------------------------------ENSMLWNTMISALTQHG 398
           +  R++FD    K                               + +LW  MI+   Q  
Sbjct: 261 SVAREIFDAMIVKNVNCWTSMVTGYVICGQLDQARYLFERSPSRDVVLWTAMINGYVQFN 320

Query: 399 YDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHH 458
           + E AI LF +M    V+PDK  +  +L  C   G +++G  +  +   +  I  +    
Sbjct: 321 HFEDAIALFGEMQIRGVEPDKFIVVTLLTGCAQLGALEQG-KWIHNYIDENRIKMDAVVS 379

Query: 459 ACLIELLAQAGC---SDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLID 515
             LIE+ A+ GC   S ++ N L+ M    D+  W ++     ++G      ++ + +  
Sbjct: 380 TALIEMYAKCGCIEKSLEIFNGLKDM----DTTSWTSIICGLAMNGKTSEALELFEAM-- 433

Query: 516 QNPQSSATHGLLSSIYSALGKGRLVEKVRQLIN 548
           Q            ++ SA G   LVE+ R+L +
Sbjct: 434 QTCGLKPDDITFVAVLSACGHAGLVEEGRKLFH 466



 Score = 90.5 bits (223), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 60/265 (22%), Positives = 131/265 (49%), Gaps = 5/265 (1%)

Query: 249 RDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRM 308
           RD+L      S  + LGD   A+++FN +   +   +  +I  + + G  + A+ LF ++
Sbjct: 40  RDILNKLMAFSMDSSLGDFNYANRIFNHIHHPSLFIYNLMIKAFVKRGSLRSAISLFQQL 99

Query: 309 MILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCL 368
               + P+ +T+   L     I  ++ G+++H F+++T    +  V +SL+DMY++ G +
Sbjct: 100 RERGVWPDNYTYPYVLKGIGCIGEVREGEKIHAFVVKTGLEFDPYVCNSLMDMYAELGLV 159

Query: 369 NDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDM-VRSSVKPDKITLAVILN 427
               QVF+    + +++ WN MIS   +    E+A+ ++  M + S+ KP++ T+   L+
Sbjct: 160 EGFTQVFEEMPER-DAVSWNIMISGYVRCKRFEEAVDVYRRMQMESNEKPNEATVVSTLS 218

Query: 428 ACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDS 487
           AC     ++ G    + + ++L + P   +   L+++  + GC        + M  ++ +
Sbjct: 219 ACAVLRNLELGKEIHDYIANELDLTPIMGN--ALLDMYCKCGCVSVAREIFDAMIVKNVN 276

Query: 488 YLWNALHGVCRIHGNIDMGRKVVDQ 512
             W ++     I G +D  R + ++
Sbjct: 277 -CWTSMVTGYVICGQLDQARYLFER 300


>gi|242092564|ref|XP_002436772.1| hypothetical protein SORBIDRAFT_10g008520 [Sorghum bicolor]
 gi|241914995|gb|EER88139.1| hypothetical protein SORBIDRAFT_10g008520 [Sorghum bicolor]
          Length = 825

 Score =  291 bits (744), Expect = 9e-76,   Method: Compositional matrix adjust.
 Identities = 153/466 (32%), Positives = 258/466 (55%), Gaps = 32/466 (6%)

Query: 125 MLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCN 184
           +L  YA  G ++ AR +F+ +   DV+ W+ +I  YA+S   E+  + +  + R S+  N
Sbjct: 292 LLDMYAKCGYIEDARTVFEIIPHDDVILWSFLISRYAQSYQNEQAFEMFLRMMRSSVVPN 351

Query: 185 EFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFD 244
           EFS +G+L  C  +  L L +Q+H  V+  G+ S + + ++++D YAKC           
Sbjct: 352 EFSLSGVLQACANVAFLDLGQQIHNLVIKLGYESELFVGNALMDVYAKCR---------- 401

Query: 245 ETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALEL 304
                                +ME++ ++F  + + N VSW T+I GY ++G  + AL +
Sbjct: 402 ---------------------NMENSLEIFRSLRDANEVSWNTIIVGYCQSGFAEDALSV 440

Query: 305 FTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSK 364
           F  M    +   Q TFSS L ACA+  S+KH  Q+H  + ++ F ++TIV +SLID Y+K
Sbjct: 441 FQEMRAAHVLSTQVTFSSVLRACANTASIKHTVQIHSLIEKSTFNNDTIVCNSLIDTYAK 500

Query: 365 CGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAV 424
           CGC+ D  +VF+ +  + + + WN +IS    HG    A+ LF+ M +S  KP+ +T   
Sbjct: 501 CGCIRDALKVFE-SIIQCDVVSWNAIISGYALHGRATDALELFNRMNKSDTKPNDVTFVA 559

Query: 425 ILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYE 484
           +L+ C  +GLV +GL+ F SMT D  I P+ +H+ C++ LL +AG  +  +  +  +P  
Sbjct: 560 LLSVCGSTGLVNQGLSLFNSMTMDHRIKPSMDHYTCIVRLLGRAGRLNDALKFIGDIPST 619

Query: 485 HDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVR 544
               +W AL   C +H N+ +G+   +++++  PQ   T+ LLS++Y+A G    V  +R
Sbjct: 620 PSPMVWRALLSSCVVHKNVALGKFSAEKVLEIEPQDETTYVLLSNMYAAAGILDQVALLR 679

Query: 545 QLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQL 590
           + +     KKE  +SW+EI+ +VHAFSV  + HP   ++ ++LE L
Sbjct: 680 KSMRNIGVKKEVGLSWVEIKGEVHAFSVGSADHPDMRIINAMLEWL 725



 Score =  179 bits (455), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 144/523 (27%), Positives = 229/523 (43%), Gaps = 109/523 (20%)

Query: 1   MPSNFSPRGINRKNLPNNCLIQSFLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQ 60
           +P+   P    R+NL  N  +Q          L + ++SL L      +L +   A +LQ
Sbjct: 10  LPTFSQPNVPLRRNLAANAALQ---------WLDDELASLAL-----PKLDSYACARLLQ 55

Query: 61  QCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLF 120
           +C      + G+ VH   ++ QR                                  + F
Sbjct: 56  RCIARGDARAGRAVHA--RVVQRGGVAQL----------------------------DTF 85

Query: 121 SYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFS 180
             N +L+ YA LG +  AR LFD M ER++VS+ T++ GYA  G  EE    ++ L+R  
Sbjct: 86  CANVLLNLYAKLGPLAAARRLFDGMPERNMVSFVTLVQGYALRGGFEEAAGLFRRLQREG 145

Query: 181 ISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDAR 240
              N F    IL + V ++   LT  +H      G   N  + SS++DAY+ CG +S AR
Sbjct: 146 HEVNHFVLTTILKVLVAMDAPGLTCCIHACACKLGHDRNAFVGSSLIDAYSLCGAVSHAR 205

Query: 241 RLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQK 300
            +FD    +D +TWT MVS Y++           N++PE                     
Sbjct: 206 CVFDGIIWKDAVTWTAMVSCYSE-----------NDIPE--------------------D 234

Query: 301 ALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLID 360
           AL  F++M +   +PN    +S L A   + S   GK +HG  ++T   +   V  +L+D
Sbjct: 235 ALNTFSKMRMAGAKPNPFVLTSVLKAAVCLSSAVLGKGIHGCAVKTLCDTEPHVGGALLD 294

Query: 361 MYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKI 420
           MY+KCG + D R VF++  + ++ +LW+ +IS   Q   +EQA  +F  M+RSSV P++ 
Sbjct: 295 MYAKCGYIEDARTVFEIIPH-DDVILWSFLISRYAQSYQNEQAFEMFLRMMRSSVVPNEF 353

Query: 421 TLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEK 480
           +L+ +L AC +   +            DLG                      Q+ N + K
Sbjct: 354 SLSGVLQACANVAFL------------DLG---------------------QQIHNLVIK 380

Query: 481 MPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSAT 523
           + YE + ++ NAL  V     N++   ++   L D N  S  T
Sbjct: 381 LGYESELFVGNALMDVYAKCRNMENSLEIFRSLRDANEVSWNT 423



 Score =  159 bits (403), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 104/391 (26%), Positives = 185/391 (47%), Gaps = 46/391 (11%)

Query: 117 KNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVL 176
           +N F  ++++  Y+  G + HAR +FD +  +D V+W  M+  Y+++   E+ L  +  +
Sbjct: 183 RNAFVGSSLIDAYSLCGAVSHARCVFDGIIWKDAVTWTAMVSCYSENDIPEDALNTFSKM 242

Query: 177 RRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGEL 236
           R      N F    +L   V L    L + +HG  + T   +   +  +++D YAKCG +
Sbjct: 243 RMAGAKPNPFVLTSVLKAAVCLSSAVLGKGIHGCAVKTLCDTEPHVGGALLDMYAKCGYI 302

Query: 237 SDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNG 296
            DAR +F+     DV+ W+ ++S YA+                            Y    
Sbjct: 303 EDARTVFEIIPHDDVILWSFLISRYAQ---------------------------SYQ--- 332

Query: 297 LGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMS 356
             ++A E+F RMM   + PN+ + S  L ACA++  L  G+Q+H  +I+  + S   V +
Sbjct: 333 -NEQAFEMFLRMMRSSVVPNEFSLSGVLQACANVAFLDLGQQIHNLVIKLGYESELFVGN 391

Query: 357 SLIDMYSKCGCLNDGRQVF-DLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSV 415
           +L+D+Y+KC  + +  ++F  L D  E S  WNT+I    Q G+ E A+ +F +M  + V
Sbjct: 392 ALMDVYAKCRNMENSLEIFRSLRDANEVS--WNTIIVGYCQSGFAEDALSVFQEMRAAHV 449

Query: 416 KPDKITLAVILNACTHSGLVQEGL---TYFESMTHDLGIIPNQEHHAC--LIELLAQAGC 470
              ++T + +L AC ++  ++  +   +  E  T       N +   C  LI+  A+ GC
Sbjct: 450 LSTQVTFSSVLRACANTASIKHTVQIHSLIEKSTF------NNDTIVCNSLIDTYAKCGC 503

Query: 471 SDQLMNQLEKMPYEHDSYLWNALHGVCRIHG 501
               +   E +  + D   WNA+     +HG
Sbjct: 504 IRDALKVFESI-IQCDVVSWNAIISGYALHG 533



 Score =  125 bits (313), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 86/313 (27%), Positives = 156/313 (49%), Gaps = 41/313 (13%)

Query: 17  NNCLIQSFL-SLISKGQLSEAISSLDLLAQRGIRLPAE-TLAFILQQCAESKSLKLGKRV 74
           ++ ++ SFL S  ++   +E    + L   R   +P E +L+ +LQ CA    L LG+++
Sbjct: 315 DDVILWSFLISRYAQSYQNEQAFEMFLRMMRSSVVPNEFSLSGVLQACANVAFLDLGQQI 374

Query: 75  H-LHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLG 133
           H L +KL        F+ N L+ +Y KC +                              
Sbjct: 375 HNLVIKLGYESE--LFVGNALMDVYAKCRN------------------------------ 402

Query: 134 MMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILT 193
            M+++  +F ++ + + VSWNT+I+GY +SG  E+ L  ++ +R   +   + +F+ +L 
Sbjct: 403 -MENSLEIFRSLRDANEVSWNTIIVGYCQSGFAEDALSVFQEMRAAHVLSTQVTFSSVLR 461

Query: 194 ICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLT 253
            C     +K T Q+H  +  + F ++ ++ +S++D YAKCG + DA ++F+     DV++
Sbjct: 462 ACANTASIKHTVQIHSLIEKSTFNNDTIVCNSLIDTYAKCGCIRDALKVFESIIQCDVVS 521

Query: 254 WTTMVSGYAKLGDMESASKLFNEM----PEKNPVSWTTLIAGYTRNGLGQKALELFTRM- 308
           W  ++SGYA  G    A +LFN M     + N V++  L++     GL  + L LF  M 
Sbjct: 522 WNAIISGYALHGRATDALELFNRMNKSDTKPNDVTFVALLSVCGSTGLVNQGLSLFNSMT 581

Query: 309 MILRIRPNQHTFS 321
           M  RI+P+   ++
Sbjct: 582 MDHRIKPSMDHYT 594



 Score = 62.4 bits (150), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 60/235 (25%), Positives = 108/235 (45%), Gaps = 18/235 (7%)

Query: 54  TLAFILQQCAESKSLKLGKRVHLHLKLTQRKT--PTTFLSNHLISMYFKCGSDVDARKVF 111
           T + +L+ CA + S+K   ++H    L ++ T    T + N LI  Y KCG   DA KVF
Sbjct: 455 TFSSVLRACANTASIKHTVQIH---SLIEKSTFNNDTIVCNSLIDTYAKCGCIRDALKVF 511

Query: 112 DKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDV----VSWNTMIIGYAKSGAVE 167
           + I   ++ S+N ++SGYA  G    A  LF+ M + D     V++  ++     +G V 
Sbjct: 512 ESIIQCDVVSWNAIISGYALHGRATDALELFNRMNKSDTKPNDVTFVALLSVCGSTGLVN 571

Query: 168 EGLKFYKVL---RRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVT--GFLSNVVI 222
           +GL  +  +    R   S + ++   I+ +  +   L    +  G +  T    +   ++
Sbjct: 572 QGLSLFNSMTMDHRIKPSMDHYTC--IVRLLGRAGRLNDALKFIGDIPSTPSPMVWRALL 629

Query: 223 SSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEM 277
           SS +V      G+ S  + L  E + +D  T+  + + YA  G ++  + L   M
Sbjct: 630 SSCVVHKNVALGKFSAEKVL--EIEPQDETTYVLLSNMYAAAGILDQVALLRKSM 682


>gi|15233584|ref|NP_193218.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75274931|sp|O23337.1|PP311_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g14820
 gi|2244839|emb|CAB10261.1| hypothetical protein [Arabidopsis thaliana]
 gi|7268228|emb|CAB78524.1| hypothetical protein [Arabidopsis thaliana]
 gi|332658106|gb|AEE83506.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 722

 Score =  291 bits (744), Expect = 9e-76,   Method: Compositional matrix adjust.
 Identities = 145/475 (30%), Positives = 263/475 (55%), Gaps = 1/475 (0%)

Query: 120 FSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRF 179
           F     +  YA+ G + +ARN+FD M+ RDVV+WNTMI  Y + G V+E  K ++ ++  
Sbjct: 147 FVETGFMDMYASCGRINYARNVFDEMSHRDVVTWNTMIERYCRFGLVDEAFKLFEEMKDS 206

Query: 180 SISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDA 239
           ++  +E     I++ C +   ++  R ++  ++      +  + +++V  YA  G +  A
Sbjct: 207 NVMPDEMILCNIVSACGRTGNMRYNRAIYEFLIENDVRMDTHLLTALVTMYAGAGCMDMA 266

Query: 240 RRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQ 299
           R  F +   R++   T MVSGY+K G ++ A  +F++  +K+ V WTT+I+ Y  +   Q
Sbjct: 267 REFFRKMSVRNLFVSTAMVSGYSKCGRLDDAQVIFDQTEKKDLVCWTTMISAYVESDYPQ 326

Query: 300 KALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLI 359
           +AL +F  M    I+P+  +  S + ACA++  L   K VH  +      S   + ++LI
Sbjct: 327 EALRVFEEMCCSGIKPDVVSMFSVISACANLGILDKAKWVHSCIHVNGLESELSINNALI 386

Query: 360 DMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDK 419
           +MY+KCG L+  R VF+    + N + W++MI+AL+ HG    A+ LF  M + +V+P++
Sbjct: 387 NMYAKCGGLDATRDVFEKMP-RRNVVSWSSMINALSMHGEASDALSLFARMKQENVEPNE 445

Query: 420 ITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLE 479
           +T   +L  C+HSGLV+EG   F SMT +  I P  EH+ C+++L  +A    + +  +E
Sbjct: 446 VTFVGVLYGCSHSGLVEEGKKIFASMTDEYNITPKLEHYGCMVDLFGRANLLREALEVIE 505

Query: 480 KMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRL 539
            MP   +  +W +L   CRIHG +++G+    ++++  P       L+S+IY+   +   
Sbjct: 506 SMPVASNVVIWGSLMSACRIHGELELGKFAAKRILELEPDHDGALVLMSNIYAREQRWED 565

Query: 540 VEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQM 594
           V  +R+++ E+   KE+ +S I+   K H F + D  H   + +Y+ L+++  ++
Sbjct: 566 VRNIRRVMEEKNVFKEKGLSRIDQNGKSHEFLIGDKRHKQSNEIYAKLDEVVSKL 620



 Score =  155 bits (391), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 97/370 (26%), Positives = 187/370 (50%), Gaps = 12/370 (3%)

Query: 137 HARNLFDNM-AERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTIC 195
           +A N+F ++ +  + + +N  +   ++S      + FY+ +R      ++FSF  IL   
Sbjct: 62  YALNVFSSIPSPPESIVFNPFLRDLSRSSEPRATILFYQRIRHVGGRLDQFSFLPILKAV 121

Query: 196 VKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWT 255
            K+  L    ++HG       L +  + +  +D YA CG ++ AR +FDE   RDV+TW 
Sbjct: 122 SKVSALFEGMELHGVAFKIATLCDPFVETGFMDMYASCGRINYARNVFDEMSHRDVVTWN 181

Query: 256 TMVSGYAKLGDMESASKLFNEMPEKNPVS----WTTLIAGYTRNGLGQKALELFTRMMIL 311
           TM+  Y + G ++ A KLF EM + N +        +++   R G  +    ++  ++  
Sbjct: 182 TMIERYCRFGLVDEAFKLFEEMKDSNVMPDEMILCNIVSACGRTGNMRYNRAIYEFLIEN 241

Query: 312 RIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDG 371
            +R + H  ++ +   A    +   ++   F  + + R N  V ++++  YSKCG L+D 
Sbjct: 242 DVRMDTHLLTALVTMYAGAGCMDMARE---FFRKMSVR-NLFVSTAMVSGYSKCGRLDDA 297

Query: 372 RQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTH 431
           + +FD T+ K++ + W TMISA  +  Y ++A+R+F +M  S +KPD +++  +++AC +
Sbjct: 298 QVIFDQTE-KKDLVCWTTMISAYVESDYPQEALRVFEEMCCSGIKPDVVSMFSVISACAN 356

Query: 432 SGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWN 491
            G++ +   +  S  H  G+      +  LI + A+ G  D   +  EKMP   +   W+
Sbjct: 357 LGILDKA-KWVHSCIHVNGLESELSINNALINMYAKCGGLDATRDVFEKMP-RRNVVSWS 414

Query: 492 ALHGVCRIHG 501
           ++     +HG
Sbjct: 415 SMINALSMHG 424



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 88/382 (23%), Positives = 172/382 (45%), Gaps = 36/382 (9%)

Query: 18  NCLIQSFLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLH 77
           N +I+ +      G + EA    + +    +      L  I+  C  + +++  + ++  
Sbjct: 181 NTMIERYCRF---GLVDEAFKLFEEMKDSNVMPDEMILCNIVSACGRTGNMRYNRAIYEF 237

Query: 78  LKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKH 137
           L     +  T  L+  L++MY   G    AR+ F K+ V+NLF    M+SGY+  G +  
Sbjct: 238 LIENDVRMDTHLLTA-LVTMYAGAGCMDMAREFFRKMSVRNLFVSTAMVSGYSKCGRLDD 296

Query: 138 ARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVK 197
           A+ +FD   ++D+V W TMI  Y +S   +E L+ ++ +    I  +  S   +++ C  
Sbjct: 297 AQVIFDQTEKKDLVCWTTMISAYVESDYPQEALRVFEEMCCSGIKPDVVSMFSVISACAN 356

Query: 198 LEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTM 257
           L  L   + VH  + V G  S + I++++++ YAKCG L   R +F++   R+V++W++M
Sbjct: 357 LGILDKAKWVHSCIHVNGLESELSINNALINMYAKCGGLDATRDVFEKMPRRNVVSWSSM 416

Query: 258 VSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQ 317
           ++  +  G+   A  LF  M ++N                               + PN+
Sbjct: 417 INALSMHGEASDALSLFARMKQEN-------------------------------VEPNE 445

Query: 318 HTFSSCLCACASIVSLKHGKQVHGFLI-RTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFD 376
            TF   L  C+    ++ GK++   +    N          ++D++ +   L +  +V +
Sbjct: 446 VTFVGVLYGCSHSGLVEEGKKIFASMTDEYNITPKLEHYGCMVDLFGRANLLREALEVIE 505

Query: 377 LTDNKENSMLWNTMISALTQHG 398
                 N ++W +++SA   HG
Sbjct: 506 SMPVASNVVIWGSLMSACRIHG 527


>gi|359481504|ref|XP_002274656.2| PREDICTED: pentatricopeptide repeat-containing protein At5g42450,
           mitochondrial-like [Vitis vinifera]
          Length = 538

 Score =  291 bits (744), Expect = 9e-76,   Method: Compositional matrix adjust.
 Identities = 151/464 (32%), Positives = 260/464 (56%), Gaps = 1/464 (0%)

Query: 124 NMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISC 183
           +++  Y+    +  A  LFD +   DVVS    I  +A+    EE + F+  +   +I  
Sbjct: 50  DIVCSYSASKALWDACKLFDEVPNWDVVSATATIGCFARYHHHEEAIYFFSRMLALNIKP 109

Query: 184 NEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLF 243
           N+FSF  ++     L++L   RQ+H   +  G  SNV + S++VD YAK   +++A++ F
Sbjct: 110 NQFSFGTVIPSSTALQDLNSGRQLHACAIKMGLESNVFVGSAVVDFYAKLTSINEAQKAF 169

Query: 244 DETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALE 303
           ++T   +V+++TT++ GY K    + A  LF +MPE+N VSW  +I+GY++ G  ++A+ 
Sbjct: 170 EDTHEPNVVSYTTLIRGYLKKERFDDALALFRKMPERNVVSWNAMISGYSQMGYNEEAVN 229

Query: 304 LFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYS 363
           LF  M+     PN+ TF   + A A+I +L  G+  HG  ++   + +  + +SL+  Y+
Sbjct: 230 LFVVMLREGTLPNERTFPCAISAVANIAALGMGRSFHGSAVKFLGKFDVFIGNSLVSFYA 289

Query: 364 KCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLA 423
           KCG + +   VF+ T  K+N + WN +I     HG   +AI  F  M  + ++P+ +TL 
Sbjct: 290 KCGSMEESLLVFN-TLPKKNIVSWNALICGYANHGRGMEAIYFFEKMQDTGLRPNSVTLL 348

Query: 424 VILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPY 483
            +L AC HSGLV +G +YF     +   +   EHHAC+++LL+++G   +    L ++P+
Sbjct: 349 GLLLACNHSGLVDKGYSYFNKARVEEPGLLTPEHHACMVDLLSRSGRFKEAEKFLHELPF 408

Query: 484 EHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKV 543
                 W AL G CRIH N+++G     +++  +P+  +++ +LS+ +SA G+ + V  +
Sbjct: 409 VPGIGFWKALLGGCRIHSNMELGELAARKILALDPEDVSSYVMLSNAHSAAGRWQSVSMI 468

Query: 544 RQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVL 587
           R+ + E++ K     SWIEI +KVH F   D  H   D +Y VL
Sbjct: 469 RKEMREKRMKGVPGSSWIEIRSKVHIFVTGDRNHDQHDEIYQVL 512



 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 64/227 (28%), Positives = 108/227 (47%), Gaps = 4/227 (1%)

Query: 88  TFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAE 147
            F+ + ++  Y K  S  +A+K F+     N+ SY  ++ GY        A  LF  M E
Sbjct: 146 VFVGSAVVDFYAKLTSINEAQKAFEDTHEPNVVSYTTLIRGYLKKERFDDALALFRKMPE 205

Query: 148 RDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQV 207
           R+VVSWN MI GY++ G  EE +  + V+ R     NE +F   ++    +  L + R  
Sbjct: 206 RNVVSWNAMISGYSQMGYNEEAVNLFVVMLREGTLPNERTFPCAISAVANIAALGMGRSF 265

Query: 208 HGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDM 267
           HG  +      +V I +S+V  YAKCG + ++  +F+    +++++W  ++ GYA  G  
Sbjct: 266 HGSAVKFLGKFDVFIGNSLVSFYAKCGSMEESLLVFNTLPKKNIVSWNALICGYANHGRG 325

Query: 268 ESASKLFNEMPE----KNPVSWTTLIAGYTRNGLGQKALELFTRMMI 310
             A   F +M +     N V+   L+     +GL  K    F +  +
Sbjct: 326 MEAIYFFEKMQDTGLRPNSVTLLGLLLACNHSGLVDKGYSYFNKARV 372



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 81/342 (23%), Positives = 146/342 (42%), Gaps = 79/342 (23%)

Query: 200 ELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVS 259
           +LK ++++HG+ +  G     ++   IV +Y+    L DA +LFDE    DV++ T  + 
Sbjct: 28  QLKESQRIHGRAIKLG---TTILEPDIVCSYSASKALWDACKLFDEVPNWDVVSATATIG 84

Query: 260 GYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHT 319
            +A+    E                               +A+  F+RM+ L I+PNQ +
Sbjct: 85  CFARYHHHE-------------------------------EAIYFFSRMLALNIKPNQFS 113

Query: 320 FSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTD 379
           F + + +  ++  L  G+Q+H   I+    SN  V S+++D Y+K   +N+ ++ F+ T 
Sbjct: 114 FGTVIPSSTALQDLNSGRQLHACAIKMGLESNVFVGSAVVDFYAKLTSINEAQKAFEDTH 173

Query: 380 N------------------------------KENSMLWNTMISALTQHGYDEQAIRLFHD 409
                                          + N + WN MIS  +Q GY+E+A+ LF  
Sbjct: 174 EPNVVSYTTLIRGYLKKERFDDALALFRKMPERNVVSWNAMISGYSQMGYNEEAVNLFVV 233

Query: 410 MVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLG----IIPNQEHHACLIELL 465
           M+R    P++ T    ++A  +   +  G ++  S    LG     I N      L+   
Sbjct: 234 MLREGTLPNERTFPCAISAVANIAALGMGRSFHGSAVKFLGKFDVFIGNS-----LVSFY 288

Query: 466 AQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGR 507
           A+ G  ++ +     +P + +   WNAL  +C   G  + GR
Sbjct: 289 AKCGSMEESLLVFNTLP-KKNIVSWNAL--IC---GYANHGR 324


>gi|357507131|ref|XP_003623854.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355498869|gb|AES80072.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 865

 Score =  291 bits (744), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 168/583 (28%), Positives = 292/583 (50%), Gaps = 37/583 (6%)

Query: 26  SLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKT 85
           +L + G  +EAI     L +RGI+          + CA S      K VH          
Sbjct: 138 ALTTHGLSNEAIKIYSSLQERGIKPDMPVFLAAAKACAVSGDALRVKEVHDDAT------ 191

Query: 86  PTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNM 145
                         +CG             + ++F  N ++  Y     ++ AR +FD++
Sbjct: 192 --------------RCGV------------MSDVFVGNALIHAYGKCKCVEGARRVFDDL 225

Query: 146 AERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTR 205
             RDVVSW ++   Y K G   +G+  ++ +    +  N  + + IL  C +L++LK  +
Sbjct: 226 VVRDVVSWTSLSSCYVKCGFPRKGMDVFREMGWSGVKPNPMTVSSILPACAELKDLKSGK 285

Query: 206 QVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLG 265
           ++HG  +  G + N+ + S++V  YAKC  + +AR +FD    RDV++W  +++ Y K  
Sbjct: 286 EIHGFAVRHGMVVNLFVCSALVSLYAKCLSVREARMVFDLMPHRDVVSWNGVLTAYFKNK 345

Query: 266 DMESASKLFNEMPE----KNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFS 321
           + E    LF +M       +  +W  +I G   NG  ++A+E+F +M  +  +PN+ T S
Sbjct: 346 EYEKGFSLFLKMSRDGVRADEATWNAVIGGCMENGRSEEAVEMFRKMQKMGFKPNEITIS 405

Query: 322 SCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNK 381
           S L AC+   +L+ GK++H ++ R     +    ++L+ MY+KCG LN  R VFD+   K
Sbjct: 406 SILPACSFSENLRMGKEIHCYVFRHWKVGDLTSTTALLYMYAKCGDLNLSRNVFDMMRRK 465

Query: 382 ENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTY 441
           +  + WNTMI A   HG  ++A+ LF  M+ S V+P+ +T   +L+ C+HS LV+EG+  
Sbjct: 466 D-VVAWNTMIIANAMHGNGKEALFLFDKMLLSRVQPNSVTFTGVLSGCSHSRLVEEGVQI 524

Query: 442 FESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHG 501
           F SM  D  + P+  H++C++++ ++AG  ++    ++ MP E  +  W AL   CR++ 
Sbjct: 525 FNSMGRDHLVEPDANHYSCVVDIYSRAGRLNEAYKFIQGMPMEPTASAWGALLAACRVYK 584

Query: 502 NIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWI 561
           N+++ +    +L +  P +   +  L +I           +VR L+ ER   K    SW+
Sbjct: 585 NVELAKISAKKLFEIEPNNPGNYVSLFNILVTAKMWSEASQVRILMKERGITKTPGCSWL 644

Query: 562 EIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQMGEDAPSLDAD 604
           ++ NKVH F V D  +   D +Y+ L++L  +M       D D
Sbjct: 645 QVGNKVHTFVVGDKSNIESDKIYNFLDELVEKMKMAGYKPDTD 687



 Score =  163 bits (412), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 116/452 (25%), Positives = 191/452 (42%), Gaps = 69/452 (15%)

Query: 131 NLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAG 190
           N+G    AR LFDN+ + D  + +T+I      G   E +K Y  L+   I  +   F  
Sbjct: 110 NVGDFNRARQLFDNIPQPDPTTCSTLISALTTHGLSNEAIKIYSSLQERGIKPDMPVFLA 169

Query: 191 ILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARD 250
               C    +    ++VH      G +S+V + ++++ AY KC  +  ARR+FD+   RD
Sbjct: 170 AAKACAVSGDALRVKEVHDDATRCGVMSDVFVGNALIHAYGKCKCVEGARRVFDDLVVRD 229

Query: 251 VLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMI 310
           V++WT++ S Y K                                G  +K +++F  M  
Sbjct: 230 VVSWTSLSSCYVKC-------------------------------GFPRKGMDVFREMGW 258

Query: 311 LRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLND 370
             ++PN  T SS L ACA +  LK GK++HGF +R     N  V S+L+ +Y+KC  + +
Sbjct: 259 SGVKPNPMTVSSILPACAELKDLKSGKEIHGFAVRHGMVVNLFVCSALVSLYAKCLSVRE 318

Query: 371 GRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACT 430
            R VFDL  +++  + WN +++A  ++   E+   LF  M R  V+ D+ T   ++  C 
Sbjct: 319 ARMVFDLMPHRD-VVSWNGVLTAYFKNKEYEKGFSLFLKMSRDGVRADEATWNAVIGGCM 377

Query: 431 HSGLVQEGLTYFESMTHDLGIIPNQ--------------------EHHACLIE------- 463
            +G  +E +  F  M   +G  PN+                    E H  +         
Sbjct: 378 ENGRSEEAVEMFRKM-QKMGFKPNEITISSILPACSFSENLRMGKEIHCYVFRHWKVGDL 436

Query: 464 ------LLAQAGCSD-QLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQ 516
                 L   A C D  L   +  M    D   WN +     +HGN      + D+++  
Sbjct: 437 TSTTALLYMYAKCGDLNLSRNVFDMMRRKDVVAWNTMIIANAMHGNGKEALFLFDKMLLS 496

Query: 517 NPQSSATHGLLSSIYSALGKGRLVEKVRQLIN 548
             Q ++     + + S     RLVE+  Q+ N
Sbjct: 497 RVQPNSV--TFTGVLSGCSHSRLVEEGVQIFN 526


>gi|449497733|ref|XP_004160501.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g13650-like [Cucumis sativus]
          Length = 1037

 Score =  290 bits (743), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 172/576 (29%), Positives = 297/576 (51%), Gaps = 73/576 (12%)

Query: 27  LISKGQLSEAISSLDLLAQRGIR--LPAE-TLAFILQQCAESKSLKLGKRVHLHLKLTQR 83
           L++ GQL     S ++  Q  +   +P + T   IL+ C    +L LG+++H H+  T  
Sbjct: 435 LVAYGQLDNLSDSFEIFRQMQMEGMIPNQFTYPSILRTCTSLGALYLGEQIHTHVIKTGF 494

Query: 84  KTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFD 143
           +    ++ + LI MY K G    A ++  ++P                            
Sbjct: 495 QL-NVYVCSVLIDMYAKYGQLALALRILRRLP---------------------------- 525

Query: 144 NMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKL 203
              E DVVSW  MI GY +     E L+ ++ +    I  +   FA  ++ C  +  L+ 
Sbjct: 526 ---EDDVVSWTAMIAGYVQHDMFSEALQLFEEMEYRGIQFDNIGFASAISACAGIRALRQ 582

Query: 204 TRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAK 263
            +Q+H Q    GF +++ I+++++  YA+CG                             
Sbjct: 583 GQQIHAQSYAAGFGADLSINNALISLYARCGR---------------------------- 614

Query: 264 LGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSC 323
              ++ A   F ++ +KN +SW +L++G  ++G  ++AL++F RM+      N  T+ S 
Sbjct: 615 ---IQEAYLAFEKIGDKNNISWNSLVSGLAQSGYFEEALQVFVRMLRTEAEVNMFTYGSA 671

Query: 324 LCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDG-RQVFDLTDNKE 382
           + A AS+ ++K G+Q+H  +++T + S   V +SLI +Y+K G ++D  R+  D+++   
Sbjct: 672 ISAAASLANIKQGQQIHSMVLKTGYDSEREVSNSLISLYAKSGSISDAWREFNDMSE--R 729

Query: 383 NSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYF 442
           N + WN MI+  +QHG   +A+RLF +M    + P+ +T   +L+AC+H GLV+EGL YF
Sbjct: 730 NVISWNAMITGYSQHGCGMEALRLFEEMKVCGIMPNHVTFVGVLSACSHIGLVKEGLDYF 789

Query: 443 ESM--THDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIH 500
           ESM   HDL  +P  EH+ C+++LL +AG  D+ M  +++MP   D+ +W  L   C IH
Sbjct: 790 ESMFKIHDL--VPKSEHYVCVVDLLGRAGQLDRAMEYIKEMPIPADAMIWRTLLSACVIH 847

Query: 501 GNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISW 560
            NI++G +    L++  P+ SAT+ L+S+IY+   +    +  R+L+ +   KKE   SW
Sbjct: 848 KNIEIGERAAHHLLELEPEDSATYVLISNIYAVSRQWIHRDWSRKLMKDXGVKKEPGRSW 907

Query: 561 IEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQMGE 596
           IE++N VHAF   D LHP+ + +Y  +  L  +  E
Sbjct: 908 IEVKNAVHAFYAGDKLHPLTNQIYEYIGHLNRRTSE 943



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 120/483 (24%), Positives = 209/483 (43%), Gaps = 69/483 (14%)

Query: 11  NRKNLPNNCLIQSFLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKL 70
           +R  +  N LI     L+ +G    A+     + +  ++    T+A +L  CA   +L  
Sbjct: 324 SRDGVSYNSLISG---LVQQGFSDRALELFTKMQRDCLKPDCITVASLLSACASVGALHK 380

Query: 71  GKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYA 130
           G ++H H  +    +    L   L+ +Y KC     A K F     +N+  +N ML  Y 
Sbjct: 381 GMQLHSH-AIKAGMSADIILEGSLLDLYSKCADVETAHKFFLXTETENIVLWNVMLVAYG 439

Query: 131 NLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAG 190
            L  +  +  +F  M    ++                                N+F++  
Sbjct: 440 QLDNLSDSFEIFRQMQMEGMIP-------------------------------NQFTYPS 468

Query: 191 ILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARD 250
           IL  C  L  L L  Q+H  V+ TGF  NV + S ++D YAK G+L+ A R+       D
Sbjct: 469 ILRTCTSLGALYLGEQIHTHVIKTGFQLNVYVCSVLIDMYAKYGQLALALRILRRLPEDD 528

Query: 251 VLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMI 310
           V++WT M++GY +         +F+E                        AL+LF  M  
Sbjct: 529 VVSWTAMIAGYVQ-------HDMFSE------------------------ALQLFEEMEY 557

Query: 311 LRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLND 370
             I+ +   F+S + ACA I +L+ G+Q+H       F ++  + ++LI +Y++CG + +
Sbjct: 558 RGIQFDNIGFASAISACAGIRALRQGQQIHAQSYAAGFGADLSINNALISLYARCGRIQE 617

Query: 371 GRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACT 430
               F+   +K N++ WN+++S L Q GY E+A+++F  M+R+  + +  T    ++A  
Sbjct: 618 AYLAFEKIGDK-NNISWNSLVSGLAQSGYFEEALQVFVRMLRTEAEVNMFTYGSAISAAA 676

Query: 431 HSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLW 490
               +++G     SM    G    +E    LI L A++G       +   M  E +   W
Sbjct: 677 SLANIKQG-QQIHSMVLKTGYDSEREVSNSLISLYAKSGSISDAWREFNDMS-ERNVISW 734

Query: 491 NAL 493
           NA+
Sbjct: 735 NAM 737



 Score =  154 bits (388), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 109/410 (26%), Positives = 189/410 (46%), Gaps = 71/410 (17%)

Query: 34  SEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNH 93
           S+ I  ++ + +RG+R   +   ++L+ C  S SL    R+H  +  +        L + 
Sbjct: 40  SKRIQLMNFMEERGVRSNYQNYLWLLEGCLTSGSLFETMRLHCRISKSGFDGEP-LLIDS 98

Query: 94  LISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSW 153
           L+  YF+ G    A KVFD+                                + R V SW
Sbjct: 99  LVDNYFRHGDQHGAVKVFDE-------------------------------NSNRSVFSW 127

Query: 154 NTMIIGYAKSGAVEEGLKFYKVLRRF---SISCNEFSFAGILTICVKLE-ELKLTRQVHG 209
           N MI  +    A +   + + + RR     I+ N ++FAG+L  CV  +      +QVH 
Sbjct: 128 NKMIHVFV---AQKSNFQVFCLFRRMLAEGITPNGYTFAGVLKACVGGDIAFNYVKQVHS 184

Query: 210 QVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMES 269
           +    GF S+ ++++ ++D Y+K G +  A+++F+    +D++TW  M+S          
Sbjct: 185 RTFYYGFDSSPLVANLLIDLYSKNGYIESAKKVFNCICMKDIVTWVAMIS---------- 234

Query: 270 ASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACAS 329
                                G ++NGL ++A+ LF  M    I P  +  SS L A   
Sbjct: 235 ---------------------GLSQNGLEEEAILLFCDMHASEIFPTPYVLSSVLSASTK 273

Query: 330 IVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNT 389
           I   + G+Q+H  +I+  F S T V + L+ +YS+   L    ++F  T N  + + +N+
Sbjct: 274 IQLFELGEQLHCLVIKWGFHSETYVCNGLVALYSRSRKLISAERIFS-TMNSRDGVSYNS 332

Query: 390 MISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGL 439
           +IS L Q G+ ++A+ LF  M R  +KPD IT+A +L+AC   G + +G+
Sbjct: 333 LISGLVQQGFSDRALELFTKMQRDCLKPDCITVASLLSACASVGALHKGM 382



 Score =  138 bits (348), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 102/386 (26%), Positives = 181/386 (46%), Gaps = 44/386 (11%)

Query: 111 FDKIP-VKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEG 169
           FD  P V NL     ++  Y+  G ++ A+ +F+ +  +D+V+W  MI G +++G  EE 
Sbjct: 191 FDSSPLVANL-----LIDLYSKNGYIESAKKVFNCICMKDIVTWVAMISGLSQNGLEEEA 245

Query: 170 LKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDA 229
           +  +  +    I    +  + +L+   K++  +L  Q+H  V+  GF S   + + +V  
Sbjct: 246 ILLFCDMHASEIFPTPYVLSSVLSASTKIQLFELGEQLHCLVIKWGFHSETYVCNGLVAL 305

Query: 230 YAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLI 289
           Y++  +L  A R+F   ++RD +++ +++SG                             
Sbjct: 306 YSRSRKLISAERIFSTMNSRDGVSYNSLISG----------------------------- 336

Query: 290 AGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFR 349
               + G   +ALELFT+M    ++P+  T +S L ACAS+ +L  G Q+H   I+    
Sbjct: 337 --LVQQGFSDRALELFTKMQRDCLKPDCITVASLLSACASVGALHKGMQLHSHAIKAGMS 394

Query: 350 SNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHD 409
           ++ I+  SL+D+YSKC  +    + F  T+  EN +LWN M+ A  Q      +  +F  
Sbjct: 395 ADIILEGSLLDLYSKCADVETAHKFFLXTET-ENIVLWNVMLVAYGQLDNLSDSFEIFRQ 453

Query: 410 MVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDL--GIIPNQEHHACLIELLAQ 467
           M    + P++ T   IL  CT  G +  G    +  TH +  G   N    + LI++ A+
Sbjct: 454 MQMEGMIPNQFTYPSILRTCTSLGALYLGE---QIHTHVIKTGFQLNVYVCSVLIDMYAK 510

Query: 468 AGCSDQLMNQLEKMPYEHDSYLWNAL 493
            G     +  L ++P E D   W A+
Sbjct: 511 YGQLALALRILRRLP-EDDVVSWTAM 535



 Score =  138 bits (348), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 89/371 (23%), Positives = 175/371 (47%), Gaps = 34/371 (9%)

Query: 123 NNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSIS 182
           N +++ Y+    +  A  +F  M  RD VS+N++I G  + G  +  L+ +  ++R  + 
Sbjct: 300 NGLVALYSRSRKLISAERIFSTMNSRDGVSYNSLISGLVQQGFSDRALELFTKMQRDCLK 359

Query: 183 CNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRL 242
            +  + A +L+ C  +  L    Q+H   +  G  +++++  S++D Y+KC ++  A + 
Sbjct: 360 PDCITVASLLSACASVGALHKGMQLHSHAIKAGMSADIILEGSLLDLYSKCADVETAHKF 419

Query: 243 FDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKAL 302
           F  T+  +++ W  M+  Y +L ++                                 + 
Sbjct: 420 FLXTETENIVLWNVMLVAYGQLDNLSD-------------------------------SF 448

Query: 303 ELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMY 362
           E+F +M +  + PNQ T+ S L  C S+ +L  G+Q+H  +I+T F+ N  V S LIDMY
Sbjct: 449 EIFRQMQMEGMIPNQFTYPSILRTCTSLGALYLGEQIHTHVIKTGFQLNVYVCSVLIDMY 508

Query: 363 SKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITL 422
           +K G L    ++      +++ + W  MI+   QH    +A++LF +M    ++ D I  
Sbjct: 509 AKYGQLALALRILRRLP-EDDVVSWTAMIAGYVQHDMFSEALQLFEEMEYRGIQFDNIGF 567

Query: 423 AVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMP 482
           A  ++AC     +++G     + ++  G   +   +  LI L A+ G   +     EK+ 
Sbjct: 568 ASAISACAGIRALRQG-QQIHAQSYAAGFGADLSINNALISLYARCGRIQEAYLAFEKIG 626

Query: 483 YEHDSYLWNAL 493
            + ++  WN+L
Sbjct: 627 -DKNNISWNSL 636


>gi|255559863|ref|XP_002520950.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223539787|gb|EEF41367.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 835

 Score =  290 bits (743), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 181/647 (27%), Positives = 308/647 (47%), Gaps = 106/647 (16%)

Query: 21  IQSFLSLIS----KGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHL 76
           + S+ S+IS     G  +EA+     + + G+     T A  LQ C +S  +KLG ++H 
Sbjct: 125 VVSWNSIISAYSGNGMCTEALCLFSEMLKAGVVTNTYTFAAALQACEDSSFIKLGMQIHA 184

Query: 77  HLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMK 136
            + L   +    +++N L++MY +          F K+P                     
Sbjct: 185 AI-LKSGRVLDVYVANALVAMYVR----------FGKMP--------------------- 212

Query: 137 HARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICV 196
            A  +F N+  +D+V+WN+M+ G+ ++G   E L+F+  L+   +  ++ S   I+    
Sbjct: 213 EAAVIFGNLEGKDIVTWNSMLTGFIQNGLYSEALEFFYDLQNADLKPDQVSIISIIVASG 272

Query: 197 KLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTT 256
           +L  L   +++H   +  GF SN+++ ++++D YAKC  +S   R FD    +D+++WTT
Sbjct: 273 RLGYLLNGKEIHAYAIKNGFDSNILVGNTLIDMYAKCCCMSYGGRAFDLMAHKDLISWTT 332

Query: 257 MVSGYAK-------------------------LGDMESASKLFNEMPE------------ 279
             +GYA+                         +G +  A +  N + +            
Sbjct: 333 AAAGYAQNKCYLQALELLRQLQMEGMDVDATMIGSILLACRGLNCLGKIKEIHGYTIRGG 392

Query: 280 -KNPVSWTTLIAGYTRNGLGQKALELF-------------------------------TR 307
             +PV   T+I  Y   G+   A+ +F                               + 
Sbjct: 393 LSDPVLQNTIIDVYGECGIIDYAVRIFESIECKDVVSWTSMISCYVHNGLANKALEVFSS 452

Query: 308 MMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGC 367
           M    + P+  T  S L A  S+ +LK GK++HGF+IR  F     + ++L+DMY++CG 
Sbjct: 453 MKETGLEPDYVTLVSILSAVCSLSTLKKGKEIHGFIIRKGFILEGSISNTLVDMYARCGS 512

Query: 368 LNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILN 427
           + D  ++F  T N+ N +LW  MISA   HGY E A+ LF  M    + PD IT   +L 
Sbjct: 513 VEDAYKIFTCTKNR-NLILWTAMISAYGMHGYGEAAVELFMRMKDEKIIPDHITFLALLY 571

Query: 428 ACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDS 487
           AC+HSGLV EG ++ E M  +  + P  EH+ CL++LL +  C ++    ++ M  E   
Sbjct: 572 ACSHSGLVNEGKSFLEIMKCEYQLEPWPEHYTCLVDLLGRRNCLEEAYQIVKSMQNEPTP 631

Query: 488 YLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLI 547
            +W AL G CRIH N ++G    ++L++ +  +   + L+S++++A G+ + VE+VR  +
Sbjct: 632 EVWCALLGACRIHSNKEIGEVAAEKLLELDLDNPGNYVLVSNVFAANGRWKDVEEVRMRM 691

Query: 548 NERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQM 594
                 K    SWIE+ NK+HAF   D LHP  D +Y  L Q+  ++
Sbjct: 692 KGSGLTKNPGCSWIEVGNKIHAFLSRDKLHPECDKIYQKLAQVTEKL 738



 Score =  155 bits (392), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 102/403 (25%), Positives = 184/403 (45%), Gaps = 65/403 (16%)

Query: 28  ISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPT 87
           +S G+   A+     +   G+   + T   +L+ C   + L  G  +H  L +       
Sbjct: 34  VSNGEALGALEMYREMRHLGVSFDSYTFPVLLKACGIVEDLFCGAEIH-GLAIKYGCDSF 92

Query: 88  TFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAE 147
            F+ N L+++Y KC +D++                               AR LFD M  
Sbjct: 93  VFVVNSLVALYAKC-NDING------------------------------ARKLFDRMYV 121

Query: 148 R-DVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQ 206
           R DVVSWN++I  Y+ +G   E L  +  + +  +  N ++FA  L  C     +KL  Q
Sbjct: 122 RNDVVSWNSIISAYSGNGMCTEALCLFSEMLKAGVVTNTYTFAAALQACEDSSFIKLGMQ 181

Query: 207 VHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGD 266
           +H  +L +G + +V +++++V  Y + G++ +A  +F   + +D++TW +M++       
Sbjct: 182 IHAAILKSGRVLDVYVANALVAMYVRFGKMPEAAVIFGNLEGKDIVTWNSMLT------- 234

Query: 267 MESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCA 326
                                   G+ +NGL  +ALE F  +    ++P+Q +  S + A
Sbjct: 235 ------------------------GFIQNGLYSEALEFFYDLQNADLKPDQVSIISIIVA 270

Query: 327 CASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSML 386
              +  L +GK++H + I+  F SN +V ++LIDMY+KC C++ G + FDL  +K+  + 
Sbjct: 271 SGRLGYLLNGKEIHAYAIKNGFDSNILVGNTLIDMYAKCCCMSYGGRAFDLMAHKD-LIS 329

Query: 387 WNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNAC 429
           W T  +   Q+    QA+ L   +    +  D   +  IL AC
Sbjct: 330 WTTAAAGYAQNKCYLQALELLRQLQMEGMDVDATMIGSILLAC 372



 Score =  142 bits (357), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 87/343 (25%), Positives = 165/343 (48%), Gaps = 64/343 (18%)

Query: 97  MYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTM 156
           MY KCGS +DA  +FDK+  +++F++N M+ GY +                         
Sbjct: 1   MYGKCGSVLDAEMIFDKMSERSIFTWNAMMGGYVS------------------------- 35

Query: 157 IIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGF 216
                 +G     L+ Y+ +R   +S + ++F  +L  C  +E+L    ++HG  +  G 
Sbjct: 36  ------NGEALGALEMYREMRHLGVSFDSYTFPVLLKACGIVEDLFCGAEIHGLAIKYGC 89

Query: 217 LSNVVISSSIVDAYAKCGELSDARRLFDETDAR-DVLTWTTMVSGYAKLGDMESASKLFN 275
            S V + +S+V  YAKC +++ AR+LFD    R DV++W +++S Y+             
Sbjct: 90  DSFVFVVNSLVALYAKCNDINGARKLFDRMYVRNDVVSWNSIISAYSG------------ 137

Query: 276 EMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKH 335
                              NG+  +AL LF+ M+   +  N +TF++ L AC     +K 
Sbjct: 138 -------------------NGMCTEALCLFSEMLKAGVVTNTYTFAAALQACEDSSFIKL 178

Query: 336 GKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALT 395
           G Q+H  ++++    +  V ++L+ MY + G + +   +F   + K+  + WN+M++   
Sbjct: 179 GMQIHAAILKSGRVLDVYVANALVAMYVRFGKMPEAAVIFGNLEGKD-IVTWNSMLTGFI 237

Query: 396 QHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEG 438
           Q+G   +A+  F+D+  + +KPD++++  I+ A    G +  G
Sbjct: 238 QNGLYSEALEFFYDLQNADLKPDQVSIISIIVASGRLGYLLNG 280



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 56/179 (31%), Positives = 99/179 (55%)

Query: 261 YAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTF 320
           Y K G +  A  +F++M E++  +W  ++ GY  NG    ALE++  M  L +  + +TF
Sbjct: 2   YGKCGSVLDAEMIFDKMSERSIFTWNAMMGGYVSNGEALGALEMYREMRHLGVSFDSYTF 61

Query: 321 SSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDN 380
              L AC  +  L  G ++HG  I+    S   V++SL+ +Y+KC  +N  R++FD    
Sbjct: 62  PVLLKACGIVEDLFCGAEIHGLAIKYGCDSFVFVVNSLVALYAKCNDINGARKLFDRMYV 121

Query: 381 KENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGL 439
           + + + WN++ISA + +G   +A+ LF +M+++ V  +  T A  L AC  S  ++ G+
Sbjct: 122 RNDVVSWNSIISAYSGNGMCTEALCLFSEMLKAGVVTNTYTFAAALQACEDSSFIKLGM 180


>gi|110741623|dbj|BAE98759.1| hypothetical protein [Arabidopsis thaliana]
          Length = 504

 Score =  290 bits (743), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 155/469 (33%), Positives = 254/469 (54%), Gaps = 2/469 (0%)

Query: 137 HARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICV 196
           +AR LFD+        +N +I  Y       E +  Y +L    +  +  +F  I     
Sbjct: 27  YARKLFDHHQNSCTFLYNKLIQAYYVHHQPHESIVLYNLLSFDGLRPSHHTFNFIFAASA 86

Query: 197 KLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTT 256
                +  R +H Q   +GF S+    ++++ AYAK G L  ARR+FDE   RDV  W  
Sbjct: 87  SFSSARPLRLLHSQFFRSGFESDSFCCTTLITAYAKLGALCCARRVFDEMSKRDVPVWNA 146

Query: 257 MVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILR-IRP 315
           M++GY + GDM++A +LF+ MP KN  SWTT+I+G+++NG   +AL++F  M   + ++P
Sbjct: 147 MITGYQRRGDMKAAMELFDSMPRKNVTSWTTVISGFSQNGNYSEALKMFLCMEKDKSVKP 206

Query: 316 NQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVF 375
           N  T  S L ACA++  L+ G+++ G+     F  N  V ++ I+MYSKCG ++  +++F
Sbjct: 207 NHITVVSVLPACANLGELEIGRRLEGYARENGFFDNIYVCNATIEMYSKCGMIDVAKRLF 266

Query: 376 DLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLV 435
           +   N+ N   WN+MI +L  HG  ++A+ LF  M+R   KPD +T   +L AC H G+V
Sbjct: 267 EELGNQRNLCSWNSMIGSLATHGKHDEALTLFAQMLREGEKPDAVTFVGLLLACVHGGMV 326

Query: 436 QEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHG 495
            +G   F+SM     I P  EH+ C+I+LL + G   +  + ++ MP + D+ +W  L G
Sbjct: 327 VKGQELFKSMEEVHKISPKLEHYGCMIDLLGRVGKLQEAYDLIKTMPMKPDAVVWGTLLG 386

Query: 496 VCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKE 555
            C  HGN+++     + L    P +     ++S+IY+A  K   V ++R+L+ +    K 
Sbjct: 387 ACSFHGNVEIAEIASEALFKLEPTNPGNCVIMSNIYAANEKWDGVLRMRKLMKKETMTKA 446

Query: 556 QAISW-IEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQMGEDAPSLDA 603
              S+ +E+   VH F+V D  HP    +Y VLE++  +M  +    D+
Sbjct: 447 AGYSYFVEVGVDVHKFTVEDKSHPRSYEIYQVLEEIFRRMKLEKSRFDS 495



 Score =  142 bits (357), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 104/393 (26%), Positives = 185/393 (47%), Gaps = 46/393 (11%)

Query: 18  NCLIQSFLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLH 77
           N LIQ++       Q  E+I   +LL+  G+R    T  FI    A   S +  + +H  
Sbjct: 44  NKLIQAYYV---HHQPHESIVLYNLLSFDGLRPSHHTFNFIFAASASFSSARPLRLLHSQ 100

Query: 78  LKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKH 137
              +  ++  +F    LI+ Y K G+   AR+VFD++  +++  +N M++GY   G MK 
Sbjct: 101 FFRSGFES-DSFCCTTLITAYAKLGALCCARRVFDEMSKRDVPVWNAMITGYQRRGDMKA 159

Query: 138 ARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRR-FSISCNEFSFAGILTICV 196
           A  LFD+M  ++V SW T+I G++++G   E LK +  + +  S+  N  +   +L  C 
Sbjct: 160 AMELFDSMPRKNVTSWTTVISGFSQNGNYSEALKMFLCMEKDKSVKPNHITVVSVLPACA 219

Query: 197 KLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDET-DARDVLTWT 255
            L EL++ R++ G     GF  N+ + ++ ++ Y+KCG +  A+RLF+E  + R++ +W 
Sbjct: 220 NLGELEIGRRLEGYARENGFFDNIYVCNATIEMYSKCGMIDVAKRLFEELGNQRNLCSWN 279

Query: 256 TMVSGYAKLGDMESASKLFNEM----PEKNPVSWTTLIAGYTRNGLGQKALELFTRM-MI 310
           +M+   A  G  + A  LF +M     + + V++  L+      G+  K  ELF  M  +
Sbjct: 280 SMIGSLATHGKHDEALTLFAQMLREGEKPDAVTFVGLLLACVHGGMVVKGQELFKSMEEV 339

Query: 311 LRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLND 370
            +I P                 L+H                      +ID+  + G L +
Sbjct: 340 HKISPK----------------LEH-------------------YGCMIDLLGRVGKLQE 364

Query: 371 GRQVFDLTDNKENSMLWNTMISALTQHGYDEQA 403
              +      K ++++W T++ A + HG  E A
Sbjct: 365 AYDLIKTMPMKPDAVVWGTLLGACSFHGNVEIA 397


>gi|21952815|dbj|BAC06231.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|125572862|gb|EAZ14377.1| hypothetical protein OsJ_04297 [Oryza sativa Japonica Group]
 gi|215697551|dbj|BAG91545.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 548

 Score =  290 bits (743), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 178/537 (33%), Positives = 275/537 (51%), Gaps = 46/537 (8%)

Query: 36  AISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLI 95
           AI    LL  R   LP   +  +L+  A      LG+ +H    +         +   L+
Sbjct: 41  AIIYSKLLPHRTHHLP--LVIVLLKATASRADPVLGRALHAE-AVKSANAHDRLVGTTLV 97

Query: 96  SMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNT 155
           S+Y KCG   DAR+VFD +  +N  + N ML+GYA  G M  A  LF  M  R  V+W T
Sbjct: 98  SVYCKCGLLADARRVFDGMLDRNAVTCNAMLAGYAAAGDMVSAEALFAGMGSRTPVTWAT 157

Query: 156 MIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTG 215
           +I G+A  G + E  +++                         E + L  Q         
Sbjct: 158 LIRGFAGKGDMAETRRWF-------------------------EAMPLGMQ--------- 183

Query: 216 FLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFN 275
              NVV  +  V AY   G++  AR LF++  AR+   W++MV+G  K G+ + A  +F+
Sbjct: 184 ---NVVTWTVAVQAYVAAGDMETARELFNKMPARNAFVWSSMVTGNFKAGNADEAQAVFD 240

Query: 276 EMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKH 335
           ++P +N V+W  LIAGY + G  +KALE F  M+  +I+P++ T +  L ACA + SL+ 
Sbjct: 241 KIPVRNLVNWNALIAGYAKMGCCEKALEAFHSMLKDKIKPDEFTMAGVLSACAQLGSLEQ 300

Query: 336 GKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALT 395
            ++VH F+I+   R N  VM+ L+DM++KCG L   R +FD    + N+  WN+MISAL+
Sbjct: 301 ARKVHNFIIQHRIRKNQFVMNGLVDMFAKCGDLAFARNIFDNMQWR-NTECWNSMISALS 359

Query: 396 QHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQ 455
            HG   +AIRLF  M  S  KP++ITL  +L ACTH G V EGL  F S     G+    
Sbjct: 360 SHGQSIEAIRLFSKMECSEQKPNEITLLAVLGACTHGGFVDEGLRIF-SKFDIYGVAAAV 418

Query: 456 EHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLID 515
           EH+ CL++LL ++G   +    ++ M  E +  +W +L G CR+HG+ +M   V  ++  
Sbjct: 419 EHYGCLVDLLGRSGRLREAYEIVKNMLVEPNEVIWGSLLGACRVHGDAEMSELVSSEIHQ 478

Query: 516 QNPQSSATHG----LLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVH 568
            + +  +T+     LLS+I ++  +    E++R+ +      K    S +E+E   H
Sbjct: 479 LHSRRVSTNDAEYILLSNIMASSERWEQAERMRRKMALHGVGKTPGCSSVELEITEH 535



 Score = 61.2 bits (147), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 53/225 (23%), Positives = 104/225 (46%), Gaps = 12/225 (5%)

Query: 10  INRKNLPN-NCLIQSFLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSL 68
           I  +NL N N LI  +  +   G   +A+ +   + +  I+    T+A +L  CA+  SL
Sbjct: 242 IPVRNLVNWNALIAGYAKM---GCCEKALEAFHSMLKDKIKPDEFTMAGVLSACAQLGSL 298

Query: 69  KLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSG 128
           +  ++VH +  +  R     F+ N L+ M+ KCG    AR +FD +  +N   +N+M+S 
Sbjct: 299 EQARKVH-NFIIQHRIRKNQFVMNGLVDMFAKCGDLAFARNIFDNMQWRNTECWNSMISA 357

Query: 129 YANLGMMKHARNLFDNMA----ERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCN 184
            ++ G    A  LF  M     + + ++   ++      G V+EGL+ +     + ++  
Sbjct: 358 LSSHGQSIEAIRLFSKMECSEQKPNEITLLAVLGACTHGGFVDEGLRIFSKFDIYGVAAA 417

Query: 185 EFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDA 229
              +  ++ +  +   L+   ++   +LV     N VI  S++ A
Sbjct: 418 VEHYGCLVDLLGRSGRLREAYEIVKNMLVE---PNEVIWGSLLGA 459


>gi|357136755|ref|XP_003569969.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g20770-like [Brachypodium distachyon]
          Length = 805

 Score =  290 bits (743), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 169/608 (27%), Positives = 304/608 (50%), Gaps = 81/608 (13%)

Query: 16  PNNCLIQSFLS-LISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAES--------K 66
           PN     + +  L+  G + +A+     + + G+R+    ++ +L  CA++        +
Sbjct: 204 PNEVSFTAMMGGLVQAGSVDDALRLFARMCRSGVRVDPVAVSSVLGSCAQACASEFDVVR 263

Query: 67  SLKLGKRVHLHLKLTQRKT--PTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNN 124
           + +LG+ +H    L  RK       + N LI MY KC    +A KVFD +P  +  S+N 
Sbjct: 264 AFRLGQCIH---ALIVRKGFGSDQHVGNSLIDMYTKCMQMDEAVKVFDSLPNISTVSWNI 320

Query: 125 MLSGYANLG----------MMKH-------------------------ARNLFDNMAERD 149
           +++G+   G          +M+                          AR +FD ++   
Sbjct: 321 LITGFGQAGSYAKALEVLNLMEESGSEPNEVTYSNMLASCIKARDVLSARAMFDKISRPS 380

Query: 150 VVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHG 209
           V +WNT++ GY +    ++ ++ ++ ++  ++  +  + A IL+ C +L  L L  QVH 
Sbjct: 381 VTTWNTLLSGYCQEELHQDTVELFRRMQHQNVQPDRTTLAVILSSCSRLGILDLGTQVHS 440

Query: 210 QVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMES 269
             +     +++ ++S +VD Y+KCG++                       G A++     
Sbjct: 441 ASVRFLLHNDMFVASGLVDMYSKCGQI-----------------------GIARI----- 472

Query: 270 ASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACAS 329
              +FN M E++ V W ++I+G   + L ++A + F +M    + P + +++S + +CA 
Sbjct: 473 ---IFNRMTERDVVCWNSMISGLAIHSLNEEAFDFFKQMRGNGMMPTESSYASMINSCAR 529

Query: 330 IVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNT 389
           + S+  G+Q+H  +++  +  N  V S+LIDMY+KCG ++D R  FD    K N + WN 
Sbjct: 530 LSSVPQGRQIHAQIVKDGYDQNVYVGSALIDMYAKCGNMDDARVFFDCMVTK-NIVAWNE 588

Query: 390 MISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDL 449
           MI    Q+G+ E+A+ LF  M+ +  +PD +T   +L  C+HSGLV E + +F SM    
Sbjct: 589 MIHGYAQNGFGEKAVDLFEYMLTTEQRPDGVTFIAVLTGCSHSGLVDEAIAFFNSMESTY 648

Query: 450 GIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKV 509
           GI P  EH+ CLI+ L +AG   ++   ++ MP + D  +W  L   C +H N ++G   
Sbjct: 649 GITPLAEHYTCLIDGLGRAGRLVEVEALIDNMPCKDDPIVWEVLLAACAVHHNAELGECA 708

Query: 510 VDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHA 569
              L   +P++ + + LLS+IY++LG+      VR L++ R   K +  SWI+ ++ VHA
Sbjct: 709 AKHLFRLDPKNPSPYVLLSNIYASLGRHGDASGVRALMSSRGVVKGRGYSWIDHKDGVHA 768

Query: 570 FSVSDSLH 577
           F V+D L 
Sbjct: 769 FMVADDLQ 776



 Score =  178 bits (451), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 117/404 (28%), Positives = 194/404 (48%), Gaps = 38/404 (9%)

Query: 51  PAETLAFILQQCAE--SKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDAR 108
           PA  LA +LQ C +   K  +   R      L       TFL N L+ +Y   G   DA 
Sbjct: 4   PAAQLAGVLQACIKRSPKPSRAHARAAHARVLAAGLGADTFLINRLVELYSVSGLPCDAL 63

Query: 109 KVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEE 168
           + F  +P  N +SYN  LS     G +  AR L D M +R+VVSWNT+I   A+S    E
Sbjct: 64  RAFRSLPRPNAYSYNAALSAARRAGDLDAARALLDEMPDRNVVSWNTVIAALARSERAGE 123

Query: 169 GLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVD 228
            L+ Y+ + R  +    F+ A +L+ C  +  L   R+ HG  +  G   N+ + ++++ 
Sbjct: 124 ALELYEGMLREGLVPTHFTLASVLSACGAVAALDDGRRCHGLAVKVGLDENLFVENALLG 183

Query: 229 AYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTL 288
            Y KCG + DA RLFD   + + +++T M+ G  + G ++ A +LF  M           
Sbjct: 184 MYTKCGGVEDAVRLFDGMASPNEVSFTAMMGGLVQAGSVDDALRLFARM----------- 232

Query: 289 IAGYTRNGLGQKALELFTRMMILRIRP--NQHTFSSCLCACAS----IVSLKHGKQVHGF 342
                R+G              +R+ P        SC  ACAS    + + + G+ +H  
Sbjct: 233 ----CRSG--------------VRVDPVAVSSVLGSCAQACASEFDVVRAFRLGQCIHAL 274

Query: 343 LIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQ 402
           ++R  F S+  V +SLIDMY+KC  +++  +VFD   N  +++ WN +I+   Q G   +
Sbjct: 275 IVRKGFGSDQHVGNSLIDMYTKCMQMDEAVKVFDSLPNI-STVSWNILITGFGQAGSYAK 333

Query: 403 AIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMT 446
           A+ + + M  S  +P+++T + +L +C  +  V      F+ ++
Sbjct: 334 ALEVLNLMEESGSEPNEVTYSNMLASCIKARDVLSARAMFDKIS 377



 Score =  171 bits (432), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 130/515 (25%), Positives = 224/515 (43%), Gaps = 71/515 (13%)

Query: 35  EAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHL 94
           EA+   + + + G+     TLA +L  C    +L  G+R H  L +        F+ N L
Sbjct: 123 EALELYEGMLREGLVPTHFTLASVLSACGAVAALDDGRRCH-GLAVKVGLDENLFVENAL 181

Query: 95  ISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWN 154
           + MY KCG   DA ++FD +   N  S+  M+ G    G +  A  LF  M         
Sbjct: 182 LGMYTKCGGVEDAVRLFDGMASPNEVSFTAMMGGLVQAGSVDDALRLFARM--------- 232

Query: 155 TMIIGYAKSGAVEEGLKFYKVLRRFSISC-NEFSFAGILTICVKLEELKLTRQVHGQVLV 213
                  +SG   + +    VL   + +C +EF           +   +L + +H  ++ 
Sbjct: 233 ------CRSGVRVDPVAVSSVLGSCAQACASEFDV---------VRAFRLGQCIHALIVR 277

Query: 214 TGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLG-------- 265
            GF S+  + +S++D Y KC ++ +A ++FD       ++W  +++G+ + G        
Sbjct: 278 KGFGSDQHVGNSLIDMYTKCMQMDEAVKVFDSLPNISTVSWNILITGFGQAGSYAKALEV 337

Query: 266 ---------------------------DMESASKLFNEMPEKNPVSWTTLIAGYTRNGLG 298
                                      D+ SA  +F+++   +  +W TL++GY +  L 
Sbjct: 338 LNLMEESGSEPNEVTYSNMLASCIKARDVLSARAMFDKISRPSVTTWNTLLSGYCQEELH 397

Query: 299 QKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSL 358
           Q  +ELF RM    ++P++ T +  L +C+ +  L  G QVH   +R    ++  V S L
Sbjct: 398 QDTVELFRRMQHQNVQPDRTTLAVILSSCSRLGILDLGTQVHSASVRFLLHNDMFVASGL 457

Query: 359 IDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPD 418
           +DMYSKCG +   R +F+    ++  + WN+MIS L  H  +E+A   F  M  + + P 
Sbjct: 458 VDMYSKCGQIGIARIIFNRMTERD-VVCWNSMISGLAIHSLNEEAFDFFKQMRGNGMMPT 516

Query: 419 KITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQL 478
           + + A ++N+C     V +G      +  D G   N    + LI++ A+ G  D      
Sbjct: 517 ESSYASMINSCARLSSVPQGRQIHAQIVKD-GYDQNVYVGSALIDMYAKCGNMDDARVFF 575

Query: 479 EKMPYEHDSYLWNALHGVCRIHGNID--MGRKVVD 511
           + M    +   WN +     IHG      G K VD
Sbjct: 576 DCM-VTKNIVAWNEM-----IHGYAQNGFGEKAVD 604


>gi|15241651|ref|NP_196468.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171895|sp|Q9FNN7.1|PP371_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g08510
 gi|9759345|dbj|BAB10000.1| unnamed protein product [Arabidopsis thaliana]
 gi|50897238|gb|AAT85758.1| At5g08510 [Arabidopsis thaliana]
 gi|332003930|gb|AED91313.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 511

 Score =  290 bits (743), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 155/469 (33%), Positives = 254/469 (54%), Gaps = 2/469 (0%)

Query: 137 HARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICV 196
           +AR LFD+        +N +I  Y       E +  Y +L    +  +  +F  I     
Sbjct: 34  YARKLFDHHQNSCTFLYNKLIQAYYVHHQPHESIVLYNLLSFDGLRPSHHTFNFIFAASA 93

Query: 197 KLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTT 256
                +  R +H Q   +GF S+    ++++ AYAK G L  ARR+FDE   RDV  W  
Sbjct: 94  SFSSARPLRLLHSQFFRSGFESDSFCCTTLITAYAKLGALCCARRVFDEMSKRDVPVWNA 153

Query: 257 MVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILR-IRP 315
           M++GY + GDM++A +LF+ MP KN  SWTT+I+G+++NG   +AL++F  M   + ++P
Sbjct: 154 MITGYQRRGDMKAAMELFDSMPRKNVTSWTTVISGFSQNGNYSEALKMFLCMEKDKSVKP 213

Query: 316 NQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVF 375
           N  T  S L ACA++  L+ G+++ G+     F  N  V ++ I+MYSKCG ++  +++F
Sbjct: 214 NHITVVSVLPACANLGELEIGRRLEGYARENGFFDNIYVCNATIEMYSKCGMIDVAKRLF 273

Query: 376 DLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLV 435
           +   N+ N   WN+MI +L  HG  ++A+ LF  M+R   KPD +T   +L AC H G+V
Sbjct: 274 EELGNQRNLCSWNSMIGSLATHGKHDEALTLFAQMLREGEKPDAVTFVGLLLACVHGGMV 333

Query: 436 QEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHG 495
            +G   F+SM     I P  EH+ C+I+LL + G   +  + ++ MP + D+ +W  L G
Sbjct: 334 VKGQELFKSMEEVHKISPKLEHYGCMIDLLGRVGKLQEAYDLIKTMPMKPDAVVWGTLLG 393

Query: 496 VCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKE 555
            C  HGN+++     + L    P +     ++S+IY+A  K   V ++R+L+ +    K 
Sbjct: 394 ACSFHGNVEIAEIASEALFKLEPTNPGNCVIMSNIYAANEKWDGVLRMRKLMKKETMTKA 453

Query: 556 QAISW-IEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQMGEDAPSLDA 603
              S+ +E+   VH F+V D  HP    +Y VLE++  +M  +    D+
Sbjct: 454 AGYSYFVEVGVDVHKFTVEDKSHPRSYEIYQVLEEIFRRMKLEKSRFDS 502



 Score =  142 bits (357), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 104/393 (26%), Positives = 185/393 (47%), Gaps = 46/393 (11%)

Query: 18  NCLIQSFLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLH 77
           N LIQ++       Q  E+I   +LL+  G+R    T  FI    A   S +  + +H  
Sbjct: 51  NKLIQAYYV---HHQPHESIVLYNLLSFDGLRPSHHTFNFIFAASASFSSARPLRLLHSQ 107

Query: 78  LKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKH 137
              +  ++  +F    LI+ Y K G+   AR+VFD++  +++  +N M++GY   G MK 
Sbjct: 108 FFRSGFES-DSFCCTTLITAYAKLGALCCARRVFDEMSKRDVPVWNAMITGYQRRGDMKA 166

Query: 138 ARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRR-FSISCNEFSFAGILTICV 196
           A  LFD+M  ++V SW T+I G++++G   E LK +  + +  S+  N  +   +L  C 
Sbjct: 167 AMELFDSMPRKNVTSWTTVISGFSQNGNYSEALKMFLCMEKDKSVKPNHITVVSVLPACA 226

Query: 197 KLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDET-DARDVLTWT 255
            L EL++ R++ G     GF  N+ + ++ ++ Y+KCG +  A+RLF+E  + R++ +W 
Sbjct: 227 NLGELEIGRRLEGYARENGFFDNIYVCNATIEMYSKCGMIDVAKRLFEELGNQRNLCSWN 286

Query: 256 TMVSGYAKLGDMESASKLFNEM----PEKNPVSWTTLIAGYTRNGLGQKALELFTRM-MI 310
           +M+   A  G  + A  LF +M     + + V++  L+      G+  K  ELF  M  +
Sbjct: 287 SMIGSLATHGKHDEALTLFAQMLREGEKPDAVTFVGLLLACVHGGMVVKGQELFKSMEEV 346

Query: 311 LRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLND 370
            +I P                 L+H                      +ID+  + G L +
Sbjct: 347 HKISPK----------------LEH-------------------YGCMIDLLGRVGKLQE 371

Query: 371 GRQVFDLTDNKENSMLWNTMISALTQHGYDEQA 403
              +      K ++++W T++ A + HG  E A
Sbjct: 372 AYDLIKTMPMKPDAVVWGTLLGACSFHGNVEIA 404


>gi|108712115|gb|ABF99910.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|215767226|dbj|BAG99454.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 684

 Score =  290 bits (743), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 162/509 (31%), Positives = 281/509 (55%), Gaps = 2/509 (0%)

Query: 54  TLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDK 113
            LA I+  CA+      G++ H  + +++ +     LS  L++MY KCG    AR V + 
Sbjct: 177 VLATIVGACADWMKYDFGRQAHARMVVSKIEQDLV-LSCALVNMYCKCGDLDSARYVLNG 235

Query: 114 IPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFY 173
           +   + FS + ++ GYA+ G +  A  LFD   E  +  WN++I G A +    +    +
Sbjct: 236 LTQVDEFSLSALIYGYASCGHLHEAIRLFDRKEEPSIAMWNSLISGCAFACCGNDAFALF 295

Query: 174 KVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKC 233
             + R  +  +  ++A IL +C     +   +Q+HG  L  G +++++++S+++D Y+KC
Sbjct: 296 ARMMRSDVLPDSSTYASILNVCGFSVMVNPGQQIHGCGLKCGAVNDIIVASALIDFYSKC 355

Query: 234 GELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYT 293
           G   DA R F E    D +   +M++ Y+  G +E A ++F+ +  K+ +SW +++ G +
Sbjct: 356 GLWEDACRAFRELRFHDTIVLNSMITVYSNCGQIEEARRIFDMITGKSVISWNSMVVGLS 415

Query: 294 RNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTI 353
           +NG  + AL LF  M  L +R ++   +S L A +SI S+  G+Q+         +S+ +
Sbjct: 416 QNGHARDALGLFCEMHRLGLRLDKVAIASALSASSSICSISFGEQIFSLATVLGLQSDHV 475

Query: 354 VMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRS 413
           V SSLID+Y KCG L +G ++F+  D K + +LWN+M+     +GY  +A+ L   M   
Sbjct: 476 VASSLIDLYCKCGSLANGCRIFEEID-KPDEVLWNSMLIGHASNGYGHEALELLELMKTK 534

Query: 414 SVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQ 473
            +KP + T   +L+AC HSGLV+EGLT+F  M  D  + P+ EH+AC+ +LL +AG  ++
Sbjct: 535 GIKPSERTFIAVLSACCHSGLVKEGLTWFHRMQADFSVSPSAEHYACVTDLLVRAGRLEE 594

Query: 474 LMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSA 533
            +  +E MP+E D+  W  + G C+  GN  M RKV  +L++      + +  LSS  ++
Sbjct: 595 SVEFIENMPFEADAVSWTTVIGGCKAQGNEAMMRKVAKKLMEMESSHPSLYVQLSSGLAS 654

Query: 534 LGKGRLVEKVRQLINERQFKKEQAISWIE 562
           LG      ++R ++ ER+  K    SWI+
Sbjct: 655 LGDWTKSAEIRSMMYERRITKNPGYSWID 683



 Score =  186 bits (471), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 140/504 (27%), Positives = 233/504 (46%), Gaps = 75/504 (14%)

Query: 61  QCAESKSLKLGKRVHLHLKLTQRKTPTTFL-SNHLISMYFKCGS--DVDARKVFDKIPVK 117
           Q   S S   G+++H  L L     P++   SN L+ MY +C      DAR++FD++PVK
Sbjct: 12  QLLRSCSAVAGQQLH-QLLLKSGHVPSSLPPSNSLLLMYARCSPLHQHDARRLFDEMPVK 70

Query: 118 NLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSG------------A 165
           N FSYN++++ + N      A N+F +M ER+  SWNT+I G   +G             
Sbjct: 71  NCFSYNSVITSHLNSRDHHAALNIFRSMPERNTFSWNTIITGIVSTGNLDMARSLLIEMP 130

Query: 166 VEEGLKFYKVLRRF-------------------------SISCNEFSFAGILTICVKLEE 200
           V++ +    VL R+                         S   + F  A I+  C    +
Sbjct: 131 VKDPVACNAVLHRYVRRGRADEAFALLRTVGQCSGADASSPWNDPFVLATIVGACADWMK 190

Query: 201 LKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSG 260
               RQ H +++V+    ++V+S ++V+ Y KCG+L  AR + +     D  + + ++ G
Sbjct: 191 YDFGRQAHARMVVSKIEQDLVLSCALVNMYCKCGDLDSARYVLNGLTQVDEFSLSALIYG 250

Query: 261 YAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTF 320
           YA  G +  A +LF+   E +   W +LI+G      G  A  LF RMM   + P+  T+
Sbjct: 251 YASCGHLHEAIRLFDRKEEPSIAMWNSLISGCAFACCGNDAFALFARMMRSDVLPDSSTY 310

Query: 321 SSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLND---------- 370
           +S L  C   V +  G+Q+HG  ++    ++ IV S+LID YSKCG   D          
Sbjct: 311 ASILNVCGFSVMVNPGQQIHGCGLKCGAVNDIIVASALIDFYSKCGLWEDACRAFRELRF 370

Query: 371 ---------------------GRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHD 409
                                 R++FD+   K + + WN+M+  L+Q+G+   A+ LF +
Sbjct: 371 HDTIVLNSMITVYSNCGQIEEARRIFDMITGK-SVISWNSMVVGLSQNGHARDALGLFCE 429

Query: 410 MVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAG 469
           M R  ++ DK+ +A  L+A +    +  G   F S+   LG+  +    + LI+L  + G
Sbjct: 430 MHRLGLRLDKVAIASALSASSSICSISFGEQIF-SLATVLGLQSDHVVASSLIDLYCKCG 488

Query: 470 CSDQLMNQLEKMPYEHDSYLWNAL 493
                    E++  + D  LWN++
Sbjct: 489 SLANGCRIFEEID-KPDEVLWNSM 511



 Score =  105 bits (261), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 92/383 (24%), Positives = 158/383 (41%), Gaps = 72/383 (18%)

Query: 205 RQVHGQVLVTGFL-SNVVISSSIVDAYAKCGELS--DARRLFDETDA------------- 248
           +Q+H  +L +G + S++  S+S++  YA+C  L   DARRLFDE                
Sbjct: 23  QQLHQLLLKSGHVPSSLPPSNSLLLMYARCSPLHQHDARRLFDEMPVKNCFSYNSVITSH 82

Query: 249 ------------------RDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIA 290
                             R+  +W T+++G    G+++ A  L  EMP K+PV+   ++ 
Sbjct: 83  LNSRDHHAALNIFRSMPERNTFSWNTIITGIVSTGNLDMARSLLIEMPVKDPVACNAVLH 142

Query: 291 GYTRNGLGQKALELFTRMMILR----IRPNQHTF--SSCLCACASIVSLKHGKQVHGFLI 344
            Y R G   +A  L   +          P    F  ++ + ACA  +    G+Q H  ++
Sbjct: 143 RYVRRGRADEAFALLRTVGQCSGADASSPWNDPFVLATIVGACADWMKYDFGRQAHARMV 202

Query: 345 RTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFD---------------------------- 376
            +    + ++  +L++MY KCG L+  R V +                            
Sbjct: 203 VSKIEQDLVLSCALVNMYCKCGDLDSARYVLNGLTQVDEFSLSALIYGYASCGHLHEAIR 262

Query: 377 LTDNKENS--MLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGL 434
           L D KE     +WN++IS          A  LF  M+RS V PD  T A ILN C  S +
Sbjct: 263 LFDRKEEPSIAMWNSLISGCAFACCGNDAFALFARMMRSDVLPDSSTYASILNVCGFSVM 322

Query: 435 VQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALH 494
           V  G           G + +    + LI+  ++ G  +       ++ + HD+ + N++ 
Sbjct: 323 VNPG-QQIHGCGLKCGAVNDIIVASALIDFYSKCGLWEDACRAFRELRF-HDTIVLNSMI 380

Query: 495 GVCRIHGNIDMGRKVVDQLIDQN 517
            V    G I+  R++ D +  ++
Sbjct: 381 TVYSNCGQIEEARRIFDMITGKS 403


>gi|357512007|ref|XP_003626292.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355501307|gb|AES82510.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 650

 Score =  290 bits (743), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 183/621 (29%), Positives = 301/621 (48%), Gaps = 102/621 (16%)

Query: 55  LAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKI 114
           L  +L  C   ++L LG  +H  +     K P +F                     FD  
Sbjct: 37  LTSLLTLCGRDRNLTLGSSIHARII----KQPPSF--------------------DFDGS 72

Query: 115 PVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYK 174
               LF +N++LS Y+  G  ++A N+FD M  RD VSWNTMI G+ ++G  +   KF+K
Sbjct: 73  QRNALFIWNSLLSMYSKCGEFRNAGNVFDYMPVRDTVSWNTMISGFLRNGDFDTSFKFFK 132

Query: 175 VLRRFSISCNEFSFAGILTICVKLEELKL------TRQVHGQVLVTGFLS---------- 218
            +   +  C  F  A + T+    + L+L      T+ +HG V V GF            
Sbjct: 133 QMTESNRVCCRFDKATLTTMLSGCDGLRLGISTSVTQMIHGLVFVGGFEREITVGNALIT 192

Query: 219 ---------------------NVVISSSIVDAYAKCGELSDARRLFDE-----TDARDVL 252
                                NVV  ++++   A+     D+ RLF +     + + +VL
Sbjct: 193 SYFKCECFSQGRKVFDEMIERNVVTWTAVISGLAQNEFYEDSLRLFAQMRCCGSVSPNVL 252

Query: 253 TW-----------------------------------TTMVSGYAKLGDMESASKLFNEM 277
           T+                                   + ++  Y+K G +++A ++F   
Sbjct: 253 TYLSSLMACSGLQVLRDGQKIHGLLWKLGMQSDLCIESALMDLYSKCGSLDAAWQIFESA 312

Query: 278 PEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGK 337
            E + VS T ++  + +NG  ++A+++FT+M+ L +  + +  S+ L        L  GK
Sbjct: 313 EELDGVSLTVILVAFAQNGFEEEAIQIFTKMVALGMEVDANMVSAVLGVFGVGTYLALGK 372

Query: 338 QVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQH 397
           Q+H  +I+ NF  N  V + L++MYSKCG L+D   VF     K NS+ WN++I+A  +H
Sbjct: 373 QIHSLIIKKNFCENPFVGNGLVNMYSKCGDLSDSLLVFYQMTQK-NSVSWNSVIAAFARH 431

Query: 398 GYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEH 457
           G   +A++ + +M    V P  +T   +L+AC+H+GLV++G+   ESMT+D GI P  EH
Sbjct: 432 GDGFKALQFYEEMRVEGVAPTDVTFLSLLHACSHAGLVEKGMELLESMTNDHGISPRSEH 491

Query: 458 HACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQN 517
           +AC++++L +AG  ++    +E +P      +W AL G C IHG+ +MG+   D+L    
Sbjct: 492 YACVVDMLGRAGHLNEAKKFIEGLPEHGGVLVWQALLGACSIHGDSEMGKYAADRLFSAA 551

Query: 518 PQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLH 577
           P S A + L+++IYS+ G  +      + + E    KE  ISWIEIE KV++F V D LH
Sbjct: 552 PASPAPYVLMANIYSSEGNWKERASSIKRMKEMGVAKEVGISWIEIEKKVNSFVVGDKLH 611

Query: 578 PMRDVLYSVLEQLAGQMGEDA 598
           P  DV++ VL  L   + ++ 
Sbjct: 612 PEADVIFWVLSGLLKHLKDEG 632



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 79/301 (26%), Positives = 137/301 (45%), Gaps = 42/301 (13%)

Query: 184 NEFSFAGILTICVKLEELKLTRQVHGQVL-------VTGFLSNVV-ISSSIVDAYAKCGE 235
           N      +LT+C +   L L   +H +++         G   N + I +S++  Y+KCGE
Sbjct: 33  NHADLTSLLTLCGRDRNLTLGSSIHARIIKQPPSFDFDGSQRNALFIWNSLLSMYSKCGE 92

Query: 236 LSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRN 295
             +A  +FD    RD ++W TM+SG+ + GD +++ K F +M E N V            
Sbjct: 93  FRNAGNVFDYMPVRDTVSWNTMISGFLRNGDFDTSFKFFKQMTESNRVC----------- 141

Query: 296 GLGQKALELFTRMMILRIRPNQHTFSSCLCACASI---VSLKHGKQVHGFLIRTNFRSNT 352
                             R ++ T ++ L  C  +   +S    + +HG +    F    
Sbjct: 142 -----------------CRFDKATLTTMLSGCDGLRLGISTSVTQMIHGLVFVGGFEREI 184

Query: 353 IVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDM-V 411
            V ++LI  Y KC C + GR+VFD    + N + W  +IS L Q+ + E ++RLF  M  
Sbjct: 185 TVGNALITSYFKCECFSQGRKVFDEMIER-NVVTWTAVISGLAQNEFYEDSLRLFAQMRC 243

Query: 412 RSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCS 471
             SV P+ +T    L AC+   ++++G      +   LG+  +    + L++L ++ G  
Sbjct: 244 CGSVSPNVLTYLSSLMACSGLQVLRDG-QKIHGLLWKLGMQSDLCIESALMDLYSKCGSL 302

Query: 472 D 472
           D
Sbjct: 303 D 303



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 61/283 (21%), Positives = 118/283 (41%), Gaps = 49/283 (17%)

Query: 25  LSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRK 84
           ++    G   EAI     +   G+ + A  ++ +L        L LGK++H  L + +  
Sbjct: 325 VAFAQNGFEEEAIQIFTKMVALGMEVDANMVSAVLGVFGVGTYLALGKQIH-SLIIKKNF 383

Query: 85  TPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDN 144
               F+ N L++MY KCG   D+  VF +                               
Sbjct: 384 CENPFVGNGLVNMYSKCGDLSDSLLVFYQ------------------------------- 412

Query: 145 MAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLT 204
           M +++ VSWN++I  +A+ G   + L+FY+ +R   ++  + +F  +L  C     ++  
Sbjct: 413 MTQKNSVSWNSVIAAFARHGDGFKALQFYEEMRVEGVAPTDVTFLSLLHACSHAGLVE-- 470

Query: 205 RQVHGQVLVTGFLSNVVIS------SSIVDAYAKCGELSDARRLFDE-TDARDVLTWTTM 257
               G  L+    ++  IS      + +VD   + G L++A++  +   +   VL W  +
Sbjct: 471 ---KGMELLESMTNDHGISPRSEHYACVVDMLGRAGHLNEAKKFIEGLPEHGGVLVWQAL 527

Query: 258 VSGYAKLGDME----SASKLFNEMPEKNPVSWTTLIAGYTRNG 296
           +   +  GD E    +A +LF+  P  +P  +  +   Y+  G
Sbjct: 528 LGACSIHGDSEMGKYAADRLFSAAP-ASPAPYVLMANIYSSEG 569


>gi|357436397|ref|XP_003588474.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355477522|gb|AES58725.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 668

 Score =  290 bits (743), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 172/561 (30%), Positives = 286/561 (50%), Gaps = 69/561 (12%)

Query: 40  LDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYF 99
           LDL+    +         +L++C     LK GK VH HL +  +      + N ++ MY 
Sbjct: 79  LDLINNGSLEPDRTIYNKLLKRCTMLGKLKQGKLVHTHL-MNSKFRNDLVIKNSILFMYA 137

Query: 100 KCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIG 159
           KCGS                               ++ AR +FD M  +DVV+W +MI G
Sbjct: 138 KCGS-------------------------------LEIARQVFDEMCVKDVVTWTSMITG 166

Query: 160 YAKSG---AVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGF 216
           Y++ G   +    L  +  + R  +  NEF+ + ++  C  L      +Q+HG     GF
Sbjct: 167 YSQDGYASSATTALVLFLEMVRDGLRPNEFALSSLVKCCGFLGSCVDGKQIHGCCWKYGF 226

Query: 217 LSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNE 276
             NV + SS+VD YA+C                               G++  +  +F+E
Sbjct: 227 QENVFVGSSLVDMYARC-------------------------------GELRESRLVFDE 255

Query: 277 MPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHG 336
           +  KN VSW  LI+G+ R G G++AL LF +M        + T+S+ LC+ ++  SL+ G
Sbjct: 256 LESKNEVSWNALISGFARKGEGEEALGLFVKMQREGFGATEFTYSALLCSSSTTGSLEQG 315

Query: 337 KQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQ 396
           K +H  ++++  +    V ++L+ MY+K G + D ++VFD    K + +  N+M+    Q
Sbjct: 316 KWLHAHMMKSGKKLVGYVGNTLLHMYAKSGNICDAKKVFDRL-VKVDVVSCNSMLIGYAQ 374

Query: 397 HGYDEQAIRLFHDM-VRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQ 455
           HG  ++A+ LF +M +   ++P+ IT   +L AC+H+GL+ EGL YFE M    G+ P  
Sbjct: 375 HGLGKEAVELFEEMMLWVEIEPNDITFLSVLTACSHAGLLDEGLYYFELMK-KYGLEPKL 433

Query: 456 EHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLID 515
            H+  +++L  +AG  DQ  + +E+MP E ++ +W AL G  ++H N +MG     ++++
Sbjct: 434 SHYTTVVDLFGRAGLLDQAKSFIEEMPIEPNATIWGALLGASKMHKNTEMGAYAAQKVLE 493

Query: 516 QNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDS 575
            +P     H LLS+IY++ G+ + V KVR+ + +   KKE A SW+EIEN VH FS +D 
Sbjct: 494 LDPFYPGAHTLLSNIYASAGQWKDVAKVRKEMKDSGLKKEPACSWVEIENSVHIFSANDI 553

Query: 576 LHPMRDVLYSVLEQLAGQMGE 596
            HP ++ +Y + E L  ++ E
Sbjct: 554 SHPQKNKVYEMWENLNQKIKE 574



 Score =  146 bits (369), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 87/270 (32%), Positives = 141/270 (52%), Gaps = 29/270 (10%)

Query: 169 GLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVD 228
           GL    ++   S+  +   +  +L  C  L +LK  + VH  ++ + F +++VI +SI+ 
Sbjct: 75  GLHVLDLINNGSLEPDRTIYNKLLKRCTMLGKLKQGKLVHTHLMNSKFRNDLVIKNSILF 134

Query: 229 AYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTL 288
            YAKCG L  AR++FDE   +DV+TWT+M++GY++ G   SA+                 
Sbjct: 135 MYAKCGSLEIARQVFDEMCVKDVVTWTSMITGYSQDGYASSAT----------------- 177

Query: 289 IAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNF 348
                       AL LF  M+   +RPN+   SS +  C  + S   GKQ+HG   +  F
Sbjct: 178 -----------TALVLFLEMVRDGLRPNEFALSSLVKCCGFLGSCVDGKQIHGCCWKYGF 226

Query: 349 RSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFH 408
           + N  V SSL+DMY++CG L + R VFD  ++K N + WN +IS   + G  E+A+ LF 
Sbjct: 227 QENVFVGSSLVDMYARCGELRESRLVFDELESK-NEVSWNALISGFARKGEGEEALGLFV 285

Query: 409 DMVRSSVKPDKITLAVILNACTHSGLVQEG 438
            M R      + T + +L + + +G +++G
Sbjct: 286 KMQREGFGATEFTYSALLCSSSTTGSLEQG 315



 Score = 76.6 bits (187), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 48/169 (28%), Positives = 93/169 (55%), Gaps = 9/169 (5%)

Query: 18  NCLIQSFLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLH 77
           N LI  F     KG+  EA+     + + G      T + +L   + + SL+ GK +H H
Sbjct: 265 NALISGF---ARKGEGEEALGLFVKMQREGFGATEFTYSALLCSSSTTGSLEQGKWLHAH 321

Query: 78  LKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKH 137
           +  + +K    ++ N L+ MY K G+  DA+KVFD++   ++ S N+ML GYA  G+ K 
Sbjct: 322 MMKSGKKL-VGYVGNTLLHMYAKSGNICDAKKVFDRLVKVDVVSCNSMLIGYAQHGLGKE 380

Query: 138 ARNLFDNMA-----ERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSI 181
           A  LF+ M      E + +++ +++   + +G ++EGL ++++++++ +
Sbjct: 381 AVELFEEMMLWVEIEPNDITFLSVLTACSHAGLLDEGLYYFELMKKYGL 429


>gi|414878289|tpg|DAA55420.1| TPA: hypothetical protein ZEAMMB73_457942 [Zea mays]
          Length = 534

 Score =  290 bits (743), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 166/498 (33%), Positives = 266/498 (53%), Gaps = 41/498 (8%)

Query: 137 HARNLFDN---MAERDVVSWNTMIIGYAK----SGAVEEG-LKFYKVLRRFSIS-CNEFS 187
           HAR +FDN    A  +V  W   I  YA+    S +V EG L  ++++ R  +   N F+
Sbjct: 37  HARAVFDNAVPTACENVYLWTATIAAYARHASSSPSVAEGALTLFRLMLRHGVPRPNAFT 96

Query: 188 FAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETD 247
            + ++  C  L  +++  QVHG ++  G      + +++VD Y   G ++DARR+FDE  
Sbjct: 97  ASSVVRCCSALRAVRVGIQVHGFLVNAGLGRAEHVRAALVDMYGNHGRVADARRVFDEMS 156

Query: 248 ARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELF-- 305
           A  V+   TMV+ Y + GD+ES   +F+ M E++ +SW TL+ GY R G    A ELF  
Sbjct: 157 ATSVVLGNTMVACYVRAGDVESGRVVFDRMVERDLISWNTLMMGYLRQGGAGVARELFEE 216

Query: 306 -----------------------------TRMMILRIRPNQHTFSSCLCACASIVSLKHG 336
                                         RM + R +P+  T +  + ACA + SL   
Sbjct: 217 MPDRNVNSWNMAIAAYSQERSWADAVAVFNRMRLARFQPDPATMAVLMSACAQLGSLSVA 276

Query: 337 KQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQ 396
           +QVHG L +     N  V++SLIDMY+KCG ++    +F  T  K+ ++ +N MI AL +
Sbjct: 277 RQVHGILRKGCVEMNFHVLNSLIDMYAKCGSISQAHLLFVETHLKD-TVSYNVMICALAR 335

Query: 397 HGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQE 456
           HG+   A+++F +M +  ++PD +TL  +L+AC H+GLV +G  YFESM  +  I  + +
Sbjct: 336 HGHGRDALQVFDEMSKERLQPDAVTLLGVLSACAHAGLVHDGKFYFESMKTNYAIEQSPD 395

Query: 457 HHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQ 516
           H+AC+++L  +AG   +       MP E  + +W AL   CR H N+++G+    +LI  
Sbjct: 396 HYACMVDLYGRAGLIKEAYELARAMPMEPHAGVWGALINACRKHCNVEVGKVAARELIAI 455

Query: 517 NPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSL 576
            P++  T+ LL++  +   +   VE V Q +  +  +K    SW+E+EN VH F + +S 
Sbjct: 456 EPRNPGTYVLLANTLARGQQWEFVETVWQSMRGKGIEKTAGCSWLEVENVVHEFLMGESS 515

Query: 577 HPMRDVLYSVLEQLAGQM 594
           HP  D +YS+LE L  Q+
Sbjct: 516 HPNSDEIYSILEHLYLQL 533



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 92/397 (23%), Positives = 180/397 (45%), Gaps = 69/397 (17%)

Query: 36  AISSLDLLAQRGIRLP-AETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHL 94
           A++   L+ + G+  P A T + +++ C+  +++++G +VH  L +         +   L
Sbjct: 77  ALTLFRLMLRHGVPRPNAFTASSVVRCCSALRAVRVGIQVHGFL-VNAGLGRAEHVRAAL 135

Query: 95  ISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWN 154
           + MY   G   DAR+VFD++   ++   N M++ Y   G ++  R +FD M ERD++SWN
Sbjct: 136 VDMYGNHGRVADARRVFDEMSATSVVLGNTMVACYVRAGDVESGRVVFDRMVERDLISWN 195

Query: 155 TMIIGYAKSGAV-------------------------------EEGLKFYKVLRRFSISC 183
           T+++GY + G                                  + +  +  +R      
Sbjct: 196 TLMMGYLRQGGAGVARELFEEMPDRNVNSWNMAIAAYSQERSWADAVAVFNRMRLARFQP 255

Query: 184 NEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLS-NVVISSSIVDAYAKCGELSDARRL 242
           +  + A +++ C +L  L + RQVHG +L  G +  N  + +S++D YAKCG +S A  L
Sbjct: 256 DPATMAVLMSACAQLGSLSVARQVHG-ILRKGCVEMNFHVLNSLIDMYAKCGSISQAHLL 314

Query: 243 FDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKAL 302
           F ET  +D +++  M+   A+                               +G G+ AL
Sbjct: 315 FVETHLKDTVSYNVMICALAR-------------------------------HGHGRDAL 343

Query: 303 ELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNF--RSNTIVMSSLID 360
           ++F  M   R++P+  T    L ACA    L H  + +   ++TN+    +    + ++D
Sbjct: 344 QVFDEMSKERLQPDAVTLLGVLSACAH-AGLVHDGKFYFESMKTNYAIEQSPDHYACMVD 402

Query: 361 MYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQH 397
           +Y + G + +  ++      + ++ +W  +I+A  +H
Sbjct: 403 LYGRAGLIKEAYELARAMPMEPHAGVWGALINACRKH 439


>gi|359489786|ref|XP_002271725.2| PREDICTED: pentatricopeptide repeat-containing protein
           At5g16860-like [Vitis vinifera]
          Length = 852

 Score =  290 bits (743), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 171/564 (30%), Positives = 285/564 (50%), Gaps = 57/564 (10%)

Query: 47  GIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVD 106
           GIR  A +L  +L  CA   +   GK+VH +  L        F+ N ++ MY KC     
Sbjct: 226 GIRPDAVSLVNVLPACASVGAWSRGKQVHGY-ALRSGLFEDVFVGNAVVDMYAKC----- 279

Query: 107 ARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAV 166
                                     GMM+ A  +F+ M  +DVVSWN M+ GY++ G  
Sbjct: 280 --------------------------GMMEEANKVFERMKVKDVVSWNAMVTGYSQIGRF 313

Query: 167 EEGLKFYKVLRRFSISCNEFSF----AGILTICVKLEELKLTRQVHGQVLVTGFLSNVVI 222
           ++ L  ++ +R   I  N  ++    AG     +  E L + RQ+     + G   NVV 
Sbjct: 314 DDALGLFEKIREEKIELNVVTWSAVIAGYAQRGLGFEALDVFRQMR----LCGSEPNVVT 369

Query: 223 SSSIVDAYAKCGELSDARRL----------FDETD-ARDVLTWTTMVSGYAKLGDMESAS 271
             S++   A  G L   +             DE D   D++    ++  Y+K    ++A 
Sbjct: 370 LVSLLSGCALAGTLLHGKETHCHAIKWILNLDENDPGDDLMVINALIDMYSKCKSPKAAR 429

Query: 272 KLFNEMPEKNP--VSWTTLIAGYTRNGLGQKALELFTRMMILR--IRPNQHTFSSCLCAC 327
            +F+ +P K+   V+WT LI G  ++G   +ALELF++M+     + PN  T S  L AC
Sbjct: 430 AMFDLIPPKDRSVVTWTVLIGGNAQHGEANEALELFSQMLQPDNFVMPNAFTISCALMAC 489

Query: 328 ASIVSLKHGKQVHGFLIRTNFRSNTI-VMSSLIDMYSKCGCLNDGRQVFDLTDNKENSML 386
           A + +L+ G+Q+H +++R  F S  + V + LIDMYSK G ++  R VFD   ++ N + 
Sbjct: 490 ARLGALRFGRQIHAYVLRNRFESAMLFVANCLIDMYSKSGDVDAARVVFD-NMHQRNGVS 548

Query: 387 WNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMT 446
           W ++++    HG  E+A+++F++M +  + PD +T  V+L AC+HSG+V +G+ YF  M 
Sbjct: 549 WTSLMTGYGMHGRGEEALQIFYEMQKVGLVPDGVTFVVVLYACSHSGMVDQGINYFNGMN 608

Query: 447 HDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMG 506
            D G++P  EH+AC+++LL++AG  D+ M  +  MP +    +W AL   CR++ N+++G
Sbjct: 609 KDFGVVPGAEHYACMVDLLSRAGRLDEAMELIRGMPMKPTPAVWVALLSACRVYANVELG 668

Query: 507 RKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENK 566
               +QL++    +  ++ LLS+IY+     + V ++R L+     KK    SW++    
Sbjct: 669 EYAANQLLELESGNDGSYTLLSNIYANARCWKDVARIRYLMKNTGIKKRPGCSWVQGRKG 728

Query: 567 VHAFSVSDSLHPMRDVLYSVLEQL 590
              F   D  HPM   +Y +L  L
Sbjct: 729 TATFFAGDWSHPMSQQIYDLLRDL 752



 Score =  214 bits (546), Expect = 9e-53,   Method: Compositional matrix adjust.
 Identities = 135/427 (31%), Positives = 221/427 (51%), Gaps = 32/427 (7%)

Query: 99  FKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAER---DVVSWNT 155
           F+CG+ V A  VF      N+F  N ++S Y   G  ++AR +FD M ER   D+VSWN+
Sbjct: 142 FRCGASVHA-VVFASGFEWNVFVGNGLVSMYGRCGAWENARQVFDEMRERGVGDLVSWNS 200

Query: 156 MIIGYAKSGAVEEGLK-FYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVT 214
           ++  Y + G     +K F ++     I  +  S   +L  C  +      +QVHG  L +
Sbjct: 201 IVAAYMQGGDSIRAMKMFERMTEDLGIRPDAVSLVNVLPACASVGAWSRGKQVHGYALRS 260

Query: 215 GFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLF 274
           G   +V + +++VD YAKCG + +A ++F+    +DV++W  MV+GY+++G  + A  LF
Sbjct: 261 GLFEDVFVGNAVVDMYAKCGMMEEANKVFERMKVKDVVSWNAMVTGYSQIGRFDDALGLF 320

Query: 275 NEMPEK----NPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASI 330
            ++ E+    N V+W+ +IAGY + GLG +AL++F +M +    PN  T  S L  CA  
Sbjct: 321 EKIREEKIELNVVTWSAVIAGYAQRGLGFEALDVFRQMRLCGSEPNVVTLVSLLSGCALA 380

Query: 331 VSLKHGKQVHGFLIR--TNFRSNT-----IVMSSLIDMYSKCGCLNDGRQVFDLTDNKEN 383
            +L HGK+ H   I+   N   N      +V+++LIDMYSKC      R +FDL   K+ 
Sbjct: 381 GTLLHGKETHCHAIKWILNLDENDPGDDLMVINALIDMYSKCKSPKAARAMFDLIPPKDR 440

Query: 384 SML-WNTMISALTQHGYDEQAIRLFHDMVRSS--VKPDKITLAVILNACTHSGLVQEGLT 440
           S++ W  +I    QHG   +A+ LF  M++    V P+  T++  L AC   G ++    
Sbjct: 441 SVVTWTVLIGGNAQHGEANEALELFSQMLQPDNFVMPNAFTISCALMACARLGALR---- 496

Query: 441 YFESMTHDLGIIPNQEHHA------CLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALH 494
            F    H   ++ N+   A      CLI++ +++G  D      + M ++ +   W +L 
Sbjct: 497 -FGRQIHAY-VLRNRFESAMLFVANCLIDMYSKSGDVDAARVVFDNM-HQRNGVSWTSLM 553

Query: 495 GVCRIHG 501
               +HG
Sbjct: 554 TGYGMHG 560



 Score =  147 bits (371), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 100/421 (23%), Positives = 189/421 (44%), Gaps = 52/421 (12%)

Query: 76  LHLKLTQRKTPTTFLSNHLIS-----------MYFKCGSDVDARKVFDKIPVKNL-FSYN 123
           + L   + K P  FL+    S           ++ +C S   A  +  ++ V+ L     
Sbjct: 3   ISLPRLKPKPPLLFLTTFFFSTASSTTDLTSTLFHQCKSLASAELIHQQLLVQGLPHDPT 62

Query: 124 NMLSGYANLGMMKHARNLFDNM--AERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSI 181
           +++S Y        A ++   +  +   V  WN +I      G +E+ L+ Y+ ++R   
Sbjct: 63  HIISMYLTFNSPAKALSVLRRLHPSSHTVFWWNQLIRRSVHLGFLEDVLQLYRRMQRLGW 122

Query: 182 SCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARR 241
             + ++F  +L  C ++   +    VH  V  +GF  NV + + +V  Y +CG   +AR+
Sbjct: 123 RPDHYTFPFVLKACGEIPSFRCGASVHAVVFASGFEWNVFVGNGLVSMYGRCGAWENARQ 182

Query: 242 LFDETDAR---DVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLG 298
           +FDE   R   D+++W ++V+ Y + GD   A K+F  M E                   
Sbjct: 183 VFDEMRERGVGDLVSWNSIVAAYMQGGDSIRAMKMFERMTED------------------ 224

Query: 299 QKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSL 358
                       L IRP+  +  + L ACAS+ +   GKQVHG+ +R+    +  V +++
Sbjct: 225 ------------LGIRPDAVSLVNVLPACASVGAWSRGKQVHGYALRSGLFEDVFVGNAV 272

Query: 359 IDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPD 418
           +DMY+KCG + +  +VF+    K+  + WN M++  +Q G  + A+ LF  +    ++ +
Sbjct: 273 VDMYAKCGMMEEANKVFERMKVKD-VVSWNAMVTGYSQIGRFDDALGLFEKIREEKIELN 331

Query: 419 KITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQL 478
            +T + ++      GL  E L  F  M     +  ++ +   L+ LL+    +  L++  
Sbjct: 332 VVTWSAVIAGYAQRGLGFEALDVFRQMR----LCGSEPNVVTLVSLLSGCALAGTLLHGK 387

Query: 479 E 479
           E
Sbjct: 388 E 388



 Score = 99.4 bits (246), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 60/212 (28%), Positives = 98/212 (46%), Gaps = 5/212 (2%)

Query: 285 WTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLI 344
           W  LI      G  +  L+L+ RM  L  RP+ +TF   L AC  I S + G  VH  + 
Sbjct: 94  WNQLIRRSVHLGFLEDVLQLYRRMQRLGWRPDHYTFPFVLKACGEIPSFRCGASVHAVVF 153

Query: 345 RTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSML--WNTMISALTQHGYDEQ 402
            + F  N  V + L+ MY +CG   + RQVFD    +    L  WN++++A  Q G   +
Sbjct: 154 ASGFEWNVFVGNGLVSMYGRCGAWENARQVFDEMRERGVGDLVSWNSIVAAYMQGGDSIR 213

Query: 403 AIRLFHDMVRS-SVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACL 461
           A+++F  M     ++PD ++L  +L AC   G    G           G+  +      +
Sbjct: 214 AMKMFERMTEDLGIRPDAVSLVNVLPACASVGAWSRG-KQVHGYALRSGLFEDVFVGNAV 272

Query: 462 IELLAQAGCSDQLMNQLEKMPYEHDSYLWNAL 493
           +++ A+ G  ++     E+M  + D   WNA+
Sbjct: 273 VDMYAKCGMMEEANKVFERMKVK-DVVSWNAM 303


>gi|147860004|emb|CAN81045.1| hypothetical protein VITISV_006763 [Vitis vinifera]
          Length = 1321

 Score =  290 bits (743), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 171/578 (29%), Positives = 289/578 (50%), Gaps = 68/578 (11%)

Query: 18  NCLIQSFLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLH 77
           NCLI ++      G   +A      +   G R    T + +L  C    +++ GK++H H
Sbjct: 183 NCLISAY---ARNGFFVQAFQVFMQIGNMGTRPNHYTYSTMLAVCGTISAIQEGKQLHAH 239

Query: 78  LKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKH 137
           +   Q  + T  + N L+++Y KCG                               MM+ 
Sbjct: 240 VVKMQYLSETA-VGNALLTLYSKCG-------------------------------MMEE 267

Query: 138 ARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVK 197
           A  +F+++ +R+++SW   I G+ + G  ++ LK + ++R   I  NEF+F+ +L  C  
Sbjct: 268 AEIVFESLRQRNIISWTASINGFYQHGDFKKALKQFSMMRESGIEPNEFTFSIVLASCGC 327

Query: 198 LEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTM 257
           +++    R  H QV+  G  S V + ++I+D Y+                          
Sbjct: 328 VKDFIDGRMFHTQVIKKGMASGVFVGTAIIDMYSG------------------------- 362

Query: 258 VSGYAKLGDMESASKLFNEMPEK-NPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPN 316
                 LG+M+ A K F +M    + VSW  LIAGY  N   +KA+E F RM+   +  N
Sbjct: 363 ------LGEMDEAEKQFKQMGRAASNVSWNALIAGYVLNEKIEKAMEAFCRMVKEDVACN 416

Query: 317 QHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFD 376
           + T+S+   AC+S  SL    Q+H  LI++N  SN  V SSLI+ Y++CG L +  QVF 
Sbjct: 417 EFTYSNIFKACSSFPSLATTVQIHSRLIKSNVESNLHVASSLIEAYTQCGSLENAVQVFT 476

Query: 377 LTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQ 436
              + +  + WN++I A +Q+G   +AI L   M+    KP   T   +L+AC+HSGLVQ
Sbjct: 477 QISDAD-VVSWNSIIKAYSQNGDPWKAIFLLRKMIEEGNKPTSXTFLTVLSACSHSGLVQ 535

Query: 437 EGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGV 496
           EG  +F+SM  D  I P + H +C++++L +AG  +  ++ ++K+  +  + +W  L   
Sbjct: 536 EGQEFFKSMVQDYSIQPEETHCSCMVDILGRAGQLENALDFIKKLTMKPTASIWRPLLAA 595

Query: 497 CRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQ 556
           CR + N+ M   V ++++D  P  +  +  LS++Y+ +G+    E  R+L+ +++  KE 
Sbjct: 596 CRYNSNLQMAEYVAEKILDLEPNDATVYVTLSNMYAEVGRWADAENQRRLMEQKEISKEP 655

Query: 557 AISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQM 594
             SWIE+ NK++ F   D  HP    +Y  L+QL  Q+
Sbjct: 656 GCSWIEVNNKMYKFFSHDKAHPEMPKVYEKLKQLVRQI 693



 Score =  273 bits (698), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 143/477 (29%), Positives = 251/477 (52%), Gaps = 40/477 (8%)

Query: 125  MLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCN 184
            ++S Y   G + +AR LFD +   ++  W  +    A+ G  EE L  +  +++  +  N
Sbjct: 844  LMSFYTECGQLSNARKLFDKIPNTNIRRWIVLTGACARRGFYEEALSAFSEMQKEGLRPN 903

Query: 185  EFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFD 244
            +F    IL  C  L + +    +H  +L   F S+  I S+++  Y+KCG +  A R+FD
Sbjct: 904  QFVLPSILKACGHLSDRRTGENMHTVILKNSFESDAYIISALIYMYSKCGHVEKACRVFD 963

Query: 245  ETDARD-----------------------------------VLTWTTMVSGYAKLGDMES 269
                +D                                   V++W T+++G++++GD   
Sbjct: 964  WIVDKDLVVMNAMVSGYAQHGFVHEALBLVQKMQQAGVKPNVVSWNTLIAGFSQVGDKSM 1023

Query: 270  ASKLFNEMP----EKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLC 325
             S++F  M     E + VSWT++I+G+ +N    +  + F  M+     P+  T SS L 
Sbjct: 1024 VSEVFRLMTANGVEPDVVSWTSVISGFVQNFHNHEGFDAFKEMLDQGFCPSSVTISSLLP 1083

Query: 326  ACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSM 385
            AC ++ +L+HGK++HG+ +      +  V S+L+DMY+KCG +++ + +F +   + N++
Sbjct: 1084 ACTNVANLRHGKEIHGYAMVIGVEKDVYVRSALVDMYAKCGYISEAKILFYMMPER-NTV 1142

Query: 386  LWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESM 445
             WN++I     HGY  +AI LF+ M  S  K D +T   +LNAC+H+G+V+ G + F  M
Sbjct: 1143 TWNSLIFGYANHGYCNEAIELFNQMEESDTKLDHLTFTAVLNACSHAGMVELGESLFXKM 1202

Query: 446  THDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDM 505
                 I P  EH+AC+++LL +AG   +  + ++ MP E D ++W AL G CR HGNI++
Sbjct: 1203 QEKYRIEPRLEHYACMVDLLGRAGKLSEAYDLIKAMPVEPDKFVWGALLGACRNHGNIEL 1262

Query: 506  GRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIE 562
                 + L +  P+S  +  LLS++Y+  G+     K+++++ +R+F K    SWIE
Sbjct: 1263 AEVAAEHLFELEPESPGSSLLLSNLYADAGRWGNAAKMKKMMKQRKFGKFPGCSWIE 1319



 Score =  131 bits (330), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 71/311 (22%), Positives = 144/311 (46%), Gaps = 31/311 (9%)

Query: 120 FSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRF 179
           F   +++  YA  G +  A  ++D M   D  + N +I  YA++G   +  + +  +   
Sbjct: 149 FVCTSLIDMYAKCGEVDSAVRVYDKMTSLDAATCNCLISAYARNGFFVQAFQVFMQIGNM 208

Query: 180 SISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDA 239
               N ++++ +L +C  +  ++  +Q+H  V+   +LS   + ++++  Y+KCG + +A
Sbjct: 209 GTRPNHYTYSTMLAVCGTISAIQEGKQLHAHVVKMQYLSETAVGNALLTLYSKCGMMEEA 268

Query: 240 RRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQ 299
             +F+    R++++WT  ++G+ + GD + A K F+ M E                    
Sbjct: 269 EIVFESLRQRNIISWTASINGFYQHGDFKKALKQFSMMRESG------------------ 310

Query: 300 KALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLI 359
                        I PN+ TFS  L +C  +     G+  H  +I+    S   V +++I
Sbjct: 311 -------------IEPNEFTFSIVLASCGCVKDFIDGRMFHTQVIKKGMASGVFVGTAII 357

Query: 360 DMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDK 419
           DMYS  G +++  + F       +++ WN +I+    +   E+A+  F  MV+  V  ++
Sbjct: 358 DMYSGLGEMDEAEKQFKQMGRAASNVSWNALIAGYVLNEKIEKAMEAFCRMVKEDVACNE 417

Query: 420 ITLAVILNACT 430
            T + I  AC+
Sbjct: 418 FTYSNIFKACS 428



 Score =  129 bits (323), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 101/407 (24%), Positives = 188/407 (46%), Gaps = 60/407 (14%)

Query: 105 VDARKVFDKI-----PVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIG 159
           VD +K  + I     P K   S  N++ G+ +L    +A  LF+   +R  VS    I  
Sbjct: 24  VDLQKNINPIISASGPYKGCMSKGNVVGGWVDL---NNACILFEKTPKRIGVS----ITE 76

Query: 160 YAKSGAV---EEGLKFYKVLRRFSISCNEFSFA--------GILTICVKLEELKLTRQVH 208
             +SG     EEG+K      R      EF             L+ C +   ++L R+ H
Sbjct: 77  SHRSGCTDDPEEGVKEAGFFTRNETPHVEFGGGFPHRQYVFSALSFCGREGCVELGRRWH 136

Query: 209 GQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDME 268
             V+  G  S+  + +S++D YA                               K G+++
Sbjct: 137 CFVVKIGLGSDEFVCTSLIDMYA-------------------------------KCGEVD 165

Query: 269 SASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACA 328
           SA +++++M   +  +   LI+ Y RNG   +A ++F ++  +  RPN +T+S+ L  C 
Sbjct: 166 SAVRVYDKMTSLDAATCNCLISAYARNGFFVQAFQVFMQIGNMGTRPNHYTYSTMLAVCG 225

Query: 329 SIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWN 388
           +I +++ GKQ+H  +++  + S T V ++L+ +YSKCG + +   VF+ +  + N + W 
Sbjct: 226 TISAIQEGKQLHAHVVKMQYLSETAVGNALLTLYSKCGMMEEAEIVFE-SLRQRNIISWT 284

Query: 389 TMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLT--YFESMT 446
             I+   QHG  ++A++ F  M  S ++P++ T +++L +C   G V++ +    F +  
Sbjct: 285 ASINGFYQHGDFKKALKQFSMMRESGIEPNEFTFSIVLASC---GCVKDFIDGRMFHTQV 341

Query: 447 HDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNAL 493
              G+         +I++ +  G  D+   Q ++M     +  WNAL
Sbjct: 342 IKKGMASGVFVGTAIIDMYSGLGEMDEAEKQFKQMGRAASNVSWNAL 388


>gi|302766513|ref|XP_002966677.1| hypothetical protein SELMODRAFT_85284 [Selaginella moellendorffii]
 gi|300166097|gb|EFJ32704.1| hypothetical protein SELMODRAFT_85284 [Selaginella moellendorffii]
          Length = 556

 Score =  290 bits (743), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 156/489 (31%), Positives = 273/489 (55%), Gaps = 11/489 (2%)

Query: 53  ETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFD 112
           E    +L+  A  +SL   +R+H H+  T        L N LIS Y +C    ++++VF+
Sbjct: 40  EIYTALLKSYAHKQSLDDARRLHAHMIQTGFDR-LQILGNLLISTYGRCRDPGNSQRVFE 98

Query: 113 KIPVKNLFSYNNMLSGYANLGMMKHA--RNLFDNMAERDVVSWNTMIIGYAKSGAVEEGL 170
            +  +N++S+ +++S YA  G +  +    LFD M +R+  SWN+MI+GYAK+G   EG 
Sbjct: 99  NLERRNIYSWISLVSAYAQNGHLPESWRAELFDAMPDRETASWNSMIVGYAKNGHSREGF 158

Query: 171 KFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTG-FLSNVVISSSIVDA 229
             +  +    +  +  +F G++     L  LKL R +H ++L++G F  +V + ++IV  
Sbjct: 159 HLFLAMTLEGVEPDRITFLGVIDASGNLGNLKLARMIHEEILLSGEFQHDVFVGTAIVGM 218

Query: 230 YAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEK-NPVSWTTL 288
           Y +C    DA+R FD    ++ ++WT++   Y + G +E A  +F + P+K N VSWT +
Sbjct: 219 YGRCRSPDDAQRSFDSMSVKNSVSWTSLAVAYGQNGCLERALSVFEQTPDKTNVVSWTAM 278

Query: 289 IAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNF 348
           I  Y  N   ++AL+LF +M +    P+    ++ L ACA+I  L  G+ +H  L   + 
Sbjct: 279 IVAYVENNDEREALDLFKKMDVEGTSPDVVILTAVLDACANISGLSQGRAIHRALEDGSV 338

Query: 349 RSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNK---ENSMLWNTMISALTQHGYDEQAIR 405
              T V + LIDMY KCG + D + VF+  + +   E ++ W +M++A  Q+G+  +A+ 
Sbjct: 339 -PLTEVATGLIDMYGKCGSVVDAKLVFNALEEQLGAEMTLPWTSMVTAFAQNGHGLEAVE 397

Query: 406 LFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELL 465
           LF  M    V+ ++I+L  +L AC+HSGL+ EGL+YF S+  D G+    EH  C I+LL
Sbjct: 398 LFRSMELHGVEANEISLVSVLCACSHSGLITEGLSYFSSIEQDRGLALLPEHQVCWIDLL 457

Query: 466 AQAGCSDQLMNQLEKMPYEHDSYL--WNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSAT 523
            + G  +   N +E +P   D  +  W A  G C+ H +    ++  ++L++ + + S++
Sbjct: 458 GRIGKLELAENAMESIPLSRDEKIIAWTAFLGACKTHDDERRAKRAAEKLVELDSKLSSS 517

Query: 524 HGLLSSIYS 532
           + +LS+++S
Sbjct: 518 YIMLSNVHS 526



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 63/261 (24%), Positives = 119/261 (45%), Gaps = 41/261 (15%)

Query: 317 QHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFD 376
           Q  +++ L + A   SL   +++H  +I+T F    I+ + LI  Y +C    + ++VF+
Sbjct: 39  QEIYTALLKSYAHKQSLDDARRLHAHMIQTGFDRLQILGNLLISTYGRCRDPGNSQRVFE 98

Query: 377 LTDNKENSMLWNTMISALTQHGYDEQAIR--LFHDMVRSSVKPDKITLA--VILNACTHS 432
             + + N   W +++SA  Q+G+  ++ R  LF  M      PD+ T +   ++     +
Sbjct: 99  NLERR-NIYSWISLVSAYAQNGHLPESWRAELFDAM------PDRETASWNSMIVGYAKN 151

Query: 433 GLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMN-QLEKMPYE------- 484
           G  +EG   F +MT + G+ P++      I  L     S  L N +L +M +E       
Sbjct: 152 GHSREGFHLFLAMTLE-GVEPDR------ITFLGVIDASGNLGNLKLARMIHEEILLSGE 204

Query: 485 --HDSYLWNA---LHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRL 539
             HD ++  A   ++G CR   + D  ++  D +  +N  S       +S+  A G+   
Sbjct: 205 FQHDVFVGTAIVGMYGRCR---SPDDAQRSFDSMSVKNSVS------WTSLAVAYGQNGC 255

Query: 540 VEKVRQLINERQFKKEQAISW 560
           +E+   +  E+   K   +SW
Sbjct: 256 LERALSVF-EQTPDKTNVVSW 275


>gi|147841045|emb|CAN68552.1| hypothetical protein VITISV_014227 [Vitis vinifera]
          Length = 1309

 Score =  290 bits (743), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 159/517 (30%), Positives = 270/517 (52%), Gaps = 41/517 (7%)

Query: 82  QRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPV----KNLFSYNNMLSGYANLGMMKH 137
           QR  P  +     IS    C +    R+V  +  V    +N+   N ++  Y+    +  
Sbjct: 58  QRLNPKFY-----ISALVNCRNLTQVRQVHAQASVHGMLENIVVANKLIYFYSYYRALDD 112

Query: 138 ARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVK 197
           A  LFD M  RD VSW+ M+ G+AK G        ++ L R     + ++   ++  C  
Sbjct: 113 AYGLFDGMCVRDSVSWSVMVGGFAKVGDYINCFGTFRELIRCGARPDNYTLPFVIRACRD 172

Query: 198 LEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTM 257
           L+ L++ R +H  V   G   +  + +++VD Y KC E+ D                   
Sbjct: 173 LKNLQMGRLIHHIVYKFGLDLDHFVCAALVDMYVKCREIED------------------- 213

Query: 258 VSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQ 317
                       A  LF++M E++ V+WT +I GY   G   ++L LF +M    + P++
Sbjct: 214 ------------ARFLFDKMQERDLVTWTVMIGGYAECGKANESLVLFEKMREEGVVPDK 261

Query: 318 HTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDL 377
               + + ACA + ++   + +  ++ R  F+ + I+ +++IDMY+KCGC+   R++FD 
Sbjct: 262 VAMVTVVFACAKLGAMHKARIIDDYIQRKKFQLDVILGTAMIDMYAKCGCVESAREIFDR 321

Query: 378 TDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQE 437
            + K N + W+ MI+A   HG   +A+ LF  M+ S + PDKITLA +L AC+H+GLV+E
Sbjct: 322 MEEK-NVISWSAMIAAYGYHGQGRKALDLFPMMLSSGMLPDKITLASLLYACSHAGLVEE 380

Query: 438 GLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVC 497
           GL +F SM  D  +  + +H+ C+++LL +AG  D+ +  ++ M  E D  LW A  G C
Sbjct: 381 GLRFFSSMWEDYSVRTDVKHYTCVVDLLGRAGRLDEALKLIKSMTIEKDEGLWGAFLGAC 440

Query: 498 RIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQA 557
           R H ++ +  K    L++   Q+   + LLS+IY+  G+   V K+R L+++R+ KK   
Sbjct: 441 RTHKDVVLAEKAATSLLELQSQNPGHYVLLSNIYANAGRWEDVAKIRDLMSQRRLKKTPG 500

Query: 558 ISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQM 594
            +WIE++NK H FSV D+ HP    +Y +L+ L+ ++
Sbjct: 501 WTWIEVDNKSHQFSVGDTTHPRSKEIYEMLKSLSNKL 537



 Score =  289 bits (740), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 149/479 (31%), Positives = 256/479 (53%), Gaps = 32/479 (6%)

Query: 116  VKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKV 175
            ++NL   N ++  Y+    +  A  LFD M  RD VSW+ M+ G+AK G        ++ 
Sbjct: 767  LQNLIVANKLVXFYSYYRALDDAYGLFDGMCVRDSVSWSVMVGGFAKVGDYMNCFGTFRE 826

Query: 176  LRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGE 235
            L R     + ++   ++  C  L+ L++ R +H  V   G   +  + +++VD Y KC E
Sbjct: 827  LIRCGARPDNYTLPFVIRACRDLKNLQMGRLIHHIVYKFGLDLDHFVCAALVDMYGKCRE 886

Query: 236  LSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRN 295
            + D                               A  LF++M E++ V+WT +I GY   
Sbjct: 887  IED-------------------------------ARFLFDKMXERDLVTWTVMIGGYAEC 915

Query: 296  GLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVM 355
            G   ++L LF +M    + P++    + + ACA + ++   + +  ++ R  F+ + I+ 
Sbjct: 916  GNANESLVLFDKMREEGVVPDKVAMVTVVFACAKLGAMHKARTIDDYIQRKKFQLDVILG 975

Query: 356  SSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSV 415
            +++IDM++KCGC+   R++FD  + K N + W+ MI+A   HG   +A+ LF  M+RS +
Sbjct: 976  TAMIDMHAKCGCVESAREIFDRMEEK-NVISWSAMIAAYGYHGQGRKALDLFPMMLRSGI 1034

Query: 416  KPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLM 475
             P+KITL  +L AC+H+GLV+EGL +F  M  D  +  + +H+ C+++LL +AG  D+ +
Sbjct: 1035 LPNKITLVSLLYACSHAGLVEEGLRFFSXMWEDYSVRXDVKHYTCVVDLLGRAGRLDEAL 1094

Query: 476  NQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALG 535
              +  M  E D  LW A  G CR H ++ +  K    L++  PQ+   + LLS+IY+  G
Sbjct: 1095 KLIXSMTXEKDEGLWGAFLGACRTHKDVXLAEKAATSLLELQPQNPGHYILLSNIYANAG 1154

Query: 536  KGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQM 594
            +   V K+R L+++R+ KK    +WIE++NK H FSV D+ HP    +Y +L+ L  ++
Sbjct: 1155 RWEDVAKIRDLMSQRRLKKIPGWTWIEVDNKSHQFSVGDTTHPRSKEIYEMLKSLGNKL 1213



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 83/314 (26%), Positives = 139/314 (44%), Gaps = 43/314 (13%)

Query: 201  LKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSG 260
            L   RQVH Q  V G L N+++++ +V  Y+    L DA  LFD    RD ++W+ MV G
Sbjct: 751  LTQVRQVHXQASVHGMLQNLIVANKLVXFYSYYRALDDAYGLFDGMCVRDSVSWSVMVGG 810

Query: 261  YAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTF 320
            +AK+GD  +    F E+                R G                 RP+ +T 
Sbjct: 811  FAKVGDYMNCFGTFREL---------------IRCG----------------ARPDNYTL 839

Query: 321  SSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDN 380
               + AC  + +L+ G+ +H  + +     +  V ++L+DMY KC  + D R +FD    
Sbjct: 840  PFVIRACRDLKNLQMGRLIHHIVYKFGLDLDHFVCAALVDMYGKCREIEDARFLFDKMXE 899

Query: 381  KENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLT 440
            + + + W  MI    + G   +++ LF  M    V PDK+ +  ++ AC   G + +  T
Sbjct: 900  R-DLVTWTVMIGGYAECGNANESLVLFDKMREEGVVPDKVAMVTVVFACAKLGAMHKART 958

Query: 441  ---YFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVC 497
               Y +     L +I        +I++ A+ GC +      ++M  E +   W+A+    
Sbjct: 959  IDDYIQRKKFQLDVILG----TAMIDMHAKCGCVESAREIFDRME-EKNVISWSAMIAAY 1013

Query: 498  RIHGNIDMGRKVVD 511
              HG    GRK +D
Sbjct: 1014 GYHGQ---GRKALD 1024



 Score =  115 bits (289), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 84/360 (23%), Positives = 158/360 (43%), Gaps = 72/360 (20%)

Query: 43  LAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCG 102
           L + G R    TL F+++ C + K+L++G+ +H H+          F+   L+ MY KC 
Sbjct: 151 LIRCGARPDNYTLPFVIRACRDLKNLQMGRLIH-HIVYKFGLDLDHFVCAALVDMYVKCR 209

Query: 103 SDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAK 162
              DAR +FDK+  ++L ++  M+ GYA  G    +  LF+ M E  VV           
Sbjct: 210 EIEDARFLFDKMQERDLVTWTVMIGGYAECGKANESLVLFEKMREEGVVP---------- 259

Query: 163 SGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVI 222
                                ++ +   ++  C KL  +   R +   +    F  +V++
Sbjct: 260 ---------------------DKVAMVTVVFACAKLGAMHKARIIDDYIQRKKFQLDVIL 298

Query: 223 SSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNP 282
            ++++D YAKCG +  AR +FD  + ++V++W+ M++ Y                     
Sbjct: 299 GTAMIDMYAKCGCVESAREIFDRMEEKNVISWSAMIAAY--------------------- 337

Query: 283 VSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQV--- 339
                   GY  +G G+KAL+LF  M+   + P++ T +S L AC+    ++ G +    
Sbjct: 338 --------GY--HGQGRKALDLFPMMLSSGMLPDKITLASLLYACSHAGLVEEGLRFFSS 387

Query: 340 --HGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQH 397
               + +RT+ +  T V    +D+  + G L++  ++      +++  LW   + A   H
Sbjct: 388 MWEDYSVRTDVKHYTCV----VDLLGRAGRLDEALKLIKSMTIEKDEGLWGAFLGACRTH 443



 Score =  115 bits (288), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 84/368 (22%), Positives = 157/368 (42%), Gaps = 64/368 (17%)

Query: 31   GQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFL 90
            G       +   L + G R    TL F+++ C + K+L++G+ +H H+          F+
Sbjct: 815  GDYMNCFGTFRELIRCGARPDNYTLPFVIRACRDLKNLQMGRLIH-HIVYKFGLDLDHFV 873

Query: 91   SNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDV 150
               L+ MY KC    DAR +FDK+  ++L ++  M+ GYA  G    +  LFD M E  V
Sbjct: 874  CAALVDMYGKCREIEDARFLFDKMXERDLVTWTVMIGGYAECGNANESLVLFDKMREEGV 933

Query: 151  VSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQ 210
            V                                ++ +   ++  C KL  +   R +   
Sbjct: 934  VP-------------------------------DKVAMVTVVFACAKLGAMHKARTIDDY 962

Query: 211  VLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESA 270
            +    F  +V++ ++++D +AKCG +  AR +FD  + ++V++W+ M++ Y         
Sbjct: 963  IQRKKFQLDVILGTAMIDMHAKCGCVESAREIFDRMEEKNVISWSAMIAAY--------- 1013

Query: 271  SKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASI 330
                                GY  +G G+KAL+LF  M+   I PN+ T  S L AC+  
Sbjct: 1014 --------------------GY--HGQGRKALDLFPMMLRSGILPNKITLVSLLYACSHA 1051

Query: 331  VSLKHGKQVHGFLIRT-NFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNT 389
              ++ G +    +    + R +    + ++D+  + G L++  ++      +++  LW  
Sbjct: 1052 GLVEEGLRFFSXMWEDYSVRXDVKHYTCVVDLLGRAGRLDEALKLIXSMTXEKDEGLWGA 1111

Query: 390  MISALTQH 397
             + A   H
Sbjct: 1112 FLGACRTH 1119



 Score = 47.0 bits (110), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 51/222 (22%), Positives = 92/222 (41%), Gaps = 19/222 (8%)

Query: 339 VHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHG 398
           VHG L       N IV + L+  YS    L+D   +FD    + +S+ W+ M+    + G
Sbjct: 763 VHGML------QNLIVANKLVXFYSYYRALDDAYGLFDGMCVR-DSVSWSVMVGGFAKVG 815

Query: 399 YDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHH 458
                   F +++R   +PD  TL  ++ AC     +Q G      + +  G+  + +H 
Sbjct: 816 DYMNCFGTFRELIRCGARPDNYTLPFVIRACRDLKNLQMG-RLIHHIVYKFGL--DLDHF 872

Query: 459 AC--LIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQ 516
            C  L+++  +    +      +KM  E D   W  + G     GN +    + D++ ++
Sbjct: 873 VCAALVDMYGKCREIEDARFLFDKMX-ERDLVTWTVMIGGYAECGNANESLVLFDKMREE 931

Query: 517 N--PQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQ 556
              P   A    + ++  A  K   + K R + +  Q KK Q
Sbjct: 932 GVVPDKVA----MVTVVFACAKLGAMHKARTIDDYIQRKKFQ 969


>gi|297810061|ref|XP_002872914.1| hypothetical protein ARALYDRAFT_327675 [Arabidopsis lyrata subsp.
            lyrata]
 gi|297318751|gb|EFH49173.1| hypothetical protein ARALYDRAFT_327675 [Arabidopsis lyrata subsp.
            lyrata]
          Length = 1305

 Score =  290 bits (743), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 171/610 (28%), Positives = 300/610 (49%), Gaps = 45/610 (7%)

Query: 28   ISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPT 87
            +  G   +A+    ++   G +    T+  +LQ C+  +    G+++H ++ L       
Sbjct: 602  LQSGNWEKAVKLFRVMRFSGAKAYDSTMVKLLQVCSNKEGFAQGRQIHGYV-LRLGFESN 660

Query: 88   TFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMA- 146
              + N LI MY + G    +RKVF+ +  +NL S+N+++S Y  LG +  A  L D M  
Sbjct: 661  VSMCNSLIVMYSRNGKLESSRKVFNSMVDRNLSSWNSIVSSYTRLGYVDDAMGLLDEMET 720

Query: 147  ---ERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKL 203
               + D+V+WN+++ GYA      + +   K ++   +  N  S + +L    +   +KL
Sbjct: 721  CGLKPDIVTWNSLLSGYASKALSRDAIAVLKRIQIAGLKPNTSSISSLLQAVYEPGLVKL 780

Query: 204  TRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVL----------- 252
             + +HG V+      +V + ++++D Y K G L  AR +FD  D ++++           
Sbjct: 781  GKAIHGYVIRNQLWYDVYVETTLIDMYIKTGYLPYARMVFDMMDEKNIVAWNSLISGLSY 840

Query: 253  ------------------------TWTTMVSGYAKLGDMESASKLFNEMP----EKNPVS 284
                                    TW ++VSGYA  G  E A  +  +M     E N VS
Sbjct: 841  TGLLKEAEALISRMEKEGIKSNAVTWNSLVSGYATWGKTEKALAVVGKMKKNGVEPNVVS 900

Query: 285  WTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLI 344
            WT +++G ++NG     L++F +M    + PN  T SS L     +  L  GK+VH F +
Sbjct: 901  WTAILSGCSKNGNFGNGLKIFLKMQEEGVSPNSATISSLLRILGCLSLLYSGKEVHSFCL 960

Query: 345  RTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAI 404
            + N   +  V ++L+DMY+K G L    ++F    NK  +  WN MI         E+ I
Sbjct: 961  KNNLTRDAHVATALVDMYAKSGDLQSAAEIFWGIKNKPLAS-WNCMIMGYAMFRRGEEGI 1019

Query: 405  RLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIEL 464
             +F+ M+ + ++PD IT   +L+ C +SGLV+EG  YF+ M    G+IP  EH +C++EL
Sbjct: 1020 AVFNAMLEAGIEPDAITFTSVLSVCKNSGLVREGWKYFDLMRSHYGVIPTIEHCSCMVEL 1079

Query: 465  LAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATH 524
            L ++G  D+  + +  MP + D+ +W A    C+IH ++++      +L    P +SA +
Sbjct: 1080 LGRSGYLDEAWDFIRTMPLKPDATIWGAFLSSCKIHRDLELAEIAWKRLQVLEPHNSANY 1139

Query: 525  GLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLY 584
             ++ ++YS L +   VE++R  ++  + + +   SWI+I+  VH F      HP    +Y
Sbjct: 1140 MMMINLYSNLNRWGDVERIRNSMSNNRVRVQDLWSWIQIDQTVHIFYAEGKAHPDEGEIY 1199

Query: 585  SVLEQLAGQM 594
              L +L  +M
Sbjct: 1200 FELYKLVSEM 1209



 Score =  187 bits (476), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 107/371 (28%), Positives = 188/371 (50%), Gaps = 42/371 (11%)

Query: 138 ARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVK 197
           A  +FD M +RD ++WN +++   +SG  E+ +K ++V+R       + +   +L +C  
Sbjct: 579 ANKIFDEMPKRDDLAWNEIVMVNLQSGNWEKAVKLFRVMRFSGAKAYDSTMVKLLQVCSN 638

Query: 198 LEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTM 257
            E     RQ+HG VL  GF SNV + +S++  Y++ G+L  +R++F+    R++ +W ++
Sbjct: 639 KEGFAQGRQIHGYVLRLGFESNVSMCNSLIVMYSRNGKLESSRKVFNSMVDRNLSSWNSI 698

Query: 258 VSGYAKLGDMESASKLFNEMP----EKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRI 313
           VS Y +LG ++ A  L +EM     + + V+W +L++GY    L + A+ +  R+ I  +
Sbjct: 699 VSSYTRLGYVDDAMGLLDEMETCGLKPDIVTWNSLLSGYASKALSRDAIAVLKRIQIAGL 758

Query: 314 RPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQ 373
           +PN  + SS L A      +K GK +HG++IR     +  V ++LIDMY K G L   R 
Sbjct: 759 KPNTSSISSLLQAVYEPGLVKLGKAIHGYVIRNQLWYDVYVETTLIDMYIKTGYLPYARM 818

Query: 374 VFDLTDN----------------------------------KENSMLWNTMISALTQHGY 399
           VFD+ D                                   K N++ WN+++S     G 
Sbjct: 819 VFDMMDEKNIVAWNSLISGLSYTGLLKEAEALISRMEKEGIKSNAVTWNSLVSGYATWGK 878

Query: 400 DEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHA 459
            E+A+ +   M ++ V+P+ ++   IL+ C+ +G    GL  F  M  + G+ PN    +
Sbjct: 879 TEKALAVVGKMKKNGVEPNVVSWTAILSGCSKNGNFGNGLKIFLKMQEE-GVSPNSATIS 937

Query: 460 CLIELLAQAGC 470
            L+ +L   GC
Sbjct: 938 SLLRIL---GC 945



 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 107/464 (23%), Positives = 210/464 (45%), Gaps = 58/464 (12%)

Query: 109 KVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEE 168
           K+ D+  ++  F    +++ Y   G   +A  +F     R+ VSW   +       A + 
Sbjct: 449 KLIDRFELE--FISKCLITRYLEFGEFGYASAVFFLGFPRNQVSWRDFL-----EKAEDF 501

Query: 169 GLKFYKVLRRF------SISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVI 222
           G++ YKVL  F       ++ +E   A +  IC  L    L   +HG ++          
Sbjct: 502 GVEKYKVLEEFVRLQNKGVNFDEVVLAMVFRICAVLMYRFLGFTIHGGLI---------- 551

Query: 223 SSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNP 282
                            +R  D +D R V   + ++  Y +   ++ A+K+F+EMP+++ 
Sbjct: 552 -----------------KRGLDNSDTRVV---SALMGFYGRCVSLDLANKIFDEMPKRDD 591

Query: 283 VSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGF 342
           ++W  ++    ++G  +KA++LF  M     +    T    L  C++      G+Q+HG+
Sbjct: 592 LAWNEIVMVNLQSGNWEKAVKLFRVMRFSGAKAYDSTMVKLLQVCSNKEGFAQGRQIHGY 651

Query: 343 LIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFD-LTDNKENSMLWNTMISALTQHGYDE 401
           ++R  F SN  + +SLI MYS+ G L   R+VF+ + D   +S  WN+++S+ T+ GY +
Sbjct: 652 VLRLGFESNVSMCNSLIVMYSRNGKLESSRKVFNSMVDRNLSS--WNSIVSSYTRLGYVD 709

Query: 402 QAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACL 461
            A+ L  +M    +KPD +T   +L+      L ++ +   + +    G+ PN    + L
Sbjct: 710 DAMGLLDEMETCGLKPDIVTWNSLLSGYASKALSRDAIAVLKRI-QIAGLKPNTSSISSL 768

Query: 462 IELLAQAG---CSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNP 518
           ++ + + G       +   + +    +D Y+   L  +    G +   R V D + ++N 
Sbjct: 769 LQAVYEPGLVKLGKAIHGYVIRNQLWYDVYVETTLIDMYIKTGYLPYARMVFDMMDEKNI 828

Query: 519 QSSATHGLLSSIYSALGKGRLVEKVRQLIN--ERQFKKEQAISW 560
            +       +S+ S L    L+++   LI+  E++  K  A++W
Sbjct: 829 VA------WNSLISGLSYTGLLKEAEALISRMEKEGIKSNAVTW 866


>gi|147810325|emb|CAN65024.1| hypothetical protein VITISV_026273 [Vitis vinifera]
          Length = 805

 Score =  290 bits (743), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 155/456 (33%), Positives = 247/456 (54%), Gaps = 14/456 (3%)

Query: 144 NMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELK- 202
           N++ R++  +N+MI GY  S +    +  Y  +  + +  N ++F  ++  C  L     
Sbjct: 343 NLSLRNIFMYNSMIRGYVLSHSPTRAILCYLDMLNYGLLANNYTFPPLIKACTTLGSSSK 402

Query: 203 -LTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGY 261
            +   VH  V+  GF  +  + S++++ Y+   ++  AR LFD    RDV+ WT M+ GY
Sbjct: 403 LIGCLVHAHVVTFGFDEDPFVVSALIEFYSLNFDMGTARTLFDRIPNRDVVLWTAMIDGY 462

Query: 262 AKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFS 321
            K+GD+E A  LF +MPE+N +SW+ ++A Y+R G  ++ L LF RM      PN+    
Sbjct: 463 GKMGDVEHARILFEDMPERNAISWSAVMAAYSRVGDFKEVLCLFRRMQEAGTMPNESVLV 522

Query: 322 SCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNK 381
           S L ACA + +L  G  VH +  + NF SN I+ ++L+DMYSKCGC+      F    NK
Sbjct: 523 SVLTACAHLGALAQGLWVHSYAKQCNFDSNPILATALVDMYSKCGCVESALSTFQGIPNK 582

Query: 382 ENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTY 441
           +    WN MIS +  +G   +++ LF+ M+ +  +P + T   +L ACTH+ LV+EGL  
Sbjct: 583 DAGA-WNAMISGVAMNGDAWKSLELFNKMISNGTQPTETTFVAVLTACTHARLVREGLKL 641

Query: 442 FESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEH-------DSYLWNALH 494
           FE M+ + G+ P  EH+ACL++L+A+AG    ++ + EK   E        D+ +W A  
Sbjct: 642 FEQMSSNYGVEPQXEHYACLVDLMARAG----MLAEAEKFIEEKMGGLGRGDANVWGAXL 697

Query: 495 GVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKK 554
           G CR +GNI++G +V  +L D       TH L  ++Y   G     ++VR+LI+E   KK
Sbjct: 698 GACRTYGNIEVGNRVWKKLADMGVADCGTHVLSYNLYREAGWDMEAKRVRRLISEXGMKK 757

Query: 555 EQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQL 590
           +   S IE++  V  F   D  H     +   L+ L
Sbjct: 758 KPGCSIIEVDGTVEEFLAGDLSHSQAPQICKTLDSL 793



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 103/413 (24%), Positives = 181/413 (43%), Gaps = 59/413 (14%)

Query: 18  NCLIQSFLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAE--SKSLKLGKRVH 75
           N +I+ ++  +S       +  LD+L   G+     T   +++ C    S S  +G  VH
Sbjct: 353 NSMIRGYV--LSHSPTRAILCYLDML-NYGLLANNYTFPPLIKACTTLGSSSKLIGCLVH 409

Query: 76  LHLKLTQRKTPTTFLSNHLISMY---FKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANL 132
            H+ +T       F+ + LI  Y   F  G+   AR +FD+IP +++  +  M+ GY  +
Sbjct: 410 AHV-VTFGFDEDPFVVSALIEFYSLNFDMGT---ARTLFDRIPNRDVVLWTAMIDGYGKM 465

Query: 133 GMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGIL 192
           G ++HAR LF++M ER+ +SW+ ++  Y++ G  +E L  ++ ++      NE     +L
Sbjct: 466 GDVEHARILFEDMPERNAISWSAVMAAYSRVGDFKEVLCLFRRMQEAGTMPNESVLVSVL 525

Query: 193 TICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVL 252
           T C  L  L     VH       F SN ++++++VD Y+KCG +  A   F     +D  
Sbjct: 526 TACAHLGALAQGLWVHSYAKQCNFDSNPILATALVDMYSKCGCVESALSTFQGIPNKDAG 585

Query: 253 TWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILR 312
            W  M+SG A  GD                 +W              K+LELF +M+   
Sbjct: 586 AWNAMISGVAMNGD-----------------AW--------------KSLELFNKMISNG 614

Query: 313 IRPNQHTFSSCLCACASIVSLKHGKQV-HGFLIRTNFRSNTIV------MSSLIDMYSKC 365
            +P + TF + L AC       H + V  G  +     SN  V       + L+D+ ++ 
Sbjct: 615 TQPTETTFVAVLTACT------HARLVREGLKLFEQMSSNYGVEPQXEHYACLVDLMARA 668

Query: 366 GCLNDGRQVFDLTD---NKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSV 415
           G L +  +  +       + ++ +W   + A   +G  E   R++  +    V
Sbjct: 669 GMLAEAEKFIEEKMGGLGRGDANVWGAXLGACRTYGNIEVGNRVWKKLADMGV 721


>gi|49387750|dbj|BAD26238.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|218190136|gb|EEC72563.1| hypothetical protein OsI_05996 [Oryza sativa Indica Group]
          Length = 803

 Score =  290 bits (743), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 169/607 (27%), Positives = 305/607 (50%), Gaps = 81/607 (13%)

Query: 16  PNNCLIQSFLS-LISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAES--------K 66
           PN     + +  L   G + +A+     + + G+ +   +++ +L  CA++        +
Sbjct: 205 PNEVSFTAMMGGLAQTGSIDDALRLFARMCRSGVPVDPVSVSSVLGACAQACATDYSVAR 264

Query: 67  SLKLGKRVHLHLKLTQRKT--PTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNN 124
           + +LG+ +H    L  RK       + N LI MY KC    +A KVF+ +P   + S+N 
Sbjct: 265 AFRLGQAIH---ALVVRKGFGSDQHVGNSLIDMYTKCVEMDEAVKVFESLPSVTIVSWNI 321

Query: 125 MLSGYAN----------LGMMKHA-------------------------RNLFDNMAERD 149
           +++G+            L +M+ A                         R +FD ++   
Sbjct: 322 LITGFGQEGSCAKAVEVLSLMQEAGFEPNEVTYSNLLASCIKARDVHSARAMFDKISRPS 381

Query: 150 VVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHG 209
           V +WNT++ GY +    ++ ++ ++ ++  ++  +  + A IL+ C KL  L   RQVH 
Sbjct: 382 VTTWNTLLSGYCQEEQHQDTIELFRRMQHQNVQPDRTTLAVILSSCSKLGILDFGRQVHS 441

Query: 210 QVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMES 269
             +     +++ ++S +VD Y+KC                               G +  
Sbjct: 442 ASVRFLLHNDMFVASGLVDMYSKC-------------------------------GQIGI 470

Query: 270 ASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACAS 329
           A  +FN+M E++ V W ++I+G T + L ++A + F +M    I P + +++S + +C+ 
Sbjct: 471 ARSIFNKMTERDVVCWNSIISGLTIHSLNKEAFDFFKQMRENGIMPTESSYASMINSCSR 530

Query: 330 IVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNT 389
           + S+ HG+Q+H  +++  +  N  V S+LIDMY+KCG ++D R  FD T   +N + WN 
Sbjct: 531 LSSIPHGRQIHAQVMKDGYDQNVYVGSALIDMYAKCGNMDDARLFFD-TMMMKNIVAWNE 589

Query: 390 MISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDL 449
           MI    Q+G  ++A+ LF  M+ +  KPD +T   +L  C+HSGLV + + +F SM +  
Sbjct: 590 MIHGYAQNGLGDKAVELFEYMLTTEQKPDAVTFIAVLTGCSHSGLVDKAMAFFNSMENSY 649

Query: 450 GIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKV 509
           GIIP  EH+ CLI+ L +AG   ++   + KMP + D  +W  L   C +H N ++G+  
Sbjct: 650 GIIPLAEHYTCLIDALGRAGRFVEVEALIHKMPCKDDPIIWEVLLAACVVHHNAELGKCA 709

Query: 510 VDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHA 569
            + L   +P++ + + LLS+IY++LG+      VR L++ R   K +  SWI+ ++ V A
Sbjct: 710 AEHLFRIDPKNPSPYVLLSNIYASLGRHGDASAVRALMSNRGVVKGRGYSWIDQKDGVRA 769

Query: 570 FSVSDSL 576
           F V+D L
Sbjct: 770 FMVADDL 776



 Score =  174 bits (441), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 145/597 (24%), Positives = 260/597 (43%), Gaps = 112/597 (18%)

Query: 9   GINRKNLPNNCLIQSFLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSL 68
           G+ R+N  +   + S L+  S G   EA+     +   G+     TLA +L  C    +L
Sbjct: 99  GMPRRNAVSWNTVISALAR-SPGDGGEAVEMYGRMRAEGLLPTHFTLASVLSACGGLAAL 157

Query: 69  KLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSG 128
             G+R H  + +        F+ N L+ MY KCGS  DA ++F  +   N  S+  M+ G
Sbjct: 158 GDGRRCH-GVAVKVGLDANQFVENALLGMYTKCGSVGDAVRLFYGMARPNEVSFTAMMGG 216

Query: 129 YANLGMMKHARNLFDNMAER----DVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCN 184
            A  G +  A  LF  M       D VS ++++   A++ A +     Y V R F     
Sbjct: 217 LAQTGSIDDALRLFARMCRSGVPVDPVSVSSVLGACAQACATD-----YSVARAF----- 266

Query: 185 EFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFD 244
                            +L + +H  V+  GF S+  + +S++D Y KC E+ +A ++F+
Sbjct: 267 -----------------RLGQAIHALVVRKGFGSDQHVGNSLIDMYTKCVEMDEAVKVFE 309

Query: 245 ETDARDVLTWTTMVSGYAKLG-----------------------------------DMES 269
              +  +++W  +++G+ + G                                   D+ S
Sbjct: 310 SLPSVTIVSWNILITGFGQEGSCAKAVEVLSLMQEAGFEPNEVTYSNLLASCIKARDVHS 369

Query: 270 ASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACAS 329
           A  +F+++   +  +W TL++GY +    Q  +ELF RM    ++P++ T +  L +C+ 
Sbjct: 370 ARAMFDKISRPSVTTWNTLLSGYCQEEQHQDTIELFRRMQHQNVQPDRTTLAVILSSCSK 429

Query: 330 IVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNT 389
           +  L  G+QVH   +R    ++  V S L+DMYSKCG +   R +F+    ++  + WN+
Sbjct: 430 LGILDFGRQVHSASVRFLLHNDMFVASGLVDMYSKCGQIGIARSIFNKMTERD-VVCWNS 488

Query: 390 MISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDL 449
           +IS LT H  +++A   F  M  + + P + + A ++N+C+                  L
Sbjct: 489 IISGLTIHSLNKEAFDFFKQMRENGIMPTESSYASMINSCSR-----------------L 531

Query: 450 GIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKV 509
             IP+                  Q+  Q+ K  Y+ + Y+ +AL  +    GN+D  R  
Sbjct: 532 SSIPHGR----------------QIHAQVMKDGYDQNVYVGSALIDMYAKCGNMDDARLF 575

Query: 510 VDQLIDQN--PQSSATHGLLSSIYSALGKG-RLVEKVRQLINERQFKKEQAISWIEI 563
            D ++ +N    +   HG     Y+  G G + VE    ++   Q  K  A+++I +
Sbjct: 576 FDTMMMKNIVAWNEMIHG-----YAQNGLGDKAVELFEYMLTTEQ--KPDAVTFIAV 625



 Score =  155 bits (393), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 113/439 (25%), Positives = 196/439 (44%), Gaps = 59/439 (13%)

Query: 88  TFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAE 147
           TFL+N L+ +Y + G    A   F  +P  N +SYN  LS     G +  AR+L   M  
Sbjct: 43  TFLANRLVELYSRAGLPRHALLAFRALPSPNDYSYNAALSAACRAGDLDAARDLLGGMPR 102

Query: 148 RDVVSWNTMIIGYAKS-GAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQ 206
           R+ VSWNT+I   A+S G   E ++ Y  +R   +    F+ A +L+ C  L  L   R+
Sbjct: 103 RNAVSWNTVISALARSPGDGGEAVEMYGRMRAEGLLPTHFTLASVLSACGGLAALGDGRR 162

Query: 207 VHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGD 266
            HG  +  G  +N  + ++++  Y KCG + DA RLF      + +++T M+ G A+ G 
Sbjct: 163 CHGVAVKVGLDANQFVENALLGMYTKCGSVGDAVRLFYGMARPNEVSFTAMMGGLAQTGS 222

Query: 267 MESASKLFNEMPEK----NPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSS 322
           ++ A +LF  M       +PVS ++++                                +
Sbjct: 223 IDDALRLFARMCRSGVPVDPVSVSSVLG-------------------------------A 251

Query: 323 CLCACASIVSLKH----GKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLT 378
           C  ACA+  S+      G+ +H  ++R  F S+  V +SLIDMY+KC  +++  +VF+  
Sbjct: 252 CAQACATDYSVARAFRLGQAIHALVVRKGFGSDQHVGNSLIDMYTKCVEMDEAVKVFESL 311

Query: 379 DNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEG 438
            +    + WN +I+   Q G   +A+ +   M  +  +P+++T + +L +C  +  V   
Sbjct: 312 PSV-TIVSWNILITGFGQEGSCAKAVEVLSLMQEAGFEPNEVTYSNLLASCIKARDVHSA 370

Query: 439 LTYFESMTHD--------LGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLW 490
              F+ ++          L     +E H   IEL            +++    + D    
Sbjct: 371 RAMFDKISRPSVTTWNTLLSGYCQEEQHQDTIELF----------RRMQHQNVQPDRTTL 420

Query: 491 NALHGVCRIHGNIDMGRKV 509
             +   C   G +D GR+V
Sbjct: 421 AVILSSCSKLGILDFGRQV 439



 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 62/215 (28%), Positives = 115/215 (53%), Gaps = 2/215 (0%)

Query: 219 NVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMP 278
           +  +++ +V+ Y++ G    A   F    + +  ++   +S   + GD+++A  L   MP
Sbjct: 42  DTFLANRLVELYSRAGLPRHALLAFRALPSPNDYSYNAALSAACRAGDLDAARDLLGGMP 101

Query: 279 EKNPVSWTTLIAGYTRN-GLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGK 337
            +N VSW T+I+   R+ G G +A+E++ RM    + P   T +S L AC  + +L  G+
Sbjct: 102 RRNAVSWNTVISALARSPGDGGEAVEMYGRMRAEGLLPTHFTLASVLSACGGLAALGDGR 161

Query: 338 QVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQH 397
           + HG  ++    +N  V ++L+ MY+KCG + D  ++F     + N + +  M+  L Q 
Sbjct: 162 RCHGVAVKVGLDANQFVENALLGMYTKCGSVGDAVRLF-YGMARPNEVSFTAMMGGLAQT 220

Query: 398 GYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHS 432
           G  + A+RLF  M RS V  D ++++ +L AC  +
Sbjct: 221 GSIDDALRLFARMCRSGVPVDPVSVSSVLGACAQA 255


>gi|219363695|ref|NP_001136685.1| uncharacterized protein LOC100216817 [Zea mays]
 gi|194696634|gb|ACF82401.1| unknown [Zea mays]
          Length = 615

 Score =  290 bits (743), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 151/479 (31%), Positives = 250/479 (52%), Gaps = 41/479 (8%)

Query: 117 KNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLK-FYKV 175
           ++ F  N ++  Y+    +  A+ +FD M  RDVVSWNT +    + G V+     F ++
Sbjct: 162 EDTFVGNALIDAYSKNQGLSDAKKVFDEMTTRDVVSWNTAMAAMVRQGEVDAARSMFDEM 221

Query: 176 LRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGE 235
             + ++S N                                        +++D YAK GE
Sbjct: 222 PEKDTVSWN----------------------------------------TMLDGYAKAGE 241

Query: 236 LSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRN 295
              A  LF     R+V++W+T+VS Y K GDME A  +F++MP KN V+WT +++   + 
Sbjct: 242 AEKAFELFQRMPGRNVVSWSTVVSAYCKKGDMEMARVIFDKMPAKNLVTWTIMVSACAQK 301

Query: 296 GLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVM 355
           GL ++A  LFT MM   I  +     S L ACA   SL  GK++H  + +     +T+V 
Sbjct: 302 GLVEEAGRLFTEMMDAAIELDVIAVVSILAACAESGSLALGKRIHRHVRQRKLSRSTLVC 361

Query: 356 SSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSV 415
           ++L+DM+ KCGC+N    +FD    +++ + WN +I     HG  E+A+ LF  M +   
Sbjct: 362 NALMDMFCKCGCVNRADYIFDTEIVEKDLVSWNIIIGGFAMHGPGEKALELFAQMKQQGF 421

Query: 416 KPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLM 475
            PD +TL  +L+ACTH GLV+EG  +F +M  D GI P  EH+ C+++LL + G   + +
Sbjct: 422 HPDAVTLINVLSACTHMGLVEEGRRFFANMETDYGIKPQIEHYGCMVDLLGRGGLIKEAV 481

Query: 476 NQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALG 535
           + +++MP+E +  +W +L   CR+H N++     V++L +  P S+  + +LS+IY+  G
Sbjct: 482 DMIKRMPWEPNEVIWGSLLSACRLHKNVEYAELAVNELSNLQPSSAGNYAVLSNIYAEAG 541

Query: 536 KGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQM 594
           K   + K R  +     +K    SWIE+    H F+V D  HP  D +  ++++L+  +
Sbjct: 542 KWSDMAKARVQMKGTGSQKTAGSSWIELNEAFHEFTVGDRKHPESDQISDMIDRLSSHV 600



 Score = 75.9 bits (185), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 71/253 (28%), Positives = 111/253 (43%), Gaps = 52/253 (20%)

Query: 30  KGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRK-TPTT 88
           KG + EA      +    I L    +  IL  CAES SL LGKR+H H++  QRK + +T
Sbjct: 301 KGLVEEAGRLFTEMMDAAIELDVIAVVSILAACAESGSLALGKRIHRHVR--QRKLSRST 358

Query: 89  FLSNHLISMYFKCGSDVDARKVFD-KIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAE 147
            + N L+ M+ KCG    A  +FD +I  K+L S+N ++ G+A  G  + A  LF  M +
Sbjct: 359 LVCNALMDMFCKCGCVNRADYIFDTEIVEKDLVSWNIIIGGFAMHGPGEKALELFAQMKQ 418

Query: 148 R----DVVSWNTMIIGYAKSGAVEEGLKFYK----------------------------- 174
           +    D V+   ++      G VEEG +F+                              
Sbjct: 419 QGFHPDAVTLINVLSACTHMGLVEEGRRFFANMETDYGIKPQIEHYGCMVDLLGRGGLIK 478

Query: 175 ----VLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSS----- 225
               +++R     NE  +  +L+ C      +L + V    L    LSN+  SS+     
Sbjct: 479 EAVDMIKRMPWEPNEVIWGSLLSAC------RLHKNVEYAELAVNELSNLQPSSAGNYAV 532

Query: 226 IVDAYAKCGELSD 238
           + + YA+ G+ SD
Sbjct: 533 LSNIYAEAGKWSD 545



 Score = 55.5 bits (132), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 67/319 (21%), Positives = 131/319 (41%), Gaps = 39/319 (12%)

Query: 198 LEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTM 257
           L  L+  +++H Q+L  G   +   +S ++ +YA    +   R +F              
Sbjct: 36  LPRLRHVQELHAQLLKQGLHRDPHTASKLIASYALLRRVPACRCVFS------------- 82

Query: 258 VSGYAKLGDMESASKLFNE-MPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPN 316
                      +A  L N   P    +   TL+  Y  N L   AL +F   + LR R  
Sbjct: 83  -----------AAVALPNSPFPSSTTLLTKTLLRAYALNSLPHAALAVFLD-VPLRQR-G 129

Query: 317 QHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFD 376
             T+S  + A A+   L   +  H  +++     +T V ++LID YSK   L+D ++VFD
Sbjct: 130 TFTYSFLIKALAA-AGLTPVRGAHAHVVKLGSAEDTFVGNALIDAYSKNQGLSDAKKVFD 188

Query: 377 LTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQ 436
               + + + WNT ++A+ + G  + A  +F +M       D ++   +L+    +G  +
Sbjct: 189 EMTTR-DVVSWNTAMAAMVRQGEVDAARSMFDEMPEK----DTVSWNTMLDGYAKAGEAE 243

Query: 437 EGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGV 496
           +    F+ M        N    + ++    + G  +      +KMP + +   W  +   
Sbjct: 244 KAFELFQRMPGR-----NVVSWSTVVSAYCKKGDMEMARVIFDKMPAK-NLVTWTIMVSA 297

Query: 497 CRIHGNIDMGRKVVDQLID 515
           C   G ++   ++  +++D
Sbjct: 298 CAQKGLVEEAGRLFTEMMD 316


>gi|356542389|ref|XP_003539649.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g08820-like [Glycine max]
          Length = 676

 Score =  290 bits (743), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 175/576 (30%), Positives = 283/576 (49%), Gaps = 64/576 (11%)

Query: 16  PNNCLIQSFL-SLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRV 74
           PN  L  + +  ++S     +A+S    + Q G      T  F+L+ C      +L    
Sbjct: 64  PNIFLYNTLIRGMVSNDAFRDAVSVYASMRQHGFAPDNFTFPFVLKACT-----RLPHYF 118

Query: 75  HLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGM 134
           H+ L L               S+  K G D D   VF K  +  L+S N         G 
Sbjct: 119 HVGLSLH--------------SLVIKTGFDWD---VFVKTGLVCLYSKN---------GF 152

Query: 135 MKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTI 194
           +  AR +FD + E++VVSW  +I GY +SG   E L  ++ L    +  + F+   IL  
Sbjct: 153 LTDARKVFDEIPEKNVVSWTAIICGYIESGCFGEALGLFRGLLEMGLRPDSFTLVRILYA 212

Query: 195 CVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTW 254
           C ++ +L   R + G +  +G + NV +++S+VD YA                       
Sbjct: 213 CSRVGDLASGRWIDGYMRESGSVGNVFVATSLVDMYA----------------------- 249

Query: 255 TTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIR 314
                   K G ME A ++F+ M EK+ V W+ LI GY  NG+ ++AL++F  M    +R
Sbjct: 250 --------KCGSMEEARRVFDGMVEKDVVCWSALIQGYASNGMPKEALDVFFEMQRENVR 301

Query: 315 PNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQV 374
           P+ +       AC+ + +L+ G    G +    F SN ++ ++LID Y+KCG +   ++V
Sbjct: 302 PDCYAMVGVFSACSRLGALELGNWARGLMDGDEFLSNPVLGTALIDFYAKCGSVAQAKEV 361

Query: 375 FDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGL 434
           F     K+  +++N +IS L   G+   A  +F  MV+  ++PD  T   +L  CTH+GL
Sbjct: 362 FKGMRRKD-CVVFNAVISGLAMCGHVGAAFGVFGQMVKVGMQPDGNTFVGLLCGCTHAGL 420

Query: 435 VQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALH 494
           V +G  YF  M+    + P  EH+ C+++L A+AG   +  + +  MP E +S +W AL 
Sbjct: 421 VDDGHRYFSGMSSVFSVTPTIEHYGCMVDLQARAGLLVEAQDLIRSMPMEANSIVWGALL 480

Query: 495 GVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKK 554
           G CR+H +  +   V+ QLI+  P +S  + LLS+IYSA  +    EK+R  +N++  +K
Sbjct: 481 GGCRLHKDTQLAEHVLKQLIELEPWNSGHYVLLSNIYSASHRWDEAEKIRSSLNQKGMQK 540

Query: 555 EQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQL 590
               SW+E++  VH F V D+ HP+   +Y  LE L
Sbjct: 541 LPGCSWVEVDGVVHEFLVGDTSHPLSHKIYEKLESL 576



 Score =  149 bits (375), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 100/414 (24%), Positives = 191/414 (46%), Gaps = 37/414 (8%)

Query: 117 KNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVL 176
           ++ +  N +L    +    ++A  +F      ++  +NT+I G   + A  + +  Y  +
Sbjct: 33  QDTYLINLLLRSSLHFAATQYATVVFAQTPHPNIFLYNTLIRGMVSNDAFRDAVSVYASM 92

Query: 177 RRFSISCNEFSFAGILTICVKLEE-LKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGE 235
           R+   + + F+F  +L  C +L     +   +H  V+ TGF  +V + + +V  Y+K G 
Sbjct: 93  RQHGFAPDNFTFPFVLKACTRLPHYFHVGLSLHSLVIKTGFDWDVFVKTGLVCLYSKNGF 152

Query: 236 LSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRN 295
           L+DAR++FDE   ++V++WT ++ GY + G        F E                   
Sbjct: 153 LTDARKVFDEIPEKNVVSWTAIICGYIESG-------CFGE------------------- 186

Query: 296 GLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVM 355
                AL LF  ++ + +RP+  T    L AC+ +  L  G+ + G++  +    N  V 
Sbjct: 187 -----ALGLFRGLLEMGLRPDSFTLVRILYACSRVGDLASGRWIDGYMRESGSVGNVFVA 241

Query: 356 SSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSV 415
           +SL+DMY+KCG + + R+VFD    K + + W+ +I     +G  ++A+ +F +M R +V
Sbjct: 242 TSLVDMYAKCGSMEEARRVFDGMVEK-DVVCWSALIQGYASNGMPKEALDVFFEMQRENV 300

Query: 416 KPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLM 475
           +PD   +  + +AC+  G ++ G  +   +      + N      LI+  A+ G   Q  
Sbjct: 301 RPDCYAMVGVFSACSRLGALELG-NWARGLMDGDEFLSNPVLGTALIDFYAKCGSVAQAK 359

Query: 476 NQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLID--QNPQSSATHGLL 527
              + M    D  ++NA+     + G++     V  Q++     P  +   GLL
Sbjct: 360 EVFKGMR-RKDCVVFNAVISGLAMCGHVGAAFGVFGQMVKVGMQPDGNTFVGLL 412



 Score = 99.8 bits (247), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 77/291 (26%), Positives = 131/291 (45%), Gaps = 13/291 (4%)

Query: 268 ESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCAC 327
           + A+ +F + P  N   + TLI G   N   + A+ ++  M      P+  TF   L AC
Sbjct: 52  QYATVVFAQTPHPNIFLYNTLIRGMVSNDAFRDAVSVYASMRQHGFAPDNFTFPFVLKAC 111

Query: 328 ASIVSLKH-GKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSML 386
             +    H G  +H  +I+T F  +  V + L+ +YSK G L D R+VFD    K N + 
Sbjct: 112 TRLPHYFHVGLSLHSLVIKTGFDWDVFVKTGLVCLYSKNGFLTDARKVFDEIPEK-NVVS 170

Query: 387 WNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMT 446
           W  +I    + G   +A+ LF  ++   ++PD  TL  IL AC+  G +  G  + +   
Sbjct: 171 WTAIICGYIESGCFGEALGLFRGLLEMGLRPDSFTLVRILYACSRVGDLASG-RWIDGYM 229

Query: 447 HDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMG 506
            + G + N      L+++ A+ G  ++     + M  E D   W+AL    + + +  M 
Sbjct: 230 RESGSVGNVFVATSLVDMYAKCGSMEEARRVFDGM-VEKDVVCWSAL---IQGYASNGMP 285

Query: 507 RKVVDQLIDQN-----PQSSATHGLLSSIYSALGKGRLVEKVRQLINERQF 552
           ++ +D   +       P   A  G+ S+  S LG   L    R L++  +F
Sbjct: 286 KEALDVFFEMQRENVRPDCYAMVGVFSAC-SRLGALELGNWARGLMDGDEF 335



 Score = 42.4 bits (98), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 27/106 (25%), Positives = 44/106 (41%), Gaps = 1/106 (0%)

Query: 325 CACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENS 384
           C    + SL   KQ H  L+R     +T +++ L+              VF  T +  N 
Sbjct: 8   CFAWGLKSLHQAKQCHCLLLRLGLHQDTYLINLLLRSSLHFAATQYATVVFAQTPHP-NI 66

Query: 385 MLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACT 430
            L+NT+I  +  +     A+ ++  M +    PD  T   +L ACT
Sbjct: 67  FLYNTLIRGMVSNDAFRDAVSVYASMRQHGFAPDNFTFPFVLKACT 112


>gi|359485813|ref|XP_003633340.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 679

 Score =  290 bits (743), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 165/538 (30%), Positives = 276/538 (51%), Gaps = 74/538 (13%)

Query: 54  TLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDK 113
           TL  +++ CA    ++ GK++H  L L        F+   L++MY KCG ++D       
Sbjct: 114 TLPCVIKGCARLGVVQEGKQIH-GLALKIGFGSDVFVQGSLVNMYSKCG-EIDC------ 165

Query: 114 IPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLK-F 172
                                   AR +FD M ++DVV WN++I GYA+ G ++  L+ F
Sbjct: 166 ------------------------ARKVFDGMIDKDVVLWNSLIDGYARCGEIDIALQLF 201

Query: 173 YKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAK 232
            ++  R     + FS+                                   + +VD  +K
Sbjct: 202 EEMPER-----DAFSW-----------------------------------TVLVDGLSK 221

Query: 233 CGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGY 292
           CG++  AR+LFD+   R++++W  M++GY K GD +SA +LF +MP  + V+W  +IAGY
Sbjct: 222 CGKVESARKLFDQMPCRNLVSWNAMINGYMKSGDFDSALELFYQMPIWDLVTWNLMIAGY 281

Query: 293 TRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNT 352
             NG    A+++F  M+ L  RP+  T  S L A + +  L  G+ +H ++ +  F  + 
Sbjct: 282 ELNGQFMDAVKMFFMMLKLGSRPSHATLVSVLSAVSGLAVLGKGRWIHSYMEKNGFELDG 341

Query: 353 IVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVR 412
           I+ +SLI+MY+KCGC+     VF     K+    W  +I  L  HG    A+ LF +M +
Sbjct: 342 ILGTSLIEMYAKCGCIESALTVFRAIQKKKVGH-WTAIIVGLGIHGMANHALALFLEMCK 400

Query: 413 SSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSD 472
           + +KP+ I    +LNAC H+GLV +G  YF+ M ++  I P  EH+ CL+++L +AG  +
Sbjct: 401 TGLKPNAIIFIGVLNACNHAGLVDDGRQYFDMMMNEYKIEPTLEHYGCLVDILCRAGHLE 460

Query: 473 QLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYS 532
           +  N +E MP   +  +W +L G  R HG ID+G     ++I+  P++   + LLS++Y+
Sbjct: 461 EAKNTIENMPISPNKVIWMSLLGGSRNHGKIDIGEYAAQRVIEVAPETIGCYILLSNMYA 520

Query: 533 ALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQL 590
           A G    V  VR+++ +R F+K+   S +E +  +H F V D  HP    +Y+ + ++
Sbjct: 521 ASGMWEKVSHVREMMYKRGFRKDPGCSSVEHKGTLHEFIVGDISHPQTKEIYAKMSEM 578



 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 61/227 (26%), Positives = 102/227 (44%), Gaps = 16/227 (7%)

Query: 337 KQVHGFLIRTNFRSNTIVMSSLIDMYS--KCGCLNDGRQVFDLTDNKENSMLWNTMISAL 394
           +Q+H F ++T   ++  V S L+ +YS  K   L   R +FD    + + + WNT+I   
Sbjct: 30  EQLHAFSLKTAIFNHPFVSSRLLALYSDPKINDLGYARSIFDRI-QRRSLIHWNTIIKCY 88

Query: 395 TQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPN 454
            ++ +    I LFH++V   + PD  TL  ++  C   G+VQEG      +   +G   +
Sbjct: 89  VENQFSHDGIVLFHELVHEYL-PDNFTLPCVIKGCARLGVVQEG-KQIHGLALKIGFGSD 146

Query: 455 QEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNAL-HGVCRIHGNIDMGRKVVDQL 513
                 L+ + ++ G  D      + M  + D  LWN+L  G  R  G ID    +  QL
Sbjct: 147 VFVQGSLVNMYSKCGEIDCARKVFDGM-IDKDVVLWNSLIDGYARC-GEID----IALQL 200

Query: 514 IDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISW 560
            ++ P+  A     + +   L K   VE  R+L +  Q      +SW
Sbjct: 201 FEEMPERDAFS--WTVLVDGLSKCGKVESARKLFD--QMPCRNLVSW 243


>gi|330689867|gb|AEC33263.1| putative pentatricopeptide protein [Triticum aestivum]
          Length = 644

 Score =  290 bits (742), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 178/610 (29%), Positives = 310/610 (50%), Gaps = 27/610 (4%)

Query: 16  PNNCLIQSFLSLISKGQLSEAISSLDLLAQRGIRLPAETL--AFILQQCAESKSLKLGKR 73
           P  C +    + + +  +  +   L L   R +R  + TL  ++ L     + +  +   
Sbjct: 36  PTTCAVP--WNRLLRAHICRSRPDLALALYRRMRALSPTLPNSYTLPLALRAATSPIASA 93

Query: 74  VHLH-LKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKN-LFSYNNMLSGYA- 130
           +H H L L     P   ++  L++ Y + G   +A  VFD +P K    S+N ++S Y+ 
Sbjct: 94  IHAHALHLGLHAHPD--VAGQLLAAYARHGRADEAHHVFDAMPSKRATMSWNTLISAYSV 151

Query: 131 ----NLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEF 186
               N  M   AR      A  D V+W T++  +A+ G     L+ +  + R     N  
Sbjct: 152 CCDPNNAMATFARMAAAGEALPDAVTWTTLLSAHARCGKHPVVLELFGDMHRSGCEGNAE 211

Query: 187 SFAGILTICVKLEELKLT--RQVHGQVLVTGFLSN-VVISSSIVDAYAKCGELSDARRLF 243
           S A  L+ C    +L L   R +HG  +  G +   + +++S+V  Y K G++ DAR +F
Sbjct: 212 SVAVALSACPYAGDLALAKGRAIHGYGVAKGVVRGYLFVTNSLVCMYGKLGKMDDAREVF 271

Query: 244 DETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEK------NPVSWTTLIAGYTRNGL 297
            E   R+ +TW  +++ YA  G  + A  +   M ++      N +SW+ +I G+  +G 
Sbjct: 272 REAGERNTVTWNALITSYAAAGMCDEALNVLVRMEQRGGMVAPNVMSWSAVIGGFASSGD 331

Query: 298 GQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSS 357
            ++ALELF RM    + PN  T ++ L AC   ++++ G++VH   IR+    +++V + 
Sbjct: 332 NERALELFRRMQQQWLSPNVVTLATVLSACTEQLAVRLGREVHADAIRSMVDRHSLVANG 391

Query: 358 LIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKP 417
           LI+MY+KCG + D R VFD   +++  + WN+M++    HG  + A+ +F DM  + V P
Sbjct: 392 LINMYAKCGRVADARTVFDGMKSRD-LVSWNSMLAGYGMHGLCDDALAVFTDMAEAKVDP 450

Query: 418 DKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQ 477
           D +T   +L+AC+H+G V EG   F+ M  +  I P+ EH+ C+++LL +AG   +    
Sbjct: 451 DGVTFVAVLSACSHAGRVSEGRRLFDQMILEHKISPSMEHYTCMVDLLGRAGLLKEASEF 510

Query: 478 LEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKG 537
           +E MP   D  +W AL   CRIHG+  M    + + +     ++  H L++++Y+A G  
Sbjct: 511 IETMPMGADLCVWGALLNSCRIHGDAAMAEATIAKALQAGVVTTGNHTLITNLYAACGMW 570

Query: 538 RLVEKVRQLINERQFKKEQAISWIEIENKVHAF---SVSDSLHPMRDVLYSVLEQLAGQM 594
              ++VR +  E   +K    SW+E++NKV AF   SV  S+    DV + VL+ L  +M
Sbjct: 571 DDSKRVRVMTREAGLRKNPGQSWVEVKNKVFAFMAGSVPPSMPRAEDV-FRVLDDLYREM 629

Query: 595 GEDAPSLDAD 604
            +   +++ D
Sbjct: 630 DDQRRAIEED 639


>gi|302809332|ref|XP_002986359.1| hypothetical protein SELMODRAFT_123910 [Selaginella moellendorffii]
 gi|300145895|gb|EFJ12568.1| hypothetical protein SELMODRAFT_123910 [Selaginella moellendorffii]
          Length = 516

 Score =  290 bits (742), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 152/495 (30%), Positives = 272/495 (54%), Gaps = 22/495 (4%)

Query: 54  TLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDK 113
           T A +L+QC  S++L  GK+VH H+ + +       L + L+ MY KC S  DAR  F++
Sbjct: 26  TYASLLRQCGRSRALWAGKQVHSHM-IARGLDRDKVLGDILVQMYGKCRSLGDARDAFER 84

Query: 114 IPVKNLFS--------YNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGA 165
           +  ++++S        +N++++ YA  G +  AR+LFD M  R + SWN MI GYA    
Sbjct: 85  LAYRDIYSGMTPDVVVHNSLVNLYAKCGRIDDARSLFDGMQVRSLASWNAMIAGYAHLDL 144

Query: 166 VEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSS 225
            +E    ++ +    +  +  +F  +L  C   E +   R +H +V   G  SN+V++++
Sbjct: 145 GDEAFDLFRCIDLEGLGPDMLTFINLLGACSTPEFVDAGRNIHARVAALGLDSNLVLATA 204

Query: 226 IVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSW 285
           ++D YAKCG +  AR +F      D     ++++ YA+ G ++ A   F+ MP ++ VSW
Sbjct: 205 LLDMYAKCGSIEGARSVF--ASMADNKNQNSIINMYARCGSLDEARACFDSMPRRSVVSW 262

Query: 286 TTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIR 345
             L++GY     G+++L+L   M    I PN  TFS    AC+ +  L+ G+  H  ++ 
Sbjct: 263 NVLMSGYVEQQQGEESLKLVRCMDWQGIHPNAFTFSCVATACSLLKDLRAGRAAHSRIVA 322

Query: 346 TNFRSNTIVMSSLIDMYSKCGCLNDGRQVFD----LTDNKENSMLWNTMISALTQHGYDE 401
           + F ++ +V+++L+DMY +CG +   R+ FD        + + + WN M+   + HG   
Sbjct: 323 SGFDTDRVVVTALMDMYGRCGSVEAARRTFDDMRRRCSTRVDVVSWNAMMGLYSHHGQPR 382

Query: 402 QAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACL 461
           +A+ LF +M  +    ++++L ++L+ACTH+GLV + +        + GI+P++EH+AC+
Sbjct: 383 EALELFGEMGLAGEAGNEVSLTLVLHACTHAGLVADAVEALARGV-EAGIVPSREHYACV 441

Query: 462 IELLAQAG---CSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNP 518
           +++LA+AG    ++++MN    MP E     W  L G C +HG+   G      +++  P
Sbjct: 442 VDVLARAGKLEVAEEVMNN---MPVEPGIGAWKCLLGACAVHGDAGRGSSAAQHVVEMQP 498

Query: 519 QSSATHGLLSSIYSA 533
            ++A + LLS+I  A
Sbjct: 499 TNAAPYVLLSNIAKA 513



 Score =  142 bits (359), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 92/299 (30%), Positives = 148/299 (49%), Gaps = 19/299 (6%)

Query: 50  LPAETLAFI--LQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDA 107
           L  + L FI  L  C+  + +  G+ +H  +      +    L+  L+ MY KCGS   A
Sbjct: 160 LGPDMLTFINLLGACSTPEFVDAGRNIHARVAALGLDS-NLVLATALLDMYAKCGSIEGA 218

Query: 108 RKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVE 167
           R VF  +      + N++++ YA  G +  AR  FD+M  R VVSWN ++ GY +    E
Sbjct: 219 RSVFASMADNK--NQNSIINMYARCGSLDEARACFDSMPRRSVVSWNVLMSGYVEQQQGE 276

Query: 168 EGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIV 227
           E LK  + +    I  N F+F+ + T C  L++L+  R  H +++ +GF ++ V+ ++++
Sbjct: 277 ESLKLVRCMDWQGIHPNAFTFSCVATACSLLKDLRAGRAAHSRIVASGFDTDRVVVTALM 336

Query: 228 DAYAKCGELSDARRLFDETDAR-----DVLTWTTMVSGYAKLGDMESASKLFNEM----P 278
           D Y +CG +  ARR FD+   R     DV++W  M+  Y+  G    A +LF EM     
Sbjct: 337 DMYGRCGSVEAARRTFDDMRRRCSTRVDVVSWNAMMGLYSHHGQPREALELFGEMGLAGE 396

Query: 279 EKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGK 337
             N VS T ++   T  GL   A+E   R +   I P++  +     AC   V  + GK
Sbjct: 397 AGNEVSLTLVLHACTHAGLVADAVEALARGVEAGIVPSREHY-----ACVVDVLARAGK 450



 Score = 55.5 bits (132), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 64/301 (21%), Positives = 106/301 (35%), Gaps = 58/301 (19%)

Query: 310 ILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLN 369
           +L   P + T++S L  C    +L  GKQVH  +I      + ++   L+ MY KC  L 
Sbjct: 17  VLEDNPGKATYASLLRQCGRSRALWAGKQVHSHMIARGLDRDKVLGDILVQMYGKCRSLG 76

Query: 370 DGRQVFDLTDNKE------------NSML--------------------------WNTMI 391
           D R  F+    ++            NS++                          WN MI
Sbjct: 77  DARDAFERLAYRDIYSGMTPDVVVHNSLVNLYAKCGRIDDARSLFDGMQVRSLASWNAMI 136

Query: 392 SALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGI 451
           +        ++A  LF  +    + PD +T   +L AC+    V  G     +    LG+
Sbjct: 137 AGYAHLDLGDEAFDLFRCIDLEGLGPDMLTFINLLGACSTPEFVDAGRN-IHARVAALGL 195

Query: 452 IPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVD 511
             N      L+++ A+ G  +   +    M    +      ++  C   G++D  R   D
Sbjct: 196 DSNLVLATALLDMYAKCGSIEGARSVFASMADNKNQNSIINMYARC---GSLDEARACFD 252

Query: 512 QLIDQNPQSS-ATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAF 570
            +    P+ S  +  +L S Y           V Q   E   K  + + W  I      F
Sbjct: 253 SM----PRRSVVSWNVLMSGY-----------VEQQQGEESLKLVRCMDWQGIHPNAFTF 297

Query: 571 S 571
           S
Sbjct: 298 S 298


>gi|124360227|gb|ABN08240.1| Tetratricopeptide-like helical [Medicago truncatula]
          Length = 687

 Score =  290 bits (742), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 168/583 (28%), Positives = 292/583 (50%), Gaps = 37/583 (6%)

Query: 26  SLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKT 85
           +L + G  +EAI     L +RGI+          + CA S      K VH          
Sbjct: 52  ALTTHGLSNEAIKIYSSLQERGIKPDMPVFLAAAKACAVSGDALRVKEVHDDAT------ 105

Query: 86  PTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNM 145
                         +CG             + ++F  N ++  Y     ++ AR +FD++
Sbjct: 106 --------------RCGV------------MSDVFVGNALIHAYGKCKCVEGARRVFDDL 139

Query: 146 AERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTR 205
             RDVVSW ++   Y K G   +G+  ++ +    +  N  + + IL  C +L++LK  +
Sbjct: 140 VVRDVVSWTSLSSCYVKCGFPRKGMDVFREMGWSGVKPNPMTVSSILPACAELKDLKSGK 199

Query: 206 QVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLG 265
           ++HG  +  G + N+ + S++V  YAKC  + +AR +FD    RDV++W  +++ Y K  
Sbjct: 200 EIHGFAVRHGMVVNLFVCSALVSLYAKCLSVREARMVFDLMPHRDVVSWNGVLTAYFKNK 259

Query: 266 DMESASKLFNEMPE----KNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFS 321
           + E    LF +M       +  +W  +I G   NG  ++A+E+F +M  +  +PN+ T S
Sbjct: 260 EYEKGFSLFLKMSRDGVRADEATWNAVIGGCMENGRSEEAVEMFRKMQKMGFKPNEITIS 319

Query: 322 SCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNK 381
           S L AC+   +L+ GK++H ++ R     +    ++L+ MY+KCG LN  R VFD+   K
Sbjct: 320 SILPACSFSENLRMGKEIHCYVFRHWKVGDLTSTTALLYMYAKCGDLNLSRNVFDMMRRK 379

Query: 382 ENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTY 441
           +  + WNTMI A   HG  ++A+ LF  M+ S V+P+ +T   +L+ C+HS LV+EG+  
Sbjct: 380 D-VVAWNTMIIANAMHGNGKEALFLFDKMLLSRVQPNSVTFTGVLSGCSHSRLVEEGVQI 438

Query: 442 FESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHG 501
           F SM  D  + P+  H++C++++ ++AG  ++    ++ MP E  +  W AL   CR++ 
Sbjct: 439 FNSMGRDHLVEPDANHYSCVVDIYSRAGRLNEAYKFIQGMPMEPTASAWGALLAACRVYK 498

Query: 502 NIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWI 561
           N+++ +    +L +  P +   +  L +I           +VR L+ ER   K    SW+
Sbjct: 499 NVELAKISAKKLFEIEPNNPGNYVSLFNILVTAKMWSEASQVRILMKERGITKTPGCSWL 558

Query: 562 EIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQMGEDAPSLDAD 604
           ++ NKVH F V D  +   D +Y+ L++L  +M       D D
Sbjct: 559 QVGNKVHTFVVGDKSNIESDKIYNFLDELVEKMKMAGYKPDTD 601



 Score =  163 bits (412), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 116/452 (25%), Positives = 191/452 (42%), Gaps = 69/452 (15%)

Query: 131 NLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAG 190
           N+G    AR LFDN+ + D  + +T+I      G   E +K Y  L+   I  +   F  
Sbjct: 24  NVGDFNRARQLFDNIPQPDPTTCSTLISALTTHGLSNEAIKIYSSLQERGIKPDMPVFLA 83

Query: 191 ILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARD 250
               C    +    ++VH      G +S+V + ++++ AY KC  +  ARR+FD+   RD
Sbjct: 84  AAKACAVSGDALRVKEVHDDATRCGVMSDVFVGNALIHAYGKCKCVEGARRVFDDLVVRD 143

Query: 251 VLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMI 310
           V++WT++ S Y K                                G  +K +++F  M  
Sbjct: 144 VVSWTSLSSCYVKC-------------------------------GFPRKGMDVFREMGW 172

Query: 311 LRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLND 370
             ++PN  T SS L ACA +  LK GK++HGF +R     N  V S+L+ +Y+KC  + +
Sbjct: 173 SGVKPNPMTVSSILPACAELKDLKSGKEIHGFAVRHGMVVNLFVCSALVSLYAKCLSVRE 232

Query: 371 GRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACT 430
            R VFDL  +++  + WN +++A  ++   E+   LF  M R  V+ D+ T   ++  C 
Sbjct: 233 ARMVFDLMPHRD-VVSWNGVLTAYFKNKEYEKGFSLFLKMSRDGVRADEATWNAVIGGCM 291

Query: 431 HSGLVQEGLTYFESMTHDLGIIPNQ--------------------EHHACLIE------- 463
            +G  +E +  F  M   +G  PN+                    E H  +         
Sbjct: 292 ENGRSEEAVEMFRKM-QKMGFKPNEITISSILPACSFSENLRMGKEIHCYVFRHWKVGDL 350

Query: 464 ------LLAQAGCSD-QLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQ 516
                 L   A C D  L   +  M    D   WN +     +HGN      + D+++  
Sbjct: 351 TSTTALLYMYAKCGDLNLSRNVFDMMRRKDVVAWNTMIIANAMHGNGKEALFLFDKMLLS 410

Query: 517 NPQSSATHGLLSSIYSALGKGRLVEKVRQLIN 548
             Q ++     + + S     RLVE+  Q+ N
Sbjct: 411 RVQPNSV--TFTGVLSGCSHSRLVEEGVQIFN 440


>gi|414869795|tpg|DAA48352.1| TPA: hypothetical protein ZEAMMB73_382586 [Zea mays]
          Length = 687

 Score =  290 bits (742), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 151/480 (31%), Positives = 250/480 (52%), Gaps = 41/480 (8%)

Query: 116 VKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLK-FYK 174
            ++ F  N ++  Y+    +  A+ +FD M  RDVVSWNT +    + G V+     F +
Sbjct: 233 AEDTFVGNALIDAYSKNQGLSDAKKVFDEMTTRDVVSWNTAMAAMVRQGEVDAARSMFDE 292

Query: 175 VLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCG 234
           +  + ++S N                                        +++D YAK G
Sbjct: 293 MPEKDTVSWN----------------------------------------TMLDGYAKAG 312

Query: 235 ELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTR 294
           E   A  LF     R+V++W+T+VS Y K GDME A  +F++MP KN V+WT +++   +
Sbjct: 313 EAEKAFELFQRMPGRNVVSWSTVVSAYCKKGDMEMARVIFDKMPAKNLVTWTIMVSACAQ 372

Query: 295 NGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIV 354
            GL ++A  LFT MM   I  +     S L ACA   SL  GK++H  + +     +T+V
Sbjct: 373 KGLVEEAGRLFTEMMDAAIELDVIAVVSILAACAESGSLALGKRIHRHVRQRKLSRSTLV 432

Query: 355 MSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSS 414
            ++L+DM+ KCGC+N    +FD    +++ + WN +I     HG  E+A+ LF  M +  
Sbjct: 433 CNALMDMFCKCGCVNRADYIFDTEIVEKDLVSWNIIIGGFAMHGPGEKALELFAQMKQQG 492

Query: 415 VKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQL 474
             PD +TL  +L+ACTH GLV+EG  +F +M  D GI P  EH+ C+++LL + G   + 
Sbjct: 493 FHPDAVTLINVLSACTHMGLVEEGRRFFANMETDYGIKPQIEHYGCMVDLLGRGGLIKEA 552

Query: 475 MNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSAL 534
           ++ +++MP+E +  +W +L   CR+H N++     V++L +  P S+  + +LS+IY+  
Sbjct: 553 VDMIKRMPWEPNEVIWGSLLSACRLHKNVEYAELAVNELSNLQPSSAGNYAVLSNIYAEA 612

Query: 535 GKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQM 594
           GK   + K R  +     +K    SWIE+    H F+V D  HP  D +  ++++L+  +
Sbjct: 613 GKWSDMAKARVQMKGTGSQKTAGSSWIELNEAFHEFTVGDRKHPESDQISDMIDRLSSHV 672



 Score = 75.9 bits (185), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 71/253 (28%), Positives = 111/253 (43%), Gaps = 52/253 (20%)

Query: 30  KGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRK-TPTT 88
           KG + EA      +    I L    +  IL  CAES SL LGKR+H H++  QRK + +T
Sbjct: 373 KGLVEEAGRLFTEMMDAAIELDVIAVVSILAACAESGSLALGKRIHRHVR--QRKLSRST 430

Query: 89  FLSNHLISMYFKCGSDVDARKVFD-KIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAE 147
            + N L+ M+ KCG    A  +FD +I  K+L S+N ++ G+A  G  + A  LF  M +
Sbjct: 431 LVCNALMDMFCKCGCVNRADYIFDTEIVEKDLVSWNIIIGGFAMHGPGEKALELFAQMKQ 490

Query: 148 R----DVVSWNTMIIGYAKSGAVEEGLKFYK----------------------------- 174
           +    D V+   ++      G VEEG +F+                              
Sbjct: 491 QGFHPDAVTLINVLSACTHMGLVEEGRRFFANMETDYGIKPQIEHYGCMVDLLGRGGLIK 550

Query: 175 ----VLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSS----- 225
               +++R     NE  +  +L+ C      +L + V    L    LSN+  SS+     
Sbjct: 551 EAVDMIKRMPWEPNEVIWGSLLSAC------RLHKNVEYAELAVNELSNLQPSSAGNYAV 604

Query: 226 IVDAYAKCGELSD 238
           + + YA+ G+ SD
Sbjct: 605 LSNIYAEAGKWSD 617



 Score = 55.5 bits (132), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 67/319 (21%), Positives = 131/319 (41%), Gaps = 39/319 (12%)

Query: 198 LEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTM 257
           L  L+  +++H Q+L  G   +   +S ++ +YA    +   R +F              
Sbjct: 108 LPRLRHVQELHAQLLKQGLHRDPHTASKLIASYALLRRVPACRCVFS------------- 154

Query: 258 VSGYAKLGDMESASKLFNE-MPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPN 316
                      +A  L N   P    +   TL+  Y  N L   AL +F   + LR R  
Sbjct: 155 -----------AAVALPNSPFPSSTTLLTKTLLRAYALNSLPHAALAVFLD-VPLRQR-G 201

Query: 317 QHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFD 376
             T+S  + A A+   L   +  H  +++     +T V ++LID YSK   L+D ++VFD
Sbjct: 202 TFTYSFLIKALAA-AGLTPVRGAHAHVVKLGSAEDTFVGNALIDAYSKNQGLSDAKKVFD 260

Query: 377 LTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQ 436
               + + + WNT ++A+ + G  + A  +F +M       D ++   +L+    +G  +
Sbjct: 261 EMTTR-DVVSWNTAMAAMVRQGEVDAARSMFDEMPEK----DTVSWNTMLDGYAKAGEAE 315

Query: 437 EGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGV 496
           +    F+ M        N    + ++    + G  +      +KMP + +   W  +   
Sbjct: 316 KAFELFQRMPGR-----NVVSWSTVVSAYCKKGDMEMARVIFDKMPAK-NLVTWTIMVSA 369

Query: 497 CRIHGNIDMGRKVVDQLID 515
           C   G ++   ++  +++D
Sbjct: 370 CAQKGLVEEAGRLFTEMMD 388


>gi|356565918|ref|XP_003551183.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g25970-like [Glycine max]
          Length = 703

 Score =  290 bits (742), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 184/653 (28%), Positives = 307/653 (47%), Gaps = 109/653 (16%)

Query: 11  NRKNLPNNCLIQSFLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKL 70
           +R  +  N +I +F    S G L      L  + +      + T   IL+  A    LKL
Sbjct: 56  HRDTVSWNAIISAF---ASSGDLDTTWQLLGAMRRSTHAFDSRTFGSILKGVAYVGKLKL 112

Query: 71  GKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYA 130
           G+++H  + L    +   F  + L+ MY KCG   D   VF  +P +N  S+N +++ Y+
Sbjct: 113 GQQLH-SVMLKVGLSENVFSGSALLDMYAKCGRVDDGYVVFQSMPERNYVSWNTLVASYS 171

Query: 131 NLG----------------------------------------------MMKHARNLFDN 144
            +G                                              ++KH   LF+ 
Sbjct: 172 RVGDCDMAFWVLSCMELEGVEIDDGTVSPLLTLLDNAMFYKLTMQLHCKIVKHGLELFNT 231

Query: 145 M----------------AER---------DVVSWNTMIIGYAKSGAVEEGLKFYKVLRRF 179
           +                AER         D+V+WN+M+  Y      +   K +  ++ F
Sbjct: 232 VCNATITAYSECCSLQDAERVFDGAVLCRDLVTWNSMLGAYLMHEKEDLAFKVFLDMQNF 291

Query: 180 SISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGE--LS 237
               + +++ GI+  C   E     + +HG V+  G  ++V +S++++  Y +  +  + 
Sbjct: 292 GFEPDAYTYTGIVGACSVQEHKTCGKCLHGLVIKRGLDNSVPVSNALISMYIRFNDRCME 351

Query: 238 DARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGL 297
           DA R+F   D +D  TW ++++GY ++G                               L
Sbjct: 352 DALRIFFSMDLKDCCTWNSILAGYVQVG-------------------------------L 380

Query: 298 GQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSS 357
            + AL LF +M  L I  + +TFS+ + +C+ + +L+ G+Q H   ++  F +N+ V SS
Sbjct: 381 SEDALRLFLQMRCLVIEIDHYTFSAVIRSCSDLATLQLGQQFHVLALKVGFDTNSYVGSS 440

Query: 358 LIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKP 417
           LI MYSKCG + D R+ F+ T +K+N+++WN++I    QHG    A+ LF+ M    VK 
Sbjct: 441 LIFMYSKCGIIEDARKSFEAT-SKDNAIVWNSIIFGYAQHGQGNIALDLFYMMKERKVKL 499

Query: 418 DKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQ 477
           D IT   +L AC+H+GLV+EG  + ESM  D GI P QEH+AC I+L  +AG   +    
Sbjct: 500 DHITFVAVLTACSHNGLVEEGCNFIESMESDFGIPPRQEHYACAIDLYGRAGHLKKATAL 559

Query: 478 LEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKG 537
           +E MP+E D+ +   L G CR  G+I++  ++   L++  P+   T+ +LS +Y      
Sbjct: 560 VETMPFEPDAMVLKTLLGACRFCGDIELASQIAKILLELEPEEHCTYVILSEMYGRFKMW 619

Query: 538 RLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQL 590
                V +++ ER  KK    SWIE++N VHAF+  D  HP  + +Y +L+QL
Sbjct: 620 GEKASVTRMMRERGVKKVPGWSWIEVKNNVHAFNAEDHSHPQCEEIYILLQQL 672



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 87/315 (27%), Positives = 148/315 (46%), Gaps = 31/315 (9%)

Query: 116 VKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKV 175
           + + ++ NN+++ YA    +  A  +FD M  RD VSWN +I  +A SG ++   +    
Sbjct: 25  IADPYTANNLITSYAKCTELNSAHQVFDEMPHRDTVSWNAIISAFASSGDLDTTWQLLGA 84

Query: 176 LRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGE 235
           +RR + + +  +F  IL     + +LKL +Q+H  +L  G   NV   S+++D YAKCG 
Sbjct: 85  MRRSTHAFDSRTFGSILKGVAYVGKLKLGQQLHSVMLKVGLSENVFSGSALLDMYAKCGR 144

Query: 236 LSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRN 295
           + D   +F     R+ ++W T+V+ Y+++GD + A  + + M          L      +
Sbjct: 145 VDDGYVVFQSMPERNYVSWNTLVASYSRVGDCDMAFWVLSCME---------LEGVEIDD 195

Query: 296 GLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVM 355
           G     L L    M  ++    H        C  +   KHG ++           NT V 
Sbjct: 196 GTVSPLLTLLDNAMFYKLTMQLH--------CKIV---KHGLELF----------NT-VC 233

Query: 356 SSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSV 415
           ++ I  YS+C  L D  +VFD      + + WN+M+ A   H  ++ A ++F DM     
Sbjct: 234 NATITAYSECCSLQDAERVFDGAVLCRDLVTWNSMLGAYLMHEKEDLAFKVFLDMQNFGF 293

Query: 416 KPDKITLAVILNACT 430
           +PD  T   I+ AC+
Sbjct: 294 EPDAYTYTGIVGACS 308



 Score = 92.4 bits (228), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 63/249 (25%), Positives = 119/249 (47%), Gaps = 43/249 (17%)

Query: 208 HGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDM 267
           H + +  G +++   +++++ +YAKC EL+ A ++FDE   RD ++W  ++S +A  GD+
Sbjct: 16  HCRAIKLGSIADPYTANNLITSYAKCTELNSAHQVFDEMPHRDTVSWNAIISAFASSGDL 75

Query: 268 ESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCAC 327
           ++  +L   M                     +++   F          +  TF S L   
Sbjct: 76  DTTWQLLGAM---------------------RRSTHAF----------DSRTFGSILKGV 104

Query: 328 ASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLW 387
           A +  LK G+Q+H  +++     N    S+L+DMY+KCG ++DG  VF     + N + W
Sbjct: 105 AYVGKLKLGQQLHSVMLKVGLSENVFSGSALLDMYAKCGRVDDGYVVFQSMPER-NYVSW 163

Query: 388 NTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVIL----NAC-------THSGLVQ 436
           NT++++ ++ G  + A  +   M    V+ D  T++ +L    NA         H  +V+
Sbjct: 164 NTLVASYSRVGDCDMAFWVLSCMELEGVEIDDGTVSPLLTLLDNAMFYKLTMQLHCKIVK 223

Query: 437 EGLTYFESM 445
            GL  F ++
Sbjct: 224 HGLELFNTV 232



 Score = 52.4 bits (124), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 44/155 (28%), Positives = 71/155 (45%), Gaps = 3/155 (1%)

Query: 356 SSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSV 415
           ++LI  Y+KC  LN   QVFD   +++ ++ WN +ISA    G  +   +L   M RS+ 
Sbjct: 32  NNLITSYAKCTELNSAHQVFDEMPHRD-TVSWNAIISAFASSGDLDTTWQLLGAMRRSTH 90

Query: 416 KPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLM 475
             D  T   IL    + G ++ G     S+   +G+  N    + L+++ A+ G  D   
Sbjct: 91  AFDSRTFGSILKGVAYVGKLKLG-QQLHSVMLKVGLSENVFSGSALLDMYAKCGRVDDGY 149

Query: 476 NQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVV 510
              + MP E +   WN L       G+ DM   V+
Sbjct: 150 VVFQSMP-ERNYVSWNTLVASYSRVGDCDMAFWVL 183


>gi|218186152|gb|EEC68579.1| hypothetical protein OsI_36919 [Oryza sativa Indica Group]
          Length = 586

 Score =  290 bits (742), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 154/472 (32%), Positives = 262/472 (55%), Gaps = 3/472 (0%)

Query: 125 MLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYK-VLRRFSISC 183
           ++S YA   ++  A +LFD    RD+  +++++   + S + E  L   + +L   ++  
Sbjct: 20  LVSAYAKSRLLPDALHLFDETPRRDIYIYSSLLTAISHSASPELALPILRCMLSADALHP 79

Query: 184 NEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLF 243
           + F  + + ++  +L   +L RQ+H   + + +  + V+ SS+VD Y KCG   D R++F
Sbjct: 80  DHFVISSVASVFARLRSRRLGRQLHAHFVASPYNGDDVVKSSLVDMYCKCGSPDDGRKVF 139

Query: 244 DETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALE 303
           D   A++ + WT +VSGYA  G  E A +LF  MP +N  +WT LI+G    G    A+E
Sbjct: 140 DSMSAKNSVVWTALVSGYASNGRSEEALQLFRSMPGRNLFAWTALISGLVNTGESVGAVE 199

Query: 304 LFTRMMILRIR-PNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMY 362
           LF  M    +R  +    S  + A A + +   G+Q+HG  +R  F SN IV ++LIDMY
Sbjct: 200 LFVEMRRDGVRIDDAFVLSIVIGASADLAAFVLGRQLHGSAMRLGFLSNMIVGNALIDMY 259

Query: 363 SKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITL 422
           SKC  +   R+VF+    + + + W TM+    QHG  E+A+ L+  MV +  KP+++T 
Sbjct: 260 SKCSDILSAREVFEGITFR-DVISWTTMVVGEAQHGRAEEALALYDRMVLAGAKPNEVTF 318

Query: 423 AVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMP 482
             ++ AC+H+GLVQ+G   FESM ++ GI P  +H+ C ++LL+++G   +    +  MP
Sbjct: 319 VGLIYACSHAGLVQKGRQLFESMKNEYGITPRLQHYTCYLDLLSRSGHLLEAEELMTTMP 378

Query: 483 YEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEK 542
           YE D   W AL   C  + + +M  ++ D+L++  P+ S+T+ LLS++Y+  GK   V K
Sbjct: 379 YEPDEATWGALLSACTKYKDAEMCIRISDKLLELRPKDSSTYILLSNVYAVNGKWDSVAK 438

Query: 543 VRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQM 594
           VR+ +   + +KE   SWIE   +   F   +    +R+ +   LE++  +M
Sbjct: 439 VRKCMIGLEIRKEPGYSWIEAGREFRLFHAGEVPLDVREEIMVFLEEMVLEM 490



 Score =  154 bits (388), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 97/349 (27%), Positives = 166/349 (47%), Gaps = 40/349 (11%)

Query: 63  AESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSY 122
           A  +S +LG+++H H   +         S+ L+ MY KCGS  D RKVFD +  KN   +
Sbjct: 92  ARLRSRRLGRQLHAHFVASPYNGDDVVKSS-LVDMYCKCGSPDDGRKVFDSMSAKNSVVW 150

Query: 123 NNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSIS 182
             ++SGYA+ G  + A  LF +M  R++ +W  +I G   +G     ++ +  +RR  + 
Sbjct: 151 TALVSGYASNGRSEEALQLFRSMPGRNLFAWTALISGLVNTGESVGAVELFVEMRRDGVR 210

Query: 183 CNE-FSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARR 241
            ++ F  + ++     L    L RQ+HG  +  GFLSN+++ ++++D Y+KC ++  AR 
Sbjct: 211 IDDAFVLSIVIGASADLAAFVLGRQLHGSAMRLGFLSNMIVGNALIDMYSKCSDILSARE 270

Query: 242 LFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEM----PEKNPVSWTTLIAGYTRNGL 297
           +F+    RDV++WTTMV G A+ G  E A  L++ M     + N V++  LI   +  GL
Sbjct: 271 VFEGITFRDVISWTTMVVGEAQHGRAEEALALYDRMVLAGAKPNEVTFVGLIYACSHAGL 330

Query: 298 GQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSS 357
            QK  +LF  M                            K  +G   R          + 
Sbjct: 331 VQKGRQLFESM----------------------------KNEYGITPRLQH------YTC 356

Query: 358 LIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRL 406
            +D+ S+ G L +  ++      + +   W  ++SA T++   E  IR+
Sbjct: 357 YLDLLSRSGHLLEAEELMTTMPYEPDEATWGALLSACTKYKDAEMCIRI 405



 Score = 95.9 bits (237), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 59/204 (28%), Positives = 96/204 (47%), Gaps = 31/204 (15%)

Query: 207 VHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGD 266
           +H ++L  G   +    +++V AYAK   L DA  LFDET  RD+  ++++++  +    
Sbjct: 1   MHARILKEGLAHHPPNPAALVSAYAKSRLLPDALHLFDETPRRDIYIYSSLLTAISHSAS 60

Query: 267 MESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCA 326
            E A  +   M                   L   AL            P+    SS    
Sbjct: 61  PELALPILRCM-------------------LSADALH-----------PDHFVISSVASV 90

Query: 327 CASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSML 386
            A + S + G+Q+H   + + +  + +V SSL+DMY KCG  +DGR+VFD    K NS++
Sbjct: 91  FARLRSRRLGRQLHAHFVASPYNGDDVVKSSLVDMYCKCGSPDDGRKVFDSMSAK-NSVV 149

Query: 387 WNTMISALTQHGYDEQAIRLFHDM 410
           W  ++S    +G  E+A++LF  M
Sbjct: 150 WTALVSGYASNGRSEEALQLFRSM 173


>gi|225449798|ref|XP_002272111.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Vitis vinifera]
          Length = 849

 Score =  290 bits (742), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 169/632 (26%), Positives = 297/632 (46%), Gaps = 103/632 (16%)

Query: 33  LSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSN 92
           L +A+S    +   G+R       ++L+ C ++  L+ GK +H  L           + N
Sbjct: 156 LDDAVSFFCRMRYDGVRPVVYNFTYLLKVCGDNADLRKGKEIHCQL-----------IVN 204

Query: 93  HLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVS 152
              S                     N+F+   +++ YA   +++ A  +FD M ERD+V 
Sbjct: 205 GFAS---------------------NVFAMTGVVNMYAKCRLVEEAYKMFDRMPERDLVC 243

Query: 153 WNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVL 212
           WNT+I GYA++G  +  L+    ++      +  +   IL     +  L++ R +HG  +
Sbjct: 244 WNTIISGYAQNGFGKTALELVLRMQEEGKRPDSITIVSILPAVADVGSLRIGRSIHGYSM 303

Query: 213 VTGFLS-------------------------------NVVISSSIVDAYAK--------- 232
             GF S                                VV  +S++D Y +         
Sbjct: 304 RAGFESFVNVSTALVDMYSKCGSVGTARLIFDRMTGKTVVSWNSMIDGYVQNGDPGAAME 363

Query: 233 -----------------------CGELSDAR------RLFDETD-ARDVLTWTTMVSGYA 262
                                  C +L D        +L D+ +   DV    +++S Y+
Sbjct: 364 IFQKMMDEQVEMTNVTVMGALHACADLGDVEQGRFVHKLLDQLELGSDVSVMNSLISMYS 423

Query: 263 KLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSS 322
           K   ++ A+++F  +  K  VSW  +I GY +NG   +A++ F +M +  I+P+  T  S
Sbjct: 424 KCKRVDIAAEIFENLQHKTLVSWNAMILGYAQNGRINEAIDYFCKMQLQNIKPDSFTMVS 483

Query: 323 CLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKE 382
            + A A +  L   K +HG +IRT    N  V ++L+DMY+KCG ++  R++FD+ D + 
Sbjct: 484 VIPALAELSVLPQAKWIHGLVIRTCLDKNVFVATALVDMYAKCGAVHTARKLFDMMDERH 543

Query: 383 NSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYF 442
            +  WN MI     HG  + A+ LF  M +  +KP+++T   +L+AC+HSGLV+EG  YF
Sbjct: 544 VTT-WNAMIDGYGTHGLGKAALELFEKMKKEVIKPNEVTFLCVLSACSHSGLVEEGFQYF 602

Query: 443 ESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGN 502
            SM  D G+ P  +H+  +++LL +A   ++  + ++KMP E    ++ A+ G CRIH N
Sbjct: 603 GSMKKDYGLEPAMDHYGAMVDLLGRANRLNEAWDFIQKMPIEPAISVFGAMLGACRIHKN 662

Query: 503 IDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIE 562
           +++G K  +++ D +P     H LL++IY+       V +VR  + ++  +K    S +E
Sbjct: 663 VELGEKAANRIFDLDPDDGGYHVLLANIYATASMWDKVARVRTTMEKKGIQKTPGWSVVE 722

Query: 563 IENKVHAFSVSDSLHPMRDVLYSVLEQLAGQM 594
           ++N+VH F    + HP    +Y+ LE L  ++
Sbjct: 723 LQNEVHTFYSGTTSHPQAKKIYAFLETLGNRI 754



 Score =  167 bits (423), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 93/314 (29%), Positives = 162/314 (51%), Gaps = 32/314 (10%)

Query: 125 MLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCN 184
           ++S +   G +  A  +F  + ++    ++TM+ GYA++ ++++ + F+  +R   +   
Sbjct: 115 LVSLFCKFGSLHEAARVFQPIEDKIDELYHTMLKGYARNSSLDDAVSFFCRMRYDGVRPV 174

Query: 185 EFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFD 244
            ++F  +L +C    +L+  +++H Q++V GF SNV   + +V+ YAKC  + +A ++FD
Sbjct: 175 VYNFTYLLKVCGDNADLRKGKEIHCQLIVNGFASNVFAMTGVVNMYAKCRLVEEAYKMFD 234

Query: 245 ETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALEL 304
               RD++ W T++SGYA+                               NG G+ ALEL
Sbjct: 235 RMPERDLVCWNTIISGYAQ-------------------------------NGFGKTALEL 263

Query: 305 FTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSK 364
             RM     RP+  T  S L A A + SL+ G+ +HG+ +R  F S   V ++L+DMYSK
Sbjct: 264 VLRMQEEGKRPDSITIVSILPAVADVGSLRIGRSIHGYSMRAGFESFVNVSTALVDMYSK 323

Query: 365 CGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAV 424
           CG +   R +FD    K   + WN+MI    Q+G    A+ +F  M+   V+   +T+  
Sbjct: 324 CGSVGTARLIFDRMTGK-TVVSWNSMIDGYVQNGDPGAAMEIFQKMMDEQVEMTNVTVMG 382

Query: 425 ILNACTHSGLVQEG 438
            L+AC   G V++G
Sbjct: 383 ALHACADLGDVEQG 396



 Score =  108 bits (270), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 57/184 (30%), Positives = 96/184 (52%), Gaps = 1/184 (0%)

Query: 255 TTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIR 314
           T +VS + K G +  A+++F  + +K    + T++ GY RN     A+  F RM    +R
Sbjct: 113 TKLVSLFCKFGSLHEAARVFQPIEDKIDELYHTMLKGYARNSSLDDAVSFFCRMRYDGVR 172

Query: 315 PNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQV 374
           P  + F+  L  C     L+ GK++H  LI   F SN   M+ +++MY+KC  + +  ++
Sbjct: 173 PVVYNFTYLLKVCGDNADLRKGKEIHCQLIVNGFASNVFAMTGVVNMYAKCRLVEEAYKM 232

Query: 375 FDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGL 434
           FD    ++  + WNT+IS   Q+G+ + A+ L   M     +PD IT+  IL A    G 
Sbjct: 233 FDRMPERD-LVCWNTIISGYAQNGFGKTALELVLRMQEEGKRPDSITIVSILPAVADVGS 291

Query: 435 VQEG 438
           ++ G
Sbjct: 292 LRIG 295



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 42/158 (26%), Positives = 81/158 (51%), Gaps = 5/158 (3%)

Query: 25  LSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRK 84
           L     G+++EAI     +  + I+  + T+  ++   AE   L   K +H  L +    
Sbjct: 451 LGYAQNGRINEAIDYFCKMQLQNIKPDSFTMVSVIPALAELSVLPQAKWIH-GLVIRTCL 509

Query: 85  TPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDN 144
               F++  L+ MY KCG+   ARK+FD +  +++ ++N M+ GY   G+ K A  LF+ 
Sbjct: 510 DKNVFVATALVDMYAKCGAVHTARKLFDMMDERHVTTWNAMIDGYGTHGLGKAALELFEK 569

Query: 145 MAERDV----VSWNTMIIGYAKSGAVEEGLKFYKVLRR 178
           M +  +    V++  ++   + SG VEEG +++  +++
Sbjct: 570 MKKEVIKPNEVTFLCVLSACSHSGLVEEGFQYFGSMKK 607


>gi|90657651|gb|ABD96949.1| hypothetical protein [Cleome spinosa]
          Length = 639

 Score =  290 bits (742), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 168/500 (33%), Positives = 272/500 (54%), Gaps = 10/500 (2%)

Query: 102 GSDVDARKVFDKIPVKNLFSY---NNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMII 158
           G  V+  KV   + VK+ F     N+++  Y  LG M+ A+ +FD + ERDVVSWN +I 
Sbjct: 130 GKVVEGEKVHGYV-VKSGFDACVCNSVMGMYGALGKMEVAKKVFDEIPERDVVSWNVLIS 188

Query: 159 GYAKSGAVEEGLKFYKVLRRFS-ISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFL 217
            Y      E+ +  ++ +RR S +  +E +    L+ C  L   ++  ++H  V     +
Sbjct: 189 SYVGHRKFEDAIAVFRRMRRESNLKADEATVVSTLSACSVLRNQEVGEEIHRYVDAELEM 248

Query: 218 SNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEM 277
           +   I ++++D Y KCG +  AR +FDE   ++V+ WT+MVSGYA  G ++ A +LF   
Sbjct: 249 TTK-IGNALLDMYCKCGCVDKARAIFDEMGNKNVICWTSMVSGYASNGSLDEARELFERS 307

Query: 278 PEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGK 337
           P ++ V WT +I GY +  L  +AL+LF +M I R+RP+     + L  CA   +L+ GK
Sbjct: 308 PVRDIVLWTAMINGYVQFNLFDEALKLFRKMQIQRLRPDNFILVTLLKGCAQTGALEQGK 367

Query: 338 QVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQH 397
            +HG++   +   + +V ++L+D+Y+KCGC+    +VF     ++ +  W ++I  L  +
Sbjct: 368 WLHGYIHENSITLDRVVGTALVDVYAKCGCVEKALEVFYEMKERDTAS-WTSVIYGLAVN 426

Query: 398 GYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEH 457
           G   +A+  F  M  +  +PD IT   +L AC H GLV+EG  YF+SMT    I P  EH
Sbjct: 427 GMTSKALDFFSQMEEAGFRPDDITFIGVLTACNHGGLVEEGRRYFDSMTKTYKIQPKSEH 486

Query: 458 HACLIELLAQAGCSDQLMNQLEKMPYEHDSY---LWNALHGVCRIHGNIDMGRKVVDQLI 514
           ++CLI+LL +AG  D+    LE +P E       L+ +L   CR +GN+ M  +V  +L 
Sbjct: 487 YSCLIDLLCRAGLLDEAELLLEMIPIESSDIVVPLYCSLLSACRNYGNLKMSERVGRRLE 546

Query: 515 DQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSD 574
               + S+ H LL+S+Y++  +   V  VR+ + E   +K    S IE+   +H F V  
Sbjct: 547 RVEVKDSSVHTLLASVYASANRWEDVTTVRRKMKELGIRKFPGCSSIEVNGVLHEFMVGG 606

Query: 575 SLHPMRDVLYSVLEQLAGQM 594
             H   D ++SVL Q+   M
Sbjct: 607 PSHMEMDDIHSVLGQVTKWM 626



 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 107/439 (24%), Positives = 201/439 (45%), Gaps = 43/439 (9%)

Query: 18  NCLIQSFLSLISKGQLSEAISSLDLLAQRG-IRLPAETLAFILQQCAESKSLKLGKRVHL 76
           N LI S+   +   +  +AI+    + +   ++    T+   L  C+  ++ ++G+ +H 
Sbjct: 184 NVLISSY---VGHRKFEDAIAVFRRMRRESNLKADEATVVSTLSACSVLRNQEVGEEIHR 240

Query: 77  HLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMK 136
           ++      T  T + N L+ MY KCG    AR +FD++  KN+  + +M+SGYA+ G + 
Sbjct: 241 YVDAELEMT--TKIGNALLDMYCKCGCVDKARAIFDEMGNKNVICWTSMVSGYASNGSLD 298

Query: 137 HARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICV 196
            AR LF+    RD+V W  MI GY +    +E LK ++ ++   +  + F    +L  C 
Sbjct: 299 EARELFERSPVRDIVLWTAMINGYVQFNLFDEALKLFRKMQIQRLRPDNFILVTLLKGCA 358

Query: 197 KLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTT 256
           +   L+  + +HG +       + V+ +++VD YAKCG +  A  +F E   RD  +WT+
Sbjct: 359 QTGALEQGKWLHGYIHENSITLDRVVGTALVDVYAKCGCVEKALEVFYEMKERDTASWTS 418

Query: 257 MVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPN 316
           ++ G A                                NG+  KAL+ F++M     RP+
Sbjct: 419 VIYGLAV-------------------------------NGMTSKALDFFSQMEEAGFRPD 447

Query: 317 QHTFSSCLCACASIVSLKHGKQVHGFLIRT-NFRSNTIVMSSLIDMYSKCGCLNDGRQVF 375
             TF   L AC     ++ G++    + +T   +  +   S LID+  + G L++   + 
Sbjct: 448 DITFIGVLTACNHGGLVEEGRRYFDSMTKTYKIQPKSEHYSCLIDLLCRAGLLDEAELLL 507

Query: 376 DLTDNKENSM---LWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHS 432
           ++   + + +   L+ +++SA   +G  + + R+   + R  VK   +    +L +   S
Sbjct: 508 EMIPIESSDIVVPLYCSLLSACRNYGNLKMSERVGRRLERVEVKDSSV--HTLLASVYAS 565

Query: 433 GLVQEGLTYFESMTHDLGI 451
               E +T       +LGI
Sbjct: 566 ANRWEDVTTVRRKMKELGI 584



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 94/448 (20%), Positives = 189/448 (42%), Gaps = 71/448 (15%)

Query: 133 GMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGIL 192
           G +++A  +   +    +V +N MI   AK     + L  +  LR+  ++ + F+   + 
Sbjct: 64  GSIRYAERVLGFVQSPCLVMYNLMIKAVAKDENFRKVLVLFSELRKQGLNPDNFTLPPVF 123

Query: 193 TICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVL 252
                L ++    +VHG V+ +GF  +  + +S++  Y   G++  A+++FDE   RDV+
Sbjct: 124 KAMGCLGKVVEGEKVHGYVVKSGF--DACVCNSVMGMYGALGKMEVAKKVFDEIPERDVV 181

Query: 253 TWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILR 312
           +W  ++S Y      E A  +F  M  ++                               
Sbjct: 182 SWNVLISSYVGHRKFEDAIAVFRRMRRES------------------------------N 211

Query: 313 IRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGR 372
           ++ ++ T  S L AC+ + + + G+++H + +       T + ++L+DMY KCGC++  R
Sbjct: 212 LKADEATVVSTLSACSVLRNQEVGEEIHRY-VDAELEMTTKIGNALLDMYCKCGCVDKAR 270

Query: 373 QVFDLTDNK------------------------------ENSMLWNTMISALTQHGYDEQ 402
            +FD   NK                               + +LW  MI+   Q    ++
Sbjct: 271 AIFDEMGNKNVICWTSMVSGYASNGSLDEARELFERSPVRDIVLWTAMINGYVQFNLFDE 330

Query: 403 AIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLI 462
           A++LF  M    ++PD   L  +L  C  +G +++G  +     H+  I  ++     L+
Sbjct: 331 ALKLFRKMQIQRLRPDNFILVTLLKGCAQTGALEQG-KWLHGYIHENSITLDRVVGTALV 389

Query: 463 ELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQN--PQS 520
           ++ A+ GC ++ +    +M  E D+  W ++     ++G          Q+ +    P  
Sbjct: 390 DVYAKCGCVEKALEVFYEMK-ERDTASWTSVIYGLAVNGMTSKALDFFSQMEEAGFRPDD 448

Query: 521 SATHGLLSSIYSALGKGRLVEKVRQLIN 548
               G+L    +A   G LVE+ R+  +
Sbjct: 449 ITFIGVL----TACNHGGLVEEGRRYFD 472



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 62/279 (22%), Positives = 127/279 (45%), Gaps = 23/279 (8%)

Query: 247 DARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFT 306
           D  D LT   +       G +  A ++   +     V +  +I    ++   +K L LF+
Sbjct: 46  DNMDTLTKIVLFCTDPSRGSIRYAERVLGFVQSPCLVMYNLMIKAVAKDENFRKVLVLFS 105

Query: 307 RMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCG 366
            +    + P+  T      A   +  +  G++VHG+++++ F  +  V +S++ MY   G
Sbjct: 106 ELRKQGLNPDNFTLPPVFKAMGCLGKVVEGEKVHGYVVKSGF--DACVCNSVMGMYGALG 163

Query: 367 CLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVR-SSVKPDKITLAVI 425
            +   ++VFD    + + + WN +IS+   H   E AI +F  M R S++K D+ T+   
Sbjct: 164 KMEVAKKVFDEIPER-DVVSWNVLISSYVGHRKFEDAIAVFRRMRRESNLKADEATVVST 222

Query: 426 LNACT---HSGLVQEGLTYFES---MTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLE 479
           L+AC+   +  + +E   Y ++   MT  +G          L+++  + GC D+     +
Sbjct: 223 LSACSVLRNQEVGEEIHRYVDAELEMTTKIG--------NALLDMYCKCGCVDKARAIFD 274

Query: 480 KMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNP 518
           +M    +   W ++      +G++D  R    +L +++P
Sbjct: 275 EMG-NKNVICWTSMVSGYASNGSLDEAR----ELFERSP 308


>gi|356503988|ref|XP_003520781.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Glycine max]
          Length = 771

 Score =  290 bits (742), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 172/557 (30%), Positives = 280/557 (50%), Gaps = 68/557 (12%)

Query: 35  EAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVH-LHLKLTQRKTPTTFLSNH 93
           +A++  + +   GI     T + IL  CA +  L  G+++H L  K      P  F++  
Sbjct: 183 QALTFFNRMRTTGIYPNHFTFSAILPACAHAALLSEGQQIHALIHKHCFLNDP--FVATA 240

Query: 94  LISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSW 153
           L+ MY KCGS                               M  A N+FD M  R++VSW
Sbjct: 241 LLDMYAKCGS-------------------------------MLLAENVFDEMPHRNLVSW 269

Query: 154 NTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLV 213
           N+MI+G+ K+      +  ++ +   S+  ++ S + +L+ C  L EL   +QVHG ++ 
Sbjct: 270 NSMIVGFVKNKLYGRAIGVFREV--LSLGPDQVSISSVLSACAGLVELDFGKQVHGSIVK 327

Query: 214 TGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKL 273
            G +  V + +S+VD Y KCG       LF                        E A+KL
Sbjct: 328 RGLVGLVYVKNSLVDMYCKCG-------LF------------------------EDATKL 356

Query: 274 FNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSL 333
           F    +++ V+W  +I G  R    ++A   F  M+   + P++ ++SS   A ASI +L
Sbjct: 357 FCGGGDRDVVTWNVMIMGCFRCRNFEQACTYFQAMIREGVEPDEASYSSLFHASASIAAL 416

Query: 334 KHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISA 393
             G  +H  +++T    N+ + SSL+ MY KCG + D  QVF  T  + N + W  MI+ 
Sbjct: 417 TQGTMIHSHVLKTGHVKNSRISSSLVTMYGKCGSMLDAYQVFRETK-EHNVVCWTAMITV 475

Query: 394 LTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIP 453
             QHG   +AI+LF +M+   V P+ IT   +L+AC+H+G + +G  YF SM +   I P
Sbjct: 476 FHQHGCANEAIKLFEEMLNEGVVPEYITFVSVLSACSHTGKIDDGFKYFNSMANVHNIKP 535

Query: 454 NQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQL 513
             EH+AC+++LL + G  ++    +E MP+E DS +W AL G C  H N++MGR+V ++L
Sbjct: 536 GLEHYACMVDLLGRVGRLEEACRFIESMPFEPDSLVWGALLGACGKHANVEMGREVAERL 595

Query: 514 IDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVS 573
               P +   + LLS+IY   G     ++VR+L+     +KE   SWI+++N+   F+ +
Sbjct: 596 FKLEPDNPGNYMLLSNIYIRHGMLEEADEVRRLMGINGVRKESGCSWIDVKNRTFVFNAN 655

Query: 574 DSLHPMRDVLYSVLEQL 590
           D  H     +Y +L++L
Sbjct: 656 DRSHSRTQEIYGMLQKL 672


>gi|115462637|ref|NP_001054918.1| Os05g0212100 [Oryza sativa Japonica Group]
 gi|48475165|gb|AAT44234.1| unknown protein, contains PPR repeat [Oryza sativa Japonica Group]
 gi|113578469|dbj|BAF16832.1| Os05g0212100 [Oryza sativa Japonica Group]
 gi|215695208|dbj|BAG90399.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|222630605|gb|EEE62737.1| hypothetical protein OsJ_17540 [Oryza sativa Japonica Group]
          Length = 822

 Score =  290 bits (742), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 159/526 (30%), Positives = 270/526 (51%), Gaps = 65/526 (12%)

Query: 133 GMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGIL 192
           G +  AR +FD + E+ VV W  +I  Y +    EE ++ +          + ++ + ++
Sbjct: 202 GDLASARKVFDGLIEKTVVVWTLLISRYVQGECAEEAVEIFLDFLEDGFEPDRYTMSSMI 261

Query: 193 TICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCG---ELSDARRLFDETDAR 249
           + C +L  ++L  Q+H   L  GF S+  +S  +VD YAK      +  A ++F+     
Sbjct: 262 SACTELGSVRLGLQLHSLALRMGFASDACVSCGLVDMYAKSNIEQAMDYANKVFERMRKN 321

Query: 250 DVLTWTTMVSGYAKLGDMESA-----SKLFNEMPEKNPVSWTT----------------- 287
           DV++WT ++SGY + G  E+       ++ NE  + N +++++                 
Sbjct: 322 DVISWTALISGYVQSGVQENKVMVLFGEMLNESIKPNHITYSSILKACANISDHDSGRQV 381

Query: 288 ------------------LIAGYTRNGLGQKAL----ELFTRMMIL-----RIRPNQH-- 318
                             L++ Y  +G  ++A     +L+ R MI      R  P  H  
Sbjct: 382 HAHVIKSNQAAAHTVGNALVSMYAESGCMEEARRVFNQLYERSMISCITEGRDAPLDHRI 441

Query: 319 ----------TFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCL 368
                     TF+S + A AS+  L  G+Q+H   ++  F S+  V +SL+ MYS+CG L
Sbjct: 442 GRMDMGISSSTFASLISAAASVGMLTKGQQLHAMTLKAGFGSDRFVSNSLVSMYSRCGYL 501

Query: 369 NDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNA 428
            D  + F+   ++ N + W +MIS L +HGY E+A+ LFHDM+ + VKP+ +T   +L+A
Sbjct: 502 EDACRSFNELKDR-NVISWTSMISGLAKHGYAERALSLFHDMILTGVKPNDVTYIAVLSA 560

Query: 429 CTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSY 488
           C+H GLV+EG  YF SM  D G+IP  EH+AC+++LLA++G   + +  + +MP + D+ 
Sbjct: 561 CSHVGLVREGKEYFRSMQRDHGLIPRMEHYACMVDLLARSGLVKEALEFINEMPLKADAL 620

Query: 489 LWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLIN 548
           +W  L G CR H NI++G      +I+  P+  A + LLS++Y+  G    V ++R  + 
Sbjct: 621 VWKTLLGACRSHDNIEVGEIAAKNVIELEPRDPAPYVLLSNLYADAGLWDEVARIRSAMR 680

Query: 549 ERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQM 594
           +    KE  +SW+E+EN  H F   D+ HP    +Y  L+ L G++
Sbjct: 681 DNNLNKETGLSWMEVENTTHEFRAGDTSHPRAQDIYGKLDTLVGEI 726



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 100/373 (26%), Positives = 168/373 (45%), Gaps = 57/373 (15%)

Query: 123 NNMLSGYANLGMMKHARNLFDNM-AERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSI 181
           N++L+ Y+  G +  ARN+FD M   RD+VSW  M    A++GA  E L     +    +
Sbjct: 88  NSLLTLYSRCGAVASARNVFDGMRGLRDIVSWTAMASCLARNGAERESLLLIGEMLESGL 147

Query: 182 SCNEFSFAGILTICVKLE-----ELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGEL 236
             N ++   +   C   E        +   VH   L   + +++ + S+++D  A+ G  
Sbjct: 148 LPNAYTLCAVAHACFPHELYCLVGGVVLGLVHKMGL---WGTDIAVGSALIDMLARNG-- 202

Query: 237 SDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNG 296
                                        D+ SA K+F+ + EK  V WT LI+ Y +  
Sbjct: 203 -----------------------------DLASARKVFDGLIEKTVVVWTLLISRYVQGE 233

Query: 297 LGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMS 356
             ++A+E+F   +     P+++T SS + AC  + S++ G Q+H   +R  F S+  V  
Sbjct: 234 CAEEAVEIFLDFLEDGFEPDRYTMSSMISACTELGSVRLGLQLHSLALRMGFASDACVSC 293

Query: 357 SLIDMYSKCG---CLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIR-LFHDMVR 412
            L+DMY+K      ++   +VF+    K + + W  +IS   Q G  E  +  LF +M+ 
Sbjct: 294 GLVDMYAKSNIEQAMDYANKVFERM-RKNDVISWTALISGYVQSGVQENKVMVLFGEMLN 352

Query: 413 SSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQ-EHHA---CLIELLAQA 468
            S+KP+ IT + IL AC +      G        H   I  NQ   H     L+ + A++
Sbjct: 353 ESIKPNHITYSSILKACANISDHDSG-----RQVHAHVIKSNQAAAHTVGNALVSMYAES 407

Query: 469 GCSDQ---LMNQL 478
           GC ++   + NQL
Sbjct: 408 GCMEEARRVFNQL 420



 Score =  112 bits (281), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 99/431 (22%), Positives = 184/431 (42%), Gaps = 114/431 (26%)

Query: 40  LDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYF 99
           LD L + G      T++ ++  C E  S++LG ++H  L L         +S  L+ MY 
Sbjct: 243 LDFL-EDGFEPDRYTMSSMISACTELGSVRLGLQLH-SLALRMGFASDACVSCGLVDMYA 300

Query: 100 KCGSDVD-----ARKVFDKIPVKNLFSYNNMLSGYANLG--------------------- 133
           K  S+++     A KVF+++   ++ S+  ++SGY   G                     
Sbjct: 301 K--SNIEQAMDYANKVFERMRKNDVISWTALISGYVQSGVQENKVMVLFGEMLNESIKPN 358

Query: 134 ------MMKHARNLFDNMAERDV-------------VSWNTMIIGYAKSGAVEEGLK-FY 173
                 ++K   N+ D+ + R V                N ++  YA+SG +EE  + F 
Sbjct: 359 HITYSSILKACANISDHDSGRQVHAHVIKSNQAAAHTVGNALVSMYAESGCMEEARRVFN 418

Query: 174 KVLRRFSISC--------------------NEFSFAGILTICVKLEELKLTRQVHGQVLV 213
           ++  R  ISC                    +  +FA +++    +  L   +Q+H   L 
Sbjct: 419 QLYERSMISCITEGRDAPLDHRIGRMDMGISSSTFASLISAAASVGMLTKGQQLHAMTLK 478

Query: 214 TGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKL 273
            GF S+  +S+S+V  Y++CG L DA R F+E   R+V++WT+M+SG AK          
Sbjct: 479 AGFGSDRFVSNSLVSMYSRCGYLEDACRSFNELKDRNVISWTSMISGLAK---------- 528

Query: 274 FNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSL 333
                                +G  ++AL LF  M++  ++PN  T+ + L AC+ +  +
Sbjct: 529 ---------------------HGYAERALSLFHDMILTGVKPNDVTYIAVLSACSHVGLV 567

Query: 334 KHGKQV-------HGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSML 386
           + GK+        HG + R          + ++D+ ++ G + +  +  +    K ++++
Sbjct: 568 REGKEYFRSMQRDHGLIPRMEH------YACMVDLLARSGLVKEALEFINEMPLKADALV 621

Query: 387 WNTMISALTQH 397
           W T++ A   H
Sbjct: 622 WKTLLGACRSH 632



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 68/303 (22%), Positives = 129/303 (42%), Gaps = 52/303 (17%)

Query: 17  NNCLIQSFLSLISKGQ---LSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKR 73
           N    +S +S I++G+   L   I  +D+    GI   + T A ++   A    L  G++
Sbjct: 418 NQLYERSMISCITEGRDAPLDHRIGRMDM----GI--SSSTFASLISAAASVGMLTKGQQ 471

Query: 74  VHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLG 133
           +H  + L        F+SN L+SMY +CG   DA + F+++  +N+ S+ +M+SG A  G
Sbjct: 472 LHA-MTLKAGFGSDRFVSNSLVSMYSRCGYLEDACRSFNELKDRNVISWTSMISGLAKHG 530

Query: 134 MMKHARNLFDNMAERDV----VSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFA 189
             + A +LF +M    V    V++  ++   +  G V EG ++++ ++R           
Sbjct: 531 YAERALSLFHDMILTGVKPNDVTYIAVLSACSHVGLVREGKEYFRSMQRDH--------- 581

Query: 190 GILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDAR 249
                                    G +  +   + +VD  A+ G + +A    +E   +
Sbjct: 582 -------------------------GLIPRMEHYACMVDLLARSGLVKEALEFINEMPLK 616

Query: 250 -DVLTWTTMVSGYAKLGDMES---ASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELF 305
            D L W T++       ++E    A+K   E+  ++P  +  L   Y   GL  +   + 
Sbjct: 617 ADALVWKTLLGACRSHDNIEVGEIAAKNVIELEPRDPAPYVLLSNLYADAGLWDEVARIR 676

Query: 306 TRM 308
           + M
Sbjct: 677 SAM 679


>gi|356519383|ref|XP_003528352.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31430-like [Glycine max]
          Length = 614

 Score =  290 bits (742), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 174/592 (29%), Positives = 297/592 (50%), Gaps = 50/592 (8%)

Query: 4   NFSPRGINRKNLPN----NCLIQSFLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFIL 59
           N++ R  N  + P+    N +I++F   +  G    AIS    L + G+     T  ++L
Sbjct: 59  NYANRIFNYIHDPSLFIYNLMIKAF---VKSGSFRSAISLFQQLREHGVWPDNYTYPYVL 115

Query: 60  QQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNL 119
           +       ++ G++VH                    +   K G + D             
Sbjct: 116 KGIGCIGEVREGEKVH--------------------AFVVKTGLEFDP------------ 143

Query: 120 FSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRF 179
           +  N+ +  YA LG+++    +F+ M +RD VSWN MI GY +    EE +  Y+  R +
Sbjct: 144 YVCNSFMDMYAELGLVEGFTQVFEEMPDRDAVSWNIMISGYVRCKRFEEAVDVYR--RMW 201

Query: 180 SIS---CNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGEL 236
           + S    NE +    L+ C  L  L+L +++H  +     L+ + + ++++D Y KCG +
Sbjct: 202 TESNEKPNEATVVSTLSACAVLRNLELGKEIHDYIASELDLTTI-MGNALLDMYCKCGHV 260

Query: 237 SDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNG 296
           S AR +FD    ++V  WT+MV+GY   G ++ A  LF   P ++ V WT +I GY +  
Sbjct: 261 SVAREIFDAMTVKNVNCWTSMVTGYVICGQLDQARNLFERSPSRDIVLWTAMINGYVQFN 320

Query: 297 LGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMS 356
             ++ + LF  M I  ++P++    + L  CA   +L+ GK +H ++     + + +V +
Sbjct: 321 RFEETIALFGEMQIRGVKPDKFIVVTLLTGCAQSGALEQGKWIHNYIDENRIKVDAVVGT 380

Query: 357 SLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVK 416
           +LI+MY+KCGC+    ++F+    K+ +  W ++I  L  +G   +A+ LF  M    +K
Sbjct: 381 ALIEMYAKCGCIEKSFEIFNGLKEKDTTS-WTSIICGLAMNGKPSEALELFKAMQTCGLK 439

Query: 417 PDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMN 476
           PD IT   +L+AC+H+GLV+EG   F SM+    I PN EH+ C I+LL +AG   +   
Sbjct: 440 PDDITFVAVLSACSHAGLVEEGRKLFHSMSSMYHIEPNLEHYGCFIDLLGRAGLLQEAEE 499

Query: 477 QLEKMPYEHDSY---LWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSA 533
            ++K+P +++     L+ AL   CR +GNIDMG ++   L       S+ H LL+SIY++
Sbjct: 500 LVKKLPAQNNEIIVPLYGALLSACRTYGNIDMGERLATALAKVKSSDSSLHTLLASIYAS 559

Query: 534 LGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYS 585
             +   V KVR  + +   KK    S IE++ K     +S+   P  D  +S
Sbjct: 560 ADRWEDVRKVRNKMKDLGIKKVPGYSAIEVDGKWQQ-RLSEGPFPFPDKNWS 610



 Score =  135 bits (341), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 97/397 (24%), Positives = 176/397 (44%), Gaps = 69/397 (17%)

Query: 130 ANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFA 189
           ++LG   +A  +F+ + +  +  +N MI  + KSG+    +  ++ LR   +  + +++ 
Sbjct: 53  SSLGDFNYANRIFNYIHDPSLFIYNLMIKAFVKSGSFRSAISLFQQLREHGVWPDNYTYP 112

Query: 190 GILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDAR 249
            +L     + E++   +VH  V+ TG   +  + +S +D YA+ G +    ++F+E   R
Sbjct: 113 YVLKGIGCIGEVREGEKVHAFVVKTGLEFDPYVCNSFMDMYAELGLVEGFTQVFEEMPDR 172

Query: 250 DVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMM 309
           D ++W  M+SGY +    E A  ++  M       WT                       
Sbjct: 173 DAVSWNIMISGYVRCKRFEEAVDVYRRM-------WTE---------------------- 203

Query: 310 ILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLN 369
               +PN+ T  S L ACA + +L+ GK++H + I +     TI+ ++L+DMY KCG ++
Sbjct: 204 -SNEKPNEATVVSTLSACAVLRNLELGKEIHDY-IASELDLTTIMGNALLDMYCKCGHVS 261

Query: 370 DGRQVFDLTDNK------------------------------ENSMLWNTMISALTQHGY 399
             R++FD    K                               + +LW  MI+   Q   
Sbjct: 262 VAREIFDAMTVKNVNCWTSMVTGYVICGQLDQARNLFERSPSRDIVLWTAMINGYVQFNR 321

Query: 400 DEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHA 459
            E+ I LF +M    VKPDK  +  +L  C  SG +++G  +  +   +  I  +     
Sbjct: 322 FEETIALFGEMQIRGVKPDKFIVVTLLTGCAQSGALEQG-KWIHNYIDENRIKVDAVVGT 380

Query: 460 CLIELLAQAGC---SDQLMNQLEKMPYEHDSYLWNAL 493
            LIE+ A+ GC   S ++ N L+    E D+  W ++
Sbjct: 381 ALIEMYAKCGCIEKSFEIFNGLK----EKDTTSWTSI 413



 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 48/183 (26%), Positives = 97/183 (53%), Gaps = 2/183 (1%)

Query: 249 RDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRM 308
           RD L      S  + LGD   A+++FN + + +   +  +I  + ++G  + A+ LF ++
Sbjct: 40  RDTLNKLMAFSMDSSLGDFNYANRIFNYIHDPSLFIYNLMIKAFVKSGSFRSAISLFQQL 99

Query: 309 MILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCL 368
               + P+ +T+   L     I  ++ G++VH F+++T    +  V +S +DMY++ G +
Sbjct: 100 REHGVWPDNYTYPYVLKGIGCIGEVREGEKVHAFVVKTGLEFDPYVCNSFMDMYAELGLV 159

Query: 369 NDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDM-VRSSVKPDKITLAVILN 427
               QVF+   ++ +++ WN MIS   +    E+A+ ++  M   S+ KP++ T+   L+
Sbjct: 160 EGFTQVFEEMPDR-DAVSWNIMISGYVRCKRFEEAVDVYRRMWTESNEKPNEATVVSTLS 218

Query: 428 ACT 430
           AC 
Sbjct: 219 ACA 221


>gi|224073070|ref|XP_002303960.1| predicted protein [Populus trichocarpa]
 gi|222841392|gb|EEE78939.1| predicted protein [Populus trichocarpa]
          Length = 704

 Score =  290 bits (742), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 167/552 (30%), Positives = 271/552 (49%), Gaps = 64/552 (11%)

Query: 43  LAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCG 102
           +++ G R  + T+  IL   A+++ L++G  VH ++ L         +S  L+ MY KCG
Sbjct: 122 MSEEGHRPDSITIVSILPAVADTRLLRIGMAVHGYV-LRAGFESLVNVSTALVDMYSKCG 180

Query: 103 SDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAK 162
           S                               +  AR +FD M  R VVSWN+MI GY +
Sbjct: 181 S-------------------------------VSIARVIFDGMDHRTVVSWNSMIDGYVQ 209

Query: 163 SGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVI 222
           SG  E  +  ++ +    +     +  G L  C  L +L+  + VH  V      S+V +
Sbjct: 210 SGDAEGAMLIFQKMLDEGVQPTNVTVMGALHACADLGDLERGKFVHKLVDQLKLDSDVSV 269

Query: 223 SSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNP 282
            +S++  Y+KC  +                               + A+ +F  +  K  
Sbjct: 270 MNSLISMYSKCKRV-------------------------------DIAADIFKNLRNKTL 298

Query: 283 VSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGF 342
           VSW  +I GY +NG   +AL  F  M    I+P+  T  S + A A +   +  K +HG 
Sbjct: 299 VSWNAMILGYAQNGCVNEALNAFCEMQSRNIKPDSFTMVSVIPALAELSIPRQAKWIHGL 358

Query: 343 LIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQ 402
           +IR     N  VM++L+DMY+KCG ++  R++FD+  N  + + WN MI     HG  + 
Sbjct: 359 VIRRFLDKNVFVMTALVDMYAKCGAIHTARKLFDMM-NARHVITWNAMIDGYGTHGLGKT 417

Query: 403 AIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLI 462
           ++ LF +M + ++KP+ IT    L+AC+HSGLV+EGL +FESM  D GI P  +H+  ++
Sbjct: 418 SVELFKEMKKGTIKPNDITFLCALSACSHSGLVEEGLCFFESMKKDYGIEPTMDHYGAMV 477

Query: 463 ELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSA 522
           +LL +AG  +Q  + ++KMP +    ++ A+ G C+IH N+D+G K   ++   NP    
Sbjct: 478 DLLGRAGRLNQAWDFIQKMPIKPGITVYGAMLGACKIHKNVDLGEKAAFEIFKLNPDDGG 537

Query: 523 THGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDV 582
            H LL++IY+       V KVR ++ +   +K    S +EI N+VH+F    + HP    
Sbjct: 538 YHVLLANIYATASMWGKVAKVRTIMEKSGLQKTPGCSLVEIGNEVHSFYSGTTSHPQSKK 597

Query: 583 LYSVLEQLAGQM 594
           +YS LE L  ++
Sbjct: 598 IYSYLETLVDEI 609



 Score =  168 bits (425), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 114/396 (28%), Positives = 178/396 (44%), Gaps = 64/396 (16%)

Query: 33  LSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSN 92
           L  A+S    +    +R       ++L+ C ++  LK GK +H  + +T   +   F   
Sbjct: 11  LDSALSFFSRMKHDSVRPVVYNFTYLLKLCGDNSDLKRGKEIHGSV-ITSGFSWNLFAMT 69

Query: 93  HLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVS 152
            +++MY KC      R++ D                         A N+FD M ERD+V 
Sbjct: 70  GVVNMYAKC------RQIND-------------------------AYNMFDRMPERDLVC 98

Query: 153 WNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVL 212
           WNTMI GYA++G  +  L     +       +  +   IL        L++   VHG VL
Sbjct: 99  WNTMISGYAQNGFAKVALMLVLRMSEEGHRPDSITIVSILPAVADTRLLRIGMAVHGYVL 158

Query: 213 VTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASK 272
             GF S V +S+++VD Y+KCG +S AR +FD  D R V++W +M+ GY + GD E A  
Sbjct: 159 RAGFESLVNVSTALVDMYSKCGSVSIARVIFDGMDHRTVVSWNSMIDGYVQSGDAEGAML 218

Query: 273 LFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVS 332
           +F +M ++                                ++P   T    L ACA +  
Sbjct: 219 IFQKMLDEG-------------------------------VQPTNVTVMGALHACADLGD 247

Query: 333 LKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMIS 392
           L+ GK VH  + +    S+  VM+SLI MYSKC  ++    +F    NK   + WN MI 
Sbjct: 248 LERGKFVHKLVDQLKLDSDVSVMNSLISMYSKCKRVDIAADIFKNLRNK-TLVSWNAMIL 306

Query: 393 ALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNA 428
              Q+G   +A+  F +M   ++KPD  T+  ++ A
Sbjct: 307 GYAQNGCVNEALNAFCEMQSRNIKPDSFTMVSVIPA 342



 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 90/283 (31%), Positives = 147/283 (51%), Gaps = 32/283 (11%)

Query: 156 MIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTG 215
           M+ GYAKS +++  L F+  ++  S+    ++F  +L +C    +LK  +++HG V+ +G
Sbjct: 1   MLKGYAKSSSLDSALSFFSRMKHDSVRPVVYNFTYLLKLCGDNSDLKRGKEIHGSVITSG 60

Query: 216 FLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFN 275
           F  N+   + +V+ YAKC +++DA                                 +F+
Sbjct: 61  FSWNLFAMTGVVNMYAKCRQINDAY-------------------------------NMFD 89

Query: 276 EMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKH 335
            MPE++ V W T+I+GY +NG  + AL L  RM     RP+  T  S L A A    L+ 
Sbjct: 90  RMPERDLVCWNTMISGYAQNGFAKVALMLVLRMSEEGHRPDSITIVSILPAVADTRLLRI 149

Query: 336 GKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALT 395
           G  VHG+++R  F S   V ++L+DMYSKCG ++  R +FD  D++   + WN+MI    
Sbjct: 150 GMAVHGYVLRAGFESLVNVSTALVDMYSKCGSVSIARVIFDGMDHR-TVVSWNSMIDGYV 208

Query: 396 QHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEG 438
           Q G  E A+ +F  M+   V+P  +T+   L+AC   G ++ G
Sbjct: 209 QSGDAEGAMLIFQKMLDEGVQPTNVTVMGALHACADLGDLERG 251



 Score =  117 bits (292), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 79/295 (26%), Positives = 138/295 (46%), Gaps = 39/295 (13%)

Query: 18  NCLIQSFLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLH 77
           N +I  +   +  G    A+     +   G++    T+   L  CA+   L+ GK VH  
Sbjct: 201 NSMIDGY---VQSGDAEGAMLIFQKMLDEGVQPTNVTVMGALHACADLGDLERGKFVHKL 257

Query: 78  LKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKH 137
           +   +  +  + + N LISMY KC   VD                               
Sbjct: 258 VDQLKLDSDVSVM-NSLISMYSKC-KRVDI------------------------------ 285

Query: 138 ARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVK 197
           A ++F N+  + +VSWN MI+GYA++G V E L  +  ++  +I  + F+   ++    +
Sbjct: 286 AADIFKNLRNKTLVSWNAMILGYAQNGCVNEALNAFCEMQSRNIKPDSFTMVSVIPALAE 345

Query: 198 LEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTM 257
           L   +  + +HG V+      NV + +++VD YAKCG +  AR+LFD  +AR V+TW  M
Sbjct: 346 LSIPRQAKWIHGLVIRRFLDKNVFVMTALVDMYAKCGAIHTARKLFDMMNARHVITWNAM 405

Query: 258 VSGYAKLGDMESASKLFNEMP----EKNPVSWTTLIAGYTRNGLGQKALELFTRM 308
           + GY   G  +++ +LF EM     + N +++   ++  + +GL ++ L  F  M
Sbjct: 406 IDGYGTHGLGKTSVELFKEMKKGTIKPNDITFLCALSACSHSGLVEEGLCFFESM 460



 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 81/307 (26%), Positives = 141/307 (45%), Gaps = 40/307 (13%)

Query: 288 LIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTN 347
           ++ GY ++     AL  F+RM    +RP  + F+  L  C     LK GK++HG +I + 
Sbjct: 1   MLKGYAKSSSLDSALSFFSRMKHDSVRPVVYNFTYLLKLCGDNSDLKRGKEIHGSVITSG 60

Query: 348 FRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLF 407
           F  N   M+ +++MY+KC  +ND   +FD    ++  + WNTMIS   Q+G+ + A+ L 
Sbjct: 61  FSWNLFAMTGVVNMYAKCRQINDAYNMFDRMPERD-LVCWNTMISGYAQNGFAKVALMLV 119

Query: 408 HDMVRSSVKPDKITLAVILNACTHSGLVQEGLTY--------FESMTH------DLG--- 450
             M     +PD IT+  IL A   + L++ G+          FES+ +      D+    
Sbjct: 120 LRMSEEGHRPDSITIVSILPAVADTRLLRIGMAVHGYVLRAGFESLVNVSTALVDMYSKC 179

Query: 451 --------IIPNQEHHAC-----LIELLAQAGCSDQLMNQLEKMPYEH----DSYLWNAL 493
                   I    +H        +I+   Q+G ++  M   +KM  E     +  +  AL
Sbjct: 180 GSVSIARVIFDGMDHRTVVSWNSMIDGYVQSGDAEGAMLIFQKMLDEGVQPTNVTVMGAL 239

Query: 494 HGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFK 553
           H  C   G+++ G K V +L+DQ    S    +++S+ S   K + V+    +   +  +
Sbjct: 240 HA-CADLGDLERG-KFVHKLVDQLKLDSDV-SVMNSLISMYSKCKRVDIAADIF--KNLR 294

Query: 554 KEQAISW 560
            +  +SW
Sbjct: 295 NKTLVSW 301


>gi|15227724|ref|NP_178481.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206038|sp|Q9SI53.1|PP147_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g03880, mitochondrial; Flags: Precursor
 gi|4582435|gb|AAD24821.1| putative selenium-binding protein [Arabidopsis thaliana]
 gi|330250668|gb|AEC05762.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 630

 Score =  290 bits (742), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 167/559 (29%), Positives = 283/559 (50%), Gaps = 69/559 (12%)

Query: 20  LIQSFLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLK 79
           L+  F  L  +  L  A+ ++D L   G+   + T + +++ C  ++++  G  +  HL 
Sbjct: 29  LLSEFTRLCYQRDLPRAMKAMDSLQSHGLWADSATYSELIKCCISNRAVHEGNLICRHLY 88

Query: 80  LTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHAR 139
               + P  FL N LI+MY K                                 ++  A 
Sbjct: 89  FNGHR-PMMFLVNVLINMYVK-------------------------------FNLLNDAH 116

Query: 140 NLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLE 199
            LFD M +R+V+SW TMI  Y+K    ++ L+   ++ R ++  N ++++ +L  C  + 
Sbjct: 117 QLFDQMPQRNVISWTTMISAYSKCKIHQKALELLVLMLRDNVRPNVYTYSSVLRSCNGMS 176

Query: 200 ELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVS 259
           ++   R +H  ++  G  S+V + S+++D +                             
Sbjct: 177 DV---RMLHCGIIKEGLESDVFVRSALIDVF----------------------------- 204

Query: 260 GYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHT 319
             AKLG+ E A  +F+EM   + + W ++I G+ +N     ALELF RM        Q T
Sbjct: 205 --AKLGEPEDALSVFDEMVTGDAIVWNSIIGGFAQNSRSDVALELFKRMKRAGFIAEQAT 262

Query: 320 FSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTD 379
            +S L AC  +  L+ G Q H  +++  +  + I+ ++L+DMY KCG L D  +VF+   
Sbjct: 263 LTSVLRACTGLALLELGMQAHVHIVK--YDQDLILNNALVDMYCKCGSLEDALRVFNQMK 320

Query: 380 NKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGL 439
            ++  + W+TMIS L Q+GY ++A++LF  M  S  KP+ IT+  +L AC+H+GL+++G 
Sbjct: 321 ERD-VITWSTMISGLAQNGYSQEALKLFERMKSSGTKPNYITIVGVLFACSHAGLLEDGW 379

Query: 440 TYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRI 499
            YF SM    GI P +EH+ C+I+LL +AG  D  +  L +M  E D+  W  L G CR+
Sbjct: 380 YYFRSMKKLYGIDPVREHYGCMIDLLGKAGKLDDAVKLLNEMECEPDAVTWRTLLGACRV 439

Query: 500 HGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAIS 559
             N+ +      ++I  +P+ + T+ LLS+IY+   K   VE++R  + +R  KKE   S
Sbjct: 440 QRNMVLAEYAAKKVIALDPEDAGTYTLLSNIYANSQKWDSVEEIRTRMRDRGIKKEPGCS 499

Query: 560 WIEIENKVHAFSVSDSLHP 578
           WIE+  ++HAF + D+ HP
Sbjct: 500 WIEVNKQIHAFIIGDNSHP 518



 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 78/314 (24%), Positives = 132/314 (42%), Gaps = 62/314 (19%)

Query: 54  TLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDK 113
           TL  +L+ C     L+LG + H+H+    +      L+N L+ MY KCGS  DA +V   
Sbjct: 262 TLTSVLRACTGLALLELGMQAHVHI---VKYDQDLILNNALVDMYCKCGSLEDALRV--- 315

Query: 114 IPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFY 173
                                       F+ M ERDV++W+TMI G A++G  +E LK +
Sbjct: 316 ----------------------------FNQMKERDVITWSTMISGLAQNGYSQEALKLF 347

Query: 174 KVLRRFSISCNEFSFAGILTICVK---LEE----LKLTRQVHGQVLVTGFLSNVVISSSI 226
           + ++      N  +  G+L  C     LE+     +  ++++G   V            +
Sbjct: 348 ERMKSSGTKPNYITIVGVLFACSHAGLLEDGWYYFRSMKKLYGIDPVREHY------GCM 401

Query: 227 VDAYAKCGELSDARRLFDETDAR-DVLTWTTMVSGYAKLGDM---ESASKLFNEMPEKNP 282
           +D   K G+L DA +L +E +   D +TW T++       +M   E A+K    +  ++ 
Sbjct: 402 IDLLGKAGKLDDAVKLLNEMECEPDAVTWRTLLGACRVQRNMVLAEYAAKKVIALDPEDA 461

Query: 283 VSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGF 342
            ++T L   Y  +       E+ TRM    I+            C+ I   +  KQ+H F
Sbjct: 462 GTYTLLSNIYANSQKWDSVEEIRTRMRDRGIKKEP--------GCSWI---EVNKQIHAF 510

Query: 343 LIRTNFRSNTIVMS 356
           +I  N     + +S
Sbjct: 511 IIGDNSHPQIVEVS 524


>gi|357507205|ref|XP_003623891.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355498906|gb|AES80109.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1288

 Score =  290 bits (741), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 142/448 (31%), Positives = 257/448 (57%), Gaps = 1/448 (0%)

Query: 118  NLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLR 177
            +LF  N ++ GYA    +  AR +FD M+ERD+VSWN++I GY +     E L  ++ +R
Sbjct: 829  DLFVSNALIHGYAGFCELGFARKVFDEMSERDLVSWNSLICGYGRCRRYSEVLVVFEEMR 888

Query: 178  RFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELS 237
               +  +  +   ++  C  L E  +   +   +       +V + ++++D Y +   + 
Sbjct: 889  MADVKGDAVTMVKVVLACTVLGEWGVVDAMIEYIEENKVEVDVYLGNTLIDMYGRRSMVD 948

Query: 238  DARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGL 297
             ARR+FD    R++++W  M+ GY K G++ +A KLF++MP ++ +SWT++I+ Y++ G 
Sbjct: 949  LARRVFDRMRDRNMVSWNAMIMGYGKAGNLVAARKLFDDMPHRDVISWTSMISSYSQAGQ 1008

Query: 298  GQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSS 357
              KA+ LF  MM+ +++P++ T +S L ACA I +L  G+ VH ++ + +  ++  V ++
Sbjct: 1009 FGKAVRLFQEMMVTKVKPDEITVASVLSACAHIGALDVGEAVHEYIRKYDVNADIYVGNA 1068

Query: 358  LIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKP 417
            LIDMY KCG +  G  VF+    K +S+ W ++I+ L  +G  + A+ LF  M+R  V+P
Sbjct: 1069 LIDMYCKCGAVEKGLSVFEEM-GKRDSVSWTSVIAGLAVNGSADSALNLFSLMLREGVRP 1127

Query: 418  DKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQ 477
               T   +L AC H+G+V +GL YFESM    G+ P  +H+ C+++LL+++G   +    
Sbjct: 1128 THGTFVGVLLACAHAGVVDKGLEYFESMERVYGLTPEMKHYGCVVDLLSRSGNLGRAYEF 1187

Query: 478  LEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKG 537
            +++MP + D  +W  L    ++HGN+ +      +L++ +P +S  + L S+ Y+   + 
Sbjct: 1188 IKRMPMDPDVVVWRILLSASQVHGNLHLAEIATKKLLETDPSNSGNYILSSNTYAGSNRW 1247

Query: 538  RLVEKVRQLINERQFKKEQAISWIEIEN 565
              V K+R+L+ E    K  A S +EI +
Sbjct: 1248 EDVIKMRRLMEESNVHKPSASSSVEIND 1275



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 82/313 (26%), Positives = 145/313 (46%), Gaps = 34/313 (10%)

Query: 88   TFLSNHLISMYFKCGSDVD-ARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMA 146
             +L N LI MY +  S VD AR+VFD++  +N+ S+N M+ GY   G +  AR LFD+M 
Sbjct: 931  VYLGNTLIDMYGR-RSMVDLARRVFDRMRDRNMVSWNAMIMGYGKAGNLVAARKLFDDMP 989

Query: 147  ERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQ 206
             RDV+SW +MI  Y+++G   + ++ ++ +    +  +E + A +L+ C  +  L +   
Sbjct: 990  HRDVISWTSMISSYSQAGQFGKAVRLFQEMMVTKVKPDEITVASVLSACAHIGALDVGEA 1049

Query: 207  VHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGD 266
            VH  +      +++ + ++++D Y KCG +     +F+E   RD ++WT++++G A    
Sbjct: 1050 VHEYIRKYDVNADIYVGNALIDMYCKCGAVEKGLSVFEEMGKRDSVSWTSVIAGLAV--- 1106

Query: 267  MESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCA 326
                                        NG    AL LF+ M+   +RP   TF   L A
Sbjct: 1107 ----------------------------NGSADSALNLFSLMLREGVRPTHGTFVGVLLA 1138

Query: 327  CASIVSLKHGKQVHGFLIRT-NFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSM 385
            CA    +  G +    + R             ++D+ S+ G L    +         + +
Sbjct: 1139 CAHAGVVDKGLEYFESMERVYGLTPEMKHYGCVVDLLSRSGNLGRAYEFIKRMPMDPDVV 1198

Query: 386  LWNTMISALTQHG 398
            +W  ++SA   HG
Sbjct: 1199 VWRILLSASQVHG 1211



 Score =  131 bits (330), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 109/432 (25%), Positives = 211/432 (48%), Gaps = 31/432 (7%)

Query: 124  NMLSGYA--NLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSI 181
            N+L  YA     ++K A  LF  +    +  WN MI G++++    E ++ Y ++   ++
Sbjct: 734  NLLKSYALSPTNILK-ANELFRQIPRPTLSHWNIMIRGWSQTNQPIEAIRNYNLMYSQAL 792

Query: 182  SCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARR 241
              N  ++  +L  C ++  +  T  VH +VL  GF S++ +S++++  YA   EL  AR+
Sbjct: 793  FGNNLTYPFLLKACARISNVSCT-TVHARVLKLGFDSDLFVSNALIHGYAGFCELGFARK 851

Query: 242  LFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMP----EKNPVSWTTLIAGYTRNGL 297
            +FDE   RD+++W +++ GY +         +F EM     + + V+   ++   T   L
Sbjct: 852  VFDEMSERDLVSWNSLICGYGRCRRYSEVLVVFEEMRMADVKGDAVTMVKVVLACTV--L 909

Query: 298  GQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNF----RSNTI 353
            G+  +      MI  I  N+      L    + +   +G++    L R  F      N +
Sbjct: 910  GEWGV---VDAMIEYIEENKVEVDVYL---GNTLIDMYGRRSMVDLARRVFDRMRDRNMV 963

Query: 354  VMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRS 413
              +++I  Y K G L   R++FD   +++  + W +MIS+ +Q G   +A+RLF +M+ +
Sbjct: 964  SWNAMIMGYGKAGNLVAARKLFDDMPHRD-VISWTSMISSYSQAGQFGKAVRLFQEMMVT 1022

Query: 414  SVKPDKITLAVILNACTHSGLVQEGLTYFESM-THDLGIIPNQEHHA--CLIELLAQAGC 470
             VKPD+IT+A +L+AC H G +  G    E +  +D+    N + +    LI++  + G 
Sbjct: 1023 KVKPDEITVASVLSACAHIGALDVGEAVHEYIRKYDV----NADIYVGNALIDMYCKCGA 1078

Query: 471  SDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSI 530
             ++ ++  E+M  + DS  W ++     ++G+ D    +   ++ +  +   THG    +
Sbjct: 1079 VEKGLSVFEEMG-KRDSVSWTSVIAGLAVNGSADSALNLFSLMLREGVR--PTHGTFVGV 1135

Query: 531  YSALGKGRLVEK 542
              A     +V+K
Sbjct: 1136 LLACAHAGVVDK 1147



 Score = 62.4 bits (150), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 45/173 (26%), Positives = 87/173 (50%), Gaps = 10/173 (5%)

Query: 14   NLPNNCLIQSFLSLISK----GQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLK 69
            ++P+  +I S+ S+IS     GQ  +A+     +    ++    T+A +L  CA   +L 
Sbjct: 987  DMPHRDVI-SWTSMISSYSQAGQFGKAVRLFQEMMVTKVKPDEITVASVLSACAHIGALD 1045

Query: 70   LGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGY 129
            +G+ VH +++         ++ N LI MY KCG+      VF+++  ++  S+ ++++G 
Sbjct: 1046 VGEAVHEYIR-KYDVNADIYVGNALIDMYCKCGAVEKGLSVFEEMGKRDSVSWTSVIAGL 1104

Query: 130  ANLGMMKHARNLFDNMAERDVVSWNTMIIGY----AKSGAVEEGLKFYKVLRR 178
            A  G    A NLF  M    V   +   +G     A +G V++GL++++ + R
Sbjct: 1105 AVNGSADSALNLFSLMLREGVRPTHGTFVGVLLACAHAGVVDKGLEYFESMER 1157


>gi|297798510|ref|XP_002867139.1| EMB2758 [Arabidopsis lyrata subsp. lyrata]
 gi|297312975|gb|EFH43398.1| EMB2758 [Arabidopsis lyrata subsp. lyrata]
          Length = 824

 Score =  290 bits (741), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 157/475 (33%), Positives = 258/475 (54%), Gaps = 35/475 (7%)

Query: 119 LFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRR 178
           LF  N ++  YA  G +K  + +FD M  RD++SWN++I  Y  +      +  ++ +R 
Sbjct: 282 LFVSNKLIDLYAEFGSLKDCQKVFDRMYVRDLISWNSIIKAYELNEQPLRAILLFQEMRL 341

Query: 179 FSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTG-FLSNVVISSSIVDAYAKCGELS 237
             I  +  +   + +I  +L E++  R V G  L  G FL ++ I +++V  YAK     
Sbjct: 342 SRIQPDCLTLISLASILSQLGEIRACRSVQGFTLRKGWFLEDITIGNAVVVMYAK----- 396

Query: 238 DARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGL 297
                                     LG ++SA  +FN +P K+ +SW T+I+GY +NG 
Sbjct: 397 --------------------------LGLVDSARAVFNWLPNKDVISWNTIISGYAQNGF 430

Query: 298 GQKALELFTRMMIL--RIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVM 355
             +A+E++  M      I  NQ T+ S L AC+   +L+ G ++HG L++     +  V 
Sbjct: 431 ASEAIEMYNIMEEEGGEISANQGTWVSVLPACSQAGALRQGMKLHGRLLKNGLYLDVFVG 490

Query: 356 SSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSV 415
           +SL DMY KCG L+D   +F     + NS+ WNT+I+    HG+ E+A+ LF +M+   V
Sbjct: 491 TSLADMYGKCGRLDDALSLF-YQIPRVNSVPWNTLIACHGFHGHGEKAVMLFKEMLDEGV 549

Query: 416 KPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLM 475
           KPD IT   +L+AC+HSGLV EG   FE M  D GI P+ +H+ C+++L  +AG  +  +
Sbjct: 550 KPDHITFVTLLSACSHSGLVDEGEWCFEMMQTDYGITPSLKHYGCMVDLYGRAGQLEIAL 609

Query: 476 NQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALG 535
           N ++ MP + D+ +W AL   CR+HGN+D+G+   + L +  P+    H LLS++Y++ G
Sbjct: 610 NFIKSMPLQPDASIWGALLSACRVHGNVDLGKIASEHLFEVEPEHVGYHVLLSNMYASAG 669

Query: 536 KGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQL 590
           K   V+++R + + +  +K    S +E++NKV  F   +  HPM + +Y  L  L
Sbjct: 670 KWEGVDEIRSITSGKGLRKTPGWSSMEVDNKVEVFYTGNQTHPMYEEMYRELTAL 724



 Score =  135 bits (341), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 113/516 (21%), Positives = 225/516 (43%), Gaps = 79/516 (15%)

Query: 31  GQLSEAISSLDL-LAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTF 89
           G  SE I    L +   G++    T   +L+ C   +++  G ++H  L L        +
Sbjct: 131 GYSSEVIRCFSLFMLSSGLQPDYRTFPSVLKAC---RNVTDGNKIHC-LALKFGFMWDVY 186

Query: 90  LSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERD 149
           ++  LI +Y + G+ V+AR +FD++P +++ S+N M+SGY   G  K A  L D +   D
Sbjct: 187 VAASLIHLYCRYGAVVNARILFDEMPTRDMGSWNAMISGYCQSGNAKEALTLSDGLRAMD 246

Query: 150 VVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHG 209
            V                                   +   +L+ C +  +      +H 
Sbjct: 247 SV-----------------------------------TVVSLLSACTEAGDFNRGVTIHS 271

Query: 210 QVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMES 269
             +  G  S + +S+ ++D YA+ G L D +++FD    RD+++W +++  Y        
Sbjct: 272 YSIKHGLESELFVSNKLIDLYAEFGSLKDCQKVFDRMYVRDLISWNSIIKAYE------- 324

Query: 270 ASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACAS 329
                NE P                     +A+ LF  M + RI+P+  T  S     + 
Sbjct: 325 ----LNEQP--------------------LRAILLFQEMRLSRIQPDCLTLISLASILSQ 360

Query: 330 IVSLKHGKQVHGFLIRTN-FRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWN 388
           +  ++  + V GF +R   F  +  + ++++ MY+K G ++  R VF+   NK+  + WN
Sbjct: 361 LGEIRACRSVQGFTLRKGWFLEDITIGNAVVVMYAKLGLVDSARAVFNWLPNKD-VISWN 419

Query: 389 TMISALTQHGYDEQAIRLFHDMVR--SSVKPDKITLAVILNACTHSGLVQEGLTYFESMT 446
           T+IS   Q+G+  +AI +++ M      +  ++ T   +L AC+ +G +++G+     + 
Sbjct: 420 TIISGYAQNGFASEAIEMYNIMEEEGGEISANQGTWVSVLPACSQAGALRQGMKLHGRLL 479

Query: 447 HDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMG 506
            + G+  +      L ++  + G  D  ++   ++P   +S  WN L      HG+ +  
Sbjct: 480 KN-GLYLDVFVGTSLADMYGKCGRLDDALSLFYQIP-RVNSVPWNTLIACHGFHGHGEKA 537

Query: 507 RKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEK 542
             +  +++D+  +    H    ++ SA     LV++
Sbjct: 538 VMLFKEMLDEGVKPD--HITFVTLLSACSHSGLVDE 571



 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 82/308 (26%), Positives = 145/308 (47%), Gaps = 40/308 (12%)

Query: 116 VKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKV 175
           ++N+     +++ Y  LG +  AR  FD++  RDV +WN MI GY ++G   E ++ + +
Sbjct: 83  IQNVCISAKLVNLYCYLGNVALARYTFDHIHNRDVYAWNLMISGYGRAGYSSEVIRCFSL 142

Query: 176 LRRFS-ISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCG 234
               S +  +  +F  +L  C  + +     ++H   L  GF+ +V +++S++  Y + G
Sbjct: 143 FMLSSGLQPDYRTFPSVLKACRNVTD---GNKIHCLALKFGFMWDVYVAASLIHLYCRYG 199

Query: 235 ELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTR 294
            + +AR LFDE   RD+ +W  M+SGY + G+ + A  L + +   + V           
Sbjct: 200 AVVNARILFDEMPTRDMGSWNAMISGYCQSGNAKEALTLSDGLRAMDSV----------- 248

Query: 295 NGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIV 354
                                   T  S L AC        G  +H + I+    S   V
Sbjct: 249 ------------------------TVVSLLSACTEAGDFNRGVTIHSYSIKHGLESELFV 284

Query: 355 MSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSS 414
            + LID+Y++ G L D ++VFD    ++  + WN++I A   +    +AI LF +M  S 
Sbjct: 285 SNKLIDLYAEFGSLKDCQKVFDRMYVRD-LISWNSIIKAYELNEQPLRAILLFQEMRLSR 343

Query: 415 VKPDKITL 422
           ++PD +TL
Sbjct: 344 IQPDCLTL 351



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 83/307 (27%), Positives = 141/307 (45%), Gaps = 51/307 (16%)

Query: 191 ILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARD 250
           +   C  L+  K    +H +++V+  + NV IS+ +V+ Y   G ++ AR  FD    RD
Sbjct: 60  LFRYCTNLQSAKC---LHARLVVSNAIQNVCISAKLVNLYCYLGNVALARYTFDHIHNRD 116

Query: 251 VLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMI 310
           V  W  M+SGY +                          AGY+   +  +   LF  M+ 
Sbjct: 117 VYAWNLMISGYGR--------------------------AGYSSEVI--RCFSLF--MLS 146

Query: 311 LRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLND 370
             ++P+  TF S L AC ++     G ++H   ++  F  +  V +SLI +Y + G + +
Sbjct: 147 SGLQPDYRTFPSVLKACRNVTD---GNKIHCLALKFGFMWDVYVAASLIHLYCRYGAVVN 203

Query: 371 GRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACT 430
            R +FD    ++    WN MIS   Q G  ++A+ L  D +R+    D +T+  +L+ACT
Sbjct: 204 ARILFDEMPTRDMGS-WNAMISGYCQSGNAKEALTL-SDGLRAM---DSVTVVSLLSACT 258

Query: 431 HSGLVQEGLT-YFESMTHDLG---IIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHD 486
            +G    G+T +  S+ H L     + N+     LI+L A+ G         ++M Y  D
Sbjct: 259 EAGDFNRGVTIHSYSIKHGLESELFVSNK-----LIDLYAEFGSLKDCQKVFDRM-YVRD 312

Query: 487 SYLWNAL 493
              WN++
Sbjct: 313 LISWNSI 319



 Score = 95.5 bits (236), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 88/368 (23%), Positives = 151/368 (41%), Gaps = 73/368 (19%)

Query: 90  LSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERD 149
           + N ++ MY K G    AR VF+ +P K++ S+N ++SGYA  G    A  +++ M E  
Sbjct: 386 IGNAVVVMYAKLGLVDSARAVFNWLPNKDVISWNTIISGYAQNGFASEAIEMYNIMEE-- 443

Query: 150 VVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHG 209
                            E G           IS N+ ++  +L  C +   L+   ++HG
Sbjct: 444 -----------------EGG----------EISANQGTWVSVLPACSQAGALRQGMKLHG 476

Query: 210 QVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMES 269
           ++L  G   +V + +S+ D Y KCG L DA  LF +    + + W T+++ +   G  E 
Sbjct: 477 RLLKNGLYLDVFVGTSLADMYGKCGRLDDALSLFYQIPRVNSVPWNTLIACHGFHGHGEK 536

Query: 270 ASKLFNEMPEK----NPVSWTTLIAGYTRNGLGQKALELFTRMMI-LRIRPNQHTFSSCL 324
           A  LF EM ++    + +++ TL++  + +GL  +    F  M     I P         
Sbjct: 537 AVMLFKEMLDEGVKPDHITFVTLLSACSHSGLVDEGEWCFEMMQTDYGITP--------- 587

Query: 325 CACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENS 384
                  SLKH                      ++D+Y + G L            + ++
Sbjct: 588 -------SLKH-------------------YGCMVDLYGRAGQLEIALNFIKSMPLQPDA 621

Query: 385 MLWNTMISALTQHG-YDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFE 443
            +W  ++SA   HG  D   I   H      V+P+ +   V+L+    S    EG+    
Sbjct: 622 SIWGALLSACRVHGNVDLGKIASEHLF---EVEPEHVGYHVLLSNMYASAGKWEGVDEIR 678

Query: 444 SMTHDLGI 451
           S+T   G+
Sbjct: 679 SITSGKGL 686



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 48/165 (29%), Positives = 82/165 (49%), Gaps = 12/165 (7%)

Query: 15  LPNNCLIQSFLSLIS----KGQLSEAISSLDLLAQRGIRLPAE--TLAFILQQCAESKSL 68
           LPN  +I S+ ++IS     G  SEAI   +++ + G  + A   T   +L  C+++ +L
Sbjct: 410 LPNKDVI-SWNTIISGYAQNGFASEAIEMYNIMEEEGGEISANQGTWVSVLPACSQAGAL 468

Query: 69  KLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSG 128
           + G ++H  L L        F+   L  MY KCG   DA  +F +IP  N   +N +++ 
Sbjct: 469 RQGMKLHGRL-LKNGLYLDVFVGTSLADMYGKCGRLDDALSLFYQIPRVNSVPWNTLIAC 527

Query: 129 YANLGMMKHARNLFDNMAERDV----VSWNTMIIGYAKSGAVEEG 169
           +   G  + A  LF  M +  V    +++ T++   + SG V+EG
Sbjct: 528 HGFHGHGEKAVMLFKEMLDEGVKPDHITFVTLLSACSHSGLVDEG 572


>gi|356498922|ref|XP_003518295.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g14470-like [Glycine max]
          Length = 682

 Score =  290 bits (741), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 156/481 (32%), Positives = 275/481 (57%), Gaps = 14/481 (2%)

Query: 92  NHLISMYFKCGSDVDARKVFDKI--PVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERD 149
           N +IS Y+KCG++ +A ++F  +    KN+ ++  M++G+A +  ++ AR  FD M ER 
Sbjct: 169 NVIISGYWKCGNEKEATRLFCMMGESEKNVITWTTMVTGHAKMRNLETARMYFDEMPERR 228

Query: 150 VVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHG 209
           V SWN M+ GYA+SGA +E ++ +  +       +E ++  +L+ C  L +  L   +  
Sbjct: 229 VASWNAMLSGYAQSGAAQETVRLFDDMLSSGNEPDETTWVTVLSSCSSLGDPCLAESIVR 288

Query: 210 QVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDA-RDVLTWTTMVSGYAKLGDME 268
           ++    F SN  + ++++D +AKCG L  A+++F++    ++ +TW  M+S YA++GD+ 
Sbjct: 289 KLDRMNFRSNYFVKTALLDMHAKCGNLEVAQKIFEQLGVYKNSVTWNAMISAYARVGDLS 348

Query: 269 SASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILR-IRPNQHTFSSCLCAC 327
            A  LFN+MPE+N VSW ++IAGY +NG   KA++LF  M+  +  +P++ T  S   AC
Sbjct: 349 LARDLFNKMPERNTVSWNSMIAGYAQNGESLKAIQLFKEMISSKDSKPDEVTMVSVFSAC 408

Query: 328 ASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLW 387
             +  L  G      L   + + +    +SLI MY +CG + D R  F     K+  + +
Sbjct: 409 GHLGRLGLGNWAVSILHENHIKLSISGYNSLIFMYLRCGSMEDARITFQEMATKD-LVSY 467

Query: 388 NTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTH 447
           NT+IS L  HG+  ++I+L   M    + PD+IT   +L AC+H+GL++EG   FES+  
Sbjct: 468 NTLISGLAAHGHGTESIKLMSKMKEDGIGPDRITYIGVLTACSHAGLLEEGWKVFESIK- 526

Query: 448 DLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGR 507
               +P+ +H+AC+I++L + G  ++ +  ++ MP E  + ++ +L     IH  +++G 
Sbjct: 527 ----VPDVDHYACMIDMLGRVGKLEEAVKLIQSMPMEPHAGIYGSLLNATSIHKQVELGE 582

Query: 508 KVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKV 567
               +L    P +S  + LLS+IY+  G+ + V+KVR  + ++  KK   I    +EN+ 
Sbjct: 583 LAAAKLFKVEPHNSGNYVLLSNIYALAGRWKDVDKVRDKMRKQGVKKTTFI----VENRP 638

Query: 568 H 568
           H
Sbjct: 639 H 639



 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 86/292 (29%), Positives = 143/292 (48%), Gaps = 65/292 (22%)

Query: 207 VHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDAR----------------- 249
           +H  +L  G   +  + ++I+  YAK G +  AR+LFDE   R                 
Sbjct: 121 LHAYLLKLGHSHDHHVRNAIMGIYAKYGCIELARKLFDEMPDRTAADWNVIISGYWKCGN 180

Query: 250 ----------------DVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYT 293
                           +V+TWTTMV+G+AK+ ++E+A   F+EMPE+   SW  +++GY 
Sbjct: 181 EKEATRLFCMMGESEKNVITWTTMVTGHAKMRNLETARMYFDEMPERRVASWNAMLSGYA 240

Query: 294 RNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTI 353
           ++G  Q+ + LF  M+     P++ T+ + L +C+S+      + +   L R NFRSN  
Sbjct: 241 QSGAAQETVRLFDDMLSSGNEPDETTWVTVLSSCSSLGDPCLAESIVRKLDRMNFRSNYF 300

Query: 354 VMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISA-------------------- 393
           V ++L+DM++KCG L   +++F+     +NS+ WN MISA                    
Sbjct: 301 VKTALLDMHAKCGNLEVAQKIFEQLGVYKNSVTWNAMISAYARVGDLSLARDLFNKMPER 360

Query: 394 -----------LTQHGYDEQAIRLFHDMVRS-SVKPDKITLAVILNACTHSG 433
                        Q+G   +AI+LF +M+ S   KPD++T+  + +AC H G
Sbjct: 361 NTVSWNSMIAGYAQNGESLKAIQLFKEMISSKDSKPDEVTMVSVFSACGHLG 412


>gi|357498701|ref|XP_003619639.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494654|gb|AES75857.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1182

 Score =  290 bits (741), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 157/477 (32%), Positives = 256/477 (53%), Gaps = 8/477 (1%)

Query: 123 NNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKS--GAVEEGLKFYKVLRRFS 180
           N  L   A L  + +A  LFD + + D+  +NTMI  ++ S    ++    F  ++R   
Sbjct: 215 NKFLKNVA-LASLTYAHKLFDQIPQPDLFIYNTMIKSHSMSPHSYLDSIAVFRSLIRDSG 273

Query: 181 ISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDAR 240
              N +SF      C     ++   QV    +  G   NV + ++++  + K G + DAR
Sbjct: 274 YFPNRYSFVFAFGACGNGMCVREGEQVFTHAVKVGLDGNVFVVNALIGMFGKWGRVEDAR 333

Query: 241 RLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQK 300
            +FD    RD  +W TM+  Y   G+M  A +LF+EM E++ VSW+T+IAGY + G   +
Sbjct: 334 NVFDSAVDRDFYSWNTMIGAYVGSGNMVLAKELFDEMHERDVVSWSTIIAGYVQVGCFME 393

Query: 301 ALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLID 360
           AL+ F +M+   ++PN++T  S L AC+++V+L  GK +H ++ R N + N  +++SLID
Sbjct: 394 ALDFFHKMLQSEVKPNEYTMVSALAACSNLVALDQGKWIHVYIRRDNIKMNDRLLASLID 453

Query: 361 MYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKI 420
           MY+KCG ++    VF     K     WN MI     HG  E+AI +F  M    V P+K+
Sbjct: 454 MYAKCGEIDSASSVFHEHKVKRKVWPWNAMIGGFAMHGKPEEAINVFEKMKVEKVSPNKV 513

Query: 421 TLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEK 480
           T   +LNAC+H  +V+EG +YFE M  D GI P  EH+ C+++LL+++G        +  
Sbjct: 514 TFIALLNACSHGYMVKEGKSYFELMASDYGINPEIEHYGCMVDLLSRSGHLKDSEEMILS 573

Query: 481 MPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGK---G 537
           MP   D  +W AL   CRI+ +++ G ++   + + +P     + LL +IYS  G+    
Sbjct: 574 MPMAPDVAIWGALLNACRIYKDMERGYRIGRIIKEIDPNHIGCNVLLGNIYSTSGRWNEA 633

Query: 538 RLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQM 594
           R+V +  ++ ++R  KK    S IE+    H F V D  HP    +YS L+++  ++
Sbjct: 634 RMVREKNEINSDR--KKIPGFSSIELNGVFHEFLVGDRSHPQSREIYSFLDEMISKL 688



 Score =  145 bits (367), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 103/389 (26%), Positives = 172/389 (44%), Gaps = 39/389 (10%)

Query: 54  TLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDK 113
           +  F    C     ++ G++V  H  +        F+ N LI M+ K G   DAR VFD 
Sbjct: 280 SFVFAFGACGNGMCVREGEQVFTH-AVKVGLDGNVFVVNALIGMFGKWGRVEDARNVFDS 338

Query: 114 IPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFY 173
              ++ +S+N M+  Y   G M  A+ LFD M ERDVVSW+T+I GY + G   E L F+
Sbjct: 339 AVDRDFYSWNTMIGAYVGSGNMVLAKELFDEMHERDVVSWSTIIAGYVQVGCFMEALDFF 398

Query: 174 KVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKC 233
             + +  +  NE++    L  C  L  L   + +H  +       N  + +S++D YAKC
Sbjct: 399 HKMLQSEVKPNEYTMVSALAACSNLVALDQGKWIHVYIRRDNIKMNDRLLASLIDMYAKC 458

Query: 234 GELSDARRLFDETDA-RDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGY 292
           GE+  A  +F E    R V  W  M+ G+A  G  E                        
Sbjct: 459 GEIDSASSVFHEHKVKRKVWPWNAMIGGFAMHGKPE------------------------ 494

Query: 293 TRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNT 352
                  +A+ +F +M + ++ PN+ TF + L AC+    +K GK     L+ +++  N 
Sbjct: 495 -------EAINVFEKMKVEKVSPNKVTFIALLNACSHGYMVKEGKSYFE-LMASDYGINP 546

Query: 353 IV--MSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDM 410
            +     ++D+ S+ G L D  ++        +  +W  +++A   +   E+  R+    
Sbjct: 547 EIEHYGCMVDLLSRSGHLKDSEEMILSMPMAPDVAIWGALLNACRIYKDMERGYRI--GR 604

Query: 411 VRSSVKPDKITLAVIL-NACTHSGLVQEG 438
           +   + P+ I   V+L N  + SG   E 
Sbjct: 605 IIKEIDPNHIGCNVLLGNIYSTSGRWNEA 633



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 58/259 (22%), Positives = 107/259 (41%), Gaps = 37/259 (14%)

Query: 28  ISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPT 87
           +  G   EA+     + Q  ++    T+   L  C+   +L  GK +H++++    K   
Sbjct: 386 VQVGCFMEALDFFHKMLQSEVKPNEYTMVSALAACSNLVALDQGKWIHVYIRRDNIKMND 445

Query: 88  TFLSNHLISMYFKCGSDVDARKVFDKIPVK-NLFSYNNMLSGYANLGMMKHARNLFDNMA 146
             L++ LI MY KCG    A  VF +  VK  ++ +N M+ G+A  G  + A N+F+ M 
Sbjct: 446 RLLAS-LIDMYAKCGEIDSASSVFHEHKVKRKVWPWNAMIGGFAMHGKPEEAINVFEKM- 503

Query: 147 ERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQ 206
                              VE+            +S N+ +F  +L  C     +K  + 
Sbjct: 504 ------------------KVEK------------VSPNKVTFIALLNACSHGYMVKEGKS 533

Query: 207 VHGQVLVTGFLSNVVIS--SSIVDAYAKCGELSDARRLFDETD-ARDVLTWTTMVSGYAK 263
            + +++ + +  N  I     +VD  ++ G L D+  +      A DV  W  +++    
Sbjct: 534 -YFELMASDYGINPEIEHYGCMVDLLSRSGHLKDSEEMILSMPMAPDVAIWGALLNACRI 592

Query: 264 LGDMESASKLFNEMPEKNP 282
             DME   ++   + E +P
Sbjct: 593 YKDMERGYRIGRIIKEIDP 611


>gi|357160830|ref|XP_003578890.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g04780-like [Brachypodium distachyon]
          Length = 631

 Score =  290 bits (741), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 171/551 (31%), Positives = 275/551 (49%), Gaps = 72/551 (13%)

Query: 59  LQQCAESKSLKLGKRVH---LHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIP 115
           LQ CA+ KSL +GK  H   +H  L       T   N LI++Y KCG +  AR VF    
Sbjct: 64  LQLCAKRKSLLVGKSCHGLAIHFGLV----TDTLTCNILINLYTKCGRNDCARLVF---- 115

Query: 116 VKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKV 175
                                      D M  R +VSWNTMI GY  SG   + LK +  
Sbjct: 116 ---------------------------DIMHVRSIVSWNTMIAGYTHSGEDVQALKLFSR 148

Query: 176 LRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGE 235
           + R     +EF+ +  +  C     +   +Q+H   L     SN  + ++I+D YAKC  
Sbjct: 149 MHREGTHMSEFTLSSTICACAAKYAINECKQLHTIALKLALDSNSFVGTAILDVYAKCNM 208

Query: 236 LSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRN 295
           + DA              W                  +F +MPE+  V+W++L AGY +N
Sbjct: 209 IKDA-------------CW------------------VFEKMPERTLVTWSSLFAGYVQN 237

Query: 296 GLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVM 355
           GL ++AL LF       +   + T S+ L ACAS+     G Q+H  +++  F  N  V 
Sbjct: 238 GLHEEALHLFRCAQREGVELTEFTLSAILSACASLALKIEGIQLHAVILKCGFHGNFFVA 297

Query: 356 SSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSV 415
           +SL+D+Y++CG +     +F   ++K N ++WN MI++ ++H +  +A+ LF  M +  +
Sbjct: 298 ASLVDVYARCGQIEKAYALFAYMEHK-NVVIWNAMIASFSRHAHSWEAMILFEKMQQLGI 356

Query: 416 KPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLM 475
            P+++T   +L+ C+H+GLV++G  YF  +  D  + PN  H++C++++L ++G +D+  
Sbjct: 357 FPNEVTYLSVLSVCSHAGLVEKGRHYFSLLMSDRTVEPNVLHYSCMVDVLGRSGKTDEAW 416

Query: 476 NQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALG 535
             L KMP+E  + +W +L G CR + NI + R   +QL    P +   H LLS++Y+A G
Sbjct: 417 ELLNKMPFEPTASMWGSLLGSCRNYNNIRLARIAAEQLFQLEPDNGGNHVLLSNVYAASG 476

Query: 536 KGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQMG 595
               V   R+ + +   KKE   SWIE + KVH F V +  HP    +Y+ LE++  +M 
Sbjct: 477 NWENVLMARKYLKDSGAKKEMGRSWIEAKGKVHVFVVGERKHPRITDIYNKLEEIYHEMR 536

Query: 596 EDA--PSLDAD 604
           + A   S++ D
Sbjct: 537 KFARRTSIECD 547



 Score = 59.3 bits (142), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 62/278 (22%), Positives = 105/278 (37%), Gaps = 74/278 (26%)

Query: 24  FLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQR 83
           F   +  G   EA+       + G+ L   TL+ IL  CA S +LK+ + + LH      
Sbjct: 231 FAGYVQNGLHEEALHLFRCAQREGVELTEFTLSAILSACA-SLALKI-EGIQLH------ 282

Query: 84  KTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFD 143
                       ++  KCG               N F   +++  YA  G ++ A  LF 
Sbjct: 283 ------------AVILKCGFH------------GNFFVAASLVDVYARCGQIEKAYALFA 318

Query: 144 NMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKL 203
            M  ++VV WN MI  +++     E +  ++ +++  I  NE ++  +L++C        
Sbjct: 319 YMEHKNVVIWNAMIASFSRHAHSWEAMILFEKMQQLGIFPNEVTYLSVLSVC-------- 370

Query: 204 TRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLF-----DETDARDVLTWTTMV 258
                                      +  G +   R  F     D T   +VL ++ MV
Sbjct: 371 ---------------------------SHAGLVEKGRHYFSLLMSDRTVEPNVLHYSCMV 403

Query: 259 SGYAKLGDMESASKLFNEMP-EKNPVSWTTLIAGYTRN 295
               + G  + A +L N+MP E     W +L+ G  RN
Sbjct: 404 DVLGRSGKTDEAWELLNKMPFEPTASMWGSLL-GSCRN 440


>gi|222612904|gb|EEE51036.1| hypothetical protein OsJ_31684 [Oryza sativa Japonica Group]
          Length = 637

 Score =  290 bits (741), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 166/556 (29%), Positives = 273/556 (49%), Gaps = 65/556 (11%)

Query: 39  SLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMY 98
           +LD +  R +         ++  CA  +SL   + +H HL  +Q    + FL N LI +Y
Sbjct: 51  TLDSVDARELAATPRLYHSLITACARYRSLDDARAIHAHLAGSQF-AGSVFLDNSLIHLY 109

Query: 99  FKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMII 158
            KCG+  DA                               R +FD M  RD+ SW ++I 
Sbjct: 110 CKCGAVADA-------------------------------RRVFDGMPARDMCSWTSLIA 138

Query: 159 GYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLS 218
           GYA++   +E L     + R     N F+FA +L          +  Q+H   +   +  
Sbjct: 139 GYAQNDMPDEALGLLPGMLRGRFKPNGFTFASLLKAAGASASSGIGEQIHALTVKYDWHD 198

Query: 219 NVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMP 278
           +V + S+++D YA+C                               G M+ A  +F+++ 
Sbjct: 199 DVYVGSALLDMYARC-------------------------------GRMDMAIAVFDQLE 227

Query: 279 EKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQ 338
            KN VSW  LIAG+ R G G+  L +F  M          T+SS   A A I +L+ GK 
Sbjct: 228 SKNGVSWNALIAGFARKGDGETTLLMFAEMQRNGFEATHFTYSSVFSAIAGIGALEQGKW 287

Query: 339 VHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHG 398
           VH  +I++  R +  V ++++DMY+K G + D R+VFD  D K++ + WN+M++A  Q+G
Sbjct: 288 VHAHMIKSGERLSAFVGNTILDMYAKSGSMIDARKVFDRVD-KKDVVTWNSMLTAFAQYG 346

Query: 399 YDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHH 458
              +A+  F +M +  V  ++IT   IL AC+H GLV+EG  YF+ M  +  + P  +H+
Sbjct: 347 LGREAVTHFEEMRKCGVHLNQITFLSILTACSHGGLVKEGKQYFD-MMKEYNLEPEIDHY 405

Query: 459 ACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNP 518
             +++LL +AG  +  +  + KMP +  + +W AL G CR+H N  +G+   D + + +P
Sbjct: 406 VTVVDLLGRAGLLNDALVFIFKMPMKPTAAVWGALLGSCRMHKNAKIGQFAADHVFELDP 465

Query: 519 QSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHP 578
             +    LL +IY++ G+     +VR+++     KKE A SW+EIEN VH F  +D  HP
Sbjct: 466 DDTGPPVLLYNIYASTGQWDAAARVRKMMKATGVKKEPACSWVEIENSVHMFVANDDTHP 525

Query: 579 MRDVLYSVLEQLAGQM 594
             + +Y   E+++ Q+
Sbjct: 526 RSEEIYKKWEEISIQI 541



 Score = 72.0 bits (175), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 43/168 (25%), Positives = 88/168 (52%), Gaps = 8/168 (4%)

Query: 18  NCLIQSFLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLH 77
           N LI  F     KG     +     + + G      T + +    A   +L+ GK VH H
Sbjct: 235 NALIAGF---ARKGDGETTLLMFAEMQRNGFEATHFTYSSVFSAIAGIGALEQGKWVHAH 291

Query: 78  LKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKH 137
           +  +  +  + F+ N ++ MY K GS +DARKVFD++  K++ ++N+ML+ +A  G+ + 
Sbjct: 292 MIKSGERL-SAFVGNTILDMYAKSGSMIDARKVFDRVDKKDVVTWNSMLTAFAQYGLGRE 350

Query: 138 ARNLFDNMAERDV----VSWNTMIIGYAKSGAVEEGLKFYKVLRRFSI 181
           A   F+ M +  V    +++ +++   +  G V+EG +++ +++ +++
Sbjct: 351 AVTHFEEMRKCGVHLNQITFLSILTACSHGGLVKEGKQYFDMMKEYNL 398


>gi|356561794|ref|XP_003549163.1| PREDICTED: pentatricopeptide repeat-containing protein At4g19191,
           mitochondrial-like [Glycine max]
          Length = 615

 Score =  290 bits (741), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 154/453 (33%), Positives = 252/453 (55%), Gaps = 33/453 (7%)

Query: 123 NNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSIS 182
           N+++  Y    +M  AR +FD M E+ ++SW TMI GY K G   E    +  ++  S+ 
Sbjct: 190 NSLMGMYVQFCLMDEARKVFDLMDEKSIISWTTMIGGYVKIGHAVEAYGLFYQMQHQSVG 249

Query: 183 CNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRL 242
            +   F  +++ C+++ +L L   VH  VL                   KCG        
Sbjct: 250 IDFVVFLNLISGCIQVRDLLLASSVHSLVL-------------------KCG-------- 282

Query: 243 FDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKAL 302
            +E D  + L    +++ YAK G++ SA ++F+ + EK+ +SWT++IAGY   G   +AL
Sbjct: 283 CNEKDPVENL----LITMYAKCGNLTSARRIFDLIIEKSMLSWTSMIAGYVHLGHPGEAL 338

Query: 303 ELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMY 362
           +LF RM+   IRPN  T ++ + ACA + SL  G+++  ++      S+  V +SLI MY
Sbjct: 339 DLFRRMIRTDIRPNGATLATVVSACADLGSLSIGQEIEEYIFLNGLESDQQVQTSLIHMY 398

Query: 363 SKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRS-SVKPDKIT 421
           SKCG +   R+VF+   +K+ + +W +MI++   HG   +AI LFH M  +  + PD I 
Sbjct: 399 SKCGSIVKAREVFERVTDKDLT-VWTSMINSYAIHGMGNEAISLFHKMTTAEGIMPDAIV 457

Query: 422 LAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKM 481
              +  AC+HSGLV+EGL YF+SM  D GI P  EH  CLI+LL + G  D  +N ++ M
Sbjct: 458 YTSVFLACSHSGLVEEGLKYFKSMQKDFGITPTVEHCTCLIDLLGRVGQLDLALNAIQGM 517

Query: 482 PYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVE 541
           P +  + +W  L   CRIHGN+++G     +L+D +P SS ++ L++++Y++LGK +   
Sbjct: 518 PPDVQAQVWGPLLSACRIHGNVELGELATVRLLDSSPGSSGSYVLMANLYTSLGKWKEAH 577

Query: 542 KVRQLINERQFKKEQAISWIEIENKVHAFSVSD 574
            +R  ++ +   KE   S +E+ +  H F+V +
Sbjct: 578 MMRNSMDGKGLVKESGWSQVEVTDTYHTFAVGN 610



 Score =  119 bits (299), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 91/374 (24%), Positives = 165/374 (44%), Gaps = 69/374 (18%)

Query: 148 RDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQV 207
           R + +WN MI     +G   + L  Y  +    +  N  ++  +L  C  L  ++    +
Sbjct: 9   RSLYTWNLMIRDSTNNGFFTQTLNIYSSMAHSGVHGNNLTYPLLLKACANLPSIQHGTML 68

Query: 208 HGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDM 267
           HG VL  GF ++  + +++VD Y+KC  ++                              
Sbjct: 69  HGHVLKLGFQADTFVQTALVDMYSKCSHVA------------------------------ 98

Query: 268 ESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCAC 327
            SA ++F+EMP+++ VSW  +++ Y+R     +AL L   M +L   P   TF S L   
Sbjct: 99  -SARQVFDEMPQRSVVSWNAMVSAYSRRSSMDQALSLLKEMWVLGFEPTASTFVSILSGY 157

Query: 328 ASIVSLKH---GKQVHGFLIRTNFRSNTIVMS-SLIDMYSKCGCLNDGRQVFDLTDNKEN 383
           +++ S +    GK +H  LI+       + ++ SL+ MY +   +++ R+VFDL D K +
Sbjct: 158 SNLDSFEFHLLGKSIHCCLIKLGIVYLEVSLANSLMGMYVQFCLMDEARKVFDLMDEK-S 216

Query: 384 SMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFE 443
            + W TMI    + G+  +A  LF+ M   SV  D +    +++ C              
Sbjct: 217 IISWTTMIGGYVKIGHAVEAYGLFYQMQHQSVGIDFVVFLNLISGCIQ------------ 264

Query: 444 SMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNI 503
               DL ++ +  H      L+ + GC+       EK P E+   L   ++  C   GN+
Sbjct: 265 --VRDL-LLASSVH-----SLVLKCGCN-------EKDPVEN---LLITMYAKC---GNL 303

Query: 504 DMGRKVVDQLIDQN 517
              R++ D +I+++
Sbjct: 304 TSARRIFDLIIEKS 317



 Score =  103 bits (256), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 73/276 (26%), Positives = 126/276 (45%), Gaps = 45/276 (16%)

Query: 58  ILQQCAESKSLKLGKRVH-LHLKL-TQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIP 115
           ++  C + + L L   VH L LK     K P   + N LI+MY KCG+   AR++FD I 
Sbjct: 258 LISGCIQVRDLLLASSVHSLVLKCGCNEKDP---VENLLITMYAKCGNLTSARRIFDLII 314

Query: 116 VKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKV 175
            K++ S+ +M++GY +LG    A +LF  M   D                          
Sbjct: 315 EKSMLSWTSMIAGYVHLGHPGEALDLFRRMIRTD-------------------------- 348

Query: 176 LRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGE 235
                I  N  + A +++ C  L  L + +++   + + G  S+  + +S++  Y+KCG 
Sbjct: 349 -----IRPNGATLATVVSACADLGSLSIGQEIEEYIFLNGLESDQQVQTSLIHMYSKCGS 403

Query: 236 LSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEK-----NPVSWTTLIA 290
           +  AR +F+    +D+  WT+M++ YA  G    A  LF++M        + + +T++  
Sbjct: 404 IVKAREVFERVTDKDLTVWTSMINSYAIHGMGNEAISLFHKMTTAEGIMPDAIVYTSVFL 463

Query: 291 GYTRNGLGQKALELFTRMMI-LRIRPNQHTFSSCLC 325
             + +GL ++ L+ F  M     I P   T   C C
Sbjct: 464 ACSHSGLVEEGLKYFKSMQKDFGITP---TVEHCTC 496


>gi|297596280|ref|NP_001042300.2| Os01g0197500 [Oryza sativa Japonica Group]
 gi|255672971|dbj|BAF04214.2| Os01g0197500 [Oryza sativa Japonica Group]
          Length = 906

 Score =  290 bits (741), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 173/564 (30%), Positives = 300/564 (53%), Gaps = 29/564 (5%)

Query: 54  TLAFILQQCAESKSLKLGKRVH---LHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKV 110
           TL   L+  A   S ++   VH   LHL L  +      ++  +++ Y + G   DAR+V
Sbjct: 350 TLPLALRAAA---SPRVASAVHAHALHLGLHAQHD----VAGQILAAYSRLGRAADARRV 402

Query: 111 FDKIPV-KNLFSYNNMLSGYANLGMMKHARNLFDNMA----ERDVVSWNTMIIGYAKSGA 165
           FD +P  +  F +N ++S Y++      AR+ F  MA      D V+W  ++  +A+SG 
Sbjct: 403 FDAMPPGRTTFHWNALISAYSSGCDPDAARDAFARMAAAGARPDAVTWTALLSAHARSGK 462

Query: 166 VEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTR--QVHGQVLVTGFLSN-VVI 222
             + L+ +  ++R     N  S A  L+ C    +L L +   +HG  +V G +   + +
Sbjct: 463 HADVLQLFGEMQRSGCEGNAESMAVALSACPYAGDLALAKGKAIHGCGVVKGLMHGYLFV 522

Query: 223 SSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPE--- 279
           ++S++  Y K GE+ DA++ F +  A++ +TW T+++ YA     + A  +  +M +   
Sbjct: 523 TNSLICMYGKLGEMDDAKKAFRDATAKNTVTWNTLITSYAAARLCDKALDVLAQMEQIGG 582

Query: 280 ---KNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHG 336
               N VSW+ +I G+  +G   +ALELF RM    + PN  T ++ L AC  +++L+ G
Sbjct: 583 TVAPNVVSWSAVIGGFASSGDTDRALELFRRMQQQWLSPNVVTMATVLSACVDLLALRLG 642

Query: 337 KQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQ 396
           +++HG  ++     +++V + LI+MY+KCG ++  R+VFD    ++  + WN+M++    
Sbjct: 643 RELHGHAMKAELDRHSLVENGLINMYAKCGKVSGARKVFDGMKTRD-LISWNSMLAGYGM 701

Query: 397 HGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQE 456
           HG  ++A+ LF DM  ++V+PD +T   +L+AC H+G V EG   F+ M     I P+ E
Sbjct: 702 HGLCDEALALFTDMAGATVEPDGVTFVAVLSACGHAGRVTEGRRLFDRMVRAHKISPSME 761

Query: 457 HHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQ 516
           H+ C++ LL +AG        +E MP   D  +W AL   CRIHG+  M    +  ++  
Sbjct: 762 HYTCMVYLLGRAGLLRDASELVETMPVRPDLCVWGALLNSCRIHGDAAMAEATIANVLQS 821

Query: 517 NPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAF---SVS 573
             QS+  H L++++Y+  G     +KVR +  E   +K    SWIE++NKV AF   S  
Sbjct: 822 EDQSTGNHMLITNLYAMCGMWDESKKVRVMTKEAGLRKNPGQSWIEVDNKVVAFAAGSAP 881

Query: 574 DSLHPMRDVLYSVLEQLAGQMGED 597
            +L    DV + +L+ L  +M ++
Sbjct: 882 PNLTGAEDV-FGMLDDLYAEMEDE 904



 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 70/261 (26%), Positives = 118/261 (45%), Gaps = 44/261 (16%)

Query: 29  SKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTT 88
           S G    A+     + Q+ +     T+A +L  C +  +L+LG+ +H H  +       +
Sbjct: 600 SSGDTDRALELFRRMQQQWLSPNVVTMATVLSACVDLLALRLGRELHGH-AMKAELDRHS 658

Query: 89  FLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMA-- 146
            + N LI+MY KCG    ARKVFD +  ++L S+N+ML+GY   G+   A  LF +MA  
Sbjct: 659 LVENGLINMYAKCGKVSGARKVFDGMKTRDLISWNSMLAGYGMHGLCDEALALFTDMAGA 718

Query: 147 --ERDVVSWNTMIIGYAKSGAVEEGLKFY-KVLRRFSISCNEFSF---------AGILTI 194
             E D V++  ++     +G V EG + + +++R   IS +   +         AG+L  
Sbjct: 719 TVEPDGVTFVAVLSACGHAGRVTEGRRLFDRMVRAHKISPSMEHYTCMVYLLGRAGLLRD 778

Query: 195 CVKLEELKLTR-------------QVHGQ-VLVTGFLSNVVISSS--------IVDAYAK 232
             +L E    R             ++HG   +    ++NV+ S          I + YA 
Sbjct: 779 ASELVETMPVRPDLCVWGALLNSCRIHGDAAMAEATIANVLQSEDQSTGNHMLITNLYAM 838

Query: 233 CGELSDARRLFDETDARDVLT 253
           CG       ++DE+    V+T
Sbjct: 839 CG-------MWDESKKVRVMT 852


>gi|359495599|ref|XP_003635033.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59200, chloroplastic-like [Vitis vinifera]
          Length = 650

 Score =  290 bits (741), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 152/450 (33%), Positives = 248/450 (55%), Gaps = 2/450 (0%)

Query: 135 MKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTI 194
           + +A  +F      +V  +  +I G+  SG   E ++ Y  +   SI  + +  A IL  
Sbjct: 97  IDYASRIFQYTHNPNVYLYTALIDGFVSSGNYLEAIQLYSRMLHESILPDNYLMASILKA 156

Query: 195 CVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTW 254
           C     L+  R+VH + L  GF SN ++   I++ Y KCGEL DARR+F+E    DV+  
Sbjct: 157 CGSQLALREGREVHSRALKLGFSSNRLVRLRIMELYGKCGELGDARRVFEEM-PEDVVAS 215

Query: 255 TTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIR 314
           T M+S Y+  G +E A  +F+ +  K+ V WT +I G+ RN    +ALE F  M    +R
Sbjct: 216 TVMISSYSDQGLVEEAGAVFSRVRRKDTVCWTAMIDGFVRNEETNRALEAFRGMQGENVR 275

Query: 315 PNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQV 374
           PN+ T    L AC+ + +L+ G+ VH ++ +     N  V ++LI+MYS+CG +++ + V
Sbjct: 276 PNEFTIVCVLSACSQLGALEIGRWVHSYMRKFEIELNLFVGNALINMYSRCGSIDEAQTV 335

Query: 375 FDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGL 434
           FD   ++ + + +NTMIS L+ +G   QAI LF  MV   ++P  +T   +LNAC+H GL
Sbjct: 336 FDEMKDR-DVITYNTMISGLSMNGKSRQAIELFRVMVGRRLRPTNVTFVGVLNACSHGGL 394

Query: 435 VQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALH 494
           V  G   F SM  D  + P  EH+ C+++LL + G  ++  + +  M    D  +   L 
Sbjct: 395 VDFGFEIFHSMARDYRVEPQIEHYGCMVDLLGRVGRLEEAYDLIRTMKMTPDHIMLGTLL 454

Query: 495 GVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKK 554
             C++H N+++G +V  +L D+    S T+ LLS +Y++ GK +   +VR  + E   +K
Sbjct: 455 SACKMHKNLELGEQVAKELEDRGQADSGTYVLLSHVYASSGKWKEAAQVRAKMKEAGMQK 514

Query: 555 EQAISWIEIENKVHAFSVSDSLHPMRDVLY 584
           E   S IE+ N++H F + D  HP ++ +Y
Sbjct: 515 EPGCSSIEVNNEIHEFLLGDLRHPQKERIY 544



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 97/402 (24%), Positives = 187/402 (46%), Gaps = 47/402 (11%)

Query: 4   NFSPRGINRKNLPNNCLIQSFL-SLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQC 62
           +++ R     + PN  L  + +   +S G   EAI     +    I      +A IL+ C
Sbjct: 98  DYASRIFQYTHNPNVYLYTALIDGFVSSGNYLEAIQLYSRMLHESILPDNYLMASILKAC 157

Query: 63  AESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLI-----SMYFKCGSDVDARKVFDKIPVK 117
               +L+ G+ VH       R     F SN L+      +Y KCG   DAR+VF+++P +
Sbjct: 158 GSQLALREGREVH------SRALKLGFSSNRLVRLRIMELYGKCGELGDARRVFEEMP-E 210

Query: 118 NLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLR 177
           ++ +   M+S Y++ G+++ A  +F  +  +D V W  MI G+ ++      L+ ++ ++
Sbjct: 211 DVVASTVMISSYSDQGLVEEAGAVFSRVRRKDTVCWTAMIDGFVRNEETNRALEAFRGMQ 270

Query: 178 RFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELS 237
             ++  NEF+   +L+ C +L  L++ R VH  +       N+ + +++++ Y++CG + 
Sbjct: 271 GENVRPNEFTIVCVLSACSQLGALEIGRWVHSYMRKFEIELNLFVGNALINMYSRCGSID 330

Query: 238 DARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGL 297
           +A+ +FDE   RDV+T+ TM+S                               G + NG 
Sbjct: 331 EAQTVFDEMKDRDVITYNTMIS-------------------------------GLSMNGK 359

Query: 298 GQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIV--M 355
            ++A+ELF  M+  R+RP   TF   L AC+    +  G ++   + R ++R    +   
Sbjct: 360 SRQAIELFRVMVGRRLRPTNVTFVGVLNACSHGGLVDFGFEIFHSMAR-DYRVEPQIEHY 418

Query: 356 SSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQH 397
             ++D+  + G L +   +        + ++  T++SA   H
Sbjct: 419 GCMVDLLGRVGRLEEAYDLIRTMKMTPDHIMLGTLLSACKMH 460



 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 79/348 (22%), Positives = 157/348 (45%), Gaps = 45/348 (12%)

Query: 207 VHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGD 266
           +H Q++  G   +  +   ++ + +KC  +  A R+F  T   +V  +T ++ G+   G+
Sbjct: 68  IHAQLIRNGHSQDPFMVFELLRSCSKCHAIDYASRIFQYTHNPNVYLYTALIDGFVSSGN 127

Query: 267 MESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCA 326
                                            +A++L++RM+   I P+ +  +S L A
Sbjct: 128 Y-------------------------------LEAIQLYSRMLHESILPDNYLMASILKA 156

Query: 327 CASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSML 386
           C S ++L+ G++VH   ++  F SN +V   ++++Y KCG L D R+VF+  +  E+ + 
Sbjct: 157 CGSQLALREGREVHSRALKLGFSSNRLVRLRIMELYGKCGELGDARRVFE--EMPEDVVA 214

Query: 387 WNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMT 446
              MIS+ +  G  E+A  +F  + R     D +    +++    +      L  F  M 
Sbjct: 215 STVMISSYSDQGLVEEAGAVFSRVRRK----DTVCWTAMIDGFVRNEETNRALEAFRGMQ 270

Query: 447 HDLGIIPNQEHHACLIELLAQAGCSD---QLMNQLEKMPYEHDSYLWNALHGVCRIHGNI 503
            +  + PN+    C++   +Q G  +    + + + K   E + ++ NAL  +    G+I
Sbjct: 271 GE-NVRPNEFTIVCVLSACSQLGALEIGRWVHSYMRKFEIELNLFVGNALINMYSRCGSI 329

Query: 504 DMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGR-LVEKVRQLINER 550
           D  + V D++ D++     T+  + S  S  GK R  +E  R ++  R
Sbjct: 330 DEAQTVFDEMKDRD---VITYNTMISGLSMNGKSRQAIELFRVMVGRR 374


>gi|147864762|emb|CAN84062.1| hypothetical protein VITISV_010661 [Vitis vinifera]
          Length = 641

 Score =  290 bits (741), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 161/472 (34%), Positives = 266/472 (56%), Gaps = 32/472 (6%)

Query: 123 NNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSIS 182
           N +++ Y+  G+++ AR LFD M  R +VSWNTM+  + ++G  E+ L  +  +++  IS
Sbjct: 86  NMLMNMYSKCGLVESARKLFDEMPVRSLVSWNTMVGSHTQNGDSEKALVLFMQMQKEGIS 145

Query: 183 CNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRL 242
           C+EF+ + ++  C     +   +Q+HG  L T   SNV + ++++D YA           
Sbjct: 146 CSEFTVSSVVCACAAKCCVFECKQLHGFALKTALDSNVFVGTALLDVYA----------- 194

Query: 243 FDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKAL 302
                               K G ++ AS +F  MPE++ V+W++++AGY +N L ++AL
Sbjct: 195 --------------------KCGLVKDASLVFECMPERSDVTWSSMVAGYVQNELYEEAL 234

Query: 303 ELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMY 362
            LF R   + +  NQ T SS L ACA+  +L  GKQV   L +T   SN  V+SSLIDMY
Sbjct: 235 VLFHRAQAMGLEHNQFTISSALSACAARAALIEGKQVQAVLCKTGIGSNIFVISSLIDMY 294

Query: 363 SKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITL 422
           +KCG + +   VF   + K N +LWN M+S  ++H    +A+  F  M +  + P++IT 
Sbjct: 295 AKCGIIEEAYIVFSSVEEK-NVVLWNAMLSGFSRHVRSLEAMIYFEKMQQMGICPNEITY 353

Query: 423 AVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMP 482
             +L AC+H GLV++G  YF+ M     + PN  H++C++++L +AG   +  + +++MP
Sbjct: 354 ISVLTACSHLGLVEKGRKYFDLMIRVHNVSPNVLHYSCMVDILGRAGLLHEAKDLIDRMP 413

Query: 483 YEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEK 542
           ++  + +W +L   CRI+ N++        L +  P ++  H LLS+IY+A  +   V +
Sbjct: 414 FDATASMWGSLLASCRIYRNLEXAEVAAKHLFEIEPHNAGNHVLLSNIYAANNRWEEVAR 473

Query: 543 VRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQM 594
            R L+ E + KKE+  SWIEI++KVH+F V +  HP    +Y  LE L G+M
Sbjct: 474 ARNLLKESKAKKERGKSWIEIKHKVHSFMVGERNHPRIVEIYLKLEDLVGEM 525



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 69/277 (24%), Positives = 134/277 (48%), Gaps = 32/277 (11%)

Query: 118 NLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLR 177
           N+F    +L  YA  G++K A  +F+ M ER  V+W++M+ GY ++   EE L  +   +
Sbjct: 182 NVFVGTALLDVYAKCGLVKDASLVFECMPERSDVTWSSMVAGYVQNELYEEALVLFHRAQ 241

Query: 178 RFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELS 237
              +  N+F+ +  L+ C     L   +QV   +  TG  SN+ + SS++D YAKCG + 
Sbjct: 242 AMGLEHNQFTISSALSACAARAALIEGKQVQAVLCKTGIGSNIFVISSLIDMYAKCGIIE 301

Query: 238 DARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGL 297
           +A  +F   + ++V+ W  M+S                               G++R+  
Sbjct: 302 EAYIVFSSVEEKNVVLWNAMLS-------------------------------GFSRHVR 330

Query: 298 GQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRT-NFRSNTIVMS 356
             +A+  F +M  + I PN+ T+ S L AC+ +  ++ G++    +IR  N   N +  S
Sbjct: 331 SLEAMIYFEKMQQMGICPNEITYISVLTACSHLGLVEKGRKYFDLMIRVHNVSPNVLHYS 390

Query: 357 SLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISA 393
            ++D+  + G L++ + + D       + +W +++++
Sbjct: 391 CMVDILGRAGLLHEAKDLIDRMPFDATASMWGSLLAS 427



 Score = 55.5 bits (132), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 54/213 (25%), Positives = 92/213 (43%), Gaps = 38/213 (17%)

Query: 89  FLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAER 148
           F+ + LI MY KCG   +A  VF  +  KN+  +N MLSG++     +H R+L       
Sbjct: 285 FVISSLIDMYAKCGIIEEAYIVFSSVEEKNVVLWNAMLSGFS-----RHVRSL------- 332

Query: 149 DVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVH 208
                              E + +++ +++  I  NE ++  +LT C  L  ++  R+  
Sbjct: 333 -------------------EAMIYFEKMQQMGICPNEITYISVLTACSHLGLVEKGRKYF 373

Query: 209 GQVL-VTGFLSNVVISSSIVDAYAKCGELSDARRLFDET--DARDVLTWTTMVSG---YA 262
             ++ V     NV+  S +VD   + G L +A+ L D    DA   + W ++++    Y 
Sbjct: 374 DLMIRVHNVSPNVLHYSCMVDILGRAGLLHEAKDLIDRMPFDATASM-WGSLLASCRIYR 432

Query: 263 KLGDMESASKLFNEMPEKNPVSWTTLIAGYTRN 295
            L   E A+K   E+   N  +   L   Y  N
Sbjct: 433 NLEXAEVAAKHLFEIEPHNAGNHVLLSNIYAAN 465


>gi|115486527|ref|NP_001068407.1| Os11g0661000 [Oryza sativa Japonica Group]
 gi|108864631|gb|ABG22570.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113645629|dbj|BAF28770.1| Os11g0661000 [Oryza sativa Japonica Group]
 gi|215694601|dbj|BAG89792.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|215701272|dbj|BAG92696.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 610

 Score =  290 bits (741), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 154/472 (32%), Positives = 262/472 (55%), Gaps = 3/472 (0%)

Query: 125 MLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYK-VLRRFSISC 183
           ++S YA   ++  A +LFD    RD+  +++++   + S + E  L   + +L   ++  
Sbjct: 44  LVSAYAKSRLLPDALHLFDETPRRDIYIYSSLLTAVSHSASPELALPILRCMLSADALHP 103

Query: 184 NEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLF 243
           + F  + + ++  +L   +L RQ+H   +V+ +  + V+ SS+VD Y KCG   D R++F
Sbjct: 104 DHFVISSVASVFARLRSRRLGRQLHAHFVVSPYNGDDVVKSSLVDMYCKCGSPDDGRKVF 163

Query: 244 DETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALE 303
           D   A++ + WT +VSGYA  G  E A +LF  MP +N  +WT LI+G    G    A+E
Sbjct: 164 DSMSAKNSVVWTALVSGYASNGRSEEALQLFRSMPGRNLFAWTALISGLVNTGESVGAVE 223

Query: 304 LFTRMMILRIR-PNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMY 362
           LF  M    +R  +    S  +   A + +   G+Q+HG  +R  F SN IV ++LIDMY
Sbjct: 224 LFVEMRRDGVRIDDAFVLSIVIGGSADLAAFVLGRQLHGSTMRLGFLSNMIVGNALIDMY 283

Query: 363 SKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITL 422
           SKC  +   R+VF+    + + + W TM+    QHG  E+A+ L+  MV +  KP+++T 
Sbjct: 284 SKCSDILSAREVFEGITFR-DVISWTTMVVGEAQHGRAEEALALYDRMVLAGAKPNEVTF 342

Query: 423 AVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMP 482
             ++ AC+H+GLVQ+G   FESM ++ GI P  +H+ C ++LL+++G   +    +  MP
Sbjct: 343 VGLIYACSHAGLVQKGRQLFESMKNEYGITPRLQHYTCYLDLLSRSGHLLEAEELMTTMP 402

Query: 483 YEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEK 542
           YE D   W AL   C  + + +M  ++ D+L++  P+ S+T+ LLS++Y+  GK   V K
Sbjct: 403 YEPDEATWGALLSACTKYKDAEMCIRISDKLLELRPKDSSTYILLSNVYAVNGKWDSVAK 462

Query: 543 VRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQM 594
           VR+ +   + +KE   SWIE   +   F   +    +R+ +   LE++  +M
Sbjct: 463 VRKCMIGLEIRKEPGYSWIEAGREFRLFHAGEVPLDVREEIMVFLEEMVLEM 514



 Score =  154 bits (388), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 97/349 (27%), Positives = 167/349 (47%), Gaps = 40/349 (11%)

Query: 63  AESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSY 122
           A  +S +LG+++H H  ++         S+ L+ MY KCGS  D RKVFD +  KN   +
Sbjct: 116 ARLRSRRLGRQLHAHFVVSPYNGDDVVKSS-LVDMYCKCGSPDDGRKVFDSMSAKNSVVW 174

Query: 123 NNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSIS 182
             ++SGYA+ G  + A  LF +M  R++ +W  +I G   +G     ++ +  +RR  + 
Sbjct: 175 TALVSGYASNGRSEEALQLFRSMPGRNLFAWTALISGLVNTGESVGAVELFVEMRRDGVR 234

Query: 183 CNE-FSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARR 241
            ++ F  + ++     L    L RQ+HG  +  GFLSN+++ ++++D Y+KC ++  AR 
Sbjct: 235 IDDAFVLSIVIGGSADLAAFVLGRQLHGSTMRLGFLSNMIVGNALIDMYSKCSDILSARE 294

Query: 242 LFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEM----PEKNPVSWTTLIAGYTRNGL 297
           +F+    RDV++WTTMV G A+ G  E A  L++ M     + N V++  LI   +  GL
Sbjct: 295 VFEGITFRDVISWTTMVVGEAQHGRAEEALALYDRMVLAGAKPNEVTFVGLIYACSHAGL 354

Query: 298 GQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSS 357
            QK  +LF  M                            K  +G   R          + 
Sbjct: 355 VQKGRQLFESM----------------------------KNEYGITPRLQH------YTC 380

Query: 358 LIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRL 406
            +D+ S+ G L +  ++      + +   W  ++SA T++   E  IR+
Sbjct: 381 YLDLLSRSGHLLEAEELMTTMPYEPDEATWGALLSACTKYKDAEMCIRI 429



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 60/207 (28%), Positives = 97/207 (46%), Gaps = 31/207 (14%)

Query: 204 TRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAK 263
            R +H ++L  G   +    +++V AYAK   L DA  LFDET  RD+  ++++++  + 
Sbjct: 22  VRGMHARILKEGLAHHPPNPAALVSAYAKSRLLPDALHLFDETPRRDIYIYSSLLTAVSH 81

Query: 264 LGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSC 323
               E A  +   M                   L   AL            P+    SS 
Sbjct: 82  SASPELALPILRCM-------------------LSADALH-----------PDHFVISSV 111

Query: 324 LCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKEN 383
               A + S + G+Q+H   + + +  + +V SSL+DMY KCG  +DGR+VFD    K N
Sbjct: 112 ASVFARLRSRRLGRQLHAHFVVSPYNGDDVVKSSLVDMYCKCGSPDDGRKVFDSMSAK-N 170

Query: 384 SMLWNTMISALTQHGYDEQAIRLFHDM 410
           S++W  ++S    +G  E+A++LF  M
Sbjct: 171 SVVWTALVSGYASNGRSEEALQLFRSM 197


>gi|108864632|gb|ABG22571.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 692

 Score =  290 bits (741), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 154/472 (32%), Positives = 262/472 (55%), Gaps = 3/472 (0%)

Query: 125 MLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYK-VLRRFSISC 183
           ++S YA   ++  A +LFD    RD+  +++++   + S + E  L   + +L   ++  
Sbjct: 126 LVSAYAKSRLLPDALHLFDETPRRDIYIYSSLLTAVSHSASPELALPILRCMLSADALHP 185

Query: 184 NEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLF 243
           + F  + + ++  +L   +L RQ+H   +V+ +  + V+ SS+VD Y KCG   D R++F
Sbjct: 186 DHFVISSVASVFARLRSRRLGRQLHAHFVVSPYNGDDVVKSSLVDMYCKCGSPDDGRKVF 245

Query: 244 DETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALE 303
           D   A++ + WT +VSGYA  G  E A +LF  MP +N  +WT LI+G    G    A+E
Sbjct: 246 DSMSAKNSVVWTALVSGYASNGRSEEALQLFRSMPGRNLFAWTALISGLVNTGESVGAVE 305

Query: 304 LFTRMMILRIR-PNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMY 362
           LF  M    +R  +    S  +   A + +   G+Q+HG  +R  F SN IV ++LIDMY
Sbjct: 306 LFVEMRRDGVRIDDAFVLSIVIGGSADLAAFVLGRQLHGSTMRLGFLSNMIVGNALIDMY 365

Query: 363 SKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITL 422
           SKC  +   R+VF+    + + + W TM+    QHG  E+A+ L+  MV +  KP+++T 
Sbjct: 366 SKCSDILSAREVFEGITFR-DVISWTTMVVGEAQHGRAEEALALYDRMVLAGAKPNEVTF 424

Query: 423 AVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMP 482
             ++ AC+H+GLVQ+G   FESM ++ GI P  +H+ C ++LL+++G   +    +  MP
Sbjct: 425 VGLIYACSHAGLVQKGRQLFESMKNEYGITPRLQHYTCYLDLLSRSGHLLEAEELMTTMP 484

Query: 483 YEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEK 542
           YE D   W AL   C  + + +M  ++ D+L++  P+ S+T+ LLS++Y+  GK   V K
Sbjct: 485 YEPDEATWGALLSACTKYKDAEMCIRISDKLLELRPKDSSTYILLSNVYAVNGKWDSVAK 544

Query: 543 VRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQM 594
           VR+ +   + +KE   SWIE   +   F   +    +R+ +   LE++  +M
Sbjct: 545 VRKCMIGLEIRKEPGYSWIEAGREFRLFHAGEVPLDVREEIMVFLEEMVLEM 596



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 97/349 (27%), Positives = 167/349 (47%), Gaps = 40/349 (11%)

Query: 63  AESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSY 122
           A  +S +LG+++H H  ++         S+ L+ MY KCGS  D RKVFD +  KN   +
Sbjct: 198 ARLRSRRLGRQLHAHFVVSPYNGDDVVKSS-LVDMYCKCGSPDDGRKVFDSMSAKNSVVW 256

Query: 123 NNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSIS 182
             ++SGYA+ G  + A  LF +M  R++ +W  +I G   +G     ++ +  +RR  + 
Sbjct: 257 TALVSGYASNGRSEEALQLFRSMPGRNLFAWTALISGLVNTGESVGAVELFVEMRRDGVR 316

Query: 183 CNE-FSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARR 241
            ++ F  + ++     L    L RQ+HG  +  GFLSN+++ ++++D Y+KC ++  AR 
Sbjct: 317 IDDAFVLSIVIGGSADLAAFVLGRQLHGSTMRLGFLSNMIVGNALIDMYSKCSDILSARE 376

Query: 242 LFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEM----PEKNPVSWTTLIAGYTRNGL 297
           +F+    RDV++WTTMV G A+ G  E A  L++ M     + N V++  LI   +  GL
Sbjct: 377 VFEGITFRDVISWTTMVVGEAQHGRAEEALALYDRMVLAGAKPNEVTFVGLIYACSHAGL 436

Query: 298 GQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSS 357
            QK  +LF  M                            K  +G   R          + 
Sbjct: 437 VQKGRQLFESM----------------------------KNEYGITPRLQH------YTC 462

Query: 358 LIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRL 406
            +D+ S+ G L +  ++      + +   W  ++SA T++   E  IR+
Sbjct: 463 YLDLLSRSGHLLEAEELMTTMPYEPDEATWGALLSACTKYKDAEMCIRI 511



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 60/207 (28%), Positives = 97/207 (46%), Gaps = 31/207 (14%)

Query: 204 TRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAK 263
            R +H ++L  G   +    +++V AYAK   L DA  LFDET  RD+  ++++++  + 
Sbjct: 104 VRGMHARILKEGLAHHPPNPAALVSAYAKSRLLPDALHLFDETPRRDIYIYSSLLTAVSH 163

Query: 264 LGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSC 323
               E A  +   M                   L   AL            P+    SS 
Sbjct: 164 SASPELALPILRCM-------------------LSADALH-----------PDHFVISSV 193

Query: 324 LCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKEN 383
               A + S + G+Q+H   + + +  + +V SSL+DMY KCG  +DGR+VFD    K N
Sbjct: 194 ASVFARLRSRRLGRQLHAHFVVSPYNGDDVVKSSLVDMYCKCGSPDDGRKVFDSMSAK-N 252

Query: 384 SMLWNTMISALTQHGYDEQAIRLFHDM 410
           S++W  ++S    +G  E+A++LF  M
Sbjct: 253 SVVWTALVSGYASNGRSEEALQLFRSM 279


>gi|28392910|gb|AAO41891.1| putative selenium-binding protein [Arabidopsis thaliana]
          Length = 630

 Score =  290 bits (741), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 167/559 (29%), Positives = 283/559 (50%), Gaps = 69/559 (12%)

Query: 20  LIQSFLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLK 79
           L+  F  L  +  L  A+ ++D L   G+   + T + +++ C  ++++  G  +  HL 
Sbjct: 29  LLSEFTRLCYQRDLPRAMKAMDSLQSHGLWADSATYSELIKCCISNRAVHEGNLICRHLY 88

Query: 80  LTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHAR 139
               + P  FL N LI+MY K                                 ++  A 
Sbjct: 89  FNGHR-PMMFLVNVLINMYVK-------------------------------FNLLNDAH 116

Query: 140 NLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLE 199
            LFD M +R+V+SW TMI  Y+K    ++ L+   ++ R ++  N ++++ +L  C  + 
Sbjct: 117 QLFDQMPQRNVISWTTMISAYSKCKIHQKALELLVLMLRDNVRPNVYTYSSVLRSCNGMS 176

Query: 200 ELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVS 259
           ++   R +H  ++  G  S+V + S+++D +                             
Sbjct: 177 DV---RMLHCGIIKEGLESDVFVRSALIDVF----------------------------- 204

Query: 260 GYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHT 319
             AKLG+ E A  +F+EM   + + W ++I G+ +N     ALELF RM        Q T
Sbjct: 205 --AKLGEPEDALSVFDEMVTGDAIVWNSIIGGFAQNSRSDVALELFKRMKRAGFIAEQAT 262

Query: 320 FSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTD 379
            +S L AC  +  L+ G Q H  +++  +  + I+ ++L+DMY KCG L D  +VF+   
Sbjct: 263 LTSVLRACTGLALLELGMQAHVHIVK--YDQDLILNNALVDMYCKCGSLEDALRVFNQMK 320

Query: 380 NKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGL 439
            ++  + W+TMIS L Q+GY ++A++LF  M  S  KP+ IT+  +L AC+H+GL+++G 
Sbjct: 321 ERD-VITWSTMISGLAQNGYSQEALKLFERMKSSGTKPNYITIVGVLFACSHAGLLEDGW 379

Query: 440 TYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRI 499
            YF SM    GI P +EH+ C+I+LL +AG  D  +  L +M  E D+  W  L G CR+
Sbjct: 380 YYFRSMKKLYGIDPVREHYGCMIDLLGKAGKLDDAVKLLNEMECEPDAVTWRTLLGACRV 439

Query: 500 HGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAIS 559
             N+ +      ++I  +P+ + T+ LLS+IY+   K   VE++R  + +R  KKE   S
Sbjct: 440 QRNMVLAEYAAKKVIALDPEDAGTYTLLSNIYANSQKWDSVEEIRTRMRDRGIKKEPGCS 499

Query: 560 WIEIENKVHAFSVSDSLHP 578
           WIE+  ++HAF + D+ HP
Sbjct: 500 WIEVNKQIHAFIIGDNSHP 518



 Score = 79.7 bits (195), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 78/314 (24%), Positives = 132/314 (42%), Gaps = 62/314 (19%)

Query: 54  TLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDK 113
           TL  +L+ C     L+LG + H+H+    +      L+N L+ MY KCGS  DA +V   
Sbjct: 262 TLTSVLRACTGLALLELGMQAHVHI---VKYDQDLILNNALVDMYCKCGSLEDALRV--- 315

Query: 114 IPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFY 173
                                       F+ M ERDV++W+TMI G A++G  +E LK +
Sbjct: 316 ----------------------------FNQMKERDVITWSTMISGLAQNGYSQEALKLF 347

Query: 174 KVLRRFSISCNEFSFAGILTICVK---LEE----LKLTRQVHGQVLVTGFLSNVVISSSI 226
           + ++      N  +  G+L  C     LE+     +  ++++G   V            +
Sbjct: 348 ERMKSSGTKPNYITIVGVLFACSHAGLLEDGWYYFRSMKKLYGIDPVREHY------GCM 401

Query: 227 VDAYAKCGELSDARRLFDETDAR-DVLTWTTMVSGYAKLGDM---ESASKLFNEMPEKNP 282
           +D   K G+L DA +L +E +   D +TW T++       +M   E A+K    +  ++ 
Sbjct: 402 IDLLGKAGKLDDAVKLLNEMECEPDAVTWRTLLGACRVQRNMVLAEYAAKKVIALDPEDA 461

Query: 283 VSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGF 342
            ++T L   Y  +       E+ TRM    I+            C+ I   +  KQ+H F
Sbjct: 462 GTYTLLSNIYANSQKWDSVEEIRTRMRDRGIKKEP--------GCSWI---EVNKQIHAF 510

Query: 343 LIRTNFRSNTIVMS 356
           +I  N     + +S
Sbjct: 511 IIGDNSHPQIVEVS 524


>gi|212720716|ref|NP_001132746.1| uncharacterized protein LOC100194233 [Zea mays]
 gi|194695290|gb|ACF81729.1| unknown [Zea mays]
          Length = 539

 Score =  290 bits (741), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 150/471 (31%), Positives = 249/471 (52%), Gaps = 32/471 (6%)

Query: 120 FSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRF 179
            S+N ++ GY   G ++ AR LFD M  R+V +WN M+ G   SG  EE L F+  +RR 
Sbjct: 1   MSWNILIGGYVKNGDLETARKLFDEMPARNVATWNAMVAGLTNSGLNEESLGFFFAMRRE 60

Query: 180 SISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDA 239
            +  +E+    +   C  L ++   RQVH  V+ +G   ++ + SS+   Y +CG L D 
Sbjct: 61  GMQPDEYGLGSLFRCCAGLRDVVSGRQVHAYVVRSGLDRDMCVGSSLAHMYMRCGFLRD- 119

Query: 240 RRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQ 299
                               G A L            +P  N VS  T I+G T+NG  +
Sbjct: 120 --------------------GEAAL----------RALPSLNIVSCNTTISGRTQNGDAE 149

Query: 300 KALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLI 359
            ALE F  M    +  N  TF S + +C+ + +L  G+Q+H   I+T       VM+SL+
Sbjct: 150 GALEFFCLMRGAGVEANAVTFVSAVTSCSDLAALAQGQQIHALAIKTGVDKVVPVMTSLV 209

Query: 360 DMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDK 419
            MYS+CGCL D  +V  L  +  + +L + MISA   HG+ ++A+ LF  M+ +  +P++
Sbjct: 210 HMYSRCGCLGDSERVC-LEYSGTDLVLCSAMISAYGFHGHGQKAVGLFKQMMAAGAEPNE 268

Query: 420 ITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLE 479
           +T   +L AC+HSGL  EG+  FE MT   G+ P+ +H+ C+++LL ++GC ++  + + 
Sbjct: 269 VTFLTLLYACSHSGLKDEGMNCFELMTKTYGLQPSVKHYTCIVDLLGRSGCLNEAEDLIL 328

Query: 480 KMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRL 539
            MP + D  +W  L   C+     DM  ++ +++I+ +P  SA++ LLS+I +   +   
Sbjct: 329 SMPVQPDGVIWKTLLSACKTQKKFDMAERIAERVIELDPHDSASYVLLSNIRATSSRWED 388

Query: 540 VEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQL 590
           V KVR+ + E+  +KE  +SW+E++ ++H F   D  H  +  +   LE++
Sbjct: 389 VSKVRETMREQNVRKEPGVSWVELKGQIHQFCTGDESHSRQREIVECLEEM 439



 Score = 48.9 bits (115), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 63/293 (21%), Positives = 127/293 (43%), Gaps = 22/293 (7%)

Query: 13  KNLPNNCLIQSFLSLISKGQLSEAISSLDLLA-QRGIRLPAETLAFI--LQQCAESKSLK 69
           + LP+  ++    ++  + Q  +A  +L+     RG  + A  + F+  +  C++  +L 
Sbjct: 125 RALPSLNIVSCNTTISGRTQNGDAEGALEFFCLMRGAGVEANAVTFVSAVTSCSDLAALA 184

Query: 70  LGKRVH-LHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSG 128
            G+++H L +K    K      S  L+ MY +CG   D+ +V  +    +L   + M+S 
Sbjct: 185 QGQQIHALAIKTGVDKVVPVMTS--LVHMYSRCGCLGDSERVCLEYSGTDLVLCSAMISA 242

Query: 129 YANLGMMKHARNLFDNM----AERDVVSWNTMIIGYAKSGAVEEGLKFYKVL-RRFSISC 183
           Y   G  + A  LF  M    AE + V++ T++   + SG  +EG+  ++++ + + +  
Sbjct: 243 YGFHGHGQKAVGLFKQMMAAGAEPNEVTFLTLLYACSHSGLKDEGMNCFELMTKTYGLQP 302

Query: 184 NEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLF 243
           +   +  I+ +   L       +    +L      + VI  +++ A     +   A R+ 
Sbjct: 303 SVKHYTCIVDL---LGRSGCLNEAEDLILSMPVQPDGVIWKTLLSACKTQKKFDMAERIA 359

Query: 244 D---ETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKN-----PVSWTTL 288
           +   E D  D  ++  + +  A     E  SK+   M E+N      VSW  L
Sbjct: 360 ERVIELDPHDSASYVLLSNIRATSSRWEDVSKVRETMREQNVRKEPGVSWVEL 412


>gi|357440579|ref|XP_003590567.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355479615|gb|AES60818.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1212

 Score =  289 bits (740), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 164/479 (34%), Positives = 265/479 (55%), Gaps = 33/479 (6%)

Query: 118 NLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLR 177
           N+   N+++  Y     +K+  + F+ M E+D++SW T+I GYA++    + L   + ++
Sbjct: 386 NMHIGNSLIDMYGKCCCVKYMGSAFEYMPEKDLISWTTIIAGYAQNECHLDALNLLRKVQ 445

Query: 178 RFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELS 237
              +  +      IL  C  L+  KL +++HG VL  G L++++I ++IV+ Y   GEL+
Sbjct: 446 LEKMDVDPMMIGSILLACSGLKSEKLIKEIHGYVLKGG-LADILIQNAIVNVY---GELA 501

Query: 238 DARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGL 297
               L D                YA+         +F  +  K+ VSWT++I     NGL
Sbjct: 502 ----LVD----------------YAR--------HVFESINSKDIVSWTSMITCCVHNGL 533

Query: 298 GQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSS 357
             +ALELF  ++   I P+  T  S L A A++ SLK GK++HGFLIR  F    ++ +S
Sbjct: 534 AIEALELFNSLIETNIEPDLITLVSVLYAAAALSSLKKGKEIHGFLIRKGFFLEGLIANS 593

Query: 358 LIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKP 417
           L+DMY++CG + + R +F+    ++  +LW +MI+A   HG  + AI LF  M   +V P
Sbjct: 594 LVDMYARCGTMENARNIFNYVKQRD-LILWTSMINANGMHGCGKDAIDLFSKMTDENVLP 652

Query: 418 DKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQ 477
           D IT   +L AC+HSGLV EG  +FE M ++  + P  EH+ACL++LLA++   ++  + 
Sbjct: 653 DHITFLALLYACSHSGLVVEGKQHFEIMKNEYKLEPWPEHYACLVDLLARSNSLEEAYHF 712

Query: 478 LEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKG 537
           +  MP E  + +W AL G CRIH N D+G     +L+  N ++S  + L+S+ ++A G+ 
Sbjct: 713 VRNMPIEPSAEVWCALLGACRIHSNNDLGEVAAKKLLQLNTENSGNYVLVSNTFAADGRW 772

Query: 538 RLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQMGE 596
             VE+VR ++   + KK+   SWIE+ENK+H F   D  HP  + +Y  L Q    + E
Sbjct: 773 NDVEEVRSIMKGNKLKKKPGCSWIEVENKIHTFMARDKSHPQCNNIYLKLAQFTKLLKE 831



 Score =  177 bits (449), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 129/469 (27%), Positives = 212/469 (45%), Gaps = 77/469 (16%)

Query: 59  LQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKN 118
           L+ CA  K+L  G+++H H   TQ    + FL    + MY KCGS  DA KVFDK+  + 
Sbjct: 53  LELCASHKALPQGQQLHAHFLKTQNYLDSVFLDTKFVHMYGKCGSFYDAVKVFDKMSERT 112

Query: 119 LFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRR 178
           +F++                               N MI     +G   E ++ YK +R 
Sbjct: 113 IFTW-------------------------------NAMIGACVSAGRYVEAIELYKEMRV 141

Query: 179 FSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSD 238
             +S + F+F  +L  C   +E +L  ++HG  +  G+   V + ++++  YAKCG+L  
Sbjct: 142 LGVSLDAFTFPCVLKACGAFKERRLGCEIHGVAVKCGYGGFVFVCNALIAMYAKCGDLGG 201

Query: 239 ARRLFDE--TDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNG 296
           AR LFD    +  D ++W +++S  A +G+ ES                           
Sbjct: 202 ARVLFDSGLMEKDDPVSWNSIIS--AHVGEGESL-------------------------- 233

Query: 297 LGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMS 356
              +AL LF RM  + +  N +TF S L AC     +K G+ +H  ++++N  ++  V +
Sbjct: 234 ---EALSLFRRMQEVGVESNTYTFVSALQACEGPTFIKIGRGIHAVILKSNHFTDVYVSN 290

Query: 357 SLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVK 416
           +LI MY+ CG + D  +VF     K+  + WNT++S + Q+     AI  F DM  S  K
Sbjct: 291 ALIAMYANCGQMEDAERVFKSMLFKD-CVSWNTLLSGMVQNDMYSDAINHFQDMQDSGQK 349

Query: 417 PDKITLAVILNACTHSGLVQEGLTYFESMTHDL--GIIPNQEHHACLIELLAQAGCSDQL 474
           PD+++   +LN    SG     L   E   + +  GI  N      LI++  +  C   +
Sbjct: 350 PDQVS---VLNMIAASGRSANLLAGMEVHAYAIKHGIDSNMHIGNSLIDMYGKCCCVKYM 406

Query: 475 MNQLEKMPYEHDSYLWNAL-----HGVCRIHGNIDMGRKVVDQLIDQNP 518
            +  E MP E D   W  +        C +   +++ RKV  + +D +P
Sbjct: 407 GSAFEYMP-EKDLISWTTIIAGYAQNECHLDA-LNLLRKVQLEKMDVDP 453



 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 107/416 (25%), Positives = 177/416 (42%), Gaps = 68/416 (16%)

Query: 26  SLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKT 85
           + +S G+  EAI     +   G+ L A T   +L+ C   K  +LG  +H  + +     
Sbjct: 122 ACVSAGRYVEAIELYKEMRVLGVSLDAFTFPCVLKACGAFKERRLGCEIH-GVAVKCGYG 180

Query: 86  PTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDN- 144
              F+ N LI+MY KCG                       L G         AR LFD+ 
Sbjct: 181 GFVFVCNALIAMYAKCGD----------------------LGG---------ARVLFDSG 209

Query: 145 -MAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKL 203
            M + D VSWN++I  +   G   E L  ++ ++   +  N ++F   L  C     +K+
Sbjct: 210 LMEKDDPVSWNSIISAHVGEGESLEALSLFRRMQEVGVESNTYTFVSALQACEGPTFIKI 269

Query: 204 TRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAK 263
            R +H  +L +   ++V +S++++  YA CG++ DA R+F     +D ++W T++SG  +
Sbjct: 270 GRGIHAVILKSNHFTDVYVSNALIAMYANCGQMEDAERVFKSMLFKDCVSWNTLLSGMVQ 329

Query: 264 LGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSC 323
                 A   F +M +                  GQK              P+Q +  + 
Sbjct: 330 NDMYSDAINHFQDMQDS-----------------GQK--------------PDQVSVLNM 358

Query: 324 LCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKEN 383
           + A     +L  G +VH + I+    SN  + +SLIDMY KC C+      F+    K+ 
Sbjct: 359 IAASGRSANLLAGMEVHAYAIKHGIDSNMHIGNSLIDMYGKCCCVKYMGSAFEYMPEKD- 417

Query: 384 SMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGL 439
            + W T+I+   Q+     A+ L   +    +  D + +  IL AC  SGL  E L
Sbjct: 418 LISWTTIIAGYAQNECHLDALNLLRKVQLEKMDVDPMMIGSILLAC--SGLKSEKL 471



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 73/342 (21%), Positives = 147/342 (42%), Gaps = 67/342 (19%)

Query: 58  ILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVK 117
           IL  C+  KS KL K +H ++   +       + N ++++Y +      AR VF+ I  K
Sbjct: 459 ILLACSGLKSEKLIKEIHGYV--LKGGLADILIQNAIVNVYGELALVDYARHVFESINSK 516

Query: 118 NLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLR 177
           ++ S+ +M++   + G+   A  LF+++ E +                            
Sbjct: 517 DIVSWTSMITCCVHNGLAIEALELFNSLIETN---------------------------- 548

Query: 178 RFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELS 237
              I  +  +   +L     L  LK  +++HG ++  GF    +I++S+VD YA+CG + 
Sbjct: 549 ---IEPDLITLVSVLYAAAALSSLKKGKEIHGFLIRKGFFLEGLIANSLVDMYARCGTME 605

Query: 238 DARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGL 297
           +AR +F+    RD++ WT+M++               N M                 +G 
Sbjct: 606 NARNIFNYVKQRDLILWTSMINA--------------NGM-----------------HGC 634

Query: 298 GQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIV--M 355
           G+ A++LF++M    + P+  TF + L AC+    +  GKQ H  +++  ++        
Sbjct: 635 GKDAIDLFSKMTDENVLPDHITFLALLYACSHSGLVVEGKQ-HFEIMKNEYKLEPWPEHY 693

Query: 356 SSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQH 397
           + L+D+ ++   L +          + ++ +W  ++ A   H
Sbjct: 694 ACLVDLLARSNSLEEAYHFVRNMPIEPSAEVWCALLGACRIH 735



 Score = 68.6 bits (166), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 42/133 (31%), Positives = 60/133 (45%), Gaps = 3/133 (2%)

Query: 299 QKALELFTRMMILRIR-PNQHTFSSCLCACASIVSLKHGKQVHGFLIRT-NFRSNTIVMS 356
           Q     FT  +    R P Q  +S  L  CAS  +L  G+Q+H   ++T N+  +  + +
Sbjct: 27  QSLTHFFTDPLPTTTRFPLQQAYSQALELCASHKALPQGQQLHAHFLKTQNYLDSVFLDT 86

Query: 357 SLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVK 416
             + MY KCG   D  +VFD    +     WN MI A    G   +AI L+ +M    V 
Sbjct: 87  KFVHMYGKCGSFYDAVKVFDKMSER-TIFTWNAMIGACVSAGRYVEAIELYKEMRVLGVS 145

Query: 417 PDKITLAVILNAC 429
            D  T   +L AC
Sbjct: 146 LDAFTFPCVLKAC 158



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 43/165 (26%), Positives = 83/165 (50%), Gaps = 9/165 (5%)

Query: 21  IQSFLSLIS----KGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHL 76
           I S+ S+I+     G   EA+   + L +  I     TL  +L   A   SLK GK +H 
Sbjct: 518 IVSWTSMITCCVHNGLAIEALELFNSLIETNIEPDLITLVSVLYAAAALSSLKKGKEIHG 577

Query: 77  HLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMK 136
            L + +       ++N L+ MY +CG+  +AR +F+ +  ++L  + +M++     G  K
Sbjct: 578 FL-IRKGFFLEGLIANSLVDMYARCGTMENARNIFNYVKQRDLILWTSMINANGMHGCGK 636

Query: 137 HARNLFDNMAERDV----VSWNTMIIGYAKSGAVEEGLKFYKVLR 177
            A +LF  M + +V    +++  ++   + SG V EG + +++++
Sbjct: 637 DAIDLFSKMTDENVLPDHITFLALLYACSHSGLVVEGKQHFEIMK 681


>gi|326528029|dbj|BAJ89066.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 639

 Score =  289 bits (740), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 162/557 (29%), Positives = 294/557 (52%), Gaps = 18/557 (3%)

Query: 43  LAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCG 102
           L + G+ L     + ++   A  + L   +R+       Q    TTFL N L+  Y    
Sbjct: 81  LLKHGLHLDPLAASKLISSYALQRRLPASRRIFASFPNPQ---ATTFLPNTLLRAYALNA 137

Query: 103 SDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAE----RDVVSWNTMII 158
               A  +F  +P ++ F+Y+ ++   ++ G+    R +  ++ +     D    N +I 
Sbjct: 138 LPHAAVSLFSAMPQRDSFTYSFLIKALSSSGLTP-LRAVHSHVVKLGSIEDTYVGNALID 196

Query: 159 GYAKSGAVEEGLK-FYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFL 217
            Y+K+G   +  K F ++ RR ++S N       +   V+  E+   R++  ++      
Sbjct: 197 AYSKNGGFLDASKVFEEMPRRDTVSWNS-----AMAAMVRQGEVASARRMFDEMPD---- 247

Query: 218 SNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEM 277
            + V  ++++D Y K G++ DA  LF     R+V++W+T+VSGY K GD+E A  +F++M
Sbjct: 248 KDTVSWNTVLDGYTKAGKMEDAFELFQCMPERNVVSWSTVVSGYCKKGDIEMARVIFDKM 307

Query: 278 PEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGK 337
           P KN V+WT +++   +NGL ++A  LFT+M    +  +     S L ACA   SL  GK
Sbjct: 308 PTKNLVTWTIMVSACAQNGLVEEAGRLFTQMKEAAVELDVAAVVSILAACAESGSLALGK 367

Query: 338 QVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQH 397
           ++H ++       +T V +++IDM+ KCGC+N    VFD    +++S+ WNT+I     H
Sbjct: 368 RIHRYVRTRQLGRSTHVCNAMIDMFCKCGCVNRADYVFDTEIAEKDSVSWNTIIGGFAMH 427

Query: 398 GYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEH 457
           G+ ++A+  F  M     +PD +T+  +L+ACTH G V+EG  +F +M  D GI+P  EH
Sbjct: 428 GHGDKALDFFAQMKLQGFRPDAVTMINVLSACTHMGFVEEGRQHFSNMERDYGIVPQIEH 487

Query: 458 HACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQN 517
           + C+I+LL + G  ++ +  ++ MP++ +  +W +L   CR+H N++     V++L    
Sbjct: 488 YGCMIDLLGRGGLIEEAVGLIKSMPWDPNEVIWGSLLSACRLHKNVEYAEIAVNELSKLQ 547

Query: 518 PQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLH 577
           P ++  + +LS+IY+  G+   + K R  +     +K    SWIE++   H F+V D  H
Sbjct: 548 PSNAGNYAVLSNIYAEAGQWSDMAKARMQMKGTGSQKSAGSSWIELDEAFHEFTVGDRKH 607

Query: 578 PMRDVLYSVLEQLAGQM 594
              D +  ++++L+  +
Sbjct: 608 SDSDQISEMVDRLSSHV 624



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 103/419 (24%), Positives = 162/419 (38%), Gaps = 87/419 (20%)

Query: 198 LEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARR---------------- 241
           L+ L   +++H Q+L  G   + + +S ++ +YA    L  +RR                
Sbjct: 68  LQHLHHVQELHAQLLKHGLHLDPLAASKLISSYALQRRLPASRRIFASFPNPQATTFLPN 127

Query: 242 -----------------LFDETDARDVLTWTTMV---------------SGYAKLGDME- 268
                            LF     RD  T++ ++               S   KLG +E 
Sbjct: 128 TLLRAYALNALPHAAVSLFSAMPQRDSFTYSFLIKALSSSGLTPLRAVHSHVVKLGSIED 187

Query: 269 ------------------SASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMI 310
                              ASK+F EMP ++ VSW + +A   R G    A  +F  M  
Sbjct: 188 TYVGNALIDAYSKNGGFLDASKVFEEMPRRDTVSWNSAMAAMVRQGEVASARRMFDEM-- 245

Query: 311 LRIRPNQHTFSSCLCACASIVSLKHGKQVHGF-LIRTNFRSNTIVMSSLIDMYSKCGCLN 369
               P++ T S            K GK    F L +     N +  S+++  Y K G + 
Sbjct: 246 ----PDKDTVSWNTVLDGYT---KAGKMEDAFELFQCMPERNVVSWSTVVSGYCKKGDIE 298

Query: 370 DGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNAC 429
             R +FD    K N + W  M+SA  Q+G  E+A RLF  M  ++V+ D   +  IL AC
Sbjct: 299 MARVIFDKMPTK-NLVTWTIMVSACAQNGLVEEAGRLFTQMKEAAVELDVAAVVSILAAC 357

Query: 430 THSGLVQEGLTYFESM-THDLGIIPNQEHHAC--LIELLAQAGCSDQLMNQLEKMPYEHD 486
             SG +  G      + T  LG    +  H C  +I++  + GC ++     +    E D
Sbjct: 358 AESGSLALGKRIHRYVRTRQLG----RSTHVCNAMIDMFCKCGCVNRADYVFDTEIAEKD 413

Query: 487 SYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQ 545
           S  WN + G   +HG+ D       Q+  Q  +  A    + ++ SA      VE+ RQ
Sbjct: 414 SVSWNTIIGGFAMHGHGDKALDFFAQMKLQGFRPDAV--TMINVLSACTHMGFVEEGRQ 470



 Score = 65.9 bits (159), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 47/153 (30%), Positives = 75/153 (49%), Gaps = 6/153 (3%)

Query: 31  GQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFL 90
           G + EA      + +  + L    +  IL  CAES SL LGKR+H +++ T++   +T +
Sbjct: 326 GLVEEAGRLFTQMKEAAVELDVAAVVSILAACAESGSLALGKRIHRYVR-TRQLGRSTHV 384

Query: 91  SNHLISMYFKCGSDVDARKVFD-KIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMA--- 146
            N +I M+ KCG    A  VFD +I  K+  S+N ++ G+A  G    A + F  M    
Sbjct: 385 CNAMIDMFCKCGCVNRADYVFDTEIAEKDSVSWNTIIGGFAMHGHGDKALDFFAQMKLQG 444

Query: 147 -ERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRR 178
              D V+   ++      G VEEG + +  + R
Sbjct: 445 FRPDAVTMINVLSACTHMGFVEEGRQHFSNMER 477


>gi|15233590|ref|NP_193861.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207660|sp|Q9STE1.1|PP333_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g21300
 gi|3402749|emb|CAA20195.1| putative protein [Arabidopsis thaliana]
 gi|7268926|emb|CAB79129.1| putative protein [Arabidopsis thaliana]
 gi|332659037|gb|AEE84437.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 857

 Score =  289 bits (740), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 171/578 (29%), Positives = 294/578 (50%), Gaps = 68/578 (11%)

Query: 18  NCLIQSFLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLH 77
           NC+I  +   +  G + E+++    +   G+   A T + +L   ++ ++L+  K++H +
Sbjct: 309 NCMISGY---VQSGLMEESLTFFYEMISSGVLPDAITFSSLLPSVSKFENLEYCKQIHCY 365

Query: 78  LKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKH 137
           + +    +   FL++ LI  YFKC                                 +  
Sbjct: 366 I-MRHSISLDIFLTSALIDAYFKCRG-------------------------------VSM 393

Query: 138 ARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVK 197
           A+N+F      DVV +  MI GY  +G   + L+ ++ L +  IS NE +   IL +   
Sbjct: 394 AQNIFSQCNSVDVVVFTAMISGYLHNGLYIDSLEMFRWLVKVKISPNEITLVSILPVIGI 453

Query: 198 LEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTM 257
           L  LKL R++HG ++  GF +   I  +++D YAKCG                       
Sbjct: 454 LLALKLGRELHGFIIKKGFDNRCNIGCAVIDMYAKCGR---------------------- 491

Query: 258 VSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQ 317
                    M  A ++F  + +++ VSW ++I    ++     A+++F +M +  I  + 
Sbjct: 492 ---------MNLAYEIFERLSKRDIVSWNSMITRCAQSDNPSAAIDIFRQMGVSGICYDC 542

Query: 318 HTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDL 377
            + S+ L ACA++ S   GK +HGF+I+ +  S+    S+LIDMY+KCG L     VF  
Sbjct: 543 VSISAALSACANLPSESFGKAIHGFMIKHSLASDVYSESTLIDMYAKCGNLKAAMNVFK- 601

Query: 378 TDNKENSMLWNTMISALTQHGYDEQAIRLFHDMV-RSSVKPDKITLAVILNACTHSGLVQ 436
           T  ++N + WN++I+A   HG  + ++ LFH+MV +S ++PD+IT   I+++C H G V 
Sbjct: 602 TMKEKNIVSWNSIIAACGNHGKLKDSLCLFHEMVEKSGIRPDQITFLEIISSCCHVGDVD 661

Query: 437 EGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGV 496
           EG+ +F SMT D GI P QEH+AC+++L  +AG   +    ++ MP+  D+ +W  L G 
Sbjct: 662 EGVRFFRSMTEDYGIQPQQEHYACVVDLFGRAGRLTEAYETVKSMPFPPDAGVWGTLLGA 721

Query: 497 CRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQ 556
           CR+H N+++      +L+D +P +S  + L+S+ ++   +   V KVR L+ ER+ +K  
Sbjct: 722 CRLHKNVELAEVASSKLMDLDPSNSGYYVLISNAHANAREWESVTKVRSLMKEREVQKIP 781

Query: 557 AISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQM 594
             SWIEI  + H F   D  HP    +YS+L  L G++
Sbjct: 782 GYSWIEINKRTHLFVSGDVNHPESSHIYSLLNSLLGEL 819



 Score =  162 bits (409), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 132/545 (24%), Positives = 237/545 (43%), Gaps = 78/545 (14%)

Query: 7   PRGINRKNLPNNCLIQSFL--SLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAE 64
           P  +  + L  +C+I + +       G L   I    ++    I   A T   +L  CA 
Sbjct: 192 PSKLFDRVLQKDCVIWNVMLNGYAKCGALDSVIKGFSVMRMDQISPNAVTFDCVLSVCAS 251

Query: 65  SKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNN 124
              + LG ++H  L +         + N L+SMY KCG   DA K+F  +   +  ++N 
Sbjct: 252 KLLIDLGVQLH-GLVVVSGVDFEGSIKNSLLSMYSKCGRFDDASKLFRMMSRADTVTWNC 310

Query: 125 MLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCN 184
           M+SGY   G+M+ +   F  M                 SG + + + F  +L   S    
Sbjct: 311 MISGYVQSGLMEESLTFFYEMIS---------------SGVLPDAITFSSLLPSVS---- 351

Query: 185 EFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFD 244
                       K E L+  +Q+H  ++      ++ ++S+++DAY KC  +S A+ +F 
Sbjct: 352 ------------KFENLEYCKQIHCYIMRHSISLDIFLTSALIDAYFKCRGVSMAQNIFS 399

Query: 245 ETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALEL 304
           + ++ DV+ +T M+S                               GY  NGL   +LE+
Sbjct: 400 QCNSVDVVVFTAMIS-------------------------------GYLHNGLYIDSLEM 428

Query: 305 FTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSK 364
           F  ++ ++I PN+ T  S L     +++LK G+++HGF+I+  F +   +  ++IDMY+K
Sbjct: 429 FRWLVKVKISPNEITLVSILPVIGILLALKLGRELHGFIIKKGFDNRCNIGCAVIDMYAK 488

Query: 365 CGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAV 424
           CG +N   ++F+   +K + + WN+MI+   Q      AI +F  M  S +  D ++++ 
Sbjct: 489 CGRMNLAYEIFERL-SKRDIVSWNSMITRCAQSDNPSAAIDIFRQMGVSGICYDCVSISA 547

Query: 425 ILNACTH-----SGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLE 479
            L+AC +      G    G     S+  D+         + LI++ A+ G     MN  +
Sbjct: 548 ALSACANLPSESFGKAIHGFMIKHSLASDV------YSESTLIDMYAKCGNLKAAMNVFK 601

Query: 480 KMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRL 539
            M  E +   WN++   C  HG +     +  ++++++         L  I S    G +
Sbjct: 602 TMK-EKNIVSWNSIIAACGNHGKLKDSLCLFHEMVEKSGIRPDQITFLEIISSCCHVGDV 660

Query: 540 VEKVR 544
            E VR
Sbjct: 661 DEGVR 665



 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 107/411 (26%), Positives = 185/411 (45%), Gaps = 67/411 (16%)

Query: 16  PNNCLIQSFLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVH 75
           P N +I SF   +  G L++A++    +   G+     T   +++ C   K+ K      
Sbjct: 105 PWNSIISSF---VRNGLLNQALAFYFKMLCFGVSPDVSTFPCLVKACVALKNFK------ 155

Query: 76  LHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMM 135
                        FLS+ + S+   C                N F  ++++  Y   G +
Sbjct: 156 ----------GIDFLSDTVSSLGMDC----------------NEFVASSLIKAYLEYGKI 189

Query: 136 KHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTIC 195
                LFD + ++D V WN M+ GYAK GA++  +K + V+R   IS N  +F  +L++C
Sbjct: 190 DVPSKLFDRVLQKDCVIWNVMLNGYAKCGALDSVIKGFSVMRMDQISPNAVTFDCVLSVC 249

Query: 196 VKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWT 255
                + L  Q+HG V+V+G      I +S++  Y+KCG   DA +LF      D +TW 
Sbjct: 250 ASKLLIDLGVQLHGLVVVSGVDFEGSIKNSLLSMYSKCGRFDDASKLFRMMSRADTVTWN 309

Query: 256 TMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRP 315
            M+SGY + G ME +   F EM                                   + P
Sbjct: 310 CMISGYVQSGLMEESLTFFYEMISSG-------------------------------VLP 338

Query: 316 NQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVF 375
           +  TFSS L + +   +L++ KQ+H +++R +   +  + S+LID Y KC  ++  + +F
Sbjct: 339 DAITFSSLLPSVSKFENLEYCKQIHCYIMRHSISLDIFLTSALIDAYFKCRGVSMAQNIF 398

Query: 376 DLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVIL 426
               N  + +++  MIS    +G    ++ +F  +V+  + P++ITL  IL
Sbjct: 399 SQC-NSVDVVVFTAMISGYLHNGLYIDSLEMFRWLVKVKISPNEITLVSIL 448



 Score =  149 bits (375), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 96/372 (25%), Positives = 172/372 (46%), Gaps = 62/372 (16%)

Query: 55  LAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKI 114
           L+ +LQ C+    L+ GK+VH  L +    +  ++    ++ MY  CGS  D  K+F ++
Sbjct: 38  LSLLLQACSNPNLLRQGKQVHAFL-IVNSISGDSYTDERILGMYAMCGSFSDCGKMFYRL 96

Query: 115 PVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYK 174
                                        ++    +  WN++I  + ++G + + L FY 
Sbjct: 97  -----------------------------DLRRSSIRPWNSIISSFVRNGLLNQALAFYF 127

Query: 175 VLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCG 234
            +  F +S +  +F  ++  CV L+  K    +   V   G   N  ++SS++ AY + G
Sbjct: 128 KMLCFGVSPDVSTFPCLVKACVALKNFKGIDFLSDTVSSLGMDCNEFVASSLIKAYLEYG 187

Query: 235 ELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTR 294
           ++    +LFD    +D + W  M++GYAK G ++S                  +I G   
Sbjct: 188 KIDVPSKLFDRVLQKDCVIWNVMLNGYAKCGALDS------------------VIKG--- 226

Query: 295 NGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIV 354
                     F+ M + +I PN  TF   L  CAS + +  G Q+HG ++ +       +
Sbjct: 227 ----------FSVMRMDQISPNAVTFDCVLSVCASKLLIDLGVQLHGLVVVSGVDFEGSI 276

Query: 355 MSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSS 414
            +SL+ MYSKCG  +D  ++F +  ++ +++ WN MIS   Q G  E+++  F++M+ S 
Sbjct: 277 KNSLLSMYSKCGRFDDASKLFRMM-SRADTVTWNCMISGYVQSGLMEESLTFFYEMISSG 335

Query: 415 VKPDKITLAVIL 426
           V PD IT + +L
Sbjct: 336 VLPDAITFSSLL 347



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 78/356 (21%), Positives = 141/356 (39%), Gaps = 56/356 (15%)

Query: 157 IIGYAKSGAVEEGLKFYK--VLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVT 214
           I  Y KS  +    +F +  + RR S+         +L  C     L+  +QVH  ++V 
Sbjct: 14  IAPYKKSLPLRNSSRFLEETIPRRLSL---------LLQACSNPNLLRQGKQVHAFLIVN 64

Query: 215 GFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLF 274
               +      I+  YA CG  SD  ++F   D R                         
Sbjct: 65  SISGDSYTDERILGMYAMCGSFSDCGKMFYRLDLR------------------------- 99

Query: 275 NEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLK 334
                 +   W ++I+ + RNGL  +AL  + +M+   + P+  TF   + AC ++ + K
Sbjct: 100 ----RSSIRPWNSIISSFVRNGLLNQALAFYFKMLCFGVSPDVSTFPCLVKACVALKNFK 155

Query: 335 HGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISAL 394
               +   +       N  V SSLI  Y + G ++   ++FD    K+  ++WN M++  
Sbjct: 156 GIDFLSDTVSSLGMDCNEFVASSLIKAYLEYGKIDVPSKLFDRVLQKD-CVIWNVMLNGY 214

Query: 395 TQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPN 454
            + G  +  I+ F  M    + P+ +T   +L+ C    L+  G+       H L ++  
Sbjct: 215 AKCGALDSVIKGFSVMRMDQISPNAVTFDCVLSVCASKLLIDLGVQ-----LHGLVVVSG 269

Query: 455 QEHHA----CLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMG 506
            +        L+ + ++ G  D   ++L +M    D+  WN     C I G +  G
Sbjct: 270 VDFEGSIKNSLLSMYSKCGRFDD-ASKLFRMMSRADTVTWN-----CMISGYVQSG 319


>gi|326488203|dbj|BAJ89940.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 637

 Score =  289 bits (740), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 172/540 (31%), Positives = 265/540 (49%), Gaps = 65/540 (12%)

Query: 58  ILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVK 117
           ILQ C  S SL+ G+++H  L L     P T LS  L+ +Y  CG               
Sbjct: 68  ILQSCVASGSLRAGRQLHGRL-LVSGLGPDTVLSTKLVDLYAACGQ-------------- 112

Query: 118 NLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLR 177
                            + HAR LFD M +R+V  WN +I  YA+ G  E  ++ Y+ + 
Sbjct: 113 -----------------VGHARRLFDGMPKRNVFLWNVLIRAYAREGPREAAVRLYRGMV 155

Query: 178 RFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELS 237
              +  + F++  +L  C  L +L+  R+VH +V  T +  +V + + +VD YAKCG + 
Sbjct: 156 EHGVEPDNFTYPLVLKACAALLDLETGREVHQRVSGTRWGQDVFVCAGVVDMYAKCGCVD 215

Query: 238 DARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGL 297
           DAR +FD    RD + W +M                               IA Y +NG 
Sbjct: 216 DARAVFDGIAVRDAVVWNSM-------------------------------IAAYGQNGR 244

Query: 298 GQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSS 357
             +AL L   M    I P   T  S + A A   +L  G+++HGF  R  F     + +S
Sbjct: 245 PMEALALCRDMAANGIGPTIATLVSAVSAAADAAALPRGRELHGFGWRRGFGLQDKLKTS 304

Query: 358 LIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMV-RSSVK 416
           L+DMY+K G +   R +F+    +E  + WN MI     HG+ ++A+ LF+ M   + V 
Sbjct: 305 LVDMYAKSGWVQVARVLFEQLMKRE-LVSWNAMICGYGMHGHADEALALFNKMKGDAQVT 363

Query: 417 PDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMN 476
           PD IT   +L+AC H G+V+E   +F  M +   I P  +H+ C+I++L   G  ++  +
Sbjct: 364 PDNITFVGVLSACNHGGMVEEAKEFFYLMVNAYSIKPTVQHYTCVIDVLGHTGRFEEAYD 423

Query: 477 QLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGK 536
            ++ M  E DS +W AL   C+IH N+++G   + +LI+  P+ +  +  LS+IY+  GK
Sbjct: 424 LIKGMSIEPDSGIWGALLNGCKIHKNVELGELALQKLIELEPEDAGNYVHLSNIYAQSGK 483

Query: 537 GRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQMGE 596
                +VR+L+  R  KK  A SWIE++ K H F V D+ HP  D +Y  LE+L G M +
Sbjct: 484 WEKAARVRKLMTNRGLKKILACSWIELKGKTHGFLVGDASHPRSDEIYGELERLEGLMSD 543



 Score = 95.1 bits (235), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 52/178 (29%), Positives = 94/178 (52%), Gaps = 7/178 (3%)

Query: 318 HTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDL 377
           H  +S L +C +  SL+ G+Q+HG L+ +    +T++ + L+D+Y+ CG +   R++FD 
Sbjct: 63  HHHTSILQSCVASGSLRAGRQLHGRLLVSGLGPDTVLSTKLVDLYAACGQVGHARRLFDG 122

Query: 378 TDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQE 437
              K N  LWN +I A  + G  E A+RL+  MV   V+PD  T  ++L AC     ++ 
Sbjct: 123 MP-KRNVFLWNVLIRAYAREGPREAAVRLYRGMVEHGVEPDNFTYPLVLKACAALLDLET 181

Query: 438 GLTYFESMTHDLGIIPNQEHHAC--LIELLAQAGCSDQLMNQLEKMPYEHDSYLWNAL 493
           G    + ++   G    Q+   C  ++++ A+ GC D      + +    D+ +WN++
Sbjct: 182 GREVHQRVS---GTRWGQDVFVCAGVVDMYAKCGCVDDARAVFDGIAVR-DAVVWNSM 235



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 74/313 (23%), Positives = 130/313 (41%), Gaps = 41/313 (13%)

Query: 18  NCLIQSFLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLH 77
           N LI+++     +G    A+     + + G+     T   +L+ CA    L+ G+ VH  
Sbjct: 132 NVLIRAY---AREGPREAAVRLYRGMVEHGVEPDNFTYPLVLKACAALLDLETGREVHQR 188

Query: 78  LKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKH 137
           +  T R     F+   ++ MY KCG   DAR VFD I V++   +N+M++ Y   G    
Sbjct: 189 VSGT-RWGQDVFVCAGVVDMYAKCGCVDDARAVFDGIAVRDAVVWNSMIAAYGQNGRPME 247

Query: 138 ARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVK 197
           A  L  +MA                                  I     +    ++    
Sbjct: 248 ALALCRDMAAN-------------------------------GIGPTIATLVSAVSAAAD 276

Query: 198 LEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTM 257
              L   R++HG     GF     + +S+VD YAK G +  AR LF++   R++++W  M
Sbjct: 277 AAALPRGRELHGFGWRRGFGLQDKLKTSLVDMYAKSGWVQVARVLFEQLMKRELVSWNAM 336

Query: 258 VSGYAKLGDMESASKLFNEMP-----EKNPVSWTTLIAGYTRNGLGQKALELFTRMM-IL 311
           + GY   G  + A  LFN+M        + +++  +++     G+ ++A E F  M+   
Sbjct: 337 ICGYGMHGHADEALALFNKMKGDAQVTPDNITFVGVLSACNHGGMVEEAKEFFYLMVNAY 396

Query: 312 RIRPNQHTFSSCL 324
            I+P    ++  +
Sbjct: 397 SIKPTVQHYTCVI 409


>gi|356536685|ref|XP_003536866.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g71490-like [Glycine max]
          Length = 723

 Score =  289 bits (740), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 168/578 (29%), Positives = 293/578 (50%), Gaps = 42/578 (7%)

Query: 18  NCLIQSFLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLH 77
           N LI ++   +  G   EA+     +  + I     T   +L+ C ES     G  VH  
Sbjct: 151 NLLISAY---VRNGFFVEALCVYKNMLNKKIEPDEYTYPSVLKACGESLDFNSGLEVHRS 207

Query: 78  LKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKH 137
           ++ +  +  + F+ N L+SMY + G    AR +FD +P ++  S+N ++S YA+ G+ K 
Sbjct: 208 IEASSMEW-SLFVHNALVSMYGRFGKLEIARHLFDNMPRRDSVSWNTIISCYASRGIWKE 266

Query: 138 ARNLFDNMAER----DVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILT 193
           A  LF +M E     +V+ WNT+  G   SG     L+    +R  SI  +  +    L 
Sbjct: 267 AFQLFGSMQEEGVEMNVIIWNTIAGGCLHSGNFRGALQLISQMRT-SIHLDAIAMVVGLN 325

Query: 194 ICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLT 253
            C  +  +KL +++HG  + T F     + ++++  Y++C +L  A  LF  T+ + ++T
Sbjct: 326 ACSHIGAIKLGKEIHGHAVRTCFDVFDNVKNALITMYSRCRDLGHAFILFHRTEEKGLIT 385

Query: 254 WTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRI 313
           W  M+SGYA +   E  + LF EM ++                                +
Sbjct: 386 WNAMLSGYAHMDRYEEVTFLFREMLQEG-------------------------------M 414

Query: 314 RPNQHTFSSCLCACASIVSLKHGKQVHGFLIR-TNFRSNTIVMSSLIDMYSKCGCLNDGR 372
            PN  T +S L  CA I +L+HGK+ H ++++   F    ++ ++L+DMYS+ G + + R
Sbjct: 415 EPNYVTIASVLPLCARIANLQHGKEFHCYIMKHKQFEEYLLLWNALVDMYSRSGRVLEAR 474

Query: 373 QVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHS 432
           +VFD +  K + + + +MI      G  E  ++LF +M +  +KPD +T+  +L AC+HS
Sbjct: 475 KVFD-SLTKRDEVTYTSMILGYGMKGEGETTLKLFEEMCKLEIKPDHVTMVAVLTACSHS 533

Query: 433 GLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNA 492
           GLV +G   F+ M    GI+P  EH+AC+ +L  +AG  ++    +  MPY+  S +W  
Sbjct: 534 GLVAQGQVLFKRMIDVHGIVPRLEHYACMADLFGRAGLLNKAKEFITGMPYKPTSAMWAT 593

Query: 493 LHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQF 552
           L G CRIHGN +MG     +L++  P  S  + L++++Y+A G  R + +VR  +     
Sbjct: 594 LLGACRIHGNTEMGEWAAGKLLEMKPDHSGYYVLIANMYAAAGSWRKLAEVRTYMRNLGV 653

Query: 553 KKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQL 590
           +K    +W+++ ++   F V DS +P    +Y +++ L
Sbjct: 654 RKAPGCAWVDVGSEFSPFLVGDSSNPHASEIYPLMDGL 691



 Score =  148 bits (373), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 125/504 (24%), Positives = 218/504 (43%), Gaps = 72/504 (14%)

Query: 20  LIQSFLSLISKGQLSEAISSLDLLAQRGI--RLPAETLAFILQQCAESKSLKLGKRVHLH 77
           LI S    ++ G L+ A  +   +        L    +  +L  C   KSL  GK++H  
Sbjct: 47  LIASLKDFVTHGHLTNAFKTFFQIQHHAASSHLLLHPIGSLLLACTHFKSLSQGKQLH-- 104

Query: 78  LKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKH 137
                           +IS+    G D            +N    + +++ Y N+ ++  
Sbjct: 105 --------------AQVISL----GLD------------QNPILVSRLVNFYTNVNLLVD 134

Query: 138 ARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVK 197
           A+ + ++    D + WN +I  Y ++G   E L  YK +    I  +E+++  +L  C +
Sbjct: 135 AQFVTESSNTLDPLHWNLLISAYVRNGFFVEALCVYKNMLNKKIEPDEYTYPSVLKACGE 194

Query: 198 LEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTM 257
             +     +VH  +  +    ++ + +++V  Y + G+L  AR LFD    RD ++W T+
Sbjct: 195 SLDFNSGLEVHRSIEASSMEWSLFVHNALVSMYGRFGKLEIARHLFDNMPRRDSVSWNTI 254

Query: 258 VSGYAKLGDMESASKLFNEMPEK----NPVSWTTLIAGYTRNGLGQKALELFTRMMILRI 313
           +S YA  G  + A +LF  M E+    N + W T+  G   +G  + AL+L ++M    I
Sbjct: 255 ISCYASRGIWKEAFQLFGSMQEEGVEMNVIIWNTIAGGCLHSGNFRGALQLISQMRT-SI 313

Query: 314 RPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQ 373
             +       L AC+ I ++K GK++HG  +RT F     V ++LI MYS+C  L     
Sbjct: 314 HLDAIAMVVGLNACSHIGAIKLGKEIHGHAVRTCFDVFDNVKNALITMYSRCRDLGHAFI 373

Query: 374 VFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSG 433
           +F  T+ K   + WN M+S        E+   LF +M++  ++P+ +T+A +L  C    
Sbjct: 374 LFHRTEEK-GLITWNAMLSGYAHMDRYEEVTFLFREMLQEGMEPNYVTIASVLPLCARIA 432

Query: 434 LVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNAL 493
            +Q G                +E H C I               ++   +E    LWNAL
Sbjct: 433 NLQHG----------------KEFH-CYI---------------MKHKQFEEYLLLWNAL 460

Query: 494 HGVCRIHGNIDMGRKVVDQLIDQN 517
             +    G +   RKV D L  ++
Sbjct: 461 VDMYSRSGRVLEARKVFDSLTKRD 484


>gi|242083462|ref|XP_002442156.1| hypothetical protein SORBIDRAFT_08g015260 [Sorghum bicolor]
 gi|241942849|gb|EES15994.1| hypothetical protein SORBIDRAFT_08g015260 [Sorghum bicolor]
          Length = 557

 Score =  289 bits (740), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 160/499 (32%), Positives = 261/499 (52%), Gaps = 41/499 (8%)

Query: 136 KHARNLFDNM---AERDVVSWNTMIIGYAKSG-----AVEEGLKFYKV-LRRFSISCNEF 186
           +HAR +FD+    A  +V  W   I  YA+       A E  L  +++ LRR     N F
Sbjct: 59  RHARAVFDSAVPAASENVYLWTATIAAYARHASSSLSAAEGALALFRLMLRRGVPRPNAF 118

Query: 187 SFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDET 246
           + + ++  C  L  ++   QVHG +   G      + +++VD Y   G ++DARR+FDE 
Sbjct: 119 TASSVVRCCSALRAVREGIQVHGFLFSAGLGRASHVGAALVDMYGSLGRVADARRVFDEM 178

Query: 247 DARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNG---------- 296
            + +V+   TMV+ Y + GD+E+   +F+ M E++P+SW TL+ GY R G          
Sbjct: 179 PSTNVVLGNTMVACYVRAGDVEAGRDVFDRMAERDPISWNTLMMGYLRQGEAGVARDLFE 238

Query: 297 ---------------------LGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKH 335
                                L   A+E+F RM + R +P+  T +  + ACA + SL  
Sbjct: 239 EMPDRNVNSWNMVIAACSQEGLWADAVEVFNRMRLARFQPDPATMAVLMSACAQLGSLSI 298

Query: 336 GKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALT 395
             QVHG L +     N  V++SLIDMY+KCG ++    +F  T  K +++ +N MI AL 
Sbjct: 299 ASQVHGILRKGCVEMNFHVLNSLIDMYAKCGSVSQAHLLFVETRLK-DTVSYNVMICALA 357

Query: 396 QHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQ 455
           QHG+   A+++F +M    ++PD +T   +L+AC H+GLV +G  YFESM  +  I  + 
Sbjct: 358 QHGHGRDALQIFDEMSEEGLQPDAVTFLGVLSACAHAGLVHDGKFYFESMRTNYAIEQSP 417

Query: 456 EHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLID 515
           +H+AC+++L  +AG  ++       MP +  + +W AL   CR H N+++G+    +LI 
Sbjct: 418 DHYACMVDLYGRAGLIEEAYQLARAMPVKPHAGVWGALINACRKHCNVEVGKVAARELIA 477

Query: 516 QNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDS 575
             P +  T+ LL++  +   +   VE V Q +  +  +K    SW+E++  VH F + +S
Sbjct: 478 IEPGNPGTYVLLANTLARGQQWDFVETVWQSMRGKGIEKTAGCSWLEVDRVVHEFLMGES 537

Query: 576 LHPMRDVLYSVLEQLAGQM 594
            HP  D +Y +LE L  Q+
Sbjct: 538 SHPNSDEIYCILEHLYLQL 556



 Score =  142 bits (358), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 101/397 (25%), Positives = 185/397 (46%), Gaps = 69/397 (17%)

Query: 36  AISSLDLLAQRGIRLP-AETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHL 94
           A++   L+ +RG+  P A T + +++ C+  ++++ G +VH  L  +      + +   L
Sbjct: 100 ALALFRLMLRRGVPRPNAFTASSVVRCCSALRAVREGIQVHGFL-FSAGLGRASHVGAAL 158

Query: 95  ISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWN 154
           + MY   G   DAR+VFD++P  N+   N M++ Y   G ++  R++FD MAERD +SWN
Sbjct: 159 VDMYGSLGRVADARRVFDEMPSTNVVLGNTMVACYVRAGDVEAGRDVFDRMAERDPISWN 218

Query: 155 TMIIGYAKSGAV--------------------------EEGL-----KFYKVLRRFSISC 183
           T+++GY + G                            +EGL     + +  +R      
Sbjct: 219 TLMMGYLRQGEAGVARDLFEEMPDRNVNSWNMVIAACSQEGLWADAVEVFNRMRLARFQP 278

Query: 184 NEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLS-NVVISSSIVDAYAKCGELSDARRL 242
           +  + A +++ C +L  L +  QVHG +L  G +  N  + +S++D YAKCG +S A  L
Sbjct: 279 DPATMAVLMSACAQLGSLSIASQVHG-ILRKGCVEMNFHVLNSLIDMYAKCGSVSQAHLL 337

Query: 243 FDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKAL 302
           F ET  +D +++  M+   A+ G    A ++F+EM E+                      
Sbjct: 338 FVETRLKDTVSYNVMICALAQHGHGRDALQIFDEMSEEG--------------------- 376

Query: 303 ELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNF--RSNTIVMSSLID 360
                     ++P+  TF   L ACA    L H  + +   +RTN+    +    + ++D
Sbjct: 377 ----------LQPDAVTFLGVLSACAH-AGLVHDGKFYFESMRTNYAIEQSPDHYACMVD 425

Query: 361 MYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQH 397
           +Y + G + +  Q+      K ++ +W  +I+A  +H
Sbjct: 426 LYGRAGLIEEAYQLARAMPVKPHAGVWGALINACRKH 462


>gi|110289149|gb|ABB47711.2| pentatricopeptide, putative [Oryza sativa Japonica Group]
          Length = 697

 Score =  289 bits (740), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 166/556 (29%), Positives = 273/556 (49%), Gaps = 65/556 (11%)

Query: 39  SLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMY 98
           +LD +  R +         ++  CA  +SL   + +H HL  +Q    + FL N LI +Y
Sbjct: 51  TLDSVDARELAATPRLYHSLITACARYRSLDDARAIHAHLAGSQFAG-SVFLDNSLIHLY 109

Query: 99  FKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMII 158
            KCG+  DA                               R +FD M  RD+ SW ++I 
Sbjct: 110 CKCGAVADA-------------------------------RRVFDGMPARDMCSWTSLIA 138

Query: 159 GYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLS 218
           GYA++   +E L     + R     N F+FA +L          +  Q+H   +   +  
Sbjct: 139 GYAQNDMPDEALGLLPGMLRGRFKPNGFTFASLLKAAGASASSGIGEQIHALTVKYDWHD 198

Query: 219 NVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMP 278
           +V + S+++D YA+C                               G M+ A  +F+++ 
Sbjct: 199 DVYVGSALLDMYARC-------------------------------GRMDMAIAVFDQLE 227

Query: 279 EKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQ 338
            KN VSW  LIAG+ R G G+  L +F  M          T+SS   A A I +L+ GK 
Sbjct: 228 SKNGVSWNALIAGFARKGDGETTLLMFAEMQRNGFEATHFTYSSVFSAIAGIGALEQGKW 287

Query: 339 VHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHG 398
           VH  +I++  R +  V ++++DMY+K G + D R+VFD  D K++ + WN+M++A  Q+G
Sbjct: 288 VHAHMIKSGERLSAFVGNTILDMYAKSGSMIDARKVFDRVD-KKDVVTWNSMLTAFAQYG 346

Query: 399 YDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHH 458
              +A+  F +M +  V  ++IT   IL AC+H GLV+EG  YF+ M  +  + P  +H+
Sbjct: 347 LGREAVTHFEEMRKCGVHLNQITFLSILTACSHGGLVKEGKQYFD-MMKEYNLEPEIDHY 405

Query: 459 ACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNP 518
             +++LL +AG  +  +  + KMP +  + +W AL G CR+H N  +G+   D + + +P
Sbjct: 406 VTVVDLLGRAGLLNDALVFIFKMPMKPTAAVWGALLGSCRMHKNAKIGQFAADHVFELDP 465

Query: 519 QSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHP 578
             +    LL +IY++ G+     +VR+++     KKE A SW+EIEN VH F  +D  HP
Sbjct: 466 DDTGPPVLLYNIYASTGQWDAAARVRKMMKATGVKKEPACSWVEIENSVHMFVANDDTHP 525

Query: 579 MRDVLYSVLEQLAGQM 594
             + +Y   E+++ Q+
Sbjct: 526 RSEEIYKKWEEISIQI 541



 Score = 72.0 bits (175), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 43/168 (25%), Positives = 88/168 (52%), Gaps = 8/168 (4%)

Query: 18  NCLIQSFLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLH 77
           N LI  F     KG     +     + + G      T + +    A   +L+ GK VH H
Sbjct: 235 NALIAGF---ARKGDGETTLLMFAEMQRNGFEATHFTYSSVFSAIAGIGALEQGKWVHAH 291

Query: 78  LKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKH 137
           +  +  +  + F+ N ++ MY K GS +DARKVFD++  K++ ++N+ML+ +A  G+ + 
Sbjct: 292 MIKSGERL-SAFVGNTILDMYAKSGSMIDARKVFDRVDKKDVVTWNSMLTAFAQYGLGRE 350

Query: 138 ARNLFDNMAERDV----VSWNTMIIGYAKSGAVEEGLKFYKVLRRFSI 181
           A   F+ M +  V    +++ +++   +  G V+EG +++ +++ +++
Sbjct: 351 AVTHFEEMRKCGVHLNQITFLSILTACSHGGLVKEGKQYFDMMKEYNL 398


>gi|359488035|ref|XP_003633690.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g14820-like [Vitis vinifera]
          Length = 731

 Score =  289 bits (740), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 146/482 (30%), Positives = 264/482 (54%), Gaps = 3/482 (0%)

Query: 117 KNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVL 176
           +++F  N ++  Y     +++AR +FD M ERDVVSW+TMI   +++   +  L+  + +
Sbjct: 157 RDVFVGNALMLMYGECACVEYARLVFDKMMERDVVSWSTMIRSLSRNKEFDMALELIREM 216

Query: 177 RRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSN--VVISSSIVDAYAKCG 234
               +  +E +   ++ +      +++ + +H  V+      +  V  +++++D YAKCG
Sbjct: 217 NFMQVRPSEVAMVSMVNLFADTANMRMGKAMHAYVIRNSNNEHMGVPTTTALLDMYAKCG 276

Query: 235 ELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTR 294
            L  AR+LF+    + V++WT M++G  +   +E A  LF+    ++ + WT +++ Y +
Sbjct: 277 HLGLARQLFNGLTQKTVVSWTAMIAGCIRSNRLEEARALFDSTQNRDVMIWTAMLSAYAQ 336

Query: 295 NGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIV 354
                +A  LF +M    +RP + T  S L  CA   +L  GK VH ++ +     + I+
Sbjct: 337 ANCIDQAFNLFDQMRTSGVRPTKVTIVSLLSLCAVAGALDLGKWVHSYIDKERVEVDCIL 396

Query: 355 MSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSS 414
            ++L+DMY+KCG +N   ++F    +++  M WN +I+    HGY E+A+ +F +M R  
Sbjct: 397 NTALVDMYAKCGDINAAGRLFIEAISRDICM-WNAIITGFAMHGYGEEALDIFAEMERQG 455

Query: 415 VKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQL 474
           VKP+ IT   +L+AC+H+GLV EG   FE M H  G++P  EH+ C+++LL +AG  D+ 
Sbjct: 456 VKPNDITFIGLLHACSHAGLVTEGKKLFEKMVHTFGLVPQIEHYGCMVDLLGRAGLLDEA 515

Query: 475 MNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSAL 534
              ++ MP + ++ +W AL   CR+H N  +G     QL++  P++   + L+S+IY+A 
Sbjct: 516 HEMIKSMPIKPNTIVWGALVAACRLHKNPQLGELAATQLLEIEPENCGYNVLMSNIYAAA 575

Query: 535 GKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQM 594
            +      VR+ +     KKE   S IE+   VH F + D  HP    +  +L ++  ++
Sbjct: 576 NRWSDAAGVRKTMKTVGMKKEPGHSVIEVNGTVHEFLMGDQSHPQIRRINEMLAEMRRKL 635

Query: 595 GE 596
            E
Sbjct: 636 NE 637



 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 80/340 (23%), Positives = 161/340 (47%), Gaps = 39/340 (11%)

Query: 63  AESKSLKLGKRVHLHLKLTQRK----TPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKN 118
           A++ ++++GK +H ++           PTT     L+ MY KCG    AR++F+ +  K 
Sbjct: 236 ADTANMRMGKAMHAYVIRNSNNEHMGVPTT---TALLDMYAKCGHLGLARQLFNGLTQKT 292

Query: 119 LFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRR 178
           + S+  M++G      ++ AR LFD+   RDV+ W  M+  YA++  +++    +  +R 
Sbjct: 293 VVSWTAMIAGCIRSNRLEEARALFDSTQNRDVMIWTAMLSAYAQANCIDQAFNLFDQMRT 352

Query: 179 FSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSD 238
             +   + +   +L++C     L L + VH  +       + ++++++VD YAKCG+++ 
Sbjct: 353 SGVRPTKVTIVSLLSLCAVAGALDLGKWVHSYIDKERVEVDCILNTALVDMYAKCGDINA 412

Query: 239 ARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLG 298
           A RLF E  +RD+  W  +++G+A                                +G G
Sbjct: 413 AGRLFIEAISRDICMWNAIITGFAM-------------------------------HGYG 441

Query: 299 QKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRT-NFRSNTIVMSS 357
           ++AL++F  M    ++PN  TF   L AC+    +  GK++   ++ T            
Sbjct: 442 EEALDIFAEMERQGVKPNDITFIGLLHACSHAGLVTEGKKLFEKMVHTFGLVPQIEHYGC 501

Query: 358 LIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQH 397
           ++D+  + G L++  ++      K N+++W  +++A   H
Sbjct: 502 MVDLLGRAGLLDEAHEMIKSMPIKPNTIVWGALVAACRLH 541



 Score =  125 bits (314), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 98/387 (25%), Positives = 166/387 (42%), Gaps = 77/387 (19%)

Query: 153 WNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVL 212
           WN +I  Y K       L  Y  LR+     + F    +L  C ++   +L +++HG VL
Sbjct: 92  WNFVITSYTKRNQPRNALNVYAQLRKMDFEVDNFMAPSVLKACGQVSWTQLGKEIHGFVL 151

Query: 213 VTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASK 272
             G   +V + ++++  Y +C  +  AR +FD+   RDV++W+TM               
Sbjct: 152 KKGLDRDVFVGNALMLMYGECACVEYARLVFDKMMERDVVSWSTM--------------- 196

Query: 273 LFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVS 332
                           I   +RN     ALEL   M  +++RP++    S +   A   +
Sbjct: 197 ----------------IRSLSRNKEFDMALELIREMNFMQVRPSEVAMVSMVNLFADTAN 240

Query: 333 LKHGKQVHGFLIR--TNFRSNTIVMSSLIDMYSKCGCLNDGRQVFD-------------- 376
           ++ GK +H ++IR   N        ++L+DMY+KCG L   RQ+F+              
Sbjct: 241 MRMGKAMHAYVIRNSNNEHMGVPTTTALLDMYAKCGHLGLARQLFNGLTQKTVVSWTAMI 300

Query: 377 --------------LTDNKENS--MLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKI 420
                         L D+ +N   M+W  M+SA  Q    +QA  LF  M  S V+P K+
Sbjct: 301 AGCIRSNRLEEARALFDSTQNRDVMIWTAMLSAYAQANCIDQAFNLFDQMRTSGVRPTKV 360

Query: 421 TLAVILNACTHSGLVQEGL---TYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQ 477
           T+  +L+ C  +G +  G    +Y +    ++  I N      L+++ A+  C D  +N 
Sbjct: 361 TIVSLLSLCAVAGALDLGKWVHSYIDKERVEVDCILN----TALVDMYAK--CGD--INA 412

Query: 478 LEKMPYE---HDSYLWNALHGVCRIHG 501
             ++  E    D  +WNA+     +HG
Sbjct: 413 AGRLFIEAISRDICMWNAIITGFAMHG 439



 Score = 59.7 bits (143), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 42/154 (27%), Positives = 77/154 (50%), Gaps = 6/154 (3%)

Query: 33  LSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSN 92
           + +A +  D +   G+R    T+  +L  CA + +L LGK VH ++   +R      L+ 
Sbjct: 340 IDQAFNLFDQMRTSGVRPTKVTIVSLLSLCAVAGALDLGKWVHSYID-KERVEVDCILNT 398

Query: 93  HLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVS 152
            L+ MY KCG    A ++F +   +++  +N +++G+A  G  + A ++F  M  + V  
Sbjct: 399 ALVDMYAKCGDINAAGRLFIEAISRDICMWNAIITGFAMHGYGEEALDIFAEMERQGVKP 458

Query: 153 WNTMIIGY----AKSGAVEEGLK-FYKVLRRFSI 181
            +   IG     + +G V EG K F K++  F +
Sbjct: 459 NDITFIGLLHACSHAGLVTEGKKLFEKMVHTFGL 492


>gi|345505226|gb|AEN99837.1| chlororespiratory reduction 4, partial [Lobularia maritima]
          Length = 570

 Score =  289 bits (740), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 171/521 (32%), Positives = 274/521 (52%), Gaps = 44/521 (8%)

Query: 54  TLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDK 113
           +L+ + + C+     K G ++H  L  T       FL N LI +Y KC     AR+VFD+
Sbjct: 87  SLSLVTKACSRLGFAKEGMQIHGFLTKTV-ICSDLFLQNCLIGLYIKCSCLGYARQVFDR 145

Query: 114 IPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAE--RDVVSWNTMIIGYAKSGAVEEGLK 171
           +P ++  SYN+M+ GY   G+++ AR LFD M +  ++++SWN+MI GYA+    E+G+ 
Sbjct: 146 MPQRDSVSYNSMIDGYVKCGLIESARELFDLMPKEKKNLISWNSMIGGYAQR---EDGVD 202

Query: 172 FYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYA 231
                                         KL  ++  + L++         +S++D Y 
Sbjct: 203 IAS---------------------------KLFAEMPEKDLISW--------NSLIDGYV 227

Query: 232 KCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAG 291
           K G + DA+ LFD    RDV+TW TM+ GYAKLG +  A  LF+ MP ++ V++ +++ G
Sbjct: 228 KHGRIEDAKGLFDVMPRRDVVTWATMIDGYAKLGFVHKAKSLFDVMPHRDVVAYNSMMGG 287

Query: 292 YTRNGLGQKALELFTRM-MILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRS 350
           Y +N    +ALE+F  M     + P++ T    L A A +  L     +H +++   F  
Sbjct: 288 YVQNKYHMEALEVFYDMEKESHLSPDETTLVIVLSAIAQLGRLSKAVDIHLYIVEKRFLL 347

Query: 351 NTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDM 410
           +  +  +LIDMYSKCG +     VF+  +NK     WN MI  L  HG  E A  +  ++
Sbjct: 348 DGKLGVALIDMYSKCGSIQQAMAVFEGIENKSIDH-WNAMIGGLAVHGLGEAAFDMLMEI 406

Query: 411 VRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGC 470
            +  +KPD IT   +LNAC+HSGLV+EGL  FE M     I P  +H+ C+++LLA++G 
Sbjct: 407 EKRFIKPDYITFVGVLNACSHSGLVKEGLLCFELMRRKHKIEPRLQHYGCMVDLLARSGS 466

Query: 471 SDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVV-DQLIDQNPQSSATHGLLSS 529
            +   + + +MP E +  +W      C  H   +    VV + LI Q   + +++ LLS+
Sbjct: 467 IELAKHLISEMPIEPNDVIWRTFLNACSHHKEFETRELVVAENLILQAGYNPSSYVLLSN 526

Query: 530 IYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAF 570
           +Y++      V +VR ++ ER+ +K    SWIE++ KVH F
Sbjct: 527 MYASFEMWEDVRRVRTMMKERKIEKVPGCSWIELDGKVHEF 567



 Score =  129 bits (324), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 96/374 (25%), Positives = 187/374 (50%), Gaps = 24/374 (6%)

Query: 149 DVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVH 208
           D   WN +I  ++      + L     +   ++  ++FS + +   C +L   K   Q+H
Sbjct: 49  DPFLWNAVIKSHSHGVDPRQALFLLCSMIENNVPVDKFSLSLVTKACSRLGFAKEGMQIH 108

Query: 209 GQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDME 268
           G +  T   S++ + + ++  Y KC  L  AR++FD    RD +++ +M+ GY K G +E
Sbjct: 109 GFLTKTVICSDLFLQNCLIGLYIKCSCLGYARQVFDRMPQRDSVSYNSMIDGYVKCGLIE 168

Query: 269 SASKLFNEMP--EKNPVSWTTLIAGYTRNGLGQK-ALELFTRMMILRIRPNQHTFSSCLC 325
           SA +LF+ MP  +KN +SW ++I GY +   G   A +LF  M      P +      L 
Sbjct: 169 SARELFDLMPKEKKNLISWNSMIGGYAQREDGVDIASKLFAEM------PEKD-----LI 217

Query: 326 ACASIVS--LKHGK-QVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKE 382
           +  S++   +KHG+ +    L     R + +  +++ID Y+K G ++  + +FD+  ++ 
Sbjct: 218 SWNSLIDGYVKHGRIEDAKGLFDVMPRRDVVTWATMIDGYAKLGFVHKAKSLFDVMPHR- 276

Query: 383 NSMLWNTMISALTQHGYDEQAIRLFHDMVRSS-VKPDKITLAVILNACTHSGLVQEGLTY 441
           + + +N+M+    Q+ Y  +A+ +F+DM + S + PD+ TL ++L+A    G + + +  
Sbjct: 277 DVVAYNSMMGGYVQNKYHMEALEVFYDMEKESHLSPDETTLVIVLSAIAQLGRLSKAVDI 336

Query: 442 FESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHG 501
              +     ++  +   A LI++ ++ G   Q M   E +  +   + WNA+ G   +HG
Sbjct: 337 HLYIVEKRFLLDGKLGVA-LIDMYSKCGSIQQAMAVFEGIENKSIDH-WNAMIGGLAVHG 394

Query: 502 NIDMGRKVVDQLID 515
              +G    D L++
Sbjct: 395 ---LGEAAFDMLME 405


>gi|357128066|ref|XP_003565697.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g56570-like [Brachypodium distachyon]
          Length = 564

 Score =  289 bits (740), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 174/586 (29%), Positives = 302/586 (51%), Gaps = 61/586 (10%)

Query: 26  SLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKT 85
           SL + G L  A +  D +  R +      L+        S +L L +R+     L     
Sbjct: 12  SLCAGGALRHARAVFDEMPDRDVVAWTAMLSGYASNGCHSYALDLFRRM-----LAAGVG 66

Query: 86  PTTFLSNHLISMYFKCGSD----------VDARKVFDKIPVKNLFSYNNMLSGYANL--G 133
           P  F  + +++      +D          V  R+  D +P    +  N ++  YA+   G
Sbjct: 67  PNEFTLSSVLTACRGGAADGGCEPSSLHAVAVRRGVDHMP----YVVNALIEAYASCEEG 122

Query: 134 M-MKHARNLFDNMAE-RDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGI 191
           + ++ +R LFD +   R   SW +M+ GY++ G  + GL+ ++ + +  I  + F+ +  
Sbjct: 123 VGVEESRKLFDALGSGRTAASWTSMVAGYSRWGQEQTGLQLFQTMIQDGIELSPFTCSIA 182

Query: 192 LTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDV 251
           L  C  +  L + +Q+H   L   F +N+ +++S++D Y  C  L DARRL         
Sbjct: 183 LHACASIANLCVGQQLHVLCLRKAFNANLTVANSLIDMYCSCANLLDARRL--------- 233

Query: 252 LTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTR-NGLGQKALELFTRMMI 310
                                 F+E+PE+N V+W T+IA Y++ N L   AL+L   M  
Sbjct: 234 ----------------------FDEIPERNLVTWNTMIAWYSQCNHL--MALQLLREM-- 267

Query: 311 LRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLND 370
             ++PN  T +S   ACA + SL+ G+QVHG  +R N+  +  + ++L+DMYSKCG + +
Sbjct: 268 -NLQPNCFTLTSITSACAGLASLRFGQQVHGAALRRNYGKDLQMCNALVDMYSKCGSIAN 326

Query: 371 GRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACT 430
            +++F++ D K+  + W +MI+    +GY  ++I+LF  M+ + V PD +    ++ AC 
Sbjct: 327 AKKMFNMMDYKDK-LSWTSMITGYGMNGYANESIQLFTSMIHAGVHPDHVVFLGLICACN 385

Query: 431 HSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLW 490
           H GLV EG  +F SMT +  + PN+E + C+  LLA+AG   +  + + +MP+  D  +W
Sbjct: 386 HGGLVDEGWNFFRSMTSEYNLQPNKEIYGCVTNLLARAGRLREAFDLIHRMPFAPDETVW 445

Query: 491 NALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINER 550
            AL G C++H N+++GR    ++I+ NP  + T+ LL++IY+A  K       R+L+   
Sbjct: 446 GALLGACKMHKNVELGRLAARKIIEINPDRAKTYVLLANIYAAGNKWGEYADTRRLLRGI 505

Query: 551 QFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQMGE 596
             +KE   SWI++ +K+++F+ +DS  P   +   VL+ LA  M E
Sbjct: 506 GSRKEAGTSWIDVTDKIYSFTTADSSSPQVSLADEVLQILARHMHE 551



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 49/181 (27%), Positives = 95/181 (52%), Gaps = 5/181 (2%)

Query: 255 TTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIR 314
           TT++      G +  A  +F+EMP+++ V+WT +++GY  NG    AL+LF RM+   + 
Sbjct: 7   TTLIKSLCAGGALRHARAVFDEMPDRDVVAWTAMLSGYASNGCHSYALDLFRRMLAAGVG 66

Query: 315 PNQHTFSSCLCACASIVSLK--HGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCG---CLN 369
           PN+ T SS L AC    +        +H   +R        V+++LI+ Y+ C     + 
Sbjct: 67  PNEFTLSSVLTACRGGAADGGCEPSSLHAVAVRRGVDHMPYVVNALIEAYASCEEGVGVE 126

Query: 370 DGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNAC 429
           + R++FD   +   +  W +M++  ++ G ++  ++LF  M++  ++    T ++ L+AC
Sbjct: 127 ESRKLFDALGSGRTAASWTSMVAGYSRWGQEQTGLQLFQTMIQDGIELSPFTCSIALHAC 186

Query: 430 T 430
            
Sbjct: 187 A 187


>gi|357118480|ref|XP_003560982.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g30700-like [Brachypodium distachyon]
          Length = 796

 Score =  289 bits (740), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 182/586 (31%), Positives = 282/586 (48%), Gaps = 75/586 (12%)

Query: 16  PNNCLIQSFLSLISKGQLSEAISSLDLLAQRG-IRLPAETLAFILQQCAESKSLKLGKRV 74
           P+  L  + L+ +S    SEA+ +   +A  G +R  + TLA +L   AE  +  +G+ V
Sbjct: 187 PDTVLWNTLLAGLSG---SEALEAFVRMAGAGSVRPDSTTLASVLPAAAEVANTTMGRCV 243

Query: 75  HL---HLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYAN 131
           H       L Q +   T     LIS+Y KCG                             
Sbjct: 244 HAFGEKCGLAQHEHVVT----GLISLYAKCGD---------------------------- 271

Query: 132 LGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGI 191
              M+ AR+LFD M   D+V++N +I GY+ +G V   ++ +K L    +  +  +   +
Sbjct: 272 ---MECARHLFDRMEGPDLVTYNALISGYSINGMVGSSVELFKELVGMGLRPSSSTLVAL 328

Query: 192 LTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDV 251
           + +        L   +H  V+  G  +N  +S+++                         
Sbjct: 329 IPVHSPFGHEPLAGCLHAHVVKAGLDANAPVSTAL------------------------- 363

Query: 252 LTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMIL 311
              TT+   Y +  DM+SA + F+ MPEK   SW  +I+GY +NGL + A+ LF +M  L
Sbjct: 364 ---TTL---YCRFNDMDSARRAFDAMPEKTMESWNAMISGYAQNGLTEMAVALFQQMQAL 417

Query: 312 RIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDG 371
            +RPN  T SS L ACA + +L  GK VH  +       N  VM++LIDMY KCG + + 
Sbjct: 418 NVRPNPLTISSALSACAQLGALSLGKWVHKIIANEKLELNVYVMTALIDMYVKCGSIAEA 477

Query: 372 RQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTH 431
           R +FD  DNK N + WN MIS    HG   +A++L+ DM+ + + P   T   +L AC+H
Sbjct: 478 RCIFDSMDNK-NVVSWNVMISGYGLHGQGAEALKLYKDMMDAHLHPTSSTFLSVLYACSH 536

Query: 432 SGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEH-DSYLW 490
            GLV+EG T F SMT D GI P  EH  C+++LL +AG   +    + + P       +W
Sbjct: 537 GGLVKEGTTVFRSMTSDYGITPGIEHCTCMVDLLGRAGQLKEAFELISEFPKSAVGPGIW 596

Query: 491 NALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINER 550
            AL G C +H + D+ +    +L +  P+++  + LLS++Y++  +      VRQ    R
Sbjct: 597 GALLGACMVHKDGDLAKLASQKLFELEPENTGYYVLLSNLYTSKKQYSEAAVVRQEAKSR 656

Query: 551 QFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQMGE 596
           +  K    + IEI ++ H F   D  HP  D +Y  LE+L  +M E
Sbjct: 657 KLVKTPGCTLIEIGDRPHVFMAGDRAHPQSDAIYLYLEKLTAKMIE 702



 Score =  119 bits (298), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 79/337 (23%), Positives = 148/337 (43%), Gaps = 40/337 (11%)

Query: 107 ARKVFDKIPVKNLFSYNNMLSG-----YANLGMMKHARNLFDNMAERDVVSWNTMIIGYA 161
           A +    + V + F+ +N ++      Y  L     AR +FD +   D V WNT++ G +
Sbjct: 141 ALRPLHALAVASGFAADNFVASALAKLYFTLSRGNDARKVFDAVPSPDTVLWNTLLAGLS 200

Query: 162 KSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVV 221
            S A+E    F ++    S+  +  + A +L    ++    + R VH      G   +  
Sbjct: 201 GSEALE---AFVRMAGAGSVRPDSTTLASVLPAAAEVANTTMGRCVHAFGEKCGLAQHEH 257

Query: 222 ISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKN 281
           + + ++  YAKCG++  AR LFD  +  D++T+  ++SGY                    
Sbjct: 258 VVTGLISLYAKCGDMECARHLFDRMEGPDLVTYNALISGY-------------------- 297

Query: 282 PVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHG 341
                      + NG+   ++ELF  ++ + +RP+  T  + +   +          +H 
Sbjct: 298 -----------SINGMVGSSVELFKELVGMGLRPSSSTLVALIPVHSPFGHEPLAGCLHA 346

Query: 342 FLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDE 401
            +++    +N  V ++L  +Y +   ++  R+ FD    K     WN MIS   Q+G  E
Sbjct: 347 HVVKAGLDANAPVSTALTTLYCRFNDMDSARRAFDAMPEKTMES-WNAMISGYAQNGLTE 405

Query: 402 QAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEG 438
            A+ LF  M   +V+P+ +T++  L+AC   G +  G
Sbjct: 406 MAVALFQQMQALNVRPNPLTISSALSACAQLGALSLG 442



 Score = 92.8 bits (229), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 83/352 (23%), Positives = 147/352 (41%), Gaps = 47/352 (13%)

Query: 205 RQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKL 264
           R +H   + +GF ++  ++S++   Y      +DAR++FD                    
Sbjct: 143 RPLHALAVASGFAADNFVASALAKLYFTLSRGNDARKVFDA------------------- 183

Query: 265 GDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMM-ILRIRPNQHTFSSC 323
                       +P  + V W TL+AG +    G +ALE F RM     +RP+  T +S 
Sbjct: 184 ------------VPSPDTVLWNTLLAGLS----GSEALEAFVRMAGAGSVRPDSTTLASV 227

Query: 324 LCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKEN 383
           L A A + +   G+ VH F  +     +  V++ LI +Y+KCG +   R +FD  +  + 
Sbjct: 228 LPAAAEVANTTMGRCVHAFGEKCGLAQHEHVVTGLISLYAKCGDMECARHLFDRMEGPD- 286

Query: 384 SMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLT-YF 442
            + +N +IS  + +G    ++ LF ++V   ++P   TL  ++    HS    E L    
Sbjct: 287 LVTYNALISGYSINGMVGSSVELFKELVGMGLRPSSSTLVALIP--VHSPFGHEPLAGCL 344

Query: 443 ESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGN 502
            +     G+  N      L  L  +    D      + MP E     WNA+      +G 
Sbjct: 345 HAHVVKAGLDANAPVSTALTTLYCRFNDMDSARRAFDAMP-EKTMESWNAMISGYAQNGL 403

Query: 503 IDMGRKVVDQL----IDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINER 550
            +M   +  Q+    +  NP + ++     +   AL  G+ V K+  + NE+
Sbjct: 404 TEMAVALFQQMQALNVRPNPLTISSALSACAQLGALSLGKWVHKI--IANEK 453


>gi|302776320|ref|XP_002971335.1| hypothetical protein SELMODRAFT_94945 [Selaginella moellendorffii]
 gi|300161317|gb|EFJ27933.1| hypothetical protein SELMODRAFT_94945 [Selaginella moellendorffii]
          Length = 614

 Score =  289 bits (739), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 161/539 (29%), Positives = 282/539 (52%), Gaps = 50/539 (9%)

Query: 10  INRKNLPNNCLIQSFLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLK 69
           + R  +  N ++ ++      G   EA+    L+   GI+  A T   +L         +
Sbjct: 119 VERNRVSWNAMLAAY---AQNGHCEEAVRLYRLMCFEGIKPDATTFVSVLD--GWKGEGE 173

Query: 70  LGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGY 129
            G+R+H  +  +   + TT L+N L+SMY                               
Sbjct: 174 HGRRIHDQVVESGFGSNTT-LANALVSMY------------------------------- 201

Query: 130 ANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFA 189
            + G +  AR +FD +AE+ VVSWN M+  YA++G   E +  +    +  ++ +  SF 
Sbjct: 202 GSGGRVDDARYVFDGIAEKTVVSWNAMLTAYAQNGRYGEAVDLFW---KMDVAPDTVSFV 258

Query: 190 GILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDAR 249
            +L  C+ +EE +L   VH  +  +GF   V++S+S+V+ Y +   L +A++ F++   R
Sbjct: 259 NVLGACMDIEEGRL---VHEHIKASGFPVGVLVSTSLVNMYGRFLRLEEAKQCFEQARER 315

Query: 250 DVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMM 309
           D + W +MV  YA+ G ME A  +F+ +  K+ V WT L+  Y+RN   + AL ++  M 
Sbjct: 316 DRVCWNSMVGAYAQNGCMEEAKAVFDRVASKDIVLWTALLTAYSRNEDAKGALLVYRNMD 375

Query: 310 ILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLN 369
           +  +  N+ TFSS +  CA   +L  G++VH   +   +  + IV ++L+D YSKC  ++
Sbjct: 376 LEGMEKNRFTFSSIVSVCADAEALAEGQKVHLHTVSVGYDKDVIVGTTLVDFYSKCHDVD 435

Query: 370 DGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDM------VRSSVKPDKITLA 423
             R VFD  + K+  + WN MI+   ++G+  +A+RL+  M      +   + PD++T  
Sbjct: 436 TARSVFDGIEGKD-IVTWNVMITGFVRNGHGREAVRLYQKMDLPPDSLTMGIMPDELTFL 494

Query: 424 VILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPY 483
            +L AC+H G +Q+GL  F S   D GI  N +H+ C++++L + G  ++    L +MP+
Sbjct: 495 SVLFACSHGGSIQQGLDLFLSAGVDYGIATNTKHYVCVVDILGRVGRLEEAQEVLNRMPF 554

Query: 484 EHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEK 542
           + +   W  L G CRIH + + GR+  D +I+ +PQ++A + LLS+++SA G+GR+  K
Sbjct: 555 QANDVAWMTLLGACRIHRDFEQGRRAADYVIELDPQNAAPYALLSTMFSAAGRGRMPAK 613



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 119/428 (27%), Positives = 208/428 (48%), Gaps = 62/428 (14%)

Query: 56  AFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIP 115
           A IL+ CA ++ L   K+    +          +L N L+  Y KCGS  DAR+VFD+I 
Sbjct: 16  ASILRDCASTRDLTAAKQAQWEIA-RDGFGGDRYLGNLLVQAYGKCGSVRDAREVFDRIQ 74

Query: 116 VKNLFSYNNMLSGYAN-------LGMM-------KHARNLFDNMAERDVVSWNTMIIGYA 161
            +N+FS+  ML  YA+       LG+M       + A+ +F  + ER+ VSWN M+  YA
Sbjct: 75  RRNIFSWTIMLGAYADNGHGREALGLMYGKCGHLEEAKAVFATLVERNRVSWNAMLAAYA 134

Query: 162 KSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVV 221
           ++G  EE ++ Y+++    I  +  +F  +L       E +  R++H QV+ +GF SN  
Sbjct: 135 QNGHCEEAVRLYRLMCFEGIKPDATTFVSVLDGWKG--EGEHGRRIHDQVVESGFGSNTT 192

Query: 222 ISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKN 281
           +++++V  Y   G + DAR +FD    + V++W  M++ YA+                  
Sbjct: 193 LANALVSMYGSGGRVDDARYVFDGIAEKTVVSWNAMLTAYAQ------------------ 234

Query: 282 PVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHG 341
                        NG   +A++LF +M    + P+  +F + L AC  I   + G+ VH 
Sbjct: 235 -------------NGRYGEAVDLFWKM---DVAPDTVSFVNVLGACMDI---EEGRLVHE 275

Query: 342 FLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDE 401
            +  + F    +V +SL++MY +   L + +Q F+    ++  + WN+M+ A  Q+G  E
Sbjct: 276 HIKASGFPVGVLVSTSLVNMYGRFLRLEEAKQCFEQARERDR-VCWNSMVGAYAQNGCME 334

Query: 402 QAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDL-GIIPNQEHHAC 460
           +A  +F D V S    D +    +L A + +   +  L  + +M  DL G+  N+   + 
Sbjct: 335 EAKAVF-DRVAS---KDIVLWTALLTAYSRNEDAKGALLVYRNM--DLEGMEKNRFTFSS 388

Query: 461 LIELLAQA 468
           ++ + A A
Sbjct: 389 IVSVCADA 396



 Score =  152 bits (384), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 97/351 (27%), Positives = 166/351 (47%), Gaps = 37/351 (10%)

Query: 187 SFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDET 246
           S A IL  C    +L   +Q   ++   GF  +  + + +V AY KCG + DAR +FD  
Sbjct: 14  SHASILRDCASTRDLTAAKQAQWEIARDGFGGDRYLGNLLVQAYGKCGSVRDAREVFDRI 73

Query: 247 DARDVLTWTTMVSGYA--------------KLGDMESASKLFNEMPEKNPVSWTTLIAGY 292
             R++ +WT M+  YA              K G +E A  +F  + E+N VSW  ++A Y
Sbjct: 74  QRRNIFSWTIMLGAYADNGHGREALGLMYGKCGHLEEAKAVFATLVERNRVSWNAMLAAY 133

Query: 293 TRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNT 352
            +NG  ++A+ L+  M    I+P+  TF S L         +HG+++H  ++ + F SNT
Sbjct: 134 AQNGHCEEAVRLYRLMCFEGIKPDATTFVSVLDGWKG--EGEHGRRIHDQVVESGFGSNT 191

Query: 353 IVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVR 412
            + ++L+ MY   G ++D R VFD    K   + WN M++A  Q+G   +A+ LF  M  
Sbjct: 192 TLANALVSMYGSGGRVDDARYVFDGIAEK-TVVSWNAMLTAYAQNGRYGEAVDLFWKM-- 248

Query: 413 SSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHD---LGIIPNQE---HHACLIELLA 466
             V PD ++   +L AC     ++EG    E +      +G++ +      +   + L  
Sbjct: 249 -DVAPDTVSFVNVLGACMD---IEEGRLVHEHIKASGFPVGVLVSTSLVNMYGRFLRLEE 304

Query: 467 QAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQN 517
              C +Q          E D   WN++ G    +G ++  + V D++  ++
Sbjct: 305 AKQCFEQ--------ARERDRVCWNSMVGAYAQNGCMEEAKAVFDRVASKD 347


>gi|356545826|ref|XP_003541335.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Glycine max]
          Length = 607

 Score =  289 bits (739), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 157/462 (33%), Positives = 264/462 (57%), Gaps = 8/462 (1%)

Query: 133 GMMKHARNLFDNMAERDVVSWNTMIIGY-AKSGAVEEGLKFYKVLRRFSISCNEFSFAGI 191
           G + +A  LF  +   D   +NT+   + + S      L FY  + +  ++ N F+F  +
Sbjct: 50  GDINYALKLFTTLPNPDTFLYNTLFKAFFSLSQTPSLSLLFYSHMLQHCVTPNAFTFPSL 109

Query: 192 LTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDV 251
           +  C KLEE    +Q+H  VL  GF  +    ++++  Y   G L DARR+F      +V
Sbjct: 110 IRAC-KLEEE--AKQLHAHVLKFGFGGDTYALNNLIHVYFAFGSLDDARRVFCTMSDPNV 166

Query: 252 LTWTTMVSGYAKLGDMESASKLFNEMP-EKNPVSWTTLIAGYTRNGLGQKALELFTRMMI 310
           ++WT++VSGY++ G ++ A ++F  MP +KN VSW  +IA + +    ++A  LF RM +
Sbjct: 167 VSWTSLVSGYSQWGLVDEAFRVFELMPCKKNSVSWNAMIACFVKGNRFREAFALFRRMRV 226

Query: 311 -LRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLN 369
             ++  ++   ++ L AC  + +L+ G  +H ++ +T    ++ + +++IDMY KCGCL+
Sbjct: 227 EKKMELDRFVAATMLSACTGVGALEQGMWIHKYVEKTGIVLDSKLATTIIDMYCKCGCLD 286

Query: 370 DGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSS-VKPDKITLAVILNA 428
               VF     K  S  WN MI     HG  E AIRLF +M   + V PD IT   +L A
Sbjct: 287 KAFHVFCGLKVKRVSS-WNCMIGGFAMHGKGEDAIRLFKEMEEEAMVAPDSITFVNVLTA 345

Query: 429 CTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSY 488
           C HSGLV+EG  YF  M    GI P +EH+ C+++LLA+AG  ++    +++MP   D+ 
Sbjct: 346 CAHSGLVEEGWYYFRYMVDVHGIDPTKEHYGCMVDLLARAGRLEEAKKVIDEMPMSPDAA 405

Query: 489 LWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLIN 548
           +  AL G CRIHGN+++G +V +++I+ +P++S  + +L ++Y++ GK   V  VR+L++
Sbjct: 406 VLGALLGACRIHGNLELGEEVGNRVIELDPENSGRYVILGNMYASCGKWEQVAGVRKLMD 465

Query: 549 ERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQL 590
           +R  KKE   S IE+E  V+ F      HP+ + +Y+ + ++
Sbjct: 466 DRGVKKEPGFSMIEMEGVVNEFVAGGRDHPLAEAIYAKIYEM 507



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 101/394 (25%), Positives = 176/394 (44%), Gaps = 45/394 (11%)

Query: 14  NLPN------NCLIQSFLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKS 67
            LPN      N L ++F SL     LS    S  L  Q  +   A T   +++ C   K 
Sbjct: 61  TLPNPDTFLYNTLFKAFFSLSQTPSLSLLFYSHML--QHCVTPNAFTFPSLIRAC---KL 115

Query: 68  LKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLS 127
            +  K++H H+ L       T+  N+LI +YF  GS  DAR+VF  +   N+ S+ +++S
Sbjct: 116 EEEAKQLHAHV-LKFGFGGDTYALNNLIHVYFAFGSLDDARRVFCTMSDPNVVSWTSLVS 174

Query: 128 GYANLGMMKHARNLFDNM-AERDVVSWNTMIIGYAKSGAVEEGLKFYKVLR-RFSISCNE 185
           GY+  G++  A  +F+ M  +++ VSWN MI  + K     E    ++ +R    +  + 
Sbjct: 175 GYSQWGLVDEAFRVFELMPCKKNSVSWNAMIACFVKGNRFREAFALFRRMRVEKKMELDR 234

Query: 186 FSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDE 245
           F  A +L+ C  +  L+    +H  V  TG + +  ++++I+D Y KCG L  A  +F  
Sbjct: 235 FVAATMLSACTGVGALEQGMWIHKYVEKTGIVLDSKLATTIIDMYCKCGCLDKAFHVFCG 294

Query: 246 TDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELF 305
              + V +W  M+ G+A  G  E A +LF EM E+  V+                     
Sbjct: 295 LKVKRVSSWNCMIGGFAMHGKGEDAIRLFKEMEEEAMVA--------------------- 333

Query: 306 TRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIV-MSSLIDMYSK 364
                    P+  TF + L ACA    ++ G     +++  +    T      ++D+ ++
Sbjct: 334 ---------PDSITFVNVLTACAHSGLVEEGWYYFRYMVDVHGIDPTKEHYGCMVDLLAR 384

Query: 365 CGCLNDGRQVFDLTDNKENSMLWNTMISALTQHG 398
            G L + ++V D      ++ +   ++ A   HG
Sbjct: 385 AGRLEEAKKVIDEMPMSPDAAVLGALLGACRIHG 418



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 67/273 (24%), Positives = 122/273 (44%), Gaps = 38/273 (13%)

Query: 262 AKLGDMESASKLFNEMPEKNPVSWTTLI-AGYTRNGLGQKALELFTRMMILRIRPNQHTF 320
           +K GD+  A KLF  +P  +   + TL  A ++ +     +L  ++ M+   + PN  TF
Sbjct: 47  SKHGDINYALKLFTTLPNPDTFLYNTLFKAFFSLSQTPSLSLLFYSHMLQHCVTPNAFTF 106

Query: 321 SSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGR-------- 372
            S + AC      +  KQ+H  +++  F  +T  +++LI +Y   G L+D R        
Sbjct: 107 PSLIRACK---LEEEAKQLHAHVLKFGFGGDTYALNNLIHVYFAFGSLDDARRVFCTMSD 163

Query: 373 -----------------------QVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHD 409
                                  +VF+L   K+NS+ WN MI+   +     +A  LF  
Sbjct: 164 PNVVSWTSLVSGYSQWGLVDEAFRVFELMPCKKNSVSWNAMIACFVKGNRFREAFALFRR 223

Query: 410 M-VRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQA 468
           M V   ++ D+   A +L+ACT  G +++G+ +        GI+ + +    +I++  + 
Sbjct: 224 MRVEKKMELDRFVAATMLSACTGVGALEQGM-WIHKYVEKTGIVLDSKLATTIIDMYCKC 282

Query: 469 GCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHG 501
           GC D+  +    +  +  S  WN + G   +HG
Sbjct: 283 GCLDKAFHVFCGLKVKRVSS-WNCMIGGFAMHG 314


>gi|225464746|ref|XP_002265138.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22150,
           chloroplastic [Vitis vinifera]
          Length = 825

 Score =  289 bits (739), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 174/565 (30%), Positives = 289/565 (51%), Gaps = 70/565 (12%)

Query: 37  ISSLDLLAQ----RGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSN 92
           I ++DL  Q        L   T    L   ++ + L+LG+++H ++ L         + N
Sbjct: 303 IEAIDLFVQVMESEQFVLDDVTFLSALTAISQLQWLELGRQLHAYI-LKSSTILQVVILN 361

Query: 93  HLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVS 152
            +I MY +CGS   + KVF                                NM ERDVV+
Sbjct: 362 AIIVMYSRCGSIGTSFKVFS-------------------------------NMLERDVVT 390

Query: 153 WNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVL 212
           WNTM+  + ++G  +EGL     +++     +  +   +L++   L   ++ +Q H  ++
Sbjct: 391 WNTMVSAFVQNGLDDEGLMLVFAMQKQGFMVDSVTLTALLSLASNLRSQEIGKQAHAYLI 450

Query: 213 VTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASK 272
             G +    + S ++D YAK G ++ A++LF++    D                      
Sbjct: 451 RHG-IQFEGMDSYLIDMYAKSGLITTAQQLFEKNSDYD---------------------- 487

Query: 273 LFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVS 332
                  ++  +W  +IAGYT+NGL ++   +F +M+   +RPN  T +S L AC  + +
Sbjct: 488 -------RDEATWNAMIAGYTQNGLSEEGFAVFRKMIEQNVRPNAVTLASILPACNPMGT 540

Query: 333 LKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMIS 392
           +  GKQ+HGF IR     N  V ++L+DMYSK G +     VF  T  K NS+ + TMIS
Sbjct: 541 IGLGKQIHGFAIRCFLNRNVFVGTALLDMYSKSGAITYAENVFAETLEK-NSVTYTTMIS 599

Query: 393 ALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGII 452
           +  QHG  E+A+ LFH M+ S +KPD +T   IL+AC+++GLV EGL  F+SM  +  I 
Sbjct: 600 SYGQHGMGERALSLFHAMLGSGIKPDSVTFVAILSACSYAGLVDEGLRIFQSMEREYKIQ 659

Query: 453 PNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSY-LWNALHGVCRIHGNIDMGRKVVD 511
           P+ EH+ C+ ++L + G   +    ++ +  E +++ +W +L G CRIHG  ++G+ V +
Sbjct: 660 PSAEHYCCVADMLGRVGRVVEAYEFVKGLGEEGNTFGIWGSLLGACRIHGEFELGKVVAN 719

Query: 512 QLIDQNPQSSAT--HGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHA 569
           +L++    SS T  H LLS+IY+A G    V++VR+ + ++   KE   SW+E+   V+ 
Sbjct: 720 KLLEMEKGSSLTGYHVLLSNIYAAEGNWDNVDRVRKEMRQKGLMKEAGCSWVEVAGHVNC 779

Query: 570 FSVSDSLHPMRDVLYSVLEQLAGQM 594
           F   D  HP    +Y +LE+LA +M
Sbjct: 780 FMSRDHKHPQCAEIYQMLEKLAMEM 804



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 143/582 (24%), Positives = 262/582 (45%), Gaps = 98/582 (16%)

Query: 49  RLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDAR 108
           +  + T +  L+ CA+++SLKLGK +H H+ L      +  + N L++MY  C ++V   
Sbjct: 101 KFDSYTFSSTLKACAQARSLKLGKALHCHV-LRSHFGSSRIVYNSLLNMYSTCLTEVPY- 158

Query: 109 KVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEE 168
                  +   + +NN              R +FD M +R+VV+WNTMI  Y K+  + E
Sbjct: 159 -------LGTAYDFNNC----------DLVRRVFDTMRKRNVVAWNTMISWYVKTERLIE 201

Query: 169 GLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTG--FLSNVVISSSI 226
             K ++ + R  I     SF  +     ++ +      ++G V+  G  F+ +  + SS 
Sbjct: 202 AFKMFRTMMRMGIRPTPVSFVNVFPAVWRMSDYDNANVLYGLVVKLGSDFVDDFFVVSSA 261

Query: 227 VDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWT 286
           +  YA+ G +  AR +FD    R+   W TM                             
Sbjct: 262 IFMYAELGCVDFAREIFDCCLERNTEVWNTM----------------------------- 292

Query: 287 TLIAGYTRNGLGQKALELFTRMM-ILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIR 345
             I GY +N    +A++LF ++M   +   +  TF S L A + +  L+ G+Q+H ++++
Sbjct: 293 --IGGYVQNNCPIEAIDLFVQVMESEQFVLDDVTFLSALTAISQLQWLELGRQLHAYILK 350

Query: 346 TNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIR 405
           ++     ++++++I MYS+CG +    +VF     ++  + WNTM+SA  Q+G D++ + 
Sbjct: 351 SSTILQVVILNAIIVMYSRCGSIGTSFKVFSNMLERD-VVTWNTMVSAFVQNGLDDEGLM 409

Query: 406 LFHDMVRSSVKPDKITLAVILNACT-----------HSGLVQEGLTYFESMTHDLGIIPN 454
           L   M +     D +TL  +L+  +           H+ L++ G+  FE M         
Sbjct: 410 LVFAMQKQGFMVDSVTLTALLSLASNLRSQEIGKQAHAYLIRHGIQ-FEGM--------- 459

Query: 455 QEHHACLIELLAQAGCSDQLMNQLEK-MPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQL 513
               + LI++ A++G         EK   Y+ D   WNA+      +G  + G  V  ++
Sbjct: 460 ---DSYLIDMYAKSGLITTAQQLFEKNSDYDRDEATWNAMIAGYTQNGLSEEGFAVFRKM 516

Query: 514 IDQNPQSSATHGLLSSIYSA------LGKGRLVE--KVRQLINERQFKKEQAISWIEIEN 565
           I+QN + +A    L+SI  A      +G G+ +    +R  +N   F      + +++ +
Sbjct: 517 IEQNVRPNAV--TLASILPACNPMGTIGLGKQIHGFAIRCFLNRNVFV---GTALLDMYS 571

Query: 566 KVHAFSVSDSLHP----MRDVLYSVLEQLAGQ--MGEDAPSL 601
           K  A + ++++         V Y+ +    GQ  MGE A SL
Sbjct: 572 KSGAITYAENVFAETLEKNSVTYTTMISSYGQHGMGERALSL 613



 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 132/516 (25%), Positives = 223/516 (43%), Gaps = 97/516 (18%)

Query: 78  LKLTQRKTPTTFL--------------SNHLISMYFKCGSDVDARKVFDKIPVKNLFSYN 123
           +++  R TP +F+              +N L  +  K GSD           V + F  +
Sbjct: 210 MRMGIRPTPVSFVNVFPAVWRMSDYDNANVLYGLVVKLGSDF----------VDDFFVVS 259

Query: 124 NMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLK-FYKVLRRFSIS 182
           + +  YA LG +  AR +FD   ER+   WNTMI GY ++    E +  F +V+      
Sbjct: 260 SAIFMYAELGCVDFAREIFDCCLERNTEVWNTMIGGYVQNNCPIEAIDLFVQVMESEQFV 319

Query: 183 CNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRL 242
            ++ +F   LT   +L+ L+L RQ+H  +L +  +  VVI ++I+  Y++CG +  + ++
Sbjct: 320 LDDVTFLSALTAISQLQWLELGRQLHAYILKSSTILQVVILNAIIVMYSRCGSIGTSFKV 379

Query: 243 FDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKAL 302
           F     RDV+TW TMVS + +                               NGL  + L
Sbjct: 380 FSNMLERDVVTWNTMVSAFVQ-------------------------------NGLDDEGL 408

Query: 303 ELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMY 362
            L   M       +  T ++ L   +++ S + GKQ H +LIR   +   +  S LIDMY
Sbjct: 409 MLVFAMQKQGFMVDSVTLTALLSLASNLRSQEIGKQAHAYLIRHGIQFEGMD-SYLIDMY 467

Query: 363 SKCGCLNDGRQVFDL-TDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKIT 421
           +K G +   +Q+F+  +D   +   WN MI+  TQ+G  E+   +F  M+  +V+P+ +T
Sbjct: 468 AKSGLITTAQQLFEKNSDYDRDEATWNAMIAGYTQNGLSEEGFAVFRKMIEQNVRPNAVT 527

Query: 422 LAVILNACTHSGLVQEG-------------------------------LTYFESMTHDLG 450
           LA IL AC   G +  G                               +TY E++  +  
Sbjct: 528 LASILPACNPMGTIGLGKQIHGFAIRCFLNRNVFVGTALLDMYSKSGAITYAENVFAET- 586

Query: 451 IIPNQEHHACLIELLAQAGCSDQLMNQLEKM---PYEHDSYLWNALHGVCRIHGNIDMGR 507
           +  N   +  +I    Q G  ++ ++    M     + DS  + A+   C   G +D G 
Sbjct: 587 LEKNSVTYTTMISSYGQHGMGERALSLFHAMLGSGIKPDSVTFVAILSACSYAGLVDEGL 646

Query: 508 KVVDQL-IDQNPQSSATHGLLSSIYSALGK-GRLVE 541
           ++   +  +   Q SA H     +   LG+ GR+VE
Sbjct: 647 RIFQSMEREYKIQPSAEH--YCCVADMLGRVGRVVE 680



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 82/304 (26%), Positives = 141/304 (46%), Gaps = 48/304 (15%)

Query: 126 LSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRF-SISCN 184
           LS     G    A +LFD++     V WNT+IIG+  +    + L FY  +R   S   +
Sbjct: 44  LSHLCRQGHPHQALHLFDSIPRPTTVLWNTIIIGFICNNMPIDALLFYARMRASPSPKFD 103

Query: 185 EFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKC-------GELS 237
            ++F+  L  C +   LKL + +H  VL + F S+ ++ +S+++ Y+ C       G   
Sbjct: 104 SYTFSSTLKACAQARSLKLGKALHCHVLRSHFGSSRIVYNSLLNMYSTCLTEVPYLGTAY 163

Query: 238 D------ARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAG 291
           D       RR+FD    R+V+ W TM+S Y K        +L                  
Sbjct: 164 DFNNCDLVRRVFDTMRKRNVVAWNTMISWYVK------TERLI----------------- 200

Query: 292 YTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIR--TNFR 349
                   +A ++F  MM + IRP   +F +   A   +    +   ++G +++  ++F 
Sbjct: 201 --------EAFKMFRTMMRMGIRPTPVSFVNVFPAVWRMSDYDNANVLYGLVVKLGSDFV 252

Query: 350 SNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHD 409
            +  V+SS I MY++ GC++  R++FD    + N+ +WNTMI    Q+    +AI LF  
Sbjct: 253 DDFFVVSSAIFMYAELGCVDFAREIFDCCLER-NTEVWNTMIGGYVQNNCPIEAIDLFVQ 311

Query: 410 MVRS 413
           ++ S
Sbjct: 312 VMES 315



 Score = 95.5 bits (236), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 78/258 (30%), Positives = 120/258 (46%), Gaps = 41/258 (15%)

Query: 265 GDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRP----NQHTF 320
           G    A  LF+ +P    V W T+I G+  N +   AL  + RM   R  P    + +TF
Sbjct: 51  GHPHQALHLFDSIPRPTTVLWNTIIIGFICNNMPIDALLFYARM---RASPSPKFDSYTF 107

Query: 321 SSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKC-------GCLNDG-- 371
           SS L ACA   SLK GK +H  ++R++F S+ IV +SL++MYS C       G   D   
Sbjct: 108 SSTLKACAQARSLKLGKALHCHVLRSHFGSSRIVYNSLLNMYSTCLTEVPYLGTAYDFNN 167

Query: 372 ----RQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVIL- 426
               R+VFD T  K N + WNTMIS   +     +A ++F  M+R  ++P  ++   +  
Sbjct: 168 CDLVRRVFD-TMRKRNVVAWNTMISWYVKTERLIEAFKMFRTMMRMGIRPTPVSFVNVFP 226

Query: 427 ---------NACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQ 477
                    NA    GLV +  + F     D  ++ +       I + A+ GC D    +
Sbjct: 227 AVWRMSDYDNANVLYGLVVKLGSDF---VDDFFVVSSA------IFMYAELGCVD-FARE 276

Query: 478 LEKMPYEHDSYLWNALHG 495
           +     E ++ +WN + G
Sbjct: 277 IFDCCLERNTEVWNTMIG 294



 Score = 63.2 bits (152), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 43/152 (28%), Positives = 73/152 (48%), Gaps = 5/152 (3%)

Query: 31  GQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFL 90
           G   E  +    + ++ +R  A TLA IL  C    ++ LGK++H    +        F+
Sbjct: 504 GLSEEGFAVFRKMIEQNVRPNAVTLASILPACNPMGTIGLGKQIH-GFAIRCFLNRNVFV 562

Query: 91  SNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNM----A 146
              L+ MY K G+   A  VF +   KN  +Y  M+S Y   GM + A +LF  M     
Sbjct: 563 GTALLDMYSKSGAITYAENVFAETLEKNSVTYTTMISSYGQHGMGERALSLFHAMLGSGI 622

Query: 147 ERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRR 178
           + D V++  ++   + +G V+EGL+ ++ + R
Sbjct: 623 KPDSVTFVAILSACSYAGLVDEGLRIFQSMER 654


>gi|242076234|ref|XP_002448053.1| hypothetical protein SORBIDRAFT_06g020256 [Sorghum bicolor]
 gi|241939236|gb|EES12381.1| hypothetical protein SORBIDRAFT_06g020256 [Sorghum bicolor]
          Length = 693

 Score =  289 bits (739), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 159/537 (29%), Positives = 271/537 (50%), Gaps = 64/537 (11%)

Query: 54  TLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDK 113
           T+A  L+ C+   +L +G+ +  +  + +      F+ + LI MY  C     A+ +FD 
Sbjct: 121 TVACALKSCSRMCTLDVGRGIQAY-AVKRGLMADRFVLSSLIHMYASCRDVAAAQLLFDA 179

Query: 114 IPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFY 173
           +                                E  VV WN +I  Y K+G   E ++ +
Sbjct: 180 V-------------------------------EENGVVMWNAIITAYMKNGNWMEVVEMF 208

Query: 174 KVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKC 233
           K +    ++ +E +   ++T C ++ + KL + V   V   G + N  + ++++D YAKC
Sbjct: 209 KGMLEVGVAFDEITLVSVVTACGRIGDAKLGKWVAEYVDEKGLVRNRNLMTALIDMYAKC 268

Query: 234 GELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYT 293
           GEL  ARRLFD   +RDV+ W+ M+SGY                               T
Sbjct: 269 GELGKARRLFDGMQSRDVVAWSAMISGY-------------------------------T 297

Query: 294 RNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTI 353
           +    ++AL LF+ M +  + PN  T  S L ACA + +L+ GK VH ++ R       I
Sbjct: 298 QADQCREALALFSEMQLAEVEPNDVTMVSVLSACAVLGALETGKWVHSYIRRKRLSLTII 357

Query: 354 VMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRS 413
           + ++L+D Y+KCGC++D  + F+    K NS  W  +I  +  +G   +A+ LF  M ++
Sbjct: 358 LGTALVDFYAKCGCIDDAVEAFESMPVK-NSWTWTALIKGMATNGRGREALELFSSMRKA 416

Query: 414 SVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQ 473
           S++P  +T   +L AC+HS LV+EG  +F+SMT D GI P  EH+ C+++LL +AG  D+
Sbjct: 417 SIEPTDVTFIGVLMACSHSCLVEEGRRHFDSMTQDYGIKPRAEHYGCVVDLLGRAGLIDE 476

Query: 474 LMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSA 533
               +  MP E ++ +W AL   C +H N+++G + + Q++  NP  S  + LLS+IY++
Sbjct: 477 AYQFIRTMPIEPNAVIWRALLSSCAVHKNVEIGEEALKQIVSLNPSHSGDYILLSNIYAS 536

Query: 534 LGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQL 590
           +G+ +    +R+ + +R  +K    S IE++  V  F   DS HP    +Y  +E++
Sbjct: 537 VGQWKNAAMIRKEMKDRGIEKTPGCSLIELDGVVVEFFAEDSDHPQLKEIYQKVEEM 593



 Score =  129 bits (325), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 97/374 (25%), Positives = 174/374 (46%), Gaps = 45/374 (12%)

Query: 127 SGYANLGMMKHARNLFDNMAERDVVS---WNTMIIGYAKSGAVEEGLK-FYKVLRRFSIS 182
           +  A+  ++ +A +LF  +  R  +S   +N ++     +G  E+ L  F ++L   S+ 
Sbjct: 58  AAAASPTLLPYAVSLF-RLGPRPPLSTPCYNVLMRALLHAGHPEDALHLFVEMLDVASVC 116

Query: 183 CNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRL 242
            ++ + A  L  C ++  L + R +    +  G +++  + SS++  YA C         
Sbjct: 117 PDQHTVACALKSCSRMCTLDVGRGIQAYAVKRGLMADRFVLSSLIHMYASC--------- 167

Query: 243 FDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKAL 302
                 RDV                 +A  LF+ + E   V W  +I  Y +NG   + +
Sbjct: 168 ------RDV----------------AAAQLLFDAVEENGVVMWNAIITAYMKNGNWMEVV 205

Query: 303 ELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMY 362
           E+F  M+ + +  ++ T  S + AC  I   K GK V  ++       N  +M++LIDMY
Sbjct: 206 EMFKGMLEVGVAFDEITLVSVVTACGRIGDAKLGKWVAEYVDEKGLVRNRNLMTALIDMY 265

Query: 363 SKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITL 422
           +KCG L   R++FD   ++ + + W+ MIS  TQ     +A+ LF +M  + V+P+ +T+
Sbjct: 266 AKCGELGKARRLFDGMQSR-DVVAWSAMISGYTQADQCREALALFSEMQLAEVEPNDVTM 324

Query: 423 AVILNACTHSGLVQEGL---TYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLE 479
             +L+AC   G ++ G    +Y       L II        L++  A+ GC D  +   E
Sbjct: 325 VSVLSACAVLGALETGKWVHSYIRRKRLSLTIILG----TALVDFYAKCGCIDDAVEAFE 380

Query: 480 KMPYEHDSYLWNAL 493
            MP + +S+ W AL
Sbjct: 381 SMPVK-NSWTWTAL 393


>gi|357520433|ref|XP_003630505.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355524527|gb|AET04981.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 998

 Score =  289 bits (739), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 165/561 (29%), Positives = 291/561 (51%), Gaps = 72/561 (12%)

Query: 39  SLDL---LAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLI 95
           +LDL   +A+ G    A     +L  C    +L+ G++VH +  +        F+ N LI
Sbjct: 327 ALDLFVEMARMGWNPDAFGCTSVLNSCGSLVALEKGRQVHAY-AIKVNIDNDDFVKNGLI 385

Query: 96  SMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNT 155
            MY KC S  DA                               R +F+ MA  D+VS+N 
Sbjct: 386 DMYAKCDSLTDA-------------------------------RKVFNLMAAIDLVSYNA 414

Query: 156 MIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTG 215
           MI GY++   + E L  ++ +R    S     F  +L +   L  L+L+ Q+HG ++  G
Sbjct: 415 MIEGYSRQDKLCEALDLFREMRLSLSSPTLLIFVSLLGVSASLYHLELSNQIHGLIIKYG 474

Query: 216 FLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFN 275
              +    S+++D Y+KC  + DAR +F+                               
Sbjct: 475 VSLDEFAGSALIDVYSKCSRVGDARLVFE------------------------------- 503

Query: 276 EMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKH 335
           E+ +K+ V WT + +GYT+    +++L+L+  + + R++PN+ TF++ + A ++I SL+H
Sbjct: 504 EIQDKDIVVWTAMFSGYTQQSENEESLKLYKCLQMSRLKPNEFTFAAVITAASNIASLRH 563

Query: 336 GKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALT 395
           G+Q H  +I+  F  +  V ++L+DMY+K G + +  + F ++ N +++  WN+MI+   
Sbjct: 564 GQQFHNQVIKMGFDDDPFVANTLVDMYAKSGSIEEAHKAF-ISTNWKDTACWNSMIATYA 622

Query: 396 QHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQ 455
           QHG  E+A+++F DM+   +KP+ +T   +L+AC+H+GL+  G  +F+SM+   GI P  
Sbjct: 623 QHGEAEKALQVFEDMIMEGLKPNYVTFVGVLSACSHTGLLDLGFDHFDSMSQ-FGIEPGI 681

Query: 456 EHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLID 515
           EH+ C++ LL +AG   +    +EKMP +  + +W +L   CR+ GN+++G    +  I 
Sbjct: 682 EHYVCMVSLLGRAGKLYEAKEFIEKMPIKQAAVVWRSLLSACRVSGNVELGTYAAEMAIS 741

Query: 516 QNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDS 575
            NP  S ++ LLS+I+++ G    V ++R+ ++     KE   SWIE+ N++H F   D+
Sbjct: 742 CNPADSGSYVLLSNIFASKGMWVNVRRLREKMDISGVVKEPGCSWIEVNNEIHKFIAKDT 801

Query: 576 LH----PMRDVLYSVLEQLAG 592
            H    P+  VL ++L Q+ G
Sbjct: 802 AHRDSAPISLVLDNLLLQIKG 822



 Score =  169 bits (429), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 99/351 (28%), Positives = 176/351 (50%), Gaps = 34/351 (9%)

Query: 80  LTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHAR 139
           + QRK     L+N L S +  C   + ++ V       ++F  N +L  Y+ L ++ HA 
Sbjct: 36  IEQRKIGRE-LANLLQSPHIPCCKKIHSKIVVFGFHKHDIFLVNTLLHAYSKLNLVNHAN 94

Query: 140 NLFDNMAERDVVSWNTMIIGYAK-SGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKL 198
            LFD M+ +++V+W++M+  Y   S  +E  + F + +R  +   NE+  A ++  C + 
Sbjct: 95  KLFDTMSHKNLVTWSSMVSMYTHHSHCLEALMLFVQFMRSCNEKPNEYILASVVRACTQF 154

Query: 199 EELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMV 258
             L    Q+HG V+  G++ +V + +S++D Y K   + DAR LFD    +   TWTT++
Sbjct: 155 GGLNPALQIHGLVVKGGYVQDVYVCTSLIDFYTKHACIDDARLLFDGLQVKTSFTWTTII 214

Query: 259 SGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQH 318
           +GY+K G  + + KLF++M E +                               + P+++
Sbjct: 215 AGYSKQGRSQVSLKLFDQMKEGH-------------------------------VCPDKY 243

Query: 319 TFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLT 378
             SS L AC  +  L+ GKQ+H +++R+    +  +++  ID Y KC  +  GR++FD  
Sbjct: 244 VLSSVLSACLMLKFLEGGKQIHCYVLRSGIVMDVSMVNGFIDFYFKCHKVQLGRKLFDRM 303

Query: 379 DNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNAC 429
            +K N + W T+I+   Q+ +   A+ LF +M R    PD      +LN+C
Sbjct: 304 VDK-NVVSWTTVIAGCMQNSFHRDALDLFVEMARMGWNPDAFGCTSVLNSC 353



 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 116/478 (24%), Positives = 211/478 (44%), Gaps = 68/478 (14%)

Query: 54  TLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDK 113
            L+ +L  C   K L+ GK++H ++ L         + N  I  YFKC       KV   
Sbjct: 244 VLSSVLSACLMLKFLEGGKQIHCYV-LRSGIVMDVSMVNGFIDFYFKC------HKV--- 293

Query: 114 IPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFY 173
                             LG     R LFD M +++VVSW T+I G  ++    + L  +
Sbjct: 294 -----------------QLG-----RKLFDRMVDKNVVSWTTVIAGCMQNSFHRDALDLF 331

Query: 174 KVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKC 233
             + R   + + F    +L  C  L  L+  RQVH   +     ++  + + ++D YAKC
Sbjct: 332 VEMARMGWNPDAFGCTSVLNSCGSLVALEKGRQVHAYAIKVNIDNDDFVKNGLIDMYAKC 391

Query: 234 GELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYT 293
             L+DAR++F+   A D++++  M+ GY++   +                          
Sbjct: 392 DSLTDARKVFNLMAAIDLVSYNAMIEGYSRQDKL-------------------------- 425

Query: 294 RNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTI 353
                 +AL+LF  M +    P    F S L   AS+  L+   Q+HG +I+     +  
Sbjct: 426 -----CEALDLFREMRLSLSSPTLLIFVSLLGVSASLYHLELSNQIHGLIIKYGVSLDEF 480

Query: 354 VMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRS 413
             S+LID+YSKC  + D R VF+   +K+  ++W  M S  TQ   +E++++L+  +  S
Sbjct: 481 AGSALIDVYSKCSRVGDARLVFEEIQDKD-IVVWTAMFSGYTQQSENEESLKLYKCLQMS 539

Query: 414 SVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQ 473
            +KP++ T A ++ A ++   ++ G   F +    +G   +      L+++ A++G  ++
Sbjct: 540 RLKPNEFTFAAVITAASNIASLRHG-QQFHNQVIKMGFDDDPFVANTLVDMYAKSGSIEE 598

Query: 474 LMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQ--NPQSSATHGLLSS 529
                    ++ D+  WN++      HG  +   +V + +I +   P      G+LS+
Sbjct: 599 AHKAFISTNWK-DTACWNSMIATYAQHGEAEKALQVFEDMIMEGLKPNYVTFVGVLSA 655



 Score =  135 bits (339), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 95/372 (25%), Positives = 168/372 (45%), Gaps = 64/372 (17%)

Query: 55  LAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKI 114
           LA +++ C +   L    ++H  L +        ++   LI  Y K     DAR +FD +
Sbjct: 144 LASVVRACTQFGGLNPALQIH-GLVVKGGYVQDVYVCTSLIDFYTKHACIDDARLLFDGL 202

Query: 115 PVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYK 174
            VK  F++  +++GY+  G  + +  LFD M E  V                        
Sbjct: 203 QVKTSFTWTTIIAGYSKQGRSQVSLKLFDQMKEGHVCP---------------------- 240

Query: 175 VLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCG 234
                    +++  + +L+ C+ L+ L+  +Q+H  VL +G + +V + +  +D Y KC 
Sbjct: 241 ---------DKYVLSSVLSACLMLKFLEGGKQIHCYVLRSGIVMDVSMVNGFIDFYFKCH 291

Query: 235 ELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTR 294
           ++   R+LFD    ++V++WT                               T+IAG  +
Sbjct: 292 KVQLGRKLFDRMVDKNVVSWT-------------------------------TVIAGCMQ 320

Query: 295 NGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIV 354
           N   + AL+LF  M  +   P+    +S L +C S+V+L+ G+QVH + I+ N  ++  V
Sbjct: 321 NSFHRDALDLFVEMARMGWNPDAFGCTSVLNSCGSLVALEKGRQVHAYAIKVNIDNDDFV 380

Query: 355 MSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSS 414
            + LIDMY+KC  L D R+VF+L     + + +N MI   ++     +A+ LF +M  S 
Sbjct: 381 KNGLIDMYAKCDSLTDARKVFNLM-AAIDLVSYNAMIEGYSRQDKLCEALDLFREMRLSL 439

Query: 415 VKPDKITLAVIL 426
             P  +    +L
Sbjct: 440 SSPTLLIFVSLL 451



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 52/214 (24%), Positives = 101/214 (47%), Gaps = 11/214 (5%)

Query: 337 KQVHGFLIRTNFRSNTI-VMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALT 395
           K++H  ++   F  + I ++++L+  YSK   +N   ++FD   +K N + W++M+S  T
Sbjct: 58  KKIHSKIVVFGFHKHDIFLVNTLLHAYSKLNLVNHANKLFDTMSHK-NLVTWSSMVSMYT 116

Query: 396 QHGYDEQAIRLFHDMVRS-SVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPN 454
            H +  +A+ LF   +RS + KP++  LA ++ ACT  G +   L     +    G +  
Sbjct: 117 HHSHCLEALMLFVQFMRSCNEKPNEYILASVVRACTQFGGLNPALQ-IHGLVVKGGYV-- 173

Query: 455 QEHHAC--LIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQ 512
           Q+ + C  LI+   +  C D      + +  +  S+ W  +       G   +  K+ DQ
Sbjct: 174 QDVYVCTSLIDFYTKHACIDDARLLFDGLQVK-TSFTWTTIIAGYSKQGRSQVSLKLFDQ 232

Query: 513 LIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQL 546
           +  +         +LSS+ SA    + +E  +Q+
Sbjct: 233 M--KEGHVCPDKYVLSSVLSACLMLKFLEGGKQI 264


>gi|15239979|ref|NP_201453.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171133|sp|Q9FJY7.1|PP449_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g66520
 gi|10177533|dbj|BAB10928.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332010841|gb|AED98224.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 620

 Score =  289 bits (739), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 145/445 (32%), Positives = 245/445 (55%), Gaps = 1/445 (0%)

Query: 134 MMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILT 193
            + +A+ +FD     D   WN MI G++ S   E  L  Y+ +   S   N ++F  +L 
Sbjct: 64  FLPYAQIVFDGFDRPDTFLWNLMIRGFSCSDEPERSLLLYQRMLCSSAPHNAYTFPSLLK 123

Query: 194 ICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLT 253
            C  L   + T Q+H Q+   G+ ++V   +S++++YA  G    A  LFD     D ++
Sbjct: 124 ACSNLSAFEETTQIHAQITKLGYENDVYAVNSLINSYAVTGNFKLAHLLFDRIPEPDDVS 183

Query: 254 WTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRI 313
           W +++ GY K G M+ A  LF +M EKN +SWTT+I+GY +  + ++AL+LF  M    +
Sbjct: 184 WNSVIKGYVKAGKMDIALTLFRKMAEKNAISWTTMISGYVQADMNKEALQLFHEMQNSDV 243

Query: 314 RPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQ 373
            P+  + ++ L ACA + +L+ GK +H +L +T  R ++++   LIDMY+KCG + +  +
Sbjct: 244 EPDNVSLANALSACAQLGALEQGKWIHSYLNKTRIRMDSVLGCVLIDMYAKCGEMEEALE 303

Query: 374 VFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSG 433
           VF     K++   W  +IS    HG+  +AI  F +M +  +KP+ IT   +L AC+++G
Sbjct: 304 VFK-NIKKKSVQAWTALISGYAYHGHGREAISKFMEMQKMGIKPNVITFTAVLTACSYTG 362

Query: 434 LVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNAL 493
           LV+EG   F SM  D  + P  EH+ C+++LL +AG  D+    +++MP + ++ +W AL
Sbjct: 363 LVEEGKLIFYSMERDYNLKPTIEHYGCIVDLLGRAGLLDEAKRFIQEMPLKPNAVIWGAL 422

Query: 494 HGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFK 553
              CRIH NI++G ++ + LI  +P     +   ++I++   K     + R+L+ E+   
Sbjct: 423 LKACRIHKNIELGEEIGEILIAIDPYHGGRYVHKANIHAMDKKWDKAAETRRLMKEQGVA 482

Query: 554 KEQAISWIEIENKVHAFSVSDSLHP 578
           K    S I +E   H F   D  HP
Sbjct: 483 KVPGCSTISLEGTTHEFLAGDRSHP 507



 Score =  139 bits (350), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 86/347 (24%), Positives = 160/347 (46%), Gaps = 33/347 (9%)

Query: 52  AETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVF 111
           A T   +L+ C+   + +   ++H  +     +    +  N LI+ Y   G+   A  +F
Sbjct: 115 AYTFPSLLKACSNLSAFEETTQIHAQITKLGYEN-DVYAVNSLINSYAVTGNFKLAHLLF 173

Query: 112 DKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLK 171
           D+IP  +  S+N+++ GY   G M  A  LF  MAE++ +SW TMI GY ++   +E L+
Sbjct: 174 DRIPEPDDVSWNSVIKGYVKAGKMDIALTLFRKMAEKNAISWTTMISGYVQADMNKEALQ 233

Query: 172 FYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYA 231
            +  ++   +  +  S A  L+ C +L  L+  + +H  +  T    + V+   ++D YA
Sbjct: 234 LFHEMQNSDVEPDNVSLANALSACAQLGALEQGKWIHSYLNKTRIRMDSVLGCVLIDMYA 293

Query: 232 KCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAG 291
           KCGE+ +A  +F     + V  WT ++SGYA                             
Sbjct: 294 KCGEMEEALEVFKNIKKKSVQAWTALISGYA----------------------------- 324

Query: 292 YTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRT-NFRS 350
              +G G++A+  F  M  + I+PN  TF++ L AC+    ++ GK +   + R  N + 
Sbjct: 325 --YHGHGREAISKFMEMQKMGIKPNVITFTAVLTACSYTGLVEEGKLIFYSMERDYNLKP 382

Query: 351 NTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQH 397
                  ++D+  + G L++ ++       K N+++W  ++ A   H
Sbjct: 383 TIEHYGCIVDLLGRAGLLDEAKRFIQEMPLKPNAVIWGALLKACRIH 429


>gi|326509211|dbj|BAJ91522.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 878

 Score =  288 bits (738), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 172/579 (29%), Positives = 282/579 (48%), Gaps = 48/579 (8%)

Query: 27  LISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTP 86
           L+  G+ +EA+  L  +   G+R    T A  L  C+  + L LG+ +H  +        
Sbjct: 257 LVQGGRCAEAVEVLYDMVSLGVRPDGVTFASALPACSRLEMLALGREMHAVVLKDADLAA 316

Query: 87  TTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMA 146
            +F+++ L+ MY        AR+VFD +P  +             LGM            
Sbjct: 317 NSFVASALVDMYAGNEKVASARRVFDMVPEPSR-----------QLGM------------ 353

Query: 147 ERDVVSWNTMIIGYAKSGAVEEGLK-FYKVLRRFSISCNEFSFAGILTICVKLEELKLTR 205
                 WN MI GYA++G  EE L+ F ++      + +E + +G+L  C + E      
Sbjct: 354 ------WNAMICGYAQAGMDEEALELFSRMEAEAGCAPSETTMSGVLPACARSEGFAGKE 407

Query: 206 QVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLG 265
            +HG V+  G   N  + ++++D YA+ GE+  ARR+F   D RDV++W T+++G    G
Sbjct: 408 AMHGYVVKRGMAGNRFVQNALMDMYARLGEMDVARRIFAMIDPRDVVSWNTLITGCVVQG 467

Query: 266 DMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLC 325
               A +L  EM      S +   +  T  G   + +            PN  T  + L 
Sbjct: 468 HAAEAFQLVTEM---QLPSPSPSSSSTTEEGEAHRCM------------PNNITLMTLLP 512

Query: 326 ACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSM 385
            CA++ +   GK++HG+ +R    S+  V S+L+DMY+KCGCL   R VFD    + N +
Sbjct: 513 GCAALAAPARGKEIHGYAVRHALESDIAVGSALVDMYAKCGCLAASRAVFDRLPRR-NVI 571

Query: 386 LWNTMISALTQHGYDEQAIRLFHDMVRSS-VKPDKITLAVILNACTHSGLVQEGLTYFES 444
            WN +I A   HG  ++A+ LF +M       P+++T    L AC+HSGLV  GL  F  
Sbjct: 572 TWNVLIMAYGMHGLGDEAVALFDEMAAGGEATPNEVTFIAALAACSHSGLVDRGLELFHG 631

Query: 445 MTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKM-PYEHDSYLWNALHGVCRIHGNI 503
           M  D G+ P  + HAC++++L +AG  D+  + +  M P E     W++L G CR+H N+
Sbjct: 632 MERDHGVKPTPDLHACVVDVLGRAGRLDEAYSIITSMEPGEQQVSAWSSLLGACRLHRNV 691

Query: 504 DMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEI 563
           ++G    ++L +  P  ++ + LL +IYSA G       VR  +  +   KE   SWIE+
Sbjct: 692 ELGEVAAERLFELEPGEASHYVLLCNIYSAAGMWDKSVAVRVRMRRQGVAKEPGCSWIEL 751

Query: 564 ENKVHAFSVSDSLHPMRDVLYSVLEQLAGQMGEDAPSLD 602
           +  +H F   +S HP    +++ ++ L  +M  +  + D
Sbjct: 752 DGAIHRFMAGESSHPASAEVHAHMDALWERMRREGYAPD 790



 Score =  142 bits (358), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 109/428 (25%), Positives = 190/428 (44%), Gaps = 70/428 (16%)

Query: 117 KNLFSYNNMLSGYANLGMMKHARNLFDNMAER------DVVSWNTMIIGYAKSGAVEEGL 170
           +  F +N +LS YA LG++  A++LF   A        DVV+WNTMI    + G   E +
Sbjct: 208 RERFPFNALLSMYARLGLVDDAQSLFRTTAAAFSPGGGDVVTWNTMISLLVQGGRCAEAV 267

Query: 171 KFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFL-SNVVISSSIVDA 229
           +    +    +  +  +FA  L  C +LE L L R++H  VL    L +N  ++S++VD 
Sbjct: 268 EVLYDMVSLGVRPDGVTFASALPACSRLEMLALGREMHAVVLKDADLAANSFVASALVDM 327

Query: 230 YAKCGELSDARRLFD--ETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTT 287
           YA   +++ ARR+FD     +R +  W  M+ GYA+                        
Sbjct: 328 YAGNEKVASARRVFDMVPEPSRQLGMWNAMICGYAQ------------------------ 363

Query: 288 LIAGYTRNGLGQKALELFTRMMI-LRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRT 346
                   G+ ++ALELF+RM       P++ T S  L ACA        + +HG++++ 
Sbjct: 364 -------AGMDEEALELFSRMEAEAGCAPSETTMSGVLPACARSEGFAGKEAMHGYVVKR 416

Query: 347 NFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRL 406
               N  V ++L+DMY++ G ++  R++F + D + + + WNT+I+     G+  +A +L
Sbjct: 417 GMAGNRFVQNALMDMYARLGEMDVARRIFAMIDPR-DVVSWNTLITGCVVQGHAAEAFQL 475

Query: 407 FHDMVRSSVK----------------PDKITLAVILNACT-----HSGLVQEGLTYFESM 445
             +M   S                  P+ ITL  +L  C        G    G     ++
Sbjct: 476 VTEMQLPSPSPSSSSTTEEGEAHRCMPNNITLMTLLPGCAALAAPARGKEIHGYAVRHAL 535

Query: 446 THDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDM 505
             D+ +       + L+++ A+ GC        +++P   +   WN L     +HG  D 
Sbjct: 536 ESDIAV------GSALVDMYAKCGCLAASRAVFDRLP-RRNVITWNVLIMAYGMHGLGDE 588

Query: 506 GRKVVDQL 513
              + D++
Sbjct: 589 AVALFDEM 596



 Score = 69.7 bits (169), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 51/200 (25%), Positives = 96/200 (48%), Gaps = 14/200 (7%)

Query: 280 KNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFS--SCLCACASIVS---LK 334
           ++ VS+ +LI+        ++AL+   R M+   R +  +F+  S L AC+ +      +
Sbjct: 131 RDAVSYNSLISALCLFRQWERALDAL-RDMLAEGRHDVSSFTLVSVLLACSHLPGDDGRR 189

Query: 335 HGKQVHGFLIRTNFRSNT---IVMSSLIDMYSKCGCLNDGRQVFDLT-----DNKENSML 386
            G++ H F ++  F          ++L+ MY++ G ++D + +F  T         + + 
Sbjct: 190 LGREAHAFALKRGFLDEGRERFPFNALLSMYARLGLVDDAQSLFRTTAAAFSPGGGDVVT 249

Query: 387 WNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMT 446
           WNTMIS L Q G   +A+ + +DMV   V+PD +T A  L AC+   ++  G      + 
Sbjct: 250 WNTMISLLVQGGRCAEAVEVLYDMVSLGVRPDGVTFASALPACSRLEMLALGREMHAVVL 309

Query: 447 HDLGIIPNQEHHACLIELLA 466
            D  +  N    + L+++ A
Sbjct: 310 KDADLAANSFVASALVDMYA 329


>gi|147801171|emb|CAN62238.1| hypothetical protein VITISV_014689 [Vitis vinifera]
          Length = 957

 Score =  288 bits (738), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 160/476 (33%), Positives = 261/476 (54%), Gaps = 33/476 (6%)

Query: 123 NNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSIS 182
           N+++  YA    MK+   +FD M ++DVVSW T+I G+A++G+    L+ ++ ++   I 
Sbjct: 422 NSLVDMYAKFCSMKYMDCIFDKMPDKDVVSWTTIIAGHAQNGSHSRALELFREVQLEGID 481

Query: 183 CNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRL 242
            +    + IL  C  L+ +   +++H  ++  G LS++V+ + IVD Y +CG        
Sbjct: 482 LDVMMISSILLACSGLKLISSVKEIHSYIIRKG-LSDLVLQNGIVDVYGECG-------- 532

Query: 243 FDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKAL 302
                                  +++ A+++F  +  K+ VSWT++I+ Y  NGL  +AL
Sbjct: 533 -----------------------NVDYAARMFELIEFKDVVSWTSMISCYVHNGLANEAL 569

Query: 303 ELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMY 362
           ELF  M    + P+  +  S L A AS+ +LK GK++HGFLIR  F     + S+L+DMY
Sbjct: 570 ELFHLMKETGVEPDSISLVSILSAAASLSALKKGKEIHGFLIRKGFVLEGSLASTLVDMY 629

Query: 363 SKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITL 422
           ++CG L   R VF+   NK+  +LW +MI+A   HG    AI LF  M   S+ PD I  
Sbjct: 630 ARCGTLEKSRNVFNFIRNKD-LVLWTSMINAYGMHGCGRAAIDLFRRMEDESIAPDHIAF 688

Query: 423 AVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMP 482
             +L AC+HSGL+ EG  + ESM ++  + P  EH+ACL++LL +A   ++    ++ M 
Sbjct: 689 VAVLYACSHSGLMNEGRRFLESMKYEYQLEPWPEHYACLVDLLGRANHLEEAYQFVKGME 748

Query: 483 YEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEK 542
            E  + +W AL G C+IH N ++G     +L++ +P++   + L+S++YSA  + + VE 
Sbjct: 749 VEPTAEVWCALLGACQIHSNKELGEIAAQKLLEMDPENPGNYVLVSNVYSAERRWKDVEX 808

Query: 543 VRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQMGEDA 598
           VR  +     KK    SWIE+ NKVH F   D  HP    +YS L Q+  ++ ++ 
Sbjct: 809 VRMRMKASGLKKNPGCSWIEVGNKVHTFMARDKSHPQSYEIYSKLSQITEKLAKEG 864



 Score =  184 bits (467), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 143/536 (26%), Positives = 250/536 (46%), Gaps = 87/536 (16%)

Query: 23  SFLSLISKGQLSEAISSL-DLLAQRGIRLPA-----ETLAFILQQCAESKSLKLGKRVHL 76
           S   +  +G ++EA  SL DL A +    P+     E  + +L+ C   K+L  G++VH 
Sbjct: 46  SLREICKRGSVNEAFQSLTDLFANQS---PSQFSLDEAYSSVLELCGSKKALSEGQQVHA 102

Query: 77  HLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMK 136
           H+  +     + FLS  L+ MY KCG  VDA K                           
Sbjct: 103 HMITSNALFNSVFLSTRLVFMYGKCGCLVDAEK--------------------------- 135

Query: 137 HARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICV 196
               LFD M  + + +WN MI  Y  +G     L+ Y+ +R   I  +  +F  IL  C 
Sbjct: 136 ----LFDGMPHKTIFTWNAMIGAYVTNGEPLGSLELYREMRVSGIPLDACTFPCILKACG 191

Query: 197 KLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDE-TDARDVLTWT 255
            L++ +   +VHG  +  G++S V +++SIV  Y KC +L+ AR+LFD   +  DV++W 
Sbjct: 192 LLKDRRYGAEVHGLAIKEGYVSIVFVANSIVGMYTKCNDLNGARQLFDRMPEKEDVVSWN 251

Query: 256 TMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRP 315
           +M+S Y+  G    A +LF EM                     QKA           + P
Sbjct: 252 SMISAYSSNGQSIEALRLFGEM---------------------QKA----------SLAP 280

Query: 316 NQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVF 375
           N +TF + L AC     +K G  +H  ++++++  N  V ++LI MY++ G + +   +F
Sbjct: 281 NTYTFVAALQACEDSSFIKQGMFIHATVLKSSYYINVFVANALIAMYARFGKMGEAANIF 340

Query: 376 DLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLV 435
              D+ + ++ WN+M+S   Q+G   +A++ +H+M  +  KPD + +  I+ A   SG  
Sbjct: 341 YNMDDWD-TISWNSMLSGFVQNGLYHEALQFYHEMRDAGQKPDLVAVISIIAASARSGNT 399

Query: 436 QEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQL-EKMPYEHDSYLWNAL- 493
             G+    +     G+  + +    L+++ A+  CS + M+ + +KMP + D   W  + 
Sbjct: 400 LHGMQ-IHAYAMKNGLDSDLQVGNSLVDMYAKF-CSMKYMDCIFDKMP-DKDVVSWTTII 456

Query: 494 --HGVCRIHGN-IDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQL 546
             H     H   +++ R+V  + ID +        ++SSI  A    +L+  V+++
Sbjct: 457 AGHAQNGSHSRALELFREVQLEGIDLDVM------MISSILLACSGLKLISSVKEI 506



 Score =  148 bits (374), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 108/421 (25%), Positives = 193/421 (45%), Gaps = 79/421 (18%)

Query: 35  EAISSLDLLAQ---RGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLS 91
           E + SL+L  +    GI L A T   IL+ C   K  + G  VH  L + +      F++
Sbjct: 160 EPLGSLELYREMRVSGIPLDACTFPCILKACGLLKDRRYGAEVH-GLAIKEGYVSIVFVA 218

Query: 92  NHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAER-DV 150
           N ++ MY KC                      N L+G         AR LFD M E+ DV
Sbjct: 219 NSIVGMYTKC----------------------NDLNG---------ARQLFDRMPEKEDV 247

Query: 151 VSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQ 210
           VSWN+MI  Y+ +G   E L+ +  +++ S++ N ++F   L  C     +K    +H  
Sbjct: 248 VSWNSMISAYSSNGQSIEALRLFGEMQKASLAPNTYTFVAALQACEDSSFIKQGMFIHAT 307

Query: 211 VLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESA 270
           VL + +  NV ++++                               +++ YA+ G M  A
Sbjct: 308 VLKSSYYINVFVANA-------------------------------LIAMYARFGKMGEA 336

Query: 271 SKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASI 330
           + +F  M + + +SW ++++G+ +NGL  +AL+ +  M     +P+     S + A A  
Sbjct: 337 ANIFYNMDDWDTISWNSMLSGFVQNGLYHEALQFYHEMRDAGQKPDLVAVISIIAASARS 396

Query: 331 VSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTM 390
            +  HG Q+H + ++    S+  V +SL+DMY+K   +     +FD   +K+  + W T+
Sbjct: 397 GNTLHGMQIHAYAMKNGLDSDLQVGNSLVDMYAKFCSMKYMDCIFDKMPDKD-VVSWTTI 455

Query: 391 ISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACT-----------HSGLVQEGL 439
           I+   Q+G   +A+ LF ++    +  D + ++ IL AC+           HS ++++GL
Sbjct: 456 IAGHAQNGSHSRALELFREVQLEGIDLDVMMISSILLACSGLKLISSVKEIHSYIIRKGL 515

Query: 440 T 440
           +
Sbjct: 516 S 516



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 44/165 (26%), Positives = 84/165 (50%), Gaps = 9/165 (5%)

Query: 21  IQSFLSLIS----KGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHL 76
           + S+ S+IS     G  +EA+    L+ + G+   + +L  IL   A   +LK GK +H 
Sbjct: 549 VVSWTSMISCYVHNGLANEALELFHLMKETGVEPDSISLVSILSAAASLSALKKGKEIHG 608

Query: 77  HLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMK 136
            L + +       L++ L+ MY +CG+   +R VF+ I  K+L  + +M++ Y   G  +
Sbjct: 609 FL-IRKGFVLEGSLASTLVDMYARCGTLEKSRNVFNFIRNKDLVLWTSMINAYGMHGCGR 667

Query: 137 HARNLFDNMAER----DVVSWNTMIIGYAKSGAVEEGLKFYKVLR 177
            A +LF  M +     D +++  ++   + SG + EG +F + ++
Sbjct: 668 AAIDLFRRMEDESIAPDHIAFVAVLYACSHSGLMNEGRRFLESMK 712


>gi|242079743|ref|XP_002444640.1| hypothetical protein SORBIDRAFT_07g025280 [Sorghum bicolor]
 gi|241940990|gb|EES14135.1| hypothetical protein SORBIDRAFT_07g025280 [Sorghum bicolor]
          Length = 690

 Score =  288 bits (738), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 162/525 (30%), Positives = 267/525 (50%), Gaps = 47/525 (8%)

Query: 74  VHLHLKLTQRKTPTTFLSNHLISMYFKCG-SDVDA--RKVFDKIPVKNLFSYNNMLSGYA 130
           V + + L QR T   F  + LI      G + V A    VF    V++ F  N ++  Y+
Sbjct: 194 VFVDMPLRQRDT---FTYSFLIKALATAGVTPVRAAHTHVFKLGSVEDTFVGNALIDAYS 250

Query: 131 NLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLK-FYKVLRRFSISCNEFSFA 189
               +  A+ +FD M  RDVVSWNT +    + G V+     F ++  + ++S N     
Sbjct: 251 KNDGLSDAKKVFDEMTTRDVVSWNTAMAAMVRKGEVDAARSMFDEMPEKDTVSWN----- 305

Query: 190 GILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDAR 249
                                              +++D YAK GE  +A  LF     R
Sbjct: 306 -----------------------------------TMLDGYAKAGEAEEAFELFQRMPGR 330

Query: 250 DVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMM 309
           +V++W+T+VS Y K GDME A  +F++MP KN V+WT +++   + GL  +A  LFT M 
Sbjct: 331 NVVSWSTVVSAYCKKGDMEMARVIFDKMPAKNLVTWTIMVSACAQKGLVGEAGRLFTEMK 390

Query: 310 ILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLN 369
              I  +     S L ACA    L  GK++H  + +     +T+V ++L+DM+ KCGC+N
Sbjct: 391 EAAIELDVVAVVSILAACAESGCLALGKRIHRHVRQRKLGRSTLVCNALMDMFCKCGCVN 450

Query: 370 DGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNAC 429
               +FD    +++S+ WN +I     HG+ E+A+ LF  M +    PD +TL  +L+AC
Sbjct: 451 RADYIFDTEIVEKDSVSWNIIIGGFAMHGHGEKALNLFTQMKQQGFHPDAVTLINVLSAC 510

Query: 430 THSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYL 489
           TH GLV+EG  +F +M  D GI P  EH+ C+++LL + G   + ++ ++ MP+E +  +
Sbjct: 511 THMGLVEEGRRFFANMETDYGIKPEIEHYGCMVDLLGRGGLIKEAVDMIKSMPWEPNEVI 570

Query: 490 WNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINE 549
           W +L   CR+H N++      ++L +  P ++  + +LS+IY+  GK   + K R  +  
Sbjct: 571 WGSLLSACRLHKNVEYAELAANELSNLQPSNAGNYAVLSNIYAEAGKWSDMAKARVQMKG 630

Query: 550 RQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQM 594
              +K    SWIE++   H F+V D  HP  D +  ++++L+  +
Sbjct: 631 TGSQKTAGSSWIELDEAFHEFTVGDRKHPESDQISDMIDRLSSHV 675



 Score = 72.8 bits (177), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 52/150 (34%), Positives = 78/150 (52%), Gaps = 8/150 (5%)

Query: 30  KGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTP-TT 88
           KG + EA      + +  I L    +  IL  CAES  L LGKR+H H++  QRK   +T
Sbjct: 376 KGLVGEAGRLFTEMKEAAIELDVVAVVSILAACAESGCLALGKRIHRHVR--QRKLGRST 433

Query: 89  FLSNHLISMYFKCGSDVDARKVFD-KIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAE 147
            + N L+ M+ KCG    A  +FD +I  K+  S+N ++ G+A  G  + A NLF  M +
Sbjct: 434 LVCNALMDMFCKCGCVNRADYIFDTEIVEKDSVSWNIIIGGFAMHGHGEKALNLFTQMKQ 493

Query: 148 R----DVVSWNTMIIGYAKSGAVEEGLKFY 173
           +    D V+   ++      G VEEG +F+
Sbjct: 494 QGFHPDAVTLINVLSACTHMGLVEEGRRFF 523



 Score = 58.9 bits (141), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 58/248 (23%), Positives = 105/248 (42%), Gaps = 34/248 (13%)

Query: 198 LEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTM 257
           L  L+  +++H QVL  G   +   +S ++ +YA    +   R +F    A      T +
Sbjct: 114 LPRLRHVQELHAQVLRQGLHRDPRAASKLIASYALLRRVPACRCVFSAAAAPPFAPSTAL 173

Query: 258 VSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQ 317
           ++                           TL+  Y  N L   AL +F   M LR R + 
Sbjct: 174 LA--------------------------NTLLRAYALNSLPHAALAVFVD-MPLRQR-DT 205

Query: 318 HTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDL 377
            T+S  + A A+   +   +  H  + +     +T V ++LID YSK   L+D ++VFD 
Sbjct: 206 FTYSFLIKALAT-AGVTPVRAAHTHVFKLGSVEDTFVGNALIDAYSKNDGLSDAKKVFDE 264

Query: 378 TDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQE 437
              + + + WNT ++A+ + G  + A  +F +M       D ++   +L+    +G  +E
Sbjct: 265 MTTR-DVVSWNTAMAAMVRKGEVDAARSMFDEMPEK----DTVSWNTMLDGYAKAGEAEE 319

Query: 438 GLTYFESM 445
               F+ M
Sbjct: 320 AFELFQRM 327


>gi|297740529|emb|CBI30711.3| unnamed protein product [Vitis vinifera]
          Length = 697

 Score =  288 bits (738), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 174/592 (29%), Positives = 280/592 (47%), Gaps = 128/592 (21%)

Query: 50  LPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARK 109
           L   T   +LQ CA+ KS++ G+R+H  ++    +     L + L+ MY  CG       
Sbjct: 99  LELRTYCSVLQLCADLKSIQDGRRIHSIIQSNDVEVDGV-LGSKLVFMYVTCGD------ 151

Query: 110 VFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEG 169
                                    ++  R +FD +A   V  WN ++ GYAK G   E 
Sbjct: 152 -------------------------LREGRRIFDKVANEKVFLWNLLMNGYAKIGNFRES 186

Query: 170 LKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDA 229
           L  +K +R                      EL + R                        
Sbjct: 187 LSLFKRMR----------------------ELGIRR------------------------ 200

Query: 230 YAKCGELSDARRLFDETDARDVLTWTTMVSGY---------------------------- 261
                 +  AR+LFDE   RDV++W +M+SGY                            
Sbjct: 201 ------VESARKLFDELGDRDVISWNSMISGYVSNGLSEKGLDLFEQMLLLGINTDLATM 254

Query: 262 ---------------AKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFT 306
                          +K G++ SA ++F  M E++ VSWT++IAGY R GL   ++ LF 
Sbjct: 255 VSVELTLNNCLLDMYSKSGNLNSAIQVFETMGERSVVSWTSMIAGYAREGLSDMSVRLFH 314

Query: 307 RMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCG 366
            M    + PN  T +  L ACAS+ +L+ G+++HG ++R  F  +  V ++L+DMY KCG
Sbjct: 315 EMEKEDLFPNSITMACILPACASLAALERGQEIHGHILRNGFSLDRHVANALVDMYLKCG 374

Query: 367 CLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVIL 426
            L   R +FD+   K+  + W  MI+    HGY  +AI  F++M  S ++PD+++   IL
Sbjct: 375 ALGLARLLFDMIPEKD-LVSWTVMIAGYGMHGYGSEAIAAFNEMRNSGIEPDEVSFISIL 433

Query: 427 NACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHD 486
            AC+HSGL+ EG  +F  M ++  I P  EH+AC+++LLA+AG   +    ++ MP E D
Sbjct: 434 YACSHSGLLDEGWGFFNMMRNNCCIEPKSEHYACIVDLLARAGNLSKAYKFIKMMPIEPD 493

Query: 487 SYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQL 546
           + +W AL   CRI+ ++ +  KV + + +  P+++  + LL++IY+   K   V+K+R+ 
Sbjct: 494 ATIWGALLCGCRIYHDVKLAEKVAEHVFELEPENTGYYVLLANIYAEAEKWEEVKKLRER 553

Query: 547 INERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQMGEDA 598
           I  R  +K    SWIEI+ KVH F   DS HP+ + +  +L++   +M E+ 
Sbjct: 554 IGRRGLRKNPGCSWIEIKGKVHIFVTGDSSHPLANKIELLLKKTRTRMKEEG 605


>gi|334187761|ref|NP_197403.2| mitochondrial editing factor 18 [Arabidopsis thaliana]
 gi|223635651|sp|P0C8Q8.1|PP394_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g19020, mitochondrial; Flags: Precursor
 gi|332005257|gb|AED92640.1| mitochondrial editing factor 18 [Arabidopsis thaliana]
          Length = 685

 Score =  288 bits (738), Expect = 5e-75,   Method: Compositional matrix adjust.
 Identities = 164/534 (30%), Positives = 290/534 (54%), Gaps = 10/534 (1%)

Query: 32  QLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSL---KLGKRVHLHLKLTQRKTPTT 88
           Q SEA+     +   GI L   TLA ++  C+    +   ++ + + + LKL  R     
Sbjct: 153 QWSEAMELFREMRNLGIMLNEVTLATVISACSHLGGIWDCRMLQSLAIKLKLEGR----V 208

Query: 89  FLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAER 148
           F+S +L+ MY  C    DARK+FD++P +NL ++N ML+GY+  G+++ A  LFD + E+
Sbjct: 209 FVSTNLLHMYCLCLCLKDARKLFDEMPERNLVTWNVMLNGYSKAGLIEQAEELFDQITEK 268

Query: 149 DVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVH 208
           D+VSW TMI G  +   ++E L +Y  + R  +  +E     +L+   +        Q+H
Sbjct: 269 DIVSWGTMIDGCLRKNQLDEALVYYTEMLRCGMKPSEVMMVDLLSASARSVGSSKGLQLH 328

Query: 209 GQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDME 268
           G ++  GF     + ++I+  YA   ++  A + F+ +    + +   +++G+ K G +E
Sbjct: 329 GTIVKRGFDCYDFLQATIIHFYAVSNDIKLALQQFEASVKDHIASRNALIAGFVKNGMVE 388

Query: 269 SASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMIL-RIRPNQHTFSSCLCAC 327
            A ++F++  +K+  SW  +I+GY ++   Q AL LF  M+   +++P+  T  S   A 
Sbjct: 389 QAREVFDQTHDKDIFSWNAMISGYAQSLSPQLALHLFREMISSSQVKPDAITMVSVFSAI 448

Query: 328 ASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSML- 386
           +S+ SL+ GK+ H +L  +    N  + +++IDMY+KCG +     +F  T N  +S + 
Sbjct: 449 SSLGSLEEGKRAHDYLNFSTIPPNDNLTAAIIDMYAKCGSIETALNIFHQTKNISSSTIS 508

Query: 387 -WNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESM 445
            WN +I     HG+ + A+ L+ D+    +KP+ IT   +L+AC H+GLV+ G TYFESM
Sbjct: 509 PWNAIICGSATHGHAKLALDLYSDLQSLPIKPNSITFVGVLSACCHAGLVELGKTYFESM 568

Query: 446 THDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDM 505
             D GI P+ +H+ C+++LL +AG  ++    ++KMP + D  +W  L    R HGN+++
Sbjct: 569 KSDHGIEPDIKHYGCMVDLLGKAGRLEEAKEMIKKMPVKADVMIWGMLLSASRTHGNVEI 628

Query: 506 GRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAIS 559
                 +L   +P       +LS++Y+  G+   V  VR+ +  R  +  +A S
Sbjct: 629 AELAATELAAIDPSHGGCKVMLSNVYADAGRWEDVALVREEMRTRDVEWSRAFS 682



 Score =  207 bits (527), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 144/512 (28%), Positives = 240/512 (46%), Gaps = 39/512 (7%)

Query: 54  TLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDK 113
            L   L  CA S  +  G+++H  + L        ++ N +++MY KC    DA  VF  
Sbjct: 43  ALVSALGSCASSNDVTCGRQIHCRV-LKSGLDSNGYICNSVLNMYAKCRLLADAESVFRD 101

Query: 114 IPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFY 173
               +  S+N M+ GY     +  A  LFD M ER  VS+ T+I GYA++    E ++ +
Sbjct: 102 HAKLDSASFNIMVDGYVRSRRLWDALKLFDVMPERSCVSYTTLIKGYAQNNQWSEAMELF 161

Query: 174 KVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKC 233
           + +R   I  NE + A +++ C  L  +   R +    +       V +S++++  Y  C
Sbjct: 162 REMRNLGIMLNEVTLATVISACSHLGGIWDCRMLQSLAIKLKLEGRVFVSTNLLHMYCLC 221

Query: 234 GELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYT 293
             L DAR+LFDE   R+++TW  M++GY+K G +E A +LF+++ EK+ VSW T+I G  
Sbjct: 222 LCLKDARKLFDEMPERNLVTWNVMLNGYSKAGLIEQAEELFDQITEKDIVSWGTMIDGCL 281

Query: 294 RNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTI 353
           R     +AL  +T M+   ++P++      L A A  V    G Q+HG +++  F     
Sbjct: 282 RKNQLDEALVYYTEMLRCGMKPSEVMMVDLLSASARSVGSSKGLQLHGTIVKRGFDCYDF 341

Query: 354 VMSSLIDMYS-------------------------------KCGCLNDGRQVFDLTDNKE 382
           + +++I  Y+                               K G +   R+VFD T +K+
Sbjct: 342 LQATIIHFYAVSNDIKLALQQFEASVKDHIASRNALIAGFVKNGMVEQAREVFDQTHDKD 401

Query: 383 NSMLWNTMISALTQHGYDEQAIRLFHDMVRSS-VKPDKITLAVILNACTHSGLVQEGLTY 441
               WN MIS   Q    + A+ LF +M+ SS VKPD IT+  + +A +  G ++EG   
Sbjct: 402 -IFSWNAMISGYAQSLSPQLALHLFREMISSSQVKPDAITMVSVFSAISSLGSLEEGKRA 460

Query: 442 FESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYL--WNALHGVCRI 499
            + +     I PN    A +I++ A+ G  +  +N   +      S +  WNA+      
Sbjct: 461 HDYLNFST-IPPNDNLTAAIIDMYAKCGSIETALNIFHQTKNISSSTISPWNAIICGSAT 519

Query: 500 HGNIDMGRKVVDQL--IDQNPQSSATHGLLSS 529
           HG+  +   +   L  +   P S    G+LS+
Sbjct: 520 HGHAKLALDLYSDLQSLPIKPNSITFVGVLSA 551



 Score =  145 bits (365), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 105/406 (25%), Positives = 192/406 (47%), Gaps = 18/406 (4%)

Query: 184 NEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLF 243
            E +    L  C    ++   RQ+H +VL +G  SN  I +S+++ YAKC  L+DA  +F
Sbjct: 40  TERALVSALGSCASSNDVTCGRQIHCRVLKSGLDSNGYICNSVLNMYAKCRLLADAESVF 99

Query: 244 DETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALE 303
            +    D  ++  MV GY +   +  A KLF+ MPE++ VS+TTLI GY +N    +A+E
Sbjct: 100 RDHAKLDSASFNIMVDGYVRSRRLWDALKLFDVMPERSCVSYTTLIKGYAQNNQWSEAME 159

Query: 304 LFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYS 363
           LF  M  L I  N+ T ++ + AC+ +  +   + +    I+        V ++L+ MY 
Sbjct: 160 LFREMRNLGIMLNEVTLATVISACSHLGGIWDCRMLQSLAIKLKLEGRVFVSTNLLHMYC 219

Query: 364 KCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLA 423
            C CL D R++FD    + N + WN M++  ++ G  EQA  LF  +     + D ++  
Sbjct: 220 LCLCLKDARKLFDEMPER-NLVTWNVMLNGYSKAGLIEQAEELFDQI----TEKDIVSWG 274

Query: 424 VILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSD---QLMNQLEK 480
            +++ C     + E L Y+  M    G+ P++     L+   A++  S    QL   + K
Sbjct: 275 TMIDGCLRKNQLDEALVYYTEMLR-CGMKPSEVMMVDLLSASARSVGSSKGLQLHGTIVK 333

Query: 481 MPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLV 540
             ++   +L   +     +  +I +  +  +  +  +  S       +++ +   K  +V
Sbjct: 334 RGFDCYDFLQATIIHFYAVSNDIKLALQQFEASVKDHIASR------NALIAGFVKNGMV 387

Query: 541 EKVRQLINERQFKKEQAISW-IEIENKVHAFSVSDSLHPMRDVLYS 585
           E+ R++ +  Q   +   SW   I     + S   +LH  R+++ S
Sbjct: 388 EQAREVFD--QTHDKDIFSWNAMISGYAQSLSPQLALHLFREMISS 431


>gi|359492768|ref|XP_002279149.2| PREDICTED: pentatricopeptide repeat-containing protein At1g43980,
           mitochondrial-like [Vitis vinifera]
          Length = 665

 Score =  288 bits (738), Expect = 5e-75,   Method: Compositional matrix adjust.
 Identities = 171/612 (27%), Positives = 303/612 (49%), Gaps = 76/612 (12%)

Query: 58  ILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVK 117
           +++ C   KSL   K VH  L      T  TFL N  + +Y + G+  D+ +VF+ I  K
Sbjct: 43  LIEHCFLLKSLDYAKFVHAQLIKVGFNT-HTFLGNRCLDLYSQLGTGNDSLRVFEDIIDK 101

Query: 118 NLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLR 177
           NL S+N  L  +   G ++ AR++FD M +RDVVSWNTMI GY   G  ++  +F+  ++
Sbjct: 102 NLISWNIFLKAFVRFGELERARDVFDEMPKRDVVSWNTMISGYVSFGLFDDAFRFFSEMQ 161

Query: 178 RFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGF-LSNVVISSSIVDAYAKCGEL 236
           +  I  + F+++ +L+    +      +Q+H  ++  G  LSNVV+ +S++  Y K G +
Sbjct: 162 KAGIRPSGFTYSTLLSF---VSSACRGKQIHASMIRNGVDLSNVVVGNSLIGMYGKFGVV 218

Query: 237 SDARRLFDETDARDVLTWTTMV-----SGYAKLG-------------------------- 265
             A  +F   +  D+ +W +++     SGY  L                           
Sbjct: 219 DYAFGVFITMEELDITSWNSLIWSCGKSGYQNLALRQFVLMRSVGYSPDQFTVSTVITVC 278

Query: 266 ----DMESASKLF-----------------------------------NEMPEKNPVSWT 286
               D+E   ++F                                    E+ + + V   
Sbjct: 279 SNLQDLEKGEQIFALCIRVGFLSNSIVSSASIDLFSKCNRLEDSVRVFEEIYQWDSVLCN 338

Query: 287 TLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRT 346
            +I+ Y  +G G+ AL+LF   +   +RP + T S  L A + ++ +  G Q+H  ++++
Sbjct: 339 AMISSYAWHGFGENALQLFVLTLRENLRPTEFTLSIVLSAVSILLPVDQGSQIHSLVVKS 398

Query: 347 NFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRL 406
              S+ IV SSL++MY+K G ++   + F     + + + WNTMI  L  +G   +A+ +
Sbjct: 399 GLESDVIVASSLVEMYAKFGLIDSAMKTFAKIGAR-DLISWNTMIMGLAYNGRVSKALEI 457

Query: 407 FHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLA 466
           F +++     PD+ITLA +L AC   GLV EGL+ F SM  + G+IP  EH+AC++++++
Sbjct: 458 FKELLIGGPPPDEITLAGVLLACNVGGLVDEGLSIFSSMEKEYGVIPAIEHYACIVDMMS 517

Query: 467 QAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGL 526
           + G   + M+ +E MP+E    +W +L   C I+G++    +V +++++  PQSS  + +
Sbjct: 518 RGGKLKEAMDIVELMPHEPSGLIWGSLLCACEIYGDLRFTERVAERVMELEPQSSLPYLV 577

Query: 527 LSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSV 586
           L+  Y   G+   + +VR+ + E+  +K    SWI I+N V  F  +  LH     +Y +
Sbjct: 578 LAQAYEMRGRWESLVRVRRAMKEKGVRKVIGCSWIGIKNHVFVFKENQLLHIGGKDIYFI 637

Query: 587 LEQLAGQMGEDA 598
           L  L  ++ +D 
Sbjct: 638 LRLLIQEIEDDG 649



 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 88/315 (27%), Positives = 168/315 (53%), Gaps = 7/315 (2%)

Query: 188 FAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETD 247
           ++ ++  C  L+ L   + VH Q++  GF ++  + +  +D Y++ G  +D+ R+F++  
Sbjct: 40  YSNLIEHCFLLKSLDYAKFVHAQLIKVGFNTHTFLGNRCLDLYSQLGTGNDSLRVFEDII 99

Query: 248 ARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTR 307
            +++++W   +  + + G++E A  +F+EMP+++ VSW T+I+GY   GL   A   F+ 
Sbjct: 100 DKNLISWNIFLKAFVRFGELERARDVFDEMPKRDVVSWNTMISGYVSFGLFDDAFRFFSE 159

Query: 308 MMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFR-SNTIVMSSLIDMYSKCG 366
           M    IRP+  T+S+ L   +S      GKQ+H  +IR     SN +V +SLI MY K G
Sbjct: 160 MQKAGIRPSGFTYSTLLSFVSSAC---RGKQIHASMIRNGVDLSNVVVGNSLIGMYGKFG 216

Query: 367 CLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVIL 426
            ++    VF +T  + +   WN++I +  + GY   A+R F  M      PD+ T++ ++
Sbjct: 217 VVDYAFGVF-ITMEELDITSWNSLIWSCGKSGYQNLALRQFVLMRSVGYSPDQFTVSTVI 275

Query: 427 NACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHD 486
             C++   +++G   F ++   +G + N    +  I+L ++    +  +   E++ Y+ D
Sbjct: 276 TVCSNLQDLEKGEQIF-ALCIRVGFLSNSIVSSASIDLFSKCNRLEDSVRVFEEI-YQWD 333

Query: 487 SYLWNALHGVCRIHG 501
           S L NA+      HG
Sbjct: 334 SVLCNAMISSYAWHG 348


>gi|225456890|ref|XP_002277458.1| PREDICTED: pentatricopeptide repeat-containing protein At1g08070
           [Vitis vinifera]
          Length = 698

 Score =  288 bits (738), Expect = 5e-75,   Method: Compositional matrix adjust.
 Identities = 168/588 (28%), Positives = 297/588 (50%), Gaps = 68/588 (11%)

Query: 8   RGINRKNLPN-NCLIQSFLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESK 66
           R I+  + P  N +I+ F     K    EAI     + +  ++    T   IL+ C+  +
Sbjct: 82  RQIDEPDSPAYNIMIRGF---TLKQSPHEAILLFKEMHENSVQPDEFTFPCILKVCSRLQ 138

Query: 67  SLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNML 126
           +L  G+++H                    ++  KCG                 F  N ++
Sbjct: 139 ALSEGEQIH--------------------ALIMKCGFGSHG------------FVKNTLI 166

Query: 127 SGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEF 186
             YAN G ++ AR +FD M+ER+V +WN+M  GY KSG  EE +K +  +    I  +E 
Sbjct: 167 HMYANCGEVEVARRVFDEMSERNVRTWNSMFAGYTKSGNWEEVVKLFHEMLELDIRFDEV 226

Query: 187 SFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDET 246
           +   +LT C +L +L+L   ++  V   G   N  + +S+VD YA               
Sbjct: 227 TLVSVLTACGRLADLELGEWINRYVEEKGLKGNPTLITSLVDMYA--------------- 271

Query: 247 DARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFT 306
                           K G +++A +LF++M  ++ V+W+ +I+GY++    ++AL+LF 
Sbjct: 272 ----------------KCGQVDTARRLFDQMDRRDVVAWSAMISGYSQASRCREALDLFH 315

Query: 307 RMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCG 366
            M    I PN+ T  S L +CA + +L+ GK VH F+ +   +    + ++L+D Y+KCG
Sbjct: 316 EMQKANIDPNEITMVSILSSCAVLGALETGKWVHFFIKKKRMKLTVTLGTALMDFYAKCG 375

Query: 367 CLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVIL 426
            +    +VF     K N + W  +I  L  +G  ++A+  F+ M+  +V+P+ +T   +L
Sbjct: 376 SVESSIEVFGKMPVK-NVLSWTVLIQGLASNGQGKKALEYFYLMLEKNVEPNDVTFIGVL 434

Query: 427 NACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHD 486
           +AC+H+GLV EG   F SM+ D GI P  EH+ C++++L +AG  ++    ++ MP + +
Sbjct: 435 SACSHAGLVDEGRDLFVSMSRDFGIEPRIEHYGCMVDILGRAGLIEEAFQFIKNMPIQPN 494

Query: 487 SYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQL 546
           + +W  L   C++H N+++G + + QLI   P  S  + LLS+IY+++G+     KVR  
Sbjct: 495 AVIWRTLLASCKVHKNVEIGEESLKQLIILEPTHSGDYILLSNIYASVGRWEDALKVRGE 554

Query: 547 INERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQM 594
           + E+  KK    S IE++  +H F   D++H   + +Y+ +E +  Q+
Sbjct: 555 MKEKGIKKTPGCSLIELDGVIHEFFAEDNVHSQSEEIYNAIEDMMKQI 602



 Score =  112 bits (279), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 74/283 (26%), Positives = 142/283 (50%), Gaps = 17/283 (6%)

Query: 267 MESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCA 326
           M+ A  +F ++ E +  ++  +I G+T      +A+ LF  M    ++P++ TF   L  
Sbjct: 74  MDYAVSIFRQIDEPDSPAYNIMIRGFTLKQSPHEAILLFKEMHENSVQPDEFTFPCILKV 133

Query: 327 CASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSML 386
           C+ + +L  G+Q+H  +++  F S+  V ++LI MY+ CG +   R+VFD    + N   
Sbjct: 134 CSRLQALSEGEQIHALIMKCGFGSHGFVKNTLIHMYANCGEVEVARRVFDEMSER-NVRT 192

Query: 387 WNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMT 446
           WN+M +  T+ G  E+ ++LFH+M+   ++ D++TL  +L AC     ++ G  +     
Sbjct: 193 WNSMFAGYTKSGNWEEVVKLFHEMLELDIRFDEVTLVSVLTACGRLADLELG-EWINRYV 251

Query: 447 HDLGIIPNQEHHACLIELLAQAGCSD---QLMNQLEKMPYEHDSYLWNAL----HGVCRI 499
            + G+  N      L+++ A+ G  D   +L +Q+++     D   W+A+        R 
Sbjct: 252 EEKGLKGNPTLITSLVDMYAKCGQVDTARRLFDQMDR----RDVVAWSAMISGYSQASRC 307

Query: 500 HGNIDMGRKVVDQLIDQNPQSSATHGLLSS--IYSALGKGRLV 540
              +D+  ++    ID N  +  +  +LSS  +  AL  G+ V
Sbjct: 308 REALDLFHEMQKANIDPNEITMVS--ILSSCAVLGALETGKWV 348


>gi|357154074|ref|XP_003576661.1| PREDICTED: pentatricopeptide repeat-containing protein At3g24000,
           mitochondrial-like [Brachypodium distachyon]
          Length = 802

 Score =  288 bits (738), Expect = 5e-75,   Method: Compositional matrix adjust.
 Identities = 166/549 (30%), Positives = 276/549 (50%), Gaps = 66/549 (12%)

Query: 56  AFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIP 115
           AFI   CA+SK+L   +++H HL  + R     FL N LI +Y KCGS V+A KV     
Sbjct: 56  AFI-TACAQSKNLDDARKIHAHLA-SSRFAGDAFLDNSLIHLYCKCGSVVEAHKV----- 108

Query: 116 VKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKV 175
                                     FD M  +D+VSW ++I GYA++    E +     
Sbjct: 109 --------------------------FDKMRNKDMVSWTSLIAGYAQNDMPAEAIGLLPG 142

Query: 176 LRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGE 235
           + +     N F+FA +L       +  +  Q+H   +   +  +V + S+++D YA+C  
Sbjct: 143 MLKGRFKPNGFTFASLLKAVGAYADSGIGGQIHALAVKCDWHEDVYVGSALLDMYARC-- 200

Query: 236 LSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRN 295
                                        G M+ A+ +F+++  KN VSW  LI+G+ R 
Sbjct: 201 -----------------------------GKMDMATAVFDKLDSKNGVSWNALISGFARK 231

Query: 296 GLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVM 355
           G G+ AL +F  M          T+SS   A A I +L+ GK VH  +I++  +    V 
Sbjct: 232 GDGETALMVFAEMQRNGFEATHFTYSSIFSALAGIGALEQGKWVHAHMIKSRQKLTAFVG 291

Query: 356 SSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSV 415
           ++++DMY+K G + D R+VF+   NK + + WN+M++A  Q+G  ++A+  F +M +S +
Sbjct: 292 NTMLDMYAKSGSMIDARKVFERVLNK-DLVTWNSMLTAFAQYGLGKEAVSHFEEMRKSGI 350

Query: 416 KPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLM 475
             ++I+   IL AC+H GLV+EG  YF+ M  +  + P  EH+  +++LL +AG  +  +
Sbjct: 351 YLNQISFLCILTACSHGGLVKEGKHYFD-MIKEYNLEPEIEHYVTVVDLLGRAGLLNYAL 409

Query: 476 NQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALG 535
             + KMP E  + +W AL   CR+H N  +G+   D +   +P  S    LL +IY++ G
Sbjct: 410 VFIFKMPMEPTAAVWGALLAACRMHKNAKVGQFAADHVFQLDPDDSGPPVLLYNIYASTG 469

Query: 536 KGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQMG 595
                 +VR+++     KKE A SW+EIEN VH F  +D  HP  + +Y + ++++ ++ 
Sbjct: 470 HWDAAARVRKMMKATGVKKEPACSWVEIENSVHMFVANDDTHPRAEEIYKMWDEISMKIR 529

Query: 596 EDAPSLDAD 604
           ++    D D
Sbjct: 530 KEGYVPDMD 538



 Score = 78.6 bits (192), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 48/168 (28%), Positives = 89/168 (52%), Gaps = 8/168 (4%)

Query: 18  NCLIQSFLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLH 77
           N LI  F     KG    A+     + + G      T + I    A   +L+ GK VH H
Sbjct: 222 NALISGF---ARKGDGETALMVFAEMQRNGFEATHFTYSSIFSALAGIGALEQGKWVHAH 278

Query: 78  LKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKH 137
           + +  R+  T F+ N ++ MY K GS +DARKVF+++  K+L ++N+ML+ +A  G+ K 
Sbjct: 279 M-IKSRQKLTAFVGNTMLDMYAKSGSMIDARKVFERVLNKDLVTWNSMLTAFAQYGLGKE 337

Query: 138 ARNLFDNMAERDV----VSWNTMIIGYAKSGAVEEGLKFYKVLRRFSI 181
           A + F+ M +  +    +S+  ++   +  G V+EG  ++ +++ +++
Sbjct: 338 AVSHFEEMRKSGIYLNQISFLCILTACSHGGLVKEGKHYFDMIKEYNL 385



 Score = 75.1 bits (183), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 68/282 (24%), Positives = 123/282 (43%), Gaps = 16/282 (5%)

Query: 313 IRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGR 372
           + P    + + + ACA   +L   +++H  L  + F  +  + +SLI +Y KCG + +  
Sbjct: 47  LAPTPRVYHAFITACAQSKNLDDARKIHAHLASSRFAGDAFLDNSLIHLYCKCGSVVEAH 106

Query: 373 QVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHS 432
           +VFD   NK + + W ++I+   Q+    +AI L   M++   KP+  T A +L A    
Sbjct: 107 KVFDKMRNK-DMVSWTSLIAGYAQNDMPAEAIGLLPGMLKGRFKPNGFTFASLLKAV--G 163

Query: 433 GLVQEGLTYFESMTHDLGIIPNQEHH----ACLIELLAQAGCSDQLMNQLEKMPYEHDSY 488
                G+       H L +  +        + L+++ A+ G  D      +K+  + +  
Sbjct: 164 AYADSGIG---GQIHALAVKCDWHEDVYVGSALLDMYARCGKMDMATAVFDKLDSK-NGV 219

Query: 489 LWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSAL-GKGRLVEKVRQLI 547
            WNAL       G+ +    V  ++  Q     ATH   SSI+SAL G G L +   + +
Sbjct: 220 SWNALISGFARKGDGETALMVFAEM--QRNGFEATHFTYSSIFSALAGIGALEQG--KWV 275

Query: 548 NERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQ 589
           +    K  Q ++       +  ++ S S+   R V   VL +
Sbjct: 276 HAHMIKSRQKLTAFVGNTMLDMYAKSGSMIDARKVFERVLNK 317


>gi|449434296|ref|XP_004134932.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
 gi|449479547|ref|XP_004155632.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
          Length = 638

 Score =  288 bits (738), Expect = 5e-75,   Method: Compositional matrix adjust.
 Identities = 147/454 (32%), Positives = 252/454 (55%), Gaps = 3/454 (0%)

Query: 137 HARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYK-VLRRFSISCNEFSFAGILTIC 195
           +A +++++++   V + N MI  + K       +  Y  + R F  + N+ +   +L  C
Sbjct: 84  YALSIYNSISHPTVFATNNMIRCFVKGDLPRHSISLYSHMCRSFVAAPNKHTLTFVLQAC 143

Query: 196 VKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDET-DARDVLTW 254
                ++   QV   V+  GF+ +V + ++++  Y  C  +  A+++FDE   +RDV++W
Sbjct: 144 SNAFAIREGAQVQTHVIKLGFVKDVFVRNALIHLYCTCCRVESAKQVFDEVPSSRDVVSW 203

Query: 255 TTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIR 314
            +M+ G+ +LG +  A KLF EMPEK+ +SW T+I+G  +NG  +KAL+ F  +   ++R
Sbjct: 204 NSMIVGFVRLGQISVAQKLFVEMPEKDVISWGTIISGCVQNGELEKALDYFKELGEQKLR 263

Query: 315 PNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQV 374
           PN+    S L A A + +L++GK++H       F     + ++L+DMY+KCGC+++ R +
Sbjct: 264 PNEAILVSLLAAAAQLGTLEYGKRIHSIANSLRFPMTASLGTALVDMYAKCGCIDESRFL 323

Query: 375 FDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGL 434
           FD    K+    WN MI  L  HG  ++A+ LF   +     P  +T   +L AC+ +GL
Sbjct: 324 FDRMPEKDK-WSWNVMICGLATHGLGQEALALFEKFLTQGFHPVNVTFIGVLTACSRAGL 382

Query: 435 VQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALH 494
           V EG  +F+ MT   GI P  EH+ C+++LL++AG     +  + +MP   D  LW ++ 
Sbjct: 383 VSEGKHFFKLMTDTYGIEPEMEHYGCMVDLLSRAGFVYDAVEMINRMPAPPDPVLWASVL 442

Query: 495 GVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKK 554
           G C++HG I++G ++ ++LI  +P  +  +  L+ I++ L K   V KVR+L+ ER   K
Sbjct: 443 GSCQVHGFIELGEEIGNKLIQMDPTHNGHYVQLARIFARLRKWEDVSKVRRLMAERNSNK 502

Query: 555 EQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLE 588
               S IE E +VH F   D  H     +Y +LE
Sbjct: 503 IAGWSLIEAEGRVHRFVAGDKEHERTTEIYKMLE 536



 Score =  155 bits (393), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 108/408 (26%), Positives = 191/408 (46%), Gaps = 42/408 (10%)

Query: 1   MPSNFSPRGINRKNLPNNCLIQSFLSLISKGQLSE-AISSLDLLAQRGIRLP-AETLAFI 58
           +PS+++    N  + P      + +    KG L   +IS    + +  +  P   TL F+
Sbjct: 80  LPSDYALSIYNSISHPTVFATNNMIRCFVKGDLPRHSISLYSHMCRSFVAAPNKHTLTFV 139

Query: 59  LQQCAESKSLKLGKRVHLH-LKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPV- 116
           LQ C+ + +++ G +V  H +KL   K    F+ N LI +Y  C     A++VFD++P  
Sbjct: 140 LQACSNAFAIREGAQVQTHVIKLGFVKD--VFVRNALIHLYCTCCRVESAKQVFDEVPSS 197

Query: 117 KNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVL 176
           +++ S+N+M+ G+  LG +  A+ LF  M E+DV+SW T+I G  ++G +E+ L ++K L
Sbjct: 198 RDVVSWNSMIVGFVRLGQISVAQKLFVEMPEKDVISWGTIISGCVQNGELEKALDYFKEL 257

Query: 177 RRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGEL 236
               +  NE     +L    +L  L+  +++H       F     + +++VD YAKCG +
Sbjct: 258 GEQKLRPNEAILVSLLAAAAQLGTLEYGKRIHSIANSLRFPMTASLGTALVDMYAKCGCI 317

Query: 237 SDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNG 296
            ++R LFD    +D  +W  M+ G A                                +G
Sbjct: 318 DESRFLFDRMPEKDKWSWNVMICGLAT-------------------------------HG 346

Query: 297 LGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVM- 355
           LGQ+AL LF + +     P   TF   L AC+    +  GK  H F + T+       M 
Sbjct: 347 LGQEALALFEKFLTQGFHPVNVTFIGVLTACSRAGLVSEGK--HFFKLMTDTYGIEPEME 404

Query: 356 --SSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDE 401
               ++D+ S+ G + D  ++ +      + +LW +++ +   HG+ E
Sbjct: 405 HYGCMVDLLSRAGFVYDAVEMINRMPAPPDPVLWASVLGSCQVHGFIE 452


>gi|356545987|ref|XP_003541414.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
           mitochondrial-like [Glycine max]
          Length = 613

 Score =  288 bits (738), Expect = 5e-75,   Method: Compositional matrix adjust.
 Identities = 163/531 (30%), Positives = 282/531 (53%), Gaps = 38/531 (7%)

Query: 54  TLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDK 113
           T  F+L+ CA+    +LG +VH H+                    FK G +         
Sbjct: 82  TFPFLLKSCAKLSLPRLGLQVHTHV--------------------FKSGFE--------- 112

Query: 114 IPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFY 173
               N+F  N +L  Y   G  ++A  +FD    RD VS+NT+I G  ++G     ++ +
Sbjct: 113 ---SNVFVVNALLQVYFVFGDARNACRVFDESPVRDSVSYNTVINGLVRAGRAGCSMRIF 169

Query: 174 KVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVL--VTGFLSNVVISSSIVDAYA 231
             +R   +  +E++F  +L+ C  LE+  + R VHG V   +  F  N ++ +++VD YA
Sbjct: 170 AEMRGGFVEPDEYTFVALLSACSLLEDRGIGRVVHGLVYRKLGCFGENELLVNALVDMYA 229

Query: 232 KCGELSDARRLFDETDARD-VLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIA 290
           KCG L  A R+    + +  V  WT++VS YA  G++E A +LF++M E++ VSWT +I+
Sbjct: 230 KCGCLEVAERVVRNGNGKSGVAAWTSLVSAYALRGEVEVARRLFDQMGERDVVSWTAMIS 289

Query: 291 GYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRS 350
           GY   G  Q+ALELF  +  L + P++    + L ACA + +L+ G+++H    R +++ 
Sbjct: 290 GYCHAGCFQEALELFVELEDLGMEPDEVVVVAALSACARLGALELGRRIHHKYDRDSWQC 349

Query: 351 --NTIVMSSLIDMYSKCGCLNDGRQVF-DLTDNKENSMLWNTMISALTQHGYDEQAIRLF 407
             N     +++DMY+KCG +     VF   +D+ + + L+N+++S L  HG  E A+ LF
Sbjct: 350 GHNRGFTCAVVDMYAKCGSIEAALDVFLKTSDDMKTTFLYNSIMSGLAHHGRGEHAMALF 409

Query: 408 HDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQ 467
            +M    ++PD++T   +L AC HSGLV  G   FESM  + G+ P  EH+ C+++LL +
Sbjct: 410 EEMRLVGLEPDEVTYVALLCACGHSGLVDHGKRLFESMLSEYGVNPQMEHYGCMVDLLGR 469

Query: 468 AGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLL 527
           AG  ++    ++ MP++ ++ +W AL   C++ G++++ R    +L+       A + +L
Sbjct: 470 AGHLNEAYLLIQNMPFKANAVIWRALLSACKVDGDVELARLASQELLAMENDHGARYVML 529

Query: 528 SSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHP 578
           S++ + + K      VR+ I+    +K    S +E+   +H F   D  HP
Sbjct: 530 SNMLTLMDKHDEAASVRRAIDNVGIQKPPGWSHVEMNGTLHKFLAGDKSHP 580



 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 92/330 (27%), Positives = 156/330 (47%), Gaps = 40/330 (12%)

Query: 130 ANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFS--ISCNEFS 187
           AN   + H+  LF  +   D+  +N +I  ++ S      L  YK +   S  I  + F+
Sbjct: 23  ANSNALHHSHLLFTQIPNPDLFLFNLIIRAFSLSQTPHNALSLYKKMLSSSPPIFPDTFT 82

Query: 188 FAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETD 247
           F  +L  C KL   +L  QVH  V  +GF SNV + ++++  Y   G+  +A R+FDE+ 
Sbjct: 83  FPFLLKSCAKLSLPRLGLQVHTHVFKSGFESNVFVVNALLQVYFVFGDARNACRVFDESP 142

Query: 248 ARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTR 307
            RD +++ T+++G  + G    + ++F EM                R G           
Sbjct: 143 VRDSVSYNTVINGLVRAGRAGCSMRIFAEM----------------RGGF---------- 176

Query: 308 MMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRT--NFRSNTIVMSSLIDMYSKC 365
                + P+++TF + L AC+ +     G+ VHG + R    F  N +++++L+DMY+KC
Sbjct: 177 -----VEPDEYTFVALLSACSLLEDRGIGRVVHGLVYRKLGCFGENELLVNALVDMYAKC 231

Query: 366 GCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVI 425
           GCL    +V    + K     W +++SA    G  E A RLF  M       D ++   +
Sbjct: 232 GCLEVAERVVRNGNGKSGVAAWTSLVSAYALRGEVEVARRLFDQMGER----DVVSWTAM 287

Query: 426 LNACTHSGLVQEGLTYFESMTHDLGIIPNQ 455
           ++   H+G  QE L  F  +  DLG+ P++
Sbjct: 288 ISGYCHAGCFQEALELFVEL-EDLGMEPDE 316



 Score = 56.2 bits (134), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 47/171 (27%), Positives = 78/171 (45%), Gaps = 23/171 (13%)

Query: 21  IQSFLSLIS----KGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHL 76
           + S+ ++IS     G   EA+     L   G+      +   L  CA   +L+LG+R+H 
Sbjct: 281 VVSWTAMISGYCHAGCFQEALELFVELEDLGMEPDEVVVVAALSACARLGALELGRRIH- 339

Query: 77  HLKLTQRKTPTTFLSNH-------LISMYFKCGSDVDARKVFDKIP--VKNLFSYNNMLS 127
                 +    ++   H       ++ MY KCGS   A  VF K    +K  F YN+++S
Sbjct: 340 -----HKYDRDSWQCGHNRGFTCAVVDMYAKCGSIEAALDVFLKTSDDMKTTFLYNSIMS 394

Query: 128 GYANLGMMKHARNLFDNMA----ERDVVSWNTMIIGYAKSGAVEEGLKFYK 174
           G A+ G  +HA  LF+ M     E D V++  ++     SG V+ G + ++
Sbjct: 395 GLAHHGRGEHAMALFEEMRLVGLEPDEVTYVALLCACGHSGLVDHGKRLFE 445


>gi|297841915|ref|XP_002888839.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297334680|gb|EFH65098.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 682

 Score =  288 bits (737), Expect = 5e-75,   Method: Compositional matrix adjust.
 Identities = 169/590 (28%), Positives = 310/590 (52%), Gaps = 43/590 (7%)

Query: 15  LPNNCLIQSFLSLISKGQL-SEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKR 73
           LP N LI S+    +K +L  E +++   +  +GIR  A T   +L+ C E+  +  G+ 
Sbjct: 111 LPWNVLIASY----AKNELFEEVVAAYKRMVSKGIRPDAFTYPSVLKACGETLDVASGRV 166

Query: 74  VHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLG 133
           VH  ++++  K  + ++ N LISMY + G+   AR++FD +  ++  S+N +++ YA++G
Sbjct: 167 VHGSIEVSSYKC-SLYVCNALISMYKRFGNVGIARRLFDHMSERDAVSWNAVINCYASVG 225

Query: 134 MMKHARNLFDNM----AERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFA 189
           M   A  LFD M     E  V++WN +  GY  +G     L     +R F  S +  +  
Sbjct: 226 MWSEAFELFDKMRFSGVEVSVITWNIISGGYLHTGNYVGALGLISRMRNFPTSLDPVAMI 285

Query: 190 GILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDAR 249
             L  C  +  ++L +++HG  +   +     + ++++  Y+KC +L +A  +F +T+  
Sbjct: 286 IGLKACSLIGAIRLGKEIHGLAIHRSYDGIDNVRNTLITMYSKCDDLRNAFIVFQKTEEN 345

Query: 250 DVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMM 309
            + TW +++SGYA++   E AS L  EM          L+AG+                 
Sbjct: 346 SLCTWNSIISGYAQVNKSEEASYLLREM----------LLAGF----------------- 378

Query: 310 ILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTN-FRSNTIVMSSLIDMYSKCGCL 368
               +PN  T +S L  CA I +L+HGK+ H +++R   F+  T++ +SL+D+Y+K G +
Sbjct: 379 ----QPNFITLASILPLCARIANLQHGKEFHCYILRRKCFKDYTMLWNSLVDVYAKSGKI 434

Query: 369 NDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNA 428
              +QV +L  ++ + + + ++I      G    A+ LF +M+RS +KPD +T+  +L+A
Sbjct: 435 VAAKQVSNLM-SEIDEVTYTSLIDGYGNQGEGRVALALFDEMIRSGIKPDPVTMVAVLSA 493

Query: 429 CTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSY 488
           C+HS LV EG   F  M    GI P  +H +C+++L  +AG   +  + + +MPYE    
Sbjct: 494 CSHSKLVHEGQRLFMKMQPKYGIRPCLQHFSCMVDLYGRAGFLAKAKDIIHRMPYEPSGA 553

Query: 489 LWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLIN 548
            W  L   C IHGN ++G+   ++L++  P++   + L++++Y+  G    + +VR ++ 
Sbjct: 554 TWATLLNACHIHGNTEIGKWAAEKLLEMKPENPGYYVLIANMYATAGSWSKLAEVRTIMR 613

Query: 549 ERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQMGEDA 598
           +   +K+   +WI  ++    FSV D+ +P     Y +L+ L   M + A
Sbjct: 614 DLGVRKDPGCAWINTDSGFSLFSVGDTSNPQACDTYPLLDGLNQLMKDTA 663



 Score =  151 bits (382), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 114/422 (27%), Positives = 199/422 (47%), Gaps = 46/422 (10%)

Query: 125 MLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCN 184
           +++ Y+   + + A+++ +N      + WN +I  YAK+   EE +  YK +    I  +
Sbjct: 85  LVTFYSAFNLHREAQSINENSDILHPLPWNVLIASYAKNELFEEVVAAYKRMVSKGIRPD 144

Query: 185 EFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFD 244
            F++  +L  C +  ++   R VHG + V+ +  ++ + ++++  Y + G +  ARRLFD
Sbjct: 145 AFTYPSVLKACGETLDVASGRVVHGSIEVSSYKCSLYVCNALISMYKRFGNVGIARRLFD 204

Query: 245 ETDARDVLTWTTMVSGYAKLGDMESASKLFNEM----PEKNPVSWTTLIAGYTRNGLGQK 300
               RD ++W  +++ YA +G    A +LF++M     E + ++W  +  GY   G    
Sbjct: 205 HMSERDAVSWNAVINCYASVGMWSEAFELFDKMRFSGVEVSVITWNIISGGYLHTGNYVG 264

Query: 301 ALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLID 360
           AL L +RM       +       L AC+ I +++ GK++HG  I  ++     V ++LI 
Sbjct: 265 ALGLISRMRNFPTSLDPVAMIIGLKACSLIGAIRLGKEIHGLAIHRSYDGIDNVRNTLIT 324

Query: 361 MYSKCGCLNDGRQVFDLTDNKENSML-WNTMISALTQHGYDEQAIRLFHDMVRSSVKPDK 419
           MYSKC  L +   VF  T+  ENS+  WN++IS   Q    E+A  L  +M+ +  +P+ 
Sbjct: 325 MYSKCDDLRNAFIVFQKTE--ENSLCTWNSIISGYAQVNKSEEASYLLREMLLAGFQPNF 382

Query: 420 ITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLE 479
           ITLA IL  C     +Q G                +E H C I               L 
Sbjct: 383 ITLASILPLCARIANLQHG----------------KEFH-CYI---------------LR 410

Query: 480 KMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQL--IDQNPQSSATHGLLSSIYSALGKG 537
           +  ++  + LWN+L  V    G I   ++V + +  ID+   +S   G     Y   G+G
Sbjct: 411 RKCFKDYTMLWNSLVDVYAKSGKIVAAKQVSNLMSEIDEVTYTSLIDG-----YGNQGEG 465

Query: 538 RL 539
           R+
Sbjct: 466 RV 467



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 60/247 (24%), Positives = 110/247 (44%), Gaps = 32/247 (12%)

Query: 187 SFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDET 246
           S A +L+ CV +       Q+H   + +G   +  +   +V  Y+      +A+ + + +
Sbjct: 46  SAASLLSACVDVLAFVPGLQIHAHCVSSGVEYHSALVPKLVTFYSAFNLHREAQSINENS 105

Query: 247 DARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFT 306
           D    L W  +++ YAK       ++LF E           ++A Y              
Sbjct: 106 DILHPLPWNVLIASYAK-------NELFEE-----------VVAAY-------------K 134

Query: 307 RMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCG 366
           RM+   IRP+  T+ S L AC   + +  G+ VHG +  ++++ +  V ++LI MY + G
Sbjct: 135 RMVSKGIRPDAFTYPSVLKACGETLDVASGRVVHGSIEVSSYKCSLYVCNALISMYKRFG 194

Query: 367 CLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVIL 426
            +   R++FD    ++ ++ WN +I+     G   +A  LF  M  S V+   IT  +I 
Sbjct: 195 NVGIARRLFDHMSERD-AVSWNAVINCYASVGMWSEAFELFDKMRFSGVEVSVITWNIIS 253

Query: 427 NACTHSG 433
               H+G
Sbjct: 254 GGYLHTG 260



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 40/205 (19%), Positives = 84/205 (40%), Gaps = 38/205 (18%)

Query: 318 HTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDL 377
           H+ +S L AC  +++   G Q+H   + +    ++ ++  L+  YS     N  R+   +
Sbjct: 45  HSAASLLSACVDVLAFVPGLQIHAHCVSSGVEYHSALVPKLVTFYSA---FNLHREAQSI 101

Query: 378 TDNKE--NSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLV 435
            +N +  + + WN +I++  ++   E+ +  +  MV   ++PD  T   +L AC  +  V
Sbjct: 102 NENSDILHPLPWNVLIASYAKNELFEEVVAAYKRMVSKGIRPDAFTYPSVLKACGETLDV 161

Query: 436 QEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHG 495
             G     S                                 +E   Y+   Y+ NAL  
Sbjct: 162 ASGRVVHGS---------------------------------IEVSSYKCSLYVCNALIS 188

Query: 496 VCRIHGNIDMGRKVVDQLIDQNPQS 520
           + +  GN+ + R++ D + +++  S
Sbjct: 189 MYKRFGNVGIARRLFDHMSERDAVS 213


>gi|225459429|ref|XP_002284321.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g20230-like [Vitis vinifera]
          Length = 700

 Score =  288 bits (737), Expect = 5e-75,   Method: Compositional matrix adjust.
 Identities = 184/623 (29%), Positives = 299/623 (47%), Gaps = 93/623 (14%)

Query: 28  ISKGQLSEAISSLDLLAQRGIRLPAE----TLAFILQQCAESKSLKLGKRVHLHLKLTQR 83
           +  G L +A   LD+ + R +  P +    T+A IL  C   K+L+LGK +H  + L   
Sbjct: 21  VQNGYLEDA---LDMFS-RMLWYPEDPNIITIASILPACTGLKALRLGKAIH-AIALKHG 75

Query: 84  KTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYAN-------LGMMK 136
                ++   +I MY KCGS   A KVF K   KN   +N M++ Y N       LG+++
Sbjct: 76  IVGNVYVEGSVIDMYSKCGSYDYAEKVFVKAENKNTAMWNEMIAAYVNEGKVEDALGLLR 135

Query: 137 --------------------HARN-----LFDNMAE-------RDVVSWNTMIIGYAKSG 164
                               HARN      F+ ++E        +VVS+N +I G+ +SG
Sbjct: 136 SMQKDGWKPDVITYNTILSGHARNGLKTQAFELLSEMVQMGLKPNVVSFNVLISGFQQSG 195

Query: 165 AVEEGLKFYKVLRRFSISCNE------------FSFAGILTICVKLEELKLTRQVHGQVL 212
              E LK +++++  S  CN              +  G L  C  L      +++HG  L
Sbjct: 196 LSYEALKVFRIMQSPSDGCNPNEVLNLSMRPNPITITGALPACADLNLWCQGKEIHGYTL 255

Query: 213 VTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASK 272
             GF  N+ +SS++VD YAKC                                DM+SA+K
Sbjct: 256 RNGFEPNIFVSSALVDMYAKCH-------------------------------DMDSANK 284

Query: 273 LFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVS 332
           +F  +  +N VSW  L+AGY  N   ++AL+LF  M+   ++P+  TF     AC  I +
Sbjct: 285 VFFRIDGRNTVSWNALMAGYIYNKQPEEALKLFLEMLGEGLQPSSITFMILFPACGDIAA 344

Query: 333 LKHGKQVHGFLIRTNFRS-NTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMI 391
           ++ G+ +HG+  +         + S+LIDMY+KCG + D + VFD ++ +++  LWN MI
Sbjct: 345 IRFGRGLHGYAAKCQLDELKNAIASALIDMYAKCGSILDAKSVFD-SEVEKDVPLWNAMI 403

Query: 392 SALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGI 451
           SA + HG    A  +F  M    + PD IT   +L+AC   GLV+EG  YF SM    G+
Sbjct: 404 SAFSVHGMARNAFAVFVQMELLGILPDHITFVSLLSACARDGLVEEGWKYFNSMEISYGV 463

Query: 452 IPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVD 511
               EH+ C++ +L  AG  D+ ++ + +MPY  D+ +W  L   CR+H N ++G +   
Sbjct: 464 AATLEHYTCMVGILGGAGLLDEALDFIRQMPYPPDACMWATLLQACRVHSNPEIGERAAK 523

Query: 512 QLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFS 571
            L +  P ++  + LLS+IY + G     + +R  +  R+    +  S++ + + +  F 
Sbjct: 524 ALFELEPDNATNYMLLSNIYVSSGMWDFAKNLRSFMRGRKLLTIKECSYLTVGSHICTFK 583

Query: 572 VSDSLHPMRDVLYSVLEQLAGQM 594
             +S HP  + +    ++LA +M
Sbjct: 584 GGESSHPELEEILEAWDKLARKM 606



 Score =  165 bits (417), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 119/465 (25%), Positives = 205/465 (44%), Gaps = 65/465 (13%)

Query: 145 MAERD----VVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEE 200
           M ER     V SWN +I G  ++G +E+ L  +  +  +    N  + A IL  C  L+ 
Sbjct: 1   MPERGLQPTVNSWNGIISGCVQNGYLEDALDMFSRMLWYPEDPNIITIASILPACTGLKA 60

Query: 201 LKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSG 260
           L+L + +H   L  G + NV +  S++D Y+KCG    A ++F + + ++   W  M++ 
Sbjct: 61  LRLGKAIHAIALKHGIVGNVYVEGSVIDMYSKCGSYDYAEKVFVKAENKNTAMWNEMIAA 120

Query: 261 YAKLGDMESASKLFNEMP----EKNPVSWTTLIAGYTRNGLGQKALELFTRMM------- 309
           Y   G +E A  L   M     + + +++ T+++G+ RNGL  +A EL + M+       
Sbjct: 121 YVNEGKVEDALGLLRSMQKDGWKPDVITYNTILSGHARNGLKTQAFELLSEMVQMGLKPN 180

Query: 310 ----------------------ILRI------------------RPNQHTFSSCLCACAS 329
                                 + RI                  RPN  T +  L ACA 
Sbjct: 181 VVSFNVLISGFQQSGLSYEALKVFRIMQSPSDGCNPNEVLNLSMRPNPITITGALPACAD 240

Query: 330 IVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNT 389
           +     GK++HG+ +R  F  N  V S+L+DMY+KC  ++   +VF   D + N++ WN 
Sbjct: 241 LNLWCQGKEIHGYTLRNGFEPNIFVSSALVDMYAKCHDMDSANKVFFRIDGR-NTVSWNA 299

Query: 390 MISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQ--EGLTYFESMTH 447
           +++    +   E+A++LF +M+   ++P  IT  ++  AC     ++   GL  + +   
Sbjct: 300 LMAGYIYNKQPEEALKLFLEMLGEGLQPSSITFMILFPACGDIAAIRFGRGLHGYAAKCQ 359

Query: 448 DLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGR 507
            L  + N    A LI++ A+ G      +  +    E D  LWNA+     +HG   M R
Sbjct: 360 -LDELKNAIASA-LIDMYAKCGSILDAKSVFDS-EVEKDVPLWNAMISAFSVHG---MAR 413

Query: 508 KVVDQLIDQNPQSS-ATHGLLSSIYSALGKGRLVEKVRQLINERQ 551
                 +          H    S+ SA  +  LVE+  +  N  +
Sbjct: 414 NAFAVFVQMELLGILPDHITFVSLLSACARDGLVEEGWKYFNSME 458


>gi|345505214|gb|AEN99831.1| chlororespiratory reduction 4 [Brassica rapa]
          Length = 612

 Score =  288 bits (737), Expect = 5e-75,   Method: Compositional matrix adjust.
 Identities = 169/540 (31%), Positives = 279/540 (51%), Gaps = 45/540 (8%)

Query: 35  EAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHL 94
           +A+  L L+ + G+ +   + +  L+ C+    +K G +VH  L  T   +   FL N L
Sbjct: 111 KALFLLCLMLENGVPVDKFSFSLALKACSRLGFVKEGTQVHGFLIKTGTWS-DLFLQNCL 169

Query: 95  ISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMA--ERDVVS 152
           I +Y KCG    AR+VFD++P ++  SYN+M+ GY   G+++ A  LF  M   +R++++
Sbjct: 170 IGLYIKCGCLGFARQVFDRMPQRDSVSYNSMIDGYLKCGLVESAGELFGLMPREKRNLIT 229

Query: 153 WNTMIIGYA-KSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQV 211
           WN+MI GYA ++  V    K +  +                                   
Sbjct: 230 WNSMIGGYAQRADGVNVAAKLFDEMPE--------------------------------- 256

Query: 212 LVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESAS 271
                  +++  +S++  Y K G + DA+ LFD    RDV+TW  M+ GY KLG +  A 
Sbjct: 257 ------KDLISWNSMIGGYVKHGRIEDAKGLFDVMPRRDVVTWAIMIDGYGKLGLVHEAK 310

Query: 272 KLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRM-MILRIRPNQHTFSSCLCACASI 330
            LF++MP ++ V + ++++G  +N    +ALE+F  M     + P++ +    L A A +
Sbjct: 311 TLFDQMPHRDVVVYNSMMSGXVQNRYHMEALEVFNHMEKESHLTPDETSLVIVLSAXAQL 370

Query: 331 VSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTM 390
             L     +H +++   F S+  +  +LIDMYSKCG +    +VF+  ++K     WN M
Sbjct: 371 GRLSKAIDMHLYIVEKQFPSSGKLGVALIDMYSKCGSIQHAMRVFEGIESKSIDH-WNAM 429

Query: 391 ISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLG 450
           I  L  HG  E A  +   + R S+KPD IT   +LNAC+HSGLV+EGL  FE M     
Sbjct: 430 IGGLAVHGLGESAFDMLLQIERRSIKPDHITFVGVLNACSHSGLVKEGLLCFELMRRKHK 489

Query: 451 IIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVV 510
           I P  +H+ C++++LA++G  +   N +E MP E +  +W      C  H   + G  V 
Sbjct: 490 IEPRLQHYGCMVDILARSGSIELAKNLIEGMPIEPNDVIWRTFLTACSHHKEFETGELVA 549

Query: 511 DQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAF 570
             LI Q   + +++ LLS++Y++ G  + V +VR ++ E+  +K    SWIE++ +VH F
Sbjct: 550 KHLILQAGYNPSSYVLLSNMYASNGMWKDVRRVRTMMKEKNIEKIPGCSWIELDGRVHEF 609



 Score =  131 bits (330), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 99/378 (26%), Positives = 188/378 (49%), Gaps = 34/378 (8%)

Query: 149 DVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVH 208
           D   WN +I  ++      + L    ++    +  ++FSF+  L  C +L  +K   QVH
Sbjct: 92  DPFLWNVVIKSHSHGVDPRKALFLLCLMLENGVPVDKFSFSLALKACSRLGFVKEGTQVH 151

Query: 209 GQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDME 268
           G ++ TG  S++ + + ++  Y KCG L  AR++FD    RD +++ +M+ GY K G +E
Sbjct: 152 GFLIKTGTWSDLFLQNCLIGLYIKCGCLGFARQVFDRMPQRDSVSYNSMIDGYLKCGLVE 211

Query: 269 SASKLFNEMP--EKNPVSWTTLIAGYTRNGLG-QKALELFTRMMILRIRPNQHTFSSCLC 325
           SA +LF  MP  ++N ++W ++I GY +   G   A +LF  M      P +      L 
Sbjct: 212 SAGELFGLMPREKRNLITWNSMIGGYAQRADGVNVAAKLFDEM------PEKD-----LI 260

Query: 326 ACASIVS--LKHGK-QVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKE 382
           +  S++   +KHG+ +    L     R + +  + +ID Y K G +++ + +FD   ++ 
Sbjct: 261 SWNSMIGGYVKHGRIEDAKGLFDVMPRRDVVTWAIMIDGYGKLGLVHEAKTLFDQMPHR- 319

Query: 383 NSMLWNTMISALTQHGYDEQAIRLFHDMVRSS-VKPDKITLAVILNACTHSGLVQEGLTY 441
           + +++N+M+S   Q+ Y  +A+ +F+ M + S + PD+ +L ++L+A    G + + +  
Sbjct: 320 DVVVYNSMMSGXVQNRYHMEALEVFNHMEKESHLTPDETSLVIVLSAXAQLGRLSKAIDM 379

Query: 442 FESMTHDLGIIPNQ-----EHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGV 496
                  L I+  Q     +    LI++ ++ G     M   E +  +   + WNA+ G 
Sbjct: 380 ------HLYIVEKQFPSSGKLGVALIDMYSKCGSIQHAMRVFEGIESKSIDH-WNAMIGG 432

Query: 497 CRIHGNIDMGRKVVDQLI 514
             +HG   +G    D L+
Sbjct: 433 LAVHG---LGESAFDMLL 447



 Score = 85.5 bits (210), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 65/207 (31%), Positives = 104/207 (50%), Gaps = 17/207 (8%)

Query: 206 QVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLG 265
           ++H +++ TG + N  +++ IV A+A     + +RR F    AR V     + S     G
Sbjct: 33  KLHARLITTGLIKNPDLTTRIVLAFASASASASSRRPFLAEFARCVFHEHHVSSS----G 88

Query: 266 DMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLC 325
           ++E            +P  W  +I  ++     +KAL L   M+   +  ++ +FS  L 
Sbjct: 89  EVE------------DPFLWNVVIKSHSHGVDPRKALFLLCLMLENGVPVDKFSFSLALK 136

Query: 326 ACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSM 385
           AC+ +  +K G QVHGFLI+T   S+  + + LI +Y KCGCL   RQVFD    + +S+
Sbjct: 137 ACSRLGFVKEGTQVHGFLIKTGTWSDLFLQNCLIGLYIKCGCLGFARQVFDRMPQR-DSV 195

Query: 386 LWNTMISALTQHGYDEQAIRLFHDMVR 412
            +N+MI    + G  E A  LF  M R
Sbjct: 196 SYNSMIDGYLKCGLVESAGELFGLMPR 222


>gi|225465296|ref|XP_002268999.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g14470-like [Vitis vinifera]
          Length = 729

 Score =  288 bits (737), Expect = 6e-75,   Method: Compositional matrix adjust.
 Identities = 160/506 (31%), Positives = 272/506 (53%), Gaps = 38/506 (7%)

Query: 92  NHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVV 151
           N ++S Y+K  S+  A+ +FD +P +N+ ++  M++GYA +  ++ AR  FD M ER VV
Sbjct: 167 NAMVSGYWKWESEGQAQWLFDVMPERNVITWTAMVTGYAKVKDLEAARRYFDCMPERSVV 226

Query: 152 SWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQV 211
           SWN M+ GYA++G  EE L+ +  +    I  +E ++  +++ C                
Sbjct: 227 SWNAMLSGYAQNGLAEEALRLFDEMVNAGIEPDETTWVTVISAC---------------- 270

Query: 212 LVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESAS 271
                       SS  D    C   S  R L  +    +    T ++  YAK GD++SA 
Sbjct: 271 ------------SSRGD---PCLAASLVRTLHQKRIQLNCFVRTALLDMYAKFGDLDSAR 315

Query: 272 KLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILR-IRPNQHTFSSCLCACASI 330
           KLFN MP +N V+W ++IAGY +NG    A+ELF  M+  + + P++ T  S + AC  +
Sbjct: 316 KLFNTMPGRNVVTWNSMIAGYAQNGQSAMAIELFKEMITAKKLTPDEVTMVSVISACGHL 375

Query: 331 VSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTM 390
            +L+ G  V  FL     + +    +++I MYS+CG + D ++VF     ++  + +NT+
Sbjct: 376 GALELGNWVVRFLTENQIKLSISGHNAMIFMYSRCGSMEDAKRVFQEMATRD-VVSYNTL 434

Query: 391 ISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLG 450
           IS    HG+  +AI L   M    ++PD++T   +L AC+H+GL++EG   FES+     
Sbjct: 435 ISGFAAHGHGVEAINLMSTMKEGGIEPDRVTFIGVLTACSHAGLLEEGRKVFESIKD--- 491

Query: 451 IIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVV 510
             P  +H+AC+++LL + G  +     +E+MP E  + ++ +L    RIH  +++G    
Sbjct: 492 --PAIDHYACMVDLLGRVGELEDAKRTMERMPMEPHAGVYGSLLNASRIHKQVELGELAA 549

Query: 511 DQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAF 570
           ++L +  P +S    LLS+IY++ G+ + VE++R+ + +   KK    SW+E   K+H F
Sbjct: 550 NKLFELEPDNSGNFILLSNIYASAGRWKDVERIREAMKKGGVKKTTGWSWVEYGGKLHKF 609

Query: 571 SVSDSLHPMRDVLYSVLEQLAGQMGE 596
            V+D  H   D +Y +L +L  +M E
Sbjct: 610 IVADRSHERSDDIYQLLIELRKKMRE 635



 Score =  158 bits (399), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 98/342 (28%), Positives = 180/342 (52%), Gaps = 29/342 (8%)

Query: 110 VFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNM---AERDVVSWNTMIIGYAKSGAV 166
           +F+     N+F + +ML  Y++L        +++ M     R       ++I  A +G  
Sbjct: 56  LFNSTLNPNVFVFTSMLRFYSHLQDHAKVVLMYEQMQGCGVRPDAFVYPILIKSAGTG-- 113

Query: 167 EEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSI 226
             G+ F+  + +     + F    ++ +  +L  +   R+V  ++    +   V   +++
Sbjct: 114 --GIGFHAHVLKLGHGSDAFVRNAVIDMYARLGPIGHARKVFDEI--PDYERKVADWNAM 169

Query: 227 VDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWT 286
           V  Y K      A+ LFD    R+V+TWT MV+GYAK+ D+E+A + F+ MPE++ VSW 
Sbjct: 170 VSGYWKWESEGQAQWLFDVMPERNVITWTAMVTGYAKVKDLEAARRYFDCMPERSVVSWN 229

Query: 287 TLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCAC---------ASIVSLKHGK 337
            +++GY +NGL ++AL LF  M+   I P++ T+ + + AC         AS+V   H K
Sbjct: 230 AMLSGYAQNGLAEEALRLFDEMVNAGIEPDETTWVTVISACSSRGDPCLAASLVRTLHQK 289

Query: 338 QVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQH 397
           ++         + N  V ++L+DMY+K G L+  R++F+    + N + WN+MI+   Q+
Sbjct: 290 RI---------QLNCFVRTALLDMYAKFGDLDSARKLFNTMPGR-NVVTWNSMIAGYAQN 339

Query: 398 GYDEQAIRLFHDMVRS-SVKPDKITLAVILNACTHSGLVQEG 438
           G    AI LF +M+ +  + PD++T+  +++AC H G ++ G
Sbjct: 340 GQSAMAIELFKEMITAKKLTPDEVTMVSVISACGHLGALELG 381



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 75/342 (21%), Positives = 139/342 (40%), Gaps = 33/342 (9%)

Query: 242 LFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMP----EKNPVSWTTLIAGYTRNGL 297
           LF+ T   +V  +T+M+  Y+ L D      ++ +M       +   +  LI      G+
Sbjct: 56  LFNSTLNPNVFVFTSMLRFYSHLQDHAKVVLMYEQMQGCGVRPDAFVYPILIKSAGTGGI 115

Query: 298 GQKALEL--------FTRMMIL----RIRPNQHT---------FSSCLCACASIVSLKHG 336
           G  A  L        F R  ++    R+ P  H          +   +    ++VS    
Sbjct: 116 GFHAHVLKLGHGSDAFVRNAVIDMYARLGPIGHARKVFDEIPDYERKVADWNAMVSGYWK 175

Query: 337 KQVHG---FLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISA 393
            +  G   +L       N I  ++++  Y+K   L   R+ FD    + + + WN M+S 
Sbjct: 176 WESEGQAQWLFDVMPERNVITWTAMVTGYAKVKDLEAARRYFDCMPER-SVVSWNAMLSG 234

Query: 394 LTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIP 453
             Q+G  E+A+RLF +MV + ++PD+ T   +++AC+  G      +   ++ H   I  
Sbjct: 235 YAQNGLAEEALRLFDEMVNAGIEPDETTWVTVISACSSRGDPCLAASLVRTL-HQKRIQL 293

Query: 454 NQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQL 513
           N      L+++ A+ G  D        MP   +   WN++      +G   M  ++  ++
Sbjct: 294 NCFVRTALLDMYAKFGDLDSARKLFNTMP-GRNVVTWNSMIAGYAQNGQSAMAIELFKEM 352

Query: 514 IDQNPQSSATHGLLSSIYSA--LGKGRLVEKVRQLINERQFK 553
           I     +     ++S I +   LG   L   V + + E Q K
Sbjct: 353 ITAKKLTPDEVTMVSVISACGHLGALELGNWVVRFLTENQIK 394


>gi|357128207|ref|XP_003565766.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g33680-like [Brachypodium distachyon]
          Length = 734

 Score =  288 bits (737), Expect = 6e-75,   Method: Compositional matrix adjust.
 Identities = 154/476 (32%), Positives = 254/476 (53%), Gaps = 32/476 (6%)

Query: 123 NNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSIS 182
           N++++ YA  G M  A ++F++  ER+ ++W+ MI GY+++G  E  ++ +  +      
Sbjct: 259 NSLVTMYAKAGCMDAAFHVFESSKERNSITWSAMITGYSQNGNAESAVRMFSQMHAAGFP 318

Query: 183 CNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRL 242
             EF+  G+L  C  +  L   +Q HG ++  GF   V + S++VD YAKCG + D    
Sbjct: 319 PTEFTLVGVLNACSDVGTLMEGKQAHGLMVKLGFEVQVYVKSALVDMYAKCGCIGD---- 374

Query: 243 FDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKAL 302
                                      A + FN+  E + V WT ++ G+ +NG  ++AL
Sbjct: 375 ---------------------------AKECFNQFSELDIVLWTAMVTGHVQNGEFEQAL 407

Query: 303 ELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMY 362
            L+ RM    + PN  T +S L ACA + +L+ GKQ+H  +++  F     V S+L  MY
Sbjct: 408 MLYARMDKEGVFPNTLTITSLLRACAGLAALEPGKQLHTQILKFGFGLGASVGSALSTMY 467

Query: 363 SKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITL 422
           SKCG L DG  VF    +++  + WN++IS  +Q+G    AI LF +M      PD +T 
Sbjct: 468 SKCGNLEDGMVVFRRMPHRD-VIAWNSIISGFSQNGRGNDAINLFEEMKLEGTAPDPVTF 526

Query: 423 AVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMP 482
             +L AC+H GLV  G TYF SM  D G+ P  +H+AC++++L++AG   +  + +E + 
Sbjct: 527 INVLCACSHMGLVDRGWTYFRSMIKDYGLTPRLDHYACMVDILSRAGMLSEAKDFIESIT 586

Query: 483 YEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEK 542
            +H + LW  + G CR   + D+G    ++L+D     SA + LLS+IY+A  K   VE+
Sbjct: 587 IDHGTCLWRIVLGACRSLRDFDVGAYAGEKLMDLGTGDSAAYILLSNIYAAQRKWNDVER 646

Query: 543 VRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQMGEDA 598
           VR L+      K+   SW+E+ ++VH F V +  HP  +++ + L +L   M ++ 
Sbjct: 647 VRYLMKLVGVSKDPGCSWVELNSRVHVFVVGEQQHPDAEIINTELRRLGKHMKDEG 702



 Score =  173 bits (439), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 105/377 (27%), Positives = 184/377 (48%), Gaps = 35/377 (9%)

Query: 118 NLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLK-FYKVL 176
           N+F    +L+ Y  LG++  A+ +FD M  R+ VSW  M+ GYA     +E  + F ++L
Sbjct: 152 NVFVSTALLNMYCKLGLIPDAQLVFDEMPHRNEVSWAAMVAGYAARKCSQEAFELFRQML 211

Query: 177 RRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGEL 236
               +  NEF    +L+       L +  QVHG V+  G +  V + +S+V  YAK G +
Sbjct: 212 GECPLHKNEFVATAVLSAISVPLGLPMGVQVHGLVVKDGMVGFVSVENSLVTMYAKAGCM 271

Query: 237 SDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNG 296
             A  +F+ +  R+ +TW+ M++GY++ G+ ESA ++F++M            AG+    
Sbjct: 272 DAAFHVFESSKERNSITWSAMITGYSQNGNAESAVRMFSQMHA----------AGFP--- 318

Query: 297 LGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMS 356
                             P + T    L AC+ + +L  GKQ HG +++  F     V S
Sbjct: 319 ------------------PTEFTLVGVLNACSDVGTLMEGKQAHGLMVKLGFEVQVYVKS 360

Query: 357 SLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVK 416
           +L+DMY+KCGC+ D ++ F+   ++ + +LW  M++   Q+G  EQA+ L+  M +  V 
Sbjct: 361 ALVDMYAKCGCIGDAKECFN-QFSELDIVLWTAMVTGHVQNGEFEQALMLYARMDKEGVF 419

Query: 417 PDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMN 476
           P+ +T+  +L AC     ++ G     +     G        + L  + ++ G  +  M 
Sbjct: 420 PNTLTITSLLRACAGLAALEPG-KQLHTQILKFGFGLGASVGSALSTMYSKCGNLEDGMV 478

Query: 477 QLEKMPYEHDSYLWNAL 493
              +MP+  D   WN++
Sbjct: 479 VFRRMPHR-DVIAWNSI 494



 Score =  112 bits (280), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 80/346 (23%), Positives = 143/346 (41%), Gaps = 67/346 (19%)

Query: 51  PAE-TLAFILQQCAESKSLKLGKRVH-LHLKLTQRKTPTTFLSNHLISMYFKCGSDVDAR 108
           P E TL  +L  C++  +L  GK+ H L +KL        ++ + L+ MY KCG   DA+
Sbjct: 319 PTEFTLVGVLNACSDVGTLMEGKQAHGLMVKLGFEVQ--VYVKSALVDMYAKCGCIGDAK 376

Query: 109 KVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEE 168
           + F++                                +E D+V W  M+ G+ ++G  E+
Sbjct: 377 ECFNQF-------------------------------SELDIVLWTAMVTGHVQNGEFEQ 405

Query: 169 GLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVD 228
            L  Y  + +  +  N  +   +L  C  L  L+  +Q+H Q+L  GF     + S++  
Sbjct: 406 ALMLYARMDKEGVFPNTLTITSLLRACAGLAALEPGKQLHTQILKFGFGLGASVGSALST 465

Query: 229 AYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTL 288
            Y+KCG L D   +F     RDV+ W +++SG+                           
Sbjct: 466 MYSKCGNLEDGMVVFRRMPHRDVIAWNSIISGF--------------------------- 498

Query: 289 IAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRT-N 347
               ++NG G  A+ LF  M +    P+  TF + LCAC+ +  +  G      +I+   
Sbjct: 499 ----SQNGRGNDAINLFEEMKLEGTAPDPVTFINVLCACSHMGLVDRGWTYFRSMIKDYG 554

Query: 348 FRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISA 393
                   + ++D+ S+ G L++ +   +       + LW  ++ A
Sbjct: 555 LTPRLDHYACMVDILSRAGMLSEAKDFIESITIDHGTCLWRIVLGA 600



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 36/151 (23%), Positives = 77/151 (50%), Gaps = 5/151 (3%)

Query: 28  ISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPT 87
           +  G+  +A+     + + G+     T+  +L+ CA   +L+ GK++H  + L       
Sbjct: 398 VQNGEFEQALMLYARMDKEGVFPNTLTITSLLRACAGLAALEPGKQLHTQI-LKFGFGLG 456

Query: 88  TFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNM-- 145
             + + L +MY KCG+  D   VF ++P +++ ++N+++SG++  G    A NLF+ M  
Sbjct: 457 ASVGSALSTMYSKCGNLEDGMVVFRRMPHRDVIAWNSIISGFSQNGRGNDAINLFEEMKL 516

Query: 146 --AERDVVSWNTMIIGYAKSGAVEEGLKFYK 174
                D V++  ++   +  G V+ G  +++
Sbjct: 517 EGTAPDPVTFINVLCACSHMGLVDRGWTYFR 547



 Score = 53.1 bits (126), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 71/321 (22%), Positives = 135/321 (42%), Gaps = 56/321 (17%)

Query: 207 VHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGD 266
           +H   L +G  S+  +S+S++  Y      S   RLF             + + +A   D
Sbjct: 34  LHAWALKSGSSSHAPVSNSLITFY------SSFPRLF-------------LPAAFAVFAD 74

Query: 267 MESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILR-IRPNQHTFSSCLC 325
           + +A++        +  SW +L+   + +     AL  F  M+    I P+ H+F++   
Sbjct: 75  IPAAAR--------DVASWNSLLNPLSHH-RPLAALSHFRSMLSSSTILPSPHSFAAAFT 125

Query: 326 ACASIVSLKHGKQVHGFLIR-TNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENS 384
           A A   S   G  VH    +  +  SN  V ++L++MY K G + D + VFD   ++ N 
Sbjct: 126 AAARAHSASAGAVVHALACKLPSASSNVFVSTALLNMYCKLGLIPDAQLVFDEMPHR-NE 184

Query: 385 MLWNTMISALTQHGYDEQAIRLFHDMV-RSSVKPDKITLAVILNACT-----------HS 432
           + W  M++        ++A  LF  M+    +  ++     +L+A +           H 
Sbjct: 185 VSWAAMVAGYAARKCSQEAFELFRQMLGECPLHKNEFVATAVLSAISVPLGLPMGVQVHG 244

Query: 433 GLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNA 492
            +V++G+  F S+ +             L+ + A+AGC D   +  E    E +S  W+A
Sbjct: 245 LVVKDGMVGFVSVENS------------LVTMYAKAGCMDAAFHVFES-SKERNSITWSA 291

Query: 493 LHGVCRIHGNIDMGRKVVDQL 513
           +      +GN +   ++  Q+
Sbjct: 292 MITGYSQNGNAESAVRMFSQM 312


>gi|147817753|emb|CAN66661.1| hypothetical protein VITISV_031721 [Vitis vinifera]
          Length = 569

 Score =  288 bits (737), Expect = 6e-75,   Method: Compositional matrix adjust.
 Identities = 163/522 (31%), Positives = 283/522 (54%), Gaps = 19/522 (3%)

Query: 98  YFKCGSDVDARKVFDKIPVKNLFSYNN-----MLSGYANLGMMKHARNLFDNMAERDVVS 152
           +  C +    +++  +I V N FS  N     +LS Y   G + +A  +F+ +       
Sbjct: 41  HITCDTIKKLKQIHTQIIV-NGFSQKNFLLVKLLSFYITSGNLLNAHKVFERIENPSTTV 99

Query: 153 WNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVL 212
           WN MI G+++S    + ++ Y  +       NEF+++ ++  C +   L+   QVHG+V+
Sbjct: 100 WNQMIRGHSQSETPHKLVELYNRMVEAEAEPNEFTYSFLIGGCARSXLLREGEQVHGRVV 159

Query: 213 VTGFLSNVVISSSIVDAYAKCGE---LSDARRLFDETDARDVLTWTTMVSGYAKLGDMES 269
             G+ +NV + +S+V+ YA  G    +  ARR+FDE   R++++W ++++GY + GD++ 
Sbjct: 160 ANGYCTNVFVRTSLVNLYAIAGGYDGVRKARRVFDEIVDRNIVSWNSLLAGYVRCGDVDG 219

Query: 270 ASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACAS 329
           A ++F+EMPE+N VSWTT+IAG  + G  ++AL LF  M    ++ +Q    + L ACA 
Sbjct: 220 ARRIFDEMPERNVVSWTTMIAGCAQIGRCKQALHLFHEMRRAGVKLDQVALVAALSACAE 279

Query: 330 IVSLKHGKQVHGFLIRTNFRSNTIVM----SSLIDMYSKCGCLNDGRQVFDLTDNKENSM 385
           +  LK G  +H ++       N  ++    +SLI MY+ CG ++   +VF +   + +++
Sbjct: 280 LGDLKLGTWIHSYIDERLHAGNQPLLVSLNNSLIHMYASCGVIDKAYKVF-IGMQQRSTI 338

Query: 386 LWNTMISALTQHGYDEQAIRLFHDMVRSSV---KPDKITLAVILNACTHSGLVQEGLTYF 442
            W +MI+   + G+ E+A+ +F  M R      +PD IT   +L AC+H+G V +G  +F
Sbjct: 339 SWTSMITGFAKQGHAEEALGVFQWMQRLGTDEGRPDGITFIGVLCACSHAGFVDQGRHFF 398

Query: 443 ESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGN 502
           E M    GI+P  EH+ C+++LL++AG  D+     E MP + +  +W AL G CRIH N
Sbjct: 399 ECMNKKWGIVPRIEHYGCMVDLLSRAGFLDEAHRLXESMPMKPNDAVWGALLGGCRIHKN 458

Query: 503 IDMGRKVVDQLI-DQNPQSSATH-GLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISW 560
            ++   V  +L+ +  P  +A +  LLS++Y+   + + V  VRQ + E   +K    SW
Sbjct: 459 AELASHVAQKLVLELKPDQAAGYLVLLSNVYATAKRWQDVALVRQKMVEIGVRKPAGRSW 518

Query: 561 IEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQMGEDAPSLD 602
           ++I   VH F   D  H     +Y +L ++  Q   +   LD
Sbjct: 519 VQINGVVHDFVAGDWTHKHASSVYEMLSKITRQAKLEGYKLD 560



 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 108/408 (26%), Positives = 186/408 (45%), Gaps = 48/408 (11%)

Query: 34  SEAISSLDLLAQRGIRLPAE----TLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTF 89
           SE    L  L  R +   AE    T +F++  CA S  L+ G++VH  + +        F
Sbjct: 110 SETPHKLVELYNRMVEAEAEPNEFTYSFLIGGCARSXLLREGEQVHGRV-VANGYCTNVF 168

Query: 90  LSNHLISMYFKCGSD---VDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMA 146
           +   L+++Y   G       AR+VFD+I  +N+ S+N++L+GY   G +  AR +FD M 
Sbjct: 169 VRTSLVNLYAIAGGYDGVRKARRVFDEIVDRNIVSWNSLLAGYVRCGDVDGARRIFDEMP 228

Query: 147 ERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQ 206
           ER+VVSW TMI G A+ G  ++ L  +  +RR  +  ++ +    L+ C +L +LKL   
Sbjct: 229 ERNVVSWTTMIAGCAQIGRCKQALHLFHEMRRAGVKLDQVALVAALSACAELGDLKLGTW 288

Query: 207 VHGQVLVTGFLSN----VVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYA 262
           +H  +       N    V +++S++  YA CG +  A ++F     R  ++WT+M++G+A
Sbjct: 289 IHSYIDERLHAGNQPLLVSLNNSLIHMYASCGVIDKAYKVFIGMQQRSTISWTSMITGFA 348

Query: 263 KLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSS 322
           K G  E A  +F  M                             R+     RP+  TF  
Sbjct: 349 KQGHAEEALGVFQWM----------------------------QRLGTDEGRPDGITFIG 380

Query: 323 CLCACASIVSLKHGKQVHGFLIRTNFRSNTIV----MSSLIDMYSKCGCLNDGRQVFDLT 378
            LCAC+    +  G+    F    N +   +        ++D+ S+ G L++  ++ +  
Sbjct: 381 VLCACSHAGFVDQGRH---FFECMNKKWGIVPRIEHYGCMVDLLSRAGFLDEAHRLXESM 437

Query: 379 DNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVIL 426
             K N  +W  ++     H   E A  +   +V   +KPD+    ++L
Sbjct: 438 PMKPNDAVWGALLGGCRIHKNAELASHVAQKLVL-ELKPDQAAGYLVL 484



 Score = 59.3 bits (142), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 41/158 (25%), Positives = 76/158 (48%), Gaps = 10/158 (6%)

Query: 31  GQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHL--KLTQRKTPTT 88
           G+  +A+     + + G++L    L   L  CAE   LKLG  +H ++  +L     P  
Sbjct: 246 GRCKQALHLFHEMRRAGVKLDQVALVAALSACAELGDLKLGTWIHSYIDERLHAGNQPLL 305

Query: 89  F-LSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNM-- 145
             L+N LI MY  CG    A KVF  +  ++  S+ +M++G+A  G  + A  +F  M  
Sbjct: 306 VSLNNSLIHMYASCGVIDKAYKVFIGMQQRSTISWTSMITGFAKQGHAEEALGVFQWMQR 365

Query: 146 -----AERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRR 178
                   D +++  ++   + +G V++G  F++ + +
Sbjct: 366 LGTDEGRPDGITFIGVLCACSHAGFVDQGRHFFECMNK 403


>gi|3297823|emb|CAA19881.1| putative protein [Arabidopsis thaliana]
 gi|7270348|emb|CAB80116.1| putative protein [Arabidopsis thaliana]
          Length = 844

 Score =  288 bits (737), Expect = 6e-75,   Method: Compositional matrix adjust.
 Identities = 176/618 (28%), Positives = 302/618 (48%), Gaps = 90/618 (14%)

Query: 31  GQLSEAISSLDL-LAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTF 89
           G  SE I    L +   G+     T   +L+ C   +++  G ++H  L L        +
Sbjct: 64  GNSSEVIRCFSLFMLSSGLTPDYRTFPSVLKAC---RTVIDGNKIHC-LALKFGFMWDVY 119

Query: 90  LSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHA----------- 138
           ++  LI +Y +  +  +AR +FD++PV+++ S+N M+SGY   G  K A           
Sbjct: 120 VAASLIHLYSRYKAVGNARILFDEMPVRDMGSWNAMISGYCQSGNAKEALTLSNGLRAMD 179

Query: 139 ----------------------------------------RNLFDNMAERDVVSWNTMII 158
                                                   + +FD M  RD++SWN++I 
Sbjct: 180 SVTVVSLLSACTEAGDFNRGVTIHSYSIKHGLESELLRDCQKVFDRMYVRDLISWNSIIK 239

Query: 159 GYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTG-FL 217
            Y  +      +  ++ +R   I  +  +   + +I  +L +++  R V G  L  G FL
Sbjct: 240 AYELNEQPLRAISLFQEMRLSRIQPDCLTLISLASILSQLGDIRACRSVQGFTLRKGWFL 299

Query: 218 SNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEM 277
            ++ I +++V  YAK                               LG ++SA  +FN +
Sbjct: 300 EDITIGNAVVVMYAK-------------------------------LGLVDSARAVFNWL 328

Query: 278 PEKNPVSWTTLIAGYTRNGLGQKALELFTRMMIL-RIRPNQHTFSSCLCACASIVSLKHG 336
           P  + +SW T+I+GY +NG   +A+E++  M     I  NQ T+ S L AC+   +L+ G
Sbjct: 329 PNTDVISWNTIISGYAQNGFASEAIEMYNIMEEEGEIAANQGTWVSVLPACSQAGALRQG 388

Query: 337 KQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQ 396
            ++HG L++     +  V++SL DMY KCG L D   +F     + NS+ WNT+I+    
Sbjct: 389 MKLHGRLLKNGLYLDVFVVTSLADMYGKCGRLEDALSLF-YQIPRVNSVPWNTLIACHGF 447

Query: 397 HGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQE 456
           HG+ E+A+ LF +M+   VKPD IT   +L+AC+HSGLV EG   FE M  D GI P+ +
Sbjct: 448 HGHGEKAVMLFKEMLDEGVKPDHITFVTLLSACSHSGLVDEGQWCFEMMQTDYGITPSLK 507

Query: 457 HHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQ 516
           H+ C++++  +AG  +  +  ++ M  + D+ +W AL   CR+HGN+D+G+   + L + 
Sbjct: 508 HYGCMVDMYGRAGQLETALKFIKSMSLQPDASIWGALLSACRVHGNVDLGKIASEHLFEV 567

Query: 517 NPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSL 576
            P+    H LLS++Y++ GK   V+++R + + +  +K    S +E++NKV  F   +  
Sbjct: 568 EPEHVGYHVLLSNMYASAGKWEGVDEIRSIAHGKGLRKTPGWSSMEVDNKVEVFYTGNQT 627

Query: 577 HPMRDVLYSVLEQLAGQM 594
           HPM + +Y  L  L  ++
Sbjct: 628 HPMYEEMYRELTALQAKL 645



 Score =  138 bits (348), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 104/471 (22%), Positives = 215/471 (45%), Gaps = 62/471 (13%)

Query: 126 LSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFS-ISCN 184
           +S + +L   K   + FD++  RDV +WN MI GY ++G   E ++ + +    S ++ +
Sbjct: 26  VSTHVSLSPNKSKMHTFDHIQNRDVYAWNLMISGYGRAGNSSEVIRCFSLFMLSSGLTPD 85

Query: 185 EFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFD 244
             +F  +L  C  + +     ++H   L  GF+ +V +++S++  Y++   + +AR LFD
Sbjct: 86  YRTFPSVLKACRTVID---GNKIHCLALKFGFMWDVYVAASLIHLYSRYKAVGNARILFD 142

Query: 245 ETDARDVLTWTTMVSGYAKLGDMESA---------------------------------- 270
           E   RD+ +W  M+SGY + G+ + A                                  
Sbjct: 143 EMPVRDMGSWNAMISGYCQSGNAKEALTLSNGLRAMDSVTVVSLLSACTEAGDFNRGVTI 202

Query: 271 -----------------SKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRI 313
                             K+F+ M  ++ +SW ++I  Y  N    +A+ LF  M + RI
Sbjct: 203 HSYSIKHGLESELLRDCQKVFDRMYVRDLISWNSIIKAYELNEQPLRAISLFQEMRLSRI 262

Query: 314 RPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTN-FRSNTIVMSSLIDMYSKCGCLNDGR 372
           +P+  T  S     + +  ++  + V GF +R   F  +  + ++++ MY+K G ++  R
Sbjct: 263 QPDCLTLISLASILSQLGDIRACRSVQGFTLRKGWFLEDITIGNAVVVMYAKLGLVDSAR 322

Query: 373 QVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDM-VRSSVKPDKITLAVILNACTH 431
            VF+   N +  + WNT+IS   Q+G+  +AI +++ M     +  ++ T   +L AC+ 
Sbjct: 323 AVFNWLPNTD-VISWNTIISGYAQNGFASEAIEMYNIMEEEGEIAANQGTWVSVLPACSQ 381

Query: 432 SGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWN 491
           +G +++G+     +  + G+  +      L ++  + G  +  ++   ++P   +S  WN
Sbjct: 382 AGALRQGMKLHGRLLKN-GLYLDVFVVTSLADMYGKCGRLEDALSLFYQIP-RVNSVPWN 439

Query: 492 ALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEK 542
            L      HG+ +    +  +++D+  +    H    ++ SA     LV++
Sbjct: 440 TLIACHGFHGHGEKAVMLFKEMLDEGVKPD--HITFVTLLSACSHSGLVDE 488



 Score = 55.8 bits (133), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 48/172 (27%), Positives = 86/172 (50%), Gaps = 11/172 (6%)

Query: 15  LPNNCLIQSFLSLIS----KGQLSEAISSLDLLAQRG-IRLPAETLAFILQQCAESKSLK 69
           LPN  +I S+ ++IS     G  SEAI   +++ + G I     T   +L  C+++ +L+
Sbjct: 328 LPNTDVI-SWNTIISGYAQNGFASEAIEMYNIMEEEGEIAANQGTWVSVLPACSQAGALR 386

Query: 70  LGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGY 129
            G ++H  L L        F+   L  MY KCG   DA  +F +IP  N   +N +++ +
Sbjct: 387 QGMKLHGRL-LKNGLYLDVFVVTSLADMYGKCGRLEDALSLFYQIPRVNSVPWNTLIACH 445

Query: 130 ANLGMMKHARNLFDNMAERDV----VSWNTMIIGYAKSGAVEEGLKFYKVLR 177
              G  + A  LF  M +  V    +++ T++   + SG V+EG   +++++
Sbjct: 446 GFHGHGEKAVMLFKEMLDEGVKPDHITFVTLLSACSHSGLVDEGQWCFEMMQ 497


>gi|224145066|ref|XP_002325515.1| predicted protein [Populus trichocarpa]
 gi|222862390|gb|EEE99896.1| predicted protein [Populus trichocarpa]
          Length = 683

 Score =  288 bits (737), Expect = 7e-75,   Method: Compositional matrix adjust.
 Identities = 162/586 (27%), Positives = 302/586 (51%), Gaps = 42/586 (7%)

Query: 15  LPNNCLIQSFLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRV 74
           LP N LI S+   ++ G   EA+S+   +  +G+R    T   +L+ C E   L  G+ V
Sbjct: 108 LPWNLLISSY---VNNGLHGEALSAYREMVHKGVRPDNFTYPSVLKACGEKLDLDFGREV 164

Query: 75  HLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGM 134
           H  +          ++ N L+SMY K G    AR++F+++P ++  S+N ++S YA+ G+
Sbjct: 165 HESINAAYGHRWNLYVHNSLVSMYGKFGELDAARRLFNQMPERDAVSWNGIISNYASRGL 224

Query: 135 MKHARNLFDNM----AERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAG 190
            K A  LF+ M    AE ++++WNT+  G  ++   +  L+    +RR  I  +  +   
Sbjct: 225 WKEAFELFEEMRLAGAEVNIITWNTIAGGCVQTRNFKGALELLSQMRRCDIDLDPVAMII 284

Query: 191 ILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETD-AR 249
            L  C  +  +KL   +H   +                           R  FD  D  R
Sbjct: 285 GLGACSHIGAIKLGTVIHASAI---------------------------RSCFDGFDNVR 317

Query: 250 DVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMM 309
           + L     ++ Y++  D+  A  LF  +  K+  +W ++++GYT     ++A  LF  M+
Sbjct: 318 NAL-----ITMYSRCKDLRHADILFKSIKTKSLTTWNSMLSGYTHMDRSEEASFLFREML 372

Query: 310 ILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIR-TNFRSNTIVMSSLIDMYSKCGCL 368
              I PN  T +S L  CA + +L+ GK+ H +++R   F    ++ +SL++MY++ G +
Sbjct: 373 FSGIEPNYVTIASILPHCARVANLQQGKEFHCYIMRREGFEDYLLLWNSLVEMYARSGKV 432

Query: 369 NDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNA 428
              ++VFD +  + + + + ++I+     G  + A++LF +M++  +KPD++T+  +L+A
Sbjct: 433 LSAKRVFD-SLRRRDKVTYTSLIAGYGIQGEGKTALKLFDEMIKHRIKPDQVTMVAVLSA 491

Query: 429 CTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSY 488
           C+HSGLV EG   FE M+   GI+P  EH +C+++L  +AG  ++    +  MPY   + 
Sbjct: 492 CSHSGLVTEGNVLFEKMSTLYGIVPAVEHFSCMVDLFGRAGLLNKAKKVITSMPYRPTTA 551

Query: 489 LWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLIN 548
           +W  L G CRIHGN ++G    ++L++  P++   + L++++++A G+   + +VR  + 
Sbjct: 552 MWATLVGACRIHGNTEIGEWAAEKLLEMKPENPGYYVLIANMHAAAGRWSKLAEVRTYMR 611

Query: 549 ERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQM 594
           +   +K    +W+++ +    F V D+     + LY +LE L   M
Sbjct: 612 DLGVRKAPGCTWVDVGSGFSPFVVGDTSKHNSNDLYELLEGLTDLM 657



 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 146/550 (26%), Positives = 240/550 (43%), Gaps = 85/550 (15%)

Query: 20  LIQSFLSLISKGQLSEAISSLDLL------AQRGIRLPAETLAFILQQCAESKSLKLGKR 73
           L  S   L  KG L +A  +  L+      A R   L   +++ +L  C   KSL  GK+
Sbjct: 5   LFNSLKDLARKGHLLKAFETFSLIKLHASSANRDAIL--HSISSLLYSCTNLKSLPQGKQ 62

Query: 74  VHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLG 133
           +H H       T +    NHL+                  +P         +++ Y++  
Sbjct: 63  LHAH-------TISLGFENHLV-----------------LVP--------KLVTFYSSFS 90

Query: 134 MMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILT 193
           ++  A  +  N    + + WN +I  Y  +G   E L  Y+ +    +  + F++  +L 
Sbjct: 91  LLADAHTITVNSDIVNPLPWNLLISSYVNNGLHGEALSAYREMVHKGVRPDNFTYPSVLK 150

Query: 194 ICVKLEELKLTRQVHGQV-LVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVL 252
            C +  +L   R+VH  +    G   N+ + +S+V  Y K GEL  ARRLF++   RD +
Sbjct: 151 ACGEKLDLDFGREVHESINAAYGHRWNLYVHNSLVSMYGKFGELDAARRLFNQMPERDAV 210

Query: 253 TWTTMVSGYAKLGDMESASKLFNEM----PEKNPVSWTTLIAG--YTRNGLGQKALELFT 306
           +W  ++S YA  G  + A +LF EM     E N ++W T+  G   TRN  G  ALEL +
Sbjct: 211 SWNGIISNYASRGLWKEAFELFEEMRLAGAEVNIITWNTIAGGCVQTRNFKG--ALELLS 268

Query: 307 RMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCG 366
           +M    I  +       L AC+ I ++K G  +H   IR+ F     V ++LI MYS+C 
Sbjct: 269 QMRRCDIDLDPVAMIIGLGACSHIGAIKLGTVIHASAIRSCFDGFDNVRNALITMYSRCK 328

Query: 367 CLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVIL 426
            L     +F     K  +  WN+M+S  T     E+A  LF +M+ S ++P+ +T+A IL
Sbjct: 329 DLRHADILFKSIKTKSLTT-WNSMLSGYTHMDRSEEASFLFREMLFSGIEPNYVTIASIL 387

Query: 427 NACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHD 486
             C     +Q+G                +E H C I  + + G  D L+           
Sbjct: 388 PHCARVANLQQG----------------KEFH-CYI--MRREGFEDYLL----------- 417

Query: 487 SYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQL 546
             LWN+L  +    G +   ++V D L     +   T+  L + Y   G+G+   K+   
Sbjct: 418 --LWNSLVEMYARSGKVLSAKRVFDSL---RRRDKVTYTSLIAGYGIQGEGKTALKLFDE 472

Query: 547 INERQFKKEQ 556
           + + + K +Q
Sbjct: 473 MIKHRIKPDQ 482


>gi|15217514|ref|NP_177305.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169720|sp|Q9C9I6.1|PP116_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g71490
 gi|12323739|gb|AAG51835.1|AC016163_24 unknown protein; 40702-42747 [Arabidopsis thaliana]
 gi|56381899|gb|AAV85668.1| At1g71490 [Arabidopsis thaliana]
 gi|56790238|gb|AAW30036.1| At1g71490 [Arabidopsis thaliana]
 gi|332197086|gb|AEE35207.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 681

 Score =  288 bits (736), Expect = 7e-75,   Method: Compositional matrix adjust.
 Identities = 172/590 (29%), Positives = 310/590 (52%), Gaps = 43/590 (7%)

Query: 15  LPNNCLIQSFLSLISKGQL-SEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKR 73
           LP N LI S+    +K +L  E I++   +  +GIR  A T   +L+ C E+  +  G+ 
Sbjct: 110 LPWNVLIASY----AKNELFEEVIAAYKRMVSKGIRPDAFTYPSVLKACGETLDVAFGRV 165

Query: 74  VHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLG 133
           VH  ++++  K+ + ++ N LISMY +  +   AR++FD++  ++  S+N +++ YA+ G
Sbjct: 166 VHGSIEVSSYKS-SLYVCNALISMYKRFRNMGIARRLFDRMFERDAVSWNAVINCYASEG 224

Query: 134 MMKHARNLFDNM----AERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFA 189
           M   A  LFD M     E  V++WN +  G  ++G     L     +R F  S +  +  
Sbjct: 225 MWSEAFELFDKMWFSGVEVSVITWNIISGGCLQTGNYVGALGLISRMRNFPTSLDPVAMI 284

Query: 190 GILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDAR 249
             L  C  +  ++L +++HG  + + +     + ++++  Y+KC +L  A  +F +T+  
Sbjct: 285 IGLKACSLIGAIRLGKEIHGLAIHSSYDGIDNVRNTLITMYSKCKDLRHALIVFRQTEEN 344

Query: 250 DVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMM 309
            + TW +++SGYA+L   E AS L  EM          L+AG+                 
Sbjct: 345 SLCTWNSIISGYAQLNKSEEASHLLREM----------LVAGF----------------- 377

Query: 310 ILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTN-FRSNTIVMSSLIDMYSKCGCL 368
               +PN  T +S L  CA I +L+HGK+ H +++R   F+  T++ +SL+D+Y+K G +
Sbjct: 378 ----QPNSITLASILPLCARIANLQHGKEFHCYILRRKCFKDYTMLWNSLVDVYAKSGKI 433

Query: 369 NDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNA 428
              +QV DL  +K + + + ++I      G    A+ LF +M RS +KPD +T+  +L+A
Sbjct: 434 VAAKQVSDLM-SKRDEVTYTSLIDGYGNQGEGGVALALFKEMTRSGIKPDHVTVVAVLSA 492

Query: 429 CTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSY 488
           C+HS LV EG   F  M  + GI P  +H +C+++L  +AG   +  + +  MPY+    
Sbjct: 493 CSHSKLVHEGERLFMKMQCEYGIRPCLQHFSCMVDLYGRAGFLAKAKDIIHNMPYKPSGA 552

Query: 489 LWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLIN 548
            W  L   C IHGN  +G+   ++L++  P++   + L++++Y+A G    + +VR ++ 
Sbjct: 553 TWATLLNACHIHGNTQIGKWAAEKLLEMKPENPGYYVLIANMYAAAGSWSKLAEVRTIMR 612

Query: 549 ERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQMGEDA 598
           +   KK+   +WI+ ++    FSV D+  P     Y +L+ L   M ++A
Sbjct: 613 DLGVKKDPGCAWIDTDSGFSLFSVGDTSSPEACNTYPLLDGLNQLMKDNA 662



 Score =  148 bits (374), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 113/429 (26%), Positives = 196/429 (45%), Gaps = 44/429 (10%)

Query: 20  LIQSFLSLISKGQLSEAISSLDLLAQRGIRLPAETL-----AFILQQCAESKSLKLGKRV 74
           L +S   L S G L +A  +  LL  +     ++ L     A +L  C + ++   G +V
Sbjct: 6   LFKSLGHLASHGHLHDAFKTFSLLRLQSSSAVSDDLVLHSAASLLSACVDVRAFLAGVQV 65

Query: 75  HLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGM 134
           H H                         S V+   V   +P         +++ Y+   +
Sbjct: 66  HAHC----------------------ISSGVEYHSVL--VP--------KLVTFYSAFNL 93

Query: 135 MKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTI 194
              A+++ +N      + WN +I  YAK+   EE +  YK +    I  + F++  +L  
Sbjct: 94  HNEAQSIIENSDILHPLPWNVLIASYAKNELFEEVIAAYKRMVSKGIRPDAFTYPSVLKA 153

Query: 195 CVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTW 254
           C +  ++   R VHG + V+ + S++ + ++++  Y +   +  ARRLFD    RD ++W
Sbjct: 154 CGETLDVAFGRVVHGSIEVSSYKSSLYVCNALISMYKRFRNMGIARRLFDRMFERDAVSW 213

Query: 255 TTMVSGYAKLGDMESASKLFNEM----PEKNPVSWTTLIAGYTRNGLGQKALELFTRMMI 310
             +++ YA  G    A +LF++M     E + ++W  +  G  + G    AL L +RM  
Sbjct: 214 NAVINCYASEGMWSEAFELFDKMWFSGVEVSVITWNIISGGCLQTGNYVGALGLISRMRN 273

Query: 311 LRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLND 370
                +       L AC+ I +++ GK++HG  I +++     V ++LI MYSKC  L  
Sbjct: 274 FPTSLDPVAMIIGLKACSLIGAIRLGKEIHGLAIHSSYDGIDNVRNTLITMYSKCKDLRH 333

Query: 371 GRQVFDLTDNKENSML-WNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNAC 429
              VF  T+  ENS+  WN++IS   Q    E+A  L  +M+ +  +P+ ITLA IL  C
Sbjct: 334 ALIVFRQTE--ENSLCTWNSIISGYAQLNKSEEASHLLREMLVAGFQPNSITLASILPLC 391

Query: 430 THSGLVQEG 438
                +Q G
Sbjct: 392 ARIANLQHG 400


>gi|297824049|ref|XP_002879907.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297325746|gb|EFH56166.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 565

 Score =  288 bits (736), Expect = 7e-75,   Method: Compositional matrix adjust.
 Identities = 157/501 (31%), Positives = 269/501 (53%), Gaps = 33/501 (6%)

Query: 95  ISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWN 154
           +SMY K G    A  +++++  KN  S N +++GY   G +  AR +FD M +R + +WN
Sbjct: 1   MSMYSKLGDLPSAVALYERMRKKNFMSSNILINGYVRAGDLVSARKVFDEMPDRKLTTWN 60

Query: 155 TMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVT 214
            MI G  +    EEGL  ++ +     S +E++   + +    L  + + +Q+HG  +  
Sbjct: 61  AMIAGLIQFEYNEEGLSLFREMHGLGFSPDEYTLGSVFSGSAGLRSVSIGQQIHGYAIKY 120

Query: 215 GFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLF 274
           G   ++V++SS+   Y + G+L D                          G++     + 
Sbjct: 121 GLELDLVVNSSLAHMYMRNGKLQD--------------------------GEI-----VI 149

Query: 275 NEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLK 334
             MP +N V+W TLI G  +NG  +  L L+  M I   RPN+ TF + L +C+ +    
Sbjct: 150 RSMPVRNLVAWNTLIMGNAQNGCPETVLYLYKMMKISGCRPNKITFVTVLSSCSDLAIRG 209

Query: 335 HGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISAL 394
            G+Q+H   I+    S   V+SSLI MYSKCGCL D  + F   ++ E+ ++W++MISA 
Sbjct: 210 QGQQIHAEAIKIGASSVVAVVSSLISMYSKCGCLGDAAKAFSERED-EDEVMWSSMISAY 268

Query: 395 TQHGYDEQAIRLFHDMV-RSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIP 453
             HG  ++AI+LF+ M  ++ ++ +++    +L AC+HSGL  +GL  F+ M    G  P
Sbjct: 269 GFHGQGDEAIKLFNSMAEQTEMEVNEVAFLNLLYACSHSGLKDKGLELFDMMVEKYGFKP 328

Query: 454 NQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQL 513
             +H+ C+++LL +AGC DQ    ++ MP + D  +W  L   C IH N +M +KV  ++
Sbjct: 329 GLKHYTCVVDLLGRAGCLDQAEAIIKSMPIKPDPVIWKTLLSACNIHKNAEMAQKVFKEI 388

Query: 514 IDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVS 573
           ++ +P  SA + LL++++++  + R V +VR+ + ++  KKE  ISW E + +VH F + 
Sbjct: 389 LEIDPNDSACYVLLANVHASAKRWRDVSEVRKSMRDKNVKKEAGISWFEHKGEVHQFKMG 448

Query: 574 DSLHPMRDVLYSVLEQLAGQM 594
           D        +YS L++L  +M
Sbjct: 449 DRSQSKSKEIYSYLKELTLEM 469



 Score =  115 bits (288), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 92/378 (24%), Positives = 163/378 (43%), Gaps = 73/378 (19%)

Query: 54  TLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDK 113
           TL  +    A  +S+ +G+++H +  +         +++ L  MY + G   D   V   
Sbjct: 93  TLGSVFSGSAGLRSVSIGQQIHGY-AIKYGLELDLVVNSSLAHMYMRNGKLQDGEIVIRS 151

Query: 114 IPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFY 173
           +PV+NL                                +WNT+I+G A++G  E  L  Y
Sbjct: 152 MPVRNLV-------------------------------AWNTLIMGNAQNGCPETVLYLY 180

Query: 174 KVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKC 233
           K+++      N+ +F  +L+ C  L      +Q+H + +  G  S V + SS++  Y+KC
Sbjct: 181 KMMKISGCRPNKITFVTVLSSCSDLAIRGQGQQIHAEAIKIGASSVVAVVSSLISMYSKC 240

Query: 234 GELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEK-----NPVSWTTL 288
           G L DA + F E +  D + W++M+S Y   G  + A KLFN M E+     N V++  L
Sbjct: 241 GCLGDAAKAFSEREDEDEVMWSSMISAYGFHGQGDEAIKLFNSMAEQTEMEVNEVAFLNL 300

Query: 289 IAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNF 348
           +   + +GL  K LELF  M+       ++ F            LKH             
Sbjct: 301 LYACSHSGLKDKGLELFDMMV------EKYGFKP---------GLKH------------- 332

Query: 349 RSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFH 408
                  + ++D+  + GCL+    +      K + ++W T++SA   H   E A ++F 
Sbjct: 333 ------YTCVVDLLGRAGCLDQAEAIIKSMPIKPDPVIWKTLLSACNIHKNAEMAQKVFK 386

Query: 409 DMVRSSVKPDKITLAVIL 426
           +++   + P+     V+L
Sbjct: 387 EILE--IDPNDSACYVLL 402



 Score = 50.1 bits (118), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 53/242 (21%), Positives = 98/242 (40%), Gaps = 41/242 (16%)

Query: 47  GIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVD 106
           G R    T   +L  C++      G+++H    +    +    + + LISMY KCG   D
Sbjct: 187 GCRPNKITFVTVLSSCSDLAIRGQGQQIHAE-AIKIGASSVVAVVSSLISMYSKCGCLGD 245

Query: 107 ARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAER-----DVVSWNTMIIGYA 161
           A K F +   ++   +++M+S Y   G    A  LF++MAE+     + V++  ++   +
Sbjct: 246 AAKAFSEREDEDEVMWSSMISAYGFHGQGDEAIKLFNSMAEQTEMEVNEVAFLNLLYACS 305

Query: 162 KSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVV 221
            SG  ++GL+ + ++                                  V   GF   + 
Sbjct: 306 HSGLKDKGLELFDMM----------------------------------VEKYGFKPGLK 331

Query: 222 ISSSIVDAYAKCGELSDARRLFDETDAR-DVLTWTTMVSGYAKLGDMESASKLFNEMPEK 280
             + +VD   + G L  A  +      + D + W T++S      + E A K+F E+ E 
Sbjct: 332 HYTCVVDLLGRAGCLDQAEAIIKSMPIKPDPVIWKTLLSACNIHKNAEMAQKVFKEILEI 391

Query: 281 NP 282
           +P
Sbjct: 392 DP 393


>gi|255539585|ref|XP_002510857.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223549972|gb|EEF51459.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 641

 Score =  288 bits (736), Expect = 7e-75,   Method: Compositional matrix adjust.
 Identities = 145/446 (32%), Positives = 258/446 (57%), Gaps = 3/446 (0%)

Query: 119 LFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRR 178
           LF  N+++  Y   G + +A+ +FD M +RD+VSWN++I GY++    +E L  + ++R 
Sbjct: 192 LFIENSLIRMYGYFGELGYAQKVFDKMDDRDLVSWNSLICGYSQCNRFKEVLDLFNLMRE 251

Query: 179 FSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSD 238
            +++ +  +   ++  C  L E  +   +   +       +V + +S++D Y + G +  
Sbjct: 252 ANVTADSVTMVKVILACSYLCEDGVVDSMVKYIEDKHVDIDVYLGNSLIDMYGRRGLVDL 311

Query: 239 ARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLG 298
           ARR+FD    +++++W  M++GYA  GD+ +A KLFNEMP +N +SWT +I+G  +    
Sbjct: 312 ARRVFDRMQEKNIVSWNAMLTGYATAGDLVAAKKLFNEMPIRNVISWTCMISGCAQANQC 371

Query: 299 QKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSL 358
             AL+LF  MM   ++P++ T SS L AC+ +  L  G+ VH ++ R + +S+  V ++L
Sbjct: 372 SDALKLFQEMMDANVKPDEITVSSVLSACSHLGLLDTGQTVHEYMCRHDIKSDVYVGNAL 431

Query: 359 IDMYSKCGCLNDGRQVF-DLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKP 417
           IDMY KCG ++   +VF D+   K++S+ W +MI  L  +G+ +    LF  M+R  ++P
Sbjct: 432 IDMYCKCGVVDKALEVFHDM--KKKDSVSWTSMILGLAVNGFVDNVFELFSQMLRDGLQP 489

Query: 418 DKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQ 477
              +   IL ACTH+GLV +GL YFESM H  G+ P  +H+ C+++LL+++G  D+    
Sbjct: 490 THGSFIGILLACTHAGLVDKGLEYFESMEHVYGLRPEMKHYGCVVDLLSRSGELDRAYEF 549

Query: 478 LEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKG 537
           +++MP   D  LW  L   C++H N+ +      +L++ +P +S  + LLS+ Y+   + 
Sbjct: 550 IKQMPVVPDVVLWRILLSACKLHRNLVLAEIATSKLLELDPSNSGNYVLLSNTYAGSDRW 609

Query: 538 RLVEKVRQLINERQFKKEQAISWIEI 563
               ++R L+     +K  + S IE+
Sbjct: 610 DDASRMRDLMVVGDVQKPSSWSSIEV 635



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 74/233 (31%), Positives = 127/233 (54%), Gaps = 5/233 (2%)

Query: 88  TFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAE 147
            +L N LI MY + G    AR+VFD++  KN+ S+N ML+GYA  G +  A+ LF+ M  
Sbjct: 293 VYLGNSLIDMYGRRGLVDLARRVFDRMQEKNIVSWNAMLTGYATAGDLVAAKKLFNEMPI 352

Query: 148 RDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQV 207
           R+V+SW  MI G A++    + LK ++ +   ++  +E + + +L+ C  L  L   + V
Sbjct: 353 RNVISWTCMISGCAQANQCSDALKLFQEMMDANVKPDEITVSSVLSACSHLGLLDTGQTV 412

Query: 208 HGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDM 267
           H  +      S+V + ++++D Y KCG +  A  +F +   +D ++WT+M+ G A  G +
Sbjct: 413 HEYMCRHDIKSDVYVGNALIDMYCKCGVVDKALEVFHDMKKKDSVSWTSMILGLAVNGFV 472

Query: 268 ESASKLFNEMPEK--NPV--SWTTLIAGYTRNGLGQKALELFTRM-MILRIRP 315
           ++  +LF++M      P   S+  ++   T  GL  K LE F  M  +  +RP
Sbjct: 473 DNVFELFSQMLRDGLQPTHGSFIGILLACTHAGLVDKGLEYFESMEHVYGLRP 525



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 111/459 (24%), Positives = 200/459 (43%), Gaps = 69/459 (15%)

Query: 117 KNLFSYNNMLSGYA-NLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYK- 174
           KN  S +N++  YA +   +  A   F  + +  ++ +N +I G ++S    E +  Y  
Sbjct: 87  KNPKSMSNVIKSYALSRSHLNKANFAFIQIGQPTLLIFNYLIRGLSQSENPNEAIVMYSD 146

Query: 175 VLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCG 234
           ++    I  +  +F  +   C +++++   +  H QVL  GF S + I +S++  Y   G
Sbjct: 147 LMYNQGILGDNLTFIYLFKACSRVKDVLHGQVFHVQVLKLGFGSYLFIENSLIRMYGYFG 206

Query: 235 ELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTR 294
           EL  A+++FD+ D RD+++W +++ GY++    +    LFN M E N             
Sbjct: 207 ELGYAQKVFDKMDDRDLVSWNSLICGYSQCNRFKEVLDLFNLMREAN------------- 253

Query: 295 NGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIV 354
                             +  +  T    + AC+ +        +  ++   +   +  +
Sbjct: 254 ------------------VTADSVTMVKVILACSYLCEDGVVDSMVKYIEDKHVDIDVYL 295

Query: 355 MSSLIDMYSKCGCLNDGRQVFDLTDNKE----NSML------------------------ 386
            +SLIDMY + G ++  R+VFD    K     N+ML                        
Sbjct: 296 GNSLIDMYGRRGLVDLARRVFDRMQEKNIVSWNAMLTGYATAGDLVAAKKLFNEMPIRNV 355

Query: 387 --WNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFES 444
             W  MIS   Q      A++LF +M+ ++VKPD+IT++ +L+AC+H GL+  G T  E 
Sbjct: 356 ISWTCMISGCAQANQCSDALKLFQEMMDANVKPDEITVSSVLSACSHLGLLDTGQTVHEY 415

Query: 445 MT-HDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNI 503
           M  HD  I  +      LI++  + G  D+ +     M  + DS  W ++     ++G +
Sbjct: 416 MCRHD--IKSDVYVGNALIDMYCKCGVVDKALEVFHDMK-KKDSVSWTSMILGLAVNGFV 472

Query: 504 DMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEK 542
           D   ++  Q++    Q   THG    I  A     LV+K
Sbjct: 473 DNVFELFSQMLRDGLQ--PTHGSFIGILLACTHAGLVDK 509



 Score = 44.7 bits (104), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 39/145 (26%), Positives = 65/145 (44%), Gaps = 3/145 (2%)

Query: 299 QKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSL 358
           Q+AL++  R  I R+  +  T   C     S  S+K  K+ H  LIRT+   N   MS++
Sbjct: 36  QQALQMKLRRPISRLFTSSSTTRKCQQIIKSGFSIKSIKEQHAHLIRTHHHKNPKSMSNV 95

Query: 359 IDMYSKCGC-LNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHD-MVRSSVK 416
           I  Y+     LN     F +   +   +++N +I  L+Q     +AI ++ D M    + 
Sbjct: 96  IKSYALSRSHLNKANFAF-IQIGQPTLLIFNYLIRGLSQSENPNEAIVMYSDLMYNQGIL 154

Query: 417 PDKITLAVILNACTHSGLVQEGLTY 441
            D +T   +  AC+    V  G  +
Sbjct: 155 GDNLTFIYLFKACSRVKDVLHGQVF 179


>gi|449447569|ref|XP_004141540.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g71490-like [Cucumis sativus]
 gi|449481506|ref|XP_004156203.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g71490-like [Cucumis sativus]
          Length = 712

 Score =  288 bits (736), Expect = 8e-75,   Method: Compositional matrix adjust.
 Identities = 167/586 (28%), Positives = 310/586 (52%), Gaps = 52/586 (8%)

Query: 18  NCLIQSFLSLISKGQLSEA-ISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHL 76
           N LI S++    K +L EA I +   +  +G+R    T   IL+ C E+++LK G  VH 
Sbjct: 149 NILITSYV----KHKLYEAAILAYKQMVSKGVRPDNFTFPSILKACGETQNLKFGLEVHK 204

Query: 77  HLKLTQRKTP-TTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMM 135
              +    TP + F+ N LISMY +CG    AR +FD +  ++  S+N+M+S Y++ GM 
Sbjct: 205 --SINSWSTPWSLFVHNALISMYGRCGEVDTARNLFDNMLERDAVSWNSMISCYSSRGMW 262

Query: 136 KHARNLFDNMA----ERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGI 191
           + A  LF++M     E +VV+WN +  G  + G   + LK    +R F I  ++ +    
Sbjct: 263 REAFELFESMQSKCLEINVVTWNIIAGGCLRVGNFTQALKLLSQMRNFGIHLDDVAMIIG 322

Query: 192 LTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDV 251
           L  C  +  ++L +++HG  +         + +++V  YA+C                  
Sbjct: 323 LGACSHIGAIRLGKEIHGFTIRHYHHMLSTVQNALVTMYARCK----------------- 365

Query: 252 LTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMIL 311
                         D+  A  LF    +K+ ++W ++++G T  G  ++AL LF  +++ 
Sbjct: 366 --------------DIRHAYMLFRLNDDKSRITWNSMLSGLTHLGRVEEALCLFRELLLF 411

Query: 312 RIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIR-TNFRSNTIVMSSLIDMYSKCGCLND 370
            + P+  TF+S L  CA +  L+HG++ H ++ +  +FR + ++ ++L+DMY++ G +++
Sbjct: 412 GVEPDYVTFASILPLCARVADLQHGREFHCYITKHRDFRDHLLLWNALVDMYARAGKVSE 471

Query: 371 GRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACT 430
            +++F  + +K++ + + ++I+     G   +A+RLF +M R  +KPD IT+  +L+AC+
Sbjct: 472 AKRIF-YSLSKKDEVTYTSLIAGYGMQGEGGKAVRLFEEMKRFQIKPDHITMIAVLSACS 530

Query: 431 HSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLW 490
           HSGLV +    F  M    G+ P  EH+AC+ +L  + G  ++    + +MPY   S +W
Sbjct: 531 HSGLVNQAELLFAEMQSVHGLSPRLEHYACMADLFGRVGLLNKAKEIITRMPYRPTSAIW 590

Query: 491 NALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINER 550
             L G C IHGN+D+G    ++L++  P+ S  + L++++Y+A G    + ++R L+ + 
Sbjct: 591 ATLIGACCIHGNMDIGEWAAEKLLEMRPEHSGYYVLIANMYAAAGSWSKLAEIRTLMRDS 650

Query: 551 QFKKEQAISWIEIENKVHAFSVSDSLHP-------MRDVLYSVLEQ 589
              K    SW+++ ++  +FSV D+  P       + D LY V++ 
Sbjct: 651 GVAKIPGCSWVDVGSEFISFSVGDTSSPQALESKLLLDSLYDVMKH 696



 Score =  174 bits (442), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 130/483 (26%), Positives = 224/483 (46%), Gaps = 52/483 (10%)

Query: 4   NFSPRGINRKNLP----NNCLIQSFLS----LISKGQLSEAISSLDLLAQR-----GIRL 50
            F P+  + KNLP    +  +I S  S      S GQLS++  +  L+  R        L
Sbjct: 20  TFIPK--SWKNLPVSNSSEFMIGSIFSSLKDFASHGQLSKSFEAFSLIQLRTSYNDSFDL 77

Query: 51  PAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKV 110
             ++++ +L  C +S SL  GK++H H+           +S+ L                
Sbjct: 78  ILQSISILLVSCTKSSSLPPGKQLHGHI-----------ISSGL---------------- 110

Query: 111 FDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGL 170
                V++ F  + ++  Y++L  +  A  L +        SWN +I  Y K    E  +
Sbjct: 111 -----VEDSFLVSKLVMFYSSLEFLPEAHTLVETSNLFRPCSWNILITSYVKHKLYEAAI 165

Query: 171 KFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAY 230
             YK +    +  + F+F  IL  C + + LK   +VH  +       ++ + ++++  Y
Sbjct: 166 LAYKQMVSKGVRPDNFTFPSILKACGETQNLKFGLEVHKSINSWSTPWSLFVHNALISMY 225

Query: 231 AKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEK----NPVSWT 286
            +CGE+  AR LFD    RD ++W +M+S Y+  G    A +LF  M  K    N V+W 
Sbjct: 226 GRCGEVDTARNLFDNMLERDAVSWNSMISCYSSRGMWREAFELFESMQSKCLEINVVTWN 285

Query: 287 TLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRT 346
            +  G  R G   +AL+L ++M    I  +       L AC+ I +++ GK++HGF IR 
Sbjct: 286 IIAGGCLRVGNFTQALKLLSQMRNFGIHLDDVAMIIGLGACSHIGAIRLGKEIHGFTIRH 345

Query: 347 NFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRL 406
                + V ++L+ MY++C  +     +F L D+K + + WN+M+S LT  G  E+A+ L
Sbjct: 346 YHHMLSTVQNALVTMYARCKDIRHAYMLFRLNDDK-SRITWNSMLSGLTHLGRVEEALCL 404

Query: 407 FHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLA 466
           F +++   V+PD +T A IL  C     +Q G  +   +T       +      L+++ A
Sbjct: 405 FRELLLFGVEPDYVTFASILPLCARVADLQHGREFHCYITKHRDFRDHLLLWNALVDMYA 464

Query: 467 QAG 469
           +AG
Sbjct: 465 RAG 467


>gi|225442928|ref|XP_002265258.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39680-like [Vitis vinifera]
          Length = 703

 Score =  288 bits (736), Expect = 8e-75,   Method: Compositional matrix adjust.
 Identities = 183/621 (29%), Positives = 291/621 (46%), Gaps = 104/621 (16%)

Query: 42  LLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLS-NHLISMYFK 100
           LL    +  P E    +L+  A++K+LK GK +H HL +T + T    +  N LI++Y K
Sbjct: 15  LLKSSTVGHPLEHTIQLLKVSADTKNLKFGKMIHAHLIITNQATKDNIVQVNSLINLYAK 74

Query: 101 CGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGY 160
           C          D+I V                     AR LFD M +R+VVSW  ++ GY
Sbjct: 75  C----------DQIMV---------------------ARILFDGMRKRNVVSWGALMAGY 103

Query: 161 AKSGAVEEGLKFYKVLRRFS-ISCNEFSFAGILTICVKLEELKLTRQVHG---------- 209
             +G V E L+ +K +     +  NE+ FA I++ C    ++    Q HG          
Sbjct: 104 FHNGLVLEVLRLFKTMISVDYMRPNEYIFATIISSCSDSGQVVEGWQCHGYALKSGLVFH 163

Query: 210 -----------------------------------QVLVTGFLSNVVISSSI-------- 226
                                               +++ G L N   S ++        
Sbjct: 164 QYVKNALICMYSRRSDVKGAMSVWYEVPGLDVFSYNIIINGLLENGYPSEALEVLDRMVD 223

Query: 227 ----------VDAYAKCGELSDAR-------RLFDETDARDVLTWTTMVSGYAKLGDMES 269
                     V A+  C  L D R       R+F      D    + ++  Y K G++ +
Sbjct: 224 ECIVWDNVTYVTAFGLCSHLKDLRLGLQVHCRMFRTGAEYDSFVSSAIIDMYGKCGNILN 283

Query: 270 ASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACAS 329
           A K+FN +  KN VSWT ++A Y++NG  ++AL  F  M +  + PN++TF+  L +CA 
Sbjct: 284 ARKVFNRLQTKNVVSWTAILAAYSQNGCFEEALNFFPEMEVDGLLPNEYTFAVLLNSCAG 343

Query: 330 IVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNT 389
           I +L HGK +H  + ++ F  + IV ++LI+MYSK G +    +VF L     +S+ W+ 
Sbjct: 344 ISALGHGKLLHTRIKKSGFEDHIIVGNALINMYSKSGSIEAAHKVF-LEMICRDSITWSA 402

Query: 390 MISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDL 449
           MI  L+ HG   +A+ +F +M+ +   P  +T   +L+AC H G VQEG  Y   +    
Sbjct: 403 MICGLSHHGLGREALVVFQEMLAAKECPHYVTFVGVLSACAHLGSVQEGFYYLNQLMKQT 462

Query: 450 GIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKV 509
           GI P  EH+ C++ LL +AG  D+  N ++  P + D   W  L   C +H N  +G+KV
Sbjct: 463 GIEPGVEHYTCIVGLLCKAGRLDEAENFMKSTPVKWDVVAWRTLLSACHVHQNYGLGKKV 522

Query: 510 VDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHA 569
            + ++  +P    T+ LLS++Y+   +   V K+R+L+ ER  KKE   SWIEI N +H 
Sbjct: 523 AELVLQMDPGDVGTYILLSNMYAKAKRWDGVVKIRKLMRERNVKKEPGASWIEIRNSIHV 582

Query: 570 FSVSDSLHPMRDVLYSVLEQL 590
           F      HP  + +Y  +++L
Sbjct: 583 FVSEGKTHPESNQIYEKVQEL 603



 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 90/372 (24%), Positives = 167/372 (44%), Gaps = 64/372 (17%)

Query: 27  LISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTP 86
           L+  G  SEA+  LD +    I     T       C+  K L+LG +VH  +  T  +  
Sbjct: 205 LLENGYPSEALEVLDRMVDECIVWDNVTYVTAFGLCSHLKDLRLGLQVHCRMFRTGAEY- 263

Query: 87  TTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMA 146
            +F+S+ +I MY KCG+ ++ARKVF+++  KN+ S+  +L+ Y                 
Sbjct: 264 DSFVSSAIIDMYGKCGNILNARKVFNRLQTKNVVSWTAILAAY----------------- 306

Query: 147 ERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQ 206
                         +++G  EE L F+  +    +  NE++FA +L  C  +  L   + 
Sbjct: 307 --------------SQNGCFEEALNFFPEMEVDGLLPNEYTFAVLLNSCAGISALGHGKL 352

Query: 207 VHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGD 266
           +H ++  +GF  ++++ +++++ Y+K G +  A ++F E   RD +TW+ M         
Sbjct: 353 LHTRIKKSGFEDHIIVGNALINMYSKSGSIEAAHKVFLEMICRDSITWSAM--------- 403

Query: 267 MESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCA 326
                                 I G + +GLG++AL +F  M+  +  P+  TF   L A
Sbjct: 404 ----------------------ICGLSHHGLGREALVVFQEMLAAKECPHYVTFVGVLSA 441

Query: 327 CASIVSLKHG-KQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSM 385
           CA + S++ G   ++  + +T         + ++ +  K G L++       T  K + +
Sbjct: 442 CAHLGSVQEGFYYLNQLMKQTGIEPGVEHYTCIVGLLCKAGRLDEAENFMKSTPVKWDVV 501

Query: 386 LWNTMISALTQH 397
            W T++SA   H
Sbjct: 502 AWRTLLSACHVH 513



 Score = 54.7 bits (130), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 64/255 (25%), Positives = 107/255 (41%), Gaps = 39/255 (15%)

Query: 11  NRKNLPNNCLIQSFLSLISK-GQLSEAISSLDLLAQRGIRLPAE-TLAFILQQCAESKSL 68
           NR    N     + L+  S+ G   EA++    +   G+ LP E T A +L  CA   +L
Sbjct: 289 NRLQTKNVVSWTAILAAYSQNGCFEEALNFFPEMEVDGL-LPNEYTFAVLLNSCAGISAL 347

Query: 69  KLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSG 128
             GK +H  +K +  +     + N LI+MY K GS   A KVF ++  ++  +++ M+ G
Sbjct: 348 GHGKLLHTRIKKSGFED-HIIVGNALINMYSKSGSIEAAHKVFLEMICRDSITWSAMICG 406

Query: 129 YANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEF-S 187
            ++ G+ + A  +F  M                   A +E              C  + +
Sbjct: 407 LSHHGLGREALVVFQEML------------------AAKE--------------CPHYVT 434

Query: 188 FAGILTICVKLEELKLTRQVHGQVLV-TGFLSNVVISSSIVDAYAKCGELSDARRLFDET 246
           F G+L+ C  L  ++       Q++  TG    V   + IV    K G L +A      T
Sbjct: 435 FVGVLSACAHLGSVQEGFYYLNQLMKQTGIEPGVEHYTCIVGLLCKAGRLDEAENFMKST 494

Query: 247 DAR-DVLTWTTMVSG 260
             + DV+ W T++S 
Sbjct: 495 PVKWDVVAWRTLLSA 509


>gi|297811443|ref|XP_002873605.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297319442|gb|EFH49864.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 750

 Score =  288 bits (736), Expect = 8e-75,   Method: Compositional matrix adjust.
 Identities = 159/568 (27%), Positives = 274/568 (48%), Gaps = 63/568 (11%)

Query: 30  KGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTF 89
           +G L +A+     + + G + P+     +L+     ++L +G+++H H+ +         
Sbjct: 160 QGLLDKAVGLFSRMLESGDKPPSSMYTTLLKSLVNPRALDIGRQIHAHV-IRAGLCSNAS 218

Query: 90  LSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERD 149
           +   +++MY KCG  V A++V                               FD MA + 
Sbjct: 219 IETGIVNMYVKCGWLVGAKRV-------------------------------FDQMAVKK 247

Query: 150 VVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHG 209
            V+W  +++GY ++G   + LK +  L    +  + F F+ +L  C  LEEL+  +Q+H 
Sbjct: 248 PVAWTGLMVGYTQAGRARDALKLFVDLITEGVEWDSFVFSVVLKACASLEELRFGKQIHA 307

Query: 210 QVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMES 269
            V   G    V + + +VD Y KC     A R F E    + ++W+ ++SGY ++   E 
Sbjct: 308 CVAKLGLECEVSVGTPLVDFYIKCSSFESACRAFQEIREPNDVSWSAIISGYCQMSQFEE 367

Query: 270 ASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACAS 329
           A K F  +  KN V                          +L    N  T++S   AC+ 
Sbjct: 368 AVKTFKSLRSKNAV--------------------------VL----NSFTYTSIFQACSV 397

Query: 330 IVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNT 389
           +     G QVH   I+ +   +    S+LI MYSKCGCL+D  +VF+  DN  + + W  
Sbjct: 398 LADCNIGGQVHADAIKRSLIGSQYGESALITMYSKCGCLDDAHEVFESMDNP-DIVAWTA 456

Query: 390 MISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDL 449
            IS    +G   +A+RLF  MV   +KP+ +T   +L AC+H+GLV++G  Y ++M    
Sbjct: 457 FISGHAYYGNASEALRLFEKMVSCGMKPNSVTFIAVLTACSHAGLVEQGKHYLDTMLRKY 516

Query: 450 GIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKV 509
            + P  +H+ C+I++ A++G  D+ +  ++ MP+E D+  W      C  H N+++G+  
Sbjct: 517 NVAPTIDHYDCMIDIYARSGLLDEALRFMKNMPFEPDAMSWKCFLSGCWTHKNLELGKIA 576

Query: 510 VDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHA 569
            ++L   +P+ +A + L  ++Y+  GK     +V +L+NER  KKE + SWI+ + K+H 
Sbjct: 577 GEELRQLDPEDTAGYVLPFNLYTWAGKWEEAAEVMKLMNERMLKKELSCSWIQEKGKIHR 636

Query: 570 FSVSDSLHPMRDVLYSVLEQLAGQMGED 597
           F V D  HP    +Y  L++  G M  D
Sbjct: 637 FIVGDKHHPQSQEIYEKLKEFDGFMEGD 664



 Score =  155 bits (392), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 125/535 (23%), Positives = 222/535 (41%), Gaps = 87/535 (16%)

Query: 24  FLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQR 83
            +SL   G+L+EA      + + G+ +   +   + + C E +SL  G+ +H  +++   
Sbjct: 53  LVSLSKHGKLNEAFEFFQEMDKAGVSVSLYSYQCLFEACRELRSLSHGRLLHNRMRMGI- 111

Query: 84  KTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFD 143
           + P+  L N ++ MY +CGS  DA K+FD++   N  S   M+S YA  G++  A  LF 
Sbjct: 112 ENPSVLLQNCVLQMYCECGSLEDADKLFDEMSDLNAVSRTTMISAYAEQGLLDKAVGLFS 171

Query: 144 NMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKL 203
            M E      ++M                               +  +L   V    L +
Sbjct: 172 RMLESGDKPPSSM-------------------------------YTTLLKSLVNPRALDI 200

Query: 204 TRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAK 263
            RQ+H  V+  G  SN  I + IV+ Y KCG L  A+R+FD+   +  + WT ++ GY +
Sbjct: 201 GRQIHAHVIRAGLCSNASIETGIVNMYVKCGWLVGAKRVFDQMAVKKPVAWTGLMVGYTQ 260

Query: 264 LGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSC 323
            G    A KLF ++  +  V W + +                              FS  
Sbjct: 261 AGRARDALKLFVDLITEG-VEWDSFV------------------------------FSVV 289

Query: 324 LCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKEN 383
           L ACAS+  L+ GKQ+H  + +        V + L+D Y KC       + F     + N
Sbjct: 290 LKACASLEELRFGKQIHACVAKLGLECEVSVGTPLVDFYIKCSSFESACRAFQEI-REPN 348

Query: 384 SMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQE------ 437
            + W+ +IS   Q    E+A++ F  +   +        AV+LN+ T++ + Q       
Sbjct: 349 DVSWSAIISGYCQMSQFEEAVKTFKSLRSKN--------AVVLNSFTYTSIFQACSVLAD 400

Query: 438 ----GLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNAL 493
               G  + +++   L  I +Q   + LI + ++ GC D      E M    D   W A 
Sbjct: 401 CNIGGQVHADAIKRSL--IGSQYGESALITMYSKCGCLDDAHEVFESMD-NPDIVAWTAF 457

Query: 494 HGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLIN 548
                 +GN     ++ ++++    + ++      ++ +A     LVE+ +  ++
Sbjct: 458 ISGHAYYGNASEALRLFEKMVSCGMKPNSV--TFIAVLTACSHAGLVEQGKHYLD 510



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 69/277 (24%), Positives = 132/277 (47%), Gaps = 32/277 (11%)

Query: 154 NTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLV 213
           N  ++  +K G + E  +F++ + +  +S + +S+  +   C +L  L   R +H ++ +
Sbjct: 50  NLHLVSLSKHGKLNEAFEFFQEMDKAGVSVSLYSYQCLFEACRELRSLSHGRLLHNRMRM 109

Query: 214 TGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKL 273
                +V++ + ++  Y +CG L DA +LFDE    + ++ TTM+S YA+ G ++ A  L
Sbjct: 110 GIENPSVLLQNCVLQMYCECGSLEDADKLFDEMSDLNAVSRTTMISAYAEQGLLDKAVGL 169

Query: 274 FNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSL 333
           F+ M E                                  +P    +++ L +  +  +L
Sbjct: 170 FSRMLESGD-------------------------------KPPSSMYTTLLKSLVNPRAL 198

Query: 334 KHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISA 393
             G+Q+H  +IR    SN  + + +++MY KCG L   ++VFD    K+  + W  ++  
Sbjct: 199 DIGRQIHAHVIRAGLCSNASIETGIVNMYVKCGWLVGAKRVFDQMAVKK-PVAWTGLMVG 257

Query: 394 LTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACT 430
            TQ G    A++LF D++   V+ D    +V+L AC 
Sbjct: 258 YTQAGRARDALKLFVDLITEGVEWDSFVFSVVLKACA 294


  Database: nr
    Posted date:  Mar 3, 2013 10:45 PM
  Number of letters in database: 999,999,864
  Number of sequences in database:  2,912,245
  
  Database: /local_scratch/syshi//blastdatabase/nr.01
    Posted date:  Mar 3, 2013 10:52 PM
  Number of letters in database: 999,999,666
  Number of sequences in database:  2,912,720
  
  Database: /local_scratch/syshi//blastdatabase/nr.02
    Posted date:  Mar 3, 2013 10:58 PM
  Number of letters in database: 999,999,938
  Number of sequences in database:  3,014,250
  
  Database: /local_scratch/syshi//blastdatabase/nr.03
    Posted date:  Mar 3, 2013 11:03 PM
  Number of letters in database: 999,999,780
  Number of sequences in database:  2,805,020
  
  Database: /local_scratch/syshi//blastdatabase/nr.04
    Posted date:  Mar 3, 2013 11:08 PM
  Number of letters in database: 999,999,551
  Number of sequences in database:  2,816,253
  
  Database: /local_scratch/syshi//blastdatabase/nr.05
    Posted date:  Mar 3, 2013 11:13 PM
  Number of letters in database: 999,999,897
  Number of sequences in database:  2,981,387
  
  Database: /local_scratch/syshi//blastdatabase/nr.06
    Posted date:  Mar 3, 2013 11:18 PM
  Number of letters in database: 999,999,649
  Number of sequences in database:  2,911,476
  
  Database: /local_scratch/syshi//blastdatabase/nr.07
    Posted date:  Mar 3, 2013 11:24 PM
  Number of letters in database: 999,999,452
  Number of sequences in database:  2,920,260
  
  Database: /local_scratch/syshi//blastdatabase/nr.08
    Posted date:  Mar 3, 2013 11:25 PM
  Number of letters in database: 64,230,274
  Number of sequences in database:  189,558
  
Lambda     K      H
   0.321    0.134    0.395 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,905,909,588
Number of Sequences: 23463169
Number of extensions: 347766951
Number of successful extensions: 1044916
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 8579
Number of HSP's successfully gapped in prelim test: 3155
Number of HSP's that attempted gapping in prelim test: 835613
Number of HSP's gapped (non-prelim): 64540
length of query: 605
length of database: 8,064,228,071
effective HSP length: 149
effective length of query: 456
effective length of database: 8,863,183,186
effective search space: 4041611532816
effective search space used: 4041611532816
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 80 (35.4 bits)