BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 007400
(605 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3OIC|A Chain A, Crystal Structure Of Enoyl-Acp Reductases Iii (Fabl) From
B. Subtilis (Apo Form)
pdb|3OIC|D Chain D, Crystal Structure Of Enoyl-Acp Reductases Iii (Fabl) From
B. Subtilis (Apo Form)
pdb|3OID|A Chain A, Crystal Structure Of Enoyl-Acp Reductases Iii (Fabl) From
B. Subtilis (Complex With Nadp And Tcl)
pdb|3OID|B Chain B, Crystal Structure Of Enoyl-Acp Reductases Iii (Fabl) From
B. Subtilis (Complex With Nadp And Tcl)
pdb|3OID|C Chain C, Crystal Structure Of Enoyl-Acp Reductases Iii (Fabl) From
B. Subtilis (Complex With Nadp And Tcl)
pdb|3OID|D Chain D, Crystal Structure Of Enoyl-Acp Reductases Iii (Fabl) From
B. Subtilis (Complex With Nadp And Tcl)
Length = 258
Score = 32.3 bits (72), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 40/87 (45%), Gaps = 5/87 (5%)
Query: 254 WTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTL-----IAGYTRNGLGQKALELFTRM 308
WT ++ A L + A+KL + + VS ++L + YT G+ + ALE TR
Sbjct: 108 WTMNINAKALLFCAQEAAKLMEKNGGGHIVSISSLGSIRYLENYTTVGVSKAALEALTRY 167
Query: 309 MILRIRPNQHTFSSCLCACASIVSLKH 335
+ + + P Q ++ +LKH
Sbjct: 168 LAVELSPKQIIVNAVSGGAIDTDALKH 194
>pdb|2WZR|1 Chain 1, The Structure Of Foot And Mouth Disease Virus Serotype
Sat1
Length = 219
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 338 QVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSML 386
HG RT R++T V + L+D ++ G ND + V DL KE S++
Sbjct: 16 SAHGGDTRTTRRAHTDV-TFLLDRFTLVGKTNDNKLVLDLLSTKEKSLV 63
>pdb|3I5T|A Chain A, Crystal Structure Of Aminotransferase Prk07036 From
Rhodobacter Sphaeroides Kd131
pdb|3I5T|B Chain B, Crystal Structure Of Aminotransferase Prk07036 From
Rhodobacter Sphaeroides Kd131
Length = 476
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 35/154 (22%), Positives = 63/154 (40%), Gaps = 13/154 (8%)
Query: 14 NLPNNCLIQSFLSLISK------GQLSEAISSLDLLAQRGIRL----PAETLAFILQQCA 63
N PN + Q +S +S G S+ DL+ + R+ P AF+ +
Sbjct: 172 NWPNFDIAQDRISFLSSPNPRHAGNRSQEAFLDDLVQEFEDRIESLGPDTIAAFLAEPIL 231
Query: 64 ESKSLKLGKR-VHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSY 122
S + + H K K ++S+ +++ + +CG + KVF +P F+
Sbjct: 232 ASGGVIIPPAGYHARFKAICEKHDILYISDEVVTGFGRCGEWFASEKVFGVVPDIITFA- 290
Query: 123 NNMLSGYANLGMMKHARNLFDNMA-ERDVVSWNT 155
+ SGY LG + + + ++ E SW T
Sbjct: 291 KGVTSGYVPLGGLAISEAVLARISGENAKGSWFT 324
>pdb|3B8F|A Chain A, Crystal Structure Of The Cytidine Deaminase From Bacillus
Anthracis
pdb|3B8F|B Chain B, Crystal Structure Of The Cytidine Deaminase From Bacillus
Anthracis
pdb|3B8F|C Chain C, Crystal Structure Of The Cytidine Deaminase From Bacillus
Anthracis
pdb|3B8F|D Chain D, Crystal Structure Of The Cytidine Deaminase From Bacillus
Anthracis
Length = 142
Score = 29.6 bits (65), Expect = 4.8, Method: Composition-based stats.
Identities = 20/73 (27%), Positives = 37/73 (50%), Gaps = 5/73 (6%)
Query: 403 AIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLI 462
AIR+ + +SV PD I + L C +G + E + + +TH + + EH +
Sbjct: 28 AIRVEDGTIYTSVAPDVINASTEL--CMETGAILEAHKFQKKVTHSICLARENEHSE--L 83
Query: 463 ELLAQAG-CSDQL 474
++L+ G C ++L
Sbjct: 84 KVLSPCGVCQERL 96
>pdb|2B0T|A Chain A, Structure Of Monomeric Nadp Isocitrate Dehydrogenase
pdb|3MBC|A Chain A, Crystal Structure Of Monomeric Isocitrate Dehydrogenase
From Corynebacterium Glutamicum In Complex With Nadp
pdb|3MBC|B Chain B, Crystal Structure Of Monomeric Isocitrate Dehydrogenase
From Corynebacterium Glutamicum In Complex With Nadp
Length = 738
Score = 29.3 bits (64), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
Query: 47 GIRLPAETL-AFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYF 99
G L A+ L AF+L+Q A +K+ G HLK T K + H++ YF
Sbjct: 222 GTVLSAKALDAFLLEQVARAKAE--GILFSAHLKATMMKVSDPIIFGHVVRAYF 273
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.134 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,951,685
Number of Sequences: 62578
Number of extensions: 659220
Number of successful extensions: 1599
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1598
Number of HSP's gapped (non-prelim): 8
length of query: 605
length of database: 14,973,337
effective HSP length: 104
effective length of query: 501
effective length of database: 8,465,225
effective search space: 4241077725
effective search space used: 4241077725
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)