BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 007400
(605 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9SKQ4|PP167_ARATH Pentatricopeptide repeat-containing protein At2g21090
OS=Arabidopsis thaliana GN=PCMP-E48 PE=2 SV=1
Length = 597
Score = 727 bits (1876), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 342/583 (58%), Positives = 445/583 (76%), Gaps = 3/583 (0%)
Query: 19 CLIQSFLSL-ISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLH 77
C+ QSFLS +K +LS+A+S L+ L Q+GIRLP + LA +LQQC ++KSLK GK +H H
Sbjct: 12 CVAQSFLSKHATKAELSQAVSRLESLTQQGIRLPFDLLASLLQQCGDTKSLKQGKWIHRH 71
Query: 78 LKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKH 137
LK+T K P T LSNHLI MY KCG +DA KVFD++ ++NL+S+NNM+SGY GM+
Sbjct: 72 LKITGFKRPNTLLSNHLIGMYMKCGKPIDACKVFDQMHLRNLYSWNNMVSGYVKSGMLVR 131
Query: 138 ARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVK 197
AR +FD+M ERDVVSWNTM+IGYA+ G + E L FYK RR I NEFSFAG+LT CVK
Sbjct: 132 ARVVFDSMPERDVVSWNTMVIGYAQDGNLHEALWFYKEFRRSGIKFNEFSFAGLLTACVK 191
Query: 198 LEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTM 257
+L+L RQ HGQVLV GFLSNVV+S SI+DAYAKCG++ A+R FDE +D+ WTT+
Sbjct: 192 SRQLQLNRQAHGQVLVAGFLSNVVLSCSIIDAYAKCGQMESAKRCFDEMTVKDIHIWTTL 251
Query: 258 VSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQ 317
+SGYAKLGDME+A KLF EMPEKNPVSWT LIAGY R G G +AL+LF +M+ L ++P Q
Sbjct: 252 ISGYAKLGDMEAAEKLFCEMPEKNPVSWTALIAGYVRQGSGNRALDLFRKMIALGVKPEQ 311
Query: 318 HTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDL 377
TFSSCLCA ASI SL+HGK++HG++IRTN R N IV+SSLIDMYSK G L +VF +
Sbjct: 312 FTFSSCLCASASIASLRHGKEIHGYMIRTNVRPNAIVISSLIDMYSKSGSLEASERVFRI 371
Query: 378 TDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQE 437
D+K + + WNTMISAL QHG +A+R+ DM++ V+P++ TL VILNAC+HSGLV+E
Sbjct: 372 CDDKHDCVFWNTMISALAQHGLGHKALRMLDDMIKFRVQPNRTTLVVILNACSHSGLVEE 431
Query: 438 GLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVC 497
GL +FESMT GI+P+QEH+ACLI+LL +AGC +LM ++E+MP+E D ++WNA+ GVC
Sbjct: 432 GLRWFESMTVQHGIVPDQEHYACLIDLLGRAGCFKELMRKIEEMPFEPDKHIWNAILGVC 491
Query: 498 RIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQA 557
RIHGN ++G+K D+LI +P+SSA + LLSSIY+ GK LVEK+R ++ +R+ KE+A
Sbjct: 492 RIHGNEELGKKAADELIKLDPESSAPYILLSSIYADHGKWELVEKLRGVMKKRRVNKEKA 551
Query: 558 ISWIEIENKVHAFSVSDS--LHPMRDVLYSVLEQLAGQMGEDA 598
+SWIEIE KV AF+VSD H ++ +Y +L LA + E+A
Sbjct: 552 VSWIEIEKKVEAFTVSDGSHAHARKEEIYFILHNLAAVIEEEA 594
>sp|Q9SHZ8|PP168_ARATH Pentatricopeptide repeat-containing protein At2g22070
OS=Arabidopsis thaliana GN=PCMP-H41 PE=3 SV=1
Length = 786
Score = 392 bits (1008), Expect = e-108, Method: Compositional matrix adjust.
Identities = 200/564 (35%), Positives = 340/564 (60%), Gaps = 6/564 (1%)
Query: 31 GQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVH-LHLKLTQRKTPTTF 89
GQ +AI + + + GI TL +L A ++ ++ GK+VH +KL R +
Sbjct: 125 GQYHKAIRVMGDMVKEGIEPTQFTLTNVLASVAATRCMETGKKVHSFIVKLGLRGNVS-- 182
Query: 90 LSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERD 149
+SN L++MY KCG + A+ VFD++ V+++ S+N M++ + +G M A F+ MAERD
Sbjct: 183 VSNSLLNMYAKCGDPMMAKFVFDRMVVRDISSWNAMIALHMQVGQMDLAMAQFEQMAERD 242
Query: 150 VVSWNTMIIGYAKSGAVEEGLK-FYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVH 208
+V+WN+MI G+ + G L F K+LR +S + F+ A +L+ C LE+L + +Q+H
Sbjct: 243 IVTWNSMISGFNQRGYDLRALDIFSKMLRDSLLSPDRFTLASVLSACANLEKLCIGKQIH 302
Query: 209 GQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARD--VLTWTTMVSGYAKLGD 266
++ TGF + ++ ++++ Y++CG + ARRL ++ +D + +T ++ GY KLGD
Sbjct: 303 SHIVTTGFDISGIVLNALISMYSRCGGVETARRLIEQRGTKDLKIEGFTALLDGYIKLGD 362
Query: 267 MESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCA 326
M A +F + +++ V+WT +I GY ++G +A+ LF M+ RPN +T ++ L
Sbjct: 363 MNQAKNIFVSLKDRDVVAWTAMIVGYEQHGSYGEAINLFRSMVGGGQRPNSYTLAAMLSV 422
Query: 327 CASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSML 386
+S+ SL HGKQ+HG +++ + V ++LI MY+K G + + FDL + +++
Sbjct: 423 ASSLASLSHGKQIHGSAVKSGEIYSVSVSNALITMYAKAGNITSASRAFDLIRCERDTVS 482
Query: 387 WNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMT 446
W +MI AL QHG+ E+A+ LF M+ ++PD IT + +ACTH+GLV +G YF+ M
Sbjct: 483 WTSMIIALAQHGHAEEALELFETMLMEGLRPDHITYVGVFSACTHAGLVNQGRQYFDMMK 542
Query: 447 HDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMG 506
IIP H+AC+++L +AG + +EKMP E D W +L CR+H NID+G
Sbjct: 543 DVDKIIPTLSHYACMVDLFGRAGLLQEAQEFIEKMPIEPDVVTWGSLLSACRVHKNIDLG 602
Query: 507 RKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENK 566
+ ++L+ P++S + L+++YSA GK K+R+ + + + KKEQ SWIE+++K
Sbjct: 603 KVAAERLLLLEPENSGAYSALANLYSACGKWEEAAKIRKSMKDGRVKKEQGFSWIEVKHK 662
Query: 567 VHAFSVSDSLHPMRDVLYSVLEQL 590
VH F V D HP ++ +Y ++++
Sbjct: 663 VHVFGVEDGTHPEKNEIYMTMKKI 686
Score = 220 bits (561), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 135/497 (27%), Positives = 246/497 (49%), Gaps = 40/497 (8%)
Query: 87 TTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMA 146
+ +L N+L+++Y K G + ARK+FD++P++ FS+N +LS Y+ G M FD +
Sbjct: 48 SVYLMNNLMNVYSKTGYALHARKLFDEMPLRTAFSWNTVLSAYSKRGDMDSTCEFFDQLP 107
Query: 147 ERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQ 206
+RD VSW TMI+GY G + ++ + + I +F+ +L ++ ++
Sbjct: 108 QRDSVSWTTMIVGYKNIGQYHKAIRVMGDMVKEGIEPTQFTLTNVLASVAATRCMETGKK 167
Query: 207 VHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGD 266
VH ++ G NV +S+S+++ YAKCG+ A+ +FD RD+ +W M++ + ++G
Sbjct: 168 VHSFIVKLGLRGNVSVSNSLLNMYAKCGDPMMAKFVFDRMVVRDISSWNAMIALHMQVGQ 227
Query: 267 MESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILR---IRPNQHTFSSC 323
M+ A F +M E++ V+W ++I+G+ + G +AL++F++M LR + P++ T +S
Sbjct: 228 MDLAMAQFEQMAERDIVTWNSMISGFNQRGYDLRALDIFSKM--LRDSLLSPDRFTLASV 285
Query: 324 LCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKE- 382
L ACA++ L GKQ+H ++ T F + IV+++LI MYS+CG + R++ + K+
Sbjct: 286 LSACANLEKLCIGKQIHSHIVTTGFDISGIVLNALISMYSRCGGVETARRLIEQRGTKDL 345
Query: 383 -------------------------------NSMLWNTMISALTQHGYDEQAIRLFHDMV 411
+ + W MI QHG +AI LF MV
Sbjct: 346 KIEGFTALLDGYIKLGDMNQAKNIFVSLKDRDVVAWTAMIVGYEQHGSYGEAINLFRSMV 405
Query: 412 RSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCS 471
+P+ TLA +L+ + + G S G I + LI + A+AG
Sbjct: 406 GGGQRPNSYTLAAMLSVASSLASLSHGKQIHGSAVKS-GEIYSVSVSNALITMYAKAGNI 464
Query: 472 DQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIY 531
+ + E D+ W ++ HG+ + ++ + ++ + + H ++
Sbjct: 465 TSASRAFDLIRCERDTVSWTSMIIALAQHGHAEEALELFETMLMEGLRPD--HITYVGVF 522
Query: 532 SALGKGRLVEKVRQLIN 548
SA LV + RQ +
Sbjct: 523 SACTHAGLVNQGRQYFD 539
Score = 164 bits (414), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 90/285 (31%), Positives = 154/285 (54%), Gaps = 39/285 (13%)
Query: 186 FSFAGILTICVKLEELKLTRQ--------VHGQVLVTGFLSNVVISSSIVDAYAKCGELS 237
S + +L +C L + + + VH +V+ +G + +V + +++++ Y+K G
Sbjct: 7 LSLSTLLELCTNLLQKSVNKSNGRFTAQLVHCRVIKSGLMFSVYLMNNLMNVYSKTGYAL 66
Query: 238 DARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGL 297
AR+LFDE R +W T++S Y+K GDM+S + F+++P+++ VSWTT+I GY G
Sbjct: 67 HARKLFDEMPLRTAFSWNTVLSAYSKRGDMDSTCEFFDQLPQRDSVSWTTMIVGYKNIGQ 126
Query: 298 GQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSS 357
KA+ + M+ I P Q T ++ L + A+ ++ GK+VH F+++ R N V +S
Sbjct: 127 YHKAIRVMGDMVKEGIEPTQFTLTNVLASVAATRCMETGKKVHSFIVKLGLRGNVSVSNS 186
Query: 358 LIDMYSKCGCLNDGRQVFDLTDNKE----NSML--------------------------W 387
L++MY+KCG + VFD ++ N+M+ W
Sbjct: 187 LLNMYAKCGDPMMAKFVFDRMVVRDISSWNAMIALHMQVGQMDLAMAQFEQMAERDIVTW 246
Query: 388 NTMISALTQHGYDEQAIRLFHDMVRSS-VKPDKITLAVILNACTH 431
N+MIS Q GYD +A+ +F M+R S + PD+ TLA +L+AC +
Sbjct: 247 NSMISGFNQRGYDLRALDIFSKMLRDSLLSPDRFTLASVLSACAN 291
Score = 33.9 bits (76), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 27/157 (17%), Positives = 70/157 (44%), Gaps = 4/157 (2%)
Query: 25 LSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRK 84
++L G EA+ + + G+R T + C + + G++ +K +
Sbjct: 488 IALAQHGHAEEALELFETMLMEGLRPDHITYVGVFSACTHAGLVNQGRQYFDMMKDVDKI 547
Query: 85 TPTTFLSNHLISMYFKCGSDVDARKVFDKIPVK-NLFSYNNMLSG---YANLGMMKHARN 140
PT ++ ++ + G +A++ +K+P++ ++ ++ ++LS + N+ + K A
Sbjct: 548 IPTLSHYACMVDLFGRAGLLQEAQEFIEKMPIEPDVVTWGSLLSACRVHKNIDLGKVAAE 607
Query: 141 LFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLR 177
+ + +++ + Y+ G EE K K ++
Sbjct: 608 RLLLLEPENSGAYSALANLYSACGKWEEAAKIRKSMK 644
>sp|Q9SY02|PP301_ARATH Pentatricopeptide repeat-containing protein At4g02750
OS=Arabidopsis thaliana GN=PCMP-H24 PE=3 SV=1
Length = 781
Score = 369 bits (947), Expect = e-101, Method: Compositional matrix adjust.
Identities = 192/560 (34%), Positives = 318/560 (56%), Gaps = 43/560 (7%)
Query: 66 KSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNM 125
++ LGK L + +R + N ++S Y + G DAR VFD++P KN S+N +
Sbjct: 138 RNRNLGKARELFEIMPERDVCSW---NTMLSGYAQNGCVDDARSVFDRMPEKNDVSWNAL 194
Query: 126 LSGYANLGMMKHA-------------------------------RNLFDNMAERDVVSWN 154
LS Y M+ A R FD+M RDVVSWN
Sbjct: 195 LSAYVQNSKMEEACMLFKSRENWALVSWNCLLGGFVKKKKIVEARQFFDSMNVRDVVSWN 254
Query: 155 TMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVT 214
T+I GYA+SG ++E + + S + F++ +++ ++ ++ R++ ++
Sbjct: 255 TIITGYAQSGKIDEARQLFDE----SPVQDVFTWTAMVSGYIQNRMVEEARELFDKMPE- 309
Query: 215 GFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLF 274
N V ++++ Y + + A+ LFD R+V TW TM++GYA+ G + A LF
Sbjct: 310 ---RNEVSWNAMLAGYVQGERMEMAKELFDVMPCRNVSTWNTMITGYAQCGKISEAKNLF 366
Query: 275 NEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLK 334
++MP+++PVSW +IAGY+++G +AL LF +M R N+ +FSS L CA +V+L+
Sbjct: 367 DKMPKRDPVSWAAMIAGYSQSGHSFEALRLFVQMEREGGRLNRSSFSSALSTCADVVALE 426
Query: 335 HGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISAL 394
GKQ+HG L++ + + V ++L+ MY KCG + + +F K+ + WNTMI+
Sbjct: 427 LGKQLHGRLVKGGYETGCFVGNALLLMYCKCGSIEEANDLFKEMAGKD-IVSWNTMIAGY 485
Query: 395 TQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPN 454
++HG+ E A+R F M R +KPD T+ +L+AC+H+GLV +G YF +MT D G++PN
Sbjct: 486 SRHGFGEVALRFFESMKREGLKPDDATMVAVLSACSHTGLVDKGRQYFYTMTQDYGVMPN 545
Query: 455 QEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLI 514
+H+AC+++LL +AG + N ++ MP+E D+ +W L G R+HGN ++ D++
Sbjct: 546 SQHYACMVDLLGRAGLLEDAHNLMKNMPFEPDAAIWGTLLGASRVHGNTELAETAADKIF 605
Query: 515 DQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSD 574
P++S + LLS++Y++ G+ V K+R + ++ KK SWIEI+NK H FSV D
Sbjct: 606 AMEPENSGMYVLLSNLYASSGRWGDVGKLRVRMRDKGVKKVPGYSWIEIQNKTHTFSVGD 665
Query: 575 SLHPMRDVLYSVLEQLAGQM 594
HP +D +++ LE+L +M
Sbjct: 666 EFHPEKDEIFAFLEELDLRM 685
Score = 169 bits (427), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 112/366 (30%), Positives = 183/366 (50%), Gaps = 71/366 (19%)
Query: 92 NHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVV 151
N +IS Y + G ARK+FD++P ++L S+N M+ GY + AR LF+ M ERDV
Sbjct: 99 NGMISGYLRNGEFELARKLFDEMPERDLVSWNVMIKGYVRNRNLGKARELFEIMPERDVC 158
Query: 152 SWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICV---KLEE---LKLTR 205
SWNTM+ GYA++G V++ + + N+ S+ +L+ V K+EE L +R
Sbjct: 159 SWNTMLSGYAQNGCVDDARSVFDRM----PEKNDVSWNALLSAYVQNSKMEEACMLFKSR 214
Query: 206 Q----VHGQVLVTGFLS-----------------NVVISSSIVDAYAKCGELSDARRLFD 244
+ V L+ GF+ +VV ++I+ YA+ G++ +AR+LFD
Sbjct: 215 ENWALVSWNCLLGGFVKKKKIVEARQFFDSMNVRDVVSWNTIITGYAQSGKIDEARQLFD 274
Query: 245 ETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALEL 304
E+ +DV TWT MVSGY + +E A +LF++MPE+N VSW ++AGY + + A EL
Sbjct: 275 ESPVQDVFTWTAMVSGYIQNRMVEEARELFDKMPERNEVSWNAMLAGYVQGERMEMAKEL 334
Query: 305 FTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSK 364
F M C N +++I Y++
Sbjct: 335 FDVM-----------------PC----------------------RNVSTWNTMITGYAQ 355
Query: 365 CGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAV 424
CG +++ + +FD K + + W MI+ +Q G+ +A+RLF M R + ++ + +
Sbjct: 356 CGKISEAKNLFDKMP-KRDPVSWAAMIAGYSQSGHSFEALRLFVQMEREGGRLNRSSFSS 414
Query: 425 ILNACT 430
L+ C
Sbjct: 415 ALSTCA 420
Score = 109 bits (273), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 96/372 (25%), Positives = 154/372 (41%), Gaps = 58/372 (15%)
Query: 122 YNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSI 181
+N +S Y G A +F M VS+N MI GY ++G E K +
Sbjct: 67 WNVAISSYMRTGRCNEALRVFKRMPRWSSVSYNGMISGYLRNGEFELARKLF-------- 118
Query: 182 SCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARR 241
+E+ V V++ G++ N L AR
Sbjct: 119 -----------------DEMPERDLVSWNVMIKGYVRNR--------------NLGKARE 147
Query: 242 LFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKA 301
LF+ RDV +W TM+SGYA+ G ++ A +F+ MPEKN VSW L++ Y +N ++A
Sbjct: 148 LFEIMPERDVCSWNTMLSGYAQNGCVDDARSVFDRMPEKNDVSWNALLSAYVQNSKMEEA 207
Query: 302 LELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDM 361
LF + R N S C V K + F N R + + +++I
Sbjct: 208 CMLF------KSRENW-ALVSWNCLLGGFVKKKKIVEARQFFDSMNVR-DVVSWNTIITG 259
Query: 362 YSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKIT 421
Y++ G +++ RQ+FD + ++ W M+S Q+ E+A LF M + ++++
Sbjct: 260 YAQSGKIDEARQLFDESP-VQDVFTWTAMVSGYIQNRMVEEARELFDKM----PERNEVS 314
Query: 422 LAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKM 481
+L +G VQ D+ N +I AQ G + N +KM
Sbjct: 315 WNAML-----AGYVQGERMEMAKELFDVMPCRNVSTWNTMITGYAQCGKISEAKNLFDKM 369
Query: 482 PYEHDSYLWNAL 493
P + D W A+
Sbjct: 370 P-KRDPVSWAAM 380
Score = 80.5 bits (197), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 68/299 (22%), Positives = 132/299 (44%), Gaps = 25/299 (8%)
Query: 250 DVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMM 309
D+ W +S Y + G A ++F MP + VS+ +I+GY RNG + A +LF M
Sbjct: 63 DIKEWNVAISSYMRTGRCNEALRVFKRMPRWSSVSYNGMISGYLRNGEFELARKLFDEM- 121
Query: 310 ILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLN 369
P + S + + + GK F I + ++++ Y++ GC++
Sbjct: 122 -----PERDLVSWNVMIKGYVRNRNLGKARELFEIMPE--RDVCSWNTMLSGYAQNGCVD 174
Query: 370 DGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNAC 429
D R VFD K N + WN ++SA Q+ E+A LF +S ++ +L
Sbjct: 175 DARSVFDRMPEK-NDVSWNALLSAYVQNSKMEEACMLF----KSRENWALVSWNCLLGGF 229
Query: 430 THSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYL 489
+ E +F+SM + + +I AQ+G D+ ++ P + D +
Sbjct: 230 VKKKKIVEARQFFDSMN-----VRDVVSWNTIITGYAQSGKIDEARQLFDESPVQ-DVFT 283
Query: 490 WNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLIN 548
W A+ + ++ R++ D++ ++N S +++ + +G +E ++L +
Sbjct: 284 WTAMVSGYIQNRMVEEARELFDKMPERNEVS------WNAMLAGYVQGERMEMAKELFD 336
Score = 69.3 bits (168), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 73/308 (23%), Positives = 124/308 (40%), Gaps = 50/308 (16%)
Query: 31 GQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFL 90
G EA+ + + G RL + + L CA+ +L+LGK++H L +T F+
Sbjct: 388 GHSFEALRLFVQMEREGGRLNRSSFSSALSTCADVVALELGKQLHGRLVKGGYET-GCFV 446
Query: 91 SNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDV 150
N L+ MY KCGS +A +F ++ K++ S+N M++G
Sbjct: 447 GNALLLMYCKCGSIEEANDLFKEMAGKDIVSWNTMIAG---------------------- 484
Query: 151 VSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQ-VHG 209
Y++ G E L+F++ ++R + ++ + +L+ C + RQ +
Sbjct: 485 ---------YSRHGFGEVALRFFESMKREGLKPDDATMVAVLSACSHTGLVDKGRQYFYT 535
Query: 210 QVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDAR-DVLTWTTMVSGYAKLGDME 268
G + N + +VD + G L DA L D W T++ G+ E
Sbjct: 536 MTQDYGVMPNSQHYACMVDLLGRAGLLEDAHNLMKNMPFEPDAAIWGTLLGASRVHGNTE 595
Query: 269 ----SASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMM-----------ILRI 313
+A K+F PE N + L Y +G +L RM + I
Sbjct: 596 LAETAADKIFAMEPE-NSGMYVLLSNLYASSGRWGDVGKLRVRMRDKGVKKVPGYSWIEI 654
Query: 314 RPNQHTFS 321
+ HTFS
Sbjct: 655 QNKTHTFS 662
>sp|Q9SIT7|PP151_ARATH Pentatricopeptide repeat-containing protein At2g13600
OS=Arabidopsis thaliana GN=PCMP-E76 PE=3 SV=1
Length = 697
Score = 364 bits (935), Expect = e-100, Method: Compositional matrix adjust.
Identities = 194/595 (32%), Positives = 330/595 (55%), Gaps = 49/595 (8%)
Query: 13 KNLP--NNCLIQSFLSLISK-GQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLK 69
+++P + C S +S ++ + EA+ ++ + G L + A +L C+ +
Sbjct: 110 RSMPERDQCTWNSMVSGFAQHDRCEEALCYFAMMHKEGFVLNEYSFASVLSACSGLNDMN 169
Query: 70 LGKRVHLHLKLTQRKTP---TTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNML 126
G +VH + K+P ++ + L+ MY KCG+ DA++VF
Sbjct: 170 KGVQVHSLIA----KSPFLSDVYIGSALVDMYSKCGNVNDAQRVF--------------- 210
Query: 127 SGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEF 186
D M +R+VVSWN++I + ++G E L ++++ + +E
Sbjct: 211 ----------------DEMGDRNVVSWNSLITCFEQNGPAVEALDVFQMMLESRVEPDEV 254
Query: 187 SFAGILTICVKLEELKLTRQVHGQVLVTGFLSN-VVISSSIVDAYAKCGELSDARRLFDE 245
+ A +++ C L +K+ ++VHG+V+ L N +++S++ VD YAKC + +AR +FD
Sbjct: 255 TLASVISACASLSAIKVGQEVHGRVVKNDKLRNDIILSNAFVDMYAKCSRIKEARFIFDS 314
Query: 246 TDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELF 305
R+V+ T+M+SGYA ++A +F +M E+N VSW LIAGYT+NG ++AL LF
Sbjct: 315 MPIRNVIAETSMISGYAMAASTKAARLMFTKMAERNVVSWNALIAGYTQNGENEEALSLF 374
Query: 306 TRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVH------GFLIRTNFRSNTIVMSSLI 359
+ + P ++F++ L ACA + L G Q H GF ++ + V +SLI
Sbjct: 375 CLLKRESVCPTHYSFANILKACADLAELHLGMQAHVHVLKHGFKFQSGEEDDIFVGNSLI 434
Query: 360 DMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDK 419
DMY KCGC+ +G VF ++ + WN MI Q+GY +A+ LF +M+ S KPD
Sbjct: 435 DMYVKCGCVEEGYLVFRKMMERD-CVSWNAMIIGFAQNGYGNEALELFREMLESGEKPDH 493
Query: 420 ITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLE 479
IT+ +L+AC H+G V+EG YF SMT D G+ P ++H+ C+++LL +AG ++ + +E
Sbjct: 494 ITMIGVLSACGHAGFVEEGRHYFSSMTRDFGVAPLRDHYTCMVDLLGRAGFLEEAKSMIE 553
Query: 480 KMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRL 539
+MP + DS +W +L C++H NI +G+ V ++L++ P +S + LLS++Y+ LGK
Sbjct: 554 EMPMQPDSVIWGSLLAACKVHRNITLGKYVAEKLLEVEPSNSGPYVLLSNMYAELGKWED 613
Query: 540 VEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQM 594
V VR+ + + K+ SWI+I+ H F V D HP + ++S+L+ L +M
Sbjct: 614 VMNVRKSMRKEGVTKQPGCSWIKIQGHDHVFMVKDKSHPRKKQIHSLLDILIAEM 668
Score = 238 bits (608), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 158/551 (28%), Positives = 272/551 (49%), Gaps = 84/551 (15%)
Query: 38 SSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRK-TPTTFLSNHLIS 96
S L L A + A +L C +SK + R ++H + + + F+ N LI
Sbjct: 5 SFLKLAADLSSFTDSSPFAKLLDSCIKSKLSAIYVR-YVHASVIKSGFSNEIFIQNRLID 63
Query: 97 MYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTM 156
Y KCGS D R+VFDK+P +N++++N++++G LG + A +LF +M ERD +WN+M
Sbjct: 64 AYSKCGSLEDGRQVFDKMPQRNIYTWNSVVTGLTKLGFLDEADSLFRSMPERDQCTWNSM 123
Query: 157 IIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGF 216
+ G+A+ EE L ++ ++ + NE+SFA +L+ C L ++ QVH + + F
Sbjct: 124 VSGFAQHDRCEEALCYFAMMHKEGFVLNEYSFASVLSACSGLNDMNKGVQVHSLIAKSPF 183
Query: 217 LSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNE 276
LS+V I S++VD Y+KCG ++DA+R+FDE R+V++W
Sbjct: 184 LSDVYIGSALVDMYSKCGNVNDAQRVFDEMGDRNVVSW---------------------- 221
Query: 277 MPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHG 336
+LI + +NG +AL++F M+ R+ P++ T +S + ACAS+ ++K G
Sbjct: 222 ---------NSLITCFEQNGPAVEALDVFQMMLESRVEPDEVTLASVISACASLSAIKVG 272
Query: 337 KQVHGFLIRTNFRSNTIVMS-SLIDMYSKCGCLNDGRQVFDLTDNK----ENSML----- 386
++VHG +++ + N I++S + +DMY+KC + + R +FD + E SM+
Sbjct: 273 QEVHGRVVKNDKLRNDIILSNAFVDMYAKCSRIKEARFIFDSMPIRNVIAETSMISGYAM 332
Query: 387 ---------------------WNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVI 425
WN +I+ TQ+G +E+A+ LF + R SV P + A I
Sbjct: 333 AASTKAARLMFTKMAERNVVSWNALIAGYTQNGENEEALSLFCLLKRESVCPTHYSFANI 392
Query: 426 LNAC-----------THSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQL 474
L AC H +++ G F+S D + N LI++ + GC ++
Sbjct: 393 LKACADLAELHLGMQAHVHVLKHGFK-FQSGEEDDIFVGNS-----LIDMYVKCGCVEEG 446
Query: 475 MNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSAL 534
KM E D WNA+ +G + ++ ++++ + H + + SA
Sbjct: 447 YLVFRKM-MERDCVSWNAMIIGFAQNGYGNEALELFREMLESGEKPD--HITMIGVLSAC 503
Query: 535 GKGRLVEKVRQ 545
G VE+ R
Sbjct: 504 GHAGFVEEGRH 514
>sp|O23169|PP353_ARATH Pentatricopeptide repeat-containing protein At4g37170
OS=Arabidopsis thaliana GN=PCMP-H5 PE=3 SV=1
Length = 691
Score = 356 bits (914), Expect = 3e-97, Method: Compositional matrix adjust.
Identities = 185/567 (32%), Positives = 320/567 (56%), Gaps = 38/567 (6%)
Query: 33 LSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSN 92
L EA+ L R + PA T ++Q C+++++L+ GK+VH H++ T P + N
Sbjct: 70 LREAVQ----LLGRAKKPPASTYCNLIQVCSQTRALEEGKKVHEHIR-TSGFVPGIVIWN 124
Query: 93 HLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVS 152
L+ MY KCGS VDARKVFD++P ++L S+N M++GYA +G+++ AR LFD M E+D S
Sbjct: 125 RLLRMYAKCGSLVDARKVFDEMPNRDLCSWNVMVNGYAEVGLLEEARKLFDEMTEKDSYS 184
Query: 153 WNTMIIGYAKSGAVEEGLKFYKVLRRFSIS-CNEFSFAGILTICVKLEELKLTRQVHGQV 211
W M+ GY K EE L Y +++R S N F+ + + ++ ++ +++HG +
Sbjct: 185 WTAMVTGYVKKDQPEEALVLYSLMQRVPNSRPNIFTVSIAVAAAAAVKCIRRGKEIHGHI 244
Query: 212 LVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESAS 271
+ G S+ V+ W++++ Y K G ++ A
Sbjct: 245 VRAGLDSDEVL-------------------------------WSSLMDMYGKCGCIDEAR 273
Query: 272 KLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIV 331
+F+++ EK+ VSWT++I Y ++ ++ LF+ ++ RPN++TF+ L ACA +
Sbjct: 274 NIFDKIVEKDVVSWTSMIDRYFKSSRWREGFSLFSELVGSCERPNEYTFAGVLNACADLT 333
Query: 332 SLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMI 391
+ + GKQVHG++ R F + SSL+DMY+KCG + + V D K + + W ++I
Sbjct: 334 TEELGKQVHGYMTRVGFDPYSFASSSLVDMYTKCGNIESAKHVVDGCP-KPDLVSWTSLI 392
Query: 392 SALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGI 451
Q+G ++A++ F +++S KPD +T +L+ACTH+GLV++GL +F S+T +
Sbjct: 393 GGCAQNGQPDEALKYFDLLLKSGTKPDHVTFVNVLSACTHAGLVEKGLEFFYSITEKHRL 452
Query: 452 IPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVD 511
+H+ CL++LLA++G +QL + + +MP + +LW ++ G C +GNID+ +
Sbjct: 453 SHTSDHYTCLVDLLARSGRFEQLKSVISEMPMKPSKFLWASVLGGCSTYGNIDLAEEAAQ 512
Query: 512 QLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFS 571
+L P++ T+ +++IY+A GK K+R+ + E K SW EI+ K H F
Sbjct: 513 ELFKIEPENPVTYVTMANIYAAAGKWEEEGKMRKRMQEIGVTKRPGSSWTEIKRKRHVFI 572
Query: 572 VSDSLHPMRDVLYSVLEQLAGQMGEDA 598
+D+ HPM + + L +L +M E+
Sbjct: 573 AADTSHPMYNQIVEFLRELRKKMKEEG 599
Score = 77.8 bits (190), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 54/226 (23%), Positives = 104/226 (46%), Gaps = 14/226 (6%)
Query: 298 GQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSS 357
GQK L +++ +P T+ + + C+ +L+ GK+VH + + F ++ +
Sbjct: 66 GQKLLREAVQLLGRAKKPPASTYCNLIQVCSQTRALEEGKKVHEHIRTSGFVPGIVIWNR 125
Query: 358 LIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKP 417
L+ MY+KCG L D R+VFD N++ WN M++ + G E+A +LF +M +
Sbjct: 126 LLRMYAKCGSLVDARKVFDEMPNRDLCS-WNVMVNGYAEVGLLEEARKLFDEM----TEK 180
Query: 418 DKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGC---SDQL 474
D + ++ +E L + M PN + + A C ++
Sbjct: 181 DSYSWTAMVTGYVKKDQPEEALVLYSLMQRVPNSRPNIFTVSIAVAAAAAVKCIRRGKEI 240
Query: 475 MNQLEKMPYEHDSYLWNAL---HGVCRIHGNIDMGRKVVDQLIDQN 517
+ + + D LW++L +G C G ID R + D++++++
Sbjct: 241 HGHIVRAGLDSDEVLWSSLMDMYGKC---GCIDEARNIFDKIVEKD 283
Score = 43.1 bits (100), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 39/168 (23%), Positives = 73/168 (43%), Gaps = 8/168 (4%)
Query: 23 SFLSLIS----KGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHL 78
S+ SLI GQ EA+ DLL + G + T +L C + ++ G +
Sbjct: 387 SWTSLIGGCAQNGQPDEALKYFDLLLKSGTKPDHVTFVNVLSACTHAGLVEKGLEFFYSI 446
Query: 79 KLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVK-NLFSYNNMLSG---YANLGM 134
R + T+ L+ + + G + V ++P+K + F + ++L G Y N+ +
Sbjct: 447 TEKHRLSHTSDHYTCLVDLLARSGRFEQLKSVISEMPMKPSKFLWASVLGGCSTYGNIDL 506
Query: 135 MKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSIS 182
+ A + + V++ TM YA +G EE K K ++ ++
Sbjct: 507 AEEAAQELFKIEPENPVTYVTMANIYAAAGKWEEEGKMRKRMQEIGVT 554
>sp|Q9FRI5|PPR57_ARATH Pentatricopeptide repeat-containing protein At1g25360
OS=Arabidopsis thaliana GN=PCMP-H74 PE=2 SV=1
Length = 790
Score = 355 bits (910), Expect = 7e-97, Method: Compositional matrix adjust.
Identities = 184/512 (35%), Positives = 300/512 (58%), Gaps = 7/512 (1%)
Query: 88 TFLSNHLISMYFKCGSDVD----ARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFD 143
T +SN L+S+Y KC S ARKVFD+I K+ S+ M++GY G L +
Sbjct: 184 TSVSNALVSVYSKCASSPSLLHSARKVFDEILEKDERSWTTMMTGYVKNGYFDLGEELLE 243
Query: 144 NMAER-DVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELK 202
M + +V++N MI GY G +E L+ + + I +EF++ ++ C L+
Sbjct: 244 GMDDNMKLVAYNAMISGYVNRGFYQEALEMVRRMVSSGIELDEFTYPSVIRACATAGLLQ 303
Query: 203 LTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYA 262
L +QVH VL S +S+V Y KCG+ +AR +F++ A+D+++W ++SGY
Sbjct: 304 LGKQVHAYVLRREDFS-FHFDNSLVSLYYKCGKFDEARAIFEKMPAKDLVSWNALLSGYV 362
Query: 263 KLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSS 322
G + A +F EM EKN +SW +I+G NG G++ L+LF+ M P + FS
Sbjct: 363 SSGHIGEAKLIFKEMKEKNILSWMIMISGLAENGFGEEGLKLFSCMKREGFEPCDYAFSG 422
Query: 323 CLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKE 382
+ +CA + + +G+Q H L++ F S+ ++LI MY+KCG + + RQVF T
Sbjct: 423 AIKSCAVLGAYCNGQQYHAQLLKIGFDSSLSAGNALITMYAKCGVVEEARQVFR-TMPCL 481
Query: 383 NSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYF 442
+S+ WN +I+AL QHG+ +A+ ++ +M++ ++PD+ITL +L AC+H+GLV +G YF
Sbjct: 482 DSVSWNALIAALGQHGHGAEAVDVYEEMLKKGIRPDRITLLTVLTACSHAGLVDQGRKYF 541
Query: 443 ESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGN 502
+SM I P +H+A LI+LL ++G + +E +P++ + +W AL CR+HGN
Sbjct: 542 DSMETVYRIPPGADHYARLIDLLCRSGKFSDAESVIESLPFKPTAEIWEALLSGCRVHGN 601
Query: 503 IDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIE 562
+++G D+L P+ T+ LLS++++A G+ V +VR+L+ +R KKE A SWIE
Sbjct: 602 MELGIIAADKLFGLIPEHDGTYMLLSNMHAATGQWEEVARVRKLMRDRGVKKEVACSWIE 661
Query: 563 IENKVHAFSVSDSLHPMRDVLYSVLEQLAGQM 594
+E +VH F V D+ HP + +Y L+ L +M
Sbjct: 662 METQVHTFLVDDTSHPEAEAVYIYLQDLGKEM 693
Score = 176 bits (446), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 141/541 (26%), Positives = 248/541 (45%), Gaps = 46/541 (8%)
Query: 48 IRLPAETLAFILQQCAESK--SLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDV 105
+R A A L+ C + SL+L + VH ++ +T P + N LI +Y K
Sbjct: 8 VRAIANRYAANLRLCLPLRRTSLQLARAVHGNI-ITFGFQPRAHILNRLIDVYCKSSELN 66
Query: 106 DARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDN--MAERDVVSWNTMIIGYAKS 163
AR++FD+I + + M+SGY G + AR +F+ + RD V +N MI G++ +
Sbjct: 67 YARQLFDEISEPDKIARTTMVSGYCASGDITLARGVFEKAPVCMRDTVMYNAMITGFSHN 126
Query: 164 GAVEEGLKFYKVLRRFSISCNEFSFAGILT-ICVKLEELKLTRQVHGQVLVTGFLSNVVI 222
+ + ++ + F+FA +L + + ++ K Q H L +G +
Sbjct: 127 NDGYSAINLFCKMKHEGFKPDNFTFASVLAGLALVADDEKQCVQFHAAALKSGAGYITSV 186
Query: 223 SSSIVDAYAKCGE----LSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMP 278
S+++V Y+KC L AR++FDE +D +WTTM++GY K G + +L M
Sbjct: 187 SNALVSVYSKCASSPSLLHSARKVFDEILEKDERSWTTMMTGYVKNGYFDLGEELLEGMD 246
Query: 279 EK-NPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGK 337
+ V++ +I+GY G Q+ALE+ RM+ I ++ T+ S + ACA+ L+ GK
Sbjct: 247 DNMKLVAYNAMISGYVNRGFYQEALEMVRRMVSSGIELDEFTYPSVIRACATAGLLQLGK 306
Query: 338 QVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFD--------------------- 376
QVH +++R S +SL+ +Y KCG ++ R +F+
Sbjct: 307 QVHAYVLRREDFSFHFD-NSLVSLYYKCGKFDEARAIFEKMPAKDLVSWNALLSGYVSSG 365
Query: 377 --------LTDNKENSML-WNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILN 427
+ KE ++L W MIS L ++G+ E+ ++LF M R +P + +
Sbjct: 366 HIGEAKLIFKEMKEKNILSWMIMISGLAENGFGEEGLKLFSCMKREGFEPCDYAFSGAIK 425
Query: 428 ACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDS 487
+C G G Y + +G + LI + A+ G ++ MP DS
Sbjct: 426 SCAVLGAYCNGQQYHAQLL-KIGFDSSLSAGNALITMYAKCGVVEEARQVFRTMPC-LDS 483
Query: 488 YLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLI 547
WNAL HG+ V ++++ + + L ++ +A LV++ R+
Sbjct: 484 VSWNALIAALGQHGHGAEAVDVYEEMLKKGIRPDRI--TLLTVLTACSHAGLVDQGRKYF 541
Query: 548 N 548
+
Sbjct: 542 D 542
Score = 176 bits (446), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 108/396 (27%), Positives = 197/396 (49%), Gaps = 39/396 (9%)
Query: 11 NRKNLPNNCLIQSFLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKL 70
N K + N +I + +++G EA+ + + GI L T +++ CA + L+L
Sbjct: 248 NMKLVAYNAMISGY---VNRGFYQEALEMVRRMVSSGIELDEFTYPSVIRACATAGLLQL 304
Query: 71 GKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYA 130
GK+VH ++ +R+ + N L+S+Y+KCG +AR +F+K+P K+L S+N +LSGY
Sbjct: 305 GKQVHAYV--LRREDFSFHFDNSLVSLYYKCGKFDEARAIFEKMPAKDLVSWNALLSGYV 362
Query: 131 NLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAG 190
+ G + A+ +F M E++++SW MI G A++G EEGLK + ++R +++F+G
Sbjct: 363 SSGHIGEAKLIFKEMKEKNILSWMIMISGLAENGFGEEGLKLFSCMKREGFEPCDYAFSG 422
Query: 191 ILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARD 250
+ C L +Q H Q+L GF S++ ++++ YAKCG + +AR++F D
Sbjct: 423 AIKSCAVLGAYCNGQQYHAQLLKIGFDSSLSAGNALITMYAKCGVVEEARQVFRTMPCLD 482
Query: 251 VLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMI 310
++W + IA ++G G +A++++ M+
Sbjct: 483 SVSWNAL-------------------------------IAALGQHGHGAEAVDVYEEMLK 511
Query: 311 LRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFR--SNTIVMSSLIDMYSKCGCL 368
IRP++ T + L AC+ + G++ + T +R + LID+ + G
Sbjct: 512 KGIRPDRITLLTVLTACSHAGLVDQGRKYFDSM-ETVYRIPPGADHYARLIDLLCRSGKF 570
Query: 369 NDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAI 404
+D V + K + +W ++S HG E I
Sbjct: 571 SDAESVIESLPFKPTAEIWEALLSGCRVHGNMELGI 606
Score = 56.2 bits (134), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 57/286 (19%), Positives = 112/286 (39%), Gaps = 60/286 (20%)
Query: 310 ILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLN 369
++R N++ + LC SL+ + VHG +I F+ +++ LID+Y K LN
Sbjct: 7 LVRAIANRYAANLRLCLPLRRTSLQLARAVHGNIITFGFQPRAHILNRLIDVYCKSSELN 66
Query: 370 DGRQVFDLTDNKE--------------------------------NSMLWNTMISALTQH 397
RQ+FD + +++++N MI+ + +
Sbjct: 67 YARQLFDEISEPDKIARTTMVSGYCASGDITLARGVFEKAPVCMRDTVMYNAMITGFSHN 126
Query: 398 GYDEQAIRLFHDMVRSSVKPDKITLAVILNACT------------HSGLVQEGLTYFESM 445
AI LF M KPD T A +L H+ ++ G Y S+
Sbjct: 127 NDGYSAINLFCKMKHEGFKPDNFTFASVLAGLALVADDEKQCVQFHAAALKSGAGYITSV 186
Query: 446 THDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKM---PYEHDSYLWNALHGVCRIHGN 502
++ L+ + ++ S L++ K+ E D W + +G
Sbjct: 187 SN------------ALVSVYSKCASSPSLLHSARKVFDEILEKDERSWTTMMTGYVKNGY 234
Query: 503 IDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLIN 548
D+G ++++ + D N + A + ++S + +E VR++++
Sbjct: 235 FDLGEELLEGM-DDNMKLVAYNAMISGYVNRGFYQEALEMVRRMVS 279
Score = 38.1 bits (87), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 38/157 (24%), Positives = 69/157 (43%), Gaps = 6/157 (3%)
Query: 26 SLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKT 85
+L G +EA+ + + ++GIR TL +L C+ + + G++ ++ R
Sbjct: 492 ALGQHGHGAEAVDVYEEMLKKGIRPDRITLLTVLTACSHAGLVDQGRKYFDSMETVYRIP 551
Query: 86 PTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFS-YNNMLSGYANLGMMK----HARN 140
P LI + + G DA V + +P K + +LSG G M+ A
Sbjct: 552 PGADHYARLIDLLCRSGKFSDAESVIESLPFKPTAEIWEALLSGCRVHGNMELGIIAADK 611
Query: 141 LFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLR 177
LF + E D ++ + +A +G EE + K++R
Sbjct: 612 LFGLIPEHD-GTYMLLSNMHAATGQWEEVARVRKLMR 647
>sp|O82380|PP175_ARATH Pentatricopeptide repeat-containing protein At2g29760,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H33 PE=2
SV=1
Length = 738
Score = 350 bits (898), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 179/552 (32%), Positives = 308/552 (55%), Gaps = 34/552 (6%)
Query: 40 LDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYF 99
LD++++ T F+++ AE SL LG+ +H + + F++N LI YF
Sbjct: 119 LDMVSESQCYPNKYTFPFLIKAAAEVSSLSLGQSLH-GMAVKSAVGSDVFVANSLIHCYF 177
Query: 100 KCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIG 159
CG D+D+ A +F + E+DVVSWN+MI G
Sbjct: 178 SCG-DLDS------------------------------ACKVFTTIKEKDVVSWNSMING 206
Query: 160 YAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSN 219
+ + G+ ++ L+ +K + + + + G+L+ C K+ L+ RQV + N
Sbjct: 207 FVQKGSPDKALELFKKMESEDVKASHVTMVGVLSACAKIRNLEFGRQVCSYIEENRVNVN 266
Query: 220 VVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPE 279
+ ++++++D Y KCG + DA+RLFD + +D +TWTTM+ GYA D E+A ++ N MP+
Sbjct: 267 LTLANAMLDMYTKCGSIEDAKRLFDAMEEKDNVTWTTMLDGYAISEDYEAAREVLNSMPQ 326
Query: 280 KNPVSWTTLIAGYTRNGLGQKALELFTRMMILR-IRPNQHTFSSCLCACASIVSLKHGKQ 338
K+ V+W LI+ Y +NG +AL +F + + + ++ NQ T S L ACA + +L+ G+
Sbjct: 327 KDIVAWNALISAYEQNGKPNEALIVFHELQLQKNMKLNQITLVSTLSACAQVGALELGRW 386
Query: 339 VHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHG 398
+H ++ + R N V S+LI MYSKCG L R+VF+ + K + +W+ MI L HG
Sbjct: 387 IHSYIKKHGIRMNFHVTSALIHMYSKCGDLEKSREVFNSVE-KRDVFVWSAMIGGLAMHG 445
Query: 399 YDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHH 458
+A+ +F+ M ++VKP+ +T + AC+H+GLV E + F M + GI+P ++H+
Sbjct: 446 CGNEAVDMFYKMQEANVKPNGVTFTNVFCACSHTGLVDEAESLFHQMESNYGIVPEEKHY 505
Query: 459 ACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNP 518
AC++++L ++G ++ + +E MP + +W AL G C+IH N+++ +L++ P
Sbjct: 506 ACIVDVLGRSGYLEKAVKFIEAMPIPPSTSVWGALLGACKIHANLNLAEMACTRLLELEP 565
Query: 519 QSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHP 578
++ H LLS+IY+ LGK V ++R+ + KKE S IEI+ +H F D+ HP
Sbjct: 566 RNDGAHVLLSNIYAKLGKWENVSELRKHMRVTGLKKEPGCSSIEIDGMIHEFLSGDNAHP 625
Query: 579 MRDVLYSVLEQL 590
M + +Y L ++
Sbjct: 626 MSEKVYGKLHEV 637
Score = 155 bits (392), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 112/462 (24%), Positives = 217/462 (46%), Gaps = 78/462 (16%)
Query: 126 LSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKS-GAVEEGLKFYKVLRRFSISCN 184
LS +A+L ++AR +FD + + + +WNT+I YA V F ++ N
Sbjct: 74 LSSFASL---EYARKVFDEIPKPNSFAWNTLIRAYASGPDPVLSIWAFLDMVSESQCYPN 130
Query: 185 EFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFD 244
+++F ++ ++ L L + +HG + + S+V +++S++ Y CG+L A ++F
Sbjct: 131 KYTFPFLIKAAAEVSSLSLGQSLHGMAVKSAVGSDVFVANSLIHCYFSCGDLDSACKVFT 190
Query: 245 ETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALEL 304
+DV++W +M++G+ + G + KALEL
Sbjct: 191 TIKEKDVVSWNSMINGFVQKGSPD-------------------------------KALEL 219
Query: 305 FTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSK 364
F +M ++ + T L ACA I +L+ G+QV ++ N + ++++DMY+K
Sbjct: 220 FKKMESEDVKASHVTMVGVLSACAKIRNLEFGRQVCSYIEENRVNVNLTLANAMLDMYTK 279
Query: 365 CGCLNDGRQVFDLTDNKEN----SML--------------------------WNTMISAL 394
CG + D +++FD + K+N +ML WN +ISA
Sbjct: 280 CGSIEDAKRLFDAMEEKDNVTWTTMLDGYAISEDYEAAREVLNSMPQKDIVAWNALISAY 339
Query: 395 TQHGYDEQAIRLFHDM-VRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIP 453
Q+G +A+ +FH++ ++ ++K ++ITL L+AC G ++ G + S GI
Sbjct: 340 EQNGKPNEALIVFHELQLQKNMKLNQITLVSTLSACAQVGALELG-RWIHSYIKKHGIRM 398
Query: 454 NQEHHACLIELLAQAG---CSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVV 510
N + LI + ++ G S ++ N +EK D ++W+A+ G +HG G + V
Sbjct: 399 NFHVTSALIHMYSKCGDLEKSREVFNSVEK----RDVFVWSAMIGGLAMHG---CGNEAV 451
Query: 511 DQLIDQNPQSSATHGL-LSSIYSALGKGRLVEKVRQLINERQ 551
D + +G+ ++++ A LV++ L ++ +
Sbjct: 452 DMFYKMQEANVKPNGVTFTNVFCACSHTGLVDEAESLFHQME 493
Score = 150 bits (378), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 88/383 (22%), Positives = 181/383 (47%), Gaps = 37/383 (9%)
Query: 18 NCLIQSFLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLH 77
N +I F + KG +A+ + ++ T+ +L CA+ ++L+ G++V +
Sbjct: 201 NSMINGF---VQKGSPDKALELFKKMESEDVKASHVTMVGVLSACAKIRNLEFGRQVCSY 257
Query: 78 LKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKH 137
++ + T L+N ++ MY KCGS DA+++FD + K+ ++ ML GYA +
Sbjct: 258 IEENRVNVNLT-LANAMLDMYTKCGSIEDAKRLFDAMEEKDNVTWTTMLDGYAISEDYEA 316
Query: 138 ARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGL-KFYKVLRRFSISCNEFSFAGILTICV 196
AR + ++M ++D+V+WN +I Y ++G E L F+++ + ++ N+ + L+ C
Sbjct: 317 AREVLNSMPQKDIVAWNALISAYEQNGKPNEALIVFHELQLQKNMKLNQITLVSTLSACA 376
Query: 197 KLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTT 256
++ L+L R +H + G N ++S+++ Y+KCG+L +R +F+ + RDV W+
Sbjct: 377 QVGALELGRWIHSYIKKHGIRMNFHVTSALIHMYSKCGDLEKSREVFNSVEKRDVFVWSA 436
Query: 257 MVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPN 316
M+ G A +G G +A+++F +M ++PN
Sbjct: 437 MIGGLA-------------------------------MHGCGNEAVDMFYKMQEANVKPN 465
Query: 317 QHTFSSCLCACASIVSLKHGKQV-HGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVF 375
TF++ CAC+ + + + H + ++D+ + G L +
Sbjct: 466 GVTFTNVFCACSHTGLVDEAESLFHQMESNYGIVPEEKHYACIVDVLGRSGYLEKAVKFI 525
Query: 376 DLTDNKENSMLWNTMISALTQHG 398
+ ++ +W ++ A H
Sbjct: 526 EAMPIPPSTSVWGALLGACKIHA 548
Score = 101 bits (252), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 69/237 (29%), Positives = 113/237 (47%), Gaps = 34/237 (14%)
Query: 195 CVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTW 254
CV L +LK Q HG ++ TG S D Y+ A +LF
Sbjct: 40 CVSLRQLK---QTHGHMIRTGTFS---------DPYS-------ASKLF----------- 69
Query: 255 TTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMI-LRI 313
++ + +E A K+F+E+P+ N +W TLI Y ++ F M+ +
Sbjct: 70 --AMAALSSFASLEYARKVFDEIPKPNSFAWNTLIRAYASGPDPVLSIWAFLDMVSESQC 127
Query: 314 RPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQ 373
PN++TF + A A + SL G+ +HG +++ S+ V +SLI Y CG L+ +
Sbjct: 128 YPNKYTFPFLIKAAAEVSSLSLGQSLHGMAVKSAVGSDVFVANSLIHCYFSCGDLDSACK 187
Query: 374 VFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACT 430
VF T +++ + WN+MI+ Q G ++A+ LF M VK +T+ +L+AC
Sbjct: 188 VFT-TIKEKDVVSWNSMINGFVQKGSPDKALELFKKMESEDVKASHVTMVGVLSACA 243
>sp|Q9LNU6|PPR53_ARATH Pentatricopeptide repeat-containing protein At1g20230
OS=Arabidopsis thaliana GN=PCMP-H21 PE=2 SV=2
Length = 760
Score = 338 bits (868), Expect = 6e-92, Method: Compositional matrix adjust.
Identities = 182/596 (30%), Positives = 325/596 (54%), Gaps = 16/596 (2%)
Query: 21 IQSFLSLI---SKGQL-SEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHL 76
I SF SLI +K +L +++I + G+ + L + + CAE + K+GK++H
Sbjct: 81 IYSFSSLIYALTKAKLFTQSIGVFSRMFSHGLIPDSHVLPNLFKVCAELSAFKVGKQIHC 140
Query: 77 HLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMK 136
+ F+ + MY +CG DARKVFD++ K++ + + +L YA G ++
Sbjct: 141 -VSCVSGLDMDAFVQGSMFHMYMRCGRMGDARKVFDRMSDKDVVTCSALLCAYARKGCLE 199
Query: 137 HARNLFDNMA----ERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGIL 192
+ M E ++VSWN ++ G+ +SG +E + ++ + ++ + + +L
Sbjct: 200 EVVRILSEMESSGIEANIVSWNGILSGFNRSGYHKEAVVMFQKIHHLGFCPDQVTVSSVL 259
Query: 193 TICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVL 252
E L + R +HG V+ G L + + S+++D Y K G + LF++ + +
Sbjct: 260 PSVGDSEMLNMGRLIHGYVIKQGLLKDKCVISAMIDMYGKSGHVYGIISLFNQFEMMEAG 319
Query: 253 TWTTMVSGYAKLGDMESASKLFNEMPEK----NPVSWTTLIAGYTRNGLGQKALELFTRM 308
++G ++ G ++ A ++F E+ N VSWT++IAG +NG +ALELF M
Sbjct: 320 VCNAYITGLSRNGLVDKALEMFELFKEQTMELNVVSWTSIIAGCAQNGKDIEALELFREM 379
Query: 309 MILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCL 368
+ ++PN T S L AC +I +L HG+ HGF +R + N V S+LIDMY+KCG +
Sbjct: 380 QVAGVKPNHVTIPSMLPACGNIAALGHGRSTHGFAVRVHLLDNVHVGSALIDMYAKCGRI 439
Query: 369 NDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNA 428
N + VF++ K N + WN++++ + HG ++ + +F ++R+ +KPD I+ +L+A
Sbjct: 440 NLSQIVFNMMPTK-NLVCWNSLMNGFSMHGKAKEVMSIFESLMRTRLKPDFISFTSLLSA 498
Query: 429 CTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSY 488
C GL EG YF+ M+ + GI P EH++C++ LL +AG + + +++MP+E DS
Sbjct: 499 CGQVGLTDEGWKYFKMMSEEYGIKPRLEHYSCMVNLLGRAGKLQEAYDLIKEMPFEPDSC 558
Query: 489 LWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLIN 548
+W AL CR+ N+D+ ++L P++ T+ LLS+IY+A G V+ +R +
Sbjct: 559 VWGALLNSCRLQNNVDLAEIAAEKLFHLEPENPGTYVLLSNIYAAKGMWTEVDSIRNKME 618
Query: 549 ERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQMGEDA--PSLD 602
KK SWI+++N+V+ D HP D + +++++ +M + P+LD
Sbjct: 619 SLGLKKNPGCSWIQVKNRVYTLLAGDKSHPQIDQITEKMDEISKEMRKSGHRPNLD 674
Score = 147 bits (370), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 95/419 (22%), Positives = 194/419 (46%), Gaps = 48/419 (11%)
Query: 125 MLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCN 184
+++ Y+N A + ++ + + S++++I K+ + + + + + +
Sbjct: 56 LIASYSNYNCFNDADLVLQSIPDPTIYSFSSLIYALTKAKLFTQSIGVFSRMFSHGLIPD 115
Query: 185 EFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFD 244
+ +C +L K+ +Q+H V+G + + S+ Y +CG + DAR++FD
Sbjct: 116 SHVLPNLFKVCAELSAFKVGKQIHCVSCVSGLDMDAFVQGSMFHMYMRCGRMGDARKVFD 175
Query: 245 ETDARDVLTWTTMVSGYAKLGDMESASKLFNEMP----EKNPVSWTTLIAGYTRNGLGQK 300
+DV+T + ++ YA+ G +E ++ +EM E N VSW +++G+ R+G ++
Sbjct: 176 RMSDKDVVTCSALLCAYARKGCLEEVVRILSEMESSGIEANIVSWNGILSGFNRSGYHKE 235
Query: 301 ALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLID 360
A+ +F ++ L P+Q T SS L + L G+ +HG++I+ + V+S++ID
Sbjct: 236 AVVMFQKIHHLGFCPDQVTVSSVLPSVGDSEMLNMGRLIHGYVIKQGLLKDKCVISAMID 295
Query: 361 MYSKC-------------------------------GCLNDGRQVFDLTDNKE---NSML 386
MY K G ++ ++F+L + N +
Sbjct: 296 MYGKSGHVYGIISLFNQFEMMEAGVCNAYITGLSRNGLVDKALEMFELFKEQTMELNVVS 355
Query: 387 WNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMT 446
W ++I+ Q+G D +A+ LF +M + VKP+ +T+ +L AC + + G + T
Sbjct: 356 WTSIIAGCAQNGKDIEALELFREMQVAGVKPNHVTIPSMLPACGNIAALGHGRS-----T 410
Query: 447 HDLGI----IPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHG 501
H + + N + LI++ A+ G + MP + + WN+L +HG
Sbjct: 411 HGFAVRVHLLDNVHVGSALIDMYAKCGRINLSQIVFNMMPTK-NLVCWNSLMNGFSMHG 468
Score = 89.4 bits (220), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 81/377 (21%), Positives = 161/377 (42%), Gaps = 68/377 (18%)
Query: 204 TRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAK 263
T Q H ++L +G ++ IS+ ++ +Y+ +DA
Sbjct: 34 TTQAHARILKSGAQNDGYISAKLIASYSNYNCFNDA------------------------ 69
Query: 264 LGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSC 323
D+ + +P+ S+++LI T+ L +++ +F+RM + P+ H +
Sbjct: 70 --DL-----VLQSIPDPTIYSFSSLIYALTKAKLFTQSIGVFSRMFSHGLIPDSHVLPNL 122
Query: 324 LCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKEN 383
CA + + K GKQ+H + + V S+ MY +CG + D R+VFD +K+
Sbjct: 123 FKVCAELSAFKVGKQIHCVSCVSGLDMDAFVQGSMFHMYMRCGRMGDARKVFDRMSDKD- 181
Query: 384 SMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFE 443
+ + ++ A + G E+ +R+ +M S ++ + ++ IL+ SG +E + F+
Sbjct: 182 VVTCSALLCAYARKGCLEEVVRILSEMESSGIEANIVSWNGILSGFNRSGYHKEAVVMFQ 241
Query: 444 SMTHDLGIIPNQEHHACLIELLAQAGCSDQL-MNQLEKMPYEHDSYLWNALHGVCRIHGN 502
+ H LG P+Q + +L G S+ L M +L +HG G
Sbjct: 242 KI-HHLGFCPDQ---VTVSSVLPSVGDSEMLNMGRL--------------IHGYVIKQGL 283
Query: 503 IDMGRKVVDQLIDQNPQSSATHGLLS--------------SIYSALGKGRLVEKVRQLIN 548
+ + V+ +ID +S +G++S + + L + LV+K ++
Sbjct: 284 LK-DKCVISAMIDMYGKSGHVYGIISLFNQFEMMEAGVCNAYITGLSRNGLVDKALEMFE 342
Query: 549 --ERQFKKEQAISWIEI 563
+ Q + +SW I
Sbjct: 343 LFKEQTMELNVVSWTSI 359
>sp|Q9LN01|PPR21_ARATH Pentatricopeptide repeat-containing protein At1g08070
OS=Arabidopsis thaliana GN=PCMP-H12 PE=2 SV=1
Length = 741
Score = 334 bits (857), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 190/562 (33%), Positives = 310/562 (55%), Gaps = 38/562 (6%)
Query: 34 SEAISSLDL---LAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFL 90
S+ +S+L L + G+ + T F+L+ CA+SK+ K G+++H H+ L ++
Sbjct: 113 SDPVSALKLYVCMISLGLLPNSYTFPFVLKSCAKSKAFKEGQQIHGHV-LKLGCDLDLYV 171
Query: 91 SNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDV 150
LISMY + G DA KVFDK P +++ SY ++ GYA+ G +++A+ LFD + +DV
Sbjct: 172 HTSLISMYVQNGRLEDAHKVFDKSPHRDVVSYTALIKGYASRGYIENAQKLFDEIPVKDV 231
Query: 151 VSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQ 210
VSWN MI GYA++G +E L+ +K + + ++ +E + +++ C + ++L RQVH
Sbjct: 232 VSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVVSACAQSGSIELGRQVHLW 291
Query: 211 VLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESA 270
+ GF SN+ I ++++D Y+KCGEL E+A
Sbjct: 292 IDDHGFGSNLKIVNALIDLYSKCGEL-------------------------------ETA 320
Query: 271 SKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASI 330
LF +P K+ +SW TLI GYT L ++AL LF M+ PN T S L ACA +
Sbjct: 321 CGLFERLPYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHL 380
Query: 331 VSLKHGKQVHGFLIR--TNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWN 388
++ G+ +H ++ + + + + +SLIDMY+KCG + QVF+ +K S WN
Sbjct: 381 GAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSS-WN 439
Query: 389 TMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHD 448
MI HG + + LF M + ++PD IT +L+AC+HSG++ G F +MT D
Sbjct: 440 AMIFGFAMHGRADASFDLFSRMRKIGIQPDDITFVGLLSACSHSGMLDLGRHIFRTMTQD 499
Query: 449 LGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRK 508
+ P EH+ C+I+LL +G + + M E D +W +L C++HGN+++G
Sbjct: 500 YKMTPKLEHYGCMIDLLGHSGLFKEAEEMINMMEMEPDGVIWCSLLKACKMHGNVELGES 559
Query: 509 VVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVH 568
+ LI P++ ++ LLS+IY++ G+ V K R L+N++ KK S IEI++ VH
Sbjct: 560 FAENLIKIEPENPGSYVLLSNIYASAGRWNEVAKTRALLNDKGMKKVPGCSSIEIDSVVH 619
Query: 569 AFSVSDSLHPMRDVLYSVLEQL 590
F + D HP +Y +LE++
Sbjct: 620 EFIIGDKFHPRNREIYGMLEEM 641
Score = 214 bits (545), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 130/402 (32%), Positives = 215/402 (53%), Gaps = 13/402 (3%)
Query: 135 MKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTI 194
+ +A ++F + E +++ WNTM G+A S LK Y + + N ++F +L
Sbjct: 84 LPYAISVFKTIQEPNLLIWNTMFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFVLKS 143
Query: 195 CVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTW 254
C K + K +Q+HG VL G ++ + +S++ Y + G L DA ++FD++ RDV+++
Sbjct: 144 CAKSKAFKEGQQIHGHVLKLGCDLDLYVHTSLISMYVQNGRLEDAHKVFDKSPHRDVVSY 203
Query: 255 TTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIR 314
T ++ GYA G +E+A KLF+E+P K+ VSW +I+GY G ++ALELF MM +R
Sbjct: 204 TALIKGYASRGYIENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVR 263
Query: 315 PNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQV 374
P++ T + + ACA S++ G+QVH ++ F SN ++++LID+YSKCG L +
Sbjct: 264 PDESTMVTVVSACAQSGSIELGRQVHLWIDDHGFGSNLKIVNALIDLYSKCGELETACGL 323
Query: 375 FDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGL 434
F+ K+ + WNT+I T ++A+ LF +M+RS P+ +T+ IL AC H G
Sbjct: 324 FERLPYKD-VISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGA 382
Query: 435 VQEGLTYFESMTHDL-GIIPNQEHHACLIELLAQAG---CSDQLMNQLEKMPYEHDSY-L 489
+ G + L G+ LI++ A+ G + Q+ N + H S
Sbjct: 383 IDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSI-----LHKSLSS 437
Query: 490 WNALHGVCRIHGNIDMGRKVVDQL--IDQNPQSSATHGLLSS 529
WNA+ +HG D + ++ I P GLLS+
Sbjct: 438 WNAMIFGFAMHGRADASFDLFSRMRKIGIQPDDITFVGLLSA 479
Score = 101 bits (251), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 86/402 (21%), Positives = 170/402 (42%), Gaps = 72/402 (17%)
Query: 31 GQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFL 90
G EA+ + + +R T+ ++ CA+S S++LG++VHL + +
Sbjct: 245 GNYKEALELFKDMMKTNVRPDESTMVTVVSACAQSGSIELGRQVHLWID-DHGFGSNLKI 303
Query: 91 SNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDV 150
N LI +Y KCG A +F+++P K++ S+N ++ GY ++ + K A LF M
Sbjct: 304 VNALIDLYSKCGELETACGLFERLPYKDVISWNTLIGGYTHMNLYKEALLLFQEM----- 358
Query: 151 VSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQ 210
+SG N+ + IL C L + + R +H
Sbjct: 359 ----------LRSGETP----------------NDVTMLSILPACAHLGAIDIGRWIHVY 392
Query: 211 V--LVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDME 268
+ + G + + +S++D YAKCG++ A ++F+ + + +W M+ G+A
Sbjct: 393 IDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIFGFA------ 446
Query: 269 SASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACA 328
+G + +LF+RM + I+P+ TF L AC+
Sbjct: 447 -------------------------MHGRADASFDLFSRMRKIGIQPDDITFVGLLSACS 481
Query: 329 SIVSLKHGKQVHGFLIRTNFRSNTIVM---SSLIDMYSKCGCLNDGRQVFDLTDNKENSM 385
L G+ H F T T + +ID+ G + ++ ++ + + + +
Sbjct: 482 HSGMLDLGR--HIFRTMTQDYKMTPKLEHYGCMIDLLGHSGLFKEAEEMINMMEMEPDGV 539
Query: 386 LWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILN 427
+W +++ A HG E ++++ ++P+ V+L+
Sbjct: 540 IWCSLLKACKMHGNVELGESFAENLIK--IEPENPGSYVLLS 579
>sp|Q56XI1|PPR25_ARATH Pentatricopeptide repeat-containing protein At1g09410
OS=Arabidopsis thaliana GN=PCMP-H18 PE=2 SV=2
Length = 705
Score = 324 bits (831), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 186/562 (33%), Positives = 304/562 (54%), Gaps = 59/562 (10%)
Query: 92 NHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVV 151
N +++ YF DARK+FD++P +N+ S+N ++SGY G + AR +FD M ER+VV
Sbjct: 52 NSMVAGYFANLMPRDARKLFDEMPDRNIISWNGLVSGYMKNGEIDEARKVFDLMPERNVV 111
Query: 152 SWNTMIIGYAKSGAVE--EGLKFYKVLRRFSISCN----EFSFAGILTICVKLEEL---- 201
SW ++ GY +G V+ E L F+K+ + +S F G + KL E+
Sbjct: 112 SWTALVKGYVHNGKVDVAESL-FWKMPEKNKVSWTVMLIGFLQDGRIDDACKLYEMIPDK 170
Query: 202 ---KLTRQVHG-----------QVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETD 247
T +HG ++ +V+ +++V Y + + DAR++FD
Sbjct: 171 DNIARTSMIHGLCKEGRVDEAREIFDEMSERSVITWTTMVTGYGQNNRVDDARKIFDVMP 230
Query: 248 ARDVLTWTTMVSGYAKLGDMESASKLFNEMP----------------------------- 278
+ ++WT+M+ GY + G +E A +LF MP
Sbjct: 231 EKTEVSWTSMLMGYVQNGRIEDAEELFEVMPVKPVIACNAMISGLGQKGEIAKARRVFDS 290
Query: 279 --EKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHG 336
E+N SW T+I + RNG +AL+LF M +RP T S L CAS+ SL HG
Sbjct: 291 MKERNDASWQTVIKIHERNGFELEALDLFILMQKQGVRPTFPTLISILSVCASLASLHHG 350
Query: 337 KQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQ 396
KQVH L+R F + V S L+ MY KCG L + +FD +K + ++WN++IS
Sbjct: 351 KQVHAQLVRCQFDVDVYVASVLMTMYIKCGELVKSKLIFDRFPSK-DIIMWNSIISGYAS 409
Query: 397 HGYDEQAIRLFHDMVRS-SVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQ 455
HG E+A+++F +M S S KP+++T L+AC+++G+V+EGL +ESM G+ P
Sbjct: 410 HGLGEEALKVFCEMPLSGSTKPNEVTFVATLSACSYAGMVEEGLKIYESMESVFGVKPIT 469
Query: 456 EHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLID 515
H+AC++++L +AG ++ M ++ M E D+ +W +L G CR H +D+ +LI+
Sbjct: 470 AHYACMVDMLGRAGRFNEAMEMIDSMTVEPDAAVWGSLLGACRTHSQLDVAEFCAKKLIE 529
Query: 516 QNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSD- 574
P++S T+ LLS++Y++ G+ V ++R+L+ R +K SW E+ENKVHAF+
Sbjct: 530 IEPENSGTYILLSNMYASQGRWADVAELRKLMKTRLVRKSPGCSWTEVENKVHAFTRGGI 589
Query: 575 SLHPMRDVLYSVLEQLAGQMGE 596
+ HP ++ + +L++L G + E
Sbjct: 590 NSHPEQESILKILDELDGLLRE 611
Score = 105 bits (262), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 82/329 (24%), Positives = 147/329 (44%), Gaps = 64/329 (19%)
Query: 123 NNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSIS 182
N ++ + +G + AR LFD+ + + SWN+M+ GY
Sbjct: 21 NVRITHLSRIGKIHEARKLFDSCDSKSISSWNSMVAGY---------------------- 58
Query: 183 CNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRL 242
FA ++ + KL ++ + N++ + +V Y K GE+ +AR++
Sbjct: 59 -----FANLMP----RDARKLFDEMPDR--------NIISWNGLVSGYMKNGEIDEARKV 101
Query: 243 FDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKAL 302
FD R+V++WT +V GY G ++ A LF +MPEKN VSWT ++ G+ ++G A
Sbjct: 102 FDLMPERNVVSWTALVKGYVHNGKVDVAESLFWKMPEKNKVSWTVMLIGFLQDGRIDDAC 161
Query: 303 ELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFL--IRTNF----RSNTIVMS 356
+L+ + P++ + S+ HG G + R F + I +
Sbjct: 162 KLYEMI------PDKDNIAR--------TSMIHGLCKEGRVDEAREIFDEMSERSVITWT 207
Query: 357 SLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVK 416
+++ Y + ++D R++FD+ K + W +M+ Q+G E A LF M VK
Sbjct: 208 TMVTGYGQNNRVDDARKIFDVMPEK-TEVSWTSMLMGYVQNGRIEDAEELFEVM---PVK 263
Query: 417 PDKITLAVILNACTHSGLVQEGLTYFESM 445
P I +++ G + + F+SM
Sbjct: 264 P-VIACNAMISGLGQKGEIAKARRVFDSM 291
Score = 82.0 bits (201), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 75/283 (26%), Positives = 134/283 (47%), Gaps = 27/283 (9%)
Query: 35 EAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHL 94
EA+ L+ ++G+R TL IL CA SL GK+VH L Q ++++ L
Sbjct: 314 EALDLFILMQKQGVRPTFPTLISILSVCASLASLHHGKQVHAQLVRCQFDV-DVYVASVL 372
Query: 95 ISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNM-----AERD 149
++MY KCG V ++ +FD+ P K++ +N+++SGYA+ G+ + A +F M + +
Sbjct: 373 MTMYIKCGELVKSKLIFDRFPSKDIIMWNSIISGYASHGLGEEALKVFCEMPLSGSTKPN 432
Query: 150 VVSWNTMIIGYAKSGAVEEGLKFYKVLRR-FSISCNEFSFAGILTICVKLE------ELK 202
V++ + + +G VEEGLK Y+ + F + +A ++ + + E+
Sbjct: 433 EVTFVATLSACSYAGMVEEGLKIYESMESVFGVKPITAHYACMVDMLGRAGRFNEAMEMI 492
Query: 203 LTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYA 262
+ V V G L + S +D C A++L E + + T+ + + YA
Sbjct: 493 DSMTVEPDAAVWGSLLGACRTHSQLDVAEFC-----AKKLI-EIEPENSGTYILLSNMYA 546
Query: 263 KLGDMESASKLFNEMP----EKNP-VSWTTL---IAGYTRNGL 297
G ++L M K+P SWT + + +TR G+
Sbjct: 547 SQGRWADVAELRKLMKTRLVRKSPGCSWTEVENKVHAFTRGGI 589
>sp|O49287|PP127_ARATH Putative pentatricopeptide repeat-containing protein At1g77010,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-E5 PE=3
SV=1
Length = 695
Score = 324 bits (830), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 172/527 (32%), Positives = 302/527 (57%), Gaps = 3/527 (0%)
Query: 36 AISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLI 95
A +L L + A TL +L+ CAE ++LK GK++H + + + + +++ L+
Sbjct: 171 AEEALRLFKELNFSADAITLTTVLKACAELEALKCGKQIHAQILIGGVECDSK-MNSSLV 229
Query: 96 SMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNT 155
++Y KCG A + ++I + S + ++SGYAN G + +R LFD + R V+ WN+
Sbjct: 230 NVYAKCGDLRMASYMLEQIREPDDHSLSALISGYANCGRVNESRGLFDRKSNRCVILWNS 289
Query: 156 MIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTG 215
MI GY + E L + +R + + + A ++ C+ L L+ +Q+H G
Sbjct: 290 MISGYIANNMKMEALVLFNEMRNETRE-DSRTLAAVINACIGLGFLETGKQMHCHACKFG 348
Query: 216 FLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFN 275
+ ++V++S+++D Y+KCG +A +LF E ++ D + +M+ Y G ++ A ++F
Sbjct: 349 LIDDIVVASTLLDMYSKCGSPMEACKLFSEVESYDTILLNSMIKVYFSCGRIDDAKRVFE 408
Query: 276 EMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKH 335
+ K+ +SW ++ G+++NG + LE F +M L + ++ + SS + ACASI SL+
Sbjct: 409 RIENKSLISWNSMTNGFSQNGCTVETLEYFHQMHKLDLPTDEVSLSSVISACASISSLEL 468
Query: 336 GKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALT 395
G+QV S+ +V SSLID+Y KCG + GR+VFD T K + + WN+MIS
Sbjct: 469 GEQVFARATIVGLDSDQVVSSSLIDLYCKCGFVEHGRRVFD-TMVKSDEVPWNSMISGYA 527
Query: 396 QHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQ 455
+G +AI LF M + ++P +IT V+L AC + GLV+EG FESM D G +P++
Sbjct: 528 TNGQGFEAIDLFKKMSVAGIRPTQITFMVVLTACNYCGLVEEGRKLFESMKVDHGFVPDK 587
Query: 456 EHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLID 515
EH +C+++LLA+AG ++ +N +E+MP++ D +W+++ C +G MG+K +++I+
Sbjct: 588 EHFSCMVDLLARAGYVEEAINLVEEMPFDVDGSMWSSILRGCVANGYKAMGKKAAEKIIE 647
Query: 516 QNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIE 562
P++S + LS+I++ G VR+L+ E K SW +
Sbjct: 648 LEPENSVAYVQLSAIFATSGDWESSALVRKLMRENNVTKNPGSSWTD 694
Score = 204 bits (519), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 132/498 (26%), Positives = 236/498 (47%), Gaps = 69/498 (13%)
Query: 58 ILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVK 117
+LQ C+ L ++ + L + ++NHL+ MY + G AR +FD++P +
Sbjct: 32 LLQSCSSRNRETLWRQTNGLLLKKGFLSSIVIVANHLLQMYSRSGKMGIARNLFDEMPDR 91
Query: 118 NLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAV----------- 166
N FS+N M+ GY N G + FD M ERD SWN ++ G+AK+G +
Sbjct: 92 NYFSWNTMIEGYMNSGEKGTSLRFFDMMPERDGYSWNVVVSGFAKAGELSVARRLFNAMP 151
Query: 167 --------------------EEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQ 206
EE L+ +K L + S + + +L C +LE LK +Q
Sbjct: 152 EKDVVTLNSLLHGYILNGYAEEALRLFKEL---NFSADAITLTTVLKACAELEALKCGKQ 208
Query: 207 VHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGD 266
+H Q+L+ G + ++SS+V+ YAKCG+L A + ++ D + + ++SGYA G
Sbjct: 209 IHAQILIGGVECDSKMNSSLVNVYAKCGDLRMASYMLEQIREPDDHSLSALISGYANCGR 268
Query: 267 MESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCA 326
+ + LF+ + + W ++I+GY N + +AL LF M R + T ++ + A
Sbjct: 269 VNESRGLFDRKSNRCVILWNSMISGYIANNMKMEALVLFNEMRN-ETREDSRTLAAVINA 327
Query: 327 CASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGC------------------- 367
C + L+ GKQ+H + + +V S+L+DMYSKCG
Sbjct: 328 CIGLGFLETGKQMHCHACKFGLIDDIVVASTLLDMYSKCGSPMEACKLFSEVESYDTILL 387
Query: 368 ------------LNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSV 415
++D ++VF+ +NK + + WN+M + +Q+G + + FH M + +
Sbjct: 388 NSMIKVYFSCGRIDDAKRVFERIENK-SLISWNSMTNGFSQNGCTVETLEYFHQMHKLDL 446
Query: 416 KPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLM 475
D+++L+ +++AC ++ G F T +G+ +Q + LI+L + G +
Sbjct: 447 PTDEVSLSSVISACASISSLELGEQVFARATI-VGLDSDQVVSSSLIDLYCKCGFVEHGR 505
Query: 476 NQLEKMPYEHDSYLWNAL 493
+ M + D WN++
Sbjct: 506 RVFDTM-VKSDEVPWNSM 522
Score = 148 bits (373), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 119/442 (26%), Positives = 208/442 (47%), Gaps = 88/442 (19%)
Query: 156 MIIGYAKSGAVEEGLKFY---KVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVL 212
MI+ Y S +FY L+ + C + + +L C L RQ +G +L
Sbjct: 1 MILKYNSS------YRFYLSSSFLQAMEVDCRRY-YVRLLQSCSSRNRETLWRQTNGLLL 53
Query: 213 VTGFLSNVVI-SSSIVDAYAKCGELSDARRLFDETDARDVLTWTTM-------------- 257
GFLS++VI ++ ++ Y++ G++ AR LFDE R+ +W TM
Sbjct: 54 KKGFLSSIVIVANHLLQMYSRSGKMGIARNLFDEMPDRNYFSWNTMIEGYMNSGEKGTSL 113
Query: 258 -----------------VSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQK 300
VSG+AK G++ A +LFN MPEK+ V+ +L+ GY NG ++
Sbjct: 114 RFFDMMPERDGYSWNVVVSGFAKAGELSVARRLFNAMPEKDVVTLNSLLHGYILNGYAEE 173
Query: 301 ALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLID 360
AL LF L + T ++ L ACA + +LK GKQ+H ++ ++ + SSL++
Sbjct: 174 ALRLFKE---LNFSADAITLTTVLKACAELEALKCGKQIHAQILIGGVECDSKMNSSLVN 230
Query: 361 MYSKCGCL-------------------------------NDGRQVFDLTDNKENSMLWNT 389
+Y+KCG L N+ R +FD N+ +LWN+
Sbjct: 231 VYAKCGDLRMASYMLEQIREPDDHSLSALISGYANCGRVNESRGLFDRKSNR-CVILWNS 289
Query: 390 MISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDL 449
MIS + +A+ LF++M R+ + D TLA ++NAC G ++ G
Sbjct: 290 MISGYIANNMKMEALVLFNEM-RNETREDSRTLAAVINACIGLGFLETG-KQMHCHACKF 347
Query: 450 GIIPNQEHHACLIELLAQAGC---SDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMG 506
G+I + + L+++ ++ G + +L +++E +D+ L N++ V G ID
Sbjct: 348 GLIDDIVVASTLLDMYSKCGSPMEACKLFSEVES----YDTILLNSMIKVYFSCGRIDDA 403
Query: 507 RKVVDQLIDQN--PQSSATHGL 526
++V +++ +++ +S T+G
Sbjct: 404 KRVFERIENKSLISWNSMTNGF 425
>sp|Q9LFL5|PP390_ARATH Pentatricopeptide repeat-containing protein At5g16860
OS=Arabidopsis thaliana GN=PCMP-H92 PE=2 SV=1
Length = 850
Score = 318 bits (815), Expect = 7e-86, Method: Compositional matrix adjust.
Identities = 184/584 (31%), Positives = 297/584 (50%), Gaps = 47/584 (8%)
Query: 18 NCLIQSFLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLH 77
N +I+S+ L E S + + G R TL +L CA + LGK++H
Sbjct: 197 NSIIESYAKLGKPKVALEMFSRMT--NEFGCRPDNITLVNVLPPCASLGTHSLGKQLHC- 253
Query: 78 LKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKH 137
+T F+ N L+ MY KCG +A VF + VK++ S+N M++GY+ +G +
Sbjct: 254 FAVTSEMIQNMFVGNCLVDMYAKCGMMDEANTVFSNMSVKDVVSWNAMVAGYSQIGRFED 313
Query: 138 ARNLFDNMAER----DVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILT 193
A LF+ M E DVV+W+ I GYA+ G E L + + I NE + +L+
Sbjct: 314 AVRLFEKMQEEKIKMDVVTWSAAISGYAQRGLGYEALGVCRQMLSSGIKPNEVTLISVLS 373
Query: 194 ICVKLEELKLTRQVHGQVLV-------TGFLSNVVISSSIVDAYAKCGELSDARRLFDET 246
C + L +++H + G ++ + ++D YAKC ++ AR +FD
Sbjct: 374 GCASVGALMHGKEIHCYAIKYPIDLRKNGHGDENMVINQLIDMYAKCKKVDTARAMFDSL 433
Query: 247 DARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFT 306
+ E++ V+WT +I GY+++G KALEL +
Sbjct: 434 SPK-----------------------------ERDVVTWTVMIGGYSQHGDANKALELLS 464
Query: 307 RMM--ILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSS-LIDMYS 363
M + RPN T S L ACAS+ +L+ GKQ+H + +R + + +S+ LIDMY+
Sbjct: 465 EMFEEDCQTRPNAFTISCALVACASLAALRIGKQIHAYALRNQQNAVPLFVSNCLIDMYA 524
Query: 364 KCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLA 423
KCG ++D R VFD K N + W ++++ HGY E+A+ +F +M R K D +TL
Sbjct: 525 KCGSISDARLVFDNMMAK-NEVTWTSLMTGYGMHGYGEEALGIFDEMRRIGFKLDGVTLL 583
Query: 424 VILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPY 483
V+L AC+HSG++ +G+ YF M G+ P EH+ACL++LL +AG + + +E+MP
Sbjct: 584 VVLYACSHSGMIDQGMEYFNRMKTVFGVSPGPEHYACLVDLLGRAGRLNAALRLIEEMPM 643
Query: 484 EHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKV 543
E +W A CRIHG +++G +++ + ++ LLS++Y+ G+ + V ++
Sbjct: 644 EPPPVVWVAFLSCCRIHGKVELGEYAAEKITELASNHDGSYTLLSNLYANAGRWKDVTRI 703
Query: 544 RQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVL 587
R L+ + KK SW+E F V D HP +Y VL
Sbjct: 704 RSLMRHKGVKKRPGCSWVEGIKGTTTFFVGDKTHPHAKEIYQVL 747
Score = 211 bits (536), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 135/480 (28%), Positives = 231/480 (48%), Gaps = 58/480 (12%)
Query: 54 TLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDK 113
T F+ + C E S++ G+ H L L F+ N L++MY +C S DARKVFD+
Sbjct: 129 TFPFVFKACGEISSVRCGESAHA-LSLVTGFISNVFVGNALVAMYSRCRSLSDARKVFDE 187
Query: 114 IPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFY 173
+ V ++ S+N+++ YA LG K A +F M
Sbjct: 188 MSVWDVVSWNSIIESYAKLGKPKVALEMFSRMTN-------------------------- 221
Query: 174 KVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKC 233
F + + +L C L L +Q+H + + + N+ + + +VD YAKC
Sbjct: 222 ----EFGCRPDNITLVNVLPPCASLGTHSLGKQLHCFAVTSEMIQNMFVGNCLVDMYAKC 277
Query: 234 GELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEK----NPVSWTTLI 289
G + +A +F +DV++W MV+GY+++G E A +LF +M E+ + V+W+ I
Sbjct: 278 GMMDEANTVFSNMSVKDVVSWNAMVAGYSQIGRFEDAVRLFEKMQEEKIKMDVVTWSAAI 337
Query: 290 AGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIR--TN 347
+GY + GLG +AL + +M+ I+PN+ T S L CAS+ +L HGK++H + I+ +
Sbjct: 338 SGYAQRGLGYEALGVCRQMLSSGIKPNEVTLISVLSGCASVGALMHGKEIHCYAIKYPID 397
Query: 348 FRSN-----TIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSML-WNTMISALTQHGYDE 401
R N +V++ LIDMY+KC ++ R +FD KE ++ W MI +QHG
Sbjct: 398 LRKNGHGDENMVINQLIDMYAKCKKVDTARAMFDSLSPKERDVVTWTVMIGGYSQHGDAN 457
Query: 402 QAIRLFHDMVRSS--VKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHA 459
+A+ L +M +P+ T++ L AC ++ G H + NQ++
Sbjct: 458 KALELLSEMFEEDCQTRPNAFTISCALVACASLAALRIG-----KQIHAYA-LRNQQNAV 511
Query: 460 ------CLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQL 513
CLI++ A+ G + M +++ W +L +HG + + D++
Sbjct: 512 PLFVSNCLIDMYAKCGSISDARLVFDNMMAKNE-VTWTSLMTGYGMHGYGEEALGIFDEM 570
Score = 170 bits (430), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 127/494 (25%), Positives = 221/494 (44%), Gaps = 69/494 (13%)
Query: 73 RVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYN---NMLSGY 129
+ H ++K++ T ++ I KC + + + K+ + + N +++S Y
Sbjct: 13 KSHQYIKVSLFSTSAPEITPPFIH---KCKTISQVKLIHQKLLSFGILTLNLTSHLISTY 69
Query: 130 ANLGMMKHARNLFDNMAERD--VVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFS 187
++G + HA +L D V WN++I Y +G + L + ++ S + + ++
Sbjct: 70 ISVGCLSHAVSLLRRFPPSDAGVYHWNSLIRSYGDNGCANKCLYLFGLMHSLSWTPDNYT 129
Query: 188 FAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETD 247
F + C ++ ++ H LVTGF+SNV + +++V Y++C LSDAR++FDE
Sbjct: 130 FPFVFKACGEISSVRCGESAHALSLVTGFISNVFVGNALVAMYSRCRSLSDARKVFDEMS 189
Query: 248 ARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTR 307
DV++W +++ YAKLG + ALE+F+R
Sbjct: 190 VWDVVSWNSIIESYAKLGK-------------------------------PKVALEMFSR 218
Query: 308 MM-ILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCG 366
M RP+ T + L CAS+ + GKQ+H F + + N V + L+DMY+KCG
Sbjct: 219 MTNEFGCRPDNITLVNVLPPCASLGTHSLGKQLHCFAVTSEMIQNMFVGNCLVDMYAKCG 278
Query: 367 CLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVIL 426
+++ VF K+ + WN M++ +Q G E A+RLF M +K D +T + +
Sbjct: 279 MMDEANTVFSNMSVKD-VVSWNAMVAGYSQIGRFEDAVRLFEKMQEEKIKMDVVTWSAAI 337
Query: 427 NACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHD 486
+ GL E L M GI PN+ LI +L+ LM+ E Y
Sbjct: 338 SGYAQRGLGYEALGVCRQMLSS-GIKPNE---VTLISVLSGCASVGALMHGKEIHCYAIK 393
Query: 487 SYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQL 546
+ +G HG+ +M V++QLID K + V+ R +
Sbjct: 394 YPIDLRKNG----HGDENM---VINQLIDM-----------------YAKCKKVDTARAM 429
Query: 547 INERQFKKEQAISW 560
+ K+ ++W
Sbjct: 430 FDSLSPKERDVVTW 443
>sp|Q9LNP2|PPR47_ARATH Putative pentatricopeptide repeat-containing protein At1g17630
OS=Arabidopsis thaliana GN=PCMP-E72 PE=3 SV=1
Length = 731
Score = 315 bits (807), Expect = 7e-85, Method: Compositional matrix adjust.
Identities = 177/589 (30%), Positives = 311/589 (52%), Gaps = 14/589 (2%)
Query: 28 ISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPT 87
+S G A+ + QRG+ L IL+ C L + H + K
Sbjct: 134 VSHGLYENALELYRGMRQRGLTGDGYILPLILRACRYLGRFGLCRAFHTQVIQIGLK-EN 192
Query: 88 TFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAE 147
+ N L+++Y K G DA +F ++PV+N S+N M+ G++ + A +F+ M
Sbjct: 193 LHVVNELLTLYPKAGRMGDAYNLFVEMPVRNRMSWNVMIKGFSQEYDCESAVKIFEWMQR 252
Query: 148 R----DVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKL 203
D V+W +++ +++ G E+ LK++ ++R + + + A ++C +LE L +
Sbjct: 253 EEFKPDEVTWTSVLSCHSQCGKFEDVLKYFHLMRMSGNAVSGEALAVFFSVCAELEALSI 312
Query: 204 TRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAK 263
+VHG V+ GF + ++++ Y K G++ DA LF + + + +W ++++ +
Sbjct: 313 AEKVHGYVIKGGFEEYLPSRNALIHVYGKQGKVKDAEHLFRQIRNKGIESWNSLITSFVD 372
Query: 264 LGDMESASKLFNEMPE--------KNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRP 315
G ++ A LF+E+ E N V+WT++I G G G +LE F +M ++
Sbjct: 373 AGKLDEALSLFSELEEMNHVCNVKANVVTWTSVIKGCNVQGRGDDSLEYFRQMQFSKVLA 432
Query: 316 NQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVF 375
N T L CA + +L G+++HG +IRT+ N +V ++L++MY+KCG L++G VF
Sbjct: 433 NSVTICCILSICAELPALNLGREIHGHVIRTSMSENILVQNALVNMYAKCGLLSEGSLVF 492
Query: 376 DLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLV 435
+ +K+ + WN++I HG+ E+A+ +F M+ S PD I L +L+AC+H+GLV
Sbjct: 493 EAIRDKD-LISWNSIIKGYGMHGFAEKALSMFDRMISSGFHPDGIALVAVLSACSHAGLV 551
Query: 436 QEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHG 495
++G F SM+ G+ P QEH+AC+++LL + G + ++ MP E + AL
Sbjct: 552 EKGREIFYSMSKRFGLEPQQEHYACIVDLLGRVGFLKEASEIVKNMPMEPKVCVLGALLN 611
Query: 496 VCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKE 555
CR+H N+D+ + QL P+ + ++ LLS+IYSA G+ VR L ++ KK
Sbjct: 612 SCRMHKNVDIAEGIASQLSVLEPERTGSYMLLSNIYSAGGRWEESANVRALAKKKDLKKV 671
Query: 556 QAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQMGEDAPSLDAD 604
SWIE++ K + FS + + +Y VLE L M + P+ D +
Sbjct: 672 SGSSWIEVKKKKYKFSSGSIVQSEFETIYPVLEDLVSHMLKKGPTHDGN 720
Score = 147 bits (370), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 91/355 (25%), Positives = 174/355 (49%), Gaps = 13/355 (3%)
Query: 124 NMLSGYANLGMMKHARNLFDNMAE---RDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFS 180
N++S YA LG++ ARN+F+ ++ D+ WN+++ G E L+ Y+ +R+
Sbjct: 94 NLISVYARLGLLLDARNVFETVSLVLLSDLRLWNSILKANVSHGLYENALELYRGMRQRG 153
Query: 181 ISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDAR 240
++ + + IL C L L R H QV+ G N+ + + ++ Y K G + DA
Sbjct: 154 LTGDGYILPLILRACRYLGRFGLCRAFHTQVIQIGLKENLHVVNELLTLYPKAGRMGDAY 213
Query: 241 RLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEK----NPVSWTTLIAGYTRNG 296
LF E R+ ++W M+ G+++ D ESA K+F M + + V+WT++++ +++ G
Sbjct: 214 NLFVEMPVRNRMSWNVMIKGFSQEYDCESAVKIFEWMQREEFKPDEVTWTSVLSCHSQCG 273
Query: 297 LGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMS 356
+ L+ F M + + + CA + +L ++VHG++I+ F +
Sbjct: 274 KFEDVLKYFHLMRMSGNAVSGEALAVFFSVCAELEALSIAEKVHGYVIKGGFEEYLPSRN 333
Query: 357 SLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVR---- 412
+LI +Y K G + D +F NK WN++I++ G ++A+ LF ++
Sbjct: 334 ALIHVYGKQGKVKDAEHLFRQIRNKGIES-WNSLITSFVDAGKLDEALSLFSELEEMNHV 392
Query: 413 SSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQ 467
+VK + +T ++ C G + L YF M ++ N C++ + A+
Sbjct: 393 CNVKANVVTWTSVIKGCNVQGRGDDSLEYFRQMQFS-KVLANSVTICCILSICAE 446
>sp|Q9CAA8|PP108_ARATH Putative pentatricopeptide repeat-containing protein At1g68930
OS=Arabidopsis thaliana GN=PCMP-H22 PE=3 SV=1
Length = 743
Score = 314 bits (804), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 176/581 (30%), Positives = 312/581 (53%), Gaps = 38/581 (6%)
Query: 11 NRKNLPNNCLIQSFLSLISKGQLSEAISSLD-LLAQRGIRLPAETLAFILQQCAESKSLK 69
+R + N LI+ + SL G + A+ + + ++ L TL +L+ + + +
Sbjct: 100 DRDGVTWNVLIEGY-SL--SGLVGAAVKAYNTMMRDFSANLTRVTLMTMLKLSSSNGHVS 156
Query: 70 LGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGY 129
LGK++H + + + + L+ MY G DA+KVF + +N YN+++ G
Sbjct: 157 LGKQIHGQV-IKLGFESYLLVGSPLLYMYANVGCISDAKKVFYGLDDRNTVMYNSLMGGL 215
Query: 130 ANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFA 189
GM++ A LF M E+D VSW MI G A++G +E ++ ++ ++ + +++ F
Sbjct: 216 LACGMIEDALQLFRGM-EKDSVSWAAMIKGLAQNGLAKEAIECFREMKVQGLKMDQYPFG 274
Query: 190 GILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDAR 249
+L C L + +Q+H ++ T F ++ + S+++D Y KC L A+ +FD
Sbjct: 275 SVLPACGGLGAINEGKQIHACIIRTNFQDHIYVGSALIDMYCKCKCLHYAKTVFDR---- 330
Query: 250 DVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMM 309
M +KN VSWT ++ GY + G ++A+++F M
Sbjct: 331 ---------------------------MKQKNVVSWTAMVVGYGQTGRAEEAVKIFLDMQ 363
Query: 310 ILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLN 369
I P+ +T + ACA++ SL+ G Q HG I + V +SL+ +Y KCG ++
Sbjct: 364 RSGIDPDHYTLGQAISACANVSSLEEGSQFHGKAITSGLIHYVTVSNSLVTLYGKCGDID 423
Query: 370 DGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNAC 429
D ++F+ N +++ W M+SA Q G + I+LF MV+ +KPD +TL +++AC
Sbjct: 424 DSTRLFNEM-NVRDAVSWTAMVSAYAQFGRAVETIQLFDKMVQHGLKPDGVTLTGVISAC 482
Query: 430 THSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYL 489
+ +GLV++G YF+ MT + GI+P+ H++C+I+L +++G ++ M + MP+ D+
Sbjct: 483 SRAGLVEKGQRYFKLMTSEYGIVPSIGHYSCMIDLFSRSGRLEEAMRFINGMPFPPDAIG 542
Query: 490 WNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINE 549
W L CR GN+++G+ + LI+ +P A + LLSSIY++ GK V ++R+ + E
Sbjct: 543 WTTLLSACRNKGNLEIGKWAAESLIELDPHHPAGYTLLSSIYASKGKWDSVAQLRRGMRE 602
Query: 550 RQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQL 590
+ KKE SWI+ + K+H+FS D P D +Y+ LE+L
Sbjct: 603 KNVKKEPGQSWIKWKGKLHSFSADDESSPYLDQIYAKLEEL 643
Score = 267 bits (682), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 162/476 (34%), Positives = 253/476 (53%), Gaps = 26/476 (5%)
Query: 86 PTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNM 145
P TFL N+++ Y S AR+VFD+IP NLFS+NN+L Y+ G++ + F+ +
Sbjct: 39 PETFLYNNIVHAYALMKSSTYARRVFDRIPQPNLFSWNNLLLAYSKAGLISEMESTFEKL 98
Query: 146 AERDVVSWNTMIIGYAKSGAVEEGLKFYK-VLRRFSISCNEFSFAGILTICVKLEELKLT 204
+RD V+WN +I GY+ SG V +K Y ++R FS + + +L + + L
Sbjct: 99 PDRDGVTWNVLIEGYSLSGLVGAAVKAYNTMMRDFSANLTRVTLMTMLKLSSSNGHVSLG 158
Query: 205 RQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKL 264
+Q+HGQV+ GF S +++ S ++ YA G +SDA+++F D R+ + + +++ G
Sbjct: 159 KQIHGQVIKLGFESYLLVGSPLLYMYANVGCISDAKKVFYGLDDRNTVMYNSLMGGLLAC 218
Query: 265 GDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCL 324
G +E A +LF M EK+ VSW +I G +NGL ++A+E F M + ++ +Q+ F S L
Sbjct: 219 GMIEDALQLFRGM-EKDSVSWAAMIKGLAQNGLAKEAIECFREMKVQGLKMDQYPFGSVL 277
Query: 325 CACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENS 384
AC + ++ GKQ+H +IRTNF+ + V S+LIDMY KC CL+ + VFD K N
Sbjct: 278 PACGGLGAINEGKQIHACIIRTNFQDHIYVGSALIDMYCKCKCLHYAKTVFDRMKQK-NV 336
Query: 385 MLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFES 444
+ W M+ Q G E+A+++F DM RS + PD TL ++AC + ++EG + F
Sbjct: 337 VSWTAMVVGYGQTGRAEEAVKIFLDMQRSGIDPDHYTLGQAISACANVSSLEEG-SQFHG 395
Query: 445 MTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNID 504
G+I L+ L + G D +M D+ W A+ +
Sbjct: 396 KAITSGLIHYVTVSNSLVTLYGKCGDIDDSTRLFNEMNVR-DAVSWTAM-----VSAYAQ 449
Query: 505 MGRKV-VDQLIDQNPQSSATHGL------LSSIYSALGKGRLVEKVRQLINERQFK 553
GR V QL D+ Q HGL L+ + SA + LVEK +R FK
Sbjct: 450 FGRAVETIQLFDKMVQ----HGLKPDGVTLTGVISACSRAGLVEK-----GQRYFK 496
Score = 119 bits (298), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 67/245 (27%), Positives = 128/245 (52%), Gaps = 7/245 (2%)
Query: 202 KLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGY 261
+ + +HG ++ + ++IV AYA + ARR+FD ++ +W ++ Y
Sbjct: 23 RYVKMIHGNIIRALPYPETFLYNNIVHAYALMKSSTYARRVFDRIPQPNLFSWNNLLLAY 82
Query: 262 AKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMI-LRIRPNQHTF 320
+K G + F ++P+++ V+W LI GY+ +GL A++ + MM + T
Sbjct: 83 SKAGLISEMESTFEKLPDRDGVTWNVLIEGYSLSGLVGAAVKAYNTMMRDFSANLTRVTL 142
Query: 321 SSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDN 380
+ L +S + GKQ+HG +I+ F S +V S L+ MY+ GC++D ++VF D+
Sbjct: 143 MTMLKLSSSNGHVSLGKQIHGQVIKLGFESYLLVGSPLLYMYANVGCISDAKKVFYGLDD 202
Query: 381 KENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLT 440
+ N++++N+++ L G E A++LF M + D ++ A ++ +GL +E +
Sbjct: 203 R-NTVMYNSLMGGLLACGMIEDALQLFRGM-----EKDSVSWAAMIKGLAQNGLAKEAIE 256
Query: 441 YFESM 445
F M
Sbjct: 257 CFREM 261
>sp|Q9ZUW3|PP172_ARATH Pentatricopeptide repeat-containing protein At2g27610
OS=Arabidopsis thaliana GN=PCMP-H60 PE=2 SV=1
Length = 868
Score = 314 bits (804), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 176/549 (32%), Positives = 287/549 (52%), Gaps = 74/549 (13%)
Query: 114 IPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFY 173
IPV N ++++ Y G ++ AR LFD + VV+WN+MI GYA +G E L +
Sbjct: 229 IPVSN-----SLINLYLKCGNVRKARILFDKTEVKSVVTWNSMISGYAANGLDLEALGMF 283
Query: 174 KVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFL---------------- 217
+R + +E SFA ++ +C L+EL+ T Q+H V+ GFL
Sbjct: 284 YSMRLNYVRLSESSFASVIKLCANLKELRFTEQLHCSVVKYGFLFDQNIRTALMVAYSKC 343
Query: 218 ----------------SNVVISSSIVDAYAKCGELSDARRLFDETDARDV----LTW--- 254
NVV ++++ + + +A LF E + V T+
Sbjct: 344 TAMLDALRLFKEIGCVGNVVSWTAMISGFLQNDGKEEAVDLFSEMKRKGVRPNEFTYSVI 403
Query: 255 ----------------------------TTMVSGYAKLGDMESASKLFNEMPEKNPVSWT 286
T ++ Y KLG +E A+K+F+ + +K+ V+W+
Sbjct: 404 LTALPVISPSEVHAQVVKTNYERSSTVGTALLDAYVKLGKVEEAAKVFSGIDDKDIVAWS 463
Query: 287 TLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASI-VSLKHGKQVHGFLIR 345
++AGY + G + A+++F + I+PN+ TFSS L CA+ S+ GKQ HGF I+
Sbjct: 464 AMLAGYAQTGETEAAIKMFGELTKGGIKPNEFTFSSILNVCAATNASMGQGKQFHGFAIK 523
Query: 346 TNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIR 405
+ S+ V S+L+ MY+K G + +VF K+ + WN+MIS QHG +A+
Sbjct: 524 SRLDSSLCVSSALLTMYAKKGNIESAEEVFKRQREKD-LVSWNSMISGYAQHGQAMKALD 582
Query: 406 LFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELL 465
+F +M + VK D +T + ACTH+GLV+EG YF+ M D I P +EH++C+++L
Sbjct: 583 VFKEMKKRKVKMDGVTFIGVFAACTHAGLVEEGEKYFDIMVRDCKIAPTKEHNSCMVDLY 642
Query: 466 AQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHG 525
++AG ++ M +E MP S +W + CR+H ++GR +++I P+ SA +
Sbjct: 643 SRAGQLEKAMKVIENMPNPAGSTIWRTILAACRVHKKTELGRLAAEKIIAMKPEDSAAYV 702
Query: 526 LLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYS 585
LLS++Y+ G + KVR+L+NER KKE SWIE++NK ++F D HP++D +Y
Sbjct: 703 LLSNMYAESGDWQERAKVRKLMNERNVKKEPGYSWIEVKNKTYSFLAGDRSHPLKDQIYM 762
Query: 586 VLEQLAGQM 594
LE L+ ++
Sbjct: 763 KLEDLSTRL 771
Score = 166 bits (420), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 126/480 (26%), Positives = 221/480 (46%), Gaps = 84/480 (17%)
Query: 71 GKRVHLHLKLTQRKTPTTF-LSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGY 129
G+ + +H + + T +SN LI++Y KCG+ AR +FDK VK++ ++N+M+SGY
Sbjct: 211 GRGLQVHTVVVKNGLDKTIPVSNSLINLYLKCGNVRKARILFDKTEVKSVVTWNSMISGY 270
Query: 130 ANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFA 189
A G+ A +F +M R + +E SFA
Sbjct: 271 AANGLDLEALGMFYSM-------------------------------RLNYVRLSESSFA 299
Query: 190 GILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETD-A 248
++ +C L+EL+ T Q+H V+ GFL + I ++++ AY+KC + DA RLF E
Sbjct: 300 SVIKLCANLKELRFTEQLHCSVVKYGFLFDQNIRTALMVAYSKCTAMLDALRLFKEIGCV 359
Query: 249 RDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRM 308
+V++WT M+SG+ + E A LF+EM K
Sbjct: 360 GNVVSWTAMISGFLQNDGKEEAVDLFSEMKRKG--------------------------- 392
Query: 309 MILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCL 368
+RPN+ T+S L A I +VH +++TN+ ++ V ++L+D Y K G +
Sbjct: 393 ----VRPNEFTYSVILTALPVISP----SEVHAQVVKTNYERSSTVGTALLDAYVKLGKV 444
Query: 369 NDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNA 428
+ +VF D+K+ + W+ M++ Q G E AI++F ++ + +KP++ T + ILN
Sbjct: 445 EEAAKVFSGIDDKD-IVAWSAMLAGYAQTGETEAAIKMFGELTKGGIKPNEFTFSSILNV 503
Query: 429 CTHSGL-VQEGLTYFESMTHDLGIIPNQEHHAC----LIELLAQAGCSDQLMNQLEKMPY 483
C + + +G + H I + C L+ + A+ G + + ++ K
Sbjct: 504 CAATNASMGQGKQF-----HGFAIKSRLDSSLCVSSALLTMYAKKG-NIESAEEVFKRQR 557
Query: 484 EHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGL-LSSIYSALGKGRLVEK 542
E D WN++ HG K +D + + G+ +++A LVE+
Sbjct: 558 EKDLVSWNSMISGYAQHGQ---AMKALDVFKEMKKRKVKMDGVTFIGVFAACTHAGLVEE 614
Score = 155 bits (393), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 90/305 (29%), Positives = 154/305 (50%), Gaps = 31/305 (10%)
Query: 124 NMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISC 183
+++ Y K R +FD M ER+VV+W T+I GYA++ +E L + ++
Sbjct: 133 SLVDTYMKGSNFKDGRKVFDEMKERNVVTWTTLISGYARNSMNDEVLTLFMRMQNEGTQP 192
Query: 184 NEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLF 243
N F+FA L + + QVH V+ G + +S+S+++ Y KCG + AR LF
Sbjct: 193 NSFTFAAALGVLAEEGVGGRGLQVHTVVVKNGLDKTIPVSNSLINLYLKCGNVRKARILF 252
Query: 244 DETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALE 303
D+T+ + V+TW +M+SGYA NGL +AL
Sbjct: 253 DKTEVKSVVTWNSMISGYAA-------------------------------NGLDLEALG 281
Query: 304 LFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYS 363
+F M + +R ++ +F+S + CA++ L+ +Q+H +++ F + + ++L+ YS
Sbjct: 282 MFYSMRLNYVRLSESSFASVIKLCANLKELRFTEQLHCSVVKYGFLFDQNIRTALMVAYS 341
Query: 364 KCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLA 423
KC + D ++F N + W MIS Q+ E+A+ LF +M R V+P++ T +
Sbjct: 342 KCTAMLDALRLFKEIGCVGNVVSWTAMISGFLQNDGKEEAVDLFSEMKRKGVRPNEFTYS 401
Query: 424 VILNA 428
VIL A
Sbjct: 402 VILTA 406
Score = 148 bits (374), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 87/295 (29%), Positives = 145/295 (49%), Gaps = 32/295 (10%)
Query: 137 HARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICV 196
+A NLFD RD S+ +++ G+++ G +E + + + R + + F+ +L +
Sbjct: 45 NAHNLFDKSPGRDRESYISLLFGFSRDGRTQEAKRLFLNIHRLGMEMDCSIFSSVLKVSA 104
Query: 197 KLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTT 256
L + RQ+H Q + GFL +V + +S+VD Y K D R
Sbjct: 105 TLCDELFGRQLHCQCIKFGFLDDVSVGTSLVDTYMKGSNFKDGR---------------- 148
Query: 257 MVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPN 316
K+F+EM E+N V+WTTLI+GY RN + + L LF RM +PN
Sbjct: 149 ---------------KVFDEMKERNVVTWTTLISGYARNSMNDEVLTLFMRMQNEGTQPN 193
Query: 317 QHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFD 376
TF++ L A G QVH +++ V +SLI++Y KCG + R +FD
Sbjct: 194 SFTFAAALGVLAEEGVGGRGLQVHTVVVKNGLDKTIPVSNSLINLYLKCGNVRKARILFD 253
Query: 377 LTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTH 431
T+ K + + WN+MIS +G D +A+ +F+ M + V+ + + A ++ C +
Sbjct: 254 KTEVK-SVVTWNSMISGYAANGLDLEALGMFYSMRLNYVRLSESSFASVIKLCAN 307
Score = 88.6 bits (218), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 51/171 (29%), Positives = 87/171 (50%), Gaps = 1/171 (0%)
Query: 269 SASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACA 328
+A LF++ P ++ S+ +L+ G++R+G Q+A LF + L + + FSS L A
Sbjct: 45 NAHNLFDKSPGRDRESYISLLFGFSRDGRTQEAKRLFLNIHRLGMEMDCSIFSSVLKVSA 104
Query: 329 SIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWN 388
++ G+Q+H I+ F + V +SL+D Y K DGR+VFD + N + W
Sbjct: 105 TLCDELFGRQLHCQCIKFGFLDDVSVGTSLVDTYMKGSNFKDGRKVFDEMKER-NVVTWT 163
Query: 389 TMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGL 439
T+IS ++ +++ + LF M +P+ T A L G+ GL
Sbjct: 164 TLISGYARNSMNDEVLTLFMRMQNEGTQPNSFTFAAALGVLAEEGVGGRGL 214
>sp|Q9M4P3|PP316_ARATH Pentatricopeptide repeat-containing protein At4g16835,
mitochondrial OS=Arabidopsis thaliana GN=DYW10 PE=2 SV=3
Length = 656
Score = 313 bits (803), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 159/482 (32%), Positives = 261/482 (54%), Gaps = 43/482 (8%)
Query: 105 VDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSG 164
++A ++FD+IP + FSYN MLS Y + A++ FD M +D SWNTMI GYA+ G
Sbjct: 110 MEAHQLFDEIPEPDTFSYNIMLSCYVRNVNFEKAQSFFDRMPFKDAASWNTMITGYARRG 169
Query: 165 AVEEGLK-FYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVIS 223
+E+ + FY ++ + +S N
Sbjct: 170 EMEKARELFYSMMEKNEVSWN--------------------------------------- 190
Query: 224 SSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMP-EKNP 282
+++ Y +CG+L A F R V+ WT M++GY K +E A +F +M KN
Sbjct: 191 -AMISGYIECGDLEKASHFFKVAPVRGVVAWTAMITGYMKAKKVELAEAMFKDMTVNKNL 249
Query: 283 VSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGF 342
V+W +I+GY N + L+LF M+ IRPN SS L C+ + +L+ G+Q+H
Sbjct: 250 VTWNAMISGYVENSRPEDGLKLFRAMLEEGIRPNSSGLSSALLGCSELSALQLGRQIHQI 309
Query: 343 LIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQ 402
+ ++ ++ ++SLI MY KCG L D ++F++ K++ + WN MIS QHG ++
Sbjct: 310 VSKSTLCNDVTALTSLISMYCKCGELGDAWKLFEVM-KKKDVVAWNAMISGYAQHGNADK 368
Query: 403 AIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLI 462
A+ LF +M+ + ++PD IT +L AC H+GLV G+ YFESM D + P +H+ C++
Sbjct: 369 ALCLFREMIDNKIRPDWITFVAVLLACNHAGLVNIGMAYFESMVRDYKVEPQPDHYTCMV 428
Query: 463 ELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSA 522
+LL +AG ++ + + MP+ + ++ L G CR+H N+++ ++L+ N Q++A
Sbjct: 429 DLLGRAGKLEEALKLIRSMPFRPHAAVFGTLLGACRVHKNVELAEFAAEKLLQLNSQNAA 488
Query: 523 THGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDV 582
+ L++IY++ + V +VR+ + E K SWIEI NKVH F SD +HP D
Sbjct: 489 GYVQLANIYASKNRWEDVARVRKRMKESNVVKVPGYSWIEIRNKVHHFRSSDRIHPELDS 548
Query: 583 LY 584
++
Sbjct: 549 IH 550
Score = 129 bits (324), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 94/349 (26%), Positives = 165/349 (47%), Gaps = 41/349 (11%)
Query: 86 PTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNM 145
P TF N ++S Y + + A+ FD++P K+ S+N M++GYA G M+ AR LF +M
Sbjct: 122 PDTFSYNIMLSCYVRNVNFEKAQSFFDRMPFKDAASWNTMITGYARRGEMEKARELFYSM 181
Query: 146 AERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTR 205
E++ VSWN MI GY + G +E+ F+KV + ++ ++T +K ++++L
Sbjct: 182 MEKNEVSWNAMISGYIECGDLEKASHFFKVAPVRGV----VAWTAMITGYMKAKKVELAE 237
Query: 206 Q-----------VHGQVLVTGFLSNVVI------------------SSSIVDAYAKCGEL 236
V +++G++ N SS + A C EL
Sbjct: 238 AMFKDMTVNKNLVTWNAMISGYVENSRPEDGLKLFRAMLEEGIRPNSSGLSSALLGCSEL 297
Query: 237 SD---ARRLFD----ETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLI 289
S R++ T DV T+++S Y K G++ A KLF M +K+ V+W +I
Sbjct: 298 SALQLGRQIHQIVSKSTLCNDVTALTSLISMYCKCGELGDAWKLFEVMKKKDVVAWNAMI 357
Query: 290 AGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRT-NF 348
+GY ++G KAL LF M+ +IRP+ TF + L AC + G ++R
Sbjct: 358 SGYAQHGNADKALCLFREMIDNKIRPDWITFVAVLLACNHAGLVNIGMAYFESMVRDYKV 417
Query: 349 RSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQH 397
+ ++D+ + G L + ++ + ++ ++ T++ A H
Sbjct: 418 EPQPDHYTCMVDLLGRAGKLEEALKLIRSMPFRPHAAVFGTLLGACRVH 466
Score = 72.0 bits (175), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 69/302 (22%), Positives = 140/302 (46%), Gaps = 29/302 (9%)
Query: 5 FSPRGINRKNLPNNCLIQSFLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAE 64
F +N+ + N +I + + + + + + + GIR + L+ L C+E
Sbjct: 240 FKDMTVNKNLVTWNAMISGY---VENSRPEDGLKLFRAMLEEGIRPNSSGLSSALLGCSE 296
Query: 65 SKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNN 124
+L+LG+++H + + T L++ LISMY KCG DA K+F+ + K++ ++N
Sbjct: 297 LSALQLGRQIHQIVSKSTLCNDVTALTS-LISMYCKCGELGDAWKLFEVMKKKDVVAWNA 355
Query: 125 MLSGYANLGMMKHA----RNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYK-VLRRF 179
M+SGYA G A R + DN D +++ +++ +G V G+ +++ ++R +
Sbjct: 356 MISGYAQHGNADKALCLFREMIDNKIRPDWITFVAVLLACNHAGLVNIGMAYFESMVRDY 415
Query: 180 SISCNEFSFAGILTI---CVKLEE-LKLTRQV----HGQVLVTGFLSNVVISSSIVDAYA 231
+ + ++ + KLEE LKL R + H V T ++ + V
Sbjct: 416 KVEPQPDHYTCMVDLLGRAGKLEEALKLIRSMPFRPHAAVFGT------LLGACRVHKNV 469
Query: 232 KCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAG 291
+ E + + L + ++++ + + + YA E +++ M E N V + G
Sbjct: 470 ELAEFAAEKLL--QLNSQNAAGYVQLANIYASKNRWEDVARVRKRMKESNVVK----VPG 523
Query: 292 YT 293
Y+
Sbjct: 524 YS 525
Score = 54.7 bits (130), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 65/343 (18%), Positives = 124/343 (36%), Gaps = 85/343 (24%)
Query: 242 LFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAG---------- 291
L +D + +++ + GD++ A ++F+ M KN ++W +L+ G
Sbjct: 52 LTKPSDQDQIFPLNKIIARCVRSGDIDGALRVFHGMRAKNTITWNSLLIGISKDPSRMME 111
Query: 292 ----------------------YTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACAS 329
Y RN +KA F RM + ++++ + A
Sbjct: 112 AHQLFDEIPEPDTFSYNIMLSCYVRNVNFEKAQSFFDRMPF----KDAASWNTMITGYAR 167
Query: 330 IVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVF-------------- 375
++ ++ L + N + +++I Y +CG L F
Sbjct: 168 RGEMEKARE----LFYSMMEKNEVSWNAMISGYIECGDLEKASHFFKVAPVRGVVAWTAM 223
Query: 376 ------------------DLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKP 417
D+T NK N + WN MIS ++ E ++LF M+ ++P
Sbjct: 224 ITGYMKAKKVELAEAMFKDMTVNK-NLVTWNAMISGYVENSRPEDGLKLFRAMLEEGIRP 282
Query: 418 DKITLAVILNACTHSGLVQEG-----LTYFESMTHDLGIIPNQEHHACLIELLAQAGCSD 472
+ L+ L C+ +Q G + ++ +D+ + + LI + + G
Sbjct: 283 NSSGLSSALLGCSELSALQLGRQIHQIVSKSTLCNDVTALTS------LISMYCKCGELG 336
Query: 473 QLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLID 515
E M + D WNA+ HGN D + ++ID
Sbjct: 337 DAWKLFEVMK-KKDVVAWNAMISGYAQHGNADKALCLFREMID 378
>sp|Q9SZT8|PP354_ARATH Pentatricopeptide repeat-containing protein At4g37380,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H48 PE=3
SV=1
Length = 632
Score = 309 bits (792), Expect = 4e-83, Method: Compositional matrix adjust.
Identities = 169/481 (35%), Positives = 276/481 (57%), Gaps = 11/481 (2%)
Query: 113 KIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKF 172
+ PV NL + YA+ G ++H+ LF + D+ + I + +G ++
Sbjct: 62 RYPVLNL----KLHRAYASHGKIRHSLALFHQTIDPDLFLFTAAINTASINGLKDQAFLL 117
Query: 173 YKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAK 232
Y L I+ NEF+F+ +L C K + +H VL G + +++ +VD YAK
Sbjct: 118 YVQLLSSEINPNEFTFSSLLKSC----STKSGKLIHTHVLKFGLGIDPYVATGLVDVYAK 173
Query: 233 CGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGY 292
G++ A+++FD R +++ T M++ YAK G++E+A LF+ M E++ VSW +I GY
Sbjct: 174 GGDVVSAQKVFDRMPERSLVSSTAMITCYAKQGNVEAARALFDSMCERDIVSWNVMIDGY 233
Query: 293 TRNGLGQKALELFTRMMIL-RIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSN 351
++G AL LF +++ + +P++ T + L AC+ I +L+ G+ +H F+ + R N
Sbjct: 234 AQHGFPNDALMLFQKLLAEGKPKPDEITVVAALSACSQIGALETGRWIHVFVKSSRIRLN 293
Query: 352 TIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMV 411
V + LIDMYSKCG L + VF+ T K+ + WN MI+ HGY + A+RLF++M
Sbjct: 294 VKVCTGLIDMYSKCGSLEEAVLVFNDTPRKD-IVAWNAMIAGYAMHGYSQDALRLFNEMQ 352
Query: 412 R-SSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGC 470
+ ++P IT L AC H+GLV EG+ FESM + GI P EH+ CL+ LL +AG
Sbjct: 353 GITGLQPTDITFIGTLQACAHAGLVNEGIRIFESMGQEYGIKPKIEHYGCLVSLLGRAGQ 412
Query: 471 SDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSI 530
+ ++ M + DS LW+++ G C++HG+ +G+++ + LI N ++S + LLS+I
Sbjct: 413 LKRAYETIKNMNMDADSVLWSSVLGSCKLHGDFVLGKEIAEYLIGLNIKNSGIYVLLSNI 472
Query: 531 YSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQL 590
Y+++G V KVR L+ E+ KE IS IEIENKVH F D H +Y++L ++
Sbjct: 473 YASVGDYEGVAKVRNLMKEKGIVKEPGISTIEIENKVHEFRAGDREHSKSKEIYTMLRKI 532
Query: 591 A 591
+
Sbjct: 533 S 533
Score = 149 bits (376), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 100/348 (28%), Positives = 167/348 (47%), Gaps = 39/348 (11%)
Query: 54 TLAFILQQCAESKSLKLGKRVHLH-LKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFD 112
T + +L+ C S K GK +H H LK P +++ L+ +Y K G V A+KVFD
Sbjct: 132 TFSSLLKSC----STKSGKLIHTHVLKFGLGIDP--YVATGLVDVYAKGGDVVSAQKVFD 185
Query: 113 KIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLK- 171
++P ++L S M++ YA G ++ AR LFD+M ERD+VSWN MI GYA+ G + L
Sbjct: 186 RMPERSLVSSTAMITCYAKQGNVEAARALFDSMCERDIVSWNVMIDGYAQHGFPNDALML 245
Query: 172 FYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYA 231
F K+L +E + L+ C ++ L+ R +H V + NV + + ++D Y+
Sbjct: 246 FQKLLAEGKPKPDEITVVAALSACSQIGALETGRWIHVFVKSSRIRLNVKVCTGLIDMYS 305
Query: 232 KCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAG 291
KCG L +A +F++T +D++ W M++GYA G + A +LFNEM
Sbjct: 306 KCGSLEEAVLVFNDTPRKDIVAWNAMIAGYAMHGYSQDALRLFNEM-------------- 351
Query: 292 YTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRT-NFRS 350
I ++P TF L ACA + G ++ + + +
Sbjct: 352 ----------------QGITGLQPTDITFIGTLQACAHAGLVNEGIRIFESMGQEYGIKP 395
Query: 351 NTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHG 398
L+ + + G L + + +S+LW++++ + HG
Sbjct: 396 KIEHYGCLVSLLGRAGQLKRAYETIKNMNMDADSVLWSSVLGSCKLHG 443
Score = 64.7 bits (156), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 57/251 (22%), Positives = 122/251 (48%), Gaps = 13/251 (5%)
Query: 42 LLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKC 101
LLA+ + T+ L C++ +L+ G+ +H+ +K + R + LI MY KC
Sbjct: 249 LLAEGKPKPDEITVVAALSACSQIGALETGRWIHVFVK-SSRIRLNVKVCTGLIDMYSKC 307
Query: 102 GSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMA-----ERDVVSWNTM 156
GS +A VF+ P K++ ++N M++GYA G + A LF+ M + +++
Sbjct: 308 GSLEEAVLVFNDTPRKDIVAWNAMIAGYAMHGYSQDALRLFNEMQGITGLQPTDITFIGT 367
Query: 157 IIGYAKSGAVEEGLKFYKVL-RRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTG 215
+ A +G V EG++ ++ + + + I + ++++ + +LK + + +
Sbjct: 368 LQACAHAGLVNEGIRIFESMGQEYGIKPKIEHYGCLVSLLGRAGQLK---RAYETIKNMN 424
Query: 216 FLSNVVISSSIVDAYAKCGELSDARRLFD---ETDARDVLTWTTMVSGYAKLGDMESASK 272
++ V+ SS++ + G+ + + + + ++ + + + YA +GD E +K
Sbjct: 425 MDADSVLWSSVLGSCKLHGDFVLGKEIAEYLIGLNIKNSGIYVLLSNIYASVGDYEGVAK 484
Query: 273 LFNEMPEKNPV 283
+ N M EK V
Sbjct: 485 VRNLMKEKGIV 495
>sp|Q9SJZ3|PP169_ARATH Pentatricopeptide repeat-containing protein At2g22410,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-E28 PE=2
SV=1
Length = 681
Score = 309 bits (791), Expect = 5e-83, Method: Compositional matrix adjust.
Identities = 152/473 (32%), Positives = 266/473 (56%), Gaps = 1/473 (0%)
Query: 122 YNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSI 181
+N + +A+ G M++AR +FD RD+VSWN +I GY K G E+ + YK++ +
Sbjct: 194 HNASIHMFASCGDMENARKVFDESPVRDLVSWNCLINGYKKIGEAEKAIYVYKLMESEGV 253
Query: 182 SCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARR 241
++ + G+++ C L +L ++ + V G + + ++++D ++KCG++ +ARR
Sbjct: 254 KPDDVTMIGLVSSCSMLGDLNRGKEFYEYVKENGLRMTIPLVNALMDMFSKCGDIHEARR 313
Query: 242 LFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKA 301
+FD + R +++WTTM+SGYA+ G ++ + KLF++M EK+ V W +I G + GQ A
Sbjct: 314 IFDNLEKRTIVSWTTMISGYARCGLLDVSRKLFDDMEEKDVVLWNAMIGGSVQAKRGQDA 373
Query: 302 LELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDM 361
L LF M +P++ T CL AC+ + +L G +H ++ + + N + +SL+DM
Sbjct: 374 LALFQEMQTSNTKPDEITMIHCLSACSQLGALDVGIWIHRYIEKYSLSLNVALGTSLVDM 433
Query: 362 YSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKIT 421
Y+KCG +++ VF + NS+ + +I L HG AI F++M+ + + PD+IT
Sbjct: 434 YAKCGNISEALSVFHGIQTR-NSLTYTAIIGGLALHGDASTAISYFNEMIDAGIAPDEIT 492
Query: 422 LAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKM 481
+L+AC H G++Q G YF M + P +H++ +++LL +AG ++ +E M
Sbjct: 493 FIGLLSACCHGGMIQTGRDYFSQMKSRFNLNPQLKHYSIMVDLLGRAGLLEEADRLMESM 552
Query: 482 PYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVE 541
P E D+ +W AL CR+HGN+++G K +L++ +P S + LL +Y +
Sbjct: 553 PMEADAAVWGALLFGCRMHGNVELGEKAAKKLLELDPSDSGIYVLLDGMYGEANMWEDAK 612
Query: 542 KVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQM 594
+ R+++NER +K S IE+ V F V D P + +Y L L M
Sbjct: 613 RARRMMNERGVEKIPGCSSIEVNGIVCEFIVRDKSRPESEKIYDRLHCLGRHM 665
Score = 151 bits (381), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 100/382 (26%), Positives = 178/382 (46%), Gaps = 36/382 (9%)
Query: 18 NCLIQSFLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLH 77
NCLI + + G+ +AI L+ G++ T+ ++ C+ L GK + +
Sbjct: 226 NCLINGYKKI---GEAEKAIYVYKLMESEGVKPDDVTMIGLVSSCSMLGDLNRGKEFYEY 282
Query: 78 LKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKH 137
+K + T L N L+ M+ KCG +AR++FD + + + S+ M+SGYA G++
Sbjct: 283 VKENGLRM-TIPLVNALMDMFSKCGDIHEARRIFDNLEKRTIVSWTTMISGYARCGLLDV 341
Query: 138 ARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVK 197
+R LFD+M E+DVV WN MI G ++ ++ L ++ ++ + +E + L+ C +
Sbjct: 342 SRKLFDDMEEKDVVLWNAMIGGSVQAKRGQDALALFQEMQTSNTKPDEITMIHCLSACSQ 401
Query: 198 LEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTM 257
L L + +H + NV + +S+VD YAKCG +S+A +F R+ LT+T +
Sbjct: 402 LGALDVGIWIHRYIEKYSLSLNVALGTSLVDMYAKCGNISEALSVFHGIQTRNSLTYTAI 461
Query: 258 VSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQ 317
+ G A GD +A FNEM + AG I P++
Sbjct: 462 IGGLALHGDASTAISYFNEMID----------AG---------------------IAPDE 490
Query: 318 HTFSSCLCACASIVSLKHGKQVHGFL-IRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFD 376
TF L AC ++ G+ + R N S ++D+ + G L + ++ +
Sbjct: 491 ITFIGLLSACCHGGMIQTGRDYFSQMKSRFNLNPQLKHYSIMVDLLGRAGLLEEADRLME 550
Query: 377 LTDNKENSMLWNTMISALTQHG 398
+ ++ +W ++ HG
Sbjct: 551 SMPMEADAAVWGALLFGCRMHG 572
Score = 130 bits (327), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 105/491 (21%), Positives = 214/491 (43%), Gaps = 84/491 (17%)
Query: 85 TPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNL----FSYNNMLS--GYANLGMMKHA 138
T + L N L+S+ KC + +++ ++ + L F+ + +++ + + ++
Sbjct: 47 THSFVLHNPLLSLLEKCKLLLHLKQIQAQMIINGLILDPFASSRLIAFCALSESRYLDYS 106
Query: 139 RNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNE-----FSFAGILT 193
+ + ++ SWN I G+++S +E YK + R C E F++ +
Sbjct: 107 VKILKGIENPNIFSWNVTIRGFSESENPKESFLLYKQMLRHG--CCESRPDHFTYPVLFK 164
Query: 194 ICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLT 253
+C L L + G VL + ++ + +A CG++ +AR++FDE+ RD+++
Sbjct: 165 VCADLRLSSLGHMILGHVLKLRLELVSHVHNASIHMFASCGDMENARKVFDESPVRDLVS 224
Query: 254 WTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRI 313
W +++GY K+G+ E A ++ M + +
Sbjct: 225 WNCLINGYKKIGEAEKAIYVYKLMESEG-------------------------------V 253
Query: 314 RPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQ 373
+P+ T + +C+ + L GK+ + ++ R ++++L+DM+SKCG +++ R+
Sbjct: 254 KPDDVTMIGLVSSCSMLGDLNRGKEFYEYVKENGLRMTIPLVNALMDMFSKCGDIHEARR 313
Query: 374 VFD----------------------------LTDNKE--NSMLWNTMISALTQHGYDEQA 403
+FD L D+ E + +LWN MI Q + A
Sbjct: 314 IFDNLEKRTIVSWTTMISGYARCGLLDVSRKLFDDMEEKDVVLWNAMIGGSVQAKRGQDA 373
Query: 404 IRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGL---TYFESMTHDLGIIPNQEHHAC 460
+ LF +M S+ KPD+IT+ L+AC+ G + G+ Y E + L +
Sbjct: 374 LALFQEMQTSNTKPDEITMIHCLSACSQLGALDVGIWIHRYIEKYSLSLNVALGTS---- 429
Query: 461 LIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQN--P 518
L+++ A+ G + ++ + +S + A+ G +HG+ +++ID P
Sbjct: 430 LVDMYAKCGNISEALSVFHGIQ-TRNSLTYTAIIGGLALHGDASTAISYFNEMIDAGIAP 488
Query: 519 QSSATHGLLSS 529
GLLS+
Sbjct: 489 DEITFIGLLSA 499
>sp|Q9SX45|PPR75_ARATH Pentatricopeptide repeat-containing protein At1g50270
OS=Arabidopsis thaliana GN=PCMP-E42 PE=2 SV=1
Length = 596
Score = 307 bits (786), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 157/477 (32%), Positives = 255/477 (53%), Gaps = 34/477 (7%)
Query: 120 FSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRF 179
F N+++SGY++ G+ A LFD ++DVV+W MI G+ ++G+ E + ++ +++
Sbjct: 139 FVRNSLISGYSSSGLFDFASRLFDGAEDKDVVTWTAMIDGFVRNGSASEAMVYFVEMKKT 198
Query: 180 SISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLS-NVVISSSIVDAYAKCGELSD 238
++ NE + +L K+E+++ R VHG L TG + +V I SS+VD Y KC D
Sbjct: 199 GVAANEMTVVSVLKAAGKVEDVRFGRSVHGLYLETGRVKCDVFIGSSLVDMYGKCSCYDD 258
Query: 239 ARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLG 298
A K+F+EMP +N V+WT LIAGY ++
Sbjct: 259 -------------------------------AQKVFDEMPSRNVVTWTALIAGYVQSRCF 287
Query: 299 QKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSL 358
K + +F M+ + PN+ T SS L ACA + +L G++VH ++I+ + NT ++L
Sbjct: 288 DKGMLVFEEMLKSDVAPNEKTLSSVLSACAHVGALHRGRRVHCYMIKNSIEINTTAGTTL 347
Query: 359 IDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPD 418
ID+Y KCGCL + VF+ K N W MI+ HGY A LF+ M+ S V P+
Sbjct: 348 IDLYVKCGCLEEAILVFERLHEK-NVYTWTAMINGFAAHGYARDAFDLFYTMLSSHVSPN 406
Query: 419 KITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQL 478
++T +L+AC H GLV+EG F SM + P +H+AC+++L + G ++ +
Sbjct: 407 EVTFMAVLSACAHGGLVEEGRRLFLSMKGRFNMEPKADHYACMVDLFGRKGLLEEAKALI 466
Query: 479 EKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGR 538
E+MP E + +W AL G C +H + ++G+ ++I P S + LL+++YS
Sbjct: 467 ERMPMEPTNVVWGALFGSCLLHKDYELGKYAASRVIKLQPSHSGRYTLLANLYSESQNWD 526
Query: 539 LVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMR-DVLYSVLEQLAGQM 594
V +VR+ + ++Q K SWIE++ K+ F D P+ D LY L+ + QM
Sbjct: 527 EVARVRKQMKDQQVVKSPGFSWIEVKGKLCEFIAFDDKKPLESDDLYKTLDTVGVQM 583
Score = 146 bits (369), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 105/417 (25%), Positives = 188/417 (45%), Gaps = 42/417 (10%)
Query: 135 MKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKF--YKVLRRFSISCNEFSFAGIL 192
++AR L + + W+++I ++ + L F Y+ +RR + + +F +L
Sbjct: 52 FRYARRLLCQLQTLSIQLWDSLIGHFSGGITLNRRLSFLAYRHMRRNGVIPSRHTFPPLL 111
Query: 193 TICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVL 252
KL + Q H ++ G S+ + +S
Sbjct: 112 KAVFKLRDSN-PFQFHAHIVKFGLDSDPFVRNS--------------------------- 143
Query: 253 TWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILR 312
++SGY+ G + AS+LF+ +K+ V+WT +I G+ RNG +A+ F M
Sbjct: 144 ----LISGYSSSGLFDFASRLFDGAEDKDVVTWTAMIDGFVRNGSASEAMVYFVEMKKTG 199
Query: 313 IRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTN-FRSNTIVMSSLIDMYSKCGCLNDG 371
+ N+ T S L A + ++ G+ VHG + T + + + SSL+DMY KC C +D
Sbjct: 200 VAANEMTVVSVLKAAGKVEDVRFGRSVHGLYLETGRVKCDVFIGSSLVDMYGKCSCYDDA 259
Query: 372 RQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTH 431
++VFD ++ N + W +I+ Q ++ + +F +M++S V P++ TL+ +L+AC H
Sbjct: 260 QKVFDEMPSR-NVVTWTALIAGYVQSRCFDKGMLVFEEMLKSDVAPNEKTLSSVLSACAH 318
Query: 432 SGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWN 491
G + G M + I N LI+L + GC ++ + E++ +E + Y W
Sbjct: 319 VGALHRGRRVHCYMIKN-SIEINTTAGTTLIDLYVKCGCLEEAILVFERL-HEKNVYTWT 376
Query: 492 ALHGVCRIHGNIDMGRKVVDQLIDQ-NPQSSATHGLLSSIYSALGKGRLVEKVRQLI 547
A+ HG R D + S ++ SA G LVE+ R+L
Sbjct: 377 AMINGFAAHG---YARDAFDLFYTMLSSHVSPNEVTFMAVLSACAHGGLVEEGRRLF 430
Score = 120 bits (300), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 85/375 (22%), Positives = 164/375 (43%), Gaps = 69/375 (18%)
Query: 27 LISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVH-LHLKLTQRKT 85
+ G SEA+ + + G+ T+ +L+ + + ++ G+ VH L+L+ T R
Sbjct: 179 FVRNGSASEAMVYFVEMKKTGVAANEMTVVSVLKAAGKVEDVRFGRSVHGLYLE-TGRVK 237
Query: 86 PTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNM 145
F+ + L+ MY KC DA+KVF D M
Sbjct: 238 CDVFIGSSLVDMYGKCSCYDDAQKVF-------------------------------DEM 266
Query: 146 AERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTR 205
R+VV+W +I GY +S ++G+ ++ + + ++ NE + + +L+ C + L R
Sbjct: 267 PSRNVVTWTALIAGYVQSRCFDKGMLVFEEMLKSDVAPNEKTLSSVLSACAHVGALHRGR 326
Query: 206 QVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLG 265
+VH ++ N ++++D Y KCG L +A +F+ ++V TWT M++G+A
Sbjct: 327 RVHCYMIKNSIEINTTAGTTLIDLYVKCGCLEEAILVFERLHEKNVYTWTAMINGFAA-- 384
Query: 266 DMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLC 325
GY R+ A +LF M+ + PN+ TF + L
Sbjct: 385 ------------------------HGYARD-----AFDLFYTMLSSHVSPNEVTFMAVLS 415
Query: 326 ACASIVSLKHGKQVHGFLI---RTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKE 382
ACA ++ G+++ FL R N + ++D++ + G L + + + + +
Sbjct: 416 ACAHGGLVEEGRRL--FLSMKGRFNMEPKADHYACMVDLFGRKGLLEEAKALIERMPMEP 473
Query: 383 NSMLWNTMISALTQH 397
+++W + + H
Sbjct: 474 TNVVWGALFGSCLLH 488
>sp|Q8S9M4|PP198_ARATH Pentatricopeptide repeat-containing protein At2g41080
OS=Arabidopsis thaliana GN=PCMP-H29 PE=2 SV=2
Length = 650
Score = 306 bits (785), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 178/572 (31%), Positives = 299/572 (52%), Gaps = 42/572 (7%)
Query: 26 SLISKGQLSEAISS--LDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQR 83
+L SKG L EA L++ + P +Q C +SL GK++H L +
Sbjct: 22 TLCSKGNLREAFQRFRLNIFTNTSLFTP------FIQSCTTRQSLPSGKQLHC-LLVVSG 74
Query: 84 KTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFD 143
+ F+ NHL+SMY K G A V+ ++ KN S N +++GY G + +AR +FD
Sbjct: 75 FSSDKFICNHLMSMYSKLGDFPSAVAVYGRMRKKNYMSSNILINGYVRAGDLVNARKVFD 134
Query: 144 NMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKL 203
M +R + +WN MI G + EEGL ++ + S +E++ + + L + +
Sbjct: 135 EMPDRKLTTWNAMIAGLIQFEFNEEGLSLFREMHGLGFSPDEYTLGSVFSGSAGLRSVSI 194
Query: 204 TRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAK 263
+Q+HG + G ++V++SS+ Y + G+L D
Sbjct: 195 GQQIHGYTIKYGLELDLVVNSSLAHMYMRNGKLQD------------------------- 229
Query: 264 LGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSC 323
G++ + MP +N V+W TLI G +NG + L L+ M I RPN+ TF +
Sbjct: 230 -GEI-----VIRSMPVRNLVAWNTLIMGNAQNGCPETVLYLYKMMKISGCRPNKITFVTV 283
Query: 324 LCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKEN 383
L +C+ + G+Q+H I+ S V+SSLI MYSKCGCL D + F ++ E+
Sbjct: 284 LSSCSDLAIRGQGQQIHAEAIKIGASSVVAVVSSLISMYSKCGCLGDAAKAFSERED-ED 342
Query: 384 SMLWNTMISALTQHGYDEQAIRLFHDMV-RSSVKPDKITLAVILNACTHSGLVQEGLTYF 442
++W++MISA HG ++AI LF+ M +++++ +++ +L AC+HSGL +GL F
Sbjct: 343 EVMWSSMISAYGFHGQGDEAIELFNTMAEQTNMEINEVAFLNLLYACSHSGLKDKGLELF 402
Query: 443 ESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGN 502
+ M G P +H+ C+++LL +AGC DQ + MP + D +W L C IH N
Sbjct: 403 DMMVEKYGFKPGLKHYTCVVDLLGRAGCLDQAEAIIRSMPIKTDIVIWKTLLSACNIHKN 462
Query: 503 IDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIE 562
+M ++V +++ +P SA + LL++++++ + R V +VR+ + ++ KKE ISW E
Sbjct: 463 AEMAQRVFKEILQIDPNDSACYVLLANVHASAKRWRDVSEVRKSMRDKNVKKEAGISWFE 522
Query: 563 IENKVHAFSVSDSLHPMRDVLYSVLEQLAGQM 594
+ +VH F + D +YS L++L +M
Sbjct: 523 HKGEVHQFKMGDRSQSKSKEIYSYLKELTLEM 554
>sp|Q9SIL5|PP165_ARATH Pentatricopeptide repeat-containing protein At2g20540
OS=Arabidopsis thaliana GN=PCMP-E78 PE=2 SV=1
Length = 534
Score = 306 bits (785), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 174/514 (33%), Positives = 280/514 (54%), Gaps = 6/514 (1%)
Query: 90 LSNHLISMYFKCGSDVDARKVFDKIPVKNL----FSYNNMLSGYANLGMMKHARNLFDNM 145
+ N+ I + S + +K+ I + L F M+ + M +A LF+ +
Sbjct: 9 VENYFIPFLQRVKSRNEWKKINASIIIHGLSQSSFMVTKMVDFCDKIEDMDYATRLFNQV 68
Query: 146 AERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISC-NEFSFAGILTICVKLEELKLT 204
+ +V +N++I Y + + ++ YK L R S + F+F + C L L
Sbjct: 69 SNPNVFLYNSIIRAYTHNSLYCDVIRIYKQLLRKSFELPDRFTFPFMFKSCASLGSCYLG 128
Query: 205 RQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKL 264
+QVHG + G +VV ++++D Y K +L DA ++FDE RDV++W +++SGYA+L
Sbjct: 129 KQVHGHLCKFGPRFHVVTENALIDMYMKFDDLVDAHKVFDEMYERDVISWNSLLSGYARL 188
Query: 265 GDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCL 324
G M+ A LF+ M +K VSWT +I+GYT G +A++ F M + I P++ + S L
Sbjct: 189 GQMKKAKGLFHLMLDKTIVSWTAMISGYTGIGCYVEAMDFFREMQLAGIEPDEISLISVL 248
Query: 325 CACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENS 384
+CA + SL+ GK +H + R F T V ++LI+MYSKCG ++ Q+F + K+
Sbjct: 249 PSCAQLGSLELGKWIHLYAERRGFLKQTGVCNALIEMYSKCGVISQAIQLFGQMEGKD-V 307
Query: 385 MLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFES 444
+ W+TMIS HG AI F++M R+ VKP+ IT +L+AC+H G+ QEGL YF+
Sbjct: 308 ISWSTMISGYAYHGNAHGAIETFNEMQRAKVKPNGITFLGLLSACSHVGMWQEGLRYFDM 367
Query: 445 MTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNID 504
M D I P EH+ CLI++LA+AG ++ + + MP + DS +W +L CR GN+D
Sbjct: 368 MRQDYQIEPKIEHYGCLIDVLARAGKLERAVEITKTMPMKPDSKIWGSLLSSCRTPGNLD 427
Query: 505 MGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIE 564
+ +D L++ P+ + LL++IY+ LGK V ++R++I KK S IE+
Sbjct: 428 VALVAMDHLVELEPEDMGNYVLLANIYADLGKWEDVSRLRKMIRNENMKKTPGGSLIEVN 487
Query: 565 NKVHAFSVSDSLHPMRDVLYSVLEQLAGQMGEDA 598
N V F D+ P + VL+ +D
Sbjct: 488 NIVQEFVSGDNSKPFWTEISIVLQLFTSHQDQDV 521
Score = 185 bits (469), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 120/400 (30%), Positives = 199/400 (49%), Gaps = 39/400 (9%)
Query: 4 NFSPRGINRKNLPNNCLIQSFLSLISKGQL-SEAISSLDLLAQRGIRLPAE-TLAFILQQ 61
+++ R N+ + PN L S + + L + I L ++ LP T F+ +
Sbjct: 59 DYATRLFNQVSNPNVFLYNSIIRAYTHNSLYCDVIRIYKQLLRKSFELPDRFTFPFMFKS 118
Query: 62 CAESKSLKLGKRVHLHL-KLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLF 120
CA S LGK+VH HL K R T N LI MY K VDA KVFD++ +++
Sbjct: 119 CASLGSCYLGKQVHGHLCKFGPRFHVVT--ENALIDMYMKFDDLVDAHKVFDEMYERDVI 176
Query: 121 SYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFS 180
S+N++LSGYA LG MK A+ LF M ++ +VSW MI GY G E + F++ ++
Sbjct: 177 SWNSLLSGYARLGQMKKAKGLFHLMLDKTIVSWTAMISGYTGIGCYVEAMDFFREMQLAG 236
Query: 181 ISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDAR 240
I +E S +L C +L L+L + +H GFL + +++++ Y+KCG +S A
Sbjct: 237 IEPDEISLISVLPSCAQLGSLELGKWIHLYAERRGFLKQTGVCNALIEMYSKCGVISQAI 296
Query: 241 RLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQK 300
+LF + + +DV++W+TM+SGYA G+ A + FNEM Q+
Sbjct: 297 QLFGQMEGKDVISWSTMISGYAYHGNAHGAIETFNEM---------------------QR 335
Query: 301 ALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIV--MSSL 358
A +++PN TF L AC+ + + G + ++R +++ + L
Sbjct: 336 A----------KVKPNGITFLGLLSACSHVGMWQEGLRYFD-MMRQDYQIEPKIEHYGCL 384
Query: 359 IDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHG 398
ID+ ++ G L ++ K +S +W +++S+ G
Sbjct: 385 IDVLARAGKLERAVEITKTMPMKPDSKIWGSLLSSCRTPG 424
>sp|Q9SR01|PP212_ARATH Pentatricopeptide repeat-containing protein At3g04750,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-E81 PE=2
SV=1
Length = 661
Score = 306 bits (785), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 165/489 (33%), Positives = 272/489 (55%), Gaps = 10/489 (2%)
Query: 120 FSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRF 179
+ +N+++ Y LG A +F M DV S+N MI+GYAK G E LK Y +
Sbjct: 167 YLWNSLVKFYMELGNFGVAEKVFARMPHPDVSSFNVMIVGYAKQGFSLEALKLYFKMVSD 226
Query: 180 SISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTG--FLSNVVISSSIVDAYAKCGELS 237
I +E++ +L C L +++L + VHG + G + SN+++S++++D Y KC E
Sbjct: 227 GIEPDEYTVLSLLVCCGHLSDIRLGKGVHGWIERRGPVYSSNLILSNALLDMYFKCKESG 286
Query: 238 DARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGL 297
A+R FD +D+ +W TMV G+ +LGDME+A +F++MP+++ VSW +L+ GY++ G
Sbjct: 287 LAKRAFDAMKKKDMRSWNTMVVGFVRLGDMEAAQAVFDQMPKRDLVSWNSLLFGYSKKGC 346
Query: 298 GQKAL-ELFTRMMIL-RIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVM 355
Q+ + ELF M I+ +++P++ T S + A+ L HG+ VHG +IR + + +
Sbjct: 347 DQRTVRELFYEMTIVEKVKPDRVTMVSLISGAANNGELSHGRWVHGLVIRLQLKGDAFLS 406
Query: 356 SSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSV 415
S+LIDMY KCG + VF T +++ LW +MI+ L HG +QA++LF M V
Sbjct: 407 SALIDMYCKCGIIERAFMVFK-TATEKDVALWTSMITGLAFHGNGQQALQLFGRMQEEGV 465
Query: 416 KPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLM 475
P+ +TL +L AC+HSGLV+EGL F M G P EH+ L++LL +AG ++
Sbjct: 466 TPNNVTLLAVLTACSHSGLVEEGLHVFNHMKDKFGFDPETEHYGSLVDLLCRAGRVEEAK 525
Query: 476 NQLE-KMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSAL 534
+ ++ KMP +W ++ CR +I+ + +L+ P+ + LLS+IY+ +
Sbjct: 526 DIVQKKMPMRPSQSMWGSILSACRGGEDIETAELALTELLKLEPEKEGGYVLLSNIYATV 585
Query: 535 GKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSL-HPMRDVLYSVLEQLAGQ 593
G+ +K R+ + R KK S + +H F ++ HP + +L+ L +
Sbjct: 586 GRWGYSDKTREAMENRGVKKTAGYSSVVGVEGLHRFVAAEKQNHPRWTEIKRILQHLYNE 645
Query: 594 MGEDAPSLD 602
M P LD
Sbjct: 646 M---KPKLD 651
Score = 145 bits (365), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 99/367 (26%), Positives = 171/367 (46%), Gaps = 42/367 (11%)
Query: 35 EAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPT----TFL 90
EA+ + GI T+ +L C ++LGK VH +R+ P L
Sbjct: 215 EALKLYFKMVSDGIEPDEYTVLSLLVCCGHLSDIRLGKGVH---GWIERRGPVYSSNLIL 271
Query: 91 SNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDV 150
SN L+ MYFKC A++ FD + K++ S+N M+ G+ LG M+ A+ +FD M +RD+
Sbjct: 272 SNALLDMYFKCKESGLAKRAFDAMKKKDMRSWNTMVVGFVRLGDMEAAQAVFDQMPKRDL 331
Query: 151 VSWNTMIIGYAKSGAVEEGLK--FYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVH 208
VSWN+++ GY+K G + ++ FY++ + + + +++ EL R VH
Sbjct: 332 VSWNSLLFGYSKKGCDQRTVRELFYEMTIVEKVKPDRVTMVSLISGAANNGELSHGRWVH 391
Query: 209 GQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDME 268
G V+ + +SS+++D Y KCG + A +F +DV WT+M++G A G+
Sbjct: 392 GLVIRLQLKGDAFLSSALIDMYCKCGIIERAFMVFKTATEKDVALWTSMITGLAFHGN-- 449
Query: 269 SASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACA 328
GQ+AL+LF RM + PN T + L AC+
Sbjct: 450 -----------------------------GQQALQLFGRMQEEGVTPNNVTLLAVLTACS 480
Query: 329 SIVSLKHGKQVHGFLI-RTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLT-DNKENSML 386
++ G V + + F T SL+D+ + G + + + + + + +
Sbjct: 481 HSGLVEEGLHVFNHMKDKFGFDPETEHYGSLVDLLCRAGRVEEAKDIVQKKMPMRPSQSM 540
Query: 387 WNTMISA 393
W +++SA
Sbjct: 541 WGSILSA 547
>sp|O22137|PP202_ARATH Pentatricopeptide repeat-containing protein At2g45350,
chloroplastic OS=Arabidopsis thaliana GN=CRR4 PE=3 SV=2
Length = 613
Score = 306 bits (784), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 175/532 (32%), Positives = 282/532 (53%), Gaps = 45/532 (8%)
Query: 45 QRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSD 104
+ G+ + +L+ +L+ C+ +K G ++H LK T + FL N LI +Y KCG
Sbjct: 114 ENGVSVDKFSLSLVLKACSRLGFVKGGMQIHGFLKKTGLWS-DLFLQNCLIGLYLKCGCL 172
Query: 105 VDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFD--NMAERDVVSWNTMIIGYAK 162
+R++FD++P ++ SYN+M+ GY G++ AR LFD M ++++SWN+MI GYA+
Sbjct: 173 GLSRQMFDRMPKRDSVSYNSMIDGYVKCGLIVSARELFDLMPMEMKNLISWNSMISGYAQ 232
Query: 163 -SGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVV 221
S V+ K + + +++
Sbjct: 233 TSDGVDIASKLFADMPE---------------------------------------KDLI 253
Query: 222 ISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKN 281
+S++D Y K G + DA+ LFD RDV+TW TM+ GYAKLG + A LF++MP ++
Sbjct: 254 SWNSMIDGYVKHGRIEDAKGLFDVMPRRDVVTWATMIDGYAKLGFVHHAKTLFDQMPHRD 313
Query: 282 PVSWTTLIAGYTRNGLGQKALELFTRM-MILRIRPNQHTFSSCLCACASIVSLKHGKQVH 340
V++ +++AGY +N +ALE+F+ M + P+ T L A A + L +H
Sbjct: 314 VVAYNSMMAGYVQNKYHMEALEIFSDMEKESHLLPDDTTLVIVLPAIAQLGRLSKAIDMH 373
Query: 341 GFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYD 400
+++ F + +LIDMYSKCG + VF+ +NK WN MI L HG
Sbjct: 374 LYIVEKQFYLGGKLGVALIDMYSKCGSIQHAMLVFEGIENKSIDH-WNAMIGGLAIHGLG 432
Query: 401 EQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHAC 460
E A + + R S+KPD IT +LNAC+HSGLV+EGL FE M I P +H+ C
Sbjct: 433 ESAFDMLLQIERLSLKPDDITFVGVLNACSHSGLVKEGLLCFELMRRKHKIEPRLQHYGC 492
Query: 461 LIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQS 520
++++L+++G + N +E+MP E + +W C H + G V LI Q +
Sbjct: 493 MVDILSRSGSIELAKNLIEEMPVEPNDVIWRTFLTACSHHKEFETGELVAKHLILQAGYN 552
Query: 521 SATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSV 572
+++ LLS++Y++ G + V +VR ++ ER+ +K SWIE++ +VH F V
Sbjct: 553 PSSYVLLSNMYASFGMWKDVRRVRTMMKERKIEKIPGCSWIELDGRVHEFFV 604
Score = 127 bits (319), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 100/379 (26%), Positives = 186/379 (49%), Gaps = 34/379 (8%)
Query: 148 RDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQV 207
D WN +I ++ + L ++ +S ++FS + +L C +L +K Q+
Sbjct: 84 EDPFLWNAVIKSHSHGKDPRQALLLLCLMLENGVSVDKFSLSLVLKACSRLGFVKGGMQI 143
Query: 208 HGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDM 267
HG + TG S++ + + ++ Y KCG L +R++FD RD +++ +M+ GY K G +
Sbjct: 144 HGFLKKTGLWSDLFLQNCLIGLYLKCGCLGLSRQMFDRMPKRDSVSYNSMIDGYVKCGLI 203
Query: 268 ESASKLFNEMP--EKNPVSWTTLIAGYTRNGLGQK-ALELFTRMMILRIRPNQHTFSSCL 324
SA +LF+ MP KN +SW ++I+GY + G A +LF M P + L
Sbjct: 204 VSARELFDLMPMEMKNLISWNSMISGYAQTSDGVDIASKLFADM------PEKD-----L 252
Query: 325 CACASIVS--LKHGK-QVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNK 381
+ S++ +KHG+ + L R + + +++ID Y+K G ++ + +FD ++
Sbjct: 253 ISWNSMIDGYVKHGRIEDAKGLFDVMPRRDVVTWATMIDGYAKLGFVHHAKTLFDQMPHR 312
Query: 382 ENSMLWNTMISALTQHGYDEQAIRLFHDMVRSS-VKPDKITLAVILNACTHSGLVQEGLT 440
+ + +N+M++ Q+ Y +A+ +F DM + S + PD TL ++L A G + + +
Sbjct: 313 -DVVAYNSMMAGYVQNKYHMEALEIFSDMEKESHLLPDDTTLVIVLPAIAQLGRLSKAID 371
Query: 441 YFESMTHDLGIIPNQEH-----HACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHG 495
L I+ Q + LI++ ++ G M E + + + WNA+ G
Sbjct: 372 M------HLYIVEKQFYLGGKLGVALIDMYSKCGSIQHAMLVFEGIENKSIDH-WNAMIG 424
Query: 496 VCRIHGNIDMGRKVVDQLI 514
IHG +G D L+
Sbjct: 425 GLAIHG---LGESAFDMLL 440
Score = 73.9 bits (180), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 59/202 (29%), Positives = 99/202 (49%), Gaps = 21/202 (10%)
Query: 206 QVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLG 265
Q+HG+++ TG + N +++ IV A+A +RR + AR V
Sbjct: 30 QIHGRLIKTGIIKNSNLTTRIVLAFAS------SRRPYLADFARCVFH------------ 71
Query: 266 DMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLC 325
+ S F E+ ++P W +I ++ ++AL L M+ + ++ + S L
Sbjct: 72 EYHVCSFSFGEV--EDPFLWNAVIKSHSHGKDPRQALLLLCLMLENGVSVDKFSLSLVLK 129
Query: 326 ACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSM 385
AC+ + +K G Q+HGFL +T S+ + + LI +Y KCGCL RQ+FD K +S+
Sbjct: 130 ACSRLGFVKGGMQIHGFLKKTGLWSDLFLQNCLIGLYLKCGCLGLSRQMFDRMP-KRDSV 188
Query: 386 LWNTMISALTQHGYDEQAIRLF 407
+N+MI + G A LF
Sbjct: 189 SYNSMIDGYVKCGLIVSARELF 210
Score = 48.1 bits (113), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 78/167 (46%), Gaps = 14/167 (8%)
Query: 338 QVHGFLIRTNFRSNTIVMSSLIDMYSK---------CGCLNDGRQVFDLTDNK-ENSMLW 387
Q+HG LI+T N+ + + ++ ++ C+ V + + E+ LW
Sbjct: 30 QIHGRLIKTGIIKNSNLTTRIVLAFASSRRPYLADFARCVFHEYHVCSFSFGEVEDPFLW 89
Query: 388 NTMISALTQHGYD-EQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMT 446
N +I + + HG D QA+ L M+ + V DK +L+++L AC+ G V+ G+
Sbjct: 90 NAVIKSHS-HGKDPRQALLLLCLMLENGVSVDKFSLSLVLKACSRLGFVKGGMQ-IHGFL 147
Query: 447 HDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNAL 493
G+ + CLI L + GC ++MP + DS +N++
Sbjct: 148 KKTGLWSDLFLQNCLIGLYLKCGCLGLSRQMFDRMP-KRDSVSYNSM 193
>sp|Q9C8L6|PPR80_ARATH Pentatricopeptide repeat-containing protein At1g53600,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-E63 PE=2
SV=2
Length = 717
Score = 305 bits (781), Expect = 6e-82, Method: Compositional matrix adjust.
Identities = 162/527 (30%), Positives = 282/527 (53%), Gaps = 37/527 (7%)
Query: 84 KTPTTF----LSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHAR 139
+TP F SN L+S Y + G +A +VF + VK + S ++M+ GY +G + AR
Sbjct: 169 ETPVKFRDSVASNVLLSGYLRAGKWNEAVRVFQGMAVKEVVSCSSMVHGYCKMGRIVDAR 228
Query: 140 NLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRR-FSISCNEFSFAGILTICVKL 198
+LFD M ER+V++W MI GY K+G E+G + +R+ + N + A + C
Sbjct: 229 SLFDRMTERNVITWTAMIDGYFKAGFFEDGFGLFLRMRQEGDVKVNSNTLAVMFKACRDF 288
Query: 199 EELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCG------------------------ 234
+ Q+HG V ++ + +S++ Y+K G
Sbjct: 289 VRYREGSQIHGLVSRMPLEFDLFLGNSLMSMYSKLGYMGEAKAVFGVMKNKDSVSWNSLI 348
Query: 235 -------ELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTT 287
++S+A LF++ +D+++WT M+ G++ G++ +LF MPEK+ ++WT
Sbjct: 349 TGLVQRKQISEAYELFEKMPGKDMVSWTDMIKGFSGKGEISKCVELFGMMPEKDNITWTA 408
Query: 288 LIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTN 347
+I+ + NG ++AL F +M+ + PN +TFSS L A AS+ L G Q+HG +++ N
Sbjct: 409 MISAFVSNGYYEEALCWFHKMLQKEVCPNSYTFSSVLSATASLADLIEGLQIHGRVVKMN 468
Query: 348 FRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLF 407
++ V +SL+ MY KCG ND ++F ++ N + +NTMIS + +G+ ++A++LF
Sbjct: 469 IVNDLSVQNSLVSMYCKCGNTNDAYKIFSCI-SEPNIVSYNTMISGYSYNGFGKKALKLF 527
Query: 408 HDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQ 467
+ S +P+ +T +L+AC H G V G YF+SM I P +H+AC+++LL +
Sbjct: 528 SMLESSGKEPNGVTFLALLSACVHVGYVDLGWKYFKSMKSSYNIEPGPDHYACMVDLLGR 587
Query: 468 AGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLL 527
+G D N + MP + S +W +L + H +D+ +LI+ P S+ + +L
Sbjct: 588 SGLLDDASNLISTMPCKPHSGVWGSLLSASKTHLRVDLAELAAKKLIELEPDSATPYVVL 647
Query: 528 SSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSD 574
S +YS +GK R +++ + ++ KK+ SWI ++ +VH F D
Sbjct: 648 SQLYSIIGKNRDCDRIMNIKKSKRIKKDPGSSWIILKGEVHNFLAGD 694
Score = 154 bits (389), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 135/534 (25%), Positives = 245/534 (45%), Gaps = 65/534 (12%)
Query: 77 HLKLTQR-----KTPTT----FLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLS 127
H +TQ+ +T TT F N IS + + G+ +A +F ++ +++ S+ M+S
Sbjct: 30 HEPITQKTRNFLETTTTSTAIFQCNSQISKHARNGNLQEAEAIFRQMSNRSIVSWIAMIS 89
Query: 128 GYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISC---- 183
YA G M A +FD M R S+N MI K+ + + + + C
Sbjct: 90 AYAENGKMSKAWQVFDEMPVRVTTSYNAMITAMIKNKC--------DLGKAYELFCDIPE 141
Query: 184 -NEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRL 242
N S+A ++T V+ ++ + V + V S+ ++ Y + G+ ++A R+
Sbjct: 142 KNAVSYATMITGFVRAGRFDEAEFLYAETPVK--FRDSVASNVLLSGYLRAGKWNEAVRV 199
Query: 243 FDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKAL 302
F ++V++ ++MV GY K+G + A LF+ M E+N ++WT +I GY + G +
Sbjct: 200 FQGMAVKEVVSCSSMVHGYCKMGRIVDARSLFDRMTERNVITWTAMIDGYFKAGFFEDGF 259
Query: 303 ELFTRM-MILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDM 361
LF RM ++ N +T + AC V + G Q+HG + R + + +SL+ M
Sbjct: 260 GLFLRMRQEGDVKVNSNTLAVMFKACRDFVRYREGSQIHGLVSRMPLEFDLFLGNSLMSM 319
Query: 362 YSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFH-----------DM 410
YSK G + + + VF + NK+ S+ WN++I+ L Q +A LF DM
Sbjct: 320 YSKLGYMGEAKAVFGVMKNKD-SVSWNSLITGLVQRKQISEAYELFEKMPGKDMVSWTDM 378
Query: 411 VRS--------------SVKPDK--ITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPN 454
++ + P+K IT +++A +G +E L +F M + PN
Sbjct: 379 IKGFSGKGEISKCVELFGMMPEKDNITWTAMISAFVSNGYYEEALCWFHKMLQK-EVCPN 437
Query: 455 QEHHACLIELLAQAGCSD-----QLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKV 509
+ + L A A +D Q+ ++ KM +D + N+L + GN + K+
Sbjct: 438 SYTFSSV--LSATASLADLIEGLQIHGRVVKMNIVNDLSVQNSLVSMYCKCGNTNDAYKI 495
Query: 510 VDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEI 563
+ + N S T + S YS G G+ K+ ++ E K+ ++++ +
Sbjct: 496 FSCISEPNIVSYNT---MISGYSYNGFGKKALKLFSML-ESSGKEPNGVTFLAL 545
>sp|Q9SJK9|PP189_ARATH Pentatricopeptide repeat-containing protein At2g36980,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-E73 PE=2
SV=1
Length = 625
Score = 305 bits (781), Expect = 8e-82, Method: Compositional matrix adjust.
Identities = 173/544 (31%), Positives = 281/544 (51%), Gaps = 9/544 (1%)
Query: 58 ILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPV- 116
IL CA ++K G+++ L + + ++N LI MY KC + A KVF +
Sbjct: 76 ILSTCASLGNVKFGRKIQ-SLVIRSGFCASLPVNNSLIDMYGKCSDTLSANKVFRDMCCD 134
Query: 117 -KNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKV 175
+N ++ ++L Y N + A ++F M +R +WN MI G+A G +E L +K
Sbjct: 135 SRNEVTWCSLLFAYMNAEQFEAALDVFVEMPKRVAFAWNIMISGHAHCGKLESCLSLFKE 194
Query: 176 LRRFSISCNEFSFAGILTIC-VKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCG 234
+ + ++F+ ++ C + R VH +L G+ S V +S++ Y K G
Sbjct: 195 MLESEFKPDCYTFSSLMNACSADSSNVVYGRMVHAVMLKNGWSSAVEAKNSVLSFYTKLG 254
Query: 235 ELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTR 294
DA R + + ++W +++ K+G+ E A ++F+ PEKN V+WTT+I GY R
Sbjct: 255 SRDDAMRELESIEVLTQVSWNSIIDACMKIGETEKALEVFHLAPEKNIVTWTTMITGYGR 314
Query: 295 NGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIV 354
NG G++AL F MM + + + + L AC+ + L HGK +HG LI F+ V
Sbjct: 315 NGDGEQALRFFVEMMKSGVDSDHFAYGAVLHACSGLALLGHGKMIHGCLIHCGFQGYAYV 374
Query: 355 MSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSS 414
++L+++Y+KCG + + + F NK+ + WNTM+ A HG +QA++L+ +M+ S
Sbjct: 375 GNALVNLYAKCGDIKEADRAFGDIANKD-LVSWNTMLFAFGVHGLADQALKLYDNMIASG 433
Query: 415 VKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAG----C 470
+KPD +T +L C+HSGLV+EG FESM D I +H C+I++ + G
Sbjct: 434 IKPDNVTFIGLLTTCSHSGLVEEGCMIFESMVKDYRIPLEVDHVTCMIDMFGRGGHLAEA 493
Query: 471 SDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSI 530
D + ++ W L G C H + ++GR+V L P + LLS++
Sbjct: 494 KDLATTYSSLVTDSSNNSSWETLLGACSTHWHTELGREVSKVLKIAEPSEEMSFVLLSNL 553
Query: 531 YSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQL 590
Y + G+ + E VR+ + ER KK SWIE+ N+V F V DS HP + L L L
Sbjct: 554 YCSTGRWKEGEDVRREMVERGMKKTPGCSWIEVGNQVSTFVVGDSSHPRLEELSETLNCL 613
Query: 591 AGQM 594
+M
Sbjct: 614 QHEM 617
Score = 181 bits (458), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 117/440 (26%), Positives = 208/440 (47%), Gaps = 39/440 (8%)
Query: 126 LSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNE 185
++ A G + AR +FD M E D V+WNTM+ Y++ G +E + + LR ++
Sbjct: 11 IASLAKSGRIASARQVFDGMPELDTVAWNTMLTSYSRLGLHQEAIALFTQLRFSDAKPDD 70
Query: 186 FSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDE 245
+SF IL+ C L +K R++ V+ +GF +++ +++S++D Y KC + A ++F +
Sbjct: 71 YSFTAILSTCASLGNVKFGRKIQSLVIRSGFCASLPVNNSLIDMYGKCSDTLSANKVFRD 130
Query: 246 --TDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALE 303
D+R+ +TW +++ Y E+A +F EMP++ +W +I+G+ G + L
Sbjct: 131 MCCDSRNEVTWCSLLFAYMNAEQFEAALDVFVEMPKRVAFAWNIMISGHAHCGKLESCLS 190
Query: 304 LFTRMMILRIRPNQHTFSSCLCACASIVS-LKHGKQVHGFLIRTNFRSNTIVMSSLIDMY 362
LF M+ +P+ +TFSS + AC++ S + +G+ VH +++ + S +S++ Y
Sbjct: 191 LFKEMLESEFKPDCYTFSSLMNACSADSSNVVYGRMVHAVMLKNGWSSAVEAKNSVLSFY 250
Query: 363 SKCG--------------------------CLNDGR-----QVFDLTDNKENSMLWNTMI 391
+K G C+ G +VF L K N + W TMI
Sbjct: 251 TKLGSRDDAMRELESIEVLTQVSWNSIIDACMKIGETEKALEVFHLAPEK-NIVTWTTMI 309
Query: 392 SALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGI 451
+ ++G EQA+R F +M++S V D +L+AC+ L+ G + H G
Sbjct: 310 TGYGRNGDGEQALRFFVEMMKSGVDSDHFAYGAVLHACSGLALLGHGKMIHGCLIH-CGF 368
Query: 452 IPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVD 511
L+ L A+ G + + D WN + +HG D K+ D
Sbjct: 369 QGYAYVGNALVNLYAKCGDIKEADRAFGDIA-NKDLVSWNTMLFAFGVHGLADQALKLYD 427
Query: 512 QLIDQN--PQSSATHGLLSS 529
+I P + GLL++
Sbjct: 428 NMIASGIKPDNVTFIGLLTT 447
Score = 116 bits (291), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 79/299 (26%), Positives = 136/299 (45%), Gaps = 41/299 (13%)
Query: 255 TTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIR 314
T+ ++ AK G + SA ++F+ MPE + V+W T++ Y+R GL Q+A+ LFT++ +
Sbjct: 8 TSKIASLAKSGRIASARQVFDGMPELDTVAWNTMLTSYSRLGLHQEAIALFTQLRFSDAK 67
Query: 315 PNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQV 374
P+ ++F++ L CAS+ ++K G+++ +IR+ F ++ V +SLIDMY KC +V
Sbjct: 68 PDDYSFTAILSTCASLGNVKFGRKIQSLVIRSGFCASLPVNNSLIDMYGKCSDTLSANKV 127
Query: 375 F-DLTDNKEN-------------------------------SMLWNTMISALTQHGYDEQ 402
F D+ + N + WN MIS G E
Sbjct: 128 FRDMCCDSRNEVTWCSLLFAYMNAEQFEAALDVFVEMPKRVAFAWNIMISGHAHCGKLES 187
Query: 403 AIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDL----GIIPNQEHH 458
+ LF +M+ S KPD T + ++NAC+ + M H + G E
Sbjct: 188 CLSLFKEMLESEFKPDCYTFSSLMNACS----ADSSNVVYGRMVHAVMLKNGWSSAVEAK 243
Query: 459 ACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQN 517
++ + G D M +LE + WN++ C G + +V ++N
Sbjct: 244 NSVLSFYTKLGSRDDAMRELESIEV-LTQVSWNSIIDACMKIGETEKALEVFHLAPEKN 301
>sp|Q9LIC3|PP227_ARATH Putative pentatricopeptide repeat-containing protein At3g13770,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H85 PE=3
SV=1
Length = 628
Score = 305 bits (780), Expect = 8e-82, Method: Compositional matrix adjust.
Identities = 176/584 (30%), Positives = 303/584 (51%), Gaps = 72/584 (12%)
Query: 16 PNNCLIQSFL---SLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGK 72
P N ++Q+ L L S G+L EA+ + +L G + +L C + ++L+ G+
Sbjct: 16 PTNYVLQTILPISQLCSNGRLQEALLEMAML---GPEMGFHGYDALLNACLDKRALRDGQ 72
Query: 73 RVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANL 132
RVH H+ + R P T+L L+ Y KC DARKV D+
Sbjct: 73 RVHAHM-IKTRYLPATYLRTRLLIFYGKCDCLEDARKVLDE------------------- 112
Query: 133 GMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGIL 192
M E++VVSW MI Y+++G E L + + R NEF+FA +L
Sbjct: 113 ------------MPEKNVVSWTAMISRYSQTGHSSEALTVFAEMMRSDGKPNEFTFATVL 160
Query: 193 TICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVL 252
T C++ L L +Q+HG ++ + S++ + SS++D YAK
Sbjct: 161 TSCIRASGLGLGKQIHGLIVKWNYDSHIFVGSSLLDMYAKA------------------- 201
Query: 253 TWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILR 312
G ++ A ++F +PE++ VS T +IAGY + GL ++ALE+F R+
Sbjct: 202 ------------GQIKEAREIFECLPERDVVSCTAIIAGYAQLGLDEEALEMFHRLHSEG 249
Query: 313 IRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGR 372
+ PN T++S L A + + L HGKQ H ++R ++ +SLIDMYSKCG L+ R
Sbjct: 250 MSPNYVTYASLLTALSGLALLDHGKQAHCHVLRRELPFYAVLQNSLIDMYSKCGNLSYAR 309
Query: 373 QVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMV-RSSVKPDKITLAVILNACTH 431
++FD + ++ WN M+ ++HG + + LF M VKPD +TL +L+ C+H
Sbjct: 310 RLFDNMPER-TAISWNAMLVGYSKHGLGREVLELFRLMRDEKRVKPDAVTLLAVLSGCSH 368
Query: 432 SGLVQEGLTYFESMTH-DLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLW 490
+ GL F+ M + G P EH+ C++++L +AG D+ +++MP + + +
Sbjct: 369 GRMEDTGLNIFDGMVAGEYGTKPGTEHYGCIVDMLGRAGRIDEAFEFIKRMPSKPTAGVL 428
Query: 491 NALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINER 550
+L G CR+H ++D+G V +LI+ P+++ + +LS++Y++ G+ V VR ++ ++
Sbjct: 429 GSLLGACRVHLSVDIGESVGRRLIEIEPENAGNYVILSNLYASAGRWADVNNVRAMMMQK 488
Query: 551 QFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQM 594
KE SWI+ E +H F +D HP R+ + + +++++ +M
Sbjct: 489 AVTKEPGRSWIQHEQTLHYFHANDRTHPRREEVLAKMKEISIKM 532
Score = 90.5 bits (223), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 61/213 (28%), Positives = 102/213 (47%), Gaps = 13/213 (6%)
Query: 274 FNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSL 333
F+ P + I+ NG Q+AL M +L H + + L AC +L
Sbjct: 12 FSSSPTNYVLQTILPISQLCSNGRLQEAL---LEMAMLGPEMGFHGYDALLNACLDKRAL 68
Query: 334 KHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISA 393
+ G++VH +I+T + T + + L+ Y KC CL D R+V D K N + W MIS
Sbjct: 69 RDGQRVHAHMIKTRYLPATYLRTRLLIFYGKCDCLEDARKVLDEMPEK-NVVSWTAMISR 127
Query: 394 LTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIP 453
+Q G+ +A+ +F +M+RS KP++ T A +L +C + + G H L +
Sbjct: 128 YSQTGHSSEALTVFAEMMRSDGKPNEFTFATVLTSCIRASGLGLG-----KQIHGLIVKW 182
Query: 454 NQEHH----ACLIELLAQAGCSDQLMNQLEKMP 482
N + H + L+++ A+AG + E +P
Sbjct: 183 NYDSHIFVGSSLLDMYAKAGQIKEAREIFECLP 215
>sp|Q9FFG8|PP417_ARATH Pentatricopeptide repeat-containing protein At5g44230
OS=Arabidopsis thaliana GN=PCMP-H17 PE=2 SV=1
Length = 657
Score = 305 bits (780), Expect = 8e-82, Method: Compositional matrix adjust.
Identities = 153/465 (32%), Positives = 266/465 (57%), Gaps = 5/465 (1%)
Query: 134 MMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILT 193
M +AR + + + R+ W +I GYA G +E + Y +R+ I+ F+F+ +L
Sbjct: 98 MDPYARRVIEPVQFRNPFLWTAVIRGYAIEGKFDEAIAMYGCMRKEEITPVSFTFSALLK 157
Query: 194 ICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLT 253
C +++L L RQ H Q V + ++++D Y KC + AR++FDE RDV++
Sbjct: 158 ACGTMKDLNLGRQFHAQTFRLRGFCFVYVGNTMIDMYVKCESIDCARKVFDEMPERDVIS 217
Query: 254 WTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRI 313
WT +++ YA++G+ME A++LF +P K+ V+WT ++ G+ +N Q+ALE F RM I
Sbjct: 218 WTELIAAYARVGNMECAAELFESLPTKDMVAWTAMVTGFAQNAKPQEALEYFDRMEKSGI 277
Query: 314 RPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNF--RSNTIVMSSLIDMYSKCGCLNDG 371
R ++ T + + ACA + + K+ + ++ + + ++ S+LIDMYSKCG + +
Sbjct: 278 RADEVTVAGYISACAQLGASKYADRAVQIAQKSGYSPSDHVVIGSALIDMYSKCGNVEEA 337
Query: 372 RQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMV-RSSVKPDKITLAVILNACT 430
VF ++ N +N +++MI L HG ++A+ LFH MV ++ +KP+ +T L AC+
Sbjct: 338 VNVF-MSMNNKNVFTYSSMILGLATHGRAQEALHLFHYMVTQTEIKPNTVTFVGALMACS 396
Query: 431 HSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLW 490
HSGLV +G F+SM G+ P ++H+ C+++LL + G + + ++ M E +W
Sbjct: 397 HSGLVDQGRQVFDSMYQTFGVQPTRDHYTCMVDLLGRTGRLQEALELIKTMSVEPHGGVW 456
Query: 491 NALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINER 550
AL G CRIH N ++ + L + P + LLS++Y++ G V +VR+LI E+
Sbjct: 457 GALLGACRIHNNPEIAEIAAEHLFELEPDIIGNYILLSNVYASAGDWGGVLRVRKLIKEK 516
Query: 551 QFKKEQAISWIEIEN-KVHAFSVSDSLHPMRDVLYSVLEQLAGQM 594
KK A+SW+ +N ++H F + HPM + + LE+L ++
Sbjct: 517 GLKKTPAVSWVVDKNGQMHKFFPGNLNHPMSNKIQDKLEELVERL 561
Score = 150 bits (380), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 95/378 (25%), Positives = 182/378 (48%), Gaps = 36/378 (9%)
Query: 30 KGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTF 89
+G+ EAI+ + + I + T + +L+ C K L LG++ H R +
Sbjct: 127 EGKFDEAIAMYGCMRKEEITPVSFTFSALLKACGTMKDLNLGRQFHAQ-TFRLRGFCFVY 185
Query: 90 LSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERD 149
+ N +I MY KC S ARKVFD++P +++ S+ +++ YA +G M+ A LF+++ +D
Sbjct: 186 VGNTMIDMYVKCESIDCARKVFDEMPERDVISWTELIAAYARVGNMECAAELFESLPTKD 245
Query: 150 VVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHG 209
+V+W M+ G+A++ +E L+++ + + I +E + AG ++ C +L K +
Sbjct: 246 MVAWTAMVTGFAQNAKPQEALEYFDRMEKSGIRADEVTVAGYISACAQLGASKYADRAVQ 305
Query: 210 QVLVTGF--LSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDM 267
+G+ +VVI S+++D Y+KCG + +A +F + ++V T+++M+ G A
Sbjct: 306 IAQKSGYSPSDHVVIGSALIDMYSKCGNVEEAVNVFMSMNNKNVFTYSSMILGLAT---- 361
Query: 268 ESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMI-LRIRPNQHTFSSCLCA 326
+G Q+AL LF M+ I+PN TF L A
Sbjct: 362 ---------------------------HGRAQEALHLFHYMVTQTEIKPNTVTFVGALMA 394
Query: 327 CASIVSLKHGKQVHGFLIRT-NFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSM 385
C+ + G+QV + +T + + ++D+ + G L + ++ + +
Sbjct: 395 CSHSGLVDQGRQVFDSMYQTFGVQPTRDHYTCMVDLLGRTGRLQEALELIKTMSVEPHGG 454
Query: 386 LWNTMISALTQHGYDEQA 403
+W ++ A H E A
Sbjct: 455 VWGALLGACRIHNNPEIA 472
Score = 47.0 bits (110), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 51/111 (45%), Gaps = 3/111 (2%)
Query: 321 SSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLND--GRQVFDLT 378
SS + ++L KQ+HG ++R + +++ LI +K G D R+V +
Sbjct: 50 SSLISKLDDCINLNQIKQIHGHVLRKGLDQSCYILTKLIRTLTKLGVPMDPYARRVIEPV 109
Query: 379 DNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNAC 429
+ N LW +I G ++AI ++ M + + P T + +L AC
Sbjct: 110 QFR-NPFLWTAVIRGYAIEGKFDEAIAMYGCMRKEEITPVSFTFSALLKAC 159
>sp|Q9LSB8|PP235_ARATH Putative pentatricopeptide repeat-containing protein At3g15930
OS=Arabidopsis thaliana GN=PCMP-E51 PE=3 SV=2
Length = 687
Score = 304 bits (779), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 154/476 (32%), Positives = 264/476 (55%), Gaps = 1/476 (0%)
Query: 118 NLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLR 177
NL+ N ++ Y+ G+M AR +FD + DV SWN MI GY + EE ++ +
Sbjct: 169 NLYVQNALVKMYSLCGLMDMARGVFDRRCKEDVFSWNLMISGYNRMKEYEESIELLVEME 228
Query: 178 RFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELS 237
R +S + +L+ C K+++ L ++VH V ++ + +++V+AYA CGE+
Sbjct: 229 RNLVSPTSVTLLLVLSACSKVKDKDLCKRVHEYVSECKTEPSLRLENALVNAYAACGEMD 288
Query: 238 DARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGL 297
A R+F ARDV++WT++V GY + G+++ A F++MP ++ +SWT +I GY R G
Sbjct: 289 IAVRIFRSMKARDVISWTSIVKGYVERGNLKLARTYFDQMPVRDRISWTIMIDGYLRAGC 348
Query: 298 GQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSS 357
++LE+F M + P++ T S L ACA + SL+ G+ + ++ + +++ +V ++
Sbjct: 349 FNESLEIFREMQSAGMIPDEFTMVSVLTACAHLGSLEIGEWIKTYIDKNKIKNDVVVGNA 408
Query: 358 LIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKP 417
LIDMY KCGC ++VF D ++ W M+ L +G ++AI++F M S++P
Sbjct: 409 LIDMYFKCGCSEKAQKVFHDMDQRDK-FTWTAMVVGLANNGQGQEAIKVFFQMQDMSIQP 467
Query: 418 DKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQ 477
D IT +L+AC HSG+V + +F M D I P+ H+ C++++L +AG +
Sbjct: 468 DDITYLGVLSACNHSGMVDQARKFFAKMRSDHRIEPSLVHYGCMVDMLGRAGLVKEAYEI 527
Query: 478 LEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKG 537
L KMP +S +W AL G R+H + M ++++ P + A + LL +IY+ +
Sbjct: 528 LRKMPMNPNSIVWGALLGASRLHNDEPMAELAAKKILELEPDNGAVYALLCNIYAGCKRW 587
Query: 538 RLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQ 593
+ + +VR+ I + KK S IE+ H F D H + +Y LE+LA +
Sbjct: 588 KDLREVRRKIVDVAIKKTPGFSLIEVNGFAHEFVAGDKSHLQSEEIYMKLEELAQE 643
Score = 153 bits (387), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 96/377 (25%), Positives = 179/377 (47%), Gaps = 38/377 (10%)
Query: 32 QLSEAISSLDLLAQ--RGIRLPAE-TLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTT 88
++ E S++LL + R + P TL +L C++ K L KRVH ++ + + P+
Sbjct: 213 RMKEYEESIELLVEMERNLVSPTSVTLLLVLSACSKVKDKDLCKRVHEYVSECKTE-PSL 271
Query: 89 FLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAER 148
L N L++ Y CG A ++F + +++ S+ +++ GY G +K AR FD M R
Sbjct: 272 RLENALVNAYAACGEMDIAVRIFRSMKARDVISWTSIVKGYVERGNLKLARTYFDQMPVR 331
Query: 149 DVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVH 208
D +SW MI GY ++G E L+ ++ ++ + +EF+ +LT C L L++ +
Sbjct: 332 DRISWTIMIDGYLRAGCFNESLEIFREMQSAGMIPDEFTMVSVLTACAHLGSLEIGEWIK 391
Query: 209 GQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDME 268
+ ++VV+ ++++D Y KCG A+++F + D RD TWT MV G A
Sbjct: 392 TYIDKNKIKNDVVVGNALIDMYFKCGCSEKAQKVFHDMDQRDKFTWTAMVVGLAN----- 446
Query: 269 SASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACA 328
NG GQ+A+++F +M + I+P+ T+ L AC
Sbjct: 447 --------------------------NGQGQEAIKVFFQMQDMSIQPDDITYLGVLSACN 480
Query: 329 SIVSLKHGKQVHGFLIRTNFR--SNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSML 386
+ ++ + R++ R + + ++DM + G + + ++ NS++
Sbjct: 481 HSGMVDQARKFFAKM-RSDHRIEPSLVHYGCMVDMLGRAGLVKEAYEILRKMPMNPNSIV 539
Query: 387 WNTMISALTQHGYDEQA 403
W ++ A H + A
Sbjct: 540 WGALLGASRLHNDEPMA 556
Score = 115 bits (287), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 104/430 (24%), Positives = 197/430 (45%), Gaps = 34/430 (7%)
Query: 133 GMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGIL 192
G + +A LF + E DVV WN MI G++K EG++ Y + + ++ + +F +L
Sbjct: 82 GHVSYAYKLFVKIPEPDVVVWNNMIKGWSKVDCDGEGVRLYLNMLKEGVTPDSHTFPFLL 141
Query: 193 TICVKLE--ELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARD 250
+K + L +++H V+ G SN+ + +++V Y+ CG + AR +FD D
Sbjct: 142 N-GLKRDGGALACGKKLHCHVVKFGLGSNLYVQNALVKMYSLCGLMDMARGVFDRRCKED 200
Query: 251 VLTWTTMVSGYAKLGDMESASKLFNEMPEKN---PVSWTTLIAGYTRNGLGQKAL--ELF 305
V +W M+SGY ++ + E + +L EM E+N P S T L+ + + K L +
Sbjct: 201 VFSWNLMISGYNRMKEYEESIELLVEM-ERNLVSPTSVTLLLVLSACSKVKDKDLCKRVH 259
Query: 306 TRMMILRIRPN---QHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMY 362
+ + P+ ++ + AC + + + R+ + I +S++ Y
Sbjct: 260 EYVSECKTEPSLRLENALVNAYAACGEM-------DIAVRIFRSMKARDVISWTSIVKGY 312
Query: 363 SKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITL 422
+ G L R FD ++ + W MI + G +++ +F +M + + PD+ T+
Sbjct: 313 VERGNLKLARTYFDQMPVRDR-ISWTIMIDGYLRAGCFNESLEIFREMQSAGMIPDEFTM 371
Query: 423 AVILNACTHSGLVQEG---LTYFE--SMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQ 477
+L AC H G ++ G TY + + +D+ ++ N LI++ + GCS++
Sbjct: 372 VSVLTACAHLGSLEIGEWIKTYIDKNKIKNDV-VVGN-----ALIDMYFKCGCSEKAQKV 425
Query: 478 LEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKG 537
M + D + W A+ +G KV Q+ D + Q L + SA
Sbjct: 426 FHDMD-QRDKFTWTAMVVGLANNGQGQEAIKVFFQMQDMSIQPDDITYL--GVLSACNHS 482
Query: 538 RLVEKVRQLI 547
+V++ R+
Sbjct: 483 GMVDQARKFF 492
Score = 98.2 bits (243), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 70/252 (27%), Positives = 118/252 (46%), Gaps = 34/252 (13%)
Query: 180 SISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDA 239
SIS + F IL +C ++ K Q+H Q + G N
Sbjct: 29 SISNDYSRFISILGVCKTTDQFK---QLHSQSITRGVAPNPTFQ---------------- 69
Query: 240 RRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQ 299
++LF + W + + G+ + A KLF ++PE + V W +I G+++
Sbjct: 70 KKLF--------VFWCSRLGGH-----VSYAYKLFVKIPEPDVVVWNNMIKGWSKVDCDG 116
Query: 300 KALELFTRMMILRIRPNQHTFSSCLCACA-SIVSLKHGKQVHGFLIRTNFRSNTIVMSSL 358
+ + L+ M+ + P+ HTF L +L GK++H +++ SN V ++L
Sbjct: 117 EGVRLYLNMLKEGVTPDSHTFPFLLNGLKRDGGALACGKKLHCHVVKFGLGSNLYVQNAL 176
Query: 359 IDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPD 418
+ MYS CG ++ R VFD KE+ WN MIS + E++I L +M R+ V P
Sbjct: 177 VKMYSLCGLMDMARGVFD-RRCKEDVFSWNLMISGYNRMKEYEESIELLVEMERNLVSPT 235
Query: 419 KITLAVILNACT 430
+TL ++L+AC+
Sbjct: 236 SVTLLLVLSACS 247
>sp|Q9FXB9|PPR84_ARATH Pentatricopeptide repeat-containing protein At1g56690,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H69 PE=2
SV=1
Length = 704
Score = 303 bits (775), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 177/575 (30%), Positives = 291/575 (50%), Gaps = 74/575 (12%)
Query: 92 NHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVV 151
N ++S YF G +AR++FD++ +N+ S+N ++SGY M+ ARN+F+ M ER+VV
Sbjct: 52 NSIVSGYFSNGLPKEARQLFDEMSERNVVSWNGLVSGYIKNRMIVEARNVFELMPERNVV 111
Query: 152 SWNTMIIGYAKSGAVEEGLK-FYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQ 210
SW M+ GY + G V E F+++ R NE S+ + + + R+++
Sbjct: 112 SWTAMVKGYMQEGMVGEAESLFWRMPER-----NEVSWTVMFGGLIDDGRIDKARKLYDM 166
Query: 211 VLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLT----------------- 253
+ V +VV S++++ + G + +AR +FDE R+V+T
Sbjct: 167 MPV----KDVVASTNMIGGLCREGRVDEARLIFDEMRERNVVTWTTMITGYRQNNRVDVA 222
Query: 254 --------------WTTMVSGYAKLGDMESASKLFNEMP--------------------- 278
WT+M+ GY G +E A + F MP
Sbjct: 223 RKLFEVMPEKTEVSWTSMLLGYTLSGRIEDAEEFFEVMPMKPVIACNAMIVGFGEVGEIS 282
Query: 279 ----------EKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACA 328
+++ +W +I Y R G +AL+LF +M +RP+ + S L CA
Sbjct: 283 KARRVFDLMEDRDNATWRGMIKAYERKGFELEALDLFAQMQKQGVRPSFPSLISILSVCA 342
Query: 329 SIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWN 388
++ SL++G+QVH L+R F + V S L+ MY KCG L + VFD +K + ++WN
Sbjct: 343 TLASLQYGRQVHAHLVRCQFDDDVYVASVLMTMYVKCGELVKAKLVFDRFSSK-DIIMWN 401
Query: 389 TMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHD 448
++IS HG E+A+++FH+M S P+K+TL IL AC+++G ++EGL FESM
Sbjct: 402 SIISGYASHGLGEEALKIFHEMPSSGTMPNKVTLIAILTACSYAGKLEEGLEIFESMESK 461
Query: 449 LGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRK 508
+ P EH++C +++L +AG D+ M +E M + D+ +W AL G C+ H +D+
Sbjct: 462 FCVTPTVEHYSCTVDMLGRAGQVDKAMELIESMTIKPDATVWGALLGACKTHSRLDLAEV 521
Query: 509 VVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVH 568
+L + P ++ T+ LLSSI ++ K V VR+ + K SWIE+ KVH
Sbjct: 522 AAKKLFENEPDNAGTYVLLSSINASRSKWGDVAVVRKNMRTNNVSKFPGCSWIEVGKKVH 581
Query: 569 AFSVSD-SLHPMRDVLYSVLEQLAGQMGEDAPSLD 602
F+ HP + ++ +LE+ G + E S D
Sbjct: 582 MFTRGGIKNHPEQAMILMMLEKTDGLLREAGYSPD 616
Score = 159 bits (403), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 114/399 (28%), Positives = 195/399 (48%), Gaps = 82/399 (20%)
Query: 72 KRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYAN 131
KR+ L L+ T T T + IS + G +ARK FD + K + S+N+++SGY +
Sbjct: 2 KRLKLILRRTYL-TSTGVNCSFEISRLSRIGKINEARKFFDSLQFKAIGSWNSIVSGYFS 60
Query: 132 LGMMKHARNLFDNMAERDVVSWNTMIIGYAKS--------------------------GA 165
G+ K AR LFD M+ER+VVSWN ++ GY K+ G
Sbjct: 61 NGLPKEARQLFDEMSERNVVSWNGLVSGYIKNRMIVEARNVFELMPERNVVSWTAMVKGY 120
Query: 166 VEEGLK------FYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSN 219
++EG+ F+++ R NE S+ + + + R+++ + V +
Sbjct: 121 MQEGMVGEAESLFWRMPER-----NEVSWTVMFGGLIDDGRIDKARKLYDMMPV----KD 171
Query: 220 VVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPE 279
VV S++++ + G + +AR +FDE R+V+TWTTM++GY + ++ A KLF MPE
Sbjct: 172 VVASTNMIGGLCREGRVDEARLIFDEMRERNVVTWTTMITGYRQNNRVDVARKLFEVMPE 231
Query: 280 KNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQV 339
K VSWT+++ GYT +G + A E F ++ ++P + AC
Sbjct: 232 KTEVSWTSMLLGYTLSGRIEDAEEFFE---VMPMKP--------VIAC------------ 268
Query: 340 HGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGY 399
+++I + + G ++ R+VFDL ++++N+ W MI A + G+
Sbjct: 269 ----------------NAMIVGFGEVGEISKARRVFDLMEDRDNAT-WRGMIKAYERKGF 311
Query: 400 DEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEG 438
+ +A+ LF M + V+P +L IL+ C +Q G
Sbjct: 312 ELEALDLFAQMQKQGVRPSFPSLISILSVCATLASLQYG 350
Score = 79.0 bits (193), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 47/145 (32%), Positives = 82/145 (56%), Gaps = 8/145 (5%)
Query: 37 ISSLDLLAQ---RGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNH 93
+ +LDL AQ +G+R +L IL CA SL+ G++VH HL Q ++++
Sbjct: 313 LEALDLFAQMQKQGVRPSFPSLISILSVCATLASLQYGRQVHAHLVRCQFDD-DVYVASV 371
Query: 94 LISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDV--- 150
L++MY KCG V A+ VFD+ K++ +N+++SGYA+ G+ + A +F M
Sbjct: 372 LMTMYVKCGELVKAKLVFDRFSSKDIIMWNSIISGYASHGLGEEALKIFHEMPSSGTMPN 431
Query: 151 -VSWNTMIIGYAKSGAVEEGLKFYK 174
V+ ++ + +G +EEGL+ ++
Sbjct: 432 KVTLIAILTACSYAGKLEEGLEIFE 456
>sp|Q9LS72|PP261_ARATH Pentatricopeptide repeat-containing protein At3g29230
OS=Arabidopsis thaliana GN=PCMP-E27 PE=2 SV=1
Length = 600
Score = 303 bits (775), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 181/592 (30%), Positives = 297/592 (50%), Gaps = 75/592 (12%)
Query: 3 SNFSPRGINRKNLPNNCLIQSFLSLISK-GQLSEAISSLDLLAQRGIRLPAETLAFILQQ 61
+N + R N+ PN L S + ++ Q +A + + G+ T F+L+
Sbjct: 67 TNLAVRVFNQVQEPNVHLCNSLIRAHAQNSQPYQAFFVFSEMQRFGLFADNFTYPFLLKA 126
Query: 62 CAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFS 121
C+ L + K +H H++ + ++ N LI Y +CG
Sbjct: 127 CSGQSWLPVVKMMHNHIEKLGLSS-DIYVPNALIDCYSRCGG------------------ 167
Query: 122 YNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFY-KVLRRFS 180
LG+ + A LF+ M+ERD VSWN+M+ G K+G + + + + ++ +R
Sbjct: 168 ----------LGV-RDAMKLFEKMSERDTVSWNSMLGGLVKAGELRDARRLFDEMPQRDL 216
Query: 181 ISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDAR 240
IS N +++D YA+C E+S A
Sbjct: 217 ISWN----------------------------------------TMLDGYARCREMSKAF 236
Query: 241 RLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMP--EKNPVSWTTLIAGYTRNGLG 298
LF++ R+ ++W+TMV GY+K GDME A +F++MP KN V+WT +IAGY GL
Sbjct: 237 ELFEKMPERNTVSWSTMVMGYSKAGDMEMARVMFDKMPLPAKNVVTWTIIIAGYAEKGLL 296
Query: 299 QKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSL 358
++A L +M+ ++ + S L AC L G ++H L R+N SN V+++L
Sbjct: 297 KEADRLVDQMVASGLKFDAAAVISILAACTESGLLSLGMRIHSILKRSNLGSNAYVLNAL 356
Query: 359 IDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPD 418
+DMY+KCG L VF+ K++ + WNTM+ L HG+ ++AI LF M R ++PD
Sbjct: 357 LDMYAKCGNLKKAFDVFNDIP-KKDLVSWNTMLHGLGVHGHGKEAIELFSRMRREGIRPD 415
Query: 419 KITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQL 478
K+T +L +C H+GL+ EG+ YF SM ++P EH+ CL++LL + G + + +
Sbjct: 416 KVTFIAVLCSCNHAGLIDEGIDYFYSMEKVYDLVPQVEHYGCLVDLLGRVGRLKEAIKVV 475
Query: 479 EKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGR 538
+ MP E + +W AL G CR+H +D+ ++V+D L+ +P + LLS+IY+A
Sbjct: 476 QTMPMEPNVVIWGALLGACRMHNEVDIAKEVLDNLVKLDPCDPGNYSLLSNIYAAAEDWE 535
Query: 539 LVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQL 590
V +R + +K S +E+E+ +H F+V D HP D +Y +L L
Sbjct: 536 GVADIRSKMKSMGVEKPSGASSVELEDGIHEFTVFDKSHPKSDQIYQMLGSL 587
Score = 68.6 bits (166), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 64/290 (22%), Positives = 125/290 (43%), Gaps = 17/290 (5%)
Query: 232 KCGELSDARRLFDETDAR----DVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTT 287
KC L+ ++L + R D+ ++S + A ++FN++ E N +
Sbjct: 28 KCANLNQVKQLHAQIIRRNLHEDLHIAPKLISALSLCRQTNLAVRVFNQVQEPNVHLCNS 87
Query: 288 LIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTN 347
LI + +N +A +F+ M + + T+ L AC+ L K +H + +
Sbjct: 88 LIRAHAQNSQPYQAFFVFSEMQRFGLFADNFTYPFLLKACSGQSWLPVVKMMHNHIEKLG 147
Query: 348 FRSNTIVMSSLIDMYSKCGCLN--DGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIR 405
S+ V ++LID YS+CG L D ++F+ ++ ++ WN+M+ L + G A R
Sbjct: 148 LSSDIYVPNALIDCYSRCGGLGVRDAMKLFEKMSERD-TVSWNSMLGGLVKAGELRDARR 206
Query: 406 LFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELL 465
LF +M + D I+ +L+ + + FE M N + ++
Sbjct: 207 LFDEMPQR----DLISWNTMLDGYARCREMSKAFELFEKMPER-----NTVSWSTMVMGY 257
Query: 466 AQAGCSDQLMNQLEKMPYEHDSYL-WNALHGVCRIHGNIDMGRKVVDQLI 514
++AG + +KMP + + W + G + ++VDQ++
Sbjct: 258 SKAGDMEMARVMFDKMPLPAKNVVTWTIIIAGYAEKGLLKEADRLVDQMV 307
>sp|Q9FIF7|PP435_ARATH Putative pentatricopeptide repeat-containing protein At5g59200,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-E41 PE=3
SV=1
Length = 544
Score = 302 bits (774), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 169/521 (32%), Positives = 289/521 (55%), Gaps = 25/521 (4%)
Query: 78 LKLTQRKTPTTFLSN-----HLISMYFK---CGSDVDARKVFDKIPVKNLFSYNNMLSGY 129
L+L++RKT + L + H+ S++ K D DA VF+ I V
Sbjct: 24 LRLSRRKTLISVLRSCKNIAHVPSIHAKIIRTFHDQDAFVVFELIRV------------C 71
Query: 130 ANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFA 189
+ L + +A ++F ++ +V + MI G+ SG +G+ Y + S+ + +
Sbjct: 72 STLDSVDYAYDVFSYVSNPNVYLYTAMIDGFVSSGRSADGVSLYHRMIHNSVLPDNYVIT 131
Query: 190 GILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDAR 249
+L C +LK+ R++H QVL GF S+ + +++ Y K GEL +A+++FDE R
Sbjct: 132 SVLKAC----DLKVCREIHAQVLKLGFGSSRSVGLKMMEIYGKSGELVNAKKMFDEMPDR 187
Query: 250 DVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMM 309
D + T M++ Y++ G ++ A +LF ++ K+ V WT +I G RN KALELF M
Sbjct: 188 DHVAATVMINCYSECGFIKEALELFQDVKIKDTVCWTAMIDGLVRNKEMNKALELFREMQ 247
Query: 310 ILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLN 369
+ + N+ T L AC+ + +L+ G+ VH F+ + V ++LI+MYS+CG +N
Sbjct: 248 MENVSANEFTAVCVLSACSDLGALELGRWVHSFVENQRMELSNFVGNALINMYSRCGDIN 307
Query: 370 DGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNAC 429
+ R+VF + +K+ + +NTMIS L HG +AI F DMV +P+++TL +LNAC
Sbjct: 308 EARRVFRVMRDKD-VISYNTMISGLAMHGASVEAINEFRDMVNRGFRPNQVTLVALLNAC 366
Query: 430 THSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYL 489
+H GL+ GL F SM + P EH+ C+++LL + G ++ +E +P E D +
Sbjct: 367 SHGGLLDIGLEVFNSMKRVFNVEPQIEHYGCIVDLLGRVGRLEEAYRFIENIPIEPDHIM 426
Query: 490 WNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINE 549
L C+IHGN+++G K+ +L + S T+ LLS++Y++ GK + ++R+ + +
Sbjct: 427 LGTLLSACKIHGNMELGEKIAKRLFESENPDSGTYVLLSNLYASSGKWKESTEIRESMRD 486
Query: 550 RQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQL 590
+KE S IE++N++H F V D HP ++ +Y L++L
Sbjct: 487 SGIEKEPGCSTIEVDNQIHEFLVGDIAHPHKEAIYQRLQEL 527
Score = 70.1 bits (170), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 64/275 (23%), Positives = 130/275 (47%), Gaps = 14/275 (5%)
Query: 19 CLIQSFLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHL 78
C L+ ++++A+ + + T +L C++ +L+LG+ VH +
Sbjct: 222 CWTAMIDGLVRNKEMNKALELFREMQMENVSANEFTAVCVLSACSDLGALELGRWVHSFV 281
Query: 79 KLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHA 138
+ QR + F+ N LI+MY +CG +AR+VF + K++ SYN M+SG A G A
Sbjct: 282 E-NQRMELSNFVGNALINMYSRCGDINEARRVFRVMRDKDVISYNTMISGLAMHGASVEA 340
Query: 139 RNLFDNMAER----DVVSWNTMIIGYAKSGAVEEGLKFYKVLRR-FSISCNEFSFAGILT 193
N F +M R + V+ ++ + G ++ GL+ + ++R F++ + I+
Sbjct: 341 INEFRDMVNRGFRPNQVTLVALLNACSHGGLLDIGLEVFNSMKRVFNVEPQIEHYGCIVD 400
Query: 194 ICVKLEELKLTRQVHGQVLVTG--FLSNVVISSSIVDAYAKCGELSDARRLFDETDARDV 251
+ ++ L+ + + + + ++S+ + + GE A+RLF E++ D
Sbjct: 401 LLGRVGRLEEAYRFIENIPIEPDHIMLGTLLSACKIHGNMELGE-KIAKRLF-ESENPDS 458
Query: 252 LTWTTMVSGYAKLGDMESASKLFNEMP----EKNP 282
T+ + + YA G + ++++ M EK P
Sbjct: 459 GTYVLLSNLYASSGKWKESTEIRESMRDSGIEKEP 493
>sp|Q9LIQ7|PP252_ARATH Pentatricopeptide repeat-containing protein At3g24000,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H87 PE=2
SV=1
Length = 633
Score = 302 bits (773), Expect = 6e-81, Method: Compositional matrix adjust.
Identities = 151/474 (31%), Positives = 261/474 (55%), Gaps = 33/474 (6%)
Query: 123 NNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSIS 182
N +L+ YA G ++ AR +F+ M +RD V+W T+I GY++ + L F+ + RF S
Sbjct: 99 NTLLNMYAKCGSLEEARKVFEKMPQRDFVTWTTLISGYSQHDRPCDALLFFNQMLRFGYS 158
Query: 183 CNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRL 242
NEF+ + ++ Q+HG + GF SNV + S+++D Y + G + DA+ +
Sbjct: 159 PNEFTLSSVIKAAAAERRGCCGHQLHGFCVKCGFDSNVHVGSALLDLYTRYGLMDDAQLV 218
Query: 243 FDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKAL 302
F+ + +N VSW LIAG+ R +KAL
Sbjct: 219 -------------------------------FDALESRNDVSWNALIAGHARRSGTEKAL 247
Query: 303 ELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMY 362
ELF M+ RP+ +++S AC+S L+ GK VH ++I++ + ++L+DMY
Sbjct: 248 ELFQGMLRDGFRPSHFSYASLFGACSSTGFLEQGKWVHAYMIKSGEKLVAFAGNTLLDMY 307
Query: 363 SKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITL 422
+K G ++D R++FD K + + WN++++A QHG+ ++A+ F +M R ++P++I+
Sbjct: 308 AKSGSIHDARKIFDRL-AKRDVVSWNSLLTAYAQHGFGKEAVWWFEEMRRVGIRPNEISF 366
Query: 423 AVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMP 482
+L AC+HSGL+ EG Y+E M D GI+P H+ +++LL +AG ++ + +E+MP
Sbjct: 367 LSVLTACSHSGLLDEGWHYYELMKKD-GIVPEAWHYVTVVDLLGRAGDLNRALRFIEEMP 425
Query: 483 YEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEK 542
E + +W AL CR+H N ++G + + + +P H +L +IY++ G+ +
Sbjct: 426 IEPTAAIWKALLNACRMHKNTELGAYAAEHVFELDPDDPGPHVILYNIYASGGRWNDAAR 485
Query: 543 VRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQMGE 596
VR+ + E KKE A SW+EIEN +H F +D HP R+ + E++ ++ E
Sbjct: 486 VRKKMKESGVKKEPACSWVEIENAIHMFVANDERHPQREEIARKWEEVLAKIKE 539
Score = 93.2 bits (230), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 67/304 (22%), Positives = 129/304 (42%), Gaps = 62/304 (20%)
Query: 94 LISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSW 153
L+ +Y + G DA+ VFD + +N S+N +++G HAR
Sbjct: 202 LLDLYTRYGLMDDAQLVFDALESRNDVSWNALIAG--------HAR-------------- 239
Query: 154 NTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLV 213
+SG E+ L+ ++ + R + FS+A + C L+ + VH ++
Sbjct: 240 --------RSG-TEKALELFQGMLRDGFRPSHFSYASLFGACSSTGFLEQGKWVHAYMIK 290
Query: 214 TGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKL 273
+G ++++D YAK G + DAR++FD RDV++W ++++ YA+
Sbjct: 291 SGEKLVAFAGNTLLDMYAKSGSIHDARKIFDRLAKRDVVSWNSLLTAYAQ---------- 340
Query: 274 FNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSL 333
+G G++A+ F M + IRPN+ +F S L AC+ L
Sbjct: 341 ---------------------HGFGKEAVWWFEEMRRVGIRPNEISFLSVLTACSHSGLL 379
Query: 334 KHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISA 393
G + + + +++D+ + G LN + + + + +W +++A
Sbjct: 380 DEGWHYYELMKKDGIVPEAWHYVTVVDLLGRAGDLNRALRFIEEMPIEPTAAIWKALLNA 439
Query: 394 LTQH 397
H
Sbjct: 440 CRMH 443
Score = 72.4 bits (176), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 59/253 (23%), Positives = 121/253 (47%), Gaps = 14/253 (5%)
Query: 47 GIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVD 106
G R + A + C+ + L+ GK VH ++ + K F N L+ MY K GS D
Sbjct: 257 GFRPSHFSYASLFGACSSTGFLEQGKWVHAYMIKSGEKL-VAFAGNTLLDMYAKSGSIHD 315
Query: 107 ARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDV----VSWNTMIIGYAK 162
ARK+FD++ +++ S+N++L+ YA G K A F+ M + +S+ +++ +
Sbjct: 316 ARKIFDRLAKRDVVSWNSLLTAYAQHGFGKEAVWWFEEMRRVGIRPNEISFLSVLTACSH 375
Query: 163 SGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLV--TGFLSNV 220
SG ++EG +Y+++++ I + + ++ + + +L + ++ + T +
Sbjct: 376 SGLLDEGWHYYELMKKDGIVPEAWHYVTVVDLLGRAGDLNRALRFIEEMPIEPTAAIWKA 435
Query: 221 VISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPE- 279
++++ + + G + A +F E D D + + YA G A+++ +M E
Sbjct: 436 LLNACRMHKNTELGAYA-AEHVF-ELDPDDPGPHVILYNIYASGGRWNDAARVRKKMKES 493
Query: 280 ---KNPV-SWTTL 288
K P SW +
Sbjct: 494 GVKKEPACSWVEI 506
Score = 70.5 bits (171), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 67/118 (56%), Gaps = 1/118 (0%)
Query: 313 IRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGR 372
I ++ +++ L C L G+ VH ++++ FR + ++ ++L++MY+KCG L + R
Sbjct: 56 IPADRRFYNTLLKKCTVFKLLIQGRIVHAHILQSIFRHDIVMGNTLLNMYAKCGSLEEAR 115
Query: 373 QVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACT 430
+VF+ + + + W T+IS +QH A+ F+ M+R P++ TL+ ++ A
Sbjct: 116 KVFEKMPQR-DFVTWTTLISGYSQHDRPCDALLFFNQMLRFGYSPNEFTLSSVIKAAA 172
>sp|Q9SV26|PP297_ARATH Pentatricopeptide repeat-containing protein At4g01030,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H65 PE=3
SV=2
Length = 768
Score = 301 bits (772), Expect = 7e-81, Method: Compositional matrix adjust.
Identities = 179/607 (29%), Positives = 301/607 (49%), Gaps = 45/607 (7%)
Query: 31 GQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFL 90
G +A+ + G + T+ +LQ C+ + G+++H ++ L +
Sbjct: 68 GNWEKAVELFREMQFSGAKAYDSTMVKLLQVCSNKEGFAEGRQIHGYV-LRLGLESNVSM 126
Query: 91 SNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMA---- 146
N LI MY + G +RKVF+ + +NL S+N++LS Y LG + A L D M
Sbjct: 127 CNSLIVMYSRNGKLELSRKVFNSMKDRNLSSWNSILSSYTKLGYVDDAIGLLDEMEICGL 186
Query: 147 ERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQ 206
+ D+V+WN+++ GYA G ++ + K ++ + + S + +L + LKL +
Sbjct: 187 KPDIVTWNSLLSGYASKGLSKDAIAVLKRMQIAGLKPSTSSISSLLQAVAEPGHLKLGKA 246
Query: 207 VHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDAR----------------- 249
+HG +L +V + ++++D Y K G L AR +FD DA+
Sbjct: 247 IHGYILRNQLWYDVYVETTLIDMYIKTGYLPYARMVFDMMDAKNIVAWNSLVSGLSYACL 306
Query: 250 ------------------DVLTWTTMVSGYAKLGDMESASKLFNEMPEK----NPVSWTT 287
D +TW ++ SGYA LG E A + +M EK N VSWT
Sbjct: 307 LKDAEALMIRMEKEGIKPDAITWNSLASGYATLGKPEKALDVIGKMKEKGVAPNVVSWTA 366
Query: 288 LIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTN 347
+ +G ++NG + AL++F +M + PN T S+ L + L GK+VHGF +R N
Sbjct: 367 IFSGCSKNGNFRNALKVFIKMQEEGVGPNAATMSTLLKILGCLSLLHSGKEVHGFCLRKN 426
Query: 348 FRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLF 407
+ V ++L+DMY K G L ++F NK + WN M+ G E+ I F
Sbjct: 427 LICDAYVATALVDMYGKSGDLQSAIEIFWGIKNKSLAS-WNCMLMGYAMFGRGEEGIAAF 485
Query: 408 HDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQ 467
M+ + ++PD IT +L+ C +SGLVQEG YF+ M GIIP EH +C+++LL +
Sbjct: 486 SVMLEAGMEPDAITFTSVLSVCKNSGLVQEGWKYFDLMRSRYGIIPTIEHCSCMVDLLGR 545
Query: 468 AGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLL 527
+G D+ + ++ M + D+ +W A C+IH ++++ +L P +SA + ++
Sbjct: 546 SGYLDEAWDFIQTMSLKPDATIWGAFLSSCKIHRDLELAEIAWKRLQVLEPHNSANYMMM 605
Query: 528 SSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVL 587
++YS L + VE++R L+ + + + SWI+I+ VH F HP +Y L
Sbjct: 606 INLYSNLNRWEDVERIRNLMRNNRVRVQDLWSWIQIDQTVHIFYAEGKTHPDEGDIYFEL 665
Query: 588 EQLAGQM 594
+L +M
Sbjct: 666 YKLVSEM 672
Score = 176 bits (447), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 100/321 (31%), Positives = 173/321 (53%), Gaps = 6/321 (1%)
Query: 138 ARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVK 197
A LFD M +RD ++WN +++ +SG E+ ++ ++ ++ + + +L +C
Sbjct: 42 ANKLFDEMPKRDDLAWNEIVMVNLRSGNWEKAVELFREMQFSGAKAYDSTMVKLLQVCSN 101
Query: 198 LEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTM 257
E RQ+HG VL G SNV + +S++ Y++ G+L +R++F+ R++ +W ++
Sbjct: 102 KEGFAEGRQIHGYVLRLGLESNVSMCNSLIVMYSRNGKLELSRKVFNSMKDRNLSSWNSI 161
Query: 258 VSGYAKLGDMESASKLFNEMP----EKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRI 313
+S Y KLG ++ A L +EM + + V+W +L++GY GL + A+ + RM I +
Sbjct: 162 LSSYTKLGYVDDAIGLLDEMEICGLKPDIVTWNSLLSGYASKGLSKDAIAVLKRMQIAGL 221
Query: 314 RPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQ 373
+P+ + SS L A A LK GK +HG+++R + V ++LIDMY K G L R
Sbjct: 222 KPSTSSISSLLQAVAEPGHLKLGKAIHGYILRNQLWYDVYVETTLIDMYIKTGYLPYARM 281
Query: 374 VFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSG 433
VFD+ D K N + WN+++S L+ + A L M + +KPD IT + + G
Sbjct: 282 VFDMMDAK-NIVAWNSLVSGLSYACLLKDAEALMIRMEKEGIKPDAITWNSLASGYATLG 340
Query: 434 LVQEGLTYFESMTHDLGIIPN 454
++ L M G+ PN
Sbjct: 341 KPEKALDVIGKMKEK-GVAPN 360
Score = 115 bits (287), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 87/325 (26%), Positives = 159/325 (48%), Gaps = 14/325 (4%)
Query: 240 RRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQ 299
+R D +D R V + + Y + + A+KLF+EMP+++ ++W ++ R+G +
Sbjct: 15 KRGLDNSDTRVV---SASMGFYGRCVSLGFANKLFDEMPKRDDLAWNEIVMVNLRSGNWE 71
Query: 300 KALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLI 359
KA+ELF M + T L C++ G+Q+HG+++R SN + +SLI
Sbjct: 72 KAVELFREMQFSGAKAYDSTMVKLLQVCSNKEGFAEGRQIHGYVLRLGLESNVSMCNSLI 131
Query: 360 DMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDK 419
MYS+ G L R+VF+ ++ N WN+++S+ T+ GY + AI L +M +KPD
Sbjct: 132 VMYSRNGKLELSRKVFNSMKDR-NLSSWNSILSSYTKLGYVDDAIGLLDEMEICGLKPDI 190
Query: 420 ITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAG---CSDQLMN 476
+T +L+ GL ++ + + M G+ P+ + L++ +A+ G +
Sbjct: 191 VTWNSLLSGYASKGLSKDAIAVLKRM-QIAGLKPSTSSISSLLQAVAEPGHLKLGKAIHG 249
Query: 477 QLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSI-YSALG 535
+ + +D Y+ L + G + R V D + +N A + L+S + Y+ L
Sbjct: 250 YILRNQLWYDVYVETTLIDMYIKTGYLPYARMVFDMMDAKNI--VAWNSLVSGLSYACLL 307
Query: 536 KGRLVEKVRQLINERQFKKEQAISW 560
K +R E++ K AI+W
Sbjct: 308 KDAEALMIRM---EKEGIKPDAITW 329
>sp|Q9FI80|PP425_ARATH Pentatricopeptide repeat-containing protein At5g48910
OS=Arabidopsis thaliana GN=PCMP-H38 PE=2 SV=1
Length = 646
Score = 301 bits (772), Expect = 8e-81, Method: Compositional matrix adjust.
Identities = 158/477 (33%), Positives = 268/477 (56%), Gaps = 18/477 (3%)
Query: 135 MKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLK---FYKVLRRFSISCNEFSFAGI 191
+ +A +F+ M +R+ SWNT+I G+++S + + FY+++ + N F+F +
Sbjct: 75 LDYAHKIFNQMPQRNCFSWNTIIRGFSESDEDKALIAITLFYEMMSDEFVEPNRFTFPSV 134
Query: 192 LTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDE------ 245
L C K +++ +Q+HG L GF + + S++V Y CG + DAR LF +
Sbjct: 135 LKACAKTGKIQEGKQIHGLALKYGFGGDEFVMSNLVRMYVMCGFMKDARVLFYKNIIEKD 194
Query: 246 ----TDAR----DVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGL 297
TD R +++ W M+ GY +LGD ++A LF++M +++ VSW T+I+GY+ NG
Sbjct: 195 MVVMTDRRKRDGEIVLWNVMIDGYMRLGDCKAARMLFDKMRQRSVVSWNTMISGYSLNGF 254
Query: 298 GQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSS 357
+ A+E+F M IRPN T S L A + + SL+ G+ +H + + R + ++ S+
Sbjct: 255 FKDAVEVFREMKKGDIRPNYVTLVSVLPAISRLGSLELGEWLHLYAEDSGIRIDDVLGSA 314
Query: 358 LIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKP 417
LIDMYSKCG + VF+ +EN + W+ MI+ HG AI F M ++ V+P
Sbjct: 315 LIDMYSKCGIIEKAIHVFERLP-RENVITWSAMINGFAIHGQAGDAIDCFCKMRQAGVRP 373
Query: 418 DKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQ 477
+ +L AC+H GLV+EG YF M G+ P EH+ C+++LL ++G D+
Sbjct: 374 SDVAYINLLTACSHGGLVEEGRRYFSQMVSVDGLEPRIEHYGCMVDLLGRSGLLDEAEEF 433
Query: 478 LEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKG 537
+ MP + D +W AL G CR+ GN++MG++V + L+D P S + LS++Y++ G
Sbjct: 434 ILNMPIKPDDVIWKALLGACRMQGNVEMGKRVANILMDMVPHDSGAYVALSNMYASQGNW 493
Query: 538 RLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQM 594
V ++R + E+ +K+ S I+I+ +H F V D HP + S+L +++ ++
Sbjct: 494 SEVSEMRLRMKEKDIRKDPGCSLIDIDGVLHEFVVEDDSHPKAKEINSMLVEISDKL 550
Score = 130 bits (327), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 91/376 (24%), Positives = 171/376 (45%), Gaps = 50/376 (13%)
Query: 54 TLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDK 113
T +L+ CA++ ++ GK++H L L F+ ++L+ MY CG DAR +F K
Sbjct: 130 TFPSVLKACAKTGKIQEGKQIH-GLALKYGFGGDEFVMSNLVRMYVMCGFMKDARVLFYK 188
Query: 114 IPVKN--------------LFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIG 159
++ + +N M+ GY LG K AR LFD M +R VVSWNTMI G
Sbjct: 189 NIIEKDMVVMTDRRKRDGEIVLWNVMIDGYMRLGDCKAARMLFDKMRQRSVVSWNTMISG 248
Query: 160 YAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSN 219
Y+ +G ++ ++ ++ +++ I N + +L +L L+L +H +G +
Sbjct: 249 YSLNGFFKDAVEVFREMKKGDIRPNYVTLVSVLPAISRLGSLELGEWLHLYAEDSGIRID 308
Query: 220 VVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPE 279
V+ S+++D Y+KCG + A +F+ +V+TW+ M++G+A
Sbjct: 309 DVLGSALIDMYSKCGIIEKAIHVFERLPRENVITWSAMINGFAI---------------- 352
Query: 280 KNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQV 339
+G A++ F +M +RP+ + + L AC+ ++ G++
Sbjct: 353 ---------------HGQAGDAIDCFCKMRQAGVRPSDVAYINLLTACSHGGLVEEGRRY 397
Query: 340 HGFLIRTNFRSNTIV-MSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHG 398
++ + I ++D+ + G L++ + K + ++W ++ A G
Sbjct: 398 FSQMVSVDGLEPRIEHYGCMVDLLGRSGLLDEAEEFILNMPIKPDDVIWKALLGACRMQG 457
Query: 399 YDEQAIR---LFHDMV 411
E R + DMV
Sbjct: 458 NVEMGKRVANILMDMV 473
Score = 125 bits (313), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 80/283 (28%), Positives = 136/283 (48%), Gaps = 49/283 (17%)
Query: 266 DMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQK--ALELFTRMMILR-IRPNQHTFSS 322
D++ A K+FN+MP++N SW T+I G++ + + A+ LF MM + PN+ TF S
Sbjct: 74 DLDYAHKIFNQMPQRNCFSWNTIIRGFSESDEDKALIAITLFYEMMSDEFVEPNRFTFPS 133
Query: 323 CLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVF------- 375
L ACA ++ GKQ+HG ++ F + VMS+L+ MY CG + D R +F
Sbjct: 134 VLKACAKTGKIQEGKQIHGLALKYGFGGDEFVMSNLVRMYVMCGFMKDARVLFYKNIIEK 193
Query: 376 --------------------------DLTDNKENSML-----------WNTMISALTQHG 398
L D K ML WNTMIS + +G
Sbjct: 194 DMVVMTDRRKRDGEIVLWNVMIDGYMRLGDCKAARMLFDKMRQRSVVSWNTMISGYSLNG 253
Query: 399 YDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHH 458
+ + A+ +F +M + ++P+ +TL +L A + G ++ G + D GI +
Sbjct: 254 FFKDAVEVFREMKKGDIRPNYVTLVSVLPAISRLGSLELG-EWLHLYAEDSGIRIDDVLG 312
Query: 459 ACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHG 501
+ LI++ ++ G ++ ++ E++P E + W+A+ IHG
Sbjct: 313 SALIDMYSKCGIIEKAIHVFERLPRE-NVITWSAMINGFAIHG 354
Score = 58.5 bits (140), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 75/147 (51%), Gaps = 5/147 (3%)
Query: 31 GQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFL 90
G +A+ + + IR TL +L + SL+LG+ +HL+ + + + L
Sbjct: 253 GFFKDAVEVFREMKKGDIRPNYVTLVSVLPAISRLGSLELGEWLHLYAEDSGIRIDDV-L 311
Query: 91 SNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDV 150
+ LI MY KCG A VF+++P +N+ +++ M++G+A G A + F M + V
Sbjct: 312 GSALIDMYSKCGIIEKAIHVFERLPRENVITWSAMINGFAIHGQAGDAIDCFCKMRQAGV 371
Query: 151 ----VSWNTMIIGYAKSGAVEEGLKFY 173
V++ ++ + G VEEG +++
Sbjct: 372 RPSDVAYINLLTACSHGGLVEEGRRYF 398
>sp|Q9S7F4|PP206_ARATH Putative pentatricopeptide repeat-containing protein At2g01510
OS=Arabidopsis thaliana GN=PCMP-H36 PE=3 SV=1
Length = 825
Score = 301 bits (771), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 159/481 (33%), Positives = 263/481 (54%), Gaps = 33/481 (6%)
Query: 123 NNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSIS 182
N +L Y+ + R LFD M E D VS+N +I Y+++ E L F++ ++
Sbjct: 289 NQILDFYSKHDRVLETRMLFDEMPELDFVSYNVVISSYSQADQYEASLHFFREMQCMGFD 348
Query: 183 CNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRL 242
F FA +L+I L L++ RQ+H Q L+ S + + +S+VD YAKC +
Sbjct: 349 RRNFPFATMLSIAANLSSLQMGRQLHCQALLATADSILHVGNSLVDMYAKC-------EM 401
Query: 243 FDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKAL 302
F+E A +F +P++ VSWT LI+GY + GL L
Sbjct: 402 FEE------------------------AELIFKSLPQRTTVSWTALISGYVQKGLHGAGL 437
Query: 303 ELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMY 362
+LFT+M +R +Q TF++ L A AS SL GKQ+H F+IR+ N S L+DMY
Sbjct: 438 KLFTKMRGSNLRADQSTFATVLKASASFASLLLGKQLHAFIIRSGNLENVFSGSGLVDMY 497
Query: 363 SKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITL 422
+KCG + D QVF+ ++ N++ WN +ISA +G E AI F M+ S ++PD +++
Sbjct: 498 AKCGSIKDAVQVFEEMPDR-NAVSWNALISAHADNGDGEAAIGAFAKMIESGLQPDSVSI 556
Query: 423 AVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMP 482
+L AC+H G V++G YF++M+ GI P ++H+AC+++LL + G + +++MP
Sbjct: 557 LGVLTACSHCGFVEQGTEYFQAMSPIYGITPKKKHYACMLDLLGRNGRFAEAEKLMDEMP 616
Query: 483 YEHDSYLWNALHGVCRIHGNIDMGRKVVDQLID-QNPQSSATHGLLSSIYSALGKGRLVE 541
+E D +W+++ CRIH N + + ++L + + +A + +S+IY+A G+ V
Sbjct: 617 FEPDEIMWSSVLNACRIHKNQSLAERAAEKLFSMEKLRDAAAYVSMSNIYAAAGEWEKVR 676
Query: 542 KVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQMGEDAPSL 601
V++ + ER KK A SW+E+ +K+H FS +D HP D + + +L ++ +
Sbjct: 677 DVKKAMRERGIKKVPAYSWVEVNHKIHVFSSNDQTHPNGDEIVRKINELTAEIEREGYKP 736
Query: 602 D 602
D
Sbjct: 737 D 737
Score = 136 bits (343), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 91/323 (28%), Positives = 157/323 (48%), Gaps = 34/323 (10%)
Query: 91 SNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDV 150
SN ++ + G ARKV+D++P KN S N M+SG+ G + AR+LFD M +R V
Sbjct: 51 SNFIVEDLLRRGQVSAARKVYDEMPHKNTVSTNTMISGHVKTGDVSSARDLFDAMPDRTV 110
Query: 151 VSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISC---NEFSFAGILTICVKLEELKLTRQV 207
V+W ++ YA++ +E K ++ + R S SC + +F +L C QV
Sbjct: 111 VTWTILMGWYARNSHFDEAFKLFRQMCR-SSSCTLPDHVTFTTLLPGCNDAVPQNAVGQV 169
Query: 208 HGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDM 267
H + GF +N ++ S V ++ Y ++ +
Sbjct: 170 HAFAVKLGFDTNPFLTVSNV-----------------------------LLKSYCEVRRL 200
Query: 268 ESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCAC 327
+ A LF E+PEK+ V++ TLI GY ++GL +++ LF +M +P+ TFS L A
Sbjct: 201 DLACVLFEEIPEKDSVTFNTLITGYEKDGLYTESIHLFLKMRQSGHQPSDFTFSGVLKAV 260
Query: 328 ASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLW 387
+ G+Q+H + T F + V + ++D YSK + + R +FD + + + +
Sbjct: 261 VGLHDFALGQQLHALSVTTGFSRDASVGNQILDFYSKHDRVLETRMLFDEMP-ELDFVSY 319
Query: 388 NTMISALTQHGYDEQAIRLFHDM 410
N +IS+ +Q E ++ F +M
Sbjct: 320 NVVISSYSQADQYEASLHFFREM 342
Score = 117 bits (294), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 71/229 (31%), Positives = 124/229 (54%), Gaps = 5/229 (2%)
Query: 204 TRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAK 263
TR+V +++ TGF ++ S+ IV+ + G++S AR+++DE ++ ++ TM+SG+ K
Sbjct: 32 TRRVDARIIKTGFDTDTCRSNFIVEDLLRRGQVSAARKVYDEMPHKNTVSTNTMISGHVK 91
Query: 264 LGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILR--IRPNQHTFS 321
GD+ SA LF+ MP++ V+WT L+ Y RN +A +LF +M P+ TF+
Sbjct: 92 TGDVSSARDLFDAMPDRTVVTWTILMGWYARNSHFDEAFKLFRQMCRSSSCTLPDHVTFT 151
Query: 322 SCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGC--LNDGRQVFDLTD 379
+ L C V QVH F ++ F +N + S + + S C L+ +F+
Sbjct: 152 TLLPGCNDAVPQNAVGQVHAFAVKLGFDTNPFLTVSNVLLKSYCEVRRLDLACVLFEEIP 211
Query: 380 NKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNA 428
K +S+ +NT+I+ + G ++I LF M +S +P T + +L A
Sbjct: 212 EK-DSVTFNTLITGYEKDGLYTESIHLFLKMRQSGHQPSDFTFSGVLKA 259
>sp|O23266|PP308_ARATH Pentatricopeptide repeat-containing protein At4g14050,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H13 PE=2
SV=3
Length = 612
Score = 299 bits (766), Expect = 4e-80, Method: Compositional matrix adjust.
Identities = 166/539 (30%), Positives = 291/539 (53%), Gaps = 36/539 (6%)
Query: 59 LQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKN 118
LQ CA +++L K +H H+ + L+N L+++Y KCG+
Sbjct: 10 LQLCARNRTLTTAKALHAHI-VKLGIVQCCPLANTLVNVYGKCGA--------------- 53
Query: 119 LFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRR 178
HA +FD M RD ++W +++ ++ + L + +
Sbjct: 54 ----------------ASHALQVFDEMPHRDHIAWASVLTALNQANLSGKTLSVFSSVGS 97
Query: 179 FS-ISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELS 237
S + ++F F+ ++ C L + RQVH +V+ + ++ V+ SS+VD YAKCG L+
Sbjct: 98 SSGLRPDDFVFSALVKACANLGSIDHGRQVHCHFIVSEYANDEVVKSSLVDMYAKCGLLN 157
Query: 238 DARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGL 297
A+ +FD ++ ++WT MVSGYAK G E A +LF +P KN SWT LI+G+ ++G
Sbjct: 158 SAKAVFDSIRVKNTISWTAMVSGYAKSGRKEEALELFRILPVKNLYSWTALISGFVQSGK 217
Query: 298 GQKALELFTRMMILRIRP-NQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMS 356
G +A +FT M R+ + SS + ACA++ + G+QVHG +I F S + +
Sbjct: 218 GLEAFSVFTEMRRERVDILDPLVLSSIVGACANLAASIAGRQVHGLVIALGFDSCVFISN 277
Query: 357 SLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVK 416
+LIDMY+KC + + +F ++ + + W ++I + QHG E+A+ L+ DMV VK
Sbjct: 278 ALIDMYAKCSDVIAAKDIFSRMRHR-DVVSWTSLIVGMAQHGQAEKALALYDDMVSHGVK 336
Query: 417 PDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMN 476
P+++T ++ AC+H G V++G F+SMT D GI P+ +H+ CL++LL ++G D+ N
Sbjct: 337 PNEVTFVGLIYACSHVGFVEKGRELFQSMTKDYGIRPSLQHYTCLLDLLGRSGLLDEAEN 396
Query: 477 QLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQ-NPQSSATHGLLSSIYSALG 535
+ MP+ D W AL C+ G MG ++ D L+ + +T+ LLS+IY++
Sbjct: 397 LIHTMPFPPDEPTWAALLSACKRQGRGQMGIRIADHLVSSFKLKDPSTYILLSNIYASAS 456
Query: 536 KGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQM 594
V + R+ + E + +K+ S +E+ + F ++ HP+++ ++ +L++L +M
Sbjct: 457 LWGKVSEARRKLGEMEVRKDPGHSSVEVRKETEVFYAGETSHPLKEDIFRLLKKLEEEM 515
Score = 155 bits (391), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 106/376 (28%), Positives = 174/376 (46%), Gaps = 42/376 (11%)
Query: 58 ILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVK 117
+++ CA S+ G++VH H +++ S+ L+ MY KCG A+ VFD I VK
Sbjct: 111 LVKACANLGSIDHGRQVHCHFIVSEYANDEVVKSS-LVDMYAKCGLLNSAKAVFDSIRVK 169
Query: 118 NLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLR 177
N S+ M+SGYA G + A LF + +++ SW +I G+ +SG E + +R
Sbjct: 170 NTISWTAMVSGYAKSGRKEEALELFRILPVKNLYSWTALISGFVQSGKGLEAFSVFTEMR 229
Query: 178 RFSISC-NEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGEL 236
R + + + I+ C L RQVHG V+ GF S V IS++++D YAKC ++
Sbjct: 230 RERVDILDPLVLSSIVGACANLAASIAGRQVHGLVIALGFDSCVFISNALIDMYAKCSDV 289
Query: 237 SDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEM----PEKNPVSWTTLIAGY 292
A+ +F RDV++WT+++ G A+ G E A L+++M + N V++ LI
Sbjct: 290 IAAKDIFSRMRHRDVVSWTSLIVGMAQHGQAEKALALYDDMVSHGVKPNEVTFVGLIYAC 349
Query: 293 TRNGLGQKALELFTRMMI-LRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSN 351
+ G +K ELF M IRP SL+H
Sbjct: 350 SHVGFVEKGRELFQSMTKDYGIRP----------------SLQH---------------- 377
Query: 352 TIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMV 411
+ L+D+ + G L++ + + W ++SA + G + IR+ +V
Sbjct: 378 ---YTCLLDLLGRSGLLDEAENLIHTMPFPPDEPTWAALLSACKRQGRGQMGIRIADHLV 434
Query: 412 RSSVKPDKITLAVILN 427
S D T ++ N
Sbjct: 435 SSFKLKDPSTYILLSN 450
>sp|P93005|PP181_ARATH Pentatricopeptide repeat-containing protein At2g33680
OS=Arabidopsis thaliana GN=PCMP-E19 PE=3 SV=1
Length = 727
Score = 297 bits (761), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 178/574 (31%), Positives = 294/574 (51%), Gaps = 70/574 (12%)
Query: 29 SKGQLSEAISSLDLLAQRGIRLPAETLAF--ILQQCAESKSLKLGKRVHLHLKLTQRKTP 86
++G++ EAI +L + F +L A + + LG+++H +T +
Sbjct: 196 TRGRVEEAIKVFNLFLREKEEGSDSDYVFTAVLSSLAATIYVGLGRQIHC---ITIKNGL 252
Query: 87 TTF--LSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDN 144
F LSN L++MY KC S + A +FD+
Sbjct: 253 LGFVALSNALVTMYSKCES-------------------------------LNEACKMFDS 281
Query: 145 MAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLT 204
+R+ ++W+ M+ GY+++G E +K + + I +E++ G+L C + L+
Sbjct: 282 SGDRNSITWSAMVTGYSQNGESLEAVKLFSRMFSAGIKPSEYTIVGVLNACSDICYLEEG 341
Query: 205 RQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKL 264
+Q+H +L GF ++ ++++VD YAK G L+DAR+ FD RDV WT+++SGY +
Sbjct: 342 KQLHSFLLKLGFERHLFATTALVDMYAKAGCLADARKGFDCLQERDVALWTSLISGYVQN 401
Query: 265 GDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCL 324
D E +AL L+ RM I PN T +S L
Sbjct: 402 SDNE-------------------------------EALILYRRMKTAGIIPNDPTMASVL 430
Query: 325 CACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENS 384
AC+S+ +L+ GKQVHG I+ F + S+L MYSKCG L DG VF T NK+
Sbjct: 431 KACSSLATLELGKQVHGHTIKHGFGLEVPIGSALSTMYSKCGSLEDGNLVFRRTPNKD-V 489
Query: 385 MLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFES 444
+ WN MIS L+ +G ++A+ LF +M+ ++PD +T I++AC+H G V+ G YF
Sbjct: 490 VSWNAMISGLSHNGQGDEALELFEEMLAEGMEPDDVTFVNIISACSHKGFVERGWFYFNM 549
Query: 445 MTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNID 504
M+ +G+ P +H+AC+++LL++AG + +E +H LW L C+ HG +
Sbjct: 550 MSDQIGLDPKVDHYACMVDLLSRAGQLKEAKEFIESANIDHGLCLWRILLSACKNHGKCE 609
Query: 505 MGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIE 564
+G ++L+ + S+T+ LS IY+ALG+ R VE+V + + KE SWIE++
Sbjct: 610 LGVYAGEKLMALGSRESSTYVQLSGIYTALGRMRDVERVWKHMRANGVSKEVGCSWIELK 669
Query: 565 NKVHAFSVSDSLHPMRDVLYSVLEQLAGQMGEDA 598
N+ H F V D++HPM + ++ ++ QM E+
Sbjct: 670 NQYHVFVVGDTMHPMIEETKDLVCLVSRQMIEEG 703
Score = 174 bits (440), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 94/340 (27%), Positives = 179/340 (52%), Gaps = 36/340 (10%)
Query: 118 NLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLR 177
+++ +++ Y G+++ +F M ER+ +W+TM+ GYA G VEE +K + +
Sbjct: 152 DIYVDTSLVGMYCKAGLVEDGLKVFAYMPERNTYTWSTMVSGYATRGRVEEAIKVFNLFL 211
Query: 178 RF--SISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGE 235
R S +++ F +L+ + L RQ+H + G L V +S+++V Y+KC
Sbjct: 212 REKEEGSDSDYVFTAVLSSLAATIYVGLGRQIHCITIKNGLLGFVALSNALVTMYSKCES 271
Query: 236 LSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRN 295
L++A K+F+ ++N ++W+ ++ GY++N
Sbjct: 272 LNEA-------------------------------CKMFDSSGDRNSITWSAMVTGYSQN 300
Query: 296 GLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVM 355
G +A++LF+RM I+P+++T L AC+ I L+ GKQ+H FL++ F +
Sbjct: 301 GESLEAVKLFSRMFSAGIKPSEYTIVGVLNACSDICYLEEGKQLHSFLLKLGFERHLFAT 360
Query: 356 SSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSV 415
++L+DMY+K GCL D R+ FD ++ + LW ++IS Q+ +E+A+ L+ M + +
Sbjct: 361 TALVDMYAKAGCLADARKGFDCLQERDVA-LWTSLISGYVQNSDNEEALILYRRMKTAGI 419
Query: 416 KPDKITLAVILNACTHSGLVQEG-LTYFESMTHDLGI-IP 453
P+ T+A +L AC+ ++ G + ++ H G+ +P
Sbjct: 420 IPNDPTMASVLKACSSLATLELGKQVHGHTIKHGFGLEVP 459
Score = 165 bits (418), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 102/375 (27%), Positives = 186/375 (49%), Gaps = 37/375 (9%)
Query: 123 NNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEG---LKFYKVLRRF 179
N +++ YA G + A ++F+ + +DVVSWN++I GY+++G + ++ ++ +R
Sbjct: 53 NVLVNFYAKCGKLAKAHSIFNAIICKDVVSWNSLITGYSQNGGISSSYTVMQLFREMRAQ 112
Query: 180 SISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDA 239
I N ++ AGI L+ + RQ H V+ ++ + +S+V Y K G + D
Sbjct: 113 DILPNAYTLAGIFKAESSLQSSTVGRQAHALVVKMSSFGDIYVDTSLVGMYCKAGLVEDG 172
Query: 240 RRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFN-EMPEKNPVSWTTLIAGYTRNGLG 298
++F R+ TW+TMVSGYA G +E A K+FN + EK S
Sbjct: 173 LKVFAYMPERNTYTWSTMVSGYATRGRVEEAIKVFNLFLREKEEGS-------------- 218
Query: 299 QKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSL 358
+ + F++ L + A+ + + G+Q+H I+ + ++L
Sbjct: 219 ----------------DSDYVFTAVLSSLAATIYVGLGRQIHCITIKNGLLGFVALSNAL 262
Query: 359 IDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPD 418
+ MYSKC LN+ ++FD + ++ NS+ W+ M++ +Q+G +A++LF M + +KP
Sbjct: 263 VTMYSKCESLNEACKMFDSSGDR-NSITWSAMVTGYSQNGESLEAVKLFSRMFSAGIKPS 321
Query: 419 KITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQL 478
+ T+ +LNAC+ ++EG S LG + L+++ A+AGC
Sbjct: 322 EYTIVGVLNACSDICYLEEG-KQLHSFLLKLGFERHLFATTALVDMYAKAGCLADARKGF 380
Query: 479 EKMPYEHDSYLWNAL 493
+ + E D LW +L
Sbjct: 381 DCLQ-ERDVALWTSL 394
Score = 57.8 bits (138), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 51/223 (22%), Positives = 98/223 (43%), Gaps = 16/223 (7%)
Query: 332 SLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMI 391
+L G+ VHG +IRT + + L++ Y+KCG L +F+ K+ + WN++I
Sbjct: 29 NLVAGRAVHGQIIRTGASTCIQHANVLVNFYAKCGKLAKAHSIFNAIICKD-VVSWNSLI 87
Query: 392 SALTQHG---YDEQAIRLFHDMVRSSVKPDKITLAVILNA-----CTHSGLVQEGLTYFE 443
+ +Q+G ++LF +M + P+ TLA I A + G L
Sbjct: 88 TGYSQNGGISSSYTVMQLFREMRAQDILPNAYTLAGIFKAESSLQSSTVGRQAHALVVKM 147
Query: 444 SMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNI 503
S D+ + L+ + +AG + + MP E ++Y W+ + G +
Sbjct: 148 SSFGDIYV------DTSLVGMYCKAGLVEDGLKVFAYMP-ERNTYTWSTMVSGYATRGRV 200
Query: 504 DMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQL 546
+ KV + + + + S + + +++ S+L V RQ+
Sbjct: 201 EEAIKVFNLFLREKEEGSDSDYVFTAVLSSLAATIYVGLGRQI 243
>sp|Q9CAY1|PP223_ARATH Putative pentatricopeptide repeat-containing protein At3g11460
OS=Arabidopsis thaliana GN=PCMP-H52 PE=3 SV=1
Length = 623
Score = 296 bits (759), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 172/573 (30%), Positives = 281/573 (49%), Gaps = 62/573 (10%)
Query: 33 LSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSN 92
SE+IS + + G A + FIL+ CA G+++H H+ +T F+
Sbjct: 34 FSESISLYRSMLRSGSSPDAFSFPFILKSCASLSLPVSGQQLHCHVTKGGCET-EPFVLT 92
Query: 93 HLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVS 152
LISMY KCG DARKVF++ P + S V
Sbjct: 93 ALISMYCKCGLVADARKVFEENPQSSQLS-----------------------------VC 123
Query: 153 WNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVL 212
+N +I GY + V + ++ ++ +S + + G++ +C E L L R +HGQ +
Sbjct: 124 YNALISGYTANSKVTDAAYMFRRMKETGVSVDSVTMLGLVPLCTVPEYLWLGRSLHGQCV 183
Query: 213 VTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASK 272
G S V + +S + Y KCG + E+ +
Sbjct: 184 KGGLDSEVAVLNSFITMYMKCGSV-------------------------------EAGRR 212
Query: 273 LFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVS 332
LF+EMP K ++W +I+GY++NGL LEL+ +M + P+ T S L +CA + +
Sbjct: 213 LFDEMPVKGLITWNAVISGYSQNGLAYDVLELYEQMKSSGVCPDPFTLVSVLSSCAHLGA 272
Query: 333 LKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMIS 392
K G +V + F N V ++ I MY++CG L R VFD+ K + + W MI
Sbjct: 273 KKIGHEVGKLVESNGFVPNVFVSNASISMYARCGNLAKARAVFDIMPVK-SLVSWTAMIG 331
Query: 393 ALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGII 452
HG E + LF DM++ ++PD ++L+AC+HSGL +GL F +M + +
Sbjct: 332 CYGMHGMGEIGLMLFDDMIKRGIRPDGAVFVMVLSACSHSGLTDKGLELFRAMKREYKLE 391
Query: 453 PNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQ 512
P EH++CL++LL +AG D+ M +E MP E D +W AL G C+IH N+DM +
Sbjct: 392 PGPEHYSCLVDLLGRAGRLDEAMEFIESMPVEPDGAVWGALLGACKIHKNVDMAELAFAK 451
Query: 513 LIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSV 572
+I+ P + + L+S+IYS + ++R ++ ER F+K+ S++E + +VH F
Sbjct: 452 VIEFEPNNIGYYVLMSNIYSDSKNQEGIWRIRVMMRERAFRKKPGYSYVEHKGRVHLFLA 511
Query: 573 SDSLHPMRDVLYSVLEQLAGQMGEDAPSLDADR 605
D H + ++ +L++L + E A ++D DR
Sbjct: 512 GDRSHEQTEEVHRMLDELETSVMELAGNMDCDR 544
Score = 121 bits (303), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 101/407 (24%), Positives = 173/407 (42%), Gaps = 40/407 (9%)
Query: 153 WNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVL 212
WN + A E + Y+ + R S + FSF IL C L +Q+H V
Sbjct: 21 WNVRLRELAYQSLFSESISLYRSMLRSGSSPDAFSFPFILKSCASLSLPVSGQQLHCHVT 80
Query: 213 VTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLT--WTTMVSGYAKLGDMESA 270
G + + ++++ Y KCG ++DAR++F+E L+ + ++SGY + A
Sbjct: 81 KGGCETEPFVLTALISMYCKCGLVADARKVFEENPQSSQLSVCYNALISGYTANSKVTDA 140
Query: 271 SKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASI 330
+ +F M E G+ ++ + L + P LC
Sbjct: 141 AYMFRRMKE---------------TGVSVDSVTM------LGLVP--------LCTVPEY 171
Query: 331 VSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTM 390
+ L G+ +HG ++ S V++S I MY KCG + GR++FD K + WN +
Sbjct: 172 LWL--GRSLHGQCVKGGLDSEVAVLNSFITMYMKCGSVEAGRRLFDEMPVK-GLITWNAV 228
Query: 391 ISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLG 450
IS +Q+G + L+ M S V PD TL +L++C H G + G + G
Sbjct: 229 ISGYSQNGLAYDVLELYEQMKSSGVCPDPFTLVSVLSSCAHLGAKKIGHE-VGKLVESNG 287
Query: 451 IIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVV 510
+PN I + A+ G + + MP + W A+ G +HG ++G +
Sbjct: 288 FVPNVFVSNASISMYARCGNLAKARAVFDIMPVK-SLVSWTAMIGCYGMHGMGEIGLMLF 346
Query: 511 DQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLIN--ERQFKKE 555
D +I + + + + SA L +K +L +R++K E
Sbjct: 347 DDMIKRGIRPDGA--VFVMVLSACSHSGLTDKGLELFRAMKREYKLE 391
Score = 114 bits (285), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 109/520 (20%), Positives = 206/520 (39%), Gaps = 82/520 (15%)
Query: 18 NCLIQSFLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLH 77
N LI + + ++++A + + G+ + + T+ ++ C + L LG+ +H
Sbjct: 125 NALISGY---TANSKVTDAAYMFRRMKETGVSVDSVTMLGLVPLCTVPEYLWLGRSLHGQ 181
Query: 78 LKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKH 137
+ L N I+MY KCGS R++FD++PVK L ++N ++SGY+ G+
Sbjct: 182 CVKGGLDSEVAVL-NSFITMYMKCGSVEAGRRLFDEMPVKGLITWNAVISGYSQNGLAYD 240
Query: 138 ARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVK 197
L++ M V + F+ +L+ C
Sbjct: 241 VLELYEQMKSSGVCP-------------------------------DPFTLVSVLSSCAH 269
Query: 198 LEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTM 257
L K+ +V V GF+ NV +S++ + YA+CG L+ AR +FD + +++WT M
Sbjct: 270 LGAKKIGHEVGKLVESNGFVPNVFVSNASISMYARCGNLAKARAVFDIMPVKSLVSWTAM 329
Query: 258 VSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQ 317
I Y +G+G+ L LF M+ IRP+
Sbjct: 330 -------------------------------IGCYGMHGMGEIGLMLFDDMIKRGIRPDG 358
Query: 318 HTFSSCLCACASIVSLKHGKQVHGFLIRT-NFRSNTIVMSSLIDMYSKCGCLNDGRQVFD 376
F L AC+ G ++ + R S L+D+ + G L++ + +
Sbjct: 359 AVFVMVLSACSHSGLTDKGLELFRAMKREYKLEPGPEHYSCLVDLLGRAGRLDEAMEFIE 418
Query: 377 LTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQ 436
+ + +W ++ A H + A F ++ +P+ I V+++ Q
Sbjct: 419 SMPVEPDGAVWGALLGACKIHKNVDMAELAFAKVIE--FEPNNIGYYVLMSNIYSDSKNQ 476
Query: 437 EGLTYFESMTHDLGI--IPNQEH--HACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNA 492
EG+ M + P + H + L S + ++ +M E ++
Sbjct: 477 EGIWRIRVMMRERAFRKKPGYSYVEHKGRVHLFLAGDRSHEQTEEVHRMLDELET----- 531
Query: 493 LHGVCRIHGNIDM--GRKVVDQLIDQNPQSSATHGLLSSI 530
V + GN+D G +V + + + + G+L+SI
Sbjct: 532 --SVMELAGNMDCDRGEEVSSTTREHSERLAIAFGILNSI 569
>sp|Q9LW63|PP251_ARATH Putative pentatricopeptide repeat-containing protein At3g23330
OS=Arabidopsis thaliana GN=PCMP-H32 PE=3 SV=1
Length = 715
Score = 296 bits (758), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 172/578 (29%), Positives = 301/578 (52%), Gaps = 44/578 (7%)
Query: 33 LSEAISSLDLLAQRGIRLPAE-TLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLS 91
S+A++S + G R P +L+ C L+ G+ VH + + +
Sbjct: 86 FSKALASFVEMRASG-RCPDHNVFPSVLKSCTMMMDLRFGESVHGFI-VRLGMDCDLYTG 143
Query: 92 NHLISMYFKC---GSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHA----RNLFDN 144
N L++MY K GS + VFD++P + S + + A +M R +F+
Sbjct: 144 NALMNMYAKLLGMGSKISVGNVFDEMPQRTSNSGDEDVK--AETCIMPFGIDSVRRVFEV 201
Query: 145 MAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLT 204
M +DVVS+NT+I GYA+SG E+ L+ + + + + F+ + +L I + ++
Sbjct: 202 MPRKDVVSYNTIIAGYAQSGMYEDALRMVREMGTTDLKPDSFTLSSVLPIFSEYVDVIKG 261
Query: 205 RQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKL 264
+++HG V+ G S+V I SS+VD Y AK
Sbjct: 262 KEIHGYVIRKGIDSDVYIGSSLVDMY-------------------------------AKS 290
Query: 265 GDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCL 324
+E + ++F+ + ++ +SW +L+AGY +NG +AL LF +M+ +++P FSS +
Sbjct: 291 ARIEDSERVFSRLYCRDGISWNSLVAGYVQNGRYNEALRLFRQMVTAKVKPGAVAFSSVI 350
Query: 325 CACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENS 384
ACA + +L GKQ+HG+++R F SN + S+L+DMYSKCG + R++FD N +
Sbjct: 351 PACAHLATLHLGKQLHGYVLRGGFGSNIFIASALVDMYSKCGNIKAARKIFDRM-NVLDE 409
Query: 385 MLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFES 444
+ W +I HG+ +A+ LF +M R VKP+++ +L AC+H GLV E YF S
Sbjct: 410 VSWTAIIMGHALHGHGHEAVSLFEEMKRQGVKPNQVAFVAVLTACSHVGLVDEAWGYFNS 469
Query: 445 MTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNID 504
MT G+ EH+A + +LL +AG ++ N + KM E +W+ L C +H N++
Sbjct: 470 MTKVYGLNQELEHYAAVADLLGRAGKLEEAYNFISKMCVEPTGSVWSTLLSSCSVHKNLE 529
Query: 505 MGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIE 564
+ KV +++ + ++ + L+ ++Y++ G+ + + K+R + ++ +K+ A SWIE++
Sbjct: 530 LAEKVAEKIFTVDSENMGAYVLMCNMYASNGRWKEMAKLRLRMRKKGLRKKPACSWIEMK 589
Query: 565 NKVHAFSVSDSLHPMRDVLYSVLEQLAGQMGEDAPSLD 602
NK H F D HP D + L+ + QM ++ D
Sbjct: 590 NKTHGFVSGDRSHPSMDKINEFLKAVMEQMEKEGYVAD 627
Score = 138 bits (347), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 87/317 (27%), Positives = 159/317 (50%), Gaps = 16/317 (5%)
Query: 125 MLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCN 184
++S Y NL ++ A LF + V++W ++I + + L + +R +
Sbjct: 45 VISIYTNLKLLHEALLLFKTLKSPPVLAWKSVIRCFTDQSLFSKALASFVEMRASGRCPD 104
Query: 185 EFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKC---GELSDARR 241
F +L C + +L+ VHG ++ G ++ +++++ YAK G
Sbjct: 105 HNVFPSVLKSCTMMMDLRFGESVHGFIVRLGMDCDLYTGNALMNMYAKLLGMGSKISVGN 164
Query: 242 LFDETDAR-------DVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTR 294
+FDE R DV T ++ G ++S ++F MP K+ VS+ T+IAGY +
Sbjct: 165 VFDEMPQRTSNSGDEDVKAETCIMP----FG-IDSVRRVFEVMPRKDVVSYNTIIAGYAQ 219
Query: 295 NGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIV 354
+G+ + AL + M ++P+ T SS L + V + GK++HG++IR S+ +
Sbjct: 220 SGMYEDALRMVREMGTTDLKPDSFTLSSVLPIFSEYVDVIKGKEIHGYVIRKGIDSDVYI 279
Query: 355 MSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSS 414
SSL+DMY+K + D +VF ++ + WN++++ Q+G +A+RLF MV +
Sbjct: 280 GSSLVDMYAKSARIEDSERVFSRLYCRDG-ISWNSLVAGYVQNGRYNEALRLFRQMVTAK 338
Query: 415 VKPDKITLAVILNACTH 431
VKP + + ++ AC H
Sbjct: 339 VKPGAVAFSSVIPACAH 355
Score = 111 bits (277), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 74/282 (26%), Positives = 132/282 (46%), Gaps = 36/282 (12%)
Query: 31 GQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFL 90
G +A+ + + ++ + TL+ +L +E + GK +H ++ + + ++
Sbjct: 221 GMYEDALRMVREMGTTDLKPDSFTLSSVLPIFSEYVDVIKGKEIHGYV-IRKGIDSDVYI 279
Query: 91 SNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDV 150
+ L+ MY K D+ +VF ++ ++ S+N++++GY G A LF M V
Sbjct: 280 GSSLVDMYAKSARIEDSERVFSRLYCRDGISWNSLVAGYVQNGRYNEALRLFRQMVTAKV 339
Query: 151 VSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQ 210
K GAV +F+ ++ C L L L +Q+HG
Sbjct: 340 -----------KPGAV--------------------AFSSVIPACAHLATLHLGKQLHGY 368
Query: 211 VLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESA 270
VL GF SN+ I+S++VD Y+KCG + AR++FD + D ++WT ++ G+A G A
Sbjct: 369 VLRGGFGSNIFIASALVDMYSKCGNIKAARKIFDRMNVLDEVSWTAIIMGHALHGHGHEA 428
Query: 271 SKLFNEMPEK----NPVSWTTLIAGYTRNGLGQKALELFTRM 308
LF EM + N V++ ++ + GL +A F M
Sbjct: 429 VSLFEEMKRQGVKPNQVAFVAVLTACSHVGLVDEAWGYFNSM 470
Score = 68.2 bits (165), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 57/229 (24%), Positives = 102/229 (44%), Gaps = 40/229 (17%)
Query: 237 SDARRL---FDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYT 293
S A++L F T + + + ++S Y L + A LF + ++W ++I +T
Sbjct: 22 SQAKQLHAQFIRTQSLSHTSASIVISIYTNLKLLHEALLLFKTLKSPPVLAWKSVIRCFT 81
Query: 294 RNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTI 353
L KAL F M P+ + F S L +C ++ L+ G+ VHGF++R +
Sbjct: 82 DQSLFSKALASFVEMRASGRCPDHNVFPSVLKSCTMMMDLRFGESVHGFIVRLGMDCDLY 141
Query: 354 VMSSLIDMYSKCGCL------------------NDG------------------RQVFDL 377
++L++MY+K + N G R+VF++
Sbjct: 142 TGNALMNMYAKLLGMGSKISVGNVFDEMPQRTSNSGDEDVKAETCIMPFGIDSVRRVFEV 201
Query: 378 TDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVIL 426
K+ + +NT+I+ Q G E A+R+ +M + +KPD TL+ +L
Sbjct: 202 MPRKD-VVSYNTIIAGYAQSGMYEDALRMVREMGTTDLKPDSFTLSSVL 249
Score = 63.5 bits (153), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 73/342 (21%), Positives = 144/342 (42%), Gaps = 61/342 (17%)
Query: 12 RKNLPNNCLIQSFLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLG 71
R + N L+ + + G+ +EA+ + ++ A + ++ CA +L LG
Sbjct: 306 RDGISWNSLVAGY---VQNGRYNEALRLFRQMVTAKVKPGAVAFSSVIPACAHLATLHLG 362
Query: 72 KRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYAN 131
K++H ++ L F+++ L+ MY KCG+ ARK+FD++ V + S+ ++ G+A
Sbjct: 363 KQLHGYV-LRGGFGSNIFIASALVDMYSKCGNIKAARKIFDRMNVLDEVSWTAIIMGHAL 421
Query: 132 LGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGI 191
G A +LF+ M +R + N+ +F +
Sbjct: 422 HGHGHEAVSLFEEM-------------------------------KRQGVKPNQVAFVAV 450
Query: 192 LTICVKLEELKLTRQVHG----QVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETD 247
LT C + L + G V G + +++ D + G+L +A +
Sbjct: 451 LTAC---SHVGLVDEAWGYFNSMTKVYGLNQELEHYAAVADLLGRAGKLEEAYNFISKMC 507
Query: 248 ARDVLT-WTTMVSGYAKLGDMESASKLFNEM---PEKNPVSWTTLIAGYTRNGLGQKALE 303
+ W+T++S + ++E A K+ ++ +N ++ + Y NG ++ +
Sbjct: 508 VEPTGSVWSTLLSSCSVHKNLELAEKVAEKIFTVDSENMGAYVLMCNMYASNGRWKEMAK 567
Query: 304 LFTRMMI--LRIRPNQHTFSSCLCACASIVSLKHGKQVHGFL 343
L RM LR +P AC S + +K+ + HGF+
Sbjct: 568 LRLRMRKKGLRKKP----------AC-SWIEMKN--KTHGFV 596
>sp|O64766|PP185_ARATH Pentatricopeptide repeat-containing protein At2g35030,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-E15 PE=2
SV=1
Length = 627
Score = 296 bits (757), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 167/530 (31%), Positives = 289/530 (54%), Gaps = 30/530 (5%)
Query: 93 HLISMYFKCGSDVDARKVFDKIPV-KNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVV 151
H+I+ Y K G +AR++FD++ KN+ ++ M+SGY + A LF M ER+VV
Sbjct: 82 HVITGYIKLGDMREARELFDRVDSRKNVVTWTAMVSGYLRSKQLSIAEMLFQEMPERNVV 141
Query: 152 SWNTMIIGYAKSGAVEEGLK-FYKVLRRFSISCNEFSFA----GILTICVKLEELKLTRQ 206
SWNTMI GYA+SG +++ L+ F ++ R +S N A G + + L E R
Sbjct: 142 SWNTMIDGYAQSGRIDKALELFDEMPERNIVSWNSMVKALVQRGRIDEAMNLFERMPRRD 201
Query: 207 V-HGQVLVTGFLSN-----------------VVISSSIVDAYAKCGELSDARRLFDETDA 248
V +V G N ++ ++++ YA+ + +A +LF
Sbjct: 202 VVSWTAMVDGLAKNGKVDEARRLFDCMPERNIISWNAMITGYAQNNRIDEADQLFQVMPE 261
Query: 249 RDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRM 308
RD +W TM++G+ + +M A LF+ MPEKN +SWTT+I GY N ++AL +F++M
Sbjct: 262 RDFASWNTMITGFIRNREMNKACGLFDRMPEKNVISWTTMITGYVENKENEEALNVFSKM 321
Query: 309 MILR---IRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKC 365
LR ++PN T+ S L AC+ + L G+Q+H + ++ + N IV S+L++MYSK
Sbjct: 322 --LRDGSVKPNVGTYVSILSACSDLAGLVEGQQIHQLISKSVHQKNEIVTSALLNMYSKS 379
Query: 366 GCLNDGRQVFDLTDNKENSML-WNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAV 424
G L R++FD + ++ WN+MI+ HG+ ++AI +++ M + KP +T
Sbjct: 380 GELIAARKMFDNGLVCQRDLISWNSMIAVYAHHGHGKEAIEMYNQMRKHGFKPSAVTYLN 439
Query: 425 ILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYE 484
+L AC+H+GLV++G+ +F+ + D + +EH+ CL++L +AG + N +
Sbjct: 440 LLFACSHAGLVEKGMEFFKDLVRDESLPLREEHYTCLVDLCGRAGRLKDVTNFINCDDAR 499
Query: 485 HDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVR 544
+ A+ C +H + + ++VV ++++ + T+ L+S+IY+A GK ++R
Sbjct: 500 LSRSFYGAILSACNVHNEVSIAKEVVKKVLETGSDDAGTYVLMSNIYAANGKREEAAEMR 559
Query: 545 QLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQM 594
+ E+ KK+ SW+++ + H F V D HP + L S+L L +M
Sbjct: 560 MKMKEKGLKKQPGCSWVKVGKQNHLFVVGDKSHPQFEALDSILSDLRNKM 609
>sp|Q9C501|PPR70_ARATH Pentatricopeptide repeat-containing protein At1g33350
OS=Arabidopsis thaliana GN=PCMP-E57 PE=2 SV=1
Length = 538
Score = 296 bits (757), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 158/464 (34%), Positives = 260/464 (56%), Gaps = 9/464 (1%)
Query: 135 MKHARNLFDNMAERDVVSWNTMIIGYAKSGAVE--EGLKFYKVLRRFSIS-CNEFSFAGI 191
+ +AR +FD + + + ++ Y+ S + F++++ S+ N F + +
Sbjct: 73 LSYARFIFDRFSFPNTHLYAAVLTAYSSSLPLHASSAFSFFRLMVNRSVPRPNHFIYPLV 132
Query: 192 LTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAK-CGELSDARRLFDETDARD 250
L L T VH + +GF VV+ ++++ +YA ++ AR+LFDE R+
Sbjct: 133 LKSTPYLSSAFSTPLVHTHLFKSGFHLYVVVQTALLHSYASSVSHITLARQLFDEMSERN 192
Query: 251 VLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMM- 309
V++WT M+SGYA+ GD+ +A LF +MPE++ SW ++A T+NGL +A+ LF RM+
Sbjct: 193 VVSWTAMLSGYARSGDISNAVALFEDMPERDVPSWNAILAACTQNGLFLEAVSLFRRMIN 252
Query: 310 ILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLN 369
IRPN+ T L ACA +L+ K +H F R + S+ V +SL+D+Y KCG L
Sbjct: 253 EPSIRPNEVTVVCVLSACAQTGTLQLAKGIHAFAYRRDLSSDVFVSNSLVDLYGKCGNLE 312
Query: 370 DGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVR---SSVKPDKITLAVIL 426
+ VF + +K++ WN+MI+ HG E+AI +F +M++ + +KPD IT +L
Sbjct: 313 EASSVFKMA-SKKSLTAWNSMINCFALHGRSEEAIAVFEEMMKLNINDIKPDHITFIGLL 371
Query: 427 NACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHD 486
NACTH GLV +G YF+ MT+ GI P EH+ CLI+LL +AG D+ + + M + D
Sbjct: 372 NACTHGGLVSKGRGYFDLMTNRFGIEPRIEHYGCLIDLLGRAGRFDEALEVMSTMKMKAD 431
Query: 487 SYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQL 546
+W +L C+IHG++D+ V L+ NP + +++++Y +G + R++
Sbjct: 432 EAIWGSLLNACKIHGHLDLAEVAVKNLVALNPNNGGYVAMMANLYGEMGNWEEARRARKM 491
Query: 547 INERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQL 590
I + K S IEI+N+VH F D HP + +Y +L+ L
Sbjct: 492 IKHQNAYKPPGWSRIEIDNEVHQFYSLDKSHPETEEIYMILDSL 535
Score = 126 bits (316), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 101/401 (25%), Positives = 171/401 (42%), Gaps = 36/401 (8%)
Query: 10 INRKNLPNNCLIQSFLSLISKG---QLSEAISSLDLLAQRGIRLPAETL-AFILQQCAES 65
+R + PN L + L+ S S A S L+ R + P + +L+
Sbjct: 80 FDRFSFPNTHLYAAVLTAYSSSLPLHASSAFSFFRLMVNRSVPRPNHFIYPLVLKSTPYL 139
Query: 66 KSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVD-ARKVFDKIPVKNLFSYNN 124
S VH HL + L+ Y S + AR++FD++ +N+ S+
Sbjct: 140 SSAFSTPLVHTHL-FKSGFHLYVVVQTALLHSYASSVSHITLARQLFDEMSERNVVSWTA 198
Query: 125 MLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLK-FYKVLRRFSISC 183
MLSGYA G + +A LF++M ERDV SWN ++ ++G E + F +++ SI
Sbjct: 199 MLSGYARSGDISNAVALFEDMPERDVPSWNAILAACTQNGLFLEAVSLFRRMINEPSIRP 258
Query: 184 NEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLF 243
NE + +L+ C + L+L + +H S+V +S+S+VD Y KCG L +A +F
Sbjct: 259 NEVTVVCVLSACAQTGTLQLAKGIHAFAYRRDLSSDVFVSNSLVDLYGKCGNLEEASSVF 318
Query: 244 DETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALE 303
+ + W +M++ +A G E A +F EM + N
Sbjct: 319 KMASKKSLTAWNSMINCFALHGRSEEAIAVFEEMMKLN---------------------- 356
Query: 304 LFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLI-RTNFRSNTIVMSSLIDMY 362
I I+P+ TF L AC + G+ + R LID+
Sbjct: 357 ------INDIKPDHITFIGLLNACTHGGLVSKGRGYFDLMTNRFGIEPRIEHYGCLIDLL 410
Query: 363 SKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQA 403
+ G ++ +V K + +W ++++A HG+ + A
Sbjct: 411 GRAGRFDEALEVMSTMKMKADEAIWGSLLNACKIHGHLDLA 451
>sp|Q9SUH6|PP341_ARATH Pentatricopeptide repeat-containing protein At4g30700
OS=Arabidopsis thaliana GN=DYW9 PE=2 SV=1
Length = 792
Score = 296 bits (757), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 178/544 (32%), Positives = 275/544 (50%), Gaps = 73/544 (13%)
Query: 123 NNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSIS 182
+N++ Y ++ AR +FD M E+D + WNTMI GY K+ E ++ ++ L + S
Sbjct: 158 SNIVKMYFKFWRVEDARKVFDRMPEKDTILWNTMISGYRKNEMYVESIQVFRDL--INES 215
Query: 183 CNEF---SFAGILTICVKLEELKLTRQVHG----------QVLVTGFLS----------- 218
C + IL +L+EL+L Q+H ++TGF+S
Sbjct: 216 CTRLDTTTLLDILPAVAELQELRLGMQIHSLATKTGCYSHDYVLTGFISLYSKCGKIKMG 275
Query: 219 ----------NVVISSSIVDAYAKCGELSDARRLFDE---TDAR---DVLTWTTMVSG-- 260
++V ++++ Y GE + LF E + AR L VSG
Sbjct: 276 SALFREFRKPDIVAYNAMIHGYTSNGETELSLSLFKELMLSGARLRSSTLVSLVPVSGHL 335
Query: 261 ----------------------------YAKLGDMESASKLFNEMPEKNPVSWTTLIAGY 292
Y+KL ++ESA KLF+E PEK+ SW +I+GY
Sbjct: 336 MLIYAIHGYCLKSNFLSHASVSTALTTVYSKLNEIESARKLFDESPEKSLPSWNAMISGY 395
Query: 293 TRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNT 352
T+NGL + A+ LF M PN T + L ACA + +L GK VH + T+F S+
Sbjct: 396 TQNGLTEDAISLFREMQKSEFSPNPVTITCILSACAQLGALSLGKWVHDLVRSTDFESSI 455
Query: 353 IVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVR 412
V ++LI MY+KCG + + R++FDL K+N + WNTMIS HG ++A+ +F++M+
Sbjct: 456 YVSTALIGMYAKCGSIAEARRLFDLM-TKKNEVTWNTMISGYGLHGQGQEALNIFYEMLN 514
Query: 413 SSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSD 472
S + P +T +L AC+H+GLV+EG F SM H G P+ +H+AC++++L +AG
Sbjct: 515 SGITPTPVTFLCVLYACSHAGLVKEGDEIFNSMIHRYGFEPSVKHYACMVDILGRAGHLQ 574
Query: 473 QLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYS 532
+ + +E M E S +W L G CRIH + ++ R V ++L + +P + H LLS+I+S
Sbjct: 575 RALQFIEAMSIEPGSSVWETLLGACRIHKDTNLARTVSEKLFELDPDNVGYHVLLSNIHS 634
Query: 533 ALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAG 592
A VRQ +R+ K + IEI H F+ D HP +Y LE+L G
Sbjct: 635 ADRNYPQAATVRQTAKKRKLAKAPGYTLIEIGETPHVFTSGDQSHPQVKEIYEKLEKLEG 694
Query: 593 QMGE 596
+M E
Sbjct: 695 KMRE 698
Score = 132 bits (333), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 110/451 (24%), Positives = 183/451 (40%), Gaps = 103/451 (22%)
Query: 89 FLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAER 148
L ++++ MYFK DARKVFD++P K+ +N M+SGY M + +F ++
Sbjct: 155 LLGSNIVKMYFKFWRVEDARKVFDRMPEKDTILWNTMISGYRKNEMYVESIQVFRDLINE 214
Query: 149 DVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVH 208
+T + IL +L+EL+L Q+H
Sbjct: 215 SCTRLDTT------------------------------TLLDILPAVAELQELRLGMQIH 244
Query: 209 GQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDME 268
TG S+ + + + Y+KCG++ LF E D++ + M+ GY
Sbjct: 245 SLATKTGCYSHDYVLTGFISLYSKCGKIKMGSALFREFRKPDIVAYNAMIHGY------- 297
Query: 269 SASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACA 328
T NG + +L LF +M+ R T S +
Sbjct: 298 ------------------------TSNGETELSLSLFKELMLSGARLRSSTLVSLVPVSG 333
Query: 329 SIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSML-W 387
++ + +HG+ +++NF S+ V ++L +YSK + R++FD ++ E S+ W
Sbjct: 334 HLMLI---YAIHGYCLKSNFLSHASVSTALTTVYSKLNEIESARKLFD--ESPEKSLPSW 388
Query: 388 NTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTH 447
N MIS TQ+G E AI LF +M +S P+ +T+ IL+AC G + G H
Sbjct: 389 NAMISGYTQNGLTEDAISLFREMQKSEFSPNPVTITCILSACAQLGALSLG-----KWVH 443
Query: 448 DLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGR 507
DL + +E Y+ AL G+ G+I R
Sbjct: 444 DL----------------------------VRSTDFESSIYVSTALIGMYAKCGSIAEAR 475
Query: 508 KVVDQLIDQNPQSSATHGLLSSIYSALGKGR 538
++ D + +N T + S Y G+G+
Sbjct: 476 RLFDLMTKKN---EVTWNTMISGYGLHGQGQ 503
Score = 107 bits (267), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 80/307 (26%), Positives = 145/307 (47%), Gaps = 32/307 (10%)
Query: 130 ANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFS-ISCNEFSF 188
++LG + +AR++F ++ DV +N ++ G++ + + L + LR+ + + N ++
Sbjct: 63 SDLGAIYYARDIFLSVQRPDVFLFNVLMRGFSVNESPHSSLSVFAHLRKSTDLKPNSSTY 122
Query: 189 AGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDA 248
A ++ + + R +HGQ +V G S +++ S+IV Y K + DAR++FD
Sbjct: 123 AFAISAASGFRDDRAGRVIHGQAVVDGCDSELLLGSNIVKMYFKFWRVEDARKVFDRMPE 182
Query: 249 RDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRM 308
+D + W TM+SGY K NEM ++ + LI E TR+
Sbjct: 183 KDTILWNTMISGYRK-----------NEMYVESIQVFRDLIN------------ESCTRL 219
Query: 309 MILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCL 368
+ T L A A + L+ G Q+H +T S+ V++ I +YSKCG +
Sbjct: 220 -------DTTTLLDILPAVAELQELRLGMQIHSLATKTGCYSHDYVLTGFISLYSKCGKI 272
Query: 369 NDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNA 428
G +F K + + +N MI T +G E ++ LF +++ S + TL ++
Sbjct: 273 KMGSALFR-EFRKPDIVAYNAMIHGYTSNGETELSLSLFKELMLSGARLRSSTLVSLVPV 331
Query: 429 CTHSGLV 435
H L+
Sbjct: 332 SGHLMLI 338
Score = 38.5 bits (88), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 34/168 (20%), Positives = 76/168 (45%), Gaps = 14/168 (8%)
Query: 332 SLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMI 391
S+ H Q H +I FR++ +++ L S G + R +F L+ + + L+N ++
Sbjct: 32 SISHLAQTHAQIILHGFRNDISLLTKLTQRLSDLGAIYYARDIF-LSVQRPDVFLFNVLM 90
Query: 392 SALTQHGYDEQAIRLFHDMVRSS-VKPDKITLAVILNACT-----HSGLVQEGLTYFESM 445
+ + ++ +F + +S+ +KP+ T A ++A + +G V G +
Sbjct: 91 RGFSVNESPHSSLSVFAHLRKSTDLKPNSSTYAFAISAASGFRDDRAGRVIHGQAVVDGC 150
Query: 446 THDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNAL 493
+L + N ++++ + + ++MP E D+ LWN +
Sbjct: 151 DSELLLGSN------IVKMYFKFWRVEDARKVFDRMP-EKDTILWNTM 191
>sp|Q9FWA6|PP207_ARATH Pentatricopeptide repeat-containing protein At3g02330
OS=Arabidopsis thaliana GN=PCMP-E90 PE=2 SV=2
Length = 903
Score = 295 bits (756), Expect = 5e-79, Method: Compositional matrix adjust.
Identities = 166/553 (30%), Positives = 284/553 (51%), Gaps = 46/553 (8%)
Query: 43 LAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCG 102
L G+ +L+ + + CA K L G +++ L + + ++N I MY KC
Sbjct: 373 LMSSGLGFDEISLSGVFRACALVKGLSEGLQIY-GLAIKSSLSLDVCVANAAIDMYGKCQ 431
Query: 103 SDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAK 162
+ +A +VFD+ M RD VSWN +I + +
Sbjct: 432 ALAEAFRVFDE-------------------------------MRRRDAVSWNAIIAAHEQ 460
Query: 163 SGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVI 222
+G E L + + R I +EF+F IL C L ++H ++ +G SN +
Sbjct: 461 NGKGYETLFLFVSMLRSRIEPDEFTFGSILKACTG-GSLGYGMEIHSSIVKSGMASNSSV 519
Query: 223 SSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNP 282
S++D Y+KCG + +A ++ R ++ G ME K+ N+ ++
Sbjct: 520 GCSLIDMYSKCGMIEEAEKIHSRFFQRANVS-----------GTMEELEKMHNKRLQEMC 568
Query: 283 VSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGF 342
VSW ++I+GY + A LFTRMM + I P++ T+++ L CA++ S GKQ+H
Sbjct: 569 VSWNSIISGYVMKEQSEDAQMLFTRMMEMGITPDKFTYATVLDTCANLASAGLGKQIHAQ 628
Query: 343 LIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQ 402
+I+ +S+ + S+L+DMYSKCG L+D R +F+ + + + WN MI HG E+
Sbjct: 629 VIKKELQSDVYICSTLVDMYSKCGDLHDSRLMFE-KSLRRDFVTWNAMICGYAHHGKGEE 687
Query: 403 AIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLI 462
AI+LF M+ ++KP+ +T IL AC H GL+ +GL YF M D G+ P H++ ++
Sbjct: 688 AIQLFERMILENIKPNHVTFISILRACAHMGLIDKGLEYFYMMKRDYGLDPQLPHYSNMV 747
Query: 463 ELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIH-GNIDMGRKVVDQLIDQNPQSS 521
++L ++G + + + +MP+E D +W L GVC IH N+++ + L+ +PQ S
Sbjct: 748 DILGKSGKVKRALELIREMPFEADDVIWRTLLGVCTIHRNNVEVAEEATAALLRLDPQDS 807
Query: 522 ATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRD 581
+ + LLS++Y+ G V +R+ + + KKE SW+E+++++H F V D HP +
Sbjct: 808 SAYTLLSNVYADAGMWEKVSDLRRNMRGFKLKKEPGCSWVELKDELHVFLVGDKAHPRWE 867
Query: 582 VLYSVLEQLAGQM 594
+Y L + +M
Sbjct: 868 EIYEELGLIYSEM 880
Score = 202 bits (515), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 115/388 (29%), Positives = 213/388 (54%), Gaps = 33/388 (8%)
Query: 55 LAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKI 114
+F+ ++CA+ +L+LGK+ H H+ ++ + PTTF+ N L+ +Y V A VFDK+
Sbjct: 51 FSFVFKECAKQGALELGKQAHAHMIISGFR-PTTFVLNCLLQVYTNSRDFVSASMVFDKM 109
Query: 115 PVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYK 174
P++++ S+N M++GY+ M A + F+ M RDVVSWN+M+ GY ++G + ++ +
Sbjct: 110 PLRDVVSWNKMINGYSKSNDMFKANSFFNMMPVRDVVSWNSMLSGYLQNGESLKSIEVFV 169
Query: 175 VLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCG 234
+ R I + +FA IL +C LE+ L Q+HG V+ G ++VV +S+++D YAK
Sbjct: 170 DMGREGIEFDGRTFAIILKVCSFLEDTSLGMQIHGIVVRVGCDTDVVAASALLDMYAKGK 229
Query: 235 ELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTR 294
++ R+F ++ ++W+ ++ AG +
Sbjct: 230 RFVESLRVFQGIPEKNSVSWSAII-------------------------------AGCVQ 258
Query: 295 NGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIV 354
N L AL+ F M + +Q ++S L +CA++ L+ G Q+H ++++F ++ IV
Sbjct: 259 NNLLSLALKFFKEMQKVNAGVSQSIYASVLRSCAALSELRLGGQLHAHALKSDFAADGIV 318
Query: 355 MSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSS 414
++ +DMY+KC + D + +FD ++N N +N MI+ +Q + +A+ LFH ++ S
Sbjct: 319 RTATLDMYAKCDNMQDAQILFDNSENL-NRQSYNAMITGYSQEEHGFKALLLFHRLMSSG 377
Query: 415 VKPDKITLAVILNACTHSGLVQEGLTYF 442
+ D+I+L+ + AC + EGL +
Sbjct: 378 LGFDEISLSGVFRACALVKGLSEGLQIY 405
Score = 155 bits (393), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 113/441 (25%), Positives = 202/441 (45%), Gaps = 69/441 (15%)
Query: 32 QLSEAISSLDL---LAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTT 88
Q E++ S+++ + + GI T A IL+ C+ + LG ++H + T
Sbjct: 157 QNGESLKSIEVFVDMGREGIEFDGRTFAIILKVCSFLEDTSLGMQIHGIVVRVGCDTDVV 216
Query: 89 FLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAER 148
++ L+ MY K V++ +VF IP E+
Sbjct: 217 -AASALLDMYAKGKRFVESLRVFQGIP-------------------------------EK 244
Query: 149 DVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVH 208
+ VSW+ +I G ++ + LKF+K +++ + ++ +A +L C L EL+L Q+H
Sbjct: 245 NSVSWSAIIAGCVQNNLLSLALKFFKEMQKVNAGVSQSIYASVLRSCAALSELRLGGQLH 304
Query: 209 GQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDME 268
L + F ++ ++ ++ +D YAKC +M+
Sbjct: 305 AHALKSDFAADGIVRTATLDMYAKCD-------------------------------NMQ 333
Query: 269 SASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACA 328
A LF+ N S+ +I GY++ G KAL LF R+M + ++ + S ACA
Sbjct: 334 DAQILFDNSENLNRQSYNAMITGYSQEEHGFKALLLFHRLMSSGLGFDEISLSGVFRACA 393
Query: 329 SIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWN 388
+ L G Q++G I+++ + V ++ IDMY KC L + +VFD + +++ WN
Sbjct: 394 LVKGLSEGLQIYGLAIKSSLSLDVCVANAAIDMYGKCQALAEAFRVFDEM-RRRDAVSWN 452
Query: 389 TMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHD 448
+I+A Q+G + + LF M+RS ++PD+ T IL ACT G + G+ S+
Sbjct: 453 AIIAAHEQNGKGYETLFLFVSMLRSRIEPDEFTFGSILKACT-GGSLGYGMEIHSSIVKS 511
Query: 449 LGIIPNQEHHACLIELLAQAG 469
G+ N LI++ ++ G
Sbjct: 512 -GMASNSSVGCSLIDMYSKCG 531
Score = 145 bits (367), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 131/520 (25%), Positives = 213/520 (40%), Gaps = 115/520 (22%)
Query: 56 AFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIP 115
A +L+ CA L+LG ++H H L + + MY KC +
Sbjct: 285 ASVLRSCAALSELRLGGQLHAH-ALKSDFAADGIVRTATLDMYAKCDN------------ 331
Query: 116 VKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKV 175
M+ A+ LFDN + S+N MI GY++ + L +
Sbjct: 332 -------------------MQDAQILFDNSENLNRQSYNAMITGYSQEEHGFKALLLFHR 372
Query: 176 LRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGE 235
L + +E S +G+ C ++ L Q++G + + +V ++++ +D Y KC
Sbjct: 373 LMSSGLGFDEISLSGVFRACALVKGLSEGLQIYGLAIKSSLSLDVCVANAAIDMYGKCQA 432
Query: 236 LSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRN 295
L++A R+FDE RD + SW +IA + +N
Sbjct: 433 LAEAFRVFDEMRRRDAV-------------------------------SWNAIIAAHEQN 461
Query: 296 GLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVM 355
G G + L LF M+ RI P++ TF S L AC SL +G ++H ++++ SN+ V
Sbjct: 462 GKGYETLFLFVSMLRSRIEPDEFTFGSILKACTG-GSLGYGMEIHSSIVKSGMASNSSVG 520
Query: 356 SSLIDMYSKCGCLNDGRQV----------------FDLTDNK---ENSMLWNTMISALTQ 396
SLIDMYSKCG + + ++ + NK E + WN++IS
Sbjct: 521 CSLIDMYSKCGMIEEAEKIHSRFFQRANVSGTMEELEKMHNKRLQEMCVSWNSIISGYVM 580
Query: 397 HGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQE 456
E A LF M+ + PDK T A +L+ C + L GL ++
Sbjct: 581 KEQSEDAQMLFTRMMEMGITPDKFTYATVLDTCAN--LASAGL--------------GKQ 624
Query: 457 HHACLI--ELLAQAGCSDQLMNQLEKMPYEHDSYL------------WNALHGVCRIHGN 502
HA +I EL + L++ K HDS L WNA+ HG
Sbjct: 625 IHAQVIKKELQSDVYICSTLVDMYSKCGDLHDSRLMFEKSLRRDFVTWNAMICGYAHHGK 684
Query: 503 IDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEK 542
+ ++ +++I +N + + H SI A L++K
Sbjct: 685 GEEAIQLFERMILENIKPN--HVTFISILRACAHMGLIDK 722
Score = 139 bits (351), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 82/286 (28%), Positives = 145/286 (50%), Gaps = 8/286 (2%)
Query: 148 RDVVSWN---TMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLT 204
R VVS+N T I Y + + F + S+S FSF + C K L+L
Sbjct: 12 RSVVSFNRCLTEKISYRRVPSFSYFTDFLNQVN--SVSTTNFSF--VFKECAKQGALELG 67
Query: 205 RQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKL 264
+Q H ++++GF + + ++ Y + A +FD+ RDV++W M++GY+K
Sbjct: 68 KQAHAHMIISGFRPTTFVLNCLLQVYTNSRDFVSASMVFDKMPLRDVVSWNKMINGYSKS 127
Query: 265 GDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCL 324
DM A+ FN MP ++ VSW ++++GY +NG K++E+F M I + TF+ L
Sbjct: 128 NDMFKANSFFNMMPVRDVVSWNSMLSGYLQNGESLKSIEVFVDMGREGIEFDGRTFAIIL 187
Query: 325 CACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENS 384
C+ + G Q+HG ++R ++ + S+L+DMY+K + +VF K NS
Sbjct: 188 KVCSFLEDTSLGMQIHGIVVRVGCDTDVVAASALLDMYAKGKRFVESLRVFQGIPEK-NS 246
Query: 385 MLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACT 430
+ W+ +I+ Q+ A++ F +M + + + A +L +C
Sbjct: 247 VSWSAIIAGCVQNNLLSLALKFFKEMQKVNAGVSQSIYASVLRSCA 292
Score = 68.6 bits (166), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 92/177 (51%), Gaps = 11/177 (6%)
Query: 10 INRKNLPNNCLIQSFLSLISKGQLSEAISSLDLLAQR----GIRLPAETLAFILQQCAES 65
++ K L C+ S+ S+IS + E +L R GI T A +L CA
Sbjct: 559 MHNKRLQEMCV--SWNSIISGYVMKEQSEDAQMLFTRMMEMGITPDKFTYATVLDTCANL 616
Query: 66 KSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNM 125
S LGK++H + + + ++ + L+ MY KCG D+R +F+K ++ ++N M
Sbjct: 617 ASAGLGKQIHAQV-IKKELQSDVYICSTLVDMYSKCGDLHDSRLMFEKSLRRDFVTWNAM 675
Query: 126 LSGYANLGMMKHARNLFDNMAERDV----VSWNTMIIGYAKSGAVEEGLKFYKVLRR 178
+ GYA+ G + A LF+ M ++ V++ +++ A G +++GL+++ +++R
Sbjct: 676 ICGYAHHGKGEEAIQLFERMILENIKPNHVTFISILRACAHMGLIDKGLEYFYMMKR 732
>sp|P0C899|PP271_ARATH Putative pentatricopeptide repeat-containing protein At3g49142
OS=Arabidopsis thaliana GN=PCMP-H77 PE=3 SV=1
Length = 686
Score = 294 bits (753), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 174/563 (30%), Positives = 285/563 (50%), Gaps = 50/563 (8%)
Query: 78 LKLTQRKTP--TTFLSNHLISMYFKCGSDVDA-RKVFDKIPVKNLFSYNNM----LSGYA 130
L+L Q K+P T FL ++ Y D+ R V +I +++L +++ + YA
Sbjct: 31 LELDQ-KSPQETVFLLGQVLDTY----PDIRTLRTVHSRIILEDLRCNSSLGVKLMRAYA 85
Query: 131 NLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAG 190
+L + AR +FD + ER+V+ N MI Y +G EG+K + + ++ + ++F
Sbjct: 86 SLKDVASARKVFDEIPERNVIIINVMIRSYVNNGFYGEGVKVFGTMCGCNVRPDHYTFPC 145
Query: 191 ILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARD 250
+L C + + R++HG G S + + + +V Y KCG LS+AR + DE RD
Sbjct: 146 VLKACSCSGTIVIGRKIHGSATKVGLSSTLFVGNGLVSMYGKCGFLSEARLVLDEMSRRD 205
Query: 251 VLTWTTMVSGYAK----------LGDMESAS---------------------------KL 273
V++W ++V GYA+ +MES +
Sbjct: 206 VVSWNSLVVGYAQNQRFDDALEVCREMESVKISHDAGTMASLLPAVSNTTTENVMYVKDM 265
Query: 274 FNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSL 333
F +M +K+ VSW +I Y +N + +A+EL++RM P+ + +S L AC +L
Sbjct: 266 FFKMGKKSLVSWNVMIGVYMKNAMPVEAVELYSRMEADGFEPDAVSITSVLPACGDTSAL 325
Query: 334 KHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISA 393
GK++HG++ R N ++ ++LIDMY+KCGCL R VF+ +++ + W MISA
Sbjct: 326 SLGKKIHGYIERKKLIPNLLLENALIDMYAKCGCLEKARDVFENMKSRD-VVSWTAMISA 384
Query: 394 LTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIP 453
G A+ LF + S + PD I L AC+H+GL++EG + F+ MT I P
Sbjct: 385 YGFSGRGCDAVALFSKLQDSGLVPDSIAFVTTLAACSHAGLLEEGRSCFKLMTDHYKITP 444
Query: 454 NQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQL 513
EH AC+++LL +AG + ++ M E + +W AL G CR+H + D+G D+L
Sbjct: 445 RLEHLACMVDLLGRAGKVKEAYRFIQDMSMEPNERVWGALLGACRVHSDTDIGLLAADKL 504
Query: 514 IDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVS 573
P+ S + LLS+IY+ G+ V +R ++ + KK S +E+ +H F V
Sbjct: 505 FQLAPEQSGYYVLLSNIYAKAGRWEEVTNIRNIMKSKGLKKNPGASNVEVNRIIHTFLVG 564
Query: 574 DSLHPMRDVLYSVLEQLAGQMGE 596
D HP D +Y L+ L +M E
Sbjct: 565 DRSHPQSDEIYRELDVLVKKMKE 587
Score = 127 bits (320), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 94/420 (22%), Positives = 181/420 (43%), Gaps = 77/420 (18%)
Query: 18 NCLIQSFLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLH 77
N +I+S+ ++ G E + + +R T +L+ C+ S ++ +G+++H
Sbjct: 109 NVMIRSY---VNNGFYGEGVKVFGTMCGCNVRPDHYTFPCVLKACSCSGTIVIGRKIHGS 165
Query: 78 LKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYA------- 130
+ T F+ N L+SMY KCG +AR V D++ +++ S+N+++ GYA
Sbjct: 166 ATKVGLSS-TLFVGNGLVSMYGKCGFLSEARLVLDEMSRRDVVSWNSLVVGYAQNQRFDD 224
Query: 131 ---------------NLGMMK---------------HARNLFDNMAERDVVSWNTMIIGY 160
+ G M + +++F M ++ +VSWN MI Y
Sbjct: 225 ALEVCREMESVKISHDAGTMASLLPAVSNTTTENVMYVKDMFFKMGKKSLVSWNVMIGVY 284
Query: 161 AKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNV 220
K+ E ++ Y + + S +L C L L +++HG + + N+
Sbjct: 285 MKNAMPVEAVELYSRMEADGFEPDAVSITSVLPACGDTSALSLGKKIHGYIERKKLIPNL 344
Query: 221 VISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEK 280
++ ++++D YAKCG L AR +F+ +RDV++WT M+S Y
Sbjct: 345 LLENALIDMYAKCGCLEKARDVFENMKSRDVVSWTAMISAY------------------- 385
Query: 281 NPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVH 340
G++ G G A+ LF+++ + P+ F + L AC+ L+ G+
Sbjct: 386 ----------GFS--GRGCDAVALFSKLQDSGLVPDSIAFVTTLAACSHAGLLEEGRSC- 432
Query: 341 GFLIRTNFRSNTIVMSSL---IDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQH 397
F + T+ T + L +D+ + G + + + + N +W ++ A H
Sbjct: 433 -FKLMTDHYKITPRLEHLACMVDLLGRAGKVKEAYRFIQDMSMEPNERVWGALLGACRVH 491
>sp|Q9SN39|PP320_ARATH Pentatricopeptide repeat-containing protein At4g18750,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H45 PE=2
SV=1
Length = 871
Score = 293 bits (751), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 165/574 (28%), Positives = 296/574 (51%), Gaps = 65/574 (11%)
Query: 28 ISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPT 87
+S G + +S + GI + T+ + CA+S+ + LG+ VH + + +
Sbjct: 272 VSNGLAEKGLSVFVQMLVSGIEIDLATIVSVFAGCADSRLISLGRAVH-SIGVKACFSRE 330
Query: 88 TFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAE 147
N L+ MY KCG D+D+ A+ +F M++
Sbjct: 331 DRFCNTLLDMYSKCG-DLDS------------------------------AKAVFREMSD 359
Query: 148 RDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQV 207
R VVS+ +MI GYA+ G E +K ++ + IS + ++ +L C + L ++V
Sbjct: 360 RSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARYRLLDEGKRV 419
Query: 208 HGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDM 267
H + ++ +S++++D YAKC G M
Sbjct: 420 HEWIKENDLGFDIFVSNALMDMYAKC-------------------------------GSM 448
Query: 268 ESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMI-LRIRPNQHTFSSCLCA 326
+ A +F+EM K+ +SW T+I GY++N +AL LF ++ R P++ T + L A
Sbjct: 449 QEAELVFSEMRVKDIISWNTIIGGYSKNCYANEALSLFNLLLEEKRFSPDERTVACVLPA 508
Query: 327 CASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSML 386
CAS+ + G+++HG+++R + S+ V +SL+DMY+KCG L +FD +K+ +
Sbjct: 509 CASLSAFDKGREIHGYIMRNGYFSDRHVANSLVDMYAKCGALLLAHMLFDDIASKD-LVS 567
Query: 387 WNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMT 446
W MI+ HG+ ++AI LF+ M ++ ++ D+I+ +L AC+HSGLV EG +F M
Sbjct: 568 WTVMIAGYGMHGFGKEAIALFNQMRQAGIEADEISFVSLLYACSHSGLVDEGWRFFNIMR 627
Query: 447 HDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMG 506
H+ I P EH+AC++++LA+ G + +E MP D+ +W AL CRIH ++ +
Sbjct: 628 HECKIEPTVEHYACIVDMLARTGDLIKAYRFIENMPIPPDATIWGALLCGCRIHHDVKLA 687
Query: 507 RKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENK 566
KV +++ + P+++ + L+++IY+ K V+++R+ I +R +K SWIEI+ +
Sbjct: 688 EKVAEKVFELEPENTGYYVLMANIYAEAEKWEQVKRLRKRIGQRGLRKNPGCSWIEIKGR 747
Query: 567 VHAFSVSDSLHPMRDVLYSVLEQLAGQMGEDAPS 600
V+ F DS +P + + + L ++ +M E+ S
Sbjct: 748 VNIFVAGDSSNPETENIEAFLRKVRARMIEEGYS 781
Score = 145 bits (366), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 114/451 (25%), Positives = 196/451 (43%), Gaps = 76/451 (16%)
Query: 50 LPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARK 109
+ TL +LQ CA+SKSLK GK V ++ + L + L MY CG +A +
Sbjct: 92 IDPRTLCSVLQLCADSKSLKDGKEVDNFIRGNGFVIDSN-LGSKLSLMYTNCGDLKEASR 150
Query: 110 VFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEG 169
VFD++ ++ + LF WN ++ AKSG
Sbjct: 151 VFDEVKIE---------------------KALF----------WNILMNELAKSGDFSGS 179
Query: 170 LKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDA 229
+ +K + + + ++F+ + L + Q+HG +L +GF + +S+V
Sbjct: 180 IGLFKKMMSSGVEMDSYTFSCVSKSFSSLRSVHGGEQLHGFILKSGFGERNSVGNSLVAF 239
Query: 230 YAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLI 289
Y K + AR++FDE RDV++W ++++GY
Sbjct: 240 YLKNQRVDSARKVFDEMTERDVISWNSIINGYVS-------------------------- 273
Query: 290 AGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFR 349
NGL +K L +F +M++ I + T S CA + G+ VH ++ F
Sbjct: 274 -----NGLAEKGLSVFVQMLVSGIEIDLATIVSVFAGCADSRLISLGRAVHSIGVKACFS 328
Query: 350 SNTIVMSSLIDMYSKCGCLNDGRQVF-DLTDNKENSMLWNTMISALTQHGYDEQAIRLFH 408
++L+DMYSKCG L+ + VF +++D S + +MI+ + G +A++LF
Sbjct: 329 REDRFCNTLLDMYSKCGDLDSAKAVFREMSDRSVVS--YTSMIAGYAREGLAGEAVKLFE 386
Query: 409 DMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMT-HDLG---IIPNQEHHACLIEL 464
+M + PD T+ +LN C L+ EG E + +DLG + N L+++
Sbjct: 387 EMEEEGISPDVYTVTAVLNCCARYRLLDEGKRVHEWIKENDLGFDIFVSNA-----LMDM 441
Query: 465 LAQAGCSDQLMNQLEKMPYEHDSYLWNALHG 495
A+ G + +M + D WN + G
Sbjct: 442 YAKCGSMQEAELVFSEMRVK-DIISWNTIIG 471
Score = 131 bits (330), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 87/296 (29%), Positives = 146/296 (49%), Gaps = 39/296 (13%)
Query: 21 IQSFLSLIS----KGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHL 76
+ S+ S+I+ +G EA+ + + + GI T+ +L CA + L GKRVH
Sbjct: 362 VVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARYRLLDEGKRVHE 421
Query: 77 HLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMK 136
+K F+SN L+ MY KCGS +A VF ++ VK++ S+N ++ GY+
Sbjct: 422 WIKENDLGFDI-FVSNALMDMYAKCGSMQEAELVFSEMRVKDIISWNTIIGGYSKNCYAN 480
Query: 137 HARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICV 196
A +LF+ + E +RFS +E + A +L C
Sbjct: 481 EALSLFNLLLEE----------------------------KRFSP--DERTVACVLPACA 510
Query: 197 KLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTT 256
L R++HG ++ G+ S+ +++S+VD YAKCG L A LFD+ ++D+++WT
Sbjct: 511 SLSAFDKGREIHGYIMRNGYFSDRHVANSLVDMYAKCGALLLAHMLFDDIASKDLVSWTV 570
Query: 257 MVSGYAKLGDMESASKLFNEMP----EKNPVSWTTLIAGYTRNGLGQKALELFTRM 308
M++GY G + A LFN+M E + +S+ +L+ + +GL + F M
Sbjct: 571 MIAGYGMHGFGKEAIALFNQMRQAGIEADEISFVSLLYACSHSGLVDEGWRFFNIM 626
Score = 105 bits (261), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 78/328 (23%), Positives = 146/328 (44%), Gaps = 41/328 (12%)
Query: 147 ERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQ 206
+R V NT + + +SG +E +K V ++ I + + +L +C + LK ++
Sbjct: 58 DRSVTDANTQLRRFCESGNLENAVKLLCVSGKWDI--DPRTLCSVLQLCADSKSLKDGKE 115
Query: 207 VHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGD 266
V + GF+ + + S + Y CG+L +A R+FDE L W +++ AK GD
Sbjct: 116 VDNFIRGNGFVIDSNLGSKLSLMYTNCGDLKEASRVFDEVKIEKALFWNILMNELAKSGD 175
Query: 267 MESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCA 326
++ LF +MM + + +TFS +
Sbjct: 176 FSG-------------------------------SIGLFKKMMSSGVEMDSYTFSCVSKS 204
Query: 327 CASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSML 386
+S+ S+ G+Q+HGF++++ F V +SL+ Y K ++ R+VFD + + +
Sbjct: 205 FSSLRSVHGGEQLHGFILKSGFGERNSVGNSLVAFYLKNQRVDSARKVFDEMTER-DVIS 263
Query: 387 WNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMT 446
WN++I+ +G E+ + +F M+ S ++ D T+ + C S L+ G
Sbjct: 264 WNSIINGYVSNGLAEKGLSVFVQMLVSGIEIDLATIVSVFAGCADSRLISLGRA-----V 318
Query: 447 HDLGIIP--NQEHHACLIELLAQAGCSD 472
H +G+ ++E C L + C D
Sbjct: 319 HSIGVKACFSREDRFCNTLLDMYSKCGD 346
>sp|Q9SVP7|PP307_ARATH Pentatricopeptide repeat-containing protein At4g13650
OS=Arabidopsis thaliana GN=PCMP-H42 PE=2 SV=2
Length = 1064
Score = 293 bits (750), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 164/573 (28%), Positives = 293/573 (51%), Gaps = 67/573 (11%)
Query: 27 LISKGQLSEAISSLDLLAQRGIR--LPAE-TLAFILQQCAESKSLKLGKRVHLHLKLTQR 83
L++ G L + +S + Q I +P + T IL+ C L+LG+++H
Sbjct: 462 LVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIH-------- 513
Query: 84 KTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFD 143
+ +I F+ N + + ++ YA LG + A ++
Sbjct: 514 --------SQIIKTNFQL----------------NAYVCSVLIDMYAKLGKLDTAWDILI 549
Query: 144 NMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKL 203
A +DVVSW TMI GY + ++ L ++ + I +E ++ C L+ LK
Sbjct: 550 RFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALKE 609
Query: 204 TRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAK 263
+Q+H Q V+GF S++ +++V Y++CG++
Sbjct: 610 GQQIHAQACVSGFSSDLPFQNALVTLYSRCGKI--------------------------- 642
Query: 264 LGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSC 323
E + F + + ++W L++G+ ++G ++AL +F RM I N TF S
Sbjct: 643 ----EESYLAFEQTEAGDNIAWNALVSGFQQSGNNEEALRVFVRMNREGIDNNNFTFGSA 698
Query: 324 LCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKEN 383
+ A + ++K GKQVH + +T + S T V ++LI MY+KCG ++D + F L + +N
Sbjct: 699 VKAASETANMKQGKQVHAVITKTGYDSETEVCNALISMYAKCGSISDAEKQF-LEVSTKN 757
Query: 384 SMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFE 443
+ WN +I+A ++HG+ +A+ F M+ S+V+P+ +TL +L+AC+H GLV +G+ YFE
Sbjct: 758 EVSWNAIINAYSKHGFGSEALDSFDQMIHSNVRPNHVTLVGVLSACSHIGLVDKGIAYFE 817
Query: 444 SMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNI 503
SM + G+ P EH+ C++++L +AG + +++MP + D+ +W L C +H N+
Sbjct: 818 SMNSEYGLSPKPEHYVCVVDMLTRAGLLSRAKEFIQEMPIKPDALVWRTLLSACVVHKNM 877
Query: 504 DMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEI 563
++G L++ P+ SAT+ LLS++Y+ K + RQ + E+ KKE SWIE+
Sbjct: 878 EIGEFAAHHLLELEPEDSATYVLLSNLYAVSKKWDARDLTRQKMKEKGVKKEPGQSWIEV 937
Query: 564 ENKVHAFSVSDSLHPMRDVLYSVLEQLAGQMGE 596
+N +H+F V D HP+ D ++ + L + E
Sbjct: 938 KNSIHSFYVGDQNHPLADEIHEYFQDLTKRASE 970
Score = 166 bits (421), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 137/533 (25%), Positives = 237/533 (44%), Gaps = 56/533 (10%)
Query: 18 NCLIQSFLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAES-KSLKLGKRVHL 76
N L+ + L G L A ++QR + TL L QC K+++L KR+HL
Sbjct: 327 NALVSLYFHL---GNLISAEHIFSNMSQRDA-VTYNTLINGLSQCGYGEKAMELFKRMHL 382
Query: 77 HLKLTQRKTPTTFLSNHLISMYFKCGSD--VDARKVFDKIPVKNLFSYNNMLSG-----Y 129
P SN L S+ C +D + + K F+ NN + G Y
Sbjct: 383 -----DGLEPD---SNTLASLVVACSADGTLFRGQQLHAYTTKLGFASNNKIEGALLNLY 434
Query: 130 ANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFA 189
A ++ A + F +VV WN M++ Y + + ++ ++ I N++++
Sbjct: 435 AKCADIETALDYFLETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYP 494
Query: 190 GILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDAR 249
IL C++L +L+L Q+H Q++ T F N + S ++D YAK
Sbjct: 495 SILKTCIRLGDLELGEQIHSQIIKTNFQLNAYVCSVLIDMYAK----------------- 537
Query: 250 DVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMM 309
LG +++A + K+ VSWTT+IAGYT+ KAL F +M+
Sbjct: 538 --------------LGKLDTAWDILIRFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQML 583
Query: 310 ILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLN 369
IR ++ ++ + ACA + +LK G+Q+H + F S+ ++L+ +YS+CG +
Sbjct: 584 DRGIRSDEVGLTNAVSACAGLQALKEGQQIHAQACVSGFSSDLPFQNALVTLYSRCGKIE 643
Query: 370 DGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNAC 429
+ F+ T+ +N + WN ++S Q G +E+A+R+F M R + + T + A
Sbjct: 644 ESYLAFEQTEAGDN-IAWNALVSGFQQSGNNEEALRVFVRMNREGIDNNNFTFGSAVKAA 702
Query: 430 THSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYL 489
+ + +++G +T G E LI + A+ G Q ++ +++
Sbjct: 703 SETANMKQGKQVHAVITKT-GYDSETEVCNALISMYAKCGSISDAEKQFLEVSTKNEVS- 760
Query: 490 WNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEK 542
WNA+ HG DQ+I N + + H L + SA LV+K
Sbjct: 761 WNAIINAYSKHGFGSEALDSFDQMIHSNVRPN--HVTLVGVLSACSHIGLVDK 811
Score = 166 bits (419), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 137/537 (25%), Positives = 234/537 (43%), Gaps = 108/537 (20%)
Query: 40 LDLLAQRGIRLPAETLAFILQQCAESK-SLKLGKRVHLHLKLTQRKTPTTFLSNHLISMY 98
+D + RGIR +TL ++L+ C ++ SL G+++H S
Sbjct: 72 IDSVENRGIRPNHQTLKWLLEGCLKTNGSLDEGRKLH--------------------SQI 111
Query: 99 FKCGSDVD---ARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNT 155
K G D + + K+FD K G + A +FD M ER + +WN
Sbjct: 112 LKLGLDSNGCLSEKLFDFYLFK---------------GDLYGAFKVFDEMPERTIFTWNK 156
Query: 156 MIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLE-ELKLTRQVHGQVLVT 214
MI A + E + + +++ NE +F+G+L C + Q+H ++L
Sbjct: 157 MIKELASRNLIGEVFGLFVRMVSENVTPNEGTFSGVLEACRGGSVAFDVVEQIHARILYQ 216
Query: 215 GFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLF 274
G + V+ + ++D Y++ G + ARR+FD +D +W M+SG +K
Sbjct: 217 GLRDSTVVCNPLIDLYSRNGFVDLARRVFDGLRLKDHSSWVAMISGLSK----------- 265
Query: 275 NEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLK 334
N +A+ LF M +L I P + FSS L AC I SL+
Sbjct: 266 --------------------NECEAEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLE 305
Query: 335 HGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISAL 394
G+Q+HG +++ F S+T V ++L+ +Y G L +F ++ +++ +NT+I+ L
Sbjct: 306 IGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGNLISAEHIFS-NMSQRDAVTYNTLINGL 364
Query: 395 TQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPN 454
+Q GY E+A+ LF M ++PD TLA ++ AC+ G + G + T LG N
Sbjct: 365 SQCGYGEKAMELFKRMHLDGLEPDSNTLASLVVACSADGTLFRG-QQLHAYTTKLGFASN 423
Query: 455 QEHHACLIELLAQA----------------------------GCSDQLMNQ---LEKMPY 483
+ L+ L A+ G D L N +M
Sbjct: 424 NKIEGALLNLYAKCADIETALDYFLETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQI 483
Query: 484 EH---DSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSA-THGLLSSIYSALGK 536
E + Y + ++ C G++++G ++ Q+I N Q +A +L +Y+ LGK
Sbjct: 484 EEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTNFQLNAYVCSVLIDMYAKLGK 540
Score = 149 bits (376), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 110/430 (25%), Positives = 205/430 (47%), Gaps = 47/430 (10%)
Query: 17 NNCLIQSFLSL-ISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVH 75
N CL + + KG L A D + +R I T ++++ A S++L +G+
Sbjct: 119 NGCLSEKLFDFYLFKGDLYGAFKVFDEMPERTIF----TWNKMIKELA-SRNL-IGEVFG 172
Query: 76 LHLKL-TQRKTPTTFLSNHLI------SMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSG 128
L +++ ++ TP + ++ S+ F + AR ++ + + N ++
Sbjct: 173 LFVRMVSENVTPNEGTFSGVLEACRGGSVAFDVVEQIHARILYQGLRDSTVVC-NPLIDL 231
Query: 129 YANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSF 188
Y+ G + AR +FD + +D SW MI G +K+ E ++ + + I ++F
Sbjct: 232 YSRNGFVDLARRVFDGLRLKDHSSWVAMISGLSKNECEAEAIRLFCDMYVLGIMPTPYAF 291
Query: 189 AGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDA 248
+ +L+ C K+E L++ Q+HG VL GF S+ + ++
Sbjct: 292 SSVLSACKKIESLEIGEQLHGLVLKLGFSSDTYVCNA----------------------- 328
Query: 249 RDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRM 308
+VS Y LG++ SA +F+ M +++ V++ TLI G ++ G G+KA+ELF RM
Sbjct: 329 --------LVSLYFHLGNLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRM 380
Query: 309 MILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCL 368
+ + P+ +T +S + AC++ +L G+Q+H + + F SN + +L+++Y+KC +
Sbjct: 381 HLDGLEPDSNTLASLVVACSADGTLFRGQQLHAYTTKLGFASNNKIEGALLNLYAKCADI 440
Query: 369 NDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNA 428
F L EN +LWN M+ A + R+F M + P++ T IL
Sbjct: 441 ETALDYF-LETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKT 499
Query: 429 CTHSGLVQEG 438
C G ++ G
Sbjct: 500 CIRLGDLELG 509
>sp|Q9FMA1|PP433_ARATH Pentatricopeptide repeat-containing protein At5g56310
OS=Arabidopsis thaliana GN=PCMP-E13 PE=2 SV=1
Length = 530
Score = 293 bits (749), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 149/470 (31%), Positives = 269/470 (57%), Gaps = 6/470 (1%)
Query: 130 ANLGMMKHARNLFDNMAERDVVSWNTMIIGYA---KSGAVEEGLKFYKVLRRFSISCNEF 186
+N G +++A ++F + + NTMI + + A + Y+ L + F
Sbjct: 58 SNAGHLRYAYSVFTHQPCPNTYLHNTMIRALSLLDEPNAHSIAITVYRKLWALCAKPDTF 117
Query: 187 SFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDET 246
+F +L I V++ ++ RQ+HGQV+V GF S+V + + ++ Y CG L DAR++FDE
Sbjct: 118 TFPFVLKIAVRVSDVWFGRQIHGQVVVFGFDSSVHVVTGLIQMYFSCGGLGDARKMFDEM 177
Query: 247 DARDVLTWTTMVSGYAKLGDMESASKLFNEMP--EKNPVSWTTLIAGYTRNGLGQKALEL 304
+DV W +++GY K+G+M+ A L MP +N VSWT +I+GY ++G +A+E+
Sbjct: 178 LVKDVNVWNALLAGYGKVGEMDEARSLLEMMPCWVRNEVSWTCVISGYAKSGRASEAIEV 237
Query: 305 FTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSK 364
F RM++ + P++ T + L ACA + SL+ G+++ ++ + +++IDMY+K
Sbjct: 238 FQRMLMENVEPDEVTLLAVLSACADLGSLELGERICSYVDHRGMNRAVSLNNAVIDMYAK 297
Query: 365 CGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAV 424
G + VF+ N+ N + W T+I+ L HG+ +A+ +F+ MV++ V+P+ +T
Sbjct: 298 SGNITKALDVFECV-NERNVVTWTTIIAGLATHGHGAEALAMFNRMVKAGVRPNDVTFIA 356
Query: 425 ILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYE 484
IL+AC+H G V G F SM GI PN EH+ C+I+LL +AG + ++ MP++
Sbjct: 357 ILSACSHVGWVDLGKRLFNSMRSKYGIHPNIEHYGCMIDLLGRAGKLREADEVIKSMPFK 416
Query: 485 HDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVR 544
++ +W +L +H ++++G + + +LI P +S + LL+++YS LG+ +R
Sbjct: 417 ANAAIWGSLLAASNVHHDLELGERALSELIKLEPNNSGNYMLLANLYSNLGRWDESRMMR 476
Query: 545 QLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQM 594
++ KK S IE+EN+V+ F D HP + ++ +L+++ Q+
Sbjct: 477 NMMKGIGVKKMAGESSIEVENRVYKFISGDLTHPQVERIHEILQEMDLQI 526
Score = 154 bits (388), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 96/362 (26%), Positives = 178/362 (49%), Gaps = 35/362 (9%)
Query: 54 TLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDK 113
T F+L+ + G+++H + + + ++ LI MYF CG DARK+FD+
Sbjct: 118 TFPFVLKIAVRVSDVWFGRQIHGQVVVFGFDSSVHVVTG-LIQMYFSCGGLGDARKMFDE 176
Query: 114 IPVKNLFSYNNMLSGYANLGMMKHARNLFDNMA--ERDVVSWNTMIIGYAKSGAVEEGLK 171
+ VK++ +N +L+GY +G M AR+L + M R+ VSW +I GYAKSG E ++
Sbjct: 177 MLVKDVNVWNALLAGYGKVGEMDEARSLLEMMPCWVRNEVSWTCVISGYAKSGRASEAIE 236
Query: 172 FYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYA 231
++ + ++ +E + +L+ C L L+L ++ V G V ++++++D YA
Sbjct: 237 VFQRMLMENVEPDEVTLLAVLSACADLGSLELGERICSYVDHRGMNRAVSLNNAVIDMYA 296
Query: 232 KCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAG 291
K G ++ A +F+ + R+V+TWTT+++G A
Sbjct: 297 KSGNITKALDVFECVNERNVVTWTTIIAGLAT---------------------------- 328
Query: 292 YTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFL-IRTNFRS 350
+G G +AL +F RM+ +RPN TF + L AC+ + + GK++ + +
Sbjct: 329 ---HGHGAEALAMFNRMVKAGVRPNDVTFIAILSACSHVGWVDLGKRLFNSMRSKYGIHP 385
Query: 351 NTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDM 410
N +ID+ + G L + +V K N+ +W ++++A H E R ++
Sbjct: 386 NIEHYGCMIDLLGRAGKLREADEVIKSMPFKANAAIWGSLLAASNVHHDLELGERALSEL 445
Query: 411 VR 412
++
Sbjct: 446 IK 447
Score = 56.2 bits (134), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 58/274 (21%), Positives = 120/274 (43%), Gaps = 15/274 (5%)
Query: 12 RKNLPNNCLIQSFLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLG 71
R + C+I + G+ SEAI + + TL +L CA+ SL+LG
Sbjct: 213 RNEVSWTCVISGY---AKSGRASEAIEVFQRMLMENVEPDEVTLLAVLSACADLGSLELG 269
Query: 72 KRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYAN 131
+R+ ++ + L+N +I MY K G+ A VF+ + +N+ ++ +++G A
Sbjct: 270 ERICSYVDHRGMNRAVS-LNNAVIDMYAKSGNITKALDVFECVNERNVVTWTTIIAGLAT 328
Query: 132 LGMMKHARNLFDNMAERDV----VSWNTMIIGYAKSGAVEEGLKFYKVLR-RFSISCNEF 186
G A +F+ M + V V++ ++ + G V+ G + + +R ++ I N
Sbjct: 329 HGHGAEALAMFNRMVKAGVRPNDVTFIAILSACSHVGWVDLGKRLFNSMRSKYGIHPNIE 388
Query: 187 SFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDE- 245
+ ++ + + +L+ +V + F +N I S++ A +L R E
Sbjct: 389 HYGCMIDLLGRAGKLREADEV---IKSMPFKANAAIWGSLLAASNVHHDLELGERALSEL 445
Query: 246 --TDARDVLTWTTMVSGYAKLGDMESASKLFNEM 277
+ + + + + Y+ LG + + + N M
Sbjct: 446 IKLEPNNSGNYMLLANLYSNLGRWDESRMMRNMM 479
>sp|Q9LXE8|PP386_ARATH Pentatricopeptide repeat-containing protein At5g15340,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H91 PE=2
SV=1
Length = 623
Score = 291 bits (745), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 164/553 (29%), Positives = 288/553 (52%), Gaps = 47/553 (8%)
Query: 50 LPAETLAFILQQCAESKSLKLGKRVHLHLKLTQ-RKTPTTFLSNHLISMYFKCGSDVDAR 108
L + + +L+ CA L+ GK +H L + +K P ++LSN L Y
Sbjct: 4 LSYQKVRLLLRHCAHRSFLRPGKELHAVLTTSGLKKAPRSYLSNALFQFY---------- 53
Query: 109 KVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDN--MAERDVVSWNTMIIGYAKSGAV 166
A+ G M A+ LFD ++E+D V W T++ +++ G +
Sbjct: 54 ---------------------ASSGEMVTAQKLFDEIPLSEKDNVDWTTLLSSFSRYGLL 92
Query: 167 EEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSI 226
+K + +RR + ++ S + +C KLE+L +Q HG + G L++V + +++
Sbjct: 93 VNSMKLFVEMRRKRVEIDDVSVVCLFGVCAKLEDLGFAQQGHGVAVKMGVLTSVKVCNAL 152
Query: 227 VDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWT 286
+D Y KCG +S+ +R+F+E + + V++WT ++ K +E ++F+EMPE+N V+WT
Sbjct: 153 MDMYGKCGLVSEVKRIFEELEEKSVVSWTVVLDTVVKWEGLERGREVFHEMPERNAVAWT 212
Query: 287 TLIAGYTRNGLGQKALELFTRMMILRIRP--NQHTFSSCLCACASIVSLKHGKQVHGFLI 344
++AGY G ++ LEL M+ R N T S L ACA +L G+ VH + +
Sbjct: 213 VMVAGYLGAGFTREVLELLAE-MVFRCGHGLNFVTLCSMLSACAQSGNLVVGRWVHVYAL 271
Query: 345 RTNF-------RSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQH 397
+ + +V ++L+DMY+KCG ++ VF L K N + WN + S L H
Sbjct: 272 KKEMMMGEEASYDDVMVGTALVDMYAKCGNIDSSMNVFRLM-RKRNVVTWNALFSGLAMH 330
Query: 398 GYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEH 457
G I +F M+R VKPD +T +L+AC+HSG+V EG F S+ G+ P +H
Sbjct: 331 GKGRMVIDMFPQMIR-EVKPDDLTFTAVLSACSHSGIVDEGWRCFHSLRF-YGLEPKVDH 388
Query: 458 HACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQN 517
+AC+++LL +AG ++ + +MP + + +L G C +HG +++ ++ +LI +
Sbjct: 389 YACMVDLLGRAGLIEEAEILMREMPVPPNEVVLGSLLGSCSVHGKVEIAERIKRELIQMS 448
Query: 518 PQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLH 577
P ++ L+S++Y A G+ + + +R + +R +K +S I + + VH FS D H
Sbjct: 449 PGNTEYQILMSNMYVAEGRSDIADGLRGSLRKRGIRKIPGLSSIYVNDSVHRFSSGDRSH 508
Query: 578 PMRDVLYSVLEQL 590
P +Y L ++
Sbjct: 509 PRTKEIYLKLNEV 521
>sp|Q9SJG6|PP200_ARATH Pentatricopeptide repeat-containing protein At2g42920,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-E75 PE=2
SV=1
Length = 559
Score = 291 bits (745), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 147/458 (32%), Positives = 257/458 (56%), Gaps = 3/458 (0%)
Query: 135 MKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFY--KVLRRFSISCNEFSFAGIL 192
M +A +F + ++ WNT+I G+++S E + + + S+ ++ +
Sbjct: 74 MNYAYLVFTRINHKNPFVWNTIIRGFSRSSFPEMAISIFIDMLCSSPSVKPQRLTYPSVF 133
Query: 193 TICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVL 252
+L + + RQ+HG V+ G + I ++++ Y CG L +A R+F DV+
Sbjct: 134 KAYGRLGQARDGRQLHGMVIKEGLEDDSFIRNTMLHMYVTCGCLIEAWRIFLGMIGFDVV 193
Query: 253 TWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILR 312
W +M+ G+AK G ++ A LF+EMP++N VSW ++I+G+ RNG + AL++F M
Sbjct: 194 AWNSMIMGFAKCGLIDQAQNLFDEMPQRNGVSWNSMISGFVRNGRFKDALDMFREMQEKD 253
Query: 313 IRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGR 372
++P+ T S L ACA + + + G+ +H +++R F N+IV+++LIDMY KCGC+ +G
Sbjct: 254 VKPDGFTMVSLLNACAYLGASEQGRWIHEYIVRNRFELNSIVVTALIDMYCKCGCIEEGL 313
Query: 373 QVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHS 432
VF+ K+ S WN+MI L +G++E+A+ LF ++ RS ++PD ++ +L AC HS
Sbjct: 314 NVFECAPKKQLS-CWNSMILGLANNGFEERAMDLFSELERSGLEPDSVSFIGVLTACAHS 372
Query: 433 GLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNA 492
G V +F M I P+ +H+ ++ +L AG ++ ++ MP E D+ +W++
Sbjct: 373 GEVHRADEFFRLMKEKYMIEPSIKHYTLMVNVLGGAGLLEEAEALIKNMPVEEDTVIWSS 432
Query: 493 LHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQF 552
L CR GN++M ++ L +P + + LLS+ Y++ G + R L+ ERQ
Sbjct: 433 LLSACRKIGNVEMAKRAAKCLKKLDPDETCGYVLLSNAYASYGLFEEAVEQRLLMKERQM 492
Query: 553 KKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQL 590
+KE S IE++ +VH F HP +YS+L+ L
Sbjct: 493 EKEVGCSSIEVDFEVHEFISCGGTHPKSAEIYSLLDIL 530
Score = 131 bits (329), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 82/364 (22%), Positives = 173/364 (47%), Gaps = 55/364 (15%)
Query: 88 TFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAE 147
+F+ N ++ MY CG ++A ++F + ++ ++N+M+ G+A G++ A+NLFD M +
Sbjct: 161 SFIRNTMLHMYVTCGCLIEAWRIFLGMIGFDVVAWNSMIMGFAKCGLIDQAQNLFDEMPQ 220
Query: 148 RDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQV 207
R+ VSWN+MI G+ ++G ++ L ++ ++ + + F+ +L C L + R +
Sbjct: 221 RNGVSWNSMISGFVRNGRFKDALDMFREMQEKDVKPDGFTMVSLLNACAYLGASEQGRWI 280
Query: 208 HGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDM 267
H ++ F N ++ ++++D Y KCG + + +F+ + + W +M+ G A
Sbjct: 281 HEYIVRNRFELNSIVVTALIDMYCKCGCIEEGLNVFECAPKKQLSCWNSMILGLAN---- 336
Query: 268 ESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCAC 327
NG ++A++LF+ + + P+ +F L AC
Sbjct: 337 ---------------------------NGFEERAMDLFSELERSGLEPDSVSFIGVLTAC 369
Query: 328 ASIVSLKHGKQVH-----------GFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFD 376
A H +VH ++I + + T+ ++++ G L + +
Sbjct: 370 A------HSGEVHRADEFFRLMKEKYMIEPSIKHYTL----MVNVLGGAGLLEEAEALIK 419
Query: 377 LTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVIL-NACTHSGLV 435
+E++++W++++SA + G E A R + + + PD+ V+L NA GL
Sbjct: 420 NMPVEEDTVIWSSLLSACRKIGNVEMAKRAAKCLKK--LDPDETCGYVLLSNAYASYGLF 477
Query: 436 QEGL 439
+E +
Sbjct: 478 EEAV 481
Score = 116 bits (290), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 82/335 (24%), Positives = 148/335 (44%), Gaps = 67/335 (20%)
Query: 191 ILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARD 250
I T C + ELK Q+H ++ TG +S+ V +S ++ A C
Sbjct: 31 IDTQCSTMRELK---QIHASLIKTGLISDTVTASRVL---AFC----------------- 67
Query: 251 VLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMI 310
A DM A +F + KNP W T+I G++R+ + A+ +F M+
Sbjct: 68 ----------CASPSDMNYAYLVFTRINHKNPFVWNTIIRGFSRSSFPEMAISIFIDMLC 117
Query: 311 --LRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCL 368
++P + T+ S A + + G+Q+HG +I+ ++ + ++++ MY CGCL
Sbjct: 118 SSPSVKPQRLTYPSVFKAYGRLGQARDGRQLHGMVIKEGLEDDSFIRNTMLHMYVTCGCL 177
Query: 369 NDGRQVF----------------------------DLTDN--KENSMLWNTMISALTQHG 398
+ ++F +L D + N + WN+MIS ++G
Sbjct: 178 IEAWRIFLGMIGFDVVAWNSMIMGFAKCGLIDQAQNLFDEMPQRNGVSWNSMISGFVRNG 237
Query: 399 YDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHH 458
+ A+ +F +M VKPD T+ +LNAC + G ++G E + + + N
Sbjct: 238 RFKDALDMFREMQEKDVKPDGFTMVSLLNACAYLGASEQGRWIHEYIVRNRFEL-NSIVV 296
Query: 459 ACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNAL 493
LI++ + GC ++ +N E P + S WN++
Sbjct: 297 TALIDMYCKCGCIEEGLNVFECAPKKQLS-CWNSM 330
>sp|O23337|PP311_ARATH Pentatricopeptide repeat-containing protein At4g14820
OS=Arabidopsis thaliana GN=PCMP-H3 PE=2 SV=1
Length = 722
Score = 291 bits (744), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 145/475 (30%), Positives = 263/475 (55%), Gaps = 1/475 (0%)
Query: 120 FSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRF 179
F + YA+ G + +ARN+FD M+ RDVV+WNTMI Y + G V+E K ++ ++
Sbjct: 147 FVETGFMDMYASCGRINYARNVFDEMSHRDVVTWNTMIERYCRFGLVDEAFKLFEEMKDS 206
Query: 180 SISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDA 239
++ +E I++ C + ++ R ++ ++ + + +++V YA G + A
Sbjct: 207 NVMPDEMILCNIVSACGRTGNMRYNRAIYEFLIENDVRMDTHLLTALVTMYAGAGCMDMA 266
Query: 240 RRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQ 299
R F + R++ T MVSGY+K G ++ A +F++ +K+ V WTT+I+ Y + Q
Sbjct: 267 REFFRKMSVRNLFVSTAMVSGYSKCGRLDDAQVIFDQTEKKDLVCWTTMISAYVESDYPQ 326
Query: 300 KALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLI 359
+AL +F M I+P+ + S + ACA++ L K VH + S + ++LI
Sbjct: 327 EALRVFEEMCCSGIKPDVVSMFSVISACANLGILDKAKWVHSCIHVNGLESELSINNALI 386
Query: 360 DMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDK 419
+MY+KCG L+ R VF+ + N + W++MI+AL+ HG A+ LF M + +V+P++
Sbjct: 387 NMYAKCGGLDATRDVFEKMP-RRNVVSWSSMINALSMHGEASDALSLFARMKQENVEPNE 445
Query: 420 ITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLE 479
+T +L C+HSGLV+EG F SMT + I P EH+ C+++L +A + + +E
Sbjct: 446 VTFVGVLYGCSHSGLVEEGKKIFASMTDEYNITPKLEHYGCMVDLFGRANLLREALEVIE 505
Query: 480 KMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRL 539
MP + +W +L CRIHG +++G+ ++++ P L+S+IY+ +
Sbjct: 506 SMPVASNVVIWGSLMSACRIHGELELGKFAAKRILELEPDHDGALVLMSNIYAREQRWED 565
Query: 540 VEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQM 594
V +R+++ E+ KE+ +S I+ K H F + D H + +Y+ L+++ ++
Sbjct: 566 VRNIRRVMEEKNVFKEKGLSRIDQNGKSHEFLIGDKRHKQSNEIYAKLDEVVSKL 620
Score = 155 bits (391), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 97/370 (26%), Positives = 187/370 (50%), Gaps = 12/370 (3%)
Query: 137 HARNLFDNM-AERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTIC 195
+A N+F ++ + + + +N + ++S + FY+ +R ++FSF IL
Sbjct: 62 YALNVFSSIPSPPESIVFNPFLRDLSRSSEPRATILFYQRIRHVGGRLDQFSFLPILKAV 121
Query: 196 VKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWT 255
K+ L ++HG L + + + +D YA CG ++ AR +FDE RDV+TW
Sbjct: 122 SKVSALFEGMELHGVAFKIATLCDPFVETGFMDMYASCGRINYARNVFDEMSHRDVVTWN 181
Query: 256 TMVSGYAKLGDMESASKLFNEMPEKNPVS----WTTLIAGYTRNGLGQKALELFTRMMIL 311
TM+ Y + G ++ A KLF EM + N + +++ R G + ++ ++
Sbjct: 182 TMIERYCRFGLVDEAFKLFEEMKDSNVMPDEMILCNIVSACGRTGNMRYNRAIYEFLIEN 241
Query: 312 RIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDG 371
+R + H ++ + A + ++ F + + R N V ++++ YSKCG L+D
Sbjct: 242 DVRMDTHLLTALVTMYAGAGCMDMARE---FFRKMSVR-NLFVSTAMVSGYSKCGRLDDA 297
Query: 372 RQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTH 431
+ +FD T+ K++ + W TMISA + Y ++A+R+F +M S +KPD +++ +++AC +
Sbjct: 298 QVIFDQTE-KKDLVCWTTMISAYVESDYPQEALRVFEEMCCSGIKPDVVSMFSVISACAN 356
Query: 432 SGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWN 491
G++ + + S H G+ + LI + A+ G D + EKMP + W+
Sbjct: 357 LGILDKA-KWVHSCIHVNGLESELSINNALINMYAKCGGLDATRDVFEKMP-RRNVVSWS 414
Query: 492 ALHGVCRIHG 501
++ +HG
Sbjct: 415 SMINALSMHG 424
Score = 134 bits (336), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 88/382 (23%), Positives = 172/382 (45%), Gaps = 36/382 (9%)
Query: 18 NCLIQSFLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLH 77
N +I+ + G + EA + + + L I+ C + +++ + ++
Sbjct: 181 NTMIERYCRF---GLVDEAFKLFEEMKDSNVMPDEMILCNIVSACGRTGNMRYNRAIYEF 237
Query: 78 LKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKH 137
L + T L+ L++MY G AR+ F K+ V+NLF M+SGY+ G +
Sbjct: 238 LIENDVRMDTHLLTA-LVTMYAGAGCMDMAREFFRKMSVRNLFVSTAMVSGYSKCGRLDD 296
Query: 138 ARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVK 197
A+ +FD ++D+V W TMI Y +S +E L+ ++ + I + S +++ C
Sbjct: 297 AQVIFDQTEKKDLVCWTTMISAYVESDYPQEALRVFEEMCCSGIKPDVVSMFSVISACAN 356
Query: 198 LEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTM 257
L L + VH + V G S + I++++++ YAKCG L R +F++ R+V++W++M
Sbjct: 357 LGILDKAKWVHSCIHVNGLESELSINNALINMYAKCGGLDATRDVFEKMPRRNVVSWSSM 416
Query: 258 VSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQ 317
++ + G+ A LF M ++N + PN+
Sbjct: 417 INALSMHGEASDALSLFARMKQEN-------------------------------VEPNE 445
Query: 318 HTFSSCLCACASIVSLKHGKQVHGFLI-RTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFD 376
TF L C+ ++ GK++ + N ++D++ + L + +V +
Sbjct: 446 VTFVGVLYGCSHSGLVEEGKKIFASMTDEYNITPKLEHYGCMVDLFGRANLLREALEVIE 505
Query: 377 LTDNKENSMLWNTMISALTQHG 398
N ++W +++SA HG
Sbjct: 506 SMPVASNVVIWGSLMSACRIHG 527
Score = 33.9 bits (76), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 42/208 (20%), Positives = 85/208 (40%), Gaps = 10/208 (4%)
Query: 332 SLKHGKQVHGFLIRT--NFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNT 389
SL H KQ+H ++RT N + N+ + + + S VF + S+++N
Sbjct: 24 SLNHIKQLHAHILRTVINHKLNSFLFNLSVSSSSINLSY--ALNVFSSIPSPPESIVFNP 81
Query: 390 MISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDL 449
+ L++ I + + + D+ + IL A + + EG+ + +
Sbjct: 82 FLRDLSRSSEPRATILFYQRIRHVGGRLDQFSFLPILKAVSKVSALFEGME-LHGVAFKI 140
Query: 450 GIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNAL-HGVCRIHGNIDMGRK 508
+ + +++ A G + N ++M + D WN + CR G +D K
Sbjct: 141 ATLCDPFVETGFMDMYASCGRINYARNVFDEMSH-RDVVTWNTMIERYCRF-GLVDEAFK 198
Query: 509 VVDQLIDQNPQSSATHGLLSSIYSALGK 536
+ +++ D N +L +I SA G+
Sbjct: 199 LFEEMKDSNVMPDEM--ILCNIVSACGR 224
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.134 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 212,458,845
Number of Sequences: 539616
Number of extensions: 8408750
Number of successful extensions: 29901
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 366
Number of HSP's successfully gapped in prelim test: 81
Number of HSP's that attempted gapping in prelim test: 21041
Number of HSP's gapped (non-prelim): 2392
length of query: 605
length of database: 191,569,459
effective HSP length: 123
effective length of query: 482
effective length of database: 125,196,691
effective search space: 60344805062
effective search space used: 60344805062
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 64 (29.3 bits)