Query 007400
Match_columns 605
No_of_seqs 612 out of 3672
Neff 11.4
Searched_HMMs 46136
Date Thu Mar 28 23:04:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007400.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007400hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03077 Protein ECB2; Provisi 100.0 1.6E-83 3.6E-88 691.9 65.1 588 10-604 148-774 (857)
2 PLN03081 pentatricopeptide (PP 100.0 2.6E-76 5.5E-81 621.1 63.2 524 49-604 84-611 (697)
3 PLN03077 Protein ECB2; Provisi 100.0 5.9E-68 1.3E-72 571.3 57.3 520 26-556 60-625 (857)
4 PLN03218 maturation of RBCL 1; 100.0 1.9E-63 4.1E-68 524.9 60.5 506 48-557 366-916 (1060)
5 PLN03218 maturation of RBCL 1; 100.0 9.6E-62 2.1E-66 512.0 55.0 494 18-519 371-914 (1060)
6 PLN03081 pentatricopeptide (PP 100.0 1.4E-56 3E-61 471.6 47.9 442 26-482 96-555 (697)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 3.4E-33 7.4E-38 309.3 59.2 515 26-552 338-868 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 1.2E-32 2.7E-37 304.9 59.8 513 26-550 304-832 (899)
9 PRK11447 cellulose synthase su 100.0 2.2E-25 4.8E-30 246.8 55.4 529 14-549 25-699 (1157)
10 PRK11447 cellulose synthase su 100.0 6.6E-25 1.4E-29 243.0 58.9 508 26-548 121-738 (1157)
11 PRK09782 bacteriophage N4 rece 100.0 1.4E-22 3.1E-27 214.1 56.9 503 26-551 53-707 (987)
12 KOG4626 O-linked N-acetylgluco 99.9 4.1E-24 8.8E-29 200.4 35.3 436 92-539 52-508 (966)
13 PRK09782 bacteriophage N4 rece 99.9 1.7E-20 3.6E-25 198.6 54.7 317 226-552 382-742 (987)
14 KOG4626 O-linked N-acetylgluco 99.9 1.6E-22 3.4E-27 189.9 34.2 421 122-552 51-487 (966)
15 TIGR00990 3a0801s09 mitochondr 99.9 4.5E-20 9.9E-25 192.2 42.8 419 121-550 129-571 (615)
16 KOG2002 TPR-containing nuclear 99.9 7.8E-20 1.7E-24 181.0 41.1 514 29-551 176-746 (1018)
17 KOG2002 TPR-containing nuclear 99.9 4E-19 8.8E-24 176.0 41.0 514 33-552 146-711 (1018)
18 PRK11788 tetratricopeptide rep 99.9 2E-19 4.4E-24 178.2 30.7 287 264-557 48-354 (389)
19 PRK15174 Vi polysaccharide exp 99.9 2.2E-18 4.7E-23 178.9 38.0 356 129-521 15-386 (656)
20 PRK10049 pgaA outer membrane p 99.9 6.6E-18 1.4E-22 179.2 42.5 394 124-550 20-456 (765)
21 TIGR00990 3a0801s09 mitochondr 99.9 1.1E-17 2.3E-22 174.5 42.8 414 91-519 130-574 (615)
22 PRK11788 tetratricopeptide rep 99.9 4.8E-19 1E-23 175.5 28.9 293 159-456 44-354 (389)
23 PRK15174 Vi polysaccharide exp 99.9 1.3E-17 2.8E-22 173.2 40.3 343 98-481 15-378 (656)
24 PRK10049 pgaA outer membrane p 99.9 4.5E-17 9.8E-22 172.9 44.0 410 91-525 18-465 (765)
25 PRK14574 hmsH outer membrane p 99.8 1.7E-16 3.6E-21 165.0 43.9 425 90-521 37-518 (822)
26 PRK14574 hmsH outer membrane p 99.8 2.1E-16 4.6E-21 164.3 44.5 409 63-481 45-510 (822)
27 KOG2003 TPR repeat-containing 99.8 2E-17 4.3E-22 150.3 27.6 473 52-538 201-711 (840)
28 KOG4422 Uncharacterized conser 99.8 8.3E-16 1.8E-20 138.9 36.2 425 24-481 122-587 (625)
29 KOG4422 Uncharacterized conser 99.8 4.9E-15 1.1E-19 134.0 38.4 425 53-553 117-593 (625)
30 KOG0495 HAT repeat protein [RN 99.8 3E-13 6.5E-18 129.0 46.3 451 100-564 388-892 (913)
31 KOG1915 Cell cycle control pro 99.7 3.7E-13 8E-18 123.6 41.2 491 50-548 71-623 (677)
32 KOG0495 HAT repeat protein [RN 99.7 3.1E-12 6.8E-17 122.2 47.6 386 157-550 413-846 (913)
33 KOG2076 RNA polymerase III tra 99.7 2.3E-12 5E-17 128.0 46.5 520 29-551 151-850 (895)
34 PF13429 TPR_15: Tetratricopep 99.7 3E-17 6.5E-22 153.7 9.6 258 287-549 13-276 (280)
35 KOG0547 Translocase of outer m 99.7 7.6E-14 1.6E-18 128.7 29.0 215 328-548 337-564 (606)
36 KOG1915 Cell cycle control pro 99.7 1.4E-11 2.9E-16 113.5 41.4 449 90-549 75-584 (677)
37 KOG2076 RNA polymerase III tra 99.7 2E-13 4.3E-18 135.4 31.5 312 234-548 153-510 (895)
38 KOG1173 Anaphase-promoting com 99.7 2.4E-12 5.2E-17 121.3 36.9 262 281-549 243-517 (611)
39 KOG4318 Bicoid mRNA stability 99.7 2.5E-13 5.3E-18 134.0 30.8 398 148-552 202-810 (1088)
40 KOG2003 TPR repeat-containing 99.7 2.1E-13 4.6E-18 124.4 26.8 449 94-550 207-689 (840)
41 KOG1126 DNA-binding cell divis 99.6 4.7E-14 1E-18 135.4 23.6 276 265-550 333-620 (638)
42 PRK10747 putative protoheme IX 99.6 2.7E-13 5.7E-18 132.9 29.8 276 264-549 97-389 (398)
43 KOG1155 Anaphase-promoting com 99.6 1.9E-12 4.2E-17 118.8 31.7 328 215-549 159-494 (559)
44 KOG3785 Uncharacterized conser 99.6 9.2E-11 2E-15 104.2 36.7 480 24-556 29-520 (557)
45 KOG1126 DNA-binding cell divis 99.6 3.3E-13 7.2E-18 129.7 23.0 247 296-550 333-586 (638)
46 KOG2047 mRNA splicing factor [ 99.6 5.2E-10 1.1E-14 107.2 43.9 385 151-543 249-716 (835)
47 KOG1155 Anaphase-promoting com 99.6 3E-11 6.5E-16 111.1 32.8 194 284-480 332-532 (559)
48 TIGR00540 hemY_coli hemY prote 99.6 4.3E-12 9.3E-17 125.2 29.8 278 264-548 97-397 (409)
49 PRK10747 putative protoheme IX 99.6 5.7E-12 1.2E-16 123.6 29.9 218 264-516 166-390 (398)
50 KOG1173 Anaphase-promoting com 99.6 1.6E-10 3.4E-15 109.3 36.9 280 250-533 243-535 (611)
51 TIGR00540 hemY_coli hemY prote 99.6 1.7E-11 3.8E-16 120.9 32.7 253 261-516 128-399 (409)
52 KOG0547 Translocase of outer m 99.5 8.1E-11 1.8E-15 109.1 33.1 387 122-518 118-568 (606)
53 PF13429 TPR_15: Tetratricopep 99.5 1.3E-13 2.9E-18 129.1 12.5 217 226-446 50-275 (280)
54 COG3071 HemY Uncharacterized e 99.5 4.3E-11 9.3E-16 108.5 27.8 277 265-549 98-389 (400)
55 KOG2047 mRNA splicing factor [ 99.5 3.4E-09 7.3E-14 101.8 41.2 156 397-554 524-691 (835)
56 KOG1174 Anaphase-promoting com 99.5 8.1E-09 1.7E-13 94.0 37.5 273 250-528 231-512 (564)
57 TIGR02521 type_IV_pilW type IV 99.4 3.6E-11 7.8E-16 110.0 22.8 198 351-549 30-231 (234)
58 COG3071 HemY Uncharacterized e 99.4 1.2E-09 2.5E-14 99.3 31.0 203 280-516 185-390 (400)
59 COG2956 Predicted N-acetylgluc 99.4 1.4E-10 3E-15 102.0 23.8 263 287-557 74-354 (389)
60 KOG2376 Signal recognition par 99.4 6E-09 1.3E-13 99.3 36.1 252 286-547 228-517 (652)
61 COG2956 Predicted N-acetylgluc 99.4 5.3E-10 1.1E-14 98.4 25.8 286 162-515 47-346 (389)
62 KOG4162 Predicted calmodulin-b 99.4 1.7E-08 3.7E-13 99.4 38.3 490 31-550 241-783 (799)
63 KOG1129 TPR repeat-containing 99.4 2E-11 4.4E-16 107.1 15.3 226 286-550 227-458 (478)
64 COG3063 PilF Tfp pilus assembl 99.4 5.4E-11 1.2E-15 99.7 17.1 162 386-552 37-204 (250)
65 KOG1840 Kinesin light chain [C 99.4 5E-10 1.1E-14 109.3 25.5 192 357-548 246-477 (508)
66 KOG1156 N-terminal acetyltrans 99.3 9.4E-08 2E-12 92.4 39.5 213 64-280 19-248 (700)
67 KOG1156 N-terminal acetyltrans 99.3 3.4E-08 7.3E-13 95.4 35.7 466 18-514 8-509 (700)
68 PRK12370 invasion protein regu 99.3 5.6E-10 1.2E-14 114.6 26.0 246 296-551 275-536 (553)
69 KOG1129 TPR repeat-containing 99.3 7.2E-11 1.6E-15 103.7 15.6 196 353-552 224-426 (478)
70 KOG4162 Predicted calmodulin-b 99.3 2E-08 4.2E-13 99.0 33.2 420 85-521 321-788 (799)
71 KOG3785 Uncharacterized conser 99.3 1.1E-08 2.4E-13 91.3 28.4 411 26-458 66-497 (557)
72 PRK12370 invasion protein regu 99.3 4.2E-10 9.1E-15 115.5 22.6 212 331-550 275-502 (553)
73 KOG4318 Bicoid mRNA stability 99.3 9.9E-10 2.1E-14 109.2 23.9 91 171-269 11-101 (1088)
74 TIGR02521 type_IV_pilW type IV 99.3 1.8E-09 4E-14 98.6 22.9 198 282-516 31-232 (234)
75 KOG2376 Signal recognition par 99.3 3.5E-07 7.7E-12 87.6 37.9 448 18-482 13-518 (652)
76 KOG1174 Anaphase-promoting com 99.3 1.7E-07 3.6E-12 85.7 34.0 264 280-551 230-501 (564)
77 PRK11189 lipoprotein NlpI; Pro 99.3 6.6E-10 1.4E-14 104.2 19.3 188 355-549 67-264 (296)
78 PF13041 PPR_2: PPR repeat fam 99.2 2E-11 4.4E-16 79.6 5.8 50 148-197 1-50 (50)
79 KOG0985 Vesicle coat protein c 99.2 4.5E-06 9.8E-11 84.9 45.1 502 23-553 487-1165(1666)
80 PRK11189 lipoprotein NlpI; Pro 99.2 5.3E-09 1.1E-13 98.2 23.5 228 296-531 40-281 (296)
81 KOG3616 Selective LIM binding 99.2 3.2E-07 6.9E-12 89.9 35.6 373 129-546 716-1130(1636)
82 KOG3616 Selective LIM binding 99.2 5.8E-07 1.3E-11 88.1 36.4 201 26-247 453-675 (1636)
83 KOG0624 dsRNA-activated protei 99.2 6.3E-08 1.4E-12 86.2 27.4 297 220-524 38-378 (504)
84 PF12569 NARP1: NMDA receptor- 99.2 3.8E-07 8.2E-12 90.6 36.2 282 25-310 12-333 (517)
85 PF13041 PPR_2: PPR repeat fam 99.2 7.3E-11 1.6E-15 76.9 6.7 50 382-431 1-50 (50)
86 KOG0548 Molecular co-chaperone 99.2 3.6E-07 7.7E-12 86.7 32.6 235 285-534 227-473 (539)
87 KOG4340 Uncharacterized conser 99.2 1.7E-07 3.6E-12 81.9 27.7 407 122-551 13-444 (459)
88 COG3063 PilF Tfp pilus assembl 99.2 2.4E-08 5.2E-13 84.1 21.8 191 325-519 43-239 (250)
89 KOG1127 TPR repeat-containing 99.1 4.3E-07 9.4E-12 92.1 33.3 177 31-213 472-658 (1238)
90 PF12569 NARP1: NMDA receptor- 99.1 5.2E-08 1.1E-12 96.7 26.7 245 227-481 11-288 (517)
91 KOG1840 Kinesin light chain [C 99.1 1.1E-07 2.4E-12 93.1 27.6 239 153-446 202-477 (508)
92 KOG4340 Uncharacterized conser 99.1 2.8E-07 6.1E-12 80.5 26.8 307 22-342 15-335 (459)
93 KOG0548 Molecular co-chaperone 99.1 3.7E-07 8.1E-12 86.6 27.3 436 26-512 11-485 (539)
94 KOG0985 Vesicle coat protein c 99.1 1.3E-05 2.7E-10 81.9 39.2 358 148-550 982-1370(1666)
95 KOG1125 TPR repeat-containing 99.0 9.9E-09 2.1E-13 97.8 15.8 216 328-549 296-526 (579)
96 PRK04841 transcriptional regul 99.0 3.5E-05 7.5E-10 85.7 46.4 323 229-551 383-761 (903)
97 PF04733 Coatomer_E: Coatomer 99.0 1.4E-08 3.1E-13 93.6 15.4 147 393-549 111-264 (290)
98 KOG3617 WD40 and TPR repeat-co 99.0 5.2E-05 1.1E-09 75.9 41.4 158 64-246 812-993 (1416)
99 KOG0624 dsRNA-activated protei 99.0 1.9E-06 4.1E-11 77.1 26.3 307 152-482 40-368 (504)
100 KOG3617 WD40 and TPR repeat-co 99.0 2.4E-05 5.1E-10 78.2 36.3 183 160-377 810-992 (1416)
101 cd05804 StaR_like StaR_like; a 98.9 2.7E-06 5.9E-11 83.2 29.6 260 289-551 50-337 (355)
102 TIGR03302 OM_YfiO outer membra 98.9 2.7E-07 5.8E-12 84.2 19.4 181 350-550 31-232 (235)
103 PF04733 Coatomer_E: Coatomer 98.9 1.1E-07 2.4E-12 87.8 16.8 226 284-521 37-270 (290)
104 PRK15359 type III secretion sy 98.9 7.7E-08 1.7E-12 79.2 13.3 121 405-532 14-137 (144)
105 PRK10370 formate-dependent nit 98.8 4.1E-07 8.8E-12 79.3 17.3 145 392-551 24-174 (198)
106 cd05804 StaR_like StaR_like; a 98.8 6.4E-06 1.4E-10 80.5 27.8 194 322-516 119-336 (355)
107 PRK04841 transcriptional regul 98.8 3.7E-05 8.1E-10 85.4 37.0 253 229-481 461-757 (903)
108 KOG1127 TPR repeat-containing 98.8 1.1E-05 2.5E-10 82.2 29.0 176 68-247 474-657 (1238)
109 PRK15359 type III secretion sy 98.8 1.1E-07 2.4E-12 78.3 12.5 107 440-551 14-122 (144)
110 KOG1125 TPR repeat-containing 98.8 6.4E-07 1.4E-11 85.8 18.4 246 291-543 294-564 (579)
111 KOG1070 rRNA processing protei 98.8 1.1E-06 2.4E-11 92.4 21.0 201 349-553 1455-1666(1710)
112 PRK15363 pathogenicity island 98.7 5.4E-07 1.2E-11 72.6 13.5 96 455-550 35-132 (157)
113 PRK15179 Vi polysaccharide bio 98.7 1.3E-06 2.7E-11 90.4 19.7 136 383-523 85-224 (694)
114 KOG1914 mRNA cleavage and poly 98.7 0.00039 8.6E-09 66.7 34.6 174 297-471 346-526 (656)
115 KOG1128 Uncharacterized conser 98.7 1.3E-06 2.9E-11 85.9 17.4 221 314-553 395-619 (777)
116 PLN02789 farnesyltranstransfer 98.7 9.8E-06 2.1E-10 76.0 22.5 210 332-547 52-299 (320)
117 COG5010 TadD Flp pilus assembl 98.7 3.5E-06 7.7E-11 73.0 17.8 155 388-545 70-226 (257)
118 PRK10370 formate-dependent nit 98.7 3.7E-06 8E-11 73.3 18.2 154 359-525 23-182 (198)
119 COG5010 TadD Flp pilus assembl 98.6 4.3E-06 9.3E-11 72.5 17.5 135 415-551 62-198 (257)
120 KOG2053 Mitochondrial inherita 98.6 0.0011 2.3E-08 67.8 39.7 511 22-548 14-606 (932)
121 KOG1128 Uncharacterized conser 98.6 2.7E-06 5.9E-11 83.8 16.7 190 347-552 393-584 (777)
122 TIGR02552 LcrH_SycD type III s 98.6 1E-06 2.2E-11 72.4 12.0 101 450-550 11-114 (135)
123 TIGR03302 OM_YfiO outer membra 98.5 4.7E-06 1E-10 76.0 16.7 183 314-518 30-234 (235)
124 KOG3060 Uncharacterized conser 98.5 2.7E-05 5.8E-10 67.0 19.6 175 354-531 54-235 (289)
125 PRK15179 Vi polysaccharide bio 98.5 2.1E-05 4.7E-10 81.5 22.3 143 347-494 81-229 (694)
126 KOG1070 rRNA processing protei 98.5 3.1E-05 6.7E-10 81.9 22.5 216 219-435 1457-1687(1710)
127 PLN02789 farnesyltranstransfer 98.5 2.7E-05 5.9E-10 73.1 20.1 187 360-551 45-251 (320)
128 PRK14720 transcript cleavage f 98.5 3.4E-05 7.4E-10 80.8 21.9 128 386-532 118-268 (906)
129 PF12854 PPR_1: PPR repeat 98.4 4.1E-07 9E-12 52.9 4.1 32 215-246 2-33 (34)
130 TIGR02552 LcrH_SycD type III s 98.4 1E-05 2.2E-10 66.4 13.3 114 406-524 5-122 (135)
131 PF09295 ChAPs: ChAPs (Chs5p-A 98.4 8E-06 1.7E-10 78.1 14.0 123 421-548 171-295 (395)
132 KOG3081 Vesicle coat complex C 98.4 0.00011 2.4E-09 63.9 19.3 148 391-548 115-269 (299)
133 KOG3081 Vesicle coat complex C 98.4 0.00023 5E-09 62.0 20.7 155 359-521 115-276 (299)
134 COG4783 Putative Zn-dependent 98.3 9.8E-05 2.1E-09 70.0 20.0 145 385-551 307-455 (484)
135 PF12854 PPR_1: PPR repeat 98.3 8.7E-07 1.9E-11 51.6 4.2 32 347-378 2-33 (34)
136 PRK14720 transcript cleavage f 98.3 5E-05 1.1E-09 79.6 19.6 201 320-553 34-255 (906)
137 COG4783 Putative Zn-dependent 98.3 0.0001 2.2E-09 69.9 19.6 123 424-549 311-436 (484)
138 KOG3060 Uncharacterized conser 98.2 0.00019 4.2E-09 61.9 17.1 162 386-552 54-222 (289)
139 PF09295 ChAPs: ChAPs (Chs5p-A 98.2 5.7E-05 1.2E-09 72.4 15.5 124 353-482 170-295 (395)
140 PF09976 TPR_21: Tetratricopep 98.2 6.1E-05 1.3E-09 62.4 13.8 85 461-546 54-143 (145)
141 PF13414 TPR_11: TPR repeat; P 98.2 4.2E-06 9.1E-11 59.1 5.9 65 486-550 2-67 (69)
142 PF09976 TPR_21: Tetratricopep 98.2 0.00011 2.5E-09 60.7 15.1 124 387-514 15-145 (145)
143 PF13432 TPR_16: Tetratricopep 98.1 6.7E-06 1.4E-10 57.2 5.6 58 493-550 3-60 (65)
144 TIGR02795 tol_pal_ybgF tol-pal 98.1 5.4E-05 1.2E-09 60.4 11.8 94 457-550 4-105 (119)
145 PLN03088 SGT1, suppressor of 98.1 6.3E-05 1.4E-09 72.5 14.0 102 426-530 9-113 (356)
146 cd00189 TPR Tetratricopeptide 98.1 4.1E-05 8.8E-10 58.2 10.5 93 458-550 3-97 (100)
147 KOG0550 Molecular chaperone (D 98.1 0.00029 6.3E-09 65.3 16.9 161 385-550 169-350 (486)
148 PF12895 Apc3: Anaphase-promot 98.1 3.6E-06 7.8E-11 62.1 4.1 78 468-546 2-83 (84)
149 COG3898 Uncharacterized membra 98.1 0.0085 1.8E-07 55.5 27.1 247 291-550 129-392 (531)
150 KOG0553 TPR repeat-containing 98.1 2.5E-05 5.4E-10 69.3 9.8 107 429-538 91-200 (304)
151 TIGR00756 PPR pentatricopeptid 98.1 7.4E-06 1.6E-10 48.6 4.4 35 151-185 1-35 (35)
152 KOG0553 TPR repeat-containing 98.0 5.6E-05 1.2E-09 67.1 10.7 88 463-550 89-178 (304)
153 COG4235 Cytochrome c biogenesi 98.0 0.00022 4.8E-09 63.9 14.4 127 453-601 154-285 (287)
154 PRK15331 chaperone protein Sic 98.0 8.4E-05 1.8E-09 60.4 10.6 100 450-549 31-133 (165)
155 PF13812 PPR_3: Pentatricopept 98.0 9.6E-06 2.1E-10 47.7 4.1 33 151-183 2-34 (34)
156 PF14559 TPR_19: Tetratricopep 98.0 1.7E-05 3.7E-10 55.8 6.0 53 498-550 2-54 (68)
157 TIGR02795 tol_pal_ybgF tol-pal 98.0 0.00012 2.5E-09 58.5 11.6 105 421-525 4-114 (119)
158 TIGR00756 PPR pentatricopeptid 98.0 1.6E-05 3.5E-10 47.1 4.8 35 385-419 1-35 (35)
159 COG4700 Uncharacterized protei 98.0 0.0013 2.9E-08 54.0 16.6 151 395-549 67-221 (251)
160 PLN03088 SGT1, suppressor of 98.0 0.00013 2.8E-09 70.3 13.2 97 389-490 7-106 (356)
161 PF13812 PPR_3: Pentatricopept 97.9 1.9E-05 4.1E-10 46.4 4.3 33 283-315 2-34 (34)
162 PRK02603 photosystem I assembl 97.9 0.0002 4.3E-09 61.3 11.2 81 456-536 36-121 (172)
163 PRK02603 photosystem I assembl 97.9 0.00069 1.5E-08 58.0 14.4 129 384-536 35-166 (172)
164 PRK10153 DNA-binding transcrip 97.9 0.00093 2E-08 67.4 17.4 62 487-549 420-481 (517)
165 PF13371 TPR_9: Tetratricopept 97.9 6E-05 1.3E-09 53.9 6.6 58 494-551 2-59 (73)
166 KOG1130 Predicted G-alpha GTPa 97.8 0.00017 3.6E-09 66.6 10.6 129 420-548 196-342 (639)
167 CHL00033 ycf3 photosystem I as 97.8 0.0002 4.3E-09 61.1 10.7 93 455-547 35-139 (168)
168 PF13432 TPR_16: Tetratricopep 97.8 5.6E-05 1.2E-09 52.5 6.0 61 461-521 3-65 (65)
169 PRK10866 outer membrane biogen 97.8 0.0031 6.7E-08 57.0 18.2 57 492-548 180-239 (243)
170 PF12895 Apc3: Anaphase-promot 97.8 8.9E-05 1.9E-09 54.6 6.9 79 397-479 2-82 (84)
171 PRK10153 DNA-binding transcrip 97.8 0.00089 1.9E-08 67.5 15.9 139 382-522 335-488 (517)
172 PRK10866 outer membrane biogen 97.8 0.0061 1.3E-07 55.1 19.8 82 16-99 31-115 (243)
173 KOG1914 mRNA cleavage and poly 97.8 0.044 9.5E-07 53.3 37.0 206 334-542 310-531 (656)
174 PF08579 RPM2: Mitochondrial r 97.7 0.0005 1.1E-08 51.5 9.6 79 154-232 29-116 (120)
175 cd00189 TPR Tetratricopeptide 97.7 0.00045 9.7E-09 52.2 10.1 91 425-518 6-99 (100)
176 KOG2041 WD40 repeat protein [G 97.7 0.046 1E-06 54.7 25.1 159 101-283 747-910 (1189)
177 PF14938 SNAP: Soluble NSF att 97.7 0.019 4.1E-07 53.7 22.2 98 284-381 157-266 (282)
178 PF05843 Suf: Suppressor of fo 97.6 0.0021 4.5E-08 59.8 14.9 132 385-519 2-139 (280)
179 PF01535 PPR: PPR repeat; Int 97.6 7.7E-05 1.7E-09 42.6 3.5 30 152-181 2-31 (31)
180 PRK15363 pathogenicity island 97.6 0.0011 2.4E-08 53.8 11.1 86 428-516 44-132 (157)
181 PF14559 TPR_19: Tetratricopep 97.6 8.3E-05 1.8E-09 52.2 4.0 61 467-527 3-65 (68)
182 PF13414 TPR_11: TPR repeat; P 97.6 0.00023 5E-09 50.1 6.0 64 455-518 3-69 (69)
183 PF14938 SNAP: Soluble NSF att 97.6 0.074 1.6E-06 49.7 28.1 107 386-493 157-274 (282)
184 PF13428 TPR_14: Tetratricopep 97.5 0.00014 3.1E-09 45.5 4.1 42 488-529 2-43 (44)
185 PF07079 DUF1347: Protein of u 97.5 0.086 1.9E-06 50.2 34.9 426 26-492 15-530 (549)
186 PF13431 TPR_17: Tetratricopep 97.5 5.9E-05 1.3E-09 43.8 2.1 34 509-542 1-34 (34)
187 PF12688 TPR_5: Tetratrico pep 97.5 0.0011 2.4E-08 51.9 9.6 89 460-548 6-102 (120)
188 PF08579 RPM2: Mitochondrial r 97.5 0.0016 3.6E-08 48.8 9.9 81 284-364 27-116 (120)
189 PF13281 DUF4071: Domain of un 97.5 0.016 3.6E-07 54.9 18.9 166 354-522 143-340 (374)
190 KOG1538 Uncharacterized conser 97.5 0.037 8.1E-07 54.8 21.5 52 421-482 749-800 (1081)
191 PF01535 PPR: PPR repeat; Int 97.5 0.00016 3.4E-09 41.3 3.6 31 385-415 1-31 (31)
192 KOG0550 Molecular chaperone (D 97.5 0.024 5.2E-07 53.1 19.2 86 429-518 259-352 (486)
193 PF07079 DUF1347: Protein of u 97.5 0.1 2.2E-06 49.7 32.2 190 353-548 299-522 (549)
194 PLN03098 LPA1 LOW PSII ACCUMUL 97.4 0.00062 1.3E-08 65.0 8.8 67 484-550 72-141 (453)
195 PRK10803 tol-pal system protei 97.4 0.0012 2.6E-08 60.1 10.2 93 458-550 146-246 (263)
196 COG4700 Uncharacterized protei 97.4 0.028 6.1E-07 46.5 16.6 123 314-438 86-212 (251)
197 PF13424 TPR_12: Tetratricopep 97.4 0.00027 5.8E-09 51.2 4.5 61 488-548 6-73 (78)
198 CHL00033 ycf3 photosystem I as 97.4 0.0042 9E-08 53.0 12.6 61 386-446 37-99 (168)
199 PF05843 Suf: Suppressor of fo 97.4 0.0054 1.2E-07 57.0 14.2 141 283-427 2-148 (280)
200 PF10037 MRP-S27: Mitochondria 97.4 0.003 6.5E-08 61.1 12.4 122 311-432 60-186 (429)
201 PF04840 Vps16_C: Vps16, C-ter 97.3 0.15 3.2E-06 48.1 26.7 122 354-496 179-300 (319)
202 KOG2053 Mitochondrial inherita 97.3 0.28 6.1E-06 51.0 43.1 449 64-543 21-563 (932)
203 PF12688 TPR_5: Tetratrico pep 97.3 0.0048 1E-07 48.3 10.9 110 21-130 5-117 (120)
204 PRK10803 tol-pal system protei 97.3 0.0038 8.3E-08 56.9 12.0 102 421-522 145-252 (263)
205 PF06239 ECSIT: Evolutionarily 97.3 0.0018 3.9E-08 55.2 9.0 97 139-235 34-153 (228)
206 PF10037 MRP-S27: Mitochondria 97.3 0.0039 8.4E-08 60.4 12.2 116 118-233 65-186 (429)
207 PF13371 TPR_9: Tetratricopept 97.3 0.0011 2.4E-08 47.2 6.4 65 462-526 2-68 (73)
208 PF04840 Vps16_C: Vps16, C-ter 97.2 0.2 4.4E-06 47.2 31.6 109 386-512 179-287 (319)
209 KOG2280 Vacuolar assembly/sort 97.2 0.36 7.8E-06 49.2 33.6 335 178-545 425-794 (829)
210 KOG0543 FKBP-type peptidyl-pro 97.2 0.0034 7.5E-08 58.7 10.0 124 424-547 213-352 (397)
211 PF13525 YfiO: Outer membrane 97.2 0.02 4.3E-07 50.4 14.7 50 493-542 147-199 (203)
212 COG4235 Cytochrome c biogenesi 97.2 0.017 3.6E-07 52.2 14.0 104 416-522 152-262 (287)
213 COG3898 Uncharacterized membra 97.1 0.23 5E-06 46.5 26.8 78 233-310 133-216 (531)
214 PF06239 ECSIT: Evolutionarily 97.1 0.0067 1.4E-07 51.8 10.5 96 272-367 35-153 (228)
215 KOG0543 FKBP-type peptidyl-pro 97.1 0.0065 1.4E-07 56.9 11.1 126 390-518 214-357 (397)
216 KOG2041 WD40 repeat protein [G 97.0 0.44 9.6E-06 48.1 27.7 213 135-379 679-905 (1189)
217 KOG2796 Uncharacterized conser 97.0 0.045 9.8E-07 48.0 14.8 138 283-422 178-322 (366)
218 PF13525 YfiO: Outer membrane 97.0 0.032 6.8E-07 49.2 14.4 83 16-99 4-88 (203)
219 KOG2796 Uncharacterized conser 96.9 0.053 1.2E-06 47.6 14.1 59 388-446 181-239 (366)
220 PF13424 TPR_12: Tetratricopep 96.8 0.0016 3.4E-08 47.1 4.1 61 456-516 6-75 (78)
221 PRK11906 transcriptional regul 96.8 0.023 4.9E-07 54.8 12.5 142 399-544 273-430 (458)
222 COG4105 ComL DNA uptake lipopr 96.8 0.32 7E-06 43.1 19.2 189 13-213 30-232 (254)
223 PF09205 DUF1955: Domain of un 96.8 0.16 3.5E-06 39.6 15.0 141 394-553 12-152 (161)
224 KOG2280 Vacuolar assembly/sort 96.8 0.73 1.6E-05 47.1 28.3 349 26-407 398-793 (829)
225 KOG1258 mRNA processing protei 96.8 0.63 1.4E-05 46.4 27.7 183 351-536 296-490 (577)
226 COG5107 RNA14 Pre-mRNA 3'-end 96.8 0.5 1.1E-05 45.2 28.8 87 38-128 30-118 (660)
227 KOG1130 Predicted G-alpha GTPa 96.8 0.2 4.4E-06 47.1 17.9 126 354-479 197-339 (639)
228 COG5107 RNA14 Pre-mRNA 3'-end 96.8 0.56 1.2E-05 44.9 31.6 133 383-519 396-534 (660)
229 KOG1538 Uncharacterized conser 96.7 0.14 3E-06 51.0 17.0 67 226-310 779-845 (1081)
230 PF03704 BTAD: Bacterial trans 96.6 0.0095 2.1E-07 49.4 7.8 60 489-548 64-123 (146)
231 COG1729 Uncharacterized protei 96.6 0.017 3.8E-07 51.4 9.3 57 493-549 184-243 (262)
232 COG4105 ComL DNA uptake lipopr 96.6 0.52 1.1E-05 41.9 19.5 158 391-549 41-232 (254)
233 KOG4555 TPR repeat-containing 96.5 0.03 6.6E-07 43.2 9.0 89 463-551 51-145 (175)
234 PLN03098 LPA1 LOW PSII ACCUMUL 96.5 0.36 7.9E-06 46.8 18.1 61 384-446 75-139 (453)
235 PF13512 TPR_18: Tetratricopep 96.5 0.074 1.6E-06 42.6 11.5 90 460-549 15-127 (142)
236 PF13281 DUF4071: Domain of un 96.5 0.42 9.1E-06 45.6 18.3 72 256-327 146-227 (374)
237 PF07719 TPR_2: Tetratricopept 96.4 0.01 2.2E-07 34.4 4.8 33 488-520 2-34 (34)
238 COG1729 Uncharacterized protei 96.3 0.092 2E-06 46.9 12.2 94 431-524 153-252 (262)
239 PRK11906 transcriptional regul 96.3 0.2 4.3E-06 48.6 15.2 142 368-514 274-434 (458)
240 PF00515 TPR_1: Tetratricopept 96.3 0.0094 2E-07 34.6 4.1 32 488-519 2-33 (34)
241 COG3118 Thioredoxin domain-con 96.2 0.65 1.4E-05 42.1 16.7 146 393-540 143-291 (304)
242 PF03704 BTAD: Bacterial trans 96.2 0.047 1E-06 45.2 9.5 71 386-458 64-139 (146)
243 KOG4234 TPR repeat-containing 96.2 0.032 6.9E-07 46.8 7.9 89 464-552 104-199 (271)
244 COG0457 NrfG FOG: TPR repeat [ 96.1 0.96 2.1E-05 40.7 26.0 193 353-549 60-264 (291)
245 KOG2610 Uncharacterized conser 96.0 0.14 3.1E-06 46.7 11.9 148 363-514 114-274 (491)
246 PF10300 DUF3808: Protein of u 96.0 0.39 8.3E-06 48.4 16.6 114 433-549 247-375 (468)
247 KOG1585 Protein required for f 96.0 0.54 1.2E-05 41.2 14.5 87 457-544 152-250 (308)
248 PF12921 ATP13: Mitochondrial 95.9 0.11 2.4E-06 41.2 9.8 51 415-465 48-98 (126)
249 KOG1941 Acetylcholine receptor 95.9 0.13 2.8E-06 47.5 11.1 129 388-516 126-275 (518)
250 PRK15331 chaperone protein Sic 95.8 0.24 5.1E-06 40.8 11.2 91 289-381 44-134 (165)
251 KOG2114 Vacuolar assembly/sort 95.7 3.2 6.8E-05 43.4 27.6 56 460-516 710-765 (933)
252 PF04053 Coatomer_WDAD: Coatom 95.7 1 2.3E-05 44.7 17.6 156 26-209 270-426 (443)
253 PF10300 DUF3808: Protein of u 95.5 0.54 1.2E-05 47.4 15.4 159 356-516 192-376 (468)
254 PF04053 Coatomer_WDAD: Coatom 95.5 0.77 1.7E-05 45.6 15.9 133 158-312 269-403 (443)
255 PF02259 FAT: FAT domain; Int 95.4 2.8 6E-05 40.8 21.0 149 383-534 145-305 (352)
256 COG3118 Thioredoxin domain-con 95.4 2 4.4E-05 39.1 17.5 117 326-446 143-263 (304)
257 COG4785 NlpI Lipoprotein NlpI, 95.4 1.2 2.5E-05 38.4 14.2 178 366-552 79-268 (297)
258 KOG3941 Intermediate in Toll s 95.4 0.12 2.6E-06 45.9 8.7 97 140-236 55-174 (406)
259 COG0457 NrfG FOG: TPR repeat [ 95.3 2 4.4E-05 38.5 25.8 219 296-519 37-268 (291)
260 KOG4555 TPR repeat-containing 95.3 0.071 1.5E-06 41.3 6.2 57 494-550 50-106 (175)
261 PF07035 Mic1: Colon cancer-as 95.2 1.2 2.6E-05 37.2 13.7 134 37-178 14-148 (167)
262 KOG1941 Acetylcholine receptor 95.2 1.9 4.1E-05 40.3 15.9 124 357-480 127-271 (518)
263 PF04184 ST7: ST7 protein; In 95.2 3 6.6E-05 41.0 18.1 145 288-446 174-322 (539)
264 PF13512 TPR_18: Tetratricopep 95.1 1.4 3E-05 35.5 14.1 90 15-105 8-99 (142)
265 KOG2114 Vacuolar assembly/sort 95.0 5.4 0.00012 41.8 23.8 51 357-408 710-760 (933)
266 PF13181 TPR_8: Tetratricopept 95.0 0.052 1.1E-06 31.4 4.0 32 488-519 2-33 (34)
267 smart00299 CLH Clathrin heavy 94.9 1.7 3.8E-05 35.4 15.0 127 386-532 9-136 (140)
268 PF04184 ST7: ST7 protein; In 94.9 0.83 1.8E-05 44.6 13.5 153 389-555 173-329 (539)
269 PF12921 ATP13: Mitochondrial 94.8 0.46 9.9E-06 37.8 9.8 78 283-360 3-96 (126)
270 PF14853 Fis1_TPR_C: Fis1 C-te 94.6 0.22 4.8E-06 32.2 6.2 51 523-599 3-53 (53)
271 KOG2610 Uncharacterized conser 94.5 0.38 8.2E-06 44.1 9.8 161 394-557 113-283 (491)
272 KOG3941 Intermediate in Toll s 94.5 0.43 9.4E-06 42.6 9.8 97 272-368 55-174 (406)
273 KOG0890 Protein kinase of the 94.5 11 0.00023 44.8 22.7 307 225-552 1388-1733(2382)
274 smart00299 CLH Clathrin heavy 94.5 2.2 4.8E-05 34.8 15.0 40 324-364 14-53 (140)
275 PF13176 TPR_7: Tetratricopept 94.5 0.077 1.7E-06 31.2 3.7 26 490-515 2-27 (36)
276 PRK09687 putative lyase; Provi 94.3 4.5 9.7E-05 37.6 25.4 219 115-345 33-262 (280)
277 PF13176 TPR_7: Tetratricopept 94.3 0.084 1.8E-06 31.0 3.6 26 523-548 1-26 (36)
278 KOG1550 Extracellular protein 94.3 7.9 0.00017 40.3 22.6 273 268-550 229-538 (552)
279 COG4649 Uncharacterized protei 94.3 2.7 5.8E-05 34.9 15.3 119 394-515 68-195 (221)
280 PF13174 TPR_6: Tetratricopept 94.0 0.12 2.7E-06 29.4 3.9 30 490-519 3-32 (33)
281 PRK11619 lytic murein transgly 94.0 9.8 0.00021 40.2 32.4 114 397-513 254-372 (644)
282 PF08631 SPO22: Meiosis protei 93.9 5.4 0.00012 37.2 21.5 19 496-514 255-273 (278)
283 KOG3364 Membrane protein invol 93.7 0.87 1.9E-05 35.8 9.0 64 486-549 31-99 (149)
284 PF02259 FAT: FAT domain; Int 93.5 7.9 0.00017 37.6 19.4 62 351-412 145-212 (352)
285 COG3629 DnrI DNA-binding trans 93.4 0.47 1E-05 43.2 8.4 61 489-549 155-215 (280)
286 KOG1586 Protein required for f 93.4 5.1 0.00011 35.1 14.4 19 394-412 83-101 (288)
287 PF09613 HrpB1_HrpK: Bacterial 93.3 3.2 7E-05 34.2 12.1 50 430-482 21-71 (160)
288 PF13428 TPR_14: Tetratricopep 93.3 0.34 7.4E-06 30.0 5.3 31 386-418 3-33 (44)
289 PF07035 Mic1: Colon cancer-as 93.1 4.6 9.9E-05 33.8 13.8 136 170-346 14-149 (167)
290 COG2976 Uncharacterized protei 93.1 5 0.00011 34.2 14.0 90 425-518 95-190 (207)
291 TIGR02561 HrpB1_HrpK type III 92.8 0.82 1.8E-05 36.8 7.8 72 467-538 22-95 (153)
292 KOG1586 Protein required for f 92.8 6.1 0.00013 34.7 13.4 121 387-522 96-230 (288)
293 PF09613 HrpB1_HrpK: Bacterial 92.8 0.86 1.9E-05 37.4 8.1 83 456-538 8-95 (160)
294 PRK10941 hypothetical protein; 92.6 1.2 2.7E-05 40.7 9.9 63 489-551 183-245 (269)
295 KOG1585 Protein required for f 92.4 1.9 4.1E-05 37.9 10.1 168 354-547 33-216 (308)
296 PRK09687 putative lyase; Provi 92.3 9.5 0.00021 35.5 25.0 134 383-530 141-276 (280)
297 KOG4648 Uncharacterized conser 92.0 0.37 8E-06 44.3 5.6 100 425-527 103-205 (536)
298 KOG4648 Uncharacterized conser 92.0 0.53 1.2E-05 43.3 6.6 92 391-487 104-198 (536)
299 PF10602 RPN7: 26S proteasome 91.9 4.5 9.8E-05 34.5 12.0 94 386-481 38-139 (177)
300 PF00637 Clathrin: Region in C 91.7 0.41 8.9E-06 39.4 5.4 129 57-200 12-140 (143)
301 PF09205 DUF1955: Domain of un 91.7 5.5 0.00012 31.4 13.5 59 387-446 89-147 (161)
302 PF13170 DUF4003: Protein of u 91.6 7.1 0.00015 36.6 13.9 53 33-85 78-136 (297)
303 KOG1258 mRNA processing protei 91.6 17 0.00037 36.8 31.5 178 251-430 297-486 (577)
304 COG4649 Uncharacterized protei 91.5 7.2 0.00016 32.5 13.9 88 361-448 103-196 (221)
305 COG3629 DnrI DNA-binding trans 91.5 1.8 4E-05 39.5 9.5 76 386-463 155-235 (280)
306 KOG2066 Vacuolar assembly/sort 91.3 21 0.00046 37.4 25.2 74 422-507 637-710 (846)
307 KOG4234 TPR repeat-containing 91.3 3.6 7.8E-05 35.1 10.2 105 429-533 105-214 (271)
308 PF00637 Clathrin: Region in C 91.3 0.13 2.9E-06 42.3 2.1 51 194-244 16-66 (143)
309 PF13374 TPR_10: Tetratricopep 91.2 0.54 1.2E-05 28.5 4.4 29 488-516 3-31 (42)
310 PF14853 Fis1_TPR_C: Fis1 C-te 91.2 0.85 1.8E-05 29.5 5.2 37 490-526 4-40 (53)
311 COG2976 Uncharacterized protei 90.9 8.7 0.00019 32.8 12.1 91 460-551 94-189 (207)
312 PF13170 DUF4003: Protein of u 90.9 6.3 0.00014 36.9 12.8 64 401-465 160-227 (297)
313 PF07719 TPR_2: Tetratricopept 90.9 0.34 7.4E-06 27.7 3.0 29 522-550 2-30 (34)
314 KOG1308 Hsp70-interacting prot 90.5 0.12 2.7E-06 47.4 1.2 97 467-563 126-224 (377)
315 KOG1920 IkappaB kinase complex 90.0 35 0.00076 37.8 25.5 166 292-482 861-1026(1265)
316 PF13431 TPR_17: Tetratricopep 89.9 0.29 6.3E-06 28.3 2.1 20 455-474 13-32 (34)
317 PF00515 TPR_1: Tetratricopept 89.9 0.66 1.4E-05 26.6 3.7 27 386-412 3-29 (34)
318 KOG0890 Protein kinase of the 89.9 53 0.0011 39.6 30.1 62 455-516 1670-1731(2382)
319 KOG4279 Serine/threonine prote 89.8 14 0.0003 38.4 14.5 186 335-523 181-402 (1226)
320 PF08631 SPO22: Meiosis protei 89.8 17 0.00037 33.9 24.9 23 526-548 251-273 (278)
321 KOG1920 IkappaB kinase complex 89.8 37 0.0008 37.7 22.4 79 462-547 972-1052(1265)
322 PF10602 RPN7: 26S proteasome 89.7 2.5 5.5E-05 36.1 8.5 91 456-546 37-138 (177)
323 KOG0545 Aryl-hydrocarbon recep 89.5 6 0.00013 35.0 10.3 61 490-550 233-293 (329)
324 PF07721 TPR_4: Tetratricopept 89.2 0.53 1.2E-05 25.1 2.6 23 523-545 3-25 (26)
325 smart00028 TPR Tetratricopepti 89.2 0.76 1.7E-05 25.3 3.7 30 489-518 3-32 (34)
326 KOG2066 Vacuolar assembly/sort 88.9 34 0.00073 36.0 27.0 141 221-381 393-534 (846)
327 PF13181 TPR_8: Tetratricopept 88.8 0.84 1.8E-05 26.1 3.6 28 522-549 2-29 (34)
328 PF04097 Nic96: Nup93/Nic96; 88.1 36 0.00078 36.0 17.3 69 118-186 110-188 (613)
329 PF10345 Cohesin_load: Cohesin 87.8 40 0.00088 35.7 37.5 157 90-247 61-252 (608)
330 PF13174 TPR_6: Tetratricopept 87.8 0.68 1.5E-05 26.2 2.7 28 523-550 2-29 (33)
331 PF02284 COX5A: Cytochrome c o 87.3 10 0.00022 28.4 8.9 60 402-463 28-87 (108)
332 COG4785 NlpI Lipoprotein NlpI, 87.3 19 0.00041 31.4 16.1 177 334-517 82-267 (297)
333 KOG4570 Uncharacterized conser 87.0 5.4 0.00012 36.6 8.9 102 345-447 57-163 (418)
334 PF06552 TOM20_plant: Plant sp 86.9 2.4 5.1E-05 35.6 6.2 16 503-518 96-111 (186)
335 TIGR03504 FimV_Cterm FimV C-te 86.7 1.3 2.8E-05 27.4 3.5 27 525-551 3-29 (44)
336 PRK12798 chemotaxis protein; R 86.7 33 0.00071 33.4 21.1 151 365-517 125-287 (421)
337 TIGR02508 type_III_yscG type I 86.6 11 0.00024 28.0 9.8 60 259-321 47-106 (115)
338 COG4455 ImpE Protein of avirul 86.6 3 6.5E-05 36.1 6.7 63 459-521 5-69 (273)
339 PF13374 TPR_10: Tetratricopep 86.3 1.3 2.8E-05 26.7 3.6 29 522-550 3-31 (42)
340 PRK15180 Vi polysaccharide bio 85.8 13 0.00029 36.3 11.3 122 395-519 300-423 (831)
341 cd00923 Cyt_c_Oxidase_Va Cytoc 85.7 7.3 0.00016 28.8 7.3 60 401-462 24-83 (103)
342 PRK11619 lytic murein transgly 85.4 55 0.0012 34.8 39.4 460 52-555 34-510 (644)
343 COG0790 FOG: TPR repeat, SEL1 85.4 33 0.00071 32.2 19.1 114 434-551 128-267 (292)
344 PF14561 TPR_20: Tetratricopep 85.4 2.7 5.9E-05 31.0 5.4 40 510-549 11-50 (90)
345 smart00386 HAT HAT (Half-A-TPR 85.3 1.8 4E-05 24.1 3.7 31 501-531 1-31 (33)
346 KOG0276 Vesicle coat complex C 85.0 25 0.00055 35.7 13.0 152 261-445 596-747 (794)
347 TIGR02561 HrpB1_HrpK type III 84.7 9.3 0.0002 31.0 8.3 108 419-548 7-120 (153)
348 PF11207 DUF2989: Protein of u 84.5 10 0.00022 32.7 9.0 74 466-541 118-198 (203)
349 KOG0276 Vesicle coat complex C 84.2 25 0.00054 35.8 12.5 94 100-210 598-691 (794)
350 COG3947 Response regulator con 84.0 7.5 0.00016 35.4 8.3 59 490-548 282-340 (361)
351 KOG1498 26S proteasome regulat 83.2 45 0.00097 32.0 14.5 115 459-573 135-264 (439)
352 PRK13800 putative oxidoreducta 83.0 86 0.0019 35.2 26.5 245 183-446 633-879 (897)
353 KOG4642 Chaperone-dependent E3 82.6 3.6 7.7E-05 36.2 5.6 86 428-516 19-107 (284)
354 KOG3364 Membrane protein invol 82.6 9.6 0.00021 30.3 7.3 73 452-524 29-108 (149)
355 PF04910 Tcf25: Transcriptiona 82.2 33 0.00072 33.3 12.8 120 418-549 39-167 (360)
356 KOG1550 Extracellular protein 82.1 69 0.0015 33.5 20.4 242 298-551 228-505 (552)
357 KOG2471 TPR repeat-containing 81.6 59 0.0013 32.3 14.6 120 393-534 249-382 (696)
358 PF02284 COX5A: Cytochrome c o 81.2 11 0.00024 28.2 6.9 59 168-227 28-86 (108)
359 PF07721 TPR_4: Tetratricopept 80.9 3.4 7.5E-05 21.9 3.3 18 461-478 7-24 (26)
360 KOG0551 Hsp90 co-chaperone CNS 80.7 9.8 0.00021 35.4 7.9 93 455-547 81-179 (390)
361 KOG2581 26S proteasome regulat 80.7 57 0.0012 31.6 15.5 125 396-520 138-280 (493)
362 PF06552 TOM20_plant: Plant sp 80.7 34 0.00073 29.0 10.4 69 400-469 7-83 (186)
363 cd00923 Cyt_c_Oxidase_Va Cytoc 80.5 21 0.00046 26.5 9.1 63 32-96 22-84 (103)
364 KOG3824 Huntingtin interacting 80.2 6.5 0.00014 35.9 6.6 53 496-548 125-177 (472)
365 KOG2396 HAT (Half-A-TPR) repea 79.0 74 0.0016 31.8 31.4 79 36-116 90-168 (568)
366 COG5159 RPN6 26S proteasome re 78.8 53 0.0011 30.1 13.3 49 288-336 9-64 (421)
367 PF09670 Cas_Cas02710: CRISPR- 78.6 49 0.0011 32.5 12.8 52 394-446 141-196 (379)
368 COG4976 Predicted methyltransf 78.6 3.8 8.2E-05 35.8 4.4 55 497-551 5-59 (287)
369 PF12862 Apc5: Anaphase-promot 78.5 7.9 0.00017 28.9 5.8 53 497-549 8-69 (94)
370 KOG2063 Vacuolar assembly/sort 78.2 1.1E+02 0.0024 33.5 15.8 19 27-45 356-374 (877)
371 cd08819 CARD_MDA5_2 Caspase ac 77.9 18 0.00039 26.2 6.9 65 205-271 22-86 (88)
372 PF11207 DUF2989: Protein of u 77.8 21 0.00046 30.8 8.7 75 165-240 121-198 (203)
373 COG1747 Uncharacterized N-term 77.8 81 0.0018 31.6 21.6 39 493-531 211-249 (711)
374 KOG4507 Uncharacterized conser 77.2 7.7 0.00017 39.0 6.6 100 430-532 618-721 (886)
375 PF04190 DUF410: Protein of un 76.9 61 0.0013 29.8 16.1 38 157-194 17-58 (260)
376 PF04190 DUF410: Protein of un 76.9 61 0.0013 29.8 16.7 81 219-310 89-169 (260)
377 PF07163 Pex26: Pex26 protein; 76.8 33 0.00072 31.3 9.8 87 289-375 90-181 (309)
378 KOG4642 Chaperone-dependent E3 76.3 32 0.00069 30.6 9.3 120 361-482 19-144 (284)
379 PF10579 Rapsyn_N: Rapsyn N-te 76.1 6.1 0.00013 27.9 4.1 45 499-543 18-65 (80)
380 KOG1464 COP9 signalosome, subu 76.0 61 0.0013 29.3 15.6 181 263-444 39-256 (440)
381 cd08819 CARD_MDA5_2 Caspase ac 75.5 9.3 0.0002 27.7 5.0 34 100-134 48-81 (88)
382 COG2909 MalT ATP-dependent tra 75.4 1.3E+02 0.0027 32.7 26.9 218 326-546 424-684 (894)
383 PF07720 TPR_3: Tetratricopept 75.3 13 0.00027 21.8 4.7 29 490-518 4-34 (36)
384 PF09986 DUF2225: Uncharacteri 74.6 18 0.00038 32.1 7.8 63 489-551 120-195 (214)
385 smart00028 TPR Tetratricopepti 74.6 5.9 0.00013 21.3 3.5 28 522-549 2-29 (34)
386 PF10579 Rapsyn_N: Rapsyn N-te 74.3 8.4 0.00018 27.3 4.5 46 431-476 18-64 (80)
387 PF11848 DUF3368: Domain of un 74.2 16 0.00034 23.1 5.4 41 21-61 6-46 (48)
388 COG1747 Uncharacterized N-term 73.5 1.1E+02 0.0023 30.9 20.8 48 434-481 184-231 (711)
389 TIGR03504 FimV_Cterm FimV C-te 72.7 9 0.0002 23.7 3.9 25 288-312 5-29 (44)
390 PF13929 mRNA_stabil: mRNA sta 72.6 46 0.00099 30.7 9.8 115 31-145 142-264 (292)
391 PF14863 Alkyl_sulf_dimr: Alky 72.4 19 0.00041 29.3 6.8 62 472-536 58-119 (141)
392 PF02184 HAT: HAT (Half-A-TPR) 72.2 10 0.00023 21.4 3.6 27 502-529 2-28 (32)
393 COG2912 Uncharacterized conser 72.0 38 0.00081 30.9 9.1 59 492-550 186-244 (269)
394 KOG4570 Uncharacterized conser 71.7 14 0.00031 34.1 6.4 85 29-116 76-163 (418)
395 PRK13800 putative oxidoreducta 70.4 1.9E+02 0.0041 32.5 27.5 256 240-515 624-880 (897)
396 PRK10941 hypothetical protein; 70.2 43 0.00092 30.9 9.4 67 459-525 185-253 (269)
397 PF14561 TPR_20: Tetratricopep 70.1 42 0.0009 24.8 9.8 63 485-547 20-85 (90)
398 COG4941 Predicted RNA polymera 69.5 64 0.0014 30.4 10.0 119 399-522 271-400 (415)
399 PF07163 Pex26: Pex26 protein; 69.3 56 0.0012 29.9 9.4 87 157-243 90-181 (309)
400 COG2909 MalT ATP-dependent tra 69.1 1.8E+02 0.0038 31.7 27.9 218 261-481 425-685 (894)
401 TIGR02270 conserved hypothetic 69.0 1.3E+02 0.0027 30.0 22.7 36 108-143 89-124 (410)
402 KOG2396 HAT (Half-A-TPR) repea 68.8 1.3E+02 0.0029 30.1 29.6 97 452-548 456-557 (568)
403 COG5191 Uncharacterized conser 67.8 12 0.00025 34.5 5.1 80 451-530 103-185 (435)
404 PF13762 MNE1: Mitochondrial s 67.4 68 0.0015 26.2 8.9 77 122-198 42-128 (145)
405 TIGR02508 type_III_yscG type I 67.4 51 0.0011 24.8 8.2 49 128-178 48-96 (115)
406 KOG4077 Cytochrome c oxidase, 66.8 35 0.00076 26.8 6.7 58 403-462 68-125 (149)
407 PF14432 DYW_deaminase: DYW fa 66.7 4.7 0.0001 31.5 2.2 20 557-580 2-21 (116)
408 PF11663 Toxin_YhaV: Toxin wit 65.6 8.1 0.00018 30.6 3.2 31 30-62 108-138 (140)
409 PF11846 DUF3366: Domain of un 65.6 26 0.00055 30.5 6.9 35 484-518 141-175 (193)
410 PF08311 Mad3_BUB1_I: Mad3/BUB 64.6 45 0.00097 26.6 7.5 42 505-546 81-124 (126)
411 KOG0376 Serine-threonine phosp 64.4 15 0.00032 36.2 5.4 91 429-522 14-107 (476)
412 KOG4567 GTPase-activating prot 64.4 1.1E+02 0.0025 28.4 10.5 86 404-496 263-358 (370)
413 KOG2422 Uncharacterized conser 61.9 1.4E+02 0.0031 30.5 11.5 132 429-560 248-418 (665)
414 PF04097 Nic96: Nup93/Nic96; 61.8 2.2E+02 0.0048 30.2 24.5 64 19-83 113-183 (613)
415 KOG2062 26S proteasome regulat 59.1 2.5E+02 0.0054 29.9 30.6 118 394-515 511-634 (929)
416 PF03745 DUF309: Domain of unk 58.9 53 0.0012 22.2 5.9 52 23-74 5-61 (62)
417 COG0735 Fur Fe2+/Zn2+ uptake r 58.7 42 0.00091 27.5 6.5 64 38-103 7-70 (145)
418 KOG1464 COP9 signalosome, subu 58.3 1.5E+02 0.0032 27.1 17.0 194 215-408 21-255 (440)
419 PF09670 Cas_Cas02710: CRISPR- 58.1 1.8E+02 0.0039 28.7 11.8 56 290-346 139-198 (379)
420 KOG2062 26S proteasome regulat 57.8 2.6E+02 0.0057 29.8 29.0 166 428-598 510-681 (929)
421 PF11846 DUF3366: Domain of un 57.5 43 0.00094 29.1 6.9 51 431-481 120-170 (193)
422 COG4455 ImpE Protein of avirul 56.9 1.4E+02 0.003 26.4 12.7 124 387-522 4-140 (273)
423 PF09477 Type_III_YscG: Bacter 56.9 86 0.0019 23.9 9.1 92 68-163 22-113 (116)
424 COG4976 Predicted methyltransf 55.8 23 0.00049 31.2 4.5 56 466-521 6-63 (287)
425 KOG4077 Cytochrome c oxidase, 54.7 73 0.0016 25.1 6.6 47 36-82 68-114 (149)
426 COG3947 Response regulator con 54.7 90 0.002 28.8 8.1 69 285-354 282-355 (361)
427 PF13762 MNE1: Mitochondrial s 53.7 1.2E+02 0.0027 24.8 8.8 82 152-233 41-128 (145)
428 KOG0376 Serine-threonine phosp 53.7 23 0.0005 34.9 4.7 102 391-497 11-115 (476)
429 PF13934 ELYS: Nuclear pore co 53.2 1.7E+02 0.0037 26.2 11.4 11 397-407 121-131 (226)
430 COG0790 FOG: TPR repeat, SEL1 53.1 2E+02 0.0043 26.9 18.9 144 368-516 93-266 (292)
431 PF13934 ELYS: Nuclear pore co 51.1 1.8E+02 0.004 26.0 13.3 105 386-499 78-184 (226)
432 PF12862 Apc5: Anaphase-promot 50.8 1E+02 0.0022 22.9 8.4 64 25-88 6-77 (94)
433 PF11768 DUF3312: Protein of u 50.7 1.9E+02 0.0042 29.5 10.5 24 356-379 412-435 (545)
434 cd08326 CARD_CASP9 Caspase act 50.3 54 0.0012 23.8 5.1 32 266-297 45-76 (84)
435 KOG1114 Tripeptidyl peptidase 50.2 3.9E+02 0.0085 29.5 13.5 72 400-471 1212-1283(1304)
436 PF04781 DUF627: Protein of un 50.2 1.1E+02 0.0024 23.6 6.9 42 505-546 62-103 (111)
437 KOG0545 Aryl-hydrocarbon recep 50.0 2E+02 0.0043 26.0 11.3 63 457-519 232-296 (329)
438 KOG0292 Vesicle coat complex C 50.0 1.1E+02 0.0024 33.0 9.0 159 357-551 625-783 (1202)
439 PF04090 RNA_pol_I_TF: RNA pol 49.9 1.8E+02 0.0038 25.4 9.7 28 386-413 43-70 (199)
440 PF11848 DUF3368: Domain of un 49.9 64 0.0014 20.4 4.9 33 161-193 13-45 (48)
441 cd08326 CARD_CASP9 Caspase act 49.7 32 0.00068 25.0 3.9 33 101-133 43-75 (84)
442 PF12968 DUF3856: Domain of Un 49.6 1.3E+02 0.0027 23.7 9.5 59 489-547 57-126 (144)
443 PRK14700 recombination factor 49.6 2E+02 0.0044 26.9 9.8 64 285-348 126-197 (300)
444 PF08967 DUF1884: Domain of un 49.5 19 0.00041 25.5 2.5 24 579-602 6-29 (85)
445 PF05119 Terminase_4: Phage te 48.5 51 0.0011 24.7 5.2 31 574-604 57-87 (100)
446 PF08311 Mad3_BUB1_I: Mad3/BUB 48.2 1.3E+02 0.0029 23.9 7.6 80 31-113 40-124 (126)
447 PF10366 Vps39_1: Vacuolar sor 48.0 1.3E+02 0.0027 23.2 7.3 27 152-178 41-67 (108)
448 KOG4507 Uncharacterized conser 47.1 71 0.0015 32.6 6.9 134 416-552 568-707 (886)
449 KOG2063 Vacuolar assembly/sort 47.0 4.4E+02 0.0096 29.2 23.1 27 284-310 506-532 (877)
450 PF14669 Asp_Glu_race_2: Putat 45.7 2E+02 0.0043 24.9 14.5 55 191-245 138-206 (233)
451 PF08424 NRDE-2: NRDE-2, neces 45.4 2.8E+02 0.0061 26.5 16.1 163 377-555 11-214 (321)
452 PRK13342 recombination factor 44.4 3.4E+02 0.0073 27.1 17.7 47 285-331 230-279 (413)
453 COG5108 RPO41 Mitochondrial DN 44.2 1.3E+02 0.0028 31.3 8.3 47 389-435 33-81 (1117)
454 PF10516 SHNi-TPR: SHNi-TPR; 44.1 63 0.0014 19.2 3.9 28 489-516 3-30 (38)
455 PF11838 ERAP1_C: ERAP1-like C 42.7 3E+02 0.0066 26.1 16.8 82 435-516 146-230 (324)
456 PRK10564 maltose regulon perip 42.7 51 0.0011 30.6 4.9 39 283-321 258-296 (303)
457 PF11663 Toxin_YhaV: Toxin wit 42.0 32 0.0007 27.4 3.1 33 292-326 105-137 (140)
458 PF10255 Paf67: RNA polymerase 41.7 3.6E+02 0.0078 26.7 12.4 211 11-226 69-318 (404)
459 KOG1811 Predicted Zn2+-binding 41.2 1.9E+02 0.0042 29.6 8.9 73 457-530 558-631 (1141)
460 COG0735 Fur Fe2+/Zn2+ uptake r 40.8 1.4E+02 0.003 24.6 6.8 64 172-236 8-71 (145)
461 PF04910 Tcf25: Transcriptiona 40.8 3.6E+02 0.0077 26.4 15.9 57 390-446 109-166 (360)
462 KOG2471 TPR repeat-containing 40.7 4E+02 0.0087 26.9 11.2 61 494-557 213-273 (696)
463 TIGR02270 conserved hypothetic 40.3 3.9E+02 0.0085 26.7 24.7 191 138-344 88-279 (410)
464 PF11817 Foie-gras_1: Foie gra 40.1 1.1E+02 0.0023 28.0 6.8 18 428-445 187-204 (247)
465 PF11838 ERAP1_C: ERAP1-like C 39.8 3.4E+02 0.0073 25.8 17.0 80 333-412 146-229 (324)
466 KOG0530 Protein farnesyltransf 39.7 3E+02 0.0066 25.2 11.7 85 472-556 95-182 (318)
467 cd00280 TRFH Telomeric Repeat 39.6 2.5E+02 0.0053 24.2 9.5 23 156-178 117-139 (200)
468 PF09986 DUF2225: Uncharacteri 39.1 2.4E+02 0.0053 25.0 8.6 63 455-517 118-195 (214)
469 PF07575 Nucleopor_Nup85: Nup8 39.1 4.9E+02 0.011 27.4 19.2 72 269-342 392-463 (566)
470 PF12926 MOZART2: Mitotic-spin 39.0 1.5E+02 0.0033 21.6 5.9 45 38-82 29-73 (88)
471 PF14689 SPOB_a: Sensor_kinase 38.8 60 0.0013 21.9 3.7 26 421-446 25-50 (62)
472 PRK11639 zinc uptake transcrip 38.8 1.3E+02 0.0028 25.5 6.6 60 177-237 18-77 (169)
473 KOG4279 Serine/threonine prote 38.5 3.9E+02 0.0084 28.7 10.6 158 11-178 195-394 (1226)
474 PRK10564 maltose regulon perip 37.7 59 0.0013 30.2 4.6 36 153-188 260-295 (303)
475 PF10345 Cohesin_load: Cohesin 37.5 5.3E+02 0.012 27.4 36.5 177 36-213 40-253 (608)
476 PF14689 SPOB_a: Sensor_kinase 36.8 62 0.0014 21.8 3.6 26 387-412 26-51 (62)
477 PHA02537 M terminase endonucle 36.2 3.2E+02 0.007 24.5 9.2 111 392-525 91-215 (230)
478 TIGR01558 sm_term_P27 phage te 36.0 1.2E+02 0.0027 23.6 5.7 30 575-604 67-96 (116)
479 COG2256 MGS1 ATPase related to 35.8 4.4E+02 0.0096 26.0 12.3 52 280-331 244-298 (436)
480 PF11817 Foie-gras_1: Foie gra 35.7 1.4E+02 0.003 27.2 6.9 52 493-544 184-241 (247)
481 cd08332 CARD_CASP2 Caspase act 35.6 1.1E+02 0.0025 22.5 5.1 27 267-293 50-76 (90)
482 cd08332 CARD_CASP2 Caspase act 35.5 76 0.0017 23.4 4.1 28 103-130 49-76 (90)
483 PF02607 B12-binding_2: B12 bi 34.2 1.1E+02 0.0023 21.7 4.8 45 18-62 2-46 (79)
484 PHA02875 ankyrin repeat protei 34.1 4.8E+02 0.01 25.9 14.5 209 23-245 5-224 (413)
485 PRK13342 recombination factor 33.2 5.1E+02 0.011 25.9 18.5 99 314-431 173-277 (413)
486 PRK09462 fur ferric uptake reg 33.2 2.6E+02 0.0056 22.9 7.5 61 175-236 7-68 (148)
487 KOG4814 Uncharacterized conser 33.0 1.5E+02 0.0032 30.8 6.8 84 431-516 366-457 (872)
488 KOG3824 Huntingtin interacting 32.7 74 0.0016 29.5 4.3 49 430-481 127-176 (472)
489 COG5071 RPN5 26S proteasome re 32.4 4.2E+02 0.0092 24.8 14.6 118 457-574 133-265 (439)
490 PF04034 DUF367: Domain of unk 32.3 2.6E+02 0.0056 22.3 7.6 58 455-512 66-124 (127)
491 PF10475 DUF2450: Protein of u 32.1 4.1E+02 0.0089 24.9 9.5 26 285-310 130-155 (291)
492 COG4259 Uncharacterized protei 31.4 1.8E+02 0.0039 21.8 5.2 25 521-545 72-96 (121)
493 PRK14962 DNA polymerase III su 31.3 5.2E+02 0.011 26.4 10.6 32 293-324 254-285 (472)
494 cd07153 Fur_like Ferric uptake 31.1 1.2E+02 0.0026 23.5 5.0 44 156-199 6-49 (116)
495 TIGR02710 CRISPR-associated pr 31.1 5.2E+02 0.011 25.4 12.3 52 393-444 139-196 (380)
496 cd02679 MIT_spastin MIT: domai 30.6 1.1E+02 0.0025 21.9 4.1 42 499-549 20-67 (79)
497 KOG1308 Hsp70-interacting prot 29.7 95 0.0021 29.4 4.5 117 329-448 126-244 (377)
498 PF08424 NRDE-2: NRDE-2, neces 29.6 5.1E+02 0.011 24.8 14.8 105 484-600 62-170 (321)
499 cd00280 TRFH Telomeric Repeat 29.6 3.7E+02 0.008 23.2 9.6 37 494-531 118-154 (200)
500 PRK11639 zinc uptake transcrip 29.5 2.3E+02 0.005 24.0 6.7 37 331-367 39-75 (169)
No 1
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=1.6e-83 Score=691.89 Aligned_cols=588 Identities=28% Similarity=0.505 Sum_probs=531.3
Q ss_pred CCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHhhhcCChhHHHHHHHHHHHhCCCCCchh
Q 007400 10 INRKNLPNNCLIQSFLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTF 89 (605)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 89 (605)
..|+..+|+.++.+ +.+.|++++|+++|++|...|+.||..||+.++++|+..+++..+.+++..+.+.|..++..
T Consensus 148 ~~~d~~~~n~li~~---~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~- 223 (857)
T PLN03077 148 PERDLFSWNVLVGG---YAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVD- 223 (857)
T ss_pred CCCCeeEHHHHHHH---HHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccc-
Confidence 45788888887775 56789999999999999999999999999999999999999999999999999999988888
Q ss_pred hHHHHHHHHHhcCChhHHHHHhccCCCCCchHHHHHHHHHHccCChHHHHHHHhhcC----CCCceeHHHHHHHHHhcCC
Q 007400 90 LSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMA----ERDVVSWNTMIIGYAKSGA 165 (605)
Q Consensus 90 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~~~ 165 (605)
++++++.+|+++|++++|..+|++|..+|..+||++|.+|++.|++++|.++|++|. .||..||+.++.+|++.|+
T Consensus 224 ~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~ 303 (857)
T PLN03077 224 VVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGD 303 (857)
T ss_pred hHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCC
Confidence 999999999999999999999999999999999999999999999999999999995 3677777777777766666
Q ss_pred hHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCh-------------------------------HHHHHHHHHHHHh
Q 007400 166 VEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEEL-------------------------------KLTRQVHGQVLVT 214 (605)
Q Consensus 166 ~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~-------------------------------~~a~~~~~~~~~~ 214 (605)
.+.+.+++..|.+.|+.||..+|+.++.+|++.|++ ++|.++|++|.+.
T Consensus 304 ~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~ 383 (857)
T PLN03077 304 ERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQD 383 (857)
T ss_pred hHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 666666666666666666665555555555555554 4555555555555
Q ss_pred CCCCChhHHHHHHHHHHhcCChHHHHHHHhhcCC----CCcchHHHHHHHHHhcCChHHHHHHHhhCCCCChhhHHHHHH
Q 007400 215 GFLSNVVISSSIVDAYAKCGELSDARRLFDETDA----RDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIA 290 (605)
Q Consensus 215 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~ 290 (605)
|+.||..+|+.++.+|++.|+++.|.++++.+.+ ++..+++.++.+|++.|++++|.++|++|.++|..+|+.++.
T Consensus 384 g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~ 463 (857)
T PLN03077 384 NVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIA 463 (857)
T ss_pred CCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHH
Confidence 5555555555555555555555555555555543 256678889999999999999999999999999999999999
Q ss_pred HHHhCCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhcccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHH
Q 007400 291 GYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLND 370 (605)
Q Consensus 291 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 370 (605)
+|++.|+.++|+.+|++|.. ++.||..||+.++.+|++.|+++.+.+++..+.+.|+.++..++++|+++|+++|++++
T Consensus 464 ~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~ 542 (857)
T PLN03077 464 GLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNY 542 (857)
T ss_pred HHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHH
Confidence 99999999999999999986 59999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHchHhhC
Q 007400 371 GRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLG 450 (605)
Q Consensus 371 A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 450 (605)
|.++|+.+ .+|..+|+++|.+|++.|+.++|+++|++|.+.|+.||..||+.++.+|.+.|++++|.++|+.|.++.|
T Consensus 543 A~~~f~~~--~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~g 620 (857)
T PLN03077 543 AWNQFNSH--EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYS 620 (857)
T ss_pred HHHHHHhc--CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhC
Confidence 99999999 5699999999999999999999999999999999999999999999999999999999999999997789
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHH
Q 007400 451 IIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSI 530 (605)
Q Consensus 451 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 530 (605)
+.|+..+|++++++|.+.|++++|.+++++|+.+||..+|.+|+.+|..+|+.+.++...+++++++|++...|..|+++
T Consensus 621 i~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ 700 (857)
T PLN03077 621 ITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNL 700 (857)
T ss_pred CCCchHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCchHHHHHHHHHHhCCCcCCCceeEEEECCEEEEEEeCCCCCcchHHHHHHHHHHHHHHhhCCCCCCCC
Q 007400 531 YSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQMGEDAPSLDAD 604 (605)
Q Consensus 531 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 604 (605)
|...|+|++|.++++.|.+.|++|.|++||+++.+.+|.|..+|.+||+.++|+.+|+++..+|++.||+||++
T Consensus 701 ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~g~~~~~~ 774 (857)
T PLN03077 701 YADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIKEINTVLEGFYEKMKASGLAGSES 774 (857)
T ss_pred HHHCCChHHHHHHHHHHHHcCCCCCCCccEEEECCEEEEEecCCCCCcchHHHHHHHHHHHHHHHhCCcCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999964
No 2
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=2.6e-76 Score=621.13 Aligned_cols=524 Identities=29% Similarity=0.513 Sum_probs=499.4
Q ss_pred CCChhhHHHHHHHhhhcCChhHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCChhHHHHHhccCC----CCCchHHHH
Q 007400 49 RLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIP----VKNLFSYNN 124 (605)
Q Consensus 49 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~----~~~~~~~~~ 124 (605)
..+..+++.++..+.+.|++++|.++|+.|...++..++..+|+.++.+|++.++++.+..++..|. .||..+|+.
T Consensus 84 ~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~ 163 (697)
T PLN03081 84 RKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNR 163 (697)
T ss_pred CCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHH
Confidence 3456689999999999999999999999998776444444499999999999999999999998886 478899999
Q ss_pred HHHHHHccCChHHHHHHHhhcCCCCceeHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCChHHH
Q 007400 125 MLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLT 204 (605)
Q Consensus 125 li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a 204 (605)
++..|++.|++++|.++|++|.+||..+|+.+|.+|++.|++++|+++|++|.+.|+.|+..||+.++.+|.+.|..+.+
T Consensus 164 Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~ 243 (697)
T PLN03081 164 VLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAG 243 (697)
T ss_pred HHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhcCCCCcchHHHHHHHHHhcCChHHHHHHHhhCCCCChhh
Q 007400 205 RQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVS 284 (605)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~ 284 (605)
.+++..+.+.|+.||..+++.|+.+|+++|++++|. ++|++|.++|+.+
T Consensus 244 ~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~-------------------------------~vf~~m~~~~~vt 292 (697)
T PLN03081 244 QQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDAR-------------------------------CVFDGMPEKTTVA 292 (697)
T ss_pred HHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHH-------------------------------HHHHhCCCCChhH
Confidence 999999999999999999999999999999888888 6666666778889
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhcccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHh
Q 007400 285 WTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSK 364 (605)
Q Consensus 285 ~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 364 (605)
||.++.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.|.+++..|.+.|++++..+++.|+++|++
T Consensus 293 ~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k 372 (697)
T PLN03081 293 WNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSK 372 (697)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCChHHHHHHHHhcCCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHH
Q 007400 365 CGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFES 444 (605)
Q Consensus 365 ~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 444 (605)
+|++++|.++|+.|..+ |..+||+||.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|.+.|.+++|.++|+.
T Consensus 373 ~G~~~~A~~vf~~m~~~-d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~ 451 (697)
T PLN03081 373 WGRMEDARNVFDRMPRK-NLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQS 451 (697)
T ss_pred CCCHHHHHHHHHhCCCC-CeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHH
Confidence 99999999999999876 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHhhCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchH
Q 007400 445 MTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATH 524 (605)
Q Consensus 445 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 524 (605)
|.++.++.|+..+|+.++++|++.|++++|.+++++++..|+..+|+.++.+|..+|+++.|..+++++++..|++..+|
T Consensus 452 m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y 531 (697)
T PLN03081 452 MSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNY 531 (697)
T ss_pred HHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcch
Confidence 98778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHHhCCCcCCCceeEEEECCEEEEEEeCCCCCcchHHHHHHHHHHHHHHhhCCCCCCCC
Q 007400 525 GLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQMGEDAPSLDAD 604 (605)
Q Consensus 525 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 604 (605)
..|+.+|.+.|+|++|.++++.|.+.|+++.|++||+++.+.+|.|..+|..||..++++++|.++..+|++.||+||++
T Consensus 532 ~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~gy~~~~~ 611 (697)
T PLN03081 532 VVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYGYVAEEN 611 (697)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCCeeEEEECCeEEEEccCCCCCccHHHHHHHHHHHHHHHHHcCCCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999974
No 3
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=5.9e-68 Score=571.27 Aligned_cols=520 Identities=26% Similarity=0.402 Sum_probs=489.6
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHhhhcCChhHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCChh
Q 007400 26 SLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDV 105 (605)
Q Consensus 26 ~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 105 (605)
.+++.|++++|..+|+.|.+.|++|+..+|..++++|...+..+.+.+++..+.+.+..++.. .+++++..|++.|+++
T Consensus 60 ~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~n~li~~~~~~g~~~ 138 (857)
T PLN03077 60 ALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVR-LGNAMLSMFVRFGELV 138 (857)
T ss_pred HHHhCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCch-HHHHHHHHHHhCCChH
Confidence 788899999999999999999999999999999999999999999999999999999887776 9999999999999999
Q ss_pred HHHHHhccCCCCCchHHHHHHHHHHccCChHHHHHHHhhcC----CCCc-------------------------------
Q 007400 106 DARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMA----ERDV------------------------------- 150 (605)
Q Consensus 106 ~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~----~~~~------------------------------- 150 (605)
.|.++|++|.++|..+|+.+|.+|++.|++++|.++|++|. .||.
T Consensus 139 ~A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~ 218 (857)
T PLN03077 139 HAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGF 218 (857)
T ss_pred HHHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999985 2544
Q ss_pred ----eeHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHH
Q 007400 151 ----VSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSI 226 (605)
Q Consensus 151 ----~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 226 (605)
.+|+.||.+|++.|+++.|.++|+.|.+ ||..+|+++|.+|++.|++++|.++|.+|.+.|+.||..+|+.+
T Consensus 219 ~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~----~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~l 294 (857)
T PLN03077 219 ELDVDVVNALITMYVKCGDVVSARLVFDRMPR----RDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSV 294 (857)
T ss_pred CcccchHhHHHHHHhcCCCHHHHHHHHhcCCC----CCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHH
Confidence 4556777777888888888888888864 78888999999999999999999999999999999999999999
Q ss_pred HHHHHhcCChHHHHHHHhhcCC----CCcchHHHHHHHHHhcCChHHHHHHHhhCCCCChhhHHHHHHHHHhCCChHHHH
Q 007400 227 VDAYAKCGELSDARRLFDETDA----RDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKAL 302 (605)
Q Consensus 227 ~~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 302 (605)
+.++++.|+.+.+.+++..+.. +|..+|+.++.+|++.|++++|.++|++|..+|..+||.++.+|.+.|++++|+
T Consensus 295 l~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~ 374 (857)
T PLN03077 295 ISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKAL 374 (857)
T ss_pred HHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHH
Confidence 9999999999999999988865 488999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHCCCCCChHHHHHHHHHHhcccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCCCC
Q 007400 303 ELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKE 382 (605)
Q Consensus 303 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 382 (605)
++|++|.+.|+.||..||+.++.+|++.|+++.|.++++.+.+.|+.++..+++.|+++|++.|++++|.++|+.|..+
T Consensus 375 ~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~- 453 (857)
T PLN03077 375 ETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEK- 453 (857)
T ss_pred HHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCC-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CcchHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHchHhhCCCCCHHHHHHHH
Q 007400 383 NSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLI 462 (605)
Q Consensus 383 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~ 462 (605)
|..+|+++|.+|++.|+.++|+.+|++|.. ++.||..||+.++.+|++.|+.+.+.+++..+. +.|+.++..+++.|+
T Consensus 454 d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~-~~g~~~~~~~~naLi 531 (857)
T PLN03077 454 DVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVL-RTGIGFDGFLPNALL 531 (857)
T ss_pred CeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHH-HhCCCccceechHHH
Confidence 999999999999999999999999999986 599999999999999999999999999999999 669999999999999
Q ss_pred HHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCCCCchHHHHHHHHHhcCCchHH
Q 007400 463 ELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQ--NPQSSATHGLLSSIYSALGKGRLV 540 (605)
Q Consensus 463 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~g~~~~a 540 (605)
++|.++|++++|.++|+++ ++|..+|+.++.+|.++|+.++|.++|++|.+. .| |..+|..++.+|.+.|++++|
T Consensus 532 ~~y~k~G~~~~A~~~f~~~--~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~P-d~~T~~~ll~a~~~~g~v~ea 608 (857)
T PLN03077 532 DLYVRCGRMNYAWNQFNSH--EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNP-DEVTFISLLCACSRSGMVTQG 608 (857)
T ss_pred HHHHHcCCHHHHHHHHHhc--CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-CcccHHHHHHHHhhcChHHHH
Confidence 9999999999999999998 699999999999999999999999999999986 67 889999999999999999999
Q ss_pred HHHHHHHH-hCCCcCCC
Q 007400 541 EKVRQLIN-ERQFKKEQ 556 (605)
Q Consensus 541 ~~~~~~~~-~~~~~~~~ 556 (605)
.++|+.|. +.|+.|..
T Consensus 609 ~~~f~~M~~~~gi~P~~ 625 (857)
T PLN03077 609 LEYFHSMEEKYSITPNL 625 (857)
T ss_pred HHHHHHHHHHhCCCCch
Confidence 99999998 67877654
No 4
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=1.9e-63 Score=524.89 Aligned_cols=506 Identities=14% Similarity=0.185 Sum_probs=469.5
Q ss_pred CCCChhhHHHHHHHhhhcCChhHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCChhHHHHHhccCCCCCchHHHHHHH
Q 007400 48 IRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLS 127 (605)
Q Consensus 48 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~ 127 (605)
..++...|..++..|++.|++++|.++++.|.+.+..++....++.++..|.+.|.+++|..+|+.|..|+..+|+.++.
T Consensus 366 ~~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~ 445 (1060)
T PLN03218 366 GKRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMS 445 (1060)
T ss_pred CCCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 34677889999999999999999999999999999877666578889999999999999999999999999999999999
Q ss_pred HHHccCChHHHHHHHhhcC----CCCceeHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCChHH
Q 007400 128 GYANLGMMKHARNLFDNMA----ERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKL 203 (605)
Q Consensus 128 ~~~~~~~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~ 203 (605)
+|++.|+++.|.++|+.|. .||..+|+.||.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++
T Consensus 446 a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~ee 525 (1060)
T PLN03218 446 VCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAK 525 (1060)
T ss_pred HHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHH
Confidence 9999999999999999997 489999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhcC------CCCcchHHHHHHHHHhcCChHHHHHHHhhC
Q 007400 204 TRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETD------ARDVLTWTTMVSGYAKLGDMESASKLFNEM 277 (605)
Q Consensus 204 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~------~~~~~~~~~li~~~~~~~~~~~A~~~~~~~ 277 (605)
|.++|+.|.+.|+.||..+|+.|+.+|++.|++++|.++|++|. .+|..+|+.+|.+|++.|++++|.++|+.|
T Consensus 526 Al~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M 605 (1060)
T PLN03218 526 AFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMI 605 (1060)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999995 358899999999999999999999999999
Q ss_pred CC----CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhcccchHHHHHHHHHHHHcCCCCChh
Q 007400 278 PE----KNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTI 353 (605)
Q Consensus 278 ~~----~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 353 (605)
.+ ++..+|+.+|.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++.|++++|.++++.|.+.|+.|+..
T Consensus 606 ~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~ 685 (1060)
T PLN03218 606 HEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTV 685 (1060)
T ss_pred HHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHH
Confidence 75 57799999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhcCC---CCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 007400 354 VMSSLIDMYSKCGCLNDGRQVFDLTDN---KENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACT 430 (605)
Q Consensus 354 ~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~ 430 (605)
+|+.|+.+|++.|++++|.++|+.|.. .||..+|+.+|.+|++.|++++|.++|++|...|+.||..||+.++.+|+
T Consensus 686 tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~ 765 (1060)
T PLN03218 686 SYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASE 765 (1060)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 999999999999999999999998863 58999999999999999999999999999999999999999999999999
Q ss_pred ccCcHHHHHHHHHHchHhhCCCCCHHHHHHHHHHHHh----c-------------------CChHHHHHHHHhC---CCC
Q 007400 431 HSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQ----A-------------------GCSDQLMNQLEKM---PYE 484 (605)
Q Consensus 431 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~-------------------g~~~~A~~~~~~~---~~~ 484 (605)
+.|+++.|..++.+|. +.|+.||..+|+.++..+.+ + +..++|..+|++| +..
T Consensus 766 k~G~le~A~~l~~~M~-k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~ 844 (1060)
T PLN03218 766 RKDDADVGLDLLSQAK-EDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTL 844 (1060)
T ss_pred HCCCHHHHHHHHHHHH-HcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCC
Confidence 9999999999999999 66999999999999876432 2 2246789999988 478
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-CCCCCchHHHHHHHHHhcCCc-hHHHHHHHHHHhCCCcCCCc
Q 007400 485 HDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQ-NPQSSATHGLLSSIYSALGKG-RLVEKVRQLINERQFKKEQA 557 (605)
Q Consensus 485 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~~~~~~~~~~ 557 (605)
||..+|..++.++...+..+.+..+++.+... .+.+..+|..+++.+ |++ ++|..++++|...|+.|...
T Consensus 845 Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~---~~~~~~A~~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 845 PTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGF---GEYDPRAFSLLEEAASLGVVPSVS 916 (1060)
T ss_pred CCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhh---ccChHHHHHHHHHHHHcCCCCCcc
Confidence 99999999998877888899888888876544 455788999999987 443 58999999999999987764
No 5
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=9.6e-62 Score=511.99 Aligned_cols=494 Identities=16% Similarity=0.245 Sum_probs=454.7
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHcCC-CCChhhHHHHHHHhhhcCChhHHHHHHHHHHHhCCCCCchhhHHHHHH
Q 007400 18 NCLIQSFLSLISKGQLSEAISSLDLLAQRGI-RLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLIS 96 (605)
Q Consensus 18 ~~~~~~~~~~~~~g~~~~a~~~~~~~~~~g~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 96 (605)
...+..+..+++.|++++|+++|+.|.+.|+ .++..++..++.+|.+.|..++|..++..|.. ++.. +|+.++.
T Consensus 371 ~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~-Tyn~LL~ 445 (1060)
T PLN03218 371 PEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLS-TFNMLMS 445 (1060)
T ss_pred hHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHH-HHHHHHH
Confidence 3445555577789999999999999999995 46777888899999999999999999887753 5555 9999999
Q ss_pred HHHhcCChhHHHHHhccCC----CCCchHHHHHHHHHHccCChHHHHHHHhhcC----CCCceeHHHHHHHHHhcCChHH
Q 007400 97 MYFKCGSDVDARKVFDKIP----VKNLFSYNNMLSGYANLGMMKHARNLFDNMA----ERDVVSWNTMIIGYAKSGAVEE 168 (605)
Q Consensus 97 ~~~~~g~~~~a~~~~~~~~----~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~~~~~~ 168 (605)
+|++.|++++|.++|++|. .||..+|+.+|.+|++.|++++|.++|++|. .||..+|+.+|.+|++.|++++
T Consensus 446 a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~ee 525 (1060)
T PLN03218 446 VCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAK 525 (1060)
T ss_pred HHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHH
Confidence 9999999999999999997 4789999999999999999999999999998 4899999999999999999999
Q ss_pred HHHHHHHHHhCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHH--hCCCCChhHHHHHHHHHHhcCChHHHHHHHhhc
Q 007400 169 GLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLV--TGFLSNVVISSSIVDAYAKCGELSDARRLFDET 246 (605)
Q Consensus 169 a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 246 (605)
|.++|+.|.+.|+.||..+|+.+|.+|++.|++++|.+++++|.. .|+.||..+|+.++.+|++.|++++|.++|++|
T Consensus 526 Al~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M 605 (1060)
T PLN03218 526 AFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMI 605 (1060)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999987 578999999999999999999999999999999
Q ss_pred CCC----CcchHHHHHHHHHhcCChHHHHHHHhhCCC----CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChH
Q 007400 247 DAR----DVLTWTTMVSGYAKLGDMESASKLFNEMPE----KNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQH 318 (605)
Q Consensus 247 ~~~----~~~~~~~li~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ 318 (605)
.+. +..+|+.+|.+|++.|++++|.++|++|.+ ||..+|+.++.+|++.|++++|.+++++|.+.|+.||..
T Consensus 606 ~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~ 685 (1060)
T PLN03218 606 HEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTV 685 (1060)
T ss_pred HHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHH
Confidence 865 668999999999999999999999999974 799999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCC---CCCcchHHHHHHHHH
Q 007400 319 TFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDN---KENSMLWNTMISALT 395 (605)
Q Consensus 319 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~~l~~~~~ 395 (605)
+|+.++.+|++.|++++|.++|++|.+.|+.|+..+|+.||.+|++.|++++|.++|++|.. .||..+|+.++.+|+
T Consensus 686 tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~ 765 (1060)
T PLN03218 686 SYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASE 765 (1060)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999998863 489999999999999
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc----c-------------------CcHHHHHHHHHHchHhhCCC
Q 007400 396 QHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTH----S-------------------GLVQEGLTYFESMTHDLGII 452 (605)
Q Consensus 396 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~----~-------------------g~~~~a~~~~~~~~~~~~~~ 452 (605)
+.|+.++|.+++.+|.+.|+.||..+|+.++..|.+ . +..+.|..+|++|. +.|+.
T Consensus 766 k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~-~~Gi~ 844 (1060)
T PLN03218 766 RKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETI-SAGTL 844 (1060)
T ss_pred HCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHH-HCCCC
Confidence 999999999999999999999999999999876532 1 12467999999999 66999
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHhCC---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCC
Q 007400 453 PNQEHHACLIELLAQAGCSDQLMNQLEKMP---YEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQ--NPQ 519 (605)
Q Consensus 453 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~p~ 519 (605)
||..+|+.++.++.+.+..+.+..+++.+. ..|+..+|+.++.++.+. .++|..++++|.+. .|+
T Consensus 845 Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~Gi~p~ 914 (1060)
T PLN03218 845 PTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLGVVPS 914 (1060)
T ss_pred CCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcCCCCC
Confidence 999999999999999999999999999884 557789999999988432 46899999999987 553
No 6
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1.4e-56 Score=471.64 Aligned_cols=442 Identities=21% Similarity=0.336 Sum_probs=381.7
Q ss_pred HHHhcCChhHHHHHHHHHHHcC-CCCChhhHHHHHHHhhhcCChhHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCh
Q 007400 26 SLISKGQLSEAISSLDLLAQRG-IRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSD 104 (605)
Q Consensus 26 ~~~~~g~~~~a~~~~~~~~~~g-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 104 (605)
.+.+.|++++|+++|+.|...+ +.|+..+|+.++.+|.+.++.+.+.+++..+.+.|..++.. +|+.++.+|++.|++
T Consensus 96 ~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~-~~n~Li~~y~k~g~~ 174 (697)
T PLN03081 96 KLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQY-MMNRVLLMHVKCGML 174 (697)
T ss_pred HHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchH-HHHHHHHHHhcCCCH
Confidence 6778899999999999998765 78999999999999999999999999999999999988877 999999999999999
Q ss_pred hHHHHHhccCCCCCchHHHHHHHHHHccCChHHHHHHHhhcC----CCCceeHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 007400 105 VDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMA----ERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFS 180 (605)
Q Consensus 105 ~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 180 (605)
++|.++|++|.+||..+|+++|.+|++.|++++|.++|++|. .||..+|+.++.++++.|..+.+.+++..+.+.|
T Consensus 175 ~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g 254 (697)
T PLN03081 175 IDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTG 254 (697)
T ss_pred HHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999999996 4788888888888888888888888888888888
Q ss_pred CCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhcC----CCCcchHHH
Q 007400 181 ISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETD----ARDVLTWTT 256 (605)
Q Consensus 181 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~----~~~~~~~~~ 256 (605)
+.||..+|+.++.+|++.|++++|.++|+.|. .+|..+|+.++.+|++.|+.++|.++|++|. .+|..+|+.
T Consensus 255 ~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ 330 (697)
T PLN03081 255 VVGDTFVSCALIDMYSKCGDIEDARCVFDGMP----EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSI 330 (697)
T ss_pred CCccceeHHHHHHHHHHCCCHHHHHHHHHhCC----CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 88888888888888888888888888888773 4678888888888888888888888888884 357788888
Q ss_pred HHHHHHhcCChHHHHHHHhhCCC----CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhcccc
Q 007400 257 MVSGYAKLGDMESASKLFNEMPE----KNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVS 332 (605)
Q Consensus 257 li~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~ 332 (605)
++.+|++.|++++|.+++..|.+ +|..+|++|+.+|++.|++++|.++|++|. .||..+|+.+|.+|++.|+
T Consensus 331 ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~----~~d~~t~n~lI~~y~~~G~ 406 (697)
T PLN03081 331 MIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP----RKNLISWNALIAGYGNHGR 406 (697)
T ss_pred HHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC----CCCeeeHHHHHHHHHHcCC
Confidence 88888888888888888887763 577888888888888888888888888876 4678888888888888888
Q ss_pred hHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCC----CCCcchHHHHHHHHHHcCCHHHHHHHHH
Q 007400 333 LKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDN----KENSMLWNTMISALTQHGYDEQAIRLFH 408 (605)
Q Consensus 333 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 408 (605)
.++|.++|++|.+.|+.||..+|+.++.+|.+.|..++|.++|+.|.. .|+..+|+.++.+|++.|++++|.++++
T Consensus 407 ~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~ 486 (697)
T PLN03081 407 GTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIR 486 (697)
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHH
Confidence 888888888888888888888888888888888888888888888753 3778888888888888888888888877
Q ss_pred HHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHchHhhCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHhCC
Q 007400 409 DMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPN-QEHHACLIELLAQAGCSDQLMNQLEKMP 482 (605)
Q Consensus 409 ~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 482 (605)
+| ++.|+..+|+.++.+|...|+++.|..+++++. ++.|+ ..+|..|+..|.+.|++++|.+++++|.
T Consensus 487 ~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~---~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~ 555 (697)
T PLN03081 487 RA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLY---GMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLK 555 (697)
T ss_pred HC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHh---CCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 65 467888888888888888888888888888876 66665 6688888888888888888888888773
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=3.4e-33 Score=309.34 Aligned_cols=515 Identities=12% Similarity=0.080 Sum_probs=349.1
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHhhhcCChhHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCChh
Q 007400 26 SLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDV 105 (605)
Q Consensus 26 ~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 105 (605)
.+.+.|++++|...++.+.+.. +.+...+..+...+.+.|++++|.+.++.+....+.. ...+..+...+...|+++
T Consensus 338 ~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~ 414 (899)
T TIGR02917 338 IQLRLGRVDEAIATLSPALGLD-PDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPEN--AAARTQLGISKLSQGDPS 414 (899)
T ss_pred HHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC--HHHHHHHHHHHHhCCChH
Confidence 5567788888888888877654 4456677777777888888888888888877665332 225666777777788888
Q ss_pred HHHHHhccCCCC---CchHHHHHHHHHHccCChHHHHHHHhhcCC---CCceeHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 007400 106 DARKVFDKIPVK---NLFSYNNMLSGYANLGMMKHARNLFDNMAE---RDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRF 179 (605)
Q Consensus 106 ~a~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 179 (605)
+|...++.+.+. .......++..+.+.|++++|..+++.+.. .+..+|..+...+...|++++|.+.|+++.+.
T Consensus 415 ~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 494 (899)
T TIGR02917 415 EAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSI 494 (899)
T ss_pred HHHHHHHHHHhhCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhh
Confidence 888877776532 234555666777777777777777777653 34556777777777777777777777777663
Q ss_pred CCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhcCCC---CcchHHH
Q 007400 180 SISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDAR---DVLTWTT 256 (605)
Q Consensus 180 ~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~ 256 (605)
. +.+...+..+...+...|++++|...++.+....+ .+..++..+...+.+.|+.++|...++++... +...+..
T Consensus 495 ~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 572 (899)
T TIGR02917 495 E-PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDP-KNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALA 572 (899)
T ss_pred C-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHH
Confidence 2 22344566666777777777777777777776643 35666777777777777777777777766443 3455666
Q ss_pred HHHHHHhcCChHHHHHHHhhCCC---CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhcccch
Q 007400 257 MVSGYAKLGDMESASKLFNEMPE---KNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSL 333 (605)
Q Consensus 257 li~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~ 333 (605)
++..+...|++++|..+++.+.. .+...|..++..+...|++++|+..|+++.+.. +.+...+..+..++...|++
T Consensus 573 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~ 651 (899)
T TIGR02917 573 LAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNY 651 (899)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCH
Confidence 67777777777777777776653 355667777777777777777777777776543 33455566666777777777
Q ss_pred HHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCCC--CCcchHHHHHHHHHHcCCHHHHHHHHHHHH
Q 007400 334 KHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNK--ENSMLWNTMISALTQHGYDEQAIRLFHDMV 411 (605)
Q Consensus 334 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 411 (605)
++|..+++.+.+.. +.+...+..++..+...|++++|.++++.+... .+...+..+...+...|++++|...|+++.
T Consensus 652 ~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~ 730 (899)
T TIGR02917 652 AKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKAL 730 (899)
T ss_pred HHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 77777777776654 445666677777777777777777777766532 244556666667777777777777777776
Q ss_pred HCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHchHhhCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHH
Q 007400 412 RSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMP--YEHDSYL 489 (605)
Q Consensus 412 ~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~ 489 (605)
.. .|+..++..++.++...|++++|...++++... .+.+...+..++..|...|++++|.+.|+++. .++++.+
T Consensus 731 ~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 806 (899)
T TIGR02917 731 KR--APSSQNAIKLHRALLASGNTAEAVKTLEAWLKT--HPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVV 806 (899)
T ss_pred hh--CCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHH
Confidence 63 455556666667777777777777777776622 23345666667777777777777777776652 3345666
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCCC
Q 007400 490 WNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQF 552 (605)
Q Consensus 490 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 552 (605)
+..++..+...|+ ++|+..++++++..|+++..+..++.++...|++++|..+++++.+.+.
T Consensus 807 ~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~ 868 (899)
T TIGR02917 807 LNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAP 868 (899)
T ss_pred HHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 6666667766666 6677777777777776766666777777777777777777777666543
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=1.2e-32 Score=304.87 Aligned_cols=513 Identities=13% Similarity=0.081 Sum_probs=310.8
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHhhhcCChhHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCChh
Q 007400 26 SLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDV 105 (605)
Q Consensus 26 ~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 105 (605)
.+...|++++|...|+.+.+.. +.+...+..+...+...|++++|...+..+....+..+. .+..+...+.+.|+++
T Consensus 304 ~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~ 380 (899)
T TIGR02917 304 SEYQLGNLEQAYQYLNQILKYA-PNSHQARRLLASIQLRLGRVDEAIATLSPALGLDPDDPA--ALSLLGEAYLALGDFE 380 (899)
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHH--HHHHHHHHHHHCCCHH
Confidence 4445566666666666666543 334445555556666666666666666666655433222 4556666666666666
Q ss_pred HHHHHhccCCC---CCchHHHHHHHHHHccCChHHHHHHHhhcCCC---CceeHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 007400 106 DARKVFDKIPV---KNLFSYNNMLSGYANLGMMKHARNLFDNMAER---DVVSWNTMIIGYAKSGAVEEGLKFYKVLRRF 179 (605)
Q Consensus 106 ~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 179 (605)
+|...|+++.+ .+...+..+...+...|++++|.+.|+.+.+. +......++..+.+.|++++|.++++.+...
T Consensus 381 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 460 (899)
T TIGR02917 381 KAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKK 460 (899)
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 66666666543 23345555666666666666666666665431 2234445556666666666666666666552
Q ss_pred CCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhcCCC---CcchHHH
Q 007400 180 SISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDAR---DVLTWTT 256 (605)
Q Consensus 180 ~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~ 256 (605)
.+++..++..+...+...|++++|...++++.+..+ .+...+..+...+...|++++|.+.|+++... +..++..
T Consensus 461 -~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 538 (899)
T TIGR02917 461 -QPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEP-DFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILA 538 (899)
T ss_pred -CCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHH
Confidence 234555666666666666666666666666665432 24445555666666666666666666665432 4455566
Q ss_pred HHHHHHhcCChHHHHHHHhhCCC---CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhcccch
Q 007400 257 MVSGYAKLGDMESASKLFNEMPE---KNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSL 333 (605)
Q Consensus 257 li~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~ 333 (605)
+...+.+.|+.++|...++++.. .+...+..++..+...|++++|+.+++.+.+.. +.+...+..+..++...|++
T Consensus 539 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~ 617 (899)
T TIGR02917 539 LAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDL 617 (899)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCH
Confidence 66666666666666666666543 234455566666666666666666666665532 44555666666666666666
Q ss_pred HHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCC--CCCcchHHHHHHHHHHcCCHHHHHHHHHHHH
Q 007400 334 KHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDN--KENSMLWNTMISALTQHGYDEQAIRLFHDMV 411 (605)
Q Consensus 334 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 411 (605)
++|...++.+.+.. +.+...+..+..++.+.|++++|...|+.+.. +.+..++..++..+...|++++|..+++.+.
T Consensus 618 ~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 696 (899)
T TIGR02917 618 NKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQ 696 (899)
T ss_pred HHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 66666666666554 34455566666666666666666666665432 1244566666666666666666666666666
Q ss_pred HCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHchHhhCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHH
Q 007400 412 RSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMP--YEHDSYL 489 (605)
Q Consensus 412 ~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~ 489 (605)
+.+ +++...+..+...+...|++++|...|+.+. ...|+..++..++.++.+.|++++|.+.++++. .+.+..+
T Consensus 697 ~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~ 772 (899)
T TIGR02917 697 KQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKAL---KRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVL 772 (899)
T ss_pred hhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHH---hhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHH
Confidence 643 2344556666666666666666666666666 234444555666666666666666666666541 2345556
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 007400 490 WNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINER 550 (605)
Q Consensus 490 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 550 (605)
+..++..|...|++++|...|+++++..|+++.++..++.++...|+ ++|+..++++.+.
T Consensus 773 ~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~ 832 (899)
T TIGR02917 773 RTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKL 832 (899)
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhh
Confidence 66666666666666666666666666666666666666666666666 6666666666543
No 9
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.97 E-value=2.2e-25 Score=246.76 Aligned_cols=529 Identities=12% Similarity=0.047 Sum_probs=321.7
Q ss_pred CCChHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHhhhcCChhHHHHHHHHHHHhCCCCCchhh---
Q 007400 14 NLPNNCLIQSFLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFL--- 90 (605)
Q Consensus 14 ~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--- 90 (605)
+.+-..++....-....++.+.|.+.++++.... +.++..+...+..+...|+.++|.+.++.+.+..+..+....
T Consensus 25 ~~~~~~Ll~q~~~~~~~~~~d~a~~~l~kl~~~~-p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~ 103 (1157)
T PRK11447 25 PTAQQQLLEQVRLGEATHREDLVRQSLYRLELID-PNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSNAYRSSRT 103 (1157)
T ss_pred CCHHHHHHHHHHHHHhhCChHHHHHHHHHHHccC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCChHHHHHHH
Confidence 3345556766667778899999999999998864 456788888889999999999999999999988866544311
Q ss_pred -----------HHHHHHHHHhcCChhHHHHHhccCCCCCchHH----HHHHHHHHccCChHHHHHHHhhcCC--C-Ccee
Q 007400 91 -----------SNHLISMYFKCGSDVDARKVFDKIPVKNLFSY----NNMLSGYANLGMMKHARNLFDNMAE--R-DVVS 152 (605)
Q Consensus 91 -----------~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~li~~~~~~~~~~~A~~~~~~~~~--~-~~~~ 152 (605)
...+...+...|++++|...|+++.+.++... ..........|+.++|++.|+++.+ | +...
T Consensus 104 ~~~~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~~~~~ 183 (1157)
T PRK11447 104 TMLLSTPEGRQALQQARLLATTGRTEEALASYDKLFNGAPPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPGNTGL 183 (1157)
T ss_pred HHHhcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCCCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCCCHHH
Confidence 12334467888999999999999875322111 1111222346899999999999875 3 4556
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCC----------------CCChh---hHH------------------------
Q 007400 153 WNTMIIGYAKSGAVEEGLKFYKVLRRFSI----------------SCNEF---SFA------------------------ 189 (605)
Q Consensus 153 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~----------------~p~~~---~~~------------------------ 189 (605)
+..+...+...|++++|++.++++.+... .++.. .+.
T Consensus 184 ~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~ 263 (1157)
T PRK11447 184 RNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQK 263 (1157)
T ss_pred HHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHH
Confidence 77888889999999999999998754321 00000 010
Q ss_pred ----------HHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhcCCCCcc-----hH
Q 007400 190 ----------GILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVL-----TW 254 (605)
Q Consensus 190 ----------~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-----~~ 254 (605)
.....+...|++++|...+++.++..+ .+..++..+..+|.+.|++++|+..|++..+.++. .|
T Consensus 264 ~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~~P-~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~ 342 (1157)
T PRK11447 264 QLADPAFRARAQGLAAVDSGQGGKAIPELQQAVRANP-KDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKW 342 (1157)
T ss_pred hccCcchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHH
Confidence 112234456677777777777766543 25566666777777777777777777666543211 11
Q ss_pred H------------HHHHHHHhcCChHHHHHHHhhCCC---CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChHH
Q 007400 255 T------------TMVSGYAKLGDMESASKLFNEMPE---KNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHT 319 (605)
Q Consensus 255 ~------------~li~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~ 319 (605)
. .....+.+.|++++|+..|+++.+ .+...+..+...+...|++++|++.|+++.+.. +.+...
T Consensus 343 ~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a 421 (1157)
T PRK11447 343 ESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNA 421 (1157)
T ss_pred HHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHH
Confidence 1 112345566777777777776654 244456666677777777777777777766642 222334
Q ss_pred HHHHHHHHhcccchHHHHHHHHHHHHcCCC--------CChhHHHHHHHHHHhcCChHHHHHHHHhcCC-CC-CcchHHH
Q 007400 320 FSSCLCACASIVSLKHGKQVHGFLIRTNFR--------SNTIVMSSLIDMYSKCGCLNDGRQVFDLTDN-KE-NSMLWNT 389 (605)
Q Consensus 320 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~ 389 (605)
+..+...+. .++.++|..+++.+...... .....+..+...+...|++++|++.|++... .| +...+..
T Consensus 422 ~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~ 500 (1157)
T PRK11447 422 VRGLANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYR 500 (1157)
T ss_pred HHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 444444443 34566666666554322100 0112344456667778888888888886542 23 4556777
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHchHhhCCC----------------
Q 007400 390 MISALTQHGYDEQAIRLFHDMVRSSVKP-DKITLAVILNACTHSGLVQEGLTYFESMTHDLGII---------------- 452 (605)
Q Consensus 390 l~~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~---------------- 452 (605)
+...|.+.|++++|...++++.+. .| +...+..+...+...++.++|...++.+... ...
T Consensus 501 LA~~~~~~G~~~~A~~~l~~al~~--~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~-~~~~~~~~l~~~l~~~~~l 577 (1157)
T PRK11447 501 LAQDLRQAGQRSQADALMRRLAQQ--KPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRA-QWNSNIQELAQRLQSDQVL 577 (1157)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCch-hcChhHHHHHHHHhhhHHH
Confidence 778888888888888888888773 45 3444555555566778888888888776411 111
Q ss_pred -----------------------CCHHHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHH
Q 007400 453 -----------------------PNQEHHACLIELLAQAGCSDQLMNQLEKMP--YEHDSYLWNALHGVCRIHGNIDMGR 507 (605)
Q Consensus 453 -----------------------p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~ 507 (605)
++...+..+...+.+.|++++|++.|++.. .+.+...+..++.++...|++++|+
T Consensus 578 ~~a~~l~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~ 657 (1157)
T PRK11447 578 ETANRLRDSGKEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAAR 657 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 112233344444444455555554444431 1223444444555555555555555
Q ss_pred HHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 007400 508 KVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINE 549 (605)
Q Consensus 508 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 549 (605)
+.++++++..|++...+..++.++...|++++|.++++.+..
T Consensus 658 ~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~ 699 (1157)
T PRK11447 658 AQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIP 699 (1157)
T ss_pred HHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhh
Confidence 555555555554444555555555555555555555554443
No 10
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.97 E-value=6.6e-25 Score=243.01 Aligned_cols=508 Identities=11% Similarity=0.050 Sum_probs=382.9
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCChhh-HHHHHHHhhhcCChhHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCh
Q 007400 26 SLISKGQLSEAISSLDLLAQRGIRLPAET-LAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSD 104 (605)
Q Consensus 26 ~~~~~g~~~~a~~~~~~~~~~g~~~~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 104 (605)
.+...|++++|+..|+.+.+.+ +|+... ...+.......|+.++|.+.++.+++..+..+. .+..+...+...|+.
T Consensus 121 ll~~~g~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~~~~--~~~~LA~ll~~~g~~ 197 (1157)
T PRK11447 121 LLATTGRTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPGNTG--LRNTLALLLFSSGRR 197 (1157)
T ss_pred HHHhCCCHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCCCHH--HHHHHHHHHHccCCH
Confidence 4667899999999999998764 444321 111222233468999999999999998765443 677889999999999
Q ss_pred hHHHHHhccCCCCCc-----------------------hHHH----------------------------------HHHH
Q 007400 105 VDARKVFDKIPVKNL-----------------------FSYN----------------------------------NMLS 127 (605)
Q Consensus 105 ~~a~~~~~~~~~~~~-----------------------~~~~----------------------------------~li~ 127 (605)
++|+..++++..... ..+. ....
T Consensus 198 ~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~ 277 (1157)
T PRK11447 198 DEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGL 277 (1157)
T ss_pred HHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHH
Confidence 999999988642110 0000 1123
Q ss_pred HHHccCChHHHHHHHhhcCC--C-CceeHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-ChhhH------------HHH
Q 007400 128 GYANLGMMKHARNLFDNMAE--R-DVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISC-NEFSF------------AGI 191 (605)
Q Consensus 128 ~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~------------~~l 191 (605)
.+...|++++|+..|++..+ | +...+..+..++.+.|++++|+..|++..+..... +...+ ...
T Consensus 278 ~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~ 357 (1157)
T PRK11447 278 AAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQ 357 (1157)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHH
Confidence 45667888999999988764 3 56778888888999999999999999887743221 11111 122
Q ss_pred HHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhcCCC---CcchHHHHHHHHHhcCChH
Q 007400 192 LTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDAR---DVLTWTTMVSGYAKLGDME 268 (605)
Q Consensus 192 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~~~~~ 268 (605)
...+.+.|++++|...++++++..+ .+...+..+..++...|++++|++.|++.... +...+..+...+. .++.+
T Consensus 358 g~~~~~~g~~~eA~~~~~~Al~~~P-~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~-~~~~~ 435 (1157)
T PRK11447 358 GDAALKANNLAQAERLYQQARQVDN-TDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYR-QQSPE 435 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-hcCHH
Confidence 3456688899999999999888754 35667777888999999999999999887754 3445556666664 46788
Q ss_pred HHHHHHhhCCCCC------------hhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhcccchHHH
Q 007400 269 SASKLFNEMPEKN------------PVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHG 336 (605)
Q Consensus 269 ~A~~~~~~~~~~~------------~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a 336 (605)
+|..+++.+.... ...+..+...+...|++++|++.|++..+.. +-+...+..+...+...|++++|
T Consensus 436 ~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~~A 514 (1157)
T PRK11447 436 KALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRSQA 514 (1157)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHH
Confidence 8888887765321 2235556778889999999999999998853 23455667788889999999999
Q ss_pred HHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCCCC---Cc---------chHHHHHHHHHHcCCHHHHH
Q 007400 337 KQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKE---NS---------MLWNTMISALTQHGYDEQAI 404 (605)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~---------~~~~~l~~~~~~~g~~~~a~ 404 (605)
...++.+.+.. +.+...+..+...+...++.++|...++.+.... +. ..+..++..+...|+.++|.
T Consensus 515 ~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~ 593 (1157)
T PRK11447 515 DALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAE 593 (1157)
T ss_pred HHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHH
Confidence 99999998765 4455556666667788999999999999876431 11 11234566788899999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHchHhhCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHhCC-
Q 007400 405 RLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPN-QEHHACLIELLAQAGCSDQLMNQLEKMP- 482 (605)
Q Consensus 405 ~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~- 482 (605)
.+++. .+++...+..+...+...|++++|+..|+++. ...|+ ...+..++.+|...|++++|++.+++..
T Consensus 594 ~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al---~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~ 665 (1157)
T PRK11447 594 ALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVL---TREPGNADARLGLIEVDIAQGDLAAARAQLAKLPA 665 (1157)
T ss_pred HHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHH---HhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 99871 24456678889999999999999999999998 34555 7889999999999999999999999864
Q ss_pred CC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC------chHHHHHHHHHhcCCchHHHHHHHHHH
Q 007400 483 YE-HDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSS------ATHGLLSSIYSALGKGRLVEKVRQLIN 548 (605)
Q Consensus 483 ~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~------~~~~~l~~~~~~~g~~~~a~~~~~~~~ 548 (605)
.. .+...+..++.++...|++++|.+++++++...|+++ ..+..++.++...|++++|+..|+...
T Consensus 666 ~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al 738 (1157)
T PRK11447 666 TANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAM 738 (1157)
T ss_pred cCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 23 4566777888899999999999999999999876544 356678999999999999999998885
No 11
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.95 E-value=1.4e-22 Score=214.12 Aligned_cols=503 Identities=10% Similarity=0.016 Sum_probs=360.1
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHhhhcCChhHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCChh
Q 007400 26 SLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDV 105 (605)
Q Consensus 26 ~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 105 (605)
.+...|++++|++.|+...+.. +-+..++..+.+++.+.|+.++|+...++.++..+ .+...+..+ ..+ ++.+
T Consensus 53 ~~~~~Gd~~~A~~~l~~Al~~d-P~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP--~n~~~~~~L-a~i---~~~~ 125 (987)
T PRK09782 53 KAQKNNDEATAIREFEYIHQQV-PDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHP--GDARLERSL-AAI---PVEV 125 (987)
T ss_pred HHHhCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc--ccHHHHHHH-HHh---ccCh
Confidence 4445699999999999999876 44578888899999999999999999999998865 333133333 222 8999
Q ss_pred HHHHHhccCCC--C-CchHHHHHHHH--------HHccCChHHHHHHHhhcCCCC--ceeHHHH-HHHHHhcCChHHHHH
Q 007400 106 DARKVFDKIPV--K-NLFSYNNMLSG--------YANLGMMKHARNLFDNMAERD--VVSWNTM-IIGYAKSGAVEEGLK 171 (605)
Q Consensus 106 ~a~~~~~~~~~--~-~~~~~~~li~~--------~~~~~~~~~A~~~~~~~~~~~--~~~~~~l-i~~~~~~~~~~~a~~ 171 (605)
+|..+++++.. | +..++..+... |.+.+...++++ .+...++ ....... ...|.+.|++++|++
T Consensus 126 kA~~~ye~l~~~~P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~--lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~ 203 (987)
T PRK09782 126 KSVTTVEELLAQQKACDAVPTLRCRSEVGQNALRLAQLPVARAQLN--DATFAASPEGKTLRTDLLQRAIYLKQWSQADT 203 (987)
T ss_pred hHHHHHHHHHHhCCCChhHHHHHHHHhhccchhhhhhHHHHHHHHH--HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHH
Confidence 99999999974 3 34555555555 666666666665 3333343 4434444 889999999999999
Q ss_pred HHHHHHhCCCCCChhhHHHHHHHHhc-cCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhcCCC-
Q 007400 172 FYKVLRRFSISCNEFSFAGILTICVK-LEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDAR- 249 (605)
Q Consensus 172 ~~~~m~~~~~~p~~~~~~~ll~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~- 249 (605)
+++++.+.+. .+..-...+..++.. .++ +.+..+++. .++.+...+..++..|.+.|+.++|.++++++...
T Consensus 204 lL~~L~k~~p-l~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~ 277 (987)
T PRK09782 204 LYNEARQQNT-LSAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKARLQHYLIENKPLF 277 (987)
T ss_pred HHHHHHhcCC-CCHHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccc
Confidence 9999999764 334445666667776 366 777777543 34467888999999999999999999999887642
Q ss_pred ----CcchHHHH------------------------------HHH-----------------------------------
Q 007400 250 ----DVLTWTTM------------------------------VSG----------------------------------- 260 (605)
Q Consensus 250 ----~~~~~~~l------------------------------i~~----------------------------------- 260 (605)
...+|--. +..
T Consensus 278 ~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 357 (987)
T PRK09782 278 TTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRN 357 (987)
T ss_pred cCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCc
Confidence 11111111 111
Q ss_pred ----------------------------HHhcCChHHHHHHHhhCCC-C-----ChhhHHHHHHHHHhCCC---hHHHHH
Q 007400 261 ----------------------------YAKLGDMESASKLFNEMPE-K-----NPVSWTTLIAGYTRNGL---GQKALE 303 (605)
Q Consensus 261 ----------------------------~~~~~~~~~A~~~~~~~~~-~-----~~~~~~~l~~~~~~~g~---~~~a~~ 303 (605)
..+.|+.++|.++|+.... + +....+.++..|.+.+. ..+++.
T Consensus 358 ~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 437 (987)
T PRK09782 358 KAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAI 437 (987)
T ss_pred hhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHH
Confidence 3344555566665555443 1 12223345555555544 222222
Q ss_pred H----------------------HHHHHH-CCC-CC--ChHHHHHHHHHHhcccchHHHHHHHHHHHHcCCCCChhHHHH
Q 007400 304 L----------------------FTRMMI-LRI-RP--NQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSS 357 (605)
Q Consensus 304 ~----------------------~~~m~~-~g~-~p--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 357 (605)
+ +..... .+. ++ +...+..+..++.. ++.++|...+....... |+......
T Consensus 438 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~~~~L~ 514 (987)
T PRK09782 438 LSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--PDAWQHRA 514 (987)
T ss_pred hccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--CchHHHHH
Confidence 2 111111 111 22 34455555555554 67778888777777654 44433444
Q ss_pred HHHHHHhcCChHHHHHHHHhcCCC-CCcchHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCcH
Q 007400 358 LIDMYSKCGCLNDGRQVFDLTDNK-ENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDK-ITLAVILNACTHSGLV 435 (605)
Q Consensus 358 l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~g~~ 435 (605)
+...+...|++++|...|+.+... |+...+..+...+.+.|+.++|...+++.++. .|+. ..+..+.......|++
T Consensus 515 lA~al~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l--~P~~~~l~~~La~~l~~~Gr~ 592 (987)
T PRK09782 515 VAYQAYQVEDYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQR--GLGDNALYWWLHAQRYIPGQP 592 (987)
T ss_pred HHHHHHHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHhCCCH
Confidence 455567899999999999976643 45556777788889999999999999999885 3543 3444445555677999
Q ss_pred HHHHHHHHHchHhhCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 007400 436 QEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMP--YEHDSYLWNALHGVCRIHGNIDMGRKVVDQL 513 (605)
Q Consensus 436 ~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 513 (605)
++|...+++.. ...|+...+..+..++.+.|++++|+..+++.. .+.+...+..++.++...|++++|++.|+++
T Consensus 593 ~eAl~~~~~AL---~l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~A 669 (987)
T PRK09782 593 ELALNDLTRSL---NIAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERA 669 (987)
T ss_pred HHHHHHHHHHH---HhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 99999999998 567788899999999999999999999999862 3456778888999999999999999999999
Q ss_pred HhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 007400 514 IDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQ 551 (605)
Q Consensus 514 ~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 551 (605)
++..|+++..+..++.++...|++++|+..+++..+..
T Consensus 670 L~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~ 707 (987)
T PRK09782 670 HKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDI 707 (987)
T ss_pred HHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999997654
No 12
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.95 E-value=4.1e-24 Score=200.40 Aligned_cols=436 Identities=11% Similarity=0.133 Sum_probs=340.9
Q ss_pred HHHHHHHHhcCChhHHHHHhccCCCCCc---hHHHHHHHHHHccCChHHHHHHHhhcCC---CCceeHHHHHHHHHhcCC
Q 007400 92 NHLISMYFKCGSDVDARKVFDKIPVKNL---FSYNNMLSGYANLGMMKHARNLFDNMAE---RDVVSWNTMIIGYAKSGA 165 (605)
Q Consensus 92 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~---~~~~~li~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~ 165 (605)
..|.+-.-+.|++++|++.-...-+.|+ ...-.+-..+.+..+++....--....+ .-..+|+.+...+-..|+
T Consensus 52 l~lah~~yq~gd~~~a~~h~nmv~~~d~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~kerg~ 131 (966)
T KOG4626|consen 52 LELAHRLYQGGDYKQAEKHCNMVGQEDPTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLANILKERGQ 131 (966)
T ss_pred HHHHHHHHhccCHHHHHHHHhHhhccCCCcccceeeehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHHHHHHhch
Confidence 3455555566777777665544433221 2222233444555555544333222222 234578888888888888
Q ss_pred hHHHHHHHHHHHhCCCCC-ChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhH-HHHHHHHHHhcCChHHHHHHH
Q 007400 166 VEEGLKFYKVLRRFSISC-NEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVI-SSSIVDAYAKCGELSDARRLF 243 (605)
Q Consensus 166 ~~~a~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~a~~~~ 243 (605)
+++|+.+|+.+.+ ++| ....|..+..++...|+.+.|.+.|.+.++.. |+... ...+.......|++.+|...|
T Consensus 132 ~~~al~~y~~aie--l~p~fida~inla~al~~~~~~~~a~~~~~~alqln--P~l~ca~s~lgnLlka~Grl~ea~~cY 207 (966)
T KOG4626|consen 132 LQDALALYRAAIE--LKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLN--PDLYCARSDLGNLLKAEGRLEEAKACY 207 (966)
T ss_pred HHHHHHHHHHHHh--cCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcC--cchhhhhcchhHHHHhhcccchhHHHH
Confidence 8888888888877 334 55678888888888888888888888877654 44333 233445555678888888888
Q ss_pred hhcCCCC---cchHHHHHHHHHhcCChHHHHHHHhhCCCCC---hhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-
Q 007400 244 DETDARD---VLTWTTMVSGYAKLGDMESASKLFNEMPEKN---PVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPN- 316 (605)
Q Consensus 244 ~~~~~~~---~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~- 316 (605)
.+....+ ...|+.|...+-.+|+...|+..|++...-| ..+|-.|...|...+.++.|+..|.+.... .|+
T Consensus 208 lkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l--rpn~ 285 (966)
T KOG4626|consen 208 LKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNL--RPNH 285 (966)
T ss_pred HHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhc--CCcc
Confidence 7766543 3678888888888999999999999887644 347888999999999999999999988774 454
Q ss_pred hHHHHHHHHHHhcccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCC--CCCcchHHHHHHHH
Q 007400 317 QHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDN--KENSMLWNTMISAL 394 (605)
Q Consensus 317 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~ 394 (605)
...+..+...|..+|.++.|...+++.++.. +.-+..|+.|..++...|+..+|...|..... +....+.+.|...+
T Consensus 286 A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~ 364 (966)
T KOG4626|consen 286 AVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIY 364 (966)
T ss_pred hhhccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHH
Confidence 4567777788889999999999999999876 55678999999999999999999999987542 22566789999999
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHchHhhCCCCC-HHHHHHHHHHHHhcCChH
Q 007400 395 TQHGYDEQAIRLFHDMVRSSVKPDK-ITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPN-QEHHACLIELLAQAGCSD 472 (605)
Q Consensus 395 ~~~g~~~~a~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~ 472 (605)
...|.+++|..+|....+ +.|.. ..++.|...|-+.|++++|+..|+++. .+.|+ .+.++.+...|...|+.+
T Consensus 365 ~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykeal---rI~P~fAda~~NmGnt~ke~g~v~ 439 (966)
T KOG4626|consen 365 REQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEAL---RIKPTFADALSNMGNTYKEMGDVS 439 (966)
T ss_pred HHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHH---hcCchHHHHHHhcchHHHHhhhHH
Confidence 999999999999999998 78875 489999999999999999999999998 88999 789999999999999999
Q ss_pred HHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchH
Q 007400 473 QLMNQLEKM-PYEHD-SYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRL 539 (605)
Q Consensus 473 ~A~~~~~~~-~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 539 (605)
.|.+.+.+. ...|. ....+.|+..|...|++.+|+..|+.++++.||.+.++-.++.++--..+|.+
T Consensus 440 ~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~vcdw~D 508 (966)
T KOG4626|consen 440 AAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQIVCDWTD 508 (966)
T ss_pred HHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHHHhcccc
Confidence 999999886 44554 66888999999999999999999999999999999999999988877777766
No 13
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.93 E-value=1.7e-20 Score=198.57 Aligned_cols=317 Identities=12% Similarity=0.047 Sum_probs=246.2
Q ss_pred HHHHHHhcCChHHHHHHHhhcCCC------CcchHHHHHHHHHhcCC---hHHHHHH-----------------------
Q 007400 226 IVDAYAKCGELSDARRLFDETDAR------DVLTWTTMVSGYAKLGD---MESASKL----------------------- 273 (605)
Q Consensus 226 l~~~~~~~g~~~~a~~~~~~~~~~------~~~~~~~li~~~~~~~~---~~~A~~~----------------------- 273 (605)
+.-.....|+.++|.++|+..... +......++..|.+.+. ...+..+
T Consensus 382 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 461 (987)
T PRK09782 382 LTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNC 461 (987)
T ss_pred HHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhH
Confidence 334456678899999999887762 12234466777777766 2223222
Q ss_pred --HhhCCC---C--ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhcccchHHHHHHHHHHHHc
Q 007400 274 --FNEMPE---K--NPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRT 346 (605)
Q Consensus 274 --~~~~~~---~--~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 346 (605)
+..... + +...|..+..++.. +++.+|+..+.+.... .|+......+...+...|++++|...++.+...
T Consensus 462 ~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~ 538 (987)
T PRK09782 462 PAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH 538 (987)
T ss_pred HHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc
Confidence 111111 2 45677778877776 8999999988887764 467655545556667899999999999997654
Q ss_pred CCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCCC-CCc-chHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 007400 347 NFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNK-ENS-MLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAV 424 (605)
Q Consensus 347 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~-~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ 424 (605)
+|+...+..+...+.+.|++++|...|+..... |+. ..+..+.......|++++|...+++.++ +.|+...+..
T Consensus 539 --~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~--l~P~~~a~~~ 614 (987)
T PRK09782 539 --DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLN--IAPSANAYVA 614 (987)
T ss_pred --CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHH--hCCCHHHHHH
Confidence 344455667788899999999999999876643 222 2233333344456999999999999998 5788889999
Q ss_pred HHHHHhccCcHHHHHHHHHHchHhhCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcC
Q 007400 425 ILNACTHSGLVQEGLTYFESMTHDLGIIPN-QEHHACLIELLAQAGCSDQLMNQLEKMP--YEHDSYLWNALHGVCRIHG 501 (605)
Q Consensus 425 l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g 501 (605)
+..++.+.|++++|...++++. ...|+ ...+..+..++...|++++|++.+++.. .+.+...+..++.++...|
T Consensus 615 LA~~l~~lG~~deA~~~l~~AL---~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lG 691 (987)
T PRK09782 615 RATIYRQRHNVPAAVSDLRAAL---ELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLD 691 (987)
T ss_pred HHHHHHHCCCHHHHHHHHHHHH---HhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC
Confidence 9999999999999999999998 55676 7788999999999999999999999862 3456888999999999999
Q ss_pred CHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCCC
Q 007400 502 NIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQF 552 (605)
Q Consensus 502 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 552 (605)
++++|+..|++++++.|++..+....+++..+..+++.|.+.++......+
T Consensus 692 d~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~ 742 (987)
T PRK09782 692 DMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFSF 742 (987)
T ss_pred CHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcCc
Confidence 999999999999999999999999999999999999999998887755443
No 14
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.93 E-value=1.6e-22 Score=189.90 Aligned_cols=421 Identities=13% Similarity=0.131 Sum_probs=350.1
Q ss_pred HHHHHHHHHccCChHHHHHHHhhcCCCCc---eeHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcc
Q 007400 122 YNNMLSGYANLGMMKHARNLFDNMAERDV---VSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKL 198 (605)
Q Consensus 122 ~~~li~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 198 (605)
...+..-..+.|++.+|++.-...-..|. ...-.+-..+.+..+.+....--....+ ..+.-..+|..+.+.+...
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r-~~~q~ae~ysn~aN~~ker 129 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQEDPTNTERLLLLSAIFFQGSRLDKSSAGSLLAIR-KNPQGAEAYSNLANILKER 129 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccCCCcccceeeehhhhhcccchhhhhhhhhhhhh-ccchHHHHHHHHHHHHHHh
Confidence 44566777889999999988776654322 2222223445555566665544333333 2334667999999999999
Q ss_pred CChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhcCCCCcch---HHHHHHHHHhcCChHHHHHHHh
Q 007400 199 EELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLT---WTTMVSGYAKLGDMESASKLFN 275 (605)
Q Consensus 199 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~li~~~~~~~~~~~A~~~~~ 275 (605)
|++++|...++.+++..+. ....|..+..++...|+.+.|.+.|.+..+-|+.. .+.+...+...|++++|...+.
T Consensus 130 g~~~~al~~y~~aiel~p~-fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~~cYl 208 (966)
T KOG4626|consen 130 GQLQDALALYRAAIELKPK-FIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEAKACYL 208 (966)
T ss_pred chHHHHHHHHHHHHhcCch-hhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcccchhHHHHH
Confidence 9999999999999987644 67889999999999999999999999888766533 3445566777899999999998
Q ss_pred hCCCCC---hhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCh-HHHHHHHHHHhcccchHHHHHHHHHHHHcCCCCC
Q 007400 276 EMPEKN---PVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQ-HTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSN 351 (605)
Q Consensus 276 ~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 351 (605)
+..+.+ .++|+.|...+..+|+...|+..|++..+. .|+. ..|..|...|...+.++.|...+.++.... +..
T Consensus 209 kAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr-pn~ 285 (966)
T KOG4626|consen 209 KAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLR-PNH 285 (966)
T ss_pred HHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcC-Ccc
Confidence 876532 457999999999999999999999999874 5654 478888888999999999999999888765 556
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhcCC-CCC-cchHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHH
Q 007400 352 TIVMSSLIDMYSKCGCLNDGRQVFDLTDN-KEN-SMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPD-KITLAVILNA 428 (605)
Q Consensus 352 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~l~~~ 428 (605)
..++..+...|...|.++.|+..|++... .|+ ...|+.|..++-..|++.+|+..|.+.+. +.|+ ..+.+.|..+
T Consensus 286 A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~--l~p~hadam~NLgni 363 (966)
T KOG4626|consen 286 AVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALR--LCPNHADAMNNLGNI 363 (966)
T ss_pred hhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHH--hCCccHHHHHHHHHH
Confidence 67888899999999999999999997654 344 56899999999999999999999999999 5676 4699999999
Q ss_pred HhccCcHHHHHHHHHHchHhhCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHH
Q 007400 429 CTHSGLVQEGLTYFESMTHDLGIIPN-QEHHACLIELLAQAGCSDQLMNQLEKM-PYEHD-SYLWNALHGVCRIHGNIDM 505 (605)
Q Consensus 429 ~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~-~~~~~~l~~~~~~~g~~~~ 505 (605)
+...|.++.|..+|.... .+.|. ...++.|...|.++|++++|+..+++. .++|+ ...++.++..|...|+.+.
T Consensus 364 ~~E~~~~e~A~~ly~~al---~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~ 440 (966)
T KOG4626|consen 364 YREQGKIEEATRLYLKAL---EVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSA 440 (966)
T ss_pred HHHhccchHHHHHHHHHH---hhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHH
Confidence 999999999999999988 67787 678999999999999999999999886 46666 6689999999999999999
Q ss_pred HHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCCC
Q 007400 506 GRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQF 552 (605)
Q Consensus 506 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 552 (605)
|...|.+++..+|.-+.++..|+.+|...|+..+|+.-++..+....
T Consensus 441 A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkP 487 (966)
T KOG4626|consen 441 AIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKP 487 (966)
T ss_pred HHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCC
Confidence 99999999999999999999999999999999999999999876543
No 15
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.91 E-value=4.5e-20 Score=192.22 Aligned_cols=419 Identities=11% Similarity=0.017 Sum_probs=296.9
Q ss_pred HHHHHHHHHHccCChHHHHHHHhhcCC--CCceeHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-ChhhHHHHHHHHhc
Q 007400 121 SYNNMLSGYANLGMMKHARNLFDNMAE--RDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISC-NEFSFAGILTICVK 197 (605)
Q Consensus 121 ~~~~li~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~ll~~~~~ 197 (605)
.+......+.+.|++++|+..|++..+ |+...|..+..+|.+.|++++|++.++...+. .| +...+..+..++..
T Consensus 129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l--~p~~~~a~~~~a~a~~~ 206 (615)
T TIGR00990 129 KLKEKGNKAYRNKDFNKAIKLYSKAIECKPDPVYYSNRAACHNALGDWEKVVEDTTAALEL--DPDYSKALNRRANAYDG 206 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHH
Confidence 355667778888899999999988763 67777888888888889999999988888873 34 44577778888888
Q ss_pred cCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhcCCCCcchHHHHHHHHHhcCChHHHHHHHhhC
Q 007400 198 LEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEM 277 (605)
Q Consensus 198 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~ 277 (605)
.|++++|...+..+...+...+.. ...++..+........+...++.-. .+...+..+...+ .....+....-+...
T Consensus 207 lg~~~eA~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~a~~~~~~~l~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 283 (615)
T TIGR00990 207 LGKYADALLDLTASCIIDGFRNEQ-SAQAVERLLKKFAESKAKEILETKP-ENLPSVTFVGNYL-QSFRPKPRPAGLEDS 283 (615)
T ss_pred cCCHHHHHHHHHHHHHhCCCccHH-HHHHHHHHHHHHHHHHHHHHHhcCC-CCCCCHHHHHHHH-HHccCCcchhhhhcc
Confidence 899988888877665543222222 1222222222111233333333221 2233333333222 211122221112211
Q ss_pred CCCCh---hhHHHHHHH---HHhCCChHHHHHHHHHHHHCC-CCC-ChHHHHHHHHHHhcccchHHHHHHHHHHHHcCCC
Q 007400 278 PEKNP---VSWTTLIAG---YTRNGLGQKALELFTRMMILR-IRP-NQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFR 349 (605)
Q Consensus 278 ~~~~~---~~~~~l~~~---~~~~g~~~~a~~~~~~m~~~g-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 349 (605)
.+.+. ..+..+... ....+++++|++.|++....+ ..| ....+..+...+...|++++|...++..++.. +
T Consensus 284 ~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P 362 (615)
T TIGR00990 284 NELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-P 362 (615)
T ss_pred cccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-C
Confidence 11111 111111111 123478999999999999865 234 34567777788889999999999999999875 4
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHHhcCC--CCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHH
Q 007400 350 SNTIVMSSLIDMYSKCGCLNDGRQVFDLTDN--KENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPD-KITLAVIL 426 (605)
Q Consensus 350 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~l~ 426 (605)
.....|..+..++...|++++|...|+.... +.+...|..+...+...|++++|+..|++.++ +.|+ ...+..+.
T Consensus 363 ~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~--l~P~~~~~~~~la 440 (615)
T TIGR00990 363 RVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSID--LDPDFIFSHIQLG 440 (615)
T ss_pred CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCccCHHHHHHHH
Confidence 4566888899999999999999999997542 23577899999999999999999999999998 4564 56788888
Q ss_pred HHHhccCcHHHHHHHHHHchHhhCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HH-------HHHHHHHH
Q 007400 427 NACTHSGLVQEGLTYFESMTHDLGIIPN-QEHHACLIELLAQAGCSDQLMNQLEKM-PYEHD-SY-------LWNALHGV 496 (605)
Q Consensus 427 ~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~-~~-------~~~~l~~~ 496 (605)
.++.+.|++++|+..|++.. ...|+ ...+..+..++...|++++|++.|++. ...|+ .. .++..+..
T Consensus 441 ~~~~~~g~~~eA~~~~~~al---~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~ 517 (615)
T TIGR00990 441 VTQYKEGSIASSMATFRRCK---KNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALAL 517 (615)
T ss_pred HHHHHCCCHHHHHHHHHHHH---HhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHH
Confidence 99999999999999999998 33454 778999999999999999999999885 22232 11 11222223
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 007400 497 CRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINER 550 (605)
Q Consensus 497 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 550 (605)
+...|++++|..+++++++++|++..++..++.++.+.|++++|+..|++..+.
T Consensus 518 ~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 518 FQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred HHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 344699999999999999999999999999999999999999999999988654
No 16
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.90 E-value=7.8e-20 Score=180.98 Aligned_cols=514 Identities=12% Similarity=0.071 Sum_probs=329.0
Q ss_pred hcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHhhhcCChhHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcC---Chh
Q 007400 29 SKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCG---SDV 105 (605)
Q Consensus 29 ~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~ 105 (605)
..+++..|+.+|.........--+.....+..++.+.++.+.|+..|...++..| ....++-.|...-.... .+.
T Consensus 176 nkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~ralqLdp--~~v~alv~L~~~~l~~~d~~s~~ 253 (1018)
T KOG2002|consen 176 NKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFERALQLDP--TCVSALVALGEVDLNFNDSDSYK 253 (1018)
T ss_pred ccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHHHHHhcCh--hhHHHHHHHHHHHHHccchHHHH
Confidence 4567777777777654432111112222333455566677777777666666554 11112222222222222 233
Q ss_pred HHHHHhccCC---CCCchHHHHHHHHHHccCChHHHHHHHhhcCCCC------ceeHHHHHHHHHhcCChHHHHHHHHHH
Q 007400 106 DARKVFDKIP---VKNLFSYNNMLSGYANLGMMKHARNLFDNMAERD------VVSWNTMIIGYAKSGAVEEGLKFYKVL 176 (605)
Q Consensus 106 ~a~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~------~~~~~~li~~~~~~~~~~~a~~~~~~m 176 (605)
.+..++...- ..|+.+.+.|.+.|.-.|+++.++.+...+...+ ..+|..+.++|-..|++++|...|.+.
T Consensus 254 ~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s 333 (1018)
T KOG2002|consen 254 KGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMES 333 (1018)
T ss_pred HHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHH
Confidence 3444444332 2466777777777777777777777776665321 245667777777778888887777766
Q ss_pred HhCCCCCChh--hHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcC----ChHHHHHHHhhcCCC-
Q 007400 177 RRFSISCNEF--SFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCG----ELSDARRLFDETDAR- 249 (605)
Q Consensus 177 ~~~~~~p~~~--~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----~~~~a~~~~~~~~~~- 249 (605)
.+. .|+.+ .+..+...+...|+++.+...|+.+.+.. +.+..+...|...|...+ ..+.|..++.+...+
T Consensus 334 ~k~--~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~ 410 (1018)
T KOG2002|consen 334 LKA--DNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT 410 (1018)
T ss_pred Hcc--CCCCccccccchhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc
Confidence 653 34433 34456667777778888887777777764 235566666666666654 456666666666654
Q ss_pred --CcchHHHHHHHHHhcCCh------HHHHHHHhhCC-CCChhhHHHHHHHHHhCCChHHHHHHHHHHHHC---CCCCCh
Q 007400 250 --DVLTWTTMVSGYAKLGDM------ESASKLFNEMP-EKNPVSWTTLIAGYTRNGLGQKALELFTRMMIL---RIRPNQ 317 (605)
Q Consensus 250 --~~~~~~~li~~~~~~~~~------~~A~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~---g~~p~~ 317 (605)
|...|-.+...+-...-+ ..|..++..-. ...+...|.+...+...|++..|...|...... ...++.
T Consensus 411 ~~d~~a~l~laql~e~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de 490 (1018)
T KOG2002|consen 411 PVDSEAWLELAQLLEQTDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDE 490 (1018)
T ss_pred cccHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccc
Confidence 344555554444433322 23333333222 245667788888888888888888888877654 122222
Q ss_pred ------HHHHHHHHHHhcccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCC--CCCcchHHH
Q 007400 318 ------HTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDN--KENSMLWNT 389 (605)
Q Consensus 318 ------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~ 389 (605)
.+--.+....-..++.+.|.+.|..+.+.. +.-+..|..++.+....++..+|...+..+.. ..++..+..
T Consensus 491 ~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkeh-p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl 569 (1018)
T KOG2002|consen 491 GKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEH-PGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSL 569 (1018)
T ss_pred cccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC-chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHH
Confidence 222334455566678888888888887764 33444555555444455677788887776542 236666777
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHhc------------cCcHHHHHHHHHHchHhhCCCC-CH
Q 007400 390 MISALTQHGYDEQAIRLFHDMVRSS-VKPDKITLAVILNACTH------------SGLVQEGLTYFESMTHDLGIIP-NQ 455 (605)
Q Consensus 390 l~~~~~~~g~~~~a~~~~~~m~~~~-~~p~~~~~~~l~~~~~~------------~g~~~~a~~~~~~~~~~~~~~p-~~ 455 (605)
+...+.....+..|.+-|....+.- ..+|..+...|.+.|.. .+..+.|+++|.++. ...| |.
T Consensus 570 ~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL---~~dpkN~ 646 (1018)
T KOG2002|consen 570 LGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVL---RNDPKNM 646 (1018)
T ss_pred HHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHH---hcCcchh
Confidence 7778888888888888666655432 23567777777765542 334677888888887 3344 47
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCCCCchHHHHHHHH
Q 007400 456 EHHACLIELLAQAGCSDQLMNQLEKMP--YEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQ--NPQSSATHGLLSSIY 531 (605)
Q Consensus 456 ~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~ 531 (605)
..-+.++-+++..|++.+|.++|.+.. ......+|-.++.+|..+|+|-.|+++|+..++. .-++..+...|+.++
T Consensus 647 yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~ 726 (1018)
T KOG2002|consen 647 YAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAW 726 (1018)
T ss_pred hhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHH
Confidence 778889999999999999999998874 2235578889999999999999999999999987 445677888999999
Q ss_pred HhcCCchHHHHHHHHHHhCC
Q 007400 532 SALGKGRLVEKVRQLINERQ 551 (605)
Q Consensus 532 ~~~g~~~~a~~~~~~~~~~~ 551 (605)
.+.|++.+|.+.........
T Consensus 727 y~~~~~~eak~~ll~a~~~~ 746 (1018)
T KOG2002|consen 727 YEAGKLQEAKEALLKARHLA 746 (1018)
T ss_pred HHhhhHHHHHHHHHHHHHhC
Confidence 99999999999888776543
No 17
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.89 E-value=4e-19 Score=175.98 Aligned_cols=514 Identities=10% Similarity=0.069 Sum_probs=387.0
Q ss_pred hhHHHHHHHHHHHcCCCCChhhHHHHHHHhh--hcCChhHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCChhHHHHH
Q 007400 33 LSEAISSLDLLAQRGIRLPAETLAFILQQCA--ESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKV 110 (605)
Q Consensus 33 ~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 110 (605)
.+.|...|....+.. +++ ....+.++|. ..+++..|..+|..++...+..... ..-.+..++.+.|+.+.|...
T Consensus 146 ~~~A~a~F~~Vl~~s-p~N--il~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD-~rIgig~Cf~kl~~~~~a~~a 221 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQS-PDN--ILALLGKARIAYNKKDYRGALKYYKKALRINPACKAD-VRIGIGHCFWKLGMSEKALLA 221 (1018)
T ss_pred HHHHHHHHHHHHhhC-Ccc--hHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCC-ccchhhhHHHhccchhhHHHH
Confidence 588999999888764 334 4455556654 5789999999999988887766555 556677888999999999999
Q ss_pred hccCCCCCchHHHHHHHHH------HccCChHHHHHHHhhcC---CCCceeHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 007400 111 FDKIPVKNLFSYNNMLSGY------ANLGMMKHARNLFDNMA---ERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSI 181 (605)
Q Consensus 111 ~~~~~~~~~~~~~~li~~~------~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~ 181 (605)
|.+..+-|+..-++++... .....+..+..++...- ..|+...+.|...|.-.|++..++.+...+.....
T Consensus 222 ~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~ 301 (1018)
T KOG2002|consen 222 FERALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTE 301 (1018)
T ss_pred HHHHHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhh
Confidence 9999886664444333221 12234555666665543 35788899999999999999999999999876331
Q ss_pred C--CChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhcCCC---CcchHHH
Q 007400 182 S--CNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDAR---DVLTWTT 256 (605)
Q Consensus 182 ~--p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~ 256 (605)
. .-...|..+.+++-..|+++.|...|.+..+....-....+..|..+|.+.|+++.+...|+.+... +..+...
T Consensus 302 ~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~i 381 (1018)
T KOG2002|consen 302 NKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKI 381 (1018)
T ss_pred hhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHH
Confidence 1 2334588899999999999999999998887654333455667889999999999999999998865 4456666
Q ss_pred HHHHHHhcC----ChHHHHHHHhhCCCC---ChhhHHHHHHHHHhCCChHHHHHHHHHHH----HCCCCCChHHHHHHHH
Q 007400 257 MVSGYAKLG----DMESASKLFNEMPEK---NPVSWTTLIAGYTRNGLGQKALELFTRMM----ILRIRPNQHTFSSCLC 325 (605)
Q Consensus 257 li~~~~~~~----~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~----~~g~~p~~~~~~~ll~ 325 (605)
+...|...+ ..+.|..++.+..++ |...|-.+...+.... +..++..|.... ..+..+.....+.+..
T Consensus 382 LG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d-~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvas 460 (1018)
T KOG2002|consen 382 LGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTD-PWASLDAYGNALDILESKGKQIPPEVLNNVAS 460 (1018)
T ss_pred HHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHH
Confidence 666676664 567888888887764 5667777766665554 444477776544 4566678889999999
Q ss_pred HHhcccchHHHHHHHHHHHHc---CCCCCh------hHHHHHHHHHHhcCChHHHHHHHHhcCCC-CCc-chHHHHHHHH
Q 007400 326 ACASIVSLKHGKQVHGFLIRT---NFRSNT------IVMSSLIDMYSKCGCLNDGRQVFDLTDNK-ENS-MLWNTMISAL 394 (605)
Q Consensus 326 ~~~~~~~~~~a~~~~~~~~~~---~~~~~~------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~-~~~~~l~~~~ 394 (605)
.....|+++.|...|..+... ...++. .+--.+..++-..++++.|.+.|..+... |+- ..|-.++...
T Consensus 461 lhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma 540 (1018)
T KOG2002|consen 461 LHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMA 540 (1018)
T ss_pred HHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHH
Confidence 999999999999999988765 112222 23345677778888999999999988754 443 3455555444
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHchHhhCCCCCHHHHHHHHHHHHh-------
Q 007400 395 TQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQ------- 467 (605)
Q Consensus 395 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~------- 467 (605)
...+...+|...+....... .-|+..+..+...+.....+.-|..-|..+.++....+|+...-.|+..+.+
T Consensus 541 ~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~r 619 (1018)
T KOG2002|consen 541 RDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSR 619 (1018)
T ss_pred HhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhccccc
Confidence 45688899999999988753 4456667777778888888888888777776554444677776677776543
Q ss_pred -----cCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHH
Q 007400 468 -----AGCSDQLMNQLEKMP--YEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLV 540 (605)
Q Consensus 468 -----~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 540 (605)
.+..++|+++|.+.. .+.|..+-+.++.+++..|++..|..+|.++.+..-+.+.+|..++.+|..+|+|..|
T Consensus 620 n~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~A 699 (1018)
T KOG2002|consen 620 NPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLA 699 (1018)
T ss_pred ChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHH
Confidence 345778999998762 3456777788899999999999999999999998777889999999999999999999
Q ss_pred HHHHHHHHhCCC
Q 007400 541 EKVRQLINERQF 552 (605)
Q Consensus 541 ~~~~~~~~~~~~ 552 (605)
+++|+...+.-.
T Consensus 700 IqmYe~~lkkf~ 711 (1018)
T KOG2002|consen 700 IQMYENCLKKFY 711 (1018)
T ss_pred HHHHHHHHHHhc
Confidence 999999876544
No 18
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.87 E-value=2e-19 Score=178.15 Aligned_cols=287 Identities=12% Similarity=0.095 Sum_probs=205.9
Q ss_pred cCChHHHHHHHhhCCC---CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC---hHHHHHHHHHHhcccchHHHH
Q 007400 264 LGDMESASKLFNEMPE---KNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPN---QHTFSSCLCACASIVSLKHGK 337 (605)
Q Consensus 264 ~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~---~~~~~~ll~~~~~~~~~~~a~ 337 (605)
.|++++|...|.++.+ .+..++..+...+...|++++|..+++.+...+..++ ...+..+...+...|+++.|.
T Consensus 48 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~ 127 (389)
T PRK11788 48 NEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRAE 127 (389)
T ss_pred cCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHH
Confidence 3444444444444432 1334566666666777777777777776665432211 134556666667777777777
Q ss_pred HHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCCC-CC------cchHHHHHHHHHHcCCHHHHHHHHHHH
Q 007400 338 QVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNK-EN------SMLWNTMISALTQHGYDEQAIRLFHDM 410 (605)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~------~~~~~~l~~~~~~~g~~~~a~~~~~~m 410 (605)
.++..+.+.. +.+..++..++.++.+.|++++|.+.++.+... |+ ...+..++..+...|++++|...++++
T Consensus 128 ~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 206 (389)
T PRK11788 128 ELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKA 206 (389)
T ss_pred HHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 7777776653 445566777777777777777777777765432 11 113456777788899999999999999
Q ss_pred HHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHchHhhCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHhCC-CCCC
Q 007400 411 VRSSVKPD-KITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPN--QEHHACLIELLAQAGCSDQLMNQLEKMP-YEHD 486 (605)
Q Consensus 411 ~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~ 486 (605)
.+. .|+ ...+..+...+...|++++|..+++++.. ..|+ ..++..++.+|.+.|++++|...++++. ..|+
T Consensus 207 l~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~---~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~ 281 (389)
T PRK11788 207 LAA--DPQCVRASILLGDLALAQGDYAAAIEALERVEE---QDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPG 281 (389)
T ss_pred HhH--CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---HChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 874 454 45778888899999999999999999883 2343 4567888999999999999999998863 4567
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHh---cCCchHHHHHHHHHHhCCCcCCCc
Q 007400 487 SYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSA---LGKGRLVEKVRQLINERQFKKEQA 557 (605)
Q Consensus 487 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~~~~~~~ 557 (605)
...+..++..+.+.|++++|..+++++++..|++. .+..+...+.. .|+.+++..+++.+.+.+++++|.
T Consensus 282 ~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~-~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 282 ADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLR-GFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred chHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHH-HHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 66778889999999999999999999999999655 55555555443 568999999999999999988886
No 19
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.86 E-value=2.2e-18 Score=178.86 Aligned_cols=356 Identities=10% Similarity=0.030 Sum_probs=213.6
Q ss_pred HHccCChHHHHHHHhhcCC------CCceeHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCChH
Q 007400 129 YANLGMMKHARNLFDNMAE------RDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELK 202 (605)
Q Consensus 129 ~~~~~~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~ 202 (605)
+.++.+++...-.|....+ .+......++..+.+.|++++|..+++........ +...+..++.++...|+++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~-~~~~l~~l~~~~l~~g~~~ 93 (656)
T PRK15174 15 LLKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKN-GRDLLRRWVISPLASSQPD 93 (656)
T ss_pred hhhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCC-chhHHHHHhhhHhhcCCHH
Confidence 3455566665555555542 12333444556666667777777776666653322 2233344444455566666
Q ss_pred HHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhcCCCCcchHHHHHHHHHhcCChHHHHHHHhhCCCCCh
Q 007400 203 LTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNP 282 (605)
Q Consensus 203 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~ 282 (605)
.|...++.+....+. +...+..+..++...|++++|...+++....+ ..+.
T Consensus 94 ~A~~~l~~~l~~~P~-~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~----------------------------P~~~ 144 (656)
T PRK15174 94 AVLQVVNKLLAVNVC-QPEDVLLVASVLLKSKQYATVADLAEQAWLAF----------------------------SGNS 144 (656)
T ss_pred HHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----------------------------CCcH
Confidence 666666666655432 34455555566666666666665555443211 1234
Q ss_pred hhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhcccchHHHHHHHHHHHHcCCCCChhHHHHHHHHH
Q 007400 283 VSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMY 362 (605)
Q Consensus 283 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 362 (605)
..+..++..+...|++++|...++.+.... |+.......+..+...|++++|...++.+.+....++......+...+
T Consensus 145 ~a~~~la~~l~~~g~~~eA~~~~~~~~~~~--P~~~~a~~~~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l 222 (656)
T PRK15174 145 QIFALHLRTLVLMDKELQAISLARTQAQEV--PPRGDMIATCLSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTL 222 (656)
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHH
Confidence 455566666666666666666666655432 222211111223555666666666666665543223333344445666
Q ss_pred HhcCChHHHHHHHHhcCC--CCCcchHHHHHHHHHHcCCHHH----HHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcH
Q 007400 363 SKCGCLNDGRQVFDLTDN--KENSMLWNTMISALTQHGYDEQ----AIRLFHDMVRSSVKPD-KITLAVILNACTHSGLV 435 (605)
Q Consensus 363 ~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~----a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~ 435 (605)
...|++++|...|+.... +.+...+..+...+...|++++ |+..|++..+ +.|+ ...+..+...+...|++
T Consensus 223 ~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~--l~P~~~~a~~~lg~~l~~~g~~ 300 (656)
T PRK15174 223 CAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQ--FNSDNVRIVTLYADALIRTGQN 300 (656)
T ss_pred HHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHCCCH
Confidence 677777777777765442 2245566667777777777774 6778888777 4554 45777777888888888
Q ss_pred HHHHHHHHHchHhhCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHhCC-CCCCH-HHHHHHHHHHHhcCCHHHHHHHHHH
Q 007400 436 QEGLTYFESMTHDLGIIPN-QEHHACLIELLAQAGCSDQLMNQLEKMP-YEHDS-YLWNALHGVCRIHGNIDMGRKVVDQ 512 (605)
Q Consensus 436 ~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~ 512 (605)
++|...++++. ...|+ ...+..+..+|.+.|++++|.+.++++. ..|+. ..+..++.++...|+.++|...|++
T Consensus 301 ~eA~~~l~~al---~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~ 377 (656)
T PRK15174 301 EKAIPLLQQSL---ATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEH 377 (656)
T ss_pred HHHHHHHHHHH---HhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 88888888877 33454 5566677788888888888888887753 33443 3333456677788888888888888
Q ss_pred HHhcCCCCC
Q 007400 513 LIDQNPQSS 521 (605)
Q Consensus 513 ~~~~~p~~~ 521 (605)
+++..|++.
T Consensus 378 al~~~P~~~ 386 (656)
T PRK15174 378 YIQARASHL 386 (656)
T ss_pred HHHhChhhc
Confidence 888877653
No 20
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.86 E-value=6.6e-18 Score=179.16 Aligned_cols=394 Identities=10% Similarity=0.015 Sum_probs=219.1
Q ss_pred HHHHHHHccCChHHHHHHHhhcCC---CCceeHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCC
Q 007400 124 NMLSGYANLGMMKHARNLFDNMAE---RDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEE 200 (605)
Q Consensus 124 ~li~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~ 200 (605)
-.+......|+.++|++++..... .+...+..+...+...|++++|.++|++..+.. +.+...+..+...+...|+
T Consensus 20 d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~l~~~g~ 98 (765)
T PRK10049 20 DWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILTLADAGQ 98 (765)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCC
Confidence 344455556666666666666543 122235555566666666666666666655521 1223444455555556666
Q ss_pred hHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhcCCC---CcchHHHHHHHHHhcCChHHHHHHHhhC
Q 007400 201 LKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDAR---DVLTWTTMVSGYAKLGDMESASKLFNEM 277 (605)
Q Consensus 201 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~A~~~~~~~ 277 (605)
+++|...++++++..+ .+.. +..+..++...|+.++|...++++... +...+..+...+...+..+.|+..++..
T Consensus 99 ~~eA~~~l~~~l~~~P-~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~ 176 (765)
T PRK10049 99 YDEALVKAKQLVSGAP-DKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAIDDA 176 (765)
T ss_pred HHHHHHHHHHHHHhCC-CCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHhC
Confidence 6666666666655532 2333 555555566666666666555555432 2223333444444444444444444444
Q ss_pred CCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChHHHHHHHHHH-----hcccch---HHHHHHHHHHHHc-CC
Q 007400 278 PEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCAC-----ASIVSL---KHGKQVHGFLIRT-NF 348 (605)
Q Consensus 278 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~-----~~~~~~---~~a~~~~~~~~~~-~~ 348 (605)
.. ++.....+ . ......++... ...+++ +.|.+.++.+.+. ..
T Consensus 177 ~~-~p~~~~~l-------------------------~--~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~ 228 (765)
T PRK10049 177 NL-TPAEKRDL-------------------------E--ADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHD 228 (765)
T ss_pred CC-CHHHHHHH-------------------------H--HHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhccc
Confidence 33 11100000 0 00001111111 111122 4555555555543 11
Q ss_pred CCChh-HHH----HHHHHHHhcCChHHHHHHHHhcCCCC-Ccc--hHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC--
Q 007400 349 RSNTI-VMS----SLIDMYSKCGCLNDGRQVFDLTDNKE-NSM--LWNTMISALTQHGYDEQAIRLFHDMVRSSVKPD-- 418 (605)
Q Consensus 349 ~~~~~-~~~----~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~--~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~-- 418 (605)
.|+.. .+. ..+..+...|++++|+..|+.+...+ +.. .-..+...|...|++++|+..|+++.+. .|.
T Consensus 229 ~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~--~p~~~ 306 (765)
T PRK10049 229 NPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYH--PETIA 306 (765)
T ss_pred CCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhc--CCCCC
Confidence 12111 111 11223345577777777777765431 111 1122455677777777777777776653 222
Q ss_pred ---HHHHHHHHHHHhccCcHHHHHHHHHHchHhhC----------CCCC---HHHHHHHHHHHHhcCChHHHHHHHHhCC
Q 007400 419 ---KITLAVILNACTHSGLVQEGLTYFESMTHDLG----------IIPN---QEHHACLIELLAQAGCSDQLMNQLEKMP 482 (605)
Q Consensus 419 ---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~----------~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 482 (605)
......+..++...|++++|..+++.+..... -.|+ ...+..++..+...|++++|++.++++.
T Consensus 307 ~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al 386 (765)
T PRK10049 307 DLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELA 386 (765)
T ss_pred CCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 23455555667777777777777777762210 1122 2345566777888888888888888752
Q ss_pred --CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 007400 483 --YEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINER 550 (605)
Q Consensus 483 --~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 550 (605)
.+.+...+..++..+...|++++|++.++++++..|++...+..++.++...|++++|+.+++.+.+.
T Consensus 387 ~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~ 456 (765)
T PRK10049 387 YNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAR 456 (765)
T ss_pred HhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 34557777788888888888888888888888888888888888888888888888888888887664
No 21
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.86 E-value=1.1e-17 Score=174.51 Aligned_cols=414 Identities=11% Similarity=0.023 Sum_probs=295.1
Q ss_pred HHHHHHHHHhcCChhHHHHHhccCCC--CCchHHHHHHHHHHccCChHHHHHHHhhcCC--C-CceeHHHHHHHHHhcCC
Q 007400 91 SNHLISMYFKCGSDVDARKVFDKIPV--KNLFSYNNMLSGYANLGMMKHARNLFDNMAE--R-DVVSWNTMIIGYAKSGA 165 (605)
Q Consensus 91 ~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~ 165 (605)
+......+.+.|++++|+..|++... |+...|..+..+|.+.|++++|++.++...+ | +...|..+..++...|+
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg~ 209 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIECKPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGK 209 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCC
Confidence 34566778889999999999999764 6778888899999999999999999998875 2 45678888899999999
Q ss_pred hHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhh
Q 007400 166 VEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDE 245 (605)
Q Consensus 166 ~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 245 (605)
+++|+..|......+-..+.. ...++..+.. ..+........+.. +++...+..+.. |...........-+.+
T Consensus 210 ~~eA~~~~~~~~~~~~~~~~~-~~~~~~~~l~----~~a~~~~~~~l~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 282 (615)
T TIGR00990 210 YADALLDLTASCIIDGFRNEQ-SAQAVERLLK----KFAESKAKEILETK-PENLPSVTFVGN-YLQSFRPKPRPAGLED 282 (615)
T ss_pred HHHHHHHHHHHHHhCCCccHH-HHHHHHHHHH----HHHHHHHHHHHhcC-CCCCCCHHHHHH-HHHHccCCcchhhhhc
Confidence 999999887776532211211 1111211111 12222233333322 122223332322 2222222222222222
Q ss_pred cCCCCc---chHHHHHHH---HHhcCChHHHHHHHhhCCCC------ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCC
Q 007400 246 TDARDV---LTWTTMVSG---YAKLGDMESASKLFNEMPEK------NPVSWTTLIAGYTRNGLGQKALELFTRMMILRI 313 (605)
Q Consensus 246 ~~~~~~---~~~~~li~~---~~~~~~~~~A~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 313 (605)
....+. ..+..+... ....+++++|.+.|+...+. ....|+.+...+...|++++|+..|++....
T Consensus 283 ~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l-- 360 (615)
T TIGR00990 283 SNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL-- 360 (615)
T ss_pred ccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--
Confidence 211111 112211111 12347899999999887642 4457888888999999999999999999875
Q ss_pred CCC-hHHHHHHHHHHhcccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCC--CCCcchHHHH
Q 007400 314 RPN-QHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDN--KENSMLWNTM 390 (605)
Q Consensus 314 ~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l 390 (605)
.|+ ...|..+...+...|++++|...++.+++.. +.+..++..+...+...|++++|...|+.... +.+...+..+
T Consensus 361 ~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~l 439 (615)
T TIGR00990 361 DPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQL 439 (615)
T ss_pred CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHH
Confidence 454 5578888888999999999999999998875 56678899999999999999999999997653 2356678888
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHchHhhCCCCCH--------HHHHHH
Q 007400 391 ISALTQHGYDEQAIRLFHDMVRSSVKP-DKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQ--------EHHACL 461 (605)
Q Consensus 391 ~~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~--------~~~~~l 461 (605)
...+.+.|++++|+..|++.++. .| +...+..+..++...|++++|+..|++.. .+.|+. ..+...
T Consensus 440 a~~~~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al---~l~p~~~~~~~~~~~l~~~a 514 (615)
T TIGR00990 440 GVTQYKEGSIASSMATFRRCKKN--FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAI---ELEKETKPMYMNVLPLINKA 514 (615)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHHHHHHHHH---hcCCccccccccHHHHHHHH
Confidence 89999999999999999999884 56 46789999999999999999999999988 333331 112222
Q ss_pred HHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 007400 462 IELLAQAGCSDQLMNQLEKM-PYEH-DSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQ 519 (605)
Q Consensus 462 ~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 519 (605)
...+...|++++|.+++++. ...| +...+..++..+...|++++|+..|++++++.+.
T Consensus 515 ~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~ 574 (615)
T TIGR00990 515 LALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELART 574 (615)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhcc
Confidence 33445579999999999885 3334 4557888999999999999999999999999774
No 22
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.86 E-value=4.8e-19 Score=175.51 Aligned_cols=293 Identities=12% Similarity=0.094 Sum_probs=159.6
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCC---hhHHHHHHHHHHhcCC
Q 007400 159 GYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSN---VVISSSIVDAYAKCGE 235 (605)
Q Consensus 159 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~ 235 (605)
.+...|++++|...|+++.+.+. .+..++..+...+...|++++|..+++.+...+..++ ..++..+...|.+.|+
T Consensus 44 ~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~ 122 (389)
T PRK11788 44 NFLLNEQPDKAIDLFIEMLKVDP-ETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGL 122 (389)
T ss_pred HHHhcCChHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCC
Confidence 34455666666666666655321 2333555555555666666666666665554322111 1344555556666666
Q ss_pred hHHHHHHHhhcCCC---CcchHHHHHHHHHhcCChHHHHHHHhhCCCCC--------hhhHHHHHHHHHhCCChHHHHHH
Q 007400 236 LSDARRLFDETDAR---DVLTWTTMVSGYAKLGDMESASKLFNEMPEKN--------PVSWTTLIAGYTRNGLGQKALEL 304 (605)
Q Consensus 236 ~~~a~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~l~~~~~~~g~~~~a~~~ 304 (605)
+++|..+|+++... +..++..++..+...|++++|.+.++.+.+.+ ...+..++..+.+.|++++|...
T Consensus 123 ~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 202 (389)
T PRK11788 123 LDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARAL 202 (389)
T ss_pred HHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 66666655555432 23344444455555555555555555443211 11234455556666666666666
Q ss_pred HHHHHHCCCCCChHHHHHHHHHHhcccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCC-CCC
Q 007400 305 FTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDN-KEN 383 (605)
Q Consensus 305 ~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~ 383 (605)
|+++.+.. +.+...+..+...+.+.|++++|..+++++.+.+......+++.++.+|...|++++|...++.+.. .|+
T Consensus 203 ~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~ 281 (389)
T PRK11788 203 LKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPG 281 (389)
T ss_pred HHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 66666532 2233455555566666666666666666666543222234455666666666666666666665442 245
Q ss_pred cchHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc---cCcHHHHHHHHHHchHhhCCCCCHH
Q 007400 384 SMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTH---SGLVQEGLTYFESMTHDLGIIPNQE 456 (605)
Q Consensus 384 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~~~~p~~~ 456 (605)
...+..++..+.+.|++++|..+++++.+ ..|+..++..++..+.. .|+.+++..+++++. +.++.|++.
T Consensus 282 ~~~~~~la~~~~~~g~~~~A~~~l~~~l~--~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~-~~~~~~~p~ 354 (389)
T PRK11788 282 ADLLLALAQLLEEQEGPEAAQALLREQLR--RHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLV-GEQLKRKPR 354 (389)
T ss_pred chHHHHHHHHHHHhCCHHHHHHHHHHHHH--hCcCHHHHHHHHHHhhhccCCccchhHHHHHHHHH-HHHHhCCCC
Confidence 44556666666666666666666666665 35666666655555442 345666666666666 334455443
No 23
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.85 E-value=1.3e-17 Score=173.17 Aligned_cols=343 Identities=13% Similarity=0.055 Sum_probs=205.6
Q ss_pred HHhcCChhHHHHHhccCCCC------CchHHHHHHHHHHccCChHHHHHHHhhcCC---CCceeHHHHHHHHHhcCChHH
Q 007400 98 YFKCGSDVDARKVFDKIPVK------NLFSYNNMLSGYANLGMMKHARNLFDNMAE---RDVVSWNTMIIGYAKSGAVEE 168 (605)
Q Consensus 98 ~~~~g~~~~a~~~~~~~~~~------~~~~~~~li~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~ 168 (605)
+.+..+|+.---+|...++. +..-...++..+.+.|++++|..+++.... .+...+..++.+....|++++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~ 94 (656)
T PRK15174 15 LLKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDA 94 (656)
T ss_pred hhhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHH
Confidence 45677888877777777642 334456678889999999999999998864 345567777788888999999
Q ss_pred HHHHHHHHHhCCCCC-ChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhcC
Q 007400 169 GLKFYKVLRRFSISC-NEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETD 247 (605)
Q Consensus 169 a~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 247 (605)
|.+.|+++.+ ..| +...+..+...+...|+++.|...++.+++..+ .+...+..+..++...|++++|...++.+.
T Consensus 95 A~~~l~~~l~--~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P-~~~~a~~~la~~l~~~g~~~eA~~~~~~~~ 171 (656)
T PRK15174 95 VLQVVNKLLA--VNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFS-GNSQIFALHLRTLVLMDKELQAISLARTQA 171 (656)
T ss_pred HHHHHHHHHH--hCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHCCChHHHHHHHHHHH
Confidence 9999999988 345 455778888889999999999999999998743 356778888899999999999998777653
Q ss_pred CC---CcchHHHHHHHHHhcCChHHHHHHHhhCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChHHHHHHH
Q 007400 248 AR---DVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCL 324 (605)
Q Consensus 248 ~~---~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll 324 (605)
.. +...+..+ ..+...|++++|...++. +.+....++...+..+.
T Consensus 172 ~~~P~~~~a~~~~-~~l~~~g~~~eA~~~~~~-------------------------------~l~~~~~~~~~~~~~l~ 219 (656)
T PRK15174 172 QEVPPRGDMIATC-LSFLNKSRLPEDHDLARA-------------------------------LLPFFALERQESAGLAV 219 (656)
T ss_pred HhCCCCHHHHHHH-HHHHHcCCHHHHHHHHHH-------------------------------HHhcCCCcchhHHHHHH
Confidence 21 11222121 224444555555555444 43332112222223333
Q ss_pred HHHhcccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHH----HHHHHHhcCC--CCCcchHHHHHHHHHHcC
Q 007400 325 CACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLND----GRQVFDLTDN--KENSMLWNTMISALTQHG 398 (605)
Q Consensus 325 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~----A~~~~~~~~~--~~~~~~~~~l~~~~~~~g 398 (605)
.++...|++++|...+..+.+.. +.+...+..+...|...|++++ |...|+.... +.+...+..+...+...|
T Consensus 220 ~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g 298 (656)
T PRK15174 220 DTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTG 298 (656)
T ss_pred HHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCC
Confidence 34444444444444444444433 3334444445555555555543 4444544321 113344555555555555
Q ss_pred CHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHchHhhCCCCCH-HHHHHHHHHHHhcCChHHHHH
Q 007400 399 YDEQAIRLFHDMVRSSVKPD-KITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQ-EHHACLIELLAQAGCSDQLMN 476 (605)
Q Consensus 399 ~~~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~ 476 (605)
++++|+..+++..+ ..|+ ...+..+..++...|++++|...++++. ...|+. ..+..+..++...|++++|..
T Consensus 299 ~~~eA~~~l~~al~--l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al---~~~P~~~~~~~~~a~al~~~G~~deA~~ 373 (656)
T PRK15174 299 QNEKAIPLLQQSLA--THPDLPYVRAMYARALRQVGQYTAASDEFVQLA---REKGVTSKWNRYAAAALLQAGKTSEAES 373 (656)
T ss_pred CHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH---HhCccchHHHHHHHHHHHHCCCHHHHHH
Confidence 55555555555555 2333 3344445555555555555555555555 123332 222333445555555555555
Q ss_pred HHHhC
Q 007400 477 QLEKM 481 (605)
Q Consensus 477 ~~~~~ 481 (605)
.|++.
T Consensus 374 ~l~~a 378 (656)
T PRK15174 374 VFEHY 378 (656)
T ss_pred HHHHH
Confidence 55543
No 24
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.85 E-value=4.5e-17 Score=172.87 Aligned_cols=410 Identities=13% Similarity=0.079 Sum_probs=284.4
Q ss_pred HHHHHHHHHhcCChhHHHHHhccCCC---CCchHHHHHHHHHHccCChHHHHHHHhhcCC---CCceeHHHHHHHHHhcC
Q 007400 91 SNHLISMYFKCGSDVDARKVFDKIPV---KNLFSYNNMLSGYANLGMMKHARNLFDNMAE---RDVVSWNTMIIGYAKSG 164 (605)
Q Consensus 91 ~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~ 164 (605)
..=.+......|+.++|++++.+... .+...+..+...+...|++++|..+|++..+ .+...+..++..+...|
T Consensus 18 ~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g 97 (765)
T PRK10049 18 IADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAG 97 (765)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC
Confidence 34466777889999999999999874 2334689999999999999999999999653 34566778888999999
Q ss_pred ChHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHh
Q 007400 165 AVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFD 244 (605)
Q Consensus 165 ~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 244 (605)
++++|+..+++..+.. +.+.. +..+..++...|+.++|...++++.+..+. +...+..+..++...|..+.|.+.++
T Consensus 98 ~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~-~~~~~~~la~~l~~~~~~e~Al~~l~ 174 (765)
T PRK10049 98 QYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQ-TQQYPTEYVQALRNNRLSAPALGAID 174 (765)
T ss_pred CHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCChHHHHHHHH
Confidence 9999999999998742 23444 888888899999999999999999998654 56666678888889999999999998
Q ss_pred hcCCCCcchHHHHHHHHHhcCChHHHHHHHhhCCCCChhhHHHHHHHHHhCCCh---HHHHHHHHHHHHC-CCCCChH-H
Q 007400 245 ETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLG---QKALELFTRMMIL-RIRPNQH-T 319 (605)
Q Consensus 245 ~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~---~~a~~~~~~m~~~-g~~p~~~-~ 319 (605)
.... ++.....+ . ...+...... .+.......+++ ++|++.++.+.+. ...|+.. .
T Consensus 175 ~~~~-~p~~~~~l-~-------~~~~~~~~r~----------~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~ 235 (765)
T PRK10049 175 DANL-TPAEKRDL-E-------ADAAAELVRL----------SFMPTRSEKERYAIADRALAQYDALEALWHDNPDATAD 235 (765)
T ss_pred hCCC-CHHHHHHH-H-------HHHHHHHHHh----------hcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchH
Confidence 8775 32210000 0 0000000000 000001111222 5666666666643 1222221 1
Q ss_pred HH----HHHHHHhcccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCCC-CC-----cchHHH
Q 007400 320 FS----SCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNK-EN-----SMLWNT 389 (605)
Q Consensus 320 ~~----~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~-----~~~~~~ 389 (605)
+. ..+..+...|++++|...|+.+.+.+.+........+...|...|++++|+..|+.+... |. ......
T Consensus 236 ~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~ 315 (765)
T PRK10049 236 YQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELAD 315 (765)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHH
Confidence 11 112334455777777777777776542211112222466777778888888877765432 21 123445
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCC-----------CCCCH---HHHHHHHHHHhccCcHHHHHHHHHHchHhhCCCCC-
Q 007400 390 MISALTQHGYDEQAIRLFHDMVRSS-----------VKPDK---ITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPN- 454 (605)
Q Consensus 390 l~~~~~~~g~~~~a~~~~~~m~~~~-----------~~p~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~- 454 (605)
+..++...|++++|..+++++.... -.|+. ..+..+...+...|+.++|+..++++. ...|+
T Consensus 316 L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al---~~~P~n 392 (765)
T PRK10049 316 LFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELA---YNAPGN 392 (765)
T ss_pred HHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHH---HhCCCC
Confidence 5566778888888888888877642 12332 245667778889999999999999998 33454
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHH
Q 007400 455 QEHHACLIELLAQAGCSDQLMNQLEKMP-YEH-DSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHG 525 (605)
Q Consensus 455 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 525 (605)
...+..++..+...|++++|++.+++.. ..| +...+...+..+...|++++|+.+++++++..|+++.+..
T Consensus 393 ~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~~~ 465 (765)
T PRK10049 393 QGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPGVQR 465 (765)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 7788999999999999999999999863 334 4677777888899999999999999999999998775443
No 25
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.84 E-value=1.7e-16 Score=165.04 Aligned_cols=425 Identities=10% Similarity=0.059 Sum_probs=252.7
Q ss_pred hHHHHHHHHHhcCChhHHHHHhccCCCCCch---HHHHHHHHHHccCChHHHHHHHhhcCCCCceeHH-HH--HHHHHhc
Q 007400 90 LSNHLISMYFKCGSDVDARKVFDKIPVKNLF---SYNNMLSGYANLGMMKHARNLFDNMAERDVVSWN-TM--IIGYAKS 163 (605)
Q Consensus 90 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~l--i~~~~~~ 163 (605)
.|...+ ...+.|+++.|+..|++..+.++. ....++..+...|+.++|+..+++...|+...+. .+ ...+...
T Consensus 37 ~y~~ai-i~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~ 115 (822)
T PRK14574 37 QYDSLI-IRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNE 115 (822)
T ss_pred HHHHHH-HHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHc
Confidence 444333 356889999999999998754332 1237888888889999999999998876444443 33 3467777
Q ss_pred CChHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHH
Q 007400 164 GAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLF 243 (605)
Q Consensus 164 ~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 243 (605)
|++++|+++|+++.+... -+...+..++..+...++.++|++.++.+.... |+...+..++..+...++..+|++.+
T Consensus 116 gdyd~Aiely~kaL~~dP-~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~d--p~~~~~l~layL~~~~~~~~~AL~~~ 192 (822)
T PRK14574 116 KRWDQALALWQSSLKKDP-TNPDLISGMIMTQADAGRGGVVLKQATELAERD--PTVQNYMTLSYLNRATDRNYDALQAS 192 (822)
T ss_pred CCHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccC--cchHHHHHHHHHHHhcchHHHHHHHH
Confidence 999999999999988442 235566677778888899999999988887764 44445544544554466666688888
Q ss_pred hhcCCC---CcchHHHHHHHHHhcCChHHHHHHHhhCCCC-ChhhHHH----HHHHHHhC---------CC---hHHHHH
Q 007400 244 DETDAR---DVLTWTTMVSGYAKLGDMESASKLFNEMPEK-NPVSWTT----LIAGYTRN---------GL---GQKALE 303 (605)
Q Consensus 244 ~~~~~~---~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~----l~~~~~~~---------g~---~~~a~~ 303 (605)
+++... +...+..+..++.+.|-...|.++...-+.- +...+.- .+.-.++. .+ .+.|+.
T Consensus 193 ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala 272 (822)
T PRK14574 193 SEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALA 272 (822)
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHH
Confidence 888764 4566777788888888888888888775531 1111111 11111111 11 233444
Q ss_pred HHHHHHH-CCCCCCh-HHH----HHHHHHHhcccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHh
Q 007400 304 LFTRMMI-LRIRPNQ-HTF----SSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDL 377 (605)
Q Consensus 304 ~~~~m~~-~g~~p~~-~~~----~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 377 (605)
-++.+.. .+-.|.. ..| .=.+-++...++..++...++.+...+.+....+-..+.++|...+++++|..+|+.
T Consensus 273 ~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~ 352 (822)
T PRK14574 273 DYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSS 352 (822)
T ss_pred HHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHH
Confidence 4444443 1111221 111 122334555666666666666666665554455556666666666666666666665
Q ss_pred cCCC--------CCcchHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-----------CCCH---HHHHHHHHHHhccCcH
Q 007400 378 TDNK--------ENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSV-----------KPDK---ITLAVILNACTHSGLV 435 (605)
Q Consensus 378 ~~~~--------~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~-----------~p~~---~~~~~l~~~~~~~g~~ 435 (605)
+... ++......|.-++...+++++|..+++++.+... .||+ ..+..++..+...|+.
T Consensus 353 ~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl 432 (822)
T PRK14574 353 LYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDL 432 (822)
T ss_pred HhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCH
Confidence 4321 0111234555666666666666666666665211 1222 1333444555566666
Q ss_pred HHHHHHHHHchHhhCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 007400 436 QEGLTYFESMTHDLGIIP-NQEHHACLIELLAQAGCSDQLMNQLEKMP--YEHDSYLWNALHGVCRIHGNIDMGRKVVDQ 512 (605)
Q Consensus 436 ~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 512 (605)
.+|++.++.+. ...| |......+...+...|.+.+|++.++... .+.+..+....+.++...|++++|..+.++
T Consensus 433 ~~Ae~~le~l~---~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~ 509 (822)
T PRK14574 433 PTAQKKLEDLS---STAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDD 509 (822)
T ss_pred HHHHHHHHHHH---HhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 66666666665 2233 35555666666666666666666665432 122344444555555566666666666666
Q ss_pred HHhcCCCCC
Q 007400 513 LIDQNPQSS 521 (605)
Q Consensus 513 ~~~~~p~~~ 521 (605)
+++..|+++
T Consensus 510 l~~~~Pe~~ 518 (822)
T PRK14574 510 VISRSPEDI 518 (822)
T ss_pred HHhhCCCch
Confidence 666666555
No 26
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.84 E-value=2.1e-16 Score=164.27 Aligned_cols=409 Identities=9% Similarity=-0.009 Sum_probs=280.0
Q ss_pred hhcCChhHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCChhHHHHHhccCCCCCc-hHHHHH--HHHHHccCChHHHH
Q 007400 63 AESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNL-FSYNNM--LSGYANLGMMKHAR 139 (605)
Q Consensus 63 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~l--i~~~~~~~~~~~A~ 139 (605)
.+.|+++.|+..++++++..+..+.. ++ .++..+...|+.++|+..+++...|+. ..+..+ ...+...|++++|.
T Consensus 45 ~r~Gd~~~Al~~L~qaL~~~P~~~~a-v~-dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Ai 122 (822)
T PRK14574 45 ARAGDTAPVLDYLQEESKAGPLQSGQ-VD-DWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQAL 122 (822)
T ss_pred HhCCCHHHHHHHHHHHHhhCccchhh-HH-HHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 36677777777777777666554433 33 566666666777777777777765432 233333 34566667777777
Q ss_pred HHHhhcCC--C-CceeHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCC
Q 007400 140 NLFDNMAE--R-DVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGF 216 (605)
Q Consensus 140 ~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 216 (605)
++|+++.+ | ++..+..++..+...++.++|++.++++.. ..|+...+..++..+...++..+|...++++.+..+
T Consensus 123 ely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~--~dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~P 200 (822)
T PRK14574 123 ALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAE--RDPTVQNYMTLSYLNRATDRNYDALQASSEAVRLAP 200 (822)
T ss_pred HHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcc--cCcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhCC
Confidence 77777664 2 344555566667777777777777777765 335555554443344345555557777777777643
Q ss_pred CCChhHHHHHHHHHHhcCChHHHHHHHhhcCCC-Ccch--------HHHHHHHH---H--hcCC---hHHHHHHHhhCCC
Q 007400 217 LSNVVISSSIVDAYAKCGELSDARRLFDETDAR-DVLT--------WTTMVSGY---A--KLGD---MESASKLFNEMPE 279 (605)
Q Consensus 217 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~--------~~~li~~~---~--~~~~---~~~A~~~~~~~~~ 279 (605)
.+...+..++.+..+.|-...|.++..+-..- +... ....++.- . ...+ .+.|+.-++.+..
T Consensus 201 -~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~ 279 (822)
T PRK14574 201 -TSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLT 279 (822)
T ss_pred -CCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHh
Confidence 25666666777777777777777777665432 1111 11111100 0 1122 3344444444432
Q ss_pred -----CCh-----hhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhcccchHHHHHHHHHHHHcCC-
Q 007400 280 -----KNP-----VSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNF- 348 (605)
Q Consensus 280 -----~~~-----~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~- 348 (605)
|.. ...--.+-++...|++.+|++.|+.+...|.+....+-..+..+|...+++++|..++..+.....
T Consensus 280 ~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~ 359 (822)
T PRK14574 280 RWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGK 359 (822)
T ss_pred hccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcccc
Confidence 211 122234567889999999999999999988765666888999999999999999999999977541
Q ss_pred ----CCChhHHHHHHHHHHhcCChHHHHHHHHhcCC-CC-------------Cc---chHHHHHHHHHHcCCHHHHHHHH
Q 007400 349 ----RSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDN-KE-------------NS---MLWNTMISALTQHGYDEQAIRLF 407 (605)
Q Consensus 349 ----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-------------~~---~~~~~l~~~~~~~g~~~~a~~~~ 407 (605)
+++......|.-+|...+++++|..+++.+.. .| |. ..+..++..+...|+..+|++.+
T Consensus 360 ~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~l 439 (822)
T PRK14574 360 TFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKL 439 (822)
T ss_pred ccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 23344457889999999999999999998765 22 11 12445677788999999999999
Q ss_pred HHHHHCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHchHhhCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHhC
Q 007400 408 HDMVRSSVKP-DKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPN-QEHHACLIELLAQAGCSDQLMNQLEKM 481 (605)
Q Consensus 408 ~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~ 481 (605)
+++... .| |......+...+...|.+.+|...++.+. .+.|+ ..+....+.++...|++.+|..+.++.
T Consensus 440 e~l~~~--aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~---~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l 510 (822)
T PRK14574 440 EDLSST--APANQNLRIALASIYLARDLPRKAEQELKAVE---SLAPRSLILERAQAETAMALQEWHQMELLTDDV 510 (822)
T ss_pred HHHHHh--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh---hhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 999884 55 77799999999999999999999998877 55776 667788889999999999999988775
No 27
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.82 E-value=2e-17 Score=150.29 Aligned_cols=473 Identities=13% Similarity=0.097 Sum_probs=298.1
Q ss_pred hhhHHHHHHHhhhcCChhHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCChhHHHHHhccCCC--CC------chHHH
Q 007400 52 AETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPV--KN------LFSYN 123 (605)
Q Consensus 52 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~------~~~~~ 123 (605)
-.++..+..-|..+....+|+..|+.+.+....++.-..---+...+.+.+.+.+|++.++-... |+ +...+
T Consensus 201 fsvl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~ 280 (840)
T KOG2003|consen 201 FSVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILN 280 (840)
T ss_pred HHHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHh
Confidence 33444444555555666667777766666655555442223344556666666666666554432 11 12333
Q ss_pred HHHHHHHccCChHHHHHHHhhcCC--CCceeHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhH--------HHHHH
Q 007400 124 NMLSGYANLGMMKHARNLFDNMAE--RDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSF--------AGILT 193 (605)
Q Consensus 124 ~li~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~--------~~ll~ 193 (605)
.+.-.+.+.|.++.|+..|+...+ |+..+-..|+-++..-|+-++..+.|.+|..-...||..-| ..++.
T Consensus 281 nigvtfiq~gqy~dainsfdh~m~~~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~ 360 (840)
T KOG2003|consen 281 NIGVTFIQAGQYDDAINSFDHCMEEAPNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLN 360 (840)
T ss_pred hcCeeEEecccchhhHhhHHHHHHhCccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHH
Confidence 334456777888888888877653 66665555566666678888888889888875555554433 11221
Q ss_pred HHhccCChHHHHHHHHHHHHhCCCCCh----hHHHHHHHHHHhcC---ChHHHHHHHhhcCCC--CcchHHHHHHHHHhc
Q 007400 194 ICVKLEELKLTRQVHGQVLVTGFLSNV----VISSSIVDAYAKCG---ELSDARRLFDETDAR--DVLTWTTMVSGYAKL 264 (605)
Q Consensus 194 ~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~--~~~~~~~li~~~~~~ 264 (605)
-..+.. .++.|.+.. +.+. .|-..++.--..-. -.+-..+.++.-... ....--.-...+.+.
T Consensus 361 eai~nd-------~lk~~ek~~-ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~ 432 (840)
T KOG2003|consen 361 EAIKND-------HLKNMEKEN-KADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKN 432 (840)
T ss_pred HHHhhH-------HHHHHHHhh-hhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhc
Confidence 111111 111121111 0010 01111111000000 001111111110000 000000112237899
Q ss_pred CChHHHHHHHhhCCCCChhhHHHHHH-----HHHh-CCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhcccchHHHHH
Q 007400 265 GDMESASKLFNEMPEKNPVSWTTLIA-----GYTR-NGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQ 338 (605)
Q Consensus 265 ~~~~~A~~~~~~~~~~~~~~~~~l~~-----~~~~-~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~ 338 (605)
|+++.|.+++.-..+.|..+-.+... -|.+ -.++..|.++-+...... +-+....+.-.......|++++|..
T Consensus 433 ~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~dka~~ 511 (840)
T KOG2003|consen 433 GDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLDKAAE 511 (840)
T ss_pred cCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHHHHHH
Confidence 99999999998887765443322221 2222 346777777766655432 2333333333334456799999999
Q ss_pred HHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCC--CCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC
Q 007400 339 VHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDN--KENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVK 416 (605)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 416 (605)
.+++.+...-......|+ +.-.+...|++++|++.|-.+.. ..+......+...|....+...|++++.+... +-
T Consensus 512 ~ykeal~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~s--li 588 (840)
T KOG2003|consen 512 FYKEALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANS--LI 588 (840)
T ss_pred HHHHHHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcc--cC
Confidence 999998765333333443 34457788999999999987652 23777888888899999999999999988776 45
Q ss_pred C-CHHHHHHHHHHHhccCcHHHHHHHHHHchHhhCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHHHHHHH
Q 007400 417 P-DKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKM-PYEHDSYLWNALH 494 (605)
Q Consensus 417 p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~l~ 494 (605)
| |+..+..|...|-+.|+-.+|.+++-.-- + -++-+.++...|...|....-+++++..|++. ..+|+..-|..++
T Consensus 589 p~dp~ilskl~dlydqegdksqafq~~ydsy-r-yfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmi 666 (840)
T KOG2003|consen 589 PNDPAILSKLADLYDQEGDKSQAFQCHYDSY-R-YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMI 666 (840)
T ss_pred CCCHHHHHHHHHHhhcccchhhhhhhhhhcc-c-ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHH
Confidence 5 67799999999999999999998876544 1 34556889999999999999999999999997 3689999998876
Q ss_pred HHH-HhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCch
Q 007400 495 GVC-RIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGR 538 (605)
Q Consensus 495 ~~~-~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 538 (605)
..| .+.|++.+|+++|+.+.+..|.+..++..|.+++...|..+
T Consensus 667 asc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl~d 711 (840)
T KOG2003|consen 667 ASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGLKD 711 (840)
T ss_pred HHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccchh
Confidence 655 67899999999999999999999999999999998888643
No 28
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.81 E-value=8.3e-16 Score=138.91 Aligned_cols=425 Identities=12% Similarity=0.121 Sum_probs=294.1
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHhh--hcCChhHH-HHHHHHHHHhCCCCCchhhHHHHHHHHHh
Q 007400 24 FLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCA--ESKSLKLG-KRVHLHLKLTQRKTPTTFLSNHLISMYFK 100 (605)
Q Consensus 24 ~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~--~~~~~~~a-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 100 (605)
++.++++|..+++.-+|+.|+..|+..+...-..+++.-+ .+.++.-| .+.|-.+...|..... + .+
T Consensus 122 L~kmIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~--s--------WK 191 (625)
T KOG4422|consen 122 LLKMISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTS--S--------WK 191 (625)
T ss_pred HHHHHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhcccccccccc--c--------cc
Confidence 3456778999999999999999999888888777776433 33333322 2233334333333322 2 24
Q ss_pred cCChhHHHHHhccCCCCCchHHHHHHHHHHccCChHHHHHHHhhcCC----CCceeHHHHHHHHHhcCChHHHHHHHHHH
Q 007400 101 CGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAE----RDVVSWNTMIIGYAKSGAVEEGLKFYKVL 176 (605)
Q Consensus 101 ~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m 176 (605)
.|++.+ ++-+..-.+..++..+|.++++--..+.|.+++++... -+..+||.+|.+-.-. .-.+++.+|
T Consensus 192 ~G~vAd---L~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~----~~K~Lv~EM 264 (625)
T KOG4422|consen 192 SGAVAD---LLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS----VGKKLVAEM 264 (625)
T ss_pred cccHHH---HHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh----ccHHHHHHH
Confidence 565544 44555556778999999999999999999999999874 3667788887664433 237889999
Q ss_pred HhCCCCCChhhHHHHHHHHhccCChHH----HHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHH-HHHHHhhcCC---
Q 007400 177 RRFSISCNEFSFAGILTICVKLEELKL----TRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSD-ARRLFDETDA--- 248 (605)
Q Consensus 177 ~~~~~~p~~~~~~~ll~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-a~~~~~~~~~--- 248 (605)
.+..+.||..|+|+++.+..+.|+++. |.+++.+|++.|+.|...+|..++..+++.++..+ +..++.++..
T Consensus 265 isqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~lt 344 (625)
T KOG4422|consen 265 ISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLT 344 (625)
T ss_pred HHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhc
Confidence 999999999999999999999998865 55788899999999999999999999999888754 4444444332
Q ss_pred -C--------CcchHHHHHHHHHhcCChHHHHHHHhhCCCC-----------ChhhHHHHHHHHHhCCChHHHHHHHHHH
Q 007400 249 -R--------DVLTWTTMVSGYAKLGDMESASKLFNEMPEK-----------NPVSWTTLIAGYTRNGLGQKALELFTRM 308 (605)
Q Consensus 249 -~--------~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~-----------~~~~~~~l~~~~~~~g~~~~a~~~~~~m 308 (605)
+ |...|...+..|....+.+.|.++..-+... ...-|..+....++....+.-..+|+.|
T Consensus 345 GK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~l 424 (625)
T KOG4422|consen 345 GKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDL 424 (625)
T ss_pred cCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 1 4456778888888999999998887665431 2234666777888889999999999999
Q ss_pred HHCCCCCChHHHHHHHHHHhcccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCCCCCcch--
Q 007400 309 MILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSML-- 386 (605)
Q Consensus 309 ~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-- 386 (605)
.-.-+-|+..+...++++....+.++-..+++..++..|.......-.-++..+++. ...|+...
T Consensus 425 VP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~-------------k~hp~tp~r~ 491 (625)
T KOG4422|consen 425 VPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARD-------------KLHPLTPERE 491 (625)
T ss_pred ccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcC-------------CCCCCChHHH
Confidence 988889999999999999999999999999999998887544443333333333322 11222221
Q ss_pred -HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHchHhhCCCCCHHHH---HHHH
Q 007400 387 -WNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHH---ACLI 462 (605)
Q Consensus 387 -~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~---~~l~ 462 (605)
+.....-|+ ..-.+.....-.+|.+..+ .....+..+..+.+.|..++|.+++..+.++..-.|..... ..++
T Consensus 492 Ql~~~~ak~a-ad~~e~~e~~~~R~r~~~~--~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~ 568 (625)
T KOG4422|consen 492 QLQVAFAKCA-ADIKEAYESQPIRQRAQDW--PATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELM 568 (625)
T ss_pred HHHHHHHHHH-HHHHHHHHhhHHHHHhccC--ChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHH
Confidence 111111111 1111222223334554333 34455666666778888888888888876444433433333 3556
Q ss_pred HHHHhcCChHHHHHHHHhC
Q 007400 463 ELLAQAGCSDQLMNQLEKM 481 (605)
Q Consensus 463 ~~~~~~g~~~~A~~~~~~~ 481 (605)
+.-.+....-.|...++-+
T Consensus 569 d~a~~~~spsqA~~~lQ~a 587 (625)
T KOG4422|consen 569 DSAKVSNSPSQAIEVLQLA 587 (625)
T ss_pred HHHHhcCCHHHHHHHHHHH
Confidence 6666777788888777766
No 29
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.80 E-value=4.9e-15 Score=134.01 Aligned_cols=425 Identities=14% Similarity=0.152 Sum_probs=294.7
Q ss_pred hhHHHHHHHhhhcCChhHHHHHHHHHHHhCCCCCchhhHHHHHHHHH--hcCChhH-HHHHhccCCC---CCchHHHHHH
Q 007400 53 ETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYF--KCGSDVD-ARKVFDKIPV---KNLFSYNNML 126 (605)
Q Consensus 53 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~g~~~~-a~~~~~~~~~---~~~~~~~~li 126 (605)
.+=+.+++. ..+|....+.-+|+.|...+.+.... .-..|+...+ ...++-- -.+.|-.|.. .+..+|
T Consensus 117 ~~E~nL~km-IS~~EvKDs~ilY~~m~~e~~~vS~k-vq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sW---- 190 (625)
T KOG4422|consen 117 ETENNLLKM-ISSREVKDSCILYERMRSENVDVSEK-VQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSW---- 190 (625)
T ss_pred cchhHHHHH-HhhcccchhHHHHHHHHhcCCCCCHH-HHHHHHHHHHhhcCCCCcchhHHHHhhcccccccccccc----
Confidence 455666665 46788899999999999998877666 5445544333 2223222 2334444442 344444
Q ss_pred HHHHccCChHHHHHHHhhcCCCCceeHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCChHHHHH
Q 007400 127 SGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQ 206 (605)
Q Consensus 127 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~ 206 (605)
+.|.+.+ ++-+...++..+|..||.++++-...+.|.++|++-.....+.+..+||.+|.+-+-. ..++
T Consensus 191 ----K~G~vAd---L~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~----~~K~ 259 (625)
T KOG4422|consen 191 ----KSGAVAD---LLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS----VGKK 259 (625)
T ss_pred ----ccccHHH---HHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh----ccHH
Confidence 3444443 4444555567899999999999999999999999999988999999999999875432 2388
Q ss_pred HHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhcCCCCcchHHHHHHHHHhcCChHHHHHHHhhCCCCChhhHH
Q 007400 207 VHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWT 286 (605)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 286 (605)
++.+|......||..|+|+++.+..+.|+++.|.
T Consensus 260 Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar---------------------------------------------- 293 (625)
T KOG4422|consen 260 LVAEMISQKMTPNLFTFNALLSCAAKFGKFEDAR---------------------------------------------- 293 (625)
T ss_pred HHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHH----------------------------------------------
Confidence 9999999999999999999999999999998887
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhcccchHHH-HHHHHHHH----HcCC----CCChhHHHH
Q 007400 287 TLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHG-KQVHGFLI----RTNF----RSNTIVMSS 357 (605)
Q Consensus 287 ~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a-~~~~~~~~----~~~~----~~~~~~~~~ 357 (605)
..|++++.+|++.|+.|...+|..+|..+++.++..+. ..++..+. ...+ +.+...|..
T Consensus 294 ------------~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~ 361 (625)
T KOG4422|consen 294 ------------KAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQS 361 (625)
T ss_pred ------------HHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHH
Confidence 45667777888888888888888888877777766442 23333332 1222 223445666
Q ss_pred HHHHHHhcCChHHHHHHHHhcCCC-------CC---cchHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 007400 358 LIDMYSKCGCLNDGRQVFDLTDNK-------EN---SMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILN 427 (605)
Q Consensus 358 l~~~~~~~g~~~~A~~~~~~~~~~-------~~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~ 427 (605)
.+..|.+..+.+-|.++-.-+... |+ ..-|..+....++....+.-..+|+.|+-.-+-|+..+...+++
T Consensus 362 AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lr 441 (625)
T KOG4422|consen 362 AMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLR 441 (625)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHH
Confidence 677777777777777766544322 11 12345566667777788888888888887777788888888888
Q ss_pred HHhccCcHHHHHHHHHHchHhhCCCCCHHHHHHHHHHHHhcC-Ch---H----------HHHHHHHh-------C-CCCC
Q 007400 428 ACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAG-CS---D----------QLMNQLEK-------M-PYEH 485 (605)
Q Consensus 428 ~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-~~---~----------~A~~~~~~-------~-~~~~ 485 (605)
+..-.|.++-.-++|..+. .+|...+......+...+++.. +. + -|..+++. + ....
T Consensus 442 A~~v~~~~e~ipRiw~D~~-~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~~~ 520 (625)
T KOG4422|consen 442 ALDVANRLEVIPRIWKDSK-EYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRAQDW 520 (625)
T ss_pred HHhhcCcchhHHHHHHHHH-HhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhccC
Confidence 8888888888888888887 5566666555555555555544 21 1 01122221 1 1234
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc---CCCCCc--hHHHHHHHHHhcCCchHHHHHHHHHHhCCCc
Q 007400 486 DSYLWNALHGVCRIHGNIDMGRKVVDQLIDQ---NPQSSA--THGLLSSIYSALGKGRLVEKVRQLINERQFK 553 (605)
Q Consensus 486 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~p~~~~--~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 553 (605)
.....+.++..+.+.|..++|-+++.-..+. .|..+. +...+.+.-.+.+....|..+++.+...+..
T Consensus 521 ~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n~~ 593 (625)
T KOG4422|consen 521 PATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFNLP 593 (625)
T ss_pred ChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCch
Confidence 5667777888889999999999999988654 443332 3346667777788888999999988776543
No 30
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.77 E-value=3e-13 Score=129.01 Aligned_cols=451 Identities=12% Similarity=0.121 Sum_probs=279.1
Q ss_pred hcCChhHHHHHhccCCC--C-CchHHHHHHHHHHccCChHHHHHHHhhcCC---CCceeHHHHHHHHHhcCChHHHHHHH
Q 007400 100 KCGSDVDARKVFDKIPV--K-NLFSYNNMLSGYANLGMMKHARNLFDNMAE---RDVVSWNTMIIGYAKSGAVEEGLKFY 173 (605)
Q Consensus 100 ~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~ 173 (605)
...+.++|.-++.+..+ | +.. |.-++++..-++.|..+++...+ .+...|-+-...--.+|+.+.+.+++
T Consensus 388 elE~~~darilL~rAveccp~s~d----LwlAlarLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~kii 463 (913)
T KOG0495|consen 388 ELEEPEDARILLERAVECCPQSMD----LWLALARLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKII 463 (913)
T ss_pred hccChHHHHHHHHHHHHhccchHH----HHHHHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHHH
Confidence 34444445555555443 1 111 22233444445555555554442 34444444444444555555555554
Q ss_pred HH----HHhCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCC--hhHHHHHHHHHHhcCChHHHHHHH----
Q 007400 174 KV----LRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSN--VVISSSIVDAYAKCGELSDARRLF---- 243 (605)
Q Consensus 174 ~~----m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~---- 243 (605)
.+ +...|+..+...|..=...|-..|..-.+..+....+..|+... ..+|..-...|.+.+.++-|..+|
T Consensus 464 ~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~al 543 (913)
T KOG0495|consen 464 DRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHAL 543 (913)
T ss_pred HHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHH
Confidence 43 23345555555555555555555555555555555554443221 234444444444444444444444
Q ss_pred ------------------------------hhcCCC---CcchHHHHHHHHHhcCChHHHHHHHhhCCC---CChhhHHH
Q 007400 244 ------------------------------DETDAR---DVLTWTTMVSGYAKLGDMESASKLFNEMPE---KNPVSWTT 287 (605)
Q Consensus 244 ------------------------------~~~~~~---~~~~~~~li~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~ 287 (605)
++.... ....|-.....+-..|+...|..++....+ .+...|-+
T Consensus 544 qvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwla 623 (913)
T KOG0495|consen 544 QVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLA 623 (913)
T ss_pred hhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHH
Confidence 444332 223344444445555666666666655543 13445666
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhcccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCC
Q 007400 288 LIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGC 367 (605)
Q Consensus 288 l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 367 (605)
.+.......+++.|..+|.+... ..|+...|.--+....-.++.++|.+++++.++.- +.-...|..+.+.+-+.++
T Consensus 624 avKle~en~e~eraR~llakar~--~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~f-p~f~Kl~lmlGQi~e~~~~ 700 (913)
T KOG0495|consen 624 AVKLEFENDELERARDLLAKARS--ISGTERVWMKSANLERYLDNVEEALRLLEEALKSF-PDFHKLWLMLGQIEEQMEN 700 (913)
T ss_pred HHHHhhccccHHHHHHHHHHHhc--cCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhC-CchHHHHHHHhHHHHHHHH
Confidence 66666666677777777766554 34566666555555555677777777777766652 4445667777777777777
Q ss_pred hHHHHHHHHhcCCC-CC-cchHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHc
Q 007400 368 LNDGRQVFDLTDNK-EN-SMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESM 445 (605)
Q Consensus 368 ~~~A~~~~~~~~~~-~~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 445 (605)
++.|++.|..-... |+ +..|-.+...--+.|..-+|..++++..-.+ +-|...|...++.-.+.|+.+.|..++.++
T Consensus 701 ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakA 779 (913)
T KOG0495|consen 701 IEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKA 779 (913)
T ss_pred HHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 77777777654432 43 3456666666666777777888887777653 225567777777777788888887777777
Q ss_pred hHhhCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHH
Q 007400 446 THDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHG 525 (605)
Q Consensus 446 ~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 525 (605)
.+ ..+.+...|..-+....+.++-....+.+.++. .|+.+...++..+....+++.|++-|.+++..+|++..+|.
T Consensus 780 LQ--ecp~sg~LWaEaI~le~~~~rkTks~DALkkce--~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa 855 (913)
T KOG0495|consen 780 LQ--ECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCE--HDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWA 855 (913)
T ss_pred HH--hCCccchhHHHHHHhccCcccchHHHHHHHhcc--CCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHH
Confidence 63 334445667777777777777777777777766 67777888888888889999999999999999999999999
Q ss_pred HHHHHHHhcCCchHHHHHHHHHHhCCCcCCCceeEEEEC
Q 007400 526 LLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIE 564 (605)
Q Consensus 526 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~s~~~~~ 564 (605)
.+...+.+.|.-++-.+++++.... .|.-|..|+.+.
T Consensus 856 ~fykfel~hG~eed~kev~~~c~~~--EP~hG~~W~avS 892 (913)
T KOG0495|consen 856 WFYKFELRHGTEEDQKEVLKKCETA--EPTHGELWQAVS 892 (913)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHhcc--CCCCCcHHHHHh
Confidence 9999999999999999999988764 344566676553
No 31
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.75 E-value=3.7e-13 Score=123.63 Aligned_cols=491 Identities=14% Similarity=0.118 Sum_probs=322.5
Q ss_pred CChhhHHHHHHHhhhcCChhHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCChhHHHHHhccCCC--CCc-hHHHHHH
Q 007400 50 LPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPV--KNL-FSYNNML 126 (605)
Q Consensus 50 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~-~~~~~li 126 (605)
.+...|..-.+-=..++++..|+.+|+..+...... .. .+...+.+=.++..+..|..++++... |-+ ..|--.+
T Consensus 71 ~~~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~-it-LWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ 148 (677)
T KOG1915|consen 71 LNMQVWIKYAQWEESQKEIQRARSVFERALDVDYRN-IT-LWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYI 148 (677)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhccccc-ch-HHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHH
Confidence 344455555555456667777777777766544222 22 566666666667777777777776653 222 2344444
Q ss_pred HHHHccCChHHHHHHHhhcC--CCCceeHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCChHHH
Q 007400 127 SGYANLGMMKHARNLFDNMA--ERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLT 204 (605)
Q Consensus 127 ~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a 204 (605)
..--..|++..|.++|++-. +|+...|.+.|..-.+-+.++.|..+|+...- +.|+..+|.-..+.-.+.|+...+
T Consensus 149 ymEE~LgNi~gaRqiferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~--~HP~v~~wikyarFE~k~g~~~~a 226 (677)
T KOG1915|consen 149 YMEEMLGNIAGARQIFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVL--VHPKVSNWIKYARFEEKHGNVALA 226 (677)
T ss_pred HHHHHhcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcHHHH
Confidence 44455677777777777644 47777777777777777777777777777765 557777777777777777777777
Q ss_pred HHHHHHHHHhCC--CCChhHHHHHHHHHHhcCChHHHHHHHhhcCCC-----CcchHHHHHHHHHhcCCh---HHHHHHH
Q 007400 205 RQVHGQVLVTGF--LSNVVISSSIVDAYAKCGELSDARRLFDETDAR-----DVLTWTTMVSGYAKLGDM---ESASKLF 274 (605)
Q Consensus 205 ~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~~~~~~~li~~~~~~~~~---~~A~~~~ 274 (605)
..+|+...+.-- ..+...+.+....-.++..++.|.-+|+-.... ....|..+...--+.|+. ++++--=
T Consensus 227 R~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~K 306 (677)
T KOG1915|consen 227 RSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGK 306 (677)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhh
Confidence 777776655311 112334444555555566677777776544332 123333333333333443 3333222
Q ss_pred hhC-----CCC---ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChH-------HHHHHHHHH---hcccchHHH
Q 007400 275 NEM-----PEK---NPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQH-------TFSSCLCAC---ASIVSLKHG 336 (605)
Q Consensus 275 ~~~-----~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~-------~~~~ll~~~---~~~~~~~~a 336 (605)
+++ ... |-.+|--.+..-...|+.+...++|++.... ++|-.. .|.-+--+| ....+++.+
T Consensus 307 Rk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ert 385 (677)
T KOG1915|consen 307 RKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERT 385 (677)
T ss_pred hhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 222 222 4556666777777789999999999998875 566331 222222222 356789999
Q ss_pred HHHHHHHHHcCCCCChhHHHHH----HHHHHhcCChHHHHHHHHhcC-CCCCcchHHHHHHHHHHcCCHHHHHHHHHHHH
Q 007400 337 KQVHGFLIRTNFRSNTIVMSSL----IDMYSKCGCLNDGRQVFDLTD-NKENSMLWNTMISALTQHGYDEQAIRLFHDMV 411 (605)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~l----~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 411 (605)
.++++..++. +|....+|..+ .....++.++..|++++.... .-|-..+|...|..-.+.++++.+..+|++.+
T Consensus 386 r~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfl 464 (677)
T KOG1915|consen 386 RQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFL 464 (677)
T ss_pred HHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 9999999883 46666666654 344457889999999998644 55788899999999999999999999999999
Q ss_pred HCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHchHhhCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhCC-CCCCHHH
Q 007400 412 RSSVKP-DKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMP-YEHDSYL 489 (605)
Q Consensus 412 ~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~ 489 (605)
+. .| |..+|......-...|+.+.|..+|+-+.....+......+...++.-...|.+++|..+++++. ..+-..+
T Consensus 465 e~--~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~kv 542 (677)
T KOG1915|consen 465 EF--SPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVKV 542 (677)
T ss_pred hc--ChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccchH
Confidence 94 55 67899998888888999999999999998554444456677778888889999999999999873 3344557
Q ss_pred HHHHHHHHH-----hcC-----------CHHHHHHHHHHHHhc----CCCCC--chHHHHHHHHHhcCCchHHHHHHHHH
Q 007400 490 WNALHGVCR-----IHG-----------NIDMGRKVVDQLIDQ----NPQSS--ATHGLLSSIYSALGKGRLVEKVRQLI 547 (605)
Q Consensus 490 ~~~l~~~~~-----~~g-----------~~~~A~~~~~~~~~~----~p~~~--~~~~~l~~~~~~~g~~~~a~~~~~~~ 547 (605)
|-..+..-. ..+ +...|..+|+++... .|... ..+..+-++-...|.-.+...+-.+|
T Consensus 543 WisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~~~k~~~~KeeR~~LLEaw~~~E~~~G~~~d~~~V~s~m 622 (677)
T KOG1915|consen 543 WISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERANTYLKESTPKEERLMLLEAWKNMEETFGTEGDVERVQSKM 622 (677)
T ss_pred HHhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHhc
Confidence 776665443 334 678899999998765 23111 22334455555667777776666666
Q ss_pred H
Q 007400 548 N 548 (605)
Q Consensus 548 ~ 548 (605)
.
T Consensus 623 P 623 (677)
T KOG1915|consen 623 P 623 (677)
T ss_pred c
Confidence 4
No 32
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.74 E-value=3.1e-12 Score=122.21 Aligned_cols=386 Identities=11% Similarity=0.082 Sum_probs=285.4
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHH----HhCCCCChhHHHHHHHHHHh
Q 007400 157 IIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVL----VTGFLSNVVISSSIVDAYAK 232 (605)
Q Consensus 157 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~~~~~l~~~~~~ 232 (605)
..++.+..-++.|..++++.++ .++-+...|.+....--..|+.+...+++++-+ ..|+..+..-|-.=...+-.
T Consensus 413 wlAlarLetYenAkkvLNkaRe-~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~ 491 (913)
T KOG0495|consen 413 WLALARLETYENAKKVLNKARE-IIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACED 491 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh-hCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhh
Confidence 3455666677888888888776 455677777777777777788887777765543 45677777777777777777
Q ss_pred cCChHHHHHHHhhcCCC------CcchHHHHHHHHHhcCChHHHHHHHhhCCC---CChhhHHHHHHHHHhCCChHHHHH
Q 007400 233 CGELSDARRLFDETDAR------DVLTWTTMVSGYAKLGDMESASKLFNEMPE---KNPVSWTTLIAGYTRNGLGQKALE 303 (605)
Q Consensus 233 ~g~~~~a~~~~~~~~~~------~~~~~~~li~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~ 303 (605)
.|..-.+..+......- -..+|..-...|.+.+.++-|..+|....+ .+...|...+..--..|..+....
T Consensus 492 agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~A 571 (913)
T KOG0495|consen 492 AGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEA 571 (913)
T ss_pred cCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHH
Confidence 77777776666655432 235777777888888888888888887765 255567777777677788888888
Q ss_pred HHHHHHHCCCCCChHHHHHHHHHHhcccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCC-CC
Q 007400 304 LFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDN-KE 382 (605)
Q Consensus 304 ~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~ 382 (605)
+|++.... ++-....+.......-..|+...|..++..+.+.+ +.+..++-.-+.......+++.|+.+|.+... .|
T Consensus 572 llqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~-pnseeiwlaavKle~en~e~eraR~llakar~~sg 649 (913)
T KOG0495|consen 572 LLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEAN-PNSEEIWLAAVKLEFENDELERARDLLAKARSISG 649 (913)
T ss_pred HHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCC
Confidence 88888875 23344455555566677789999999998888876 55778888888888888999999999987664 36
Q ss_pred CcchHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCcHHHHHHHHHHchHhhCCCCC-HHHHHH
Q 007400 383 NSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKI-TLAVILNACTHSGLVQEGLTYFESMTHDLGIIPN-QEHHAC 460 (605)
Q Consensus 383 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~ 460 (605)
+...|.--+....-.++.++|.+++++.++ .-|+.. .|..+...+.+.++.+.|...|..=. ..-|+ +..|-.
T Consensus 650 TeRv~mKs~~~er~ld~~eeA~rllEe~lk--~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~---k~cP~~ipLWll 724 (913)
T KOG0495|consen 650 TERVWMKSANLERYLDNVEEALRLLEEALK--SFPDFHKLWLMLGQIEEQMENIEMAREAYLQGT---KKCPNSIPLWLL 724 (913)
T ss_pred cchhhHHHhHHHHHhhhHHHHHHHHHHHHH--hCCchHHHHHHHhHHHHHHHHHHHHHHHHHhcc---ccCCCCchHHHH
Confidence 777887777777778888999999988888 567754 78888888888888888888887655 23344 677888
Q ss_pred HHHHHHhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc----------------
Q 007400 461 LIELLAQAGCSDQLMNQLEKM--PYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSA---------------- 522 (605)
Q Consensus 461 l~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~---------------- 522 (605)
|.+.-.+.|.+.+|..++++. ..+.+...|...+..-.+.|+.+.|..+..++++..|.+..
T Consensus 725 LakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkT 804 (913)
T KOG0495|consen 725 LAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKT 804 (913)
T ss_pred HHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccch
Confidence 888888888999999999876 34567788888888888999999999888888877665443
Q ss_pred --------------hHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 007400 523 --------------THGLLSSIYSALGKGRLVEKVRQLINER 550 (605)
Q Consensus 523 --------------~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 550 (605)
.....+..+....++++|.+-|.+....
T Consensus 805 ks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~ 846 (913)
T KOG0495|consen 805 KSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKK 846 (913)
T ss_pred HHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 3445555555666666666666655443
No 33
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.72 E-value=2.3e-12 Score=127.97 Aligned_cols=520 Identities=13% Similarity=0.091 Sum_probs=275.1
Q ss_pred hcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHhhhcCChhHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCChhHHH
Q 007400 29 SKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDAR 108 (605)
Q Consensus 29 ~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 108 (605)
-.|++++|.+++.+..+.. +-....|..|...|-+.|+.+++...+-.+....+. +...|..+.......|.++.|.
T Consensus 151 arg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~--d~e~W~~ladls~~~~~i~qA~ 227 (895)
T KOG2076|consen 151 ARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPK--DYELWKRLADLSEQLGNINQAR 227 (895)
T ss_pred HhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCC--ChHHHHHHHHHHHhcccHHHHH
Confidence 3499999999999999876 667889999999999999999998876555544433 3347888888888899999999
Q ss_pred HHhccCCCCCc---hHHHHHHHHHHccCChHHHHHHHhhcCCCCc--------eeHHHHHHHHHhcCChHHHHHHHHHHH
Q 007400 109 KVFDKIPVKNL---FSYNNMLSGYANLGMMKHARNLFDNMAERDV--------VSWNTMIIGYAKSGAVEEGLKFYKVLR 177 (605)
Q Consensus 109 ~~~~~~~~~~~---~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~--------~~~~~li~~~~~~~~~~~a~~~~~~m~ 177 (605)
-+|.+..+.++ ..+---...|-+.|+...|.+.|.++..-++ ..-...+..+...++.+.|++.++...
T Consensus 228 ~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~ 307 (895)
T KOG2076|consen 228 YCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGAL 307 (895)
T ss_pred HHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 99998875333 3333445667777877777777777653211 111122334444454455555555544
Q ss_pred hC-CCCCChhhHHHHHHHHhccCChHHHHHHHHHHHH-------------------------------------------
Q 007400 178 RF-SISCNEFSFAGILTICVKLEELKLTRQVHGQVLV------------------------------------------- 213 (605)
Q Consensus 178 ~~-~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~------------------------------------------- 213 (605)
.. +-..+...++.++..+.+...++.+.........
T Consensus 308 s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL 387 (895)
T KOG2076|consen 308 SKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICL 387 (895)
T ss_pred hhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhh
Confidence 31 1112333444444444444444444444333332
Q ss_pred ------------------hC--CCCChhHHHHHHHHHHhcCChHHHHHHHhhcCCC----CcchHHHHHHHHHhcCChHH
Q 007400 214 ------------------TG--FLSNVVISSSIVDAYAKCGELSDARRLFDETDAR----DVLTWTTMVSGYAKLGDMES 269 (605)
Q Consensus 214 ------------------~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~~~~li~~~~~~~~~~~ 269 (605)
.. +.-+...|.-+..+|...|++.+|..+|..+... +...|-.+..+|...|.+++
T Consensus 388 ~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~ 467 (895)
T KOG2076|consen 388 VHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEE 467 (895)
T ss_pred hcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHH
Confidence 22 1222334444455555555555555555555432 33445555555555555555
Q ss_pred HHHHHhhCCCC---ChhhHHHHHHHHHhCCChHHHHHHHHHHHH--------CCCCCChHHHHHHHHHHhcccchHHHHH
Q 007400 270 ASKLFNEMPEK---NPVSWTTLIAGYTRNGLGQKALELFTRMMI--------LRIRPNQHTFSSCLCACASIVSLKHGKQ 338 (605)
Q Consensus 270 A~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~--------~g~~p~~~~~~~ll~~~~~~~~~~~a~~ 338 (605)
|...+..+... +...--.|...+.+.|++++|.+++..+.. .+..|+..........+...|+.++-..
T Consensus 468 A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~ 547 (895)
T KOG2076|consen 468 AIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFIN 547 (895)
T ss_pred HHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 55555554432 222333344445555555555555554321 1122233333333334444455444444
Q ss_pred HHHHHHHcCC-----CC-----------------ChhHHHHHHHHHHhcCChHHHHHHHHhcC------CC-CCc----c
Q 007400 339 VHGFLIRTNF-----RS-----------------NTIVMSSLIDMYSKCGCLNDGRQVFDLTD------NK-ENS----M 385 (605)
Q Consensus 339 ~~~~~~~~~~-----~~-----------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~------~~-~~~----~ 385 (605)
+...++.... -| .......++.+-.+.++......-...-. .. -+. .
T Consensus 548 t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsiddwfe 627 (895)
T KOG2076|consen 548 TASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLSIDDWFE 627 (895)
T ss_pred HHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCcHHHHHH
Confidence 3333332110 00 00000111111111111111000000000 00 011 1
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHH---H-HHHHHHHHhccCcHHHHHHHHHHchHhhCCCCC---HHH
Q 007400 386 LWNTMISALTQHGYDEQAIRLFHDMVRSSVKP-DKI---T-LAVILNACTHSGLVQEGLTYFESMTHDLGIIPN---QEH 457 (605)
Q Consensus 386 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~---~-~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~---~~~ 457 (605)
.+.-++..+++.+++++|+.+...+.....-- +.. . -...+.++...+++..|...++.+....+...+ ...
T Consensus 628 l~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~~q~~l 707 (895)
T KOG2076|consen 628 LFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFYLDVYQLNL 707 (895)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhHHHHH
Confidence 23446667888899999999888887654211 221 2 233445666788899999888888755333322 223
Q ss_pred HHHHHHHHHh-----------------------------------cCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHH--
Q 007400 458 HACLIELLAQ-----------------------------------AGCSDQLMNQLEKM-PYEHD-SYLWNALHGVCR-- 498 (605)
Q Consensus 458 ~~~l~~~~~~-----------------------------------~g~~~~A~~~~~~~-~~~~~-~~~~~~l~~~~~-- 498 (605)
|+.....+.+ ++.+..|+..+-+. ...|| +.+-..++.++.
T Consensus 708 ~n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~~~pd~Pl~nl~lglafih~ 787 (895)
T KOG2076|consen 708 WNLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFRQNPDSPLINLCLGLAFIHL 787 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhhccchHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHH
Confidence 3422222222 33444555444332 12233 222222222221
Q ss_pred --------hcCCHHHHHHHHHHHHhcCC--CCCchHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 007400 499 --------IHGNIDMGRKVVDQLIDQNP--QSSATHGLLSSIYSALGKGRLVEKVRQLINERQ 551 (605)
Q Consensus 499 --------~~g~~~~A~~~~~~~~~~~p--~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 551 (605)
++-.+-+++.++.+-.++.. +...+++.+|.+|-..|-..-|..+|+++++..
T Consensus 788 a~qr~v~~Rh~~i~qG~afL~RY~~lR~~~~~QEa~YNigRayh~~gl~~LA~~YYekvL~~~ 850 (895)
T KOG2076|consen 788 ALQRRVSNRHAQIAQGFAFLKRYKELRRCEEKQEAFYNIGRAYHQIGLVHLAVSYYEKVLEVS 850 (895)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhCCC
Confidence 12234566777776666632 245788899999999999999999999998653
No 34
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.71 E-value=3e-17 Score=153.72 Aligned_cols=258 Identities=14% Similarity=0.148 Sum_probs=114.2
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHCCCCCChHHH-HHHHHHHhcccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhc
Q 007400 287 TLIAGYTRNGLGQKALELFTRMMILRIRPNQHTF-SSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKC 365 (605)
Q Consensus 287 ~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~-~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 365 (605)
.+...+.+.|++++|++++++......+|+...| ..+...+...++++.|...++++...+ +.++..+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~-~~~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD-KANPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccc-ccc
Confidence 3466778889999999999665544323444444 444556667889999999999998776 3366677777777 788
Q ss_pred CChHHHHHHHHhcCC-CCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHhccCcHHHHHHHHH
Q 007400 366 GCLNDGRQVFDLTDN-KENSMLWNTMISALTQHGYDEQAIRLFHDMVRSS-VKPDKITLAVILNACTHSGLVQEGLTYFE 443 (605)
Q Consensus 366 g~~~~A~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 443 (605)
+++++|.+++...-. .+++..+...+..+...++++++..+++++.... ..++...|..+...+.+.|+.++|...++
T Consensus 91 ~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~ 170 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYR 170 (280)
T ss_dssp ---------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred ccccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 999999998876543 3567778888899999999999999999987643 23466788889999999999999999999
Q ss_pred HchHhhCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 007400 444 SMTHDLGIIPN-QEHHACLIELLAQAGCSDQLMNQLEKMP--YEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQS 520 (605)
Q Consensus 444 ~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 520 (605)
++. ...|+ ......++..+...|+.+++.++++... .+.|+..|..++.++...|+.++|+..|+++.+..|+|
T Consensus 171 ~al---~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d 247 (280)
T PF13429_consen 171 KAL---ELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDD 247 (280)
T ss_dssp HHH---HH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-
T ss_pred HHH---HcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccccccccc
Confidence 998 44675 7788899999999999999888877652 24566778899999999999999999999999999999
Q ss_pred CchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 007400 521 SATHGLLSSIYSALGKGRLVEKVRQLINE 549 (605)
Q Consensus 521 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 549 (605)
+.....+++++...|+.++|.++++++.+
T Consensus 248 ~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 248 PLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HHHHHHHHHHHT-----------------
T ss_pred ccccccccccccccccccccccccccccc
Confidence 99999999999999999999999987754
No 35
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.69 E-value=7.6e-14 Score=128.65 Aligned_cols=215 Identities=13% Similarity=0.095 Sum_probs=177.6
Q ss_pred hcccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcC--CCCCcchHHHHHHHHHHcCCHHHHHH
Q 007400 328 ASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTD--NKENSMLWNTMISALTQHGYDEQAIR 405 (605)
Q Consensus 328 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~ 405 (605)
.-.|+.-.+..-|+..++.. +.+...|--+..+|....+.++....|+... .+.|+.+|.--.+.+.-.+++++|..
T Consensus 337 fL~g~~~~a~~d~~~~I~l~-~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~a 415 (606)
T KOG0547|consen 337 FLKGDSLGAQEDFDAAIKLD-PAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIA 415 (606)
T ss_pred hhcCCchhhhhhHHHHHhcC-cccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHH
Confidence 34678889999999998876 3344447788889999999999999998765 23478889888888889999999999
Q ss_pred HHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHchHhhCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhC-CC
Q 007400 406 LFHDMVRSSVKPD-KITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKM-PY 483 (605)
Q Consensus 406 ~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~ 483 (605)
-|++.++ +.|+ ...|..+.-+..+.+.+++++..|++..+ .++-.++.|+.....+..++++++|.+.|+.. ..
T Consensus 416 DF~Kai~--L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kk--kFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~L 491 (606)
T KOG0547|consen 416 DFQKAIS--LDPENAYAYIQLCCALYRQHKIAESMKTFEEAKK--KFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIEL 491 (606)
T ss_pred HHHHHhh--cChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhh
Confidence 9999999 6775 46888888888899999999999999984 44445889999999999999999999999875 23
Q ss_pred CCC---------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHH
Q 007400 484 EHD---------SYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLIN 548 (605)
Q Consensus 484 ~~~---------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 548 (605)
+|+ +.+...++..- -.+++.+|..++.++++++|....+|..|+.+..+.|+.++|+++|++..
T Consensus 492 E~~~~~~~v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 492 EPREHLIIVNAAPLVHKALLVLQ-WKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred ccccccccccchhhhhhhHhhhc-hhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 333 22333333322 34899999999999999999999999999999999999999999998764
No 36
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.67 E-value=1.4e-11 Score=113.55 Aligned_cols=449 Identities=12% Similarity=0.086 Sum_probs=336.3
Q ss_pred hHHHHHHHHHhcCChhHHHHHhccCCC---CCchHHHHHHHHHHccCChHHHHHHHhhcCC--CCc-eeHHHHHHHHHhc
Q 007400 90 LSNHLISMYFKCGSDVDARKVFDKIPV---KNLFSYNNMLSGYANLGMMKHARNLFDNMAE--RDV-VSWNTMIIGYAKS 163 (605)
Q Consensus 90 ~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~--~~~-~~~~~li~~~~~~ 163 (605)
.+-....-=...+++..|.++|++... .++..|.-.+..-.+...+..|..+|++... |-+ ..|...+..--..
T Consensus 75 ~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~L 154 (677)
T KOG1915|consen 75 VWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEML 154 (677)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHh
Confidence 344444445567899999999999875 5677888899999999999999999998764 322 3455555555567
Q ss_pred CChHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHH
Q 007400 164 GAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLF 243 (605)
Q Consensus 164 ~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 243 (605)
|+...|.++|+...+ ..|+...|.+.|+.-.+-...+.|..+++..+- +.|++..|-.....-.++|+...|..+|
T Consensus 155 gNi~gaRqiferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~--~HP~v~~wikyarFE~k~g~~~~aR~Vy 230 (677)
T KOG1915|consen 155 GNIAGARQIFERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVL--VHPKVSNWIKYARFEEKHGNVALARSVY 230 (677)
T ss_pred cccHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 999999999999987 779999999999999999999999999999875 4689999999999999999999999999
Q ss_pred hhcCCC--C----cchHHHHHHHHHhcCChHHHHHHHhhCCC--C---ChhhHHHHHHHHHhCCChHHHHHH--------
Q 007400 244 DETDAR--D----VLTWTTMVSGYAKLGDMESASKLFNEMPE--K---NPVSWTTLIAGYTRNGLGQKALEL-------- 304 (605)
Q Consensus 244 ~~~~~~--~----~~~~~~li~~~~~~~~~~~A~~~~~~~~~--~---~~~~~~~l~~~~~~~g~~~~a~~~-------- 304 (605)
+..... | ...+.++..--.++..++.|.-+|+-..+ | ....|..+...--+-|+.......
T Consensus 231 erAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~q 310 (677)
T KOG1915|consen 231 ERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQ 310 (677)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhH
Confidence 887653 2 23444555555567778888888776543 1 234455555444455665544433
Q ss_pred HHHHHHCCCCCChHHHHHHHHHHhcccchHHHHHHHHHHHHcCCCCChh-HHHHHHH--------HHHhcCChHHHHHHH
Q 007400 305 FTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTI-VMSSLID--------MYSKCGCLNDGRQVF 375 (605)
Q Consensus 305 ~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~--------~~~~~g~~~~A~~~~ 375 (605)
|+.+... -+-|-.++--.++.-...|+.+...++++.++..-.+.+.. .|...|- .-....+.+.+.++|
T Consensus 311 YE~~v~~-np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vy 389 (677)
T KOG1915|consen 311 YEKEVSK-NPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVY 389 (677)
T ss_pred HHHHHHh-CCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 2333333 25566777777888888899999999999998764332211 1211111 113467889999999
Q ss_pred HhcCCC-C-Ccch----HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHchHhh
Q 007400 376 DLTDNK-E-NSML----WNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDL 449 (605)
Q Consensus 376 ~~~~~~-~-~~~~----~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 449 (605)
+...+- | ...| |-.......+..+...|.+++...+. ..|-..+|...|..-.+.++++.+..+|++..
T Consensus 390 q~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG--~cPK~KlFk~YIelElqL~efDRcRkLYEkfl--- 464 (677)
T KOG1915|consen 390 QACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIG--KCPKDKLFKGYIELELQLREFDRCRKLYEKFL--- 464 (677)
T ss_pred HHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhc--cCCchhHHHHHHHHHHHHhhHHHHHHHHHHHH---
Confidence 864421 2 2333 44444455678899999999988775 78999999999999999999999999999998
Q ss_pred CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchH
Q 007400 450 GIIPN-QEHHACLIELLAQAGCSDQLMNQLEKMPYEHD----SYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATH 524 (605)
Q Consensus 450 ~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 524 (605)
...|. -.+|......-...|+.++|..+|+-...+|. ...|.+.+..-...|.++.|..+|++.++..+ +...|
T Consensus 465 e~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~-h~kvW 543 (677)
T KOG1915|consen 465 EFSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQ-HVKVW 543 (677)
T ss_pred hcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcc-cchHH
Confidence 56665 67888888888899999999999998754553 34677777777889999999999999999988 66688
Q ss_pred HHHHHHHH-----hcC-----------CchHHHHHHHHHHh
Q 007400 525 GLLSSIYS-----ALG-----------KGRLVEKVRQLINE 549 (605)
Q Consensus 525 ~~l~~~~~-----~~g-----------~~~~a~~~~~~~~~ 549 (605)
...+..-. ..| +...|..+|+.+..
T Consensus 544 isFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~ 584 (677)
T KOG1915|consen 544 ISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERANT 584 (677)
T ss_pred HhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHHH
Confidence 88877666 344 55578888887743
No 37
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.67 E-value=2e-13 Score=135.36 Aligned_cols=312 Identities=13% Similarity=0.127 Sum_probs=187.5
Q ss_pred CChHHHHHHHhhcCCC---CcchHHHHHHHHHhcCChHHHHHHHhhC---CCCChhhHHHHHHHHHhCCChHHHHHHHHH
Q 007400 234 GELSDARRLFDETDAR---DVLTWTTMVSGYAKLGDMESASKLFNEM---PEKNPVSWTTLIAGYTRNGLGQKALELFTR 307 (605)
Q Consensus 234 g~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~A~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 307 (605)
|++++|.+++.++... +...|..|...|-..|+.+++...+-.. ...|...|..+.....+.|++++|.-.|.+
T Consensus 153 g~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~r 232 (895)
T KOG2076|consen 153 GDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCYSR 232 (895)
T ss_pred CCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 4444444444444432 2234444444444444444444433222 122445555555555555666666666655
Q ss_pred HHHCCCCCChHHHHHHHHHHhcccchHHHHHHHHHHHHcCCCCChhHHH----HHHHHHHhcCChHHHHHHHHhcCC---
Q 007400 308 MMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMS----SLIDMYSKCGCLNDGRQVFDLTDN--- 380 (605)
Q Consensus 308 m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~----~l~~~~~~~g~~~~A~~~~~~~~~--- 380 (605)
..+.. +++...+---...|-+.|+...|..-+.++.....+.+..-+. ..++.+...++-+.|.+.++....
T Consensus 233 AI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~ 311 (895)
T KOG2076|consen 233 AIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEK 311 (895)
T ss_pred HHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhcc
Confidence 55542 3333333334445555566666665555555544322222222 223444455555666665554332
Q ss_pred -CCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHC---------------------------CCCCCHHHHHHHHHHHhcc
Q 007400 381 -KENSMLWNTMISALTQHGYDEQAIRLFHDMVRS---------------------------SVKPDKITLAVILNACTHS 432 (605)
Q Consensus 381 -~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~---------------------------~~~p~~~~~~~l~~~~~~~ 432 (605)
..+...+++++..+.+...++.|......+... ++.++... ..+.-++.+.
T Consensus 312 ~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v-~rl~icL~~L 390 (895)
T KOG2076|consen 312 DEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRV-IRLMICLVHL 390 (895)
T ss_pred ccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchh-HhHhhhhhcc
Confidence 123345666666666666666666666555541 12223223 1222333344
Q ss_pred CcHHHHHHHHHHchHhhCCCC--CHHHHHHHHHHHHhcCChHHHHHHHHhCCCC---CCHHHHHHHHHHHHhcCCHHHHH
Q 007400 433 GLVQEGLTYFESMTHDLGIIP--NQEHHACLIELLAQAGCSDQLMNQLEKMPYE---HDSYLWNALHGVCRIHGNIDMGR 507 (605)
Q Consensus 433 g~~~~a~~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~ 507 (605)
...+....+..... +..+.| +...|..+.++|...|++..|+.++..+... .+..+|..++.+|...|.+++|.
T Consensus 391 ~~~e~~e~ll~~l~-~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~ 469 (895)
T KOG2076|consen 391 KERELLEALLHFLV-EDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAI 469 (895)
T ss_pred cccchHHHHHHHHH-HhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHH
Confidence 44344444444343 335444 3789999999999999999999999987422 34678999999999999999999
Q ss_pred HHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHH
Q 007400 508 KVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLIN 548 (605)
Q Consensus 508 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 548 (605)
+.|++++...|++..+...|+.++.+.|+.++|.+++..+.
T Consensus 470 e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~ 510 (895)
T KOG2076|consen 470 EFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQII 510 (895)
T ss_pred HHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhccc
Confidence 99999999999999999999999999999999999998765
No 38
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.67 E-value=2.4e-12 Score=121.26 Aligned_cols=262 Identities=11% Similarity=0.042 Sum_probs=209.0
Q ss_pred ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhcccchHHHHHHHHHHHHcCCCCChhHHHHHHH
Q 007400 281 NPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLID 360 (605)
Q Consensus 281 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 360 (605)
++.....-..-+...+++.+..++.+...+.. +++...+..-|.++...|+..+-..+-..+++.- |..+.+|-++..
T Consensus 243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg~ 320 (611)
T KOG1173|consen 243 NLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVGC 320 (611)
T ss_pred cHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHHH
Confidence 55556666777888899999999999888753 5666666666677888888777777777777664 667788889998
Q ss_pred HHHhcCChHHHHHHHHhcCC--CCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHH
Q 007400 361 MYSKCGCLNDGRQVFDLTDN--KENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPD-KITLAVILNACTHSGLVQE 437 (605)
Q Consensus 361 ~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~ 437 (605)
.|.-.|+..+|++.|.+... +.-...|-.+...|+-.|..++|+..+...-+. -|. ...+..+.--|.+.++.+.
T Consensus 321 YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl--~~G~hlP~LYlgmey~~t~n~kL 398 (611)
T KOG1173|consen 321 YYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL--MPGCHLPSLYLGMEYMRTNNLKL 398 (611)
T ss_pred HHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh--ccCCcchHHHHHHHHHHhccHHH
Confidence 89889999999999986543 224568999999999999999999998887763 332 2344455566888899999
Q ss_pred HHHHHHHchHhhCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHhCC--------CCC-CHHHHHHHHHHHHhcCCHHHHH
Q 007400 438 GLTYFESMTHDLGIIPN-QEHHACLIELLAQAGCSDQLMNQLEKMP--------YEH-DSYLWNALHGVCRIHGNIDMGR 507 (605)
Q Consensus 438 a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--------~~~-~~~~~~~l~~~~~~~g~~~~A~ 507 (605)
|..+|.++. ++.|+ +...+.+.-.....+.+.+|..+|+... ..+ -..+++.|+.+|++.+.+++|+
T Consensus 399 Ae~Ff~~A~---ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI 475 (611)
T KOG1173|consen 399 AEKFFKQAL---AIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAI 475 (611)
T ss_pred HHHHHHHHH---hcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHH
Confidence 999999988 77776 6678888888888899999999887642 111 2446788999999999999999
Q ss_pred HHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 007400 508 KVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINE 549 (605)
Q Consensus 508 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 549 (605)
..+++++.+.|.++.++..++-+|...|+++.|++.|.+.+-
T Consensus 476 ~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~ 517 (611)
T KOG1173|consen 476 DYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALA 517 (611)
T ss_pred HHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999987754
No 39
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.66 E-value=2.5e-13 Score=133.99 Aligned_cols=398 Identities=11% Similarity=0.060 Sum_probs=225.2
Q ss_pred CCceeHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHH
Q 007400 148 RDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIV 227 (605)
Q Consensus 148 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 227 (605)
+++.+|..++.+-..+|+.+.|..++..|++.|.+.+.+-|..++-+ .++...+..++.-|...|+.|+..|+..-+
T Consensus 202 ~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyv 278 (1088)
T KOG4318|consen 202 PTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYV 278 (1088)
T ss_pred CChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHH
Confidence 67888999999999999999999999999999999999988888765 788999999999999999999999987766
Q ss_pred HHHHhcCChHHHH------------------------HHHhh---------cCCC-------CcchHHHHHHHHHhcCCh
Q 007400 228 DAYAKCGELSDAR------------------------RLFDE---------TDAR-------DVLTWTTMVSGYAKLGDM 267 (605)
Q Consensus 228 ~~~~~~g~~~~a~------------------------~~~~~---------~~~~-------~~~~~~~li~~~~~~~~~ 267 (605)
..+..+|....+. +.++. .+++ ...+|...+.. ..+|+-
T Consensus 279 ip~l~N~~t~~~~e~sq~~hg~tAavrsaa~rg~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~l-~hQgk~ 357 (1088)
T KOG4318|consen 279 IPQLSNGQTKYGEEGSQLAHGFTAAVRSAACRGLLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEKL-RHQGKG 357 (1088)
T ss_pred HhhhcchhhhhcccccchhhhhhHHHHHHHhcccHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHHHH-HHcCCC
Confidence 6555543321111 00000 0000 00111111111 001111
Q ss_pred HHH--------------------------HHHHhhCC---------------------------------CCCh------
Q 007400 268 ESA--------------------------SKLFNEMP---------------------------------EKNP------ 282 (605)
Q Consensus 268 ~~A--------------------------~~~~~~~~---------------------------------~~~~------ 282 (605)
++. ...|.+.. .||.
T Consensus 358 e~veqlvg~l~npt~r~s~~~V~a~~~~lrqyFrr~e~~~~~~i~~~~qgls~~l~se~tp~vsell~~lrkns~lr~lv 437 (1088)
T KOG4318|consen 358 EEVEQLVGQLLNPTLRDSGQNVDAFGALLRQYFRRIERHICSRIYYAGQGLSLNLNSEDTPRVSELLENLRKNSFLRQLV 437 (1088)
T ss_pred chHHHHHhhhcCCccccCcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhchhhhHHHHHHHHHhCcchHHHHHh
Confidence 111 11111110 0000
Q ss_pred ----------------------hhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhcccchHHHHHHH
Q 007400 283 ----------------------VSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVH 340 (605)
Q Consensus 283 ----------------------~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 340 (605)
..-+.++..++..-+..+++..-+.....-+ + ..|..++.-+......+.|..+.
T Consensus 438 ~Lss~Eler~he~~~~~~h~irdi~~ql~l~l~se~n~lK~l~~~ekye~~lf-~--g~ya~Li~l~~~hdkle~Al~~~ 514 (1088)
T KOG4318|consen 438 GLSSTELERSHEPWPLIAHLIRDIANQLHLTLNSEYNKLKILCDEEKYEDLLF-A--GLYALLIKLMDLHDKLEYALSFV 514 (1088)
T ss_pred hhhHHHHhcccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-h--hHHHHHhhhHHHHHHHHHHHhch
Confidence 0123344445554444555543333332211 1 45667777777777777777776
Q ss_pred HHHHHc--CCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCCC----CCc-chHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 007400 341 GFLIRT--NFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNK----ENS-MLWNTMISALTQHGYDEQAIRLFHDMVRS 413 (605)
Q Consensus 341 ~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~-~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 413 (605)
++.... .+..+..-+..+.+.+.+.+...++..++.++.+. |+. .++.-++......|+.+...++.+-+...
T Consensus 515 ~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvsl 594 (1088)
T KOG4318|consen 515 DEIDTRDESIHLDLPLMTSLQDLLQRLAILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSL 594 (1088)
T ss_pred hhhcccchhhhcccHhHHHHHHHHHHhHHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHh
Confidence 666432 23345555666666666666666666666655421 111 12222223333333333333333222221
Q ss_pred C------------------------------CCCCHHHHHHHH---------------------HHHhccCcHHHHHHHH
Q 007400 414 S------------------------------VKPDKITLAVIL---------------------NACTHSGLVQEGLTYF 442 (605)
Q Consensus 414 ~------------------------------~~p~~~~~~~l~---------------------~~~~~~g~~~~a~~~~ 442 (605)
| .+|.+.....+. ..|.+.|++.+|.++.
T Consensus 595 gl~etgPl~~vhLrkdd~s~a~ea~e~~~qkyk~~P~~~e~lcrlv~ke~td~~qk~mDls~~iq~f~k~g~~~~a~di~ 674 (1088)
T KOG4318|consen 595 GLSETGPLWMVHLRKDDQSAAQEAPEPEEQKYKPYPKDLEGLCRLVYKETTDSPQKTMDLSIPIQKFEKLGSCVDAGDIT 674 (1088)
T ss_pred hhhhcccceEEEeeccchhhhhhcchHHHHHhcCChHHHHHHHHHHHhhccccHHHHHhhcchhHHHHhcccccchhhcc
Confidence 1 122221111111 1244455555554444
Q ss_pred HHch-----------HhhCCCC---------CHHHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-
Q 007400 443 ESMT-----------HDLGIIP---------NQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHG- 501 (605)
Q Consensus 443 ~~~~-----------~~~~~~p---------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g- 501 (605)
+.-- ....+.| +......|+..|.+.|++++|..+|.++++.|+......++..+.+..
T Consensus 675 etpG~r~r~~RDr~~de~e~~~lEll~elt~~lg~~dRLL~sy~~~g~~erA~glwnK~QV~k~~~~l~~LAsIlr~~n~ 754 (1088)
T KOG4318|consen 675 ETPGVRCRNGRDRDTDEGEIVPLELLLELTHELGKNDRLLQSYLEEGRIERASGLWNKDQVSKSPMKLFHLASILRRMNE 754 (1088)
T ss_pred ccCcccccCCCccccccCccccHHHHHHHHhHhHHHHHHHHHHHhhhHHHHHHhHHhhCcCCcchHHHHHHHHHHHhhch
Confidence 3210 0000111 111223477789999999999999999998899988888888877654
Q ss_pred --CHHHHHHHHHHHHhc---CCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCCC
Q 007400 502 --NIDMGRKVVDQLIDQ---NPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQF 552 (605)
Q Consensus 502 --~~~~A~~~~~~~~~~---~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 552 (605)
+..++...-+++.+. .|-+...+...+.+..+......|.+.+....+..+
T Consensus 755 evdvPe~q~e~ekas~~~~~f~ttt~~~~~~a~~a~q~~qkkaAkk~f~r~eeq~~ 810 (1088)
T KOG4318|consen 755 EVDVPEIQAETEKASELRTLFPTTTCYYEGYAFFATQTEQKKAAKKCFERLEEQLT 810 (1088)
T ss_pred hccchhHHHHHHHHHhcccccccchHhhhhhHHHHhhHHHHHHHHHHHHHHHHccC
Confidence 566777777777776 444445555666777777777789999999887744
No 40
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.65 E-value=2.1e-13 Score=124.42 Aligned_cols=449 Identities=10% Similarity=0.060 Sum_probs=267.8
Q ss_pred HHHHHHhcCChhHHHHHhccCCC----CCc-hHHHHHHHHHHccCChHHHHHHHhhcCC--CC------ceeHHHHHHHH
Q 007400 94 LISMYFKCGSDVDARKVFDKIPV----KNL-FSYNNMLSGYANLGMMKHARNLFDNMAE--RD------VVSWNTMIIGY 160 (605)
Q Consensus 94 l~~~~~~~g~~~~a~~~~~~~~~----~~~-~~~~~li~~~~~~~~~~~A~~~~~~~~~--~~------~~~~~~li~~~ 160 (605)
|.+-|.......+|+..++.+.+ |+. ..-..+...+.+.+.+.+|+..++.... |+ ....+.+...+
T Consensus 207 laqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtf 286 (840)
T KOG2003|consen 207 LAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTF 286 (840)
T ss_pred HHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeE
Confidence 33445555666777777776653 221 1111233455666677777777665442 21 12344444456
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHH--------HHHHHHHHh
Q 007400 161 AKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVIS--------SSIVDAYAK 232 (605)
Q Consensus 161 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--------~~l~~~~~~ 232 (605)
.+.|+++.|+..|+...+ ..|+-.+-..++-++...|+.+...+.|..+......+|..-| ..|+.--.+
T Consensus 287 iq~gqy~dainsfdh~m~--~~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~ 364 (840)
T KOG2003|consen 287 IQAGQYDDAINSFDHCME--EAPNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIK 364 (840)
T ss_pred EecccchhhHhhHHHHHH--hCccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHh
Confidence 677777777777777666 3466665555555555667777777777777665433333211 112211111
Q ss_pred cCChHHHHHHHhhcCCCCcchHHHHHHHHHh---cCChHHHHHHHhhCCCC--ChhhHHHHHHHHHhCCChHHHHHHHHH
Q 007400 233 CGELSDARRLFDETDARDVLTWTTMVSGYAK---LGDMESASKLFNEMPEK--NPVSWTTLIAGYTRNGLGQKALELFTR 307 (605)
Q Consensus 233 ~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~---~~~~~~A~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~ 307 (605)
...+....+--+.+.+.-..+-..+|.-... .-..+-+.+.+..-... -...--.-...+.+.|+++.|+++++-
T Consensus 365 nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv 444 (840)
T KOG2003|consen 365 NDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKV 444 (840)
T ss_pred hHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHH
Confidence 1111111100000000000000000000000 00011111111111100 000001123457899999999999998
Q ss_pred HHHCCCCCChHHHHHH--HHHHhcccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCCCCCcc
Q 007400 308 MMILRIRPNQHTFSSC--LCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSM 385 (605)
Q Consensus 308 m~~~g~~p~~~~~~~l--l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 385 (605)
..+..-+.-+..-+.| +..+....++..|.++-...+... ..+......-...-...|++++|.+.|.+.... |..
T Consensus 445 ~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~dka~~~ykeal~n-das 522 (840)
T KOG2003|consen 445 FEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLDKAAEFYKEALNN-DAS 522 (840)
T ss_pred HHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHHHHHHHHHHHHcC-chH
Confidence 8765433333333322 222222347777777777766543 333333333334455679999999999988766 544
Q ss_pred hHHHH---HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHchHhhCCCCC-HHHHHHH
Q 007400 386 LWNTM---ISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPN-QEHHACL 461 (605)
Q Consensus 386 ~~~~l---~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l 461 (605)
+-.+| .-.+...|+.++|++.|-++..- +..+...+..+...|.-..+..+|++++-+.. .+.|+ +.+.+.|
T Consensus 523 c~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~---slip~dp~ilskl 598 (840)
T KOG2003|consen 523 CTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQAN---SLIPNDPAILSKL 598 (840)
T ss_pred HHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhc---ccCCCCHHHHHHH
Confidence 33333 33467789999999999988763 34466788899999999999999999998887 55565 8899999
Q ss_pred HHHHHhcCChHHHHHHHHh-CC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchH
Q 007400 462 IELLAQAGCSDQLMNQLEK-MP-YEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRL 539 (605)
Q Consensus 462 ~~~~~~~g~~~~A~~~~~~-~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 539 (605)
...|-+.|+-..|.+..-. .. ++.+..+..-|+..|....=+++|+.+|+++.-+.|.-......++.++.+.|+|.+
T Consensus 599 ~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqk 678 (840)
T KOG2003|consen 599 ADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQK 678 (840)
T ss_pred HHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHH
Confidence 9999999999999987644 33 445666666677777777778999999999999999555555567888899999999
Q ss_pred HHHHHHHHHhC
Q 007400 540 VEKVRQLINER 550 (605)
Q Consensus 540 a~~~~~~~~~~ 550 (605)
|.++++...+.
T Consensus 679 a~d~yk~~hrk 689 (840)
T KOG2003|consen 679 AFDLYKDIHRK 689 (840)
T ss_pred HHHHHHHHHHh
Confidence 99999988654
No 41
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.65 E-value=4.7e-14 Score=135.40 Aligned_cols=276 Identities=14% Similarity=0.082 Sum_probs=225.9
Q ss_pred CChHHHHHHHhhCCCC---ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCC--CCCChHHHHHHHHHHhcccchHHHHHH
Q 007400 265 GDMESASKLFNEMPEK---NPVSWTTLIAGYTRNGLGQKALELFTRMMILR--IRPNQHTFSSCLCACASIVSLKHGKQV 339 (605)
Q Consensus 265 ~~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g--~~p~~~~~~~ll~~~~~~~~~~~a~~~ 339 (605)
=+..+|...|.++.+. ...+...+..+|...+++++|.++|+.+.+.. ..-+..+|.+.+..+-+ +-+..+
T Consensus 333 y~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls~ 408 (638)
T KOG1126|consen 333 YNCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALSY 408 (638)
T ss_pred HHHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHHH
Confidence 3577888999886542 33456778899999999999999999998742 12255677777766532 223333
Q ss_pred HH-HHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCCC-C-CcchHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC
Q 007400 340 HG-FLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNK-E-NSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVK 416 (605)
Q Consensus 340 ~~-~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 416 (605)
+. .+.+.. +..+.+|.++..+|.-+++.+.|++.|++...- | ...+|+.+..-+....++|.|+..|+..+. +.
T Consensus 409 Laq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~--~~ 485 (638)
T KOG1126|consen 409 LAQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALG--VD 485 (638)
T ss_pred HHHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhc--CC
Confidence 33 333333 778899999999999999999999999976543 2 667888888889999999999999999987 66
Q ss_pred CCH-HHHHHHHHHHhccCcHHHHHHHHHHchHhhCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHH
Q 007400 417 PDK-ITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPN-QEHHACLIELLAQAGCSDQLMNQLEKMP--YEHDSYLWNA 492 (605)
Q Consensus 417 p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~ 492 (605)
|.. ..|..+...|.+.++++.|.-.|+++. .+.|. ......++..+.+.|+.++|+++++++- .+.|+..-..
T Consensus 486 ~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~---~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~ 562 (638)
T KOG1126|consen 486 PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAV---EINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYH 562 (638)
T ss_pred chhhHHHHhhhhheeccchhhHHHHHHHhhh---cCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHH
Confidence 654 488889999999999999999999998 77887 6677888999999999999999999972 3456666667
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 007400 493 LHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINER 550 (605)
Q Consensus 493 l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 550 (605)
.+..+...+++++|+..++++.+..|++...+..++.+|.+.|+.+.|+.-|--+.+.
T Consensus 563 ~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~l 620 (638)
T KOG1126|consen 563 RASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDL 620 (638)
T ss_pred HHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcC
Confidence 7788888999999999999999999999999999999999999999999988877654
No 42
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.65 E-value=2.7e-13 Score=132.89 Aligned_cols=276 Identities=12% Similarity=0.106 Sum_probs=194.2
Q ss_pred cCChHHHHHHHhhCCCC--Chh-hHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChHHHH--HHHHHHhcccchHHHHH
Q 007400 264 LGDMESASKLFNEMPEK--NPV-SWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFS--SCLCACASIVSLKHGKQ 338 (605)
Q Consensus 264 ~~~~~~A~~~~~~~~~~--~~~-~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~--~ll~~~~~~~~~~~a~~ 338 (605)
.|+++.|++.+....+. ++. .|.....+..+.|+++.|...+.++.+. .|+...+. .....+...|+++.|..
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~ 174 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARH 174 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHH
Confidence 46666666666654432 222 2333344457778888888888887763 45543332 33556677788888888
Q ss_pred HHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCCCC--Cc--------chHHHHHHHHHHcCCHHHHHHHHH
Q 007400 339 VHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKE--NS--------MLWNTMISALTQHGYDEQAIRLFH 408 (605)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~--------~~~~~l~~~~~~~g~~~~a~~~~~ 408 (605)
.++.+.+.. +.++.....+...|.+.|++++|.+++..+.... +. .+|..++.......+.+...++++
T Consensus 175 ~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~ 253 (398)
T PRK10747 175 GVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWK 253 (398)
T ss_pred HHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 888887776 5667777788888888888888888887766431 11 123333443444555666677777
Q ss_pred HHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHchHhhCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhCC--CCCC
Q 007400 409 DMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMP--YEHD 486 (605)
Q Consensus 409 ~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~ 486 (605)
.+.+. .+.++.....+..++...|+.++|...+++..+ ..|+.... ++.+....++.+++.+.++++. .+.|
T Consensus 254 ~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~---~~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P~~ 327 (398)
T PRK10747 254 NQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLK---RQYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHGDT 327 (398)
T ss_pred hCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCCHHHH--HHHhhccCCChHHHHHHHHHHHhhCCCC
Confidence 66543 344677888899999999999999999988882 34555332 2223335589999999888762 3456
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 007400 487 SYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINE 549 (605)
Q Consensus 487 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 549 (605)
+..+..++..|...|++++|.+.|+++++..| +...+..++.++.+.|+.++|.+++++-..
T Consensus 328 ~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P-~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 328 PLLWSTLGQLLMKHGEWQEASLAFRAALKQRP-DAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 77788899999999999999999999999999 567788999999999999999999987654
No 43
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.64 E-value=1.9e-12 Score=118.80 Aligned_cols=328 Identities=14% Similarity=0.081 Sum_probs=251.6
Q ss_pred CCCCChhHHHHHHHHHHhcCChHHHHHHHhhcCCCCcchHHHHHHHHHhcCChHHHHHHHhhCCCCChhh-HHHHHHHHH
Q 007400 215 GFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVS-WTTLIAGYT 293 (605)
Q Consensus 215 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~l~~~~~ 293 (605)
+...|...+-.....+.+.|..+.|+..|......-+..|.+.+....-.-+.+.+..+...+...+... ---+..++.
T Consensus 159 ~~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~~l~~~l~~~~h~M~~~F~~~a~~ 238 (559)
T KOG1155|consen 159 GGEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILSILVVGLPSDMHWMKKFFLKKAYQ 238 (559)
T ss_pred cccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHHHHHhcCcccchHHHHHHHHHHHH
Confidence 3445666666666677888999999999999888777778777766655556665555554444332221 122345666
Q ss_pred hCCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhcccchHHHHHHHHHHHHcCCC--CChhHHHHHHHHHHhcCChH-H
Q 007400 294 RNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFR--SNTIVMSSLIDMYSKCGCLN-D 370 (605)
Q Consensus 294 ~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~-~ 370 (605)
...+.+++++-.......|++.+...-+....+.....++++|+.+|+++.+...- .|..+|..++-.--...++. -
T Consensus 239 el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~L 318 (559)
T KOG1155|consen 239 ELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYL 318 (559)
T ss_pred HHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHH
Confidence 66788999998888888887777666666666777889999999999999987421 24566665543322222221 2
Q ss_pred HHHHHHhcCCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHchHhh
Q 007400 371 GRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDK-ITLAVILNACTHSGLVQEGLTYFESMTHDL 449 (605)
Q Consensus 371 A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 449 (605)
|..+++- .+--+.|..++..-|...++.++|...|++.++ +.|.. ..|+.+..-|....+...|...++++.
T Consensus 319 A~~v~~i--dKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALk--LNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAv--- 391 (559)
T KOG1155|consen 319 AQNVSNI--DKYRPETCCIIANYYSLRSEHEKAVMYFKRALK--LNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAV--- 391 (559)
T ss_pred HHHHHHh--ccCCccceeeehhHHHHHHhHHHHHHHHHHHHh--cCcchhHHHHHhhHHHHHhcccHHHHHHHHHHH---
Confidence 3333322 222455677788889999999999999999999 56754 588888899999999999999999998
Q ss_pred CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHH
Q 007400 450 GIIP-NQEHHACLIELLAQAGCSDQLMNQLEKMP--YEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGL 526 (605)
Q Consensus 450 ~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 526 (605)
.+.| |-..|..|+++|.-.+...=|+-.|++.. .+.|...|.+|+.+|.+.++.++|++.|++++...-.+..++..
T Consensus 392 di~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~ 471 (559)
T KOG1155|consen 392 DINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVR 471 (559)
T ss_pred hcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHH
Confidence 5566 47799999999999999999999999873 45689999999999999999999999999999997668899999
Q ss_pred HHHHHHhcCCchHHHHHHHHHHh
Q 007400 527 LSSIYSALGKGRLVEKVRQLINE 549 (605)
Q Consensus 527 l~~~~~~~g~~~~a~~~~~~~~~ 549 (605)
|+++|.+.++.++|...+++..+
T Consensus 472 LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 472 LAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHH
Confidence 99999999999999999988765
No 44
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.60 E-value=9.2e-11 Score=104.17 Aligned_cols=480 Identities=13% Similarity=0.075 Sum_probs=286.8
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHH-HHhhhcCChhHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcC
Q 007400 24 FLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFIL-QQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCG 102 (605)
Q Consensus 24 ~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 102 (605)
+-.++.+.++..|+.+++--...+- -........+ .++.+.|++++|...|..+.... .+|.. ..--+...+.-.|
T Consensus 29 Ledfls~rDytGAislLefk~~~~~-EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~e-l~vnLAcc~FyLg 105 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDR-EEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAE-LGVNLACCKFYLG 105 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccch-hhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcc-cchhHHHHHHHHH
Confidence 4467788999999999987764442 2223455555 45568999999999999888744 33444 5555666667789
Q ss_pred ChhHHHHHhccCCCCCchHHHHHHHHHHccCChHHHHHHHhhcCCCCceeHHHHHHHHHhcCChHHHHHHHHHHHhCCCC
Q 007400 103 SDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSIS 182 (605)
Q Consensus 103 ~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~ 182 (605)
.+.+|..+-....+ ++..-..+...--+.++-++-..+-+.+... ...--+|.......-.+.+|+++|+.....+
T Consensus 106 ~Y~eA~~~~~ka~k-~pL~~RLlfhlahklndEk~~~~fh~~LqD~-~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn-- 181 (557)
T KOG3785|consen 106 QYIEAKSIAEKAPK-TPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-LEDQLSLASVHYMRMHYQEAIDVYKRVLQDN-- 181 (557)
T ss_pred HHHHHHHHHhhCCC-ChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-HHHHHhHHHHHHHHHHHHHHHHHHHHHHhcC--
Confidence 99999998877764 2333344455555666666555554444332 2233345555555668899999999998744
Q ss_pred CChhhHHHHHHH-HhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhcCCCCcchHHHHHHHH
Q 007400 183 CNEFSFAGILTI-CVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGY 261 (605)
Q Consensus 183 p~~~~~~~ll~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~ 261 (605)
|+....|..+.. |.+..-++-+.++++..++.- +.+....|.......+.=+-..|..-.+++...-... -..+.-+
T Consensus 182 ~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~-pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~-~~f~~~l 259 (557)
T KOG3785|consen 182 PEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQF-PDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQE-YPFIEYL 259 (557)
T ss_pred hhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhC-CCcHHHHHHHHHHHhhhhccchhHHHHHHHHhccccc-chhHHHH
Confidence 566666665554 467788888888888877753 2233444444433333222122222222222110000 1112222
Q ss_pred Hhc-----CChHHHHHHHhhCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhcccchHHH
Q 007400 262 AKL-----GDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHG 336 (605)
Q Consensus 262 ~~~-----~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a 336 (605)
++. .+-+.|++++-.+...=+.+--.|+--|.++++..+|..+.+++.- ..|-......+.. ..
T Consensus 260 ~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~P--ttP~EyilKgvv~--aa------- 328 (557)
T KOG3785|consen 260 CRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDP--TTPYEYILKGVVF--AA------- 328 (557)
T ss_pred HHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCC--CChHHHHHHHHHH--HH-------
Confidence 222 3345566666555443334444555566777777777766655431 1222111111111 11
Q ss_pred HHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCCC----CCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 007400 337 KQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNK----ENSMLWNTMISALTQHGYDEQAIRLFHDMVR 412 (605)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 412 (605)
+..-........-|.+.|+-.... .++..-.++...+.-..++++++-.+.....
T Consensus 329 ---------------------lGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~s 387 (557)
T KOG3785|consen 329 ---------------------LGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIES 387 (557)
T ss_pred ---------------------hhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111111112233444444433322 1333455666666667778888888877766
Q ss_pred CCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHchHhhCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHH-
Q 007400 413 SSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWN- 491 (605)
Q Consensus 413 ~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~- 491 (605)
- +..|...-..+..+.+..|++.+|.++|-++. ...++-+..-...|.++|.++|+++-|++++-++..+.+..+..
T Consensus 388 Y-F~NdD~Fn~N~AQAk~atgny~eaEelf~~is-~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t~~e~fsLLq 465 (557)
T KOG3785|consen 388 Y-FTNDDDFNLNLAQAKLATGNYVEAEELFIRIS-GPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKTNTPSERFSLLQ 465 (557)
T ss_pred H-hcCcchhhhHHHHHHHHhcChHHHHHHHhhhc-ChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhcCCchhHHHHHH
Confidence 4 33344444557788999999999999998887 22333333344677889999999999999999887444555444
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCCCcCCC
Q 007400 492 ALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQ 556 (605)
Q Consensus 492 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 556 (605)
.++..|.+.+++--|-+.|+.+-.++| +++-|. |+......+|..+......+.|
T Consensus 466 lIAn~CYk~~eFyyaaKAFd~lE~lDP-~pEnWe---------GKRGACaG~f~~l~~~~~~~~p 520 (557)
T KOG3785|consen 466 LIANDCYKANEFYYAAKAFDELEILDP-TPENWE---------GKRGACAGLFRQLANHKTDPIP 520 (557)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHccCC-CccccC---------CccchHHHHHHHHHcCCCCCCc
Confidence 456789999999999999998888888 666554 5555556667766554444444
No 45
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.59 E-value=3.3e-13 Score=129.69 Aligned_cols=247 Identities=12% Similarity=0.118 Sum_probs=198.0
Q ss_pred CChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhcccchHHHHHHHHHHHHcCC--CCChhHHHHHHHHHHhcCChH-HHH
Q 007400 296 GLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNF--RSNTIVMSSLIDMYSKCGCLN-DGR 372 (605)
Q Consensus 296 g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~-~A~ 372 (605)
-+..+|+..|...... +.-+......+..+|...+++++|+++|+.+.+... -.+..+|.+.+-.+-+.=.+. -|.
T Consensus 333 y~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq 411 (638)
T KOG1126|consen 333 YNCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQ 411 (638)
T ss_pred HHHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHH
Confidence 4678999999995443 444456667788999999999999999999987531 234566666554332211111 122
Q ss_pred HHHHhcCCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHchHhhCC
Q 007400 373 QVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKP-DKITLAVILNACTHSGLVQEGLTYFESMTHDLGI 451 (605)
Q Consensus 373 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 451 (605)
.+.+.. +..+.+|.++..+|.-+++.+.|++.|++.++ +.| ...+|+.+..=+.....+|.|...|+.+. ++
T Consensus 412 ~Li~~~--~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQ--ldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al---~~ 484 (638)
T KOG1126|consen 412 DLIDTD--PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQ--LDPRFAYAYTLLGHESIATEEFDKAMKSFRKAL---GV 484 (638)
T ss_pred HHHhhC--CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhc--cCCccchhhhhcCChhhhhHHHHhHHHHHHhhh---cC
Confidence 222222 22578999999999999999999999999999 778 46799999888999999999999999988 67
Q ss_pred CCC-HHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHH
Q 007400 452 IPN-QEHHACLIELLAQAGCSDQLMNQLEKM-PYEH-DSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLS 528 (605)
Q Consensus 452 ~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 528 (605)
.|. -..|..|+-.|.++++++.|+-.|+++ ...| +....-.++..+-+.|+.++|+.++++++.++|.|+-.-+..+
T Consensus 485 ~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~ 564 (638)
T KOG1126|consen 485 DPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRA 564 (638)
T ss_pred CchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHH
Confidence 776 457788888999999999999999997 3445 5566667888899999999999999999999999999999999
Q ss_pred HHHHhcCCchHHHHHHHHHHhC
Q 007400 529 SIYSALGKGRLVEKVRQLINER 550 (605)
Q Consensus 529 ~~~~~~g~~~~a~~~~~~~~~~ 550 (605)
.++...+++++|...++++++.
T Consensus 565 ~il~~~~~~~eal~~LEeLk~~ 586 (638)
T KOG1126|consen 565 SILFSLGRYVEALQELEELKEL 586 (638)
T ss_pred HHHHhhcchHHHHHHHHHHHHh
Confidence 9999999999999999999873
No 46
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.59 E-value=5.2e-10 Score=107.22 Aligned_cols=385 Identities=16% Similarity=0.191 Sum_probs=241.1
Q ss_pred eeHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccC----------------------ChHHHHHHH
Q 007400 151 VSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLE----------------------ELKLTRQVH 208 (605)
Q Consensus 151 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~----------------------~~~~a~~~~ 208 (605)
..|.+|..-|.+.|.+++|.++|++..+.- .+..-|..+.++|+... +++-....|
T Consensus 249 ~Lw~SLAdYYIr~g~~ekarDvyeeai~~v--~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~ 326 (835)
T KOG2047|consen 249 FLWCSLADYYIRSGLFEKARDVYEEAIQTV--MTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARF 326 (835)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHhh--eehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHH
Confidence 368888889999999999999998877632 34444444444443211 111222223
Q ss_pred HHHHHhC-----------CCCChhHHHHHHHHHHhcCChHHHHHHHhhcCCC-C--------cchHHHHHHHHHhcCChH
Q 007400 209 GQVLVTG-----------FLSNVVISSSIVDAYAKCGELSDARRLFDETDAR-D--------VLTWTTMVSGYAKLGDME 268 (605)
Q Consensus 209 ~~~~~~~-----------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~--------~~~~~~li~~~~~~~~~~ 268 (605)
+.+.... -+.++..|..-+.. ..|+..+-...|.+.... | ...|..+...|-..|+++
T Consensus 327 e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l--~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~ 404 (835)
T KOG2047|consen 327 ESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKL--YEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLD 404 (835)
T ss_pred HHHHhccchHHHHHHHhcCCccHHHHHhhhhh--hcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHH
Confidence 3332221 11233333333332 245566666666555432 1 245888888999999999
Q ss_pred HHHHHHhhCCCCC-------hhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC-----------------ChHHHHHHH
Q 007400 269 SASKLFNEMPEKN-------PVSWTTLIAGYTRNGLGQKALELFTRMMILRIRP-----------------NQHTFSSCL 324 (605)
Q Consensus 269 ~A~~~~~~~~~~~-------~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p-----------------~~~~~~~ll 324 (605)
.|..+|++..+-+ ..+|..-...-.++.+++.|+++.+......-.| +...|...+
T Consensus 405 ~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~ 484 (835)
T KOG2047|consen 405 DARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYA 484 (835)
T ss_pred HHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHH
Confidence 9999999987632 2356666666677889999999888876421111 112344444
Q ss_pred HHHhcccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcC---CCCCc-chHHHHHHHHHH---c
Q 007400 325 CACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTD---NKENS-MLWNTMISALTQ---H 397 (605)
Q Consensus 325 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~-~~~~~l~~~~~~---~ 397 (605)
...-..|-++....+++.+++..+ .++.+.....-.+-...-++++.++|++-. +.|++ ..|+..+.-+.+ .
T Consensus 485 DleEs~gtfestk~vYdriidLri-aTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg 563 (835)
T KOG2047|consen 485 DLEESLGTFESTKAVYDRIIDLRI-ATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGG 563 (835)
T ss_pred HHHHHhccHHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcC
Confidence 555567888899999999998764 334443444445566677899999999644 33554 367776655544 3
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHH--HHHHHHHHhccCcHHHHHHHHHHchHhhCCCCC--HHHHHHHHHHHHhcCChHH
Q 007400 398 GYDEQAIRLFHDMVRSSVKPDKIT--LAVILNACTHSGLVQEGLTYFESMTHDLGIIPN--QEHHACLIELLAQAGCSDQ 473 (605)
Q Consensus 398 g~~~~a~~~~~~m~~~~~~p~~~~--~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~ 473 (605)
...+.|..+|++.++ |++|...- |......-.+-|-...|+.+++++. . ++++. ...|+.++.-....=-+..
T Consensus 564 ~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat-~-~v~~a~~l~myni~I~kaae~yGv~~ 640 (835)
T KOG2047|consen 564 TKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERAT-S-AVKEAQRLDMYNIYIKKAAEIYGVPR 640 (835)
T ss_pred CCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH-h-cCCHHHHHHHHHHHHHHHHHHhCCcc
Confidence 468999999999999 67776542 2222222335688889999999986 3 55554 4567766654443333444
Q ss_pred HHHHHHhC-CCCCCHHHHH---HHHHHHHhcCCHHHHHHHHHHHHhc-CCC-CCchHHHHHHHHHhcCCchHHHHH
Q 007400 474 LMNQLEKM-PYEHDSYLWN---ALHGVCRIHGNIDMGRKVVDQLIDQ-NPQ-SSATHGLLSSIYSALGKGRLVEKV 543 (605)
Q Consensus 474 A~~~~~~~-~~~~~~~~~~---~l~~~~~~~g~~~~A~~~~~~~~~~-~p~-~~~~~~~l~~~~~~~g~~~~a~~~ 543 (605)
...+|+++ ..=|+..+-. ..+..-.+.|..++|+.+|...-+. +|. +...|...-..-.+.|+-+-..+.
T Consensus 641 TR~iYekaIe~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~dPr~~~~fW~twk~FEvrHGnedT~keM 716 (835)
T KOG2047|consen 641 TREIYEKAIESLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICDPRVTTEFWDTWKEFEVRHGNEDTYKEM 716 (835)
T ss_pred cHHHHHHHHHhCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHHHHHHHHHHhcCCHHHHHHH
Confidence 45555553 1124443333 3445567889999999999999887 554 456777888888888985544443
No 47
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.58 E-value=3e-11 Score=111.13 Aligned_cols=194 Identities=13% Similarity=0.086 Sum_probs=92.8
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhcccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHH
Q 007400 284 SWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYS 363 (605)
Q Consensus 284 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 363 (605)
|...+.+-|.-.++.++|...|++.++.+ +-....++.+.+-|....+...|.+.++.+++.+ |.|-..|-.|.++|.
T Consensus 332 TCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~-p~DyRAWYGLGQaYe 409 (559)
T KOG1155|consen 332 TCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDIN-PRDYRAWYGLGQAYE 409 (559)
T ss_pred ceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcC-chhHHHHhhhhHHHH
Confidence 33444444444455555555555554432 1222334444444455555555555555555444 444445555555555
Q ss_pred hcCChHHHHHHHHhcC--CCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHH
Q 007400 364 KCGCLNDGRQVFDLTD--NKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTY 441 (605)
Q Consensus 364 ~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~ 441 (605)
-.+...-|+-.|++.. .+.|...|.+|..+|.+.++.++|++.|.+....| ..+...+..|...+.+.++.++|...
T Consensus 410 im~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dte~~~l~~LakLye~l~d~~eAa~~ 488 (559)
T KOG1155|consen 410 IMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DTEGSALVRLAKLYEELKDLNEAAQY 488 (559)
T ss_pred HhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHHHHhHHHHHHH
Confidence 5555555555555432 12245555555555555555555555555555543 22344555555555555555555555
Q ss_pred HHHchHhh---C-CCCC-HHHHHHHHHHHHhcCChHHHHHHHHh
Q 007400 442 FESMTHDL---G-IIPN-QEHHACLIELLAQAGCSDQLMNQLEK 480 (605)
Q Consensus 442 ~~~~~~~~---~-~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~ 480 (605)
|++..... | +.|. .....-|...+.+.+++++|......
T Consensus 489 yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~ 532 (559)
T KOG1155|consen 489 YEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATL 532 (559)
T ss_pred HHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHH
Confidence 55444211 1 2221 22222344445555555555554433
No 48
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.57 E-value=4.3e-12 Score=125.18 Aligned_cols=278 Identities=10% Similarity=0.053 Sum_probs=151.3
Q ss_pred cCChHHHHHHHhhCCC--CC-hhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChH--HHHHHHHHHhcccchHHHHH
Q 007400 264 LGDMESASKLFNEMPE--KN-PVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQH--TFSSCLCACASIVSLKHGKQ 338 (605)
Q Consensus 264 ~~~~~~A~~~~~~~~~--~~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~--~~~~ll~~~~~~~~~~~a~~ 338 (605)
.|+++.|.+.+.+..+ |+ ...+-....+..+.|+++.|.+++.+..+. .|+.. ........+...|+++.|..
T Consensus 97 ~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~--~p~~~l~~~~~~a~l~l~~~~~~~Al~ 174 (409)
T TIGR00540 97 EGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAEL--AGNDNILVEIARTRILLAQNELHAARH 174 (409)
T ss_pred CCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCcCchHHHHHHHHHHHHCCCHHHHHH
Confidence 3444444444444332 11 122233344555556666666666665442 23322 22223445555666666666
Q ss_pred HHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCCC--CCcchHHH----HHHHHHHcCCHHHHHHHHHHHHH
Q 007400 339 VHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNK--ENSMLWNT----MISALTQHGYDEQAIRLFHDMVR 412 (605)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~----l~~~~~~~g~~~~a~~~~~~m~~ 412 (605)
.++.+.+.. |.++.+...+...+...|++++|.+.++.+.+. .+...+.. ........+..+++.+.+..+.+
T Consensus 175 ~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~ 253 (409)
T TIGR00540 175 GVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWK 253 (409)
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 666666554 444455556666666666666666666554432 12221210 11111222222223334444443
Q ss_pred CCC---CCCHHHHHHHHHHHhccCcHHHHHHHHHHchHhhCCCCCHHHH-HHHHHH--HHhcCChHHHHHHHHhCC--CC
Q 007400 413 SSV---KPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHH-ACLIEL--LAQAGCSDQLMNQLEKMP--YE 484 (605)
Q Consensus 413 ~~~---~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~-~~l~~~--~~~~g~~~~A~~~~~~~~--~~ 484 (605)
... +.+...+..++..+...|+.++|...+++..+ ..|+.... ..++.. ....++.+.+.+.+++.. .+
T Consensus 254 ~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~---~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p 330 (409)
T TIGR00540 254 NQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLK---KLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVD 330 (409)
T ss_pred HCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHh---hCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCC
Confidence 211 12556667777777777777777777777762 23332210 001222 223456677777776642 23
Q ss_pred CCH--HHHHHHHHHHHhcCCHHHHHHHHH--HHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHH
Q 007400 485 HDS--YLWNALHGVCRIHGNIDMGRKVVD--QLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLIN 548 (605)
Q Consensus 485 ~~~--~~~~~l~~~~~~~g~~~~A~~~~~--~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 548 (605)
.|+ ....+++..|.+.|++++|.+.|+ .+++..| ++..+..++.++.+.|+.++|.++|++..
T Consensus 331 ~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p-~~~~~~~La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 331 DKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQL-DANDLAMAADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred CChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 344 566788888888888888888888 5666778 45556788888888888888888888753
No 49
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.57 E-value=5.7e-12 Score=123.56 Aligned_cols=218 Identities=11% Similarity=0.059 Sum_probs=137.8
Q ss_pred cCChHHHHHHHhhCCC---CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhcccchHHHHHHH
Q 007400 264 LGDMESASKLFNEMPE---KNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVH 340 (605)
Q Consensus 264 ~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 340 (605)
.|++++|...++++.+ .++..+..+...|.+.|++++|.+++..+.+.+..++. ....+-
T Consensus 166 ~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~-~~~~l~---------------- 228 (398)
T PRK10747 166 RNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEE-HRAMLE---------------- 228 (398)
T ss_pred CCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHH-HHHHHH----------------
Confidence 3333344344444433 25566677777788888888888888888776543221 111000
Q ss_pred HHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCC--CCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 007400 341 GFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDN--KENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPD 418 (605)
Q Consensus 341 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~ 418 (605)
...|..++.......+.+...++++.++. +.++.....+...+...|+.++|.+++++..+. .|+
T Consensus 229 -----------~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~ 295 (398)
T PRK10747 229 -----------QQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYD 295 (398)
T ss_pred -----------HHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCC
Confidence 00111122222222344555555555542 236667777788888888888888888888773 445
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHchHhhCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHHHHHHHHH
Q 007400 419 KITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPN-QEHHACLIELLAQAGCSDQLMNQLEKM-PYEHDSYLWNALHGV 496 (605)
Q Consensus 419 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~l~~~ 496 (605)
.... ++.+....++.+++....+...+. .|+ +..+..+.+.+.+.|++++|.+.|++. ...|+...+..+..+
T Consensus 296 ~~l~--~l~~~l~~~~~~~al~~~e~~lk~---~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~ 370 (398)
T PRK10747 296 ERLV--LLIPRLKTNNPEQLEKVLRQQIKQ---HGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADA 370 (398)
T ss_pred HHHH--HHHhhccCCChHHHHHHHHHHHhh---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 5322 223334557888888888887732 344 566778888888888888888888876 456888887788888
Q ss_pred HHhcCCHHHHHHHHHHHHhc
Q 007400 497 CRIHGNIDMGRKVVDQLIDQ 516 (605)
Q Consensus 497 ~~~~g~~~~A~~~~~~~~~~ 516 (605)
+.+.|+.++|..+|++.+.+
T Consensus 371 ~~~~g~~~~A~~~~~~~l~~ 390 (398)
T PRK10747 371 LDRLHKPEEAAAMRRDGLML 390 (398)
T ss_pred HHHcCCHHHHHHHHHHHHhh
Confidence 88888888888888888775
No 50
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.56 E-value=1.6e-10 Score=109.27 Aligned_cols=280 Identities=11% Similarity=0.064 Sum_probs=218.5
Q ss_pred CcchHHHHHHHHHhcCChHHHHHHHhhCCCCC---hhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChHHHHHHHHH
Q 007400 250 DVLTWTTMVSGYAKLGDMESASKLFNEMPEKN---PVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCA 326 (605)
Q Consensus 250 ~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 326 (605)
++........-+...+++.+..++++.+.+.+ ...+..-|..+...|+..+-..+=.++.+. .+-...+|-.+..-
T Consensus 243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~Y 321 (611)
T KOG1173|consen 243 NLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGCY 321 (611)
T ss_pred cHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHHH
Confidence 45555556666777788888888888887643 445566677888889988888888888875 35567788888888
Q ss_pred HhcccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCCC--CCcchHHHHHHHHHHcCCHHHHH
Q 007400 327 CASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNK--ENSMLWNTMISALTQHGYDEQAI 404 (605)
Q Consensus 327 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~ 404 (605)
|...|+..+|++.|.+....+ +.-...|-.+.+.|.-.|..+.|+..|.....- .....+--+.--|.+.++.+.|.
T Consensus 322 Yl~i~k~seARry~SKat~lD-~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe 400 (611)
T KOG1173|consen 322 YLMIGKYSEARRYFSKATTLD-PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAE 400 (611)
T ss_pred HHHhcCcHHHHHHHHHHhhcC-ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHH
Confidence 889999999999999988765 444567888999999999999999988754321 12222333444578899999999
Q ss_pred HHHHHHHHCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHchHhh-CC---CC-CHHHHHHHHHHHHhcCChHHHHHHH
Q 007400 405 RLFHDMVRSSVKP-DKITLAVILNACTHSGLVQEGLTYFESMTHDL-GI---IP-NQEHHACLIELLAQAGCSDQLMNQL 478 (605)
Q Consensus 405 ~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~---~p-~~~~~~~l~~~~~~~g~~~~A~~~~ 478 (605)
+.|.+... +.| |+..++-+.-.....+.+.+|..+|+...... .+ .+ -..+++.|+.+|.+.+++++|+..+
T Consensus 401 ~Ff~~A~a--i~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~ 478 (611)
T KOG1173|consen 401 KFFKQALA--IAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYY 478 (611)
T ss_pred HHHHHHHh--cCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHH
Confidence 99999888 667 56688888777778899999999999876211 11 11 3457899999999999999999999
Q ss_pred HhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHh
Q 007400 479 EKM--PYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSA 533 (605)
Q Consensus 479 ~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 533 (605)
++. ..+.+..++.+++-.|...|+++.|.+.|.+++-+.|++..+-..|..+...
T Consensus 479 q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~aie~ 535 (611)
T KOG1173|consen 479 QKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAIED 535 (611)
T ss_pred HHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHHHh
Confidence 986 2467889999999999999999999999999999999887766666655543
No 51
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.56 E-value=1.7e-11 Score=120.90 Aligned_cols=253 Identities=9% Similarity=-0.018 Sum_probs=161.1
Q ss_pred HHhcCChHHHHHHHhhCCC--CCh--hhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhcccchHHH
Q 007400 261 YAKLGDMESASKLFNEMPE--KNP--VSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHG 336 (605)
Q Consensus 261 ~~~~~~~~~A~~~~~~~~~--~~~--~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a 336 (605)
+...|+.+.|.+.+.+..+ |+. .........+...|+++.|...++.+.+.. +-+...+..+...+...|+++.|
T Consensus 128 a~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a 206 (409)
T TIGR00540 128 AQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQAL 206 (409)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHH
Confidence 3344444444455544322 221 222334556666677777777777766653 33444566666666777777777
Q ss_pred HHHHHHHHHcCCCCChhHHHHHHHHH---H----hcCChHHHHHHHHhcCCC--CCcchHHHHHHHHHHcCCHHHHHHHH
Q 007400 337 KQVHGFLIRTNFRSNTIVMSSLIDMY---S----KCGCLNDGRQVFDLTDNK--ENSMLWNTMISALTQHGYDEQAIRLF 407 (605)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~l~~~~---~----~~g~~~~A~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~ 407 (605)
.+.+..+.+.+..+.......-..++ . .....+...+.++..+.. .++..+..++..+...|+.++|.+++
T Consensus 207 ~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l 286 (409)
T TIGR00540 207 DDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEII 286 (409)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHH
Confidence 77777777665332222111111111 1 122233444445554421 37778888889999999999999999
Q ss_pred HHHHHCCCCCCHHH---HHHHHHHHhccCcHHHHHHHHHHchHhhCCCCCHHHHHHHHHHHHhcCChHHHHHHHHh--C-
Q 007400 408 HDMVRSSVKPDKIT---LAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEK--M- 481 (605)
Q Consensus 408 ~~m~~~~~~p~~~~---~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~--~- 481 (605)
++..+. .||... ...........++.+.+...++...+...-.|+.....++.+.+.+.|++++|.+.|++ .
T Consensus 287 ~~~l~~--~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~ 364 (409)
T TIGR00540 287 FDGLKK--LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAAC 364 (409)
T ss_pred HHHHhh--CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHh
Confidence 999984 455442 12222223445788888888888874322223226677899999999999999999994 3
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 007400 482 PYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQ 516 (605)
Q Consensus 482 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 516 (605)
...|+...+..++..+.+.|+.++|.++|++.+..
T Consensus 365 ~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~~ 399 (409)
T TIGR00540 365 KEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLGL 399 (409)
T ss_pred hcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 45789888889999999999999999999998765
No 52
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.55 E-value=8.1e-11 Score=109.06 Aligned_cols=387 Identities=12% Similarity=0.020 Sum_probs=253.0
Q ss_pred HHHHHHHHHccCChHHHHHHHhhcCC--CC-ceeHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChh-hHHHHHHHHhc
Q 007400 122 YNNMLSGYANLGMMKHARNLFDNMAE--RD-VVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEF-SFAGILTICVK 197 (605)
Q Consensus 122 ~~~li~~~~~~~~~~~A~~~~~~~~~--~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-~~~~ll~~~~~ 197 (605)
+-...+-|.+.|.+++|+..+..... || +..|.....+|...|+|+++.+--.+..+ +.|+.. .+..-.+++-.
T Consensus 118 lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALE--l~P~Y~KAl~RRA~A~E~ 195 (606)
T KOG0547|consen 118 LKTKGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALE--LNPDYVKALLRRASAHEQ 195 (606)
T ss_pred HHhhhhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhh--cCcHHHHHHHHHHHHHHh
Confidence 44556678888999999999998764 77 77888888899999999999888877776 445433 33444445566
Q ss_pred cCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhcCCC---Ccc----------------------
Q 007400 198 LEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDAR---DVL---------------------- 252 (605)
Q Consensus 198 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~---------------------- 252 (605)
.|++++|..=..-..-.+---+..+--.+=+.+-+.| ...+.+-+.+-..+ ...
T Consensus 196 lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a-~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~ 274 (606)
T KOG0547|consen 196 LGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQA-MKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSD 274 (606)
T ss_pred hccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHH-HHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCc
Confidence 6777666532222111111111111110111111111 11122222211111 000
Q ss_pred -hHHHHHHHH----Hh-cCChHHHHHHHhhCC-------CCC---------hhhHHHHHHHHHhCCChHHHHHHHHHHHH
Q 007400 253 -TWTTMVSGY----AK-LGDMESASKLFNEMP-------EKN---------PVSWTTLIAGYTRNGLGQKALELFTRMMI 310 (605)
Q Consensus 253 -~~~~li~~~----~~-~~~~~~A~~~~~~~~-------~~~---------~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 310 (605)
....+..++ .. ...+..|...+.+-. ..+ ..+.......+.-.|+...|..-|+..+.
T Consensus 275 ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~ 354 (606)
T KOG0547|consen 275 KSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIK 354 (606)
T ss_pred cchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHh
Confidence 111111111 10 112333333333221 111 22233333345567899999999999998
Q ss_pred CCCCCChHHHHHHHHHHhcccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCCC--CCcchHH
Q 007400 311 LRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNK--ENSMLWN 388 (605)
Q Consensus 311 ~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~ 388 (605)
....++. .|-.+...|....+.++....|..+.+.+ +.++.+|..-..++.-.+++++|..-|++...- .+...|-
T Consensus 355 l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~i 432 (606)
T KOG0547|consen 355 LDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYI 432 (606)
T ss_pred cCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHH
Confidence 6533333 27777888999999999999999999987 778888888899999999999999999976642 2566777
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHchHhhCCCCC---------HHHHH
Q 007400 389 TMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPN---------QEHHA 459 (605)
Q Consensus 389 ~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~---------~~~~~ 459 (605)
.+..+..+.+++++++..|++..+. ++--+..|+.....+...++++.|.+.|+..+ .+.|+ +.+..
T Consensus 433 Ql~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai---~LE~~~~~~~v~~~plV~K 508 (606)
T KOG0547|consen 433 QLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAI---ELEPREHLIIVNAAPLVHK 508 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHH---hhccccccccccchhhhhh
Confidence 7777778899999999999999985 33345699999999999999999999999988 34443 22222
Q ss_pred HHHHHHHhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 007400 460 CLIELLAQAGCSDQLMNQLEKMP-YEH-DSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNP 518 (605)
Q Consensus 460 ~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 518 (605)
.++. +.-.+++..|.+++.+.. ..| ....+..++..-.++|+.++|+++|++...+..
T Consensus 509 a~l~-~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~lAr 568 (606)
T KOG0547|consen 509 ALLV-LQWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQLAR 568 (606)
T ss_pred hHhh-hchhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 3332 223489999999999873 333 355788899999999999999999999988744
No 53
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.51 E-value=1.3e-13 Score=129.12 Aligned_cols=217 Identities=17% Similarity=0.191 Sum_probs=89.7
Q ss_pred HHHHHHhcCChHHHHHHHhhcCCC---CcchHHHHHHHHHhcCChHHHHHHHhhCCC--CChhhHHHHHHHHHhCCChHH
Q 007400 226 IVDAYAKCGELSDARRLFDETDAR---DVLTWTTMVSGYAKLGDMESASKLFNEMPE--KNPVSWTTLIAGYTRNGLGQK 300 (605)
Q Consensus 226 l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~ 300 (605)
+.......++.+.|.+.++++... ++..+..++.. ...+++++|.+++...-+ +++..+..++..+.+.+++++
T Consensus 50 ~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ 128 (280)
T PF13429_consen 50 LADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQDGDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDE 128 (280)
T ss_dssp ---------------------------------------------------------------------H-HHHTT-HHH
T ss_pred cccccccccccccccccccccccccccccccccccccc-cccccccccccccccccccccccchhhHHHHHHHHHhHHHH
Confidence 333334444444444444444332 12223333333 344444444455444322 345556666677777777777
Q ss_pred HHHHHHHHHHCC-CCCChHHHHHHHHHHhcccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcC
Q 007400 301 ALELFTRMMILR-IRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTD 379 (605)
Q Consensus 301 a~~~~~~m~~~g-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 379 (605)
+..+++.+.... .+.+...|..+...+.+.|+.++|...++++++.. |.+..+...++..+...|+.+++.+++....
T Consensus 129 ~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~ 207 (280)
T PF13429_consen 129 AEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLL 207 (280)
T ss_dssp HHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHH
Confidence 777777766432 23455566666677777777777777777777765 4456667777777777777777666665443
Q ss_pred C--CCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHch
Q 007400 380 N--KENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKP-DKITLAVILNACTHSGLVQEGLTYFESMT 446 (605)
Q Consensus 380 ~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 446 (605)
. +.|+..|..+..++...|+.++|+.+|++..+. .| |+.....+..++...|+.++|..+.+++.
T Consensus 208 ~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~--~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 208 KAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKL--NPDDPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp HH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHH--STT-HHHHHHHHHHHT----------------
T ss_pred HHCcCHHHHHHHHHHHhccccccccccccccccccc--cccccccccccccccccccccccccccccccc
Confidence 2 235566777777888888888888888887773 34 56677777788888888888887777664
No 54
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.51 E-value=4.3e-11 Score=108.46 Aligned_cols=277 Identities=13% Similarity=0.120 Sum_probs=168.7
Q ss_pred CChHHHHHHHhhCCCC---ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhcccchHHHHHHHH
Q 007400 265 GDMESASKLFNEMPEK---NPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHG 341 (605)
Q Consensus 265 ~~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 341 (605)
|++.+|++...+-.+. ....|..-+.+.-+.|+.+.+-.++.+..+.--.++...+.+........|+++.|..-+.
T Consensus 98 G~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v~ 177 (400)
T COG3071 98 GDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENVD 177 (400)
T ss_pred CcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHHH
Confidence 4444444444443221 2223333344445555555555555555543223333344444445555555555555555
Q ss_pred HHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCCCC----------CcchHHHHHHHHHHcCCHHHHHHHHHHHH
Q 007400 342 FLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKE----------NSMLWNTMISALTQHGYDEQAIRLFHDMV 411 (605)
Q Consensus 342 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----------~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 411 (605)
.+.+.+ +-.+.+.....++|.+.|++.....++..+.+.. ...+|+.+++-....+..+.-...|+...
T Consensus 178 ~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~p 256 (400)
T COG3071 178 QLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQP 256 (400)
T ss_pred HHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhcc
Confidence 555554 3444555555566666666666666655554320 12356666665555555555555666655
Q ss_pred HCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHchHhhCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhC--CCCCCHHH
Q 007400 412 RSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKM--PYEHDSYL 489 (605)
Q Consensus 412 ~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~~~~~~ 489 (605)
.. .+-++..-..++.-+..+|+.++|.++.++.. +.+.+|+... .-...+-++...-++..++. ..+.++..
T Consensus 257 r~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~L-k~~~D~~L~~----~~~~l~~~d~~~l~k~~e~~l~~h~~~p~L 330 (400)
T COG3071 257 RK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDAL-KRQWDPRLCR----LIPRLRPGDPEPLIKAAEKWLKQHPEDPLL 330 (400)
T ss_pred HH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHH-HhccChhHHH----HHhhcCCCCchHHHHHHHHHHHhCCCChhH
Confidence 44 45556666777777788888888888888887 4466665111 11234455655555555543 12355678
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 007400 490 WNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINE 549 (605)
Q Consensus 490 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 549 (605)
+.+|+..|.+++.+.+|.+.|+.+++..| +...|..++.++.+.|+..+|.+++++...
T Consensus 331 ~~tLG~L~~k~~~w~kA~~~leaAl~~~~-s~~~~~~la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 331 LSTLGRLALKNKLWGKASEALEAALKLRP-SASDYAELADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHhcCC-ChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 88889999999999999999999998888 888899999999999999999988887763
No 55
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.51 E-value=3.4e-09 Score=101.80 Aligned_cols=156 Identities=13% Similarity=0.131 Sum_probs=96.6
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhc---cCcHHHHHHHHHHchHhhCCCCC--HHHHHHHHHHHHhcCC
Q 007400 397 HGYDEQAIRLFHDMVRSSVKPDKI-TLAVILNACTH---SGLVQEGLTYFESMTHDLGIIPN--QEHHACLIELLAQAGC 470 (605)
Q Consensus 397 ~g~~~~a~~~~~~m~~~~~~p~~~-~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~ 470 (605)
+.-++++.++|++-+..=..|+.. .|+..+.-+.+ ...++.|..+|+++. + +.+|. ...|-.....-.+-|-
T Consensus 524 h~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL-~-~Cpp~~aKtiyLlYA~lEEe~GL 601 (835)
T KOG2047|consen 524 HKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQAL-D-GCPPEHAKTIYLLYAKLEEEHGL 601 (835)
T ss_pred hHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH-h-cCCHHHHHHHHHHHHHHHHHhhH
Confidence 344555555555554432234442 55555444332 345788888888888 4 66665 2233333344455677
Q ss_pred hHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC--chHHHHHHHHHhcCCchHHHHHH
Q 007400 471 SDQLMNQLEKMPYEHD----SYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSS--ATHGLLSSIYSALGKGRLVEKVR 544 (605)
Q Consensus 471 ~~~A~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~--~~~~~l~~~~~~~g~~~~a~~~~ 544 (605)
...|+.++++....-. ...|+.++.-....=-....+.+|+++++.-|++. ......+++-.+.|..+.|..++
T Consensus 602 ar~amsiyerat~~v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~Lp~~~~r~mclrFAdlEtklGEidRARaIy 681 (835)
T KOG2047|consen 602 ARHAMSIYERATSAVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIESLPDSKAREMCLRFADLETKLGEIDRARAIY 681 (835)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHhCChHHHHHHHHHHHHHhhhhhhHHHHHHHH
Confidence 8888888888742222 23555555443333345667889999999988543 34456788889999999999999
Q ss_pred HHHHhCCCcC
Q 007400 545 QLINERQFKK 554 (605)
Q Consensus 545 ~~~~~~~~~~ 554 (605)
....+-..+.
T Consensus 682 a~~sq~~dPr 691 (835)
T KOG2047|consen 682 AHGSQICDPR 691 (835)
T ss_pred HhhhhcCCCc
Confidence 8776554333
No 56
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.45 E-value=8.1e-09 Score=94.04 Aligned_cols=273 Identities=12% Similarity=0.046 Sum_probs=191.2
Q ss_pred CcchHHHHHHHHHhcCChHHHHHHHhhCCCCChhhH---HHHHHHHHhCCChHHHHHHHHHHHHCCCCCChHHHHHHHHH
Q 007400 250 DVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSW---TTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCA 326 (605)
Q Consensus 250 ~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 326 (605)
|......+...+...|+.++|+..|++...-|+.+. ....-.+.+.|+.+....+...+.... .-+...|..-+..
T Consensus 231 NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~ 309 (564)
T KOG1174|consen 231 NEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQL 309 (564)
T ss_pred cHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhh
Confidence 444445555555555555555566655544333222 122333456677777776666665421 1222223233333
Q ss_pred HhcccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcC--CCCCcchHHHHHHHHHHcCCHHHHH
Q 007400 327 CASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTD--NKENSMLWNTMISALTQHGYDEQAI 404 (605)
Q Consensus 327 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~ 404 (605)
....+++..|..+-++.++.+ +.+...+-.-...+...|+.++|.-.|+... .+-+..+|..|+.+|...|++.+|.
T Consensus 310 l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~ 388 (564)
T KOG1174|consen 310 LYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEAN 388 (564)
T ss_pred hhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHH
Confidence 445667777777777777655 4455555555677888899999999898655 2347789999999999999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHH-HHHh-ccCcHHHHHHHHHHchHhhCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHhC
Q 007400 405 RLFHDMVRSSVKPDKITLAVIL-NACT-HSGLVQEGLTYFESMTHDLGIIPN-QEHHACLIELLAQAGCSDQLMNQLEKM 481 (605)
Q Consensus 405 ~~~~~m~~~~~~p~~~~~~~l~-~~~~-~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~ 481 (605)
.+-+...+. +..+..+...+. ..|. ...--++|..+++... .+.|+ ......+...+...|..++++.++++.
T Consensus 389 ~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L---~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~ 464 (564)
T KOG1174|consen 389 ALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSL---KINPIYTPAVNLIAELCQVEGPTKDIIKLLEKH 464 (564)
T ss_pred HHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhh---ccCCccHHHHHHHHHHHHhhCccchHHHHHHHH
Confidence 888776664 344566666663 3333 3344588999999877 67888 678888999999999999999999986
Q ss_pred -CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHH
Q 007400 482 -PYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLS 528 (605)
Q Consensus 482 -~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 528 (605)
...||....+.|+..++..+.+.+|.+.|..+++++|++..+...|-
T Consensus 465 L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl~Gl~ 512 (564)
T KOG1174|consen 465 LIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTLRGLR 512 (564)
T ss_pred HhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHHHHHHH
Confidence 46789999999999999999999999999999999998776655443
No 57
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.44 E-value=3.6e-11 Score=110.00 Aligned_cols=198 Identities=14% Similarity=0.066 Sum_probs=162.8
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhcCC--CCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 007400 351 NTIVMSSLIDMYSKCGCLNDGRQVFDLTDN--KENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNA 428 (605)
Q Consensus 351 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~ 428 (605)
....+..+...+...|++++|.+.++.... +.+...+..+...+...|++++|.+.+++..+.. +.+...+..+...
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~ 108 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 355677788888899999999999886542 2246677888889999999999999999998853 2355678888889
Q ss_pred HhccCcHHHHHHHHHHchHhhCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHH
Q 007400 429 CTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMP--YEHDSYLWNALHGVCRIHGNIDMG 506 (605)
Q Consensus 429 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A 506 (605)
+...|++++|...++++............+..+..++...|++++|...+++.. .+.+...+..++..+...|++++|
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 188 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDA 188 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHH
Confidence 999999999999999998332222335677788899999999999999998862 234567888899999999999999
Q ss_pred HHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 007400 507 RKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINE 549 (605)
Q Consensus 507 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 549 (605)
...++++++..|.++..+..++.++...|+.++|..+.+.+..
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 189 RAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 9999999999888888889999999999999999999887754
No 58
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.43 E-value=1.2e-09 Score=99.35 Aligned_cols=203 Identities=12% Similarity=0.081 Sum_probs=136.7
Q ss_pred CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhcccchHHHHHHHHHHHHcCCCCChhHHHHHH
Q 007400 280 KNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLI 359 (605)
Q Consensus 280 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 359 (605)
.++........+|.+.|++..+..++..|.+.|+-.+...-. ....++..++
T Consensus 185 r~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~----------------------------le~~a~~glL 236 (400)
T COG3071 185 RHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAAR----------------------------LEQQAWEGLL 236 (400)
T ss_pred CChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHH----------------------------HHHHHHHHHH
Confidence 466677777788888888888888888888877554432210 0112333344
Q ss_pred HHHHhcCChHHHHHHHHhcCC--CCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHH
Q 007400 360 DMYSKCGCLNDGRQVFDLTDN--KENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQE 437 (605)
Q Consensus 360 ~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~ 437 (605)
+-....+..+.-...++..+. +.++..-.+++.-+.+.|+.++|.++.++..+.+..|+ ....-.+.+.++...
T Consensus 237 ~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~----L~~~~~~l~~~d~~~ 312 (400)
T COG3071 237 QQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR----LCRLIPRLRPGDPEP 312 (400)
T ss_pred HHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh----HHHHHhhcCCCCchH
Confidence 333333444444445555542 23566666777778888888888888888888776666 222234556677666
Q ss_pred HHHHHHHchHhhCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 007400 438 GLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKM-PYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQ 516 (605)
Q Consensus 438 a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 516 (605)
-++..+.-.+..+..| ..+..|+..|.+.+.+.+|...|+.. ...|+...|+-++.++.+.|+..+|.+..++.+..
T Consensus 313 l~k~~e~~l~~h~~~p--~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 313 LIKAAEKWLKQHPEDP--LLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred HHHHHHHHHHhCCCCh--hHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 6666666654434444 67788888888888888888888864 46788888888888888888888888888888754
No 59
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.43 E-value=1.4e-10 Score=101.97 Aligned_cols=263 Identities=12% Similarity=0.107 Sum_probs=161.9
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHCCCCCCh------HHHHHHHHHHhcccchHHHHHHHHHHHHcCCCCChhHHHHHHH
Q 007400 287 TLIAGYTRNGLGQKALELFTRMMILRIRPNQ------HTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLID 360 (605)
Q Consensus 287 ~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 360 (605)
+|.+.|.+.|..+.|+.+-+.+... ||. .....|..-|...|-++.|+.+|..+.+.+ ..-......|+.
T Consensus 74 tLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~-efa~~AlqqLl~ 149 (389)
T COG2956 74 TLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRLLALQQLGRDYMAAGLLDRAEDIFNQLVDEG-EFAEGALQQLLN 149 (389)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcch-hhhHHHHHHHHH
Confidence 3444455555555555555444432 221 112223333444555555555555555433 223334455666
Q ss_pred HHHhcCChHHHHHHHHhcCC---CCC----cchHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhcc
Q 007400 361 MYSKCGCLNDGRQVFDLTDN---KEN----SMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDK-ITLAVILNACTHS 432 (605)
Q Consensus 361 ~~~~~g~~~~A~~~~~~~~~---~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~ 432 (605)
.|-...++++|+++-+++.. .+. ...|.-+...+....+.+.|..++.+..+. .|+. ..-..+.+.....
T Consensus 150 IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa--~~~cvRAsi~lG~v~~~~ 227 (389)
T COG2956 150 IYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQA--DKKCVRASIILGRVELAK 227 (389)
T ss_pred HHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhh--CccceehhhhhhHHHHhc
Confidence 66666666666666554332 111 123555666667778888999999988884 4544 3555667788888
Q ss_pred CcHHHHHHHHHHchHhhCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 007400 433 GLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKM-PYEHDSYLWNALHGVCRIHGNIDMGRKVVD 511 (605)
Q Consensus 433 g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 511 (605)
|+++.|.+.|+.+. +.+..--..+...|..+|...|+.++....+.++ ...+....-..+...-....-.+.|...+.
T Consensus 228 g~y~~AV~~~e~v~-eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~~~l~l~~lie~~~G~~~Aq~~l~ 306 (389)
T COG2956 228 GDYQKAVEALERVL-EQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGADAELMLADLIELQEGIDAAQAYLT 306 (389)
T ss_pred cchHHHHHHHHHHH-HhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCccHHHHHHHHHHHhhChHHHHHHHH
Confidence 99999999999888 3233333677888889999999999999888775 344555555666665566666788888888
Q ss_pred HHHhcCCCCCchHHHHHHHHHh---cCCchHHHHHHHHHHhCCCcCCCc
Q 007400 512 QLIDQNPQSSATHGLLSSIYSA---LGKGRLVEKVRQLINERQFKKEQA 557 (605)
Q Consensus 512 ~~~~~~p~~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~~~~~~~ 557 (605)
+-+...| +...+..+++.... .|.+.+-...++.|....++..|.
T Consensus 307 ~Ql~r~P-t~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge~l~~~~~ 354 (389)
T COG2956 307 RQLRRKP-TMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGEQLRRKPR 354 (389)
T ss_pred HHHhhCC-cHHHHHHHHHhhhccccccchhhhHHHHHHHHHHHHhhcCC
Confidence 8888888 45555555544432 345666677777776665655554
No 60
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.42 E-value=6e-09 Score=99.32 Aligned_cols=252 Identities=13% Similarity=0.168 Sum_probs=149.4
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHCCCCCChHHHHHHH---HHHhcccch-H-------------HHHHHHHHHHHcCC
Q 007400 286 TTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCL---CACASIVSL-K-------------HGKQVHGFLIRTNF 348 (605)
Q Consensus 286 ~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll---~~~~~~~~~-~-------------~a~~~~~~~~~~~~ 348 (605)
..|..++...|+..+|..+|...++.. .+|........ -++..-.++ + .+...+..+....
T Consensus 228 vQlayVlQ~~Gqt~ea~~iy~~~i~~~-~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~q- 305 (652)
T KOG2376|consen 228 VQLAYVLQLQGQTAEASSIYVDIIKRN-PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQ- 305 (652)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHHhc-CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHH-
Confidence 345556777888888888888888764 34432221111 111111111 1 1111111111110
Q ss_pred CCChhHHHHHHHHHHhcCChHHHHHHHHhcCCCCCcchHHHHHHHHH--HcCCHHHHHHHHHHHHHCCCCCC--HHHHHH
Q 007400 349 RSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALT--QHGYDEQAIRLFHDMVRSSVKPD--KITLAV 424 (605)
Q Consensus 349 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~--~~g~~~~a~~~~~~m~~~~~~p~--~~~~~~ 424 (605)
......-+.++..|. +.-+.+.++...++..-....+.+++..+. +......+.+++...-+. .|. ......
T Consensus 306 k~~i~~N~~lL~l~t--nk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~--~p~~s~~v~L~ 381 (652)
T KOG2376|consen 306 KQAIYRNNALLALFT--NKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADG--HPEKSKVVLLL 381 (652)
T ss_pred HHHHHHHHHHHHHHh--hhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcc--CCchhHHHHHH
Confidence 111111223333333 455667777777665422344455554432 333577888888887774 343 345566
Q ss_pred HHHHHhccCcHHHHHHHHH--------HchHhhCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhC--------CCCCC-H
Q 007400 425 ILNACTHSGLVQEGLTYFE--------SMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKM--------PYEHD-S 487 (605)
Q Consensus 425 l~~~~~~~g~~~~a~~~~~--------~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~--------~~~~~-~ 487 (605)
.+......|+++.|..++. .+. +.+. .+.+...+...+.+.++.+-|.+++.+. ...+. .
T Consensus 382 ~aQl~is~gn~~~A~~il~~~~~~~~ss~~-~~~~--~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~ 458 (652)
T KOG2376|consen 382 RAQLKISQGNPEVALEILSLFLESWKSSIL-EAKH--LPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALL 458 (652)
T ss_pred HHHHHHhcCCHHHHHHHHHHHhhhhhhhhh-hhcc--ChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHH
Confidence 6667788999999999999 554 3233 3456667888888888777666666543 11211 2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHH
Q 007400 488 YLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLI 547 (605)
Q Consensus 488 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 547 (605)
..+..++..-.++|+.++|..+++++++.+|++......+..+|.+. +.+.|..+-+.+
T Consensus 459 ~~~~~aa~f~lr~G~~~ea~s~leel~k~n~~d~~~l~~lV~a~~~~-d~eka~~l~k~L 517 (652)
T KOG2376|consen 459 SLMREAAEFKLRHGNEEEASSLLEELVKFNPNDTDLLVQLVTAYARL-DPEKAESLSKKL 517 (652)
T ss_pred hHHHHHhHHHHhcCchHHHHHHHHHHHHhCCchHHHHHHHHHHHHhc-CHHHHHHHhhcC
Confidence 23344455556789999999999999999999999999999999875 456666655443
No 61
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.40 E-value=5.3e-10 Score=98.40 Aligned_cols=286 Identities=10% Similarity=0.123 Sum_probs=133.6
Q ss_pred hcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCC---hhHHHHHHHHHHhcCChHH
Q 007400 162 KSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSN---VVISSSIVDAYAKCGELSD 238 (605)
Q Consensus 162 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~ 238 (605)
-+++.++|.++|-+|.+.. +-+..+..++.+.|.+.|..++|..+++.+.++.--+. ......|..-|...|-+|.
T Consensus 47 Ls~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DR 125 (389)
T COG2956 47 LSNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDR 125 (389)
T ss_pred hhcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhH
Confidence 3467777777777776611 11223345555666666666666666666655421111 1122233333444444444
Q ss_pred HHHHHhhcCCCCcchHHHHHHHHHhcCChHHHHHHHhhCCCC---ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC
Q 007400 239 ARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEK---NPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRP 315 (605)
Q Consensus 239 a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p 315 (605)
|+ .+|..+.+. -..+...|+..|-+..+|++|+++-+++.+.+-.+
T Consensus 126 AE-------------------------------~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~ 174 (389)
T COG2956 126 AE-------------------------------DIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQT 174 (389)
T ss_pred HH-------------------------------HHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCcc
Confidence 44 444444332 12234445566666666666666666666544333
Q ss_pred ChH----HHHHHHHHHhcccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCCCCCcchHHHHH
Q 007400 316 NQH----TFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMI 391 (605)
Q Consensus 316 ~~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~ 391 (605)
... .|.-+...+....+.+.|...++++.+.+ +. .+..--.+.
T Consensus 175 ~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~-~~--------------------------------cvRAsi~lG 221 (389)
T COG2956 175 YRVEIAQFYCELAQQALASSDVDRARELLKKALQAD-KK--------------------------------CVRASIILG 221 (389)
T ss_pred chhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhC-cc--------------------------------ceehhhhhh
Confidence 221 12222222222333333333333333322 11 222333344
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHchHhhCCCCCHHHHHHHHHHHHhcCCh
Q 007400 392 SALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCS 471 (605)
Q Consensus 392 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 471 (605)
+.+...|+++.|++.|+...+.+..--+.+...|..+|...|+.++...++.++. ...+....-..+.+.-....-.
T Consensus 222 ~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~---~~~~g~~~~l~l~~lie~~~G~ 298 (389)
T COG2956 222 RVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAM---ETNTGADAELMLADLIELQEGI 298 (389)
T ss_pred HHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH---HccCCccHHHHHHHHHHHhhCh
Confidence 4555556666666666665554322223355555566666666666666666555 2223333333333333333333
Q ss_pred HHHHHHH-HhCCCCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHh
Q 007400 472 DQLMNQL-EKMPYEHDSYLWNALHGVCRI---HGNIDMGRKVVDQLID 515 (605)
Q Consensus 472 ~~A~~~~-~~~~~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~ 515 (605)
+.|...+ +.+..+|+...+..++..-.. -|...+.+..+++|+.
T Consensus 299 ~~Aq~~l~~Ql~r~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvg 346 (389)
T COG2956 299 DAAQAYLTRQLRRKPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVG 346 (389)
T ss_pred HHHHHHHHHHHhhCCcHHHHHHHHHhhhccccccchhhhHHHHHHHHH
Confidence 3333333 334445666666655554322 2334444555555543
No 62
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.39 E-value=1.7e-08 Score=99.40 Aligned_cols=490 Identities=11% Similarity=0.037 Sum_probs=272.8
Q ss_pred CChhHHHHHHHHHHHcCCCCChhhHHHHHHHhh---hcCChhHHHHHHHHHHHhCCCCCchhhHHHHH-----HHHHhcC
Q 007400 31 GQLSEAISSLDLLAQRGIRLPAETLAFILQQCA---ESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLI-----SMYFKCG 102 (605)
Q Consensus 31 g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~---~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~-----~~~~~~g 102 (605)
++++.++.-+......+.+.++.++..+...+. -.++.+++ .++..+...-..... .+.+++ .-..+.+
T Consensus 241 ~~~~~~i~s~~~~l~~~w~~~~l~ka~l~~~~~~f~~~~~~Ee~-~Lllli~es~i~Re~--~~d~ilslm~~~~k~r~~ 317 (799)
T KOG4162|consen 241 SGPKEAIKSYRRALLRSWSLDPLTKARLYKGFALFLPKSGQEEV-ILLLLIEESLIPREN--IEDAILSLMLLLRKLRLK 317 (799)
T ss_pred CCchHHHHhhhHHhhcccccchhHHHHHhhcccccCCCCcHHHH-HHHHHHHhhcccccc--HHHHHHHHHHHHHHHHHh
Confidence 556666666666666666666666666555443 33444444 222222222222111 222222 2222222
Q ss_pred ChhHHHHHhccCCCCCchHHHHHHHHHHccCChHHHHHHHhhcCC---CCceeHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 007400 103 SDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAE---RDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRF 179 (605)
Q Consensus 103 ~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 179 (605)
++ +.+...|..+.-++...|+++.+.+.|++... .....|+.+...+...|.-..|+.+++.-...
T Consensus 318 ~~-----------qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~ 386 (799)
T KOG4162|consen 318 KF-----------QNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKK 386 (799)
T ss_pred hh-----------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhccc
Confidence 22 23556777888888888999999999988764 34467888888888888888888888876653
Q ss_pred CCCCC-hhhHHHHHHHHh-ccCChHHHHHHHHHHHHhC--C--CCChhHHHHHHHHHHhcC-----------ChHHHHHH
Q 007400 180 SISCN-EFSFAGILTICV-KLEELKLTRQVHGQVLVTG--F--LSNVVISSSIVDAYAKCG-----------ELSDARRL 242 (605)
Q Consensus 180 ~~~p~-~~~~~~ll~~~~-~~~~~~~a~~~~~~~~~~~--~--~~~~~~~~~l~~~~~~~g-----------~~~~a~~~ 242 (605)
.-.|+ ...+-..-+.|. +.+.++++..+..++.+.. . ......|..+.-+|...- ...++.+.
T Consensus 387 ~~~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqa 466 (799)
T KOG4162|consen 387 SEQPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQA 466 (799)
T ss_pred ccCCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHH
Confidence 33343 333443444444 5677777777777766622 1 122334444444443321 11234444
Q ss_pred HhhcCCC---CcchHHHHHHHHHhcCChHHHHHHHhhCCC----CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC
Q 007400 243 FDETDAR---DVLTWTTMVSGYAKLGDMESASKLFNEMPE----KNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRP 315 (605)
Q Consensus 243 ~~~~~~~---~~~~~~~li~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p 315 (605)
+++..+. |+.+...+.--|+..++++.|.+..++..+ .+...|..++-.+...+++.+|+.+.+.....- .-
T Consensus 467 le~av~~d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~-~~ 545 (799)
T KOG4162|consen 467 LEEAVQFDPTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEF-GD 545 (799)
T ss_pred HHHHHhcCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHh-hh
Confidence 4444332 333333333445555555555555554332 244555555555555556666655555544320 11
Q ss_pred ChHHHHHHHHHHhcccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCC---CC-C-cchHHHH
Q 007400 316 NQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDN---KE-N-SMLWNTM 390 (605)
Q Consensus 316 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~-~-~~~~~~l 390 (605)
|......-+..-..-++.+++......+...= -+.. ..-..++-....+....+.- .| + ..++..+
T Consensus 546 N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~w--e~~~-------~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~l 616 (799)
T KOG4162|consen 546 NHVLMDGKIHIELTFNDREEALDTCIHKLALW--EAEY-------GVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYL 616 (799)
T ss_pred hhhhchhhhhhhhhcccHHHHHHHHHHHHHHH--Hhhh-------hHhhhhhhhhhhhhhcccccCcccccccchhhHHH
Confidence 11111111112222344444443333332210 0000 00011112222223322221 11 1 1222222
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCH--------HHHHHHHHHHhccCcHHHHHHHHHHchHhhCCCCC-HHHHHHH
Q 007400 391 ISALTQHGYDEQAIRLFHDMVRSSVKPDK--------ITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPN-QEHHACL 461 (605)
Q Consensus 391 ~~~~~~~g~~~~a~~~~~~m~~~~~~p~~--------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l 461 (605)
....... ...+..-.. +....+.|.+ ..|......+.+.+..++|...+.++. ++.|- ...|...
T Consensus 617 s~l~a~~--~~~~~se~~-Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~---~~~~l~~~~~~~~ 690 (799)
T KOG4162|consen 617 SSLVASQ--LKSAGSELK-LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEAS---KIDPLSASVYYLR 690 (799)
T ss_pred HHHHHhh--hhhcccccc-cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHH---hcchhhHHHHHHh
Confidence 2221111 111110000 2222233322 245556677888899999998988887 45554 6788888
Q ss_pred HHHHHhcCChHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCCHHHHHH--HHHHHHhcCCCCCchHHHHHHHHHhcCCc
Q 007400 462 IELLAQAGCSDQLMNQLEKM-PYE-HDSYLWNALHGVCRIHGNIDMGRK--VVDQLIDQNPQSSATHGLLSSIYSALGKG 537 (605)
Q Consensus 462 ~~~~~~~g~~~~A~~~~~~~-~~~-~~~~~~~~l~~~~~~~g~~~~A~~--~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 537 (605)
+..+...|..++|.+.|... ... .++.+..+++..+.+.|+...|.. ++..+++.+|.++.+|..++.++.+.|+.
T Consensus 691 G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~ 770 (799)
T KOG4162|consen 691 GLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDS 770 (799)
T ss_pred hHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccch
Confidence 88999999999999999875 233 457788999999999998888888 99999999999999999999999999999
Q ss_pred hHHHHHHHHHHhC
Q 007400 538 RLVEKVRQLINER 550 (605)
Q Consensus 538 ~~a~~~~~~~~~~ 550 (605)
++|.+.|+...+.
T Consensus 771 ~~Aaecf~aa~qL 783 (799)
T KOG4162|consen 771 KQAAECFQAALQL 783 (799)
T ss_pred HHHHHHHHHHHhh
Confidence 9999999988664
No 63
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.37 E-value=2e-11 Score=107.09 Aligned_cols=226 Identities=13% Similarity=0.133 Sum_probs=124.3
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhcccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhc
Q 007400 286 TTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKC 365 (605)
Q Consensus 286 ~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 365 (605)
+.+..+|.+.|.+.+|...++..++. .|-..||..+-..|.+..++..|..++.+-++.- +.++....-..+.+...
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~f-P~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSF-PFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcC-CchhhhhhhhHHHHHHH
Confidence 45666666666666666666665553 3444455555555555555555555555544432 22222223333444444
Q ss_pred CChHHHHHHHHhcCCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHH
Q 007400 366 GCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKP-DKITLAVILNACTHSGLVQEGLTYFES 444 (605)
Q Consensus 366 g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~ 444 (605)
++.++|.++|+...+. .| +......+...|...++++-|+.+|++
T Consensus 304 --------------------------------~~~~~a~~lYk~vlk~--~~~nvEaiAcia~~yfY~~~PE~AlryYRR 349 (478)
T KOG1129|consen 304 --------------------------------EQQEDALQLYKLVLKL--HPINVEAIACIAVGYFYDNNPEMALRYYRR 349 (478)
T ss_pred --------------------------------HhHHHHHHHHHHHHhc--CCccceeeeeeeeccccCCChHHHHHHHHH
Confidence 4444444444444442 22 223344444444444444445544444
Q ss_pred chHhhCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhCC---CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 007400 445 MTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMP---YEH--DSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQ 519 (605)
Q Consensus 445 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 519 (605)
+. ..|+ -+++.|..+.-+|.-.++++-++.-|++.. -+| -..+|..+.......||+..|.+.|+-++..+|+
T Consensus 350 iL-qmG~-~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~ 427 (478)
T KOG1129|consen 350 IL-QMGA-QSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQ 427 (478)
T ss_pred HH-HhcC-CChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcc
Confidence 44 2232 123444444444444444444444444431 112 2456777777777777888888888877777777
Q ss_pred CCchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 007400 520 SSATHGLLSSIYSALGKGRLVEKVRQLINER 550 (605)
Q Consensus 520 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 550 (605)
+..+++.|+..-.+.|+.++|..++....+.
T Consensus 428 h~ealnNLavL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 428 HGEALNNLAVLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred hHHHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence 7888888887777888888888777766543
No 64
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.37 E-value=5.4e-11 Score=99.74 Aligned_cols=162 Identities=14% Similarity=0.096 Sum_probs=138.5
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHchHhhCCCCC-HHHHHHHHH
Q 007400 386 LWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDK-ITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPN-QEHHACLIE 463 (605)
Q Consensus 386 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~ 463 (605)
+...|.-+|...|+...|..-+++.++ ..|+. .++..+...|.+.|..+.|.+.|+++. .+.|+ -++.|....
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~--~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAl---sl~p~~GdVLNNYG~ 111 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALE--HDPSYYLAHLVRAHYYQKLGENDLADESYRKAL---SLAPNNGDVLNNYGA 111 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHcCChhhHHHHHHHHH---hcCCCccchhhhhhH
Confidence 345566778999999999999999998 56754 588888889999999999999999988 66776 678899999
Q ss_pred HHHhcCChHHHHHHHHhCCCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchH
Q 007400 464 LLAQAGCSDQLMNQLEKMPYEH----DSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRL 539 (605)
Q Consensus 464 ~~~~~g~~~~A~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 539 (605)
.++..|++++|...|++....| -..+|..++.+..+.|+.+.|...|++.++.+|+.+.....++......|++..
T Consensus 112 FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~ 191 (250)
T COG3063 112 FLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAP 191 (250)
T ss_pred HHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchH
Confidence 9999999999999998874333 356788888888899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCC
Q 007400 540 VEKVRQLINERQF 552 (605)
Q Consensus 540 a~~~~~~~~~~~~ 552 (605)
|...++.....+.
T Consensus 192 Ar~~~~~~~~~~~ 204 (250)
T COG3063 192 ARLYLERYQQRGG 204 (250)
T ss_pred HHHHHHHHHhccc
Confidence 9999998887654
No 65
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.36 E-value=5e-10 Score=109.26 Aligned_cols=192 Identities=14% Similarity=0.095 Sum_probs=133.1
Q ss_pred HHHHHHHhcCChHHHHHHHHhcC-------CC--C-CcchHHHHHHHHHHcCCHHHHHHHHHHHHH-----CCC-CCCH-
Q 007400 357 SLIDMYSKCGCLNDGRQVFDLTD-------NK--E-NSMLWNTMISALTQHGYDEQAIRLFHDMVR-----SSV-KPDK- 419 (605)
Q Consensus 357 ~l~~~~~~~g~~~~A~~~~~~~~-------~~--~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~-----~~~-~p~~- 419 (605)
.+...|...+++.+|..+|+++. .. | -..+++.|..+|.+.|++++|...+++..+ .|. .|..
T Consensus 246 ~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~ 325 (508)
T KOG1840|consen 246 ILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVA 325 (508)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHH
Confidence 34555666666666666665432 11 1 123566666677777777776666655442 111 2222
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHchHhhC--CCC---C-HHHHHHHHHHHHhcCChHHHHHHHHhCC-------C--C
Q 007400 420 ITLAVILNACTHSGLVQEGLTYFESMTHDLG--IIP---N-QEHHACLIELLAQAGCSDQLMNQLEKMP-------Y--E 484 (605)
Q Consensus 420 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~p---~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~--~ 484 (605)
..++.+...|...+++++|..+++...+-.. +.+ . ..+++.|...|...|++++|.++++++- . .
T Consensus 326 ~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~ 405 (508)
T KOG1840|consen 326 AQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKD 405 (508)
T ss_pred HHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcC
Confidence 2566667778888888888888887654322 222 2 4688999999999999999999998761 1 1
Q ss_pred C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc----C---CCCCchHHHHHHHHHhcCCchHHHHHHHHHH
Q 007400 485 H-DSYLWNALHGVCRIHGNIDMGRKVVDQLIDQ----N---PQSSATHGLLSSIYSALGKGRLVEKVRQLIN 548 (605)
Q Consensus 485 ~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~---p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 548 (605)
+ ....++.++..|.+.+++.+|.++|.+.... . |+...+|..|+.+|.+.|++++|.++.+.+.
T Consensus 406 ~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 406 YGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred hhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 2 2456778899999999999999999988765 3 4445678899999999999999999988875
No 66
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.35 E-value=9.4e-08 Score=92.42 Aligned_cols=213 Identities=14% Similarity=0.061 Sum_probs=118.0
Q ss_pred hcCChhHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCChhHHHHHhccCCCC---CchHHHHHHHHHHccCChHHHHH
Q 007400 64 ESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVK---NLFSYNNMLSGYANLGMMKHARN 140 (605)
Q Consensus 64 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~A~~ 140 (605)
..+.+...++..+.+++..+..... .....-.+...|+-++|......-... +.+.|..+.-.+-...++++|+.
T Consensus 19 E~kQYkkgLK~~~~iL~k~~eHges--lAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiK 96 (700)
T KOG1156|consen 19 ETKQYKKGLKLIKQILKKFPEHGES--LAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIK 96 (700)
T ss_pred HHHHHHhHHHHHHHHHHhCCccchh--HHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHH
Confidence 4455666666666666654444432 222222334456666666555554432 33455555555555666677777
Q ss_pred HHhhcCC---CCceeHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-hhhHHHHHHHHhccCChHHHHHHHHHHHHhCC
Q 007400 141 LFDNMAE---RDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCN-EFSFAGILTICVKLEELKLTRQVHGQVLVTGF 216 (605)
Q Consensus 141 ~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 216 (605)
.|..... .|...|.-+.-.-++.++++...+....+.+ ..|+ ...|..+..+..-.|+...|..++++..+...
T Consensus 97 cy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLq--l~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~ 174 (700)
T KOG1156|consen 97 CYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQ--LRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQN 174 (700)
T ss_pred HHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHH--hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 7666542 3445555555555566666666666666655 2233 33455566666666777777777777766542
Q ss_pred -CCChhHHHHHH------HHHHhcCChHHHHHHHhhcCCC--Ccch-HHHHHHHHHhcCChHHHHHHHhhCCCC
Q 007400 217 -LSNVVISSSIV------DAYAKCGELSDARRLFDETDAR--DVLT-WTTMVSGYAKLGDMESASKLFNEMPEK 280 (605)
Q Consensus 217 -~~~~~~~~~l~------~~~~~~g~~~~a~~~~~~~~~~--~~~~-~~~li~~~~~~~~~~~A~~~~~~~~~~ 280 (605)
.|+...+.... ....+.|..+.|.+.+...... |-.. -..-...+.+.+++++|..++..+..+
T Consensus 175 ~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r 248 (700)
T KOG1156|consen 175 TSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER 248 (700)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh
Confidence 34444443222 2345567777777666655443 2222 223344566667777777777766653
No 67
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.34 E-value=3.4e-08 Score=95.40 Aligned_cols=466 Identities=12% Similarity=0.103 Sum_probs=277.6
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHhhhcCChhHHHHHHHHHHHhCCCCCchhhHHHHHHH
Q 007400 18 NCLIQSFLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISM 97 (605)
Q Consensus 18 ~~~~~~~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 97 (605)
+.++.-.+.+.+.+++...+.+.+..++. .+-...|+....-.+...|+-++|.......++..+..+. +|..+.-.
T Consensus 8 ~~lF~~~lk~yE~kQYkkgLK~~~~iL~k-~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~v--CwHv~gl~ 84 (700)
T KOG1156|consen 8 NALFRRALKCYETKQYKKGLKLIKQILKK-FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHV--CWHVLGLL 84 (700)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHh-CCccchhHHhccchhhcccchHHHHHHHHHHhccCcccch--hHHHHHHH
Confidence 46677777888999999999999988773 3444555555544555668999999988877776544444 78888777
Q ss_pred HHhcCChhHHHHHhccCCC---CCchHHHHHHHHHHccCChHHHHHHHhhcCC---CCceeHHHHHHHHHhcCChHHHHH
Q 007400 98 YFKCGSDVDARKVFDKIPV---KNLFSYNNMLSGYANLGMMKHARNLFDNMAE---RDVVSWNTMIIGYAKSGAVEEGLK 171 (605)
Q Consensus 98 ~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~ 171 (605)
+....++++|+++|..... .|...+.-+.-.-++.|+++..........+ ..-..|..+..++.-.|++..|..
T Consensus 85 ~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~ 164 (700)
T KOG1156|consen 85 QRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALE 164 (700)
T ss_pred HhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888999999999998763 3556666666566667777777766666553 244678888889999999999999
Q ss_pred HHHHHHhCCC-CCChhhHHHHHH------HHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHh
Q 007400 172 FYKVLRRFSI-SCNEFSFAGILT------ICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFD 244 (605)
Q Consensus 172 ~~~~m~~~~~-~p~~~~~~~ll~------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 244 (605)
+++...+... .|+...|.-... .....|.++.|.+.+...... +......-..-...+.+.+++++|..++.
T Consensus 165 il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~Dkla~~e~ka~l~~kl~~lEeA~~~y~ 243 (700)
T KOG1156|consen 165 ILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IVDKLAFEETKADLLMKLGQLEEAVKVYR 243 (700)
T ss_pred HHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HHHHHHHhhhHHHHHHHHhhHHhHHHHHH
Confidence 9999987553 466665543332 334677778887776655433 22123333455677889999999999999
Q ss_pred hcCCCCcc---hHHHHHHHHHhcCChHHHH-HHHhhCCCC---ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCh
Q 007400 245 ETDARDVL---TWTTMVSGYAKLGDMESAS-KLFNEMPEK---NPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQ 317 (605)
Q Consensus 245 ~~~~~~~~---~~~~li~~~~~~~~~~~A~-~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 317 (605)
.+..+++. .|-.+..++.+..+.-++. .+|....+. ....-..=+.......-.+..-.++..+.+.|+++-.
T Consensus 244 ~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf 323 (700)
T KOG1156|consen 244 RLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVF 323 (700)
T ss_pred HHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchh
Confidence 99887553 3334445554333333333 555554431 1101111111111122234445666777777766544
Q ss_pred HHHHHHHHHHhcccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhc-CCCCCcchHH--HHHHHH
Q 007400 318 HTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLT-DNKENSMLWN--TMISAL 394 (605)
Q Consensus 318 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~--~l~~~~ 394 (605)
..+.++-. ... ... ++++.. ..|...-.........+.- .++|....|+ .++..+
T Consensus 324 ~dl~SLyk---~p~---k~~-~le~Lv---------------t~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~ 381 (700)
T KOG1156|consen 324 KDLRSLYK---DPE---KVA-FLEKLV---------------TSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHY 381 (700)
T ss_pred hhhHHHHh---chh---HhH-HHHHHH---------------HHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHH
Confidence 43332221 111 110 222211 1111100000000000000 2334444443 355666
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCcHHHHHHHHHHchHhhCC-CCCHHHHHHHHHHHHhcCChH
Q 007400 395 TQHGYDEQAIRLFHDMVRSSVKPDKI-TLAVILNACTHSGLVQEGLTYFESMTHDLGI-IPNQEHHACLIELLAQAGCSD 472 (605)
Q Consensus 395 ~~~g~~~~a~~~~~~m~~~~~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~ 472 (605)
-..|+++.|..+++..+. -.|+.+ -|..-.+.+...|+++.|..++++.. ++ .||..+-...++...++.+.+
T Consensus 382 D~~g~~~~A~~yId~AId--HTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~---elD~aDR~INsKcAKYmLrAn~i~ 456 (700)
T KOG1156|consen 382 DKLGDYEVALEYIDLAID--HTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQ---ELDTADRAINSKCAKYMLRANEIE 456 (700)
T ss_pred HHcccHHHHHHHHHHHhc--cCchHHHHHHHHHHHHHhcCChHHHHHHHHHHH---hccchhHHHHHHHHHHHHHccccH
Confidence 777778888877777776 356654 56666677777778888887777776 33 234444445666677777777
Q ss_pred HHHHHHHhCCCCC-C--------HHHHHHH--HHHHHhcCCHHHHHHHHHHHH
Q 007400 473 QLMNQLEKMPYEH-D--------SYLWNAL--HGVCRIHGNIDMGRKVVDQLI 514 (605)
Q Consensus 473 ~A~~~~~~~~~~~-~--------~~~~~~l--~~~~~~~g~~~~A~~~~~~~~ 514 (605)
+|.++........ + ..+|..+ +.+|.++|++..|++-|..+-
T Consensus 457 eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~ 509 (700)
T KOG1156|consen 457 EAEEVLSKFTREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEIE 509 (700)
T ss_pred HHHHHHHHhhhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhHH
Confidence 7777766553111 1 1234333 456667777776666555443
No 68
>PRK12370 invasion protein regulator; Provisional
Probab=99.34 E-value=5.6e-10 Score=114.56 Aligned_cols=246 Identities=11% Similarity=0.080 Sum_probs=178.4
Q ss_pred CChHHHHHHHHHHHHCCCCCCh-HHHHHHHHHHh---------cccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhc
Q 007400 296 GLGQKALELFTRMMILRIRPNQ-HTFSSCLCACA---------SIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKC 365 (605)
Q Consensus 296 g~~~~a~~~~~~m~~~g~~p~~-~~~~~ll~~~~---------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 365 (605)
+..++|+..|++..+. .|+. ..+..+..++. ..+++++|...++++.+.+ +.+...+..+..++...
T Consensus 275 ~~~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~ 351 (553)
T PRK12370 275 YSLQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIH 351 (553)
T ss_pred HHHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHc
Confidence 3467888999888874 4544 34444443332 2345789999999999886 66778888888999999
Q ss_pred CChHHHHHHHHhcCC-CC-CcchHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCcHHHHHHHH
Q 007400 366 GCLNDGRQVFDLTDN-KE-NSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKI-TLAVILNACTHSGLVQEGLTYF 442 (605)
Q Consensus 366 g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~-~~~~l~~~~~~~g~~~~a~~~~ 442 (605)
|++++|...|++... .| +...+..+...+...|++++|+..+++..+ +.|+.. .+..++..+...|++++|...+
T Consensus 352 g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~--l~P~~~~~~~~~~~~~~~~g~~eeA~~~~ 429 (553)
T PRK12370 352 SEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLK--LDPTRAAAGITKLWITYYHTGIDDAIRLG 429 (553)
T ss_pred cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCChhhHHHHHHHHHhccCHHHHHHHH
Confidence 999999999997553 23 566788889999999999999999999999 566543 3344455566789999999999
Q ss_pred HHchHhhCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHhCC-CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 007400 443 ESMTHDLGIIPN-QEHHACLIELLAQAGCSDQLMNQLEKMP-YEHD-SYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQ 519 (605)
Q Consensus 443 ~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 519 (605)
+++... ..|+ +..+..+..++...|++++|...++++. ..|+ ...++.+...+...| +.|...++++++..-.
T Consensus 430 ~~~l~~--~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~ 505 (553)
T PRK12370 430 DELRSQ--HLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQR 505 (553)
T ss_pred HHHHHh--ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhH
Confidence 998722 2343 5567788899999999999999998863 3344 344555666666666 5888888887775222
Q ss_pred CCchHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 007400 520 SSATHGLLSSIYSALGKGRLVEKVRQLINERQ 551 (605)
Q Consensus 520 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 551 (605)
.+.....+..+|.-.|+.+.+... +++.+.|
T Consensus 506 ~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 506 IDNNPGLLPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred hhcCchHHHHHHHHHhhhHHHHHH-HHhhccc
Confidence 222233377777778888888776 7776654
No 69
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.32 E-value=7.2e-11 Score=103.70 Aligned_cols=196 Identities=10% Similarity=0.064 Sum_probs=162.4
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHh-cCCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHh
Q 007400 353 IVMSSLIDMYSKCGCLNDGRQVFDL-TDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKI-TLAVILNACT 430 (605)
Q Consensus 353 ~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~-~~~~l~~~~~ 430 (605)
.--+.+..+|.+.|.+.+|...++. +...|-+.||..|-+.|.+.+++..|+.++.+-++ ..|-.+ ......+.+.
T Consensus 224 wWk~Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld--~fP~~VT~l~g~ARi~e 301 (478)
T KOG1129|consen 224 WWKQQMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLD--SFPFDVTYLLGQARIHE 301 (478)
T ss_pred HHHHHHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhh--cCCchhhhhhhhHHHHH
Confidence 3345678889999999999998885 44567888999999999999999999999999888 456554 4556778888
Q ss_pred ccCcHHHHHHHHHHchHhhCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHH
Q 007400 431 HSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMP--YEHDSYLWNALHGVCRIHGNIDMGRK 508 (605)
Q Consensus 431 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~ 508 (605)
..++.++|.++|+...+ ....+++...++...|.-.++++-|+..+.++. ---++..|..++-+|.-.+++|-++.
T Consensus 302 am~~~~~a~~lYk~vlk--~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~ 379 (478)
T KOG1129|consen 302 AMEQQEDALQLYKLVLK--LHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLP 379 (478)
T ss_pred HHHhHHHHHHHHHHHHh--cCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHH
Confidence 99999999999999982 223347777788888889999999999998752 13577889999999999999999999
Q ss_pred HHHHHHhc--CCC-CCchHHHHHHHHHhcCCchHHHHHHHHHHhCCC
Q 007400 509 VVDQLIDQ--NPQ-SSATHGLLSSIYSALGKGRLVEKVRQLINERQF 552 (605)
Q Consensus 509 ~~~~~~~~--~p~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 552 (605)
.|++++.. +|+ -+..|+.++.+....|++..|.+.|+.....+.
T Consensus 380 sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~ 426 (478)
T KOG1129|consen 380 SFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDA 426 (478)
T ss_pred HHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCc
Confidence 99999987 343 457899999999999999999999998876553
No 70
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.31 E-value=2e-08 Score=98.95 Aligned_cols=420 Identities=14% Similarity=0.071 Sum_probs=265.3
Q ss_pred CCchhhHHHHHHHHHhcCChhHHHHHhccCCC---CCchHHHHHHHHHHccCChHHHHHHHhhcCC----CCceeHHHHH
Q 007400 85 TPTTFLSNHLISMYFKCGSDVDARKVFDKIPV---KNLFSYNNMLSGYANLGMMKHARNLFDNMAE----RDVVSWNTMI 157 (605)
Q Consensus 85 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~li 157 (605)
.+.. +|..+.-++.++|+++.+.+.|++... .....|..+...+...|.--.|..+++.... |+..+--.++
T Consensus 321 nd~a-i~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lma 399 (799)
T KOG4162|consen 321 NDAA-IFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMA 399 (799)
T ss_pred chHH-HHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHH
Confidence 3444 888888899999999999999999874 3457788888889999998999999988653 2222222222
Q ss_pred -HHHH-hcCChHHHHHHHHHHHhCC--C--CCChhhHHHHHHHHhcc----C-------ChHHHHHHHHHHHHhCCCCCh
Q 007400 158 -IGYA-KSGAVEEGLKFYKVLRRFS--I--SCNEFSFAGILTICVKL----E-------ELKLTRQVHGQVLVTGFLSNV 220 (605)
Q Consensus 158 -~~~~-~~~~~~~a~~~~~~m~~~~--~--~p~~~~~~~ll~~~~~~----~-------~~~~a~~~~~~~~~~~~~~~~ 220 (605)
..|. +.|..++++++-.+..... . ...+..|..+.-+|... . ...++.+.+++.++.+.. |.
T Consensus 400 sklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~-dp 478 (799)
T KOG4162|consen 400 SKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPT-DP 478 (799)
T ss_pred HHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCC-Cc
Confidence 3343 3477788887777766511 1 12333444444444321 1 234667777887776644 33
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHhhcCC----CCcchHHHHHHHHHhcCChHHHHHHHhhCCCCChhhHH---HHHHHHH
Q 007400 221 VISSSIVDAYAKCGELSDARRLFDETDA----RDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWT---TLIAGYT 293 (605)
Q Consensus 221 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~l~~~~~ 293 (605)
.+...+.--|+..++++.|.+..++... .+...|..+.-.+...+++.+|+.+.+...+....-|+ .-+..-.
T Consensus 479 ~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~~ 558 (799)
T KOG4162|consen 479 LVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIEL 558 (799)
T ss_pred hHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhhh
Confidence 3333345567778899999888877654 36788999999999999999999998877653222121 1122223
Q ss_pred hCCChHHHHHHHHHHHHC--CCCCChHHHHHHHHHHhcccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcC---Ch
Q 007400 294 RNGLGQKALELFTRMMIL--RIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCG---CL 368 (605)
Q Consensus 294 ~~g~~~~a~~~~~~m~~~--g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~ 368 (605)
.-++.++++.....+... ...+-..+.. .|....-..-+..... ...-.+.++..+.......+ ..
T Consensus 559 ~~~~~e~~l~t~~~~L~~we~~~~~q~~~~--------~g~~~~lk~~l~la~~-q~~~a~s~sr~ls~l~a~~~~~~~s 629 (799)
T KOG4162|consen 559 TFNDREEALDTCIHKLALWEAEYGVQQTLD--------EGKLLRLKAGLHLALS-QPTDAISTSRYLSSLVASQLKSAGS 629 (799)
T ss_pred hcccHHHHHHHHHHHHHHHHhhhhHhhhhh--------hhhhhhhhcccccCcc-cccccchhhHHHHHHHHhhhhhccc
Confidence 357777777776666541 0000000000 1111110000010111 11112223332222221111 11
Q ss_pred HHHHHHHHhcCCCCCc------chHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCcHHHHHHH
Q 007400 369 NDGRQVFDLTDNKENS------MLWNTMISALTQHGYDEQAIRLFHDMVRSSVKP-DKITLAVILNACTHSGLVQEGLTY 441 (605)
Q Consensus 369 ~~A~~~~~~~~~~~~~------~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~ 441 (605)
+.....+..... |+. ..|......+.+.+..++|...+.+... +.| ....|......+...|..++|.+.
T Consensus 630 e~~Lp~s~~~~~-~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~--~~~l~~~~~~~~G~~~~~~~~~~EA~~a 706 (799)
T KOG4162|consen 630 ELKLPSSTVLPG-PDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASK--IDPLSASVYYLRGLLLEVKGQLEEAKEA 706 (799)
T ss_pred ccccCcccccCC-CCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHh--cchhhHHHHHHhhHHHHHHHhhHHHHHH
Confidence 111111111111 221 2455666778888999999988888877 455 455788888888999999999999
Q ss_pred HHHchHhhCCCCC-HHHHHHHHHHHHhcCChHHHHH--HHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 007400 442 FESMTHDLGIIPN-QEHHACLIELLAQAGCSDQLMN--QLEKM-P-YEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQ 516 (605)
Q Consensus 442 ~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~--~~~~~-~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 516 (605)
|.... .+.|+ +.....+..++.+.|+..-|.. ++..+ . .+.+...|..++..+.+.|+.++|.+.|..++++
T Consensus 707 f~~Al---~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qL 783 (799)
T KOG4162|consen 707 FLVAL---ALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQL 783 (799)
T ss_pred HHHHH---hcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhh
Confidence 99887 77887 7789999999999998777776 77665 3 3457899999999999999999999999999999
Q ss_pred CCCCC
Q 007400 517 NPQSS 521 (605)
Q Consensus 517 ~p~~~ 521 (605)
.+.+|
T Consensus 784 e~S~P 788 (799)
T KOG4162|consen 784 EESNP 788 (799)
T ss_pred ccCCC
Confidence 76554
No 71
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.31 E-value=1.1e-08 Score=91.30 Aligned_cols=411 Identities=11% Similarity=0.064 Sum_probs=235.9
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHhhhcCChhHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCChh
Q 007400 26 SLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDV 105 (605)
Q Consensus 26 ~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 105 (605)
...+-|++++|+..|+.+.+.. .++......+.-+..-.|.+.+|..+-... +.+...-..+++.-.+.|+-+
T Consensus 66 C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka------~k~pL~~RLlfhlahklndEk 138 (557)
T KOG3785|consen 66 CYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQYIEAKSIAEKA------PKTPLCIRLLFHLAHKLNDEK 138 (557)
T ss_pred HHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHHHHHHHHHhhC------CCChHHHHHHHHHHHHhCcHH
Confidence 3446799999999999988765 466666666666666678888888774432 223313445555666677766
Q ss_pred HHHHHhccCCCCCchHHHHHHHHHHccCChHHHHHHHhhcCC--CCceeHHHHH-HHHHhcCChHHHHHHHHHHHhCCCC
Q 007400 106 DARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAE--RDVVSWNTMI-IGYAKSGAVEEGLKFYKVLRRFSIS 182 (605)
Q Consensus 106 ~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~li-~~~~~~~~~~~a~~~~~~m~~~~~~ 182 (605)
+-....+.+.. ....-.++.+...-.-.+.+|++++.++.. |+-...|.-+ -+|.+..-++-+.+++.-..+. +
T Consensus 139 ~~~~fh~~LqD-~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q-~- 215 (557)
T KOG3785|consen 139 RILTFHSSLQD-TLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ-F- 215 (557)
T ss_pred HHHHHHHHHhh-hHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-C-
Confidence 66655555443 334455566666666679999999999875 4445555544 5677888888888998887762 2
Q ss_pred CCh-hhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHh-----cCChHHHHHHHhhcCCCCcchHHH
Q 007400 183 CNE-FSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAK-----CGELSDARRLFDETDARDVLTWTT 256 (605)
Q Consensus 183 p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~g~~~~a~~~~~~~~~~~~~~~~~ 256 (605)
||+ ...|.......+.-+-..|++-.+.+...+-..-. .+.-.++ ..+-+.|++++-.+...=+..--.
T Consensus 216 pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~-----f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlN 290 (557)
T KOG3785|consen 216 PDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYP-----FIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLN 290 (557)
T ss_pred CCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccch-----hHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhh
Confidence 443 33443333333433444455544554444321111 1122222 234467777766655555555566
Q ss_pred HHHHHHhcCChHHHHHHHhhCCCCChhhHHHHHHHHHhCC-------ChHHHHHHHHHHHHCCCCCChH-HHHHHHHHHh
Q 007400 257 MVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNG-------LGQKALELFTRMMILRIRPNQH-TFSSCLCACA 328 (605)
Q Consensus 257 li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g-------~~~~a~~~~~~m~~~g~~p~~~-~~~~ll~~~~ 328 (605)
++--|.++++..+|..+.+.+...++.-|-.-.-.++..| +..-|.+.|+-.-..+...|.. .-..+..++.
T Consensus 291 L~iYyL~q~dVqeA~~L~Kdl~PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fF 370 (557)
T KOG3785|consen 291 LIIYYLNQNDVQEAISLCKDLDPTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFF 370 (557)
T ss_pred heeeecccccHHHHHHHHhhcCCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHH
Confidence 6777889999999999999987655554433333333433 3455556665554444433322 1223334444
Q ss_pred cccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCCC--CCcchHHH-HHHHHHHcCCHHHHHH
Q 007400 329 SIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNK--ENSMLWNT-MISALTQHGYDEQAIR 405 (605)
Q Consensus 329 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~-l~~~~~~~g~~~~a~~ 405 (605)
-..+++...-++..+...-...|...+ .+..+++..|++.+|+++|-.+..+ .|..+|.+ |.++|.+.+.++.|..
T Consensus 371 L~~qFddVl~YlnSi~sYF~NdD~Fn~-N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~ 449 (557)
T KOG3785|consen 371 LSFQFDDVLTYLNSIESYFTNDDDFNL-NLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWD 449 (557)
T ss_pred HHHHHHHHHHHHHHHHHHhcCcchhhh-HHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHH
Confidence 455666666666666554333333322 3566777777777777777665532 14444444 4456666777776665
Q ss_pred HHHHHHHCCCCCCHHHH-HHHHHHHhccCcHHHHHHHHHHchHhhCCCCCHHHH
Q 007400 406 LFHDMVRSSVKPDKITL-AVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHH 458 (605)
Q Consensus 406 ~~~~m~~~~~~p~~~~~-~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~ 458 (605)
++-++.. +.+..+. ..+..-|.+.+.+--|-..|+.+. ...|+++.|
T Consensus 450 ~~lk~~t---~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE---~lDP~pEnW 497 (557)
T KOG3785|consen 450 MMLKTNT---PSERFSLLQLIANDCYKANEFYYAAKAFDELE---ILDPTPENW 497 (557)
T ss_pred HHHhcCC---chhHHHHHHHHHHHHHHHHHHHHHHHhhhHHH---ccCCCcccc
Confidence 5433321 1122222 233344566666666666666655 445555544
No 72
>PRK12370 invasion protein regulator; Provisional
Probab=99.30 E-value=4.2e-10 Score=115.49 Aligned_cols=212 Identities=11% Similarity=0.038 Sum_probs=167.4
Q ss_pred cchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHh---------cCChHHHHHHHHhcCC--CCCcchHHHHHHHHHHcCC
Q 007400 331 VSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSK---------CGCLNDGRQVFDLTDN--KENSMLWNTMISALTQHGY 399 (605)
Q Consensus 331 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---------~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~ 399 (605)
++.++|...++++.+.. +.+...+..+..+|.. .+++++|...+++... +.+...+..+...+...|+
T Consensus 275 ~~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~ 353 (553)
T PRK12370 275 YSLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSE 353 (553)
T ss_pred HHHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccC
Confidence 45689999999999876 4455666666665542 2447899999987553 2367788888889999999
Q ss_pred HHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHchHhhCCCCCH-HHHHHHHHHHHhcCChHHHHHH
Q 007400 400 DEQAIRLFHDMVRSSVKPD-KITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQ-EHHACLIELLAQAGCSDQLMNQ 477 (605)
Q Consensus 400 ~~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~ 477 (605)
+++|+..|++.++ +.|+ ...+..+..++...|++++|...++++. ...|+. ..+..++..+...|++++|...
T Consensus 354 ~~~A~~~~~~Al~--l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al---~l~P~~~~~~~~~~~~~~~~g~~eeA~~~ 428 (553)
T PRK12370 354 YIVGSLLFKQANL--LSPISADIKYYYGWNLFMAGQLEEALQTINECL---KLDPTRAAAGITKLWITYYHTGIDDAIRL 428 (553)
T ss_pred HHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH---hcCCCChhhHHHHHHHHHhccCHHHHHHH
Confidence 9999999999999 5675 5578888999999999999999999998 456653 3334455567778999999999
Q ss_pred HHhCC--CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 007400 478 LEKMP--YEH-DSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINER 550 (605)
Q Consensus 478 ~~~~~--~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 550 (605)
+++.. .+| ++..+..++.++...|++++|...++++....|.+......++..|...| ++|...++.+.+.
T Consensus 429 ~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~ 502 (553)
T PRK12370 429 GDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLES 502 (553)
T ss_pred HHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHH
Confidence 98863 234 45567778888999999999999999998889988888888888988888 4888877777553
No 73
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.30 E-value=9.9e-10 Score=109.18 Aligned_cols=91 Identities=10% Similarity=0.173 Sum_probs=66.3
Q ss_pred HHHHHHHhCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhcCCCC
Q 007400 171 KFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARD 250 (605)
Q Consensus 171 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 250 (605)
.++-.+...|+.|+..||..+|..|+..|+.+.|- +|..|.....+.+...++.++......++.+.+. .+.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep~ 82 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EPL 82 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CCc
Confidence 35566677778888888888888888888877777 7777777666667777777777777777766655 556
Q ss_pred cchHHHHHHHHHhcCChHH
Q 007400 251 VLTWTTMVSGYAKLGDMES 269 (605)
Q Consensus 251 ~~~~~~li~~~~~~~~~~~ 269 (605)
+.+|..+..+|...|++..
T Consensus 83 aDtyt~Ll~ayr~hGDli~ 101 (1088)
T KOG4318|consen 83 ADTYTNLLKAYRIHGDLIL 101 (1088)
T ss_pred hhHHHHHHHHHHhccchHH
Confidence 6777777777777777544
No 74
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.27 E-value=1.8e-09 Score=98.63 Aligned_cols=198 Identities=18% Similarity=0.153 Sum_probs=101.7
Q ss_pred hhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhcccchHHHHHHHHHHHHcCCCCChhHHHHHHHH
Q 007400 282 PVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDM 361 (605)
Q Consensus 282 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 361 (605)
...+..+...+...|++++|...+++..+.. +.+...+..+...+...|+++.|...+++..+.. +.+...
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~------- 101 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDV------- 101 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHH-------
Confidence 3456666666777777777777777666532 2233444455555555556666655555555443 223333
Q ss_pred HHhcCChHHHHHHHHhcCCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCcHHHHHH
Q 007400 362 YSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKP-DKITLAVILNACTHSGLVQEGLT 440 (605)
Q Consensus 362 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~ 440 (605)
+..+...+...|++++|...+++.......| ....+..+..++...|++++|..
T Consensus 102 -------------------------~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 156 (234)
T TIGR02521 102 -------------------------LNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEK 156 (234)
T ss_pred -------------------------HHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHH
Confidence 4444444445555555555555544422111 12344444555555555555555
Q ss_pred HHHHchHhhCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 007400 441 YFESMTHDLGIIPN-QEHHACLIELLAQAGCSDQLMNQLEKMP--YEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQ 516 (605)
Q Consensus 441 ~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 516 (605)
.+++.. ...|+ ...+..+...+...|++++|...+++.. .+.+...+..++..+...|+.+.|..+.+.+...
T Consensus 157 ~~~~~~---~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 157 YLTRAL---QIDPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHH---HhCcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 555554 11222 3445555555555556555555555431 1233444444555555666666666666555444
No 75
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.26 E-value=3.5e-07 Score=87.59 Aligned_cols=448 Identities=10% Similarity=0.038 Sum_probs=261.7
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHhhhcCChhHHHHHHHHHHHhCC-CCCchhhHHHHHH
Q 007400 18 NCLIQSFLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQR-KTPTTFLSNHLIS 96 (605)
Q Consensus 18 ~~~~~~~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~l~~ 96 (605)
..++.-+..+..+|++++|+....++...+ +.+...+.+=+-++.+.+.++.|+.+.+. .+. ..... .+..-.-
T Consensus 13 ~~l~t~ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk---~~~~~~~~~-~~fEKAY 87 (652)
T KOG2376|consen 13 EALLTDLNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKK---NGALLVINS-FFFEKAY 87 (652)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHh---cchhhhcch-hhHHHHH
Confidence 456666667888999999999999999876 66777888888888899999999865432 221 11111 1112223
Q ss_pred HHHhcCChhHHHHHhccCCCCCchHHHHHHHHHHccCChHHHHHHHhhcCCCCceeHHHHHHHHHhcCChHHHHHHHHHH
Q 007400 97 MYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVL 176 (605)
Q Consensus 97 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 176 (605)
+.-+.+..++|+..++.....+..+...-...+.+.|++++|..+|+.+.+.+...+...+++-+..--.....+ .+
T Consensus 88 c~Yrlnk~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~---~~ 164 (652)
T KOG2376|consen 88 CEYRLNKLDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQ---LL 164 (652)
T ss_pred HHHHcccHHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHH---HH
Confidence 334789999999999977666766777888899999999999999999987766666665554332111111111 23
Q ss_pred HhCCCCCChhhHHHHHH---HHhccCChHHHHHHHHHHHHhCC-------------CCCh-hHHHHHHHHHHhcCChHHH
Q 007400 177 RRFSISCNEFSFAGILT---ICVKLEELKLTRQVHGQVLVTGF-------------LSNV-VISSSIVDAYAKCGELSDA 239 (605)
Q Consensus 177 ~~~~~~p~~~~~~~ll~---~~~~~~~~~~a~~~~~~~~~~~~-------------~~~~-~~~~~l~~~~~~~g~~~~a 239 (605)
......| ..+|..+.+ .+...|++.+|+++++...+.+. .... .+-..|.-++...|+.++|
T Consensus 165 q~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea 243 (652)
T KOG2376|consen 165 QSVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEA 243 (652)
T ss_pred HhccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 3333334 445555554 34578999999999988844321 0011 1223455567788999999
Q ss_pred HHHHhhcCCC---Ccch----HHHHHHHHHhcCChH-HHHHHHhhCCCC--------------ChhhH-HHHHHHHHhCC
Q 007400 240 RRLFDETDAR---DVLT----WTTMVSGYAKLGDME-SASKLFNEMPEK--------------NPVSW-TTLIAGYTRNG 296 (605)
Q Consensus 240 ~~~~~~~~~~---~~~~----~~~li~~~~~~~~~~-~A~~~~~~~~~~--------------~~~~~-~~l~~~~~~~g 296 (605)
..++..+... |... -|.++..-....-.+ .++..++..... ..+.. +.++..|. +
T Consensus 244 ~~iy~~~i~~~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~t--n 321 (652)
T KOG2376|consen 244 SSIYVDIIKRNPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFT--N 321 (652)
T ss_pred HHHHHHHHHhcCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh--h
Confidence 9999887754 2211 122222211111111 122222222111 11111 22222222 2
Q ss_pred ChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhcc--cchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHH
Q 007400 297 LGQKALELFTRMMILRIRPNQHTFSSCLCACASI--VSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQV 374 (605)
Q Consensus 297 ~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~--~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 374 (605)
.-+.+.++-.... +..|. ..+..++..+.+. .....+..++....+.....+..+.-..+......|+++.|.++
T Consensus 322 k~~q~r~~~a~lp--~~~p~-~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~i 398 (652)
T KOG2376|consen 322 KMDQVRELSASLP--GMSPE-SLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEI 398 (652)
T ss_pred hHHHHHHHHHhCC--ccCch-HHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHH
Confidence 3334433333222 12333 3344444444322 24666777777766654333455666677788888888888888
Q ss_pred HH--------hcCCC-CCcchHHHHHHHHHHcCCHHHHHHHHHHHHHCC--CCCCHH----HHHHHHHHHhccCcHHHHH
Q 007400 375 FD--------LTDNK-ENSMLWNTMISALTQHGYDEQAIRLFHDMVRSS--VKPDKI----TLAVILNACTHSGLVQEGL 439 (605)
Q Consensus 375 ~~--------~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~--~~p~~~----~~~~l~~~~~~~g~~~~a~ 439 (605)
+. .+.+- -.+.+...+...+.+.++-+.|..++.+.+..- -.+... ++.-++.--.+.|+-++|.
T Consensus 399 l~~~~~~~~ss~~~~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~ 478 (652)
T KOG2376|consen 399 LSLFLESWKSSILEAKHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEAS 478 (652)
T ss_pred HHHHhhhhhhhhhhhccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHH
Confidence 87 33321 133344555556666666666666665544210 011112 3333344445668888999
Q ss_pred HHHHHchHhhCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhCC
Q 007400 440 TYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMP 482 (605)
Q Consensus 440 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 482 (605)
..++++. + -.+++..+...++.+|++. +++.|..+-..+.
T Consensus 479 s~leel~-k-~n~~d~~~l~~lV~a~~~~-d~eka~~l~k~L~ 518 (652)
T KOG2376|consen 479 SLLEELV-K-FNPNDTDLLVQLVTAYARL-DPEKAESLSKKLP 518 (652)
T ss_pred HHHHHHH-H-hCCchHHHHHHHHHHHHhc-CHHHHHHHhhcCC
Confidence 9999888 2 2455678888888888765 5678888777765
No 76
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.26 E-value=1.7e-07 Score=85.70 Aligned_cols=264 Identities=10% Similarity=0.015 Sum_probs=195.4
Q ss_pred CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChHH-HHHHHHHHhcccchHHHHHHHHHHHHcCCCCChhHHHHH
Q 007400 280 KNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHT-FSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSL 358 (605)
Q Consensus 280 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 358 (605)
.|+.....+...+...|+.++|+..|++.+.. .|+..+ .....-.+...|+.+....+...+.... ..+...|-.-
T Consensus 230 ~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~ 306 (564)
T KOG1174|consen 230 CNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVH 306 (564)
T ss_pred ccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--ChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhh
Confidence 48888899999999999999999999998763 344322 1112223356677777777766665533 2333344444
Q ss_pred HHHHHhcCChHHHHHHHHhcCCC--CCcchHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCcH
Q 007400 359 IDMYSKCGCLNDGRQVFDLTDNK--ENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKP-DKITLAVILNACTHSGLV 435 (605)
Q Consensus 359 ~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~ 435 (605)
+......++++.|+.+-++.... .++..+-.-...+...|+.++|.-.|+..+. +.| +..+|..|+.+|...|..
T Consensus 307 ~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~--Lap~rL~~Y~GL~hsYLA~~~~ 384 (564)
T KOG1174|consen 307 AQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQM--LAPYRLEIYRGLFHSYLAQKRF 384 (564)
T ss_pred hhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHh--cchhhHHHHHHHHHHHHhhchH
Confidence 55566778899998888765432 2555666666778899999999999999888 676 567999999999999999
Q ss_pred HHHHHHHHHchHhhCCCCCHHHHHHHH-HHH-HhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHH
Q 007400 436 QEGLTYFESMTHDLGIIPNQEHHACLI-ELL-AQAGCSDQLMNQLEKM-PYEHD-SYLWNALHGVCRIHGNIDMGRKVVD 511 (605)
Q Consensus 436 ~~a~~~~~~~~~~~~~~p~~~~~~~l~-~~~-~~~g~~~~A~~~~~~~-~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~ 511 (605)
.+|...-+...+. +.-+..+.+.+. ..+ .....-++|..++++. ..+|+ ....+.++..|...|..+.++.+++
T Consensus 385 kEA~~~An~~~~~--~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe 462 (564)
T KOG1174|consen 385 KEANALANWTIRL--FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLE 462 (564)
T ss_pred HHHHHHHHHHHHH--hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHH
Confidence 9998877766622 233344444442 222 2233457899999885 45666 5567788899999999999999999
Q ss_pred HHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 007400 512 QLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQ 551 (605)
Q Consensus 512 ~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 551 (605)
+.+...| |......|++++...+.+.+|.+.|....+.+
T Consensus 463 ~~L~~~~-D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~d 501 (564)
T KOG1174|consen 463 KHLIIFP-DVNLHNHLGDIMRAQNEPQKAMEYYYKALRQD 501 (564)
T ss_pred HHHhhcc-ccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 9999999 78899999999999999999999999887643
No 77
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.25 E-value=6.6e-10 Score=104.22 Aligned_cols=188 Identities=17% Similarity=0.086 Sum_probs=83.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhcCC--CCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhc
Q 007400 355 MSSLIDMYSKCGCLNDGRQVFDLTDN--KENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPD-KITLAVILNACTH 431 (605)
Q Consensus 355 ~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~ 431 (605)
|..+...|...|+.+.|...|+.... +.+...|+.+...+...|++++|...|++.++ +.|+ ..++..+..++..
T Consensus 67 ~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~--l~P~~~~a~~~lg~~l~~ 144 (296)
T PRK11189 67 HYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLE--LDPTYNYAYLNRGIALYY 144 (296)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHH
Confidence 44444445555555555555543321 11344555555555555555555555555555 3443 3345555555555
Q ss_pred cCcHHHHHHHHHHchHhhCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 007400 432 SGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVD 511 (605)
Q Consensus 432 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 511 (605)
.|++++|.+.+++.. ...|+..........+...+++++|.+.+++.....+...|. ........|+...+ ..++
T Consensus 145 ~g~~~eA~~~~~~al---~~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~~~~~~~-~~~~~~~lg~~~~~-~~~~ 219 (296)
T PRK11189 145 GGRYELAQDDLLAFY---QDDPNDPYRALWLYLAESKLDPKQAKENLKQRYEKLDKEQWG-WNIVEFYLGKISEE-TLME 219 (296)
T ss_pred CCCHHHHHHHHHHHH---HhCCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCccccH-HHHHHHHccCCCHH-HHHH
Confidence 555555555555555 223332211111112233445555555554321010111111 11111222332222 1222
Q ss_pred HHH-------hcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 007400 512 QLI-------DQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINE 549 (605)
Q Consensus 512 ~~~-------~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 549 (605)
.+. ++.|....+|..++.++.+.|++++|+..|++..+
T Consensus 220 ~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~ 264 (296)
T PRK11189 220 RLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALA 264 (296)
T ss_pred HHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 222 22344445556666666666666666666665554
No 78
>PF13041 PPR_2: PPR repeat family
Probab=99.24 E-value=2e-11 Score=79.59 Aligned_cols=50 Identities=34% Similarity=0.636 Sum_probs=44.3
Q ss_pred CCceeHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHhc
Q 007400 148 RDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVK 197 (605)
Q Consensus 148 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 197 (605)
||+.+||++|.+|++.|++++|.++|++|.+.|+.||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 68888999999999999999999999999999999999999999988864
No 79
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.23 E-value=4.5e-06 Score=84.94 Aligned_cols=502 Identities=12% Similarity=0.120 Sum_probs=284.8
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHhhhcCChhHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcC
Q 007400 23 SFLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCG 102 (605)
Q Consensus 23 ~~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 102 (605)
+...+.+.|++++++-+. .+-|.+|+ |..+++...+ -+++.+.++...+....+ +.. -.+.+...+...+
T Consensus 487 Vi~cfAE~Gqf~KiilY~---kKvGyTPd---ymflLq~l~r-~sPD~~~qFa~~l~Q~~~--~~~-die~I~DlFme~N 556 (1666)
T KOG0985|consen 487 VIQCFAETGQFKKIILYA---KKVGYTPD---YMFLLQQLKR-SSPDQALQFAMMLVQDEE--PLA-DIEQIVDLFMELN 556 (1666)
T ss_pred HHHHHHHhcchhHHHHHH---HHcCCCcc---HHHHHHHHHc-cChhHHHHHHHHhhccCC--Ccc-cHHHHHHHHHHHH
Confidence 334555666666665543 34566676 5566666654 467778887776665443 222 3556666666655
Q ss_pred ChhHHHHHhccCCCC---------------------------------CchHHHHHHHHHHccCChHHHHHHHhhcCC--
Q 007400 103 SDVDARKVFDKIPVK---------------------------------NLFSYNNMLSGYANLGMMKHARNLFDNMAE-- 147 (605)
Q Consensus 103 ~~~~a~~~~~~~~~~---------------------------------~~~~~~~li~~~~~~~~~~~A~~~~~~~~~-- 147 (605)
....+...+-.+.+. +..-+..+.+.|.+.|-...|++.+..+..
T Consensus 557 ~iQq~TSFLLdaLK~~~Pd~g~LQTrLLE~NL~~aPqVADAILgN~mFtHyDra~IAqLCEKAGL~qraLehytDl~DIK 636 (1666)
T KOG0985|consen 557 LIQQCTSFLLDALKLNSPDEGHLQTRLLEMNLVHAPQVADAILGNDMFTHYDRAEIAQLCEKAGLLQRALEHYTDLYDIK 636 (1666)
T ss_pred hhhhhHHHHHHHhcCCChhhhhHHHHHHHHHhccchHHHHHHHhccccccccHHHHHHHHHhcchHHHHHHhcccHHHHH
Confidence 555555544333221 112366677788888888888887776642
Q ss_pred C-----CceeHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHh--------
Q 007400 148 R-----DVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVT-------- 214 (605)
Q Consensus 148 ~-----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-------- 214 (605)
+ +...=..++ .|.-.-.++.+.+.++.|...++..|..+...+..-|...=..+...++|+...+.
T Consensus 637 R~vVhth~L~pEwLv-~yFg~lsve~s~eclkaml~~NirqNlQi~VQvatky~eqlg~~~li~lFE~fks~eGL~yfLg 715 (1666)
T KOG0985|consen 637 RVVVHTHLLNPEWLV-NYFGSLSVEDSLECLKAMLSANIRQNLQIVVQVATKYHEQLGAQALIELFESFKSYEGLYYFLG 715 (1666)
T ss_pred HHHHHhccCCHHHHH-HHHHhcCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCHHHHHHHHHhhccchhHHHHHH
Confidence 1 111111222 23334467888888888888787777777666666555554455555555554331
Q ss_pred ---CCCCChhHHHHHHHHHHhcCChHHHHHHHhhcCCC------------------------CcchHHHHHHHHHhcCCh
Q 007400 215 ---GFLSNVVISSSIVDAYAKCGELSDARRLFDETDAR------------------------DVLTWTTMVSGYAKLGDM 267 (605)
Q Consensus 215 ---~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------------------------~~~~~~~li~~~~~~~~~ 267 (605)
.+..|..+.-.-+.+.++.|++.+.+++.++-.-- |..-+-.=+..|.-.++.
T Consensus 716 Sivn~seDpevh~KYIqAA~kt~QikEvERicresn~YdpErvKNfLkeAkL~DqlPLiiVCDRf~fVhdlvlYLyrnn~ 795 (1666)
T KOG0985|consen 716 SIVNFSEDPEVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEAKLTDQLPLIIVCDRFDFVHDLVLYLYRNNL 795 (1666)
T ss_pred HHhccccCchHHHHHHHHHHhhccHHHHHHHHhccccCCHHHHHHHHHhccccccCceEEEecccccHHHHHHHHHHhhH
Confidence 23456666667788888888888888877654321 211222222223333333
Q ss_pred HHHHHHHhhCCCC-----------C----h-------------hhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChHH
Q 007400 268 ESASKLFNEMPEK-----------N----P-------------VSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHT 319 (605)
Q Consensus 268 ~~A~~~~~~~~~~-----------~----~-------------~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~ 319 (605)
.+=++++-.-..| | . ..-.-|+.-.-+.++..--+.+++.....| .-|..|
T Consensus 796 ~kyIE~yVQkvNps~~p~VvG~LLD~dC~E~~ik~Li~~v~gq~~~deLv~EvEkRNRLklLlp~LE~~i~eG-~~d~a~ 874 (1666)
T KOG0985|consen 796 QKYIEIYVQKVNPSRTPQVVGALLDVDCSEDFIKNLILSVRGQFPVDELVEEVEKRNRLKLLLPWLESLIQEG-SQDPAT 874 (1666)
T ss_pred HHHHHHHHhhcCCcccchhhhhhhcCCCcHHHHHHHHHHHhccCChHHHHHHHHhhhhHHHHHHHHHHHHhcc-CcchHH
Confidence 3333333322211 0 0 112223334445566666677777777777 467888
Q ss_pred HHHHHHHHhcccchHHHH---------HHHHH-HHHc-----------C--------CCCChhHHHHHHHHHHhcCChHH
Q 007400 320 FSSCLCACASIVSLKHGK---------QVHGF-LIRT-----------N--------FRSNTIVMSSLIDMYSKCGCLND 370 (605)
Q Consensus 320 ~~~ll~~~~~~~~~~~a~---------~~~~~-~~~~-----------~--------~~~~~~~~~~l~~~~~~~g~~~~ 370 (605)
++++...|...++-.+-. .+..+ ..++ | +......|....+.+.+..+.+-
T Consensus 875 hnAlaKIyIDSNNnPE~fLkeN~yYDs~vVGkYCEKRDP~lA~vaYerGqcD~elI~vcNeNSlfK~~aRYlv~R~D~~L 954 (1666)
T KOG0985|consen 875 HNALAKIYIDSNNNPERFLKENPYYDSKVVGKYCEKRDPHLACVAYERGQCDLELINVCNENSLFKSQARYLVERSDPDL 954 (1666)
T ss_pred HhhhhheeecCCCChHHhcccCCcchhhHHhhhhcccCCceEEEeecccCCcHHHHHhcCchhHHHHHHHHHHhccChHH
Confidence 888888887655433211 01111 1111 1 01122334445555555555554
Q ss_pred HHHHHHh----------------cCCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHhc-
Q 007400 371 GRQVFDL----------------TDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKP--DKITLAVILNACTH- 431 (605)
Q Consensus 371 A~~~~~~----------------~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p--~~~~~~~l~~~~~~- 431 (605)
-.+++.+ +++..|+.....-..++...+-+.+-++++++.+-.+-.. +...-+.|+-...+
T Consensus 955 W~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAika 1034 (1666)
T KOG0985|consen 955 WAKVLNEENPYRRQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKA 1034 (1666)
T ss_pred HHHHHhccChHHHHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhc
Confidence 4444421 2222366666777788888888888888888877432111 11122222222222
Q ss_pred --------------------------cCcHHHHHHHHHHchHhhCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhCCCCC
Q 007400 432 --------------------------SGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEH 485 (605)
Q Consensus 432 --------------------------~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 485 (605)
.+-+++|..+|++.. .+......|+ ..-+..++|.++-+++.
T Consensus 1035 d~trVm~YI~rLdnyDa~~ia~iai~~~LyEEAF~ifkkf~------~n~~A~~VLi---e~i~~ldRA~efAe~~n--- 1102 (1666)
T KOG0985|consen 1035 DRTRVMEYINRLDNYDAPDIAEIAIENQLYEEAFAIFKKFD------MNVSAIQVLI---ENIGSLDRAYEFAERCN--- 1102 (1666)
T ss_pred ChHHHHHHHHHhccCCchhHHHHHhhhhHHHHHHHHHHHhc------ccHHHHHHHH---HHhhhHHHHHHHHHhhC---
Confidence 233344444443321 1222222222 23455566666655554
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCCCc
Q 007400 486 DSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFK 553 (605)
Q Consensus 486 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 553 (605)
.+.+|..++.+..+.|...+|.+-|-++ +|+..|....++..+.|+|++-.+++...++..-+
T Consensus 1103 ~p~vWsqlakAQL~~~~v~dAieSyika-----dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E 1165 (1666)
T KOG0985|consen 1103 EPAVWSQLAKAQLQGGLVKDAIESYIKA-----DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVRE 1165 (1666)
T ss_pred ChHHHHHHHHHHHhcCchHHHHHHHHhc-----CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcC
Confidence 5678999999999999999998877653 57889999999999999999999999888766443
No 80
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.22 E-value=5.3e-09 Score=98.15 Aligned_cols=228 Identities=11% Similarity=-0.002 Sum_probs=150.1
Q ss_pred CChHHHHHHHHHHHHCC-CCCC--hHHHHHHHHHHhcccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHH
Q 007400 296 GLGQKALELFTRMMILR-IRPN--QHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGR 372 (605)
Q Consensus 296 g~~~~a~~~~~~m~~~g-~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 372 (605)
+..+.++.-+.+++... ..|+ ...|..+...+...|+.+.|...|.++.+.. +.+...|+.+...+...|++++|.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 45566666666666432 1222 2345566667777788888888888887765 556778888888888889999998
Q ss_pred HHHHhcCC-CC-CcchHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHchHhhC
Q 007400 373 QVFDLTDN-KE-NSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLG 450 (605)
Q Consensus 373 ~~~~~~~~-~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 450 (605)
..|+.... .| +..+|..+...+...|++++|++.+++..+ ..|+..........+...++.++|...+.+.. . .
T Consensus 119 ~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~--~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~-~-~ 194 (296)
T PRK11189 119 EAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQ--DDPNDPYRALWLYLAESKLDPKQAKENLKQRY-E-K 194 (296)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHccCCHHHHHHHHHHHH-h-h
Confidence 88887543 22 566788888888899999999999999988 45654422222333455678999999997655 2 2
Q ss_pred CCCCHHHHHHHHHHHHhcCChHH--HHHHHHhC-CC-----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-C
Q 007400 451 IIPNQEHHACLIELLAQAGCSDQ--LMNQLEKM-PY-----EHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQS-S 521 (605)
Q Consensus 451 ~~p~~~~~~~l~~~~~~~g~~~~--A~~~~~~~-~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~-~ 521 (605)
..|+... ..+. ....|+... +.+.+.+. .. +....+|..++..+...|++++|+..|+++++.+|.+ .
T Consensus 195 ~~~~~~~-~~~~--~~~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~ 271 (296)
T PRK11189 195 LDKEQWG-WNIV--EFYLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNFV 271 (296)
T ss_pred CCccccH-HHHH--HHHccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchHH
Confidence 2333222 2222 333454433 33333321 11 1234678899999999999999999999999998743 3
Q ss_pred chHHHHHHHH
Q 007400 522 ATHGLLSSIY 531 (605)
Q Consensus 522 ~~~~~l~~~~ 531 (605)
.....+....
T Consensus 272 e~~~~~~e~~ 281 (296)
T PRK11189 272 EHRYALLELA 281 (296)
T ss_pred HHHHHHHHHH
Confidence 3333344433
No 81
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.22 E-value=3.2e-07 Score=89.86 Aligned_cols=373 Identities=11% Similarity=0.105 Sum_probs=220.4
Q ss_pred HHccCChHHHHHHHhhcCCCCceeHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCChHHHHHHH
Q 007400 129 YANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVH 208 (605)
Q Consensus 129 ~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 208 (605)
+...|.++.|..-|-+.. ..-..+.+....++|.+|+.+++.+.... .-..-|..+...|+..|+++.|+++|
T Consensus 716 l~~~~q~daainhfiea~-----~~~kaieaai~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf 788 (1636)
T KOG3616|consen 716 LEQIGQLDAAINHFIEAN-----CLIKAIEAAIGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELF 788 (1636)
T ss_pred HHHHHhHHHHHHHHHHhh-----hHHHHHHHHhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHH
Confidence 334445555544443321 12233556667788999999998887633 33445777888899999999999988
Q ss_pred HHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhcCCC--CcchHHHHHHHHHhcCChHHHHHHHhhCCCCChhhHH
Q 007400 209 GQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDAR--DVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWT 286 (605)
Q Consensus 209 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 286 (605)
.+. ..++-.+.+|.+.|+++.|.++-++...+ ....|-+-..-+-..|++.+|++++-.+..|+.
T Consensus 789 ~e~---------~~~~dai~my~k~~kw~da~kla~e~~~~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~---- 855 (1636)
T KOG3616|consen 789 TEA---------DLFKDAIDMYGKAGKWEDAFKLAEECHGPEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDK---- 855 (1636)
T ss_pred Hhc---------chhHHHHHHHhccccHHHHHHHHHHhcCchhHHHHHHHhHHhHHhhcchhhhhheeEEccCchH----
Confidence 543 34566788999999999999999988877 345566666778889999999999999888864
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhcccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcC
Q 007400 287 TLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCG 366 (605)
Q Consensus 287 ~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 366 (605)
.|+.|-+.|..+..+++..+-... .-..|...+..-+...|++..|+..|-+.-+ |.+-+++|...+
T Consensus 856 -aiqmydk~~~~ddmirlv~k~h~d---~l~dt~~~f~~e~e~~g~lkaae~~flea~d---------~kaavnmyk~s~ 922 (1636)
T KOG3616|consen 856 -AIQMYDKHGLDDDMIRLVEKHHGD---HLHDTHKHFAKELEAEGDLKAAEEHFLEAGD---------FKAAVNMYKASE 922 (1636)
T ss_pred -HHHHHHhhCcchHHHHHHHHhChh---hhhHHHHHHHHHHHhccChhHHHHHHHhhhh---------HHHHHHHhhhhh
Confidence 467888999999988887764321 1224555667777788888888877655433 456677788888
Q ss_pred ChHHHHHHHHhcCCCCCc-----chHH-------------------HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 007400 367 CLNDGRQVFDLTDNKENS-----MLWN-------------------TMISALTQHGYDEQAIRLFHDMVRSSVKPDKITL 422 (605)
Q Consensus 367 ~~~~A~~~~~~~~~~~~~-----~~~~-------------------~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~ 422 (605)
-+++|.++-+.-... |. ..|. .-+...+.++-++-|.++-+-..+.. .|. ..
T Consensus 923 lw~dayriaktegg~-n~~k~v~flwaksiggdaavkllnk~gll~~~id~a~d~~afd~afdlari~~k~k-~~~--vh 998 (1636)
T KOG3616|consen 923 LWEDAYRIAKTEGGA-NAEKHVAFLWAKSIGGDAAVKLLNKHGLLEAAIDFAADNCAFDFAFDLARIAAKDK-MGE--VH 998 (1636)
T ss_pred hHHHHHHHHhccccc-cHHHHHHHHHHHhhCcHHHHHHHHhhhhHHHHhhhhhcccchhhHHHHHHHhhhcc-Ccc--ch
Confidence 888888777643321 11 1111 11122233444444444443333221 121 22
Q ss_pred HHHHHHHhccCcHHHHHHHHHHchHhhCC-------CCCHHHH---------HHHHHHHHhcCChHHHHHHHHhCCCCCC
Q 007400 423 AVILNACTHSGLVQEGLTYFESMTHDLGI-------IPNQEHH---------ACLIELLAQAGCSDQLMNQLEKMPYEHD 486 (605)
Q Consensus 423 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-------~p~~~~~---------~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 486 (605)
..+..-+...|++++|...|-+.++-.-. .|+..-. ..-+..+.+..++..|.++-+.-....-
T Consensus 999 lk~a~~ledegk~edaskhyveaiklntynitwcqavpsrfd~e~ir~gnkpe~av~mfi~dndwa~aervae~h~~~~l 1078 (1636)
T KOG3616|consen 999 LKLAMFLEDEGKFEDASKHYVEAIKLNTYNITWCQAVPSRFDAEFIRAGNKPEEAVEMFIHDNDWAAAERVAEAHCEDLL 1078 (1636)
T ss_pred hHHhhhhhhccchhhhhHhhHHHhhcccccchhhhcccchhhHHHHHcCCChHHHHHHhhhcccHHHHHHHHHhhChhhh
Confidence 23333456778888887777666521100 0110000 0011223333444444444333220111
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHH
Q 007400 487 SYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQL 546 (605)
Q Consensus 487 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 546 (605)
+.++..-+......|++-+|..++-++ ..|+ ....-|...+.|.+|+++.+.
T Consensus 1079 ~dv~tgqar~aiee~d~~kae~fllra--nkp~------i~l~yf~e~~lw~dalri~kd 1130 (1636)
T KOG3616|consen 1079 ADVLTGQARGAIEEGDFLKAEGFLLRA--NKPD------IALNYFIEAELWPDALRIAKD 1130 (1636)
T ss_pred HHHHhhhhhccccccchhhhhhheeec--CCCc------hHHHHHHHhccChHHHHHHHh
Confidence 223333344445567777777665432 2342 233445667788887776553
No 82
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.20 E-value=5.8e-07 Score=88.08 Aligned_cols=201 Identities=13% Similarity=0.089 Sum_probs=92.0
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCChhh-HHHHHH-------------HhhhcCChhHHHHHHHHHH-------HhCCC
Q 007400 26 SLISKGQLSEAISSLDLLAQRGIRLPAET-LAFILQ-------------QCAESKSLKLGKRVHLHLK-------LTQRK 84 (605)
Q Consensus 26 ~~~~~g~~~~a~~~~~~~~~~g~~~~~~~-~~~ll~-------------~~~~~~~~~~a~~~~~~~~-------~~~~~ 84 (605)
+.+..|++.+|..+++.... .|+..+ |..+.. ++..-|+..+++.+.+.+. +.|..
T Consensus 453 aaid~~df~ra~afles~~~---~~da~amw~~laelale~~nl~iaercfaai~dvak~r~lhd~~eiadeas~~~ggd 529 (1636)
T KOG3616|consen 453 AAIDDGDFDRATAFLESLEM---GPDAEAMWIRLAELALEAGNLFIAERCFAAIGDVAKARFLHDILEIADEASIEIGGD 529 (1636)
T ss_pred cccccCchHHHHHHHHhhcc---CccHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhCCC
Confidence 34567888888888776542 244433 333322 2333444444444433221 22322
Q ss_pred CCchhhHHHHHHHHHhcCChhHHHHHhccCCCCCchHHHHHHHHHHccCChHHHHHHHhhcCCCCce-eHHHHHHHHHhc
Q 007400 85 TPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVV-SWNTMIIGYAKS 163 (605)
Q Consensus 85 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~li~~~~~~ 163 (605)
... .|..-.....-..++.+|..+|-+-. .-...|..|....++++|+.+-+....|-.. .-.+.++++...
T Consensus 530 gt~--fykvra~lail~kkfk~ae~ifleqn-----~te~aigmy~~lhkwde~i~lae~~~~p~~eklk~sy~q~l~dt 602 (1636)
T KOG3616|consen 530 GTD--FYKVRAMLAILEKKFKEAEMIFLEQN-----ATEEAIGMYQELHKWDEAIALAEAKGHPALEKLKRSYLQALMDT 602 (1636)
T ss_pred Cch--HHHHHHHHHHHHhhhhHHHHHHHhcc-----cHHHHHHHHHHHHhHHHHHHHHHhcCChHHHHHHHHHHHHHHhc
Confidence 222 23322222222345556655543321 1223455666666777777666655444221 112334444555
Q ss_pred CChHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHH
Q 007400 164 GAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLF 243 (605)
Q Consensus 164 ~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 243 (605)
|+-++|-++-. +..--.+.|..|.+.|.+..|......- ..+..|......+..++.+..-+++|-.+|
T Consensus 603 ~qd~ka~elk~---------sdgd~laaiqlyika~~p~~a~~~a~n~--~~l~~de~il~~ia~alik~elydkagdlf 671 (1636)
T KOG3616|consen 603 GQDEKAAELKE---------SDGDGLAAIQLYIKAGKPAKAARAALND--EELLADEEILEHIAAALIKGELYDKAGDLF 671 (1636)
T ss_pred Cchhhhhhhcc---------ccCccHHHHHHHHHcCCchHHHHhhcCH--HHhhccHHHHHHHHHHHHhhHHHHhhhhHH
Confidence 55555543311 1111223456666666665555432111 112234444444555555555555555555
Q ss_pred hhcC
Q 007400 244 DETD 247 (605)
Q Consensus 244 ~~~~ 247 (605)
+++.
T Consensus 672 eki~ 675 (1636)
T KOG3616|consen 672 EKIH 675 (1636)
T ss_pred HHhh
Confidence 5544
No 83
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.20 E-value=6.3e-08 Score=86.18 Aligned_cols=297 Identities=12% Similarity=0.098 Sum_probs=174.8
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHhhcCCCCcchHHHHH---HHHHhcCChHHHHHHHhhCCCCChhhHHHH---HHHHH
Q 007400 220 VVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMV---SGYAKLGDMESASKLFNEMPEKNPVSWTTL---IAGYT 293 (605)
Q Consensus 220 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li---~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l---~~~~~ 293 (605)
+.-...+...+...|++..|+.-|....+.|+..|.++. ..|...|+...|+.-+.++.+..+..+.+- ...+.
T Consensus 38 vekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vll 117 (504)
T KOG0624|consen 38 VEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLL 117 (504)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhh
Confidence 333444566666777778888777777777776666654 346677777777777777665333333332 34567
Q ss_pred hCCChHHHHHHHHHHHHCCCCCChHH----------------HHHHHHHHhcccchHHHHHHHHHHHHcCCCCChhHHHH
Q 007400 294 RNGLGQKALELFTRMMILRIRPNQHT----------------FSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSS 357 (605)
Q Consensus 294 ~~g~~~~a~~~~~~m~~~g~~p~~~~----------------~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 357 (605)
++|.+++|..-|+.+++.. |+..+ ....+..+...|+...+......+++.. +-+...+..
T Consensus 118 K~Gele~A~~DF~~vl~~~--~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~ 194 (504)
T KOG0624|consen 118 KQGELEQAEADFDQVLQHE--PSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQA 194 (504)
T ss_pred hcccHHHHHHHHHHHHhcC--CCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHHHH
Confidence 7888888888888877653 22111 1122334455677777777777777765 556677777
Q ss_pred HHHHHHhcCChHHHHHHHHhcCC--CCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH-HHH---HH------
Q 007400 358 LIDMYSKCGCLNDGRQVFDLTDN--KENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKI-TLA---VI------ 425 (605)
Q Consensus 358 l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~-~~~---~l------ 425 (605)
-..+|...|++..|+.-+..... ..+..++.-+-..+...|+.+.++...++.++ +.||.. +|. .|
T Consensus 195 Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK--ldpdHK~Cf~~YKklkKv~K~ 272 (504)
T KOG0624|consen 195 RAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLK--LDPDHKLCFPFYKKLKKVVKS 272 (504)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc--cCcchhhHHHHHHHHHHHHHH
Confidence 77777777777777766654332 12555666666667777777777777777777 566653 111 11
Q ss_pred ---HHHHhccCcHHHHHHHHHHchHhhCCCCC-----HHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHH
Q 007400 426 ---LNACTHSGLVQEGLTYFESMTHDLGIIPN-----QEHHACLIELLAQAGCSDQLMNQLEKM-PYEH-DSYLWNALHG 495 (605)
Q Consensus 426 ---~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~ 495 (605)
+......++|.+++.-.+... ...|. ...+..+..++...|++.+|++...+. ...| |+.++-.-+.
T Consensus 273 les~e~~ie~~~~t~cle~ge~vl---k~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAe 349 (504)
T KOG0624|consen 273 LESAEQAIEEKHWTECLEAGEKVL---KNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAE 349 (504)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHH---hcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHH
Confidence 011223445555555555554 12222 223444555555666666666665553 2223 3555555566
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCCchH
Q 007400 496 VCRIHGNIDMGRKVVDQLIDQNPQSSATH 524 (605)
Q Consensus 496 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 524 (605)
+|..-..++.|+.-|+++.+.+|+|..+-
T Consensus 350 A~l~dE~YD~AI~dye~A~e~n~sn~~~r 378 (504)
T KOG0624|consen 350 AYLGDEMYDDAIHDYEKALELNESNTRAR 378 (504)
T ss_pred HHhhhHHHHHHHHHHHHHHhcCcccHHHH
Confidence 66666666666666666666666554433
No 84
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.20 E-value=3.8e-07 Score=90.62 Aligned_cols=282 Identities=11% Similarity=0.021 Sum_probs=190.9
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHhhhcCChhHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcC--
Q 007400 25 LSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCG-- 102 (605)
Q Consensus 25 ~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-- 102 (605)
..+...|++++|++.++.-... +......+......+.+.|+.++|..+|..++..+|.... -|..+..+..-..
T Consensus 12 ~il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~--Yy~~L~~~~g~~~~~ 88 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYD--YYRGLEEALGLQLQL 88 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHH--HHHHHHHHHhhhccc
Confidence 3567889999999999886543 4455566777788899999999999999999999864433 4667777663332
Q ss_pred ---ChhHHHHHhccCCC--CCchHHHHHHHHHHccCChH-HHHHHHhhcCCCCc-eeHHHHHHHHHhcCChHHHHHHHHH
Q 007400 103 ---SDVDARKVFDKIPV--KNLFSYNNMLSGYANLGMMK-HARNLFDNMAERDV-VSWNTMIIGYAKSGAVEEGLKFYKV 175 (605)
Q Consensus 103 ---~~~~a~~~~~~~~~--~~~~~~~~li~~~~~~~~~~-~A~~~~~~~~~~~~-~~~~~li~~~~~~~~~~~a~~~~~~ 175 (605)
+.+....+++++.. |...+...+.-.+.....+. .+...+..+.++.+ .+|+.|-..|.......-..+++..
T Consensus 89 ~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~~~ 168 (517)
T PF12569_consen 89 SDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESLVEE 168 (517)
T ss_pred ccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHHHHH
Confidence 45666777777753 22222212211122212222 23333344444444 4455555555545555555566665
Q ss_pred HHhC----C----------CCCCh--hhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHH
Q 007400 176 LRRF----S----------ISCNE--FSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDA 239 (605)
Q Consensus 176 m~~~----~----------~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 239 (605)
.... + -.|+. .++..+...+...|+++.|..+++..++..+. .+..|..-.+.+-+.|++.+|
T Consensus 169 ~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt-~~ely~~KarilKh~G~~~~A 247 (517)
T PF12569_consen 169 YVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPT-LVELYMTKARILKHAGDLKEA 247 (517)
T ss_pred HHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHCCCHHHH
Confidence 5431 1 12333 24455667788999999999999999887532 477888889999999999999
Q ss_pred HHHHhhcCCC---CcchHHHHHHHHHhcCChHHHHHHHhhCCCCChh----------h--HHHHHHHHHhCCChHHHHHH
Q 007400 240 RRLFDETDAR---DVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPV----------S--WTTLIAGYTRNGLGQKALEL 304 (605)
Q Consensus 240 ~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~----------~--~~~l~~~~~~~g~~~~a~~~ 304 (605)
.+.++....- |...-+..+..+.+.|+.++|.+++.....++.. . ......+|.+.|++..|+..
T Consensus 248 a~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~ 327 (517)
T PF12569_consen 248 AEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKR 327 (517)
T ss_pred HHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 9999887764 5667777888899999999999999888765411 1 24456788999999999888
Q ss_pred HHHHHH
Q 007400 305 FTRMMI 310 (605)
Q Consensus 305 ~~~m~~ 310 (605)
|..+.+
T Consensus 328 ~~~v~k 333 (517)
T PF12569_consen 328 FHAVLK 333 (517)
T ss_pred HHHHHH
Confidence 877654
No 85
>PF13041 PPR_2: PPR repeat family
Probab=99.19 E-value=7.3e-11 Score=76.95 Aligned_cols=50 Identities=30% Similarity=0.573 Sum_probs=47.0
Q ss_pred CCcchHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 007400 382 ENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTH 431 (605)
Q Consensus 382 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 431 (605)
||+.+||++|.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 68999999999999999999999999999999999999999999999874
No 86
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.17 E-value=3.6e-07 Score=86.72 Aligned_cols=235 Identities=9% Similarity=0.019 Sum_probs=113.9
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhcccchHHHHHHHHHHHHcCCCCChhHHHH-------
Q 007400 285 WTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSS------- 357 (605)
Q Consensus 285 ~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~------- 357 (605)
...+.++..+..++..|++-+....... -+..-++....++...|.+......-....+.|- ....-|+.
T Consensus 227 ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gr-e~rad~klIak~~~r 303 (539)
T KOG0548|consen 227 EKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGR-ELRADYKLIAKALAR 303 (539)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhH-HHHHHHHHHHHHHHH
Confidence 3445556666666666666666666542 3333334444555555555555554444444331 11111111
Q ss_pred HHHHHHhcCChHHHHHHHHhcCCC-CCcchHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCcH
Q 007400 358 LIDMYSKCGCLNDGRQVFDLTDNK-ENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKI-TLAVILNACTHSGLV 435 (605)
Q Consensus 358 l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~-~~~~l~~~~~~~g~~ 435 (605)
+..+|.+.++++.++..|.+.... .++ ....+....+++....+...- +.|... -...-...+.+.|++
T Consensus 304 ~g~a~~k~~~~~~ai~~~~kaLte~Rt~-------~~ls~lk~~Ek~~k~~e~~a~--~~pe~A~e~r~kGne~Fk~gdy 374 (539)
T KOG0548|consen 304 LGNAYTKREDYEGAIKYYQKALTEHRTP-------DLLSKLKEAEKALKEAERKAY--INPEKAEEEREKGNEAFKKGDY 374 (539)
T ss_pred hhhhhhhHHhHHHHHHHHHHHhhhhcCH-------HHHHHHHHHHHHHHHHHHHHh--hChhHHHHHHHHHHHHHhccCH
Confidence 222444445555555555543211 010 111222333444443333333 233221 122224445566666
Q ss_pred HHHHHHHHHchHhhCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHhCC-C-CCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 007400 436 QEGLTYFESMTHDLGIIPN-QEHHACLIELLAQAGCSDQLMNQLEKMP-Y-EHDSYLWNALHGVCRIHGNIDMGRKVVDQ 512 (605)
Q Consensus 436 ~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 512 (605)
..|+..|.++++ ..|+ ...|....-+|.+.|.+..|+.-.+... . ++....|..-+.++....+++.|.+.|++
T Consensus 375 ~~Av~~YteAIk---r~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~e 451 (539)
T KOG0548|consen 375 PEAVKHYTEAIK---RDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQE 451 (539)
T ss_pred HHHHHHHHHHHh---cCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666662 2243 5566666666666666666665555432 1 22233444444455555566666666666
Q ss_pred HHhcCCCCCchHHHHHHHHHhc
Q 007400 513 LIDQNPQSSATHGLLSSIYSAL 534 (605)
Q Consensus 513 ~~~~~p~~~~~~~~l~~~~~~~ 534 (605)
+++.+|.+......+.++....
T Consensus 452 ale~dp~~~e~~~~~~rc~~a~ 473 (539)
T KOG0548|consen 452 ALELDPSNAEAIDGYRRCVEAQ 473 (539)
T ss_pred HHhcCchhHHHHHHHHHHHHHh
Confidence 6666666665555555555443
No 87
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.16 E-value=1.7e-07 Score=81.92 Aligned_cols=407 Identities=11% Similarity=0.051 Sum_probs=214.2
Q ss_pred HHHHHHHHHccCChHHHHHHHhhcCCC---CceeHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHH-HHHHhc
Q 007400 122 YNNMLSGYANLGMMKHARNLFDNMAER---DVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGI-LTICVK 197 (605)
Q Consensus 122 ~~~li~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l-l~~~~~ 197 (605)
+.+.+..+.+..++++|++++..-.++ +....+.|..+|....++..|.+.|+++-. ..|...-|... ...+.+
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~q--l~P~~~qYrlY~AQSLY~ 90 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQ--LHPELEQYRLYQAQSLYK 90 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hChHHHHHHHHHHHHHHH
Confidence 556666677777888888877766543 344566667777777788888888887766 44555555332 334556
Q ss_pred cCChHHHHHHHHHHHHhCCCCChh--HHHHHHHHHHhcCChHHHHHHHhhcCC-CCcchHHHHHHHHHhcCChHHHHHHH
Q 007400 198 LEELKLTRQVHGQVLVTGFLSNVV--ISSSIVDAYAKCGELSDARRLFDETDA-RDVLTWTTMVSGYAKLGDMESASKLF 274 (605)
Q Consensus 198 ~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~A~~~~ 274 (605)
.+.+..|..+...|... ++.. +...-.......+++..+..++++... .+..+.+...-...+.|+++.|.+-|
T Consensus 91 A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkF 167 (459)
T KOG4340|consen 91 ACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKF 167 (459)
T ss_pred hcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHH
Confidence 66677777776666432 1111 111111122334555566655555553 33333333333444455555555555
Q ss_pred hhCCCC----ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChHHH-HHHHHHHhcccchHHHHHHHHHHHHcCCC
Q 007400 275 NEMPEK----NPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTF-SSCLCACASIVSLKHGKQVHGFLIRTNFR 349 (605)
Q Consensus 275 ~~~~~~----~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~-~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 349 (605)
+...+- ....||..+ +..+.|+++.|++...++...|++..+..- .....+- ....+.....+. .+
T Consensus 168 qaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegi-DvrsvgNt~~lh----~S--- 238 (459)
T KOG4340|consen 168 QAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGI-DVRSVGNTLVLH----QS--- 238 (459)
T ss_pred HHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccC-chhcccchHHHH----HH---
Confidence 544331 222333322 233445555555555555555443221100 0000000 000000000000 00
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHHhcCCC----CCcchHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHH
Q 007400 350 SNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNK----ENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKP-DKITLAV 424 (605)
Q Consensus 350 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~ 424 (605)
.-+..+|.-...+.+.|+++.|.+.+-.|+.+ .|++|...+.-.= ..+++....+-+.-++.. .| ...||..
T Consensus 239 al~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~--nPfP~ETFAN 315 (459)
T KOG4340|consen 239 ALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQ--NPFPPETFAN 315 (459)
T ss_pred HHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhc--CCCChHHHHH
Confidence 00122344445567889999999999999865 4677766654322 245555556666666664 44 4569999
Q ss_pred HHHHHhccCcHHHHHHHHHHchHhhCCC-CCHHHHHHHHHHHH-hcCChHHHHHHHHhCCCCCCHHHHHHHHHHH-HhcC
Q 007400 425 ILNACTHSGLVQEGLTYFESMTHDLGII-PNQEHHACLIELLA-QAGCSDQLMNQLEKMPYEHDSYLWNALHGVC-RIHG 501 (605)
Q Consensus 425 l~~~~~~~g~~~~a~~~~~~~~~~~~~~-p~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~-~~~g 501 (605)
++-.|++..-++.|-.++.+-. +.-+. .+...|+ |++++. -.-..++|.+-++.+............+..- .+..
T Consensus 316 lLllyCKNeyf~lAADvLAEn~-~lTyk~L~~Yly~-LLdaLIt~qT~pEea~KKL~~La~~l~~kLRklAi~vQe~r~~ 393 (459)
T KOG4340|consen 316 LLLLYCKNEYFDLAADVLAENA-HLTYKFLTPYLYD-LLDALITCQTAPEEAFKKLDGLAGMLTEKLRKLAIQVQEARHN 393 (459)
T ss_pred HHHHHhhhHHHhHHHHHHhhCc-chhHHHhhHHHHH-HHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999988886543 11111 1223333 334443 3346666666655542111111111111111 1111
Q ss_pred C----HHHHHHHHHHHHhc-CCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 007400 502 N----IDMGRKVVDQLIDQ-NPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQ 551 (605)
Q Consensus 502 ~----~~~A~~~~~~~~~~-~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 551 (605)
+ ...|++-|++.+++ -| .....+++|++..++..+.+.|..-.+..
T Consensus 394 ~dd~a~R~ai~~Yd~~LE~YLP----VlMa~AkiyW~~~Dy~~vEk~Fr~SvefC 444 (459)
T KOG4340|consen 394 RDDEAIRKAVNEYDETLEKYLP----VLMAQAKIYWNLEDYPMVEKIFRKSVEFC 444 (459)
T ss_pred ccHHHHHHHHHHHHHHHHHHHH----HHHHHHHhhccccccHHHHHHHHHHHhhh
Confidence 1 23455556666666 34 67788999999999999999998766543
No 88
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.16 E-value=2.4e-08 Score=84.14 Aligned_cols=191 Identities=14% Similarity=0.066 Sum_probs=88.8
Q ss_pred HHHhcccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcC-C-CCCcchHHHHHHHHHHcCCHHH
Q 007400 325 CACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTD-N-KENSMLWNTMISALTQHGYDEQ 402 (605)
Q Consensus 325 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~-~~~~~~~~~l~~~~~~~g~~~~ 402 (605)
..|...|+...|..-+++++++. +.+..++..+...|-+.|+.+.|.+.|+... . +.+-...|.....+|..|++++
T Consensus 43 l~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~e 121 (250)
T COG3063 43 LGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEE 121 (250)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCChHH
Confidence 34444444444444444444443 3333444444444444455555544444322 1 1133444445555555555555
Q ss_pred HHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHchHhhCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHh
Q 007400 403 AIRLFHDMVRSSVKPD-KITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPN-QEHHACLIELLAQAGCSDQLMNQLEK 480 (605)
Q Consensus 403 a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~ 480 (605)
|...|++....-.-|. ..+|..+..+..+.|+.+.|...|++.. ...|+ ....-.+.+...+.|++..|...+++
T Consensus 122 A~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL---~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~ 198 (250)
T COG3063 122 AMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRAL---ELDPQFPPALLELARLHYKAGDYAPARLYLER 198 (250)
T ss_pred HHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHH---HhCcCCChHHHHHHHHHHhcccchHHHHHHHH
Confidence 5555555554322222 2355555555555555555555555554 23333 33444455555555555555555554
Q ss_pred CC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 007400 481 MP--YEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQ 519 (605)
Q Consensus 481 ~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 519 (605)
.. ..++..++...+..-...|+.+.+-+.=.++.+..|.
T Consensus 199 ~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~ 239 (250)
T COG3063 199 YQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPY 239 (250)
T ss_pred HHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Confidence 31 2234444443444444555555555555555555553
No 89
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.14 E-value=4.3e-07 Score=92.08 Aligned_cols=177 Identities=14% Similarity=0.083 Sum_probs=123.2
Q ss_pred CChhHHHHHHHHHHHcCCCCChhhHHHHHHHhhhcCChhHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCChhHHHHH
Q 007400 31 GQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKV 110 (605)
Q Consensus 31 g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 110 (605)
.+...|+..|-+..+... -=...|..+...|+...+...|.+.|+...+.. +............|++..+++.|..+
T Consensus 472 K~~~~al~ali~alrld~-~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD--atdaeaaaa~adtyae~~~we~a~~I 548 (1238)
T KOG1127|consen 472 KNSALALHALIRALRLDV-SLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD--ATDAEAAAASADTYAEESTWEEAFEI 548 (1238)
T ss_pred hhHHHHHHHHHHHHhccc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--chhhhhHHHHHHHhhccccHHHHHHH
Confidence 346667777776666542 124578888888887778889999999887665 33333677888999999999999888
Q ss_pred hccCCCCCc-----hHHHHHHHHHHccCChHHHHHHHhhcCC---CCceeHHHHHHHHHhcCChHHHHHHHHHHHhCCCC
Q 007400 111 FDKIPVKNL-----FSYNNMLSGYANLGMMKHARNLFDNMAE---RDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSIS 182 (605)
Q Consensus 111 ~~~~~~~~~-----~~~~~li~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~ 182 (605)
.-...+.++ ..|....-.|.+.++..+|...|+...+ .|...|..++.+|...|++..|.++|.+... +.
T Consensus 549 ~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~--Lr 626 (1238)
T KOG1127|consen 549 CLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASL--LR 626 (1238)
T ss_pred HHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHh--cC
Confidence 444433222 3344455567778888888888888775 3566777888999999999999999988766 44
Q ss_pred CChhhHHHHHH--HHhccCChHHHHHHHHHHHH
Q 007400 183 CNEFSFAGILT--ICVKLEELKLTRQVHGQVLV 213 (605)
Q Consensus 183 p~~~~~~~ll~--~~~~~~~~~~a~~~~~~~~~ 213 (605)
|+. +|...-. .-+..|.+.++...+..+..
T Consensus 627 P~s-~y~~fk~A~~ecd~GkYkeald~l~~ii~ 658 (1238)
T KOG1127|consen 627 PLS-KYGRFKEAVMECDNGKYKEALDALGLIIY 658 (1238)
T ss_pred cHh-HHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 443 2222222 23456788888877776654
No 90
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.13 E-value=5.2e-08 Score=96.65 Aligned_cols=245 Identities=13% Similarity=0.107 Sum_probs=123.0
Q ss_pred HHHHHhcCChHHHHHHHhhcCCC--Cc-chHHHHHHHHHhcCChHHHHHHHhhCCCCC---hhhHHHHHHHHHhC-----
Q 007400 227 VDAYAKCGELSDARRLFDETDAR--DV-LTWTTMVSGYAKLGDMESASKLFNEMPEKN---PVSWTTLIAGYTRN----- 295 (605)
Q Consensus 227 ~~~~~~~g~~~~a~~~~~~~~~~--~~-~~~~~li~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~----- 295 (605)
..++...|++++|++.+++.... |. .........+.+.|+.++|..++..+.+.| ..-|..+..+..-.
T Consensus 11 ~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~~~~ 90 (517)
T PF12569_consen 11 NSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQLSD 90 (517)
T ss_pred HHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhccccc
Confidence 44566778888888777665543 33 234445566667777777777777766532 22334444443222
Q ss_pred CChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhcccchH-HHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHH
Q 007400 296 GLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLK-HGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQV 374 (605)
Q Consensus 296 g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~-~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 374 (605)
.+.+...++|+++... -|.......+.-.+.....+. .+..++..+...|+| .+|+.|-..|....+..-..++
T Consensus 91 ~~~~~~~~~y~~l~~~--yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~~~i~~l 165 (517)
T PF12569_consen 91 EDVEKLLELYDELAEK--YPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEKAAIIESL 165 (517)
T ss_pred ccHHHHHHHHHHHHHh--CccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhHHHHHHHH
Confidence 2345556666666553 244444433333333322332 333445555555543 2455555555544444433333
Q ss_pred HHhcC-----------------CCCCcc--hHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCc
Q 007400 375 FDLTD-----------------NKENSM--LWNTMISALTQHGYDEQAIRLFHDMVRSSVKPD-KITLAVILNACTHSGL 434 (605)
Q Consensus 375 ~~~~~-----------------~~~~~~--~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~ 434 (605)
+.... ..|... ++.-+...|-..|++++|++++++.++ ..|+ ...|..-.+.+-+.|+
T Consensus 166 ~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~--htPt~~ely~~KarilKh~G~ 243 (517)
T PF12569_consen 166 VEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIE--HTPTLVELYMTKARILKHAGD 243 (517)
T ss_pred HHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHh--cCCCcHHHHHHHHHHHHHCCC
Confidence 33211 011221 223344455555666666666666555 2444 3355555555566666
Q ss_pred HHHHHHHHHHchHhhCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHhC
Q 007400 435 VQEGLTYFESMTHDLGIIP-NQEHHACLIELLAQAGCSDQLMNQLEKM 481 (605)
Q Consensus 435 ~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 481 (605)
+.+|...++.+. .+.+ |..+-+..+..+.|+|++++|.+.+...
T Consensus 244 ~~~Aa~~~~~Ar---~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~F 288 (517)
T PF12569_consen 244 LKEAAEAMDEAR---ELDLADRYINSKCAKYLLRAGRIEEAEKTASLF 288 (517)
T ss_pred HHHHHHHHHHHH---hCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhh
Confidence 666666665555 2332 2333444455555666666665555544
No 91
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.11 E-value=1.1e-07 Score=93.12 Aligned_cols=239 Identities=15% Similarity=0.159 Sum_probs=116.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhC-----CC-CCChhh-HHHHHHHHhccCChHHHHHHHHHHHHh-----CC-CC-
Q 007400 153 WNTMIIGYAKSGAVEEGLKFYKVLRRF-----SI-SCNEFS-FAGILTICVKLEELKLTRQVHGQVLVT-----GF-LS- 218 (605)
Q Consensus 153 ~~~li~~~~~~~~~~~a~~~~~~m~~~-----~~-~p~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~~-~~- 218 (605)
...+...|...|+++.|..+++...+. |. .|...+ .+.+...|...+++++|..+|+.++.. |. .|
T Consensus 202 ~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~ 281 (508)
T KOG1840|consen 202 LRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPA 281 (508)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHH
Confidence 333556666666666666666665442 10 122222 222444455555555555555555442 10 11
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHhhcCCCCcchHHHHHHHHHhcCChHHHHHHHhhCCC---CCh-hhHHHHHHHHHh
Q 007400 219 NVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPE---KNP-VSWTTLIAGYTR 294 (605)
Q Consensus 219 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~---~~~-~~~~~l~~~~~~ 294 (605)
-..+++.|..+|.+.|++++|...+++ |.++++.... +.+ ..++.++..+..
T Consensus 282 va~~l~nLa~ly~~~GKf~EA~~~~e~------------------------Al~I~~~~~~~~~~~v~~~l~~~~~~~~~ 337 (508)
T KOG1840|consen 282 VAATLNNLAVLYYKQGKFAEAEEYCER------------------------ALEIYEKLLGASHPEVAAQLSELAAILQS 337 (508)
T ss_pred HHHHHHHHHHHHhccCChHHHHHHHHH------------------------HHHHHHHhhccChHHHHHHHHHHHHHHHH
Confidence 123344444455555555555544433 2234443221 122 235556666777
Q ss_pred CCChHHHHHHHHHHHHC---CCCCChHHHHHHHHHHhcccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHH
Q 007400 295 NGLGQKALELFTRMMIL---RIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDG 371 (605)
Q Consensus 295 ~g~~~~a~~~~~~m~~~---g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 371 (605)
.+++++|..+++...+. -..++. ..-..+++.|...|...|++++|
T Consensus 338 ~~~~Eea~~l~q~al~i~~~~~g~~~-------------------------------~~~a~~~~nl~~l~~~~gk~~ea 386 (508)
T KOG1840|consen 338 MNEYEEAKKLLQKALKIYLDAPGEDN-------------------------------VNLAKIYANLAELYLKMGKYKEA 386 (508)
T ss_pred hcchhHHHHHHHHHHHHHHhhccccc-------------------------------hHHHHHHHHHHHHHHHhcchhHH
Confidence 77777777777755431 011111 11123444555555555555555
Q ss_pred HHHHHhcCC-------C---CCcchHHHHHHHHHHcCCHHHHHHHHHHHH----HCCC-CCCH-HHHHHHHHHHhccCcH
Q 007400 372 RQVFDLTDN-------K---ENSMLWNTMISALTQHGYDEQAIRLFHDMV----RSSV-KPDK-ITLAVILNACTHSGLV 435 (605)
Q Consensus 372 ~~~~~~~~~-------~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~----~~~~-~p~~-~~~~~l~~~~~~~g~~ 435 (605)
.++|+++.. + .....++-+...|.+.+++.+|.++|.+.. ..|. .|+. .+|..|...|...|++
T Consensus 387 ~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~ 466 (508)
T KOG1840|consen 387 EELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNY 466 (508)
T ss_pred HHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccH
Confidence 555543221 0 012234555556666666666666655432 2221 2232 4677777777777777
Q ss_pred HHHHHHHHHch
Q 007400 436 QEGLTYFESMT 446 (605)
Q Consensus 436 ~~a~~~~~~~~ 446 (605)
+.|.++.+.+.
T Consensus 467 e~a~~~~~~~~ 477 (508)
T KOG1840|consen 467 EAAEELEEKVL 477 (508)
T ss_pred HHHHHHHHHHH
Confidence 77777766654
No 92
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.11 E-value=2.8e-07 Score=80.54 Aligned_cols=307 Identities=14% Similarity=0.083 Sum_probs=204.7
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHhhhcCChhHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhc
Q 007400 22 QSFLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKC 101 (605)
Q Consensus 22 ~~~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 101 (605)
..+..+++..++.+|++++....+.. +-+...++.+..+|....++..|...|+++-...|.......| -.+.+-+.
T Consensus 15 aviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY--~AQSLY~A 91 (459)
T KOG4340|consen 15 AVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLY--QAQSLYKA 91 (459)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHH--HHHHHHHh
Confidence 33446678899999999999988865 3477788888889999999999999999998776554443233 34566688
Q ss_pred CChhHHHHHhccCCCC-CchHHHHHHH--HHHccCChHHHHHHHhhcC-CCCceeHHHHHHHHHhcCChHHHHHHHHHHH
Q 007400 102 GSDVDARKVFDKIPVK-NLFSYNNMLS--GYANLGMMKHARNLFDNMA-ERDVVSWNTMIIGYAKSGAVEEGLKFYKVLR 177 (605)
Q Consensus 102 g~~~~a~~~~~~~~~~-~~~~~~~li~--~~~~~~~~~~A~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 177 (605)
+.+.+|+++...|... +...-..-+. .....+++..+..++++.+ +.+..+.+.......+.|+++.|++-|+...
T Consensus 92 ~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAl 171 (459)
T KOG4340|consen 92 CIYADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAAL 171 (459)
T ss_pred cccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHH
Confidence 9999999999998863 3322222222 3345788999999999998 4677777777777789999999999999998
Q ss_pred hCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhH----HHHHHHHHHhcCCh-HHHHHHHhhcCCCCcc
Q 007400 178 RFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVI----SSSIVDAYAKCGEL-SDARRLFDETDARDVL 252 (605)
Q Consensus 178 ~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----~~~l~~~~~~~g~~-~~a~~~~~~~~~~~~~ 252 (605)
+-+---....|+..+. ..+.++++.|.+...++++.|++..... -...+++- ..|+. ..+..- =..
T Consensus 172 qvsGyqpllAYniALa-Hy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvr-svgNt~~lh~Sa-------l~e 242 (459)
T KOG4340|consen 172 QVSGYQPLLAYNLALA-HYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVR-SVGNTLVLHQSA-------LVE 242 (459)
T ss_pred hhcCCCchhHHHHHHH-HHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchh-cccchHHHHHHH-------HHH
Confidence 8554445567776654 4567899999999999999886422211 00001100 00100 000000 011
Q ss_pred hHHHHHHHHHhcCChHHHHHHHhhCCCC-----ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChHHHHHHHHHH
Q 007400 253 TWTTMVSGYAKLGDMESASKLFNEMPEK-----NPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCAC 327 (605)
Q Consensus 253 ~~~~li~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 327 (605)
.+|.-...+.+.|+++.|.+.+..|+.+ |+++...+.-. -..+++....+-+.-+...+ +....||..++-.|
T Consensus 243 AfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~n-PfP~ETFANlLlly 320 (459)
T KOG4340|consen 243 AFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQN-PFPPETFANLLLLY 320 (459)
T ss_pred HhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcC-CCChHHHHHHHHHH
Confidence 2333344467788888888888888753 66665544322 12344555555555555543 34456888888888
Q ss_pred hcccchHHHHHHHHH
Q 007400 328 ASIVSLKHGKQVHGF 342 (605)
Q Consensus 328 ~~~~~~~~a~~~~~~ 342 (605)
|+..-++.|..++.+
T Consensus 321 CKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 321 CKNEYFDLAADVLAE 335 (459)
T ss_pred hhhHHHhHHHHHHhh
Confidence 888888888777654
No 93
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.05 E-value=3.7e-07 Score=86.60 Aligned_cols=436 Identities=10% Similarity=-0.007 Sum_probs=248.2
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHhhhcCChhHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCChh
Q 007400 26 SLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDV 105 (605)
Q Consensus 26 ~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 105 (605)
..++.|+++.|+..|.+..... +++...|..-..++...|++++|++=-.+-++..+..+. .|+....++.-.|+++
T Consensus 11 aa~s~~d~~~ai~~~t~ai~l~-p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~k--gy~r~Gaa~~~lg~~~ 87 (539)
T KOG0548|consen 11 AAFSSGDFETAIRLFTEAIMLS-PTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAK--GYSRKGAALFGLGDYE 87 (539)
T ss_pred hhcccccHHHHHHHHHHHHccC-CCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhh--HHHHhHHHHHhcccHH
Confidence 4567899999999999998876 557778888888999999999998877777766655544 6999999999999999
Q ss_pred HHHHHhccCCCC---CchHHHHHHHHHHccCChHHH-HHHHhhcCCCCceeHHHHH-----HHHHhcCChHHHHHHHHHH
Q 007400 106 DARKVFDKIPVK---NLFSYNNMLSGYANLGMMKHA-RNLFDNMAERDVVSWNTMI-----IGYAKSGAVEEGLKFYKVL 176 (605)
Q Consensus 106 ~a~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~A-~~~~~~~~~~~~~~~~~li-----~~~~~~~~~~~a~~~~~~m 176 (605)
+|+..|.+-.+. |...++-+..++ ..+.+ .+.|. ++..|..+. +.+...-.+... ++..
T Consensus 88 eA~~ay~~GL~~d~~n~~L~~gl~~a~----~~~~~~~~~~~-----~p~~~~~l~~~p~t~~~~~~~~~~~~---l~~~ 155 (539)
T KOG0548|consen 88 EAILAYSEGLEKDPSNKQLKTGLAQAY----LEDYAADQLFT-----KPYFHEKLANLPLTNYSLSDPAYVKI---LEII 155 (539)
T ss_pred HHHHHHHHHhhcCCchHHHHHhHHHhh----hHHHHhhhhcc-----CcHHHHHhhcChhhhhhhccHHHHHH---HHHh
Confidence 999999887653 345566666555 11111 11111 111121111 111111111111 1111
Q ss_pred HhCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhcCCC-------
Q 007400 177 RRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDAR------- 249 (605)
Q Consensus 177 ~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------- 249 (605)
.+ .|+. . ..+.. .+...+..-.+...+.. .+...-......+.... .....+
T Consensus 156 ~~---~p~~--l----~~~l~---d~r~m~a~~~l~~~~~~----~~~~~~~~~~~~~~~p~-----~~~~~~~~~~~d~ 214 (539)
T KOG0548|consen 156 QK---NPTS--L----KLYLN---DPRLMKADGQLKGVDEL----LFYASGIEILASMAEPC-----KQEHNGFPIIEDN 214 (539)
T ss_pred hc---CcHh--h----hcccc---cHHHHHHHHHHhcCccc----cccccccccCCCCCCcc-----cccCCCCCccchh
Confidence 11 0110 0 00000 11111111111000000 00000000000000000 000000
Q ss_pred --------CcchHHHHHHHHHhcCChHHHHHHHhhCCCC--ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChHH
Q 007400 250 --------DVLTWTTMVSGYAKLGDMESASKLFNEMPEK--NPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHT 319 (605)
Q Consensus 250 --------~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~ 319 (605)
-......+.++..+..+++.|++.+....+- ++.-++....+|...|.+.++...-....+.|- -...-
T Consensus 215 ~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gr-e~rad 293 (539)
T KOG0548|consen 215 TEERRVKEKAHKEKELGNAAYKKKDFETAIQHYAKALELATDITYLNNIAAVYLERGKYAECIELCEKAVEVGR-ELRAD 293 (539)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHhhhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhH-HHHHH
Confidence 1123455667777778888888888776553 444567777888888888887777776665542 11222
Q ss_pred HHH-------HHHHHhcccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCC-CCCc-chHHHH
Q 007400 320 FSS-------CLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDN-KENS-MLWNTM 390 (605)
Q Consensus 320 ~~~-------ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~-~~~~~l 390 (605)
|+. +..++.+.++++.+...|.+.+.....|+ ...+....+++....+...- .|.. .-...-
T Consensus 294 ~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~---------~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~k 364 (539)
T KOG0548|consen 294 YKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRTPD---------LLSKLKEAEKALKEAERKAYINPEKAEEEREK 364 (539)
T ss_pred HHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHH---------HHHHHHHHHHHHHHHHHHHhhChhHHHHHHHH
Confidence 222 33456667888999999988776543432 22333445555555543321 1222 112223
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHchHhhCCCCC-HHHHHHHHHHHHhc
Q 007400 391 ISALTQHGYDEQAIRLFHDMVRSSVKP-DKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPN-QEHHACLIELLAQA 468 (605)
Q Consensus 391 ~~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~ 468 (605)
...+.+.|++..|+..|.+++... | |...|.....+|.+.|.+..|+.-.+..+ ...|+ ...|..=+.++...
T Consensus 365 Gne~Fk~gdy~~Av~~YteAIkr~--P~Da~lYsNRAac~~kL~~~~~aL~Da~~~i---eL~p~~~kgy~RKg~al~~m 439 (539)
T KOG0548|consen 365 GNEAFKKGDYPEAVKHYTEAIKRD--PEDARLYSNRAACYLKLGEYPEALKDAKKCI---ELDPNFIKAYLRKGAALRAM 439 (539)
T ss_pred HHHHHhccCHHHHHHHHHHHHhcC--CchhHHHHHHHHHHHHHhhHHHHHHHHHHHH---hcCchHHHHHHHHHHHHHHH
Confidence 566888999999999999999964 5 66799999999999999999999888877 45666 55666666667777
Q ss_pred CChHHHHHHHHhCC-CCCCHHHHHHHHHHHHhc-CCHHHHHHHHHH
Q 007400 469 GCSDQLMNQLEKMP-YEHDSYLWNALHGVCRIH-GNIDMGRKVVDQ 512 (605)
Q Consensus 469 g~~~~A~~~~~~~~-~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~ 512 (605)
.++++|.+.|++.. ..|+..-+..-+.-|..+ .......++.++
T Consensus 440 k~ydkAleay~eale~dp~~~e~~~~~~rc~~a~~~~~~~ee~~~r 485 (539)
T KOG0548|consen 440 KEYDKALEAYQEALELDPSNAEAIDGYRRCVEAQRGDETPEETKRR 485 (539)
T ss_pred HHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHhhcCCCHHHHHHh
Confidence 78999999998863 344443333333333332 223334444444
No 94
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.05 E-value=1.3e-05 Score=81.86 Aligned_cols=358 Identities=12% Similarity=0.086 Sum_probs=191.2
Q ss_pred CCceeHHHHHHHHHhcCChHHHHHHHHHHHhCCC--CCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHH
Q 007400 148 RDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSI--SCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSS 225 (605)
Q Consensus 148 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~--~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 225 (605)
.|+...+..+.++...+-+.+-++++++..-.+- .-+...-+.++-...+ -+..+..++.+++-..+. |+
T Consensus 982 ~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAik-ad~trVm~YI~rLdnyDa-~~------ 1053 (1666)
T KOG0985|consen 982 QDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIK-ADRTRVMEYINRLDNYDA-PD------ 1053 (1666)
T ss_pred CChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhh-cChHHHHHHHHHhccCCc-hh------
Confidence 4666667777888888888888888887653111 1111122223322222 233333344333322111 11
Q ss_pred HHHHHHhcCChHHHHHHHhhcCC-------------------------CCcchHHHHHHHHHhcCChHHHHHHHhhCCCC
Q 007400 226 IVDAYAKCGELSDARRLFDETDA-------------------------RDVLTWTTMVSGYAKLGDMESASKLFNEMPEK 280 (605)
Q Consensus 226 l~~~~~~~g~~~~a~~~~~~~~~-------------------------~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~ 280 (605)
+.......+-+++|..+|++..- ..+..|+.+..+-.+.|...+|++-|-+. .
T Consensus 1054 ia~iai~~~LyEEAF~ifkkf~~n~~A~~VLie~i~~ldRA~efAe~~n~p~vWsqlakAQL~~~~v~dAieSyika--d 1131 (1666)
T KOG0985|consen 1054 IAEIAIENQLYEEAFAIFKKFDMNVSAIQVLIENIGSLDRAYEFAERCNEPAVWSQLAKAQLQGGLVKDAIESYIKA--D 1131 (1666)
T ss_pred HHHHHhhhhHHHHHHHHHHHhcccHHHHHHHHHHhhhHHHHHHHHHhhCChHHHHHHHHHHHhcCchHHHHHHHHhc--C
Confidence 22233334444455544444321 02344555555555555555555554333 2
Q ss_pred ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhcccchHHHHHHHHHHHHcCCCCChhHHHHHHH
Q 007400 281 NPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLID 360 (605)
Q Consensus 281 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 360 (605)
|+..|.-++....+.|.+++-..++....+..-.|... +.++-+|++.+++.+.+.++ ..|+..-...+.+
T Consensus 1132 Dps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi-------~gpN~A~i~~vGd 1202 (1666)
T KOG0985|consen 1132 DPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEFI-------AGPNVANIQQVGD 1202 (1666)
T ss_pred CcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHHh-------cCCCchhHHHHhH
Confidence 33445555555555555555555555554444344333 23455555555544433332 1344444445555
Q ss_pred HHHhcCChHHHHHHHHhcCCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHH
Q 007400 361 MYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLT 440 (605)
Q Consensus 361 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~ 440 (605)
-+...|.++.|.-+|. ++..|..|...+...|++..|...-++. .+..||..+-.+|...+.+.-|.
T Consensus 1203 rcf~~~~y~aAkl~y~------~vSN~a~La~TLV~LgeyQ~AVD~aRKA------ns~ktWK~VcfaCvd~~EFrlAQ- 1269 (1666)
T KOG0985|consen 1203 RCFEEKMYEAAKLLYS------NVSNFAKLASTLVYLGEYQGAVDAARKA------NSTKTWKEVCFACVDKEEFRLAQ- 1269 (1666)
T ss_pred HHhhhhhhHHHHHHHH------HhhhHHHHHHHHHHHHHHHHHHHHhhhc------cchhHHHHHHHHHhchhhhhHHH-
Confidence 5555555555555554 5555677777777777777776654432 24557777777777766654442
Q ss_pred HHHHchHhhCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--
Q 007400 441 YFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKM-PY-EHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQ-- 516 (605)
Q Consensus 441 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-- 516 (605)
|- -.++....+-...|+..|...|.+++.+.+++.. +. +.....|.-|+-.|.+- +.++-.+.++-....
T Consensus 1270 ----iC-GL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYsky-kp~km~EHl~LFwsRvN 1343 (1666)
T KOG0985|consen 1270 ----IC-GLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAILYSKY-KPEKMMEHLKLFWSRVN 1343 (1666)
T ss_pred ----hc-CceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhcc
Confidence 22 1122334556677888888888888888888764 21 23344555565555543 355555555544443
Q ss_pred CCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 007400 517 NPQSSATHGLLSSIYSALGKGRLVEKVRQLINER 550 (605)
Q Consensus 517 ~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 550 (605)
-| .+.+++..+-.|.+..-++.+..+.
T Consensus 1344 ip-------KviRA~eqahlW~ElvfLY~~y~ey 1370 (1666)
T KOG0985|consen 1344 IP-------KVIRAAEQAHLWSELVFLYDKYEEY 1370 (1666)
T ss_pred hH-------HHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 23 4667777777888887777766554
No 95
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.02 E-value=9.9e-09 Score=97.84 Aligned_cols=216 Identities=13% Similarity=0.092 Sum_probs=162.5
Q ss_pred hcccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCC--CCCcchHHHHHHHHHHcCCHHHHHH
Q 007400 328 ASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDN--KENSMLWNTMISALTQHGYDEQAIR 405 (605)
Q Consensus 328 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~ 405 (605)
.+.|++.+|.-.|+..++.+ |-+...|..|.......++-..|+..+++..+ +.|......|...|...|.-.+|+.
T Consensus 296 m~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~ 374 (579)
T KOG1125|consen 296 MKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALK 374 (579)
T ss_pred HhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHH
Confidence 45566777777777777665 55667777777777777777777777765442 2256677777778888888888888
Q ss_pred HHHHHHHCCCCCCHHHHHHHH-----------HHHhccCcHHHHHHHHHHchHhhCCCCCHHHHHHHHHHHHhcCChHHH
Q 007400 406 LFHDMVRSSVKPDKITLAVIL-----------NACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQL 474 (605)
Q Consensus 406 ~~~~m~~~~~~p~~~~~~~l~-----------~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 474 (605)
.++.-+... |- |..+. ..+..........++|-.+....+..+|+++...|.-.|.-.|++++|
T Consensus 375 ~L~~Wi~~~--p~---y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdra 449 (579)
T KOG1125|consen 375 MLDKWIRNK--PK---YVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRA 449 (579)
T ss_pred HHHHHHHhC--cc---chhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHH
Confidence 888776532 11 00110 122223334555666666654556668889999999999999999999
Q ss_pred HHHHHhC-CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 007400 475 MNQLEKM-PYE-HDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINE 549 (605)
Q Consensus 475 ~~~~~~~-~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 549 (605)
.+.|+.. .++ .|...|+.|+..++...+.++|+..|.+++++.|.-..+.+.|+..|...|.|.+|...|=.+..
T Consensus 450 iDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~ 526 (579)
T KOG1125|consen 450 VDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALS 526 (579)
T ss_pred HHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 9999986 344 46789999999999999999999999999999999999999999999999999999998876654
No 96
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.02 E-value=3.5e-05 Score=85.68 Aligned_cols=323 Identities=11% Similarity=0.025 Sum_probs=205.7
Q ss_pred HHHhcCChHHHHHHHhhcCC----CCcchHHHHHHHHHhcCChHHHHHHHhhCCC----C----C----hhhHHHHHHHH
Q 007400 229 AYAKCGELSDARRLFDETDA----RDVLTWTTMVSGYAKLGDMESASKLFNEMPE----K----N----PVSWTTLIAGY 292 (605)
Q Consensus 229 ~~~~~g~~~~a~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~----~----~----~~~~~~l~~~~ 292 (605)
.....|+++.+...++.+.. .++.........+...|++++|..++..... . + ......+...+
T Consensus 383 ~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~ 462 (903)
T PRK04841 383 SLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVA 462 (903)
T ss_pred HHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHH
Confidence 44556778877777776632 2333334445556678888888887765421 1 1 11222334456
Q ss_pred HhCCChHHHHHHHHHHHHCCCCCCh----HHHHHHHHHHhcccchHHHHHHHHHHHHcCC---CC--ChhHHHHHHHHHH
Q 007400 293 TRNGLGQKALELFTRMMILRIRPNQ----HTFSSCLCACASIVSLKHGKQVHGFLIRTNF---RS--NTIVMSSLIDMYS 363 (605)
Q Consensus 293 ~~~g~~~~a~~~~~~m~~~g~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~---~~--~~~~~~~l~~~~~ 363 (605)
...|++++|...+++....-...+. .....+...+...|+++.|...+.+.....- .+ .......+...+.
T Consensus 463 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~ 542 (903)
T PRK04841 463 INDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILF 542 (903)
T ss_pred HhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHH
Confidence 6789999999999987763111121 2334455566778999999998888764311 11 1234455677788
Q ss_pred hcCChHHHHHHHHhcCC------CCC----cchHHHHHHHHHHcCCHHHHHHHHHHHHHCC--CCCC--HHHHHHHHHHH
Q 007400 364 KCGCLNDGRQVFDLTDN------KEN----SMLWNTMISALTQHGYDEQAIRLFHDMVRSS--VKPD--KITLAVILNAC 429 (605)
Q Consensus 364 ~~g~~~~A~~~~~~~~~------~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~--~~p~--~~~~~~l~~~~ 429 (605)
..|+++.|...+++... .++ ...+..+...+...|++++|...+++..... ..+. ...+..+...+
T Consensus 543 ~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~ 622 (903)
T PRK04841 543 AQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKIS 622 (903)
T ss_pred HCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHH
Confidence 89999999888775321 111 1234455566777899999999988876531 1122 23455566677
Q ss_pred hccCcHHHHHHHHHHchHhhCCC-CCHH--HH--HHHHHHHHhcCChHHHHHHHHhCCCC--CCH----HHHHHHHHHHH
Q 007400 430 THSGLVQEGLTYFESMTHDLGII-PNQE--HH--ACLIELLAQAGCSDQLMNQLEKMPYE--HDS----YLWNALHGVCR 498 (605)
Q Consensus 430 ~~~g~~~~a~~~~~~~~~~~~~~-p~~~--~~--~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~----~~~~~l~~~~~ 498 (605)
...|+++.|...++.+..-.... .... .. ......+...|+.+.|..++...... ... ..+..++.++.
T Consensus 623 ~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~ 702 (903)
T PRK04841 623 LARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQI 702 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHH
Confidence 88999999999988875221111 1111 10 11224455688999999998775311 111 11345677788
Q ss_pred hcCCHHHHHHHHHHHHhcC------CCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 007400 499 IHGNIDMGRKVVDQLIDQN------PQSSATHGLLSSIYSALGKGRLVEKVRQLINERQ 551 (605)
Q Consensus 499 ~~g~~~~A~~~~~~~~~~~------p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 551 (605)
..|++++|...++++++.. +....++..++.++.+.|+.++|...+.+..+..
T Consensus 703 ~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 703 LLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 8999999999999998762 1123467788999999999999999998887643
No 97
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.99 E-value=1.4e-08 Score=93.63 Aligned_cols=147 Identities=16% Similarity=0.172 Sum_probs=93.2
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHchHhhCCCCCHHHHHHHHHHH----Hhc
Q 007400 393 ALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELL----AQA 468 (605)
Q Consensus 393 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~----~~~ 468 (605)
.+...|++++|++++++. .+.......+.++.+.++++.|.+.++.|. .+..|. +...|..++ .-.
T Consensus 111 i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~---~~~eD~-~l~qLa~awv~l~~g~ 180 (290)
T PF04733_consen 111 ILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQ---QIDEDS-ILTQLAEAWVNLATGG 180 (290)
T ss_dssp HHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHH---CCSCCH-HHHHHHHHHHHHHHTT
T ss_pred HHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHH---hcCCcH-HHHHHHHHHHHHHhCc
Confidence 344556777766665431 244555666667777777777777777766 334442 222233322 222
Q ss_pred CChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCc-hHHHHHHH
Q 007400 469 GCSDQLMNQLEKMP--YEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKG-RLVEKVRQ 545 (605)
Q Consensus 469 g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~-~~a~~~~~ 545 (605)
+.+.+|..+|+++. ..+++.+.+.++.+....|++++|.++++++++.+|.++.++..++.+....|+. +.+.+++.
T Consensus 181 e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~ 260 (290)
T PF04733_consen 181 EKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLS 260 (290)
T ss_dssp TCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHH
Confidence 35777777777763 3466777777888888888888888888888888888888888888888888887 55666777
Q ss_pred HHHh
Q 007400 546 LINE 549 (605)
Q Consensus 546 ~~~~ 549 (605)
++..
T Consensus 261 qL~~ 264 (290)
T PF04733_consen 261 QLKQ 264 (290)
T ss_dssp HCHH
T ss_pred HHHH
Confidence 7654
No 98
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.99 E-value=5.2e-05 Score=75.89 Aligned_cols=158 Identities=13% Similarity=0.140 Sum_probs=84.4
Q ss_pred hcCChhHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCChhHHHHHhccCCCCC-chHHHHHHHHHHccCChHHHHHHH
Q 007400 64 ESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKN-LFSYNNMLSGYANLGMMKHARNLF 142 (605)
Q Consensus 64 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~A~~~~ 142 (605)
..|.+++|..+|.+-. -|..|-..|-..|.+++|.++-+.-.+-. ..||-.....+-..++++.|++.|
T Consensus 812 eLgMlEeA~~lYr~ck----------R~DLlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~Di~~Aleyy 881 (1416)
T KOG3617|consen 812 ELGMLEEALILYRQCK----------RYDLLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARRDIEAALEYY 881 (1416)
T ss_pred HHhhHHHHHHHHHHHH----------HHHHHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhccHHHHHHHH
Confidence 3455555555555443 23333444455566666666554443211 235555566666666777777777
Q ss_pred hhcCC-----------------------CCceeHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccC
Q 007400 143 DNMAE-----------------------RDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLE 199 (605)
Q Consensus 143 ~~~~~-----------------------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~ 199 (605)
++... +|...|..-...+-..|+.+.|+.+|...+. |-++.+..+-.|
T Consensus 882 EK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~C~qG 952 (1416)
T KOG3617|consen 882 EKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIKCIQG 952 (1416)
T ss_pred HhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeEeecc
Confidence 66432 1333333333333444555555555554443 444555555566
Q ss_pred ChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhc
Q 007400 200 ELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDET 246 (605)
Q Consensus 200 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 246 (605)
+.++|-++-++- -|......|.+.|-..|++.+|...|.+.
T Consensus 953 k~~kAa~iA~es------gd~AAcYhlaR~YEn~g~v~~Av~FfTrA 993 (1416)
T KOG3617|consen 953 KTDKAARIAEES------GDKAACYHLARMYENDGDVVKAVKFFTRA 993 (1416)
T ss_pred CchHHHHHHHhc------ccHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 666666655432 24445555667777777777777666554
No 99
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.96 E-value=1.9e-06 Score=77.08 Aligned_cols=307 Identities=12% Similarity=0.074 Sum_probs=186.3
Q ss_pred eHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHH---HHHhccCChHHHHHHHHHHHHhCCCCChhHH-HHHH
Q 007400 152 SWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGIL---TICVKLEELKLTRQVHGQVLVTGFLSNVVIS-SSIV 227 (605)
Q Consensus 152 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll---~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~ 227 (605)
-..-+...+..+|++..|+..|....+ .|+..|.++. ..|...|+...|..=+..+++. +||-..- -.-.
T Consensus 40 khlElGk~lla~~Q~sDALt~yHaAve----~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg 113 (504)
T KOG0624|consen 40 KHLELGKELLARGQLSDALTHYHAAVE----GDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRG 113 (504)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHc----CCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhc
Confidence 334455566666777777777766655 3334444433 3455556666666655555543 3443221 1123
Q ss_pred HHHHhcCChHHHHHHHhhcCCCCcchHHHHHHHHHhcCChHHHHHHHhhCCCCChhhHHHHHHHHHhCCChHHHHHHHHH
Q 007400 228 DAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTR 307 (605)
Q Consensus 228 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 307 (605)
..+.+.|.++.|..-|+.+...++.. |...+|..-+..+. ........+..+...|+...|++....
T Consensus 114 ~vllK~Gele~A~~DF~~vl~~~~s~-----------~~~~eaqskl~~~~--e~~~l~~ql~s~~~~GD~~~ai~~i~~ 180 (504)
T KOG0624|consen 114 VVLLKQGELEQAEADFDQVLQHEPSN-----------GLVLEAQSKLALIQ--EHWVLVQQLKSASGSGDCQNAIEMITH 180 (504)
T ss_pred hhhhhcccHHHHHHHHHHHHhcCCCc-----------chhHHHHHHHHhHH--HHHHHHHHHHHHhcCCchhhHHHHHHH
Confidence 34556666666666665554432210 00000000000000 001122234455667888888888888
Q ss_pred HHHCCCCCChHHHHHHHHHHhcccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCC-CCCcch
Q 007400 308 MMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDN-KENSML 386 (605)
Q Consensus 308 m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~ 386 (605)
+++. .+.|...|..-..+|...|.+..|..-++...+.. ..+...+--+-..+...|+.+.++...++... .||...
T Consensus 181 llEi-~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~ 258 (504)
T KOG0624|consen 181 LLEI-QPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKL 258 (504)
T ss_pred HHhc-CcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhh
Confidence 8774 25677777777788888888888887777776654 34455555666777788888888777776443 233321
Q ss_pred ----HHHH---------HHHHHHcCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHhccCcHHHHHHHHHHchHhhC
Q 007400 387 ----WNTM---------ISALTQHGYDEQAIRLFHDMVRSSVKPDK---ITLAVILNACTHSGLVQEGLTYFESMTHDLG 450 (605)
Q Consensus 387 ----~~~l---------~~~~~~~g~~~~a~~~~~~m~~~~~~p~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 450 (605)
|..+ +......++|.++++..+...+....... ..+..+-.++...|++.+|++...++. .
T Consensus 259 Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL---~ 335 (504)
T KOG0624|consen 259 CFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVL---D 335 (504)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHH---h
Confidence 1111 12245578888888888888875322112 245556667788899999999999988 7
Q ss_pred CCCC-HHHHHHHHHHHHhcCChHHHHHHHHhCC
Q 007400 451 IIPN-QEHHACLIELLAQAGCSDQLMNQLEKMP 482 (605)
Q Consensus 451 ~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 482 (605)
+.|+ +.++..-..+|.-...++.|+.-|++..
T Consensus 336 ~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~ 368 (504)
T KOG0624|consen 336 IDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKAL 368 (504)
T ss_pred cCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 7887 8888888899999999999999998874
No 100
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.96 E-value=2.4e-05 Score=78.24 Aligned_cols=183 Identities=9% Similarity=0.041 Sum_probs=96.2
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHH
Q 007400 160 YAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDA 239 (605)
Q Consensus 160 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 239 (605)
....|.+++|..+|++.++ |..+=+.|-..|.+++|.++-+.--.. . =..||..-..-+-..++.+.|
T Consensus 810 AieLgMlEeA~~lYr~ckR---------~DLlNKlyQs~g~w~eA~eiAE~~DRi--H-Lr~Tyy~yA~~Lear~Di~~A 877 (1416)
T KOG3617|consen 810 AIELGMLEEALILYRQCKR---------YDLLNKLYQSQGMWSEAFEIAETKDRI--H-LRNTYYNYAKYLEARRDIEAA 877 (1416)
T ss_pred HHHHhhHHHHHHHHHHHHH---------HHHHHHHHHhcccHHHHHHHHhhccce--e-hhhhHHHHHHHHHhhccHHHH
Confidence 3455666777777766665 233334455566666666654422111 1 123444444445556667777
Q ss_pred HHHHhhcCCCCcchHHHHHHHHHhcCChHHHHHHHhhCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChHH
Q 007400 240 RRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHT 319 (605)
Q Consensus 240 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~ 319 (605)
++.|++...+-...+..|. .+........+++.+ ...|.-..+.+-..|+.+.|+.+|....+
T Consensus 878 leyyEK~~~hafev~rmL~------e~p~~~e~Yv~~~~d--~~L~~WWgqYlES~GemdaAl~~Y~~A~D--------- 940 (1416)
T KOG3617|consen 878 LEYYEKAGVHAFEVFRMLK------EYPKQIEQYVRRKRD--ESLYSWWGQYLESVGEMDAALSFYSSAKD--------- 940 (1416)
T ss_pred HHHHHhcCChHHHHHHHHH------hChHHHHHHHHhccc--hHHHHHHHHHHhcccchHHHHHHHHHhhh---------
Confidence 7766665433221111111 111222233333332 23344444455566777777777776553
Q ss_pred HHHHHHHHhcccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHh
Q 007400 320 FSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDL 377 (605)
Q Consensus 320 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 377 (605)
|-.+++..|-+|+.++|.++-++ .-|....-.|.+.|...|++.+|...|.+
T Consensus 941 ~fs~VrI~C~qGk~~kAa~iA~e------sgd~AAcYhlaR~YEn~g~v~~Av~FfTr 992 (1416)
T KOG3617|consen 941 YFSMVRIKCIQGKTDKAARIAEE------SGDKAACYHLARMYENDGDVVKAVKFFTR 992 (1416)
T ss_pred hhhheeeEeeccCchHHHHHHHh------cccHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 34455556666777777666443 22444555667777777777777777653
No 101
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.92 E-value=2.7e-06 Score=83.16 Aligned_cols=260 Identities=10% Similarity=-0.054 Sum_probs=153.6
Q ss_pred HHHHHhCCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHh----cccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHh
Q 007400 289 IAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACA----SIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSK 364 (605)
Q Consensus 289 ~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 364 (605)
...+...|++++|...+++..+.. +.+...+.. ...+. ..+....+.+.+.. .....+........+...+..
T Consensus 50 a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~a~~~~~ 126 (355)
T cd05804 50 ALSAWIAGDLPKALALLEQLLDDY-PRDLLALKL-HLGAFGLGDFSGMRDHVARVLPL-WAPENPDYWYLLGMLAFGLEE 126 (355)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHH-hHHHHHhcccccCchhHHHHHhc-cCcCCCCcHHHHHHHHHHHHH
Confidence 345566788888888888877642 223323331 11222 23444444444443 111112223344456667888
Q ss_pred cCChHHHHHHHHhcCC--CCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCCH--HHHHHHHHHHhccCcHHHHH
Q 007400 365 CGCLNDGRQVFDLTDN--KENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSV-KPDK--ITLAVILNACTHSGLVQEGL 439 (605)
Q Consensus 365 ~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~-~p~~--~~~~~l~~~~~~~g~~~~a~ 439 (605)
.|++++|.+.++.... +.+...+..+...+...|++++|...+++...... .|+. ..+..+...+...|++++|.
T Consensus 127 ~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~ 206 (355)
T cd05804 127 AGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAAL 206 (355)
T ss_pred cCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHH
Confidence 8888888888886543 22456677788888888999999988888776422 1222 24556777888889999999
Q ss_pred HHHHHchHhhCCCCCHHHH-H--HHHHHHHhcCChHHHHHH---HHhC----CCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 007400 440 TYFESMTHDLGIIPNQEHH-A--CLIELLAQAGCSDQLMNQ---LEKM----PYEHDSYLWNALHGVCRIHGNIDMGRKV 509 (605)
Q Consensus 440 ~~~~~~~~~~~~~p~~~~~-~--~l~~~~~~~g~~~~A~~~---~~~~----~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 509 (605)
.+++++.......+..... . .+...+...|....+.++ .... ............+.++...|+.+.|...
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~ 286 (355)
T cd05804 207 AIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKL 286 (355)
T ss_pred HHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHH
Confidence 9998875221111222111 1 233334444533322222 1111 1111112222456677788999999999
Q ss_pred HHHHHhcC-C--------CCCchHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 007400 510 VDQLIDQN-P--------QSSATHGLLSSIYSALGKGRLVEKVRQLINERQ 551 (605)
Q Consensus 510 ~~~~~~~~-p--------~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 551 (605)
++.+.... . .........+.++...|++++|.+.+......+
T Consensus 287 L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 287 LAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred HHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 98887642 1 123455677888899999999999999887653
No 102
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.88 E-value=2.7e-07 Score=84.18 Aligned_cols=181 Identities=11% Similarity=0.073 Sum_probs=120.0
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHHhcCCC-CC-c---chHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH----
Q 007400 350 SNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNK-EN-S---MLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKI---- 420 (605)
Q Consensus 350 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~-~---~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~---- 420 (605)
.....+..++..+...|+++.|...|+.+... |+ . .++..+..++...|++++|...++++++. .|+..
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~ 108 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRL--HPNHPDADY 108 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCchHH
Confidence 34556666777777888888888888765432 22 1 35566777778888888888888888773 34321
Q ss_pred HHHHHHHHHhcc--------CcHHHHHHHHHHchHhhCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHH
Q 007400 421 TLAVILNACTHS--------GLVQEGLTYFESMTHDLGIIPNQ-EHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWN 491 (605)
Q Consensus 421 ~~~~l~~~~~~~--------g~~~~a~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 491 (605)
++..+..++... |+++.|...++.+.. ..|+. .....+..... .... . .....
T Consensus 109 a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~---~~p~~~~~~~a~~~~~~----~~~~---~--------~~~~~ 170 (235)
T TIGR03302 109 AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIR---RYPNSEYAPDAKKRMDY----LRNR---L--------AGKEL 170 (235)
T ss_pred HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHH---HCCCChhHHHHHHHHHH----HHHH---H--------HHHHH
Confidence 455555555543 667778888877772 23432 22211111100 0000 0 01123
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCC---chHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 007400 492 ALHGVCRIHGNIDMGRKVVDQLIDQNPQSS---ATHGLLSSIYSALGKGRLVEKVRQLINER 550 (605)
Q Consensus 492 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 550 (605)
.++..+...|++++|...++++++..|+++ ..+..++.++...|++++|..+++.+..+
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 566778899999999999999999977654 68899999999999999999999988654
No 103
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.88 E-value=1.1e-07 Score=87.84 Aligned_cols=226 Identities=15% Similarity=0.091 Sum_probs=147.3
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhcccchHHHHHHHHHHHHcCCC-CChhHHHHHHHHH
Q 007400 284 SWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFR-SNTIVMSSLIDMY 362 (605)
Q Consensus 284 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~ 362 (605)
....+.+++...|+++.++. ++.... .|.......+...+...++-+.+..-++........ .+..+......++
T Consensus 37 ~~~~~~Rs~iAlg~~~~vl~---ei~~~~-~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~ 112 (290)
T PF04733_consen 37 RDFYQYRSYIALGQYDSVLS---EIKKSS-SPELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAATIL 112 (290)
T ss_dssp HHHHHHHHHHHTT-HHHHHH---HS-TTS-SCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChhHHHH---HhccCC-ChhHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHHH
Confidence 34455667777787765543 332222 566666655555555444444444444433333322 2333333444567
Q ss_pred HhcCChHHHHHHHHhcCCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh----ccCcHHHH
Q 007400 363 SKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACT----HSGLVQEG 438 (605)
Q Consensus 363 ~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~----~~g~~~~a 438 (605)
...|++++|++++... .+.......+..|.+.++++.|.+.++.|.+ ...| .+...+..++. ..+.+.+|
T Consensus 113 ~~~~~~~~AL~~l~~~---~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~--~~eD-~~l~qLa~awv~l~~g~e~~~~A 186 (290)
T PF04733_consen 113 FHEGDYEEALKLLHKG---GSLELLALAVQILLKMNRPDLAEKELKNMQQ--IDED-SILTQLAEAWVNLATGGEKYQDA 186 (290)
T ss_dssp CCCCHHHHHHCCCTTT---TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC--CSCC-HHHHHHHHHHHHHHHTTTCCCHH
T ss_pred HHcCCHHHHHHHHHcc---CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCc-HHHHHHHHHHHHHHhCchhHHHH
Confidence 7789999988888765 2566677788889999999999999999987 3444 34444444433 23468999
Q ss_pred HHHHHHchHhhCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHh
Q 007400 439 LTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKM-P-YEHDSYLWNALHGVCRIHGNI-DMGRKVVDQLID 515 (605)
Q Consensus 439 ~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~ 515 (605)
..+|+++. + ...+++.+.+.+..+....|++++|.+++++. . .+.++.++..++.+....|+. +.+.+++.++..
T Consensus 187 ~y~f~El~-~-~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~ 264 (290)
T PF04733_consen 187 FYIFEELS-D-KFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQ 264 (290)
T ss_dssp HHHHHHHH-C-CS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHH
T ss_pred HHHHHHHH-h-ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence 99999987 3 45678888999999999999999999999875 2 334566777788777788877 677888888888
Q ss_pred cCCCCC
Q 007400 516 QNPQSS 521 (605)
Q Consensus 516 ~~p~~~ 521 (605)
..|+++
T Consensus 265 ~~p~h~ 270 (290)
T PF04733_consen 265 SNPNHP 270 (290)
T ss_dssp HTTTSH
T ss_pred hCCCCh
Confidence 888644
No 104
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.85 E-value=7.7e-08 Score=79.24 Aligned_cols=121 Identities=10% Similarity=0.035 Sum_probs=78.9
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHchHhhCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHhCC-
Q 007400 405 RLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPN-QEHHACLIELLAQAGCSDQLMNQLEKMP- 482 (605)
Q Consensus 405 ~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~- 482 (605)
.++++.++ +.|+. +..+..++...|++++|...|+.+. ...|+ ...+..+..++.+.|++++|...|++..
T Consensus 14 ~~~~~al~--~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al---~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~ 86 (144)
T PRK15359 14 DILKQLLS--VDPET--VYASGYASWQEGDYSRAVIDFSWLV---MAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALM 86 (144)
T ss_pred HHHHHHHH--cCHHH--HHHHHHHHHHcCCHHHHHHHHHHHH---HcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 44555555 34443 3345566667777777777777766 34443 5666677777777777777777776652
Q ss_pred -CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 007400 483 -YEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYS 532 (605)
Q Consensus 483 -~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 532 (605)
.+.+...+..++.++...|++++|...|+++++..|+++..+...+.+..
T Consensus 87 l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~ 137 (144)
T PRK15359 87 LDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQI 137 (144)
T ss_pred cCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 23456667777777777777777777777777777777777766666554
No 105
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.82 E-value=4.1e-07 Score=79.32 Aligned_cols=145 Identities=14% Similarity=0.071 Sum_probs=110.4
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHchHhhCCCC-CHHHHHHHHHHHHhcCC
Q 007400 392 SALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIP-NQEHHACLIELLAQAGC 470 (605)
Q Consensus 392 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~ 470 (605)
..|...|+++.+....+.+.. |. ..+...++.+++...++... ...| +...|..|...|...|+
T Consensus 24 ~~Y~~~g~~~~v~~~~~~~~~----~~--------~~~~~~~~~~~~i~~l~~~L---~~~P~~~~~w~~Lg~~~~~~g~ 88 (198)
T PRK10370 24 GSYLLSPKWQAVRAEYQRLAD----PL--------HQFASQQTPEAQLQALQDKI---RANPQNSEQWALLGEYYLWRND 88 (198)
T ss_pred HHHHHcchHHHHHHHHHHHhC----cc--------ccccCchhHHHHHHHHHHHH---HHCCCCHHHHHHHHHHHHHCCC
Confidence 457788888876544433221 11 01223566777777777776 3344 47888899999999999
Q ss_pred hHHHHHHHHhCC--CCCCHHHHHHHHHHH-HhcCC--HHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHH
Q 007400 471 SDQLMNQLEKMP--YEHDSYLWNALHGVC-RIHGN--IDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQ 545 (605)
Q Consensus 471 ~~~A~~~~~~~~--~~~~~~~~~~l~~~~-~~~g~--~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 545 (605)
+++|...+++.. .+.+...+..++.++ ...|+ .++|.++++++++.+|++..++..++.++.+.|++++|+..|+
T Consensus 89 ~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~ 168 (198)
T PRK10370 89 YDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQ 168 (198)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHH
Confidence 999999998862 345677888888864 67677 5999999999999999999999999999999999999999999
Q ss_pred HHHhCC
Q 007400 546 LINERQ 551 (605)
Q Consensus 546 ~~~~~~ 551 (605)
++.+..
T Consensus 169 ~aL~l~ 174 (198)
T PRK10370 169 KVLDLN 174 (198)
T ss_pred HHHhhC
Confidence 997753
No 106
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.81 E-value=6.4e-06 Score=80.55 Aligned_cols=194 Identities=13% Similarity=0.072 Sum_probs=105.8
Q ss_pred HHHHHHhcccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCCC----CCc--chHHHHHHHHH
Q 007400 322 SCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNK----ENS--MLWNTMISALT 395 (605)
Q Consensus 322 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~--~~~~~l~~~~~ 395 (605)
.+...+...|++++|...+++..+.. +.+...+..+..++...|++++|...++..... ++. ..|..+...+.
T Consensus 119 ~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~ 197 (355)
T cd05804 119 MLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYL 197 (355)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHH
Confidence 44455566677777777777776655 444556666777777777777777777754421 121 23445667777
Q ss_pred HcCCHHHHHHHHHHHHHCCC-CCCHHHH-H--HHHHHHhccCcHHHHHHH--HHHchHhhCC-CCCHHHHHHHHHHHHhc
Q 007400 396 QHGYDEQAIRLFHDMVRSSV-KPDKITL-A--VILNACTHSGLVQEGLTY--FESMTHDLGI-IPNQEHHACLIELLAQA 468 (605)
Q Consensus 396 ~~g~~~~a~~~~~~m~~~~~-~p~~~~~-~--~l~~~~~~~g~~~~a~~~--~~~~~~~~~~-~p~~~~~~~l~~~~~~~ 468 (605)
..|++++|..++++...... .+..... . .++.-+...|....+.++ +......... ............++...
T Consensus 198 ~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 277 (355)
T cd05804 198 ERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGA 277 (355)
T ss_pred HCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcC
Confidence 78888888888877754321 1111111 1 222223333322222222 1111101000 11111222456667788
Q ss_pred CChHHHHHHHHhCC--CCC---C------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 007400 469 GCSDQLMNQLEKMP--YEH---D------SYLWNALHGVCRIHGNIDMGRKVVDQLIDQ 516 (605)
Q Consensus 469 g~~~~A~~~~~~~~--~~~---~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 516 (605)
|+.++|..+++.+. ... . .........++...|+.+.|.+.+..++..
T Consensus 278 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~ 336 (355)
T cd05804 278 GDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDD 336 (355)
T ss_pred CCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 88888888887652 011 1 122223344566889999999999988875
No 107
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.81 E-value=3.7e-05 Score=85.45 Aligned_cols=253 Identities=14% Similarity=0.104 Sum_probs=116.6
Q ss_pred HHHhcCChHHHHHHHhhcCC--C--Cc----chHHHHHHHHHhcCChHHHHHHHhhCCC-------C--ChhhHHHHHHH
Q 007400 229 AYAKCGELSDARRLFDETDA--R--DV----LTWTTMVSGYAKLGDMESASKLFNEMPE-------K--NPVSWTTLIAG 291 (605)
Q Consensus 229 ~~~~~g~~~~a~~~~~~~~~--~--~~----~~~~~li~~~~~~~~~~~A~~~~~~~~~-------~--~~~~~~~l~~~ 291 (605)
.+...|++++|...+++... + +. ...+.+...+...|++++|...+.+... + ...++..+...
T Consensus 461 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~ 540 (903)
T PRK04841 461 VAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEI 540 (903)
T ss_pred HHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHH
Confidence 34455555555555544322 1 11 1223333444555666665555554431 1 11233444555
Q ss_pred HHhCCChHHHHHHHHHHHH----CCCC--C-ChHHHHHHHHHHhcccchHHHHHHHHHHHHcC--CCC--ChhHHHHHHH
Q 007400 292 YTRNGLGQKALELFTRMMI----LRIR--P-NQHTFSSCLCACASIVSLKHGKQVHGFLIRTN--FRS--NTIVMSSLID 360 (605)
Q Consensus 292 ~~~~g~~~~a~~~~~~m~~----~g~~--p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~--~~~~~~~l~~ 360 (605)
+...|++++|...+++... .+.. + ....+..+...+...|++++|...+.+..... ..+ ....+..+..
T Consensus 541 ~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~ 620 (903)
T PRK04841 541 LFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAK 620 (903)
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHH
Confidence 5666666666666655443 1111 1 11223333444455566666666665554321 111 1223333455
Q ss_pred HHHhcCChHHHHHHHHhcC----CCCCcchHH-----HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHH
Q 007400 361 MYSKCGCLNDGRQVFDLTD----NKENSMLWN-----TMISALTQHGYDEQAIRLFHDMVRSSVKPDK---ITLAVILNA 428 (605)
Q Consensus 361 ~~~~~g~~~~A~~~~~~~~----~~~~~~~~~-----~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~---~~~~~l~~~ 428 (605)
.+...|+++.|.+.++... .......+. ..+..+...|+.+.|..++............ .....+..+
T Consensus 621 ~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~ 700 (903)
T PRK04841 621 ISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARA 700 (903)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHH
Confidence 5666666666666555432 110111110 1122334456666666665554331111110 113345555
Q ss_pred HhccCcHHHHHHHHHHchHh---hCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHhC
Q 007400 429 CTHSGLVQEGLTYFESMTHD---LGIIPN-QEHHACLIELLAQAGCSDQLMNQLEKM 481 (605)
Q Consensus 429 ~~~~g~~~~a~~~~~~~~~~---~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~ 481 (605)
+...|++++|...++++... .+..++ ..+...+..++.+.|+.++|...+.+.
T Consensus 701 ~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~A 757 (903)
T PRK04841 701 QILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEA 757 (903)
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 66666666666666665421 122222 334555566666667766666666554
No 108
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.81 E-value=1.1e-05 Score=82.19 Aligned_cols=176 Identities=11% Similarity=-0.011 Sum_probs=116.7
Q ss_pred hhHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCChhHHHHHhccCCCC---CchHHHHHHHHHHccCChHHHHHHHhh
Q 007400 68 LKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVK---NLFSYNNMLSGYANLGMMKHARNLFDN 144 (605)
Q Consensus 68 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~A~~~~~~ 144 (605)
...+...+-+.++.. +.-...|..|...|...-+...|...|+...+- +..++....+.|++..+++.|..+.-.
T Consensus 474 ~~~al~ali~alrld--~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~ 551 (1238)
T KOG1127|consen 474 SALALHALIRALRLD--VSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLR 551 (1238)
T ss_pred HHHHHHHHHHHHhcc--cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHH
Confidence 444555444444443 333336778888888888888888888887753 456778888889999999988888443
Q ss_pred cCCCCc-----eeHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCC
Q 007400 145 MAERDV-----VSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSN 219 (605)
Q Consensus 145 ~~~~~~-----~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 219 (605)
..+.+. ..|-...-.|...+++..++.-|+...+..+ -|...|..+..+|.+.|.+..|.++|.+.....+. +
T Consensus 552 ~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dP-kD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~-s 629 (1238)
T KOG1127|consen 552 AAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDP-KDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPL-S 629 (1238)
T ss_pred HhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCc-hhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcH-h
Confidence 333211 2233344456677888888888888877332 36667888888999999999999988877654322 1
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHhhcC
Q 007400 220 VVISSSIVDAYAKCGELSDARRLFDETD 247 (605)
Q Consensus 220 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 247 (605)
...--......+..|.+.+|...+..+.
T Consensus 630 ~y~~fk~A~~ecd~GkYkeald~l~~ii 657 (1238)
T KOG1127|consen 630 KYGRFKEAVMECDNGKYKEALDALGLII 657 (1238)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 1111223334566788888887776654
No 109
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.80 E-value=1.1e-07 Score=78.27 Aligned_cols=107 Identities=8% Similarity=-0.031 Sum_probs=92.7
Q ss_pred HHHHHchHhhCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 007400 440 TYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMP--YEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQN 517 (605)
Q Consensus 440 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 517 (605)
.++++.. .+.|+. +..+...+...|++++|...|+... .+.+...|..++.++...|++++|...|+++++++
T Consensus 14 ~~~~~al---~~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~ 88 (144)
T PRK15359 14 DILKQLL---SVDPET--VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD 88 (144)
T ss_pred HHHHHHH---HcCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 4555555 445553 5567888999999999999999862 34578899999999999999999999999999999
Q ss_pred CCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 007400 518 PQSSATHGLLSSIYSALGKGRLVEKVRQLINERQ 551 (605)
Q Consensus 518 p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 551 (605)
|+++..+..++.++...|++++|+..++...+..
T Consensus 89 p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~ 122 (144)
T PRK15359 89 ASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMS 122 (144)
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999987753
No 110
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.78 E-value=6.4e-07 Score=85.82 Aligned_cols=246 Identities=15% Similarity=0.102 Sum_probs=173.5
Q ss_pred HHHhCCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhcccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHH
Q 007400 291 GYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLND 370 (605)
Q Consensus 291 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 370 (605)
-+.+.|+..+|.-.|+...+.. +-+...|..|.......++-..|+..+.+..+.. +.+..+...|.-.|...|.-..
T Consensus 294 ~lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~~ 371 (579)
T KOG1125|consen 294 NLMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQNQ 371 (579)
T ss_pred HHHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHHH
Confidence 4566777777777777766653 3455567777777777777777777777777765 5566777777777888888888
Q ss_pred HHHHHHhcCC-CC----------CcchHHHHHHHHHHcCCHHHHHHHHHHHH-HCCCCCCHHHHHHHHHHHhccCcHHHH
Q 007400 371 GRQVFDLTDN-KE----------NSMLWNTMISALTQHGYDEQAIRLFHDMV-RSSVKPDKITLAVILNACTHSGLVQEG 438 (605)
Q Consensus 371 A~~~~~~~~~-~~----------~~~~~~~l~~~~~~~g~~~~a~~~~~~m~-~~~~~p~~~~~~~l~~~~~~~g~~~~a 438 (605)
|...++.... +| +...-.. ..+..........++|-++. ..+..+|+.....|.-.|.-.|++++|
T Consensus 372 Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdra 449 (579)
T KOG1125|consen 372 ALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRA 449 (579)
T ss_pred HHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHH
Confidence 8877775321 10 0000000 11111122334445555544 444447888888888889999999999
Q ss_pred HHHHHHchHhhCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 007400 439 LTYFESMTHDLGIIPN-QEHHACLIELLAQAGCSDQLMNQLEKM-PYEHD-SYLWNALHGVCRIHGNIDMGRKVVDQLID 515 (605)
Q Consensus 439 ~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 515 (605)
...|+.+. .+.|+ ..+|+.|+..++...+.++|++.|.++ ..+|. +.++..|+..|...|.+++|.+.|-.++.
T Consensus 450 iDcf~~AL---~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~ 526 (579)
T KOG1125|consen 450 VDCFEAAL---QVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALS 526 (579)
T ss_pred HHHHHHHH---hcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 99999998 67887 679999999999999999999999986 45665 66888899999999999999999999998
Q ss_pred cCCC-----C-----CchHHHHHHHHHhcCCchHHHHH
Q 007400 516 QNPQ-----S-----SATHGLLSSIYSALGKGRLVEKV 543 (605)
Q Consensus 516 ~~p~-----~-----~~~~~~l~~~~~~~g~~~~a~~~ 543 (605)
+.+. . ..+|..|=.++...++.|-+.++
T Consensus 527 mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a 564 (579)
T KOG1125|consen 527 MQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEA 564 (579)
T ss_pred hhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHh
Confidence 7443 1 24666676777777777655444
No 111
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.77 E-value=1.1e-06 Score=92.35 Aligned_cols=201 Identities=10% Similarity=0.140 Sum_probs=164.2
Q ss_pred CCChhHHHHHHHHHHhcCChHHHHHHHHhcCCCC-------CcchHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH
Q 007400 349 RSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKE-------NSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKIT 421 (605)
Q Consensus 349 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-------~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~ 421 (605)
|.+...|-..|......++.+.|++++++....- -...|.+++.....-|.-+...++|+++.+. .-....
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~V 1532 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYTV 1532 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHHH
Confidence 5566778888888899999999999988755331 2346888888888888888999999999883 222347
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHchHhhCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC---CHHHHHHHHHHH
Q 007400 422 LAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKM-PYEH---DSYLWNALHGVC 497 (605)
Q Consensus 422 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~---~~~~~~~l~~~~ 497 (605)
|..|...|.+.+.+++|.++++.|.++.+ -....|..++..+.++.+-++|..++++. ..-| -.......+..-
T Consensus 1533 ~~~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLE 1610 (1710)
T KOG1070|consen 1533 HLKLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLE 1610 (1710)
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHH
Confidence 88889999999999999999999997666 45678888999999999999999999875 2222 344556667777
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCCCc
Q 007400 498 RIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFK 553 (605)
Q Consensus 498 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 553 (605)
.+.|+.++++.+|+..+...|.....|..+++.-.+.|+.+.++.+|+++...++.
T Consensus 1611 Fk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~ 1666 (1710)
T KOG1070|consen 1611 FKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLS 1666 (1710)
T ss_pred hhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCC
Confidence 88999999999999999999999999999999999999999999999999887654
No 112
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.72 E-value=5.4e-07 Score=72.59 Aligned_cols=96 Identities=7% Similarity=-0.043 Sum_probs=85.9
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 007400 455 QEHHACLIELLAQAGCSDQLMNQLEKMP--YEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYS 532 (605)
Q Consensus 455 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 532 (605)
.+....+...+...|++++|..+|+-.. .+.+...|..|+.+|...|++++|+..|.++..++|+++.++..++.++.
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L 114 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYL 114 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence 4566677778889999999999998763 34578889999999999999999999999999999999999999999999
Q ss_pred hcCCchHHHHHHHHHHhC
Q 007400 533 ALGKGRLVEKVRQLINER 550 (605)
Q Consensus 533 ~~g~~~~a~~~~~~~~~~ 550 (605)
..|+.+.|.+.|+.....
T Consensus 115 ~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 115 ACDNVCYAIKALKAVVRI 132 (157)
T ss_pred HcCCHHHHHHHHHHHHHH
Confidence 999999999999988664
No 113
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.71 E-value=1.3e-06 Score=90.43 Aligned_cols=136 Identities=11% Similarity=0.086 Sum_probs=113.1
Q ss_pred CcchHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCcHHHHHHHHHHchHhhCCCCC-HHHHHH
Q 007400 383 NSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKI-TLAVILNACTHSGLVQEGLTYFESMTHDLGIIPN-QEHHAC 460 (605)
Q Consensus 383 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~ 460 (605)
++..+..|.....+.|+.++|..+++...+ +.|+.. ....++.++.+.+++++|....++.. ...|+ ......
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~--~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l---~~~p~~~~~~~~ 159 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQ--RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYF---SGGSSSAREILL 159 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHh---hcCCCCHHHHHH
Confidence 577888888899999999999999999998 678654 77888888999999999999999988 55676 667788
Q ss_pred HHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCch
Q 007400 461 LIELLAQAGCSDQLMNQLEKMP--YEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSAT 523 (605)
Q Consensus 461 l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 523 (605)
+..++.+.|++++|.++|++.. .+.+..++..++.++...|+.++|...|+++++...+-...
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~ 224 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARK 224 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHH
Confidence 8889999999999999999873 33447888889999999999999999999999985433333
No 114
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.68 E-value=0.00039 Score=66.66 Aligned_cols=174 Identities=13% Similarity=0.122 Sum_probs=119.1
Q ss_pred ChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhcccchHHHHHHHHHHHHcCCCC-ChhHHHHHHHHHHhcCChHHHHHHH
Q 007400 297 LGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRS-NTIVMSSLIDMYSKCGCLNDGRQVF 375 (605)
Q Consensus 297 ~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~ 375 (605)
..+.....+++++..-..--..+|...+....+...+..|+.+|.++.+.+..+ ++.+.++++..||. ++.+.|.++|
T Consensus 346 ~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIF 424 (656)
T KOG1914|consen 346 KEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIF 424 (656)
T ss_pred hhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHH
Confidence 366667777777653322233466777777788888899999999998877665 77778888887775 7788889998
Q ss_pred HhcC-CCCCcchH-HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHhccCcHHHHHHHHHHchHhhC-
Q 007400 376 DLTD-NKENSMLW-NTMISALTQHGYDEQAIRLFHDMVRSSVKPDK--ITLAVILNACTHSGLVQEGLTYFESMTHDLG- 450 (605)
Q Consensus 376 ~~~~-~~~~~~~~-~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~- 450 (605)
+.-. .-+|...| ...+..+...|+-..+..+|++.+..++.|+. ..|..++.--..-|+...+..+-++......
T Consensus 425 eLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~ 504 (656)
T KOG1914|consen 425 ELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPA 504 (656)
T ss_pred HHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcch
Confidence 8533 33455443 45667777888888899999998888666654 5888888888888888888888777653222
Q ss_pred -CCCCHHHHHHHHHHHHhcCCh
Q 007400 451 -IIPNQEHHACLIELLAQAGCS 471 (605)
Q Consensus 451 -~~p~~~~~~~l~~~~~~~g~~ 471 (605)
..+....-..+++.|.-.+.+
T Consensus 505 ~qe~~~~~~~~~v~RY~~~d~~ 526 (656)
T KOG1914|consen 505 DQEYEGNETALFVDRYGILDLY 526 (656)
T ss_pred hhcCCCChHHHHHHHHhhcccc
Confidence 222222333344445444443
No 115
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.67 E-value=1.3e-06 Score=85.95 Aligned_cols=221 Identities=12% Similarity=-0.011 Sum_probs=166.7
Q ss_pred CCChHHHHHHHHHHhcccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcC-CCCCcchHHHHHH
Q 007400 314 RPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTD-NKENSMLWNTMIS 392 (605)
Q Consensus 314 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~l~~ 392 (605)
+|--..-..+...+.+.|-...|..++++.. .+..++.+|...|+..+|..+..... .+|++..|..+.+
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek~~d~~lyc~LGD 465 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEKDPDPRLYCLLGD 465 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcCCCcchhHHHhhh
Confidence 3333344455666777788888888877653 45567888888888888888776544 4678888888887
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHchHhhCCCCC-HHHHHHHHHHHHhcCCh
Q 007400 393 ALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPN-QEHHACLIELLAQAGCS 471 (605)
Q Consensus 393 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~ 471 (605)
......-+++|.++.+..... .-..+.......++++++...|+.-. .+.|- ..+|..+.-+..+.+++
T Consensus 466 v~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl---~~nplq~~~wf~~G~~ALqlek~ 535 (777)
T KOG1128|consen 466 VLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSL---EINPLQLGTWFGLGCAALQLEKE 535 (777)
T ss_pred hccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHh---hcCccchhHHHhccHHHHHHhhh
Confidence 777766777787777654332 11222222344688899999888766 34443 67888888889999999
Q ss_pred HHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 007400 472 DQLMNQLEKM-PYEH-DSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINE 549 (605)
Q Consensus 472 ~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 549 (605)
..|.+.|... ...| +...|+.+..+|.+.|+-.+|...++++++.+-++..+|.....+..+.|.|++|.+.++.+..
T Consensus 536 q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 536 QAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLD 615 (777)
T ss_pred HHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence 9999999876 2344 5779999999999999999999999999999888899999999999999999999999998876
Q ss_pred CCCc
Q 007400 550 RQFK 553 (605)
Q Consensus 550 ~~~~ 553 (605)
....
T Consensus 616 ~~~~ 619 (777)
T KOG1128|consen 616 LRKK 619 (777)
T ss_pred hhhh
Confidence 5443
No 116
>PLN02789 farnesyltranstransferase
Probab=98.66 E-value=9.8e-06 Score=76.04 Aligned_cols=210 Identities=10% Similarity=0.056 Sum_probs=128.6
Q ss_pred chHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcC-ChHHHHHHHHhcCCC--CCcchHHHHHHHHHHcCCH--HHHHHH
Q 007400 332 SLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCG-CLNDGRQVFDLTDNK--ENSMLWNTMISALTQHGYD--EQAIRL 406 (605)
Q Consensus 332 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~--~~a~~~ 406 (605)
..++|.....++++.+ +-+..+|+....++...| ++++++..++.+... .+..+|+-....+.+.|+. ++++.+
T Consensus 52 ~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~ 130 (320)
T PLN02789 52 RSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEF 130 (320)
T ss_pred CCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHH
Confidence 3344444444444433 223333443333444444 356666666554321 1444555544444455542 566777
Q ss_pred HHHHHHCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHchHhhCCCCC-HHHHHHHHHHHHhc---CCh----HHHHHH
Q 007400 407 FHDMVRSSVKP-DKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPN-QEHHACLIELLAQA---GCS----DQLMNQ 477 (605)
Q Consensus 407 ~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~---g~~----~~A~~~ 477 (605)
++++++ ..| |..+|.....++...|+++++++.++++++ ..|+ ...|+....++.+. |.. +++++.
T Consensus 131 ~~kal~--~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~---~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y 205 (320)
T PLN02789 131 TRKILS--LDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLE---EDVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKY 205 (320)
T ss_pred HHHHHH--hCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHH---HCCCchhHHHHHHHHHHhccccccccccHHHHHHH
Confidence 777777 344 556777777777778888888888888872 2333 55566555555444 222 355555
Q ss_pred HHhC-C-CCCCHHHHHHHHHHHHhc----CCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcC----------------
Q 007400 478 LEKM-P-YEHDSYLWNALHGVCRIH----GNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALG---------------- 535 (605)
Q Consensus 478 ~~~~-~-~~~~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g---------------- 535 (605)
..++ . .+.|...|+.+.+.+... ++..+|.+.+.++++..|.++.++..|+++|....
T Consensus 206 ~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~ 285 (320)
T PLN02789 206 TIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEGLQPTAEFRDTVDTLAEE 285 (320)
T ss_pred HHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhhhccchhhhhhhhccccc
Confidence 5443 2 345677888888888763 45577999999998889989999999999998643
Q ss_pred --CchHHHHHHHHH
Q 007400 536 --KGRLVEKVRQLI 547 (605)
Q Consensus 536 --~~~~a~~~~~~~ 547 (605)
..++|..+++.+
T Consensus 286 ~~~~~~a~~~~~~l 299 (320)
T PLN02789 286 LSDSTLAQAVCSEL 299 (320)
T ss_pred cccHHHHHHHHHHH
Confidence 236688888877
No 117
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.66 E-value=3.5e-06 Score=73.01 Aligned_cols=155 Identities=14% Similarity=0.105 Sum_probs=109.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHchHhhCCCCCHHHHHHHHHHHHh
Q 007400 388 NTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQ 467 (605)
Q Consensus 388 ~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 467 (605)
..+...+...|+-+....+....... ..-|.......+....+.|++..|...++++. . .-++|...++.+.-+|.+
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~-~-l~p~d~~~~~~lgaaldq 146 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAA-R-LAPTDWEAWNLLGAALDQ 146 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHh-c-cCCCChhhhhHHHHHHHH
Confidence 45556666677777776666664432 12244455557777777788888888887776 2 334457778888888888
Q ss_pred cCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHH
Q 007400 468 AGCSDQLMNQLEKM-P-YEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQ 545 (605)
Q Consensus 468 ~g~~~~A~~~~~~~-~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 545 (605)
.|+++.|..-|.+. . ...++...+.++..+.-.|+.+.|+.++..+....+.+..+-..|+.+....|++++|..+..
T Consensus 147 ~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 147 LGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAV 226 (257)
T ss_pred ccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhcc
Confidence 88888887777664 2 234566777787788888888888888888887777777888888888888888888877664
No 118
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.66 E-value=3.7e-06 Score=73.35 Aligned_cols=154 Identities=12% Similarity=0.113 Sum_probs=117.1
Q ss_pred HHHHHhcCChHHHHHHHHhcCCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHH
Q 007400 359 IDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEG 438 (605)
Q Consensus 359 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a 438 (605)
+-.|...|+++.+....+.+..+.. .+...++.+++...+++.++.+ +.|...|..+...|...|+++.|
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~~~~---------~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A 92 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLADPLH---------QFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNA 92 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhCccc---------cccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHH
Confidence 4467788888776555443332211 1223567788888888888842 33667999999999999999999
Q ss_pred HHHHHHchHhhCCCCC-HHHHHHHHHHH-HhcCC--hHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 007400 439 LTYFESMTHDLGIIPN-QEHHACLIELL-AQAGC--SDQLMNQLEKMP--YEHDSYLWNALHGVCRIHGNIDMGRKVVDQ 512 (605)
Q Consensus 439 ~~~~~~~~~~~~~~p~-~~~~~~l~~~~-~~~g~--~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 512 (605)
...|++.. .+.|+ ...+..+..++ .+.|+ .++|.+++++.. .+.+..++..++..+...|++++|+..|++
T Consensus 93 ~~a~~~Al---~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~ 169 (198)
T PRK10370 93 LLAYRQAL---QLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQK 169 (198)
T ss_pred HHHHHHHH---HhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99999998 55665 77888888864 67777 599999999863 345778889999999999999999999999
Q ss_pred HHhcCCCCCchHH
Q 007400 513 LIDQNPQSSATHG 525 (605)
Q Consensus 513 ~~~~~p~~~~~~~ 525 (605)
+++..|.+..-+.
T Consensus 170 aL~l~~~~~~r~~ 182 (198)
T PRK10370 170 VLDLNSPRVNRTQ 182 (198)
T ss_pred HHhhCCCCccHHH
Confidence 9999876655443
No 119
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.64 E-value=4.3e-06 Score=72.49 Aligned_cols=135 Identities=16% Similarity=0.129 Sum_probs=114.3
Q ss_pred CCCCHHHHHHHHHHHhccCcHHHHHHHHHHchHhhCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhC--CCCCCHHHHHH
Q 007400 415 VKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKM--PYEHDSYLWNA 492 (605)
Q Consensus 415 ~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~ 492 (605)
..|+......+..++...|+-+....+..... . ....+......+++...+.|++..|...+.+. ..++|...|+.
T Consensus 62 ~~p~d~~i~~~a~a~~~~G~a~~~l~~~~~~~-~-~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~ 139 (257)
T COG5010 62 RNPEDLSIAKLATALYLRGDADSSLAVLQKSA-I-AYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNL 139 (257)
T ss_pred cCcchHHHHHHHHHHHhcccccchHHHHhhhh-c-cCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhH
Confidence 35643333667777888888888888887764 1 33344667777999999999999999999997 35789999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 007400 493 LHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQ 551 (605)
Q Consensus 493 l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 551 (605)
++.+|.+.|+++.|...|.+++++.|.++.....++..|.-.|++++|..++......+
T Consensus 140 lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~ 198 (257)
T COG5010 140 LGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP 198 (257)
T ss_pred HHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999886654
No 120
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.61 E-value=0.0011 Score=67.79 Aligned_cols=511 Identities=11% Similarity=0.046 Sum_probs=273.0
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHh--hhcCChhHHHHHHHHHHHhCCCCCchhhHHHHHHHHH
Q 007400 22 QSFLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQC--AESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYF 99 (605)
Q Consensus 22 ~~~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 99 (605)
.-+...+..+++..|+.-.+++.+.. |+. .|..++.++ .+.|..++|..+++.....++. +.. +...+-.+|.
T Consensus 14 rpi~d~ld~~qfkkal~~~~kllkk~--Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~-tLq~l~~~y~ 88 (932)
T KOG2053|consen 14 RPIYDLLDSSQFKKALAKLGKLLKKH--PNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDL-TLQFLQNVYR 88 (932)
T ss_pred hHHHHHhhhHHHHHHHHHHHHHHHHC--CCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chH-HHHHHHHHHH
Confidence 44456677899999999999988754 443 366666665 4789999999998888766655 444 8999999999
Q ss_pred hcCChhHHHHHhccCCC--CCchHHHHHHHHHHccCCh----HHHHHHHhhcCCCCceeHHHHHHHHHhc-CCh------
Q 007400 100 KCGSDVDARKVFDKIPV--KNLFSYNNMLSGYANLGMM----KHARNLFDNMAERDVVSWNTMIIGYAKS-GAV------ 166 (605)
Q Consensus 100 ~~g~~~~a~~~~~~~~~--~~~~~~~~li~~~~~~~~~----~~A~~~~~~~~~~~~~~~~~li~~~~~~-~~~------ 166 (605)
+.|..++|..+|++..+ |+..-...+..+|.+.+.+ ..|.+++...++.--..|+. ++...+. ...
T Consensus 89 d~~~~d~~~~~Ye~~~~~~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV-~Slilqs~~~~~~~~~~ 167 (932)
T KOG2053|consen 89 DLGKLDEAVHLYERANQKYPSEELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSV-ISLILQSIFSENELLDP 167 (932)
T ss_pred HHhhhhHHHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHH-HHHHHHhccCCcccccc
Confidence 99999999999999986 4444444555666666655 45777777666543334433 3333222 122
Q ss_pred ---HHHHHHHHHHHhCC-CCCChhhHHHHHHHHhccCChHHHHHHHHHH-HHhCCCCChhHHHHHHHHHHhcCChHHHHH
Q 007400 167 ---EEGLKFYKVLRRFS-ISCNEFSFAGILTICVKLEELKLTRQVHGQV-LVTGFLSNVVISSSIVDAYAKCGELSDARR 241 (605)
Q Consensus 167 ---~~a~~~~~~m~~~~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 241 (605)
.-|...++.+.+.+ ---+..-...-+..+...+++++|..++.-- .+.-..-+...-+.-+..+...+++.+..+
T Consensus 168 i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~ 247 (932)
T KOG2053|consen 168 ILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFE 247 (932)
T ss_pred hhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHH
Confidence 23444555555443 1122222333344556788899999998433 333333445555667788888999988888
Q ss_pred HHhhcCCCCcchHHHHHHH----------------HHhcCChHHHHHHHhhCCCC-ChhhHHHHHHHHH---hCCChHHH
Q 007400 242 LFDETDARDVLTWTTMVSG----------------YAKLGDMESASKLFNEMPEK-NPVSWTTLIAGYT---RNGLGQKA 301 (605)
Q Consensus 242 ~~~~~~~~~~~~~~~li~~----------------~~~~~~~~~A~~~~~~~~~~-~~~~~~~l~~~~~---~~g~~~~a 301 (605)
+..++...+..-|...+.. +...+..+...+...+.... ....|-+-+.... .-|+.+++
T Consensus 248 l~~~Ll~k~~Ddy~~~~~sv~klLe~~~~~~a~~~~s~~~~l~~~~ek~~~~i~~~~Rgp~LA~lel~kr~~~~gd~ee~ 327 (932)
T KOG2053|consen 248 LSSRLLEKGNDDYKIYTDSVFKLLELLNKEPAEAAHSLSKSLDECIEKAQKNIGSKSRGPYLARLELDKRYKLIGDSEEM 327 (932)
T ss_pred HHHHHHHhCCcchHHHHHHHHHHHHhcccccchhhhhhhhhHHHHHHHHHHhhcccccCcHHHHHHHHHHhcccCChHHH
Confidence 8777766533224433332 22223333333333333221 2223333333333 33677766
Q ss_pred HHHHHHHHHCCCCCChHHHHHHHHHHhcccchHHHHHHHHHHHHcCCCC--Ch---hHHHHHHHHHHhcCCh-----HHH
Q 007400 302 LELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRS--NT---IVMSSLIDMYSKCGCL-----NDG 371 (605)
Q Consensus 302 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~~---~~~~~l~~~~~~~g~~-----~~A 371 (605)
...|-+- -|..|-. ..=+..|...=..+.-..++.......... +. ..+.+.+..-.-.|.+ +.-
T Consensus 328 ~~~y~~k--fg~kpcc---~~Dl~~yl~~l~~~q~~~l~~~l~~~~~~~s~~~k~l~~h~c~l~~~rl~G~~~~l~ad~i 402 (932)
T KOG2053|consen 328 LSYYFKK--FGDKPCC---AIDLNHYLGHLNIDQLKSLMSKLVLADDDSSGDEKVLQQHLCVLLLLRLLGLYEKLPADSI 402 (932)
T ss_pred HHHHHHH--hCCCcHh---HhhHHHhhccCCHHHHHHHHHHhhccCCcchhhHHHHHHHHHHHHHHHHhhccccCChHHH
Confidence 5444321 2222211 111111111111122222222222111000 00 0011122222222211 111
Q ss_pred HHHHHh----cCC------C--CCcc---------hHHHHHHHHHHcCCHH---HHHHHHHHHHHCCCCC-CHHHHHHHH
Q 007400 372 RQVFDL----TDN------K--ENSM---------LWNTMISALTQHGYDE---QAIRLFHDMVRSSVKP-DKITLAVIL 426 (605)
Q Consensus 372 ~~~~~~----~~~------~--~~~~---------~~~~l~~~~~~~g~~~---~a~~~~~~m~~~~~~p-~~~~~~~l~ 426 (605)
...+.+ ... . |+.. +-+.|+..+.+.++.. +|+-+++.-... .| |..+-..++
T Consensus 403 ~a~~~kl~~~ye~gls~~K~ll~TE~~~g~~~llLav~~Lid~~rktnd~~~l~eaI~LLE~glt~--s~hnf~~KLlLi 480 (932)
T KOG2053|consen 403 LAYVRKLKLTYEKGLSLSKDLLPTEYSFGDELLLLAVNHLIDLWRKTNDLTDLFEAITLLENGLTK--SPHNFQTKLLLI 480 (932)
T ss_pred HHHHHHHHHHHhccccccccccccccccHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhc--CCccHHHHHHHH
Confidence 222211 110 0 1111 3456777788887766 455555555553 33 556777788
Q ss_pred HHHhccCcHHHHHHHHHHchHhhCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhCC---CCCCHHHHHHHHHHHHhcCCH
Q 007400 427 NACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMP---YEHDSYLWNALHGVCRIHGNI 503 (605)
Q Consensus 427 ~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~ 503 (605)
+.|.-.|-...|...|+.+.-+ .+..|...| .+...+...|++..+...+.... ...-..+-..++.+| +.|.+
T Consensus 481 riY~~lGa~p~a~~~y~tLdIK-~IQ~DTlgh-~~~~~~~t~g~~~~~s~~~~~~lkfy~~~~kE~~eyI~~AY-r~g~y 557 (932)
T KOG2053|consen 481 RIYSYLGAFPDAYELYKTLDIK-NIQTDTLGH-LIFRRAETSGRSSFASNTFNEHLKFYDSSLKETPEYIALAY-RRGAY 557 (932)
T ss_pred HHHHHhcCChhHHHHHHhcchH-HhhhccchH-HHHHHHHhcccchhHHHHHHHHHHHHhhhhhhhHHHHHHHH-HcCch
Confidence 8898889999999999888633 666664433 24455667778887777776542 011122222333343 55666
Q ss_pred HHHHHHHHHHHhcCC----CCCchHHHHHHHHHhcCCchHHHHHHHHHH
Q 007400 504 DMGRKVVDQLIDQNP----QSSATHGLLSSIYSALGKGRLVEKVRQLIN 548 (605)
Q Consensus 504 ~~A~~~~~~~~~~~p----~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 548 (605)
.+-.++..-=-++.- .-..+-....+.+...++.++-...+..+.
T Consensus 558 SkI~em~~fr~rL~~S~q~~a~~VE~~~l~ll~~~~~~~q~~~~~~~~~ 606 (932)
T KOG2053|consen 558 SKIPEMLAFRDRLMHSLQKWACRVENLQLSLLCNADRGTQLLKLLESMK 606 (932)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHhccc
Confidence 655544322112211 112233356666677777777777776554
No 121
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.58 E-value=2.7e-06 Score=83.83 Aligned_cols=190 Identities=12% Similarity=0.132 Sum_probs=160.6
Q ss_pred CCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 007400 347 NFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVIL 426 (605)
Q Consensus 347 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~ 426 (605)
+++|-...-..+...+...|-...|..+|+++ ..|.-.|.+|...|+..+|..+..+..+ -+|++..|..++
T Consensus 393 ~lpp~Wq~q~~laell~slGitksAl~I~Erl------emw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LG 464 (777)
T KOG1128|consen 393 HLPPIWQLQRLLAELLLSLGITKSALVIFERL------EMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLG 464 (777)
T ss_pred CCCCcchHHHHHHHHHHHcchHHHHHHHHHhH------HHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhh
Confidence 34566666778889999999999999999954 4567788899999999999999998888 478999999999
Q ss_pred HHHhccCcHHHHHHHHHHchHhhCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHH
Q 007400 427 NACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKM-PY-EHDSYLWNALHGVCRIHGNID 504 (605)
Q Consensus 427 ~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~~~~~~~~~l~~~~~~~g~~~ 504 (605)
+......-++.|.++.+....+ .-..+.....+.+++.++.+.++.- .. +....+|..++.+..+.+++.
T Consensus 465 Dv~~d~s~yEkawElsn~~sar--------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q 536 (777)
T KOG1128|consen 465 DVLHDPSLYEKAWELSNYISAR--------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQ 536 (777)
T ss_pred hhccChHHHHHHHHHhhhhhHH--------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhH
Confidence 9988888899999998876522 2223334445689999999999874 33 346789999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCCC
Q 007400 505 MGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQF 552 (605)
Q Consensus 505 ~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 552 (605)
.|...|...+.++|++...|+.+..+|.+.|+..+|...+++..+.+.
T Consensus 537 ~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~ 584 (777)
T KOG1128|consen 537 AAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNY 584 (777)
T ss_pred HHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCC
Confidence 999999999999999999999999999999999999999999988763
No 122
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.58 E-value=1e-06 Score=72.40 Aligned_cols=101 Identities=18% Similarity=0.169 Sum_probs=78.5
Q ss_pred CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHH
Q 007400 450 GIIPN-QEHHACLIELLAQAGCSDQLMNQLEKMP--YEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGL 526 (605)
Q Consensus 450 ~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 526 (605)
...|+ ......++..+...|++++|.+.+++.. .+.+...|..++..+...|++++|...++++++..|+++..+..
T Consensus 11 ~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~ 90 (135)
T TIGR02552 11 GLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFH 90 (135)
T ss_pred cCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHH
Confidence 34454 4455666777777888888888777752 24467777788888888888888888888888888888888888
Q ss_pred HHHHHHhcCCchHHHHHHHHHHhC
Q 007400 527 LSSIYSALGKGRLVEKVRQLINER 550 (605)
Q Consensus 527 l~~~~~~~g~~~~a~~~~~~~~~~ 550 (605)
++.+|...|++++|...++...+.
T Consensus 91 la~~~~~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 91 AAECLLALGEPESALKALDLAIEI 114 (135)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh
Confidence 888888889988888888877764
No 123
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.55 E-value=4.7e-06 Score=75.98 Aligned_cols=183 Identities=10% Similarity=0.017 Sum_probs=129.3
Q ss_pred CCChHHHHHHHHHHhcccchHHHHHHHHHHHHcCCCCCh---hHHHHHHHHHHhcCChHHHHHHHHhcCCC-CC-cc---
Q 007400 314 RPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNT---IVMSSLIDMYSKCGCLNDGRQVFDLTDNK-EN-SM--- 385 (605)
Q Consensus 314 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~-~~--- 385 (605)
......+..+...+...|+++.|...++.+.+.. +.+. ..+..+..++...|++++|...++.+... |+ ..
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 108 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADY 108 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHH
Confidence 3445677778888999999999999999998865 2222 46677889999999999999999987532 32 22
Q ss_pred hHHHHHHHHHHc--------CCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCcHHHHHHHHHHchHhhCCCCCHH
Q 007400 386 LWNTMISALTQH--------GYDEQAIRLFHDMVRSSVKPDKI-TLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQE 456 (605)
Q Consensus 386 ~~~~l~~~~~~~--------g~~~~a~~~~~~m~~~~~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~ 456 (605)
++..+..++... |+.++|.+.++++... .|+.. ....+..... ... ... .
T Consensus 109 a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~~----~~~------~~~---------~ 167 (235)
T TIGR03302 109 AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMDY----LRN------RLA---------G 167 (235)
T ss_pred HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHHH----HHH------HHH---------H
Confidence 455566666654 7889999999999984 56543 2222211100 000 000 1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhCC----CC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 007400 457 HHACLIELLAQAGCSDQLMNQLEKMP----YE-HDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNP 518 (605)
Q Consensus 457 ~~~~l~~~~~~~g~~~~A~~~~~~~~----~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 518 (605)
....+...|.+.|++++|...+++.. .. .....+..++.++...|++++|..+++.+....|
T Consensus 168 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 168 KELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 12256677889999999999888762 12 2356888899999999999999999988877666
No 124
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.55 E-value=2.7e-05 Score=67.04 Aligned_cols=175 Identities=15% Similarity=0.166 Sum_probs=123.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhcCCC-CCcchHHH-HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 007400 354 VMSSLIDMYSKCGCLNDGRQVFDLTDNK-ENSMLWNT-MISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTH 431 (605)
Q Consensus 354 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~-l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 431 (605)
+|..++-+....|+.+.|..+++.+..+ |.+.-... -.-.+-..|++++|+++++.+++.+ +.|..++..-+...-.
T Consensus 54 l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka 132 (289)
T KOG3060|consen 54 LYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKA 132 (289)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHH
Confidence 3445555666677777777777765543 22221111 1223556789999999999998864 3355677766666667
Q ss_pred cCcHHHHHHHHHHchHhhCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhCC-C-CCCHHHHHHHHHHHHhcC---CHHHH
Q 007400 432 SGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMP-Y-EHDSYLWNALHGVCRIHG---NIDMG 506 (605)
Q Consensus 432 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~-~~~~~~~~~l~~~~~~~g---~~~~A 506 (605)
.|+.-+|++-+.... + .+.-|.+.|..+...|...|++++|.-.++++. . +.++..+..++..+.-.| +.+.|
T Consensus 133 ~GK~l~aIk~ln~YL-~-~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~a 210 (289)
T KOG3060|consen 133 QGKNLEAIKELNEYL-D-KFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELA 210 (289)
T ss_pred cCCcHHHHHHHHHHH-H-HhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHH
Confidence 777778888887777 3 567789999999999999999999999999873 3 345666666776655443 78899
Q ss_pred HHHHHHHHhcCCCCCchHHHHHHHH
Q 007400 507 RKVVDQLIDQNPQSSATHGLLSSIY 531 (605)
Q Consensus 507 ~~~~~~~~~~~p~~~~~~~~l~~~~ 531 (605)
+++|.+++++.|.+...+..+..++
T Consensus 211 rkyy~~alkl~~~~~ral~GI~lc~ 235 (289)
T KOG3060|consen 211 RKYYERALKLNPKNLRALFGIYLCG 235 (289)
T ss_pred HHHHHHHHHhChHhHHHHHHHHHHH
Confidence 9999999999997666666554443
No 125
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.52 E-value=2.1e-05 Score=81.51 Aligned_cols=143 Identities=8% Similarity=0.028 Sum_probs=115.5
Q ss_pred CCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCC-CC-CcchHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHH
Q 007400 347 NFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDN-KE-NSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPD-KITLA 423 (605)
Q Consensus 347 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~ 423 (605)
..+.+...+..|.....+.|.+++|..+++.+.. .| +...+..++..+.+.+++++|+..+++... ..|+ .....
T Consensus 81 ~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~--~~p~~~~~~~ 158 (694)
T PRK15179 81 RYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS--GGSSSAREIL 158 (694)
T ss_pred hccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh--cCCCCHHHHH
Confidence 3466788889999999999999999999997663 34 456778888899999999999999999998 4665 45777
Q ss_pred HHHHHHhccCcHHHHHHHHHHchHhhCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHH
Q 007400 424 VILNACTHSGLVQEGLTYFESMTHDLGIIPN-QEHHACLIELLAQAGCSDQLMNQLEKMP--YEHDSYLWNALH 494 (605)
Q Consensus 424 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~ 494 (605)
.+..++.+.|++++|..+|+++.. ..|+ ..++..+..++...|+.++|...|++.- ..+....|+.++
T Consensus 159 ~~a~~l~~~g~~~~A~~~y~~~~~---~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~ 229 (694)
T PRK15179 159 LEAKSWDEIGQSEQADACFERLSR---QHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRL 229 (694)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHh---cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHH
Confidence 888888999999999999999983 3444 7788999999999999999999998862 234455554443
No 126
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.49 E-value=3.1e-05 Score=81.94 Aligned_cols=216 Identities=14% Similarity=0.160 Sum_probs=144.0
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHhhcCCC--------CcchHHHHHHHHHhcCChHHHHHHHhhCCCC--ChhhHHHH
Q 007400 219 NVVISSSIVDAYAKCGELSDARRLFDETDAR--------DVLTWTTMVSGYAKLGDMESASKLFNEMPEK--NPVSWTTL 288 (605)
Q Consensus 219 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--------~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~l 288 (605)
....|-.-|......+++++|+++.++.... -...|.++++.....|.-+...++|++..+- ....|..|
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~~~L 1536 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVHLKL 1536 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHHHHH
Confidence 3456666777777778888888777776543 2245777777766677777777778777653 23467777
Q ss_pred HHHHHhCCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhcccchHHHHHHHHHHHHcCCC-CChhHHHHHHHHHHhcCC
Q 007400 289 IAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFR-SNTIVMSSLIDMYSKCGC 367 (605)
Q Consensus 289 ~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~ 367 (605)
...|.+.+.+++|.++|+.|.+. ..-....|...+..+.+.++-+.|..++.++++.-.+ .........+..-.+.|+
T Consensus 1537 ~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GD 1615 (1710)
T KOG1070|consen 1537 LGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGD 1615 (1710)
T ss_pred HHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCC
Confidence 88888888888888888888764 2345567777777777777778888888777765322 134445555666677777
Q ss_pred hHHHHHHHHhcCCC-C-CcchHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHhccCcH
Q 007400 368 LNDGRQVFDLTDNK-E-NSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDK--ITLAVILNACTHSGLV 435 (605)
Q Consensus 368 ~~~A~~~~~~~~~~-~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~--~~~~~l~~~~~~~g~~ 435 (605)
.+.++.+|+..... | -...|+..|+.-.++|+.+.+..+|++.+..++.|-. ..|...+..--..|+-
T Consensus 1616 aeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde 1687 (1710)
T KOG1070|consen 1616 AERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDE 1687 (1710)
T ss_pred chhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCch
Confidence 77777777765422 1 4556777777777777777777777777777766643 2444444433333443
No 127
>PLN02789 farnesyltranstransferase
Probab=98.48 E-value=2.7e-05 Score=73.07 Aligned_cols=187 Identities=12% Similarity=0.067 Sum_probs=140.7
Q ss_pred HHHHhcCChHHHHHHHHhcCCC-C-CcchHHHHHHHHHHcC-CHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCcH
Q 007400 360 DMYSKCGCLNDGRQVFDLTDNK-E-NSMLWNTMISALTQHG-YDEQAIRLFHDMVRSSVKP-DKITLAVILNACTHSGLV 435 (605)
Q Consensus 360 ~~~~~~g~~~~A~~~~~~~~~~-~-~~~~~~~l~~~~~~~g-~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~ 435 (605)
..+...+..++|+.+++.+... | +..+|+.....+...| ++++++..++++.+. .| +..+|+.....+.+.|+.
T Consensus 45 a~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~--npknyqaW~~R~~~l~~l~~~ 122 (320)
T PLN02789 45 AVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAED--NPKNYQIWHHRRWLAEKLGPD 122 (320)
T ss_pred HHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHH--CCcchHHhHHHHHHHHHcCch
Confidence 3344557788888888875532 2 4556777777777777 679999999999985 44 445777666666666653
Q ss_pred --HHHHHHHHHchHhhCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhc---CC----H
Q 007400 436 --QEGLTYFESMTHDLGIIPN-QEHHACLIELLAQAGCSDQLMNQLEKMP--YEHDSYLWNALHGVCRIH---GN----I 503 (605)
Q Consensus 436 --~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~---g~----~ 503 (605)
+.+..+++++. ...|. ..+|+....++.+.|+++++++.++++- ...+..+|+....++... |. .
T Consensus 123 ~~~~el~~~~kal---~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~ 199 (320)
T PLN02789 123 AANKELEFTRKIL---SLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMR 199 (320)
T ss_pred hhHHHHHHHHHHH---HhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccH
Confidence 67888888888 44554 7889999999999999999999999872 345677888777666554 22 3
Q ss_pred HHHHHHHHHHHhcCCCCCchHHHHHHHHHhc----CCchHHHHHHHHHHhCC
Q 007400 504 DMGRKVVDQLIDQNPQSSATHGLLSSIYSAL----GKGRLVEKVRQLINERQ 551 (605)
Q Consensus 504 ~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~----g~~~~a~~~~~~~~~~~ 551 (605)
++++.+..++++.+|+|..+|..+..++... ++..+|.+.+..+...+
T Consensus 200 e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~ 251 (320)
T PLN02789 200 DSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD 251 (320)
T ss_pred HHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc
Confidence 5788889999999999999999999999883 45567888887765533
No 128
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.46 E-value=3.4e-05 Score=80.81 Aligned_cols=128 Identities=9% Similarity=0.132 Sum_probs=77.2
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHchHhhCCCCCHHHHHHHHHH
Q 007400 386 LWNTMISALTQHGYDEQAIRLFHDMVRSSVKP-DKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIEL 464 (605)
Q Consensus 386 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~ 464 (605)
++..++.+|-+.|+.++|..+|+++++. .| |..+.+.+...|... +.++|.+++.++...
T Consensus 118 Al~~LA~~Ydk~g~~~ka~~~yer~L~~--D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~---------------- 178 (906)
T PRK14720 118 ALRTLAEAYAKLNENKKLKGVWERLVKA--DRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR---------------- 178 (906)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH----------------
Confidence 4455555555555555555555555553 23 344555555555555 555555555554411
Q ss_pred HHhcCChHHHHHHHHhCC----------------------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc
Q 007400 465 LAQAGCSDQLMNQLEKMP----------------------YEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSA 522 (605)
Q Consensus 465 ~~~~g~~~~A~~~~~~~~----------------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 522 (605)
|...+++.++.++++++. ..--+.++.-+-..|...++++++..+++.+++.+|.|..
T Consensus 179 ~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~ 258 (906)
T PRK14720 179 FIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNK 258 (906)
T ss_pred HHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchh
Confidence 223333334444333321 1112233444456677888999999999999999999999
Q ss_pred hHHHHHHHHH
Q 007400 523 THGLLSSIYS 532 (605)
Q Consensus 523 ~~~~l~~~~~ 532 (605)
+...++.+|.
T Consensus 259 a~~~l~~~y~ 268 (906)
T PRK14720 259 AREELIRFYK 268 (906)
T ss_pred hHHHHHHHHH
Confidence 9999999998
No 129
>PF12854 PPR_1: PPR repeat
Probab=98.42 E-value=4.1e-07 Score=52.93 Aligned_cols=32 Identities=38% Similarity=0.685 Sum_probs=21.6
Q ss_pred CCCCChhHHHHHHHHHHhcCChHHHHHHHhhc
Q 007400 215 GFLSNVVISSSIVDAYAKCGELSDARRLFDET 246 (605)
Q Consensus 215 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 246 (605)
|+.||..+|+.|+.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 55666666666666666666666666666665
No 130
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.39 E-value=1e-05 Score=66.38 Aligned_cols=114 Identities=11% Similarity=0.095 Sum_probs=89.7
Q ss_pred HHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHchHhhCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHhC-C
Q 007400 406 LFHDMVRSSVKPD-KITLAVILNACTHSGLVQEGLTYFESMTHDLGIIP-NQEHHACLIELLAQAGCSDQLMNQLEKM-P 482 (605)
Q Consensus 406 ~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~ 482 (605)
.+++.+. ..|+ ......+...+...|++++|...++.+.. ..| +...+..+..++...|++++|...+++. .
T Consensus 5 ~~~~~l~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~---~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 79 (135)
T TIGR02552 5 TLKDLLG--LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAA---YDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAA 79 (135)
T ss_pred hHHHHHc--CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHH---hCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4556666 4554 34666777788888999999999988872 234 4778888899999999999999988876 2
Q ss_pred -CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchH
Q 007400 483 -YEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATH 524 (605)
Q Consensus 483 -~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 524 (605)
.+.+...+..++..+...|++++|...++++++..|++....
T Consensus 80 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 122 (135)
T TIGR02552 80 LDPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPEYS 122 (135)
T ss_pred cCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHH
Confidence 345677888889999999999999999999999999766543
No 131
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.38 E-value=8e-06 Score=78.11 Aligned_cols=123 Identities=13% Similarity=0.104 Sum_probs=96.3
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHchHhhCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHH
Q 007400 421 TLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMP--YEHDSYLWNALHGVCR 498 (605)
Q Consensus 421 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~ 498 (605)
....|+..+...++++.|..+++++.+. .|+ ....+++.+...++-.+|.+++.+.- .+.+...+...+..|.
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~---~pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl 245 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRER---DPE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLL 245 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhc---CCc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 4445555666677788888888887722 354 33456777777777778888777652 2346777777788899
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHH
Q 007400 499 IHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLIN 548 (605)
Q Consensus 499 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 548 (605)
..++++.|+.+.+++.+..|++..+|..|+.+|.+.|+++.|+..+..+.
T Consensus 246 ~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 246 SKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred hcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 99999999999999999999999999999999999999999999888774
No 132
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.37 E-value=0.00011 Score=63.87 Aligned_cols=148 Identities=12% Similarity=0.077 Sum_probs=105.5
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHchHhhCCCCCHHHHHHHHHHHH----
Q 007400 391 ISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLA---- 466 (605)
Q Consensus 391 ~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~---- 466 (605)
+..|+..|++++|++..+... +......=+..+.+..+.+-|.+.+++|. .+. +..+.+.|..++.
T Consensus 115 a~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq---~id-ed~tLtQLA~awv~la~ 184 (299)
T KOG3081|consen 115 AIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQ---QID-EDATLTQLAQAWVKLAT 184 (299)
T ss_pred hHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHH---ccc-hHHHHHHHHHHHHHHhc
Confidence 345777888888887776511 22233333445566677788888888887 222 2344554555443
Q ss_pred hcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHH-H
Q 007400 467 QAGCSDQLMNQLEKMP--YEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEK-V 543 (605)
Q Consensus 467 ~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~-~ 543 (605)
..+++.+|.-+|+++. .+|++.+.+..+.++...|++++|..+++.++..++.++.++..+..+-...|+-.++.+ .
T Consensus 185 ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~ 264 (299)
T KOG3081|consen 185 GGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERN 264 (299)
T ss_pred cchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHH
Confidence 3457888888888884 568888888888899999999999999999999999999999999888888898877644 3
Q ss_pred HHHHH
Q 007400 544 RQLIN 548 (605)
Q Consensus 544 ~~~~~ 548 (605)
+..+.
T Consensus 265 l~QLk 269 (299)
T KOG3081|consen 265 LSQLK 269 (299)
T ss_pred HHHHH
Confidence 44443
No 133
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.35 E-value=0.00023 Score=61.98 Aligned_cols=155 Identities=15% Similarity=0.144 Sum_probs=84.3
Q ss_pred HHHHHhcCChHHHHHHHHhcCCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc----cCc
Q 007400 359 IDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTH----SGL 434 (605)
Q Consensus 359 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~----~g~ 434 (605)
...|+..|++++|++...... +......=...+.+..+.+-|...+++|.+ +. +..|.+.|..++.+ .+.
T Consensus 115 a~i~~~~~~~deAl~~~~~~~---~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~--id-ed~tLtQLA~awv~la~ggek 188 (299)
T KOG3081|consen 115 AIIYMHDGDFDEALKALHLGE---NLEAAALNVQILLKMHRFDLAEKELKKMQQ--ID-EDATLTQLAQAWVKLATGGEK 188 (299)
T ss_pred hHHhhcCCChHHHHHHHhccc---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--cc-hHHHHHHHHHHHHHHhccchh
Confidence 445556666666666655411 111222222334455566666667777665 22 44455555555432 345
Q ss_pred HHHHHHHHHHchHhhCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCH-HHHHHHHH
Q 007400 435 VQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMP--YEHDSYLWNALHGVCRIHGNI-DMGRKVVD 511 (605)
Q Consensus 435 ~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~ 511 (605)
+.+|.-+|+++. + ...|+..+.+....++...|++++|..++++.. ...++.+...++..-...|.. +--.+...
T Consensus 189 ~qdAfyifeE~s-~-k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~ 266 (299)
T KOG3081|consen 189 IQDAFYIFEELS-E-KTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLS 266 (299)
T ss_pred hhhHHHHHHHHh-c-ccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHH
Confidence 666777777765 2 356666666666666677777777777766652 234455555555444444433 33445555
Q ss_pred HHHhcCCCCC
Q 007400 512 QLIDQNPQSS 521 (605)
Q Consensus 512 ~~~~~~p~~~ 521 (605)
+.....|.++
T Consensus 267 QLk~~~p~h~ 276 (299)
T KOG3081|consen 267 QLKLSHPEHP 276 (299)
T ss_pred HHHhcCCcch
Confidence 6555566433
No 134
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.35 E-value=9.8e-05 Score=70.02 Aligned_cols=145 Identities=14% Similarity=0.136 Sum_probs=106.8
Q ss_pred chHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHchHhhCCCCC-HHHHHHHH
Q 007400 385 MLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPD-KITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPN-QEHHACLI 462 (605)
Q Consensus 385 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~ 462 (605)
..+......+...|++++|+..++.++.. .|+ ..........+...++.++|.+.++++. ...|+ ....-.+.
T Consensus 307 aa~YG~A~~~~~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal---~l~P~~~~l~~~~a 381 (484)
T COG4783 307 AAQYGRALQTYLAGQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKAL---ALDPNSPLLQLNLA 381 (484)
T ss_pred HHHHHHHHHHHHhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH---hcCCCccHHHHHHH
Confidence 34444455566778888888888888874 554 4455566677888888888888888887 55666 55666778
Q ss_pred HHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHH
Q 007400 463 ELLAQAGCSDQLMNQLEKMP--YEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLV 540 (605)
Q Consensus 463 ~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 540 (605)
.+|.+.|++.+|+..+++.. .+.|+..|..|+.+|...|+..++... .+..|.-.|+|++|
T Consensus 382 ~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A-----------------~AE~~~~~G~~~~A 444 (484)
T COG4783 382 QALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLA-----------------RAEGYALAGRLEQA 444 (484)
T ss_pred HHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHH-----------------HHHHHHhCCCHHHH
Confidence 88888888888888887752 456788888888888888887776544 34466677888888
Q ss_pred HHHHHHHHhCC
Q 007400 541 EKVRQLINERQ 551 (605)
Q Consensus 541 ~~~~~~~~~~~ 551 (605)
+..+....+..
T Consensus 445 ~~~l~~A~~~~ 455 (484)
T COG4783 445 IIFLMRASQQV 455 (484)
T ss_pred HHHHHHHHHhc
Confidence 88888776653
No 135
>PF12854 PPR_1: PPR repeat
Probab=98.35 E-value=8.7e-07 Score=51.57 Aligned_cols=32 Identities=25% Similarity=0.510 Sum_probs=15.8
Q ss_pred CCCCChhHHHHHHHHHHhcCChHHHHHHHHhc
Q 007400 347 NFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLT 378 (605)
Q Consensus 347 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 378 (605)
|+.||..+|++||++|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 34445555555555555555555555555444
No 136
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.33 E-value=5e-05 Score=79.60 Aligned_cols=201 Identities=13% Similarity=0.024 Sum_probs=134.2
Q ss_pred HHHHHHHHhcccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCCCCCcchHHHHHHHHHHcCC
Q 007400 320 FSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGY 399 (605)
Q Consensus 320 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 399 (605)
+..|+..+...+++++|.++.+...+.. +.....|-.+...+.+.++..++..+ .++.......+
T Consensus 34 ~~~Li~~~~~~~~~deai~i~~~~l~~~-P~~i~~yy~~G~l~~q~~~~~~~~lv--------------~~l~~~~~~~~ 98 (906)
T PRK14720 34 LDDLIDAYKSENLTDEAKDICEEHLKEH-KKSISALYISGILSLSRRPLNDSNLL--------------NLIDSFSQNLK 98 (906)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhC-CcceehHHHHHHHHHhhcchhhhhhh--------------hhhhhcccccc
Confidence 3334444444444444444444333332 22333333344455555554444333 33344444555
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHchHhhCCCCC-HHHHHHHHHHHHhcCChHHHHHHH
Q 007400 400 DEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPN-QEHHACLIELLAQAGCSDQLMNQL 478 (605)
Q Consensus 400 ~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~ 478 (605)
+.-+..+...|.. ..-+...+..++.+|.+.|+.++|..+|+++. .+.|+ +.+.+.++..|... ++++|.+++
T Consensus 99 ~~~ve~~~~~i~~--~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L---~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~ 172 (906)
T PRK14720 99 WAIVEHICDKILL--YGENKLALRTLAEAYAKLNENKKLKGVWERLV---KADRDNPEIVKKLATSYEEE-DKEKAITYL 172 (906)
T ss_pred hhHHHHHHHHHHh--hhhhhHHHHHHHHHHHHcCChHHHHHHHHHHH---hcCcccHHHHHHHHHHHHHh-hHHHHHHHH
Confidence 6555555556666 23355689999999999999999999999999 34465 88999999999999 999999998
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchH--------------------HHHHHHHHhcCCch
Q 007400 479 EKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATH--------------------GLLSSIYSALGKGR 538 (605)
Q Consensus 479 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~--------------------~~l~~~~~~~g~~~ 538 (605)
.+.. ..+...+++..+.++++++++.+|++...+ ..+-..|...++|+
T Consensus 173 ~KAV------------~~~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~ 240 (906)
T PRK14720 173 KKAI------------YRFIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWD 240 (906)
T ss_pred HHHH------------HHHHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhh
Confidence 8753 236666788888999999998888765542 23336777788999
Q ss_pred HHHHHHHHHHhCCCc
Q 007400 539 LVEKVRQLINERQFK 553 (605)
Q Consensus 539 ~a~~~~~~~~~~~~~ 553 (605)
++..+++.+.+...+
T Consensus 241 ~~i~iLK~iL~~~~~ 255 (906)
T PRK14720 241 EVIYILKKILEHDNK 255 (906)
T ss_pred HHHHHHHHHHhcCCc
Confidence 999999999876543
No 137
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.33 E-value=0.0001 Score=69.90 Aligned_cols=123 Identities=15% Similarity=0.157 Sum_probs=105.3
Q ss_pred HHHHHHhccCcHHHHHHHHHHchHhhCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHhCC-CCCC-HHHHHHHHHHHHhc
Q 007400 424 VILNACTHSGLVQEGLTYFESMTHDLGIIPN-QEHHACLIELLAQAGCSDQLMNQLEKMP-YEHD-SYLWNALHGVCRIH 500 (605)
Q Consensus 424 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~-~~~~~~l~~~~~~~ 500 (605)
.....+...|.++.|+..++.+. .-.|+ +.......+.+.+.++.++|.+.++++. ..|+ ...+..++.++.+.
T Consensus 311 G~A~~~~~~~~~d~A~~~l~~L~---~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~ 387 (484)
T COG4783 311 GRALQTYLAGQYDEALKLLQPLI---AAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKG 387 (484)
T ss_pred HHHHHHHHhcccchHHHHHHHHH---HhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhc
Confidence 33344566789999999999988 33555 6667778889999999999999999973 3455 67788899999999
Q ss_pred CCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 007400 501 GNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINE 549 (605)
Q Consensus 501 g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 549 (605)
|+..+|+..++.....+|+++..|..|+.+|...|+..++.....+...
T Consensus 388 g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~ 436 (484)
T COG4783 388 GKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGYA 436 (484)
T ss_pred CChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999998877643
No 138
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.22 E-value=0.00019 Score=61.94 Aligned_cols=162 Identities=16% Similarity=0.241 Sum_probs=128.0
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHchHhhCCCCC-HHHHHHHHH
Q 007400 386 LWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDK-ITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPN-QEHHACLIE 463 (605)
Q Consensus 386 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~ 463 (605)
.|..++-+....|+.+.|...++++... + |.+ ..-..-..-+...|++++|+++++.+..+ .|+ ..++..=+.
T Consensus 54 l~EqV~IAAld~~~~~lAq~C~~~L~~~-f-p~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~d---dpt~~v~~KRKlA 128 (289)
T KOG3060|consen 54 LYEQVFIAALDTGRDDLAQKCINQLRDR-F-PGSKRVGKLKAMLLEATGNYKEAIEYYESLLED---DPTDTVIRKRKLA 128 (289)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHh-C-CCChhHHHHHHHHHHHhhchhhHHHHHHHHhcc---CcchhHHHHHHHH
Confidence 3555666777889999999999999886 4 544 34333344456679999999999999843 354 667766677
Q ss_pred HHHhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcC---Cch
Q 007400 464 LLAQAGCSDQLMNQLEKM--PYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALG---KGR 538 (605)
Q Consensus 464 ~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g---~~~ 538 (605)
.....|+.-+|++.+.+. .+..|...|.-+...|...|++++|.-.+++++=..|.++..+..++.++.-.| +..
T Consensus 129 ilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~ 208 (289)
T KOG3060|consen 129 ILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLE 208 (289)
T ss_pred HHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHH
Confidence 777888888888777665 255899999999999999999999999999999999999999999999988776 455
Q ss_pred HHHHHHHHHHhCCC
Q 007400 539 LVEKVRQLINERQF 552 (605)
Q Consensus 539 ~a~~~~~~~~~~~~ 552 (605)
-+.++|.+..+...
T Consensus 209 ~arkyy~~alkl~~ 222 (289)
T KOG3060|consen 209 LARKYYERALKLNP 222 (289)
T ss_pred HHHHHHHHHHHhCh
Confidence 67888887776544
No 139
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.20 E-value=5.7e-05 Score=72.35 Aligned_cols=124 Identities=15% Similarity=0.178 Sum_probs=98.1
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhcCCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhc
Q 007400 353 IVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKP-DKITLAVILNACTH 431 (605)
Q Consensus 353 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~ 431 (605)
.....|+..+...++++.|.++|+++... ++.....+++.+...++..+|++++++.+.. .| +...+..-...|..
T Consensus 170 yLv~~Ll~~l~~t~~~~~ai~lle~L~~~-~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~--~p~d~~LL~~Qa~fLl~ 246 (395)
T PF09295_consen 170 YLVDTLLKYLSLTQRYDEAIELLEKLRER-DPEVAVLLARVYLLMNEEVEAIRLLNEALKE--NPQDSELLNLQAEFLLS 246 (395)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHhc-CCcHHHHHHHHHHhcCcHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHh
Confidence 34455666777778888888888888876 5556666788888888888899999888874 34 55566666777888
Q ss_pred cCcHHHHHHHHHHchHhhCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHhCC
Q 007400 432 SGLVQEGLTYFESMTHDLGIIPN-QEHHACLIELLAQAGCSDQLMNQLEKMP 482 (605)
Q Consensus 432 ~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 482 (605)
.++++.|+.+.+++. ...|+ ..+|..|+.+|.+.|+++.|+..++.++
T Consensus 247 k~~~~lAL~iAk~av---~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 247 KKKYELALEIAKKAV---ELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred cCCHHHHHHHHHHHH---HhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 889999999999888 56776 6688899999999999999998888876
No 140
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.19 E-value=6.1e-05 Score=62.36 Aligned_cols=85 Identities=21% Similarity=0.169 Sum_probs=39.7
Q ss_pred HHHHHHhcCChHHHHHHHHhCC-CCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcC
Q 007400 461 LIELLAQAGCSDQLMNQLEKMP-YEHDS----YLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALG 535 (605)
Q Consensus 461 l~~~~~~~g~~~~A~~~~~~~~-~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 535 (605)
+...+...|++++|...|+... ..|+. .....++..+...|++++|+..++.. ...+..+..+...+++|.+.|
T Consensus 54 lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g 132 (145)
T PF09976_consen 54 LAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQI-PDEAFKALAAELLGDIYLAQG 132 (145)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhc-cCcchHHHHHHHHHHHHHHCC
Confidence 3344444455555555444431 11221 12333445555555555555555442 122223444555566666666
Q ss_pred CchHHHHHHHH
Q 007400 536 KGRLVEKVRQL 546 (605)
Q Consensus 536 ~~~~a~~~~~~ 546 (605)
++++|+..|+.
T Consensus 133 ~~~~A~~~y~~ 143 (145)
T PF09976_consen 133 DYDEARAAYQK 143 (145)
T ss_pred CHHHHHHHHHH
Confidence 66666555553
No 141
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.19 E-value=4.2e-06 Score=59.10 Aligned_cols=65 Identities=14% Similarity=0.160 Sum_probs=60.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcC-CchHHHHHHHHHHhC
Q 007400 486 DSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALG-KGRLVEKVRQLINER 550 (605)
Q Consensus 486 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~ 550 (605)
++.+|..++..+...|++++|+..|+++++.+|+++.++..++.+|...| ++++|++.+++..+.
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 56788899999999999999999999999999999999999999999999 799999999988653
No 142
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.18 E-value=0.00011 Score=60.74 Aligned_cols=124 Identities=18% Similarity=0.247 Sum_probs=87.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHhccCcHHHHHHHHHHchHhhCCCCC--HHHHHH
Q 007400 387 WNTMISALTQHGYDEQAIRLFHDMVRSSVKPDK----ITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPN--QEHHAC 460 (605)
Q Consensus 387 ~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~ 460 (605)
|..++..+ ..++...+...++.+.+. .|+. .....+...+...|++++|...|+.+... ...|+ ......
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~--~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~-~~d~~l~~~a~l~ 90 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKD--YPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN-APDPELKPLARLR 90 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHH--CCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-CCCHHHHHHHHHH
Confidence 44444444 478888888888888875 3332 24444567788889999999999988833 32332 234556
Q ss_pred HHHHHHhcCChHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007400 461 LIELLAQAGCSDQLMNQLEKMPY-EHDSYLWNALHGVCRIHGNIDMGRKVVDQLI 514 (605)
Q Consensus 461 l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 514 (605)
|..++...|++++|+..++.... ...+..+...+.++...|+.++|+..|++++
T Consensus 91 LA~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 91 LARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 77888889999999999987642 2345566677888999999999999998764
No 143
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.12 E-value=6.7e-06 Score=57.20 Aligned_cols=58 Identities=19% Similarity=0.156 Sum_probs=50.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 007400 493 LHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINER 550 (605)
Q Consensus 493 l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 550 (605)
++..+...|++++|+..|+++++..|+++..+..++.++...|++++|..+++++.+.
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 5667888899999999999999999999999999999999999999999999888654
No 144
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.12 E-value=5.4e-05 Score=60.41 Aligned_cols=94 Identities=14% Similarity=0.058 Sum_probs=63.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhCC-CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC---CchHHHHH
Q 007400 457 HHACLIELLAQAGCSDQLMNQLEKMP-YEHD----SYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQS---SATHGLLS 528 (605)
Q Consensus 457 ~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~---~~~~~~l~ 528 (605)
++..++..+.+.|++++|.+.++++. ..|+ ...+..++.++...|++++|...|++++...|++ +.++..++
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 44555666666777777777666652 1122 3455567777777777777777777777776654 45567777
Q ss_pred HHHHhcCCchHHHHHHHHHHhC
Q 007400 529 SIYSALGKGRLVEKVRQLINER 550 (605)
Q Consensus 529 ~~~~~~g~~~~a~~~~~~~~~~ 550 (605)
.++.+.|++++|...++.+.+.
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHH
Confidence 7777777777777777777664
No 145
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.11 E-value=6.3e-05 Score=72.48 Aligned_cols=102 Identities=10% Similarity=0.030 Sum_probs=60.7
Q ss_pred HHHHhccCcHHHHHHHHHHchHhhCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCC
Q 007400 426 LNACTHSGLVQEGLTYFESMTHDLGIIPN-QEHHACLIELLAQAGCSDQLMNQLEKMP--YEHDSYLWNALHGVCRIHGN 502 (605)
Q Consensus 426 ~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~ 502 (605)
...+...|+++.|+..|+++. ...|+ ...+..+..+|.+.|++++|+..++++. .+.+...|..++.+|...|+
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al---~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~ 85 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAI---DLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEE 85 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHH---HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCC
Confidence 344555666777777776666 33443 4556666666666666666666666541 22345556666666666666
Q ss_pred HHHHHHHHHHHHhcCCCCCchHHHHHHH
Q 007400 503 IDMGRKVVDQLIDQNPQSSATHGLLSSI 530 (605)
Q Consensus 503 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 530 (605)
+++|+..|++++++.|+++.....+..+
T Consensus 86 ~~eA~~~~~~al~l~P~~~~~~~~l~~~ 113 (356)
T PLN03088 86 YQTAKAALEKGASLAPGDSRFTKLIKEC 113 (356)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 6666666666666666665555544444
No 146
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.10 E-value=4.1e-05 Score=58.19 Aligned_cols=93 Identities=16% Similarity=0.104 Sum_probs=74.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcC
Q 007400 458 HACLIELLAQAGCSDQLMNQLEKMP--YEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALG 535 (605)
Q Consensus 458 ~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 535 (605)
+..++..+...|++++|...+++.. .+.+...+..++..+...|++++|...++++++..|.+...+..++.++...|
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 4556677778888888888887752 23344677778888888899999999999999998888888889999999999
Q ss_pred CchHHHHHHHHHHhC
Q 007400 536 KGRLVEKVRQLINER 550 (605)
Q Consensus 536 ~~~~a~~~~~~~~~~ 550 (605)
++++|...++...+.
T Consensus 83 ~~~~a~~~~~~~~~~ 97 (100)
T cd00189 83 KYEEALEAYEKALEL 97 (100)
T ss_pred hHHHHHHHHHHHHcc
Confidence 999999998877653
No 147
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.10 E-value=0.00029 Score=65.27 Aligned_cols=161 Identities=9% Similarity=-0.033 Sum_probs=117.4
Q ss_pred chHHHH-HHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHchHhhCCCCCHHHH----
Q 007400 385 MLWNTM-ISALTQHGYDEQAIRLFHDMVRSSVKP-DKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHH---- 458 (605)
Q Consensus 385 ~~~~~l-~~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~---- 458 (605)
.+|..+ ..++...|++++|...-...++. .+ +......-..++...++.+.|...|++.. ...|+...-
T Consensus 169 ~~a~~lka~cl~~~~~~~~a~~ea~~ilkl--d~~n~~al~vrg~~~yy~~~~~ka~~hf~qal---~ldpdh~~sk~~~ 243 (486)
T KOG0550|consen 169 FKAKLLKAECLAFLGDYDEAQSEAIDILKL--DATNAEALYVRGLCLYYNDNADKAINHFQQAL---RLDPDHQKSKSAS 243 (486)
T ss_pred hHHHHhhhhhhhhcccchhHHHHHHHHHhc--ccchhHHHHhcccccccccchHHHHHHHhhhh---ccChhhhhHHhHh
Confidence 344433 23566789999998887777763 33 22333333334556788899999998887 556653221
Q ss_pred ---------HHHHHHHHhcCChHHHHHHHHhC-C-----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCch
Q 007400 459 ---------ACLIELLAQAGCSDQLMNQLEKM-P-----YEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSAT 523 (605)
Q Consensus 459 ---------~~l~~~~~~~g~~~~A~~~~~~~-~-----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 523 (605)
..=..-..+.|.+..|.+.|.+. . .+++...|.....+..+.|+.++|+.-.+.+++++|.-...
T Consensus 244 ~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syika 323 (486)
T KOG0550|consen 244 MMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKA 323 (486)
T ss_pred hhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHH
Confidence 11123355789999999999875 2 34556677777788889999999999999999999988888
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHhC
Q 007400 524 HGLLSSIYSALGKGRLVEKVRQLINER 550 (605)
Q Consensus 524 ~~~l~~~~~~~g~~~~a~~~~~~~~~~ 550 (605)
+..-+.++...++|++|++.++...+.
T Consensus 324 ll~ra~c~l~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 324 LLRRANCHLALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999988664
No 148
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.10 E-value=3.6e-06 Score=62.12 Aligned_cols=78 Identities=18% Similarity=0.218 Sum_probs=47.3
Q ss_pred cCChHHHHHHHHhCC-CCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHH
Q 007400 468 AGCSDQLMNQLEKMP-YEH---DSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKV 543 (605)
Q Consensus 468 ~g~~~~A~~~~~~~~-~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~ 543 (605)
.|+++.|+.+++++. ..| +...+..++.++.+.|++++|..++++ .+..|.+......++.++.+.|++++|+++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 355555555555541 111 344555566777777777777777777 555565656666667777777777777777
Q ss_pred HHH
Q 007400 544 RQL 546 (605)
Q Consensus 544 ~~~ 546 (605)
+++
T Consensus 81 l~~ 83 (84)
T PF12895_consen 81 LEK 83 (84)
T ss_dssp HHH
T ss_pred Hhc
Confidence 664
No 149
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=98.10 E-value=0.0085 Score=55.49 Aligned_cols=247 Identities=13% Similarity=0.098 Sum_probs=168.5
Q ss_pred HHHhCCChHHHHHHHHHHHHCCCCCChH--HHHHHHHHHhcccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCh
Q 007400 291 GYTRNGLGQKALELFTRMMILRIRPNQH--TFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCL 368 (605)
Q Consensus 291 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~--~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 368 (605)
+-.-.|+++.|.+-|+.|.. .|... ....|.-...+.|+.+.|..+-+..-... +.-.......+...+..|++
T Consensus 129 aal~eG~~~~Ar~kfeAMl~---dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdW 204 (531)
T COG3898 129 AALLEGDYEDARKKFEAMLD---DPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDW 204 (531)
T ss_pred HHHhcCchHHHHHHHHHHhc---ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCCh
Confidence 34456888888888888875 23222 22233334456788888888777776654 44567778888999999999
Q ss_pred HHHHHHHHhcCCC----CCcc--hHHHHHHHHH---HcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCcHHHH
Q 007400 369 NDGRQVFDLTDNK----ENSM--LWNTMISALT---QHGYDEQAIRLFHDMVRSSVKPDKI-TLAVILNACTHSGLVQEG 438 (605)
Q Consensus 369 ~~A~~~~~~~~~~----~~~~--~~~~l~~~~~---~~g~~~~a~~~~~~m~~~~~~p~~~-~~~~l~~~~~~~g~~~~a 438 (605)
+.|+++.+.-... +++. .-..|+.+-. -..+...|...-.+..+ +.||.. .-.....++.+.|+..++
T Consensus 205 d~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg 282 (531)
T COG3898 205 DGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKG 282 (531)
T ss_pred HHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhh
Confidence 9999998853311 1332 1122222211 13456667666666666 788864 555667789999999999
Q ss_pred HHHHHHchHhhCCCCCHHHHHHHHHHHHhcCChHHH--H--HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007400 439 LTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQL--M--NQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLI 514 (605)
Q Consensus 439 ~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A--~--~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 514 (605)
-.+++.+- ...|.+.+...+ .+.+.|+.... . +-++.|. +.+......+..+....|++..|..-.+.+.
T Consensus 283 ~~ilE~aW---K~ePHP~ia~lY--~~ar~gdta~dRlkRa~~L~slk-~nnaes~~~va~aAlda~e~~~ARa~Aeaa~ 356 (531)
T COG3898 283 SKILETAW---KAEPHPDIALLY--VRARSGDTALDRLKRAKKLESLK-PNNAESSLAVAEAALDAGEFSAARAKAEAAA 356 (531)
T ss_pred hhHHHHHH---hcCCChHHHHHH--HHhcCCCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHhccchHHHHHHHHHHh
Confidence 99999998 345555544322 23455543221 1 2233444 4567777888888899999999999999999
Q ss_pred hcCCCCCchHHHHHHHHHhc-CCchHHHHHHHHHHhC
Q 007400 515 DQNPQSSATHGLLSSIYSAL-GKGRLVEKVRQLINER 550 (605)
Q Consensus 515 ~~~p~~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~ 550 (605)
...| ....|..|+++-... |+-.++...+-+....
T Consensus 357 r~~p-res~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 357 REAP-RESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred hhCc-hhhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 9999 788999999998877 9999999888776654
No 150
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.09 E-value=2.5e-05 Score=69.28 Aligned_cols=107 Identities=10% Similarity=0.078 Sum_probs=78.5
Q ss_pred HhccCcHHHHHHHHHHchHhhCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHH
Q 007400 429 CTHSGLVQEGLTYFESMTHDLGIIPN-QEHHACLIELLAQAGCSDQLMNQLEKMP-YEH-DSYLWNALHGVCRIHGNIDM 505 (605)
Q Consensus 429 ~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~g~~~~ 505 (605)
+.+.+++++|+..|.+++ .+.|+ +..|..-..+|.+.|.++.|++-.+... ..| -..+|..|+.+|...|++++
T Consensus 91 ~m~~~~Y~eAv~kY~~AI---~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAI---ELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHhhhHHHHHHHHHHHH---hcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHH
Confidence 456677888888888877 56665 5566666777888888888887777653 233 35677888888888888888
Q ss_pred HHHHHHHHHhcCCCCCchHHHHHHHHHhcCCch
Q 007400 506 GRKVVDQLIDQNPQSSATHGLLSSIYSALGKGR 538 (605)
Q Consensus 506 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 538 (605)
|++.|+++++++|++......|-.+-.+.+...
T Consensus 168 A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 168 AIEAYKKALELDPDNESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred HHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence 888888888888888866666666655555444
No 151
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.07 E-value=7.4e-06 Score=48.59 Aligned_cols=35 Identities=37% Similarity=0.572 Sum_probs=30.1
Q ss_pred eeHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCh
Q 007400 151 VSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNE 185 (605)
Q Consensus 151 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~ 185 (605)
.+||++|.+|++.|++++|.++|++|.+.|+.||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 37888999999999999999999999988888873
No 152
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.03 E-value=5.6e-05 Score=67.10 Aligned_cols=88 Identities=15% Similarity=0.127 Sum_probs=78.1
Q ss_pred HHHHhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHH
Q 007400 463 ELLAQAGCSDQLMNQLEKM-PY-EHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLV 540 (605)
Q Consensus 463 ~~~~~~g~~~~A~~~~~~~-~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 540 (605)
.-+.+.+++.+|+..|.+. .. +.|++.|..-+.+|.+.|+++.|++-.+.++.++|....+|..|+.+|...|++++|
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A 168 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEA 168 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHH
Confidence 4466789999999999886 33 456777777899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhC
Q 007400 541 EKVRQLINER 550 (605)
Q Consensus 541 ~~~~~~~~~~ 550 (605)
++.|++.++.
T Consensus 169 ~~aykKaLel 178 (304)
T KOG0553|consen 169 IEAYKKALEL 178 (304)
T ss_pred HHHHHhhhcc
Confidence 9999988763
No 153
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.02 E-value=0.00022 Score=63.89 Aligned_cols=127 Identities=12% Similarity=0.072 Sum_probs=100.2
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHhcCCCCCchHHHH
Q 007400 453 PNQEHHACLIELLAQAGCSDQLMNQLEKMP--YEHDSYLWNALHGVCRIH---GNIDMGRKVVDQLIDQNPQSSATHGLL 527 (605)
Q Consensus 453 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~~p~~~~~~~~l 527 (605)
-|...|..|...|.+.|++..|...|.+.. ..+++..+..++.++..+ ....++..++++++..+|.|..+...|
T Consensus 154 ~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~lL 233 (287)
T COG4235 154 GDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSLL 233 (287)
T ss_pred CCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHHH
Confidence 347889999999999999999999888762 346777787777776543 356789999999999999999999999
Q ss_pred HHHHHhcCCchHHHHHHHHHHhCCCcCCCceeEEEECCEEEEEEeCCCCCcchHHHHHHHHHHHHHHhhCCCCC
Q 007400 528 SSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQMGEDAPSL 601 (605)
Q Consensus 528 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 601 (605)
+..+...|++.+|...|+.|.+.... ..|...-+.+.+.+........|..|
T Consensus 234 A~~afe~g~~~~A~~~Wq~lL~~lp~----------------------~~~rr~~ie~~ia~~~~~~~~~~~~~ 285 (287)
T COG4235 234 AFAAFEQGDYAEAAAAWQMLLDLLPA----------------------DDPRRSLIERSIARALAQRSAQGPAA 285 (287)
T ss_pred HHHHHHcccHHHHHHHHHHHHhcCCC----------------------CCchHHHHHHHHHHHHhcccccCCCC
Confidence 99999999999999999999886432 34455556666666666666655544
No 154
>PRK15331 chaperone protein SicA; Provisional
Probab=98.01 E-value=8.4e-05 Score=60.43 Aligned_cols=100 Identities=11% Similarity=0.026 Sum_probs=84.2
Q ss_pred CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHH
Q 007400 450 GIIPN-QEHHACLIELLAQAGCSDQLMNQLEKMP--YEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGL 526 (605)
Q Consensus 450 ~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 526 (605)
|+.++ .........-+...|++++|..+|.-+. ...+...|..|+.++...+++++|...|..+..+.++|+.....
T Consensus 31 gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~ 110 (165)
T PRK15331 31 GIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFF 110 (165)
T ss_pred CCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccch
Confidence 44444 3334445555678899999999998752 34677888999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCchHHHHHHHHHHh
Q 007400 527 LSSIYSALGKGRLVEKVRQLINE 549 (605)
Q Consensus 527 l~~~~~~~g~~~~a~~~~~~~~~ 549 (605)
.+.+|...|+.+.|+..|+.+.+
T Consensus 111 agqC~l~l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 111 TGQCQLLMRKAAKARQCFELVNE 133 (165)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHh
Confidence 99999999999999999998876
No 155
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.01 E-value=9.6e-06 Score=47.68 Aligned_cols=33 Identities=15% Similarity=0.411 Sum_probs=25.9
Q ss_pred eeHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC
Q 007400 151 VSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISC 183 (605)
Q Consensus 151 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p 183 (605)
.+|+.+|.+|++.|+++.|.++|+.|++.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 467788888888888888888888888777766
No 156
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.01 E-value=1.7e-05 Score=55.76 Aligned_cols=53 Identities=17% Similarity=0.307 Sum_probs=46.9
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 007400 498 RIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINER 550 (605)
Q Consensus 498 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 550 (605)
...|++++|++.|+++++..|++...+..++.+|.+.|++++|..+++.+...
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 46789999999999999999999999999999999999999999999977653
No 157
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.00 E-value=0.00012 Score=58.49 Aligned_cols=105 Identities=13% Similarity=0.048 Sum_probs=66.0
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHchHhhCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHhCC-CCC----CHHHHHHHH
Q 007400 421 TLAVILNACTHSGLVQEGLTYFESMTHDLGIIP-NQEHHACLIELLAQAGCSDQLMNQLEKMP-YEH----DSYLWNALH 494 (605)
Q Consensus 421 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~----~~~~~~~l~ 494 (605)
++..++..+...|++++|...|+.+.....-.+ ....+..++.++.+.|++++|...++++. ..| ...++..++
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 344455555666666666666666652211111 13345556666667777777776666542 112 245677777
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCCchHH
Q 007400 495 GVCRIHGNIDMGRKVVDQLIDQNPQSSATHG 525 (605)
Q Consensus 495 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 525 (605)
.++...|+.++|...++++++..|++.....
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 114 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKRYPGSSAAKL 114 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHHCcCChhHHH
Confidence 8888889999999999999999887765444
No 158
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=97.99 E-value=1.6e-05 Score=47.08 Aligned_cols=35 Identities=34% Similarity=0.680 Sum_probs=31.0
Q ss_pred chHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH
Q 007400 385 MLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDK 419 (605)
Q Consensus 385 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~ 419 (605)
.+|++++.+|++.|++++|.++|++|.+.|+.||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 37899999999999999999999999999998873
No 159
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.97 E-value=0.0013 Score=53.95 Aligned_cols=151 Identities=11% Similarity=0.050 Sum_probs=110.8
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHchHhhCCCCCHHHHHHHHHHHHhcCChHHH
Q 007400 395 TQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQL 474 (605)
Q Consensus 395 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 474 (605)
.+.=+++...+-..+-.+ ..|+...-..|..+....|++.+|...|++.. ..-+.-|....-.+.++....+++..|
T Consensus 67 ~q~ldP~R~~Rea~~~~~--~ApTvqnr~rLa~al~elGr~~EA~~hy~qal-sG~fA~d~a~lLglA~Aqfa~~~~A~a 143 (251)
T COG4700 67 QQKLDPERHLREATEELA--IAPTVQNRYRLANALAELGRYHEAVPHYQQAL-SGIFAHDAAMLLGLAQAQFAIQEFAAA 143 (251)
T ss_pred HHhcChhHHHHHHHHHHh--hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHh-ccccCCCHHHHHHHHHHHHhhccHHHH
Confidence 333344444433333333 56777777778888888999999999998887 434455677778888888888999999
Q ss_pred HHHHHhCC-CCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 007400 475 MNQLEKMP-YEH---DSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINE 549 (605)
Q Consensus 475 ~~~~~~~~-~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 549 (605)
...++++. .+| ++.....++..+...|.+.+|+..|+.+++..| .+..-..++..+.++|+.+++..-+..+.+
T Consensus 144 ~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~yp-g~~ar~~Y~e~La~qgr~~ea~aq~~~v~d 221 (251)
T COG4700 144 QQTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYP-GPQARIYYAEMLAKQGRLREANAQYVAVVD 221 (251)
T ss_pred HHHHHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCC-CHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 88888752 122 223344567888899999999999999999999 788888899999999988888665555443
No 160
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.97 E-value=0.00013 Score=70.33 Aligned_cols=97 Identities=11% Similarity=0.001 Sum_probs=79.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHchHhhCCCCC-HHHHHHHHHHHH
Q 007400 389 TMISALTQHGYDEQAIRLFHDMVRSSVKP-DKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPN-QEHHACLIELLA 466 (605)
Q Consensus 389 ~l~~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~ 466 (605)
.....+...|++++|+..|+++++ ..| +...+..+..+|...|++++|+..++++. .+.|+ ...|..++.+|.
T Consensus 7 ~~a~~a~~~~~~~~Ai~~~~~Al~--~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al---~l~P~~~~a~~~lg~~~~ 81 (356)
T PLN03088 7 DKAKEAFVDDDFALAVDLYTQAID--LDPNNAELYADRAQANIKLGNFTEAVADANKAI---ELDPSLAKAYLRKGTACM 81 (356)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH---HhCcCCHHHHHHHHHHHH
Confidence 345567788999999999999998 456 45688888999999999999999999998 45665 778889999999
Q ss_pred hcCChHHHHHHHHhC-CCCCCHHHH
Q 007400 467 QAGCSDQLMNQLEKM-PYEHDSYLW 490 (605)
Q Consensus 467 ~~g~~~~A~~~~~~~-~~~~~~~~~ 490 (605)
..|++++|+..|++. ...|+....
T Consensus 82 ~lg~~~eA~~~~~~al~l~P~~~~~ 106 (356)
T PLN03088 82 KLEEYQTAKAALEKGASLAPGDSRF 106 (356)
T ss_pred HhCCHHHHHHHHHHHHHhCCCCHHH
Confidence 999999999999986 334443333
No 161
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.93 E-value=1.9e-05 Score=46.37 Aligned_cols=33 Identities=24% Similarity=0.465 Sum_probs=27.3
Q ss_pred hhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC
Q 007400 283 VSWTTLIAGYTRNGLGQKALELFTRMMILRIRP 315 (605)
Q Consensus 283 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p 315 (605)
.+|+.++.+|.+.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 478888888888888888888888888888776
No 162
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.86 E-value=0.0002 Score=61.35 Aligned_cols=81 Identities=16% Similarity=0.156 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHhCC-C---CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHH
Q 007400 456 EHHACLIELLAQAGCSDQLMNQLEKMP-Y---EHD-SYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSI 530 (605)
Q Consensus 456 ~~~~~l~~~~~~~g~~~~A~~~~~~~~-~---~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 530 (605)
..+..++..+...|++++|...+++.. . .++ ...+..++..+...|++++|...++++++..|++...+..++.+
T Consensus 36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 115 (172)
T PRK02603 36 FVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVI 115 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 345556666666677777766666541 1 111 35677788888889999999999999999999888888888888
Q ss_pred HHhcCC
Q 007400 531 YSALGK 536 (605)
Q Consensus 531 ~~~~g~ 536 (605)
+...|+
T Consensus 116 ~~~~g~ 121 (172)
T PRK02603 116 YHKRGE 121 (172)
T ss_pred HHHcCC
Confidence 888776
No 163
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.86 E-value=0.00069 Score=58.02 Aligned_cols=129 Identities=11% Similarity=0.144 Sum_probs=81.1
Q ss_pred cchHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHhccCcHHHHHHHHHHchHhhCCCCC-HHHHHH
Q 007400 384 SMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPD--KITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPN-QEHHAC 460 (605)
Q Consensus 384 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~ 460 (605)
...+..+...+...|++++|...|++.++.+..+. ...+..+..++.+.|++++|...+++.. ...|+ ...+..
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al---~~~p~~~~~~~~ 111 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQAL---ELNPKQPSALNN 111 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHH---HhCcccHHHHHH
Confidence 34566666777777888888888877776432222 2466677777777777888877777776 33443 455566
Q ss_pred HHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCC
Q 007400 461 LIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGK 536 (605)
Q Consensus 461 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 536 (605)
++.++...|+...+..-++... ..+++|.++++++++.+|++ +..++..+...|+
T Consensus 112 lg~~~~~~g~~~~a~~~~~~A~------------------~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~~~ 166 (172)
T PRK02603 112 IAVIYHKRGEKAEEAGDQDEAE------------------ALFDKAAEYWKQAIRLAPNN---YIEAQNWLKTTGR 166 (172)
T ss_pred HHHHHHHcCChHhHhhCHHHHH------------------HHHHHHHHHHHHHHhhCchh---HHHHHHHHHhcCc
Confidence 6666666666555443332211 12677888899988888865 4444444444443
No 164
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.86 E-value=0.00093 Score=67.41 Aligned_cols=62 Identities=19% Similarity=0.254 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 007400 487 SYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINE 549 (605)
Q Consensus 487 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 549 (605)
+.++..++......|++++|...++++++++| +...|..++.++...|+.++|.+.+++...
T Consensus 420 ~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~ 481 (517)
T PRK10153 420 PRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFN 481 (517)
T ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 34444444444445555555555555555555 445555555555555555555555555544
No 165
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.85 E-value=6e-05 Score=53.86 Aligned_cols=58 Identities=9% Similarity=0.048 Sum_probs=52.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 007400 494 HGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQ 551 (605)
Q Consensus 494 ~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 551 (605)
...|.+.++++.|.++++++++.+|+++..+...+.++...|++++|.+.++.+.+.+
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 4567889999999999999999999999999999999999999999999999988654
No 166
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.84 E-value=0.00017 Score=66.62 Aligned_cols=129 Identities=10% Similarity=0.048 Sum_probs=92.1
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHc---hHhhCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHhC-------C-CCCCH
Q 007400 420 ITLAVILNACTHSGLVQEGLTYFESM---THDLGIIPN-QEHHACLIELLAQAGCSDQLMNQLEKM-------P-YEHDS 487 (605)
Q Consensus 420 ~~~~~l~~~~~~~g~~~~a~~~~~~~---~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~-~~~~~ 487 (605)
..|..|...|.-.|+++.|+...+.= .+++|-... ...+..|..++.-.|+++.|.+.|+.. . ..-..
T Consensus 196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEA 275 (639)
T KOG1130|consen 196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEA 275 (639)
T ss_pred chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHH
Confidence 46677777777788999988766532 223343333 457888899999999999999988764 1 11233
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhc------CCCCCchHHHHHHHHHhcCCchHHHHHHHHHH
Q 007400 488 YLWNALHGVCRIHGNIDMGRKVVDQLIDQ------NPQSSATHGLLSSIYSALGKGRLVEKVRQLIN 548 (605)
Q Consensus 488 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 548 (605)
.+-.+|+..|....+++.|++++.+=+.+ .-....++..|+.++...|..++|..+.+.-+
T Consensus 276 QscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 276 QSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 44556788888888899999888776554 22356788899999999999999887766543
No 167
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.83 E-value=0.0002 Score=61.12 Aligned_cols=93 Identities=12% Similarity=0.023 Sum_probs=74.1
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHhCC-CCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHH
Q 007400 455 QEHHACLIELLAQAGCSDQLMNQLEKMP-YEH----DSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSS 529 (605)
Q Consensus 455 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 529 (605)
...+..++..+...|++++|...+++.. ..+ ...++..++.++...|++++|+..++++++..|.....+..++.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~ 114 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence 5566777777888888888888887752 112 23578889999999999999999999999999999998888898
Q ss_pred HHH-------hcCCchHHHHHHHHH
Q 007400 530 IYS-------ALGKGRLVEKVRQLI 547 (605)
Q Consensus 530 ~~~-------~~g~~~~a~~~~~~~ 547 (605)
++. ..|++++|...+++.
T Consensus 115 i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 115 ICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHhhHHHHHcccHHHHHHHHHHH
Confidence 888 888888666655544
No 168
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.83 E-value=5.6e-05 Score=52.47 Aligned_cols=61 Identities=18% Similarity=0.281 Sum_probs=49.0
Q ss_pred HHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 007400 461 LIELLAQAGCSDQLMNQLEKMP--YEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSS 521 (605)
Q Consensus 461 l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 521 (605)
+...+.+.|++++|.+.|++.. .+.+...+..++.++...|++++|...|+++++..|+++
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 4567788888888888888762 234677888899999999999999999999999999764
No 169
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.80 E-value=0.0031 Score=57.04 Aligned_cols=57 Identities=18% Similarity=0.262 Sum_probs=48.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCC---chHHHHHHHHHhcCCchHHHHHHHHHH
Q 007400 492 ALHGVCRIHGNIDMGRKVVDQLIDQNPQSS---ATHGLLSSIYSALGKGRLVEKVRQLIN 548 (605)
Q Consensus 492 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~ 548 (605)
.++..|.+.|.+..|..-++.+++..|+.+ .+...+..+|...|..++|..+...+.
T Consensus 180 ~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 180 SVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 356678899999999999999999988655 566688899999999999999887664
No 170
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.79 E-value=8.9e-05 Score=54.61 Aligned_cols=79 Identities=19% Similarity=0.328 Sum_probs=36.5
Q ss_pred cCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHhccCcHHHHHHHHHHchHhhCCCCC-HHHHHHHHHHHHhcCChHHH
Q 007400 397 HGYDEQAIRLFHDMVRSSVK-PDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPN-QEHHACLIELLAQAGCSDQL 474 (605)
Q Consensus 397 ~g~~~~a~~~~~~m~~~~~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A 474 (605)
.|+++.|+.+++++.+.... |+...+..+..++.+.|++++|..++++ . ...|+ ......++.++.+.|++++|
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~---~~~~~~~~~~~l~a~~~~~l~~y~eA 77 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-L---KLDPSNPDIHYLLARCLLKLGKYEEA 77 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-H---THHHCHHHHHHHHHHHHHHTT-HHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-h---CCCCCCHHHHHHHHHHHHHhCCHHHH
Confidence 35555666666665553210 1223334455555555666666555555 2 11221 23333445555555555555
Q ss_pred HHHHH
Q 007400 475 MNQLE 479 (605)
Q Consensus 475 ~~~~~ 479 (605)
++.++
T Consensus 78 i~~l~ 82 (84)
T PF12895_consen 78 IKALE 82 (84)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 55554
No 171
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.79 E-value=0.00089 Score=67.54 Aligned_cols=139 Identities=13% Similarity=0.079 Sum_probs=102.6
Q ss_pred CCcchHHHHHHHHHH--cC---CHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhcc--------CcHHHHHHHHHHchH
Q 007400 382 ENSMLWNTMISALTQ--HG---YDEQAIRLFHDMVRSSVKPDK-ITLAVILNACTHS--------GLVQEGLTYFESMTH 447 (605)
Q Consensus 382 ~~~~~~~~l~~~~~~--~g---~~~~a~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~--------g~~~~a~~~~~~~~~ 447 (605)
.+...|...+++... .+ +...|..+|++.++ ..|+. ..+..+..++... .+...+.+..++...
T Consensus 335 ~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~--ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~a 412 (517)
T PRK10153 335 HQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILK--SEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVA 412 (517)
T ss_pred CCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhh
Confidence 477888888887544 33 36789999999999 67875 4666655554332 123444555554431
Q ss_pred hhCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc
Q 007400 448 DLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKM-PYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSA 522 (605)
Q Consensus 448 ~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 522 (605)
......++..+..+.-.+...|++++|...+++. ...|+...|..++..+...|+.++|.+.|++++.++|.++.
T Consensus 413 l~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 413 LPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred cccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence 1123334677888877777889999999999986 35678889999999999999999999999999999997664
No 172
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.78 E-value=0.0061 Score=55.15 Aligned_cols=82 Identities=12% Similarity=0.086 Sum_probs=49.8
Q ss_pred ChHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhH---HHHHHHhhhcCChhHHHHHHHHHHHhCCCCCchhhHH
Q 007400 16 PNNCLIQSFLSLISKGQLSEAISSLDLLAQRGIRLPAETL---AFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSN 92 (605)
Q Consensus 16 ~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~---~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 92 (605)
+..............|++++|++.|+.+.... +-+..+. ..+..++.+.++++.|...++..++..|..+.. .+.
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~y-P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~-~~a 108 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRY-PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNI-DYV 108 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCch-HHH
Confidence 34444444445666778888888887777643 1122222 334456667777788888887777777776665 554
Q ss_pred HHHHHHH
Q 007400 93 HLISMYF 99 (605)
Q Consensus 93 ~l~~~~~ 99 (605)
..+.+.+
T Consensus 109 ~Y~~g~~ 115 (243)
T PRK10866 109 LYMRGLT 115 (243)
T ss_pred HHHHHHh
Confidence 4554443
No 173
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=97.78 E-value=0.044 Score=53.28 Aligned_cols=206 Identities=11% Similarity=0.111 Sum_probs=139.4
Q ss_pred HHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcC---ChHHHHHHHHhcCCCC---CcchHHHHHHHHHHcCCHHHHHHHH
Q 007400 334 KHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCG---CLNDGRQVFDLTDNKE---NSMLWNTMISALTQHGYDEQAIRLF 407 (605)
Q Consensus 334 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~ 407 (605)
+++..+++..++.-...+..+|..+.+.--..- ..+...+.++++...+ -..+|..++..-.+..-...|..+|
T Consensus 310 ~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF 389 (656)
T KOG1914|consen 310 DEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIF 389 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHH
Confidence 455566665554433334444444443222211 2555556666544321 3456888888888888899999999
Q ss_pred HHHHHCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHchHhhCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhCC---C
Q 007400 408 HDMVRSSVKP-DKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMP---Y 483 (605)
Q Consensus 408 ~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~ 483 (605)
.+..+.+..+ +....++++.-++ .++.+-|.++|+.=.+++|- ++......++.+...++-..|..+|++.. .
T Consensus 390 ~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkkf~d--~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l 466 (656)
T KOG1914|consen 390 KKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKKFGD--SPEYVLKYLDFLSHLNDDNNARALFERVLTSVL 466 (656)
T ss_pred HHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHhcCC--ChHHHHHHHHHHHHhCcchhHHHHHHHHHhccC
Confidence 9999988777 5567777777665 47889999999987744433 34455677888999999999999999873 1
Q ss_pred CC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC----chHHHHHHHHHhcCCchHHHH
Q 007400 484 EH--DSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSS----ATHGLLSSIYSALGKGRLVEK 542 (605)
Q Consensus 484 ~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~----~~~~~l~~~~~~~g~~~~a~~ 542 (605)
.+ ...+|..++..-..-|+...+.++-++.....|.+. ..-..+.+-|.-.+.+.--..
T Consensus 467 ~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~d~~~c~~~ 531 (656)
T KOG1914|consen 467 SADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPADQEYEGNETALFVDRYGILDLYPCSLD 531 (656)
T ss_pred ChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchhhcCCCChHHHHHHHHhhcccccccHH
Confidence 22 357899999999999999999999999888776321 233345566655565554333
No 174
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.72 E-value=0.0005 Score=51.52 Aligned_cols=79 Identities=16% Similarity=0.073 Sum_probs=67.3
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCC-CCChhhHHHHHHHHhccC--------ChHHHHHHHHHHHHhCCCCChhHHH
Q 007400 154 NTMIIGYAKSGAVEEGLKFYKVLRRFSI-SCNEFSFAGILTICVKLE--------ELKLTRQVHGQVLVTGFLSNVVISS 224 (605)
Q Consensus 154 ~~li~~~~~~~~~~~a~~~~~~m~~~~~-~p~~~~~~~ll~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~~~ 224 (605)
...|..+...+++...-.+|+.+++.|+ .|+..+|+.++.+..+.. ..-..+.+|+.|+..+++|+..+|+
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYn 108 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYN 108 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence 4456667777999999999999999999 899999999999877543 2346778999999999999999999
Q ss_pred HHHHHHHh
Q 007400 225 SIVDAYAK 232 (605)
Q Consensus 225 ~l~~~~~~ 232 (605)
.++..+.+
T Consensus 109 ivl~~Llk 116 (120)
T PF08579_consen 109 IVLGSLLK 116 (120)
T ss_pred HHHHHHHH
Confidence 99988765
No 175
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.71 E-value=0.00045 Score=52.24 Aligned_cols=91 Identities=15% Similarity=0.197 Sum_probs=48.2
Q ss_pred HHHHHhccCcHHHHHHHHHHchHhhCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcC
Q 007400 425 ILNACTHSGLVQEGLTYFESMTHDLGIIPN-QEHHACLIELLAQAGCSDQLMNQLEKMP--YEHDSYLWNALHGVCRIHG 501 (605)
Q Consensus 425 l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g 501 (605)
+...+...|++++|...++++. ...|+ ...+..+...+...|++++|.+.+++.. .+.+..++..++..+...|
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 6 LGNLYYKLGDYDEALEYYEKAL---ELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHhcHHHHHHHHHHHH---hcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 3334444455555555555444 11222 2344445555555555555555555431 1223345666666667777
Q ss_pred CHHHHHHHHHHHHhcCC
Q 007400 502 NIDMGRKVVDQLIDQNP 518 (605)
Q Consensus 502 ~~~~A~~~~~~~~~~~p 518 (605)
+++.|...+.++++..|
T Consensus 83 ~~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 83 KYEEALEAYEKALELDP 99 (100)
T ss_pred hHHHHHHHHHHHHccCC
Confidence 77777777777766655
No 176
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.69 E-value=0.046 Score=54.68 Aligned_cols=159 Identities=14% Similarity=0.126 Sum_probs=93.4
Q ss_pred cCChhHHHHHhccCCCCCchHHHHHHHHHHccCChHHHHHHHhhcCCC-----CceeHHHHHHHHHhcCChHHHHHHHHH
Q 007400 101 CGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAER-----DVVSWNTMIIGYAKSGAVEEGLKFYKV 175 (605)
Q Consensus 101 ~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~li~~~~~~~~~~~a~~~~~~ 175 (605)
.|++++|++++-.+.++|. .|....+.|++-...++++.-... -...|+.+...++....|++|.+.|..
T Consensus 747 ~g~feeaek~yld~drrDL-----Aielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~ 821 (1189)
T KOG2041|consen 747 YGEFEEAEKLYLDADRRDL-----AIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSY 821 (1189)
T ss_pred hcchhHhhhhhhccchhhh-----hHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5778888888777776654 355666677777766666653321 124577777777777777777777765
Q ss_pred HHhCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhcCCCCcchHH
Q 007400 176 LRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWT 255 (605)
Q Consensus 176 m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 255 (605)
-.. -...+.++.+..++++-+.+... ++.+....-.+..++.+.|.-++|.+.+-+...+ .
T Consensus 822 ~~~---------~e~~~ecly~le~f~~LE~la~~-----Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~p-----k 882 (1189)
T KOG2041|consen 822 CGD---------TENQIECLYRLELFGELEVLART-----LPEDSELLPVMADMFTSVGMCDQAVEAYLRRSLP-----K 882 (1189)
T ss_pred ccc---------hHhHHHHHHHHHhhhhHHHHHHh-----cCcccchHHHHHHHHHhhchHHHHHHHHHhccCc-----H
Confidence 432 11234444444444444333222 3445555666777777777777777666554433 2
Q ss_pred HHHHHHHhcCChHHHHHHHhhCCCCChh
Q 007400 256 TMVSGYAKLGDMESASKLFNEMPEKNPV 283 (605)
Q Consensus 256 ~li~~~~~~~~~~~A~~~~~~~~~~~~~ 283 (605)
..+..|...++|.+|.++-++..-|.+.
T Consensus 883 aAv~tCv~LnQW~~avelaq~~~l~qv~ 910 (1189)
T KOG2041|consen 883 AAVHTCVELNQWGEAVELAQRFQLPQVQ 910 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccchhHH
Confidence 2344555566677777766666555433
No 177
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.68 E-value=0.019 Score=53.69 Aligned_cols=98 Identities=12% Similarity=0.199 Sum_probs=53.2
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-----hH-HHHHHHHHHhcccchHHHHHHHHHHHHcC--CCCC--hh
Q 007400 284 SWTTLIAGYTRNGLGQKALELFTRMMILRIRPN-----QH-TFSSCLCACASIVSLKHGKQVHGFLIRTN--FRSN--TI 353 (605)
Q Consensus 284 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~-----~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~--~~ 353 (605)
.+..++..+.+.|++++|+++|++....-...+ .. .|...+-++...|++..|...++...... +..+ ..
T Consensus 157 ~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~ 236 (282)
T PF14938_consen 157 CLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYK 236 (282)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHH
Confidence 455667778888888888888888776432221 11 22233335555677777777777766432 2222 23
Q ss_pred HHHHHHHHHHh--cCChHHHHHHHHhcCCC
Q 007400 354 VMSSLIDMYSK--CGCLNDGRQVFDLTDNK 381 (605)
Q Consensus 354 ~~~~l~~~~~~--~g~~~~A~~~~~~~~~~ 381 (605)
+...|+.++-. ...++.+..-|+.+..-
T Consensus 237 ~~~~l~~A~~~~D~e~f~~av~~~d~~~~l 266 (282)
T PF14938_consen 237 FLEDLLEAYEEGDVEAFTEAVAEYDSISRL 266 (282)
T ss_dssp HHHHHHHHHHTT-CCCHHHHCHHHTTSS--
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHcccCcc
Confidence 34445555543 23455555566555544
No 178
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.63 E-value=0.0021 Score=59.81 Aligned_cols=132 Identities=11% Similarity=0.122 Sum_probs=98.1
Q ss_pred chHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HhccCcHHHHHHHHHHchHhhCCCCCHHHHHHHHH
Q 007400 385 MLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNA-CTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIE 463 (605)
Q Consensus 385 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~-~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 463 (605)
.+|..++...-+.+..+.|..+|.+..+.+ ..+...|...+.. +...++.+.|..+|+...+. +..+...+...++
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~--f~~~~~~~~~Y~~ 78 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK--FPSDPDFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH--HTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHH
Confidence 357778888888888899999999988542 2244555555555 33356777799999998854 4445677888889
Q ss_pred HHHhcCChHHHHHHHHhCC-CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 007400 464 LLAQAGCSDQLMNQLEKMP-YEHD----SYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQ 519 (605)
Q Consensus 464 ~~~~~g~~~~A~~~~~~~~-~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 519 (605)
.+.+.|+.+.|..+|++.. .-+. ..+|...+..-.+.|+.+....+.+++.+..|+
T Consensus 79 ~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~ 139 (280)
T PF05843_consen 79 FLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPE 139 (280)
T ss_dssp HHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTT
T ss_pred HHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhh
Confidence 9999999999999999863 1222 358999999999999999999999999999885
No 179
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.63 E-value=7.7e-05 Score=42.58 Aligned_cols=30 Identities=37% Similarity=0.721 Sum_probs=22.1
Q ss_pred eHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 007400 152 SWNTMIIGYAKSGAVEEGLKFYKVLRRFSI 181 (605)
Q Consensus 152 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~ 181 (605)
+|+.++.+|++.|++++|.++|++|.+.|+
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 677777777777777777777777776653
No 180
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.62 E-value=0.0011 Score=53.79 Aligned_cols=86 Identities=8% Similarity=-0.116 Sum_probs=38.5
Q ss_pred HHhccCcHHHHHHHHHHchHhhCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHH
Q 007400 428 ACTHSGLVQEGLTYFESMTHDLGIIPN-QEHHACLIELLAQAGCSDQLMNQLEKMP--YEHDSYLWNALHGVCRIHGNID 504 (605)
Q Consensus 428 ~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~ 504 (605)
.+...|++++|..+|+-+. .+.|. ..-|..|.-++...|++++|++.|.... .+.|+..+..++.++...|+.+
T Consensus 44 ~ly~~G~l~~A~~~f~~L~---~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~lG~~~ 120 (157)
T PRK15363 44 QLMEVKEFAGAARLFQLLT---IYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLACDNVC 120 (157)
T ss_pred HHHHCCCHHHHHHHHHHHH---HhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHH
Confidence 3334444444444444443 22333 3334444444444444444444444431 1233444444455555555555
Q ss_pred HHHHHHHHHHhc
Q 007400 505 MGRKVVDQLIDQ 516 (605)
Q Consensus 505 ~A~~~~~~~~~~ 516 (605)
.|++.|+.++..
T Consensus 121 ~A~~aF~~Ai~~ 132 (157)
T PRK15363 121 YAIKALKAVVRI 132 (157)
T ss_pred HHHHHHHHHHHH
Confidence 555555555544
No 181
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.60 E-value=8.3e-05 Score=52.19 Aligned_cols=61 Identities=21% Similarity=0.303 Sum_probs=34.1
Q ss_pred hcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHH
Q 007400 467 QAGCSDQLMNQLEKMP--YEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLL 527 (605)
Q Consensus 467 ~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 527 (605)
..|++++|++.|+++. .+.+..++..++.+|.+.|++++|.++++++....|+++..+..+
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~ 65 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLL 65 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 4455555555555541 233555555666666666666666666666666666544444433
No 182
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.57 E-value=0.00023 Score=50.08 Aligned_cols=64 Identities=14% Similarity=0.135 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhcCC
Q 007400 455 QEHHACLIELLAQAGCSDQLMNQLEKMP--YEHDSYLWNALHGVCRIHG-NIDMGRKVVDQLIDQNP 518 (605)
Q Consensus 455 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~p 518 (605)
+..|..++..+...|++++|+..|++.. .+.++.+|..++.++...| ++++|++.++++++++|
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 4567777777888888888888887752 2346778888888999998 79999999999999887
No 183
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.55 E-value=0.074 Score=49.75 Aligned_cols=107 Identities=9% Similarity=0.108 Sum_probs=59.5
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-----CHH-HHHHHHHHHhccCcHHHHHHHHHHchHh-hCCCCC--HH
Q 007400 386 LWNTMISALTQHGYDEQAIRLFHDMVRSSVKP-----DKI-TLAVILNACTHSGLVQEGLTYFESMTHD-LGIIPN--QE 456 (605)
Q Consensus 386 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p-----~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~p~--~~ 456 (605)
++..++..+.+.|++++|.++|++.....+.. +.. .|...+-++...||+..|...+++.... .++..+ ..
T Consensus 157 ~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~ 236 (282)
T PF14938_consen 157 CLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYK 236 (282)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHH
Confidence 34556666777888888888888776543221 111 3334444666678888888888877621 123223 33
Q ss_pred HHHHHHHHHHh--cCChHHHHHHHHhCCCCCCHHHHHHH
Q 007400 457 HHACLIELLAQ--AGCSDQLMNQLEKMPYEHDSYLWNAL 493 (605)
Q Consensus 457 ~~~~l~~~~~~--~g~~~~A~~~~~~~~~~~~~~~~~~l 493 (605)
....|+.++.. ...+++++.-|+.+. +.|..--..|
T Consensus 237 ~~~~l~~A~~~~D~e~f~~av~~~d~~~-~ld~w~~~~l 274 (282)
T PF14938_consen 237 FLEDLLEAYEEGDVEAFTEAVAEYDSIS-RLDNWKTKML 274 (282)
T ss_dssp HHHHHHHHHHTT-CCCHHHHCHHHTTSS----HHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHcccC-ccHHHHHHHH
Confidence 55666666644 335677777777776 4454433333
No 184
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.55 E-value=0.00014 Score=45.46 Aligned_cols=42 Identities=19% Similarity=0.338 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHH
Q 007400 488 YLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSS 529 (605)
Q Consensus 488 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 529 (605)
.+|..++.+|...|++++|+++|+++++..|+|+..+..|+.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 467889999999999999999999999999999999988875
No 185
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.54 E-value=0.086 Score=50.24 Aligned_cols=426 Identities=13% Similarity=0.082 Sum_probs=207.6
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCChh------hHHHHHHHhhhcCChhHHHHHHHHHHHhCCCCCchhhHHHHHHHH-
Q 007400 26 SLISKGQLSEAISSLDLLAQRGIRLPAE------TLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMY- 98 (605)
Q Consensus 26 ~~~~~g~~~~a~~~~~~~~~~g~~~~~~------~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~- 98 (605)
.+-+++++.+|..+|.+.-..- .-++. ..+.++++|.. .+.+.....+..+.+..+.. .|-.+..++
T Consensus 15 ~Lqkq~~~~esEkifskI~~e~-~~~~f~lkeEvl~grilnAffl-~nld~Me~~l~~l~~~~~~s----~~l~LF~~L~ 88 (549)
T PF07079_consen 15 ILQKQKKFQESEKIFSKIYDEK-ESSPFLLKEEVLGGRILNAFFL-NNLDLMEKQLMELRQQFGKS----AYLPLFKALV 88 (549)
T ss_pred HHHHHhhhhHHHHHHHHHHHHh-hcchHHHHHHHHhhHHHHHHHH-hhHHHHHHHHHHHHHhcCCc----hHHHHHHHHH
Confidence 4567899999999999986542 22222 23456677754 45676666666666655432 344444433
Q ss_pred -HhcCChhHHHHHhccCCCC------------------CchHHHHHHHHHHccCChHHHHHHHhhcCC--------CCce
Q 007400 99 -FKCGSDVDARKVFDKIPVK------------------NLFSYNNMLSGYANLGMMKHARNLFDNMAE--------RDVV 151 (605)
Q Consensus 99 -~~~g~~~~a~~~~~~~~~~------------------~~~~~~~li~~~~~~~~~~~A~~~~~~~~~--------~~~~ 151 (605)
-+.+.+.+|.+.+...... +...-+..+..+...|++.+++.+++++.. -++.
T Consensus 89 ~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d 168 (549)
T PF07079_consen 89 AYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSD 168 (549)
T ss_pred HHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHH
Confidence 3678888888877665421 122334567788999999999999998862 4778
Q ss_pred eHHHHHHHHHhc--------CCh-------HHHHHHHHHHHhC------CCCCChhhHHHHHHHHhc--cCChHHHHHHH
Q 007400 152 SWNTMIIGYAKS--------GAV-------EEGLKFYKVLRRF------SISCNEFSFAGILTICVK--LEELKLTRQVH 208 (605)
Q Consensus 152 ~~~~li~~~~~~--------~~~-------~~a~~~~~~m~~~------~~~p~~~~~~~ll~~~~~--~~~~~~a~~~~ 208 (605)
+|+.++-.+.++ ... +.+.-..++|... .+.|-...+..++....- .....--.+++
T Consensus 169 ~yd~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l 248 (549)
T PF07079_consen 169 MYDRAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQIL 248 (549)
T ss_pred HHHHHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHH
Confidence 888766555442 111 1222222222211 122333333333322211 11112222222
Q ss_pred HHHHHhCCCCChh-HHHHHHHHHHhcCChHHHHHHHhhcCCCCcchHHHHHHHHHhcCChHHHHHHH--hhCCCCChhhH
Q 007400 209 GQVLVTGFLSNVV-ISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLF--NEMPEKNPVSW 285 (605)
Q Consensus 209 ~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~--~~~~~~~~~~~ 285 (605)
+.....-+.|+-. +...|..-+.. +.+++..+.+.+ ..+ +.+.+.=+.++
T Consensus 249 ~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~i-------------------------a~~~i~~Lke~li~~F 301 (549)
T PF07079_consen 249 ENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAI-------------------------ASSKIEKLKEELIDRF 301 (549)
T ss_pred HHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHH-------------------------HHHhHHHHHHHHHHHH
Confidence 2222222333221 11222222222 222222222221 111 11112234456
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHCCCCCChHHHHHHH-------HHHh-cccch---HHHHHHHHHHHHcCCCCChhH
Q 007400 286 TTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCL-------CACA-SIVSL---KHGKQVHGFLIRTNFRSNTIV 354 (605)
Q Consensus 286 ~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll-------~~~~-~~~~~---~~a~~~~~~~~~~~~~~~~~~ 354 (605)
..++....+.++...|-+.+.-+... .|+...-.-++ ...+ ...+. ..-..+|..+...++.. ...
T Consensus 302 ~~~Ls~~Vk~~~T~~a~q~l~lL~~l--dp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDr-qQL 378 (549)
T PF07079_consen 302 GNLLSFKVKQVQTEEAKQYLALLKIL--DPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDR-QQL 378 (549)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHhc--CCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccH-HHH
Confidence 67777777788888877777666552 34333211111 1111 11111 11222333333332211 111
Q ss_pred HHHH---HHHHHhcCC-hHHHHHHHHhcCC--CCCcchHHHHH----HHHHH---cCCHHHHHHHHHHHHHCCCCCCH--
Q 007400 355 MSSL---IDMYSKCGC-LNDGRQVFDLTDN--KENSMLWNTMI----SALTQ---HGYDEQAIRLFHDMVRSSVKPDK-- 419 (605)
Q Consensus 355 ~~~l---~~~~~~~g~-~~~A~~~~~~~~~--~~~~~~~~~l~----~~~~~---~g~~~~a~~~~~~m~~~~~~p~~-- 419 (605)
..-| ..-+.+.|. -++|.++++.+.. .-|..+-|... ..|.+ ...+.+-..+-.-..+.|++|-.
T Consensus 379 vh~L~~~Ak~lW~~g~~dekalnLLk~il~ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~ 458 (549)
T PF07079_consen 379 VHYLVFGAKHLWEIGQCDEKALNLLKLILQFTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITIS 458 (549)
T ss_pred HHHHHHHHHHHHhcCCccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCccccc
Confidence 1122 223444454 6667777765542 11333222221 12222 12233333444444556666532
Q ss_pred --HHHHHHHHH--HhccCcHHHHHHHHHHchHhhCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHH
Q 007400 420 --ITLAVILNA--CTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNA 492 (605)
Q Consensus 420 --~~~~~l~~~--~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 492 (605)
..-+.|.+| +...|++..+.-.-.-+. .+.|++.+|..++-++....++++|.+.+.+++ |+..+++.
T Consensus 459 e~eian~LaDAEyLysqgey~kc~~ys~WL~---~iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~LP--~n~~~~ds 530 (549)
T PF07079_consen 459 EEEIANFLADAEYLYSQGEYHKCYLYSSWLT---KIAPSPQAYRLLGLCLMENKRYQEAWEYLQKLP--PNERMRDS 530 (549)
T ss_pred HHHHHHHHHHHHHHHhcccHHHHHHHHHHHH---HhCCcHHHHHHHHHHHHHHhhHHHHHHHHHhCC--CchhhHHH
Confidence 344444444 345677777765554444 567777777777777777778888888887777 45555543
No 186
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.53 E-value=5.9e-05 Score=43.80 Aligned_cols=34 Identities=18% Similarity=0.247 Sum_probs=31.4
Q ss_pred HHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHH
Q 007400 509 VVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEK 542 (605)
Q Consensus 509 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 542 (605)
+|+++++++|+++.+|..|+.+|...|++++|++
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 3789999999999999999999999999999863
No 187
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.52 E-value=0.0011 Score=51.85 Aligned_cols=89 Identities=12% Similarity=0.073 Sum_probs=61.3
Q ss_pred HHHHHHHhcCChHHHHHHHHhCC---CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC---CCchHHHHHHHH
Q 007400 460 CLIELLAQAGCSDQLMNQLEKMP---YEH--DSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQ---SSATHGLLSSIY 531 (605)
Q Consensus 460 ~l~~~~~~~g~~~~A~~~~~~~~---~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~---~~~~~~~l~~~~ 531 (605)
.+..++-..|+.++|+.+|++.. ... -...+-.++..+...|++++|+.++++.+...|+ +......++.++
T Consensus 6 ~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L 85 (120)
T PF12688_consen 6 ELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALAL 85 (120)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHH
Confidence 34556666777777777776541 111 1335556777888888888888888888887776 566666777888
Q ss_pred HhcCCchHHHHHHHHHH
Q 007400 532 SALGKGRLVEKVRQLIN 548 (605)
Q Consensus 532 ~~~g~~~~a~~~~~~~~ 548 (605)
...|+.++|++.+-...
T Consensus 86 ~~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 86 YNLGRPKEALEWLLEAL 102 (120)
T ss_pred HHCCCHHHHHHHHHHHH
Confidence 88888888877765443
No 188
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.52 E-value=0.0016 Score=48.83 Aligned_cols=81 Identities=14% Similarity=0.062 Sum_probs=68.5
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHCCC-CCChHHHHHHHHHHhccc--------chHHHHHHHHHHHHcCCCCChhH
Q 007400 284 SWTTLIAGYTRNGLGQKALELFTRMMILRI-RPNQHTFSSCLCACASIV--------SLKHGKQVHGFLIRTNFRSNTIV 354 (605)
Q Consensus 284 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~-~p~~~~~~~ll~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~ 354 (605)
+....|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. +......+|+.++..+++|+..+
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~et 106 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDET 106 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHH
Confidence 345567777788999999999999999999 999999999999887643 34566789999999999999999
Q ss_pred HHHHHHHHHh
Q 007400 355 MSSLIDMYSK 364 (605)
Q Consensus 355 ~~~l~~~~~~ 364 (605)
|+.++..+.+
T Consensus 107 Ynivl~~Llk 116 (120)
T PF08579_consen 107 YNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHH
Confidence 9999887765
No 189
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.51 E-value=0.016 Score=54.86 Aligned_cols=166 Identities=14% Similarity=0.150 Sum_probs=104.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhcCCCCCcc------hHHHHHHHHHH---cCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 007400 354 VMSSLIDMYSKCGCLNDGRQVFDLTDNKENSM------LWNTMISALTQ---HGYDEQAIRLFHDMVRSSVKPDKITLAV 424 (605)
Q Consensus 354 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~------~~~~l~~~~~~---~g~~~~a~~~~~~m~~~~~~p~~~~~~~ 424 (605)
+...++-.|....+++..+++++.+...|+.. .-...+-++-+ .|+.++|+.++..++...-.+++.++..
T Consensus 143 iv~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL 222 (374)
T PF13281_consen 143 IVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGL 222 (374)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHH
Confidence 33455556777888888888888777554321 11223344555 7888889988888666556777888888
Q ss_pred HHHHHhc---------cCcHHHHHHHHHHchHhhCCCCCHHHHHHHHHHHHhcCChH----HHHHHH---H----h-C--
Q 007400 425 ILNACTH---------SGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSD----QLMNQL---E----K-M-- 481 (605)
Q Consensus 425 l~~~~~~---------~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~----~A~~~~---~----~-~-- 481 (605)
+.+.|-. ....+.|+..|.+.- .+.|+...--.++..+.-.|... +..++- . + -
T Consensus 223 ~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgF---e~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~ 299 (374)
T PF13281_consen 223 LGRIYKDLFLESNFTDRESLDKAIEWYRKGF---EIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSL 299 (374)
T ss_pred HHHHHHHHHHHcCccchHHHHHHHHHHHHHH---cCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccc
Confidence 7776532 234677888887765 45566443333333444444322 222221 1 1 0
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc
Q 007400 482 PYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSA 522 (605)
Q Consensus 482 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 522 (605)
....+-..+.+++.++.-.|+++.|.+.+++++.+.|+...
T Consensus 300 ~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W~ 340 (374)
T PF13281_consen 300 EKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAWE 340 (374)
T ss_pred cccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcchh
Confidence 12244555567899999999999999999999999875443
No 190
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.51 E-value=0.037 Score=54.80 Aligned_cols=52 Identities=19% Similarity=0.145 Sum_probs=29.3
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHchHhhCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhCC
Q 007400 421 TLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMP 482 (605)
Q Consensus 421 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 482 (605)
+...+..-+.+...+..|-++|..|- + ...+++.....+++++|..+-++.+
T Consensus 749 ~l~~~a~ylk~l~~~gLAaeIF~k~g-D---------~ksiVqlHve~~~W~eAFalAe~hP 800 (1081)
T KOG1538|consen 749 PLLLCATYLKKLDSPGLAAEIFLKMG-D---------LKSLVQLHVETQRWDEAFALAEKHP 800 (1081)
T ss_pred HHHHHHHHHhhccccchHHHHHHHhc-c---------HHHHhhheeecccchHhHhhhhhCc
Confidence 44444444444555566666666654 1 1235556666677777777766664
No 191
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.51 E-value=0.00016 Score=41.29 Aligned_cols=31 Identities=26% Similarity=0.518 Sum_probs=23.4
Q ss_pred chHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 007400 385 MLWNTMISALTQHGYDEQAIRLFHDMVRSSV 415 (605)
Q Consensus 385 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 415 (605)
++|++++++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 3677788888888888888888888777653
No 192
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.50 E-value=0.024 Score=53.07 Aligned_cols=86 Identities=7% Similarity=-0.001 Sum_probs=55.9
Q ss_pred HhccCcHHHHHHHHHHchHhhCCCCC-----HHHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHH---HHHHHHHHHHhc
Q 007400 429 CTHSGLVQEGLTYFESMTHDLGIIPN-----QEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSY---LWNALHGVCRIH 500 (605)
Q Consensus 429 ~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~l~~~~~~~ 500 (605)
..+.|++..|.+.|.+.+ ++.|+ ...|.....+..+.|+..+|+.-.++.. ..|.. .+..-+.++...
T Consensus 259 ~fk~G~y~~A~E~Yteal---~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al-~iD~syikall~ra~c~l~l 334 (486)
T KOG0550|consen 259 AFKNGNYRKAYECYTEAL---NIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEAL-KIDSSYIKALLRRANCHLAL 334 (486)
T ss_pred HhhccchhHHHHHHHHhh---cCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhh-hcCHHHHHHHHHHHHHHHHH
Confidence 345677777777777776 44443 4556666667777888888887776654 23332 233334455666
Q ss_pred CCHHHHHHHHHHHHhcCC
Q 007400 501 GNIDMGRKVVDQLIDQNP 518 (605)
Q Consensus 501 g~~~~A~~~~~~~~~~~p 518 (605)
+++++|++-|+++.+...
T Consensus 335 e~~e~AV~d~~~a~q~~~ 352 (486)
T KOG0550|consen 335 EKWEEAVEDYEKAMQLEK 352 (486)
T ss_pred HHHHHHHHHHHHHHhhcc
Confidence 788888888888887744
No 193
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.48 E-value=0.1 Score=49.72 Aligned_cols=190 Identities=11% Similarity=0.034 Sum_probs=106.5
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhcCCC-CCcch-------HHHHHHHHH----HcCCHHHHHHHHHHHHHCCCCCCHH
Q 007400 353 IVMSSLIDMYSKCGCLNDGRQVFDLTDNK-ENSML-------WNTMISALT----QHGYDEQAIRLFHDMVRSSVKPDKI 420 (605)
Q Consensus 353 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~-------~~~l~~~~~----~~g~~~~a~~~~~~m~~~~~~p~~~ 420 (605)
.++..++....+.++...|.+.+.-+..- |+... -..+-+..+ ..-+...-+.+|+...... .|..
T Consensus 299 ~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ldp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~D--iDrq 376 (549)
T PF07079_consen 299 DRFGNLLSFKVKQVQTEEAKQYLALLKILDPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYD--IDRQ 376 (549)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhc--ccHH
Confidence 34566666667777777776666543311 11110 111111111 1112233345566665532 3332
Q ss_pred -HHHHHHH---HHhccCc-HHHHHHHHHHchHhhCCCCC-HHHHHHHH----HHHHhc---CChH---HHHHHHHhCCCC
Q 007400 421 -TLAVILN---ACTHSGL-VQEGLTYFESMTHDLGIIPN-QEHHACLI----ELLAQA---GCSD---QLMNQLEKMPYE 484 (605)
Q Consensus 421 -~~~~l~~---~~~~~g~-~~~a~~~~~~~~~~~~~~p~-~~~~~~l~----~~~~~~---g~~~---~A~~~~~~~~~~ 484 (605)
....++. -+.+.|. -+.|+.+++.+. .+.|. ...-+.+. .+|... ..+. +-...+++.+.+
T Consensus 377 QLvh~L~~~Ak~lW~~g~~dekalnLLk~il---~ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~ 453 (549)
T PF07079_consen 377 QLVHYLVFGAKHLWEIGQCDEKALNLLKLIL---QFTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLT 453 (549)
T ss_pred HHHHHHHHHHHHHHhcCCccHHHHHHHHHHH---HhccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCC
Confidence 2222322 2444554 778888888877 33443 22222221 222221 1222 223344455443
Q ss_pred C----CHHHHHHHHHH--HHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHH
Q 007400 485 H----DSYLWNALHGV--CRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLIN 548 (605)
Q Consensus 485 ~----~~~~~~~l~~~--~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 548 (605)
| +...-+.|..+ +..+|++.++.-.-.-..+..| ++.+|..+|-++....+|++|..++..+.
T Consensus 454 ~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~LP 522 (549)
T PF07079_consen 454 PITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKLP 522 (549)
T ss_pred cccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhCC
Confidence 3 34455666554 4678999999988888888899 99999999999999999999999998663
No 194
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=97.45 E-value=0.00062 Score=65.02 Aligned_cols=67 Identities=7% Similarity=-0.061 Sum_probs=55.4
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCch---HHHHHHHHHhcCCchHHHHHHHHHHhC
Q 007400 484 EHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSAT---HGLLSSIYSALGKGRLVEKVRQLINER 550 (605)
Q Consensus 484 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~---~~~l~~~~~~~g~~~~a~~~~~~~~~~ 550 (605)
+.+...|+.++.+|...|++++|+..|+++++++|++... |+.++.+|...|+.++|+..+++..+.
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3457788888888888888888888888888888877744 888888888888888888888888774
No 195
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.43 E-value=0.0012 Score=60.09 Aligned_cols=93 Identities=14% Similarity=0.096 Sum_probs=57.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhCC-CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC---CchHHHHHH
Q 007400 458 HACLIELLAQAGCSDQLMNQLEKMP-YEHD----SYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQS---SATHGLLSS 529 (605)
Q Consensus 458 ~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~---~~~~~~l~~ 529 (605)
|..-...+.+.|++++|...|+.+. ..|+ +.++.-++.+|...|++++|...|+++++..|++ +.++..++.
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~ 225 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGV 225 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHH
Confidence 3333333344566666666665541 1122 2355556777777777777777777777776654 344555677
Q ss_pred HHHhcCCchHHHHHHHHHHhC
Q 007400 530 IYSALGKGRLVEKVRQLINER 550 (605)
Q Consensus 530 ~~~~~g~~~~a~~~~~~~~~~ 550 (605)
++...|++++|..+++.+.+.
T Consensus 226 ~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 226 IMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHcCCHHHHHHHHHHHHHH
Confidence 777777777777777777653
No 196
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.42 E-value=0.028 Score=46.49 Aligned_cols=123 Identities=11% Similarity=0.021 Sum_probs=57.3
Q ss_pred CCChHHHHHHHHHHhcccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCCC-C---CcchHHH
Q 007400 314 RPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNK-E---NSMLWNT 389 (605)
Q Consensus 314 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~---~~~~~~~ 389 (605)
.|+...-..+..++...|+..+|...|++...--+-.|..+...+.++....+++..|...++.+.+- | ++.+.-.
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll 165 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLL 165 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHH
Confidence 44444444455555555555555555555554444444444444555555555555555555443321 1 2223334
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHH
Q 007400 390 MISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEG 438 (605)
Q Consensus 390 l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a 438 (605)
+.+.+...|++..|..-|+.... ..|+...-......+.+.|+.+++
T Consensus 166 ~aR~laa~g~~a~Aesafe~a~~--~ypg~~ar~~Y~e~La~qgr~~ea 212 (251)
T COG4700 166 FARTLAAQGKYADAESAFEVAIS--YYPGPQARIYYAEMLAKQGRLREA 212 (251)
T ss_pred HHHHHHhcCCchhHHHHHHHHHH--hCCCHHHHHHHHHHHHHhcchhHH
Confidence 44445555555555555555554 344443333333334444443333
No 197
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.39 E-value=0.00027 Score=51.21 Aligned_cols=61 Identities=21% Similarity=0.149 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhc---CC----CCCchHHHHHHHHHhcCCchHHHHHHHHHH
Q 007400 488 YLWNALHGVCRIHGNIDMGRKVVDQLIDQ---NP----QSSATHGLLSSIYSALGKGRLVEKVRQLIN 548 (605)
Q Consensus 488 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~p----~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 548 (605)
.+++.++.+|...|++++|++.|+++++. .+ .-..++..++.++...|++++|++++++..
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 45667777777888888888888877765 22 124566678888888888888888877664
No 198
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.39 E-value=0.0042 Score=52.98 Aligned_cols=61 Identities=16% Similarity=0.153 Sum_probs=28.7
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHhccCcHHHHHHHHHHch
Q 007400 386 LWNTMISALTQHGYDEQAIRLFHDMVRSSVKPD--KITLAVILNACTHSGLVQEGLTYFESMT 446 (605)
Q Consensus 386 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 446 (605)
.|..++..+...|++++|+..|++.......|. ..++..+..++...|++++|+..+++..
T Consensus 37 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al 99 (168)
T CHL00033 37 TYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQAL 99 (168)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 344444445555555555555555544211111 1244444455555555555555555544
No 199
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.38 E-value=0.0054 Score=57.03 Aligned_cols=141 Identities=15% Similarity=0.211 Sum_probs=91.2
Q ss_pred hhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChHHHHHHHHH-HhcccchHHHHHHHHHHHHcCCCCChhHHHHHHHH
Q 007400 283 VSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCA-CASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDM 361 (605)
Q Consensus 283 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 361 (605)
.+|..++....+.+..+.|..+|.+..+.+ ..+...|...... +...++.+.|..+|+...+. ++.+...+...++.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 356777777777777888888888877532 3344445444444 22345666688888887765 36677777888888
Q ss_pred HHhcCChHHHHHHHHhcCCC-CCc----chHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 007400 362 YSKCGCLNDGRQVFDLTDNK-ENS----MLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILN 427 (605)
Q Consensus 362 ~~~~g~~~~A~~~~~~~~~~-~~~----~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~ 427 (605)
+.+.|+.+.|+.+|+..... +.. ..|...+..-.+.|+.+.+..+.+++.+ ..|+...+..++.
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~--~~~~~~~~~~f~~ 148 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE--LFPEDNSLELFSD 148 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH--HTTTS-HHHHHHC
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HhhhhhHHHHHHH
Confidence 88888888888888875543 222 3677788877888888888888888777 4555444444443
No 200
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.36 E-value=0.003 Score=61.11 Aligned_cols=122 Identities=11% Similarity=0.048 Sum_probs=86.9
Q ss_pred CCCCCChHHHHHHHHHHhcccchHHHHHHHHHHHHc--CCCCChhHHHHHHHHHHhcCChHHHHHHHHhcC---CCCCcc
Q 007400 311 LRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRT--NFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTD---NKENSM 385 (605)
Q Consensus 311 ~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~ 385 (605)
.+.+.+...+..++..+....+++.+..++-..... ....-+.+..++++.|.+.|..+.+.++++.=. -=||..
T Consensus 60 ~~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~ 139 (429)
T PF10037_consen 60 RKKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNF 139 (429)
T ss_pred cCCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChh
Confidence 345667777888888888888888888888877765 333334555678888888888888887776433 226778
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc
Q 007400 386 LWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHS 432 (605)
Q Consensus 386 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 432 (605)
+++.++..+.+.|++..|.++.-.|...+...+..|+...+.+|.+.
T Consensus 140 s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 140 SFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred hHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 88888888888888888888777777666666666666666666554
No 201
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.33 E-value=0.15 Score=48.11 Aligned_cols=122 Identities=15% Similarity=0.170 Sum_probs=86.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhcCCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC
Q 007400 354 VMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSG 433 (605)
Q Consensus 354 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g 433 (605)
+.+..+.-+...|+...|.++-.+...+ +..-|...+.+++..++|++-..+... +-++.-|..++.+|.+.|
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fkv~-dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~ 251 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFKVP-DKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYG 251 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcCCc-HHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCC
Confidence 3344456667778888888888777665 888888899999999999877665432 224577888888888889
Q ss_pred cHHHHHHHHHHchHhhCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHH
Q 007400 434 LVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGV 496 (605)
Q Consensus 434 ~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~ 496 (605)
+..+|..+..++. +..-+..|.++|++.+|.+.--+.. |...+..+...
T Consensus 252 ~~~eA~~yI~k~~-----------~~~rv~~y~~~~~~~~A~~~A~~~k---d~~~L~~i~~~ 300 (319)
T PF04840_consen 252 NKKEASKYIPKIP-----------DEERVEMYLKCGDYKEAAQEAFKEK---DIDLLKQILKR 300 (319)
T ss_pred CHHHHHHHHHhCC-----------hHHHHHHHHHCCCHHHHHHHHHHcC---CHHHHHHHHHH
Confidence 9888888887643 1344677888888888887766544 44444444333
No 202
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.32 E-value=0.28 Score=51.01 Aligned_cols=449 Identities=11% Similarity=0.124 Sum_probs=215.1
Q ss_pred hcCChhHHHHHHHHHHHhCCCCCchhhHHHHHHHH--HhcCChhHHHHHhccCCC---CCchHHHHHHHHHHccCChHHH
Q 007400 64 ESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMY--FKCGSDVDARKVFDKIPV---KNLFSYNNMLSGYANLGMMKHA 138 (605)
Q Consensus 64 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A 138 (605)
..+++..|.+....+.+..|.. .|...+.++ .+.|+.++|..+++.... .|..|...+-..|...+..++|
T Consensus 21 d~~qfkkal~~~~kllkk~Pn~----~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~ 96 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKKHPNA----LYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEA 96 (932)
T ss_pred hhHHHHHHHHHHHHHHHHCCCc----HHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHH
Confidence 5567888999888888886444 344555544 577888998888887753 3566777788888888888888
Q ss_pred HHHHhhcCC--CCceeHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccC-C---------hHHHHH
Q 007400 139 RNLFDNMAE--RDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLE-E---------LKLTRQ 206 (605)
Q Consensus 139 ~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~-~---------~~~a~~ 206 (605)
..+|++... |+......+..+|.+-+++.+-.+.--+|-+ ..+-++..|=++++...... . ..-|.+
T Consensus 97 ~~~Ye~~~~~~P~eell~~lFmayvR~~~yk~qQkaa~~LyK-~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~ 175 (932)
T KOG2053|consen 97 VHLYERANQKYPSEELLYHLFMAYVREKSYKKQQKAALQLYK-NFPKRAYYFWSVISLILQSIFSENELLDPILLALAEK 175 (932)
T ss_pred HHHHHHHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCcccchHHHHHHHHHHhccCCcccccchhHHHHHH
Confidence 888888775 4433444445566666666544433333332 22234444445554433211 1 123344
Q ss_pred HHHHHHHhC-CCCChhHHHHHHHHHHhcCChHHHHHHHhh-cCC----CCcchHHHHHHHHHhcCChHHHHHHHhhCCCC
Q 007400 207 VHGQVLVTG-FLSNVVISSSIVDAYAKCGELSDARRLFDE-TDA----RDVLTWTTMVSGYAKLGDMESASKLFNEMPEK 280 (605)
Q Consensus 207 ~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~-~~~----~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~ 280 (605)
..+.+++.+ ..-+..-...-...+...|++++|.+++.. ..+ .+...-+.-+..+...+++.+..++-.++..+
T Consensus 176 m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k 255 (932)
T KOG2053|consen 176 MVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEK 255 (932)
T ss_pred HHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHh
Confidence 444444433 111111112222334445666666655521 111 12222233334444444544444444433322
Q ss_pred ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhcccchHHHHHHHHHHHHcCCCCChhHHHHHHH
Q 007400 281 NPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLID 360 (605)
Q Consensus 281 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 360 (605)
+..-|...+.. +++-+......|-... ....+..+...+......... ....|-+-+.
T Consensus 256 ~~Ddy~~~~~s------------v~klLe~~~~~~a~~~-------~s~~~~l~~~~ek~~~~i~~~---~Rgp~LA~le 313 (932)
T KOG2053|consen 256 GNDDYKIYTDS------------VFKLLELLNKEPAEAA-------HSLSKSLDECIEKAQKNIGSK---SRGPYLARLE 313 (932)
T ss_pred CCcchHHHHHH------------HHHHHHhcccccchhh-------hhhhhhHHHHHHHHHHhhccc---ccCcHHHHHH
Confidence 11112211111 0000000000000000 000111111111111111110 1111111122
Q ss_pred HH---HhcCChHHHHHHH-HhcCCCC------------------------------Ccc-------hHHHHHHHHHHcC-
Q 007400 361 MY---SKCGCLNDGRQVF-DLTDNKE------------------------------NSM-------LWNTMISALTQHG- 398 (605)
Q Consensus 361 ~~---~~~g~~~~A~~~~-~~~~~~~------------------------------~~~-------~~~~l~~~~~~~g- 398 (605)
++ ..-|+.+++...| +....+| +.. .+...+..-...|
T Consensus 314 l~kr~~~~gd~ee~~~~y~~kfg~kpcc~~Dl~~yl~~l~~~q~~~l~~~l~~~~~~~s~~~k~l~~h~c~l~~~rl~G~ 393 (932)
T KOG2053|consen 314 LDKRYKLIGDSEEMLSYYFKKFGDKPCCAIDLNHYLGHLNIDQLKSLMSKLVLADDDSSGDEKVLQQHLCVLLLLRLLGL 393 (932)
T ss_pred HHHHhcccCChHHHHHHHHHHhCCCcHhHhhHHHhhccCCHHHHHHHHHHhhccCCcchhhHHHHHHHHHHHHHHHHhhc
Confidence 21 1234444433222 2222111 111 0111111111223
Q ss_pred ----CHHHHHHHHHHHH---HCC------CCCCHH---------HHHHHHHHHhccCcHH---HHHHHHHHchHhhCCCC
Q 007400 399 ----YDEQAIRLFHDMV---RSS------VKPDKI---------TLAVILNACTHSGLVQ---EGLTYFESMTHDLGIIP 453 (605)
Q Consensus 399 ----~~~~a~~~~~~m~---~~~------~~p~~~---------~~~~l~~~~~~~g~~~---~a~~~~~~~~~~~~~~p 453 (605)
..+....++++.. +.| +-|+.. +.+.++..+.+.++.. +|+-+++... ...|
T Consensus 394 ~~~l~ad~i~a~~~kl~~~ye~gls~~K~ll~TE~~~g~~~llLav~~Lid~~rktnd~~~l~eaI~LLE~gl---t~s~ 470 (932)
T KOG2053|consen 394 YEKLPADSILAYVRKLKLTYEKGLSLSKDLLPTEYSFGDELLLLAVNHLIDLWRKTNDLTDLFEAITLLENGL---TKSP 470 (932)
T ss_pred cccCChHHHHHHHHHHHHHHhccccccccccccccccHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh---hcCC
Confidence 1233333333322 222 333332 3456677788887765 4555555544 2233
Q ss_pred -CHHHHHHHHHHHHhcCChHHHHHHHHhCC---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHH
Q 007400 454 -NQEHHACLIELLAQAGCSDQLMNQLEKMP---YEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSS 529 (605)
Q Consensus 454 -~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 529 (605)
|..+--.+++.|.-.|-+..|.++|+.+. ++.|...+. +...+...|++..+...+...+...-++..-.-.++.
T Consensus 471 hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DTlgh~-~~~~~~t~g~~~~~s~~~~~~lkfy~~~~kE~~eyI~ 549 (932)
T KOG2053|consen 471 HNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTDTLGHL-IFRRAETSGRSSFASNTFNEHLKFYDSSLKETPEYIA 549 (932)
T ss_pred ccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhccchHH-HHHHHHhcccchhHHHHHHHHHHHHhhhhhhhHHHHH
Confidence 34555678888999999999999999885 334444443 3345566789999999999988874434333334444
Q ss_pred HHHhcCCchHHHHH
Q 007400 530 IYSALGKGRLVEKV 543 (605)
Q Consensus 530 ~~~~~g~~~~a~~~ 543 (605)
.-.+.|.+.+..+.
T Consensus 550 ~AYr~g~ySkI~em 563 (932)
T KOG2053|consen 550 LAYRRGAYSKIPEM 563 (932)
T ss_pred HHHHcCchhhhHHH
Confidence 44566777776654
No 203
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.31 E-value=0.0048 Score=48.31 Aligned_cols=110 Identities=14% Similarity=0.027 Sum_probs=75.3
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHcCCCCC--hhhHHHHHHHhhhcCChhHHHHHHHHHHHhCCCCCc-hhhHHHHHHH
Q 007400 21 IQSFLSLISKGQLSEAISSLDLLAQRGIRLP--AETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPT-TFLSNHLISM 97 (605)
Q Consensus 21 ~~~~~~~~~~g~~~~a~~~~~~~~~~g~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~ 97 (605)
+..-..+-..|+.++|+.+|++..+.|...+ ...+..+...+...|++++|..+++......+..+. ......+..+
T Consensus 5 ~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~ 84 (120)
T PF12688_consen 5 YELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALA 84 (120)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHH
Confidence 3333455567999999999999999886554 346667778888999999999999999887654211 1122234446
Q ss_pred HHhcCChhHHHHHhccCCCCCchHHHHHHHHHH
Q 007400 98 YFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYA 130 (605)
Q Consensus 98 ~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~ 130 (605)
+...|+.++|.+++-...-++...|..-|..|+
T Consensus 85 L~~~gr~~eAl~~~l~~la~~~~~y~ra~~~ya 117 (120)
T PF12688_consen 85 LYNLGRPKEALEWLLEALAETLPRYRRAIRFYA 117 (120)
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 778899999988776554444444544444443
No 204
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.31 E-value=0.0038 Score=56.90 Aligned_cols=102 Identities=10% Similarity=0.098 Sum_probs=66.2
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHchHhhCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHhCC-----CCCCHHHHHHHH
Q 007400 421 TLAVILNACTHSGLVQEGLTYFESMTHDLGIIPN-QEHHACLIELLAQAGCSDQLMNQLEKMP-----YEHDSYLWNALH 494 (605)
Q Consensus 421 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~~l~ 494 (605)
.|...+....+.|++++|...|+.+.+.+.-.+- ...+..++.+|...|++++|...|+++. .+.....+..++
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg 224 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVG 224 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHH
Confidence 3444443344556777777777777633211110 2456667777777777777777776652 112345566677
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCCc
Q 007400 495 GVCRIHGNIDMGRKVVDQLIDQNPQSSA 522 (605)
Q Consensus 495 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 522 (605)
..+...|+.+.|..+|+++++..|++..
T Consensus 225 ~~~~~~g~~~~A~~~~~~vi~~yP~s~~ 252 (263)
T PRK10803 225 VIMQDKGDTAKAKAVYQQVIKKYPGTDG 252 (263)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCcCCHH
Confidence 7888899999999999999999996554
No 205
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.31 E-value=0.0018 Score=55.22 Aligned_cols=97 Identities=12% Similarity=0.206 Sum_probs=77.1
Q ss_pred HHHHhhc--CCCCceeHHHHHHHHHh-----cCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcc-------------
Q 007400 139 RNLFDNM--AERDVVSWNTMIIGYAK-----SGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKL------------- 198 (605)
Q Consensus 139 ~~~~~~~--~~~~~~~~~~li~~~~~-----~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~------------- 198 (605)
...|+.. ..+|-.+|..++..|.+ .|..+-....++.|.+.|+.-|..+|+.||+.+=+.
T Consensus 34 ~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~ 113 (228)
T PF06239_consen 34 EELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFM 113 (228)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhc
Confidence 3444444 34666777777777764 478888888999999999999999999999887542
Q ss_pred ---CChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCC
Q 007400 199 ---EELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGE 235 (605)
Q Consensus 199 ---~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 235 (605)
.+-+-|.+++++|...|+.||..++..|++++++.+.
T Consensus 114 hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 114 HYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred cCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 2346788999999999999999999999999977665
No 206
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.29 E-value=0.0039 Score=60.35 Aligned_cols=116 Identities=12% Similarity=0.149 Sum_probs=89.0
Q ss_pred CchHHHHHHHHHHccCChHHHHHHHhhcCC-C-----CceeHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHH
Q 007400 118 NLFSYNNMLSGYANLGMMKHARNLFDNMAE-R-----DVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGI 191 (605)
Q Consensus 118 ~~~~~~~li~~~~~~~~~~~A~~~~~~~~~-~-----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l 191 (605)
+......+++.+....+++.+..++-+... | -..|.+++|+.|.+.|..+.++++++.=...|+-||..+++.+
T Consensus 65 S~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~L 144 (429)
T PF10037_consen 65 SSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLL 144 (429)
T ss_pred cHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHH
Confidence 334555666666666777777777776653 1 2346678899999999999999999888889999999999999
Q ss_pred HHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhc
Q 007400 192 LTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKC 233 (605)
Q Consensus 192 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 233 (605)
|..+.+.|++..|.++...|...+...+..++..-+.++.+.
T Consensus 145 md~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 145 MDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 999999999999999988888877666666666555555554
No 207
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.25 E-value=0.0011 Score=47.15 Aligned_cols=65 Identities=14% Similarity=0.209 Sum_probs=52.6
Q ss_pred HHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHH
Q 007400 462 IELLAQAGCSDQLMNQLEKMP--YEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGL 526 (605)
Q Consensus 462 ~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 526 (605)
...|.+.+++++|.++++++- .+.++..|...+.++...|++++|.+.++++++..|+++.....
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~ 68 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARAL 68 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHH
Confidence 356788889999998888862 34567788888999999999999999999999999976665443
No 208
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.21 E-value=0.2 Score=47.22 Aligned_cols=109 Identities=17% Similarity=0.105 Sum_probs=75.8
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHchHhhCCCCCHHHHHHHHHHH
Q 007400 386 LWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELL 465 (605)
Q Consensus 386 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~ 465 (605)
+.+..+.-+...|+...|.++-.+. --|+..-|...+.+++..++|++-..+-.. .-++..|...+.++
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~F----kv~dkrfw~lki~aLa~~~~w~eL~~fa~s-------kKsPIGyepFv~~~ 247 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEF----KVPDKRFWWLKIKALAENKDWDELEKFAKS-------KKSPIGYEPFVEAC 247 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHc----CCcHHHHHHHHHHHHHhcCCHHHHHHHHhC-------CCCCCChHHHHHHH
Confidence 4455566677788888777775554 236778888888888888888877665432 12345677778888
Q ss_pred HhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 007400 466 AQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQ 512 (605)
Q Consensus 466 ~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 512 (605)
.+.|+..+|..++.+++ +..-+..|.+.|++.+|.+...+
T Consensus 248 ~~~~~~~eA~~yI~k~~-------~~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 248 LKYGNKKEASKYIPKIP-------DEERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred HHCCCHHHHHHHHHhCC-------hHHHHHHHHHCCCHHHHHHHHHH
Confidence 88888888888888865 13345566777888877665443
No 209
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.17 E-value=0.36 Score=49.23 Aligned_cols=335 Identities=12% Similarity=0.090 Sum_probs=194.0
Q ss_pred hCCCCCChhhHHH-----HHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCC---hHHHHHHHhhcCC-
Q 007400 178 RFSISCNEFSFAG-----ILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGE---LSDARRLFDETDA- 248 (605)
Q Consensus 178 ~~~~~p~~~~~~~-----ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~- 248 (605)
.-|++.+..-|.. +|.-+...+.+..|.++-..+...-.. ...+|.....-+.+..+ .+.+..+-+++..
T Consensus 425 ~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~-~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~ 503 (829)
T KOG2280|consen 425 RIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQ-GDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAK 503 (829)
T ss_pred ccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCcccc-ccHHHHHHHHHHHhccCccchHHHHHHHHHhccc
Confidence 4567666665544 455566677778888776665321111 14566666666666532 2334444455555
Q ss_pred -CCcchHHHHHHHHHhcCChHHHHHHHhhCCCC--------ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChHH
Q 007400 249 -RDVLTWTTMVSGYAKLGDMESASKLFNEMPEK--------NPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHT 319 (605)
Q Consensus 249 -~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~ 319 (605)
....+|..+..-....|+.+.|..+++.-... +..-+...+.-+...|+.+-...++-.+... .+...
T Consensus 504 ~~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~---~~~s~ 580 (829)
T KOG2280|consen 504 LTPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNK---LNRSS 580 (829)
T ss_pred CCCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHH---HHHHH
Confidence 35677888888888889999998888765432 2333555566677777777777777666542 12222
Q ss_pred HHHHHHHHhcccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcC------CCCCcchHHHHHHH
Q 007400 320 FSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTD------NKENSMLWNTMISA 393 (605)
Q Consensus 320 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~------~~~~~~~~~~l~~~ 393 (605)
|...+ .+...|..+|.+..+..-.. .+-+.|- .++...+...|..-. ..+-..........
T Consensus 581 l~~~l------~~~p~a~~lY~~~~r~~~~~------~l~d~y~-q~dn~~~~a~~~~q~~~~~~~~~~r~~~lk~~a~~ 647 (829)
T KOG2280|consen 581 LFMTL------RNQPLALSLYRQFMRHQDRA------TLYDFYN-QDDNHQALASFHLQASYAAETIEGRIPALKTAANA 647 (829)
T ss_pred HHHHH------HhchhhhHHHHHHHHhhchh------hhhhhhh-cccchhhhhhhhhhhhhhhhhhcccchhHHHHHHH
Confidence 22211 23344555555544321111 1111222 222222222221000 00111122223333
Q ss_pred HHHcCCH---HHH-------HHHHHHHH-HCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHchHhhCCCCCHHHHHHHH
Q 007400 394 LTQHGYD---EQA-------IRLFHDMV-RSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLI 462 (605)
Q Consensus 394 ~~~~g~~---~~a-------~~~~~~m~-~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~ 462 (605)
+.+.... ++| +.+.+.+. +.|......+.+--+.-+...|+..+|.++-.+.+ .||...|-.-+
T Consensus 648 ~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk-----ipdKr~~wLk~ 722 (829)
T KOG2280|consen 648 FAKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK-----IPDKRLWWLKL 722 (829)
T ss_pred HhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC-----CcchhhHHHHH
Confidence 4433321 111 12222222 12222333455666666777899999999888776 68888888888
Q ss_pred HHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHH
Q 007400 463 ELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEK 542 (605)
Q Consensus 463 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 542 (605)
.+++..+++++-+++-++.. .+.-|.-...+|.++|+.++|.+++-+.-.+ .....+|.+.|++.+|.+
T Consensus 723 ~aLa~~~kweeLekfAkskk---sPIGy~PFVe~c~~~~n~~EA~KYiprv~~l--------~ekv~ay~~~~~~~eAad 791 (829)
T KOG2280|consen 723 TALADIKKWEELEKFAKSKK---SPIGYLPFVEACLKQGNKDEAKKYIPRVGGL--------QEKVKAYLRVGDVKEAAD 791 (829)
T ss_pred HHHHhhhhHHHHHHHHhccC---CCCCchhHHHHHHhcccHHHHhhhhhccCCh--------HHHHHHHHHhccHHHHHH
Confidence 99999999999999888776 2566777888999999999999887765322 168889999999999877
Q ss_pred HHH
Q 007400 543 VRQ 545 (605)
Q Consensus 543 ~~~ 545 (605)
.--
T Consensus 792 ~A~ 794 (829)
T KOG2280|consen 792 LAA 794 (829)
T ss_pred HHH
Confidence 643
No 210
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.16 E-value=0.0034 Score=58.66 Aligned_cols=124 Identities=11% Similarity=0.035 Sum_probs=67.2
Q ss_pred HHHHHHhccCcHHHHHHHHHHchHhhC----CCC---------CHHHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHH
Q 007400 424 VILNACTHSGLVQEGLTYFESMTHDLG----IIP---------NQEHHACLIELLAQAGCSDQLMNQLEKMP--YEHDSY 488 (605)
Q Consensus 424 ~l~~~~~~~g~~~~a~~~~~~~~~~~~----~~p---------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~ 488 (605)
.-...+.+.|++..|..-|+++..-.. ..+ -..++..|..++.+.+++.+|+...++.. .++|+.
T Consensus 213 e~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~K 292 (397)
T KOG0543|consen 213 ERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVK 292 (397)
T ss_pred HhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchh
Confidence 345667788888888888877653211 111 12334455555555555555555555431 234555
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHH-HHHHHHH
Q 007400 489 LWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLV-EKVRQLI 547 (605)
Q Consensus 489 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a-~~~~~~~ 547 (605)
.+..-+.+|...|+++.|+..|+++++++|+|..+-..|..+-.+...+.+. .++|..|
T Consensus 293 ALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~m 352 (397)
T KOG0543|consen 293 ALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYANM 352 (397)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555556666666666666666665555555555555444443332 4444444
No 211
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.16 E-value=0.02 Score=50.43 Aligned_cols=50 Identities=14% Similarity=0.221 Sum_probs=39.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCC---chHHHHHHHHHhcCCchHHHH
Q 007400 493 LHGVCRIHGNIDMGRKVVDQLIDQNPQSS---ATHGLLSSIYSALGKGRLVEK 542 (605)
Q Consensus 493 l~~~~~~~g~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~a~~ 542 (605)
++..|.+.|.+..|...++.+++..|++. .+...++.+|.+.|..+.+..
T Consensus 147 ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~~ 199 (203)
T PF13525_consen 147 IARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAADT 199 (203)
T ss_dssp HHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHHH
Confidence 56778899999999999999999999765 355678899999999885543
No 212
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.16 E-value=0.017 Score=52.15 Aligned_cols=104 Identities=14% Similarity=0.091 Sum_probs=80.2
Q ss_pred CC-CHHHHHHHHHHHhccCcHHHHHHHHHHchHhhCCCCC-HHHHHHHHHHHHhcC---ChHHHHHHHHhCC--CCCCHH
Q 007400 416 KP-DKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPN-QEHHACLIELLAQAG---CSDQLMNQLEKMP--YEHDSY 488 (605)
Q Consensus 416 ~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g---~~~~A~~~~~~~~--~~~~~~ 488 (605)
.| |...|..|..+|...|+.+.|...|.+.. .+.|+ +..+..+..++..+. ...++.++++++. .+.|+.
T Consensus 152 nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~---rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~ir 228 (287)
T COG4235 152 NPGDAEGWDLLGRAYMALGRASDALLAYRNAL---RLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIR 228 (287)
T ss_pred CCCCchhHHHHHHHHHHhcchhHHHHHHHHHH---HhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHH
Confidence 44 66789999999999999999999999887 34444 666666776654433 4567888888862 345677
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc
Q 007400 489 LWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSA 522 (605)
Q Consensus 489 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 522 (605)
+...|+..+...|++.+|...++.+++..|.+..
T Consensus 229 al~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~ 262 (287)
T COG4235 229 ALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDP 262 (287)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCc
Confidence 8888888999999999999999999999774443
No 213
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.14 E-value=0.23 Score=46.49 Aligned_cols=78 Identities=22% Similarity=0.218 Sum_probs=40.8
Q ss_pred cCChHHHHHHHhhcCCCC---cchHHHHHHHHHhcCChHHHHHHHhhCCCC---ChhhHHHHHHHHHhCCChHHHHHHHH
Q 007400 233 CGELSDARRLFDETDARD---VLTWTTMVSGYAKLGDMESASKLFNEMPEK---NPVSWTTLIAGYTRNGLGQKALELFT 306 (605)
Q Consensus 233 ~g~~~~a~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~ 306 (605)
.|+++.|.+-|+.|...- ..-...|.-..-+.|..+.|..+-++.-.. -...+.+.+...+..|+|+.|+++++
T Consensus 133 eG~~~~Ar~kfeAMl~dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd 212 (531)
T COG3898 133 EGDYEDARKKFEAMLDDPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVD 212 (531)
T ss_pred cCchHHHHHHHHHHhcChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHH
Confidence 455555555555554321 011222222233455555555555554332 23356667777777777777777777
Q ss_pred HHHH
Q 007400 307 RMMI 310 (605)
Q Consensus 307 ~m~~ 310 (605)
.-..
T Consensus 213 ~~~~ 216 (531)
T COG3898 213 AQRA 216 (531)
T ss_pred HHHH
Confidence 6554
No 214
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.12 E-value=0.0067 Score=51.84 Aligned_cols=96 Identities=7% Similarity=0.131 Sum_probs=77.1
Q ss_pred HHHhhC--CCCChhhHHHHHHHHHhC-----CChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhcc--------------
Q 007400 272 KLFNEM--PEKNPVSWTTLIAGYTRN-----GLGQKALELFTRMMILRIRPNQHTFSSCLCACASI-------------- 330 (605)
Q Consensus 272 ~~~~~~--~~~~~~~~~~l~~~~~~~-----g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~-------------- 330 (605)
..|+.. ..++-.+|..++..|.+. |+.+-....++.|.+-|+.-|..+|+.|+..+-+.
T Consensus 35 ~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~h 114 (228)
T PF06239_consen 35 ELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMH 114 (228)
T ss_pred HHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhcc
Confidence 555555 456777788888777654 78888888999999999999999999999987652
Q ss_pred --cchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCC
Q 007400 331 --VSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGC 367 (605)
Q Consensus 331 --~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 367 (605)
.+-+-|.+++++|...|+-||..++..|++.+++.+.
T Consensus 115 yp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 115 YPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred CcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 2346788999999999999999999999998877654
No 215
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.09 E-value=0.0065 Score=56.88 Aligned_cols=126 Identities=12% Similarity=0.025 Sum_probs=89.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHC-----CCCCC---------HHHHHHHHHHHhccCcHHHHHHHHHHchHhhCCCCC-
Q 007400 390 MISALTQHGYDEQAIRLFHDMVRS-----SVKPD---------KITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPN- 454 (605)
Q Consensus 390 l~~~~~~~g~~~~a~~~~~~m~~~-----~~~p~---------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~- 454 (605)
-...|.+.|++..|...|++.+.. +..+. ..++..+..++.+.+++..|+..-.+.. ...|+
T Consensus 214 ~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvL---e~~~~N 290 (397)
T KOG0543|consen 214 RGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVL---ELDPNN 290 (397)
T ss_pred hhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHH---hcCCCc
Confidence 355788999999999999987652 11111 1356777788889999999999999888 44544
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHH-HHHHHHHHHhcC-CHHHHHHHHHHHHhcCC
Q 007400 455 QEHHACLIELLAQAGCSDQLMNQLEKM-PYEHDSYL-WNALHGVCRIHG-NIDMGRKVVDQLIDQNP 518 (605)
Q Consensus 455 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~-~~~l~~~~~~~g-~~~~A~~~~~~~~~~~p 518 (605)
......-..++...|+++.|+..|+++ ...|+... -..++..-.+.. ..+...++|.+|+...+
T Consensus 291 ~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k~~ 357 (397)
T KOG0543|consen 291 VKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYANMFAKLA 357 (397)
T ss_pred hhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 667777788999999999999999987 34555444 444444433333 34455778888887644
No 216
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.04 E-value=0.44 Score=48.11 Aligned_cols=213 Identities=8% Similarity=0.019 Sum_probs=95.5
Q ss_pred hHHHHHHHhhcCCCCceeHHHHHHHHHhcCChHHHHHHHHHHHh-CCCCC--------ChhhHHHHHHHHhccCChHHHH
Q 007400 135 MKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRR-FSISC--------NEFSFAGILTICVKLEELKLTR 205 (605)
Q Consensus 135 ~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-~~~~p--------~~~~~~~ll~~~~~~~~~~~a~ 205 (605)
+++|.+..+.- |.+..|..+.......-.++.|...|-+... .|++. +...-.+=+. +--|.+++|+
T Consensus 679 ledA~qfiEdn--PHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~--~~~g~feeae 754 (1189)
T KOG2041|consen 679 LEDAIQFIEDN--PHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEIS--AFYGEFEEAE 754 (1189)
T ss_pred hHHHHHHHhcC--CchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHh--hhhcchhHhh
Confidence 45555554443 4445666666655555555555555544432 12210 0000001111 1235566666
Q ss_pred HHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhcCCCC-----cchHHHHHHHHHhcCChHHHHHHHhhCCCC
Q 007400 206 QVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARD-----VLTWTTMVSGYAKLGDMESASKLFNEMPEK 280 (605)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-----~~~~~~li~~~~~~~~~~~A~~~~~~~~~~ 280 (605)
++|-++-+.+ ..+..+.+.|++-.+.++++.-...+ ...|+.+...+.....|++|.+.+..-...
T Consensus 755 k~yld~drrD---------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~ 825 (1189)
T KOG2041|consen 755 KLYLDADRRD---------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT 825 (1189)
T ss_pred hhhhccchhh---------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch
Confidence 6655443332 13455555666666665555433321 134555555555555555555555443211
Q ss_pred ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhcccchHHHHHHHHHHHHcCCCCChhHHHHHHH
Q 007400 281 NPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLID 360 (605)
Q Consensus 281 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 360 (605)
...+.++.+..++++-..+... ++-+....-.+...+.+.|.-++|.+.+-+. + .| ...+.
T Consensus 826 -----e~~~ecly~le~f~~LE~la~~-----Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~---s-~p-----kaAv~ 886 (1189)
T KOG2041|consen 826 -----ENQIECLYRLELFGELEVLART-----LPEDSELLPVMADMFTSVGMCDQAVEAYLRR---S-LP-----KAAVH 886 (1189)
T ss_pred -----HhHHHHHHHHHhhhhHHHHHHh-----cCcccchHHHHHHHHHhhchHHHHHHHHHhc---c-Cc-----HHHHH
Confidence 1123333333333333222222 2333344444555556666655555444322 1 11 12344
Q ss_pred HHHhcCChHHHHHHHHhcC
Q 007400 361 MYSKCGCLNDGRQVFDLTD 379 (605)
Q Consensus 361 ~~~~~g~~~~A~~~~~~~~ 379 (605)
.+...+++.+|.++-+...
T Consensus 887 tCv~LnQW~~avelaq~~~ 905 (1189)
T KOG2041|consen 887 TCVELNQWGEAVELAQRFQ 905 (1189)
T ss_pred HHHHHHHHHHHHHHHHhcc
Confidence 5555566666666655443
No 217
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.03 E-value=0.045 Score=48.02 Aligned_cols=138 Identities=9% Similarity=0.012 Sum_probs=97.6
Q ss_pred hhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhcccchHHHHHHHHHHHHcCCCCChhHHH-----H
Q 007400 283 VSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMS-----S 357 (605)
Q Consensus 283 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-----~ 357 (605)
...+.++..+.-.|.+.-....+++..+...+-+......+.+.-.+.|+.+.|...++...+..-..+...++ .
T Consensus 178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n 257 (366)
T KOG2796|consen 178 RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMN 257 (366)
T ss_pred HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhh
Confidence 34566677777788888888888888886656677777788888888899999988888776543333333333 3
Q ss_pred HHHHHHhcCChHHHHHHHHhcCCC--CCcchHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 007400 358 LIDMYSKCGCLNDGRQVFDLTDNK--ENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITL 422 (605)
Q Consensus 358 l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~ 422 (605)
....|.-.+++..|...|+++... .|+..-|.-.-+..-.|+...|++.++.|+.. .|...+-
T Consensus 258 ~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~--~P~~~l~ 322 (366)
T KOG2796|consen 258 SAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ--DPRHYLH 322 (366)
T ss_pred hhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc--CCccchh
Confidence 344566778888888888877643 25555565555566678889999999998884 5554433
No 218
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.00 E-value=0.032 Score=49.18 Aligned_cols=83 Identities=12% Similarity=0.059 Sum_probs=57.6
Q ss_pred ChHHHHHHHHHHHhcCChhHHHHHHHHHHHcCC--CCChhhHHHHHHHhhhcCChhHHHHHHHHHHHhCCCCCchhhHHH
Q 007400 16 PNNCLIQSFLSLISKGQLSEAISSLDLLAQRGI--RLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNH 93 (605)
Q Consensus 16 ~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~g~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 93 (605)
+...++.........|++.+|...|+.+..... +........++.++...|+++.|...++..++..|..+.. .+..
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~-~~A~ 82 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKA-DYAL 82 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTH-HHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcch-hhHH
Confidence 445566666778899999999999999987531 1223566667788889999999999999999998877765 4544
Q ss_pred HHHHHH
Q 007400 94 LISMYF 99 (605)
Q Consensus 94 l~~~~~ 99 (605)
.+.+.+
T Consensus 83 Y~~g~~ 88 (203)
T PF13525_consen 83 YMLGLS 88 (203)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444443
No 219
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.89 E-value=0.053 Score=47.60 Aligned_cols=59 Identities=12% Similarity=0.190 Sum_probs=31.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHch
Q 007400 388 NTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMT 446 (605)
Q Consensus 388 ~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 446 (605)
+.++..+.-.|.+.-.+.++++.++...+-++.....|.+.-.+.||.+.|...|++..
T Consensus 181 y~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~ve 239 (366)
T KOG2796|consen 181 YSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVE 239 (366)
T ss_pred HHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 33444444455555555555555554333344555555555556666666666665554
No 220
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.85 E-value=0.0016 Score=47.12 Aligned_cols=61 Identities=16% Similarity=0.155 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHhCC-----CC---CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 007400 456 EHHACLIELLAQAGCSDQLMNQLEKMP-----YE---HD-SYLWNALHGVCRIHGNIDMGRKVVDQLIDQ 516 (605)
Q Consensus 456 ~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~---~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 516 (605)
.+++.+...|...|++++|++.+++.. .. |+ ..++..++.++...|++++|++.+++++++
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 345556666666666666665555431 11 22 446677888888888888888888888764
No 221
>PRK11906 transcriptional regulator; Provisional
Probab=96.83 E-value=0.023 Score=54.84 Aligned_cols=142 Identities=13% Similarity=0.064 Sum_probs=83.0
Q ss_pred CHHHHHHHHHHHHH-CCCCCCH-HHHHHHHHHHhc---------cCcHHHHHHHHHHchHhhCCCCC-HHHHHHHHHHHH
Q 007400 399 YDEQAIRLFHDMVR-SSVKPDK-ITLAVILNACTH---------SGLVQEGLTYFESMTHDLGIIPN-QEHHACLIELLA 466 (605)
Q Consensus 399 ~~~~a~~~~~~m~~-~~~~p~~-~~~~~l~~~~~~---------~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~ 466 (605)
..+.|+.+|.+.+. ..+.|+. ..|..+..++.. ..+..+|.+.-++.. .+.|+ +.....+..++.
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv---eld~~Da~a~~~~g~~~~ 349 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS---DITTVDGKILAIMGLITG 349 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH---hcCCCCHHHHHHHHHHHH
Confidence 34567778888871 1256654 466666655432 122344555555554 44443 555666666667
Q ss_pred hcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHH--HHHHHHHhcCCchHHHH
Q 007400 467 QAGCSDQLMNQLEKMP-YEH-DSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHG--LLSSIYSALGKGRLVEK 542 (605)
Q Consensus 467 ~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~--~l~~~~~~~g~~~~a~~ 542 (605)
-.|+++.|..+|++.. ..| ...+|...+..+.-.|+.++|.+.++++++++|....+-. ...++|+..+ .++|+.
T Consensus 350 ~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~~-~~~~~~ 428 (458)
T PRK11906 350 LSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPNP-LKNNIK 428 (458)
T ss_pred hhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCCc-hhhhHH
Confidence 7777777777777752 333 3556666666667778888888888888888775443333 3333455444 344444
Q ss_pred HH
Q 007400 543 VR 544 (605)
Q Consensus 543 ~~ 544 (605)
++
T Consensus 429 ~~ 430 (458)
T PRK11906 429 LY 430 (458)
T ss_pred HH
Confidence 43
No 222
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=96.82 E-value=0.32 Score=43.13 Aligned_cols=189 Identities=14% Similarity=0.103 Sum_probs=112.4
Q ss_pred CCCChHHHHHHHHHHHhcCChhHHHHHHHHHHHcC--CCCChhhHHHHHHHhhhcCChhHHHHHHHHHHHhCCCCCchhh
Q 007400 13 KNLPNNCLIQSFLSLISKGQLSEAISSLDLLAQRG--IRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFL 90 (605)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~g--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 90 (605)
...|-+.+.+..+..+..|++.+|.+.|+.+.... -+....+...++.+..+.++++.|....+..+...|..++. .
T Consensus 30 ~~~p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~-d 108 (254)
T COG4105 30 YNLPASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNA-D 108 (254)
T ss_pred cCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCh-h
Confidence 34577788888888889999999999999997653 12244566667777889999999999999999999988888 7
Q ss_pred HHHHHHHHHhc-------CChhHHHHHhccCCCCCchHHHHHHHHHHccCChHHHHHHHhhcCCCCceeH--HHHHHHHH
Q 007400 91 SNHLISMYFKC-------GSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSW--NTMIIGYA 161 (605)
Q Consensus 91 ~~~l~~~~~~~-------g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~li~~~~ 161 (605)
|-..|.+++.. +|...+...+..+ ..++.-|=...=...|..-...+. |.... -.+.+.|.
T Consensus 109 Y~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f--------~~~i~ryPnS~Ya~dA~~~i~~~~--d~LA~~Em~IaryY~ 178 (254)
T COG4105 109 YAYYLKGLSYFFQIDDVTRDQSAARAAFAAF--------KELVQRYPNSRYAPDAKARIVKLN--DALAGHEMAIARYYL 178 (254)
T ss_pred HHHHHHHHHHhccCCccccCHHHHHHHHHHH--------HHHHHHCCCCcchhhHHHHHHHHH--HHHHHHHHHHHHHHH
Confidence 88788877732 1111111111111 111111111111111111111000 11111 12346678
Q ss_pred hcCChHHHHHHHHHHHhCCCCCChh---hHHHHHHHHhccCChHHHHHHHHHHHH
Q 007400 162 KSGAVEEGLKFYKVLRRFSISCNEF---SFAGILTICVKLEELKLTRQVHGQVLV 213 (605)
Q Consensus 162 ~~~~~~~a~~~~~~m~~~~~~p~~~---~~~~ll~~~~~~~~~~~a~~~~~~~~~ 213 (605)
+.|.+..|..-++.|.+. .+-+.. .+-.+..+|...|-.++|.+.-+-+..
T Consensus 179 kr~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~ 232 (254)
T COG4105 179 KRGAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGA 232 (254)
T ss_pred HhcChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 888888888888888774 222222 344455566666766666666554433
No 223
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=96.82 E-value=0.16 Score=39.58 Aligned_cols=141 Identities=13% Similarity=0.124 Sum_probs=88.5
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHchHhhCCCCCHHHHHHHHHHHHhcCChHH
Q 007400 394 LTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQ 473 (605)
Q Consensus 394 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 473 (605)
..-.|..++..++..+.... .+..-++.++--....-+-+-..+.++.+-+- .| ...+|++.+
T Consensus 12 ~ildG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGki----FD----------is~C~NlKr 74 (161)
T PF09205_consen 12 RILDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKI----FD----------ISKCGNLKR 74 (161)
T ss_dssp HHHTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGG----S-----------GGG-S-THH
T ss_pred HHHhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhh----cC----------chhhcchHH
Confidence 44578888888988888763 24455666555444444445555555555422 12 123455555
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCCCc
Q 007400 474 LMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFK 553 (605)
Q Consensus 474 A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 553 (605)
...-+-.+. .+.......+.....+|+-++-.+++..+.+....++.....++.+|.+.|+..++.+++.++-++|++
T Consensus 75 Vi~C~~~~n--~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 75 VIECYAKRN--KLSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp HHHHHHHTT-----HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHHHHhc--chHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 555555554 455566667788899999999999999988664448899999999999999999999999999998874
No 224
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.82 E-value=0.73 Score=47.15 Aligned_cols=349 Identities=14% Similarity=0.117 Sum_probs=188.6
Q ss_pred HHHhcCChhHHHHHHHHH--------HHcCCCCChhhHHH-----HHHHhhhcCChhHHHHHHHHHHHhCCCCCchhhHH
Q 007400 26 SLISKGQLSEAISSLDLL--------AQRGIRLPAETLAF-----ILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSN 92 (605)
Q Consensus 26 ~~~~~g~~~~a~~~~~~~--------~~~g~~~~~~~~~~-----ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 92 (605)
++.+..++++-..+-..+ .+-|++.+...|.. ++..+...+.+..|.++-..+....... .. +|.
T Consensus 398 ~~l~~~~~d~~~~v~~~lrVln~~r~~~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~-Vl~ 475 (829)
T KOG2280|consen 398 ASLRTPNPDEYMRVCRELRVLNALRDVRIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQG-DR-VLL 475 (829)
T ss_pred cccccCChHHHHHHHHHHHHHhhhcccccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccc-cH-HHH
Confidence 333445555544444333 35677777666654 5666677788888888876654222222 23 677
Q ss_pred HHHHHHHhcC---ChhHHHHHhccCCC--CCchHHHHHHHHHHccCChHHHHHHHhhcCCC--------CceeHHHHHHH
Q 007400 93 HLISMYFKCG---SDVDARKVFDKIPV--KNLFSYNNMLSGYANLGMMKHARNLFDNMAER--------DVVSWNTMIIG 159 (605)
Q Consensus 93 ~l~~~~~~~g---~~~~a~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~li~~ 159 (605)
.....+.+.. +-+.+..+-+++.. ....+|..+.+.....|+.+-|..+++.=+.. +..-+...+.-
T Consensus 476 ~Wa~~kI~~~d~~d~~vld~I~~kls~~~~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~k 555 (829)
T KOG2280|consen 476 EWARRKIKQSDKMDEEVLDKIDEKLSAKLTPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKK 555 (829)
T ss_pred HHHHHHHhccCccchHHHHHHHHHhcccCCCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHH
Confidence 7777666653 23334444444444 34567888888888999999999998865431 34456666777
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHH
Q 007400 160 YAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDA 239 (605)
Q Consensus 160 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 239 (605)
+.+.|+.+-...++-.+... .+...|...+ .+...|..+|.+..+..-. . .|-+.|-...+...+
T Consensus 556 aies~d~~Li~~Vllhlk~~---~~~s~l~~~l------~~~p~a~~lY~~~~r~~~~---~---~l~d~y~q~dn~~~~ 620 (829)
T KOG2280|consen 556 AIESGDTDLIIQVLLHLKNK---LNRSSLFMTL------RNQPLALSLYRQFMRHQDR---A---TLYDFYNQDDNHQAL 620 (829)
T ss_pred HHhcCCchhHHHHHHHHHHH---HHHHHHHHHH------HhchhhhHHHHHHHHhhch---h---hhhhhhhcccchhhh
Confidence 78888888888887776542 1222222222 2334455555554442111 0 011112111111111
Q ss_pred HHHH-hhcC-----CCCcchHHHHHHHHHhcCChHHH----------HHHHhhCCCC-----ChhhHHHHHHHHHhCCCh
Q 007400 240 RRLF-DETD-----ARDVLTWTTMVSGYAKLGDMESA----------SKLFNEMPEK-----NPVSWTTLIAGYTRNGLG 298 (605)
Q Consensus 240 ~~~~-~~~~-----~~~~~~~~~li~~~~~~~~~~~A----------~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~ 298 (605)
-.+. +... ..-........+.+.+.....-. +.+.+.+... .--+.+--+..+..-|+.
T Consensus 621 a~~~~q~~~~~~~~~~r~~~lk~~a~~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~ 700 (829)
T KOG2280|consen 621 ASFHLQASYAAETIEGRIPALKTAANAFAKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQN 700 (829)
T ss_pred hhhhhhhhhhhhhhcccchhHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccch
Confidence 1110 0000 00011112222222222221111 1111111111 112344455666777888
Q ss_pred HHHHHHHHHHHHCCCCCChHHHHHHHHHHhcccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhc
Q 007400 299 QKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLT 378 (605)
Q Consensus 299 ~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 378 (605)
.+|.++-.+.+ -||-..|-.-+.+++..+++++-+++-+.. -++.-|...+..+.+.|+.++|.+.+..+
T Consensus 701 k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAksk------ksPIGy~PFVe~c~~~~n~~EA~KYiprv 770 (829)
T KOG2280|consen 701 KRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSK------KSPIGYLPFVEACLKQGNKDEAKKYIPRV 770 (829)
T ss_pred HHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhcc------CCCCCchhHHHHHHhcccHHHHhhhhhcc
Confidence 88877776655 577777777777888777777655443322 12455666777888888888888888766
Q ss_pred CCCCCcchHHHHHHHHHHcCCHHHHHHHH
Q 007400 379 DNKENSMLWNTMISALTQHGYDEQAIRLF 407 (605)
Q Consensus 379 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 407 (605)
..-+ -...+|.+.|++.+|.++-
T Consensus 771 ~~l~------ekv~ay~~~~~~~eAad~A 793 (829)
T KOG2280|consen 771 GGLQ------EKVKAYLRVGDVKEAADLA 793 (829)
T ss_pred CChH------HHHHHHHHhccHHHHHHHH
Confidence 6542 4556677777777776654
No 225
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=96.82 E-value=0.63 Score=46.42 Aligned_cols=183 Identities=11% Similarity=0.048 Sum_probs=125.4
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhcCCC--CCcchHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 007400 351 NTIVMSSLIDMYSKCGCLNDGRQVFDLTDNK--ENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNA 428 (605)
Q Consensus 351 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~ 428 (605)
+...|...+..-.+.|+.+.+.-+|+....+ --...|-..+.-....|+.+-|..++.+..+-.++-.+.+-..-..-
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f 375 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARF 375 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHH
Confidence 4556777788888999999999999887654 12334555566666669999988888777765333333333333333
Q ss_pred HhccCcHHHHHHHHHHchHhhCCCCC-HHHHHHHHHHHHhcCChHHHH---HHHHhCC-CCCCHHHHHHHH----H-HHH
Q 007400 429 CTHSGLVQEGLTYFESMTHDLGIIPN-QEHHACLIELLAQAGCSDQLM---NQLEKMP-YEHDSYLWNALH----G-VCR 498 (605)
Q Consensus 429 ~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~---~~~~~~~-~~~~~~~~~~l~----~-~~~ 498 (605)
+...|++..|..+++.+..+ . |+ ...-..-+....+.|..+.+. +++.... ...+......+. . .+.
T Consensus 376 ~e~~~n~~~A~~~lq~i~~e--~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~ 452 (577)
T KOG1258|consen 376 EESNGNFDDAKVILQRIESE--Y-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYK 452 (577)
T ss_pred HHhhccHHHHHHHHHHHHhh--C-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHH
Confidence 55678999999999999844 3 66 334444455677888888888 5554432 222322222222 1 345
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCC
Q 007400 499 IHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGK 536 (605)
Q Consensus 499 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 536 (605)
..++.+.|..++.++.+..|++...|..+.+.....+.
T Consensus 453 i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~ 490 (577)
T KOG1258|consen 453 IREDADLARIILLEANDILPDCKVLYLELIRFELIQPS 490 (577)
T ss_pred HhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCCc
Confidence 57899999999999999999999999999988887763
No 226
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=96.82 E-value=0.5 Score=45.20 Aligned_cols=87 Identities=10% Similarity=-0.044 Sum_probs=53.1
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHHhhhcCChhHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCChhHHHHHhccCCCC
Q 007400 38 SSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVK 117 (605)
Q Consensus 38 ~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 117 (605)
++=++..+ .+.|+.+|-.++..+...+..++.+++++++..-.+-.+. ++...+++=....++..++.+|.+....
T Consensus 30 rLRerIkd--NPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~--aw~ly~s~ELA~~df~svE~lf~rCL~k 105 (660)
T COG5107 30 RLRERIKD--NPTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEH--AWRLYMSGELARKDFRSVESLFGRCLKK 105 (660)
T ss_pred HHHHHhhc--CchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccH--HHHHHhcchhhhhhHHHHHHHHHHHHhh
Confidence 33344443 3566777778888887777788888887777644333222 5666666666667777777777666532
Q ss_pred --CchHHHHHHHH
Q 007400 118 --NLFSYNNMLSG 128 (605)
Q Consensus 118 --~~~~~~~li~~ 128 (605)
+...|...++.
T Consensus 106 ~l~ldLW~lYl~Y 118 (660)
T COG5107 106 SLNLDLWMLYLEY 118 (660)
T ss_pred hccHhHHHHHHHH
Confidence 34445554443
No 227
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=96.81 E-value=0.2 Score=47.10 Aligned_cols=126 Identities=15% Similarity=0.075 Sum_probs=60.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHh-------cCCC-CCcchHHHHHHHHHHcCCHHHHHHHHHHHHH----CCC-CCCHH
Q 007400 354 VMSSLIDMYSKCGCLNDGRQVFDL-------TDNK-ENSMLWNTMISALTQHGYDEQAIRLFHDMVR----SSV-KPDKI 420 (605)
Q Consensus 354 ~~~~l~~~~~~~g~~~~A~~~~~~-------~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~----~~~-~p~~~ 420 (605)
.|..|...|.-.|+++.|+..-+. ...+ .....+..+..++.-.|+++.|.+.|+.... .|- .....
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 344444555555666666544331 1111 1223455566666667777777776665432 111 11223
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHchHh---h-CCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 007400 421 TLAVILNACTHSGLVQEGLTYFESMTHD---L-GIIPNQEHHACLIELLAQAGCSDQLMNQLE 479 (605)
Q Consensus 421 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 479 (605)
+...|..+|.-..+++.|+.++.+-..- . ...-....+..|..+|...|..++|+.+.+
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae 339 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAE 339 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 4455555665556666666666543310 0 111123344455555555555555555443
No 228
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=96.75 E-value=0.56 Score=44.89 Aligned_cols=133 Identities=11% Similarity=0.145 Sum_probs=92.1
Q ss_pred CcchHHHHHHHHHHcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHhccCcHHHHHHHHHHchHhhCCCCCHH-HHHH
Q 007400 383 NSMLWNTMISALTQHGYDEQAIRLFHDMVRSS-VKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQE-HHAC 460 (605)
Q Consensus 383 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~-~~~~ 460 (605)
-...|...+..-.+..-.+.|..+|-++.+.| +.++...+++++.-++ .|+..-|..+|+.-.. .-||.. .-..
T Consensus 396 ~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~---~f~d~~~y~~k 471 (660)
T COG5107 396 LTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLL---KFPDSTLYKEK 471 (660)
T ss_pred hhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHH---hCCCchHHHHH
Confidence 44567777777777777788888888888877 5566677777777554 4677788888876552 234433 3355
Q ss_pred HHHHHHhcCChHHHHHHHHhCC--CCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 007400 461 LIELLAQAGCSDQLMNQLEKMP--YEHD--SYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQ 519 (605)
Q Consensus 461 l~~~~~~~g~~~~A~~~~~~~~--~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 519 (605)
.+..+.+.++-+.|..+|+... +..+ ..+|..++.--..-|+...+..+-+++.+..|.
T Consensus 472 yl~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQ 534 (660)
T COG5107 472 YLLFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQ 534 (660)
T ss_pred HHHHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCc
Confidence 6667778888888888887542 1122 456777777777778888888888888887774
No 229
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.71 E-value=0.14 Score=50.98 Aligned_cols=67 Identities=13% Similarity=0.179 Sum_probs=34.0
Q ss_pred HHHHHHhcCChHHHHHHHhhcCCCCcchHHHHHHHHHhcCChHHHHHHHhhCCCCChhhHHHHHHHHHhCCChHHHHHHH
Q 007400 226 IVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELF 305 (605)
Q Consensus 226 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 305 (605)
++......+++++|..+-++..+--+.+|-...+-++...++++|.+ +|.+.|+..+|..++
T Consensus 779 iVqlHve~~~W~eAFalAe~hPe~~~dVy~pyaqwLAE~DrFeEAqk------------------AfhkAGr~~EA~~vL 840 (1081)
T KOG1538|consen 779 LVQLHVETQRWDEAFALAEKHPEFKDDVYMPYAQWLAENDRFEEAQK------------------AFHKAGRQREAVQVL 840 (1081)
T ss_pred HhhheeecccchHhHhhhhhCccccccccchHHHHhhhhhhHHHHHH------------------HHHHhcchHHHHHHH
Confidence 44445555555555555555544333333333333444444444433 345566667777777
Q ss_pred HHHHH
Q 007400 306 TRMMI 310 (605)
Q Consensus 306 ~~m~~ 310 (605)
+++..
T Consensus 841 eQLtn 845 (1081)
T KOG1538|consen 841 EQLTN 845 (1081)
T ss_pred HHhhh
Confidence 66654
No 230
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.62 E-value=0.0095 Score=49.38 Aligned_cols=60 Identities=13% Similarity=0.160 Sum_probs=52.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHH
Q 007400 489 LWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLIN 548 (605)
Q Consensus 489 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 548 (605)
+...++..+...|++++|...+++++..+|.+...+..++.+|...|+..+|.++|+.+.
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~ 123 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYR 123 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 455567778899999999999999999999999999999999999999999999998884
No 231
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.58 E-value=0.017 Score=51.36 Aligned_cols=57 Identities=14% Similarity=0.131 Sum_probs=34.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCC---CchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 007400 493 LHGVCRIHGNIDMGRKVVDQLIDQNPQS---SATHGLLSSIYSALGKGRLVEKVRQLINE 549 (605)
Q Consensus 493 l~~~~~~~g~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 549 (605)
|+.++..+|++++|..+|..+.+..|++ +.++.-|+.+..+.|+.++|..+|+++.+
T Consensus 184 LGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k 243 (262)
T COG1729 184 LGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIK 243 (262)
T ss_pred HHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 5556666666666666666666654443 34455566666666666666666666544
No 232
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=96.55 E-value=0.52 Score=41.90 Aligned_cols=158 Identities=18% Similarity=0.222 Sum_probs=95.4
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCC-CC-CHHHHHHHHHHHhccCcHHHHHHHHHHchHhhCCCCCHHHHHHHHHHHHh-
Q 007400 391 ISALTQHGYDEQAIRLFHDMVRSSV-KP-DKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQ- 467 (605)
Q Consensus 391 ~~~~~~~g~~~~a~~~~~~m~~~~~-~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~- 467 (605)
+..-.+.|++++|...|+.+..... .| ...+...++.++.+.++++.|+...++..+.++-.|+.+ |...+.++..
T Consensus 41 g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~d-Y~~YlkgLs~~ 119 (254)
T COG4105 41 GLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNAD-YAYYLKGLSYF 119 (254)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChh-HHHHHHHHHHh
Confidence 3344566777777777777765421 11 234566666666777777777777777765555555543 2222222221
Q ss_pred ------cCChHHHHHH-------HHhCC---CCCCHHHH------------HHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 007400 468 ------AGCSDQLMNQ-------LEKMP---YEHDSYLW------------NALHGVCRIHGNIDMGRKVVDQLIDQNPQ 519 (605)
Q Consensus 468 ------~g~~~~A~~~-------~~~~~---~~~~~~~~------------~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 519 (605)
..+...+.+. +++.+ ..+|+..- ..++..|.+.|.+..|..-++.+++..|+
T Consensus 120 ~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~ 199 (254)
T COG4105 120 FQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEEVLENYPD 199 (254)
T ss_pred ccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhcccc
Confidence 1122222222 22222 11332211 13566788999999999999999999776
Q ss_pred CCc---hHHHHHHHHHhcCCchHHHHHHHHHHh
Q 007400 520 SSA---THGLLSSIYSALGKGRLVEKVRQLINE 549 (605)
Q Consensus 520 ~~~---~~~~l~~~~~~~g~~~~a~~~~~~~~~ 549 (605)
... .+..+..+|.+.|..++|...-+-+..
T Consensus 200 t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~ 232 (254)
T COG4105 200 TSAVREALARLEEAYYALGLTDEAKKTAKVLGA 232 (254)
T ss_pred ccchHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 554 555678889999999999998776654
No 233
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=96.55 E-value=0.03 Score=43.24 Aligned_cols=89 Identities=13% Similarity=0.129 Sum_probs=70.8
Q ss_pred HHHHhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-CCCC---chHHHHHHHHHhcCC
Q 007400 463 ELLAQAGCSDQLMNQLEKM--PYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQN-PQSS---ATHGLLSSIYSALGK 536 (605)
Q Consensus 463 ~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~---~~~~~l~~~~~~~g~ 536 (605)
-++...|+.+.|++.|.+. ..+.....|+.-+.++.-+|+.++|++-+++++++. |... ..|..-+.+|...|+
T Consensus 51 valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 3567788888888888775 234577889999999999999999999999999983 3322 356677888999999
Q ss_pred chHHHHHHHHHHhCC
Q 007400 537 GRLVEKVRQLINERQ 551 (605)
Q Consensus 537 ~~~a~~~~~~~~~~~ 551 (605)
-++|..-|+...+.|
T Consensus 131 dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 131 DDAARADFEAAAQLG 145 (175)
T ss_pred hHHHHHhHHHHHHhC
Confidence 999999998887766
No 234
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.51 E-value=0.36 Score=46.81 Aligned_cols=61 Identities=8% Similarity=-0.005 Sum_probs=34.9
Q ss_pred cchHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH----HHHHHHHHHhccCcHHHHHHHHHHch
Q 007400 384 SMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKI----TLAVILNACTHSGLVQEGLTYFESMT 446 (605)
Q Consensus 384 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~----~~~~l~~~~~~~g~~~~a~~~~~~~~ 446 (605)
...|+.+..+|...|++++|+..|++.++ +.|+.. +|..+..+|...|+.++|+..++++.
T Consensus 75 a~a~~NLG~AL~~lGryeEAIa~f~rALe--L~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrAL 139 (453)
T PLN03098 75 AEDAVNLGLSLFSKGRVKDALAQFETALE--LNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTAL 139 (453)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34555555566666666666666666555 345432 35555556666666666666666555
No 235
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=96.51 E-value=0.074 Score=42.60 Aligned_cols=90 Identities=14% Similarity=0.102 Sum_probs=61.8
Q ss_pred HHHHHHHhcCChHHHHHHHHhCC----C-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc---hHHHHHHHH
Q 007400 460 CLIELLAQAGCSDQLMNQLEKMP----Y-EHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSA---THGLLSSIY 531 (605)
Q Consensus 460 ~l~~~~~~~g~~~~A~~~~~~~~----~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~---~~~~l~~~~ 531 (605)
.-.....+.|++++|.+.|+.+. . +-...+...++.++.+.|+++.|...+++.+++.|.++. ++...|-++
T Consensus 15 ~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~ 94 (142)
T PF13512_consen 15 QEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSY 94 (142)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHH
Confidence 33445567788888888887762 1 223455667888999999999999999999999887764 444455555
Q ss_pred HhcCC---------------chHHHHHHHHHHh
Q 007400 532 SALGK---------------GRLVEKVRQLINE 549 (605)
Q Consensus 532 ~~~g~---------------~~~a~~~~~~~~~ 549 (605)
.++.. ..+|..-|+.+.+
T Consensus 95 ~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~ 127 (142)
T PF13512_consen 95 YEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVR 127 (142)
T ss_pred HHHhhhHHhhhcccccCcHHHHHHHHHHHHHHH
Confidence 55544 5566666666654
No 236
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.49 E-value=0.42 Score=45.63 Aligned_cols=72 Identities=15% Similarity=0.169 Sum_probs=42.9
Q ss_pred HHHHHHHhcCChHHHHHHHhhCCCC-------ChhhHHHHHHHHHh---CCChHHHHHHHHHHHHCCCCCChHHHHHHHH
Q 007400 256 TMVSGYAKLGDMESASKLFNEMPEK-------NPVSWTTLIAGYTR---NGLGQKALELFTRMMILRIRPNQHTFSSCLC 325 (605)
Q Consensus 256 ~li~~~~~~~~~~~A~~~~~~~~~~-------~~~~~~~l~~~~~~---~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 325 (605)
.++-+|....+++...++.+.+... ....-...+-++.+ .|+.++|++++..+......++..||..+.+
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 4444455556666666666666542 12222234445555 6788888888877665555677777776665
Q ss_pred HH
Q 007400 326 AC 327 (605)
Q Consensus 326 ~~ 327 (605)
.|
T Consensus 226 Iy 227 (374)
T PF13281_consen 226 IY 227 (374)
T ss_pred HH
Confidence 54
No 237
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=96.41 E-value=0.01 Score=34.44 Aligned_cols=33 Identities=15% Similarity=0.298 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 007400 488 YLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQS 520 (605)
Q Consensus 488 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 520 (605)
..|..++..+...|++++|++.|+++++++|+|
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 467778888899999999999999999998864
No 238
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.33 E-value=0.092 Score=46.91 Aligned_cols=94 Identities=18% Similarity=0.119 Sum_probs=55.9
Q ss_pred ccCcHHHHHHHHHHchHhhCCC-CCHHHHHHHHHHHHhcCChHHHHHHHHhC----CC-CCCHHHHHHHHHHHHhcCCHH
Q 007400 431 HSGLVQEGLTYFESMTHDLGII-PNQEHHACLIELLAQAGCSDQLMNQLEKM----PY-EHDSYLWNALHGVCRIHGNID 504 (605)
Q Consensus 431 ~~g~~~~a~~~~~~~~~~~~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~-~~~~~~~~~l~~~~~~~g~~~ 504 (605)
+.|++..|...|....+.+.-. -....+..|..++...|++++|...|..+ +. +.-+..+..|+.+....|+-+
T Consensus 153 ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d 232 (262)
T COG1729 153 KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTD 232 (262)
T ss_pred HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHH
Confidence 3455666666666555322111 11334445666666666666666665544 21 223466667777777888888
Q ss_pred HHHHHHHHHHhcCCCCCchH
Q 007400 505 MGRKVVDQLIDQNPQSSATH 524 (605)
Q Consensus 505 ~A~~~~~~~~~~~p~~~~~~ 524 (605)
+|..+|+++++..|+.+.+-
T Consensus 233 ~A~atl~qv~k~YP~t~aA~ 252 (262)
T COG1729 233 EACATLQQVIKRYPGTDAAK 252 (262)
T ss_pred HHHHHHHHHHHHCCCCHHHH
Confidence 88888888888888665543
No 239
>PRK11906 transcriptional regulator; Provisional
Probab=96.32 E-value=0.2 Score=48.62 Aligned_cols=142 Identities=10% Similarity=0.009 Sum_probs=82.4
Q ss_pred hHHHHHHHHhcC---CC-CC-cchHHHHHHHHHH---------cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC
Q 007400 368 LNDGRQVFDLTD---NK-EN-SMLWNTMISALTQ---------HGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSG 433 (605)
Q Consensus 368 ~~~A~~~~~~~~---~~-~~-~~~~~~l~~~~~~---------~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g 433 (605)
.+.|..+|.+.. .. |+ ...|..+..++.. ..+..+|.++.++.++.+ +-|......+..+....+
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TVDGKILAIMGLITGLSG 352 (458)
T ss_pred HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhhc
Confidence 456666776654 21 22 3445544444332 123345666667777643 225666666666667777
Q ss_pred cHHHHHHHHHHchHhhCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHh-CCCCCCHH---HHHHHHHHHHhcCCHHHHHH
Q 007400 434 LVQEGLTYFESMTHDLGIIPN-QEHHACLIELLAQAGCSDQLMNQLEK-MPYEHDSY---LWNALHGVCRIHGNIDMGRK 508 (605)
Q Consensus 434 ~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~~~~~---~~~~l~~~~~~~g~~~~A~~ 508 (605)
+++.|...|++.. .+.|| ..+|........-+|+.++|.+.+++ +...|... +..-.+..|.. ...+.|..
T Consensus 353 ~~~~a~~~f~rA~---~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~-~~~~~~~~ 428 (458)
T PRK11906 353 QAKVSHILFEQAK---IHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVP-NPLKNNIK 428 (458)
T ss_pred chhhHHHHHHHHh---hcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcC-CchhhhHH
Confidence 7888888888776 66777 55666666777777888888887777 44444322 22222333433 34666666
Q ss_pred HHHHHH
Q 007400 509 VVDQLI 514 (605)
Q Consensus 509 ~~~~~~ 514 (605)
+|-+-.
T Consensus 429 ~~~~~~ 434 (458)
T PRK11906 429 LYYKET 434 (458)
T ss_pred HHhhcc
Confidence 665533
No 240
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=96.28 E-value=0.0094 Score=34.59 Aligned_cols=32 Identities=9% Similarity=0.169 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 007400 488 YLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQ 519 (605)
Q Consensus 488 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 519 (605)
.+|..++.++...|++++|+..|+++++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 46788888999999999999999999999885
No 241
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.19 E-value=0.65 Score=42.10 Aligned_cols=146 Identities=13% Similarity=0.150 Sum_probs=84.3
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHchHhhCCCCCHHHHHHHHHHHHhcCChH
Q 007400 393 ALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSD 472 (605)
Q Consensus 393 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 472 (605)
.....|++.+|..+|....... +-+......++.+|...|+.+.|..++..+-.+ --.........-+..+.+.....
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~-~~~~~~~~l~a~i~ll~qaa~~~ 220 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQ-AQDKAAHGLQAQIELLEQAAATP 220 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCccc-chhhHHHHHHHHHHHHHHHhcCC
Confidence 3456677777777777777642 223456666777777777777777777766421 11111111222334445555444
Q ss_pred HHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCCCCchHHHHHHHHHhcCCchHH
Q 007400 473 QLMNQLEKMPYEH-DSYLWNALHGVCRIHGNIDMGRKVVDQLIDQ--NPQSSATHGLLSSIYSALGKGRLV 540 (605)
Q Consensus 473 ~A~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~g~~~~a 540 (605)
+..++-.++...| |...-..++..+...|+.+.|.+.+-.+++. .-.+...-..+..++...|.-+.+
T Consensus 221 ~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp~ 291 (304)
T COG3118 221 EIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADPL 291 (304)
T ss_pred CHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCHH
Confidence 4444444443233 5666666777777777777777777766665 233555666666666666654443
No 242
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.19 E-value=0.047 Score=45.20 Aligned_cols=71 Identities=27% Similarity=0.455 Sum_probs=48.7
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHchH----hhCCCCCHHHH
Q 007400 386 LWNTMISALTQHGYDEQAIRLFHDMVRSSVKP-DKITLAVILNACTHSGLVQEGLTYFESMTH----DLGIIPNQEHH 458 (605)
Q Consensus 386 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~p~~~~~ 458 (605)
+...++..+...|++++|..+++++.. ..| |...+..++.++...|+...|.+.|+++.. +.|+.|+..+-
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~--~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALA--LDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH--HSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 345566677788888888888888888 455 566888888888888998888888887642 45888876653
No 243
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.17 E-value=0.032 Score=46.77 Aligned_cols=89 Identities=12% Similarity=0.037 Sum_probs=68.3
Q ss_pred HHHhcCChHHHHHHHHhCC--CCC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCC
Q 007400 464 LLAQAGCSDQLMNQLEKMP--YEH-----DSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGK 536 (605)
Q Consensus 464 ~~~~~g~~~~A~~~~~~~~--~~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 536 (605)
-+.+.|++++|..-|.+.. +++ ....|..-+.+..+.+.++.|+.-..+++++.|....++..-+.+|.+..+
T Consensus 104 ~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek 183 (271)
T KOG4234|consen 104 ELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEK 183 (271)
T ss_pred HhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhh
Confidence 3556677777776665531 111 133455556677889999999999999999999888888888999999999
Q ss_pred chHHHHHHHHHHhCCC
Q 007400 537 GRLVEKVRQLINERQF 552 (605)
Q Consensus 537 ~~~a~~~~~~~~~~~~ 552 (605)
+++|++-|+++.+...
T Consensus 184 ~eealeDyKki~E~dP 199 (271)
T KOG4234|consen 184 YEEALEDYKKILESDP 199 (271)
T ss_pred HHHHHHHHHHHHHhCc
Confidence 9999999999987643
No 244
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=96.14 E-value=0.96 Score=40.73 Aligned_cols=193 Identities=17% Similarity=0.144 Sum_probs=102.0
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhcCC----CCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH-
Q 007400 353 IVMSSLIDMYSKCGCLNDGRQVFDLTDN----KENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILN- 427 (605)
Q Consensus 353 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~- 427 (605)
.........+...+.+..+...+..... ......+......+...++...+...+.........+ .........
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 138 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLALG 138 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHHH
Confidence 3444445555555555555555544321 1133344444555555555666666666655532222 111222222
Q ss_pred HHhccCcHHHHHHHHHHchHhhCCCC----CHHHHHHHHHHHHhcCChHHHHHHHHhCC-C-CC-CHHHHHHHHHHHHhc
Q 007400 428 ACTHSGLVQEGLTYFESMTHDLGIIP----NQEHHACLIELLAQAGCSDQLMNQLEKMP-Y-EH-DSYLWNALHGVCRIH 500 (605)
Q Consensus 428 ~~~~~g~~~~a~~~~~~~~~~~~~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~-~~-~~~~~~~l~~~~~~~ 500 (605)
++...|+++.|...+.+.. . ..| ....+......+...++.+.+...+.+.. . +. ....+..+...+...
T Consensus 139 ~~~~~~~~~~a~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (291)
T COG0457 139 ALYELGDYEEALELYEKAL-E--LDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKL 215 (291)
T ss_pred HHHHcCCHHHHHHHHHHHH-h--cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHc
Confidence 4556666666666666654 1 222 22333333333555666666666666542 1 22 245556666666666
Q ss_pred CCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 007400 501 GNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINE 549 (605)
Q Consensus 501 g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 549 (605)
++++.|...+..+....|.....+..++..+...|.++++...+.....
T Consensus 216 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (291)
T COG0457 216 GKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALE 264 (291)
T ss_pred ccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence 6777777777777777665455555666666655666666666665544
No 245
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.02 E-value=0.14 Score=46.72 Aligned_cols=148 Identities=9% Similarity=-0.045 Sum_probs=84.9
Q ss_pred HhcCChHHHHHHHHhcCCC--CCcchHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHH----HHHHHhccCcHH
Q 007400 363 SKCGCLNDGRQVFDLTDNK--ENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAV----ILNACTHSGLVQ 436 (605)
Q Consensus 363 ~~~g~~~~A~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~----l~~~~~~~g~~~ 436 (605)
...|+..+|...++++.+. .|..++..--.+|.-.|+.+.-...+++.... ..||...|.. +.-++...|-++
T Consensus 114 ~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred hccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccch
Confidence 3456666666666665432 25566666667777777777777777776654 3444432222 223344677777
Q ss_pred HHHHHHHHchHhhCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHhCCCCCC------HHHHHHHHHHHHhcCCHHHHHHH
Q 007400 437 EGLTYFESMTHDLGIIPN-QEHHACLIELLAQAGCSDQLMNQLEKMPYEHD------SYLWNALHGVCRIHGNIDMGRKV 509 (605)
Q Consensus 437 ~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~A~~~ 509 (605)
+|.+.-++.. .+.|. .-....+...+.-.|++.++.+++.+-....+ ...|-..+-.+...+.++.|+++
T Consensus 193 dAEk~A~ral---qiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleI 269 (491)
T KOG2610|consen 193 DAEKQADRAL---QINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEI 269 (491)
T ss_pred hHHHHHHhhc---cCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHH
Confidence 7777766665 34433 44555666667777777777777776541111 01111223344555777777777
Q ss_pred HHHHH
Q 007400 510 VDQLI 514 (605)
Q Consensus 510 ~~~~~ 514 (605)
|++-+
T Consensus 270 yD~ei 274 (491)
T KOG2610|consen 270 YDREI 274 (491)
T ss_pred HHHHH
Confidence 76543
No 246
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.02 E-value=0.39 Score=48.44 Aligned_cols=114 Identities=14% Similarity=0.108 Sum_probs=67.8
Q ss_pred CcHHHHHHHHHHchHhhCCCCCHHHH-HHHHHHHHhcCChHHHHHHHHhCCC------CCCHHHHHHHHHHHHhcCCHHH
Q 007400 433 GLVQEGLTYFESMTHDLGIIPNQEHH-ACLIELLAQAGCSDQLMNQLEKMPY------EHDSYLWNALHGVCRIHGNIDM 505 (605)
Q Consensus 433 g~~~~a~~~~~~~~~~~~~~p~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~~l~~~~~~~g~~~~ 505 (605)
.+.+.|.++++.+. ..-|+...| -.-.+.+...|++++|++.|++... +-....+.-++..+....++++
T Consensus 247 ~~~~~a~~lL~~~~---~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~ 323 (468)
T PF10300_consen 247 VPLEEAEELLEEML---KRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEE 323 (468)
T ss_pred CCHHHHHHHHHHHH---HhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHH
Confidence 45566666666666 224553333 2233445666777777777765421 1123344456666777788888
Q ss_pred HHHHHHHHHhcCCCCCchHH-HHHHHHHhcCCc-------hHHHHHHHHHHh
Q 007400 506 GRKVVDQLIDQNPQSSATHG-LLSSIYSALGKG-------RLVEKVRQLINE 549 (605)
Q Consensus 506 A~~~~~~~~~~~p~~~~~~~-~l~~~~~~~g~~-------~~a~~~~~~~~~ 549 (605)
|...+.++.+...-+...|. ..+.++...|+. ++|.+.++++..
T Consensus 324 A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 324 AAEYFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 88888888877655545544 345556667777 677777776643
No 247
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.95 E-value=0.54 Score=41.15 Aligned_cols=87 Identities=13% Similarity=-0.028 Sum_probs=49.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhCC-------CCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCCCCchH
Q 007400 457 HHACLIELLAQAGCSDQLMNQLEKMP-------YEHDS-YLWNALHGVCRIHGNIDMGRKVVDQLIDQ----NPQSSATH 524 (605)
Q Consensus 457 ~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~p~~~~~~ 524 (605)
.+..+.+.|.+..++++|-..+.+-. .-++. ..+-..+-.+.-..++..|...++.--+. .|++..+.
T Consensus 152 l~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~l 231 (308)
T KOG1585|consen 152 LYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSL 231 (308)
T ss_pred HHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHH
Confidence 34444556666666666665554431 11222 22333444455556777888887775554 55566666
Q ss_pred HHHHHHHHhcCCchHHHHHH
Q 007400 525 GLLSSIYSALGKGRLVEKVR 544 (605)
Q Consensus 525 ~~l~~~~~~~g~~~~a~~~~ 544 (605)
..|..+|- .|+.+++..++
T Consensus 232 enLL~ayd-~gD~E~~~kvl 250 (308)
T KOG1585|consen 232 ENLLTAYD-EGDIEEIKKVL 250 (308)
T ss_pred HHHHHHhc-cCCHHHHHHHH
Confidence 67776663 46666665544
No 248
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.94 E-value=0.11 Score=41.24 Aligned_cols=51 Identities=18% Similarity=0.199 Sum_probs=38.4
Q ss_pred CCCCHHHHHHHHHHHhccCcHHHHHHHHHHchHhhCCCCCHHHHHHHHHHH
Q 007400 415 VKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELL 465 (605)
Q Consensus 415 ~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~ 465 (605)
+.|+..+..+++.+|+..|++..|.++++.+.+.++++-+..+|..|+.-.
T Consensus 48 l~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 48 LYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWA 98 (126)
T ss_pred CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 567777888888888888888888888888877777766677777766543
No 249
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=95.87 E-value=0.13 Score=47.49 Aligned_cols=129 Identities=12% Similarity=0.053 Sum_probs=67.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCC---C--CHHHHHHHHHHHhccCcHHHHHHHHHHchH---hhCCCCCH----
Q 007400 388 NTMISALTQHGYDEQAIRLFHDMVRSSVK---P--DKITLAVILNACTHSGLVQEGLTYFESMTH---DLGIIPNQ---- 455 (605)
Q Consensus 388 ~~l~~~~~~~g~~~~a~~~~~~m~~~~~~---p--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~p~~---- 455 (605)
.++..++...+.++++++.|+...+---. | ....+..|...|....|+++|.-+..++.. ..++.--.
T Consensus 126 l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr 205 (518)
T KOG1941|consen 126 LSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYR 205 (518)
T ss_pred hhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHH
Confidence 34555666666777777777766542111 1 113566666667777777777666554431 11221111
Q ss_pred -HHHHHHHHHHHhcCChHHHHHHHHhCC----CCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 007400 456 -EHHACLIELLAQAGCSDQLMNQLEKMP----YEHDS----YLWNALHGVCRIHGNIDMGRKVVDQLIDQ 516 (605)
Q Consensus 456 -~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 516 (605)
.....+.-++...|...+|.+..++.. ...|. .....++..|...|+.+.|..-|+++...
T Consensus 206 ~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~ 275 (518)
T KOG1941|consen 206 AMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGT 275 (518)
T ss_pred HHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHH
Confidence 122233445556666666666655431 11222 23334566666777777777666666554
No 250
>PRK15331 chaperone protein SicA; Provisional
Probab=95.78 E-value=0.24 Score=40.82 Aligned_cols=91 Identities=11% Similarity=0.051 Sum_probs=52.2
Q ss_pred HHHHHhCCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhcccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCh
Q 007400 289 IAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCL 368 (605)
Q Consensus 289 ~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 368 (605)
...+...|++++|..+|+-+...+ ..+..-+..|..++-..+++++|...|......+ ..|+..+--...+|...|+.
T Consensus 44 Ay~~y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~l~l~~~ 121 (165)
T PRK15331 44 AYEFYNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFTGQCQLLMRKA 121 (165)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchHHHHHHHhCCH
Confidence 344556677777777777666533 2233334444445555666777776666665544 23333344456666667777
Q ss_pred HHHHHHHHhcCCC
Q 007400 369 NDGRQVFDLTDNK 381 (605)
Q Consensus 369 ~~A~~~~~~~~~~ 381 (605)
+.|+..|+....+
T Consensus 122 ~~A~~~f~~a~~~ 134 (165)
T PRK15331 122 AKARQCFELVNER 134 (165)
T ss_pred HHHHHHHHHHHhC
Confidence 7777766655544
No 251
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.74 E-value=3.2 Score=43.41 Aligned_cols=56 Identities=14% Similarity=0.221 Sum_probs=41.8
Q ss_pred HHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 007400 460 CLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQ 516 (605)
Q Consensus 460 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 516 (605)
.++..+.+..+.+++..+.+..+ +-++..|..++..+++.+.++.-.+...++++.
T Consensus 710 dl~~~~~q~~d~E~~it~~~~~g-~~~p~l~~~~L~yF~~~~~i~~~~~~v~~vl~~ 765 (933)
T KOG2114|consen 710 DLMLYFQQISDPETVITLCERLG-KEDPSLWLHALKYFVSEESIEDCYEIVYKVLEA 765 (933)
T ss_pred HHHHHHHHhhChHHHHHHHHHhC-ccChHHHHHHHHHHhhhcchhhHHHHHHHHHHH
Confidence 45566777788888888888887 347888888888888888777666666666553
No 252
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.68 E-value=1 Score=44.72 Aligned_cols=156 Identities=12% Similarity=0.137 Sum_probs=99.5
Q ss_pred HHHhcCChhHHHHHHHH-HHHcCCCCChhhHHHHHHHhhhcCChhHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCh
Q 007400 26 SLISKGQLSEAISSLDL-LAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSD 104 (605)
Q Consensus 26 ~~~~~g~~~~a~~~~~~-~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 104 (605)
..+-+|+++++.+.... -.-..+ +....+.+++.+.+.|-++.|+++- .++ ..-.....+.|++
T Consensus 270 ~av~~~d~~~v~~~i~~~~ll~~i--~~~~~~~i~~fL~~~G~~e~AL~~~---------~D~----~~rFeLAl~lg~L 334 (443)
T PF04053_consen 270 TAVLRGDFEEVLRMIAASNLLPNI--PKDQGQSIARFLEKKGYPELALQFV---------TDP----DHRFELALQLGNL 334 (443)
T ss_dssp HHHHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHS---------S-H----HHHHHHHHHCT-H
T ss_pred HHHHcCChhhhhhhhhhhhhcccC--ChhHHHHHHHHHHHCCCHHHHHhhc---------CCh----HHHhHHHHhcCCH
Confidence 55567888887776651 111112 3556788888888889888888872 122 2345566788999
Q ss_pred hHHHHHhccCCCCCchHHHHHHHHHHccCChHHHHHHHhhcCCCCceeHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC
Q 007400 105 VDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCN 184 (605)
Q Consensus 105 ~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~ 184 (605)
+.|.++.++.. +...|..|.+...+.|+++-|.+.|.+.. -|..|+-.|.-.|+.+...++.+.....|-
T Consensus 335 ~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~-----d~~~L~lLy~~~g~~~~L~kl~~~a~~~~~--- 404 (443)
T PF04053_consen 335 DIALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAK-----DFSGLLLLYSSTGDREKLSKLAKIAEERGD--- 404 (443)
T ss_dssp HHHHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT------HHHHHHHHHHCT-HHHHHHHHHHHHHTT----
T ss_pred HHHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhc-----CccccHHHHHHhCCHHHHHHHHHHHHHccC---
Confidence 99988887776 55688888899999999999998888875 467777778888888887777777666442
Q ss_pred hhhHHHHHHHHhccCChHHHHHHHH
Q 007400 185 EFSFAGILTICVKLEELKLTRQVHG 209 (605)
Q Consensus 185 ~~~~~~ll~~~~~~~~~~~a~~~~~ 209 (605)
++....++.-.|+.++..+++.
T Consensus 405 ---~n~af~~~~~lgd~~~cv~lL~ 426 (443)
T PF04053_consen 405 ---INIAFQAALLLGDVEECVDLLI 426 (443)
T ss_dssp ---HHHHHHHHHHHT-HHHHHHHHH
T ss_pred ---HHHHHHHHHHcCCHHHHHHHHH
Confidence 4444455555566666655543
No 253
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.54 E-value=0.54 Score=47.41 Aligned_cols=159 Identities=11% Similarity=0.062 Sum_probs=93.1
Q ss_pred HHHHHHHHhcCChHHHHHHHHhcCCCCCcc---------hHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHH
Q 007400 356 SSLIDMYSKCGCLNDGRQVFDLTDNKENSM---------LWNTMISALTQ----HGYDEQAIRLFHDMVRSSVKPDKITL 422 (605)
Q Consensus 356 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---------~~~~l~~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~ 422 (605)
..++...+-.|+-+.+++.+......++.. .|...+..++. ..+.+.|.++++.+.+ .-|+...|
T Consensus 192 ~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~--~yP~s~lf 269 (468)
T PF10300_consen 192 LKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLK--RYPNSALF 269 (468)
T ss_pred HHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHH--hCCCcHHH
Confidence 344444455555555555555433322222 23333333332 3466778888888887 46776544
Q ss_pred HHH-HHHHhccCcHHHHHHHHHHchHhhCCCC--CHHHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHH-H
Q 007400 423 AVI-LNACTHSGLVQEGLTYFESMTHDLGIIP--NQEHHACLIELLAQAGCSDQLMNQLEKMP--YEHDSYLWNALHG-V 496 (605)
Q Consensus 423 ~~l-~~~~~~~g~~~~a~~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~-~ 496 (605)
... .+.+...|+.+.|++.|++......--+ ....+..++..+.-.+++++|.+.+.++. ...+...|..+.. +
T Consensus 270 l~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~c 349 (468)
T PF10300_consen 270 LFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAAAC 349 (468)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 433 4456677888888888887652111111 23455667777888888998888888874 2333444444433 3
Q ss_pred HHhcCCH-------HHHHHHHHHHHhc
Q 007400 497 CRIHGNI-------DMGRKVVDQLIDQ 516 (605)
Q Consensus 497 ~~~~g~~-------~~A~~~~~~~~~~ 516 (605)
+...|+. ++|.++++++-..
T Consensus 350 ~~~l~~~~~~~~~~~~a~~l~~~vp~l 376 (468)
T PF10300_consen 350 LLMLGREEEAKEHKKEAEELFRKVPKL 376 (468)
T ss_pred HHhhccchhhhhhHHHHHHHHHHHHHH
Confidence 3456777 7777777777654
No 254
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.49 E-value=0.77 Score=45.63 Aligned_cols=133 Identities=19% Similarity=0.148 Sum_probs=70.3
Q ss_pred HHHHhcCChHHHHHHHH--HHHhCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCC
Q 007400 158 IGYAKSGAVEEGLKFYK--VLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGE 235 (605)
Q Consensus 158 ~~~~~~~~~~~a~~~~~--~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 235 (605)
....-+++++++.+..+ .+.. .+ +....+.++..+.+.|..+.|.++.. |.. .-.....+.|+
T Consensus 269 k~av~~~d~~~v~~~i~~~~ll~-~i--~~~~~~~i~~fL~~~G~~e~AL~~~~---------D~~---~rFeLAl~lg~ 333 (443)
T PF04053_consen 269 KTAVLRGDFEEVLRMIAASNLLP-NI--PKDQGQSIARFLEKKGYPELALQFVT---------DPD---HRFELALQLGN 333 (443)
T ss_dssp HHHHHTT-HHH-----HHHHTGG-G----HHHHHHHHHHHHHTT-HHHHHHHSS----------HH---HHHHHHHHCT-
T ss_pred HHHHHcCChhhhhhhhhhhhhcc-cC--ChhHHHHHHHHHHHCCCHHHHHhhcC---------ChH---HHhHHHHhcCC
Confidence 34455677777666654 1111 11 24446677777777777777777632 221 23455667777
Q ss_pred hHHHHHHHhhcCCCCcchHHHHHHHHHhcCChHHHHHHHhhCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCC
Q 007400 236 LSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILR 312 (605)
Q Consensus 236 ~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 312 (605)
++.|.++.+++. ++..|..|.....+.|+++-|++.|.+... +..|+-.|.-.|+.+.-.++.+.....|
T Consensus 334 L~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d-----~~~L~lLy~~~g~~~~L~kl~~~a~~~~ 403 (443)
T PF04053_consen 334 LDIALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD-----FSGLLLLYSSTGDREKLSKLAKIAEERG 403 (443)
T ss_dssp HHHHHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT------HHHHHHHHHHCT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC-----ccccHHHHHHhCCHHHHHHHHHHHHHcc
Confidence 777776666554 444666666666666666666666666543 4445555556666655555555555443
No 255
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=95.44 E-value=2.8 Score=40.80 Aligned_cols=149 Identities=11% Similarity=0.029 Sum_probs=78.9
Q ss_pred CcchHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHhccCcHHHHHHHHHHchHhhCCCCC--HHH
Q 007400 383 NSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKP---DKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPN--QEH 457 (605)
Q Consensus 383 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~ 457 (605)
...+|..++..+.+.|.++.|...+.++...+..+ .+.....-+......|+..+|+..++..... .+..+ ...
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~-~~~~~~~~~~ 223 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC-RLSKNIDSIS 223 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH-Hhhhcccccc
Confidence 34567777777777788887777777776643211 2334444455556667777777777766631 11111 111
Q ss_pred HHHHHHHHHhcCChHHHHHH-HHhCCCCCCHHHHHHHHHHHHhc------CCHHHHHHHHHHHHhcCCCCCchHHHHHHH
Q 007400 458 HACLIELLAQAGCSDQLMNQ-LEKMPYEHDSYLWNALHGVCRIH------GNIDMGRKVVDQLIDQNPQSSATHGLLSSI 530 (605)
Q Consensus 458 ~~~l~~~~~~~g~~~~A~~~-~~~~~~~~~~~~~~~l~~~~~~~------g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 530 (605)
...+...+.. ..+..... ........-..++..++..+... +..+.+...|+++.+..|.....|..++..
T Consensus 224 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~ 301 (352)
T PF02259_consen 224 NAELKSGLLE--SLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALF 301 (352)
T ss_pred HHHHhhcccc--ccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHH
Confidence 1111100000 00000000 00000000122333344444444 788999999999999999888888888888
Q ss_pred HHhc
Q 007400 531 YSAL 534 (605)
Q Consensus 531 ~~~~ 534 (605)
+.+.
T Consensus 302 ~~~~ 305 (352)
T PF02259_consen 302 NDKL 305 (352)
T ss_pred HHHH
Confidence 7653
No 256
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.43 E-value=2 Score=39.09 Aligned_cols=117 Identities=9% Similarity=0.066 Sum_probs=73.1
Q ss_pred HHhcccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCCCCCcchHH---HHHHHHHHcCCHHH
Q 007400 326 ACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWN---TMISALTQHGYDEQ 402 (605)
Q Consensus 326 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---~l~~~~~~~g~~~~ 402 (605)
.....|++..|...|+...... +-+...-..++.+|...|+.+.|..++..++..-....+. .-|..+.+.....+
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~ 221 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPE 221 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCC
Confidence 4456778888888888877765 3445666678888999999999999998887542222222 22334444444443
Q ss_pred HHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHch
Q 007400 403 AIRLFHDMVRSSVKP-DKITLAVILNACTHSGLVQEGLTYFESMT 446 (605)
Q Consensus 403 a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 446 (605)
...+-++.-. .| |...-..+...+...|+.+.|.+.+-.+.
T Consensus 222 ~~~l~~~~aa---dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l 263 (304)
T COG3118 222 IQDLQRRLAA---DPDDVEAALALADQLHLVGRNEAALEHLLALL 263 (304)
T ss_pred HHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3333333333 45 45566666677777777777776665555
No 257
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=95.41 E-value=1.2 Score=38.41 Aligned_cols=178 Identities=17% Similarity=0.121 Sum_probs=100.2
Q ss_pred CChHHHHHHHHh-cCCCC-CcchHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCcHHHHHHHH
Q 007400 366 GCLNDGRQVFDL-TDNKE-NSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDK-ITLAVILNACTHSGLVQEGLTYF 442 (605)
Q Consensus 366 g~~~~A~~~~~~-~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~ 442 (605)
|-+.-|+--|.. +...| -+..||-+.--+...|+++.|.+.|+...+ +.|.. .+...-.-++.-.|+++-|.+-+
T Consensus 79 GL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~E--LDp~y~Ya~lNRgi~~YY~gR~~LAq~d~ 156 (297)
T COG4785 79 GLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLE--LDPTYNYAHLNRGIALYYGGRYKLAQDDL 156 (297)
T ss_pred hHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhc--cCCcchHHHhccceeeeecCchHhhHHHH
Confidence 444444444432 22233 345677777778888999999999988888 55532 33333333455678888888766
Q ss_pred HHchHhhCCCCCHHHHHHHHHHH-HhcCChHHHHHHH-HhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 007400 443 ESMTHDLGIIPNQEHHACLIELL-AQAGCSDQLMNQL-EKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQS 520 (605)
Q Consensus 443 ~~~~~~~~~~p~~~~~~~l~~~~-~~~g~~~~A~~~~-~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 520 (605)
...- .-.|+.. |..|.-.+ .+.-++.+|..-+ ++.. ..|..-|...+..+.- |++. -..+++++..-..++
T Consensus 157 ~~fY---Q~D~~DP-fR~LWLYl~E~k~dP~~A~tnL~qR~~-~~d~e~WG~~iV~~yL-gkiS-~e~l~~~~~a~a~~n 229 (297)
T COG4785 157 LAFY---QDDPNDP-FRSLWLYLNEQKLDPKQAKTNLKQRAE-KSDKEQWGWNIVEFYL-GKIS-EETLMERLKADATDN 229 (297)
T ss_pred HHHH---hcCCCCh-HHHHHHHHHHhhCCHHHHHHHHHHHHH-hccHhhhhHHHHHHHH-hhcc-HHHHHHHHHhhccch
Confidence 6655 2233322 22222222 2334666666544 4443 3444444332222211 2111 123344444332222
Q ss_pred -------CchHHHHHHHHHhcCCchHHHHHHHHHHhCCC
Q 007400 521 -------SATHGLLSSIYSALGKGRLVEKVRQLINERQF 552 (605)
Q Consensus 521 -------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 552 (605)
.++|..|+.-+...|+.++|..+|+......+
T Consensus 230 ~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiannV 268 (297)
T COG4785 230 TSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANNV 268 (297)
T ss_pred HHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhH
Confidence 36888999999999999999999998876544
No 258
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=95.36 E-value=0.12 Score=45.94 Aligned_cols=97 Identities=16% Similarity=0.234 Sum_probs=72.2
Q ss_pred HHHhhcC--CCCceeHHHHHHHHHh-----cCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccC-------------
Q 007400 140 NLFDNMA--ERDVVSWNTMIIGYAK-----SGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLE------------- 199 (605)
Q Consensus 140 ~~~~~~~--~~~~~~~~~li~~~~~-----~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~------------- 199 (605)
..|.... ++|-.+|-..+..+.. .+..+-....++.|.+.|+.-|..+|+.||+.+-+..
T Consensus 55 ~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~H 134 (406)
T KOG3941|consen 55 KQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLH 134 (406)
T ss_pred hhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhh
Confidence 3444443 3555566666655543 4567777778888999999999999999998775432
Q ss_pred ---ChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCh
Q 007400 200 ---ELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGEL 236 (605)
Q Consensus 200 ---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 236 (605)
+-.-+.+++++|...|+.||..+-..|++++++.|..
T Consensus 135 YP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 135 YPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred CchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhcccccc
Confidence 2245778999999999999999999999999887764
No 259
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=95.33 E-value=2 Score=38.53 Aligned_cols=219 Identities=15% Similarity=0.123 Sum_probs=143.3
Q ss_pred CChHHHHHHHHHHHHCCCC-CChHHHHHHHHHHhcccchHHHHHHHHHHHHc-CCCCChhHHHHHHHHHHhcCChHHHHH
Q 007400 296 GLGQKALELFTRMMILRIR-PNQHTFSSCLCACASIVSLKHGKQVHGFLIRT-NFRSNTIVMSSLIDMYSKCGCLNDGRQ 373 (605)
Q Consensus 296 g~~~~a~~~~~~m~~~g~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~ 373 (605)
+....+...+......... .....+......+...+.+..+...+...... ........+......+...+++..+..
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE 116 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence 3444444555444443211 12345555566666666676666666666542 224445556666667777777778888
Q ss_pred HHHhcCCC-CC-cchHHHHHH-HHHHcCCHHHHHHHHHHHHHCCCCC----CHHHHHHHHHHHhccCcHHHHHHHHHHch
Q 007400 374 VFDLTDNK-EN-SMLWNTMIS-ALTQHGYDEQAIRLFHDMVRSSVKP----DKITLAVILNACTHSGLVQEGLTYFESMT 446 (605)
Q Consensus 374 ~~~~~~~~-~~-~~~~~~l~~-~~~~~g~~~~a~~~~~~m~~~~~~p----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 446 (605)
.+...... ++ ......... .+...|+++.|...+.+... ..| ....+......+...++.+.+...+....
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 194 (291)
T COG0457 117 LLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALE--LDPELNELAEALLALGALLEALGRYEEALELLEKAL 194 (291)
T ss_pred HHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHH
Confidence 77765532 12 222333333 68889999999999998866 333 23344444455677889999999999888
Q ss_pred HhhCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHhCC-CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 007400 447 HDLGIIPN--QEHHACLIELLAQAGCSDQLMNQLEKMP-YEHD-SYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQ 519 (605)
Q Consensus 447 ~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 519 (605)
...++ ...+..+...+...++++.|...+.... ..|+ ...+..+...+...++.+.+...+.+..+..|.
T Consensus 195 ---~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 195 ---KLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred ---hhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 33333 6778888888999999999999888763 2343 455555666666777899999999999999885
No 260
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=95.27 E-value=0.071 Score=41.31 Aligned_cols=57 Identities=11% Similarity=-0.004 Sum_probs=52.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 007400 494 HGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINER 550 (605)
Q Consensus 494 ~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 550 (605)
+.+....|+.+.|++.|.+++.+.|.++.+|+.-+.++.-+|+.++|+.-+.+..+.
T Consensus 50 ~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleL 106 (175)
T KOG4555|consen 50 AIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALEL 106 (175)
T ss_pred HHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHh
Confidence 456788999999999999999999999999999999999999999999999888664
No 261
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=95.20 E-value=1.2 Score=37.17 Aligned_cols=134 Identities=11% Similarity=0.104 Sum_probs=82.2
Q ss_pred HHHHHHHHHcCCCCChhhHHHHHHHhhhcCChhHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhc-CChhHHHHHhccCC
Q 007400 37 ISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKC-GSDVDARKVFDKIP 115 (605)
Q Consensus 37 ~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~ 115 (605)
.+++..+.+.+++|+...+..++..+.+.|.+....+ ++..+.-+|+......+++.-... .-..-|..++.++.
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~q----llq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~ 89 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQ----LLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLG 89 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHH----HHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhh
Confidence 4666777888999999999999999999998765544 455666666653333333321110 01222333333333
Q ss_pred CCCchHHHHHHHHHHccCChHHHHHHHhhcCCCCceeHHHHHHHHHhcCChHHHHHHHHHHHh
Q 007400 116 VKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRR 178 (605)
Q Consensus 116 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 178 (605)
..+..+++.+...|++-+|+++.+.....+...-..++.+..+.++...-..+|+-..+
T Consensus 90 ----~~~~~iievLL~~g~vl~ALr~ar~~~~~~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 90 ----TAYEEIIEVLLSKGQVLEALRYARQYHKVDSVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred ----hhHHHHHHHHHhCCCHHHHHHHHHHcCCcccCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 24556667777777777777777776555555556666666666666655555555544
No 262
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=95.20 E-value=1.9 Score=40.26 Aligned_cols=124 Identities=14% Similarity=0.094 Sum_probs=61.3
Q ss_pred HHHHHHHhcCChHHHHHHHHhcC----CCC----CcchHHHHHHHHHHcCCHHHHHHHHHHHHHC--CCCC-CH------
Q 007400 357 SLIDMYSKCGCLNDGRQVFDLTD----NKE----NSMLWNTMISALTQHGYDEQAIRLFHDMVRS--SVKP-DK------ 419 (605)
Q Consensus 357 ~l~~~~~~~g~~~~A~~~~~~~~----~~~----~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~--~~~p-~~------ 419 (605)
++..++...+.++.+++.|+... ... ....+..|...|.+..|+++|.-+..+..+. .+.. |.
T Consensus 127 ~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~ 206 (518)
T KOG1941|consen 127 SMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRA 206 (518)
T ss_pred hHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHH
Confidence 34445555555555555555321 111 1235566666666666666666554443321 0111 11
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHchHh---hCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHh
Q 007400 420 ITLAVILNACTHSGLVQEGLTYFESMTHD---LGIIPN-QEHHACLIELLAQAGCSDQLMNQLEK 480 (605)
Q Consensus 420 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~ 480 (605)
.....+.-++...|...+|.+.-++..+- .|-.+. ......+.+.|...|+.+.|..-|+.
T Consensus 207 ~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~ 271 (518)
T KOG1941|consen 207 MSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQ 271 (518)
T ss_pred HHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHH
Confidence 12233344555666666666666555421 122222 33445566667777777776666654
No 263
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=95.19 E-value=3 Score=40.95 Aligned_cols=145 Identities=10% Similarity=0.078 Sum_probs=79.8
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhcccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCC
Q 007400 288 LIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGC 367 (605)
Q Consensus 288 l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 367 (605)
++.-.-+..++..-++.-++.++ +.|+..+.-.++ +--......++++++++..+.|-.. +.+...
T Consensus 174 IMq~AWRERnp~aRIkaA~eALe--i~pdCAdAYILL-AEEeA~Ti~Eae~l~rqAvkAgE~~-----------lg~s~~ 239 (539)
T PF04184_consen 174 IMQKAWRERNPQARIKAAKEALE--INPDCADAYILL-AEEEASTIVEAEELLRQAVKAGEAS-----------LGKSQF 239 (539)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHH--hhhhhhHHHhhc-ccccccCHHHHHHHHHHHHHHHHHh-----------hchhhh
Confidence 33334455556666666666665 356554433222 3334556788888888887655110 000000
Q ss_pred hHHHHHHHHhcCCC---CCcchHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHH
Q 007400 368 LNDGRQVFDLTDNK---ENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKP-DKITLAVILNACTHSGLVQEGLTYFE 443 (605)
Q Consensus 368 ~~~A~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~ 443 (605)
.+..-..++....+ +-..+-..+..++.+.|+.++|++.+++|.+....- +......|+.++...+.+.++..++.
T Consensus 240 ~~~~g~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~ 319 (539)
T PF04184_consen 240 LQHHGHFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLA 319 (539)
T ss_pred hhcccchhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHH
Confidence 00000111111111 122333446666777888888888888887642111 22367778888888888888888888
Q ss_pred Hch
Q 007400 444 SMT 446 (605)
Q Consensus 444 ~~~ 446 (605)
+..
T Consensus 320 kYd 322 (539)
T PF04184_consen 320 KYD 322 (539)
T ss_pred Hhc
Confidence 765
No 264
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=95.12 E-value=1.4 Score=35.49 Aligned_cols=90 Identities=13% Similarity=0.009 Sum_probs=70.8
Q ss_pred CChHHHHHHHHHHHhcCChhHHHHHHHHHHHcC--CCCChhhHHHHHHHhhhcCChhHHHHHHHHHHHhCCCCCchhhHH
Q 007400 15 LPNNCLIQSFLSLISKGQLSEAISSLDLLAQRG--IRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSN 92 (605)
Q Consensus 15 ~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~g--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 92 (605)
.|...+.......++.|++.+|.+.|+.+...- .+-...+-..++.++.+.+++++|...++..++.+|..+.. .|.
T Consensus 8 ~~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~v-dYa 86 (142)
T PF13512_consen 8 KSPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNV-DYA 86 (142)
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCc-cHH
Confidence 344555666667779999999999999998753 12244566778889999999999999999999999998887 888
Q ss_pred HHHHHHHhcCChh
Q 007400 93 HLISMYFKCGSDV 105 (605)
Q Consensus 93 ~l~~~~~~~g~~~ 105 (605)
..+.+++.....+
T Consensus 87 ~Y~~gL~~~~~~~ 99 (142)
T PF13512_consen 87 YYMRGLSYYEQDE 99 (142)
T ss_pred HHHHHHHHHHHhh
Confidence 8888877654443
No 265
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.03 E-value=5.4 Score=41.80 Aligned_cols=51 Identities=8% Similarity=0.123 Sum_probs=33.4
Q ss_pred HHHHHHHhcCChHHHHHHHHhcCCCCCcchHHHHHHHHHHcCCHHHHHHHHH
Q 007400 357 SLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFH 408 (605)
Q Consensus 357 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 408 (605)
-++..+.+..+++.+..+.+...+. ++..|-.++..+++.+..+...+...
T Consensus 710 dl~~~~~q~~d~E~~it~~~~~g~~-~p~l~~~~L~yF~~~~~i~~~~~~v~ 760 (933)
T KOG2114|consen 710 DLMLYFQQISDPETVITLCERLGKE-DPSLWLHALKYFVSEESIEDCYEIVY 760 (933)
T ss_pred HHHHHHHHhhChHHHHHHHHHhCcc-ChHHHHHHHHHHhhhcchhhHHHHHH
Confidence 3556666667777777777777666 77777777777777765554444333
No 266
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=95.01 E-value=0.052 Score=31.36 Aligned_cols=32 Identities=13% Similarity=0.269 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 007400 488 YLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQ 519 (605)
Q Consensus 488 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 519 (605)
.+|..++..+...|++++|...|+++++++|+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 35677788888888888888888888888774
No 267
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=94.90 E-value=1.7 Score=35.44 Aligned_cols=127 Identities=8% Similarity=0.048 Sum_probs=69.1
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHchHhhCCCCCHHHHHHHHHHH
Q 007400 386 LWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELL 465 (605)
Q Consensus 386 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~ 465 (605)
....++..+...+.......+++.+...+ ..+....+.++..|++.+ .......++. .++.......+..+
T Consensus 9 ~~~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~-------~~~~yd~~~~~~~c 79 (140)
T smart00299 9 DVSEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN-------KSNHYDIEKVGKLC 79 (140)
T ss_pred CHHHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh-------ccccCCHHHHHHHH
Confidence 34556666666677777777777777665 245556777777776543 3344444442 01112223355666
Q ss_pred HhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 007400 466 AQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIH-GNIDMGRKVVDQLIDQNPQSSATHGLLSSIYS 532 (605)
Q Consensus 466 ~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 532 (605)
.+.+.++++.-++.+++. +...+..+... ++.+.|.+++++ +.++..|..++..+.
T Consensus 80 ~~~~l~~~~~~l~~k~~~------~~~Al~~~l~~~~d~~~a~~~~~~-----~~~~~lw~~~~~~~l 136 (140)
T smart00299 80 EKAKLYEEAVELYKKDGN------FKDAIVTLIEHLGNYEKAIEYFVK-----QNNPELWAEVLKALL 136 (140)
T ss_pred HHcCcHHHHHHHHHhhcC------HHHHHHHHHHcccCHHHHHHHHHh-----CCCHHHHHHHHHHHH
Confidence 666677777777766651 11222223333 666777666664 224455555555443
No 268
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=94.89 E-value=0.83 Score=44.63 Aligned_cols=153 Identities=12% Similarity=0.104 Sum_probs=85.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHchHhhCCCCCHHHHHHHHHHH--H
Q 007400 389 TMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELL--A 466 (605)
Q Consensus 389 ~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~--~ 466 (605)
.+|.-..+..+...-++.-++.++ +.||..+...++ +-.......++.+++++..+. +- ..+ .... .
T Consensus 173 ~IMq~AWRERnp~aRIkaA~eALe--i~pdCAdAYILL-AEEeA~Ti~Eae~l~rqAvkA-gE----~~l---g~s~~~~ 241 (539)
T PF04184_consen 173 EIMQKAWRERNPQARIKAAKEALE--INPDCADAYILL-AEEEASTIVEAEELLRQAVKA-GE----ASL---GKSQFLQ 241 (539)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHH--hhhhhhHHHhhc-ccccccCHHHHHHHHHHHHHH-HH----Hhh---chhhhhh
Confidence 344445566677777777777777 667664332222 223345577888888877622 10 000 0000 0
Q ss_pred hcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--CCchHHHHHHHHHhcCCchHHHHHH
Q 007400 467 QAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQ--SSATHGLLSSIYSALGKGRLVEKVR 544 (605)
Q Consensus 467 ~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~~a~~~~ 544 (605)
..|.. .+.+.+-..++-..+-..++.++.+.|+.++|.+.++.+++..|. +......|+.++...+.+.++..++
T Consensus 242 ~~g~~---~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL 318 (539)
T PF04184_consen 242 HHGHF---WEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALL 318 (539)
T ss_pred cccch---hhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHH
Confidence 11111 111111111222334445677777888888888888888877654 3456777888888888888888888
Q ss_pred HHHHhCCCcCC
Q 007400 545 QLINERQFKKE 555 (605)
Q Consensus 545 ~~~~~~~~~~~ 555 (605)
.+..+....+.
T Consensus 319 ~kYdDi~lpkS 329 (539)
T PF04184_consen 319 AKYDDISLPKS 329 (539)
T ss_pred HHhccccCCch
Confidence 77654333333
No 269
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=94.77 E-value=0.46 Score=37.75 Aligned_cols=78 Identities=9% Similarity=0.063 Sum_probs=39.4
Q ss_pred hhHHHHHHHHHhCCChHHHHHHHHHHH---------------HCCCCCChHHHHHHHHHHhcccchHHHHHHHHHHHH-c
Q 007400 283 VSWTTLIAGYTRNGLGQKALELFTRMM---------------ILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIR-T 346 (605)
Q Consensus 283 ~~~~~l~~~~~~~g~~~~a~~~~~~m~---------------~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-~ 346 (605)
.++.+++.++++.|+.+....+++..= .....|+..+..+++.+|+..+++..|.++++.+.+ .
T Consensus 3 ~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y 82 (126)
T PF12921_consen 3 ELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKY 82 (126)
T ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHc
Confidence 344555555555555555555554321 122345555555555555555555555555555443 3
Q ss_pred CCCCChhHHHHHHH
Q 007400 347 NFRSNTIVMSSLID 360 (605)
Q Consensus 347 ~~~~~~~~~~~l~~ 360 (605)
+++.+..+|..|++
T Consensus 83 ~I~i~~~~W~~Ll~ 96 (126)
T PF12921_consen 83 PIPIPKEFWRRLLE 96 (126)
T ss_pred CCCCCHHHHHHHHH
Confidence 44444445554443
No 270
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=94.59 E-value=0.22 Score=32.23 Aligned_cols=51 Identities=16% Similarity=0.062 Sum_probs=41.3
Q ss_pred hHHHHHHHHHhcCCchHHHHHHHHHHhCCCcCCCceeEEEECCEEEEEEeCCCCCcchHHHHHHHHHHHHHHhhCCC
Q 007400 523 THGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQMGEDAP 599 (605)
Q Consensus 523 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 599 (605)
....++.++.+.|++++|.+..+.+.+. +|+..++....+.+..+++.+|.
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~--------------------------eP~N~Qa~~L~~~i~~~i~kdgl 53 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEI--------------------------EPDNRQAQSLKELIEDKIQKDGL 53 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH--------------------------TTS-HHHHHHHHHHHHHHHHTTT
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhh--------------------------CCCcHHHHHHHHHHHHHHhccCC
Confidence 4567899999999999999999999873 67778888888888888888874
No 271
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.54 E-value=0.38 Score=44.09 Aligned_cols=161 Identities=13% Similarity=0.049 Sum_probs=122.0
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHchHhhCCCCCHHHH----HHHHHHHHhcC
Q 007400 394 LTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHH----ACLIELLAQAG 469 (605)
Q Consensus 394 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~----~~l~~~~~~~g 469 (605)
...+|+..+|...++++++. .+.|...+...-.+|...|+...-...++++.. ...|+...| ..+.-++..+|
T Consensus 113 ~~~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip--~wn~dlp~~sYv~GmyaFgL~E~g 189 (491)
T KOG2610|consen 113 LWGRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIP--KWNADLPCYSYVHGMYAFGLEECG 189 (491)
T ss_pred hhccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhcc--ccCCCCcHHHHHHHHHHhhHHHhc
Confidence 45688999999999999985 455777888888999999999999999999883 335554433 34445567899
Q ss_pred ChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC----CCchHHHHHHHHHhcCCchHHHHH
Q 007400 470 CSDQLMNQLEKMP--YEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQ----SSATHGLLSSIYSALGKGRLVEKV 543 (605)
Q Consensus 470 ~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~a~~~ 543 (605)
-+++|.+.-++.. .+.|...-.+....+...|++.++.++..+--..-.+ -.--|.+.+-.+...+.++.|+++
T Consensus 190 ~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleI 269 (491)
T KOG2610|consen 190 IYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEI 269 (491)
T ss_pred cchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHH
Confidence 9999999998863 3456777788888999999999999998876554211 123455778888889999999999
Q ss_pred HHHHHhCCCcCCCc
Q 007400 544 RQLINERQFKKEQA 557 (605)
Q Consensus 544 ~~~~~~~~~~~~~~ 557 (605)
|+.-.-....++.+
T Consensus 270 yD~ei~k~l~k~Da 283 (491)
T KOG2610|consen 270 YDREIWKRLEKDDA 283 (491)
T ss_pred HHHHHHHHhhccch
Confidence 98664444555554
No 272
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=94.51 E-value=0.43 Score=42.63 Aligned_cols=97 Identities=8% Similarity=0.085 Sum_probs=75.2
Q ss_pred HHHhhCC--CCChhhHHHHHHHHHh-----CCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccc-------------
Q 007400 272 KLFNEMP--EKNPVSWTTLIAGYTR-----NGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIV------------- 331 (605)
Q Consensus 272 ~~~~~~~--~~~~~~~~~l~~~~~~-----~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~------------- 331 (605)
+.|.... ++|-.+|-+.+..+.. .++.+-....++.|.+-|+.-|..+|+.|+..+-+..
T Consensus 55 ~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~H 134 (406)
T KOG3941|consen 55 KQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLH 134 (406)
T ss_pred hhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhh
Confidence 4455554 4566677777766654 3667777788889999999999999999998875532
Q ss_pred ---chHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCh
Q 007400 332 ---SLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCL 368 (605)
Q Consensus 332 ---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 368 (605)
+-+-+..++++|..+|+.||..+-..|++++.+.+..
T Consensus 135 YP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 135 YPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred CchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhcccccc
Confidence 2355779999999999999999999999999987754
No 273
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=94.50 E-value=11 Score=44.78 Aligned_cols=307 Identities=10% Similarity=0.090 Sum_probs=169.5
Q ss_pred HHHHHHHhcCChHHHHHHHhhcC----CCC--cchHHHHHHHHHhcCChHHHHHHHhh-CCCCChhhHHHHHHHHHhCCC
Q 007400 225 SIVDAYAKCGELSDARRLFDETD----ARD--VLTWTTMVSGYAKLGDMESASKLFNE-MPEKNPVSWTTLIAGYTRNGL 297 (605)
Q Consensus 225 ~l~~~~~~~g~~~~a~~~~~~~~----~~~--~~~~~~li~~~~~~~~~~~A~~~~~~-~~~~~~~~~~~l~~~~~~~g~ 297 (605)
.+..+-.+++.+.+|...++.-. ..+ ..-+..+...|+..++.|....+... ...++. ..-|......|+
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~~sl---~~qil~~e~~g~ 1464 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFADPSL---YQQILEHEASGN 1464 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcCccH---HHHHHHHHhhcc
Confidence 45557778888999988888732 111 12233444478888888877777763 333332 233445667899
Q ss_pred hHHHHHHHHHHHHCCCCCChHHHHHHHHHHhcccchHHHHHHHHHHHHcCCCCChhHH-HHHHHHHHhcCChHHHHHHHH
Q 007400 298 GQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVM-SSLIDMYSKCGCLNDGRQVFD 376 (605)
Q Consensus 298 ~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~A~~~~~ 376 (605)
++.|...|+.+.+.+ ++...+++-++......|.+....-..+-..... .+....+ +.=+.+-.+.++++.......
T Consensus 1465 ~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~-se~~~~~~s~~~eaaW~l~qwD~~e~~l~ 1542 (2382)
T KOG0890|consen 1465 WADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINR-SEEVDELNSLGVEAAWRLSQWDLLESYLS 1542 (2382)
T ss_pred HHHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhcc-CHHHHHHHHHHHHHHhhhcchhhhhhhhh
Confidence 999999999988764 3346677777777777777766665444333322 2222222 333445567777777666655
Q ss_pred hcCCCCCcchHHHH--HHHHHHcCCHH--HHHHHHHHHHHCCCCC--------C-HHHHHHHHHHHhccCcHHHHHHHHH
Q 007400 377 LTDNKENSMLWNTM--ISALTQHGYDE--QAIRLFHDMVRSSVKP--------D-KITLAVILNACTHSGLVQEGLTYFE 443 (605)
Q Consensus 377 ~~~~~~~~~~~~~l--~~~~~~~g~~~--~a~~~~~~m~~~~~~p--------~-~~~~~~l~~~~~~~g~~~~a~~~~~ 443 (605)
.. +..+|... +..+.+..+-+ .-.+..+.+.+.-+.| + ...|..++....-. +.+.-.+.
T Consensus 1543 ---~~-n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~-el~~~~~~-- 1615 (2382)
T KOG0890|consen 1543 ---DR-NIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLL-ELENSIEE-- 1615 (2382)
T ss_pred ---cc-cccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHH-HHHHHHHH--
Confidence 22 44555544 22332222211 1112333333221111 0 01222222221110 00111111
Q ss_pred HchHhhCCCCCHH------HHHHHHHHHHhcCChHHHHHHH---Hh------CC---CCCCHHHHHHHHHHHHhcCCHHH
Q 007400 444 SMTHDLGIIPNQE------HHACLIELLAQAGCSDQLMNQL---EK------MP---YEHDSYLWNALHGVCRIHGNIDM 505 (605)
Q Consensus 444 ~~~~~~~~~p~~~------~~~~l~~~~~~~g~~~~A~~~~---~~------~~---~~~~~~~~~~l~~~~~~~g~~~~ 505 (605)
..++.++.. .|..-+ .+.+...++.+-+ .+ |. ...-..+|...+..++..|.++.
T Consensus 1616 ----l~~~s~~~~s~~~sd~W~~Rl---~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~ 1688 (2382)
T KOG0890|consen 1616 ----LKKVSYDEDSANNSDNWKNRL---ERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQR 1688 (2382)
T ss_pred ----hhccCccccccccchhHHHHH---HHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHH
Confidence 113333321 121111 1222222222211 11 11 12236689999999999999999
Q ss_pred HHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCCC
Q 007400 506 GRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQF 552 (605)
Q Consensus 506 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 552 (605)
|....-++.+..+ +..+...+..+...|+-..|+.++++-.+...
T Consensus 1689 A~nall~A~e~r~--~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~ 1733 (2382)
T KOG0890|consen 1689 AQNALLNAKESRL--PEIVLERAKLLWQTGDELNALSVLQEILSKNF 1733 (2382)
T ss_pred HHHHHHhhhhccc--chHHHHHHHHHHhhccHHHHHHHHHHHHHhhc
Confidence 9999888887763 78899999999999999999999998886654
No 274
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=94.48 E-value=2.2 Score=34.78 Aligned_cols=40 Identities=18% Similarity=0.172 Sum_probs=18.3
Q ss_pred HHHHhcccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHh
Q 007400 324 LCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSK 364 (605)
Q Consensus 324 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 364 (605)
+..+...+.......+++.+...+ ..+...++.++..|++
T Consensus 14 v~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~ 53 (140)
T smart00299 14 VELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAK 53 (140)
T ss_pred HHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHH
Confidence 333333444444444454444443 2344445555555544
No 275
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=94.47 E-value=0.077 Score=31.20 Aligned_cols=26 Identities=19% Similarity=0.312 Sum_probs=15.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHh
Q 007400 490 WNALHGVCRIHGNIDMGRKVVDQLID 515 (605)
Q Consensus 490 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 515 (605)
|..|+..|.+.|++++|+++|++++.
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45566666666666666666666443
No 276
>PRK09687 putative lyase; Provisional
Probab=94.33 E-value=4.5 Score=37.65 Aligned_cols=219 Identities=8% Similarity=-0.051 Sum_probs=85.8
Q ss_pred CCCCchHHHHHHHHHHccCChHHHHHHHhhcCCCCceeHHHHHHHHHhcCCh----HHHHHHHHHHHhCCCCCChhhHHH
Q 007400 115 PVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAV----EEGLKFYKVLRRFSISCNEFSFAG 190 (605)
Q Consensus 115 ~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~----~~a~~~~~~m~~~~~~p~~~~~~~ 190 (605)
.++|..+....+.++...|..+-...+..-+..+|...-...+.++.+.|+. .++...+..+... .|+...-..
T Consensus 33 ~d~d~~vR~~A~~aL~~~~~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR~~ 110 (280)
T PRK09687 33 DDHNSLKRISSIRVLQLRGGQDVFRLAIELCSSKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVRAS 110 (280)
T ss_pred hCCCHHHHHHHHHHHHhcCcchHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHHHH
Confidence 3444444444555555544433222222222234444444445555555542 3445555544221 234444444
Q ss_pred HHHHHhccCCh-----HHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhcCCCCcchHHHHHHHHHhcC
Q 007400 191 ILTICVKLEEL-----KLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLG 265 (605)
Q Consensus 191 ll~~~~~~~~~-----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~ 265 (605)
.+.+++..+.. ..+...+.... ..++..+-...+.++++.|+.+....+..-+..+|...-...+.+++..+
T Consensus 111 A~~aLG~~~~~~~~~~~~a~~~l~~~~---~D~~~~VR~~a~~aLg~~~~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~ 187 (280)
T PRK09687 111 AINATGHRCKKNPLYSPKIVEQSQITA---FDKSTNVRFAVAFALSVINDEAAIPLLINLLKDPNGDVRNWAAFALNSNK 187 (280)
T ss_pred HHHHHhcccccccccchHHHHHHHHHh---hCCCHHHHHHHHHHHhccCCHHHHHHHHHHhcCCCHHHHHHHHHHHhcCC
Confidence 44444333211 11112211111 12244444445555555555333333333333334433333334444332
Q ss_pred -ChHHHHH-HHhhCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhcccchHHHHHHHHHH
Q 007400 266 -DMESASK-LFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFL 343 (605)
Q Consensus 266 -~~~~A~~-~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 343 (605)
+...+.. +...+..++..+....+.++.+.|+ ..|+..+-+..+.+. .....+.++...|+. .|...+..+
T Consensus 188 ~~~~~~~~~L~~~L~D~~~~VR~~A~~aLg~~~~-~~av~~Li~~L~~~~-----~~~~a~~ALg~ig~~-~a~p~L~~l 260 (280)
T PRK09687 188 YDNPDIREAFVAMLQDKNEEIRIEAIIGLALRKD-KRVLSVLIKELKKGT-----VGDLIIEAAGELGDK-TLLPVLDTL 260 (280)
T ss_pred CCCHHHHHHHHHHhcCCChHHHHHHHHHHHccCC-hhHHHHHHHHHcCCc-----hHHHHHHHHHhcCCH-hHHHHHHHH
Confidence 1122222 2222333455555555555555555 234444434333221 122344444444443 344444444
Q ss_pred HH
Q 007400 344 IR 345 (605)
Q Consensus 344 ~~ 345 (605)
.+
T Consensus 261 ~~ 262 (280)
T PRK09687 261 LY 262 (280)
T ss_pred Hh
Confidence 43
No 277
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=94.29 E-value=0.084 Score=31.02 Aligned_cols=26 Identities=15% Similarity=0.047 Sum_probs=22.5
Q ss_pred hHHHHHHHHHhcCCchHHHHHHHHHH
Q 007400 523 THGLLSSIYSALGKGRLVEKVRQLIN 548 (605)
Q Consensus 523 ~~~~l~~~~~~~g~~~~a~~~~~~~~ 548 (605)
++..|+.+|.+.|+|++|++++++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 47789999999999999999999854
No 278
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=94.27 E-value=7.9 Score=40.25 Aligned_cols=273 Identities=9% Similarity=0.004 Sum_probs=152.5
Q ss_pred HHHHHHHhhCCCC-ChhhHHHHHHH-----HHhCCChHHHHHHHHHHHH-------CCCCCChHHHHHHHHHHhccc---
Q 007400 268 ESASKLFNEMPEK-NPVSWTTLIAG-----YTRNGLGQKALELFTRMMI-------LRIRPNQHTFSSCLCACASIV--- 331 (605)
Q Consensus 268 ~~A~~~~~~~~~~-~~~~~~~l~~~-----~~~~g~~~~a~~~~~~m~~-------~g~~p~~~~~~~ll~~~~~~~--- 331 (605)
..|..+++...+. ++..-..+... +....+++.|+.+|+.+.. .| +......+..+|.+..
T Consensus 229 ~~a~~~~~~~a~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~~ 305 (552)
T KOG1550|consen 229 SEAFKYYREAAKLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGVE 305 (552)
T ss_pred hHHHHHHHHHHhhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCCc
Confidence 4455555555432 33332222222 3344677778877777765 44 2223444455554432
Q ss_pred --chHHHHHHHHHHHHcCCCCChhHHHHHHHHHHh-cCChHHHHHHHHhcCCCCCcchHHHHHHHHHH----cCCHHHHH
Q 007400 332 --SLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSK-CGCLNDGRQVFDLTDNKENSMLWNTMISALTQ----HGYDEQAI 404 (605)
Q Consensus 332 --~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~ 404 (605)
+.+.|..++....+.| .|+....-..+..... ..+...|.+.|........+..+..+..+|.. ..+...|.
T Consensus 306 ~~d~~~A~~~~~~aA~~g-~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r~~~~A~ 384 (552)
T KOG1550|consen 306 KIDYEKALKLYTKAAELG-NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVERNLELAF 384 (552)
T ss_pred cccHHHHHHHHHHHHhcC-CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCCCHHHHH
Confidence 5667888888877777 3443333222222222 23567888888877766566655555554433 34778888
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHchHhhCCCCCHHHHHHHHHHH---Hh----cCChHHHHHH
Q 007400 405 RLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELL---AQ----AGCSDQLMNQ 477 (605)
Q Consensus 405 ~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~---~~----~g~~~~A~~~ 477 (605)
.++++..+.| .|....-...+..+.. +.++.+.-.+..+. ..+..-....-..+.... .. ..+.+.+...
T Consensus 385 ~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a-~~g~~~~q~~a~~l~~~~~~~~~~~~~~~~~~~~~~~ 461 (552)
T KOG1550|consen 385 AYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLA-ELGYEVAQSNAAYLLDQSEEDLFSRGVISTLERAFSL 461 (552)
T ss_pred HHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHH-HhhhhHHhhHHHHHHHhccccccccccccchhHHHHH
Confidence 8888888877 4443333333334444 66666555555554 323332211111111111 11 1245566677
Q ss_pred HHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhc-C--CchHHHHHHHHHHhC
Q 007400 478 LEKMPYEHDSYLWNALHGVCRI----HGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSAL-G--KGRLVEKVRQLINER 550 (605)
Q Consensus 478 ~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g--~~~~a~~~~~~~~~~ 550 (605)
+.+...+-+......+...|.. ..+++.|...|.++.+.. +.....++.++... | .+..|.+++++..+.
T Consensus 462 ~~~a~~~g~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~---~~~~~nlg~~~e~g~g~~~~~~a~~~~~~~~~~ 538 (552)
T KOG1550|consen 462 YSRAAAQGNADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG---AQALFNLGYMHEHGEGIKVLHLAKRYYDQASEE 538 (552)
T ss_pred HHHHHhccCHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh---hHHHhhhhhHHhcCcCcchhHHHHHHHHHHHhc
Confidence 7766555566666666555533 246888888888887776 67777888888763 2 257888888877654
No 279
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.25 E-value=2.7 Score=34.85 Aligned_cols=119 Identities=15% Similarity=0.191 Sum_probs=82.4
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCcHHHHHHHHHHchHhhCCCCCHHHHHHH-----HHHHHh
Q 007400 394 LTQHGYDEQAIRLFHDMVRSSVKPDKI-TLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACL-----IELLAQ 467 (605)
Q Consensus 394 ~~~~g~~~~a~~~~~~m~~~~~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l-----~~~~~~ 467 (605)
+++.+..++|+.-|..+.+.|..--+. ............|+...|...|+++-.+ .|.+.....+ ..++..
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~d---t~~P~~~rd~ARlraa~lLvD 144 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAAD---TSIPQIGRDLARLRAAYLLVD 144 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhcc---CCCcchhhHHHHHHHHHHHhc
Confidence 456788889999999988877543222 3333444567889999999999998743 2222222222 234677
Q ss_pred cCChHHHHHHHHhCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 007400 468 AGCSDQLMNQLEKMPYEHD---SYLWNALHGVCRIHGNIDMGRKVVDQLID 515 (605)
Q Consensus 468 ~g~~~~A~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 515 (605)
.|.+++....++-+..+.+ ......|+-+-.+.|++..|.+.|+++..
T Consensus 145 ~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 145 NGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred cccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 8899998888887742322 34556777788899999999999998877
No 280
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=93.97 E-value=0.12 Score=29.38 Aligned_cols=30 Identities=20% Similarity=0.244 Sum_probs=21.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 007400 490 WNALHGVCRIHGNIDMGRKVVDQLIDQNPQ 519 (605)
Q Consensus 490 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 519 (605)
+..++.++.+.|++++|.+.|+++++..|+
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 344566667777777777777777777774
No 281
>PRK11619 lytic murein transglycosylase; Provisional
Probab=93.96 E-value=9.8 Score=40.21 Aligned_cols=114 Identities=11% Similarity=0.099 Sum_probs=53.9
Q ss_pred cCCHHHHHHHHHHHHHCC-CCCCH--HHHHHHHHHHhccCcHHHHHHHHHHchHhhCCCCCHHHHHHHHHHHHhcCChHH
Q 007400 397 HGYDEQAIRLFHDMVRSS-VKPDK--ITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQ 473 (605)
Q Consensus 397 ~g~~~~a~~~~~~m~~~~-~~p~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 473 (605)
..+.+.|..++....... +.+.. .....+.......+..+++...++... ....+......-+....+.++++.
T Consensus 254 r~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~---~~~~~~~~~e~r~r~Al~~~dw~~ 330 (644)
T PRK11619 254 RQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVI---MRSQSTSLLERRVRMALGTGDRRG 330 (644)
T ss_pred HhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcc---cccCCcHHHHHHHHHHHHccCHHH
Confidence 345566666666654332 22222 133333333333322445555555443 111233334444444456667777
Q ss_pred HHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 007400 474 LMNQLEKMPY--EHDSYLWNALHGVCRIHGNIDMGRKVVDQL 513 (605)
Q Consensus 474 A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 513 (605)
+...+..|+. .....-..=++.++...|+.++|...|+++
T Consensus 331 ~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~ 372 (644)
T PRK11619 331 LNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQL 372 (644)
T ss_pred HHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 6666666641 111111122444545567777777777765
No 282
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=93.93 E-value=5.4 Score=37.16 Aligned_cols=19 Identities=11% Similarity=-0.080 Sum_probs=13.4
Q ss_pred HHHhcCCHHHHHHHHHHHH
Q 007400 496 VCRIHGNIDMGRKVVDQLI 514 (605)
Q Consensus 496 ~~~~~g~~~~A~~~~~~~~ 514 (605)
.+.+.++|+.|...|+-++
T Consensus 255 ~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 255 KHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHhhcCHHHHHHHHHHHH
Confidence 4556778888888877554
No 283
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=93.75 E-value=0.87 Score=35.84 Aligned_cols=64 Identities=11% Similarity=0.005 Sum_probs=32.4
Q ss_pred CHHHHHHHHHHHHhcC---CHHHHHHHHHHHHh-cCCCC-CchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 007400 486 DSYLWNALHGVCRIHG---NIDMGRKVVDQLID-QNPQS-SATHGLLSSIYSALGKGRLVEKVRQLINE 549 (605)
Q Consensus 486 ~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~-~~p~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 549 (605)
+..+...+++++.... +..+.+.+++.+++ ..|.. ....+.|+-.+.+.|+|+.++++.+.+.+
T Consensus 31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~ 99 (149)
T KOG3364|consen 31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLE 99 (149)
T ss_pred hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHh
Confidence 3334444555554432 34455556666654 33322 23344555566666666666666665544
No 284
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=93.47 E-value=7.9 Score=37.58 Aligned_cols=62 Identities=11% Similarity=0.117 Sum_probs=39.6
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhcCCCC------CcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 007400 351 NTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKE------NSMLWNTMISALTQHGYDEQAIRLFHDMVR 412 (605)
Q Consensus 351 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 412 (605)
...++..++..+.+.|+++.|...+..+.... .+.....-++.+...|+..+|+..++....
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34456666677777777777777766655421 334444556666777777777777777666
No 285
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=93.43 E-value=0.47 Score=43.23 Aligned_cols=61 Identities=15% Similarity=0.161 Sum_probs=39.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 007400 489 LWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINE 549 (605)
Q Consensus 489 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 549 (605)
++..++..+...|+++.+.+.+++.+..+|-+...|..+..+|.+.|+...|+..|+.+..
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 4444555666666666666666666666666666666666666666666666666666543
No 286
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.37 E-value=5.1 Score=35.12 Aligned_cols=19 Identities=11% Similarity=0.128 Sum_probs=11.0
Q ss_pred HHHcCCHHHHHHHHHHHHH
Q 007400 394 LTQHGYDEQAIRLFHDMVR 412 (605)
Q Consensus 394 ~~~~g~~~~a~~~~~~m~~ 412 (605)
|.+.+++.+|...++..++
T Consensus 83 cykk~~~~eAv~cL~~aie 101 (288)
T KOG1586|consen 83 CYKKVDPEEAVNCLEKAIE 101 (288)
T ss_pred HhhccChHHHHHHHHHHHH
Confidence 3344566666666666554
No 287
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=93.31 E-value=3.2 Score=34.18 Aligned_cols=50 Identities=14% Similarity=0.096 Sum_probs=28.1
Q ss_pred hccCcHHHHHHHHHHchHhhCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHhCC
Q 007400 430 THSGLVQEGLTYFESMTHDLGIIPN-QEHHACLIELLAQAGCSDQLMNQLEKMP 482 (605)
Q Consensus 430 ~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 482 (605)
...++.+++..++..+. -+.|. +..-..-...+.+.|++.+|..+|+++.
T Consensus 21 l~~~~~~D~e~lL~ALr---vLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~ 71 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALR---VLRPEFPELDLFDGWLHIVRGDWDDALRLLRELE 71 (160)
T ss_pred HccCChHHHHHHHHHHH---HhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 34556666666666665 44454 2222333445566677777777776653
No 288
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=93.26 E-value=0.34 Score=30.00 Aligned_cols=31 Identities=26% Similarity=0.523 Sum_probs=20.8
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 007400 386 LWNTMISALTQHGYDEQAIRLFHDMVRSSVKPD 418 (605)
Q Consensus 386 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~ 418 (605)
+|..+...|...|++++|+++|++.++ ..|+
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~--~~P~ 33 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALA--LDPD 33 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH--HCcC
Confidence 455666777777777777777777777 3454
No 289
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=93.10 E-value=4.6 Score=33.79 Aligned_cols=136 Identities=11% Similarity=0.112 Sum_probs=70.7
Q ss_pred HHHHHHHHhCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhcCCC
Q 007400 170 LKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDAR 249 (605)
Q Consensus 170 ~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 249 (605)
.++++.+.+.+++|+...+..+++.+.+.|++..-.+ ++..++-+|.......+-.+.. ....+.
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~q----llq~~Vi~DSk~lA~~LLs~~~--~~~~~~--------- 78 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQ----LLQYHVIPDSKPLACQLLSLGN--QYPPAY--------- 78 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHH----HHhhcccCCcHHHHHHHHHhHc--cChHHH---------
Confidence 3455666677787888888888888877777654433 3444544554443333322221 111111
Q ss_pred CcchHHHHHHHHHhcCChHHHHHHHhhCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhc
Q 007400 250 DVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACAS 329 (605)
Q Consensus 250 ~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 329 (605)
.-|.+++.++. ..+..++..+...|++-+|+++.+.... .+......++.+..+
T Consensus 79 ------------------Ql~lDMLkRL~----~~~~~iievLL~~g~vl~ALr~ar~~~~----~~~~~~~~fLeAA~~ 132 (167)
T PF07035_consen 79 ------------------QLGLDMLKRLG----TAYEEIIEVLLSKGQVLEALRYARQYHK----VDSVPARKFLEAAAN 132 (167)
T ss_pred ------------------HHHHHHHHHhh----hhHHHHHHHHHhCCCHHHHHHHHHHcCC----cccCCHHHHHHHHHH
Confidence 12223333332 1234455566677777777776665422 112223445566666
Q ss_pred ccchHHHHHHHHHHHHc
Q 007400 330 IVSLKHGKQVHGFLIRT 346 (605)
Q Consensus 330 ~~~~~~a~~~~~~~~~~ 346 (605)
.+|...-..+++...+.
T Consensus 133 ~~D~~lf~~V~~ff~~~ 149 (167)
T PF07035_consen 133 SNDDQLFYAVFRFFEER 149 (167)
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 66666655666555543
No 290
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.09 E-value=5 Score=34.18 Aligned_cols=90 Identities=9% Similarity=0.115 Sum_probs=58.9
Q ss_pred HHHHHhccCcHHHHHHHHHHchHhhCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHhCCCCC--CHHHHHHHHHHHH
Q 007400 425 ILNACTHSGLVQEGLTYFESMTHDLGIIPN----QEHHACLIELLAQAGCSDQLMNQLEKMPYEH--DSYLWNALHGVCR 498 (605)
Q Consensus 425 l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~l~~~~~ 498 (605)
+...+...|+++.|...++... +.+-| ..+--.|.+.....|.+++|+..++... .+ .......-+.++.
T Consensus 95 lAk~~ve~~~~d~A~aqL~~~l---~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~-~~~w~~~~~elrGDill 170 (207)
T COG2976 95 LAKAEVEANNLDKAEAQLKQAL---AQTKDENLKALAALRLARVQLQQKKADAALKTLDTIK-EESWAAIVAELRGDILL 170 (207)
T ss_pred HHHHHHhhccHHHHHHHHHHHH---ccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccc-cccHHHHHHHHhhhHHH
Confidence 3445677888888888887666 22222 1222345566777888888888887765 22 2223344566778
Q ss_pred hcCCHHHHHHHHHHHHhcCC
Q 007400 499 IHGNIDMGRKVVDQLIDQNP 518 (605)
Q Consensus 499 ~~g~~~~A~~~~~~~~~~~p 518 (605)
..|+-++|+..|+++++..+
T Consensus 171 ~kg~k~~Ar~ay~kAl~~~~ 190 (207)
T COG2976 171 AKGDKQEARAAYEKALESDA 190 (207)
T ss_pred HcCchHHHHHHHHHHHHccC
Confidence 88888888888888888764
No 291
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=92.79 E-value=0.82 Score=36.85 Aligned_cols=72 Identities=13% Similarity=0.120 Sum_probs=40.4
Q ss_pred hcCChHHHHHHHHhCC-CCCCHHHHH-HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCch
Q 007400 467 QAGCSDQLMNQLEKMP-YEHDSYLWN-ALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGR 538 (605)
Q Consensus 467 ~~g~~~~A~~~~~~~~-~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 538 (605)
..++++++..+++.+. ..|+..... .-+..+...|++++|..+++.+.+..|..+..--.++.++...|+.+
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~Dp~ 95 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGDAE 95 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCChH
Confidence 4666666666666652 233322222 22345556677777777777766666544555555566666556543
No 292
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.78 E-value=6.1 Score=34.67 Aligned_cols=121 Identities=10% Similarity=0.153 Sum_probs=63.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc-CcHHHHHHHHHHchHhh-CCCCC---HHHHHHH
Q 007400 387 WNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHS-GLVQEGLTYFESMTHDL-GIIPN---QEHHACL 461 (605)
Q Consensus 387 ~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~~-~~~p~---~~~~~~l 461 (605)
...-|..|...|++..|-.....+-+ .|... .+++.|+..|+..-.-+ |-..+ ...+-..
T Consensus 96 L~~aieIyt~~Grf~~aAk~~~~iaE---------------iyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKv 160 (288)
T KOG1586|consen 96 LEKAIEIYTDMGRFTMAAKHHIEIAE---------------IYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKV 160 (288)
T ss_pred HHHHHHHHHhhhHHHHHHhhhhhHHH---------------HHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHH
Confidence 44455667777777766554333222 22211 34455555555443111 11111 2233344
Q ss_pred HHHHHhcCChHHHHHHHHhCC---CCCC-----HHHHHHHHHHHHh-cCCHHHHHHHHHHHHhcCCCCCc
Q 007400 462 IELLAQAGCSDQLMNQLEKMP---YEHD-----SYLWNALHGVCRI-HGNIDMGRKVVDQLIDQNPQSSA 522 (605)
Q Consensus 462 ~~~~~~~g~~~~A~~~~~~~~---~~~~-----~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~p~~~~ 522 (605)
...-...+++.+|+++|++.. ...+ +.-|..-...|-- ..+.-.+...+++-.+++|.-..
T Consensus 161 A~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~d 230 (288)
T KOG1586|consen 161 AQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTD 230 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCcccc
Confidence 445567788889999988752 1122 2222222333333 37777888888888888885443
No 293
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=92.76 E-value=0.86 Score=37.45 Aligned_cols=83 Identities=19% Similarity=0.186 Sum_probs=55.8
Q ss_pred HHHHHHHHH---HHhcCChHHHHHHHHhCC-CCCCHHHHH-HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHH
Q 007400 456 EHHACLIEL---LAQAGCSDQLMNQLEKMP-YEHDSYLWN-ALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSI 530 (605)
Q Consensus 456 ~~~~~l~~~---~~~~g~~~~A~~~~~~~~-~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 530 (605)
.+...|+.. -.+.++.+++..+++.+. ..|...... .-+..+..+|++.+|+.+++.+.+..|..+..--.++.+
T Consensus 8 ~iv~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~C 87 (160)
T PF09613_consen 8 EIVGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALC 87 (160)
T ss_pred HHHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHH
Confidence 344444443 356778888888888763 345444333 335566788888888888888877777777667777777
Q ss_pred HHhcCCch
Q 007400 531 YSALGKGR 538 (605)
Q Consensus 531 ~~~~g~~~ 538 (605)
+...|+.+
T Consensus 88 L~~~~D~~ 95 (160)
T PF09613_consen 88 LYALGDPS 95 (160)
T ss_pred HHHcCChH
Confidence 77777644
No 294
>PRK10941 hypothetical protein; Provisional
Probab=92.59 E-value=1.2 Score=40.73 Aligned_cols=63 Identities=13% Similarity=0.159 Sum_probs=56.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 007400 489 LWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQ 551 (605)
Q Consensus 489 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 551 (605)
..+.+-.+|.+.++++.|+.+.+.++.+.|+++.-+...|-+|.+.|.+..|..-++...+..
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~ 245 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQC 245 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhC
Confidence 345667788999999999999999999999999999999999999999999999999887653
No 295
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.42 E-value=1.9 Score=37.92 Aligned_cols=168 Identities=8% Similarity=-0.033 Sum_probs=91.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhcCC--CCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 007400 354 VMSSLIDMYSKCGCLNDGRQVFDLTDN--KENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTH 431 (605)
Q Consensus 354 ~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 431 (605)
.|..-..+|....++++|...+.+..+ ..+...| ...+-++.|.-+.+++.. +.--...|......|..
T Consensus 33 ~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslf-------hAAKayEqaamLake~~k--lsEvvdl~eKAs~lY~E 103 (308)
T KOG1585|consen 33 LYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLF-------HAAKAYEQAAMLAKELSK--LSEVVDLYEKASELYVE 103 (308)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHH-------HHHHHHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHH
Confidence 444555566666677776665554331 1011111 112334555566666655 22222355666666777
Q ss_pred cCcHHHHHHHHHHchHhhCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhCC--------CCCCHHHHHHHHHHHHhcCCH
Q 007400 432 SGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMP--------YEHDSYLWNALHGVCRIHGNI 503 (605)
Q Consensus 432 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--------~~~~~~~~~~l~~~~~~~g~~ 503 (605)
.|.++-|-..+++.-+ ....-++++|+++|++.. .+.-...+......+.+...+
T Consensus 104 ~GspdtAAmaleKAak-----------------~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf 166 (308)
T KOG1585|consen 104 CGSPDTAAMALEKAAK-----------------ALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKF 166 (308)
T ss_pred hCCcchHHHHHHHHHH-----------------HhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHh
Confidence 7777766666665431 112233444444444320 001122334455677777888
Q ss_pred HHHHHHHHHHHhc------CCCCCchHHHHHHHHHhcCCchHHHHHHHHH
Q 007400 504 DMGRKVVDQLIDQ------NPQSSATHGLLSSIYSALGKGRLVEKVRQLI 547 (605)
Q Consensus 504 ~~A~~~~~~~~~~------~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 547 (605)
++|-..+.+-... .|.-...+...+.+|.-..++..|...++.-
T Consensus 167 ~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~ 216 (308)
T KOG1585|consen 167 TEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDC 216 (308)
T ss_pred hHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcch
Confidence 8888888777766 2322344666677777778888888888744
No 296
>PRK09687 putative lyase; Provisional
Probab=92.32 E-value=9.5 Score=35.49 Aligned_cols=134 Identities=15% Similarity=0.039 Sum_probs=59.0
Q ss_pred CcchHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC-cHHHHHHHHHHchHhhCCCCCHHHHHHH
Q 007400 383 NSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSG-LVQEGLTYFESMTHDLGIIPNQEHHACL 461 (605)
Q Consensus 383 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~~~p~~~~~~~l 461 (605)
+..+-...+.++.+.++ .+++..+-.+.+ .+|...-...+.++...+ ..+.+...+..+. ..++..+-...
T Consensus 141 ~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~---d~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L----~D~~~~VR~~A 212 (280)
T PRK09687 141 STNVRFAVAFALSVIND-EAAIPLLINLLK---DPNGDVRNWAAFALNSNKYDNPDIREAFVAML----QDKNEEIRIEA 212 (280)
T ss_pred CHHHHHHHHHHHhccCC-HHHHHHHHHHhc---CCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHh----cCCChHHHHHH
Confidence 33333344444444443 334444444443 233334444444444332 1233444444333 12344445555
Q ss_pred HHHHHhcCChHHHHHHH-HhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHH
Q 007400 462 IELLAQAGCSDQLMNQL-EKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSI 530 (605)
Q Consensus 462 ~~~~~~~g~~~~A~~~~-~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 530 (605)
+.++.+.|+. +|...+ +.+. .++ .....+.++...|.. +|+..+.++.+..| |..+.....++
T Consensus 213 ~~aLg~~~~~-~av~~Li~~L~-~~~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~~~-d~~v~~~a~~a 276 (280)
T PRK09687 213 IIGLALRKDK-RVLSVLIKELK-KGT--VGDLIIEAAGELGDK-TLLPVLDTLLYKFD-DNEIITKAIDK 276 (280)
T ss_pred HHHHHccCCh-hHHHHHHHHHc-CCc--hHHHHHHHHHhcCCH-hHHHHHHHHHhhCC-ChhHHHHHHHH
Confidence 5556665553 333333 3333 222 223344555555553 56666666666655 44444333333
No 297
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=91.98 E-value=0.37 Score=44.26 Aligned_cols=100 Identities=13% Similarity=0.067 Sum_probs=73.4
Q ss_pred HHHHHhccCcHHHHHHHHHHchHhhCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcC
Q 007400 425 ILNACTHSGLVQEGLTYFESMTHDLGIIP-NQEHHACLIELLAQAGCSDQLMNQLEKMP--YEHDSYLWNALHGVCRIHG 501 (605)
Q Consensus 425 l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g 501 (605)
-..-|.+.|.+++|+.+|...+ .+.| ++.++..-..+|.+..++..|..-.+... ...-...|..-+.+-...|
T Consensus 103 ~GN~yFKQgKy~EAIDCYs~~i---a~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg 179 (536)
T KOG4648|consen 103 RGNTYFKQGKYEEAIDCYSTAI---AVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLG 179 (536)
T ss_pred hhhhhhhccchhHHHHHhhhhh---ccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence 3567889999999999999887 5667 77788888889999999988877666543 1111234444455555668
Q ss_pred CHHHHHHHHHHHHhcCCCCCchHHHH
Q 007400 502 NIDMGRKVVDQLIDQNPQSSATHGLL 527 (605)
Q Consensus 502 ~~~~A~~~~~~~~~~~p~~~~~~~~l 527 (605)
+..+|.+-++.++++.|.+...--.+
T Consensus 180 ~~~EAKkD~E~vL~LEP~~~ELkK~~ 205 (536)
T KOG4648|consen 180 NNMEAKKDCETVLALEPKNIELKKSL 205 (536)
T ss_pred hHHHHHHhHHHHHhhCcccHHHHHHH
Confidence 89999999999999999755443333
No 298
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=91.96 E-value=0.53 Score=43.27 Aligned_cols=92 Identities=12% Similarity=0.052 Sum_probs=62.4
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHchHhhCCCCC-HHHHHHHHHHHHhc
Q 007400 391 ISALTQHGYDEQAIRLFHDMVRSSVKP-DKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPN-QEHHACLIELLAQA 468 (605)
Q Consensus 391 ~~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~ 468 (605)
..-|.+.|.+++|+..|.+... +.| |++++..-..+|.+...+..|..-...+. .+.-. ...|+.-+.+-...
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~Ai---aLd~~Y~KAYSRR~~AR~~L 178 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAI---ALDKLYVKAYSRRMQARESL 178 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHH---HhhHHHHHHHHHHHHHHHHH
Confidence 5568999999999999998888 677 88999999999999999888877666655 11111 22333333333445
Q ss_pred CChHHHHHHHHhC-CCCCCH
Q 007400 469 GCSDQLMNQLEKM-PYEHDS 487 (605)
Q Consensus 469 g~~~~A~~~~~~~-~~~~~~ 487 (605)
|...+|.+-++.. ..+|+.
T Consensus 179 g~~~EAKkD~E~vL~LEP~~ 198 (536)
T KOG4648|consen 179 GNNMEAKKDCETVLALEPKN 198 (536)
T ss_pred hhHHHHHHhHHHHHhhCccc
Confidence 5566666555553 345653
No 299
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=91.90 E-value=4.5 Score=34.53 Aligned_cols=94 Identities=9% Similarity=-0.022 Sum_probs=50.6
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHhccCcHHHHHHHHHHchHhhCCCCCH------HH
Q 007400 386 LWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDK--ITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQ------EH 457 (605)
Q Consensus 386 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~------~~ 457 (605)
.+..+...|.+.|+.+.|.+.|.++.+....|.. ..+..+++.....+++..+...+.++..-.....+. .+
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~ 117 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKV 117 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 4555566666666666666666666665444433 255556666666666666666666654211111111 12
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhC
Q 007400 458 HACLIELLAQAGCSDQLMNQLEKM 481 (605)
Q Consensus 458 ~~~l~~~~~~~g~~~~A~~~~~~~ 481 (605)
|..| .+...|++.+|-+.|-..
T Consensus 118 ~~gL--~~l~~r~f~~AA~~fl~~ 139 (177)
T PF10602_consen 118 YEGL--ANLAQRDFKEAAELFLDS 139 (177)
T ss_pred HHHH--HHHHhchHHHHHHHHHcc
Confidence 2222 234456777777776554
No 300
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=91.68 E-value=0.41 Score=39.36 Aligned_cols=129 Identities=13% Similarity=0.177 Sum_probs=72.7
Q ss_pred HHHHHhhhcCChhHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCChhHHHHHhccCCCCCchHHHHHHHHHHccCChH
Q 007400 57 FILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMK 136 (605)
Q Consensus 57 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 136 (605)
.++..+.+.+.+....++++.+...+...+.. .++.++..|++.++.++..+.++.... .-...+++.|.+.|.++
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~-~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~ 87 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPD-LHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYE 87 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHH-HHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHH-HHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHH
Confidence 35566666777777777777777666554455 777888888888777777777773332 33345666666777777
Q ss_pred HHHHHHhhcCCCCceeHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCC
Q 007400 137 HARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEE 200 (605)
Q Consensus 137 ~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~ 200 (605)
+|.-++.++...+.. +..+...++++.|.+.+... ++...|..+++.|...+.
T Consensus 88 ~a~~Ly~~~~~~~~a-----l~i~~~~~~~~~a~e~~~~~------~~~~l~~~l~~~~l~~~~ 140 (143)
T PF00637_consen 88 EAVYLYSKLGNHDEA-----LEILHKLKDYEEAIEYAKKV------DDPELWEQLLKYCLDSKP 140 (143)
T ss_dssp HHHHHHHCCTTHTTC-----SSTSSSTHCSCCCTTTGGGC------SSSHHHHHHHHHHCTSTC
T ss_pred HHHHHHHHcccHHHH-----HHHHHHHccHHHHHHHHHhc------CcHHHHHHHHHHHHhcCc
Confidence 766666665431110 11122233444444222221 346666666666655443
No 301
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=91.68 E-value=5.5 Score=31.42 Aligned_cols=59 Identities=15% Similarity=0.242 Sum_probs=32.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHch
Q 007400 387 WNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMT 446 (605)
Q Consensus 387 ~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 446 (605)
....+..+...|+-+.-.+++..+.+. -.+++.....+..+|.+.|+..++.+++.++-
T Consensus 89 vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~AC 147 (161)
T PF09205_consen 89 VDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEAC 147 (161)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHH
Confidence 344455566666666666666666542 35566666666667777777666666666665
No 302
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=91.61 E-value=7.1 Score=36.57 Aligned_cols=53 Identities=13% Similarity=0.126 Sum_probs=34.5
Q ss_pred hhHHHHHHHHHHHcCCCCChhhHHHHHHHhhh--cC----ChhHHHHHHHHHHHhCCCC
Q 007400 33 LSEAISSLDLLAQRGIRLPAETLAFILQQCAE--SK----SLKLGKRVHLHLKLTQRKT 85 (605)
Q Consensus 33 ~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~--~~----~~~~a~~~~~~~~~~~~~~ 85 (605)
+++.+++++.|.+.|+.-+..+|.+.+-.... .. ...++..+|+.|.+..+..
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fL 136 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFL 136 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccc
Confidence 34455778888888887777666664433322 22 2456888888888887653
No 303
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=91.59 E-value=17 Score=36.84 Aligned_cols=178 Identities=12% Similarity=0.072 Sum_probs=93.3
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHhhCCCC---ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChHHHHHHHHHH
Q 007400 251 VLTWTTMVSGYAKLGDMESASKLFNEMPEK---NPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCAC 327 (605)
Q Consensus 251 ~~~~~~li~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 327 (605)
..+|..-+.--...|+.+...-.|++..-| =...|-..+......|+.+.|..++....+--++-...+-..-...+
T Consensus 297 l~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~ 376 (577)
T KOG1258|consen 297 LKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFE 376 (577)
T ss_pred HHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHH
Confidence 346666677777777777777777776654 12234444444445577777777666655543322222222222233
Q ss_pred hcccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHH---HHHHhcCC-CCCcchHHHHHHH-----HHHcC
Q 007400 328 ASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGR---QVFDLTDN-KENSMLWNTMISA-----LTQHG 398 (605)
Q Consensus 328 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~---~~~~~~~~-~~~~~~~~~l~~~-----~~~~g 398 (605)
-..|++..|..+++.+.+.- +.-..+-..-+....+.|+.+.+. +++....+ +-+......+.-- +.-.+
T Consensus 377 e~~~n~~~A~~~lq~i~~e~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~i~~ 455 (577)
T KOG1258|consen 377 ESNGNFDDAKVILQRIESEY-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYKIRE 455 (577)
T ss_pred HhhccHHHHHHHHHHHHhhC-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHHHhc
Confidence 44567777777777776654 222333333445556666666666 33333221 1122222222222 22246
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 007400 399 YDEQAIRLFHDMVRSSVKPDKITLAVILNACT 430 (605)
Q Consensus 399 ~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~ 430 (605)
+.+.|..++.++.+. ++++...|..+++-+.
T Consensus 456 d~~~a~~~l~~~~~~-~~~~k~~~~~~~~~~~ 486 (577)
T KOG1258|consen 456 DADLARIILLEANDI-LPDCKVLYLELIRFEL 486 (577)
T ss_pred CHHHHHHHHHHhhhc-CCccHHHHHHHHHHHH
Confidence 666777777766664 3334445555555443
No 304
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.53 E-value=7.2 Score=32.47 Aligned_cols=88 Identities=10% Similarity=0.106 Sum_probs=46.1
Q ss_pred HHHhcCChHHHHHHHHhcCCC-CCcchHHHHH-----HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCc
Q 007400 361 MYSKCGCLNDGRQVFDLTDNK-ENSMLWNTMI-----SALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGL 434 (605)
Q Consensus 361 ~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~l~-----~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~ 434 (605)
.....|+...|...|+++... +.+....-+. -.+..+|.++......+.+-..+-+-....-..|.-+-.+.|+
T Consensus 103 ~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd 182 (221)
T COG4649 103 LLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGD 182 (221)
T ss_pred HHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccc
Confidence 345556666666666665532 1222221111 1244566666666666555443322222344455556667777
Q ss_pred HHHHHHHHHHchHh
Q 007400 435 VQEGLTYFESMTHD 448 (605)
Q Consensus 435 ~~~a~~~~~~~~~~ 448 (605)
+..|..+|..+..+
T Consensus 183 ~a~A~~~F~qia~D 196 (221)
T COG4649 183 FAKAKSWFVQIAND 196 (221)
T ss_pred hHHHHHHHHHHHcc
Confidence 77777777776633
No 305
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=91.45 E-value=1.8 Score=39.54 Aligned_cols=76 Identities=20% Similarity=0.325 Sum_probs=47.0
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHchH----hhCCCCCHHHHHH
Q 007400 386 LWNTMISALTQHGYDEQAIRLFHDMVRSSVKP-DKITLAVILNACTHSGLVQEGLTYFESMTH----DLGIIPNQEHHAC 460 (605)
Q Consensus 386 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~p~~~~~~~ 460 (605)
++..++..+...|+.+.+...++++... .| +...|..++.+|.+.|+...|+..|+.+.+ +.|+.|...+...
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~--dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIEL--DPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhc--CccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 4455566666666677777777776663 34 556677777777777777777766666543 3466666555444
Q ss_pred HHH
Q 007400 461 LIE 463 (605)
Q Consensus 461 l~~ 463 (605)
+..
T Consensus 233 y~~ 235 (280)
T COG3629 233 YEE 235 (280)
T ss_pred HHH
Confidence 433
No 306
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.33 E-value=21 Score=37.42 Aligned_cols=74 Identities=15% Similarity=0.221 Sum_probs=41.9
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHchHhhCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 007400 422 LAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHG 501 (605)
Q Consensus 422 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g 501 (605)
....+..|.+.|-+++-.-++.+|- .+..+|.-.--+.+++++|+++.++ +.|...|..|+..+...-
T Consensus 637 lekA~eiC~q~~~~~E~VYlLgrmG---------n~k~AL~lII~el~die~AIefvKe---q~D~eLWe~LI~~~ldkP 704 (846)
T KOG2066|consen 637 LEKALEICSQKNFYEELVYLLGRMG---------NAKEALKLIINELRDIEKAIEFVKE---QDDSELWEDLINYSLDKP 704 (846)
T ss_pred HHHHHHHHHhhCcHHHHHHHHHhhc---------chHHHHHHHHHHhhCHHHHHHHHHh---cCCHHHHHHHHHHhhcCc
Confidence 4445555666666666666665553 1222333333455667777776665 358888888887766544
Q ss_pred CHHHHH
Q 007400 502 NIDMGR 507 (605)
Q Consensus 502 ~~~~A~ 507 (605)
.+-.++
T Consensus 705 e~~~~l 710 (846)
T KOG2066|consen 705 EFIKAL 710 (846)
T ss_pred HHHHHH
Confidence 443333
No 307
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=91.30 E-value=3.6 Score=35.06 Aligned_cols=105 Identities=5% Similarity=0.008 Sum_probs=62.2
Q ss_pred HhccCcHHHHHHHHHHchHhhCCCCC---HHHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCH
Q 007400 429 CTHSGLVQEGLTYFESMTHDLGIIPN---QEHHACLIELLAQAGCSDQLMNQLEKM-PYEHD-SYLWNALHGVCRIHGNI 503 (605)
Q Consensus 429 ~~~~g~~~~a~~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~-~~~~~~l~~~~~~~g~~ 503 (605)
+...|++++|..-|..+.....-.+. ...|..-..++.+.+.++.|++-..+. ...|. ......-+.+|.+...+
T Consensus 105 ~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek~ 184 (271)
T KOG4234|consen 105 LFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEKY 184 (271)
T ss_pred hhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhH
Confidence 44556666666666665521111111 223444455666777777777666554 22232 23333445677788899
Q ss_pred HHHHHHHHHHHhcCCCCCchHHHHHHHHHh
Q 007400 504 DMGRKVVDQLIDQNPQSSATHGLLSSIYSA 533 (605)
Q Consensus 504 ~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 533 (605)
+.|++-|+++++.+|....+-...+.+--.
T Consensus 185 eealeDyKki~E~dPs~~ear~~i~rl~~~ 214 (271)
T KOG4234|consen 185 EEALEDYKKILESDPSRREAREAIARLPPK 214 (271)
T ss_pred HHHHHHHHHHHHhCcchHHHHHHHHhcCHH
Confidence 999999999999999766555555544333
No 308
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=91.28 E-value=0.13 Score=42.26 Aligned_cols=51 Identities=6% Similarity=0.028 Sum_probs=22.2
Q ss_pred HHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHh
Q 007400 194 ICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFD 244 (605)
Q Consensus 194 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 244 (605)
.+.+.+.+.....+++.+...+...+....+.++..|++.+..+...++++
T Consensus 16 ~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~ 66 (143)
T PF00637_consen 16 AFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK 66 (143)
T ss_dssp HCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT
T ss_pred HHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc
Confidence 333344444444444444443333344444455555555544444444444
No 309
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=91.20 E-value=0.54 Score=28.47 Aligned_cols=29 Identities=14% Similarity=0.287 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 007400 488 YLWNALHGVCRIHGNIDMGRKVVDQLIDQ 516 (605)
Q Consensus 488 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 516 (605)
.+++.++..|...|++++|+.+++++++.
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 35566667777777777777777776654
No 310
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=91.19 E-value=0.85 Score=29.54 Aligned_cols=37 Identities=19% Similarity=0.246 Sum_probs=29.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHH
Q 007400 490 WNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGL 526 (605)
Q Consensus 490 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 526 (605)
...++.++.+.|++++|++..+.+++.+|+|..+...
T Consensus 4 lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L 40 (53)
T PF14853_consen 4 LYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSL 40 (53)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHH
Confidence 3456778899999999999999999999987765543
No 311
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=90.93 E-value=8.7 Score=32.79 Aligned_cols=91 Identities=16% Similarity=0.062 Sum_probs=67.5
Q ss_pred HHHHHHHhcCChHHHHHHHHhCCCCCCHH-----HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhc
Q 007400 460 CLIELLAQAGCSDQLMNQLEKMPYEHDSY-----LWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSAL 534 (605)
Q Consensus 460 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 534 (605)
.+...+..+|++++|...++.....+... +-..|+......|.++.|+..++...+..= .+.....-++++...
T Consensus 94 ~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w-~~~~~elrGDill~k 172 (207)
T COG2976 94 ELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW-AAIVAELRGDILLAK 172 (207)
T ss_pred HHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH-HHHHHHHhhhHHHHc
Confidence 44567889999999999998653223222 233467778899999999998887654321 223355679999999
Q ss_pred CCchHHHHHHHHHHhCC
Q 007400 535 GKGRLVEKVRQLINERQ 551 (605)
Q Consensus 535 g~~~~a~~~~~~~~~~~ 551 (605)
|+.++|+..|++..+.+
T Consensus 173 g~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 173 GDKQEARAAYEKALESD 189 (207)
T ss_pred CchHHHHHHHHHHHHcc
Confidence 99999999999988764
No 312
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=90.89 E-value=6.3 Score=36.93 Aligned_cols=64 Identities=16% Similarity=0.174 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHCCCCCCHH--HHHHHHHHHhccCc--HHHHHHHHHHchHhhCCCCCHHHHHHHHHHH
Q 007400 401 EQAIRLFHDMVRSSVKPDKI--TLAVILNACTHSGL--VQEGLTYFESMTHDLGIIPNQEHHACLIELL 465 (605)
Q Consensus 401 ~~a~~~~~~m~~~~~~p~~~--~~~~l~~~~~~~g~--~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~ 465 (605)
+.++.+|+.+.+.|+..+.. ....++..+..... ..++..+++.+. +.++++....|..++-..
T Consensus 160 ~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~-~~~~kik~~~yp~lGlLa 227 (297)
T PF13170_consen 160 ERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALK-KNGVKIKYMHYPTLGLLA 227 (297)
T ss_pred HHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHH-HcCCccccccccHHHHHH
Confidence 45677788888878776432 44444433333222 447778888888 558888777766655443
No 313
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=90.87 E-value=0.34 Score=27.74 Aligned_cols=29 Identities=17% Similarity=0.023 Sum_probs=25.0
Q ss_pred chHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 007400 522 ATHGLLSSIYSALGKGRLVEKVRQLINER 550 (605)
Q Consensus 522 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 550 (605)
..+..++.++...|++++|++.+++..+.
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 46889999999999999999999998764
No 314
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=90.48 E-value=0.12 Score=47.37 Aligned_cols=97 Identities=13% Similarity=0.092 Sum_probs=74.0
Q ss_pred hcCChHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHH
Q 007400 467 QAGCSDQLMNQLEKM-PYE-HDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVR 544 (605)
Q Consensus 467 ~~g~~~~A~~~~~~~-~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~ 544 (605)
..|.++.|++.+... ..+ +....|..-..++.+.+....|++-+..+++++|+....|-.-+.+....|+|++|...+
T Consensus 126 n~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl 205 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDL 205 (377)
T ss_pred cCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHHH
Confidence 456777888777664 233 344455556777888888888999999999999998888888888888899999999999
Q ss_pred HHHHhCCCcCCCceeEEEE
Q 007400 545 QLINERQFKKEQAISWIEI 563 (605)
Q Consensus 545 ~~~~~~~~~~~~~~s~~~~ 563 (605)
....+.++....+...-++
T Consensus 206 ~~a~kld~dE~~~a~lKeV 224 (377)
T KOG1308|consen 206 ALACKLDYDEANSATLKEV 224 (377)
T ss_pred HHHHhccccHHHHHHHHHh
Confidence 9888888776655444444
No 315
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=90.03 E-value=35 Score=37.82 Aligned_cols=166 Identities=10% Similarity=0.095 Sum_probs=82.8
Q ss_pred HHhCCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhcccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHH
Q 007400 292 YTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDG 371 (605)
Q Consensus 292 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 371 (605)
-..+.++.+=+-+++++.+. +++..-|. |. ...++++.|...+..+. ...|.-.++.-.+.|.+.+|
T Consensus 861 q~SqkDPkEyLP~L~el~~m--~~~~rkF~--ID--~~L~ry~~AL~hLs~~~-------~~~~~e~~n~I~kh~Ly~~a 927 (1265)
T KOG1920|consen 861 QKSQKDPKEYLPFLNELKKM--ETLLRKFK--ID--DYLKRYEDALSHLSECG-------ETYFPECKNYIKKHGLYDEA 927 (1265)
T ss_pred HHhccChHHHHHHHHHHhhc--hhhhhhee--HH--HHHHHHHHHHHHHHHcC-------ccccHHHHHHHHhcccchhh
Confidence 34455666666666666532 22222221 00 11234444444333332 22333444445555666666
Q ss_pred HHHHHhcCCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHchHhhCC
Q 007400 372 RQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGI 451 (605)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 451 (605)
..++..-.++ -...|.+....+...+.+++|.-.|+..=+ ..-.+.+|..+|+|.+|+.+-.++. . +-
T Consensus 928 L~ly~~~~e~-~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dWr~~l~~a~ql~-~-~~ 995 (1265)
T KOG1920|consen 928 LALYKPDSEK-QKVIYEAYADHLREELMSDEAALMYERCGK---------LEKALKAYKECGDWREALSLAAQLS-E-GK 995 (1265)
T ss_pred hheeccCHHH-HHHHHHHHHHHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccHHHHHHHHHhhc-C-CH
Confidence 6555432222 223445555555666666766666654322 1223556667777777777776654 1 11
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHhCC
Q 007400 452 IPNQEHHACLIELLAQAGCSDQLMNQLEKMP 482 (605)
Q Consensus 452 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 482 (605)
.--..+-..|+.-+...++.-+|-++..+..
T Consensus 996 de~~~~a~~L~s~L~e~~kh~eAa~il~e~~ 1026 (1265)
T KOG1920|consen 996 DELVILAEELVSRLVEQRKHYEAAKILLEYL 1026 (1265)
T ss_pred HHHHHHHHHHHHHHHHcccchhHHHHHHHHh
Confidence 1112223556666777777777777776654
No 316
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=89.90 E-value=0.29 Score=28.25 Aligned_cols=20 Identities=20% Similarity=0.175 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHhcCChHHH
Q 007400 455 QEHHACLIELLAQAGCSDQL 474 (605)
Q Consensus 455 ~~~~~~l~~~~~~~g~~~~A 474 (605)
...|..|..+|...|++++|
T Consensus 13 ~~a~~nla~~~~~~g~~~~A 32 (34)
T PF13431_consen 13 AEAYNNLANLYLNQGDYEEA 32 (34)
T ss_pred HHHHHHHHHHHHHCcCHHhh
Confidence 33444444444444444443
No 317
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=89.88 E-value=0.66 Score=26.58 Aligned_cols=27 Identities=19% Similarity=0.268 Sum_probs=17.3
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 007400 386 LWNTMISALTQHGYDEQAIRLFHDMVR 412 (605)
Q Consensus 386 ~~~~l~~~~~~~g~~~~a~~~~~~m~~ 412 (605)
+|..+...|...|++++|+..|++.++
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 455666666667777777777766666
No 318
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=89.86 E-value=53 Score=39.59 Aligned_cols=62 Identities=11% Similarity=-0.003 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 007400 455 QEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQ 516 (605)
Q Consensus 455 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 516 (605)
..+|-...+....+|+++.|...+-+.....-+..+.-.+......|+...|+.++++.++.
T Consensus 1670 ge~wLqsAriaR~aG~~q~A~nall~A~e~r~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~ 1731 (2382)
T KOG0890|consen 1670 GECWLQSARIARLAGHLQRAQNALLNAKESRLPEIVLERAKLLWQTGDELNALSVLQEILSK 1731 (2382)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHhhhhcccchHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 56788888888889999999987766532224455556677788899999999999999976
No 319
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=89.79 E-value=14 Score=38.40 Aligned_cols=186 Identities=11% Similarity=0.140 Sum_probs=101.0
Q ss_pred HHHHHHHHHHHcCCCCC---hhHHHHHHHHHHhcCChHHHHHHHHhcCCCCCcc----------hHHHHHHHHHHcCCHH
Q 007400 335 HGKQVHGFLIRTNFRSN---TIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSM----------LWNTMISALTQHGYDE 401 (605)
Q Consensus 335 ~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~----------~~~~l~~~~~~~g~~~ 401 (605)
+-..++.+|.++--.|+ ..+...++-.|....+++...++.+.+..-||.. .|...+.---+-|+-+
T Consensus 181 ~l~~~L~~mR~RlDnp~VL~~d~V~nlmlSyRDvQdY~amirLVe~Lk~iP~t~~vve~~nv~f~YaFALNRRNr~GDRa 260 (1226)
T KOG4279|consen 181 QLNDYLDKMRTRLDNPDVLHPDTVSNLMLSYRDVQDYDAMIRLVEDLKRIPDTLKVVETHNVRFHYAFALNRRNRPGDRA 260 (1226)
T ss_pred HHHHHHHHHHhhcCCccccCHHHHHHHHhhhccccchHHHHHHHHHHHhCcchhhhhccCceEEEeeehhcccCCCccHH
Confidence 33455666665433333 4455666667777778888888877666544322 1222222223457778
Q ss_pred HHHHHHHHHHHCC--CCCCHHHHHH-------HHHHHhccCcHHHHHHHHHHchHhhCCCCCHHHHHHHHHHHHhcC-Ch
Q 007400 402 QAIRLFHDMVRSS--VKPDKITLAV-------ILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAG-CS 471 (605)
Q Consensus 402 ~a~~~~~~m~~~~--~~p~~~~~~~-------l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-~~ 471 (605)
+|+...-.+++.. +.||..+... +-..|...+..+.|..+|++.. .+.|+...--.+...+...| ++
T Consensus 261 kAL~~~l~lve~eg~vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaF---eveP~~~sGIN~atLL~aaG~~F 337 (1226)
T KOG4279|consen 261 KALNTVLPLVEKEGPVAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAF---EVEPLEYSGINLATLLRAAGEHF 337 (1226)
T ss_pred HHHHHHHHHHHhcCCCCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHh---ccCchhhccccHHHHHHHhhhhc
Confidence 8888777776543 5566542211 1223455667788888888876 66776443333333333333 23
Q ss_pred HHHHHHHH------hC-CCCCC----HHHHH--HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCch
Q 007400 472 DQLMNQLE------KM-PYEHD----SYLWN--ALHGVCRIHGNIDMGRKVVDQLIDQNPQSSAT 523 (605)
Q Consensus 472 ~~A~~~~~------~~-~~~~~----~~~~~--~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 523 (605)
+...++-. .+ ..+.. ...|. ....+-.-++++.+|....+.|.++.|.....
T Consensus 338 ens~Elq~IgmkLn~LlgrKG~leklq~YWdV~~y~~asVLAnd~~kaiqAae~mfKLk~P~WYL 402 (1226)
T KOG4279|consen 338 ENSLELQQIGMKLNSLLGRKGALEKLQEYWDVATYFEASVLANDYQKAIQAAEMMFKLKPPVWYL 402 (1226)
T ss_pred cchHHHHHHHHHHHHHhhccchHHHHHHHHhHHHhhhhhhhccCHHHHHHHHHHHhccCCceehH
Confidence 32222110 00 11111 11121 13445556789999999999999998855443
No 320
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=89.78 E-value=17 Score=33.87 Aligned_cols=23 Identities=4% Similarity=-0.340 Sum_probs=17.9
Q ss_pred HHHHHHHhcCCchHHHHHHHHHH
Q 007400 526 LLSSIYSALGKGRLVEKVRQLIN 548 (605)
Q Consensus 526 ~l~~~~~~~g~~~~a~~~~~~~~ 548 (605)
.-+..+.+.++|++|.+.|+...
T Consensus 251 ~~~~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 251 NKGKKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHHHHHhhcCHHHHHHHHHHHH
Confidence 34666788999999999988554
No 321
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=89.77 E-value=37 Score=37.67 Aligned_cols=79 Identities=6% Similarity=-0.002 Sum_probs=40.4
Q ss_pred HHHHHhcCChHHHHHHHHhCCCCCCHHH--HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchH
Q 007400 462 IELLAQAGCSDQLMNQLEKMPYEHDSYL--WNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRL 539 (605)
Q Consensus 462 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 539 (605)
+.+|..+|++.+|+.+..++....|... -..|..-+..+++.-+|-++.....+. ...-...|++...|++
T Consensus 972 l~a~~~~~dWr~~l~~a~ql~~~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd-------~~~av~ll~ka~~~~e 1044 (1265)
T KOG1920|consen 972 LKAYKECGDWREALSLAAQLSEGKDELVILAEELVSRLVEQRKHYEAAKILLEYLSD-------PEEAVALLCKAKEWEE 1044 (1265)
T ss_pred HHHHHHhccHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcC-------HHHHHHHHhhHhHHHH
Confidence 3445555555555555555542223222 134555666666666665555544332 1123345555666777
Q ss_pred HHHHHHHH
Q 007400 540 VEKVRQLI 547 (605)
Q Consensus 540 a~~~~~~~ 547 (605)
|.++....
T Consensus 1045 Alrva~~~ 1052 (1265)
T KOG1920|consen 1045 ALRVASKA 1052 (1265)
T ss_pred HHHHHHhc
Confidence 77665543
No 322
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=89.74 E-value=2.5 Score=36.06 Aligned_cols=91 Identities=8% Similarity=-0.049 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHhCCC---C--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCCCCchH----
Q 007400 456 EHHACLIELLAQAGCSDQLMNQLEKMPY---E--HDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQ--NPQSSATH---- 524 (605)
Q Consensus 456 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~---- 524 (605)
..+..++..|.+.|+.+.|.+.+.++.. . .-...+..++......+++..+...+.++... .+.++...
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 3555666677777777777777766531 1 12334555666666777777777777777665 22222211
Q ss_pred HHHHHHHHhcCCchHHHHHHHH
Q 007400 525 GLLSSIYSALGKGRLVEKVRQL 546 (605)
Q Consensus 525 ~~l~~~~~~~g~~~~a~~~~~~ 546 (605)
..-+-.+...|++.+|.+.|-.
T Consensus 117 ~~~gL~~l~~r~f~~AA~~fl~ 138 (177)
T PF10602_consen 117 VYEGLANLAQRDFKEAAELFLD 138 (177)
T ss_pred HHHHHHHHHhchHHHHHHHHHc
Confidence 1223344456777777766643
No 323
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=89.47 E-value=6 Score=34.97 Aligned_cols=61 Identities=7% Similarity=-0.130 Sum_probs=51.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 007400 490 WNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINER 550 (605)
Q Consensus 490 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 550 (605)
+..+..++...|++-++++....++...|.|..+|+.-+.+....=+.++|..-|..+++.
T Consensus 233 llNy~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~l 293 (329)
T KOG0545|consen 233 LLNYCQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLEL 293 (329)
T ss_pred HHhHHHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhc
Confidence 3344556677899999999999999999999999999999998888888898888888764
No 324
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=89.21 E-value=0.53 Score=25.11 Aligned_cols=23 Identities=17% Similarity=0.122 Sum_probs=15.8
Q ss_pred hHHHHHHHHHhcCCchHHHHHHH
Q 007400 523 THGLLSSIYSALGKGRLVEKVRQ 545 (605)
Q Consensus 523 ~~~~l~~~~~~~g~~~~a~~~~~ 545 (605)
....++.++...|++++|..+++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 45567777777777777776664
No 325
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=89.20 E-value=0.76 Score=25.32 Aligned_cols=30 Identities=13% Similarity=0.197 Sum_probs=18.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 007400 489 LWNALHGVCRIHGNIDMGRKVVDQLIDQNP 518 (605)
Q Consensus 489 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 518 (605)
.|..++..+...|+++.|...++++++..|
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 344555666666666666666666666655
No 326
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.90 E-value=34 Score=36.04 Aligned_cols=141 Identities=13% Similarity=0.196 Sum_probs=74.8
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHhhcCCCCcchHHHHHHHHHhcCChHHHHHHHhhCCC-CChhhHHHHHHHHHhCCChH
Q 007400 221 VISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPE-KNPVSWTTLIAGYTRNGLGQ 299 (605)
Q Consensus 221 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~ 299 (605)
.+....+..+...|++++|-...-.|...+..-|...+..+...++......++-.-.. -++..|..++..+.. .+..
T Consensus 393 kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~~Ia~~lPt~~~rL~p~vYemvLve~L~-~~~~ 471 (846)
T KOG2066|consen 393 KVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLTDIAPYLPTGPPRLKPLVYEMVLVEFLA-SDVK 471 (846)
T ss_pred HHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccchhhccCCCCCcccCchHHHHHHHHHHH-HHHH
Confidence 34455666666777777777777777666666666666666666655544444433332 255667777776666 2222
Q ss_pred HHHHHHHHHHHCCCCCChHHHHHHHHHHhcccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcC
Q 007400 300 KALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTD 379 (605)
Q Consensus 300 ~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 379 (605)
-|.+..+ ..+...|..+.-.-+.. .+..+. ..+...-..|+..|...++++.|..++-...
T Consensus 472 ----~F~e~i~---~Wp~~Lys~l~iisa~~----------~q~~q~--Se~~~L~e~La~LYl~d~~Y~~Al~~ylklk 532 (846)
T KOG2066|consen 472 ----GFLELIK---EWPGHLYSVLTIISATE----------PQIKQN--SESTALLEVLAHLYLYDNKYEKALPIYLKLQ 532 (846)
T ss_pred ----HHHHHHH---hCChhhhhhhHHHhhcc----------hHHHhh--ccchhHHHHHHHHHHHccChHHHHHHHHhcc
Confidence 2222222 12223332222111111 111111 1122233448888888899999988887766
Q ss_pred CC
Q 007400 380 NK 381 (605)
Q Consensus 380 ~~ 381 (605)
.+
T Consensus 533 ~~ 534 (846)
T KOG2066|consen 533 DK 534 (846)
T ss_pred Ch
Confidence 54
No 327
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=88.85 E-value=0.84 Score=26.09 Aligned_cols=28 Identities=21% Similarity=0.074 Sum_probs=25.4
Q ss_pred chHHHHHHHHHhcCCchHHHHHHHHHHh
Q 007400 522 ATHGLLSSIYSALGKGRLVEKVRQLINE 549 (605)
Q Consensus 522 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 549 (605)
.+|..++.+|...|++++|...|++..+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4688999999999999999999998865
No 328
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=88.11 E-value=36 Score=36.01 Aligned_cols=69 Identities=16% Similarity=0.045 Sum_probs=39.5
Q ss_pred CchHHHHHHHHHHccCChHHHHHHHhhcC---CCCceeHHHHHHHHHhcCC-------hHHHHHHHHHHHhCCCCCChh
Q 007400 118 NLFSYNNMLSGYANLGMMKHARNLFDNMA---ERDVVSWNTMIIGYAKSGA-------VEEGLKFYKVLRRFSISCNEF 186 (605)
Q Consensus 118 ~~~~~~~li~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~-------~~~a~~~~~~m~~~~~~p~~~ 186 (605)
+...-..+|-.|.+.|++++|.++..... ......+-..+..|..+.+ -++...-|++..+.....|+.
T Consensus 110 ~~~p~Wa~Iyy~LR~G~~~~A~~~~~~~~~~~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~~~~~Dpy 188 (613)
T PF04097_consen 110 NGDPIWALIYYCLRCGDYDEALEVANENRNQFQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRNSTDGDPY 188 (613)
T ss_dssp TTEEHHHHHHHHHTTT-HHHHHHHHHHTGGGS-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT-TTS-HH
T ss_pred CCCccHHHHHHHHhcCCHHHHHHHHHHhhhhhcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcCCCCCChH
Confidence 33445577888899999999999984433 2344556666777765432 235555566655543322443
No 329
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=87.83 E-value=40 Score=35.70 Aligned_cols=157 Identities=10% Similarity=0.059 Sum_probs=85.6
Q ss_pred hHHHHHHHHH-hcCChhHHHHHhccCC----CCCc-----hHHHHHHHHHHccCChHHHHHHHhhcCC---C-Cc----e
Q 007400 90 LSNHLISMYF-KCGSDVDARKVFDKIP----VKNL-----FSYNNMLSGYANLGMMKHARNLFDNMAE---R-DV----V 151 (605)
Q Consensus 90 ~~~~l~~~~~-~~g~~~~a~~~~~~~~----~~~~-----~~~~~li~~~~~~~~~~~A~~~~~~~~~---~-~~----~ 151 (605)
++-.+...+. ...+++.|+..+++.. +++. .....++..+.+.+... |...+++..+ . .. .
T Consensus 61 ~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~ 139 (608)
T PF10345_consen 61 VRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYY 139 (608)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHH
Confidence 3444555554 5677888887777653 1111 12234456666665554 7777766542 1 11 1
Q ss_pred eHHHH-HHHHHhcCChHHHHHHHHHHHhCC---CCCChhhHHHHHHHHh--ccCChHHHHHHHHHHHHhCC---------
Q 007400 152 SWNTM-IIGYAKSGAVEEGLKFYKVLRRFS---ISCNEFSFAGILTICV--KLEELKLTRQVHGQVLVTGF--------- 216 (605)
Q Consensus 152 ~~~~l-i~~~~~~~~~~~a~~~~~~m~~~~---~~p~~~~~~~ll~~~~--~~~~~~~a~~~~~~~~~~~~--------- 216 (605)
.+..+ +..+...+++..|.+.++.....- ..|-...+..++.+.. +.+..+.+.+.++.+.....
T Consensus 140 ~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~ 219 (608)
T PF10345_consen 140 AFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVH 219 (608)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCC
Confidence 22222 222223478888999988876522 2333444445555443 45556667776666644322
Q ss_pred CCChhHHHHHHHH--HHhcCChHHHHHHHhhcC
Q 007400 217 LSNVVISSSIVDA--YAKCGELSDARRLFDETD 247 (605)
Q Consensus 217 ~~~~~~~~~l~~~--~~~~g~~~~a~~~~~~~~ 247 (605)
.|...+|..+++. +...|+++.+...++++.
T Consensus 220 ~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq 252 (608)
T PF10345_consen 220 IPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQ 252 (608)
T ss_pred cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 2345566666665 445777777777766654
No 330
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=87.76 E-value=0.68 Score=26.16 Aligned_cols=28 Identities=21% Similarity=0.080 Sum_probs=25.0
Q ss_pred hHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 007400 523 THGLLSSIYSALGKGRLVEKVRQLINER 550 (605)
Q Consensus 523 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 550 (605)
++..++.++.+.|++++|.++|+++.+.
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 4678999999999999999999998764
No 331
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=87.34 E-value=10 Score=28.41 Aligned_cols=60 Identities=13% Similarity=0.243 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHchHhhCCCCCHHHHHHHHH
Q 007400 402 QAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIE 463 (605)
Q Consensus 402 ~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 463 (605)
+..+-+..+....+.|++......+.+|.+.+++..|.++++-+..+.+.. ...|..+++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~--~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNK--KEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT---TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCh--HHHHHHHHH
Confidence 456667777777788999999999999999999999999999887554433 336665553
No 332
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=87.30 E-value=19 Score=31.37 Aligned_cols=177 Identities=13% Similarity=0.073 Sum_probs=93.3
Q ss_pred HHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCCCCCcchHHHHHH--HHHHcCCHHHHHHHHHHHH
Q 007400 334 KHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMIS--ALTQHGYDEQAIRLFHDMV 411 (605)
Q Consensus 334 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~--~~~~~g~~~~a~~~~~~m~ 411 (605)
.-|+--|.+..... |.-+.+||-|.-.+...|+++.|.+.|+...+-....-|..+=+ ++.--|++.-|.+-+...-
T Consensus 82 ~LAR~DftQaLai~-P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fY 160 (297)
T COG4785 82 ALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFY 160 (297)
T ss_pred HHHhhhhhhhhhcC-CCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHHHHHH
Confidence 33333344443332 33456788888888888999999999987665411222322222 2334678888887777666
Q ss_pred HCCCCCCHHHHHHHHHHHhccCcHHHHHHHH-HHchHhhCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhCCC------C
Q 007400 412 RSSVKPDKITLAVILNACTHSGLVQEGLTYF-ESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPY------E 484 (605)
Q Consensus 412 ~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~-~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~------~ 484 (605)
+. .|+...-...+..-...-++.+|..-+ ++.. +..-+..-+ .++..|...=..+.+.+-...-.. +
T Consensus 161 Q~--D~~DPfR~LWLYl~E~k~dP~~A~tnL~qR~~---~~d~e~WG~-~iV~~yLgkiS~e~l~~~~~a~a~~n~~~Ae 234 (297)
T COG4785 161 QD--DPNDPFRSLWLYLNEQKLDPKQAKTNLKQRAE---KSDKEQWGW-NIVEFYLGKISEETLMERLKADATDNTSLAE 234 (297)
T ss_pred hc--CCCChHHHHHHHHHHhhCCHHHHHHHHHHHHH---hccHhhhhH-HHHHHHHhhccHHHHHHHHHhhccchHHHHH
Confidence 64 333221111111222334556665443 3333 222222222 223333222223333333322210 1
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 007400 485 HDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQN 517 (605)
Q Consensus 485 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 517 (605)
.-..+|..++.-+...|+.++|..+|+-++..+
T Consensus 235 ~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiann 267 (297)
T COG4785 235 HLTETYFYLGKYYLSLGDLDEATALFKLAVANN 267 (297)
T ss_pred HHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence 123567778888889999999999999888764
No 333
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.05 E-value=5.4 Score=36.65 Aligned_cols=102 Identities=12% Similarity=0.180 Sum_probs=70.3
Q ss_pred HcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCCCCCcc-----hHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH
Q 007400 345 RTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSM-----LWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDK 419 (605)
Q Consensus 345 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-----~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~ 419 (605)
..|.+.+..+...++..-....+++.+...+-.+...|+.. +-...++. +..=++++++.++..=+.-|+-||.
T Consensus 57 ~~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irl-llky~pq~~i~~l~npIqYGiF~dq 135 (418)
T KOG4570|consen 57 ERGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRL-LLKYDPQKAIYTLVNPIQYGIFPDQ 135 (418)
T ss_pred hcCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHH-HHccChHHHHHHHhCcchhccccch
Confidence 34555566666666666666777888887776665443221 11122222 2334677888888888888999999
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHchH
Q 007400 420 ITLAVILNACTHSGLVQEGLTYFESMTH 447 (605)
Q Consensus 420 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 447 (605)
.+++.+++.+.+.+++.+|.++...|..
T Consensus 136 f~~c~l~D~flk~~n~~~aa~vvt~~~~ 163 (418)
T KOG4570|consen 136 FTFCLLMDSFLKKENYKDAASVVTEVMM 163 (418)
T ss_pred hhHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 9999999999999999888888777663
No 334
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=86.93 E-value=2.4 Score=35.58 Aligned_cols=16 Identities=13% Similarity=0.486 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHhcCC
Q 007400 503 IDMGRKVVDQLIDQNP 518 (605)
Q Consensus 503 ~~~A~~~~~~~~~~~p 518 (605)
+++|...|+++.+.+|
T Consensus 96 F~kA~~~FqkAv~~~P 111 (186)
T PF06552_consen 96 FEKATEYFQKAVDEDP 111 (186)
T ss_dssp HHHHHHHHHHHHHH-T
T ss_pred HHHHHHHHHHHHhcCC
Confidence 3445555555555555
No 335
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=86.73 E-value=1.3 Score=27.37 Aligned_cols=27 Identities=15% Similarity=0.085 Sum_probs=23.3
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHHhCC
Q 007400 525 GLLSSIYSALGKGRLVEKVRQLINERQ 551 (605)
Q Consensus 525 ~~l~~~~~~~g~~~~a~~~~~~~~~~~ 551 (605)
..|+.+|...|+.+.|.++++++.+.|
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHHcC
Confidence 468999999999999999999887643
No 336
>PRK12798 chemotaxis protein; Reviewed
Probab=86.70 E-value=33 Score=33.42 Aligned_cols=151 Identities=13% Similarity=0.159 Sum_probs=80.0
Q ss_pred cCChHHHHHHHHhcCCC---CCcchHHHHHHH-HHHcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHhccCcHH
Q 007400 365 CGCLNDGRQVFDLTDNK---ENSMLWNTMISA-LTQHGYDEQAIRLFHDMVRSSVKPDK----ITLAVILNACTHSGLVQ 436 (605)
Q Consensus 365 ~g~~~~A~~~~~~~~~~---~~~~~~~~l~~~-~~~~g~~~~a~~~~~~m~~~~~~p~~----~~~~~l~~~~~~~g~~~ 436 (605)
.|+.+++.+.+..+... +....+-.|+.+ .....+...|+++|+...- ..|-. .....-+......|+.+
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRL--laPGTLvEEAALRRsi~la~~~g~~~ 202 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARL--LAPGTLVEEAALRRSLFIAAQLGDAD 202 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHH--hCCchHHHHHHHHHhhHHHHhcCcHH
Confidence 46666666666655532 233345555544 3345566677777766544 33432 23333444555667766
Q ss_pred HHHHHHHHchHhhCCCCCHHHHHH-HHHHHHh---cCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 007400 437 EGLTYFESMTHDLGIIPNQEHHAC-LIELLAQ---AGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQ 512 (605)
Q Consensus 437 ~a~~~~~~~~~~~~~~p~~~~~~~-l~~~~~~---~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 512 (605)
++..+-.+....+...|=..-|.. +...+.+ ....+....++..|.-.--..+|..+...-...|+.+.|...-++
T Consensus 203 rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~ 282 (421)
T PRK12798 203 KFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDARLVEILSFMDPERQRELYLRIARAALIDGKTELARFASER 282 (421)
T ss_pred HHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHHHHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 666555555544444443332222 2222222 223444555555555222345666667777777777777777777
Q ss_pred HHhcC
Q 007400 513 LIDQN 517 (605)
Q Consensus 513 ~~~~~ 517 (605)
+..+.
T Consensus 283 A~~L~ 287 (421)
T PRK12798 283 ALKLA 287 (421)
T ss_pred HHHhc
Confidence 77764
No 337
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=86.64 E-value=11 Score=28.04 Aligned_cols=60 Identities=28% Similarity=0.349 Sum_probs=41.8
Q ss_pred HHHHhcCChHHHHHHHhhCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChHHHH
Q 007400 259 SGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFS 321 (605)
Q Consensus 259 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~ 321 (605)
..+.+.|++++|..+.+.+..||...|-+|.. .+.|..+++...+.+|...| .|....|.
T Consensus 47 sSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg-~p~lq~Fa 106 (115)
T TIGR02508 47 SSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLAASG-DPRLQTFV 106 (115)
T ss_pred HHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHHhCC-CHHHHHHH
Confidence 44666777777778888887788888776654 46677777777777777766 45544443
No 338
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=86.57 E-value=3 Score=36.08 Aligned_cols=63 Identities=11% Similarity=0.054 Sum_probs=47.3
Q ss_pred HHHHHHHHhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 007400 459 ACLIELLAQAGCSDQLMNQLEKM-PY-EHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSS 521 (605)
Q Consensus 459 ~~l~~~~~~~g~~~~A~~~~~~~-~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 521 (605)
...+..+.+.+.+++|+...+.- .. +.|......+...++..|++++|..-++-+-++.|+..
T Consensus 5 ~~t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t 69 (273)
T COG4455 5 RDTISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDT 69 (273)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccc
Confidence 34455677788888888877653 32 34566777788888999999999999998888888544
No 339
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=86.34 E-value=1.3 Score=26.68 Aligned_cols=29 Identities=17% Similarity=0.095 Sum_probs=24.6
Q ss_pred chHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 007400 522 ATHGLLSSIYSALGKGRLVEKVRQLINER 550 (605)
Q Consensus 522 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 550 (605)
.++..|+.+|...|++++|..++++..+.
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 46789999999999999999999988653
No 340
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=85.79 E-value=13 Score=36.32 Aligned_cols=122 Identities=13% Similarity=0.114 Sum_probs=55.4
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHchHhhCCCCCHHHHHHHHHHHHhcCChHHH
Q 007400 395 TQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQL 474 (605)
Q Consensus 395 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 474 (605)
...|+.-.|-+-+...++. .+-++.........+...|+++.+.+.+..... -+.....+..++++...+.|++++|
T Consensus 300 ~~~gd~~aas~~~~~~lr~-~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~--~~~s~~~~~~~~~r~~~~l~r~~~a 376 (831)
T PRK15180 300 LADGDIIAASQQLFAALRN-QQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEK--IIGTTDSTLRCRLRSLHGLARWREA 376 (831)
T ss_pred hhccCHHHHHHHHHHHHHh-CCCCchhhHHHHHHHHHhhhHHHHHHHhhchhh--hhcCCchHHHHHHHhhhchhhHHHH
Confidence 3445555554433333332 111222222223334555666666665555441 2223344555555555566666666
Q ss_pred HHHHHhCC-C-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 007400 475 MNQLEKMP-Y-EHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQ 519 (605)
Q Consensus 475 ~~~~~~~~-~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 519 (605)
...-+.|. . -.++.+....+......|-++++...+++.+.++|.
T Consensus 377 ~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~ 423 (831)
T PRK15180 377 LSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPE 423 (831)
T ss_pred HHHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCCh
Confidence 65555442 0 112333333333334445555666666665555443
No 341
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=85.69 E-value=7.3 Score=28.80 Aligned_cols=60 Identities=13% Similarity=0.247 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHchHhhCCCCCHHHHHHHH
Q 007400 401 EQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLI 462 (605)
Q Consensus 401 ~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~ 462 (605)
-++.+-+..+....+.|++......+++|.+.+++..|.++++-+..+.+. +...|..++
T Consensus 24 we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~--~~~~y~~~l 83 (103)
T cd00923 24 WELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGA--HKEIYPYIL 83 (103)
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccC--chhhHHHHH
Confidence 355666777777778899999999999999999999999999887644332 344555554
No 342
>PRK11619 lytic murein transglycosylase; Provisional
Probab=85.41 E-value=55 Score=34.81 Aligned_cols=460 Identities=8% Similarity=-0.034 Sum_probs=237.1
Q ss_pred hhhHHHHHHHhhhcCChhHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCChhHHHHHhccCCC-CCc-hHHHHHHHHH
Q 007400 52 AETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPV-KNL-FSYNNMLSGY 129 (605)
Q Consensus 52 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~-~~~~~li~~~ 129 (605)
...|.....++ +.|++..+.++...+. ..+..+-. .|..+...+. ...+++....+++... |-. ..-...+..+
T Consensus 34 r~~f~~A~~a~-~~g~~~~~~~~~~~l~-d~pL~~yl-~y~~L~~~l~-~~~~~ev~~Fl~~~~~~P~~~~Lr~~~l~~L 109 (644)
T PRK11619 34 RQRYQQIKQAW-DNRQMDVVEQLMPTLK-DYPLYPYL-EYRQLTQDLM-NQPAVQVTNFIRANPTLPPARSLQSRFVNEL 109 (644)
T ss_pred HHHHHHHHHHH-HCCCHHHHHHHHHhcc-CCCcHhHH-HHHHHHhccc-cCCHHHHHHHHHHCCCCchHHHHHHHHHHHH
Confidence 44555555554 6677888777766542 11111111 3333322211 2356677777776664 322 2233345556
Q ss_pred HccCChHHHHHHHhhcCCCCceeHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCChHHHHHHHH
Q 007400 130 ANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHG 209 (605)
Q Consensus 130 ~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 209 (605)
.+.+++......+.. ...+...-.....+....|+.++|.+..+.+-..|- ..+..++ .+|+
T Consensus 110 a~~~~w~~~~~~~~~-~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~-~~p~~cd----------------~l~~ 171 (644)
T PRK11619 110 ARREDWRGLLAFSPE-KPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTGK-SLPNACD----------------KLFS 171 (644)
T ss_pred HHccCHHHHHHhcCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCC-CCChHHH----------------HHHH
Confidence 677888877773322 223444445566777778887777666666544332 1233334 4444
Q ss_pred HHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhcCCCCcchHHHHHHHHHhcCChHHHHHHHhhCCCCChhhHHHHH
Q 007400 210 QVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLI 289 (605)
Q Consensus 210 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~ 289 (605)
...+.|.-.+...+.- +......|+...|..+...+..........++..+.. ...+...+.... ++...-..++
T Consensus 172 ~~~~~g~lt~~d~w~R-~~~al~~~~~~lA~~l~~~l~~~~~~~a~a~~al~~~---p~~~~~~~~~~~-~~~~~~~~~~ 246 (644)
T PRK11619 172 VWQQSGKQDPLAYLER-IRLAMKAGNTGLVTYLAKQLPADYQTIASALIKLQND---PNTVETFARTTG-PTDFTRQMAA 246 (644)
T ss_pred HHHHcCCCCHHHHHHH-HHHHHHCCCHHHHHHHHHhcChhHHHHHHHHHHHHHC---HHHHHHHhhccC-CChhhHHHHH
Confidence 4444444333344443 4455567888888877777732222223333333332 333333333321 2221111112
Q ss_pred HH--HHhCCChHHHHHHHHHHHHCC-CCCChH--HHHHHHHHHhcccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHh
Q 007400 290 AG--YTRNGLGQKALELFTRMMILR-IRPNQH--TFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSK 364 (605)
Q Consensus 290 ~~--~~~~g~~~~a~~~~~~m~~~g-~~p~~~--~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 364 (605)
.+ -....+.+.|..++....... ..+... ....+.......+..+.+...+....... .+......-+.....
T Consensus 247 ~~l~Rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~--~~~~~~e~r~r~Al~ 324 (644)
T PRK11619 247 VAFASVARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS--QSTSLLERRVRMALG 324 (644)
T ss_pred HHHHHHHHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc--CCcHHHHHHHHHHHH
Confidence 12 223456788999998875433 222222 22223222223222445555555433222 344555666666678
Q ss_pred cCChHHHHHHHHhcCCC--CCcchHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcH---HH--
Q 007400 365 CGCLNDGRQVFDLTDNK--ENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLV---QE-- 437 (605)
Q Consensus 365 ~g~~~~A~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~---~~-- 437 (605)
.++++.+...+..|... ....-..=+.+++...|+.++|...|+++.. ..+ .|..+... +.|.. ..
T Consensus 325 ~~dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~---~~~--fYG~LAa~--~Lg~~~~~~~~~ 397 (644)
T PRK11619 325 TGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ---QRG--FYPMVAAQ--RLGEEYPLKIDK 397 (644)
T ss_pred ccCHHHHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc---CCC--cHHHHHHH--HcCCCCCCCCCC
Confidence 89999998888888642 1233444567777778999999999998743 222 22222221 11211 00
Q ss_pred HHHHHHHchHhhCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 007400 438 GLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQN 517 (605)
Q Consensus 438 a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 517 (605)
.-..-..+ ...| -..-+..+...|+...|...+..+....+......++......|.++.++....+....+
T Consensus 398 ~~~~~~~~----~~~~----~~~ra~~L~~~g~~~~a~~ew~~~~~~~~~~~~~~la~~A~~~g~~~~ai~~~~~~~~~~ 469 (644)
T PRK11619 398 APKPDSAL----TQGP----EMARVRELMYWNMDNTARSEWANLVASRSKTEQAQLARYAFNQQWWDLSVQATIAGKLWD 469 (644)
T ss_pred CCchhhhh----ccCh----HHHHHHHHHHCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCHHHHHHHHhhchhHH
Confidence 00000000 0011 112344566788888888888766434566666667777778888888887766543210
Q ss_pred ---CCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCCCcCC
Q 007400 518 ---PQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKE 555 (605)
Q Consensus 518 ---p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 555 (605)
-.-+..|......+.+.-..+.+.-.--.-.|.++.+.
T Consensus 470 ~~~~rfp~~~~~~~~~~a~~~~v~~~lv~ai~rqES~f~p~ 510 (644)
T PRK11619 470 HLEERFPLAWNDEFRRYTSGKGIPQSYAMAIARQESAWNPK 510 (644)
T ss_pred HHHHhCCcchHHHHHHHHHHcCCCHHHHHHHHHHhcCCCCC
Confidence 01123455566666655566666543333346666554
No 343
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=85.39 E-value=33 Score=32.24 Aligned_cols=114 Identities=12% Similarity=0.005 Sum_probs=61.8
Q ss_pred cHHHHHHHHHHchHhhCCCCCHHHHHHHHHHHHhc----C---ChHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCC
Q 007400 434 LVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQA----G---CSDQLMNQLEKMPYEHDSYLWNALHGVCRI----HGN 502 (605)
Q Consensus 434 ~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~----g---~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~g~ 502 (605)
+..+|..+|+++. +.|..+.......+...|..- + +...|...+.++...-+......++..|.. ..+
T Consensus 128 d~~~A~~~~~~Aa-~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~~~~a~~~lg~~y~~G~Gv~~d 206 (292)
T COG0790 128 DLVKALKYYEKAA-KLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELGNPDAQLLLGRMYEKGLGVPRD 206 (292)
T ss_pred CHHHHHHHHHHHH-HcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCcC
Confidence 5566666666665 334433222233333333332 1 223566666665323345555555544432 347
Q ss_pred HHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcC---------------CchHHHHHHHHHHhCC
Q 007400 503 IDMGRKVVDQLIDQNPQSSATHGLLSSIYSALG---------------KGRLVEKVRQLINERQ 551 (605)
Q Consensus 503 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g---------------~~~~a~~~~~~~~~~~ 551 (605)
.++|...|+++-+... ......++ ++...| +...|...+......+
T Consensus 207 ~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 267 (292)
T COG0790 207 LKKAFRWYKKAAEQGD--GAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELG 267 (292)
T ss_pred HHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcC
Confidence 8888888888888765 45555566 555555 6666677666665544
No 344
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=85.36 E-value=2.7 Score=31.01 Aligned_cols=40 Identities=13% Similarity=0.062 Sum_probs=19.3
Q ss_pred HHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 007400 510 VDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINE 549 (605)
Q Consensus 510 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 549 (605)
+++.++.+|+|......++..+...|++++|.+.+-.+.+
T Consensus 11 l~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~ 50 (90)
T PF14561_consen 11 LEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVR 50 (90)
T ss_dssp HHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHC
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 4444444555555555555555555555555555444433
No 345
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=85.32 E-value=1.8 Score=24.15 Aligned_cols=31 Identities=19% Similarity=0.350 Sum_probs=25.5
Q ss_pred CCHHHHHHHHHHHHhcCCCCCchHHHHHHHH
Q 007400 501 GNIDMGRKVVDQLIDQNPQSSATHGLLSSIY 531 (605)
Q Consensus 501 g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 531 (605)
|+.+.+..+|++++...|.+...|..++...
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~~e 31 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAEFE 31 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHHHH
Confidence 5678899999999999998888888776543
No 346
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.05 E-value=25 Score=35.68 Aligned_cols=152 Identities=17% Similarity=0.108 Sum_probs=85.0
Q ss_pred HHhcCChHHHHHHHhhCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhcccchHHHHHHH
Q 007400 261 YAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVH 340 (605)
Q Consensus 261 ~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 340 (605)
..-.|+++.|..++..+.++ ..+.++..+.++|-.++|+++- +|...- .....+.|+++.|.++.
T Consensus 596 ~vmrrd~~~a~~vLp~I~k~---~rt~va~Fle~~g~~e~AL~~s---------~D~d~r---Felal~lgrl~iA~~la 660 (794)
T KOG0276|consen 596 LVLRRDLEVADGVLPTIPKE---IRTKVAHFLESQGMKEQALELS---------TDPDQR---FELALKLGRLDIAFDLA 660 (794)
T ss_pred HhhhccccccccccccCchh---hhhhHHhHhhhccchHhhhhcC---------CChhhh---hhhhhhcCcHHHHHHHH
Confidence 34456777777766666532 3345556666777777766532 222111 12334556666666654
Q ss_pred HHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH
Q 007400 341 GFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKI 420 (605)
Q Consensus 341 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~ 420 (605)
.+. .+..-|..|.++..+.|++..|.+.|.... -|..|+-.+...|+.+....+-....+.|..
T Consensus 661 ~e~------~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~------d~~~LlLl~t~~g~~~~l~~la~~~~~~g~~---- 724 (794)
T KOG0276|consen 661 VEA------NSEVKWRQLGDAALSAGELPLASECFLRAR------DLGSLLLLYTSSGNAEGLAVLASLAKKQGKN---- 724 (794)
T ss_pred Hhh------cchHHHHHHHHHHhhcccchhHHHHHHhhc------chhhhhhhhhhcCChhHHHHHHHHHHhhccc----
Confidence 432 234556777777777777777777776433 3455666666666666555555555554421
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHc
Q 007400 421 TLAVILNACTHSGLVQEGLTYFESM 445 (605)
Q Consensus 421 ~~~~l~~~~~~~g~~~~a~~~~~~~ 445 (605)
|....++...|+++++.+++..-
T Consensus 725 --N~AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 725 --NLAFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred --chHHHHHHHcCCHHHHHHHHHhc
Confidence 22223445567777776666544
No 347
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=84.69 E-value=9.3 Score=31.04 Aligned_cols=108 Identities=14% Similarity=0.086 Sum_probs=66.3
Q ss_pred HHHHHHHHHH---HhccCcHHHHHHHHHHchHhhCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHhCCCCC-CHHHHHHH
Q 007400 419 KITLAVILNA---CTHSGLVQEGLTYFESMTHDLGIIPN-QEHHACLIELLAQAGCSDQLMNQLEKMPYEH-DSYLWNAL 493 (605)
Q Consensus 419 ~~~~~~l~~~---~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~l 493 (605)
....+.|+.. -...++.+++..+++.+. -+.|+ ...-..-...+...|++++|..+|.+..... ....-..|
T Consensus 7 ~~iv~gLi~~~~~aL~~~d~~D~e~lLdALr---vLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL 83 (153)
T TIGR02561 7 NRLLGGLIEVLMYALRSADPYDAQAMLDALR---VLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKAL 83 (153)
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH---HhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHH
Confidence 3444444443 345889999999999988 56666 3333344566889999999999999986333 32222333
Q ss_pred HHHHHh-cCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHH
Q 007400 494 HGVCRI-HGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLIN 548 (605)
Q Consensus 494 ~~~~~~-~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 548 (605)
...|.. .|| | .|...+......|.-.+++.+.+.+.
T Consensus 84 ~A~CL~al~D---------------p----~Wr~~A~~~le~~~~~~a~~Lv~al~ 120 (153)
T TIGR02561 84 LALCLNAKGD---------------A----EWHVHADEVLARDADADAVALVRALL 120 (153)
T ss_pred HHHHHHhcCC---------------h----HHHHHHHHHHHhCCCHhHHHHHHHHh
Confidence 333322 222 2 35555555556666666666666654
No 348
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=84.46 E-value=10 Score=32.71 Aligned_cols=74 Identities=15% Similarity=0.144 Sum_probs=53.3
Q ss_pred HhcCChHHHHHHHHhCCCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-CC---CCCchHHHHHHHHHhcCCch
Q 007400 466 AQAGCSDQLMNQLEKMPYE---HDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQ-NP---QSSATHGLLSSIYSALGKGR 538 (605)
Q Consensus 466 ~~~g~~~~A~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~p---~~~~~~~~l~~~~~~~g~~~ 538 (605)
.+.|+ +.|.+.|-.+... .++.....|+..|. ..+.+++..++-+++++ .| -|+..+..|+.++.+.|+++
T Consensus 118 sr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e 195 (203)
T PF11207_consen 118 SRFGD-QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYE 195 (203)
T ss_pred hccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchh
Confidence 34454 6677766665422 34555556665554 67899999999999998 22 26889999999999999998
Q ss_pred HHH
Q 007400 539 LVE 541 (605)
Q Consensus 539 ~a~ 541 (605)
.|-
T Consensus 196 ~AY 198 (203)
T PF11207_consen 196 QAY 198 (203)
T ss_pred hhh
Confidence 873
No 349
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.17 E-value=25 Score=35.75 Aligned_cols=94 Identities=15% Similarity=0.059 Sum_probs=41.7
Q ss_pred hcCChhHHHHHhccCCCCCchHHHHHHHHHHccCChHHHHHHHhhcCCCCceeHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 007400 100 KCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRF 179 (605)
Q Consensus 100 ~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 179 (605)
-.|+++.|..++..++++ ..+.++.-+.++|-.++|+++--. ... -.....+.|+++.|.++..+.
T Consensus 598 mrrd~~~a~~vLp~I~k~---~rt~va~Fle~~g~~e~AL~~s~D-----~d~---rFelal~lgrl~iA~~la~e~--- 663 (794)
T KOG0276|consen 598 LRRDLEVADGVLPTIPKE---IRTKVAHFLESQGMKEQALELSTD-----PDQ---RFELALKLGRLDIAFDLAVEA--- 663 (794)
T ss_pred hhccccccccccccCchh---hhhhHHhHhhhccchHhhhhcCCC-----hhh---hhhhhhhcCcHHHHHHHHHhh---
Confidence 345666665555555522 223344444555555555443221 110 112233444555554444332
Q ss_pred CCCCChhhHHHHHHHHhccCChHHHHHHHHH
Q 007400 180 SISCNEFSFAGILTICVKLEELKLTRQVHGQ 210 (605)
Q Consensus 180 ~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 210 (605)
-+..-|..|.++..+.+++..|.+.+..
T Consensus 664 ---~s~~Kw~~Lg~~al~~~~l~lA~EC~~~ 691 (794)
T KOG0276|consen 664 ---NSEVKWRQLGDAALSAGELPLASECFLR 691 (794)
T ss_pred ---cchHHHHHHHHHHhhcccchhHHHHHHh
Confidence 1233455555555555555555555443
No 350
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=84.00 E-value=7.5 Score=35.38 Aligned_cols=59 Identities=12% Similarity=0.063 Sum_probs=51.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHH
Q 007400 490 WNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLIN 548 (605)
Q Consensus 490 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 548 (605)
+......|...|.+.+|.++-++++.++|-+...+..|...+...|+--.|...++.+.
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 34456678899999999999999999999999999999999999999888888777763
No 351
>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones]
Probab=83.20 E-value=45 Score=32.05 Aligned_cols=115 Identities=14% Similarity=0.124 Sum_probs=78.8
Q ss_pred HHHHHHHHhcCChHHHHHHHHhCCCCC------CHHHH--HHHHHHHHhcCCHHHHHHHHHHHHhc---CCCC----Cch
Q 007400 459 ACLIELLAQAGCSDQLMNQLEKMPYEH------DSYLW--NALHGVCRIHGNIDMGRKVVDQLIDQ---NPQS----SAT 523 (605)
Q Consensus 459 ~~l~~~~~~~g~~~~A~~~~~~~~~~~------~~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~---~p~~----~~~ 523 (605)
..|.+.+..+|++++|.+++.+.+++. ...+- .--+..|...+|+-+|.-+-+++... .|+- ...
T Consensus 135 k~L~~ike~~Gdi~~Aa~il~el~VETygsm~~~ekV~fiLEQmrKOG~~~D~vra~i~skKI~~K~F~~~~~~~lKlky 214 (439)
T KOG1498|consen 135 KMLAKIKEEQGDIAEAADILCELQVETYGSMEKSEKVAFILEQMRLCLLRLDYVRAQIISKKINKKFFEKPDVQELKLKY 214 (439)
T ss_pred HHHHHHHHHcCCHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHhcCCccHHHHHHHH
Confidence 456667778888888888888775321 11111 11245778889999999988888765 3321 135
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHhCCCcCCCceeEEEECCEEEEEEeC
Q 007400 524 HGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVS 573 (605)
Q Consensus 524 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~ 573 (605)
|..+.....+.+.|=.+-+.|+..-.-|-.+....-|.++....-.|+..
T Consensus 215 Y~lmI~l~lh~~~Yl~v~~~Yraiy~t~~vk~d~~kw~~vL~~iv~f~~L 264 (439)
T KOG1498|consen 215 YELMIRLGLHDRAYLNVCRSYRAIYDTGNVKEDPEKWIEVLRSIVSFCVL 264 (439)
T ss_pred HHHHHHhcccccchhhHHHHHHHHhcccccccChhhhhhhhhhheeEEee
Confidence 66778888888888899999998887776666556677776666555553
No 352
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=83.02 E-value=86 Score=35.17 Aligned_cols=245 Identities=9% Similarity=-0.013 Sum_probs=128.5
Q ss_pred CChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCh-HHHHHHHhhcCCCCcchHHHHHHHH
Q 007400 183 CNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGEL-SDARRLFDETDARDVLTWTTMVSGY 261 (605)
Q Consensus 183 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~~~~~~~~~~li~~~ 261 (605)
+|+..-...+..+.+.+..+ +...+..+++ .++..+-...+.++.+.+.. .....+...+..+|+.+-...+.++
T Consensus 633 ~d~~VR~~Av~~L~~~~~~~-~~~~L~~aL~---D~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~~~d~~VR~~A~~aL 708 (897)
T PRK13800 633 PDPGVRRTAVAVLTETTPPG-FGPALVAALG---DGAAAVRRAAAEGLRELVEVLPPAPALRDHLGSPDPVVRAAALDVL 708 (897)
T ss_pred CCHHHHHHHHHHHhhhcchh-HHHHHHHHHc---CCCHHHHHHHHHHHHHHHhccCchHHHHHHhcCCCHHHHHHHHHHH
Confidence 55555556666665555433 3333333332 22333333444444333221 1112222333334555555555555
Q ss_pred HhcCChHHHHHHHhhCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhcccchHH-HHHHH
Q 007400 262 AKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKH-GKQVH 340 (605)
Q Consensus 262 ~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~-a~~~~ 340 (605)
...+..+ ...+...+..+|...-...+.++.+.+..+. +..... .++...-.....++...+..+. +...+
T Consensus 709 ~~~~~~~-~~~l~~~L~D~d~~VR~~Av~aL~~~~~~~~----l~~~l~---D~~~~VR~~aa~aL~~~~~~~~~~~~~L 780 (897)
T PRK13800 709 RALRAGD-AALFAAALGDPDHRVRIEAVRALVSVDDVES----VAGAAT---DENREVRIAVAKGLATLGAGGAPAGDAV 780 (897)
T ss_pred HhhccCC-HHHHHHHhcCCCHHHHHHHHHHHhcccCcHH----HHHHhc---CCCHHHHHHHHHHHHHhccccchhHHHH
Confidence 5443211 2234455566777666666777666654432 122222 4555555566666666654432 23334
Q ss_pred HHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH
Q 007400 341 GFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKI 420 (605)
Q Consensus 341 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~ 420 (605)
..+.+ .++..+-...+..+.+.|..+.+...+......++...-...+.++...+. +++...+..+++ .|+..
T Consensus 781 ~~ll~---D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~-~~a~~~L~~~L~---D~~~~ 853 (897)
T PRK13800 781 RALTG---DPDPLVRAAALAALAELGCPPDDVAAATAALRASAWQVRQGAARALAGAAA-DVAVPALVEALT---DPHLD 853 (897)
T ss_pred HHHhc---CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhcCCChHHHHHHHHHHHhccc-cchHHHHHHHhc---CCCHH
Confidence 44433 345677777888888888766554334333333366566666777777665 446666666664 56777
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHch
Q 007400 421 TLAVILNACTHSGLVQEGLTYFESMT 446 (605)
Q Consensus 421 ~~~~l~~~~~~~g~~~~a~~~~~~~~ 446 (605)
.-...+.++.+......+...+..+.
T Consensus 854 VR~~A~~aL~~~~~~~~a~~~L~~al 879 (897)
T PRK13800 854 VRKAAVLALTRWPGDPAARDALTTAL 879 (897)
T ss_pred HHHHHHHHHhccCCCHHHHHHHHHHH
Confidence 77777777777533445666666665
No 353
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=82.61 E-value=3.6 Score=36.20 Aligned_cols=86 Identities=8% Similarity=-0.007 Sum_probs=54.7
Q ss_pred HHhccCcHHHHHHHHHHchHhhCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHH-HHHHHHHHHHhcCCHH
Q 007400 428 ACTHSGLVQEGLTYFESMTHDLGIIPNQ-EHHACLIELLAQAGCSDQLMNQLEKM-PYEHDSY-LWNALHGVCRIHGNID 504 (605)
Q Consensus 428 ~~~~~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~-~~~~l~~~~~~~g~~~ 504 (605)
.|.....++.|+..|.+.+ -+.|+. .-|+.=+.++.+..+++.+.+--.+. .+.|+.. ....++........++
T Consensus 19 k~f~~k~y~~ai~~y~raI---~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~ 95 (284)
T KOG4642|consen 19 KCFIPKRYDDAIDCYSRAI---CINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYD 95 (284)
T ss_pred cccchhhhchHHHHHHHHH---hcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhcccc
Confidence 3566667788888777776 566775 44555566666777777666554443 3344433 3444555666777788
Q ss_pred HHHHHHHHHHhc
Q 007400 505 MGRKVVDQLIDQ 516 (605)
Q Consensus 505 ~A~~~~~~~~~~ 516 (605)
.|+..++++.++
T Consensus 96 eaI~~Lqra~sl 107 (284)
T KOG4642|consen 96 EAIKVLQRAYSL 107 (284)
T ss_pred HHHHHHHHHHHH
Confidence 888888887655
No 354
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=82.56 E-value=9.6 Score=30.30 Aligned_cols=73 Identities=12% Similarity=0.023 Sum_probs=48.8
Q ss_pred CCCHHHHHHHHHHHHhcCChHH---HHHHHHhCC--CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchH
Q 007400 452 IPNQEHHACLIELLAQAGCSDQ---LMNQLEKMP--YEH--DSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATH 524 (605)
Q Consensus 452 ~p~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~--~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 524 (605)
.++..+-..+.+++.+..+.++ -+.++++.- -.| .......|+-++.+.++++.++.+.+..++.+|+|..+.
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~ 108 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQAL 108 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHH
Confidence 5555666667777777665443 444555442 112 233445567788899999999999999999999776543
No 355
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=82.15 E-value=33 Score=33.33 Aligned_cols=120 Identities=10% Similarity=0.045 Sum_probs=73.3
Q ss_pred CHHHHHHHHHHHhccCcHHHHHHHHHHchHhhC--CCCCHHHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHH-
Q 007400 418 DKITLAVILNACTHSGLVQEGLTYFESMTHDLG--IIPNQEHHACLIELLAQAGCSDQLMNQLEKMP--YEHDSYLWNA- 492 (605)
Q Consensus 418 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~- 492 (605)
-..++..+...+...|+.+.|.++++++.-..+ +.|. |..+.. -...|. .++. ..-|...|.+
T Consensus 39 HidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~---F~~~~~-~~~~g~--------~rL~~~~~eNR~fflal 106 (360)
T PF04910_consen 39 HIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPS---FSPFRS-NLTSGN--------CRLDYRRPENRQFFLAL 106 (360)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHH---hhhhhc-ccccCc--------cccCCccccchHHHHHH
Confidence 345777777778888888888888877651110 0010 000000 000000 0111 1224444444
Q ss_pred --HHHHHHhcCCHHHHHHHHHHHHhcCCC-CCchHHHHHHHHH-hcCCchHHHHHHHHHHh
Q 007400 493 --LHGVCRIHGNIDMGRKVVDQLIDQNPQ-SSATHGLLSSIYS-ALGKGRLVEKVRQLINE 549 (605)
Q Consensus 493 --l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~-~~g~~~~a~~~~~~~~~ 549 (605)
.+..+.++|-+..|+++.+-++.++|. |+-.....++.|. +++.++--+++.+....
T Consensus 107 ~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 107 FRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 466778899999999999999999998 7777777777766 67888888888776654
No 356
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=82.14 E-value=69 Score=33.46 Aligned_cols=242 Identities=8% Similarity=0.001 Sum_probs=138.4
Q ss_pred hHHHHHHHHHHHHCCCCCChHHHH-HHHHH-HhcccchHHHHHHHHHHHH-------cCCCCChhHHHHHHHHHHhcC--
Q 007400 298 GQKALELFTRMMILRIRPNQHTFS-SCLCA-CASIVSLKHGKQVHGFLIR-------TNFRSNTIVMSSLIDMYSKCG-- 366 (605)
Q Consensus 298 ~~~a~~~~~~m~~~g~~p~~~~~~-~ll~~-~~~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~g-- 366 (605)
...|..+++...+.|..-...... ....+ .....+.+.|..+++.+.+ .+ .+.....+..+|.+..
T Consensus 228 ~~~a~~~~~~~a~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~ 304 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGV 304 (552)
T ss_pred hhHHHHHHHHHHhhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCC
Confidence 567888888888766322111111 11222 4466799999999999877 45 3445566777777643
Q ss_pred ---ChHHHHHHHHhcCCCCCcchHHHHHHHHHHc---CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh----ccCcHH
Q 007400 367 ---CLNDGRQVFDLTDNKENSMLWNTMISALTQH---GYDEQAIRLFHDMVRSSVKPDKITLAVILNACT----HSGLVQ 436 (605)
Q Consensus 367 ---~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~----~~g~~~ 436 (605)
+.+.|..+|.......++..-..+...+... .+...|.++|......|.. ..+..+..+|. -..+..
T Consensus 305 ~~~d~~~A~~~~~~aA~~g~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~---~A~~~la~~y~~G~gv~r~~~ 381 (552)
T KOG1550|consen 305 EKIDYEKALKLYTKAAELGNPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHI---LAIYRLALCYELGLGVERNLE 381 (552)
T ss_pred ccccHHHHHHHHHHHHhcCCchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCCh---HHHHHHHHHHHhCCCcCCCHH
Confidence 6677999998776554555555555554433 4678999999999988733 33333333322 345788
Q ss_pred HHHHHHHHchHhhCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhC---CCCCCHHHHHHHH---H-HHHh----cCCHHH
Q 007400 437 EGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKM---PYEHDSYLWNALH---G-VCRI----HGNIDM 505 (605)
Q Consensus 437 ~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~~~~~~~~~l~---~-~~~~----~g~~~~ 505 (605)
.|..++.+.- +.+ .|....-...+..+.. +.++.+.-.+..+ .. ....+-...+ . .... ..+.+.
T Consensus 382 ~A~~~~k~aA-~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~-~~~q~~a~~l~~~~~~~~~~~~~~~~~~~ 457 (552)
T KOG1550|consen 382 LAFAYYKKAA-EKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELGY-EVAQSNAAYLLDQSEEDLFSRGVISTLER 457 (552)
T ss_pred HHHHHHHHHH-Hcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhh-hHHhhHHHHHHHhccccccccccccchhH
Confidence 9999999988 435 3332222222233333 5555555444332 20 1111110000 0 0111 125566
Q ss_pred HHHHHHHHHhcCCCCCchHHHHHHHHHhc----CCchHHHHHHHHHHhCC
Q 007400 506 GRKVVDQLIDQNPQSSATHGLLSSIYSAL----GKGRLVEKVRQLINERQ 551 (605)
Q Consensus 506 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~----g~~~~a~~~~~~~~~~~ 551 (605)
+...+.++.... +......|+++|... .+++.|...+....+.+
T Consensus 458 ~~~~~~~a~~~g--~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~ 505 (552)
T KOG1550|consen 458 AFSLYSRAAAQG--NADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG 505 (552)
T ss_pred HHHHHHHHHhcc--CHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh
Confidence 666666655443 566777777777765 34777888888777665
No 357
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=81.59 E-value=59 Score=32.32 Aligned_cols=120 Identities=11% Similarity=0.035 Sum_probs=72.6
Q ss_pred HHHHcCCHHHHHHHHHHHH---HCC--CCCCH---HHHHHHHHHHhccCcHHHHHHHHHHchH------hhCCCCCHHHH
Q 007400 393 ALTQHGYDEQAIRLFHDMV---RSS--VKPDK---ITLAVILNACTHSGLVQEGLTYFESMTH------DLGIIPNQEHH 458 (605)
Q Consensus 393 ~~~~~g~~~~a~~~~~~m~---~~~--~~p~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~------~~~~~p~~~~~ 458 (605)
.+...|++.+|.+++...- ..| +.|.. ..++.+.-.+.+.|.+..+..+|.++.+ ..|+.|...
T Consensus 249 ~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~-- 326 (696)
T KOG2471|consen 249 LEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKT-- 326 (696)
T ss_pred HHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcc--
Confidence 4556788888888775432 112 12211 2235555555666777777777776652 012222110
Q ss_pred HHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhc
Q 007400 459 ACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSAL 534 (605)
Q Consensus 459 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 534 (605)
..+.......+....+-.|...|+.-.|.+.|.++....-.+|..|..|+.+|...
T Consensus 327 --------------------~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCima 382 (696)
T KOG2471|consen 327 --------------------FTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCIMA 382 (696)
T ss_pred --------------------eehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 00111223334445566778889999999999999998777889999999998764
No 358
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=81.23 E-value=11 Score=28.21 Aligned_cols=59 Identities=12% Similarity=0.084 Sum_probs=37.9
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHH
Q 007400 168 EGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIV 227 (605)
Q Consensus 168 ~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 227 (605)
+..+-++.+....+.|++....+.+++|.+.+++..|.++++-++...- .....|..++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~-~~~~~Y~~~l 86 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCG-NKKEIYPYIL 86 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTT-T-TTHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc-ChHHHHHHHH
Confidence 4555666666777888888888888888888888888888887765432 2222555444
No 359
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=80.88 E-value=3.4 Score=21.90 Aligned_cols=18 Identities=28% Similarity=0.270 Sum_probs=7.7
Q ss_pred HHHHHHhcCChHHHHHHH
Q 007400 461 LIELLAQAGCSDQLMNQL 478 (605)
Q Consensus 461 l~~~~~~~g~~~~A~~~~ 478 (605)
+...+...|++++|..++
T Consensus 7 la~~~~~~G~~~eA~~~l 24 (26)
T PF07721_consen 7 LARALLAQGDPDEAERLL 24 (26)
T ss_pred HHHHHHHcCCHHHHHHHH
Confidence 334444444444444443
No 360
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=80.74 E-value=9.8 Score=35.38 Aligned_cols=93 Identities=6% Similarity=-0.125 Sum_probs=73.8
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHhCC----CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHH
Q 007400 455 QEHHACLIELLAQAGCSDQLMNQLEKMP----YEH--DSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLS 528 (605)
Q Consensus 455 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 528 (605)
...|..=+.-|.+..++..|...|.+-- -.| +...|+.-+.+..-.|++..|+.-..+++..+|.+..+|..=+
T Consensus 81 Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~A 160 (390)
T KOG0551|consen 81 AENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGA 160 (390)
T ss_pred HHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhh
Confidence 3455555667888889999999987641 123 3556766676777789999999999999999999999999999
Q ss_pred HHHHhcCCchHHHHHHHHH
Q 007400 529 SIYSALGKGRLVEKVRQLI 547 (605)
Q Consensus 529 ~~~~~~g~~~~a~~~~~~~ 547 (605)
.++....++++|....++.
T Consensus 161 kc~~eLe~~~~a~nw~ee~ 179 (390)
T KOG0551|consen 161 KCLLELERFAEAVNWCEEG 179 (390)
T ss_pred HHHHHHHHHHHHHHHHhhh
Confidence 9999999988887776654
No 361
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=80.74 E-value=57 Score=31.57 Aligned_cols=125 Identities=11% Similarity=0.070 Sum_probs=78.0
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHH--------HHHHHHHHhccCcHHHHHHHHHHchHhhCCCCC----HHHHHHHHH
Q 007400 396 QHGYDEQAIRLFHDMVRSSVKPDKIT--------LAVILNACTHSGLVQEGLTYFESMTHDLGIIPN----QEHHACLIE 463 (605)
Q Consensus 396 ~~g~~~~a~~~~~~m~~~~~~p~~~~--------~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~ 463 (605)
..+++.+|.++-+.....-..-|..+ |..+-.++...|+...-..++....+...+..| ....+.|++
T Consensus 138 d~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qavLiN~LLr 217 (493)
T KOG2581|consen 138 DQKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTATLRHDEEGQAVLINLLLR 217 (493)
T ss_pred hhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcchhHHHHHHHHHH
Confidence 34677777776665543322223333 333344556677766666666655433333333 445677888
Q ss_pred HHHhcCChHHHHHHHHhCCCCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 007400 464 LLAQAGCSDQLMNQLEKMPYEHD------SYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQS 520 (605)
Q Consensus 464 ~~~~~g~~~~A~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 520 (605)
.|...+.++.|..+..+...+.. ...+..++..-+.++++..|.+.+-+++...|.+
T Consensus 218 ~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~ 280 (493)
T KOG2581|consen 218 NYLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQH 280 (493)
T ss_pred HHhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcch
Confidence 88889999999999988753211 1112234555667889999999999998888853
No 362
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=80.73 E-value=34 Score=29.03 Aligned_cols=69 Identities=17% Similarity=0.055 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc---cCcHHHHHHHHHHchHhh----CCCCC-HHHHHHHHHHHHhcC
Q 007400 400 DEQAIRLFHDMVRSSVKPDKITLAVILNACTH---SGLVQEGLTYFESMTHDL----GIIPN-QEHHACLIELLAQAG 469 (605)
Q Consensus 400 ~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~----~~~p~-~~~~~~l~~~~~~~g 469 (605)
++.|.+.++.-...+ +.|...++.-..++.. .....++..++++...+. .+.|+ ..++.++..+|...+
T Consensus 7 FE~ark~aea~y~~n-P~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A 83 (186)
T PF06552_consen 7 FEHARKKAEAAYAKN-PLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLA 83 (186)
T ss_dssp HHHHHHHHHHHHHH--TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-cHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHH
Confidence 455666666544432 2244444444444333 334455666666655332 45666 456666666665543
No 363
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=80.52 E-value=21 Score=26.50 Aligned_cols=63 Identities=13% Similarity=0.104 Sum_probs=48.6
Q ss_pred ChhHHHHHHHHHHHcCCCCChhhHHHHHHHhhhcCChhHHHHHHHHHHHhCCCCCchhhHHHHHH
Q 007400 32 QLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLIS 96 (605)
Q Consensus 32 ~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 96 (605)
+.-++..-+..+...++-|++....+.+++|.+-.|+..|.++++.++..-.. ... .|..+++
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~-~~~-~y~~~lq 84 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGA-HKE-IYPYILQ 84 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccC-chh-hHHHHHH
Confidence 55566777777788888899999999999999999999999999988754432 222 5665554
No 364
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=80.24 E-value=6.5 Score=35.95 Aligned_cols=53 Identities=6% Similarity=0.023 Sum_probs=41.5
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHH
Q 007400 496 VCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLIN 548 (605)
Q Consensus 496 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 548 (605)
-..+.|+.++|..+|+.++.+.|+++..+..++......++.-+|-+.|-+..
T Consensus 125 ~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~AL 177 (472)
T KOG3824|consen 125 RSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKAL 177 (472)
T ss_pred HHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheee
Confidence 34567888888888888888888888888888888877777777777765543
No 365
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=78.96 E-value=74 Score=31.83 Aligned_cols=79 Identities=10% Similarity=0.023 Sum_probs=49.5
Q ss_pred HHHHHHHHHHcCCCCChhhHHHHHHHhhhcCChhHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCChhHHHHHhccCC
Q 007400 36 AISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIP 115 (605)
Q Consensus 36 a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 115 (605)
...+|...... +..|...|...+..|.+.+.+.+...++..++..+|..+...++.+ ..-|-....++.|..+|.+-.
T Consensus 90 Iv~lyr~at~r-f~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA-~wefe~n~ni~saRalflrgL 167 (568)
T KOG2396|consen 90 IVFLYRRATNR-FNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAA-KWEFEINLNIESARALFLRGL 167 (568)
T ss_pred HHHHHHHHHHh-cCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhh-hhHHhhccchHHHHHHHHHHh
Confidence 34444444332 3457777778887777777788888888888877777666534322 222334444777777777665
Q ss_pred C
Q 007400 116 V 116 (605)
Q Consensus 116 ~ 116 (605)
+
T Consensus 168 R 168 (568)
T KOG2396|consen 168 R 168 (568)
T ss_pred h
Confidence 3
No 366
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=78.80 E-value=53 Score=30.07 Aligned_cols=49 Identities=12% Similarity=0.044 Sum_probs=32.3
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHCCCCCChHHH-------HHHHHHHhcccchHHH
Q 007400 288 LIAGYTRNGLGQKALELFTRMMILRIRPNQHTF-------SSCLCACASIVSLKHG 336 (605)
Q Consensus 288 l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~-------~~ll~~~~~~~~~~~a 336 (605)
+.+...+.+++++|+..|.++...|+..+..+. ..+...|...|+....
T Consensus 9 ~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l 64 (421)
T COG5159 9 LANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSL 64 (421)
T ss_pred HHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchH
Confidence 445566778889999999999888877766543 3344445555544433
No 367
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=78.58 E-value=49 Score=32.50 Aligned_cols=52 Identities=15% Similarity=0.167 Sum_probs=29.5
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHh--ccCcHHHHHHHHHHch
Q 007400 394 LTQHGYDEQAIRLFHDMVRSSVKPDKI--TLAVILNACT--HSGLVQEGLTYFESMT 446 (605)
Q Consensus 394 ~~~~g~~~~a~~~~~~m~~~~~~p~~~--~~~~l~~~~~--~~g~~~~a~~~~~~~~ 446 (605)
+...+++..|.++++.+... ++++.. .+..+..+|. ..-++++|.+.++...
T Consensus 141 l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~ 196 (379)
T PF09670_consen 141 LFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLL 196 (379)
T ss_pred HHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 44566777777777776665 444443 3344444443 3455666666666655
No 368
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=78.58 E-value=3.8 Score=35.77 Aligned_cols=55 Identities=13% Similarity=0.095 Sum_probs=38.7
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 007400 497 CRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQ 551 (605)
Q Consensus 497 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 551 (605)
..+.++.+.|.++|.+++++.|+....|..++....++|+++.|.+.|++..+.+
T Consensus 5 ~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ld 59 (287)
T COG4976 5 LAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELD 59 (287)
T ss_pred hcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCC
Confidence 3455677777777777777777777777777777777777777777777766544
No 369
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=78.47 E-value=7.9 Score=28.88 Aligned_cols=53 Identities=11% Similarity=0.024 Sum_probs=39.1
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCC---------CchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 007400 497 CRIHGNIDMGRKVVDQLIDQNPQS---------SATHGLLSSIYSALGKGRLVEKVRQLINE 549 (605)
Q Consensus 497 ~~~~g~~~~A~~~~~~~~~~~p~~---------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 549 (605)
..+.|++..|.+.+.+..+....+ ..+...++.++...|++++|...+++..+
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 346788988988888887762211 23445688888999999999999988754
No 370
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=78.16 E-value=1.1e+02 Score=33.54 Aligned_cols=19 Identities=26% Similarity=0.272 Sum_probs=13.5
Q ss_pred HHhcCChhHHHHHHHHHHH
Q 007400 27 LISKGQLSEAISSLDLLAQ 45 (605)
Q Consensus 27 ~~~~g~~~~a~~~~~~~~~ 45 (605)
+..+|++++|.+.|+++..
T Consensus 356 lf~q~~f~ea~~~F~~~~~ 374 (877)
T KOG2063|consen 356 LFLQKQFEEAMSLFEKSEI 374 (877)
T ss_pred HHHhhhHHHHHHHHHhhcc
Confidence 4567788888888877653
No 371
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=77.87 E-value=18 Score=26.24 Aligned_cols=65 Identities=22% Similarity=0.207 Sum_probs=37.1
Q ss_pred HHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhcCCCCcchHHHHHHHHHhcCChHHHH
Q 007400 205 RQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESAS 271 (605)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~ 271 (605)
.++++.+.+.|+- +......+-.+-...|+.+.|.+++..+. +.+..|..++.++...|.-+-|.
T Consensus 22 ~~v~d~ll~~~il-T~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA~ 86 (88)
T cd08819 22 RDVCDKCLEQGLL-TEEDRNRIEAATENHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELAR 86 (88)
T ss_pred HHHHHHHHhcCCC-CHHHHHHHHHhccccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhhh
Confidence 3455555555532 22222323222234577777777777777 77777777777777666655443
No 372
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=77.85 E-value=21 Score=30.83 Aligned_cols=75 Identities=17% Similarity=0.010 Sum_probs=54.7
Q ss_pred ChHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhC---CCCChhHHHHHHHHHHhcCChHHHH
Q 007400 165 AVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTG---FLSNVVISSSIVDAYAKCGELSDAR 240 (605)
Q Consensus 165 ~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~a~ 240 (605)
.-+.|...|-.+...+.--++.....+...|. ..+.+.+.+++-..++.- -.+|...+.+|+..|.+.|+++.|-
T Consensus 121 ~d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 121 GDQEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred CcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 44677777877877666656666666555555 668888888888777642 3567888888999998888888774
No 373
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=77.75 E-value=81 Score=31.65 Aligned_cols=39 Identities=3% Similarity=0.049 Sum_probs=20.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHH
Q 007400 493 LHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIY 531 (605)
Q Consensus 493 l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 531 (605)
+-.-|....++++|++++..+++.+..|..+...+..-+
T Consensus 211 v~~~Ys~~eN~~eai~Ilk~il~~d~k~~~ar~~~i~~l 249 (711)
T COG1747 211 VYKKYSENENWTEAIRILKHILEHDEKDVWARKEIIENL 249 (711)
T ss_pred HHHHhccccCHHHHHHHHHHHhhhcchhhhHHHHHHHHH
Confidence 334455556666666666666665444444444444433
No 374
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=77.25 E-value=7.7 Score=38.95 Aligned_cols=100 Identities=13% Similarity=0.089 Sum_probs=75.0
Q ss_pred hccCcHHHHHHHHHHchHhhCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHH
Q 007400 430 THSGLVQEGLTYFESMTHDLGIIPN--QEHHACLIELLAQAGCSDQLMNQLEKM-P-YEHDSYLWNALHGVCRIHGNIDM 505 (605)
Q Consensus 430 ~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~~~~~~~~~l~~~~~~~g~~~~ 505 (605)
...|+...|...+..+. ...|. ......|...+.+.|..-+|..++.+. . ....+.++..++.++....+++.
T Consensus 618 r~~gn~~~a~~cl~~a~---~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~ 694 (886)
T KOG4507|consen 618 RAVGNSTFAIACLQRAL---NLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISG 694 (886)
T ss_pred eecCCcHHHHHHHHHHh---ccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHH
Confidence 34788889999888877 44443 223456777778888877887777553 2 23345677788888988999999
Q ss_pred HHHHHHHHHhcCCCCCchHHHHHHHHH
Q 007400 506 GRKVVDQLIDQNPQSSATHGLLSSIYS 532 (605)
Q Consensus 506 A~~~~~~~~~~~p~~~~~~~~l~~~~~ 532 (605)
|++.|++++++.|+++.+-..|..+-+
T Consensus 695 a~~~~~~a~~~~~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 695 ALEAFRQALKLTTKCPECENSLKLIRC 721 (886)
T ss_pred HHHHHHHHHhcCCCChhhHHHHHHHHH
Confidence 999999999999999988887776655
No 375
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=76.95 E-value=61 Score=29.82 Aligned_cols=38 Identities=18% Similarity=0.199 Sum_probs=15.9
Q ss_pred HHHHHhcCChHHHHHHHHHHH----hCCCCCChhhHHHHHHH
Q 007400 157 IIGYAKSGAVEEGLKFYKVLR----RFSISCNEFSFAGILTI 194 (605)
Q Consensus 157 i~~~~~~~~~~~a~~~~~~m~----~~~~~p~~~~~~~ll~~ 194 (605)
...+.+.|+...+.++-.-|. +.+.++|......++..
T Consensus 17 a~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l 58 (260)
T PF04190_consen 17 ALILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIEL 58 (260)
T ss_dssp HHHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHH
T ss_pred HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 344556666665555544333 23444444443444333
No 376
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=76.90 E-value=61 Score=29.81 Aligned_cols=81 Identities=16% Similarity=0.184 Sum_probs=42.0
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHhhcCCCCcchHHHHHHHHHhcCChHHHHHHHhhCCCCChhhHHHHHHHHHhCCCh
Q 007400 219 NVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLG 298 (605)
Q Consensus 219 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 298 (605)
+......+...|.+.|++.+|+..|-.-..++...+..++..+...|...++ +.. ....+-.|...++.
T Consensus 89 dp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~----------dlf-i~RaVL~yL~l~n~ 157 (260)
T PF04190_consen 89 DPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEA----------DLF-IARAVLQYLCLGNL 157 (260)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--H----------HHH-HHHHHHHHHHTTBH
T ss_pred CHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcch----------hHH-HHHHHHHHHHhcCH
Confidence 5667777888888888888888666443332222222233333333332222 111 12233446667777
Q ss_pred HHHHHHHHHHHH
Q 007400 299 QKALELFTRMMI 310 (605)
Q Consensus 299 ~~a~~~~~~m~~ 310 (605)
..|...++...+
T Consensus 158 ~~A~~~~~~f~~ 169 (260)
T PF04190_consen 158 RDANELFDTFTS 169 (260)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 777777766554
No 377
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=76.77 E-value=33 Score=31.29 Aligned_cols=87 Identities=7% Similarity=0.109 Sum_probs=43.6
Q ss_pred HHHHHhCCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhcccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHh----
Q 007400 289 IAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSK---- 364 (605)
Q Consensus 289 ~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---- 364 (605)
|++++..++|.+++.+.-+--+.--+.-.......|-.|.+.+.+....++-..-....-.-+..-|..+++.|..
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLl 169 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLL 169 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHh
Confidence 6777788888887776655443211122223344444555666665555555544443222223334444444432
Q ss_pred -cCChHHHHHHH
Q 007400 365 -CGCLNDGRQVF 375 (605)
Q Consensus 365 -~g~~~~A~~~~ 375 (605)
.|.+++|+++.
T Consensus 170 PLG~~~eAeelv 181 (309)
T PF07163_consen 170 PLGHFSEAEELV 181 (309)
T ss_pred ccccHHHHHHHH
Confidence 35555555554
No 378
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=76.31 E-value=32 Score=30.60 Aligned_cols=120 Identities=5% Similarity=-0.077 Sum_probs=74.8
Q ss_pred HHHhcCChHHHHHHHHh-cCCCCCcch-HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCcHHH
Q 007400 361 MYSKCGCLNDGRQVFDL-TDNKENSML-WNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKI-TLAVILNACTHSGLVQE 437 (605)
Q Consensus 361 ~~~~~g~~~~A~~~~~~-~~~~~~~~~-~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~-~~~~l~~~~~~~g~~~~ 437 (605)
.|.....++.|+..|.+ +...|++.+ |+.-+-.+.+.++++.+..--.+.++ +.||.. ....+..+......++.
T Consensus 19 k~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralq--l~~N~vk~h~flg~~~l~s~~~~e 96 (284)
T KOG4642|consen 19 KCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQ--LDPNLVKAHYFLGQWLLQSKGYDE 96 (284)
T ss_pred cccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHh--cChHHHHHHHHHHHHHHhhccccH
Confidence 34555677888887765 445566644 55667778888888888887777777 678765 45556666777788888
Q ss_pred HHHHHHHchH---hhCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhCC
Q 007400 438 GLTYFESMTH---DLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMP 482 (605)
Q Consensus 438 a~~~~~~~~~---~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 482 (605)
|+..+.+... ...+.|..++...|..+-...=...+..++.++..
T Consensus 97 aI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q~~E 144 (284)
T KOG4642|consen 97 AIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQELE 144 (284)
T ss_pred HHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHHHhh
Confidence 8888888742 22333334455544443333333344444444443
No 379
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=76.12 E-value=6.1 Score=27.94 Aligned_cols=45 Identities=9% Similarity=0.019 Sum_probs=32.3
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCchHH---HHHHHHHhcCCchHHHHH
Q 007400 499 IHGNIDMGRKVVDQLIDQNPQSSATHG---LLSSIYSALGKGRLVEKV 543 (605)
Q Consensus 499 ~~g~~~~A~~~~~~~~~~~p~~~~~~~---~l~~~~~~~g~~~~a~~~ 543 (605)
.+.+.++|+..++++++..++.+.-+. .|+.+|...|++.+.+.+
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567788888888888888665554444 566677777888777665
No 380
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=75.96 E-value=61 Score=29.35 Aligned_cols=181 Identities=13% Similarity=0.162 Sum_probs=102.4
Q ss_pred hcCChHHHHHHHhhCCC----C---ChhhHHHHHHHHHhCCChHHHHHHHHHHHHC---CC--CCChHHHHHHHHHHhcc
Q 007400 263 KLGDMESASKLFNEMPE----K---NPVSWTTLIAGYTRNGLGQKALELFTRMMIL---RI--RPNQHTFSSCLCACASI 330 (605)
Q Consensus 263 ~~~~~~~A~~~~~~~~~----~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~---g~--~p~~~~~~~ll~~~~~~ 330 (605)
+....++|+.-|.++.+ + .-.+.-.++..+.+.|++++..+.|.+++.- .+ .-+..+.+.++......
T Consensus 39 ~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS 118 (440)
T KOG1464|consen 39 KEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTS 118 (440)
T ss_pred cccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhh
Confidence 34567888888887654 2 2234556778888888888888888887641 11 22344566666666666
Q ss_pred cchHHHHHHHHHHHH----c-CCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCCC-------C-------CcchHHHHH
Q 007400 331 VSLKHGKQVHGFLIR----T-NFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNK-------E-------NSMLWNTMI 391 (605)
Q Consensus 331 ~~~~~a~~~~~~~~~----~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~-------~~~~~~~l~ 391 (605)
.+.+....+++.-++ . +-..=-.+-+.|...|...|.+....+++.++... . -...|..-|
T Consensus 119 ~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEI 198 (440)
T KOG1464|consen 119 KNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEI 198 (440)
T ss_pred hhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHh
Confidence 666655555544332 1 11111223345667777777777777776655411 0 123566666
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHH-----hccCcHHHHHHHHHH
Q 007400 392 SALTQHGYDEQAIRLFHDMVRSS-VKPDKITLAVILNAC-----THSGLVQEGLTYFES 444 (605)
Q Consensus 392 ~~~~~~g~~~~a~~~~~~m~~~~-~~p~~~~~~~l~~~~-----~~~g~~~~a~~~~~~ 444 (605)
+.|...++-..-..+|++.+.-. .-|.+... .+++-| .+.|.+++|..-|-+
T Consensus 199 QmYT~qKnNKkLK~lYeqalhiKSAIPHPlIm-GvIRECGGKMHlreg~fe~AhTDFFE 256 (440)
T KOG1464|consen 199 QMYTEQKNNKKLKALYEQALHIKSAIPHPLIM-GVIRECGGKMHLREGEFEKAHTDFFE 256 (440)
T ss_pred hhhhhhcccHHHHHHHHHHHHhhccCCchHHH-hHHHHcCCccccccchHHHHHhHHHH
Confidence 77777776666667777655321 22343333 333333 356677766544333
No 381
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=75.47 E-value=9.3 Score=27.66 Aligned_cols=34 Identities=15% Similarity=0.269 Sum_probs=17.5
Q ss_pred hcCChhHHHHHhccCCCCCchHHHHHHHHHHccCC
Q 007400 100 KCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGM 134 (605)
Q Consensus 100 ~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~ 134 (605)
..|+.+.|.+++..++ ..+..|..+++++...|.
T Consensus 48 ~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~ 81 (88)
T cd08819 48 NHGNESGARELLKRIV-QKEGWFSKFLQALRETEH 81 (88)
T ss_pred ccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCc
Confidence 3355555555555555 555555555555554444
No 382
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=75.44 E-value=1.3e+02 Score=32.69 Aligned_cols=218 Identities=15% Similarity=0.038 Sum_probs=113.5
Q ss_pred HHhcccchHHHHHHHHHHHHcCCCCChh-------HHHHH-HHHHHhcCChHHHHHHHHhcCCC-------CCcchHHHH
Q 007400 326 ACASIVSLKHGKQVHGFLIRTNFRSNTI-------VMSSL-IDMYSKCGCLNDGRQVFDLTDNK-------ENSMLWNTM 390 (605)
Q Consensus 326 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~l-~~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~~l 390 (605)
......++.+|..+..++...-..|+.. .++.| .......|+++.|.++.+..... +....+..+
T Consensus 424 ~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~ 503 (894)
T COG2909 424 LLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVL 503 (894)
T ss_pred HHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhh
Confidence 3445667777877777766532222211 22222 22334568888888877653321 345567777
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHH---HHHHHH--HHHhccCcHH--HHHHHHHHchHhhC-CC----CCHHHH
Q 007400 391 ISALTQHGYDEQAIRLFHDMVRSSVKPDKI---TLAVIL--NACTHSGLVQ--EGLTYFESMTHDLG-II----PNQEHH 458 (605)
Q Consensus 391 ~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~---~~~~l~--~~~~~~g~~~--~a~~~~~~~~~~~~-~~----p~~~~~ 458 (605)
..+..-.|++++|..+.++..+..-.-+.. .+..+. ..+...|... +....+........ -. +-..++
T Consensus 504 ~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r 583 (894)
T COG2909 504 GEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIR 583 (894)
T ss_pred hHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHH
Confidence 788888999999998887665532222332 222222 2355666332 23333333321111 11 123344
Q ss_pred HHHHHHHHhcCChHHHHHHHHhC----C-CCC---CHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCCCCchHH--
Q 007400 459 ACLIELLAQAGCSDQLMNQLEKM----P-YEH---DSY-LWNALHGVCRIHGNIDMGRKVVDQLIDQ--NPQSSATHG-- 525 (605)
Q Consensus 459 ~~l~~~~~~~g~~~~A~~~~~~~----~-~~~---~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~-- 525 (605)
..+..++.+ .+.+..-.... . ..| +.. .+..++......|+.++|...+.++..+ .+.-...|.
T Consensus 584 ~~ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~ 660 (894)
T COG2909 584 AQLLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAA 660 (894)
T ss_pred HHHHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHH
Confidence 555555554 33333222211 1 112 221 2235677788899999999999999887 332111121
Q ss_pred -HHH--HHHHhcCCchHHHHHHHH
Q 007400 526 -LLS--SIYSALGKGRLVEKVRQL 546 (605)
Q Consensus 526 -~l~--~~~~~~g~~~~a~~~~~~ 546 (605)
..+ ......|+.+++.....+
T Consensus 661 ~~~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 661 AYKVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HHHhhHHHhcccCCHHHHHHHHHh
Confidence 122 222346888877766554
No 383
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=75.29 E-value=13 Score=21.82 Aligned_cols=29 Identities=14% Similarity=0.011 Sum_probs=16.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHH--HHHhcCC
Q 007400 490 WNALHGVCRIHGNIDMGRKVVD--QLIDQNP 518 (605)
Q Consensus 490 ~~~l~~~~~~~g~~~~A~~~~~--~~~~~~p 518 (605)
+..++..+..+|++++|+.+++ -+..++|
T Consensus 4 ~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~ 34 (36)
T PF07720_consen 4 LYGLAYNFYQKGKYDEAIHFFQYAFLCALDK 34 (36)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHhcc
Confidence 4455556666677777777733 5554444
No 384
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=74.64 E-value=18 Score=32.09 Aligned_cols=63 Identities=13% Similarity=0.115 Sum_probs=42.9
Q ss_pred HHHHHHHHHHhcCCHH-------HHHHHHHHHHhcC--CCC----CchHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 007400 489 LWNALHGVCRIHGNID-------MGRKVVDQLIDQN--PQS----SATHGLLSSIYSALGKGRLVEKVRQLINERQ 551 (605)
Q Consensus 489 ~~~~l~~~~~~~g~~~-------~A~~~~~~~~~~~--p~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 551 (605)
.+..+++.|...|+.+ .|.+.|+++.+.. |.. ......+|.+..+.|++++|.+.|..+...+
T Consensus 120 l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 120 LCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred HHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence 4455667777777644 4555555555542 222 3566678999999999999999999887543
No 385
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=74.62 E-value=5.9 Score=21.33 Aligned_cols=28 Identities=18% Similarity=0.008 Sum_probs=24.7
Q ss_pred chHHHHHHHHHhcCCchHHHHHHHHHHh
Q 007400 522 ATHGLLSSIYSALGKGRLVEKVRQLINE 549 (605)
Q Consensus 522 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 549 (605)
..+..++.++...|++++|...++...+
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~ 29 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALE 29 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 4678899999999999999999988765
No 386
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=74.34 E-value=8.4 Score=27.26 Aligned_cols=46 Identities=13% Similarity=0.128 Sum_probs=20.2
Q ss_pred ccCcHHHHHHHHHHchHhhCCCCC-HHHHHHHHHHHHhcCChHHHHH
Q 007400 431 HSGLVQEGLTYFESMTHDLGIIPN-QEHHACLIELLAQAGCSDQLMN 476 (605)
Q Consensus 431 ~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~ 476 (605)
...+.++|+..|+.+.++..-.|+ ..++..|+.+|...|++.++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~ 64 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLA 64 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555533222222 2234444444555555444443
No 387
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=74.22 E-value=16 Score=23.14 Aligned_cols=41 Identities=29% Similarity=0.416 Sum_probs=31.5
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 007400 21 IQSFLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQ 61 (605)
Q Consensus 21 ~~~~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~ 61 (605)
+..+....+.|-..++...++.|.+.|+..+...+..+++.
T Consensus 6 lGiL~~Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~~ 46 (48)
T PF11848_consen 6 LGILLLAKRRGLISEVKPLLDRLQQAGFRISPKLIEEILRR 46 (48)
T ss_pred HHHHHHHHHcCChhhHHHHHHHHHHcCcccCHHHHHHHHHH
Confidence 34445666778888888888888888888888888877764
No 388
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=73.51 E-value=1.1e+02 Score=30.91 Aligned_cols=48 Identities=8% Similarity=-0.050 Sum_probs=26.0
Q ss_pred cHHHHHHHHHHchHhhCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhC
Q 007400 434 LVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKM 481 (605)
Q Consensus 434 ~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 481 (605)
+.+....+...+..+.|..--...+..+..-|....++++|++++...
T Consensus 184 D~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~eN~~eai~Ilk~i 231 (711)
T COG1747 184 DKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENENWTEAIRILKHI 231 (711)
T ss_pred cHHHHHHHHHHHHHhhccchHHHHHHHHHHHhccccCHHHHHHHHHHH
Confidence 444455555555544444444445555555566666666666666644
No 389
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=72.66 E-value=9 Score=23.67 Aligned_cols=25 Identities=24% Similarity=0.202 Sum_probs=17.6
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHCC
Q 007400 288 LIAGYTRNGLGQKALELFTRMMILR 312 (605)
Q Consensus 288 l~~~~~~~g~~~~a~~~~~~m~~~g 312 (605)
+..+|...|+.+.|.++++++...|
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHcC
Confidence 5667777777777777777777543
No 390
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=72.56 E-value=46 Score=30.72 Aligned_cols=115 Identities=14% Similarity=0.104 Sum_probs=77.1
Q ss_pred CChhHHHHHHHHHHH-cCCCCChhhHHHHHHHhhh--cCChhHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCChhHH
Q 007400 31 GQLSEAISSLDLLAQ-RGIRLPAETLAFILQQCAE--SKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDA 107 (605)
Q Consensus 31 g~~~~a~~~~~~~~~-~g~~~~~~~~~~ll~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 107 (605)
.-..+|+.+|+...- ..+--|..+...+++.... +.....-.++.+.+........+..+-..++..++..+++..-
T Consensus 142 ~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl 221 (292)
T PF13929_consen 142 KIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKL 221 (292)
T ss_pred HHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHH
Confidence 445667777764322 2345577777788877764 2234445555555554422222322677888889999999999
Q ss_pred HHHhccCCC-----CCchHHHHHHHHHHccCChHHHHHHHhhc
Q 007400 108 RKVFDKIPV-----KNLFSYNNMLSGYANLGMMKHARNLFDNM 145 (605)
Q Consensus 108 ~~~~~~~~~-----~~~~~~~~li~~~~~~~~~~~A~~~~~~~ 145 (605)
.+.++.... .|...|..+|+.....|+..-...+.+.-
T Consensus 222 ~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~G 264 (292)
T PF13929_consen 222 FQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDG 264 (292)
T ss_pred HHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCC
Confidence 888887643 47788999999999999988887777663
No 391
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=72.41 E-value=19 Score=29.26 Aligned_cols=62 Identities=13% Similarity=0.158 Sum_probs=45.0
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCC
Q 007400 472 DQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGK 536 (605)
Q Consensus 472 ~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 536 (605)
+.|.++.+-|+ ........+......|++..|.++.+.++..+|+|.......+++|.+.|.
T Consensus 58 ~~A~~~v~l~G---G~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~ 119 (141)
T PF14863_consen 58 EEAKRYVELAG---GADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGY 119 (141)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHH
Confidence 45666666665 333344455567788999999999999999999999999999998877654
No 392
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=72.16 E-value=10 Score=21.40 Aligned_cols=27 Identities=11% Similarity=0.223 Sum_probs=21.2
Q ss_pred CHHHHHHHHHHHHhcCCCCCchHHHHHH
Q 007400 502 NIDMGRKVVDQLIDQNPQSSATHGLLSS 529 (605)
Q Consensus 502 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 529 (605)
.++.|..+|++.+...| +...|..++.
T Consensus 2 E~dRAR~IyeR~v~~hp-~~k~WikyAk 28 (32)
T PF02184_consen 2 EFDRARSIYERFVLVHP-EVKNWIKYAK 28 (32)
T ss_pred hHHHHHHHHHHHHHhCC-CchHHHHHHH
Confidence 57888999999888887 6777776654
No 393
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=71.99 E-value=38 Score=30.92 Aligned_cols=59 Identities=19% Similarity=0.193 Sum_probs=52.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 007400 492 ALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINER 550 (605)
Q Consensus 492 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 550 (605)
.+-.++.+.++++.|....++.+.++|.++.-+..-|-+|.+.|.+.-|++-++...+.
T Consensus 186 ~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~ 244 (269)
T COG2912 186 NLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEH 244 (269)
T ss_pred HHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHh
Confidence 34557788899999999999999999999999999999999999999999999876554
No 394
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=71.73 E-value=14 Score=34.05 Aligned_cols=85 Identities=12% Similarity=-0.032 Sum_probs=55.2
Q ss_pred hcCChhHHHHHHHHHHHcC---CCCChhhHHHHHHHhhhcCChhHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCChh
Q 007400 29 SKGQLSEAISSLDLLAQRG---IRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDV 105 (605)
Q Consensus 29 ~~g~~~~a~~~~~~~~~~g---~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 105 (605)
+..+++.++.++-+++..- ..|+ .+-..+++.|.+ -++.++..++..-+.-|..++.. +++.+|..+.+.+++.
T Consensus 76 ~~~~idd~~~~LyKlRhs~~a~~~~~-~~~~~~irlllk-y~pq~~i~~l~npIqYGiF~dqf-~~c~l~D~flk~~n~~ 152 (418)
T KOG4570|consen 76 SREEIDDAEYYLYKLRHSPNAWYLRN-WTIHTWIRLLLK-YDPQKAIYTLVNPIQYGIFPDQF-TFCLLMDSFLKKENYK 152 (418)
T ss_pred cccchhHHHHHHHHHhcCcchhhhcc-ccHHHHHHHHHc-cChHHHHHHHhCcchhccccchh-hHHHHHHHHHhcccHH
Confidence 3577788887777775432 1111 222333444332 25667777777777778877777 8888888888888888
Q ss_pred HHHHHhccCCC
Q 007400 106 DARKVFDKIPV 116 (605)
Q Consensus 106 ~a~~~~~~~~~ 116 (605)
+|.++.-+|..
T Consensus 153 ~aa~vvt~~~~ 163 (418)
T KOG4570|consen 153 DAASVVTEVMM 163 (418)
T ss_pred HHHHHHHHHHH
Confidence 88777666653
No 395
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=70.41 E-value=1.9e+02 Score=32.54 Aligned_cols=256 Identities=11% Similarity=0.007 Sum_probs=150.4
Q ss_pred HHHHhhcCCCCcchHHHHHHHHHhcCChHHHHHHHhhCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChHH
Q 007400 240 RRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHT 319 (605)
Q Consensus 240 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~ 319 (605)
..+.+.+..+|+.+-...+..+.+.+..+....+...+..++...-...+.++.+.+........+..+... +|...
T Consensus 624 ~~L~~~L~D~d~~VR~~Av~~L~~~~~~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~~---~d~~V 700 (897)
T PRK13800 624 AELAPYLADPDPGVRRTAVAVLTETTPPGFGPALVAALGDGAAAVRRAAAEGLRELVEVLPPAPALRDHLGS---PDPVV 700 (897)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHhhhcchhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCchHHHHHHhcC---CCHHH
Confidence 355555566777777777777777776554455555555666666666666665543322222333344432 55555
Q ss_pred HHHHHHHHhcccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCCCCCcchHHHHHHHHHHcCC
Q 007400 320 FSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGY 399 (605)
Q Consensus 320 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 399 (605)
-...+.++...+..+ .. .+-...+ .++..+-...+.++.+.+..+. +...+.. ++...-...+.++...+.
T Consensus 701 R~~A~~aL~~~~~~~-~~-~l~~~L~---D~d~~VR~~Av~aL~~~~~~~~---l~~~l~D-~~~~VR~~aa~aL~~~~~ 771 (897)
T PRK13800 701 RAAALDVLRALRAGD-AA-LFAAALG---DPDHRVRIEAVRALVSVDDVES---VAGAATD-ENREVRIAVAKGLATLGA 771 (897)
T ss_pred HHHHHHHHHhhccCC-HH-HHHHHhc---CCCHHHHHHHHHHHhcccCcHH---HHHHhcC-CCHHHHHHHHHHHHHhcc
Confidence 555666665443211 11 2222222 4555555666666666555432 2222333 366666667777777665
Q ss_pred HHH-HHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHchHhhCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 007400 400 DEQ-AIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQL 478 (605)
Q Consensus 400 ~~~-a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 478 (605)
.+. +...+..+.. .+|...-...+.++...|..+.+...+..+. + .++..+-...+.++.+.+.. ++...+
T Consensus 772 ~~~~~~~~L~~ll~---D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL-~---d~d~~VR~~Aa~aL~~l~~~-~a~~~L 843 (897)
T PRK13800 772 GGAPAGDAVRALTG---DPDPLVRAAALAALAELGCPPDDVAAATAAL-R---ASAWQVRQGAARALAGAAAD-VAVPAL 843 (897)
T ss_pred ccchhHHHHHHHhc---CCCHHHHHHHHHHHHhcCCcchhHHHHHHHh-c---CCChHHHHHHHHHHHhcccc-chHHHH
Confidence 443 3455555554 4677778888888888887655544444444 1 34566666677788887764 455555
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 007400 479 EKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLID 515 (605)
Q Consensus 479 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 515 (605)
..+...++..+....+.++...+....+...+.++++
T Consensus 844 ~~~L~D~~~~VR~~A~~aL~~~~~~~~a~~~L~~al~ 880 (897)
T PRK13800 844 VEALTDPHLDVRKAAVLALTRWPGDPAARDALTTALT 880 (897)
T ss_pred HHHhcCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHh
Confidence 5544467888888888888775445567777777766
No 396
>PRK10941 hypothetical protein; Provisional
Probab=70.17 E-value=43 Score=30.92 Aligned_cols=67 Identities=10% Similarity=0.053 Sum_probs=46.8
Q ss_pred HHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHH
Q 007400 459 ACLIELLAQAGCSDQLMNQLEKMP--YEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHG 525 (605)
Q Consensus 459 ~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 525 (605)
+.|-.+|.+.+++++|+...+.+- .+.++.-+.--+-.|.+.|.+..|..-++..++..|+++.+-.
T Consensus 185 ~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ 253 (269)
T PRK10941 185 DTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEM 253 (269)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHH
Confidence 345556777777777777777752 2345666666777788888888888888888888776665443
No 397
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=70.06 E-value=42 Score=24.80 Aligned_cols=63 Identities=22% Similarity=0.282 Sum_probs=44.2
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC--CchHHHHHHHHHhcCCch-HHHHHHHHH
Q 007400 485 HDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQS--SATHGLLSSIYSALGKGR-LVEKVRQLI 547 (605)
Q Consensus 485 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~~~-~a~~~~~~~ 547 (605)
.|......++..+...|+++.|++.+-.+++.+|+. ...-..+..++...|.-+ .+.++..++
T Consensus 20 ~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~plv~~~RRkL 85 (90)
T PF14561_consen 20 DDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDPLVSEYRRKL 85 (90)
T ss_dssp T-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCChHHHHHHHHH
Confidence 577888889999999999999999999999986653 566677888887777744 444444433
No 398
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=69.49 E-value=64 Score=30.39 Aligned_cols=119 Identities=12% Similarity=0.094 Sum_probs=80.2
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh------ccCcHHHHHHHHHHchHhhCCCCCHH-HHHHHHHHHHhcCCh
Q 007400 399 YDEQAIRLFHDMVRSSVKPDKITLAVILNACT------HSGLVQEGLTYFESMTHDLGIIPNQE-HHACLIELLAQAGCS 471 (605)
Q Consensus 399 ~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~------~~g~~~~a~~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~ 471 (605)
-++++..++.+....+. |.++.....|.++- ..-+|..-..+|+.+. .+.|++. +.|. .-+.....-+
T Consensus 271 lI~eg~all~rA~~~~~-pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~---~~apSPvV~LNR-AVAla~~~Gp 345 (415)
T COG4941 271 LIDEGLALLDRALASRR-PGPYQLQAAIAALHARARRAEDTDWPAIDALYDALE---QAAPSPVVTLNR-AVALAMREGP 345 (415)
T ss_pred HHHHHHHHHHHHHHcCC-CChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHH---HhCCCCeEeehH-HHHHHHhhhH
Confidence 35778888888888764 88887777776653 2346888888888877 4556643 3332 2334444556
Q ss_pred HHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc
Q 007400 472 DQLMNQLEKMPYEHD----SYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSA 522 (605)
Q Consensus 472 ~~A~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 522 (605)
+.++..++-+...|- ...+..-+..+.+.|+.++|...|++++.+.++...
T Consensus 346 ~agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~ae 400 (415)
T COG4941 346 AAGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIALARNAAE 400 (415)
T ss_pred HhHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCChHH
Confidence 677777776643322 223334567788999999999999999999775443
No 399
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=69.26 E-value=56 Score=29.91 Aligned_cols=87 Identities=15% Similarity=0.088 Sum_probs=44.6
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHh----
Q 007400 157 IIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAK---- 232 (605)
Q Consensus 157 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---- 232 (605)
|.+++..++|.+++...-+.-+..-+..+......|-.|.+.+.+..+.++-..-+...-.-+..-|..++..|..
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLl 169 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLL 169 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHh
Confidence 5666777777776655544433222223333444444556666666666665555543322233335555554433
Q ss_pred -cCChHHHHHHH
Q 007400 233 -CGELSDARRLF 243 (605)
Q Consensus 233 -~g~~~~a~~~~ 243 (605)
.|.+++|+++.
T Consensus 170 PLG~~~eAeelv 181 (309)
T PF07163_consen 170 PLGHFSEAEELV 181 (309)
T ss_pred ccccHHHHHHHH
Confidence 45566665544
No 400
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=69.09 E-value=1.8e+02 Score=31.67 Aligned_cols=218 Identities=12% Similarity=0.064 Sum_probs=119.0
Q ss_pred HHhcCChHHHHHHHhhCC----CCCh-------hhHHHHH-HHHHhCCChHHHHHHHHHHHHC----CCCCChHHHHHHH
Q 007400 261 YAKLGDMESASKLFNEMP----EKNP-------VSWTTLI-AGYTRNGLGQKALELFTRMMIL----RIRPNQHTFSSCL 324 (605)
Q Consensus 261 ~~~~~~~~~A~~~~~~~~----~~~~-------~~~~~l~-~~~~~~g~~~~a~~~~~~m~~~----g~~p~~~~~~~ll 324 (605)
.....++++|..+..++. .++. ..++++- ......|+++.|.++.+..... -..+....+..+.
T Consensus 425 ~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~ 504 (894)
T COG2909 425 LASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLG 504 (894)
T ss_pred HHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhh
Confidence 456788888888877654 2211 1344443 3445678999999988887653 1233344555666
Q ss_pred HHHhcccchHHHHHHHHHHHHcCCCCChhHHHHHH-----HHHHhcCCh--HHHHHHHHhcC-----CCC----CcchHH
Q 007400 325 CACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLI-----DMYSKCGCL--NDGRQVFDLTD-----NKE----NSMLWN 388 (605)
Q Consensus 325 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~-----~~~~~~g~~--~~A~~~~~~~~-----~~~----~~~~~~ 388 (605)
.+..-.|++++|..+.....+..-..+...+.... ..+...|+. .+....|..+. .+| -..+..
T Consensus 505 ~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~ 584 (894)
T COG2909 505 EAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRA 584 (894)
T ss_pred HHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHH
Confidence 67777899999998888877654344444333222 335566632 33333333222 221 112333
Q ss_pred HHHHHHHHc-CCHHHHHHHHHHHHHCCCCCCH--H--HHHHHHHHHhccCcHHHHHHHHHHchHhhCCCC----CHHHHH
Q 007400 389 TMISALTQH-GYDEQAIRLFHDMVRSSVKPDK--I--TLAVILNACTHSGLVQEGLTYFESMTHDLGIIP----NQEHHA 459 (605)
Q Consensus 389 ~l~~~~~~~-g~~~~a~~~~~~m~~~~~~p~~--~--~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p----~~~~~~ 459 (605)
.+..++.+. +...++..-+.-... ..|.. . .+..++......|+.+.|...++++. .....+ +...-.
T Consensus 585 ~ll~~~~r~~~~~~ear~~~~~~~~--~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~-~l~~~~~~~~~~~a~~ 661 (894)
T COG2909 585 QLLRAWLRLDLAEAEARLGIEVGSV--YTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELE-RLLLNGQYHVDYLAAA 661 (894)
T ss_pred HHHHHHHHHhhhhHHhhhcchhhhh--cccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH-HHhcCCCCCchHHHHH
Confidence 344444431 122222222222222 23332 2 23367788888999999999999887 322222 222222
Q ss_pred HHHH--HHHhcCChHHHHHHHHhC
Q 007400 460 CLIE--LLAQAGCSDQLMNQLEKM 481 (605)
Q Consensus 460 ~l~~--~~~~~g~~~~A~~~~~~~ 481 (605)
..+. .-...|+.+.+.....+-
T Consensus 662 ~~v~~~lwl~qg~~~~a~~~l~~s 685 (894)
T COG2909 662 YKVKLILWLAQGDKELAAEWLLKS 685 (894)
T ss_pred HHhhHHHhcccCCHHHHHHHHHhc
Confidence 2222 234678888888877664
No 401
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=69.04 E-value=1.3e+02 Score=29.98 Aligned_cols=36 Identities=14% Similarity=-0.008 Sum_probs=15.3
Q ss_pred HHHhccCCCCCchHHHHHHHHHHccCChHHHHHHHh
Q 007400 108 RKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFD 143 (605)
Q Consensus 108 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~ 143 (605)
..+.+.+..++..+.....+++...+.......+..
T Consensus 89 ~~L~~~L~d~~~~vr~aaa~ALg~i~~~~a~~~L~~ 124 (410)
T TIGR02270 89 RSVLAVLQAGPEGLCAGIQAALGWLGGRQAEPWLEP 124 (410)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHhcCCchHHHHHHHH
Confidence 333344444444444444444444444433333333
No 402
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=68.80 E-value=1.3e+02 Score=30.15 Aligned_cols=97 Identities=8% Similarity=-0.020 Sum_probs=72.4
Q ss_pred CCCH-HHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHH--hcCCHHHHHHHHHHHHhcCCCCCchHHH
Q 007400 452 IPNQ-EHHACLIELLAQAGCSDQLMNQLEKMP--YEHDSYLWNALHGVCR--IHGNIDMGRKVVDQLIDQNPQSSATHGL 526 (605)
Q Consensus 452 ~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~--~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 526 (605)
.|+. ..-+.+++.+.+.|-..+|...+.++. .+++...+..++..-. ..-+...++.+|+.|+.....++..|..
T Consensus 456 ~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~lpp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg~d~~lw~~ 535 (568)
T KOG2396|consen 456 GADSVTLKSKYLDWAYESGGYKKARKVYKSLQELPPFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFGADSDLWMD 535 (568)
T ss_pred CCceeehhHHHHHHHHHhcchHHHHHHHHHHHhCCCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhCCChHHHHH
Confidence 3443 344677888889999999999998763 2567777777765432 2335888999999999886678889998
Q ss_pred HHHHHHhcCCchHHHHHHHHHH
Q 007400 527 LSSIYSALGKGRLVEKVRQLIN 548 (605)
Q Consensus 527 l~~~~~~~g~~~~a~~~~~~~~ 548 (605)
+...-...|..+.+-.++.++.
T Consensus 536 y~~~e~~~g~~en~~~~~~ra~ 557 (568)
T KOG2396|consen 536 YMKEELPLGRPENCGQIYWRAM 557 (568)
T ss_pred HHHhhccCCCcccccHHHHHHH
Confidence 8888888898888877766554
No 403
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=67.84 E-value=12 Score=34.52 Aligned_cols=80 Identities=10% Similarity=0.008 Sum_probs=57.3
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHhC--CCCCCHHHHHH-HHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHH
Q 007400 451 IIPNQEHHACLIELLAQAGCSDQLMNQLEKM--PYEHDSYLWNA-LHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLL 527 (605)
Q Consensus 451 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 527 (605)
+.-|+..|...+....+.|.+.+...++.++ ..+.|+..|-. ...-+...++++.++.+|.+.++.+|+++..|...
T Consensus 103 ff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~ey 182 (435)
T COG5191 103 FFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWIEY 182 (435)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHHHH
Confidence 3445666666666666667777777777665 23456666643 34455678999999999999999999999988865
Q ss_pred HHH
Q 007400 528 SSI 530 (605)
Q Consensus 528 ~~~ 530 (605)
...
T Consensus 183 fr~ 185 (435)
T COG5191 183 FRM 185 (435)
T ss_pred HHH
Confidence 544
No 404
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=67.42 E-value=68 Score=26.22 Aligned_cols=77 Identities=12% Similarity=0.226 Sum_probs=49.6
Q ss_pred HHHHHHHHHccCChHHHHHHHhhcC---------CCCceeHHHHHHHHHhcCC-hHHHHHHHHHHHhCCCCCChhhHHHH
Q 007400 122 YNNMLSGYANLGMMKHARNLFDNMA---------ERDVVSWNTMIIGYAKSGA-VEEGLKFYKVLRRFSISCNEFSFAGI 191 (605)
Q Consensus 122 ~~~li~~~~~~~~~~~A~~~~~~~~---------~~~~~~~~~li~~~~~~~~-~~~a~~~~~~m~~~~~~p~~~~~~~l 191 (605)
.|.++...+..+++.....+++.+. ..+..+|.+++.+..+..- ---+..+|..|++.+.++++.-|..+
T Consensus 42 iN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~l 121 (145)
T PF13762_consen 42 INCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCL 121 (145)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 3444444444444444444444442 1355678888888766554 44567788888887888888888888
Q ss_pred HHHHhcc
Q 007400 192 LTICVKL 198 (605)
Q Consensus 192 l~~~~~~ 198 (605)
+.+|.+.
T Consensus 122 i~~~l~g 128 (145)
T PF13762_consen 122 IKAALRG 128 (145)
T ss_pred HHHHHcC
Confidence 8887764
No 405
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=67.38 E-value=51 Score=24.77 Aligned_cols=49 Identities=16% Similarity=0.103 Sum_probs=20.8
Q ss_pred HHHccCChHHHHHHHhhcCCCCceeHHHHHHHHHhcCChHHHHHHHHHHHh
Q 007400 128 GYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRR 178 (605)
Q Consensus 128 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 178 (605)
.+..+|++++|..+.+.+.-||...|-.|-. .+.|-.++...-+..|..
T Consensus 48 SLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla~ 96 (115)
T TIGR02508 48 SLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLAA 96 (115)
T ss_pred HHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHHh
Confidence 3444445555555444444444444433322 233333444444444433
No 406
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=66.76 E-value=35 Score=26.80 Aligned_cols=58 Identities=9% Similarity=0.191 Sum_probs=42.4
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHchHhhCCCCCHHHHHHHH
Q 007400 403 AIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLI 462 (605)
Q Consensus 403 a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~ 462 (605)
..+-+..+..-.+.|++......+++|.+.+++..|.++|+-+..+ ..+....|..++
T Consensus 68 vrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K--~g~~k~~Y~y~v 125 (149)
T KOG4077|consen 68 VRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK--CGAQKQVYPYYV 125 (149)
T ss_pred HHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh--cccHHHHHHHHH
Confidence 4455566666678899999999999999999999999999888733 333334455444
No 407
>PF14432 DYW_deaminase: DYW family of nucleic acid deaminases
Probab=66.75 E-value=4.7 Score=31.52 Aligned_cols=20 Identities=45% Similarity=0.896 Sum_probs=17.6
Q ss_pred ceeEEEECCEEEEEEeCCCCCcch
Q 007400 557 AISWIEIENKVHAFSVSDSLHPMR 580 (605)
Q Consensus 557 ~~s~~~~~~~~~~~~~~~~~~~~~ 580 (605)
++||.++ +.|+.||.+||+.
T Consensus 2 ~~~w~~~----h~F~sgd~shp~~ 21 (116)
T PF14432_consen 2 GCSWIEV----HSFVSGDRSHPQS 21 (116)
T ss_pred CCCccce----EEEEeCCCcCccH
Confidence 5788877 8999999999976
No 408
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=65.65 E-value=8.1 Score=30.59 Aligned_cols=31 Identities=16% Similarity=0.252 Sum_probs=25.2
Q ss_pred cCChhHHHHHHHHHHHcCCCCChhhHHHHHHHh
Q 007400 30 KGQLSEAISSLDLLAQRGIRLPAETLAFILQQC 62 (605)
Q Consensus 30 ~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~ 62 (605)
-|.-.+|..+|.+|++.|.+|| .|+.|+..+
T Consensus 108 ygsk~DaY~VF~kML~~G~pPd--dW~~Ll~~a 138 (140)
T PF11663_consen 108 YGSKTDAYAVFRKMLERGNPPD--DWDALLKEA 138 (140)
T ss_pred hccCCcHHHHHHHHHhCCCCCc--cHHHHHHHh
Confidence 4888899999999999997776 677777664
No 409
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=65.60 E-value=26 Score=30.51 Aligned_cols=35 Identities=11% Similarity=0.168 Sum_probs=19.9
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 007400 484 EHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNP 518 (605)
Q Consensus 484 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 518 (605)
.|++.++..++.++...|+.++|....+++....|
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 35555555555555555555555555555555555
No 410
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=64.64 E-value=45 Score=26.56 Aligned_cols=42 Identities=12% Similarity=0.109 Sum_probs=29.9
Q ss_pred HHHHHHHHHHhc--CCCCCchHHHHHHHHHhcCCchHHHHHHHH
Q 007400 505 MGRKVVDQLIDQ--NPQSSATHGLLSSIYSALGKGRLVEKVRQL 546 (605)
Q Consensus 505 ~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 546 (605)
.+.++|+.+... .-..+..|...+..+...|++.+|.++++.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 777777777765 344566777788888888888888888764
No 411
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=64.41 E-value=15 Score=36.20 Aligned_cols=91 Identities=7% Similarity=0.006 Sum_probs=41.4
Q ss_pred HhccCcHHHHHHHHHHchHhhCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHH
Q 007400 429 CTHSGLVQEGLTYFESMTHDLGIIPNQ-EHHACLIELLAQAGCSDQLMNQLEKM-PYEHD-SYLWNALHGVCRIHGNIDM 505 (605)
Q Consensus 429 ~~~~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~-~~~~~~l~~~~~~~g~~~~ 505 (605)
+...+.++.|..++.+++ .+.|+- ..|..=..++.+.+++..|+.-+.+. ...|. ...|..-+.+|...+.+.+
T Consensus 14 ~l~~~~fd~avdlysKaI---~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~~ 90 (476)
T KOG0376|consen 14 ALKDKVFDVAVDLYSKAI---ELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFKK 90 (476)
T ss_pred hcccchHHHHHHHHHHHH---hcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHHH
Confidence 344455555555555555 445542 22222224455555555554433332 22221 2233333444445555555
Q ss_pred HHHHHHHHHhcCCCCCc
Q 007400 506 GRKVVDQLIDQNPQSSA 522 (605)
Q Consensus 506 A~~~~~~~~~~~p~~~~ 522 (605)
|+..|++.....|+++.
T Consensus 91 A~~~l~~~~~l~Pnd~~ 107 (476)
T KOG0376|consen 91 ALLDLEKVKKLAPNDPD 107 (476)
T ss_pred HHHHHHHhhhcCcCcHH
Confidence 55555555555554433
No 412
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=64.37 E-value=1.1e+02 Score=28.41 Aligned_cols=86 Identities=14% Similarity=0.171 Sum_probs=56.1
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHchHhhCCCCCHHHHHHHHHHHHh----------cCChHH
Q 007400 404 IRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQ----------AGCSDQ 473 (605)
Q Consensus 404 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----------~g~~~~ 473 (605)
.++|+.|.+.++.|....|..+.-.+.+.=...+.+.+|+.+..+ ..-|..|+..|+. .|++.-
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD------~~rfd~Ll~iCcsmlil~Re~il~~DF~~ 336 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSD------PQRFDFLLYICCSMLILVRERILEGDFTV 336 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcC------hhhhHHHHHHHHHHHHHHHHHHHhcchHH
Confidence 467888888888888888887777777777788888888888732 2224444444332 577777
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHH
Q 007400 474 LMNQLEKMPYEHDSYLWNALHGV 496 (605)
Q Consensus 474 A~~~~~~~~~~~~~~~~~~l~~~ 496 (605)
-+++++..+ ..|.....+++..
T Consensus 337 nmkLLQ~yp-~tdi~~~l~~A~~ 358 (370)
T KOG4567|consen 337 NMKLLQNYP-TTDISKMLAVADS 358 (370)
T ss_pred HHHHHhcCC-CCCHHHHHHHHHH
Confidence 777777765 3444444333333
No 413
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=61.89 E-value=1.4e+02 Score=30.53 Aligned_cols=132 Identities=11% Similarity=0.091 Sum_probs=0.0
Q ss_pred HhccCcHHHHHHHHHHchHhh----------CCCCCHHHHHHHHHHHHhcCChHHHHHHHHhCC----------------
Q 007400 429 CTHSGLVQEGLTYFESMTHDL----------GIIPNQEHHACLIELLAQAGCSDQLMNQLEKMP---------------- 482 (605)
Q Consensus 429 ~~~~g~~~~a~~~~~~~~~~~----------~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---------------- 482 (605)
+.....+++|..-|......+ ..+-.+.+.-.+...+..+|+.+.|.+++++..
T Consensus 248 ~~hs~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg 327 (665)
T KOG2422|consen 248 FEHSNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSG 327 (665)
T ss_pred eecchHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccc
Q ss_pred -------CCCCHHHHHHH---HHHHHhcCCHHHHHHHHHHHHhcCCC-CCchHHHHHHHHH-hcCCchHHHHHHHHH-Hh
Q 007400 483 -------YEHDSYLWNAL---HGVCRIHGNIDMGRKVVDQLIDQNPQ-SSATHGLLSSIYS-ALGKGRLVEKVRQLI-NE 549 (605)
Q Consensus 483 -------~~~~~~~~~~l---~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~-~~g~~~~a~~~~~~~-~~ 549 (605)
..-|...|.++ +..+.+.|=+..|.+..+-+++++|. ||-....+++.|+ ++.+|.--+++++.. ..
T Consensus 328 ~cRL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~ 407 (665)
T KOG2422|consen 328 NCRLPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENM 407 (665)
T ss_pred cccCcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhh
Q ss_pred CCCcCCCceeE
Q 007400 550 RQFKKEQAISW 560 (605)
Q Consensus 550 ~~~~~~~~~s~ 560 (605)
+.+...|...+
T Consensus 408 n~l~~~PN~~y 418 (665)
T KOG2422|consen 408 NKLSQLPNFGY 418 (665)
T ss_pred ccHhhcCCchH
No 414
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=61.82 E-value=2.2e+02 Score=30.24 Aligned_cols=64 Identities=11% Similarity=-0.022 Sum_probs=39.7
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHhhhcCCh-------hHHHHHHHHHHHhCC
Q 007400 19 CLIQSFLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSL-------KLGKRVHLHLKLTQR 83 (605)
Q Consensus 19 ~~~~~~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~-------~~a~~~~~~~~~~~~ 83 (605)
.+|..+--++|.|.+++|.++....... .......+...+..+....+. ++...-|.+..+...
T Consensus 113 p~Wa~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~~~ 183 (613)
T PF04097_consen 113 PIWALIYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRNST 183 (613)
T ss_dssp EHHHHHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT-T
T ss_pred ccHHHHHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcCCC
Confidence 4455555567889999999999655543 456667888889988765332 244455555554443
No 415
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=59.12 E-value=2.5e+02 Score=29.93 Aligned_cols=118 Identities=14% Similarity=0.119 Sum_probs=56.0
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHhccCcHHHHHHHHHHchHhhCCCCCHHHHHHHHHHHHhcCCh
Q 007400 394 LTQHGYDEQAIRLFHDMVRSSVKPDKI--TLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCS 471 (605)
Q Consensus 394 ~~~~g~~~~a~~~~~~m~~~~~~p~~~--~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 471 (605)
+..-|+-++|-.+.++|.... .|-.. -...+..+|+..|+.....+++.-... ...-|+.-+..+.-.+.-..++
T Consensus 511 L~~ygrqe~Ad~lI~el~~dk-dpilR~~Gm~t~alAy~GTgnnkair~lLh~aVs--D~nDDVrRaAVialGFVl~~dp 587 (929)
T KOG2062|consen 511 LVVYGRQEDADPLIKELLRDK-DPILRYGGMYTLALAYVGTGNNKAIRRLLHVAVS--DVNDDVRRAAVIALGFVLFRDP 587 (929)
T ss_pred HHHhhhhhhhHHHHHHHhcCC-chhhhhhhHHHHHHHHhccCchhhHHHhhccccc--ccchHHHHHHHHHheeeEecCh
Confidence 444566666667777766542 22211 233445566666666655555555441 2223344444444445555555
Q ss_pred HHHHHHHHhCCCCCCHHH----HHHHHHHHHhcCCHHHHHHHHHHHHh
Q 007400 472 DQLMNQLEKMPYEHDSYL----WNALHGVCRIHGNIDMGRKVVDQLID 515 (605)
Q Consensus 472 ~~A~~~~~~~~~~~~~~~----~~~l~~~~~~~g~~~~A~~~~~~~~~ 515 (605)
+.....++-+....|+.+ -.+|+-+|+-.| ..+|..+++.+..
T Consensus 588 ~~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG-~~eAi~lLepl~~ 634 (929)
T KOG2062|consen 588 EQLPSTVSLLSESYNPHVRYGAAMALGIACAGTG-LKEAINLLEPLTS 634 (929)
T ss_pred hhchHHHHHHhhhcChhhhhhHHHHHhhhhcCCC-cHHHHHHHhhhhc
Confidence 555555544432222221 122333443333 3456666666554
No 416
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=58.94 E-value=53 Score=22.17 Aligned_cols=52 Identities=17% Similarity=0.156 Sum_probs=33.8
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHhh-----hcCChhHHHHH
Q 007400 23 SFLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCA-----ESKSLKLGKRV 74 (605)
Q Consensus 23 ~~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~-----~~~~~~~a~~~ 74 (605)
..+.+...|++-+|=++++.+-.....+....+..+|+.+. +.|+...|..+
T Consensus 5 ~~~~l~n~g~f~EaHEvlE~~W~~~~~~~~~~lqglIq~A~a~~h~~~gn~~gA~~l 61 (62)
T PF03745_consen 5 EGIELFNAGDFFEAHEVLEELWKAAPGPERDFLQGLIQLAVALYHLRRGNPRGARRL 61 (62)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHCCCT-CCHHHHHHHHHHHHHHHHHHHCTSHHHHHHH
T ss_pred HHHHHHcCCCHHHhHHHHHHHHHHCCcchHHHHHHHHHHHHHHHHHHhCCHHHHHHh
Confidence 34466778899999999998875443445666666766553 55777766654
No 417
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=58.69 E-value=42 Score=27.53 Aligned_cols=64 Identities=13% Similarity=0.174 Sum_probs=44.6
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHHhhhcCChhHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCC
Q 007400 38 SSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGS 103 (605)
Q Consensus 38 ~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 103 (605)
++.+.+.+.|.+++.. -..++..+...++.-.|.++|+.+.+.++......+|+. +..+...|-
T Consensus 7 ~~~~~lk~~glr~T~q-R~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~-L~~l~e~Gl 70 (145)
T COG0735 7 DAIERLKEAGLRLTPQ-RLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRT-LKLLEEAGL 70 (145)
T ss_pred HHHHHHHHcCCCcCHH-HHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHH-HHHHHHCCC
Confidence 4455667788777654 456777777777778899999999988877655546754 344555553
No 418
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=58.27 E-value=1.5e+02 Score=27.05 Aligned_cols=194 Identities=11% Similarity=0.036 Sum_probs=120.6
Q ss_pred CCCCChhHHHHHHHH-HHhcCChHHHHHHHhhcCCC-------CcchHHHHHHHHHhcCChHHHHHHHhhCCC-------
Q 007400 215 GFLSNVVISSSIVDA-YAKCGELSDARRLFDETDAR-------DVLTWTTMVSGYAKLGDMESASKLFNEMPE------- 279 (605)
Q Consensus 215 ~~~~~~~~~~~l~~~-~~~~g~~~~a~~~~~~~~~~-------~~~~~~~li~~~~~~~~~~~A~~~~~~~~~------- 279 (605)
+-.||+..-|..-.. -.+..+.++|+.-|++..+- ...+...++....+.+++++....+.++..
T Consensus 21 ~sEpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVT 100 (440)
T KOG1464|consen 21 NSEPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVT 100 (440)
T ss_pred CCCCCcchHhhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHh
Confidence 445666544432211 12345788999988887643 334566788889999999999998888752
Q ss_pred C--ChhhHHHHHHHHHhCCChHHHHHHHHHHHH----C-CCCCChHHHHHHHHHHhcccchHHHHHHHHHHHHcCCCC--
Q 007400 280 K--NPVSWTTLIAGYTRNGLGQKALELFTRMMI----L-RIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRS-- 350 (605)
Q Consensus 280 ~--~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~----~-g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-- 350 (605)
+ +..+.|+++..-..+.+.+.-.+.|+.-++ . +-+.=..|-+.+...+...+.+.....+++++..+.-..
T Consensus 101 rNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edG 180 (440)
T KOG1464|consen 101 RNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDG 180 (440)
T ss_pred ccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccC
Confidence 1 445677777776666666666666654332 1 111122344567777888889999999998887542111
Q ss_pred ---------ChhHHHHHHHHHHhcCChHHHHHHHHhcC-CC---CCcchHHHHH----HHHHHcCCHHHHHHHHH
Q 007400 351 ---------NTIVMSSLIDMYSKCGCLNDGRQVFDLTD-NK---ENSMLWNTMI----SALTQHGYDEQAIRLFH 408 (605)
Q Consensus 351 ---------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~---~~~~~~~~l~----~~~~~~g~~~~a~~~~~ 408 (605)
-..+|..=|.+|....+-..-..+|+... .+ |.+.....+- ..+.+.|++++|..-|-
T Consensus 181 edD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFF 255 (440)
T KOG1464|consen 181 EDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFF 255 (440)
T ss_pred chhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHH
Confidence 13456667788888888777777777533 12 3444333322 23566788888765433
No 419
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=58.13 E-value=1.8e+02 Score=28.66 Aligned_cols=56 Identities=5% Similarity=-0.021 Sum_probs=36.9
Q ss_pred HHHHhCCChHHHHHHHHHHHHCCCCCChH--HHHHHHHHHh--cccchHHHHHHHHHHHHc
Q 007400 290 AGYTRNGLGQKALELFTRMMILRIRPNQH--TFSSCLCACA--SIVSLKHGKQVHGFLIRT 346 (605)
Q Consensus 290 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~--~~~~ll~~~~--~~~~~~~a~~~~~~~~~~ 346 (605)
..+.+.+++..|.++|+.+... ++++.. .+..+..+|. ..-++.+|.+.++.....
T Consensus 139 ~~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 139 KELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 3455788999999999998876 555544 3334444443 345677777777776654
No 420
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=57.80 E-value=2.6e+02 Score=29.77 Aligned_cols=166 Identities=13% Similarity=0.054 Sum_probs=101.2
Q ss_pred HHhccCcHHHHHHHHHHchHhhCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCCH
Q 007400 428 ACTHSGLVQEGLTYFESMTHDLGIIPN--QEHHACLIELLAQAGCSDQLMNQLEKMPYEH--DSYLWNALHGVCRIHGNI 503 (605)
Q Consensus 428 ~~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~ 503 (605)
++..-|+.++|..+.+++..+. .|- ..-...+.-+|+-.|+.....+++--....+ |+.-...++-++.-..+.
T Consensus 510 aL~~ygrqe~Ad~lI~el~~dk--dpilR~~Gm~t~alAy~GTgnnkair~lLh~aVsD~nDDVrRaAVialGFVl~~dp 587 (929)
T KOG2062|consen 510 ALVVYGRQEDADPLIKELLRDK--DPILRYGGMYTLALAYVGTGNNKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDP 587 (929)
T ss_pred HHHHhhhhhhhHHHHHHHhcCC--chhhhhhhHHHHHHHHhccCchhhHHHhhcccccccchHHHHHHHHHheeeEecCh
Confidence 4556677889999999998432 332 2223455667888888777777776543333 444444455566677888
Q ss_pred HHHHHHHHHHHhc-CCC-CCchHHHHHHHHHhcCCchHHHHHHHHHHhCCCcCCCceeEEEECCEEEEEEeCCCCCcchH
Q 007400 504 DMGRKVVDQLIDQ-NPQ-SSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRD 581 (605)
Q Consensus 504 ~~A~~~~~~~~~~-~p~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~ 581 (605)
+....+.+-+.+. +|. ...+-..|+-+|...|+ .+|+.+++.|...-+......- .+.-.+-.....+...|+..
T Consensus 588 ~~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~-~eAi~lLepl~~D~~~fVRQgA--lIa~amIm~Q~t~~~~pkv~ 664 (929)
T KOG2062|consen 588 EQLPSTVSLLSESYNPHVRYGAAMALGIACAGTGL-KEAINLLEPLTSDPVDFVRQGA--LIALAMIMIQQTEQLCPKVN 664 (929)
T ss_pred hhchHHHHHHhhhcChhhhhhHHHHHhhhhcCCCc-HHHHHHHhhhhcChHHHHHHHH--HHHHHHHHHhcccccCchHH
Confidence 8888888777665 452 12445577888877776 6788888888653221111000 00001112223456789999
Q ss_pred HHHHHHHHHHHHHhhCC
Q 007400 582 VLYSVLEQLAGQMGEDA 598 (605)
Q Consensus 582 ~~~~~l~~~~~~~~~~~ 598 (605)
.+...++++...-.++|
T Consensus 665 ~frk~l~kvI~dKhEd~ 681 (929)
T KOG2062|consen 665 GFRKQLEKVINDKHEDG 681 (929)
T ss_pred HHHHHHHHHhhhhhhHH
Confidence 99888888876655553
No 421
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=57.54 E-value=43 Score=29.07 Aligned_cols=51 Identities=16% Similarity=-0.002 Sum_probs=32.9
Q ss_pred ccCcHHHHHHHHHHchHhhCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhC
Q 007400 431 HSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKM 481 (605)
Q Consensus 431 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 481 (605)
...+.+......+.+.+.....|++.++..++.++...|+.++|.+..+++
T Consensus 120 ~~~~~~~l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~ 170 (193)
T PF11846_consen 120 LPPDPEMLEAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARA 170 (193)
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 445544444444444433356677777777777777777777777777765
No 422
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=56.95 E-value=1.4e+02 Score=26.39 Aligned_cols=124 Identities=18% Similarity=0.157 Sum_probs=72.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHchHhhCCCCC----HHHHHHH
Q 007400 387 WNTMISALTQHGYDEQAIRLFHDMVRSSVKP-DKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPN----QEHHACL 461 (605)
Q Consensus 387 ~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l 461 (605)
.+.-++.+.+.+...+++...+.-++. +| |..+-..++..++-.|++++|..-++..- .+.|+ ..+|..+
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVka--kPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a---~l~p~~t~~a~lyr~l 78 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKA--KPTDAGGRHFLFQLLCVAGDWEKALAQLNLAA---TLSPQDTVGASLYRHL 78 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhc--CCccccchhHHHHHHhhcchHHHHHHHHHHHh---hcCcccchHHHHHHHH
Confidence 344556677778888888888877774 45 44566777778888888888887777665 33443 4455555
Q ss_pred HHHHHhcCChHHHH-HHHHhC--C---CCCCHHHHHHHHHHHH--hcCCHHHHHHHHHHHHhcCCCCCc
Q 007400 462 IELLAQAGCSDQLM-NQLEKM--P---YEHDSYLWNALHGVCR--IHGNIDMGRKVVDQLIDQNPQSSA 522 (605)
Q Consensus 462 ~~~~~~~g~~~~A~-~~~~~~--~---~~~~~~~~~~l~~~~~--~~g~~~~A~~~~~~~~~~~p~~~~ 522 (605)
+.+ +.+. ++|..- + ..|.+.-...+..+.. .-|.-+.+..+-+++++..|....
T Consensus 79 ir~-------ea~R~evfag~~~Pgflg~p~p~wva~L~aala~h~dg~gea~~alreqal~aa~~~iG 140 (273)
T COG4455 79 IRC-------EAARNEVFAGGAVPGFLGGPSPEWVAALLAALALHSDGAGEARTALREQALKAAPVPIG 140 (273)
T ss_pred HHH-------HHHHHHHhccCCCCCCcCCCCHHHHHHHHHHHhcccCCcchHHHHHHHHHHhhCCCCCc
Confidence 543 2222 233321 1 1133332333443333 233455566677778887775443
No 423
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=56.93 E-value=86 Score=23.95 Aligned_cols=92 Identities=10% Similarity=0.084 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCChhHHHHHhccCCCCCchHHHHHHHHHHccCChHHHHHHHhhcCC
Q 007400 68 LKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAE 147 (605)
Q Consensus 68 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~ 147 (605)
.++|..+.+.+...+. .... +.-+.+..+.+.|++++|+..=.....||...|-++-.. +.|--+++...+.++..
T Consensus 22 H~EA~tIa~wL~~~~~-~~E~-v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a~--klGL~~~~e~~l~rla~ 97 (116)
T PF09477_consen 22 HQEANTIADWLEQEGE-MEEV-VALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALCAW--KLGLASALESRLTRLAS 97 (116)
T ss_dssp HHHHHHHHHHHHHTTT-THHH-HHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHHHH--HCT-HHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHhCCc-HHHH-HHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHHHH--hhccHHHHHHHHHHHHh
Q ss_pred CCceeHHHHHHHHHhc
Q 007400 148 RDVVSWNTMIIGYAKS 163 (605)
Q Consensus 148 ~~~~~~~~li~~~~~~ 163 (605)
.+......+..++...
T Consensus 98 ~g~~~~q~Fa~~~~~~ 113 (116)
T PF09477_consen 98 SGSPELQAFAAGFREQ 113 (116)
T ss_dssp -SSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
No 424
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=55.77 E-value=23 Score=31.25 Aligned_cols=56 Identities=13% Similarity=0.223 Sum_probs=32.5
Q ss_pred HhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 007400 466 AQAGCSDQLMNQLEKMP--YEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSS 521 (605)
Q Consensus 466 ~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 521 (605)
.+.|+.+.|.+++.+.. .+.....|..+...-.+.|+++.|.+.|++.++++|++.
T Consensus 6 ~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~ 63 (287)
T COG4976 6 AESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDH 63 (287)
T ss_pred cccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccc
Confidence 34555555555555541 223445566666666666677777777777766666543
No 425
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=54.75 E-value=73 Score=25.13 Aligned_cols=47 Identities=13% Similarity=0.147 Sum_probs=33.1
Q ss_pred HHHHHHHHHHcCCCCChhhHHHHHHHhhhcCChhHHHHHHHHHHHhC
Q 007400 36 AISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQ 82 (605)
Q Consensus 36 a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 82 (605)
....+..+...++-|++.....-+++|.+-.|+..|.++++.++..-
T Consensus 68 vrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K~ 114 (149)
T KOG4077|consen 68 VRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDKC 114 (149)
T ss_pred HHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhc
Confidence 33444445556677888888888888888888888888887776554
No 426
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=54.70 E-value=90 Score=28.85 Aligned_cols=69 Identities=10% Similarity=0.114 Sum_probs=47.8
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhcccchHHHHHHHHHHH-----HcCCCCChhH
Q 007400 285 WTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLI-----RTNFRSNTIV 354 (605)
Q Consensus 285 ~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~-----~~~~~~~~~~ 354 (605)
++.....|..+|.+.+|.++-++.+... +.+...+..++..+...|+--.+..-++.+. +.|+..+..+
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vddsi 355 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDDSI 355 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcchhH
Confidence 4455667888888888888888887754 5566777788888888888666666665553 2455544443
No 427
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=53.72 E-value=1.2e+02 Score=24.76 Aligned_cols=82 Identities=10% Similarity=-0.057 Sum_probs=64.5
Q ss_pred eHHHHHHHHHhcCChHHHHHHHHHHHhCC-----CCCChhhHHHHHHHHhccCC-hHHHHHHHHHHHHhCCCCChhHHHH
Q 007400 152 SWNTMIIGYAKSGAVEEGLKFYKVLRRFS-----ISCNEFSFAGILTICVKLEE-LKLTRQVHGQVLVTGFLSNVVISSS 225 (605)
Q Consensus 152 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~-----~~p~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~ 225 (605)
..|+++......+++...+.+++.+..-. -..+...|++++++.++..- --.+..+|..+.+.+.+++..-|..
T Consensus 41 fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~ 120 (145)
T PF13762_consen 41 FINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSC 120 (145)
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 46778888888899999999998885311 12466789999999977666 4567788888888888999999999
Q ss_pred HHHHHHhc
Q 007400 226 IVDAYAKC 233 (605)
Q Consensus 226 l~~~~~~~ 233 (605)
++.++.+.
T Consensus 121 li~~~l~g 128 (145)
T PF13762_consen 121 LIKAALRG 128 (145)
T ss_pred HHHHHHcC
Confidence 99988765
No 428
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=53.67 E-value=23 Score=34.92 Aligned_cols=102 Identities=11% Similarity=0.011 Sum_probs=70.1
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHH-HHHHhccCcHHHHHHHHHHchHhhCCCCC-HHHHHHHHHHHHhc
Q 007400 391 ISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVI-LNACTHSGLVQEGLTYFESMTHDLGIIPN-QEHHACLIELLAQA 468 (605)
Q Consensus 391 ~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l-~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~ 468 (605)
+..+...+.++.|..++.+.++ +.||...|... ..++.+.+++..|+.=...++ ...|+ ...|..=..++.+.
T Consensus 11 an~~l~~~~fd~avdlysKaI~--ldpnca~~~anRa~a~lK~e~~~~Al~Da~kai---e~dP~~~K~Y~rrg~a~m~l 85 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAIE--LDPNCAIYFANRALAHLKVESFGGALHDALKAI---ELDPTYIKAYVRRGTAVMAL 85 (476)
T ss_pred HhhhcccchHHHHHHHHHHHHh--cCCcceeeechhhhhheeechhhhHHHHHHhhh---hcCchhhheeeeccHHHHhH
Confidence 4456677899999999999999 78887654443 478889999999988887777 44565 33444444455566
Q ss_pred CChHHHHHHHHhCC-CCCCHHHHHHHHHHH
Q 007400 469 GCSDQLMNQLEKMP-YEHDSYLWNALHGVC 497 (605)
Q Consensus 469 g~~~~A~~~~~~~~-~~~~~~~~~~l~~~~ 497 (605)
+++.+|...|+... ..|+..-....+.-|
T Consensus 86 ~~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec 115 (476)
T KOG0376|consen 86 GEFKKALLDLEKVKKLAPNDPDATRKIDEC 115 (476)
T ss_pred HHHHHHHHHHHHhhhcCcCcHHHHHHHHHH
Confidence 67778888887753 456555444444443
No 429
>PF13934 ELYS: Nuclear pore complex assembly
Probab=53.21 E-value=1.7e+02 Score=26.24 Aligned_cols=11 Identities=27% Similarity=0.462 Sum_probs=4.3
Q ss_pred cCCHHHHHHHH
Q 007400 397 HGYDEQAIRLF 407 (605)
Q Consensus 397 ~g~~~~a~~~~ 407 (605)
.|+.+.|+.++
T Consensus 121 ~~~~~lAL~y~ 131 (226)
T PF13934_consen 121 RGDPKLALRYL 131 (226)
T ss_pred CCChhHHHHHH
Confidence 34444333333
No 430
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=53.11 E-value=2e+02 Score=26.93 Aligned_cols=144 Identities=8% Similarity=0.030 Sum_probs=68.7
Q ss_pred hHHHHHHHHhcCCCCCcchHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc-----C--cHH
Q 007400 368 LNDGRQVFDLTDNKENSMLWNTMISALTQ----HGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHS-----G--LVQ 436 (605)
Q Consensus 368 ~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~-----g--~~~ 436 (605)
...|...|..............|...|.. ..+..+|..+|++..+.|..+...+...+...|... - +..
T Consensus 93 ~~~A~~~~~~~a~~g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~ 172 (292)
T COG0790 93 KTKAADWYRCAAADGLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDK 172 (292)
T ss_pred HHHHHHHHHHHhhcccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHH
Confidence 44455555544433333344444444433 236667777777777766443222233333333332 1 223
Q ss_pred HHHHHHHHchHhhCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-----------
Q 007400 437 EGLTYFESMTHDLGIIPNQEHHACLIELLAQ----AGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHG----------- 501 (605)
Q Consensus 437 ~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g----------- 501 (605)
.|...|.++. ..+ +......|...|.. ..++.+|...|.+....-+......+. .+...|
T Consensus 173 ~A~~~~~~aa-~~~---~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~~~a~~~~~-~~~~~g~g~~~~~~~~~ 247 (292)
T COG0790 173 KALYLYRKAA-ELG---NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGDGAACYNLG-LMYLNGEGVKKAAFLTA 247 (292)
T ss_pred hHHHHHHHHH-Hhc---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHH-HHHhcCCCchhhhhccc
Confidence 5666676665 223 33344444444433 236677777777653223333333333 334333
Q ss_pred ----CHHHHHHHHHHHHhc
Q 007400 502 ----NIDMGRKVVDQLIDQ 516 (605)
Q Consensus 502 ----~~~~A~~~~~~~~~~ 516 (605)
+...|...+..+...
T Consensus 248 ~~~~~~~~a~~~~~~~~~~ 266 (292)
T COG0790 248 AKEEDKKQALEWLQKACEL 266 (292)
T ss_pred ccCCCHHHHHHHHHHHHHc
Confidence 555555555555554
No 431
>PF13934 ELYS: Nuclear pore complex assembly
Probab=51.08 E-value=1.8e+02 Score=26.02 Aligned_cols=105 Identities=20% Similarity=0.195 Sum_probs=57.0
Q ss_pred hHHHHHHHHHH--cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHchHhhCCCCCHHHHHHHHH
Q 007400 386 LWNTMISALTQ--HGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIE 463 (605)
Q Consensus 386 ~~~~l~~~~~~--~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 463 (605)
.|..+++++.. ++++++|.+.+-.- .+.|+.. ..++.++...|+.+.|..+++... ....+......+..
T Consensus 78 ~~~~~~~g~W~LD~~~~~~A~~~L~~p---s~~~~~~--~~Il~~L~~~~~~~lAL~y~~~~~---p~l~s~~~~~~~~~ 149 (226)
T PF13934_consen 78 KYIKFIQGFWLLDHGDFEEALELLSHP---SLIPWFP--DKILQALLRRGDPKLALRYLRAVG---PPLSSPEALTLYFV 149 (226)
T ss_pred HHHHHHHHHHHhChHhHHHHHHHhCCC---CCCcccH--HHHHHHHHHCCChhHHHHHHHhcC---CCCCCHHHHHHHHH
Confidence 35555666543 45666666665211 1222222 235566666788888888887664 22223333333333
Q ss_pred HHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 007400 464 LLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRI 499 (605)
Q Consensus 464 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~ 499 (605)
. ..+|.+.+|..+-+....+-....+..++..+..
T Consensus 150 ~-La~~~v~EAf~~~R~~~~~~~~~l~e~l~~~~~~ 184 (226)
T PF13934_consen 150 A-LANGLVTEAFSFQRSYPDELRRRLFEQLLEHCLE 184 (226)
T ss_pred H-HHcCCHHHHHHHHHhCchhhhHHHHHHHHHHHHH
Confidence 3 5667888888877776532223455555555543
No 432
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=50.79 E-value=1e+02 Score=22.89 Aligned_cols=64 Identities=16% Similarity=0.067 Sum_probs=37.6
Q ss_pred HHHHhcCChhHHHHHHHHHH----HcCCCCC----hhhHHHHHHHhhhcCChhHHHHHHHHHHHhCCCCCch
Q 007400 25 LSLISKGQLSEAISSLDLLA----QRGIRLP----AETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTT 88 (605)
Q Consensus 25 ~~~~~~g~~~~a~~~~~~~~----~~g~~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 88 (605)
+...+.|++..|.+.+.+.- ..+.... ..+...+.......|++++|.+.++..+.......+.
T Consensus 6 ~~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~~D~ 77 (94)
T PF12862_consen 6 LNALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARENGDR 77 (94)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHCCH
Confidence 34567899999976666553 3322221 1222333444556788888888888877655444443
No 433
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=50.69 E-value=1.9e+02 Score=29.52 Aligned_cols=24 Identities=17% Similarity=0.401 Sum_probs=19.1
Q ss_pred HHHHHHHHhcCChHHHHHHHHhcC
Q 007400 356 SSLIDMYSKCGCLNDGRQVFDLTD 379 (605)
Q Consensus 356 ~~l~~~~~~~g~~~~A~~~~~~~~ 379 (605)
..++.-|.+.+++++|..++..|.
T Consensus 412 ~eL~~~yl~~~qi~eAi~lL~smn 435 (545)
T PF11768_consen 412 VELISQYLRCDQIEEAINLLLSMN 435 (545)
T ss_pred HHHHHHHHhcCCHHHHHHHHHhCC
Confidence 356778888888888888888776
No 434
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=50.26 E-value=54 Score=23.84 Aligned_cols=32 Identities=9% Similarity=0.326 Sum_probs=14.9
Q ss_pred ChHHHHHHHhhCCCCChhhHHHHHHHHHhCCC
Q 007400 266 DMESASKLFNEMPEKNPVSWTTLIAGYTRNGL 297 (605)
Q Consensus 266 ~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~ 297 (605)
+.+++.++++.+..+.+.+|..+..++...|+
T Consensus 45 r~~q~~~LLd~L~~RG~~AF~~F~~aL~~~~~ 76 (84)
T cd08326 45 RRDQARQLLIDLETRGKQAFPAFLSALRETGQ 76 (84)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCc
Confidence 34444444444444444444444444444443
No 435
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=50.25 E-value=3.9e+02 Score=29.54 Aligned_cols=72 Identities=13% Similarity=0.141 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHchHhhCCCCCHHHHHHHHHHHHhcCCh
Q 007400 400 DEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCS 471 (605)
Q Consensus 400 ~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 471 (605)
.+.-.+.|.++..---.-|..++..-..-+...|++..|..++.++.++.+-.++.+.+..++..+...|.-
T Consensus 1212 ld~~~e~y~el~kw~d~~dsK~~~~a~~ha~~~~~yGr~lK~l~kliee~~es~t~~~~~~~~el~~~Lgw~ 1283 (1304)
T KOG1114|consen 1212 LDSYNENYQELLKWLDASDSKVWQIAKKHAKALGQYGRALKALLKLIEENGESATKDVAVLLAELLENLGWN 1283 (1304)
T ss_pred hhhHHHHHHHHHHHhhcCCchheehhHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhCch
Confidence 344455555555431122444555555555667888888888888887777788888887777777776654
No 436
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=50.18 E-value=1.1e+02 Score=23.62 Aligned_cols=42 Identities=12% Similarity=0.044 Sum_probs=27.5
Q ss_pred HHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHH
Q 007400 505 MGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQL 546 (605)
Q Consensus 505 ~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 546 (605)
.+++.|.+...+.|+.+..+..+++-+....-|.++..--++
T Consensus 62 ~sve~~s~a~~Lsp~~A~~L~~la~~l~s~~~Ykk~v~kak~ 103 (111)
T PF04781_consen 62 GSVECFSRAVELSPDSAHSLFELASQLGSVKYYKKAVKKAKR 103 (111)
T ss_pred HhHHHHHHHhccChhHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 356777888888887766666666666555555555555443
No 437
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=50.00 E-value=2e+02 Score=26.02 Aligned_cols=63 Identities=5% Similarity=-0.017 Sum_probs=50.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 007400 457 HHACLIELLAQAGCSDQLMNQLEKMP--YEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQ 519 (605)
Q Consensus 457 ~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 519 (605)
.+..+..++...|++-++++...+.. .+.++.+|..-+.+.+..-+.++|..-|.++++++|.
T Consensus 232 LllNy~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldps 296 (329)
T KOG0545|consen 232 LLLNYCQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPS 296 (329)
T ss_pred HHHhHHHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChh
Confidence 45556677788888888888777652 3457778888888888888999999999999999994
No 438
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=49.98 E-value=1.1e+02 Score=32.99 Aligned_cols=159 Identities=13% Similarity=0.038 Sum_probs=92.7
Q ss_pred HHHHHHHhcCChHHHHHHHHhcCCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHH
Q 007400 357 SLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQ 436 (605)
Q Consensus 357 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~ 436 (605)
++|..+.+.|..+-|+...+. ..+-. ..+...|+.+.|++.-.++ -+..+|..|.......|+.+
T Consensus 625 aiIaYLqKkgypeiAL~FVkD------~~tRF---~LaLe~gnle~ale~akkl------dd~d~w~rLge~Al~qgn~~ 689 (1202)
T KOG0292|consen 625 AIIAYLQKKGYPEIALHFVKD------ERTRF---ELALECGNLEVALEAAKKL------DDKDVWERLGEEALRQGNHQ 689 (1202)
T ss_pred HHHHHHHhcCCcceeeeeecC------cchhe---eeehhcCCHHHHHHHHHhc------CcHHHHHHHHHHHHHhcchH
Confidence 445555666666666655442 22211 2234557778777665432 25667888888888888888
Q ss_pred HHHHHHHHchHhhCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 007400 437 EGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQ 516 (605)
Q Consensus 437 ~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 516 (605)
-|+-.|++.. .|..|.-.|.-.|+.++-.++.+....+.|......- + .-.|+.++-..+++..=.
T Consensus 690 IaEm~yQ~~k----------nfekLsfLYliTgn~eKL~Km~~iae~r~D~~~~~qn--a-lYl~dv~ervkIl~n~g~- 755 (1202)
T KOG0292|consen 690 IAEMCYQRTK----------NFEKLSFLYLITGNLEKLSKMMKIAEIRNDATGQFQN--A-LYLGDVKERVKILENGGQ- 755 (1202)
T ss_pred HHHHHHHHhh----------hhhheeEEEEEeCCHHHHHHHHHHHHhhhhhHHHHHH--H-HHhccHHHHHHHHHhcCc-
Confidence 8888888765 3455556677778888777777666544554433211 1 113666666655554321
Q ss_pred CCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 007400 517 NPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQ 551 (605)
Q Consensus 517 ~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 551 (605)
-+-+|. .-...|.-++|.++.++...++
T Consensus 756 ---~~layl----ta~~~G~~~~ae~l~ee~~~~~ 783 (1202)
T KOG0292|consen 756 ---LPLAYL----TAAAHGLEDQAEKLGEELEKQV 783 (1202)
T ss_pred ---ccHHHH----HHhhcCcHHHHHHHHHhhcccc
Confidence 112221 1223477778888877776544
No 439
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=49.92 E-value=1.8e+02 Score=25.43 Aligned_cols=28 Identities=18% Similarity=0.267 Sum_probs=20.4
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 007400 386 LWNTMISALTQHGYDEQAIRLFHDMVRS 413 (605)
Q Consensus 386 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 413 (605)
..+.++..+...|+++.|-+.|.-+++.
T Consensus 43 ~L~~lLh~~llr~d~~rA~Raf~lLiR~ 70 (199)
T PF04090_consen 43 VLTDLLHLCLLRGDWDRAYRAFGLLIRC 70 (199)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHcC
Confidence 4566677777778888888887777764
No 440
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=49.87 E-value=64 Score=20.35 Aligned_cols=33 Identities=15% Similarity=0.171 Sum_probs=18.0
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCChhhHHHHHH
Q 007400 161 AKSGAVEEGLKFYKVLRRFSISCNEFSFAGILT 193 (605)
Q Consensus 161 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~ 193 (605)
.+.|-..++..+++.|.+.|+..+...|..+++
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 344555555666666666565555555554443
No 441
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=49.68 E-value=32 Score=25.02 Aligned_cols=33 Identities=15% Similarity=0.250 Sum_probs=17.7
Q ss_pred cCChhHHHHHhccCCCCCchHHHHHHHHHHccC
Q 007400 101 CGSDVDARKVFDKIPVKNLFSYNNMLSGYANLG 133 (605)
Q Consensus 101 ~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~ 133 (605)
..+.+.+.++++.++.+++.+|..+.+++...|
T Consensus 43 ~tr~~q~~~LLd~L~~RG~~AF~~F~~aL~~~~ 75 (84)
T cd08326 43 GSRRDQARQLLIDLETRGKQAFPAFLSALRETG 75 (84)
T ss_pred CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 344555555555555555555555555555444
No 442
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=49.64 E-value=1.3e+02 Score=23.67 Aligned_cols=59 Identities=14% Similarity=0.081 Sum_probs=29.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH-------hcCCCCCchHH----HHHHHHHhcCCchHHHHHHHHH
Q 007400 489 LWNALHGVCRIHGNIDMGRKVVDQLI-------DQNPQSSATHG----LLSSIYSALGKGRLVEKVRQLI 547 (605)
Q Consensus 489 ~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~~p~~~~~~~----~l~~~~~~~g~~~~a~~~~~~~ 547 (605)
.+..|..++...|++++++.-.++++ ++..+....|+ .-+.++...|+.++|...|+..
T Consensus 57 chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~a 126 (144)
T PF12968_consen 57 CHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMA 126 (144)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHH
Confidence 33444555555555555544444444 23333333333 3455666677777777777654
No 443
>PRK14700 recombination factor protein RarA; Provisional
Probab=49.56 E-value=2e+02 Score=26.92 Aligned_cols=64 Identities=8% Similarity=0.029 Sum_probs=44.1
Q ss_pred HHHHHHHHHh---CCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhcccch-----HHHHHHHHHHHHcCC
Q 007400 285 WTTLIAGYTR---NGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSL-----KHGKQVHGFLIRTNF 348 (605)
Q Consensus 285 ~~~l~~~~~~---~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~-----~~a~~~~~~~~~~~~ 348 (605)
+-.+++++.+ -.+++.|+-++.+|++.|-.|....-..++.+.-..|.- ..|...++.....|.
T Consensus 126 HYd~iSAf~KSiRGSDpDAAlYyLArml~~GEDp~~IaRRLii~AsEDIGlAdP~al~~a~aa~~A~~~iG~ 197 (300)
T PRK14700 126 FYEQLSAFHKSVRGTDPDAAIFWLSVMLDNGVDPLVIARRMLCIASEDIGNADPQALRVAMDAWNAYEKLGM 197 (300)
T ss_pred hHHHHHHHHHHhhcCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCC
Confidence 3345666654 478999999999999999888888888888777766632 233344444444443
No 444
>PF08967 DUF1884: Domain of unknown function (DUF1884); InterPro: IPR014418 This group represents an uncharacterised conserved protein.; PDB: 2PK8_A.
Probab=49.49 E-value=19 Score=25.46 Aligned_cols=24 Identities=17% Similarity=0.147 Sum_probs=17.4
Q ss_pred chHHHHHHHHHHHHHHhhCCCCCC
Q 007400 579 MRDVLYSVLEQLAGQMGEDAPSLD 602 (605)
Q Consensus 579 ~~~~~~~~l~~~~~~~~~~~~~~~ 602 (605)
...++.+.+++....++.+|+.||
T Consensus 6 ~li~il~~ie~~inELk~dG~ePD 29 (85)
T PF08967_consen 6 DLIRILELIEEKINELKEDGFEPD 29 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHTT----
T ss_pred hHHHHHHHHHHHHHHHHhcCCCCC
Confidence 456778899999999999999998
No 445
>PF05119 Terminase_4: Phage terminase, small subunit; InterPro: IPR006448 This entry is represented by Streptococcus phage 7201, Orf21. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This group of sequences describe the distinct family of phage (and integrated prophage) putative terminase small subunit sequnces. Members tend to be encoded by the gene adjacent to the phage terminase large subunit gene.
Probab=48.46 E-value=51 Score=24.74 Aligned_cols=31 Identities=13% Similarity=0.160 Sum_probs=27.5
Q ss_pred CCCCcchHHHHHHHHHHHHHHhhCCCCCCCC
Q 007400 574 DSLHPMRDVLYSVLEQLAGQMGEDAPSLDAD 604 (605)
Q Consensus 574 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 604 (605)
...||..........++.+...+.|.+|.++
T Consensus 57 ~~~nP~~~~~~~~~~~~~~l~~~lGLtP~sR 87 (100)
T PF05119_consen 57 PKKNPAVSILNKAMKQMRSLASELGLTPASR 87 (100)
T ss_pred cccCHHHHHHHHHHHHHHHHHHHcCCCHHHH
Confidence 3579999999999999999999999999864
No 446
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=48.15 E-value=1.3e+02 Score=23.88 Aligned_cols=80 Identities=13% Similarity=0.090 Sum_probs=50.1
Q ss_pred CChhHHHHHHHHHHHcC-----CCCChhhHHHHHHHhhhcCChhHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCChh
Q 007400 31 GQLSEAISSLDLLAQRG-----IRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDV 105 (605)
Q Consensus 31 g~~~~a~~~~~~~~~~g-----~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 105 (605)
+.-.....++++..+.= ..-|..-+...+. |+. ..+.+.++|..|...+........|......+...|+++
T Consensus 40 ~~~~~L~~lLer~~~~f~~~~~Y~nD~RylkiWi~-ya~--~~~~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~ 116 (126)
T PF08311_consen 40 GKQSGLLELLERCIRKFKDDERYKNDERYLKIWIK-YAD--LSSDPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFK 116 (126)
T ss_dssp CCCHHHHHHHHHHHHHHTTSGGGTT-HHHHHHHHH-HHT--TBSHHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HH
T ss_pred CchhHHHHHHHHHHHHHhhhHhhcCCHHHHHHHHH-HHH--HccCHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHH
Confidence 45555566666654321 1122332222222 222 233788899999988887777768888888888899999
Q ss_pred HHHHHhcc
Q 007400 106 DARKVFDK 113 (605)
Q Consensus 106 ~a~~~~~~ 113 (605)
+|.++|+.
T Consensus 117 ~A~~I~~~ 124 (126)
T PF08311_consen 117 KADEIYQL 124 (126)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 99888753
No 447
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=48.01 E-value=1.3e+02 Score=23.22 Aligned_cols=27 Identities=19% Similarity=0.327 Sum_probs=22.1
Q ss_pred eHHHHHHHHHhcCChHHHHHHHHHHHh
Q 007400 152 SWNTMIIGYAKSGAVEEGLKFYKVLRR 178 (605)
Q Consensus 152 ~~~~li~~~~~~~~~~~a~~~~~~m~~ 178 (605)
-|..|+..|...|..++|++++.+...
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 477888888888888888888888766
No 448
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=47.08 E-value=71 Score=32.59 Aligned_cols=134 Identities=15% Similarity=0.016 Sum_probs=86.6
Q ss_pred CCCHHHHHHHHHHHhcc--CcHHHHHHHHHHchHhhCCCCCHHHHHHHHHHH-HhcCChHHHHHHHHhCC-CCC--CHHH
Q 007400 416 KPDKITLAVILNACTHS--GLVQEGLTYFESMTHDLGIIPNQEHHACLIELL-AQAGCSDQLMNQLEKMP-YEH--DSYL 489 (605)
Q Consensus 416 ~p~~~~~~~l~~~~~~~--g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~-~~~g~~~~A~~~~~~~~-~~~--~~~~ 489 (605)
-|+..+...++.-.... ...+-+-.++..|. . .+.|--...+. ...| .-.|+...|...+...- ..| ....
T Consensus 568 ~~~~~~~k~~~~r~~~~~i~e~e~~~~~~~~~~-~-~~~p~w~~ln~-aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~ 644 (886)
T KOG4507|consen 568 MPDDHARKILLSRINNYTIPEEEIGSFLFHAIN-K-PNAPIWLILNE-AGLYWRAVGNSTFAIACLQRALNLAPLQQDVP 644 (886)
T ss_pred CchHHHHHHHHHHHhcccCcHHHHHHHHHHHhc-C-CCCCeEEEeec-ccceeeecCCcHHHHHHHHHHhccChhhhccc
Confidence 34555555544433321 22333444454443 2 33333222222 2333 34689999998887752 222 2233
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCCC
Q 007400 490 WNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQF 552 (605)
Q Consensus 490 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 552 (605)
.-.|+....+.|-.-.|-.++.+.+.+.-..+-++..++.++....+.++|++.|+...+...
T Consensus 645 ~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~~ 707 (886)
T KOG4507|consen 645 LVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALEAFRQALKLTT 707 (886)
T ss_pred HHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHHHHHHHHhcCC
Confidence 445777778888889999999999998766788899999999999999999999998876543
No 449
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=46.97 E-value=4.4e+02 Score=29.21 Aligned_cols=27 Identities=30% Similarity=0.539 Sum_probs=21.8
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHH
Q 007400 284 SWTTLIAGYTRNGLGQKALELFTRMMI 310 (605)
Q Consensus 284 ~~~~l~~~~~~~g~~~~a~~~~~~m~~ 310 (605)
-|..|+..|...|++++|+++|.+..+
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d 532 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVD 532 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhc
Confidence 477788888888888888888888775
No 450
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=45.74 E-value=2e+02 Score=24.85 Aligned_cols=55 Identities=16% Similarity=0.175 Sum_probs=33.4
Q ss_pred HHHHHhccCChHHHHHHHHHHHHhCC--------------CCChhHHHHHHHHHHhcCChHHHHHHHhh
Q 007400 191 ILTICVKLEELKLTRQVHGQVLVTGF--------------LSNVVISSSIVDAYAKCGELSDARRLFDE 245 (605)
Q Consensus 191 ll~~~~~~~~~~~a~~~~~~~~~~~~--------------~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 245 (605)
++-.|.+..++....++++.+.+..+ .+--.+.|.....+.+.|.+|.|..++++
T Consensus 138 ~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLre 206 (233)
T PF14669_consen 138 LMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLRE 206 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHhc
Confidence 44445555555556666555544322 23334566777788888888888877774
No 451
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=45.41 E-value=2.8e+02 Score=26.51 Aligned_cols=163 Identities=12% Similarity=0.099 Sum_probs=104.7
Q ss_pred hcCCCC-CcchHHHHHHHHHHcC---C---------HHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCcHHHHHHHH
Q 007400 377 LTDNKE-NSMLWNTMISALTQHG---Y---------DEQAIRLFHDMVRSSVKP-DKITLAVILNACTHSGLVQEGLTYF 442 (605)
Q Consensus 377 ~~~~~~-~~~~~~~l~~~~~~~g---~---------~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~ 442 (605)
.+...| |+.+|-.++..--..- . .+.-+.++++.++. .| +......++..+.+..+.+...+-|
T Consensus 11 ~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~--np~~~~L~l~~l~~~~~~~~~~~l~~~w 88 (321)
T PF08424_consen 11 RVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKH--NPDSERLLLGYLEEGEKVWDSEKLAKKW 88 (321)
T ss_pred HHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 344433 6888998887543321 1 34567789999887 45 4567788888888888999999999
Q ss_pred HHchHhhCCCC-CHHHHHHHHHHHHh---cCChHHHHHHHHhC-------CCC--------CC-----HHHHHHHHHHHH
Q 007400 443 ESMTHDLGIIP-NQEHHACLIELLAQ---AGCSDQLMNQLEKM-------PYE--------HD-----SYLWNALHGVCR 498 (605)
Q Consensus 443 ~~~~~~~~~~p-~~~~~~~l~~~~~~---~g~~~~A~~~~~~~-------~~~--------~~-----~~~~~~l~~~~~ 498 (605)
+++... .| +...|...++.... .-.+++...+|.+. ... ++ ..++..+...+.
T Consensus 89 e~~l~~---~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~ 165 (321)
T PF08424_consen 89 EELLFK---NPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLR 165 (321)
T ss_pred HHHHHH---CCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHH
Confidence 999833 34 46777777776544 23566777766654 111 11 112223344556
Q ss_pred hcCCHHHHHHHHHHHHhc---CCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCCCcCC
Q 007400 499 IHGNIDMGRKVVDQLIDQ---NPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKE 555 (605)
Q Consensus 499 ~~g~~~~A~~~~~~~~~~---~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 555 (605)
..|-.+.|..+++.+++. .|.....- ...+....|+...+.++...
T Consensus 166 ~aG~~E~Ava~~Qa~lE~n~~~P~~~~~~-----------~~~~~~~~fe~FWeS~vpRi 214 (321)
T PF08424_consen 166 QAGYTERAVALWQALLEFNFFRPESLSSS-----------SFSERLESFEEFWESEVPRI 214 (321)
T ss_pred HCCchHHHHHHHHHHHHHHcCCccccccc-----------cHHHHHHHHHHHhCcCCCCC
Confidence 889999999999999998 45322211 11156667777777766543
No 452
>PRK13342 recombination factor protein RarA; Reviewed
Probab=44.44 E-value=3.4e+02 Score=27.14 Aligned_cols=47 Identities=19% Similarity=0.112 Sum_probs=32.1
Q ss_pred HHHHHHHHHh---CCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccc
Q 007400 285 WTTLIAGYTR---NGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIV 331 (605)
Q Consensus 285 ~~~l~~~~~~---~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~ 331 (605)
+..++.++.+ .++.+.|+.++..|.+.|..|....-..+..++-..|
T Consensus 230 ~~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~edig 279 (413)
T PRK13342 230 HYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIASEDIG 279 (413)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhc
Confidence 3344444444 4789999999999999998887666555555544443
No 453
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=44.16 E-value=1.3e+02 Score=31.32 Aligned_cols=47 Identities=9% Similarity=0.091 Sum_probs=28.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHhccCcH
Q 007400 389 TMISALTQHGYDEQAIRLFHDMVRSSVK--PDKITLAVILNACTHSGLV 435 (605)
Q Consensus 389 ~l~~~~~~~g~~~~a~~~~~~m~~~~~~--p~~~~~~~l~~~~~~~g~~ 435 (605)
+|..+|..+|++.++..+++.....+-. -=...++..++...+.|.+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf 81 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSF 81 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCc
Confidence 5667777777777777777776654211 1123566666666666654
No 454
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=44.09 E-value=63 Score=19.23 Aligned_cols=28 Identities=7% Similarity=0.190 Sum_probs=18.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 007400 489 LWNALHGVCRIHGNIDMGRKVVDQLIDQ 516 (605)
Q Consensus 489 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 516 (605)
++..|+......+++++|.+-|++++++
T Consensus 3 v~~~Lgeisle~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 3 VYDLLGEISLENENFEQAIEDYEKALEI 30 (38)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 4555666666677777777777777654
No 455
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=42.73 E-value=3e+02 Score=26.11 Aligned_cols=82 Identities=10% Similarity=0.013 Sum_probs=54.9
Q ss_pred HHHHHHHHHHchHhhCC---CCCHHHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 007400 435 VQEGLTYFESMTHDLGI---IPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVD 511 (605)
Q Consensus 435 ~~~a~~~~~~~~~~~~~---~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 511 (605)
.+.|.+.|+.......- ..++.....+.....+.|..+.-..+++.....++......++.+.+...+.+....+++
T Consensus 146 ~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~~~~~~k~~~l~aLa~~~d~~~~~~~l~ 225 (324)
T PF11838_consen 146 VAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNSTSPEEKRRLLSALACSPDPELLKRLLD 225 (324)
T ss_dssp HHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTTSTHHHHHHHHHHHTT-S-HHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhccCCHHHHHHHHHhhhccCCHHHHHHHHH
Confidence 56778888887732112 345666667777777888866666666665545677888888888888888888888888
Q ss_pred HHHhc
Q 007400 512 QLIDQ 516 (605)
Q Consensus 512 ~~~~~ 516 (605)
.++..
T Consensus 226 ~~l~~ 230 (324)
T PF11838_consen 226 LLLSN 230 (324)
T ss_dssp HHHCT
T ss_pred HHcCC
Confidence 88885
No 456
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=42.65 E-value=51 Score=30.62 Aligned_cols=39 Identities=23% Similarity=0.227 Sum_probs=30.6
Q ss_pred hhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChHHHH
Q 007400 283 VSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFS 321 (605)
Q Consensus 283 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~ 321 (605)
.-|+..|....+.|+.++|+.++++.++.|+.--..+|.
T Consensus 258 ~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFi 296 (303)
T PRK10564 258 SYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFI 296 (303)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHH
Confidence 346788999999999999999999999888655444443
No 457
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=41.99 E-value=32 Score=27.39 Aligned_cols=33 Identities=18% Similarity=0.289 Sum_probs=24.8
Q ss_pred HHhCCChHHHHHHHHHHHHCCCCCChHHHHHHHHH
Q 007400 292 YTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCA 326 (605)
Q Consensus 292 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 326 (605)
....|.-..|..+|..|++.|-+||. ++.|+..
T Consensus 105 lR~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~ 137 (140)
T PF11663_consen 105 LRAYGSKTDAYAVFRKMLERGNPPDD--WDALLKE 137 (140)
T ss_pred hhhhccCCcHHHHHHHHHhCCCCCcc--HHHHHHH
Confidence 34557778899999999999999984 4555543
No 458
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=41.75 E-value=3.6e+02 Score=26.71 Aligned_cols=211 Identities=13% Similarity=0.020 Sum_probs=0.0
Q ss_pred CCCCCChHHHHHHHHHHHhcCChhHHHHHHHH-------HHHcCCCCChhhHHH-----HHHHhhhcCChhHHHHHHHHH
Q 007400 11 NRKNLPNNCLIQSFLSLISKGQLSEAISSLDL-------LAQRGIRLPAETLAF-----ILQQCAESKSLKLGKRVHLHL 78 (605)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~-------~~~~g~~~~~~~~~~-----ll~~~~~~~~~~~a~~~~~~~ 78 (605)
.|+......+++.+.+++..+++.+-++.... ..+.|..|--..+.. +++..+-.||+..|.++++.+
T Consensus 69 ~~~~W~~~~VLnvL~sLv~kS~I~e~l~~~~~~~~~~~~~~~~g~~~l~~~LGYFSligLlRvh~LLGDY~~Alk~l~~i 148 (404)
T PF10255_consen 69 NPDVWNVYSVLNVLYSLVDKSQINEQLEAEKRGEDPDEVAGEYGSSPLYKMLGYFSLIGLLRVHCLLGDYYQALKVLENI 148 (404)
T ss_pred ccCcccHHHHHHHHHHHHHHHhHHHHHHHhhccCCchhhhcccccccHHHHhhHHHHHHHHHHHHhccCHHHHHHHhhcc
Q ss_pred ------HHhCCCCCchhhHHHHHHHHHhcCChhHHHHHhccCCCCCchHHHHHHH--HHHccCChHHHHHHHhhc-----
Q 007400 79 ------KLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLS--GYANLGMMKHARNLFDNM----- 145 (605)
Q Consensus 79 ------~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~--~~~~~~~~~~A~~~~~~~----- 145 (605)
+-....+....++-.+.-+|.-.+++.+|.+.|..+. .|-.-.+ ...+....+...+.-++|
T Consensus 149 dl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL-----~yi~r~k~~~~~~~~q~d~i~K~~eqMyaLlA 223 (404)
T PF10255_consen 149 DLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL-----LYIQRTKNQYHQRSYQYDQINKKNEQMYALLA 223 (404)
T ss_pred CcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHhhhhhccccchhhHHHhHHHHHHHHHH
Q ss_pred ------CCCCceeHHHHHHHH-------HhcCChHHHHHHHHHHHhCCCCCC-hhhHHHHHHHHhccCChHHHHHHHHHH
Q 007400 146 ------AERDVVSWNTMIIGY-------AKSGAVEEGLKFYKVLRRFSISCN-EFSFAGILTICVKLEELKLTRQVHGQV 211 (605)
Q Consensus 146 ------~~~~~~~~~~li~~~-------~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~ 211 (605)
+.+-..+-...++-= .+.|+.+.-.++|...--+=+.|. +..+.................-.++++
T Consensus 224 ic~~l~p~~lde~i~~~lkeky~ek~~kmq~gd~~~f~elF~~acPKFIsp~~pp~~~~~~~~~~~e~~~~Ql~~Fl~eV 303 (404)
T PF10255_consen 224 ICLSLCPQRLDESISSQLKEKYGEKMEKMQRGDEEAFEELFSFACPKFISPVSPPDYDGPSQNKNKEPYRRQLKLFLDEV 303 (404)
T ss_pred HHHHhCCCCCCHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHhhCCCccCCCCCCCcccccchhhhhHHHHHHHHHHHHH
Q ss_pred HHhCCCCChhHHHHH
Q 007400 212 LVTGFLSNVVISSSI 226 (605)
Q Consensus 212 ~~~~~~~~~~~~~~l 226 (605)
.....-|+...|-.|
T Consensus 304 ~~q~~l~~lRSyLKL 318 (404)
T PF10255_consen 304 KQQQKLPTLRSYLKL 318 (404)
T ss_pred HHhhhhhHHHHHHHh
No 459
>KOG1811 consensus Predicted Zn2+-binding protein, contains FYVE domain [General function prediction only]
Probab=41.20 E-value=1.9e+02 Score=29.65 Aligned_cols=73 Identities=15% Similarity=0.145 Sum_probs=51.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-CchHHHHHHH
Q 007400 457 HHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQS-SATHGLLSSI 530 (605)
Q Consensus 457 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~~l~~~ 530 (605)
.-.+|-+-+....++.-|.++..+.+. ....+|.+.+-+|.+.+++..|+.-|++++++...+ +.....+.+.
T Consensus 558 asecLRdqLie~ErYqlaV~mckKc~i-D~f~aW~AWGlA~Lk~e~~aaAR~KFkqafklkgedipdvi~diin~ 631 (1141)
T KOG1811|consen 558 ASECLRDQLIEAERYQLAVEMCKKCGI-DTFGAWHAWGLACLKAENLAAAREKFKQAFKLKGEDIPDVIFDIINL 631 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCC-CcccHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCCccchHHHHHHHh
Confidence 334455555666677777777777762 345689999999999999999999999999984333 3344444443
No 460
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=40.79 E-value=1.4e+02 Score=24.55 Aligned_cols=64 Identities=6% Similarity=0.050 Sum_probs=35.0
Q ss_pred HHHHHHhCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCh
Q 007400 172 FYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGEL 236 (605)
Q Consensus 172 ~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 236 (605)
+.+.+++.|++++..- ..++..+...++.-.|.++++.+.+.++..+..|.-.-+..+...|-+
T Consensus 8 ~~~~lk~~glr~T~qR-~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~Glv 71 (145)
T COG0735 8 AIERLKEAGLRLTPQR-LAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAGLV 71 (145)
T ss_pred HHHHHHHcCCCcCHHH-HHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCCCE
Confidence 3444555555544432 234445555555566666666666666655555544455666666643
No 461
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=40.77 E-value=3.6e+02 Score=26.36 Aligned_cols=57 Identities=16% Similarity=0.151 Sum_probs=41.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh-ccCcHHHHHHHHHHch
Q 007400 390 MISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACT-HSGLVQEGLTYFESMT 446 (605)
Q Consensus 390 l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~-~~g~~~~a~~~~~~~~ 446 (605)
.|..+.+.|-+..|.++.+-+......-|+......|+.|+ +.++++--+++.+...
T Consensus 109 ~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~ 166 (360)
T PF04910_consen 109 YIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPL 166 (360)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHh
Confidence 35567889999999999998888433335556666666654 6778887888777765
No 462
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=40.71 E-value=4e+02 Score=26.93 Aligned_cols=61 Identities=18% Similarity=0.138 Sum_probs=42.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCCCcCCCc
Q 007400 494 HGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQA 557 (605)
Q Consensus 494 ~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 557 (605)
..++....+...+..-.+.+.....+++.....-...+...|++.+|.+.+- ..++.+.++
T Consensus 213 Vr~llq~~~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~gn~~kA~KlL~---~sni~~~~g 273 (696)
T KOG2471|consen 213 VRFLLQTRNLKLAKREVKHVMNIAQDSSMALLLKSQLEYAHGNHPKAMKLLL---VSNIHKEAG 273 (696)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHhcchHHHHHHHH---hcccccccC
Confidence 3445555666666666666666655677777777899999999999987764 446666665
No 463
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=40.26 E-value=3.9e+02 Score=26.66 Aligned_cols=191 Identities=9% Similarity=-0.050 Sum_probs=103.9
Q ss_pred HHHHHhhcCCCCceeHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCC
Q 007400 138 ARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFL 217 (605)
Q Consensus 138 A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 217 (605)
...+.+.+..++.......+.++...+.......+...+.. ++.......+.++...+. + +...+...++ .
T Consensus 88 ~~~L~~~L~d~~~~vr~aaa~ALg~i~~~~a~~~L~~~L~~----~~p~vR~aal~al~~r~~-~-~~~~L~~~L~---d 158 (410)
T TIGR02270 88 LRSVLAVLQAGPEGLCAGIQAALGWLGGRQAEPWLEPLLAA----SEPPGRAIGLAALGAHRH-D-PGPALEAALT---H 158 (410)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHhcCCchHHHHHHHHHhcC----CChHHHHHHHHHHHhhcc-C-hHHHHHHHhc---C
Confidence 44455555555555666677777766665555444443322 344444455555554331 1 2233333332 3
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHhhcCCCCcchHHHHHHHHHhcCChHHHHHHHhh-CCCCChhhHHHHHHHHHhCC
Q 007400 218 SNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNE-MPEKNPVSWTTLIAGYTRNG 296 (605)
Q Consensus 218 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~-~~~~~~~~~~~l~~~~~~~g 296 (605)
++..+-..-+.+++..|..+..-.+..-....|..+-..-+.+....|. ++|...+.. ...++......+...+...
T Consensus 159 ~d~~Vra~A~raLG~l~~~~a~~~L~~al~d~~~~VR~aA~~al~~lG~-~~A~~~l~~~~~~~g~~~~~~l~~~lal~- 236 (410)
T TIGR02270 159 EDALVRAAALRALGELPRRLSESTLRLYLRDSDPEVRFAALEAGLLAGS-RLAWGVCRRFQVLEGGPHRQRLLVLLAVA- 236 (410)
T ss_pred CCHHHHHHHHHHHHhhccccchHHHHHHHcCCCHHHHHHHHHHHHHcCC-HhHHHHHHHHHhccCccHHHHHHHHHHhC-
Confidence 4555666666666666665444444444444566666667777777777 555555554 4445544444444433333
Q ss_pred ChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhcccchHHHHHHHHHHH
Q 007400 297 LGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLI 344 (605)
Q Consensus 297 ~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 344 (605)
..+++.+.+..+.+. +. +-...+.++...|+...+..+...+.
T Consensus 237 ~~~~a~~~L~~ll~d---~~--vr~~a~~AlG~lg~p~av~~L~~~l~ 279 (410)
T TIGR02270 237 GGPDAQAWLRELLQA---AA--TRREALRAVGLVGDVEAAPWCLEAMR 279 (410)
T ss_pred CchhHHHHHHHHhcC---hh--hHHHHHHHHHHcCCcchHHHHHHHhc
Confidence 334666666666653 22 55566677777777776666666554
No 464
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=40.10 E-value=1.1e+02 Score=28.03 Aligned_cols=18 Identities=17% Similarity=0.174 Sum_probs=8.0
Q ss_pred HHhccCcHHHHHHHHHHc
Q 007400 428 ACTHSGLVQEGLTYFESM 445 (605)
Q Consensus 428 ~~~~~g~~~~a~~~~~~~ 445 (605)
-|...|+++.|.++|+.+
T Consensus 187 ey~~~g~~~~A~~~l~~~ 204 (247)
T PF11817_consen 187 EYFRLGDYDKALKLLEPA 204 (247)
T ss_pred HHHHCCCHHHHHHHHHHH
Confidence 344444444444444444
No 465
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=39.85 E-value=3.4e+02 Score=25.80 Aligned_cols=80 Identities=13% Similarity=0.051 Sum_probs=33.0
Q ss_pred hHHHHHHHHHHHHcCC----CCChhHHHHHHHHHHhcCChHHHHHHHHhcCCCCCcchHHHHHHHHHHcCCHHHHHHHHH
Q 007400 333 LKHGKQVHGFLIRTNF----RSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFH 408 (605)
Q Consensus 333 ~~~a~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 408 (605)
.+.|.+.+......+. ..++.....+.....+.|+.+.-..+++.....++......++.+++-..+.+...++++
T Consensus 146 ~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~~~~~~k~~~l~aLa~~~d~~~~~~~l~ 225 (324)
T PF11838_consen 146 VAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNSTSPEEKRRLLSALACSPDPELLKRLLD 225 (324)
T ss_dssp HHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTTSTHHHHHHHHHHHTT-S-HHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhccCCHHHHHHHHHhhhccCCHHHHHHHHH
Confidence 4455555555555321 223334444444444444444433333333333233344444444444444444444444
Q ss_pred HHHH
Q 007400 409 DMVR 412 (605)
Q Consensus 409 ~m~~ 412 (605)
....
T Consensus 226 ~~l~ 229 (324)
T PF11838_consen 226 LLLS 229 (324)
T ss_dssp HHHC
T ss_pred HHcC
Confidence 4444
No 466
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=39.68 E-value=3e+02 Score=25.23 Aligned_cols=85 Identities=6% Similarity=0.121 Sum_probs=58.6
Q ss_pred HHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHH-HHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHH
Q 007400 472 DQLMNQLEKM--PYEHDSYLWNALHGVCRIHGNID-MGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLIN 548 (605)
Q Consensus 472 ~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~-~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 548 (605)
.+-++.++++ ..+.+-.+|..--......|+.. +-+++.+.|+..+..|--+|..--+++...+.|+.-+.+..++.
T Consensus 95 ~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rELef~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Ll 174 (318)
T KOG0530|consen 95 NKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRELEFTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDELAYADELL 174 (318)
T ss_pred HHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccchHHHHHHHHhccccchhhhHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3334444443 13345566665444444556666 77788888888877788888888888888888888888888888
Q ss_pred hCCCcCCC
Q 007400 549 ERQFKKEQ 556 (605)
Q Consensus 549 ~~~~~~~~ 556 (605)
+..+.+..
T Consensus 175 e~Di~NNS 182 (318)
T KOG0530|consen 175 EEDIRNNS 182 (318)
T ss_pred HHhhhccc
Confidence 87776553
No 467
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=39.60 E-value=2.5e+02 Score=24.16 Aligned_cols=23 Identities=13% Similarity=0.134 Sum_probs=17.6
Q ss_pred HHHHHHhcCChHHHHHHHHHHHh
Q 007400 156 MIIGYAKSGAVEEGLKFYKVLRR 178 (605)
Q Consensus 156 li~~~~~~~~~~~a~~~~~~m~~ 178 (605)
.+..|.+.|.+++|.+++++..+
T Consensus 117 aV~VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 117 AVAVCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHHHHhcCchHHHHHHHHHHhc
Confidence 34567888888888888888766
No 468
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=39.13 E-value=2.4e+02 Score=24.99 Aligned_cols=63 Identities=17% Similarity=0.207 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHhcCChH-------HHHHHHHhC----CC---CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 007400 455 QEHHACLIELLAQAGCSD-------QLMNQLEKM----PY---EHD-SYLWNALHGVCRIHGNIDMGRKVVDQLIDQN 517 (605)
Q Consensus 455 ~~~~~~l~~~~~~~g~~~-------~A~~~~~~~----~~---~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 517 (605)
...+-.+.+.|...|+.+ .|.+.|++. .. .-+ ..+...++....+.|+.++|...|.+++...
T Consensus 118 A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 118 AGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred HHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence 345566667777777744 344444443 11 112 3344456677789999999999999999873
No 469
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=39.10 E-value=4.9e+02 Score=27.43 Aligned_cols=72 Identities=11% Similarity=0.036 Sum_probs=26.9
Q ss_pred HHHHHHhhCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhcccchHHHHHHHHH
Q 007400 269 SASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGF 342 (605)
Q Consensus 269 ~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 342 (605)
....++.+..-.+...-.-++..|.+.|-.+.|.++.+.+-..- ....-|...+.-+.+.|+......+...
T Consensus 392 ~i~~lL~~~p~~t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~--~~~~~~g~AL~~~~ra~d~~~v~~i~~~ 463 (566)
T PF07575_consen 392 RIEELLPRVPLDTNDDAEKLLEICAELGLEDVAREICKILGQRL--LKEGRYGEALSWFIRAGDYSLVTRIADR 463 (566)
T ss_dssp HHHHHGGG----SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHH--HHHHHHHHHHHHHH--------------
T ss_pred HHHHHHhhCCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH--HHCCCHHHHHHHHHHCCCHHHHHHHHHH
Confidence 33444445444444455556666777777777666666554321 1122334444444455554444443333
No 470
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=39.01 E-value=1.5e+02 Score=21.59 Aligned_cols=45 Identities=13% Similarity=0.056 Sum_probs=37.2
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHHhhhcCChhHHHHHHHHHHHhC
Q 007400 38 SSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQ 82 (605)
Q Consensus 38 ~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 82 (605)
++|+.....|+..|+..|..++..+.-+-.++...+++..+....
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~s~~ 73 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMCSGS 73 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHHccc
Confidence 889999999999999999999998877777777788777776443
No 471
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=38.83 E-value=60 Score=21.87 Aligned_cols=26 Identities=12% Similarity=0.241 Sum_probs=13.2
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHch
Q 007400 421 TLAVILNACTHSGLVQEGLTYFESMT 446 (605)
Q Consensus 421 ~~~~l~~~~~~~g~~~~a~~~~~~~~ 446 (605)
--..++.++...|++++|.++++.+.
T Consensus 25 NhLqvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 25 NHLQVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 33444555555555555555555544
No 472
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=38.81 E-value=1.3e+02 Score=25.49 Aligned_cols=60 Identities=5% Similarity=-0.076 Sum_probs=31.3
Q ss_pred HhCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChH
Q 007400 177 RRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELS 237 (605)
Q Consensus 177 ~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 237 (605)
++.|+.++..-. .++..+...+..-.|.++++.+.+.++..+..|...-+..+...|-+.
T Consensus 18 ~~~GlR~T~qR~-~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv~ 77 (169)
T PRK11639 18 AQRNVRLTPQRL-EVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFVH 77 (169)
T ss_pred HHcCCCCCHHHH-HHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCEE
Confidence 344554444333 333333333445566666666666665555555444556666666544
No 473
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=38.47 E-value=3.9e+02 Score=28.65 Aligned_cols=158 Identities=13% Similarity=0.075 Sum_probs=92.7
Q ss_pred CCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC------CC-hhhHHHHHHHhhhcCChhHHHHHHHHHHHhCC
Q 007400 11 NRKNLPNNCLIQSFLSLISKGQLSEAISSLDLLAQRGIR------LP-AETLAFILQQCAESKSLKLGKRVHLHLKLTQR 83 (605)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~g~~------~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 83 (605)
+|++++...+.+.++++....+++..+++.+.+.+.--. ++ ...|...++.--+.||-++|+.+.-.+.+...
T Consensus 195 np~VL~~d~V~nlmlSyRDvQdY~amirLVe~Lk~iP~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg 274 (1226)
T KOG4279|consen 195 NPDVLHPDTVSNLMLSYRDVQDYDAMIRLVEDLKRIPDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEG 274 (1226)
T ss_pred CccccCHHHHHHHHhhhccccchHHHHHHHHHHHhCcchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcC
Confidence 688889999999999998889999999999998763200 11 12233344444456888888888777766544
Q ss_pred CCCchhhHHHHH---------HHHHhcCChhHHHHHhccCCC--CCch---HHHHHHHH---------------------
Q 007400 84 KTPTTFLSNHLI---------SMYFKCGSDVDARKVFDKIPV--KNLF---SYNNMLSG--------------------- 128 (605)
Q Consensus 84 ~~~~~~~~~~l~---------~~~~~~g~~~~a~~~~~~~~~--~~~~---~~~~li~~--------------------- 128 (605)
...+. .|-... +.|...+..+.|.++|++.-+ |+.. -+..++.+
T Consensus 275 ~vapD-m~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFeveP~~~sGIN~atLL~aaG~~Fens~Elq~IgmkLn~L 353 (1226)
T KOG4279|consen 275 PVAPD-MYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEVEPLEYSGINLATLLRAAGEHFENSLELQQIGMKLNSL 353 (1226)
T ss_pred CCCCc-eeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhccCchhhccccHHHHHHHhhhhccchHHHHHHHHHHHHH
Confidence 33222 232222 223345667778888888753 3221 12222222
Q ss_pred HHccCChHHHHHHHhhcCCCCceeHHHHHHHHHhcCChHHHHHHHHHHHh
Q 007400 129 YANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRR 178 (605)
Q Consensus 129 ~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 178 (605)
+.+.|.++...+.|+ + ...+.+-.-.+++.+|.+.-+.|-+
T Consensus 354 lgrKG~leklq~YWd------V---~~y~~asVLAnd~~kaiqAae~mfK 394 (1226)
T KOG4279|consen 354 LGRKGALEKLQEYWD------V---ATYFEASVLANDYQKAIQAAEMMFK 394 (1226)
T ss_pred hhccchHHHHHHHHh------H---HHhhhhhhhccCHHHHHHHHHHHhc
Confidence 223333333333322 1 1234445556788888888888877
No 474
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=37.71 E-value=59 Score=30.19 Aligned_cols=36 Identities=25% Similarity=0.396 Sum_probs=23.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhH
Q 007400 153 WNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSF 188 (605)
Q Consensus 153 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~ 188 (605)
|+..|....+.|++++|+.++++.++.|+.--..+|
T Consensus 260 y~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tF 295 (303)
T PRK10564 260 FNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTF 295 (303)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHH
Confidence 456677777777777777777777776655443343
No 475
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=37.55 E-value=5.3e+02 Score=27.45 Aligned_cols=177 Identities=16% Similarity=0.139 Sum_probs=97.0
Q ss_pred HHHHHHHHHH-cCCCCC--hhhHHHHHHHhh-hcCChhHHHHHHHHHHHhCCCCCch----hhHHHHHHHHHhcCChhHH
Q 007400 36 AISSLDLLAQ-RGIRLP--AETLAFILQQCA-ESKSLKLGKRVHLHLKLTQRKTPTT----FLSNHLISMYFKCGSDVDA 107 (605)
Q Consensus 36 a~~~~~~~~~-~g~~~~--~~~~~~ll~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~a 107 (605)
|+..++...+ ..++|. ..+...+...+. ...+.+.|+..+++.+.....+.-. .+...++..+.+.+... |
T Consensus 40 ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a 118 (608)
T PF10345_consen 40 AIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-A 118 (608)
T ss_pred HHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-H
Confidence 4555555553 223332 245555666665 5778999999888765444331111 12334555666666555 7
Q ss_pred HHHhccCCC---C---Cc--hHHHHH-HHHHHccCChHHHHHHHhhcCC-----CC--ceeHHHHHHHH--HhcCChHHH
Q 007400 108 RKVFDKIPV---K---NL--FSYNNM-LSGYANLGMMKHARNLFDNMAE-----RD--VVSWNTMIIGY--AKSGAVEEG 169 (605)
Q Consensus 108 ~~~~~~~~~---~---~~--~~~~~l-i~~~~~~~~~~~A~~~~~~~~~-----~~--~~~~~~li~~~--~~~~~~~~a 169 (605)
...+++..+ . +. ..+..+ +..+...++...|.+.++.+.. .| +..+-.++.+. ...+..+++
T Consensus 119 ~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~ 198 (608)
T PF10345_consen 119 LKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDV 198 (608)
T ss_pred HHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhH
Confidence 777766542 1 11 233333 3333334788889888887652 22 23333444443 345667778
Q ss_pred HHHHHHHHhCCC---------CCChhhHHHHHHHHh--ccCChHHHHHHHHHHHH
Q 007400 170 LKFYKVLRRFSI---------SCNEFSFAGILTICV--KLEELKLTRQVHGQVLV 213 (605)
Q Consensus 170 ~~~~~~m~~~~~---------~p~~~~~~~ll~~~~--~~~~~~~a~~~~~~~~~ 213 (605)
.+.++.+..... .|-..+|..+++.++ ..|+++.+...++++..
T Consensus 199 ~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~ 253 (608)
T PF10345_consen 199 LELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQ 253 (608)
T ss_pred HHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 777777643211 234556777777654 56777677766665543
No 476
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=36.80 E-value=62 Score=21.80 Aligned_cols=26 Identities=23% Similarity=0.263 Sum_probs=18.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 007400 387 WNTMISALTQHGYDEQAIRLFHDMVR 412 (605)
Q Consensus 387 ~~~l~~~~~~~g~~~~a~~~~~~m~~ 412 (605)
.-..|.++...|++++|.++++++..
T Consensus 26 hLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 26 HLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 34567778888888888888777654
No 477
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=36.16 E-value=3.2e+02 Score=24.53 Aligned_cols=111 Identities=14% Similarity=0.111 Sum_probs=57.5
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCC-CCHH--HHHHHHHHHhccCcHHHHHHHHHHchHhhCCCCCHHHHHHHHHHHHhc
Q 007400 392 SALTQHGYDEQAIRLFHDMVRSSVK-PDKI--TLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQA 468 (605)
Q Consensus 392 ~~~~~~g~~~~a~~~~~~m~~~~~~-p~~~--~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 468 (605)
--+...|+++.|+++.+-+++.|+. |+.. ++-+++- ++....-.... +.|...++.....+.
T Consensus 91 vW~~D~Gd~~~AL~ia~yAI~~~l~~Pd~f~R~~~t~va--------eev~~~A~~~~-~ag~~~e~~~~~~~~------ 155 (230)
T PHA02537 91 VWRFDIGDFDGALEIAEYALEHGLTMPDQFRRTLANFVA--------EEVANAALKAA-SAGESVEPYFLRVFL------ 155 (230)
T ss_pred eeeeeccCHHHHHHHHHHHHHcCCCCCccccCCchHHHH--------HHHHHHHHHHH-HcCCCCChHHHHHHH------
Confidence 3456789999999999999998853 4332 2222210 12222222222 224333333222211
Q ss_pred CChHHHHHHHHh--CCCCCCHHHHHHHHHHHH---------hcCCHHHHHHHHHHHHhcCCCCCchHH
Q 007400 469 GCSDQLMNQLEK--MPYEHDSYLWNALHGVCR---------IHGNIDMGRKVVDQLIDQNPQSSATHG 525 (605)
Q Consensus 469 g~~~~A~~~~~~--~~~~~~~~~~~~l~~~~~---------~~g~~~~A~~~~~~~~~~~p~~~~~~~ 525 (605)
.+-.. |+.+.....|..++..+. ..++...|..+++++++++| +...-.
T Consensus 156 -------~l~~~~dmpd~vrAKl~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~-k~GVK~ 215 (230)
T PHA02537 156 -------DLTTEWDMPDEVRAKLYKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLND-KCGVKK 215 (230)
T ss_pred -------HHHhcCCCChHHHHHHHHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCC-CCChHH
Confidence 11122 221122334444555552 34677899999999999998 444433
No 478
>TIGR01558 sm_term_P27 phage terminase, small subunit, putative, P27 family. Members tend to be adjacent to the phage terminase large subunit gene.
Probab=36.02 E-value=1.2e+02 Score=23.60 Aligned_cols=30 Identities=13% Similarity=0.083 Sum_probs=25.9
Q ss_pred CCCcchHHHHHHHHHHHHHHhhCCCCCCCC
Q 007400 575 SLHPMRDVLYSVLEQLAGQMGEDAPSLDAD 604 (605)
Q Consensus 575 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 604 (605)
..||..........++.+...+.|.+|.++
T Consensus 67 k~nPa~~i~~~a~~~~~~l~~elGLtP~sR 96 (116)
T TIGR01558 67 KANPALTVVEDAFKQLRSIGSALGLTPSSR 96 (116)
T ss_pred ecChHHHHHHHHHHHHHHHHHHcCCCHHHH
Confidence 359999888888999999999999999874
No 479
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=35.84 E-value=4.4e+02 Score=26.00 Aligned_cols=52 Identities=19% Similarity=0.089 Sum_probs=37.5
Q ss_pred CChhhHHHHHHHHHhC---CChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccc
Q 007400 280 KNPVSWTTLIAGYTRN---GLGQKALELFTRMMILRIRPNQHTFSSCLCACASIV 331 (605)
Q Consensus 280 ~~~~~~~~l~~~~~~~---g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~ 331 (605)
++-..+-.+++++.++ .+++.|+-++-+|.+.|-.|-...-..++-+.-..|
T Consensus 244 k~gD~hYdliSA~hKSvRGSD~dAALyylARmi~~GeDp~yiARRlv~~AsEDIG 298 (436)
T COG2256 244 KDGDAHYDLISALHKSVRGSDPDAALYYLARMIEAGEDPLYIARRLVRIASEDIG 298 (436)
T ss_pred CCcchHHHHHHHHHHhhccCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcc
Confidence 3444555667777654 789999999999999997777766666666655554
No 480
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=35.67 E-value=1.4e+02 Score=27.21 Aligned_cols=52 Identities=12% Similarity=-0.010 Sum_probs=27.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCC------CCchHHHHHHHHHhcCCchHHHHHH
Q 007400 493 LHGVCRIHGNIDMGRKVVDQLIDQNPQ------SSATHGLLSSIYSALGKGRLVEKVR 544 (605)
Q Consensus 493 l~~~~~~~g~~~~A~~~~~~~~~~~p~------~~~~~~~l~~~~~~~g~~~~a~~~~ 544 (605)
++.-|...|++++|.++|+.+...... ...+...+..++.+.|+.++.+.+.
T Consensus 184 ~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~ 241 (247)
T PF11817_consen 184 MAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTS 241 (247)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 444555555666666666555433111 2234445566666666666655553
No 481
>cd08332 CARD_CASP2 Caspase activation and recruitment domain of Caspase-2. Caspase activation and recruitment domain (CARD) similar to that found in caspase-2. Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Caspase-2 (also known as ICH1, NEDD2, or CASP2) is one of the most evolutionarily conserved caspases, and plays a role in apoptosis, DNA damage response, cell cycle regulation, and tumor suppression. It is localized in the nucleus and exhibits properties of both an initiator and an effector caspase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and
Probab=35.59 E-value=1.1e+02 Score=22.50 Aligned_cols=27 Identities=15% Similarity=0.441 Sum_probs=11.8
Q ss_pred hHHHHHHHhhCCCCChhhHHHHHHHHH
Q 007400 267 MESASKLFNEMPEKNPVSWTTLIAGYT 293 (605)
Q Consensus 267 ~~~A~~~~~~~~~~~~~~~~~l~~~~~ 293 (605)
.+++.++++.+..+.+.+|..+..++.
T Consensus 50 ~~k~~~Lld~L~~RG~~AF~~F~~aL~ 76 (90)
T cd08332 50 FSQNVALLNLLPKRGPRAFSAFCEALR 76 (90)
T ss_pred HHHHHHHHHHHHHhChhHHHHHHHHHH
Confidence 334444444444444444444444443
No 482
>cd08332 CARD_CASP2 Caspase activation and recruitment domain of Caspase-2. Caspase activation and recruitment domain (CARD) similar to that found in caspase-2. Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Caspase-2 (also known as ICH1, NEDD2, or CASP2) is one of the most evolutionarily conserved caspases, and plays a role in apoptosis, DNA damage response, cell cycle regulation, and tumor suppression. It is localized in the nucleus and exhibits properties of both an initiator and an effector caspase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and
Probab=35.51 E-value=76 Score=23.42 Aligned_cols=28 Identities=7% Similarity=0.146 Sum_probs=13.3
Q ss_pred ChhHHHHHhccCCCCCchHHHHHHHHHH
Q 007400 103 SDVDARKVFDKIPVKNLFSYNNMLSGYA 130 (605)
Q Consensus 103 ~~~~a~~~~~~~~~~~~~~~~~li~~~~ 130 (605)
+.+.+..+++.++..++.+|..+..++.
T Consensus 49 ~~~k~~~Lld~L~~RG~~AF~~F~~aL~ 76 (90)
T cd08332 49 SFSQNVALLNLLPKRGPRAFSAFCEALR 76 (90)
T ss_pred cHHHHHHHHHHHHHhChhHHHHHHHHHH
Confidence 3444444444444444444444444443
No 483
>PF02607 B12-binding_2: B12 binding domain; InterPro: IPR003759 Cobalamin-dependent methionine synthase (2.1.1.13 from EC) is a large modular protein that catalyses methyl transfer from methyltetrahydrofolate (CH3-H4folate) to homocysteine. During the catalytic cycle, it supports three distinct methyl transfer reactions, each involving the cobalamin (vitamin B12) cofactor and a substrate bound to its own functional unit []. The cobalamin cofactor plays an essential role in this reaction, accepting the methyl group from CH3-H4folate to form methylcob(III)alamin, and in turn donating the methyl group to homocysteine to generate methionine and cob(I)alamin. Methionine synthase is a large enzyme composed of four structurally and functionally distinct modules: the first two modules bind homocysteine and CH3-H4folate, the third module binds the cobalamin cofactor and the C-terminal module binds S-adenosylmethionine. The cobalamin-binding module is composed of two structurally distinct domains: a 4-helical bundle cap domain (residues 651-740 in the Escherichia coli enzyme) and an alpha/beta B12-binding domain (residues 741-896) (IPR006158 from INTERPRO). The 4-helical bundle forms a cap over the alpha/beta domain, which acts to shield the methyl ligand of cobalamin from solvent []. Furthermore, in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO). The alpha/beta domain is a common cobalamin-binding motif, whereas the 4-helical bundle domain with its methyl cap is a distinctive feature of methionine synthases. This entry represents the 4-helical bundle cap domain. This domain is also present in other shorter proteins that bind to B12, and is always found N terminus to the alpha/beta B12-binding domain.; GO: 0008705 methionine synthase activity, 0031419 cobalamin binding, 0046872 metal ion binding, 0009086 methionine biosynthetic process; PDB: 3EZX_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 2I2X_P.
Probab=34.20 E-value=1.1e+02 Score=21.66 Aligned_cols=45 Identities=18% Similarity=0.180 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHh
Q 007400 18 NCLIQSFLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQC 62 (605)
Q Consensus 18 ~~~~~~~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~ 62 (605)
..+...+...+-.|+.+.+.++++.....|.+|.......+..+.
T Consensus 2 ~~~~~~l~~al~~~d~~~~~~~~~~~l~~g~~~~~i~~~~l~p~m 46 (79)
T PF02607_consen 2 EELIERLLDALLAGDEEEAEALLEEALAQGYPPEDIIEEILMPAM 46 (79)
T ss_dssp HHHHHHHHHHHHTT-CCHHHHHHHHHHHCSSSTTHHHHHTHHHHH
T ss_pred hHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 345566666677889999999999998887666554444444443
No 484
>PHA02875 ankyrin repeat protein; Provisional
Probab=34.08 E-value=4.8e+02 Score=25.91 Aligned_cols=209 Identities=11% Similarity=-0.016 Sum_probs=0.0
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCCChhh--HHHHHHHhhhcCChhHHHHHHHHHHHhCCCCCch-hhHHHHHHHHH
Q 007400 23 SFLSLISKGQLSEAISSLDLLAQRGIRLPAET--LAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTT-FLSNHLISMYF 99 (605)
Q Consensus 23 ~~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~--~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~ 99 (605)
++...++.|+. ++++.+.+.|..|+... -...+..++..|+.+ +.+.+++.|..+... .....-+...+
T Consensus 5 ~L~~A~~~g~~----~iv~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~----~v~~Ll~~ga~~~~~~~~~~t~L~~A~ 76 (413)
T PHA02875 5 ALCDAILFGEL----DIARRLLDIGINPNFEIYDGISPIKLAMKFRDSE----AIKLLMKHGAIPDVKYPDIESELHDAV 76 (413)
T ss_pred HHHHHHHhCCH----HHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHH----HHHHHHhCCCCccccCCCcccHHHHHH
Q ss_pred hcCChhHHHHHhccCCCCCchHHH---HHHHHHHccCChHHHHHHHhhcCCCCceeHH--HHHHHHHhcCChHHHHHHHH
Q 007400 100 KCGSDVDARKVFDKIPVKNLFSYN---NMLSGYANLGMMKHARNLFDNMAERDVVSWN--TMIIGYAKSGAVEEGLKFYK 174 (605)
Q Consensus 100 ~~g~~~~a~~~~~~~~~~~~~~~~---~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~--~li~~~~~~~~~~~a~~~~~ 174 (605)
..|+.+.+..+++.-...+..... +.+...+..|+.+-+..+++.-..++..... +.+...+..|+.+-+.-+++
T Consensus 77 ~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~ 156 (413)
T PHA02875 77 EEGDVKAVEELLDLGKFADDVFYKDGMTPLHLATILKKLDIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLID 156 (413)
T ss_pred HCCCHHHHHHHHHcCCcccccccCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHh
Q ss_pred HHHhCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHH---HHHHHHHhcCChHHHHHHHhh
Q 007400 175 VLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISS---SIVDAYAKCGELSDARRLFDE 245 (605)
Q Consensus 175 ~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~---~l~~~~~~~g~~~~a~~~~~~ 245 (605)
.-..... .|..-.+.+..++.... .++.+.+++.|..++..... +++...+..|+.+-+.-+++.
T Consensus 157 ~g~~~~~-~d~~g~TpL~~A~~~g~-----~eiv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~iv~~Ll~~ 224 (413)
T PHA02875 157 HKACLDI-EDCCGCTPLIIAMAKGD-----IAICKMLLDSGANIDYFGKNGCVAALCYAIENNKIDIVRLFIKR 224 (413)
T ss_pred cCCCCCC-CCCCCCCHHHHHHHcCC-----HHHHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHHHHHHHHHC
No 485
>PRK13342 recombination factor protein RarA; Reviewed
Probab=33.23 E-value=5.1e+02 Score=25.91 Aligned_cols=99 Identities=10% Similarity=0.044 Sum_probs=54.9
Q ss_pred CCChHHHHHHHHHHhcccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcC---CCCCcchHHHH
Q 007400 314 RPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTD---NKENSMLWNTM 390 (605)
Q Consensus 314 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~~l 390 (605)
..+......++..+ .|+...+..+++.+...+...+. +...+++.... .+ +...+..+
T Consensus 173 ~i~~~al~~l~~~s--~Gd~R~aln~Le~~~~~~~~It~----------------~~v~~~~~~~~~~~d~-~~~~~~~~ 233 (413)
T PRK13342 173 ELDDEALDALARLA--NGDARRALNLLELAALGVDSITL----------------ELLEEALQKRAARYDK-DGDEHYDL 233 (413)
T ss_pred CCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHccCCCCH----------------HHHHHHHhhhhhccCC-CccHHHHH
Confidence 44555555554433 67888888777776544212222 12222222111 11 22334445
Q ss_pred HHHHHH---cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 007400 391 ISALTQ---HGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTH 431 (605)
Q Consensus 391 ~~~~~~---~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 431 (605)
+.++.+ .++.+.|+.++.+|++.|..|....-..+..++..
T Consensus 234 isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~ed 277 (413)
T PRK13342 234 ISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIASED 277 (413)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 555544 47899999999999999887776555555444433
No 486
>PRK09462 fur ferric uptake regulator; Provisional
Probab=33.20 E-value=2.6e+02 Score=22.95 Aligned_cols=61 Identities=8% Similarity=0.133 Sum_probs=36.0
Q ss_pred HHHhCCCCCChhhHHHHHHHHhc-cCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCh
Q 007400 175 VLRRFSISCNEFSFAGILTICVK-LEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGEL 236 (605)
Q Consensus 175 ~m~~~~~~p~~~~~~~ll~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 236 (605)
.+.+.|+.++..-. .++..+.. .+..-.|.++++.+.+.++..+..|...-+..+...|-+
T Consensus 7 ~l~~~glr~T~qR~-~Il~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~Gli 68 (148)
T PRK09462 7 ALKKAGLKVTLPRL-KILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIV 68 (148)
T ss_pred HHHHcCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCCE
Confidence 34555665544432 33344433 345667788888887777666666655566666666644
No 487
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=32.98 E-value=1.5e+02 Score=30.82 Aligned_cols=84 Identities=6% Similarity=0.044 Sum_probs=42.4
Q ss_pred ccCcHHHHHHHHHHchHhhCCCCC------HHHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCC
Q 007400 431 HSGLVQEGLTYFESMTHDLGIIPN------QEHHACLIELLAQAGCSDQLMNQLEKMP-YEH-DSYLWNALHGVCRIHGN 502 (605)
Q Consensus 431 ~~g~~~~a~~~~~~~~~~~~~~p~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~g~ 502 (605)
+..++..+.++|..-.+. +..| ...+..|.-+|....+.|+|.+++++.. +.| ++.+-.....+....|+
T Consensus 366 ~~~~Y~~s~~~y~~Sl~~--i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~~~~~E~~ 443 (872)
T KOG4814|consen 366 KMEKYVVSIRFYKLSLKD--IISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQSFLAEDK 443 (872)
T ss_pred HHHHHHHHHHHHHHHHHh--ccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcc
Confidence 345566666666554411 1111 2234445555666666666666666654 111 22232333444555566
Q ss_pred HHHHHHHHHHHHhc
Q 007400 503 IDMGRKVVDQLIDQ 516 (605)
Q Consensus 503 ~~~A~~~~~~~~~~ 516 (605)
-++|+....+....
T Consensus 444 Se~AL~~~~~~~s~ 457 (872)
T KOG4814|consen 444 SEEALTCLQKIKSS 457 (872)
T ss_pred hHHHHHHHHHHHhh
Confidence 66666666665554
No 488
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=32.71 E-value=74 Score=29.50 Aligned_cols=49 Identities=12% Similarity=0.108 Sum_probs=27.1
Q ss_pred hccCcHHHHHHHHHHchHhhCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHhC
Q 007400 430 THSGLVQEGLTYFESMTHDLGIIPN-QEHHACLIELLAQAGCSDQLMNQLEKM 481 (605)
Q Consensus 430 ~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~ 481 (605)
.+.|+.++|..+|+.+. .+.|+ +.....+.......+++-+|-+.|-+.
T Consensus 127 ~~~Gk~ekA~~lfeHAl---alaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~A 176 (472)
T KOG3824|consen 127 RKDGKLEKAMTLFEHAL---ALAPTNPQILIEMGQFREMHNEIVEADQCYVKA 176 (472)
T ss_pred HhccchHHHHHHHHHHH---hcCCCCHHHHHHHhHHHHhhhhhHhhhhhhhee
Confidence 34566677777776666 45555 444444444444445555555555443
No 489
>COG5071 RPN5 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=32.43 E-value=4.2e+02 Score=24.76 Aligned_cols=118 Identities=13% Similarity=0.063 Sum_probs=79.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhCCCC------CCHHHHHH--HHHHHHhcCCHHHHHHHHHHHHhc---CCCCC----
Q 007400 457 HHACLIELLAQAGCSDQLMNQLEKMPYE------HDSYLWNA--LHGVCRIHGNIDMGRKVVDQLIDQ---NPQSS---- 521 (605)
Q Consensus 457 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~~--l~~~~~~~g~~~~A~~~~~~~~~~---~p~~~---- 521 (605)
.-..|.+.+..+|+.+.|.+++...+++ .+..+-.. -+..|...+++-.|-.+-+++.+. .|+-.
T Consensus 133 iT~~L~~ikee~Gdi~sA~Dilcn~pVETygs~~~Sekv~fiLEQ~rL~vl~~Dy~~A~~~~kKI~KK~Fe~~d~~slKl 212 (439)
T COG5071 133 LTQLLSQIKEEQGDIKSAQDILCNEPVETYGSFDLSEKVAFILEQVRLFLLRSDYYMASTYTKKINKKFFEKEDVQSLKL 212 (439)
T ss_pred HHHHHHHHHHHhcchhHHHHHHhcCchhhccchhHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHhccccHHHHHH
Confidence 3355677888999999999999877632 22222222 256778899999999999999886 44322
Q ss_pred chHHHHHHHHHhcCCchHHHHHHHHHHhCCCcCCCceeEEEECCEEEEEEeCC
Q 007400 522 ATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSD 574 (605)
Q Consensus 522 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~ 574 (605)
..|..+..+......|=++-++++.+-...........|..+...+..|+..-
T Consensus 213 kyYeL~V~i~Lh~R~Yl~v~~y~~~vY~t~~~~~d~Akwk~VLS~~v~F~iLt 265 (439)
T COG5071 213 KYYELKVRIGLHDRAYLDVCKYYRAVYDTAVVQEDPAKWKEVLSNVVCFALLT 265 (439)
T ss_pred HHHHHhheeecccHHHHHHHHHHHHHHHHHHhccCcccccchhhcceeeEEec
Confidence 34555566655566667777666666444444556688888888777776644
No 490
>PF04034 DUF367: Domain of unknown function (DUF367); InterPro: IPR007177 This domain is found in a family of proteins of unknown function. It appears to be found in eukaryotes and archaebacteria, and occurs associated with a potential metal-binding region in RNase L inhibitor, RLI (IPR007209 from INTERPRO).
Probab=32.34 E-value=2.6e+02 Score=22.26 Aligned_cols=58 Identities=16% Similarity=0.090 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHH-HHHHHHHhcCCHHHHHHHHHH
Q 007400 455 QEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWN-ALHGVCRIHGNIDMGRKVVDQ 512 (605)
Q Consensus 455 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~ 512 (605)
..+..++..++.=.|..++|.++++.....++-...| .++..|....+.++..++=++
T Consensus 66 LscvEAlAAaLyI~G~~~~A~~lL~~FkWG~~F~~LN~elLe~Y~~~~~~~ev~~~q~~ 124 (127)
T PF04034_consen 66 LSCVEALAAALYILGFKEQAEELLSKFKWGHTFLELNKELLEAYAKCKTSEEVIEIQNE 124 (127)
T ss_pred ccHHHHHHHHHHHcCCHHHHHHHHhcCCCcHHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 3455566666777777777777777766445444444 366777776666655554443
No 491
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=32.12 E-value=4.1e+02 Score=24.95 Aligned_cols=26 Identities=15% Similarity=0.073 Sum_probs=18.8
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHH
Q 007400 285 WTTLIAGYTRNGLGQKALELFTRMMI 310 (605)
Q Consensus 285 ~~~l~~~~~~~g~~~~a~~~~~~m~~ 310 (605)
-...++.+...|++..|++++.+..+
T Consensus 130 ~~~~l~~ll~~~dy~~Al~li~~~~~ 155 (291)
T PF10475_consen 130 TQSRLQELLEEGDYPGALDLIEECQQ 155 (291)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 34456667788888888888877665
No 492
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=31.40 E-value=1.8e+02 Score=21.85 Aligned_cols=25 Identities=24% Similarity=0.302 Sum_probs=12.2
Q ss_pred CchHHHHHHHHHhcCCchHHHHHHH
Q 007400 521 SATHGLLSSIYSALGKGRLVEKVRQ 545 (605)
Q Consensus 521 ~~~~~~l~~~~~~~g~~~~a~~~~~ 545 (605)
+.....|+.+|.+.|+.+.|.+-|+
T Consensus 72 PG~HAhLGlLys~~G~~e~a~~eFe 96 (121)
T COG4259 72 PGYHAHLGLLYSNSGKDEQAVREFE 96 (121)
T ss_pred CcHHHHHHHHHhhcCChHHHHHHHH
Confidence 3444445555555555555544444
No 493
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=31.33 E-value=5.2e+02 Score=26.43 Aligned_cols=32 Identities=6% Similarity=-0.072 Sum_probs=24.0
Q ss_pred HhCCChHHHHHHHHHHHHCCCCCChHHHHHHH
Q 007400 293 TRNGLGQKALELFTRMMILRIRPNQHTFSSCL 324 (605)
Q Consensus 293 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll 324 (605)
...++++.|+.++.+|...|..|....-..+.
T Consensus 254 i~~~d~~~Al~~l~~ll~~Gedp~~i~r~l~~ 285 (472)
T PRK14962 254 IFNGDVKRVFTVLDDVYYSGKDYEVLIQQAIE 285 (472)
T ss_pred HHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 45689999999999999988777665444333
No 494
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=31.15 E-value=1.2e+02 Score=23.47 Aligned_cols=44 Identities=14% Similarity=0.057 Sum_probs=24.6
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccC
Q 007400 156 MIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLE 199 (605)
Q Consensus 156 li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~ 199 (605)
++..+...+..-.|.++++.+.+.+..++..|....|+.+...|
T Consensus 6 Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~G 49 (116)
T cd07153 6 ILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAG 49 (116)
T ss_pred HHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCC
Confidence 34444445555566666666666555555555555555554444
No 495
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=31.05 E-value=5.2e+02 Score=25.39 Aligned_cols=52 Identities=12% Similarity=0.006 Sum_probs=31.1
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHH----HHHHHHHHHh--ccCcHHHHHHHHHH
Q 007400 393 ALTQHGYDEQAIRLFHDMVRSSVKPDKI----TLAVILNACT--HSGLVQEGLTYFES 444 (605)
Q Consensus 393 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~----~~~~l~~~~~--~~g~~~~a~~~~~~ 444 (605)
.+.+.+++..|.++|+++....+.|+.. .+..+..+|. ..-++++|...++.
T Consensus 139 ~l~n~~dy~aA~~~~~~L~~r~l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~~ 196 (380)
T TIGR02710 139 RAINAFDYLFAHARLETLLRRLLSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLND 196 (380)
T ss_pred HHHHhcChHHHHHHHHHHHhcccChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHhh
Confidence 4556777888888888877765544433 2333333433 34566777777764
No 496
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=30.60 E-value=1.1e+02 Score=21.87 Aligned_cols=42 Identities=7% Similarity=0.030 Sum_probs=26.4
Q ss_pred hcCCHHHHHHHHHHHHhc------CCCCCchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 007400 499 IHGNIDMGRKVVDQLIDQ------NPQSSATHGLLSSIYSALGKGRLVEKVRQLINE 549 (605)
Q Consensus 499 ~~g~~~~A~~~~~~~~~~------~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 549 (605)
..|+.++|+..|++.++. .|. + .......|++|.++.++|.+
T Consensus 20 E~g~~e~Al~~Y~~gi~~l~eg~ai~~-~--------~~~~~~~w~~ar~~~~Km~~ 67 (79)
T cd02679 20 EWGDKEQALAHYRKGLRELEEGIAVPV-P--------SAGVGSQWERARRLQQKMKT 67 (79)
T ss_pred hcCCHHHHHHHHHHHHHHHHHHcCCCC-C--------cccccHHHHHHHHHHHHHHH
Confidence 457778888888877764 231 1 23344567777777777754
No 497
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=29.68 E-value=95 Score=29.44 Aligned_cols=117 Identities=13% Similarity=0.050 Sum_probs=66.8
Q ss_pred cccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCC-CCCc-chHHHHHHHHHHcCCHHHHHHH
Q 007400 329 SIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDN-KENS-MLWNTMISALTQHGYDEQAIRL 406 (605)
Q Consensus 329 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~-~~~~~l~~~~~~~g~~~~a~~~ 406 (605)
..|.++.|.+.+...++.+ ++....|..-.+++.+.++...|++-++.... .||. ..|-.--.+....|++++|...
T Consensus 126 n~G~~~~ai~~~t~ai~ln-p~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~d 204 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIELN-PPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHD 204 (377)
T ss_pred cCcchhhhhcccccccccC-CchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHH
Confidence 3455666666666665554 45555566666677777777777776664332 2332 2344444555667888888888
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHchHh
Q 007400 407 FHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHD 448 (605)
Q Consensus 407 ~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 448 (605)
++...+.+..+... ..+-...-..+..++-...+++..++
T Consensus 205 l~~a~kld~dE~~~--a~lKeV~p~a~ki~e~~~k~er~~~e 244 (377)
T KOG1308|consen 205 LALACKLDYDEANS--ATLKEVFPNAGKIEEHRRKYERAREE 244 (377)
T ss_pred HHHHHhccccHHHH--HHHHHhccchhhhhhchhHHHHHHHH
Confidence 88888866554332 22223333444444444444444433
No 498
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=29.58 E-value=5.1e+02 Score=24.79 Aligned_cols=105 Identities=11% Similarity=-0.002 Sum_probs=68.0
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHh---cCCchHHHHHHHHHHhCCCcCCCceeE
Q 007400 484 EHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSA---LGKGRLVEKVRQLINERQFKKEQAISW 560 (605)
Q Consensus 484 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~~~~~~~~s~ 560 (605)
+.+...+..++..+.+..+.+...+-+++++...|.+...|..+++.... .-.+++...+|.+..+.-.....+.
T Consensus 62 p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~-- 139 (321)
T PF08424_consen 62 PDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGR-- 139 (321)
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccc--
Confidence 34566777788888888888998999999999999999988887776655 2346677777776654311111100
Q ss_pred EEECCEEEEEEeCCCCCc-chHHHHHHHHHHHHHHhhCCCC
Q 007400 561 IEIENKVHAFSVSDSLHP-MRDVLYSVLEQLAGQMGEDAPS 600 (605)
Q Consensus 561 ~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~ 600 (605)
...+..-+ -...+...+.++..-+.++|++
T Consensus 140 ----------~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~ 170 (321)
T PF08424_consen 140 ----------MTSHPDLPELEEFMLYVFLRLCRFLRQAGYT 170 (321)
T ss_pred ----------cccccchhhHHHHHHHHHHHHHHHHHHCCch
Confidence 01111122 2334466677777888888875
No 499
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=29.58 E-value=3.7e+02 Score=23.17 Aligned_cols=37 Identities=24% Similarity=0.394 Sum_probs=22.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHH
Q 007400 494 HGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIY 531 (605)
Q Consensus 494 ~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 531 (605)
+..|.+.|.+++|.+++++..+ +|++...-..|..+-
T Consensus 118 V~VCm~~g~Fk~A~eiLkr~~~-d~~~~~~r~kL~~II 154 (200)
T cd00280 118 VAVCMENGEFKKAEEVLKRLFS-DPESQKLRMKLLMII 154 (200)
T ss_pred HHHHHhcCchHHHHHHHHHHhc-CCCchhHHHHHHHHH
Confidence 4567777777777777777776 665555433343333
No 500
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=29.55 E-value=2.3e+02 Score=23.99 Aligned_cols=37 Identities=8% Similarity=0.064 Sum_probs=18.4
Q ss_pred cchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCC
Q 007400 331 VSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGC 367 (605)
Q Consensus 331 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 367 (605)
+..-.|.++++.+.+.+...+..|.-.-++.+...|-
T Consensus 39 ~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Gl 75 (169)
T PRK11639 39 PGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGF 75 (169)
T ss_pred CCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCC
Confidence 3344555555555555544444444444455554443
Done!