Query 007400
Match_columns 605
No_of_seqs 612 out of 3672
Neff 11.4
Searched_HMMs 29240
Date Tue Mar 26 00:51:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007400.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007400hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 7.3E-40 2.5E-44 343.8 40.1 474 50-531 82-594 (597)
2 2xpi_A Anaphase-promoting comp 100.0 4.8E-39 1.6E-43 337.6 35.0 457 88-550 84-579 (597)
3 1w3b_A UDP-N-acetylglucosamine 100.0 2.7E-27 9.1E-32 234.0 38.6 371 157-536 6-388 (388)
4 1w3b_A UDP-N-acetylglucosamine 100.0 4.7E-27 1.6E-31 232.2 37.0 350 192-549 6-367 (388)
5 4g26_A Pentatricopeptide repea 100.0 5.4E-27 1.9E-31 235.1 22.0 211 168-431 8-222 (501)
6 4g26_A Pentatricopeptide repea 99.9 4.9E-26 1.7E-30 228.1 22.3 188 151-365 27-223 (501)
7 2gw1_A Mitochondrial precursor 99.9 5.5E-24 1.9E-28 218.7 30.9 423 120-550 7-478 (514)
8 2gw1_A Mitochondrial precursor 99.9 9.6E-24 3.3E-28 216.9 30.2 270 253-527 188-489 (514)
9 2y4t_A DNAJ homolog subfamily 99.9 8E-23 2.7E-27 206.2 30.0 322 185-546 26-405 (450)
10 3fp2_A TPR repeat-containing p 99.9 2.5E-22 8.4E-27 207.6 32.7 418 119-551 25-492 (537)
11 3fp2_A TPR repeat-containing p 99.9 7.3E-22 2.5E-26 204.1 32.2 432 53-525 26-500 (537)
12 2y4t_A DNAJ homolog subfamily 99.9 1.7E-21 5.8E-26 196.5 34.1 363 149-539 25-443 (450)
13 3ieg_A DNAJ homolog subfamily 99.9 1.4E-19 4.8E-24 176.3 32.7 301 220-550 3-335 (359)
14 3ieg_A DNAJ homolog subfamily 99.9 2.8E-19 9.6E-24 174.2 29.7 321 184-534 2-353 (359)
15 2xm6_A Protein corresponding t 99.8 5.2E-18 1.8E-22 172.5 36.3 366 149-533 38-452 (490)
16 1xi4_A Clathrin heavy chain; a 99.8 3.9E-16 1.3E-20 165.8 50.2 411 26-480 994-1441(1630)
17 1xi4_A Clathrin heavy chain; a 99.8 5.3E-16 1.8E-20 164.8 48.6 352 149-544 984-1339(1630)
18 1fch_A Peroxisomal targeting s 99.8 3.2E-19 1.1E-23 174.6 23.2 277 264-547 38-356 (368)
19 3hym_B Cell division cycle pro 99.8 2.1E-18 7.2E-23 165.9 28.5 253 281-537 55-321 (330)
20 2xm6_A Protein corresponding t 99.8 3.7E-17 1.3E-21 166.2 39.1 363 169-552 26-434 (490)
21 3hym_B Cell division cycle pro 99.8 2.2E-18 7.5E-23 165.7 28.4 263 280-549 20-298 (330)
22 2ooe_A Cleavage stimulation fa 99.8 2.2E-16 7.7E-21 162.1 38.9 410 118-550 12-492 (530)
23 1b89_A Protein (clathrin heavy 99.8 1.2E-17 4.2E-22 159.2 25.0 371 100-507 15-408 (449)
24 4eqf_A PEX5-related protein; a 99.8 1.9E-18 6.6E-23 168.8 19.5 259 281-546 64-352 (365)
25 3mkr_A Coatomer subunit epsilo 99.8 1.3E-16 4.5E-21 149.3 28.4 268 262-544 10-288 (291)
26 4g1t_A Interferon-induced prot 99.8 5.8E-17 2E-21 164.3 27.4 385 150-561 51-470 (472)
27 1b89_A Protein (clathrin heavy 99.8 1.7E-17 5.9E-22 158.2 21.1 287 130-481 14-308 (449)
28 3cv0_A Peroxisome targeting si 99.8 1.6E-17 5.4E-22 159.5 20.5 259 283-547 22-312 (327)
29 2ooe_A Cleavage stimulation fa 99.8 1.2E-15 4.1E-20 156.7 35.7 418 75-519 2-495 (530)
30 1fch_A Peroxisomal targeting s 99.8 3.6E-17 1.2E-21 159.9 21.3 275 266-550 16-314 (368)
31 3mkr_A Coatomer subunit epsilo 99.8 9.7E-17 3.3E-21 150.2 23.1 248 289-551 6-265 (291)
32 4eqf_A PEX5-related protein; a 99.8 7.8E-17 2.7E-21 157.3 23.2 233 316-551 64-311 (365)
33 4g1t_A Interferon-induced prot 99.7 8.6E-16 2.9E-20 155.6 28.8 381 118-528 50-471 (472)
34 2pl2_A Hypothetical conserved 99.7 4.3E-16 1.5E-20 139.3 17.3 194 349-547 2-211 (217)
35 3cv0_A Peroxisome targeting si 99.7 3.3E-16 1.1E-20 150.2 17.0 231 281-518 54-317 (327)
36 3uq3_A Heat shock protein STI1 99.7 1.9E-15 6.6E-20 139.4 20.5 224 283-550 6-236 (258)
37 3uq3_A Heat shock protein STI1 99.7 3E-15 1E-19 138.1 18.7 234 252-530 6-256 (258)
38 3e4b_A ALGK; tetratricopeptide 99.6 1.4E-14 4.9E-19 144.7 23.0 344 156-551 9-388 (452)
39 1xnf_A Lipoprotein NLPI; TPR, 99.6 5.8E-15 2E-19 137.6 19.0 242 294-544 17-269 (275)
40 3e4b_A ALGK; tetratricopeptide 99.6 5.7E-15 2E-19 147.6 19.6 371 124-549 8-420 (452)
41 3u4t_A TPR repeat-containing p 99.6 9.2E-15 3.1E-19 136.1 19.8 245 285-535 6-269 (272)
42 3spa_A Mtrpol, DNA-directed RN 99.6 2.1E-16 7.2E-21 162.7 7.7 126 120-245 128-261 (1134)
43 1ouv_A Conserved hypothetical 99.6 1.6E-13 5.4E-18 127.7 25.7 224 281-551 5-252 (273)
44 2h6f_A Protein farnesyltransfe 99.6 2.8E-14 9.6E-19 138.0 19.9 247 281-534 96-366 (382)
45 3spa_A Mtrpol, DNA-directed RN 99.6 6.8E-16 2.3E-20 159.0 8.3 147 252-398 128-286 (1134)
46 1ouv_A Conserved hypothetical 99.6 2.3E-13 7.9E-18 126.6 24.6 225 250-519 5-254 (273)
47 3u4t_A TPR repeat-containing p 99.6 1.6E-13 5.5E-18 127.6 21.5 227 318-550 4-250 (272)
48 2ho1_A Type 4 fimbrial biogene 99.6 2.6E-13 8.9E-18 124.6 21.6 196 352-550 37-238 (252)
49 2pl2_A Hypothetical conserved 99.6 1.1E-13 3.7E-18 123.6 18.5 205 281-513 4-211 (217)
50 3vtx_A MAMA; tetratricopeptide 99.6 1.2E-13 4.3E-18 119.9 18.4 164 383-551 4-171 (184)
51 2h6f_A Protein farnesyltransfe 99.6 1.3E-13 4.4E-18 133.3 20.1 225 318-549 98-347 (382)
52 2q7f_A YRRB protein; TPR, prot 99.6 3.7E-14 1.3E-18 129.4 15.6 144 384-530 91-236 (243)
53 2ho1_A Type 4 fimbrial biogene 99.6 4.9E-13 1.7E-17 122.7 22.9 207 282-525 37-247 (252)
54 2vq2_A PILW, putative fimbrial 99.6 4.3E-13 1.5E-17 120.6 21.7 197 351-550 7-211 (225)
55 2q7f_A YRRB protein; TPR, prot 99.5 1.3E-13 4.5E-18 125.7 16.4 197 350-550 21-222 (243)
56 4abn_A Tetratricopeptide repea 99.5 8.5E-14 2.9E-18 140.0 16.1 207 334-546 85-317 (474)
57 2vq2_A PILW, putative fimbrial 99.5 1.1E-12 3.8E-17 117.9 21.9 209 282-527 8-222 (225)
58 1xnf_A Lipoprotein NLPI; TPR, 99.5 1.3E-13 4.4E-18 128.5 15.1 238 264-510 18-269 (275)
59 3sf4_A G-protein-signaling mod 99.5 2.4E-13 8.2E-18 134.6 17.9 90 255-344 13-114 (406)
60 4a1s_A PINS, partner of inscut 99.5 1.3E-13 4.4E-18 136.8 15.7 264 285-550 51-372 (411)
61 4e6h_A MRNA 3'-END-processing 99.5 7.7E-11 2.6E-15 121.6 36.5 220 299-522 326-576 (679)
62 3sf4_A G-protein-signaling mod 99.5 7.5E-13 2.6E-17 130.9 21.0 303 185-539 9-365 (406)
63 3ro2_A PINS homolog, G-protein 99.5 4.9E-13 1.7E-17 128.4 18.4 265 285-550 8-332 (338)
64 4gyw_A UDP-N-acetylglucosamine 99.5 7.5E-13 2.6E-17 138.3 16.8 162 383-549 8-173 (723)
65 4a1s_A PINS, partner of inscut 99.5 3.9E-12 1.3E-16 126.1 20.9 276 190-518 53-374 (411)
66 3vtx_A MAMA; tetratricopeptide 99.4 2.6E-12 8.9E-17 111.4 16.0 165 351-520 4-174 (184)
67 4e6h_A MRNA 3'-END-processing 99.4 7.2E-10 2.5E-14 114.4 35.9 216 334-551 326-571 (679)
68 2ond_A Cleavage stimulation fa 99.4 1.3E-11 4.6E-16 116.7 21.3 216 299-519 33-273 (308)
69 3ulq_A Response regulator aspa 99.4 2.7E-12 9.3E-17 125.8 17.0 224 325-549 111-367 (383)
70 2ond_A Cleavage stimulation fa 99.4 3.2E-11 1.1E-15 114.1 22.9 214 334-553 33-273 (308)
71 4i17_A Hypothetical protein; T 99.4 5.7E-12 2E-16 113.5 16.2 187 352-550 7-209 (228)
72 3ro2_A PINS homolog, G-protein 99.4 6.4E-12 2.2E-16 120.5 17.4 275 192-518 12-334 (338)
73 3nf1_A KLC 1, kinesin light ch 99.4 6.3E-13 2.2E-17 126.2 9.3 237 281-549 26-306 (311)
74 4abn_A Tetratricopeptide repea 99.4 7E-12 2.4E-16 126.0 17.3 179 368-551 84-288 (474)
75 1hz4_A MALT regulatory protein 99.4 2.4E-10 8.2E-15 111.5 27.3 264 286-549 18-321 (373)
76 3as5_A MAMA; tetratricopeptide 99.4 1.4E-11 4.7E-16 106.8 16.3 161 387-550 11-173 (186)
77 3ulq_A Response regulator aspa 99.4 5.4E-11 1.9E-15 116.5 22.2 204 283-516 144-368 (383)
78 3nf1_A KLC 1, kinesin light ch 99.4 9.8E-13 3.3E-17 124.9 8.1 238 251-519 27-310 (311)
79 4i17_A Hypothetical protein; T 99.3 6.1E-11 2.1E-15 106.7 19.0 206 315-532 5-225 (228)
80 3q15_A PSP28, response regulat 99.3 2.6E-10 9.1E-15 111.3 22.3 228 287-515 106-364 (378)
81 3qky_A Outer membrane assembly 99.3 1.5E-10 5E-15 106.7 18.2 206 351-597 14-248 (261)
82 3as5_A MAMA; tetratricopeptide 99.3 2.5E-10 8.4E-15 98.8 18.5 167 353-523 9-180 (186)
83 1hz4_A MALT regulatory protein 99.2 1.1E-08 3.9E-13 99.5 29.2 267 156-446 20-320 (373)
84 4gyw_A UDP-N-acetylglucosamine 99.2 1E-10 3.4E-15 122.4 13.6 163 351-518 8-176 (723)
85 2yhc_A BAMD, UPF0169 lipoprote 99.2 9.5E-10 3.3E-14 98.5 18.2 182 352-553 4-216 (225)
86 1qqe_A Vesicular transport pro 99.2 1.4E-10 4.8E-15 108.6 13.0 201 332-547 32-266 (292)
87 3q15_A PSP28, response regulat 99.2 3.1E-09 1E-13 103.7 22.8 218 260-481 110-362 (378)
88 4ga2_A E3 SUMO-protein ligase 99.2 2.4E-11 8E-16 101.0 6.5 138 394-536 7-149 (150)
89 4ga2_A E3 SUMO-protein ligase 99.2 8E-11 2.7E-15 97.8 9.7 122 425-549 3-128 (150)
90 3edt_B KLC 2, kinesin light ch 99.1 3E-10 1E-14 105.8 13.2 222 328-549 12-280 (283)
91 3qou_A Protein YBBN; thioredox 99.1 1.3E-09 4.5E-14 101.5 16.7 174 370-549 104-283 (287)
92 3qky_A Outer membrane assembly 99.1 1.9E-09 6.5E-14 99.2 17.1 204 314-539 12-250 (261)
93 3mv2_B Coatomer subunit epsilo 99.1 6.6E-09 2.2E-13 95.0 20.2 175 371-550 85-282 (310)
94 3rjv_A Putative SEL1 repeat pr 99.1 3.8E-09 1.3E-13 93.4 18.3 173 371-552 5-199 (212)
95 3mv2_B Coatomer subunit epsilo 99.1 6.3E-09 2.2E-13 95.2 20.0 182 336-525 85-291 (310)
96 2r5s_A Uncharacterized protein 99.1 7.4E-10 2.5E-14 94.9 13.1 159 386-549 8-172 (176)
97 2pzi_A Probable serine/threoni 99.1 1.1E-09 3.8E-14 115.1 15.8 168 363-536 402-583 (681)
98 3gyz_A Chaperone protein IPGC; 99.1 3.4E-10 1.2E-14 93.4 8.8 101 450-550 30-133 (151)
99 2fo7_A Synthetic consensus TPR 99.1 3.1E-09 1.1E-13 86.1 14.3 125 424-550 6-132 (136)
100 3edt_B KLC 2, kinesin light ch 99.1 1.6E-09 5.4E-14 100.8 14.0 198 319-516 45-281 (283)
101 1qqe_A Vesicular transport pro 99.1 7.8E-08 2.7E-12 89.8 25.3 200 61-282 46-271 (292)
102 2vgx_A Chaperone SYCD; alterna 99.0 1.2E-09 4E-14 90.4 10.9 107 441-550 9-118 (148)
103 3urz_A Uncharacterized protein 99.0 2.1E-09 7E-14 94.9 13.0 135 388-529 58-198 (208)
104 4gco_A Protein STI-1; structur 99.0 1.9E-09 6.5E-14 86.2 11.4 99 451-549 8-109 (126)
105 2vsy_A XCC0866; transferase, g 99.0 2.9E-09 9.8E-14 110.1 15.9 159 365-528 2-169 (568)
106 2uy1_A Cleavage stimulation fa 99.0 1.8E-07 6E-12 93.8 27.8 363 122-516 18-413 (493)
107 3urz_A Uncharacterized protein 99.0 4E-09 1.4E-13 93.1 13.4 158 387-550 7-186 (208)
108 2fo7_A Synthetic consensus TPR 99.0 1.3E-08 4.6E-13 82.3 15.2 131 386-519 3-135 (136)
109 4gco_A Protein STI-1; structur 99.0 2.8E-09 9.7E-14 85.2 10.5 114 415-531 8-125 (126)
110 2xcb_A PCRH, regulatory protei 99.0 9.2E-09 3.1E-13 84.4 12.7 101 450-550 12-115 (142)
111 2pzi_A Probable serine/threoni 98.9 1.7E-08 5.8E-13 106.2 17.5 168 328-502 402-583 (681)
112 2ifu_A Gamma-SNAP; membrane fu 98.9 8.6E-09 2.9E-13 97.2 12.8 220 295-543 4-254 (307)
113 1hh8_A P67PHOX, NCF-2, neutrop 98.9 3.5E-08 1.2E-12 87.4 16.1 128 386-520 8-154 (213)
114 2vsy_A XCC0866; transferase, g 98.9 3.1E-08 1.1E-12 102.3 17.8 147 398-549 3-156 (568)
115 3rjv_A Putative SEL1 repeat pr 98.9 7.1E-08 2.4E-12 85.2 17.5 173 336-518 5-199 (212)
116 2ifu_A Gamma-SNAP; membrane fu 98.9 1.1E-08 3.8E-13 96.4 12.5 197 329-548 3-222 (307)
117 2yhc_A BAMD, UPF0169 lipoprote 98.9 6.7E-08 2.3E-12 86.4 16.4 186 316-522 3-219 (225)
118 3u3w_A Transcriptional activat 98.8 3.6E-07 1.2E-11 85.4 21.1 161 389-549 80-265 (293)
119 3dra_A Protein farnesyltransfe 98.8 1.6E-06 5.5E-11 80.2 24.7 225 296-528 47-300 (306)
120 3dra_A Protein farnesyltransfe 98.8 3E-07 1E-11 85.1 19.4 213 331-549 47-286 (306)
121 2qfc_A PLCR protein; TPR, HTH, 98.8 1.4E-07 4.7E-12 88.3 17.2 163 386-549 77-265 (293)
122 2r5s_A Uncharacterized protein 98.8 2.5E-08 8.6E-13 85.3 11.1 157 354-515 8-172 (176)
123 3upv_A Heat shock protein STI1 98.8 4.3E-08 1.5E-12 78.4 11.8 96 455-550 4-101 (126)
124 2c2l_A CHIP, carboxy terminus 98.8 6.2E-09 2.1E-13 96.6 7.6 191 352-550 4-199 (281)
125 2e2e_A Formate-dependent nitri 98.8 1.4E-08 4.6E-13 87.1 8.9 117 431-550 22-144 (177)
126 3qou_A Protein YBBN; thioredox 98.8 1.3E-07 4.4E-12 88.0 16.2 161 317-480 117-280 (287)
127 1a17_A Serine/threonine protei 98.8 5.5E-08 1.9E-12 82.0 12.6 126 421-549 15-145 (166)
128 2lni_A Stress-induced-phosphop 98.8 6.1E-08 2.1E-12 78.2 12.1 113 421-536 18-133 (133)
129 1hh8_A P67PHOX, NCF-2, neutrop 98.8 2E-07 7E-12 82.4 16.2 123 423-550 10-150 (213)
130 4f3v_A ESX-1 secretion system 98.8 9.2E-08 3.1E-12 86.3 13.5 135 388-527 106-247 (282)
131 2vyi_A SGTA protein; chaperone 98.8 6.9E-08 2.4E-12 77.5 11.6 117 420-538 13-131 (131)
132 2uy1_A Cleavage stimulation fa 98.8 1.9E-05 6.4E-10 79.2 31.4 366 15-412 12-412 (493)
133 1p5q_A FKBP52, FK506-binding p 98.8 3.9E-08 1.3E-12 93.8 11.4 93 455-547 196-291 (336)
134 2vgx_A Chaperone SYCD; alterna 98.7 2.1E-08 7.2E-13 82.7 7.8 115 406-525 9-127 (148)
135 1na0_A Designed protein CTPR3; 98.7 1.3E-07 4.3E-12 75.2 12.3 114 420-535 10-125 (125)
136 4f3v_A ESX-1 secretion system 98.7 4.7E-08 1.6E-12 88.2 10.5 183 364-551 18-238 (282)
137 3gyz_A Chaperone protein IPGC; 98.7 6.1E-08 2.1E-12 79.8 9.8 104 415-521 31-138 (151)
138 3u3w_A Transcriptional activat 98.7 1.9E-06 6.6E-11 80.4 20.8 204 304-516 33-266 (293)
139 1hxi_A PEX5, peroxisome target 98.7 6.9E-08 2.3E-12 76.4 9.2 95 457-551 19-115 (121)
140 3sz7_A HSC70 cochaperone (SGT) 98.7 4.2E-07 1.4E-11 76.5 14.0 107 419-528 11-120 (164)
141 2kck_A TPR repeat; tetratricop 98.7 1.3E-07 4.6E-12 73.4 10.1 98 455-552 6-108 (112)
142 3q49_B STIP1 homology and U bo 98.6 3.2E-07 1.1E-11 74.4 12.0 97 454-550 8-106 (137)
143 2xcb_A PCRH, regulatory protei 98.6 6.6E-08 2.3E-12 79.2 7.7 114 415-531 13-130 (142)
144 2lni_A Stress-induced-phosphop 98.6 6.4E-07 2.2E-11 72.0 13.4 97 454-550 15-113 (133)
145 4gcn_A Protein STI-1; structur 98.6 1.9E-07 6.4E-12 74.6 9.7 94 456-549 9-111 (127)
146 3gw4_A Uncharacterized protein 98.6 6.3E-07 2.2E-11 78.4 13.9 153 396-549 4-175 (203)
147 2e2e_A Formate-dependent nitri 98.6 2.5E-07 8.6E-12 79.0 10.8 126 395-525 21-153 (177)
148 2dba_A Smooth muscle cell asso 98.6 8.1E-07 2.8E-11 73.0 13.4 111 419-532 28-144 (148)
149 2qfc_A PLCR protein; TPR, HTH, 98.6 1.4E-06 4.8E-11 81.3 16.5 163 354-516 77-266 (293)
150 3upv_A Heat shock protein STI1 98.6 3.1E-07 1.1E-11 73.3 10.3 110 420-532 5-123 (126)
151 1elw_A TPR1-domain of HOP; HOP 98.6 5.7E-07 1.9E-11 70.5 11.8 94 456-549 5-100 (118)
152 3sz7_A HSC70 cochaperone (SGT) 98.6 4.3E-07 1.5E-11 76.4 11.6 95 455-549 11-107 (164)
153 1elw_A TPR1-domain of HOP; HOP 98.6 5.7E-07 1.9E-11 70.5 11.5 109 420-531 5-116 (118)
154 2fbn_A 70 kDa peptidylprolyl i 98.6 3.1E-07 1.1E-11 80.1 10.6 94 456-549 89-185 (198)
155 1na0_A Designed protein CTPR3; 98.6 1.4E-06 4.8E-11 69.0 13.5 96 455-550 9-106 (125)
156 3rkv_A Putative peptidylprolyl 98.5 6.3E-07 2.1E-11 75.2 11.6 65 486-550 62-126 (162)
157 2vyi_A SGTA protein; chaperone 98.5 1.5E-06 5.2E-11 69.4 13.3 96 455-550 12-109 (131)
158 2dba_A Smooth muscle cell asso 98.5 2.1E-06 7.2E-11 70.5 13.9 97 454-550 27-128 (148)
159 3gw4_A Uncharacterized protein 98.5 4.9E-07 1.7E-11 79.1 10.5 153 364-516 4-176 (203)
160 3q7a_A Farnesyltransferase alp 98.5 6.1E-05 2.1E-09 70.4 24.3 227 291-525 63-341 (349)
161 2xev_A YBGF; tetratricopeptide 98.5 1.1E-06 3.9E-11 70.2 11.0 91 460-550 7-105 (129)
162 3q49_B STIP1 homology and U bo 98.5 7.8E-07 2.7E-11 72.1 10.0 111 418-531 8-126 (137)
163 2hr2_A Hypothetical protein; a 98.5 7.4E-07 2.5E-11 72.4 9.2 63 488-550 58-131 (159)
164 1wao_1 Serine/threonine protei 98.4 6.7E-07 2.3E-11 89.5 10.8 118 426-546 13-135 (477)
165 1a17_A Serine/threonine protei 98.4 3.1E-06 1.1E-10 71.0 13.2 127 385-516 14-146 (166)
166 1kt0_A FKBP51, 51 kDa FK506-bi 98.4 2.2E-06 7.6E-11 85.4 13.9 95 455-549 317-414 (457)
167 1wao_1 Serine/threonine protei 98.4 9.2E-07 3.1E-11 88.5 11.1 113 394-511 16-134 (477)
168 4gcn_A Protein STI-1; structur 98.4 2E-06 6.7E-11 68.6 11.0 98 424-525 13-120 (127)
169 1p5q_A FKBP52, FK506-binding p 98.4 2E-06 6.7E-11 81.9 12.5 129 383-516 146-294 (336)
170 2fbn_A 70 kDa peptidylprolyl i 98.4 5.2E-06 1.8E-10 72.2 13.7 94 457-550 40-151 (198)
171 3q7a_A Farnesyltransferase alp 98.4 1.9E-05 6.5E-10 73.8 17.7 213 331-549 68-330 (349)
172 1hxi_A PEX5, peroxisome target 98.4 1.2E-06 4.2E-11 69.1 8.3 95 424-521 22-119 (121)
173 3dss_A Geranylgeranyl transfer 98.4 5.7E-05 2E-09 70.2 20.7 162 383-549 107-303 (331)
174 3k9i_A BH0479 protein; putativ 98.4 3.4E-07 1.2E-11 71.9 5.0 63 487-549 27-89 (117)
175 2if4_A ATFKBP42; FKBP-like, al 98.4 6.4E-07 2.2E-11 85.3 7.7 146 385-550 180-328 (338)
176 1elr_A TPR2A-domain of HOP; HO 98.4 1.7E-06 5.9E-11 69.2 9.2 96 455-550 4-108 (131)
177 1ihg_A Cyclophilin 40; ppiase 98.4 2E-06 6.7E-11 82.9 11.1 89 455-543 273-363 (370)
178 2xev_A YBGF; tetratricopeptide 98.3 4.2E-06 1.4E-10 66.8 11.1 107 425-531 8-120 (129)
179 4b4t_Q 26S proteasome regulato 98.3 1.5E-05 5.1E-10 79.1 17.1 162 387-548 58-243 (434)
180 3rkv_A Putative peptidylprolyl 98.3 1.4E-06 4.7E-11 73.1 8.2 78 455-532 63-143 (162)
181 2c2l_A CHIP, carboxy terminus 98.3 4E-06 1.4E-10 77.5 11.7 112 418-532 3-117 (281)
182 3ro3_A PINS homolog, G-protein 98.3 2.5E-06 8.7E-11 71.2 9.3 129 421-549 11-157 (164)
183 3k9i_A BH0479 protein; putativ 98.3 1E-06 3.4E-11 69.2 6.1 91 432-525 3-99 (117)
184 2hr2_A Hypothetical protein; a 98.3 1.3E-06 4.5E-11 70.9 6.7 75 457-531 59-146 (159)
185 1elr_A TPR2A-domain of HOP; HO 98.3 2.6E-06 8.8E-11 68.1 8.6 111 421-534 6-125 (131)
186 2kck_A TPR repeat; tetratricop 98.3 3.9E-06 1.3E-10 64.8 9.1 100 420-521 7-111 (112)
187 3dss_A Geranylgeranyl transfer 98.3 0.00033 1.1E-08 65.1 23.1 231 293-531 40-319 (331)
188 3ma5_A Tetratricopeptide repea 98.3 5E-06 1.7E-10 62.9 9.1 67 484-550 4-70 (100)
189 2l6j_A TPR repeat-containing p 98.2 5.4E-07 1.9E-11 69.9 3.5 93 454-546 3-103 (111)
190 1dce_A Protein (RAB geranylger 98.2 4.4E-05 1.5E-09 77.7 17.7 168 367-539 44-244 (567)
191 3ro3_A PINS homolog, G-protein 98.2 9.6E-06 3.3E-10 67.5 10.1 132 386-517 11-159 (164)
192 2if4_A ATFKBP42; FKBP-like, al 98.1 3.2E-06 1.1E-10 80.4 7.5 151 352-522 179-334 (338)
193 1kt0_A FKBP51, 51 kDa FK506-bi 98.1 1.7E-05 5.7E-10 79.0 12.9 65 487-551 317-381 (457)
194 1ihg_A Cyclophilin 40; ppiase 98.1 1.3E-05 4.4E-10 77.2 11.4 113 420-550 224-336 (370)
195 1na3_A Designed protein CTPR2; 98.1 1.5E-05 5.1E-10 58.8 9.2 81 455-535 9-91 (91)
196 3bee_A Putative YFRE protein; 98.1 3.2E-05 1.1E-09 57.0 10.6 69 484-552 3-74 (93)
197 4b4t_Q 26S proteasome regulato 98.1 4.4E-05 1.5E-09 75.6 15.1 159 391-549 11-203 (434)
198 2kat_A Uncharacterized protein 98.1 1E-05 3.6E-10 63.0 7.8 77 474-550 4-82 (115)
199 3n71_A Histone lysine methyltr 98.1 9.4E-06 3.2E-10 80.6 8.9 123 429-551 319-465 (490)
200 1zu2_A Mitochondrial import re 98.0 5.2E-06 1.8E-10 67.2 4.4 82 469-550 16-120 (158)
201 1klx_A Cysteine rich protein B 97.9 8.5E-05 2.9E-09 59.9 10.9 89 461-551 31-127 (138)
202 2l6j_A TPR repeat-containing p 97.9 4.3E-05 1.5E-09 58.8 8.2 65 486-550 3-67 (111)
203 1pc2_A Mitochondria fission pr 97.9 8.8E-05 3E-09 59.3 9.5 91 484-600 29-124 (152)
204 3n71_A Histone lysine methyltr 97.8 2.4E-05 8.1E-10 77.7 7.0 116 463-596 317-450 (490)
205 1na3_A Designed protein CTPR2; 97.8 0.00013 4.4E-09 53.6 9.6 65 486-550 8-72 (91)
206 1zu2_A Mitochondrial import re 97.8 2.3E-05 7.8E-10 63.5 5.3 123 395-550 13-147 (158)
207 1dce_A Protein (RAB geranylger 97.8 0.00026 8.9E-09 72.1 13.5 148 398-550 43-221 (567)
208 3qwp_A SET and MYND domain-con 97.7 0.00023 7.9E-09 69.5 12.6 117 462-596 294-428 (429)
209 2kat_A Uncharacterized protein 97.7 0.00012 4.1E-09 56.8 8.6 79 438-519 4-85 (115)
210 3lvg_A Clathrin heavy chain 1; 97.6 2E-06 6.7E-11 81.4 -3.5 393 120-539 55-514 (624)
211 1klx_A Cysteine rich protein B 97.6 0.00087 3E-08 53.9 12.3 112 397-517 8-127 (138)
212 2kc7_A BFR218_protein; tetratr 97.6 0.0003 1E-08 52.6 8.9 63 462-524 7-72 (99)
213 3ly7_A Transcriptional activat 97.6 0.0022 7.5E-08 59.8 15.9 46 383-430 193-244 (372)
214 3qww_A SET and MYND domain-con 97.5 5.1E-05 1.8E-09 74.0 4.1 103 468-588 311-431 (433)
215 2kc7_A BFR218_protein; tetratr 97.5 0.00079 2.7E-08 50.3 9.4 55 495-549 8-63 (99)
216 3ma5_A Tetratricopeptide repea 97.4 0.0005 1.7E-08 51.6 7.8 62 383-446 6-68 (100)
217 3ly7_A Transcriptional activat 97.4 0.00082 2.8E-08 62.7 10.6 132 416-551 191-340 (372)
218 1wy6_A Hypothetical protein ST 97.4 0.023 7.7E-07 43.5 16.1 148 387-553 8-157 (172)
219 3qww_A SET and MYND domain-con 97.3 0.0011 3.6E-08 64.7 10.2 95 431-525 310-425 (433)
220 3lvg_A Clathrin heavy chain 1; 97.2 0.00069 2.4E-08 64.5 7.8 226 29-273 66-326 (624)
221 1nzn_A CGI-135 protein, fissio 97.2 0.0015 5.1E-08 50.2 8.0 65 485-549 33-102 (126)
222 1y8m_A FIS1; mitochondria, unk 97.2 0.0095 3.3E-07 46.5 12.3 91 484-600 36-130 (144)
223 3qwp_A SET and MYND domain-con 97.0 0.0029 1E-07 61.7 10.1 100 427-526 295-415 (429)
224 2v5f_A Prolyl 4-hydroxylase su 97.0 0.005 1.7E-07 46.4 9.4 73 456-528 6-87 (104)
225 1pc2_A Mitochondria fission pr 96.9 0.0042 1.4E-07 49.6 8.2 90 435-526 14-110 (152)
226 3mkq_A Coatomer beta'-subunit; 96.8 0.043 1.5E-06 59.0 18.9 45 363-410 663-707 (814)
227 3mkq_A Coatomer beta'-subunit; 96.7 0.26 8.8E-06 52.9 23.8 128 224-376 633-760 (814)
228 3u64_A Protein TP_0956; tetrat 96.7 0.0051 1.8E-07 54.9 8.3 85 472-556 180-275 (301)
229 3bee_A Putative YFRE protein; 96.7 0.018 6.2E-07 42.1 10.0 67 453-519 4-75 (93)
230 3o48_A Mitochondria fission 1 96.6 0.01 3.5E-07 45.6 8.1 66 484-549 37-106 (134)
231 1qsa_A Protein (soluble lytic 96.4 1 3.4E-05 45.9 26.7 114 398-515 228-347 (618)
232 4ady_A RPN2, 26S proteasome re 96.4 1.3 4.5E-05 46.9 28.2 261 230-497 384-671 (963)
233 1nzn_A CGI-135 protein, fissio 96.2 0.079 2.7E-06 40.6 11.1 92 434-527 16-114 (126)
234 2v5f_A Prolyl 4-hydroxylase su 96.0 0.026 9E-07 42.3 7.9 66 485-550 3-75 (104)
235 3mkq_B Coatomer subunit alpha; 96.0 0.37 1.3E-05 39.5 15.0 98 265-379 19-116 (177)
236 4gns_B Protein CSD3, chitin bi 95.7 0.041 1.4E-06 57.0 9.9 57 492-548 342-398 (754)
237 4h7y_A Dual specificity protei 95.5 0.074 2.5E-06 41.8 8.3 100 418-519 12-126 (161)
238 3u64_A Protein TP_0956; tetrat 95.1 0.62 2.1E-05 41.7 14.1 125 100-226 133-283 (301)
239 4h7y_A Dual specificity protei 94.8 0.1 3.4E-06 41.1 7.2 50 501-550 74-123 (161)
240 3mkq_B Coatomer subunit alpha; 94.4 1.7 6E-05 35.6 16.3 47 361-410 14-60 (177)
241 3lpz_A GET4 (YOR164C homolog); 93.9 3.8 0.00013 37.6 22.3 167 121-309 37-214 (336)
242 3ffl_A Anaphase-promoting comp 93.8 0.59 2E-05 37.6 9.9 62 385-446 21-90 (167)
243 1wy6_A Hypothetical protein ST 93.5 2 6.8E-05 33.1 14.6 61 385-446 92-152 (172)
244 1y8m_A FIS1; mitochondria, unk 93.5 1.3 4.3E-05 34.6 11.0 74 452-525 36-115 (144)
245 3ffl_A Anaphase-promoting comp 93.4 0.58 2E-05 37.7 9.2 26 522-547 123-148 (167)
246 3ltm_A Alpha-REP4; protein eng 93.2 3.6 0.00012 35.1 16.7 72 255-330 130-201 (211)
247 2wpv_A GET4, UPF0363 protein Y 92.8 5.5 0.00019 36.3 20.7 131 121-262 35-176 (312)
248 2ff4_A Probable regulatory pro 92.5 0.29 9.8E-06 46.9 7.7 68 490-557 174-246 (388)
249 3o48_A Mitochondria fission 1 92.4 0.99 3.4E-05 34.7 8.9 75 452-526 37-117 (134)
250 4b4t_P 26S proteasome regulato 91.6 10 0.00036 36.8 21.6 185 296-481 30-244 (445)
251 3ltj_A Alpharep-4; protein eng 91.2 6.1 0.00021 33.2 17.2 60 250-310 120-179 (201)
252 2wpv_A GET4, UPF0363 protein Y 91.0 9.1 0.00031 34.9 19.8 165 255-446 37-215 (312)
253 4b4t_P 26S proteasome regulato 90.3 7.2 0.00024 38.0 15.1 186 331-516 30-247 (445)
254 3ltm_A Alpha-REP4; protein eng 90.2 7.9 0.00027 32.9 18.8 132 227-366 71-202 (211)
255 3txn_A 26S proteasome regulato 89.3 11 0.00037 35.8 14.9 56 425-480 105-164 (394)
256 2uwj_G Type III export protein 88.8 5.1 0.00017 28.8 9.6 60 259-321 47-106 (115)
257 3ltj_A Alpharep-4; protein eng 88.8 9.7 0.00033 32.0 18.2 131 228-366 67-197 (201)
258 3lpz_A GET4 (YOR164C homolog); 88.6 15 0.0005 33.8 20.1 139 126-290 19-175 (336)
259 4gns_B Protein CSD3, chitin bi 88.5 7.3 0.00025 40.5 14.1 52 392-445 345-397 (754)
260 2p58_C Putative type III secre 88.4 5.5 0.00019 28.6 9.9 59 259-320 48-106 (116)
261 2ff4_A Probable regulatory pro 88.3 3 0.0001 39.8 10.7 70 387-458 174-248 (388)
262 1zbp_A Hypothetical protein VP 87.5 6.2 0.00021 34.8 10.9 125 393-525 6-138 (273)
263 4fhn_B Nucleoporin NUP120; pro 86.8 8.6 0.0003 42.8 14.6 60 422-481 902-964 (1139)
264 4fhn_B Nucleoporin NUP120; pro 86.4 11 0.00037 42.0 15.1 143 389-548 817-965 (1139)
265 1v54_E Cytochrome C oxidase po 85.7 8.2 0.00028 27.9 9.8 80 16-97 7-88 (109)
266 1v54_E Cytochrome C oxidase po 85.6 4.9 0.00017 29.1 7.5 63 399-463 25-87 (109)
267 1zbp_A Hypothetical protein VP 84.0 2.1 7.3E-05 37.6 6.4 58 463-520 5-64 (273)
268 4ady_A RPN2, 26S proteasome re 83.9 49 0.0017 35.3 39.6 251 261-515 384-657 (963)
269 3esl_A Checkpoint serine/threo 81.9 21 0.00074 29.8 13.1 51 500-550 92-144 (202)
270 1oyz_A Hypothetical protein YI 79.0 35 0.0012 30.3 21.6 80 218-297 140-221 (280)
271 2y69_E Cytochrome C oxidase su 78.3 21 0.00072 27.5 9.8 63 33-97 69-131 (152)
272 2y69_E Cytochrome C oxidase su 77.9 12 0.0004 28.9 7.5 60 402-463 71-130 (152)
273 1oyz_A Hypothetical protein YI 77.7 38 0.0013 30.1 19.4 22 390-412 241-262 (280)
274 2uwj_G Type III export protein 75.9 19 0.00067 25.9 8.6 71 67-142 21-91 (115)
275 2p58_C Putative type III secre 75.0 21 0.00071 25.8 9.6 74 67-145 22-95 (116)
276 1qsa_A Protein (soluble lytic 72.8 86 0.0029 31.9 35.8 456 53-554 8-483 (618)
277 4b4t_R RPN7, 26S proteasome re 71.9 13 0.00045 35.9 8.7 97 421-517 133-238 (429)
278 3kae_A CDC27, possible protein 70.2 30 0.001 27.9 8.4 80 465-547 43-140 (242)
279 4a1g_A Mitotic checkpoint seri 69.9 33 0.0011 27.2 8.8 45 506-550 84-130 (152)
280 4b4t_S RPN3, 26S proteasome re 69.4 14 0.00049 36.1 8.1 62 457-518 233-301 (523)
281 2wvi_A Mitotic checkpoint seri 68.2 39 0.0013 27.2 9.1 44 506-549 79-124 (164)
282 4b4t_R RPN7, 26S proteasome re 66.0 19 0.00065 34.8 8.4 96 353-448 132-237 (429)
283 2nsz_A Programmed cell death p 63.8 40 0.0014 25.9 8.2 65 255-319 11-80 (129)
284 3txn_A 26S proteasome regulato 59.6 1.2E+02 0.0041 28.7 22.5 290 222-552 21-345 (394)
285 2r9g_A AAA ATPase, central reg 58.4 63 0.0021 26.9 8.6 63 287-350 16-86 (204)
286 3esl_A Checkpoint serine/threo 58.1 45 0.0015 27.8 7.9 50 66-115 93-142 (202)
287 2ijq_A Hypothetical protein; s 57.1 36 0.0012 27.3 6.9 62 19-80 34-103 (161)
288 3eiq_C Programmed cell death p 55.5 1.3E+02 0.0045 27.9 15.6 71 254-324 220-295 (358)
289 2ion_A PDCD4, programmed cell 54.9 38 0.0013 26.9 6.9 64 255-318 13-81 (152)
290 3bqo_A Telomeric repeat-bindin 54.1 79 0.0027 26.2 8.4 69 472-540 95-170 (211)
291 1ya0_A SMG-7 transcript varian 50.5 51 0.0017 32.4 8.4 53 493-545 158-210 (497)
292 1wdy_A 2-5A-dependent ribonucl 50.3 1.3E+02 0.0044 26.2 13.3 23 124-146 7-29 (285)
293 2pk8_A Uncharacterized protein 49.1 15 0.00052 25.6 3.0 24 579-602 14-37 (103)
294 1zl8_A LIN-7; heterodimer, alp 48.3 44 0.0015 20.3 4.5 46 31-78 7-52 (53)
295 4gq2_M Nucleoporin NUP120; bet 47.7 1.1E+02 0.0036 33.2 11.1 47 488-534 898-949 (950)
296 2d2s_A Exocyst complex compone 45.9 79 0.0027 27.3 8.0 86 157-245 25-116 (235)
297 2d2s_A Exocyst complex compone 45.1 1.1E+02 0.0037 26.5 8.7 23 288-310 24-46 (235)
298 3ctd_A Putative ATPase, AAA fa 44.2 1.3E+02 0.0044 25.3 8.4 66 284-349 34-107 (213)
299 2zu6_B Programmed cell death p 44.1 1.8E+02 0.0063 26.2 11.9 196 122-318 6-238 (307)
300 3bge_A Predicted ATPase; struc 44.1 97 0.0033 25.7 7.6 45 288-332 10-57 (201)
301 3jxi_A Vanilloid receptor-rela 43.9 58 0.002 28.3 7.3 53 26-78 11-72 (260)
302 1ug3_A EIF4GI, eukaryotic prot 41.8 1.7E+02 0.0059 26.9 10.2 28 91-118 14-41 (339)
303 2wvi_A Mitotic checkpoint seri 41.4 1.4E+02 0.0047 24.0 9.4 67 451-517 59-126 (164)
304 2nsz_A Programmed cell death p 40.6 83 0.0028 24.0 6.6 64 355-418 10-77 (129)
305 3jxi_A Vanilloid receptor-rela 39.1 1.4E+02 0.0049 25.6 9.1 55 157-211 9-72 (260)
306 3bu8_A Telomeric repeat-bindin 39.0 1.2E+02 0.0041 25.5 7.4 47 435-481 88-140 (235)
307 4a1g_A Mitotic checkpoint seri 36.9 1.5E+02 0.0053 23.3 9.5 65 452-516 65-130 (152)
308 1ug3_A EIF4GI, eukaryotic prot 35.7 1.5E+02 0.005 27.4 8.7 26 224-249 15-40 (339)
309 4aez_C MAD3, mitotic spindle c 35.2 1.7E+02 0.0057 24.9 8.0 46 70-115 132-177 (223)
310 3i5p_A Nucleoporin NUP170; hel 34.5 3.5E+02 0.012 26.7 11.6 68 484-551 175-247 (525)
311 4b4t_S RPN3, 26S proteasome re 34.1 3.5E+02 0.012 26.6 15.3 62 352-413 231-299 (523)
312 2fe3_A Peroxide operon regulat 33.6 97 0.0033 24.2 6.2 62 175-237 12-73 (145)
313 1n11_A Ankyrin; clathrin, BAND 33.1 3.2E+02 0.011 25.8 13.0 110 28-145 22-136 (437)
314 2fu4_A Ferric uptake regulatio 32.7 1.2E+02 0.004 20.6 6.7 62 174-236 6-68 (83)
315 3ygs_P Procaspase 9; apoptosis 32.7 35 0.0012 24.5 3.1 31 103-133 52-82 (97)
316 2ion_A PDCD4, programmed cell 32.3 74 0.0025 25.2 5.2 64 355-418 12-79 (152)
317 4gq2_M Nucleoporin NUP120; bet 32.1 2.8E+02 0.0097 29.9 11.4 127 125-265 816-950 (950)
318 1mzb_A Ferric uptake regulatio 31.7 1.1E+02 0.0037 23.5 6.1 62 41-104 7-69 (136)
319 3ljn_A Hypothetical protein; a 31.7 2.1E+02 0.0072 26.3 9.4 19 292-310 91-109 (364)
320 3kea_A K1L; tropism, ANK repea 31.6 1.5E+02 0.0051 26.2 8.0 15 130-144 103-117 (285)
321 3hra_A Ankyrin repeat family p 30.7 2.1E+02 0.0073 23.1 8.5 17 129-145 12-28 (201)
322 2w57_A Ferric uptake regulatio 30.2 1.1E+02 0.0037 24.1 5.9 63 40-104 5-68 (150)
323 3ygs_P Procaspase 9; apoptosis 29.6 74 0.0025 22.8 4.4 36 235-270 52-87 (97)
324 2cfu_A SDSA1; SDS-hydrolase, l 29.2 1.1E+02 0.0037 31.4 7.2 62 472-536 437-498 (658)
325 2xig_A Ferric uptake regulatio 28.5 1.2E+02 0.0041 23.8 5.9 63 174-237 16-78 (150)
326 3bu8_A Telomeric repeat-bindin 28.3 2.3E+02 0.0079 23.9 7.4 29 425-456 120-148 (235)
327 4ets_A Ferric uptake regulatio 27.6 2.1E+02 0.0071 22.8 7.3 70 167-237 14-86 (162)
328 4ets_A Ferric uptake regulatio 27.3 95 0.0033 24.9 5.2 64 137-200 19-84 (162)
329 2fe3_A Peroxide operon regulat 27.2 1.5E+02 0.0051 23.1 6.3 59 308-367 13-71 (145)
330 2r9g_A AAA ATPase, central reg 27.0 2.7E+02 0.0093 23.1 9.5 68 149-217 10-85 (204)
331 2o03_A Probable zinc uptake re 25.7 1.2E+02 0.004 23.2 5.2 44 156-199 16-59 (131)
332 1wdy_A 2-5A-dependent ribonucl 25.6 3.2E+02 0.011 23.5 12.2 112 26-146 11-129 (285)
333 2p1h_A APAF-1, apoptotic prote 24.6 1.8E+02 0.0063 20.3 6.3 33 102-134 50-82 (94)
334 1k1a_A B-cell lymphoma 3-encod 24.6 3.1E+02 0.011 22.9 9.2 84 27-114 16-102 (241)
335 3hra_A Ankyrin repeat family p 24.0 2.7E+02 0.0092 22.5 7.9 83 26-113 11-94 (201)
336 2fu4_A Ferric uptake regulatio 23.6 1.7E+02 0.0059 19.7 7.1 60 307-367 7-67 (83)
337 3eyy_A Putative iron uptake re 23.2 1.3E+02 0.0044 23.4 5.2 60 175-236 9-68 (145)
338 3ctd_A Putative ATPase, AAA fa 23.2 3.3E+02 0.011 22.8 9.1 70 148-217 30-107 (213)
339 2xig_A Ferric uptake regulatio 23.0 2.2E+02 0.0076 22.2 6.5 59 308-367 18-76 (150)
340 3kea_A K1L; tropism, ANK repea 22.8 2.4E+02 0.0083 24.8 7.7 13 232-244 104-116 (285)
341 2b7e_A PRE-mRNA processing pro 22.6 80 0.0028 20.2 2.9 30 33-62 2-31 (59)
342 2pnn_A Transient receptor pote 22.3 2.5E+02 0.0085 24.3 7.7 55 157-211 17-80 (273)
343 1mzb_A Ferric uptake regulatio 22.0 2.5E+02 0.0084 21.4 6.5 62 175-237 8-70 (136)
344 2w57_A Ferric uptake regulatio 21.6 2.6E+02 0.0089 21.8 6.7 63 174-237 6-69 (150)
345 3mwm_A ZUR, putative metal upt 21.2 1.1E+02 0.0036 23.7 4.2 44 193-236 21-64 (139)
346 3l6a_A Eukaryotic translation 21.2 2.8E+02 0.0096 25.8 7.8 124 123-246 16-148 (364)
347 4aez_C MAD3, mitotic spindle c 20.8 3.9E+02 0.013 22.7 10.2 49 468-516 130-179 (223)
348 1n11_A Ankyrin; clathrin, BAND 20.7 5.3E+02 0.018 24.2 15.2 110 59-173 18-133 (437)
349 1s6c_A KV4 potassium channel-i 20.6 3.2E+02 0.011 21.6 10.1 24 186-209 157-180 (183)
350 1k1a_A B-cell lymphoma 3-encod 20.6 3.7E+02 0.013 22.4 10.3 28 157-184 13-40 (241)
351 2yru_A Steroid receptor RNA ac 20.1 2E+02 0.0069 21.5 5.2 44 38-81 47-90 (118)
352 2o03_A Probable zinc uptake re 20.0 1.9E+02 0.0065 21.9 5.5 37 30-66 23-59 (131)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=7.3e-40 Score=343.82 Aligned_cols=474 Identities=9% Similarity=-0.011 Sum_probs=310.6
Q ss_pred CChhhHHHHHHHhhhcCChhHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCChhHHHHHhccCC--CCCchHHHHHHH
Q 007400 50 LPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIP--VKNLFSYNNMLS 127 (605)
Q Consensus 50 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~--~~~~~~~~~li~ 127 (605)
++...|+.++..|.+.|++++|..+++.+....+ +.. ++..++.+|.+.|++++|..+|+++. .+++.+++.++.
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p--~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~ 158 (597)
T 2xpi_A 82 SREDYLRLWRHDALMQQQYKCAAFVGEKVLDITG--NPN-DAFWLAQVYCCTGDYARAKCLLTKEDLYNRSSACRYLAAF 158 (597)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHC--CHH-HHHHHHHHHHHTTCHHHHHHHHHHTCGGGTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCchHHHHHHHHHHhhCC--Cch-HHHHHHHHHHHcCcHHHHHHHHHHHhccccchhHHHHHHH
Confidence 4677888888999899999999999988886553 334 67788888999999999999998884 467888889999
Q ss_pred HHHccCChHHHHHHHhhcCCC-------------------CceeHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-hhh
Q 007400 128 GYANLGMMKHARNLFDNMAER-------------------DVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCN-EFS 187 (605)
Q Consensus 128 ~~~~~~~~~~A~~~~~~~~~~-------------------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~ 187 (605)
+|.+.|++++|.++|+++... +..+|+.++.+|.+.|++++|.++|++|.+.+ |+ ...
T Consensus 159 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~ 236 (597)
T 2xpi_A 159 CLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVD--AKCYEA 236 (597)
T ss_dssp HHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHH
T ss_pred HHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--chhhHH
Confidence 999999999999999854432 36678888888888888888888888887643 33 334
Q ss_pred HHHHHHHHhccCChHHHH--HH-HHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhcCC--CCcchHHHHHHHHH
Q 007400 188 FAGILTICVKLEELKLTR--QV-HGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDA--RDVLTWTTMVSGYA 262 (605)
Q Consensus 188 ~~~ll~~~~~~~~~~~a~--~~-~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~li~~~~ 262 (605)
+..+...+...+..+.+. .+ +..+...+..+...+|+.++..|.+.|++++|.++|+++.. ++..+|..++..|.
T Consensus 237 ~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~ 316 (597)
T 2xpi_A 237 FDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLF 316 (597)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHH
T ss_pred HHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHH
Confidence 444444333332222111 11 33333333444445566666677777777777777777665 46666666666677
Q ss_pred hcCChHHHHHHHhhCCC---CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhcccchHHHHHH
Q 007400 263 KLGDMESASKLFNEMPE---KNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQV 339 (605)
Q Consensus 263 ~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~ 339 (605)
+.|++++|..+|+++.+ .+..+++.++.++.+.|++++|..+++++.+.. +.+..++..++..|.+.|++++|..+
T Consensus 317 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~ 395 (597)
T 2xpi_A 317 VRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRY 395 (597)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHH
Confidence 77777777666666542 245566666666666677777766666666432 34555666666666666666666666
Q ss_pred HHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCC--CCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 007400 340 HGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDN--KENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKP 417 (605)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p 417 (605)
|+++.+.. +.+..+++.++.+|.+.|++++|.++|+.+.. +.+..+|+.++.+|.+.|++++|.++|+++.+.. +.
T Consensus 396 ~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~ 473 (597)
T 2xpi_A 396 FSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QY 473 (597)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CC
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CC
Confidence 66666543 34455666666666666666666666665431 2255666666666666666666666666666532 22
Q ss_pred CHHHHHHHHHHHhccCcHHHHHHHHHHchHhh---CCCCC--HHHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHH
Q 007400 418 DKITLAVILNACTHSGLVQEGLTYFESMTHDL---GIIPN--QEHHACLIELLAQAGCSDQLMNQLEKMP--YEHDSYLW 490 (605)
Q Consensus 418 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~ 490 (605)
+..+|..++.+|.+.|++++|..+|+++.... +..|+ ..++..++.+|.+.|++++|.+.++++. .+.+..+|
T Consensus 474 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 553 (597)
T 2xpi_A 474 DPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVH 553 (597)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHH
T ss_pred ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHH
Confidence 45566666666666666666666666665221 44555 5566666666666666666666666541 23456666
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHH
Q 007400 491 NALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIY 531 (605)
Q Consensus 491 ~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 531 (605)
..++.+|...|++++|.+.|+++++.+|+++..+..++.+|
T Consensus 554 ~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~ 594 (597)
T 2xpi_A 554 TAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRAL 594 (597)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTT
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Confidence 66666666666666666666666666666666666666555
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=4.8e-39 Score=337.60 Aligned_cols=457 Identities=10% Similarity=0.003 Sum_probs=391.0
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHhccCC--CCCchHHHHHHHHHHccCChHHHHHHHhhcC--CCCceeHHHHHHHHHhc
Q 007400 88 TFLSNHLISMYFKCGSDVDARKVFDKIP--VKNLFSYNNMLSGYANLGMMKHARNLFDNMA--ERDVVSWNTMIIGYAKS 163 (605)
Q Consensus 88 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~ 163 (605)
...++.++..|.+.|++++|..+|+++. .|+..++..++.+|.+.|++++|..+|+.+. .++..+++.++.+|.+.
T Consensus 84 ~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~ 163 (597)
T 2xpi_A 84 EDYLRLWRHDALMQQQYKCAAFVGEKVLDITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLYNRSSACRYLAAFCLVKL 163 (597)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGGGTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHccCchHHHHHHHHHHhhCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhccccchhHHHHHHHHHHHH
Confidence 3388999999999999999999999986 4777889999999999999999999999984 57889999999999999
Q ss_pred CChHHHHHHHHHHHh-C--------------CCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHH
Q 007400 164 GAVEEGLKFYKVLRR-F--------------SISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVD 228 (605)
Q Consensus 164 ~~~~~a~~~~~~m~~-~--------------~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 228 (605)
|++++|.++|+++.. . +.+++..+|+.++.+|.+.|++++|...|+++.+.++. +...+..+..
T Consensus 164 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~ 242 (597)
T 2xpi_A 164 YDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAK-CYEAFDQLVS 242 (597)
T ss_dssp TCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred hhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCch-hhHHHHHHHH
Confidence 999999999995322 1 23345789999999999999999999999999987643 5556666665
Q ss_pred HHHhcCChHHHHHH---HhhcCCC----CcchHHHHHHHHHhcCChHHHHHHHhhCCC--CChhhHHHHHHHHHhCCChH
Q 007400 229 AYAKCGELSDARRL---FDETDAR----DVLTWTTMVSGYAKLGDMESASKLFNEMPE--KNPVSWTTLIAGYTRNGLGQ 299 (605)
Q Consensus 229 ~~~~~g~~~~a~~~---~~~~~~~----~~~~~~~li~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~ 299 (605)
.+...+..+.+... +..+... ....|+.++..|.+.|++++|.++|+++.+ ++..+|+.++..|.+.|+++
T Consensus 243 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 322 (597)
T 2xpi_A 243 NHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFI 322 (597)
T ss_dssp TTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHH
T ss_pred hhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHH
Confidence 55443332222111 2222222 223456667788999999999999999988 78999999999999999999
Q ss_pred HHHHHHHHHHHCCCCCChHHHHHHHHHHhcccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcC
Q 007400 300 KALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTD 379 (605)
Q Consensus 300 ~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 379 (605)
+|+++|+++.+.+ +.+..++..++.++.+.|++++|..+++.+.+.. +.+..++..++.+|.+.|++++|.++|+.+.
T Consensus 323 ~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 400 (597)
T 2xpi_A 323 DVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSS 400 (597)
T ss_dssp HHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 9999999999865 4477889999999999999999999999999765 6778899999999999999999999999865
Q ss_pred C--CCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHchHhhCCCCCHHH
Q 007400 380 N--KENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEH 457 (605)
Q Consensus 380 ~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~ 457 (605)
. +.+..+|+.++.+|.+.|++++|+++|+++.+.+ +.+..++..++.+|.+.|++++|..+|+++... .+.+..+
T Consensus 401 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~ 477 (597)
T 2xpi_A 401 TMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYAL--FQYDPLL 477 (597)
T ss_dssp HHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCCCHHH
T ss_pred HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHH
Confidence 2 3367899999999999999999999999999853 347789999999999999999999999999832 2335889
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhC-------CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHH
Q 007400 458 HACLIELLAQAGCSDQLMNQLEKM-------PYEHD--SYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLS 528 (605)
Q Consensus 458 ~~~l~~~~~~~g~~~~A~~~~~~~-------~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 528 (605)
|..++.+|.+.|++++|.++|+++ +..|+ ..+|..++.+|.+.|++++|.+.++++++..|+++.+|..++
T Consensus 478 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 557 (597)
T 2xpi_A 478 LNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIA 557 (597)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHH
Confidence 999999999999999999999987 33566 789999999999999999999999999999999999999999
Q ss_pred HHHHhcCCchHHHHHHHHHHhC
Q 007400 529 SIYSALGKGRLVEKVRQLINER 550 (605)
Q Consensus 529 ~~~~~~g~~~~a~~~~~~~~~~ 550 (605)
.+|.+.|++++|.++++++.+.
T Consensus 558 ~~~~~~g~~~~A~~~~~~~l~~ 579 (597)
T 2xpi_A 558 LVYLHKKIPGLAITHLHESLAI 579 (597)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHhc
Confidence 9999999999999999999874
No 3
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.97 E-value=2.7e-27 Score=233.97 Aligned_cols=371 Identities=11% Similarity=0.079 Sum_probs=281.0
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCC-hhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCC
Q 007400 157 IIGYAKSGAVEEGLKFYKVLRRFSISCN-EFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGE 235 (605)
Q Consensus 157 i~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 235 (605)
...+.+.|++++|.+.++.+.+. .|+ ...+..+...+...|++++|...++...+.. +.+..+|..+..+|.+.|+
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~ 82 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQ--EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCC
Confidence 34455566666666666666552 233 3344444455566666666666666666553 2355666666666666666
Q ss_pred hHHHHHHHhhcCC--C-CcchHHHHHHHHHhcCChHHHHHHHhhCCC--C-ChhhHHHHHHHHHhCCChHHHHHHHHHHH
Q 007400 236 LSDARRLFDETDA--R-DVLTWTTMVSGYAKLGDMESASKLFNEMPE--K-NPVSWTTLIAGYTRNGLGQKALELFTRMM 309 (605)
Q Consensus 236 ~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 309 (605)
+++|...|+++.. | +..+|..+...+...|++++|...|+++.+ | +...+..+...+...|++++|++.|+++.
T Consensus 83 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 162 (388)
T 1w3b_A 83 LQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAI 162 (388)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 6666666665542 2 334566666666666666666677766543 3 44567778888888899999999998888
Q ss_pred HCCCCCChHHHHHHHHHHhcccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcC--CCCCcchH
Q 007400 310 ILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTD--NKENSMLW 387 (605)
Q Consensus 310 ~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~ 387 (605)
... +.+..++..+...+...|++++|...++++.+.+ +.+...+..+...+...|++++|...|+... .+.+..++
T Consensus 163 ~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 240 (388)
T 1w3b_A 163 ETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVH 240 (388)
T ss_dssp HHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHH
T ss_pred HhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHH
Confidence 752 3456778888888889999999999999988876 5567788888899999999999999988654 22257788
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHchHhhCCCCCHHHHHHHHHHHH
Q 007400 388 NTMISALTQHGYDEQAIRLFHDMVRSSVKP-DKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLA 466 (605)
Q Consensus 388 ~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~ 466 (605)
..++..+...|++++|+..|+++.+. .| +..++..+..++...|++++|...|+++.+. .+.+..++..++..+.
T Consensus 241 ~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~ 316 (388)
T 1w3b_A 241 GNLACVYYEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRL--CPTHADSLNNLANIKR 316 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHT--CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcccHHHHHHHHHHHH
Confidence 89999999999999999999999984 55 4668999999999999999999999999832 2345788999999999
Q ss_pred hcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCC
Q 007400 467 QAGCSDQLMNQLEKMP--YEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGK 536 (605)
Q Consensus 467 ~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 536 (605)
+.|++++|.+.++++. .+.+..++..++.++...|++++|...|+++++..|+++..+..++.++...|+
T Consensus 317 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 317 EQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp TTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHccC
Confidence 9999999999998863 345678899999999999999999999999999999999999999999887764
No 4
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.97 E-value=4.7e-27 Score=232.19 Aligned_cols=350 Identities=12% Similarity=0.096 Sum_probs=307.8
Q ss_pred HHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhcCCC---CcchHHHHHHHHHhcCChH
Q 007400 192 LTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDAR---DVLTWTTMVSGYAKLGDME 268 (605)
Q Consensus 192 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~~~~~ 268 (605)
...+.+.|++++|.+.+..+.+..+ .+...+..+...+...|++++|...++..... +..+|..+...+.+.|+++
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~ 84 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQEP-DNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQ 84 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHH
Confidence 4566788999999999999988754 35677788888999999999999999876643 6678999999999999999
Q ss_pred HHHHHHhhCCC--C-ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhcccchHHHHHHHHHHHH
Q 007400 269 SASKLFNEMPE--K-NPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIR 345 (605)
Q Consensus 269 ~A~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 345 (605)
+|...|+++.+ | +..+|..++.++.+.|++++|+..|+++.+.. +.+...+..+...+...|++++|...+.++.+
T Consensus 85 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 163 (388)
T 1w3b_A 85 EAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAIE 163 (388)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 99999998764 3 56689999999999999999999999998853 23345667778888899999999999999998
Q ss_pred cCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCC--CCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHH
Q 007400 346 TNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDN--KENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKP-DKITL 422 (605)
Q Consensus 346 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~ 422 (605)
.. +.+..++..+...+...|++++|...|+++.. +.+...|..+...+...|++++|+..+++... +.| +..++
T Consensus 164 ~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~ 240 (388)
T 1w3b_A 164 TQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALS--LSPNHAVVH 240 (388)
T ss_dssp HC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHH--HCTTCHHHH
T ss_pred hC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCcCCHHHH
Confidence 75 56678899999999999999999999997652 33567899999999999999999999999998 456 46789
Q ss_pred HHHHHHHhccCcHHHHHHHHHHchHhhCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHh
Q 007400 423 AVILNACTHSGLVQEGLTYFESMTHDLGIIPN-QEHHACLIELLAQAGCSDQLMNQLEKMP--YEHDSYLWNALHGVCRI 499 (605)
Q Consensus 423 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~ 499 (605)
..+..++...|++++|...|+++. ...|+ ..++..++.++.+.|++++|.+.++++. .+.+..++..++..+..
T Consensus 241 ~~l~~~~~~~g~~~~A~~~~~~al---~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 317 (388)
T 1w3b_A 241 GNLACVYYEQGLIDLAIDTYRRAI---ELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKRE 317 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHH---HTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHH---hhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHH
Confidence 999999999999999999999998 34555 7789999999999999999999999872 45688999999999999
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 007400 500 HGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINE 549 (605)
Q Consensus 500 ~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 549 (605)
.|++++|...++++++..|++..++..++.+|.+.|++++|...++++.+
T Consensus 318 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 367 (388)
T 1w3b_A 318 QGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR 367 (388)
T ss_dssp TTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999876
No 5
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.95 E-value=5.4e-27 Score=235.07 Aligned_cols=211 Identities=8% Similarity=0.062 Sum_probs=153.1
Q ss_pred HHHHHHHHHHhCCCCCChh-hHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhc
Q 007400 168 EGLKFYKVLRRFSISCNEF-SFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDET 246 (605)
Q Consensus 168 ~a~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 246 (605)
.+..+.+.+.+.++.+.+. .++.+|.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.+....+.
T Consensus 8 ~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~------ 81 (501)
T 4g26_A 8 PSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESS------ 81 (501)
T ss_dssp ----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSS------
T ss_pred hHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhh------
Confidence 4455667777777766554 588899999999999999999999999999999999999999988876543221
Q ss_pred CCCCcchHHHHHHHHHhcCChHHHHHHHhhCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChHHHHHHHHH
Q 007400 247 DARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCA 326 (605)
Q Consensus 247 ~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 326 (605)
+.+..++|.++|++|...|+.||..||+.+|.+
T Consensus 82 -----------------------------------------------~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~ 114 (501)
T 4g26_A 82 -----------------------------------------------PNPGLSRGFDIFKQMIVDKVVPNEATFTNGARL 114 (501)
T ss_dssp -----------------------------------------------CCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHH
T ss_pred -----------------------------------------------hcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence 234467888999999999999999999999999
Q ss_pred HhcccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCC---CCCcchHHHHHHHHHHcCCHHHH
Q 007400 327 CASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDN---KENSMLWNTMISALTQHGYDEQA 403 (605)
Q Consensus 327 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~a 403 (605)
|++.|++++|.++|++|.+.|+.|+..+|+.+|.+|++.|++++|.++|++|.. .||..+|++||.+|++.|+.++|
T Consensus 115 ~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A 194 (501)
T 4g26_A 115 AVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKV 194 (501)
T ss_dssp HHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHH
Confidence 999999999999999999999888777777777777776666666666665542 35666666666666666666666
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 007400 404 IRLFHDMVRSSVKPDKITLAVILNACTH 431 (605)
Q Consensus 404 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 431 (605)
.+++++|.+.|..|+..||+.++..|..
T Consensus 195 ~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 195 YKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp HHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred HHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 6666666666666666666666666654
No 6
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.94 E-value=4.9e-26 Score=228.13 Aligned_cols=188 Identities=15% Similarity=0.155 Sum_probs=169.5
Q ss_pred eeHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCC---------hHHHHHHHHHHHHhCCCCChh
Q 007400 151 VSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEE---------LKLTRQVHGQVLVTGFLSNVV 221 (605)
Q Consensus 151 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~---------~~~a~~~~~~~~~~~~~~~~~ 221 (605)
..++.+|.+|++.|++++|+++|++|.+.|+.||..||+++|.+|++.+. ++.|.++|++|...|+.||..
T Consensus 27 ~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ 106 (501)
T 4g26_A 27 ALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEA 106 (501)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHH
Confidence 35788899999999999999999999999999999999999999987654 688999999999999999999
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhhcCCCCcchHHHHHHHHHhcCChHHHHHHHhhCCCCChhhHHHHHHHHHhCCChHHH
Q 007400 222 ISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKA 301 (605)
Q Consensus 222 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 301 (605)
+|++||.+|++.|++++|.++|++|.. .-..||..+|+++|.+|++.|++++|
T Consensus 107 tyn~lI~~~~~~g~~~~A~~l~~~M~~---------------------------~g~~Pd~~tyn~lI~~~~~~g~~~~A 159 (501)
T 4g26_A 107 TFTNGARLAVAKDDPEMAFDMVKQMKA---------------------------FGIQPRLRSYGPALFGFCRKGDADKA 159 (501)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHH---------------------------TTCCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH---------------------------cCCCCccceehHHHHHHHHCCCHHHH
Confidence 999999999999999999977776532 22357889999999999999999999
Q ss_pred HHHHHHHHHCCCCCChHHHHHHHHHHhcccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhc
Q 007400 302 LELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKC 365 (605)
Q Consensus 302 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 365 (605)
.++|++|.+.|+.||..||+.+|.+|++.|+.++|.+++++|.+.+..|+..||+.++..|...
T Consensus 160 ~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 160 YEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999999999999999999888763
No 7
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.93 E-value=5.5e-24 Score=218.70 Aligned_cols=423 Identities=10% Similarity=-0.024 Sum_probs=297.8
Q ss_pred hHHHHHHHHHHccCChHHHHHHHhhcC--CCCceeHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHhc
Q 007400 120 FSYNNMLSGYANLGMMKHARNLFDNMA--ERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVK 197 (605)
Q Consensus 120 ~~~~~li~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 197 (605)
..+......+.+.|++++|...|+++. .|+...|..+..++.+.|++++|.+.++.+.+.+ +.+..++..+..++..
T Consensus 7 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~ 85 (514)
T 2gw1_A 7 LALKDKGNQFFRNKKYDDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANEG 85 (514)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcCccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHH
Confidence 345556666777777777777777665 3666667777777777777777777777776633 2244566667777777
Q ss_pred cCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhcCCC----CcchHHH---HHHHHHhcCChHHH
Q 007400 198 LEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDAR----DVLTWTT---MVSGYAKLGDMESA 270 (605)
Q Consensus 198 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~~~~---li~~~~~~~~~~~A 270 (605)
.|++++|...|+.+.+.+. ++......++..+........+.+.+..+... +...+.. .............+
T Consensus 86 ~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (514)
T 2gw1_A 86 LGKFADAMFDLSVLSLNGD-FNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSM 164 (514)
T ss_dssp TTCHHHHHHHHHHHHHSSS-CCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHH
T ss_pred HhhHHHHHHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHH
Confidence 7777777777777766653 23333333444433333333332222111100 0000000 00000011111111
Q ss_pred HHHHhhCCC---------C-ChhhHHHHHHHHHh---CCChHHHHHHHHHHHH-----CCCCC--------ChHHHHHHH
Q 007400 271 SKLFNEMPE---------K-NPVSWTTLIAGYTR---NGLGQKALELFTRMMI-----LRIRP--------NQHTFSSCL 324 (605)
Q Consensus 271 ~~~~~~~~~---------~-~~~~~~~l~~~~~~---~g~~~~a~~~~~~m~~-----~g~~p--------~~~~~~~ll 324 (605)
...+..... + +...+......+.. .|++++|+..|+++.+ ..-.| +..++..+.
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (514)
T 2gw1_A 165 ASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTG 244 (514)
T ss_dssp HHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHH
T ss_pred HHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHH
Confidence 122222211 1 24455555555554 8999999999999987 32122 345677788
Q ss_pred HHHhcccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCC--CCCcchHHHHHHHHHHcCCHHH
Q 007400 325 CACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDN--KENSMLWNTMISALTQHGYDEQ 402 (605)
Q Consensus 325 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~ 402 (605)
..+...|+++.|...++.+.+.... ...+..+..+|...|++++|...++.+.. +.+..++..+...+...|++++
T Consensus 245 ~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 322 (514)
T 2gw1_A 245 IFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQ 322 (514)
T ss_dssp HHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHH
Confidence 8899999999999999999987633 88889999999999999999999997543 2367789999999999999999
Q ss_pred HHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHchHhhCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhC
Q 007400 403 AIRLFHDMVRSSVKP-DKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKM 481 (605)
Q Consensus 403 a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 481 (605)
|...++++.+. .| +..++..+..++...|++++|...++++... .+.+...+..++..+.+.|++++|...++++
T Consensus 323 A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 398 (514)
T 2gw1_A 323 AGKDFDKAKEL--DPENIFPYIQLACLAYRENKFDDCETLFSEAKRK--FPEAPEVPNFFAEILTDKNDFDKALKQYDLA 398 (514)
T ss_dssp HHHHHHHHHHT--CSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHh--ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--cccCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 99999999985 44 5678999999999999999999999999833 2224678899999999999999999999876
Q ss_pred C----CCCC----HHHHHHHHHHHHh---cCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 007400 482 P----YEHD----SYLWNALHGVCRI---HGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINER 550 (605)
Q Consensus 482 ~----~~~~----~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 550 (605)
. ..++ ..++..++..+.. .|++++|...++++++..|++..++..++.+|.+.|++++|...++++.+.
T Consensus 399 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 478 (514)
T 2gw1_A 399 IELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADL 478 (514)
T ss_dssp HHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 2 1222 4488889999999 999999999999999999999999999999999999999999999998874
No 8
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.93 E-value=9.6e-24 Score=216.89 Aligned_cols=270 Identities=11% Similarity=-0.003 Sum_probs=223.9
Q ss_pred hHHHHHHHHHh---cCChHHHHHHHhhCCC----------------C-ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCC
Q 007400 253 TWTTMVSGYAK---LGDMESASKLFNEMPE----------------K-NPVSWTTLIAGYTRNGLGQKALELFTRMMILR 312 (605)
Q Consensus 253 ~~~~li~~~~~---~~~~~~A~~~~~~~~~----------------~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 312 (605)
.+......+.. .|++++|...|+++.+ + +..++..++..+...|++++|+..|+++....
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~ 267 (514)
T 2gw1_A 188 KELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELF 267 (514)
T ss_dssp HHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC
Confidence 34444444443 7778888887776544 1 34578888999999999999999999998864
Q ss_pred CCCChHHHHHHHHHHhcccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcC--CCCCcchHHHH
Q 007400 313 IRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTD--NKENSMLWNTM 390 (605)
Q Consensus 313 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l 390 (605)
|+...+..+..++...|+++.|...++.+.+.. +.+..++..+..+|...|++++|...|+... .+.+..++..+
T Consensus 268 --~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 344 (514)
T 2gw1_A 268 --PRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQL 344 (514)
T ss_dssp --CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHH
T ss_pred --ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHH
Confidence 447788889999999999999999999998876 5567889999999999999999999999754 22367789999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHchHhhCCCCC----HHHHHHHHHHH
Q 007400 391 ISALTQHGYDEQAIRLFHDMVRSSVKP-DKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPN----QEHHACLIELL 465 (605)
Q Consensus 391 ~~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~ 465 (605)
...+...|++++|...++++.+. .| +..++..+..++...|++++|...++++.....-.++ ...+..++.++
T Consensus 345 ~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~ 422 (514)
T 2gw1_A 345 ACLAYRENKFDDCETLFSEAKRK--FPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLL 422 (514)
T ss_dssp HHHTTTTTCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHH--cccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHH
Confidence 99999999999999999999984 44 5678999999999999999999999998843322232 34889999999
Q ss_pred Hh---cCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHH
Q 007400 466 AQ---AGCSDQLMNQLEKMP--YEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLL 527 (605)
Q Consensus 466 ~~---~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 527 (605)
.. .|++++|...++++. .+.+..++..++.++...|++++|...|+++++..|+++..+..+
T Consensus 423 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 489 (514)
T 2gw1_A 423 TRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAI 489 (514)
T ss_dssp HTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHHHHHHH
T ss_pred hhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccHHHHHHH
Confidence 99 999999999998862 345788899999999999999999999999999999887777655
No 9
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.92 E-value=8e-23 Score=206.19 Aligned_cols=322 Identities=9% Similarity=0.039 Sum_probs=238.4
Q ss_pred hhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhcCCCCcchHHHHHHHHHhc
Q 007400 185 EFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKL 264 (605)
Q Consensus 185 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~ 264 (605)
...+..+...+.+.|++++|..+|+.+.+..+ .+..++..+..+|...|++++|.
T Consensus 26 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~l~~~~~~~g~~~~A~------------------------ 80 (450)
T 2y4t_A 26 VEKHLELGKKLLAAGQLADALSQFHAAVDGDP-DNYIAYYRRATVFLAMGKSKAAL------------------------ 80 (450)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHH------------------------
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHCCCHHHHH------------------------
Confidence 33445555555555555555555555554422 23444555555555555555555
Q ss_pred CChHHHHHHHhhCCC---CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCh----HHHHHH------------HH
Q 007400 265 GDMESASKLFNEMPE---KNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQ----HTFSSC------------LC 325 (605)
Q Consensus 265 ~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~----~~~~~l------------l~ 325 (605)
..|+++.+ .+..++..++..|.+.|++++|+..|+++.+. .|+. ..+..+ ..
T Consensus 81 -------~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 151 (450)
T 2y4t_A 81 -------PDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKS--NPSENEEKEAQSQLIKSDEMQRLRSQAL 151 (450)
T ss_dssp -------HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -------HHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHHHHHHHHHHHHH
Confidence 44444432 24566777777777777777777777777764 3433 333333 44
Q ss_pred HHhcccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCC--CCCcchHHHHHHHHHHcCCHHHH
Q 007400 326 ACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDN--KENSMLWNTMISALTQHGYDEQA 403 (605)
Q Consensus 326 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a 403 (605)
.+...|++++|...++.+.+.. +.+..++..++.+|.+.|++++|.+.|+.+.. +.+..+|..++..|...|++++|
T Consensus 152 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 230 (450)
T 2y4t_A 152 NAFGSGDYTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELS 230 (450)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 4778899999999999988875 56778888999999999999999999987652 23678899999999999999999
Q ss_pred HHHHHHHHHCCCCCCH-HHHHHH------------HHHHhccCcHHHHHHHHHHchHhhCCCCC-----HHHHHHHHHHH
Q 007400 404 IRLFHDMVRSSVKPDK-ITLAVI------------LNACTHSGLVQEGLTYFESMTHDLGIIPN-----QEHHACLIELL 465 (605)
Q Consensus 404 ~~~~~~m~~~~~~p~~-~~~~~l------------~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~~~~l~~~~ 465 (605)
+..|+++.. ..|+. ..+..+ +.++...|++++|..+|+++.. ..|+ ...+..++.++
T Consensus 231 ~~~~~~~~~--~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~---~~p~~~~~~~~~~~~l~~~~ 305 (450)
T 2y4t_A 231 LSEVRECLK--LDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMK---TEPSIAEYTVRSKERICHCF 305 (450)
T ss_dssp HHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---HCCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH--hCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---cCCcchHHHHHHHHHHHHHH
Confidence 999999987 45654 344444 7889999999999999999983 3444 45788999999
Q ss_pred HhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHH------------H
Q 007400 466 AQAGCSDQLMNQLEKMP--YEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSI------------Y 531 (605)
Q Consensus 466 ~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~------------~ 531 (605)
.+.|++++|...++++. .+.+..+|..++.+|...|++++|...|+++++..|+++..+..++.+ |
T Consensus 306 ~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y 385 (450)
T 2y4t_A 306 SKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYY 385 (450)
T ss_dssp HTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSG
T ss_pred HHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHH
Confidence 99999999999999862 345789999999999999999999999999999999999999999844 5
Q ss_pred HhcC-----CchHHHHHHHH
Q 007400 532 SALG-----KGRLVEKVRQL 546 (605)
Q Consensus 532 ~~~g-----~~~~a~~~~~~ 546 (605)
...| +.+++.+.+++
T Consensus 386 ~~lg~~~~~~~~~~~~~y~~ 405 (450)
T 2y4t_A 386 KILGVKRNAKKQEIIKAYRK 405 (450)
T ss_dssp GGSCSSTTCCTTHHHHHHHH
T ss_pred HHhCCCccCCHHHHHHHHHH
Confidence 5555 55666777775
No 10
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.92 E-value=2.5e-22 Score=207.59 Aligned_cols=418 Identities=11% Similarity=0.047 Sum_probs=316.2
Q ss_pred chHHHHHHHHHHccCChHHHHHHHhhcCC---CCceeHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 007400 119 LFSYNNMLSGYANLGMMKHARNLFDNMAE---RDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTIC 195 (605)
Q Consensus 119 ~~~~~~li~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~ 195 (605)
...+..+...+.+.|++++|...|+++.+ .++..|..+..++.+.|++++|++.|+++.+.+ +.+..++..+..++
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~ 103 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASAN 103 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHH
Confidence 35677888888999999999999988763 467788888889999999999999999988744 23566788888888
Q ss_pred hccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhcCCC------CcchHHHHHHHHHhcCChHH
Q 007400 196 VKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDAR------DVLTWTTMVSGYAKLGDMES 269 (605)
Q Consensus 196 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------~~~~~~~li~~~~~~~~~~~ 269 (605)
...|++++|...++ .... .|+. ....+..+...+....|...++++... ........+..+....+.+.
T Consensus 104 ~~~g~~~~A~~~~~-~~~~--~~~~--~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (537)
T 3fp2_A 104 ESLGNFTDAMFDLS-VLSL--NGDF--DGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHL 178 (537)
T ss_dssp HHHTCHHHHHHHHH-HHC---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHH
T ss_pred HHcCCHHHHHHHHH-HHhc--CCCC--ChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHH
Confidence 89999999999886 3322 2221 122344555566667888888887653 22334455666667777777
Q ss_pred HHHHHhhCCCCChh---hHHHHHHHHHh--------CCChHHHHHHHHHHHHCCCCCC--------hHHHHHHHHHHhcc
Q 007400 270 ASKLFNEMPEKNPV---SWTTLIAGYTR--------NGLGQKALELFTRMMILRIRPN--------QHTFSSCLCACASI 330 (605)
Q Consensus 270 A~~~~~~~~~~~~~---~~~~l~~~~~~--------~g~~~~a~~~~~~m~~~g~~p~--------~~~~~~ll~~~~~~ 330 (605)
+...+......+.. ....+...+.. .|++++|+.+|+++.+. .|+ ..++..+...+...
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~~~~~g~~~~~~ 256 (537)
T 3fp2_A 179 EVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSA--NTVDDPLRENAALALCYTGIFHFLK 256 (537)
T ss_dssp HHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH--CCCcchhhHHHHHHHHHHHHHHHhc
Confidence 77777776654333 33333333222 25789999999998875 344 22466666778888
Q ss_pred cchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCC--CCCcchHHHHHHHHHHcCCHHHHHHHHH
Q 007400 331 VSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDN--KENSMLWNTMISALTQHGYDEQAIRLFH 408 (605)
Q Consensus 331 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 408 (605)
|+++.|...++.+.+.. |+...+..+...+...|++++|...|+.... +.+..+|..+...+...|++++|...++
T Consensus 257 ~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 334 (537)
T 3fp2_A 257 NNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQ 334 (537)
T ss_dssp TCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 99999999999999875 4478888899999999999999999987542 2367789999999999999999999999
Q ss_pred HHHHCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHchHhhCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHhCC----
Q 007400 409 DMVRSSVKP-DKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPN-QEHHACLIELLAQAGCSDQLMNQLEKMP---- 482 (605)
Q Consensus 409 ~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~---- 482 (605)
++.+. .| +...+..+..++...|++++|...++++... .|+ ...+..+...+...|++++|...++++.
T Consensus 335 ~a~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~ 409 (537)
T 3fp2_A 335 KAQSL--NPENVYPYIQLACLLYKQGKFTESEAFFNETKLK---FPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEE 409 (537)
T ss_dssp HHHHH--CTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCC
Confidence 99984 45 4678889999999999999999999999833 344 6788899999999999999999998752
Q ss_pred ----CCCCHHHHHHHHHHHHhc----------CCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHH
Q 007400 483 ----YEHDSYLWNALHGVCRIH----------GNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLIN 548 (605)
Q Consensus 483 ----~~~~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 548 (605)
.......+..++.++... |++++|...|+++++..|++..++..++.+|.+.|++++|.+.++++.
T Consensus 410 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 489 (537)
T 3fp2_A 410 VQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSA 489 (537)
T ss_dssp HCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 112233355566777777 999999999999999999999999999999999999999999999987
Q ss_pred hCC
Q 007400 549 ERQ 551 (605)
Q Consensus 549 ~~~ 551 (605)
+..
T Consensus 490 ~~~ 492 (537)
T 3fp2_A 490 ILA 492 (537)
T ss_dssp HHC
T ss_pred HhC
Confidence 753
No 11
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.91 E-value=7.3e-22 Score=204.05 Aligned_cols=432 Identities=9% Similarity=-0.018 Sum_probs=283.4
Q ss_pred hhHHHHHHHhhhcCChhHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCChhHHHHHhccCCC---CCchHHHHHHHHH
Q 007400 53 ETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPV---KNLFSYNNMLSGY 129 (605)
Q Consensus 53 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~ 129 (605)
..+..+...+.+.|++++|.+.|+.++...+..+ .++..+..+|...|++++|...++++.+ .+..++..+...+
T Consensus 26 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~--~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 103 (537)
T 3fp2_A 26 VQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEP--VFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASAN 103 (537)
T ss_dssp HHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCH--HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCc--HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHH
Confidence 4455555666666666666666666666553322 2555666666666666666666665542 2334555555555
Q ss_pred HccCChHHHHHHHhhcCCCCceeHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCChHHHHHHHH
Q 007400 130 ANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHG 209 (605)
Q Consensus 130 ~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 209 (605)
...|++++|...|+.+. .++......+..+...+....+...++.+.... |+.
T Consensus 104 ~~~g~~~~A~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~--~~~------------------------ 156 (537)
T 3fp2_A 104 ESLGNFTDAMFDLSVLS-LNGDFDGASIEPMLERNLNKQAMKVLNENLSKD--EGR------------------------ 156 (537)
T ss_dssp HHHTCHHHHHHHHHHHC------------CHHHHHHHHHHHHHHHHHCC-------------------------------
T ss_pred HHcCCHHHHHHHHHHHh-cCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhC--ccc------------------------
Confidence 55555555555554322 111112222333334444455666666654321 000
Q ss_pred HHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhcCCCCcc---hHHHHHHHHH--------hcCChHHHHHHHhhCC
Q 007400 210 QVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVL---TWTTMVSGYA--------KLGDMESASKLFNEMP 278 (605)
Q Consensus 210 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~li~~~~--------~~~~~~~A~~~~~~~~ 278 (605)
.....|+. ..+..+....+.+.+...+......+.. ....+...+. ..|++++|..+++++.
T Consensus 157 ---~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l 229 (537)
T 3fp2_A 157 ---GSQVLPSN----TSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLL 229 (537)
T ss_dssp -----CCCCCH----HHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---cccccchH----hHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 00011111 1222233334444444444333332221 1122221111 1246677777777765
Q ss_pred CC---C-------hhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhcccchHHHHHHHHHHHHcCC
Q 007400 279 EK---N-------PVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNF 348 (605)
Q Consensus 279 ~~---~-------~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 348 (605)
+. + ..++..+...+...|++++|+..|+++... .|+...+..+...+...|+++.|...+..+.+..
T Consensus 230 ~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~- 306 (537)
T 3fp2_A 230 SANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN- 306 (537)
T ss_dssp C--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-
T ss_pred HHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-
Confidence 42 2 224667778889999999999999999985 5668888889999999999999999999999876
Q ss_pred CCChhHHHHHHHHHHhcCChHHHHHHHHhcCC--CCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHH
Q 007400 349 RSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDN--KENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKP-DKITLAVI 425 (605)
Q Consensus 349 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~l 425 (605)
+.+..++..+...+...|++++|...|+.... +.+...|..+...+...|++++|...++++.+. .| +...+..+
T Consensus 307 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l 384 (537)
T 3fp2_A 307 PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLK--FPTLPEVPTFF 384 (537)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTHHHHHH
T ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHH
Confidence 56788899999999999999999999997642 236778999999999999999999999999985 45 56789999
Q ss_pred HHHHhccCcHHHHHHHHHHchHhhCCCC----CHHHHHHHHHHHHhc----------CChHHHHHHHHhCC--CCCCHHH
Q 007400 426 LNACTHSGLVQEGLTYFESMTHDLGIIP----NQEHHACLIELLAQA----------GCSDQLMNQLEKMP--YEHDSYL 489 (605)
Q Consensus 426 ~~~~~~~g~~~~a~~~~~~~~~~~~~~p----~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~--~~~~~~~ 489 (605)
..++...|++++|...|+++.....-.+ ....+..+..++.+. |++++|...++++. .+.+..+
T Consensus 385 ~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~ 464 (537)
T 3fp2_A 385 AEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQA 464 (537)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHH
Confidence 9999999999999999999874321111 223355666778888 99999999999862 3467889
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHH
Q 007400 490 WNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHG 525 (605)
Q Consensus 490 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 525 (605)
+..++.++...|++++|.+.|++++++.|.+.....
T Consensus 465 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 500 (537)
T 3fp2_A 465 KIGLAQLKLQMEKIDEAIELFEDSAILARTMDEKLQ 500 (537)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--CHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHH
Confidence 999999999999999999999999999997665544
No 12
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.91 E-value=1.7e-21 Score=196.45 Aligned_cols=363 Identities=10% Similarity=0.045 Sum_probs=223.6
Q ss_pred CceeHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHH
Q 007400 149 DVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVD 228 (605)
Q Consensus 149 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 228 (605)
+...+..+...+.+.|++++|+.+|+.+.+.. +.+..++..+..++...|++++|...++.+.+.++. +..++..+..
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~ 102 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMD-FTAARLQRGH 102 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-cHHHHHHHHH
Confidence 34556666777777777777777777776532 235666777777777777777777777777776533 5667777777
Q ss_pred HHHhcCChHHHHHHHhhcCCCCc------chHHHHHHHHHhcCChHHHHHHHhhCCCCChhhHHHHHHHHHhCCChHHHH
Q 007400 229 AYAKCGELSDARRLFDETDARDV------LTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKAL 302 (605)
Q Consensus 229 ~~~~~g~~~~a~~~~~~~~~~~~------~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 302 (605)
+|.+.|++++|...|+++...++ ..+..++..+.. ..+..+...+...|++++|+
T Consensus 103 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------------------~~~~~~a~~~~~~~~~~~A~ 163 (450)
T 2y4t_A 103 LLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEM-------------------QRLRSQALNAFGSGDYTAAI 163 (450)
T ss_dssp HHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHH-------------------HHHHHHHHHHHHcCCHHHHH
Confidence 77788888888777777665433 334433333110 01222333445555555555
Q ss_pred HHHHHHHHCCCCCChHHHHHHHHHHhcccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCC-C
Q 007400 303 ELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDN-K 381 (605)
Q Consensus 303 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~ 381 (605)
..|+++.... +.+...+..+..++...|++++|..+++.+.+.. +.+..++..++.+|...|++++|...|+.+.. .
T Consensus 164 ~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 241 (450)
T 2y4t_A 164 AFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD 241 (450)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 5555555432 2344455555555555566666666665555543 34455555666666666666666666654431 1
Q ss_pred C-CcchHHHH------------HHHHHHcCCHHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHhccCcHHHHHHHHH
Q 007400 382 E-NSMLWNTM------------ISALTQHGYDEQAIRLFHDMVRSSVKPD-----KITLAVILNACTHSGLVQEGLTYFE 443 (605)
Q Consensus 382 ~-~~~~~~~l------------~~~~~~~g~~~~a~~~~~~m~~~~~~p~-----~~~~~~l~~~~~~~g~~~~a~~~~~ 443 (605)
| +...+..+ +..+...|++++|...|+++.+ ..|+ ...+..+..++.+.|++++|...++
T Consensus 242 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~--~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 319 (450)
T 2y4t_A 242 QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMK--TEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCS 319 (450)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 1 22333333 6777788888888888888877 4454 2367777778888888888888888
Q ss_pred HchHhhCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHH------------HHhcC-----CH
Q 007400 444 SMTHDLGIIP-NQEHHACLIELLAQAGCSDQLMNQLEKM-PYEH-DSYLWNALHGV------------CRIHG-----NI 503 (605)
Q Consensus 444 ~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~------------~~~~g-----~~ 503 (605)
++.. ..| +...+..++.+|...|++++|...++++ ...| +..++..+..+ |...| +.
T Consensus 320 ~a~~---~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~ 396 (450)
T 2y4t_A 320 EVLQ---MEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKK 396 (450)
T ss_dssp HHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCT
T ss_pred HHHH---hCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCH
Confidence 8772 234 4677888888888888888888888775 2233 45566655533 22333 56
Q ss_pred HHHHHHHHH-HHhcCCCCCc----------hHHHHHHHHHhcCCchH
Q 007400 504 DMGRKVVDQ-LIDQNPQSSA----------THGLLSSIYSALGKGRL 539 (605)
Q Consensus 504 ~~A~~~~~~-~~~~~p~~~~----------~~~~l~~~~~~~g~~~~ 539 (605)
+++.+.|++ +++..|++.. .+..+..+|...|+.++
T Consensus 397 ~~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~ 443 (450)
T 2y4t_A 397 QEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEM 443 (450)
T ss_dssp THHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGG
T ss_pred HHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHH
Confidence 778888887 6777776543 33445555555555443
No 13
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.87 E-value=1.4e-19 Score=176.34 Aligned_cols=301 Identities=11% Similarity=0.010 Sum_probs=194.0
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHhhcCCC---CcchHHHHHHHHHhcCChHHHHHHHhhCCC---CChhhHHHHHHHHH
Q 007400 220 VVISSSIVDAYAKCGELSDARRLFDETDAR---DVLTWTTMVSGYAKLGDMESASKLFNEMPE---KNPVSWTTLIAGYT 293 (605)
Q Consensus 220 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~ 293 (605)
...+..+...+...|++++|...|+++... ++..+..+...+...|++++|...++++.+ .+...+..+...+.
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 82 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLL 82 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHH
Confidence 445556666666777777777666654421 333444444445555555555555544432 13344444444555
Q ss_pred hCCChHHHHHHHHHHHHCCCCC---C-hHHHHHHHHHHhcccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChH
Q 007400 294 RNGLGQKALELFTRMMILRIRP---N-QHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLN 369 (605)
Q Consensus 294 ~~g~~~~a~~~~~~m~~~g~~p---~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 369 (605)
..|++++|+..|+++.+. .| + ...+..+.... . ...+..+...+...|+++
T Consensus 83 ~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~-------~----------------~~~~~~~a~~~~~~~~~~ 137 (359)
T 3ieg_A 83 KQGKLDEAEDDFKKVLKS--NPSEQEEKEAESQLVKAD-------E----------------MQRLRSQALDAFDGADYT 137 (359)
T ss_dssp HHTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHH-------H----------------HHHHHHHHHHHHHTTCHH
T ss_pred HcCChHHHHHHHHHHHhc--CCcccChHHHHHHHHHHH-------H----------------HHHHHHHHHHHHHccCHH
Confidence 555555555555544442 22 1 11111110000 0 001122256777788888
Q ss_pred HHHHHHHhcC--CCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHch
Q 007400 370 DGRQVFDLTD--NKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKP-DKITLAVILNACTHSGLVQEGLTYFESMT 446 (605)
Q Consensus 370 ~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 446 (605)
+|.+.++.+. .+.+...+..+...+...|++++|...++++.+. .| +..++..+..++...|++++|...++++.
T Consensus 138 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 215 (359)
T 3ieg_A 138 AAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKL--KSDNTEAFYKISTLYYQLGDHELSLSEVRECL 215 (359)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 8888887654 2235667777888888888888888888888874 34 56678888888888888888888888887
Q ss_pred HhhCCCCC-HHHHH------------HHHHHHHhcCChHHHHHHHHhCC--CCCCH----HHHHHHHHHHHhcCCHHHHH
Q 007400 447 HDLGIIPN-QEHHA------------CLIELLAQAGCSDQLMNQLEKMP--YEHDS----YLWNALHGVCRIHGNIDMGR 507 (605)
Q Consensus 447 ~~~~~~p~-~~~~~------------~l~~~~~~~g~~~~A~~~~~~~~--~~~~~----~~~~~l~~~~~~~g~~~~A~ 507 (605)
.. .|+ ...+. .++..+.+.|++++|...++++. .+.+. ..+..++.++...|++++|.
T Consensus 216 ~~---~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 292 (359)
T 3ieg_A 216 KL---DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAI 292 (359)
T ss_dssp HH---CTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred hh---CccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHH
Confidence 32 333 22222 33667888999999999988762 12233 23556778889999999999
Q ss_pred HHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 007400 508 KVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINER 550 (605)
Q Consensus 508 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 550 (605)
..++++++..|+++.++..++.++...|++++|...++++.+.
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~ 335 (359)
T 3ieg_A 293 RICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEH 335 (359)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999988763
No 14
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.86 E-value=2.8e-19 Score=174.18 Aligned_cols=321 Identities=9% Similarity=0.027 Sum_probs=241.3
Q ss_pred ChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhcCC---CCcchHHHHHHH
Q 007400 184 NEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDA---RDVLTWTTMVSG 260 (605)
Q Consensus 184 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~ 260 (605)
|...+..+...+...|++++|...++.+.+..+ .+..++..+..++...|++++|...|+++.. .+...+..+...
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 80 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDP-DNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHL 80 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHH
Confidence 456778888899999999999999999999864 3678899999999999999999999998764 256788999999
Q ss_pred HHhcCChHHHHHHHhhCCCCCh------hhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhcccchH
Q 007400 261 YAKLGDMESASKLFNEMPEKNP------VSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLK 334 (605)
Q Consensus 261 ~~~~~~~~~A~~~~~~~~~~~~------~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~ 334 (605)
+...|++++|...|+++.+.++ ..+..+..... ...+..+...+...|+++
T Consensus 81 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~~~~~ 137 (359)
T 3ieg_A 81 LLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADE-----------------------MQRLRSQALDAFDGADYT 137 (359)
T ss_dssp HHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTTCHH
T ss_pred HHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHccCHH
Confidence 9999999999999999865333 23333321100 011223344555566666
Q ss_pred HHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCC--CCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 007400 335 HGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDN--KENSMLWNTMISALTQHGYDEQAIRLFHDMVR 412 (605)
Q Consensus 335 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 412 (605)
+|...++.+.+.. +.+..++..+..++...|++++|...++.... +.+..++..+...+...|++++|...+++..+
T Consensus 138 ~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~ 216 (359)
T 3ieg_A 138 AAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLK 216 (359)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 6666666666554 44556666777777777777777777775432 22566777778888888888888888888877
Q ss_pred CCCCCCH-HHHH------------HHHHHHhccCcHHHHHHHHHHchHhhCCCCC-H----HHHHHHHHHHHhcCChHHH
Q 007400 413 SSVKPDK-ITLA------------VILNACTHSGLVQEGLTYFESMTHDLGIIPN-Q----EHHACLIELLAQAGCSDQL 474 (605)
Q Consensus 413 ~~~~p~~-~~~~------------~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~----~~~~~l~~~~~~~g~~~~A 474 (605)
. .|+. ..+. .+...+...|++++|...++++... .|+ . ..+..+..++...|++++|
T Consensus 217 ~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~~~~la~~~~~~~~~~~A 291 (359)
T 3ieg_A 217 L--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT---EPSVAEYTVRSKERICHCFSKDEKPVEA 291 (359)
T ss_dssp H--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred h--CccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCCchHHHHHHHHHHHHHHHHccCHHHH
Confidence 3 4443 3322 2366688899999999999998833 333 2 3455688899999999999
Q ss_pred HHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhc
Q 007400 475 MNQLEKMP--YEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSAL 534 (605)
Q Consensus 475 ~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 534 (605)
.+.+++.. .+.+..++..++.++...|++++|...|+++++..|++...+..+..++...
T Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~ 353 (359)
T 3ieg_A 292 IRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLL 353 (359)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Confidence 99998862 3457889999999999999999999999999999999999988888887653
No 15
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.85 E-value=5.2e-18 Score=172.48 Aligned_cols=366 Identities=10% Similarity=0.001 Sum_probs=262.1
Q ss_pred CceeHHHHHHHHHh----cCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHhc----cCChHHHHHHHHHHHHhCCCCCh
Q 007400 149 DVVSWNTMIIGYAK----SGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVK----LEELKLTRQVHGQVLVTGFLSNV 220 (605)
Q Consensus 149 ~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~ 220 (605)
++..+..+...|.. .+++++|+..|++..+.| +...+..+...+.. .+++++|...|++..+.| +.
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~ 111 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LP 111 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CH
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CH
Confidence 34444444444444 455555555555555432 34445555555554 555666666665555543 33
Q ss_pred hHHHHHHHHHHh----cCChHHHHHHHhhcCCC-CcchHHHHHHHHHh----cCChHHHHHHHhhCCC-CChhhHHHHHH
Q 007400 221 VISSSIVDAYAK----CGELSDARRLFDETDAR-DVLTWTTMVSGYAK----LGDMESASKLFNEMPE-KNPVSWTTLIA 290 (605)
Q Consensus 221 ~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~-~~~~~~~li~~~~~----~~~~~~A~~~~~~~~~-~~~~~~~~l~~ 290 (605)
..+..|...|.. .+++++|...|++.... ++..+..+...|.. .++.++|...|++..+ .++.++..+..
T Consensus 112 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~ 191 (490)
T 2xm6_A 112 QAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWSCNQLGY 191 (490)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 444455555555 55666666666555433 44455555555554 5666677777766543 36677788888
Q ss_pred HHHh----CCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhc----ccchHHHHHHHHHHHHcCCCCChhHHHHHHHHH
Q 007400 291 GYTR----NGLGQKALELFTRMMILRIRPNQHTFSSCLCACAS----IVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMY 362 (605)
Q Consensus 291 ~~~~----~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 362 (605)
.|.. .+++++|+.+|++..+.| +...+..+...+.. .+++++|...++...+.+ +...+..+..+|
T Consensus 192 ~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y 265 (490)
T 2xm6_A 192 MYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYIL 265 (490)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHH
T ss_pred HHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHH
Confidence 8887 789999999999888764 45566666666664 788999999999888765 455667777778
Q ss_pred Hh----cCChHHHHHHHHhcCCCCCcchHHHHHHHHHHc-----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC
Q 007400 363 SK----CGCLNDGRQVFDLTDNKENSMLWNTMISALTQH-----GYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSG 433 (605)
Q Consensus 363 ~~----~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~-----g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g 433 (605)
.. .+++++|...|+......+...+..+...|... +++++|+.+|++..+.| +...+..+...|...|
T Consensus 266 ~~g~~~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g 342 (490)
T 2xm6_A 266 EQGLAGAKEPLKALEWYRKSAEQGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLG 342 (490)
T ss_dssp HHTTTSSCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSC
T ss_pred HCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCC
Confidence 77 889999999999877666778888888888887 89999999999999864 4567777777777656
Q ss_pred ---cHHHHHHHHHHchHhhCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCC
Q 007400 434 ---LVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQ----AGCSDQLMNQLEKMPYEHDSYLWNALHGVCRI----HGN 502 (605)
Q Consensus 434 ---~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~g~ 502 (605)
++++|..+|++.. +. .++..+..|...|.. .+++++|.+.+++.....++..+..++..|.. .++
T Consensus 343 ~~~~~~~A~~~~~~a~-~~---~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~Lg~~y~~g~g~~~d 418 (490)
T 2xm6_A 343 SEEEHKKAVEWFRKAA-AK---GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQGLSAAQVQLGEIYYYGLGVERD 418 (490)
T ss_dssp CHHHHHHHHHHHHHHH-HT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCC
T ss_pred CcccHHHHHHHHHHHH-HC---CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCCCCC
Confidence 8899999999988 32 357788889999988 89999999999987434578888899999988 899
Q ss_pred HHHHHHHHHHHHhcCC---CCCchHHHHHHHHHh
Q 007400 503 IDMGRKVVDQLIDQNP---QSSATHGLLSSIYSA 533 (605)
Q Consensus 503 ~~~A~~~~~~~~~~~p---~~~~~~~~l~~~~~~ 533 (605)
+++|...|+++.+..| +++.....++.++..
T Consensus 419 ~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~~~ 452 (490)
T 2xm6_A 419 YVQAWAWFDTASTNDMNLFGTENRNITEKKLTAK 452 (490)
T ss_dssp HHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSCHH
T ss_pred HHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcCHh
Confidence 9999999999999984 367777777776654
No 16
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.84 E-value=3.9e-16 Score=165.76 Aligned_cols=411 Identities=10% Similarity=0.108 Sum_probs=259.3
Q ss_pred HHHhcCChhHHHHHHHHHHHcCC--CCChhhHHHHHHHhhhcCChhHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCC
Q 007400 26 SLISKGQLSEAISSLDLLAQRGI--RLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGS 103 (605)
Q Consensus 26 ~~~~~g~~~~a~~~~~~~~~~g~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 103 (605)
.+...|.+.+|+++|++..-.+- .-+...-+.++.+..+. +..+..+....+-. . ...-+...+...|.
T Consensus 994 af~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~----~----d~~eIA~Iai~lgl 1064 (1630)
T 1xi4_A 994 AFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDN----Y----DAPDIANIAISNEL 1064 (1630)
T ss_pred HHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhh----c----cHHHHHHHHHhCCC
Confidence 45578999999999999984321 12345555566555554 45555555444431 1 23346677777888
Q ss_pred hhHHHHHhccCCCCCchHHHHHHHHHHccCChHHHHHHHhhcCCCCceeHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC
Q 007400 104 DVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISC 183 (605)
Q Consensus 104 ~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p 183 (605)
+++|..+|++.... ....+.++. ..+++++|.++.++.. +..+|..+..++...|++++|++.|.+. -
T Consensus 1065 yEEAf~IYkKa~~~-~~A~~VLie---~i~nldrAiE~Aervn--~p~vWsqLAKAql~~G~~kEAIdsYiKA------d 1132 (1630)
T 1xi4_A 1065 FEEAFAIFRKFDVN-TSAVQVLIE---HIGNLDRAYEFAERCN--EPAVWSQLAKAQLQKGMVKEAIDSYIKA------D 1132 (1630)
T ss_pred HHHHHHHHHHcCCH-HHHHHHHHH---HHhhHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCHHHHHHHHHhc------C
Confidence 88888888887522 122222222 6677888888887664 3566778888888888888888888653 4
Q ss_pred ChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhcCCCCcchHHHHHHHHHh
Q 007400 184 NEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAK 263 (605)
Q Consensus 184 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~ 263 (605)
|...|..++.+|.+.|++++|.+.+....+... +....+.++.+|++.+++++..... ..++...|..+...|..
T Consensus 1133 D~say~eVa~~~~~lGkyEEAIeyL~mArk~~~--e~~Idt~LafaYAKl~rleele~fI---~~~n~ad~~~iGd~le~ 1207 (1630)
T 1xi4_A 1133 DPSSYMEVVQAANTSGNWEELVKYLQMARKKAR--ESYVETELIFALAKTNRLAELEEFI---NGPNNAHIQQVGDRCYD 1207 (1630)
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcc--cccccHHHHHHHHhhcCHHHHHHHH---hCCCHHHHHHHHHHHHh
Confidence 677777788888888888888888877766552 3333334777788887777544443 33455566677777888
Q ss_pred cCChHHHHHHHhhCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhcccchHHHHHHHHHH
Q 007400 264 LGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFL 343 (605)
Q Consensus 264 ~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 343 (605)
.|++++|..+|... ..|..++..+.+.|++++|++.+++. .+..+|..+..+|...|++..|......
T Consensus 1208 eg~YeeA~~~Y~kA-----~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~~Ef~LA~~cgl~- 1275 (1630)
T 1xi4_A 1208 EKMYDAAKLLYNNV-----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH- 1275 (1630)
T ss_pred cCCHHHHHHHHHhh-----hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhhHHHHHHHHHHh-
Confidence 88888888888775 36777888888888888888888765 3456777777777777777777665442
Q ss_pred HHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCC--CCCcchHHHHHHHHHHc--CCHHHHHHHHHHHHHCCCCC--
Q 007400 344 IRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDN--KENSMLWNTMISALTQH--GYDEQAIRLFHDMVRSSVKP-- 417 (605)
Q Consensus 344 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~--g~~~~a~~~~~~m~~~~~~p-- 417 (605)
+..++..+..++..|.+.|.+++|+++++.... +.....|+-+...+++- ++..++.++|..-.. ++|
T Consensus 1276 ----Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~~rin--i~k~~ 1349 (1630)
T 1xi4_A 1276 ----IVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVN--IPKVL 1349 (1630)
T ss_pred ----hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcc--cchHh
Confidence 234455666777777777888888777765432 22344565555555553 333344444442222 222
Q ss_pred ----CHHHHHHHHHHHhccCcHHHHHHHHHHchH----------hhCCCCCHHHHHHHHHHHHhcC--------------
Q 007400 418 ----DKITLAVILNACTHSGLVQEGLTYFESMTH----------DLGIIPNQEHHACLIELLAQAG-------------- 469 (605)
Q Consensus 418 ----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----------~~~~~p~~~~~~~l~~~~~~~g-------------- 469 (605)
+...|.-++..|.+.|+++.|....-.-.. ...-..+++.|...+..|...+
T Consensus 1350 r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~kv~n~elyykai~Fyl~~~P~~lndLl~~l~~r 1429 (1630)
T 1xi4_A 1350 RAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYLEFKPLLLNDLLMVLSPR 1429 (1630)
T ss_pred HHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhcccccHHHHHHHHHHHHhhChHHHHHHHHHhhhc
Confidence 334666777777777777776632211110 0012334666666666666555
Q ss_pred -ChHHHHHHHHh
Q 007400 470 -CSDQLMNQLEK 480 (605)
Q Consensus 470 -~~~~A~~~~~~ 480 (605)
+.+++.+++.+
T Consensus 1430 lD~~R~V~l~~~ 1441 (1630)
T 1xi4_A 1430 LDHTRAVNYFSK 1441 (1630)
T ss_pred CChHHHHHHHHH
Confidence 66666666664
No 17
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.83 E-value=5.3e-16 Score=164.80 Aligned_cols=352 Identities=10% Similarity=0.075 Sum_probs=271.1
Q ss_pred CceeHHHHHHHHHhcCChHHHHHHHHHHHhCCC--CCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHH
Q 007400 149 DVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSI--SCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSI 226 (605)
Q Consensus 149 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~--~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 226 (605)
|+.--...+++|+..|.+.++++++++..-.+- .-+...-+.++.+..+. +..+..++...... .....+
T Consensus 984 ~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~-------~d~~eI 1055 (1630)
T 1xi4_A 984 DPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDN-------YDAPDI 1055 (1630)
T ss_pred CHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhh-------ccHHHH
Confidence 445556778899999999999999999884321 12234455566666665 55666666555431 123447
Q ss_pred HHHHHhcCChHHHHHHHhhcCCCCcchHHHHHHHHHhcCChHHHHHHHhhCCCCChhhHHHHHHHHHhCCChHHHHHHHH
Q 007400 227 VDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFT 306 (605)
Q Consensus 227 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 306 (605)
...+...|.+++|..+|++.. ......+.++ -..+++++|.++.+++. ++.+|..+..++.+.|++++|+..|.
T Consensus 1056 A~Iai~lglyEEAf~IYkKa~-~~~~A~~VLi---e~i~nldrAiE~Aervn--~p~vWsqLAKAql~~G~~kEAIdsYi 1129 (1630)
T 1xi4_A 1056 ANIAISNELFEEAFAIFRKFD-VNTSAVQVLI---EHIGNLDRAYEFAERCN--EPAVWSQLAKAQLQKGMVKEAIDSYI 1129 (1630)
T ss_pred HHHHHhCCCHHHHHHHHHHcC-CHHHHHHHHH---HHHhhHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 788888999999999999975 2222223332 27788999999998774 46788899999999999999999996
Q ss_pred HHHHCCCCCChHHHHHHHHHHhcccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCCCCCcch
Q 007400 307 RMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSML 386 (605)
Q Consensus 307 ~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 386 (605)
+. -|...|..++.+|.+.|++++|.+.+....+.. ++....+.++.+|.+.+++++..... ..++...
T Consensus 1130 KA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~~~n~ad 1197 (1630)
T 1xi4_A 1130 KA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----NGPNNAH 1197 (1630)
T ss_pred hc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----hCCCHHH
Confidence 63 567788889999999999999999999888765 33334446899999999988644443 3446677
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHchHhhCCCCCHHHHHHHHHHHH
Q 007400 387 WNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLA 466 (605)
Q Consensus 387 ~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~ 466 (605)
|..+...|...|++++|..+|... ..|..++.++.+.|+++.|.+.+++.. +..+|..+..++.
T Consensus 1198 ~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA~-------n~~aWkev~~acv 1261 (1630)
T 1xi4_A 1198 IQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKAN-------STRTWKEVCFACV 1261 (1630)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHhC-------CHHHHHHHHHHHh
Confidence 888999999999999999999884 378999999999999999999998774 4578888889999
Q ss_pred hcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhc--CCchHHHHHH
Q 007400 467 QAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSAL--GKGRLVEKVR 544 (605)
Q Consensus 467 ~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~--g~~~~a~~~~ 544 (605)
..|++..|........ .++..+..++..|...|.+++|+.++++++.++|.+...+..|+.+|.+. ++..++.+.|
T Consensus 1262 e~~Ef~LA~~cgl~Ii--v~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f 1339 (1630)
T 1xi4_A 1262 DGKEFRLAQMCGLHIV--VHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELF 1339 (1630)
T ss_pred hhhHHHHHHHHHHhhh--cCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 9999999998877543 56667778899999999999999999999999999999998888888874 3344444443
No 18
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.83 E-value=3.2e-19 Score=174.56 Aligned_cols=277 Identities=12% Similarity=0.009 Sum_probs=203.9
Q ss_pred cCChHHHHH-HHhhCCC--C-----ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhcccchHH
Q 007400 264 LGDMESASK-LFNEMPE--K-----NPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKH 335 (605)
Q Consensus 264 ~~~~~~A~~-~~~~~~~--~-----~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~ 335 (605)
.|++++|.. .+++... + +...+..+...+.+.|++++|+..|+++.+.. +.+...+..+..++...|++++
T Consensus 38 ~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~ 116 (368)
T 1fch_A 38 LSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELL 116 (368)
T ss_dssp --------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHH
Confidence 345555555 5554332 1 23456666777777777777777777777653 3455566667777777777777
Q ss_pred HHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCCC-C-CcchHHH---------------HHHHHHHcC
Q 007400 336 GKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNK-E-NSMLWNT---------------MISALTQHG 398 (605)
Q Consensus 336 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~-~~~~~~~---------------l~~~~~~~g 398 (605)
|...++.+.+.. +.+..++..+..+|...|++++|.+.|+.+... | +...+.. .+..+...|
T Consensus 117 A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (368)
T 1fch_A 117 AISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDS 195 (368)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcc
Confidence 777777777665 455667777777777777777777777654321 1 1222211 133334889
Q ss_pred CHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHhccCcHHHHHHHHHHchHhhCCCCC-HHHHHHHHHHHHhcCChHHH
Q 007400 399 YDEQAIRLFHDMVRSSVKPD---KITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPN-QEHHACLIELLAQAGCSDQL 474 (605)
Q Consensus 399 ~~~~a~~~~~~m~~~~~~p~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A 474 (605)
++++|...++++.+. .|+ ..++..+..++...|++++|...++++... .|+ ...+..++.++.+.|++++|
T Consensus 196 ~~~~A~~~~~~a~~~--~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---~~~~~~~~~~l~~~~~~~g~~~~A 270 (368)
T 1fch_A 196 LFLEVKELFLAAVRL--DPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV---RPNDYLLWNKLGATLANGNQSEEA 270 (368)
T ss_dssp HHHHHHHHHHHHHHH--STTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHHHHh--CcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcCCHHHHHHHHHHHHHcCCHHHH
Confidence 999999999999984 454 678999999999999999999999999832 444 78899999999999999999
Q ss_pred HHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-----------CchHHHHHHHHHhcCCchHHH
Q 007400 475 MNQLEKMP--YEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQS-----------SATHGLLSSIYSALGKGRLVE 541 (605)
Q Consensus 475 ~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~-----------~~~~~~l~~~~~~~g~~~~a~ 541 (605)
...++++. .+.+..++..++.++...|++++|...|+++++..|++ ..+|..++.+|...|++++|.
T Consensus 271 ~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 350 (368)
T 1fch_A 271 VAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYG 350 (368)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHH
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHH
Confidence 99999862 34578899999999999999999999999999998877 789999999999999999999
Q ss_pred HHHHHH
Q 007400 542 KVRQLI 547 (605)
Q Consensus 542 ~~~~~~ 547 (605)
.++++.
T Consensus 351 ~~~~~~ 356 (368)
T 1fch_A 351 AADARD 356 (368)
T ss_dssp HHHTTC
T ss_pred HhHHHH
Confidence 987643
No 19
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.83 E-value=2.1e-18 Score=165.87 Aligned_cols=253 Identities=8% Similarity=0.051 Sum_probs=175.7
Q ss_pred ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccc-chHHHHHHHHHHHHcCCCCChhHHHHHH
Q 007400 281 NPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIV-SLKHGKQVHGFLIRTNFRSNTIVMSSLI 359 (605)
Q Consensus 281 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 359 (605)
+...+..++..+...|++++|+.+++++.+.. +.+...+..+...+...| +++.|...++.+.+.. +.+...+..+.
T Consensus 55 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~ 132 (330)
T 3hym_B 55 HASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYG 132 (330)
T ss_dssp CTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHH
T ss_pred ChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHH
Confidence 33445555566666666777776666666532 334455666666666666 6677777777666654 44556667777
Q ss_pred HHHHhcCChHHHHHHHHhcCC--CCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCcHH
Q 007400 360 DMYSKCGCLNDGRQVFDLTDN--KENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKP-DKITLAVILNACTHSGLVQ 436 (605)
Q Consensus 360 ~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~ 436 (605)
.++...|++++|...|+.... +.+...+..+...+...|++++|...++++.+. .| +...+..+...+...|+++
T Consensus 133 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~ 210 (330)
T 3hym_B 133 HSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSI--APEDPFVMHEVGVVAFQNGEWK 210 (330)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcccHH
Confidence 777777777777777775442 224556666777788888888888888888774 34 4567777888888888888
Q ss_pred HHHHHHHHchHhhC-------CCCCHHHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHH
Q 007400 437 EGLTYFESMTHDLG-------IIPNQEHHACLIELLAQAGCSDQLMNQLEKMP--YEHDSYLWNALHGVCRIHGNIDMGR 507 (605)
Q Consensus 437 ~a~~~~~~~~~~~~-------~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~ 507 (605)
+|...++++..... ......++..++.+|...|++++|...+++.. .+.+..++..++.++...|++++|.
T Consensus 211 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~ 290 (330)
T 3hym_B 211 TAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAV 290 (330)
T ss_dssp HHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHH
Confidence 88888887763221 12235677888888888888888888887752 2346677888888888888888888
Q ss_pred HHHHHHHhcCCCCCchHHHHHHHHH-hcCCc
Q 007400 508 KVVDQLIDQNPQSSATHGLLSSIYS-ALGKG 537 (605)
Q Consensus 508 ~~~~~~~~~~p~~~~~~~~l~~~~~-~~g~~ 537 (605)
..++++++..|+++..+..++.++. ..|+.
T Consensus 291 ~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 291 DYFHTALGLRRDDTFSVTMLGHCIEMYIGDS 321 (330)
T ss_dssp HHHHTTTTTCSCCHHHHHHHHHHHHTTTTC-
T ss_pred HHHHHHHccCCCchHHHHHHHHHHHHHhCch
Confidence 8888888888888888888888874 44553
No 20
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.83 E-value=3.7e-17 Score=166.19 Aligned_cols=363 Identities=11% Similarity=0.015 Sum_probs=306.1
Q ss_pred HHHHHHHHHhCCCCCChhhHHHHHHHHhc----cCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHh----cCChHHHH
Q 007400 169 GLKFYKVLRRFSISCNEFSFAGILTICVK----LEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAK----CGELSDAR 240 (605)
Q Consensus 169 a~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~ 240 (605)
+.+.++...+. .+...+..+...+.. .++++.|...++...+.| +...+..|...|.. .++.++|.
T Consensus 26 ~~~~~~~~a~~---g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~ 99 (490)
T 2xm6_A 26 NLEQLKQKAES---GEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAV 99 (490)
T ss_dssp CHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHH
T ss_pred HHHHHHHHHHC---CCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHH
Confidence 34555555443 367777777777776 899999999999998875 56788889999998 89999999
Q ss_pred HHHhhcCCC-CcchHHHHHHHHHh----cCChHHHHHHHhhCCCC-ChhhHHHHHHHHHh----CCChHHHHHHHHHHHH
Q 007400 241 RLFDETDAR-DVLTWTTMVSGYAK----LGDMESASKLFNEMPEK-NPVSWTTLIAGYTR----NGLGQKALELFTRMMI 310 (605)
Q Consensus 241 ~~~~~~~~~-~~~~~~~li~~~~~----~~~~~~A~~~~~~~~~~-~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~ 310 (605)
+.|++.... ++..+..+...|.. .+++++|...|++..+. ++..+..+...|.. .+++++|+++|++..+
T Consensus 100 ~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~ 179 (490)
T 2xm6_A 100 IWYKKAALKGLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAE 179 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Confidence 999987765 67778888888888 88999999999987654 67788888888888 7899999999999998
Q ss_pred CCCCCChHHHHHHHHHHhc----ccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHh----cCChHHHHHHHHhcCCCC
Q 007400 311 LRIRPNQHTFSSCLCACAS----IVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSK----CGCLNDGRQVFDLTDNKE 382 (605)
Q Consensus 311 ~g~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~ 382 (605)
.| +...+..+...+.. .++.++|...+++..+.+ +...+..+...|.. .+++++|...|+......
T Consensus 180 ~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~ 253 (490)
T 2xm6_A 180 QG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG 253 (490)
T ss_dssp TT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT
T ss_pred CC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC
Confidence 65 56777778877776 899999999999999875 56677788888886 889999999999877666
Q ss_pred CcchHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc-----CcHHHHHHHHHHchHhhCCCC
Q 007400 383 NSMLWNTMISALTQ----HGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHS-----GLVQEGLTYFESMTHDLGIIP 453 (605)
Q Consensus 383 ~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~-----g~~~~a~~~~~~~~~~~~~~p 453 (605)
+...+..+...|.. .++.++|+.+|++..+.| +...+..+...|... +++++|..+|++.. +.+
T Consensus 254 ~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~-~~~--- 326 (490)
T 2xm6_A 254 NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSA-EQG--- 326 (490)
T ss_dssp CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHH-HTT---
T ss_pred CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHH-hcC---
Confidence 88888888888888 899999999999998764 566777788888776 89999999999998 422
Q ss_pred CHHHHHHHHHHHHhcC---ChHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCCchHHH
Q 007400 454 NQEHHACLIELLAQAG---CSDQLMNQLEKMPYEHDSYLWNALHGVCRI----HGNIDMGRKVVDQLIDQNPQSSATHGL 526 (605)
Q Consensus 454 ~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~~ 526 (605)
+...+..|...|...| ++++|.+.+++.....++..+..++..|.. .+++++|...|+++.+.. ++.++..
T Consensus 327 ~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~ 404 (490)
T 2xm6_A 327 DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--LSAAQVQ 404 (490)
T ss_dssp CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHH
T ss_pred CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHH
Confidence 4567788888888867 789999999987434688899999999998 899999999999999864 6789999
Q ss_pred HHHHHHh----cCCchHHHHHHHHHHhCCC
Q 007400 527 LSSIYSA----LGKGRLVEKVRQLINERQF 552 (605)
Q Consensus 527 l~~~~~~----~g~~~~a~~~~~~~~~~~~ 552 (605)
|+.+|.. .+++++|...|++..+.+.
T Consensus 405 Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 405 LGEIYYYGLGVERDYVQAWAWFDTASTNDM 434 (490)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHcCCCCCCCHHHHHHHHHHHHHCCC
Confidence 9999999 8999999999999988764
No 21
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.83 E-value=2.2e-18 Score=165.75 Aligned_cols=263 Identities=13% Similarity=0.017 Sum_probs=229.7
Q ss_pred CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhcccchHHHHHHHHHHHHcCCCCChhHHHHHH
Q 007400 280 KNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLI 359 (605)
Q Consensus 280 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 359 (605)
.++..+..++..+...|++++|+.+|+++.+.. +.+...+..++.++...|++++|..+++.+.+.. +.+...+..+.
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 97 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVG 97 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHH
Confidence 466678888899999999999999999998753 4455667778888899999999999999999876 56778899999
Q ss_pred HHHHhcC-ChHHHHHHHHhcCC--CCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCcH
Q 007400 360 DMYSKCG-CLNDGRQVFDLTDN--KENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKP-DKITLAVILNACTHSGLV 435 (605)
Q Consensus 360 ~~~~~~g-~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~ 435 (605)
..+...| ++++|.+.|+.... +.+...|..+...+...|++++|...++++.+. .| +...+..+...+...|++
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~ 175 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQL--MKGCHLPMLYIGLEYGLTNNS 175 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--TTTCSHHHHHHHHHHHHTTCH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--ccccHHHHHHHHHHHHHHhhH
Confidence 9999999 99999999997553 235678999999999999999999999999984 44 456788899999999999
Q ss_pred HHHHHHHHHchHhhCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHhCC-----------CCCCHHHHHHHHHHHHhcCCH
Q 007400 436 QEGLTYFESMTHDLGIIPN-QEHHACLIELLAQAGCSDQLMNQLEKMP-----------YEHDSYLWNALHGVCRIHGNI 503 (605)
Q Consensus 436 ~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----------~~~~~~~~~~l~~~~~~~g~~ 503 (605)
++|...++++. ...|+ ...+..++..+...|++++|...+++.. .+....++..++.++...|++
T Consensus 176 ~~A~~~~~~al---~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 252 (330)
T 3hym_B 176 KLAERFFSQAL---SIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKY 252 (330)
T ss_dssp HHHHHHHHHHH---TTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHH---HhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCH
Confidence 99999999998 44554 7889999999999999999999998752 134467899999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 007400 504 DMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINE 549 (605)
Q Consensus 504 ~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 549 (605)
++|...++++++..|++...+..++.++...|++++|...++++.+
T Consensus 253 ~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 298 (330)
T 3hym_B 253 AEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALG 298 (330)
T ss_dssp HHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHc
Confidence 9999999999999999999999999999999999999999997765
No 22
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.81 E-value=2.2e-16 Score=162.12 Aligned_cols=410 Identities=10% Similarity=0.048 Sum_probs=286.9
Q ss_pred CchHHHHHHHHHHccCChHHHHHHHhhcCC--C-CceeHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 007400 118 NLFSYNNMLSGYANLGMMKHARNLFDNMAE--R-DVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTI 194 (605)
Q Consensus 118 ~~~~~~~li~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~ 194 (605)
+..+|..++. +.+.|++++|..+|+++.+ | +...|..++..+.+.|++++|..+|+++.+. .|+...|...+..
T Consensus 12 ~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~--~p~~~lw~~~~~~ 88 (530)
T 2ooe_A 12 DLDAWSILIR-EAQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK--VLHIDLWKCYLSY 88 (530)
T ss_dssp CHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT--CCCHHHHHHHHHH
T ss_pred CHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCChHHHHHHHHH
Confidence 5678888888 4778999999999999875 3 4567888899999999999999999999874 4777777777653
Q ss_pred H-hccCChHHHHH----HHHHHHHh-CCCC-ChhHHHHHHHHHHh---------cCChHHHHHHHhhcCCCCcchHHHHH
Q 007400 195 C-VKLEELKLTRQ----VHGQVLVT-GFLS-NVVISSSIVDAYAK---------CGELSDARRLFDETDARDVLTWTTMV 258 (605)
Q Consensus 195 ~-~~~~~~~~a~~----~~~~~~~~-~~~~-~~~~~~~l~~~~~~---------~g~~~~a~~~~~~~~~~~~~~~~~li 258 (605)
. ...|+.+.|.+ +|+..+.. |..| +...|...+....+ .|+++.|..+|++...........+.
T Consensus 89 ~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~~ 168 (530)
T 2ooe_A 89 VRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLW 168 (530)
T ss_dssp HHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHHH
T ss_pred HHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHHH
Confidence 3 34567766655 66666654 4433 45677777776654 67788888888877652111111111
Q ss_pred HHHHhcCChHHHHHHHhhCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHH------HCC---CCCCh--------HHHH
Q 007400 259 SGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMM------ILR---IRPNQ--------HTFS 321 (605)
Q Consensus 259 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~------~~g---~~p~~--------~~~~ 321 (605)
..|.. ++... +..+...++. ...+++..|..++..+. +.. ++|+. ..|.
T Consensus 169 ~~~~~---~e~~~---------~~~~~~~~l~--~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~ 234 (530)
T 2ooe_A 169 RDYNK---YEEGI---------NIHLAKKMIE--DRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWK 234 (530)
T ss_dssp HHHHH---HHHHH---------CHHHHHHHHH--TTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHH
T ss_pred HHHHH---HHHhh---------chhHHHHHHH--HhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHH
Confidence 11111 11000 0000011110 12345666666665532 111 24432 2333
Q ss_pred HHHHHHhc----ccch----HHHHHHHHHHHHcCCCCChhHHHHHHHHHHh-------cCChH-------HHHHHHHhcC
Q 007400 322 SCLCACAS----IVSL----KHGKQVHGFLIRTNFRSNTIVMSSLIDMYSK-------CGCLN-------DGRQVFDLTD 379 (605)
Q Consensus 322 ~ll~~~~~----~~~~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~g~~~-------~A~~~~~~~~ 379 (605)
..+..... .++. ..+..+|++++... +.+..+|..++..+.+ .|+++ +|..+|+...
T Consensus 235 ~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al 313 (530)
T 2ooe_A 235 KYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAI 313 (530)
T ss_dssp HHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHH
Confidence 33322221 1232 36778888888864 6678888888888876 79987 8999999765
Q ss_pred C--CC-CcchHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHhccCcHHHHHHHHHHchHhhCCCCC
Q 007400 380 N--KE-NSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDK--ITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPN 454 (605)
Q Consensus 380 ~--~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~ 454 (605)
. .| +...|..++..+.+.|++++|..+|+++++ +.|+. ..|..++..+.+.|++++|..+|++.. ...|+
T Consensus 314 ~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al---~~~~~ 388 (530)
T 2ooe_A 314 STLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAR---EDART 388 (530)
T ss_dssp TTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--SSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---TCTTC
T ss_pred HHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhC--ccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHH---hccCC
Confidence 3 24 567899999999999999999999999999 56653 478888888889999999999999998 33443
Q ss_pred -HHHHHHHHHH-HHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc----hHHH
Q 007400 455 -QEHHACLIEL-LAQAGCSDQLMNQLEKMP--YEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSA----THGL 526 (605)
Q Consensus 455 -~~~~~~l~~~-~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~----~~~~ 526 (605)
...+...+.. +...|++++|..+|++.. .+.++..|..++..+...|+.++|+.+|+++++..|.++. .|..
T Consensus 389 ~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~ 468 (530)
T 2ooe_A 389 RHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWAR 468 (530)
T ss_dssp CTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHH
T ss_pred chHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHH
Confidence 3344333322 346899999999999762 3456889999999999999999999999999999776665 7878
Q ss_pred HHHHHHhcCCchHHHHHHHHHHhC
Q 007400 527 LSSIYSALGKGRLVEKVRQLINER 550 (605)
Q Consensus 527 l~~~~~~~g~~~~a~~~~~~~~~~ 550 (605)
++......|+.+.+..+.+++.+.
T Consensus 469 ~~~~e~~~G~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 469 FLAFESNIGDLASILKVEKRRFTA 492 (530)
T ss_dssp HHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH
Confidence 889999999999999999988764
No 23
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.80 E-value=1.2e-17 Score=159.16 Aligned_cols=371 Identities=13% Similarity=0.121 Sum_probs=133.2
Q ss_pred hcCChhHHHHHhccCCCCCchHHHHHHHHHHccCChHHHHHHHhhcCCCCceeHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 007400 100 KCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRF 179 (605)
Q Consensus 100 ~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 179 (605)
+.|+.++|.+.++++..| .+|..++.++.+.|++++|++.|.+. +|..+|..++.++...|++++|+.+++..++.
T Consensus 15 ~~~~ld~A~~fae~~~~~--~vWs~La~A~l~~g~~~eAIdsfika--~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~ 90 (449)
T 1b89_A 15 HIGNLDRAYEFAERCNEP--AVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKK 90 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCCCh--HHHHHHHHHHHHcCCHHHHHHHHHcC--CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 345555555555555333 25555555555555555555555432 34445555555555556666666655544442
Q ss_pred CCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhcCCCCcchHHHHHH
Q 007400 180 SISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVS 259 (605)
Q Consensus 180 ~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~ 259 (605)
.+++.+.+.++.+|.+.|++.++.++++ .|+..+|+.+...|...|.+++|...|..+ ..|..++.
T Consensus 91 --~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a-----~n~~~LA~ 156 (449)
T 1b89_A 91 --ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRLAS 156 (449)
T ss_dssp --------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT-----TCHHHHHH
T ss_pred --CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----hhHHHHHH
Confidence 2344555555556666666655555543 244455666666666666666666666555 35566666
Q ss_pred HHHhcCChHHHHHHHhhCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhcccchHHHHHH
Q 007400 260 GYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQV 339 (605)
Q Consensus 260 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~ 339 (605)
++.+.|++++|.+.+.++ .++.+|..++.+|...|+++.|...... +..+..-...++..|.+.|.+++|..+
T Consensus 157 ~L~~Lg~yq~AVea~~KA--~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-----L~~~ad~l~~lv~~Yek~G~~eEai~l 229 (449)
T 1b89_A 157 TLVHLGEYQAAVDGARKA--NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITM 229 (449)
T ss_dssp HHHTTTCHHHHHHHHHHH--TCHHHHHHHHHHHHHTTCHHHHHHTTTT-----TTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHc--CCchhHHHHHHHHHHcCcHHHHHHHHHH-----HHhCHhhHHHHHHHHHHCCCHHHHHHH
Confidence 666666666666666655 2555666666666666666666433332 112222233455556666666666666
Q ss_pred HHHHHHcCCCCChhHHHHHHHHHHh--cCChHHHHHHHHhcCC-C------CCcchHHHHHHHHHHcCCHHHHHHHHHHH
Q 007400 340 HGFLIRTNFRSNTIVMSSLIDMYSK--CGCLNDGRQVFDLTDN-K------ENSMLWNTMISALTQHGYDEQAIRLFHDM 410 (605)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~l~~~~~~--~g~~~~A~~~~~~~~~-~------~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 410 (605)
++...... +-...+|+-|.-+|++ .++..+.++.|..-.. + .+...|..+.-.|...++++.|... |
T Consensus 230 Le~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~t---m 305 (449)
T 1b89_A 230 LEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT---M 305 (449)
T ss_dssp HHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHH---H
T ss_pred HHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHH---H
Confidence 66655444 4444555555555544 2344445555543221 1 1566788888888888888888763 3
Q ss_pred HHCC-CCCCHHHHHHHHHHHhccCcHHHHHHHHHHchHhhCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhCC-------
Q 007400 411 VRSS-VKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMP------- 482 (605)
Q Consensus 411 ~~~~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~------- 482 (605)
.++. ..-+...|.-++.--....-+-+|..++-. ..| ...+.|+.++...=+..++..++++..
T Consensus 306 ~~h~~~a~~~~~f~~~~~kv~n~elyYkai~fyl~------~~p--~~l~~ll~~l~~~ld~~r~v~~~~~~~~l~l~~~ 377 (449)
T 1b89_A 306 MNHPTDAWKEGQFKDIITKVANVELYYRAIQFYLE------FKP--LLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKP 377 (449)
T ss_dssp HHSTTTTCCHHHHHHHHHHCSSTHHHHHHHHHHHH------HCG--GGHHHHHHHHGGGCCHHHHHHHHHHTTCTTTTHH
T ss_pred HhCChhhhhhHHHHHHHhchhHHHHHHHHHHHHHh------cCH--HHHHHHHHHHHhccCcHHHHHHHHHcCCcHHHHH
Confidence 4421 111233333333322222222333333321 122 234445555555555555555555542
Q ss_pred ------CCCCHHHHHHHHHHHHhcCCHHHHH
Q 007400 483 ------YEHDSYLWNALHGVCRIHGNIDMGR 507 (605)
Q Consensus 483 ------~~~~~~~~~~l~~~~~~~g~~~~A~ 507 (605)
...+..+-.++-..|....|++.-+
T Consensus 378 yl~~v~~~n~~~vnealn~l~ieeed~~~lr 408 (449)
T 1b89_A 378 YLRSVQNHNNKSVNESLNNLFITEEDYQALR 408 (449)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhhhhHHHHH
Confidence 2334444445555566666655443
No 24
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.80 E-value=1.9e-18 Score=168.77 Aligned_cols=259 Identities=10% Similarity=-0.027 Sum_probs=201.0
Q ss_pred ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhcccchHHHHHHHHHHHHcCCCCChhHHHHHHH
Q 007400 281 NPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLID 360 (605)
Q Consensus 281 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 360 (605)
+...+..++..+.+.|++++|+..|+++.+.. +.+..++..+..++...|++++|...++++.+.. +.+..++..+..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 34457777777788888888888888877653 4456677777777888888888888888877765 455677778888
Q ss_pred HHHhcCChHHHHHHHHhcCCC-C-----------CcchHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC---CHHHHHHH
Q 007400 361 MYSKCGCLNDGRQVFDLTDNK-E-----------NSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKP---DKITLAVI 425 (605)
Q Consensus 361 ~~~~~g~~~~A~~~~~~~~~~-~-----------~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p---~~~~~~~l 425 (605)
+|...|++++|...|+.+... | ....+..+...+...|++++|...++++.+. .| +..++..+
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~l 219 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQ--NGDMIDPDLQTGL 219 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHH--SCSSCCHHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHh--CcCccCHHHHHHH
Confidence 888888888888888765421 1 1223445578889999999999999999985 44 47789999
Q ss_pred HHHHhccCcHHHHHHHHHHchHhhCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCC
Q 007400 426 LNACTHSGLVQEGLTYFESMTHDLGIIP-NQEHHACLIELLAQAGCSDQLMNQLEKMP--YEHDSYLWNALHGVCRIHGN 502 (605)
Q Consensus 426 ~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~ 502 (605)
...+...|++++|...++++... .| +..++..++.+|.+.|++++|...++++. .+.+..++..++.+|...|+
T Consensus 220 ~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~ 296 (365)
T 4eqf_A 220 GVLFHLSGEFNRAIDAFNAALTV---RPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGA 296 (365)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCC
Confidence 99999999999999999999832 44 47899999999999999999999998862 34568899999999999999
Q ss_pred HHHHHHHHHHHHhcCCC------------CCchHHHHHHHHHhcCCchHHHHHHHH
Q 007400 503 IDMGRKVVDQLIDQNPQ------------SSATHGLLSSIYSALGKGRLVEKVRQL 546 (605)
Q Consensus 503 ~~~A~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~a~~~~~~ 546 (605)
+++|...|++++++.|+ +...|..++.++...|+.+.+..+.+.
T Consensus 297 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 297 YREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp CHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 99999999999999776 367899999999999999999887764
No 25
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.78 E-value=1.3e-16 Score=149.27 Aligned_cols=268 Identities=10% Similarity=-0.018 Sum_probs=200.7
Q ss_pred HhcCChHHHHHHHhhCCCCCh----hhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhcccchHHHH
Q 007400 262 AKLGDMESASKLFNEMPEKNP----VSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGK 337 (605)
Q Consensus 262 ~~~~~~~~A~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~ 337 (605)
...|++..|+..++.....++ .....+..+|...|+++.|+..++. .-+|+..++..+...+...++.+.|.
T Consensus 10 ~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~~~A~ 85 (291)
T 3mkr_A 10 FYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRRDAIV 85 (291)
T ss_dssp HHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTHHHHH
T ss_pred HHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcHHHHH
Confidence 345666666666666554322 2334566777888888887776644 13556667777777777888888888
Q ss_pred HHHHHHHHcCC-CCChhHHHHHHHHHHhcCChHHHHHHHHhcCCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC
Q 007400 338 QVHGFLIRTNF-RSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVK 416 (605)
Q Consensus 338 ~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 416 (605)
+.++.+...+. +.+...+..+..++...|++++|++.++. +.+...+..++..+.+.|++++|.+.++++.+. .
T Consensus 86 ~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~---~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~ 160 (291)
T 3mkr_A 86 AELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ---GDSLECMAMTVQILLKLDRLDLARKELKKMQDQ--D 160 (291)
T ss_dssp HHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT---CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--C
T ss_pred HHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC---CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--C
Confidence 88888777654 34556677778899999999999999998 447788999999999999999999999999984 5
Q ss_pred CCHHHH---HHHHHHHhccCcHHHHHHHHHHchHhhCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHH
Q 007400 417 PDKITL---AVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMP--YEHDSYLWN 491 (605)
Q Consensus 417 p~~~~~---~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~ 491 (605)
|+.... ..++..+...|++++|..+|+++... .+.+...++.++.++.+.|++++|...+++.. .+.++.++.
T Consensus 161 p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~ 238 (291)
T 3mkr_A 161 EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK--CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLI 238 (291)
T ss_dssp TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 665322 22334455669999999999999843 34568889999999999999999999999862 345788899
Q ss_pred HHHHHHHhcCCHHH-HHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHH
Q 007400 492 ALHGVCRIHGNIDM-GRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVR 544 (605)
Q Consensus 492 ~l~~~~~~~g~~~~-A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~ 544 (605)
.++..+...|+.++ +.++++++++..|+++.+. +...+.+.++++..-|
T Consensus 239 ~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~----d~~~~~~~fd~~~~~~ 288 (291)
T 3mkr_A 239 NLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIK----EYRAKENDFDRLVLQY 288 (291)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHH----HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHH----HHHHHHHHHHHHHHHc
Confidence 99999999998875 6789999999999877644 3555566666665544
No 26
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.78 E-value=5.8e-17 Score=164.32 Aligned_cols=385 Identities=10% Similarity=0.004 Sum_probs=197.4
Q ss_pred ceeHHHHHHHHHhcCChHHHHHHHHHHHhC-----C--CCC-ChhhHHHHHHHHhccCChHHHHHHHHHHHHhCC-----
Q 007400 150 VVSWNTMIIGYAKSGAVEEGLKFYKVLRRF-----S--ISC-NEFSFAGILTICVKLEELKLTRQVHGQVLVTGF----- 216 (605)
Q Consensus 150 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-----~--~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~----- 216 (605)
...||.|...+...|++++|++.|++..+. + ..| ...+|..+..+|...|++++|...++++.+...
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~ 130 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSP 130 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccc
Confidence 456788888888888888888888876541 1 112 334677777777777777777777777655311
Q ss_pred -C-CChhHHHHHHHHHHhc--CChHHHHHHHhhcCCC---CcchHHHHHHH---HHhcCChHHHHHHHhhCCC---CChh
Q 007400 217 -L-SNVVISSSIVDAYAKC--GELSDARRLFDETDAR---DVLTWTTMVSG---YAKLGDMESASKLFNEMPE---KNPV 283 (605)
Q Consensus 217 -~-~~~~~~~~l~~~~~~~--g~~~~a~~~~~~~~~~---~~~~~~~li~~---~~~~~~~~~A~~~~~~~~~---~~~~ 283 (605)
. ....++..+..++.+. +++++|...|++.... ++..+..+... +...++.++|++.+++..+ .+..
T Consensus 131 ~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~ 210 (472)
T 4g1t_A 131 YRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQY 210 (472)
T ss_dssp SCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHH
T ss_pred cchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchH
Confidence 1 1233444444444443 3466666666654421 22333333222 2233444444444443321 2333
Q ss_pred hHHHHHHHHHh----CCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhcccchHHHHHHHHHHHHcCCCCChhHHHHHH
Q 007400 284 SWTTLIAGYTR----NGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLI 359 (605)
Q Consensus 284 ~~~~l~~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 359 (605)
++..+...+.. .|++++|.+.+++..... +.+...+..+...+...|+++.|...+.++.+.. +.+..++..+.
T Consensus 211 ~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg 288 (472)
T 4g1t_A 211 LKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLHCQIG 288 (472)
T ss_dssp HHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHHHHHH
Confidence 33333333322 234445555555544432 2333444444555555555555555555555443 23333444444
Q ss_pred HHHHhcCChHHHHHHHHhcCCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCcHHHH
Q 007400 360 DMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKP-DKITLAVILNACTHSGLVQEG 438 (605)
Q Consensus 360 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~a 438 (605)
.+|...+....+. .. ..........+..+.|...+++..+. .| +..++..+...+...|++++|
T Consensus 289 ~~y~~~~~~~~~~------~~-------~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~lg~~~~~~~~~~~A 353 (472)
T 4g1t_A 289 CCYRAKVFQVMNL------RE-------NGMYGKRKLLELIGHAVAHLKKADEA--NDNLFRVCSILASLHALADQYEEA 353 (472)
T ss_dssp HHHHHHHHHHHHC-------------------CHHHHHHHHHHHHHHHHHHHHH--CTTTCCCHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHhhhH------HH-------HHHHHHHHHHhhHHHHHHHHHHHhhc--CCchhhhhhhHHHHHHHhccHHHH
Confidence 3332211100000 00 00000011123456788888888773 44 345778888889999999999
Q ss_pred HHHHHHchHhhCCCCCH--HHHHHHHHH-HHhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007400 439 LTYFESMTHDLGIIPNQ--EHHACLIEL-LAQAGCSDQLMNQLEKM-PYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLI 514 (605)
Q Consensus 439 ~~~~~~~~~~~~~~p~~--~~~~~l~~~-~~~~g~~~~A~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 514 (605)
...|+++. +....|.. ..+..+... +...|++++|+..+++. ...|+...+. +....+..++++.+
T Consensus 354 ~~~~~kaL-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~---------~~~~~l~~~~~~~l 423 (472)
T 4g1t_A 354 EYYFQKEF-SKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKE---------KMKDKLQKIAKMRL 423 (472)
T ss_dssp HHHHHHHH-HSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHH---------HHHHHHHHHHHHHH
T ss_pred HHHHHHHH-hcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHH---------HHHHHHHHHHHHHH
Confidence 99999887 32222221 123333332 35678899999988875 3445433322 22345667788889
Q ss_pred hcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCCCcCCCceeEE
Q 007400 515 DQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWI 561 (605)
Q Consensus 515 ~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~s~~ 561 (605)
+.+|+++.++..+|.+|...|++++|++.|++..+.+.......+|+
T Consensus 424 ~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~ 470 (472)
T 4g1t_A 424 SKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWN 470 (472)
T ss_dssp HHCC-CTTHHHHHHHHHHHHHHCC-----------------------
T ss_pred HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcC
Confidence 99999999999999999999999999999999988776555555553
No 27
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.78 E-value=1.7e-17 Score=158.17 Aligned_cols=287 Identities=13% Similarity=0.128 Sum_probs=96.8
Q ss_pred HccCChHHHHHHHhhcCCCCceeHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCChHHHHHHHH
Q 007400 130 ANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHG 209 (605)
Q Consensus 130 ~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 209 (605)
.+.|++++|.+.++++..| .+|+.|+.++.+.|++++|++.|.+. +|..+|..++.++...|++++|..+++
T Consensus 14 ~~~~~ld~A~~fae~~~~~--~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~yl~ 85 (449)
T 1b89_A 14 EHIGNLDRAYEFAERCNEP--AVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQ 85 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHccCHHHHHHHHHhCCCh--HHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 3567899999999999665 48999999999999999999999753 678899999999999999999999888
Q ss_pred HHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhcCCCCcchHHHHHHHHHhcCChHHHHHHHhhCCCCChhhHHHHH
Q 007400 210 QVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLI 289 (605)
Q Consensus 210 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~ 289 (605)
...+. .++..+.+.|+.+|.+.|+++++.++++. ++..+|..++..|...|.+++|...|..+ ..|..++
T Consensus 86 ~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a-----~n~~~LA 155 (449)
T 1b89_A 86 MARKK--ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRLA 155 (449)
T ss_dssp -------------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT-----TCHHHHH
T ss_pred HHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----hhHHHHH
Confidence 77764 34567788899999999999988877753 45557777777777777777777777766 3566777
Q ss_pred HHHHhCCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhcccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChH
Q 007400 290 AGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLN 369 (605)
Q Consensus 290 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 369 (605)
.++.+.|++++|.+.++++ .+..+|..++.+|...|+++.|..
T Consensus 156 ~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~------------------------------- 198 (449)
T 1b89_A 156 STLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQM------------------------------- 198 (449)
T ss_dssp HHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHH-------------------------------
T ss_pred HHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHH-------------------------------
Confidence 7777777777777777665 245566666666666666666633
Q ss_pred HHHHHHHhcCCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc--cCcHHHHHHHHHHchH
Q 007400 370 DGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTH--SGLVQEGLTYFESMTH 447 (605)
Q Consensus 370 ~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~--~g~~~~a~~~~~~~~~ 447 (605)
....+.. ++.-...++..|.+.|++++|..+++..+... +-....|+.+..+|++ .++..+.++.|. +
T Consensus 199 ----~~l~L~~--~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~---~ 268 (449)
T 1b89_A 199 ----CGLHIVV--HADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFW---S 268 (449)
T ss_dssp ----TTTTTTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHS---T
T ss_pred ----HHHHHHh--CHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHH---H
Confidence 2222221 11112235555566666666666666555422 1122344444444433 233333333332 1
Q ss_pred hhCCCC------CHHHHHHHHHHHHhcCChHHHHHHHHhC
Q 007400 448 DLGIIP------NQEHHACLIELLAQAGCSDQLMNQLEKM 481 (605)
Q Consensus 448 ~~~~~p------~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 481 (605)
+.+++| +...|..++-.|...++++.|...+-+-
T Consensus 269 ~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm~~h 308 (449)
T 1b89_A 269 RVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNH 308 (449)
T ss_dssp TSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHhC
Confidence 223333 2456667777777777777776655443
No 28
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.77 E-value=1.6e-17 Score=159.51 Aligned_cols=259 Identities=9% Similarity=-0.061 Sum_probs=196.3
Q ss_pred hhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhcccchHHHHHHHHHHHHcCCCCChhHHHHHHHHH
Q 007400 283 VSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMY 362 (605)
Q Consensus 283 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 362 (605)
..+..+...+...|++++|+.+|+++.+.. +.+...+..+..++...|++++|...++.+.+.. +.+..++..+...|
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 99 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSH 99 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHH
Confidence 345556666677777777777777766542 3355566666666777777777777777776654 44566667777777
Q ss_pred HhcCChHHHHHHHHhcCCC-C-CcchHHHH--------------HH-HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 007400 363 SKCGCLNDGRQVFDLTDNK-E-NSMLWNTM--------------IS-ALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVI 425 (605)
Q Consensus 363 ~~~g~~~~A~~~~~~~~~~-~-~~~~~~~l--------------~~-~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l 425 (605)
...|++++|.+.++.+... | +...+..+ .. .+...|++++|...++++.+.. +.+..++..+
T Consensus 100 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 178 (327)
T 3cv0_A 100 TNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHASL 178 (327)
T ss_dssp HHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHH
Confidence 7777777777777654321 1 22233222 22 3677889999999999999853 2367789999
Q ss_pred HHHHhccCcHHHHHHHHHHchHhhCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCC
Q 007400 426 LNACTHSGLVQEGLTYFESMTHDLGIIP-NQEHHACLIELLAQAGCSDQLMNQLEKMP--YEHDSYLWNALHGVCRIHGN 502 (605)
Q Consensus 426 ~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~ 502 (605)
...+...|++++|...++++... .| +...+..++..+...|++++|...++++. .+.+..++..++.++...|+
T Consensus 179 a~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~ 255 (327)
T 3cv0_A 179 GVLYNLSNNYDSAAANLRRAVEL---RPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQ 255 (327)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhccHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcc
Confidence 99999999999999999999832 34 47789999999999999999999998862 34568889999999999999
Q ss_pred HHHHHHHHHHHHhcCCC------------CCchHHHHHHHHHhcCCchHHHHHHHHH
Q 007400 503 IDMGRKVVDQLIDQNPQ------------SSATHGLLSSIYSALGKGRLVEKVRQLI 547 (605)
Q Consensus 503 ~~~A~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 547 (605)
+++|...++++++..|+ +...+..++.++...|++++|..++++.
T Consensus 256 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 256 YDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp HHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 99999999999999998 6889999999999999999999998754
No 29
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.77 E-value=1.2e-15 Score=156.71 Aligned_cols=418 Identities=9% Similarity=0.042 Sum_probs=289.0
Q ss_pred HHHHHHhCCCCCchhhHHHHHHHHHhcCChhHHHHHhccCCC--C-CchHHHHHHHHHHccCChHHHHHHHhhcCC--CC
Q 007400 75 HLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPV--K-NLFSYNNMLSGYANLGMMKHARNLFDNMAE--RD 149 (605)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~A~~~~~~~~~--~~ 149 (605)
++..++..+. ....+..++. +.+.|++++|..+|+++.+ | +...|..++..+.+.|++++|..+|++... |+
T Consensus 2 le~al~~~P~--~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~ 78 (530)
T 2ooe_A 2 AEKKLEENPY--DLDAWSILIR-EAQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLH 78 (530)
T ss_dssp HHHHHHHCTT--CHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCC
T ss_pred hhhHhhhCCC--CHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Confidence 4455555533 3337888887 4789999999999999875 3 456899999999999999999999999875 66
Q ss_pred ceeHHHHHHHH-HhcCChHHHHH----HHHHHHh-CCCCC-ChhhHHHHHHHHhc---------cCChHHHHHHHHHHHH
Q 007400 150 VVSWNTMIIGY-AKSGAVEEGLK----FYKVLRR-FSISC-NEFSFAGILTICVK---------LEELKLTRQVHGQVLV 213 (605)
Q Consensus 150 ~~~~~~li~~~-~~~~~~~~a~~----~~~~m~~-~~~~p-~~~~~~~ll~~~~~---------~~~~~~a~~~~~~~~~ 213 (605)
...|...+... ...|+.+.|.+ +|+.... .|..| +...|...+....+ .|+++.|..+|+..++
T Consensus 79 ~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~ 158 (530)
T 2ooe_A 79 IDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCV 158 (530)
T ss_dssp HHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHh
Confidence 66676666533 35688877765 7776654 35554 45567777776544 6889999999999987
Q ss_pred hCCCCChhHHHHHHHHHHhcCChHHHHHHHhhcCCCCcchHHHHHHHHHhcCChHHHHHHHhh----------CC---CC
Q 007400 214 TGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNE----------MP---EK 280 (605)
Q Consensus 214 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~----------~~---~~ 280 (605)
.........|..........|. ..+..++.+ +.++++.|..++.. .. .|
T Consensus 159 ~P~~~~~~~~~~~~~~e~~~~~-~~~~~~l~~-----------------~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p 220 (530)
T 2ooe_A 159 NPMINIEQLWRDYNKYEEGINI-HLAKKMIED-----------------RSRDYMNARRVAKEYETVMKGLDRNAPSVPP 220 (530)
T ss_dssp SCCTTHHHHHHHHHHHHHHHCH-HHHHHHHHT-----------------THHHHHHHHHHHHHHHHHHHHCCSSSCCCCC
T ss_pred chhhhHHHHHHHHHHHHHhhch-hHHHHHHHH-----------------hhHHHHHHHHHHHHHHHHHHHhccccccCCC
Confidence 3111112334333222111111 111111111 12233334333322 11 11
Q ss_pred C--------hhhHHHHHHHHHhC----CCh----HHHHHHHHHHHHCCCCCChHHHHHHHHHHhc-------ccchH---
Q 007400 281 N--------PVSWTTLIAGYTRN----GLG----QKALELFTRMMILRIRPNQHTFSSCLCACAS-------IVSLK--- 334 (605)
Q Consensus 281 ~--------~~~~~~l~~~~~~~----g~~----~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~-------~~~~~--- 334 (605)
+ ...|...+...... ++. ..|..+|++.... .+.+...|......+.. .|+++
T Consensus 221 ~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~-~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~ 299 (530)
T 2ooe_A 221 QNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLV-LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAK 299 (530)
T ss_dssp C--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHH
T ss_pred CCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhchhhhhccchhhhh
Confidence 1 23555555433332 232 4778889888874 24456677777766664 68877
Q ss_pred ----HHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCC-CCC-c-chHHHHHHHHHHcCCHHHHHHHH
Q 007400 335 ----HGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDN-KEN-S-MLWNTMISALTQHGYDEQAIRLF 407 (605)
Q Consensus 335 ----~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~-~-~~~~~l~~~~~~~g~~~~a~~~~ 407 (605)
.|..++++.++.-.+.+...+..++..+.+.|++++|..+|+.+.. .|+ . ..|..++..+.+.|+.++|..+|
T Consensus 300 ~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~ 379 (530)
T 2ooe_A 300 LFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIF 379 (530)
T ss_dssp HHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHH
Confidence 8999999998733356788899999999999999999999997653 333 2 47888898899999999999999
Q ss_pred HHHHHCCCCCC-HHHHHHHHHH-HhccCcHHHHHHHHHHchHhhCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHhCC--
Q 007400 408 HDMVRSSVKPD-KITLAVILNA-CTHSGLVQEGLTYFESMTHDLGIIP-NQEHHACLIELLAQAGCSDQLMNQLEKMP-- 482 (605)
Q Consensus 408 ~~m~~~~~~p~-~~~~~~l~~~-~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-- 482 (605)
++..+. .|+ ...+...+.. +...|++++|..+|++..+. .| +...+..++..+.+.|+.++|..+|++..
T Consensus 380 ~~Al~~--~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~---~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~ 454 (530)
T 2ooe_A 380 KKARED--ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK---YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTS 454 (530)
T ss_dssp HHHHTC--TTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHH---HTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHS
T ss_pred HHHHhc--cCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHH---CCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhc
Confidence 999984 343 3344333322 33589999999999999844 34 47889999999999999999999999862
Q ss_pred --CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 007400 483 --YEH--DSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQ 519 (605)
Q Consensus 483 --~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 519 (605)
..| ....|...+......|+.+.+..+++++.+..|+
T Consensus 455 ~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p~ 495 (530)
T 2ooe_A 455 GSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFRE 495 (530)
T ss_dssp CCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCch
Confidence 122 2458888888889999999999999999999884
No 30
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.76 E-value=3.6e-17 Score=159.90 Aligned_cols=275 Identities=11% Similarity=0.023 Sum_probs=204.2
Q ss_pred ChHHHHHHHhhCCCCChhhHHHHHHHHHhCCChHHHHH-HHHHHHHCCC-CC--ChHHHHHHHHHHhcccchHHHHHHHH
Q 007400 266 DMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALE-LFTRMMILRI-RP--NQHTFSSCLCACASIVSLKHGKQVHG 341 (605)
Q Consensus 266 ~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~-~~~~m~~~g~-~p--~~~~~~~ll~~~~~~~~~~~a~~~~~ 341 (605)
.++.+...|+.+...+.. ++...|++++|+. .|++...... .| +...+..+...+...|++++|...++
T Consensus 16 ~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~ 88 (368)
T 1fch_A 16 FWDKLQAELEEMAKRDAE-------AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFE 88 (368)
T ss_dssp -------------------------------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHcCCch-------hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 344444555555443322 3345588999998 8886654321 11 34567788899999999999999999
Q ss_pred HHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcC--CCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH
Q 007400 342 FLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTD--NKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDK 419 (605)
Q Consensus 342 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~ 419 (605)
.+.+.. +.+..++..+..+|...|++++|...|+... .+.+..++..++..+...|++++|...++++... .|+.
T Consensus 89 ~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~ 165 (368)
T 1fch_A 89 AAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRY--TPAY 165 (368)
T ss_dssp HHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--STTT
T ss_pred HHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCc
Confidence 999876 6678889999999999999999999999754 2337788999999999999999999999999984 4443
Q ss_pred H-HHHH---------------HHHHHhccCcHHHHHHHHHHchHhhCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhCC-
Q 007400 420 I-TLAV---------------ILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMP- 482 (605)
Q Consensus 420 ~-~~~~---------------l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~- 482 (605)
. .+.. .+..+...|++++|...++++.......++..++..++.+|.+.|++++|...++++.
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 245 (368)
T 1fch_A 166 AHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALS 245 (368)
T ss_dssp GGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2 2211 1333348899999999999998432222247899999999999999999999998862
Q ss_pred -CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 007400 483 -YEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINER 550 (605)
Q Consensus 483 -~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 550 (605)
.+.+..++..++..+...|++++|+..|+++++..|++..++..++.+|.+.|++++|...++++.+.
T Consensus 246 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 314 (368)
T 1fch_A 246 VRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNM 314 (368)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred hCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 34568899999999999999999999999999999999999999999999999999999999998764
No 31
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.76 E-value=9.7e-17 Score=150.17 Aligned_cols=248 Identities=10% Similarity=0.029 Sum_probs=202.6
Q ss_pred HHHHHhCCChHHHHHHHHHHHHCCCCCCh--HHHHHHHHHHhcccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcC
Q 007400 289 IAGYTRNGLGQKALELFTRMMILRIRPNQ--HTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCG 366 (605)
Q Consensus 289 ~~~~~~~g~~~~a~~~~~~m~~~g~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 366 (605)
+......|++..|+..++.... ..|+. .....+.+++...|+++.|...++. .-+|+..++..+...+...|
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~--~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~ 79 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKP--SSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHS 79 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCC--CSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCST
T ss_pred HHHHHHHHHHHHHHHHHHhccc--CCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCC
Confidence 4456778999999999987654 34443 3556678899999999999976644 23567788889999999999
Q ss_pred ChHHHHHHHHhcC-C--CC-CcchHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHH
Q 007400 367 CLNDGRQVFDLTD-N--KE-NSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYF 442 (605)
Q Consensus 367 ~~~~A~~~~~~~~-~--~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 442 (605)
+.++|++.++.+. . .| +...+..+...+...|++++|++.+++ +.+...+..++..+.+.|++++|...+
T Consensus 80 ~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l 153 (291)
T 3mkr_A 80 RRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKEL 153 (291)
T ss_dssp THHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 9999999999853 2 23 556677788899999999999999987 356779999999999999999999999
Q ss_pred HHchHhhCCCCCHH---HHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 007400 443 ESMTHDLGIIPNQE---HHACLIELLAQAGCSDQLMNQLEKMP--YEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQN 517 (605)
Q Consensus 443 ~~~~~~~~~~p~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 517 (605)
+++... .|+.. ....++..+...|++++|..+|+++. .+.++..++.++.++...|++++|+..++++++.+
T Consensus 154 ~~~~~~---~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~ 230 (291)
T 3mkr_A 154 KKMQDQ---DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD 230 (291)
T ss_dssp HHHHHH---CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHhh---CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 999833 45532 11233344555699999999999872 45788999999999999999999999999999999
Q ss_pred CCCCchHHHHHHHHHhcCCchH-HHHHHHHHHhCC
Q 007400 518 PQSSATHGLLSSIYSALGKGRL-VEKVRQLINERQ 551 (605)
Q Consensus 518 p~~~~~~~~l~~~~~~~g~~~~-a~~~~~~~~~~~ 551 (605)
|+++.++..++.++...|++++ +.++++++.+..
T Consensus 231 p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~ 265 (291)
T 3mkr_A 231 SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAH 265 (291)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999986 578888887643
No 32
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.76 E-value=7.8e-17 Score=157.34 Aligned_cols=233 Identities=10% Similarity=-0.009 Sum_probs=196.4
Q ss_pred ChHHHHHHHHHHhcccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCC--CCCcchHHHHHHH
Q 007400 316 NQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDN--KENSMLWNTMISA 393 (605)
Q Consensus 316 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~ 393 (605)
+...+..+...+...|++++|..+++.+.+.. +.+..++..+..+|...|++++|+..|+.... +.+..+|..++..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 142 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVS 142 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 44558888899999999999999999999886 66788999999999999999999999997652 3367889999999
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHH-----------HHHHHHHHHhccCcHHHHHHHHHHchHhhCCCCCHHHHHHHH
Q 007400 394 LTQHGYDEQAIRLFHDMVRSSVKPDKI-----------TLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLI 462 (605)
Q Consensus 394 ~~~~g~~~~a~~~~~~m~~~~~~p~~~-----------~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~ 462 (605)
|...|++++|+..++++.+ ..|+.. .+..+..++...|++++|..+++++.......++..++..++
T Consensus 143 ~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 220 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIK--QNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLG 220 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHH--HCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHH
T ss_pred HHccccHHHHHHHHHHHHH--hCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHH
Confidence 9999999999999999998 345432 233457889999999999999999994422222588999999
Q ss_pred HHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHH
Q 007400 463 ELLAQAGCSDQLMNQLEKMP--YEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLV 540 (605)
Q Consensus 463 ~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 540 (605)
..|.+.|++++|.+.++++. .+.+..+|..++.++...|++++|+..|+++++..|+++.++..++.+|...|++++|
T Consensus 221 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A 300 (365)
T 4eqf_A 221 VLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREA 300 (365)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHH
Confidence 99999999999999999862 3467889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCC
Q 007400 541 EKVRQLINERQ 551 (605)
Q Consensus 541 ~~~~~~~~~~~ 551 (605)
...++++.+..
T Consensus 301 ~~~~~~al~~~ 311 (365)
T 4eqf_A 301 VSNFLTALSLQ 311 (365)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhC
Confidence 99999987643
No 33
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.74 E-value=8.6e-16 Score=155.65 Aligned_cols=381 Identities=12% Similarity=0.021 Sum_probs=237.1
Q ss_pred CchHHHHHHHHHHccCChHHHHHHHhhcCC------------CCceeHHHHHHHHHhcCChHHHHHHHHHHHhC-----C
Q 007400 118 NLFSYNNMLSGYANLGMMKHARNLFDNMAE------------RDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRF-----S 180 (605)
Q Consensus 118 ~~~~~~~li~~~~~~~~~~~A~~~~~~~~~------------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-----~ 180 (605)
....||.+...+...|++++|++.|++..+ ....+|+.+..+|...|++++|...+++..+. +
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 356799999999999999999999987531 23468999999999999999999999987641 1
Q ss_pred -CCC-ChhhHHHHHHHHh--ccCChHHHHHHHHHHHHhCCCCChhHHHHHHHH---HHhcCChHHHHHHHhhcCC---CC
Q 007400 181 -ISC-NEFSFAGILTICV--KLEELKLTRQVHGQVLVTGFLSNVVISSSIVDA---YAKCGELSDARRLFDETDA---RD 250 (605)
Q Consensus 181 -~~p-~~~~~~~ll~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~g~~~~a~~~~~~~~~---~~ 250 (605)
..+ ...++.....++. ..+++++|...|++.++..+. +...+..+..+ +...++.++|.+.+++... .+
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~-~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~ 208 (472)
T 4g1t_A 130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPK-NPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDN 208 (472)
T ss_dssp SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSC
T ss_pred ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcc
Confidence 111 2345655554544 346799999999999988643 45555555554 4456778888888877653 24
Q ss_pred cchHHHHHHHHHh----cCChHHHHHHHhhCCC---CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChHHHHHH
Q 007400 251 VLTWTTMVSGYAK----LGDMESASKLFNEMPE---KNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSC 323 (605)
Q Consensus 251 ~~~~~~li~~~~~----~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l 323 (605)
...+..+...+.. .+++++|.+.+++... .+..++..+...|...|++++|+..+++..+.. +-+..++..+
T Consensus 209 ~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l 287 (472)
T 4g1t_A 209 QYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLHCQI 287 (472)
T ss_dssp HHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHHHHH
Confidence 5556655555444 4678899999987653 467789999999999999999999999998752 3344455555
Q ss_pred HHHHhcccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcC--CCCCcchHHHHHHHHHHcCCHH
Q 007400 324 LCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTD--NKENSMLWNTMISALTQHGYDE 401 (605)
Q Consensus 324 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~ 401 (605)
..++...+.... ... . ..........+.++.|...|+... .+.+..++..+...+...|+++
T Consensus 288 g~~y~~~~~~~~---------~~~-~------~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~ 351 (472)
T 4g1t_A 288 GCCYRAKVFQVM---------NLR-E------NGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYE 351 (472)
T ss_dssp HHHHHHHHHHHH---------HC-------------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHhh---------hHH-H------HHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHH
Confidence 554432211110 000 0 001111112233567777776543 2336778999999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHH--HHHHHHH-HHhccCcHHHHHHHHHHchHhhCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 007400 402 QAIRLFHDMVRSSVKPDKI--TLAVILN-ACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQL 478 (605)
Q Consensus 402 ~a~~~~~~m~~~~~~p~~~--~~~~l~~-~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 478 (605)
+|+..|++.++....|... .+..+.. .....|++++|+..|++.. .+.|+........ ..+..++
T Consensus 352 ~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal---~i~~~~~~~~~~~---------~~l~~~~ 419 (472)
T 4g1t_A 352 EAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGV---KINQKSREKEKMK---------DKLQKIA 419 (472)
T ss_dssp HHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHH---HSCCCCHHHHHHH---------HHHHHHH
T ss_pred HHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH---hcCcccHHHHHHH---------HHHHHHH
Confidence 9999999999854333221 2333332 3457899999999999988 4566643322222 2233333
Q ss_pred HhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHH
Q 007400 479 EKM--PYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLS 528 (605)
Q Consensus 479 ~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 528 (605)
++. ..+.++.+|..++.++...|++++|++.|+++++..|.++.+...+|
T Consensus 420 ~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~G 471 (472)
T 4g1t_A 420 KMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWNG 471 (472)
T ss_dssp HHHHHHCC-CTTHHHHHHHHHHHHHHCC------------------------
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcCC
Confidence 332 12456789999999999999999999999999999888887766554
No 34
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.70 E-value=4.3e-16 Score=139.29 Aligned_cols=194 Identities=14% Similarity=0.102 Sum_probs=155.4
Q ss_pred CCChhHHHHHHHHHHhcCChHHHHHHHHhcCC--CCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHH
Q 007400 349 RSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDN--KENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPD-KITLAVI 425 (605)
Q Consensus 349 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~l 425 (605)
+++...+..+...+.+.|++++|...|+.... +.+...+..+...+.+.|++++|+..+++.++ +.|+ ...+..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVA--RTPRYLGGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCcHHHHHHH
Confidence 45667778888888889999999998886542 23677888899999999999999999999998 4564 5688888
Q ss_pred HHHHhcc-----------CcHHHHHHHHHHchHhhCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHhCC-CCCCHHHHHH
Q 007400 426 LNACTHS-----------GLVQEGLTYFESMTHDLGIIPN-QEHHACLIELLAQAGCSDQLMNQLEKMP-YEHDSYLWNA 492 (605)
Q Consensus 426 ~~~~~~~-----------g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~ 492 (605)
..++... |++++|+..++++. ...|+ ...+..+..+|...|++++|+..+++.. ...++..+..
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al---~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 156 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAE---RVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSA 156 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHH---HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHH---HhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHH
Confidence 9999999 99999999999998 34565 7788999999999999999999998862 1178889999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHH
Q 007400 493 LHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLI 547 (605)
Q Consensus 493 l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 547 (605)
++.++...|++++|+..|+++++..|+++..+..++.++...|++++|+..+++.
T Consensus 157 la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 157 LAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC--------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999865
No 35
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.70 E-value=3.3e-16 Score=150.25 Aligned_cols=231 Identities=10% Similarity=0.055 Sum_probs=135.1
Q ss_pred ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhcccchHHHHHHHHHHHHcCCCCChhHHHHH--
Q 007400 281 NPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSL-- 358 (605)
Q Consensus 281 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-- 358 (605)
+...+..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|...++.+.+.. +.+...+..+
T Consensus 54 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~ 131 (327)
T 3cv0_A 54 REEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEHNANAALASLRAWLLSQ-PQYEQLGSVNLQ 131 (327)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-TTTTTC------
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHhH
Confidence 33444445555555555555555555554431 2234444445555555555555555555555433 1122222222
Q ss_pred ------------HH-HHHhcCChHHHHHHHHhcCC--CCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHH
Q 007400 359 ------------ID-MYSKCGCLNDGRQVFDLTDN--KENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKP-DKITL 422 (605)
Q Consensus 359 ------------~~-~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~ 422 (605)
.. .+...|++++|...++.+.. +.+...+..+...+...|++++|...++++.+. .| +..++
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~ 209 (327)
T 3cv0_A 132 ADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVEL--RPDDAQLW 209 (327)
T ss_dssp --------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCcHHHH
Confidence 22 25556666666666665431 224566667777777777777777777777763 33 45567
Q ss_pred HHHHHHHhccCcHHHHHHHHHHchHhhCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-------------CH
Q 007400 423 AVILNACTHSGLVQEGLTYFESMTHDLGIIP-NQEHHACLIELLAQAGCSDQLMNQLEKMP-YEH-------------DS 487 (605)
Q Consensus 423 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-------------~~ 487 (605)
..+..++...|++++|...++++... .| +...+..++.+|.+.|++++|.+.++++. ..| +.
T Consensus 210 ~~l~~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 286 (327)
T 3cv0_A 210 NKLGATLANGNRPQEALDAYNRALDI---NPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATR 286 (327)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCH
Confidence 77777777777777777777777622 33 35667777777777777777777776641 112 35
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 007400 488 YLWNALHGVCRIHGNIDMGRKVVDQLIDQNP 518 (605)
Q Consensus 488 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 518 (605)
.+|..++.++...|++++|..+++++++..|
T Consensus 287 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~ 317 (327)
T 3cv0_A 287 SMWDFFRMLLNVMNRPDLVELTYAQNVEPFA 317 (327)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHTTCCSHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhcc
Confidence 6777778888888888888888777666533
No 36
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.69 E-value=1.9e-15 Score=139.37 Aligned_cols=224 Identities=8% Similarity=-0.027 Sum_probs=164.0
Q ss_pred hhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhcccchHHHHHHHHHHHHcCCCCChhHHHHHHHHH
Q 007400 283 VSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMY 362 (605)
Q Consensus 283 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 362 (605)
..|..+...+...|++++|+..|+++.+.. .+...+..+..++...|++++|...+..+.+.....
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~------------ 71 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREM------------ 71 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT------------
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCccc------------
Confidence 345556666666666666666666665544 445555555555555555555555555544321000
Q ss_pred HhcCChHHHHHHHHhcCCCCC----cchHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHH
Q 007400 363 SKCGCLNDGRQVFDLTDNKEN----SMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEG 438 (605)
Q Consensus 363 ~~~g~~~~A~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a 438 (605)
.++ ..+|..+...+...|++++|...++++.+ +.|+. ..+...|++++|
T Consensus 72 ------------------~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~--~~~~~-------~~~~~~~~~~~a 124 (258)
T 3uq3_A 72 ------------------RADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLT--EHRTA-------DILTKLRNAEKE 124 (258)
T ss_dssp ------------------TCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCCCH-------HHHHHHHHHHHH
T ss_pred ------------------ccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHh--cCchh-------HHHHHHhHHHHH
Confidence 001 45677777888888888888888888887 45553 345556788889
Q ss_pred HHHHHHchHhhCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 007400 439 LTYFESMTHDLGIIPN-QEHHACLIELLAQAGCSDQLMNQLEKMP--YEHDSYLWNALHGVCRIHGNIDMGRKVVDQLID 515 (605)
Q Consensus 439 ~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 515 (605)
...++++. ...|+ ...+..++..+...|++++|...+++.. .+.+..++..++.++...|++++|...++++++
T Consensus 125 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 201 (258)
T 3uq3_A 125 LKKAEAEA---YVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIE 201 (258)
T ss_dssp HHHHHHHH---HCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHH---HcCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 88888887 34454 6678888888999999999999988762 345688889999999999999999999999999
Q ss_pred cCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 007400 516 QNPQSSATHGLLSSIYSALGKGRLVEKVRQLINER 550 (605)
Q Consensus 516 ~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 550 (605)
..|+++..+..++.++...|++++|...++++.+.
T Consensus 202 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 236 (258)
T 3uq3_A 202 KDPNFVRAYIRKATAQIAVKEYASALETLDAARTK 236 (258)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999988764
No 37
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.66 E-value=3e-15 Score=138.07 Aligned_cols=234 Identities=10% Similarity=0.013 Sum_probs=172.4
Q ss_pred chHHHHHHHHHhcCChHHHHHHHhhCCC--CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCC--CCCC----hHHHHHH
Q 007400 252 LTWTTMVSGYAKLGDMESASKLFNEMPE--KNPVSWTTLIAGYTRNGLGQKALELFTRMMILR--IRPN----QHTFSSC 323 (605)
Q Consensus 252 ~~~~~li~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g--~~p~----~~~~~~l 323 (605)
..+..+...+...|++++|...|++..+ .+...|..+...+...|++++|+..+++..+.. ..++ ..++..+
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l 85 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELHKDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARI 85 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhhccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHH
Confidence 4677888999999999999999987643 677889999999999999999999999987632 1112 3455555
Q ss_pred HHHHhcccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCCCCCcchHHHHHHHHHHcCCHHHH
Q 007400 324 LCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQA 403 (605)
Q Consensus 324 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 403 (605)
...+...|++++|...++.+.+.. | + ...+...|++++|
T Consensus 86 ~~~~~~~~~~~~A~~~~~~a~~~~--~--------------------------------~-------~~~~~~~~~~~~a 124 (258)
T 3uq3_A 86 GNAYHKLGDLKKTIEYYQKSLTEH--R--------------------------------T-------ADILTKLRNAEKE 124 (258)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC--C--------------------------------C-------HHHHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHhcC--c--------------------------------h-------hHHHHHHhHHHHH
Confidence 666666666666666666655532 1 1 1235555677777
Q ss_pred HHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHchHhhCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhCC
Q 007400 404 IRLFHDMVRSSVKPD-KITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMP 482 (605)
Q Consensus 404 ~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 482 (605)
...++++.. ..|+ ...+..+...+...|++++|...++++... .+.+..++..++.+|.+.|++++|...+++..
T Consensus 125 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al 200 (258)
T 3uq3_A 125 LKKAEAEAY--VNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAI 200 (258)
T ss_dssp HHHHHHHHH--CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHH--cCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 777777777 3443 457777777788888888888888887732 12236777788888888888888888887752
Q ss_pred --CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC------CCCCchHHHHHHH
Q 007400 483 --YEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQN------PQSSATHGLLSSI 530 (605)
Q Consensus 483 --~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------p~~~~~~~~l~~~ 530 (605)
.+.+..+|..++.++...|++++|...++++++.. |++...+..+..+
T Consensus 201 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~~~ 256 (258)
T 3uq3_A 201 EKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKA 256 (258)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHT
T ss_pred HhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhhcCCCchHHHHHHHHHh
Confidence 34567888889999999999999999999999987 8776666665543
No 38
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.65 E-value=1.4e-14 Score=144.68 Aligned_cols=344 Identities=11% Similarity=0.041 Sum_probs=141.5
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCh---HHHHHHHHHHHHhCCCCChhHHHHHHHHHHh
Q 007400 156 MIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEEL---KLTRQVHGQVLVTGFLSNVVISSSIVDAYAK 232 (605)
Q Consensus 156 li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 232 (605)
+...+.+.|++++|.++|++..+.| +...+..+...+...|+. ++|...|+...+. +...+..|..++..
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~ 81 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAA 81 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC--------------------------------CHHHHHHHHHT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHh
Confidence 4455566677777777777666544 233334444444445555 6666666665533 33344444443434
Q ss_pred cC-----ChHHHHHHHhhcCCC-CcchHHHHHHHHHhcCChHHH---HHHHhhCCC-CChhhHHHHHHHHHhCCChHHHH
Q 007400 233 CG-----ELSDARRLFDETDAR-DVLTWTTMVSGYAKLGDMESA---SKLFNEMPE-KNPVSWTTLIAGYTRNGLGQKAL 302 (605)
Q Consensus 233 ~g-----~~~~a~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~A---~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~ 302 (605)
.| +.++|...|++...+ ++..+..+...|...+..+++ .+.+..... .++..+..+...|...+.++++.
T Consensus 82 ~~~~~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~Lg~~y~~~~~~~~~~ 161 (452)
T 3e4b_A 82 KPGATEAEHHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAGLAQVLLYRTQGTYDQHL 161 (452)
T ss_dssp C--CCHHHHHHHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCTTHHHHHHHHHHHHTCGGGGH
T ss_pred CCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcccCH
Confidence 33 455566555554433 334444444444443332222 122211111 13334444444444444333332
Q ss_pred HHHHHHHHCCCCCChHHHHHHHHHHhccc---chHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcC
Q 007400 303 ELFTRMMILRIRPNQHTFSSCLCACASIV---SLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTD 379 (605)
Q Consensus 303 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 379 (605)
.....+.+.-...+...+..+...+...| +.++|...|+...+.| +++...+
T Consensus 162 ~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~------------------------ 216 (452)
T 3e4b_A 162 DDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRV------------------------ 216 (452)
T ss_dssp HHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHH------------------------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHH------------------------
Confidence 22222111101111113333444444444 4444444444444444 2222222
Q ss_pred CCCCcchHHHHHHHHHHc----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-H--hccCcHHHHHHHHHHchHhhCCC
Q 007400 380 NKENSMLWNTMISALTQH----GYDEQAIRLFHDMVRSSVKPDKITLAVILNA-C--THSGLVQEGLTYFESMTHDLGII 452 (605)
Q Consensus 380 ~~~~~~~~~~l~~~~~~~----g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~-~--~~~g~~~~a~~~~~~~~~~~~~~ 452 (605)
..+...|... +++++|+.+|++.. .| +...+..+... + ...+++++|..+|++.. +.|
T Consensus 217 --------~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa-~~g-- 281 (452)
T 3e4b_A 217 --------DSVARVLGDATLGTPDEKTAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGR-AAD-- 281 (452)
T ss_dssp --------HHHHHHHTCGGGSSCCHHHHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHH-HTT--
T ss_pred --------HHHHHHHhCCCCCCCCHHHHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-HCC--
Confidence 3344333322 45555555555544 11 23333333333 2 23455555555555554 222
Q ss_pred CCHHHHHHHHHHHHhcC-----ChHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCCch
Q 007400 453 PNQEHHACLIELLAQAG-----CSDQLMNQLEKMPYEHDSYLWNALHGVCRI----HGNIDMGRKVVDQLIDQNPQSSAT 523 (605)
Q Consensus 453 p~~~~~~~l~~~~~~~g-----~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~ 523 (605)
+...+..|...|. .| ++++|...|++.. +.++..+..++..|.. ..++++|...|+++.+. .++..
T Consensus 282 -~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~A 356 (452)
T 3e4b_A 282 -QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARN--GQNSA 356 (452)
T ss_dssp -CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTT--TCTTH
T ss_pred -CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhh--ChHHH
Confidence 3444444454444 33 5555555555555 4455555555544443 22555555555555442 24445
Q ss_pred HHHHHHHHHh----cCCchHHHHHHHHHHhCC
Q 007400 524 HGLLSSIYSA----LGKGRLVEKVRQLINERQ 551 (605)
Q Consensus 524 ~~~l~~~~~~----~g~~~~a~~~~~~~~~~~ 551 (605)
...|+.+|.. ..+..+|...++...+.|
T Consensus 357 ~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g 388 (452)
T 3e4b_A 357 DFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQD 388 (452)
T ss_dssp HHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCC
Confidence 5555555553 235555555555555544
No 39
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.65 E-value=5.8e-15 Score=137.62 Aligned_cols=242 Identities=11% Similarity=-0.029 Sum_probs=184.9
Q ss_pred hCCChHHHHHHHHHHHHCCCC---CChHHHHHHHHHHhcccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHH
Q 007400 294 RNGLGQKALELFTRMMILRIR---PNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLND 370 (605)
Q Consensus 294 ~~g~~~~a~~~~~~m~~~g~~---p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 370 (605)
..|++++|+..|+++.+.... .+..++..+...+...|++++|...++++.+.. +.+..++..+..+|...|++++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHH
Confidence 457788888888888875321 134567777788888888888888888888775 5567788888888999999999
Q ss_pred HHHHHHhcCC--CCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHchHh
Q 007400 371 GRQVFDLTDN--KENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHD 448 (605)
Q Consensus 371 A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 448 (605)
|...|+.... +.+..++..+...+...|++++|...++++.+ ..|+.......+..+...|++++|...+++....
T Consensus 96 A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 173 (275)
T 1xnf_A 96 AYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQ--DDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK 173 (275)
T ss_dssp HHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 9998887552 23677889999999999999999999999998 4666655555555667779999999999888733
Q ss_pred hCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc
Q 007400 449 LGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMP-YEH-----DSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSA 522 (605)
Q Consensus 449 ~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 522 (605)
.+++...+ .++..+...++.++|.+.+++.. ..| +..++..++..+...|++++|...|+++++..|++..
T Consensus 174 --~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 250 (275)
T 1xnf_A 174 --SDKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFV 250 (275)
T ss_dssp --SCCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCH
T ss_pred --CCcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHH
Confidence 22333333 46777888888899999998763 222 1577888999999999999999999999999997654
Q ss_pred hHHHHHHHHHhcCCchHHHHHH
Q 007400 523 THGLLSSIYSALGKGRLVEKVR 544 (605)
Q Consensus 523 ~~~~l~~~~~~~g~~~~a~~~~ 544 (605)
. .+.++...|++++|++.+
T Consensus 251 ~---~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 251 E---HRYALLELSLLGQDQDDL 269 (275)
T ss_dssp H---HHHHHHHHHHHHHC----
T ss_pred H---HHHHHHHHHHHHhhHHHH
Confidence 4 467888889999988876
No 40
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.65 E-value=5.7e-15 Score=147.58 Aligned_cols=371 Identities=9% Similarity=0.013 Sum_probs=224.8
Q ss_pred HHHHHHHccCChHHHHHHHhhcCC-CCceeHHHHHHHHHhcCCh---HHHHHHHHHHHhCCCCCChhhHHHHHHHHhccC
Q 007400 124 NMLSGYANLGMMKHARNLFDNMAE-RDVVSWNTMIIGYAKSGAV---EEGLKFYKVLRRFSISCNEFSFAGILTICVKLE 199 (605)
Q Consensus 124 ~li~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~~~~---~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~ 199 (605)
.+...+.+.|++++|.++|++..+ .+...+..|...|...|++ ++|.++|++..+. ++..+..+...+...+
T Consensus 8 ~la~~~~~~g~~~~A~~~~~~aa~~g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~~~ 83 (452)
T 3e4b_A 8 RLANEALKRGDTVTAQQNYQQLAELGYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAAKP 83 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTCCTGGGTCC--------------------------------CHHHHHHHHHTC-
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHhCC
Confidence 356777889999999999998764 4566777777888888888 8999999998863 5566666766454444
Q ss_pred -----ChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHH---HHHHHhhcCC-CCcchHHHHHHHHHhcCC----
Q 007400 200 -----ELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSD---ARRLFDETDA-RDVLTWTTMVSGYAKLGD---- 266 (605)
Q Consensus 200 -----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~---a~~~~~~~~~-~~~~~~~~li~~~~~~~~---- 266 (605)
++++|...|+...+.|.. ..+..|...|...+..+. +.+.+..... .++..+..+...|...+.
T Consensus 84 ~~~~~~~~~A~~~~~~Aa~~g~~---~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~Lg~~y~~~~~~~~~ 160 (452)
T 3e4b_A 84 GATEAEHHEAESLLKKAFANGEG---NTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAGLAQVLLYRTQGTYDQH 160 (452)
T ss_dssp -CCHHHHHHHHHHHHHHHHTTCS---SCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCTTHHHHHHHHHHHHTCGGGG
T ss_pred CCCCcCHHHHHHHHHHHHHCCCH---HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcccC
Confidence 788999999999987743 366778888887765444 3444444332 367788888888888884
Q ss_pred hHHHHHHHhhCCCCChhhHHHHHHHHHhCC---ChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhcc----cchHHHHHH
Q 007400 267 MESASKLFNEMPEKNPVSWTTLIAGYTRNG---LGQKALELFTRMMILRIRPNQHTFSSCLCACASI----VSLKHGKQV 339 (605)
Q Consensus 267 ~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~----~~~~~a~~~ 339 (605)
.+.+..+++.....++..+..+...|...| +.++|+.+|++..+.| .++...+..+...|... +++++|...
T Consensus 161 ~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~ 239 (452)
T 3e4b_A 161 LDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKTAQAL 239 (452)
T ss_dssp HHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHHHHH
Confidence 555666677777777789999999999999 9999999999999987 45555545566666544 566666666
Q ss_pred HHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCCCCCcchHHHHHHH-H--HHcCCHHHHHHHHHHHHHCCCC
Q 007400 340 HGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISA-L--TQHGYDEQAIRLFHDMVRSSVK 416 (605)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~-~--~~~g~~~~a~~~~~~m~~~~~~ 416 (605)
|+... .| ++..+..+... + ...+++++|+.+|++..+.|
T Consensus 240 ~~~aa-~g-----------------------------------~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g-- 281 (452)
T 3e4b_A 240 LEKIA-PG-----------------------------------YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD-- 281 (452)
T ss_dssp HHHHG-GG-----------------------------------STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT--
T ss_pred HHHHc-CC-----------------------------------CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC--
Confidence 66655 22 33344444443 2 23566666666666666654
Q ss_pred CCHHHHHHHHHHHhccC-----cHHHHHHHHHHchHhhCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHhCCCCCCH
Q 007400 417 PDKITLAVILNACTHSG-----LVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQ----AGCSDQLMNQLEKMPYEHDS 487 (605)
Q Consensus 417 p~~~~~~~l~~~~~~~g-----~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~ 487 (605)
+...+..+...|. .| ++++|..+|++.. .-++.....|...|.. ..++++|..+|++.....+.
T Consensus 282 -~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-----~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~ 354 (452)
T 3e4b_A 282 -QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-----GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQN 354 (452)
T ss_dssp -CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-----TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTCT
T ss_pred -CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-----CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhChH
Confidence 4455555555554 33 6677777776554 2235556666666655 23677777777765333445
Q ss_pred HHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHh--cCCchHHHHHHHHHHh
Q 007400 488 YLWNALHGVCRI----HGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSA--LGKGRLVEKVRQLINE 549 (605)
Q Consensus 488 ~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~--~g~~~~a~~~~~~~~~ 549 (605)
.....|+..|.. ..+.++|...|+++.+..+ +.....+..+... .++..+|....++..+
T Consensus 355 ~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~--~~a~~~l~~l~~~~~~~~~~~a~~~~~~~~~ 420 (452)
T 3e4b_A 355 SADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDT--PEANDLATQLEAPLTPAQRAEGQRLVQQELA 420 (452)
T ss_dssp THHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCC--HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCC--HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 555566666653 3578888888888877653 2333334443322 2345566666665543
No 41
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.64 E-value=9.2e-15 Score=136.06 Aligned_cols=245 Identities=9% Similarity=-0.019 Sum_probs=145.3
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhcccchHHHHHHHHHHHHcCCCCC--hhHHHHHHHHH
Q 007400 285 WTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSN--TIVMSSLIDMY 362 (605)
Q Consensus 285 ~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~ 362 (605)
+......+...|++++|+..|+++.+.. +.+...+..+..++...|++++|...++.+.+....++ ...+..+...|
T Consensus 6 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~ 84 (272)
T 3u4t_A 6 EFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKIL 84 (272)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHH
Confidence 3444555566666666666666665532 22233555555566666666666666666655221111 12255666666
Q ss_pred HhcCChHHHHHHHHhcCC--CCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCcHHHHH
Q 007400 363 SKCGCLNDGRQVFDLTDN--KENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKP-DKITLAVILNACTHSGLVQEGL 439 (605)
Q Consensus 363 ~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~ 439 (605)
...|++++|...|+.... +.+..+|..+...+...|++++|+..+++.++. .| +...+..+...+...+++++|.
T Consensus 85 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~ 162 (272)
T 3u4t_A 85 MKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP--TTTDPKVFYELGQAYYYNKEYVKAD 162 (272)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS--SCCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc--CCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666665431 224456666666777777777777777666663 34 3445555552333334777777
Q ss_pred HHHHHchHhhCCCCC-HHHHHHHHHHHHhcCC---hHHHHHHHHhCC----CCCC------HHHHHHHHHHHHhcCCHHH
Q 007400 440 TYFESMTHDLGIIPN-QEHHACLIELLAQAGC---SDQLMNQLEKMP----YEHD------SYLWNALHGVCRIHGNIDM 505 (605)
Q Consensus 440 ~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~---~~~A~~~~~~~~----~~~~------~~~~~~l~~~~~~~g~~~~ 505 (605)
..|+++.+ ..|+ ...+..+..++...|+ +++|...+++.. ..|+ ..+|..++..|...|++++
T Consensus 163 ~~~~~a~~---~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 239 (272)
T 3u4t_A 163 SSFVKVLE---LKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVK 239 (272)
T ss_dssp HHHHHHHH---HSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHH---hCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHH
Confidence 77777662 2333 5566666666666666 555555555431 1122 2467778888999999999
Q ss_pred HHHHHHHHHhcCCCCCchHHHHHHHHHhcC
Q 007400 506 GRKVVDQLIDQNPQSSATHGLLSSIYSALG 535 (605)
Q Consensus 506 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 535 (605)
|...|+++++.+|+++.++..+..+....+
T Consensus 240 A~~~~~~al~~~p~~~~a~~~l~~~~~~~~ 269 (272)
T 3u4t_A 240 ADAAWKNILALDPTNKKAIDGLKMKLEHHH 269 (272)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHC-------
T ss_pred HHHHHHHHHhcCccHHHHHHHhhhhhcccc
Confidence 999999999999999888888877765544
No 42
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.63 E-value=2.1e-16 Score=162.74 Aligned_cols=126 Identities=11% Similarity=0.139 Sum_probs=113.1
Q ss_pred hHHHHHHHHHHccCChHHHHHHHhhcC-------CCCceeHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHH
Q 007400 120 FSYNNMLSGYANLGMMKHARNLFDNMA-------ERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGIL 192 (605)
Q Consensus 120 ~~~~~li~~~~~~~~~~~A~~~~~~~~-------~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll 192 (605)
.+|+++|++|++.|++++|.++|+.|. .||+.|||+||.+|++.|++++|.++|++|.+.|+.||..||+++|
T Consensus 128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI 207 (1134)
T 3spa_A 128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAAL 207 (1134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHH
Confidence 689999999999999999999997753 5899999999999999999999999999999999999999999999
Q ss_pred HHHhccCCh-HHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhh
Q 007400 193 TICVKLEEL-KLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDE 245 (605)
Q Consensus 193 ~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 245 (605)
.++++.|+. +.|.+++++|.+.|+.||..+|++++....+.+-++.+.++..+
T Consensus 208 ~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~ 261 (1134)
T 3spa_A 208 QCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPT 261 (1134)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCC
T ss_pred HHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHhCcc
Confidence 999999985 78999999999999999999999999877765544444444333
No 43
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.62 E-value=1.6e-13 Score=127.70 Aligned_cols=224 Identities=10% Similarity=-0.036 Sum_probs=144.8
Q ss_pred ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhc----ccchHHHHHHHHHHHHcCCCCChhHHH
Q 007400 281 NPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACAS----IVSLKHGKQVHGFLIRTNFRSNTIVMS 356 (605)
Q Consensus 281 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 356 (605)
++.++..+...+...|++++|+..|++..+. .+...+..+...+.. .+++++|...+++..+.+
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--------- 72 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--------- 72 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---------
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---------
Confidence 4445555666666666666666666666552 223344444444444 445555555554444432
Q ss_pred HHHHHHHhcCChHHHHHHHHhcCCCCCcchHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc-
Q 007400 357 SLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQ----HGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTH- 431 (605)
Q Consensus 357 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~- 431 (605)
+...+..+...|.. .+++++|+..|++..+.+ +...+..+...|..
T Consensus 73 --------------------------~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~ 123 (273)
T 1ouv_A 73 --------------------------YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDG 123 (273)
T ss_dssp --------------------------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHC
T ss_pred --------------------------CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcC
Confidence 45555556666666 677777777777766643 55666666666666
Q ss_pred ---cCcHHHHHHHHHHchHhhCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHhCCCCCCHHHHHHHHHHHHh----c
Q 007400 432 ---SGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQ----AGCSDQLMNQLEKMPYEHDSYLWNALHGVCRI----H 500 (605)
Q Consensus 432 ---~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~ 500 (605)
.+++++|..+|++.. +.+ +...+..+...|.. .+++++|...+++.....+...+..++..+.. .
T Consensus 124 ~~~~~~~~~A~~~~~~a~-~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~ 199 (273)
T 1ouv_A 124 KVVTRDFKKAVEYFTKAC-DLN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGAT 199 (273)
T ss_dssp SSSCCCHHHHHHHHHHHH-HTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSC
T ss_pred CCcccCHHHHHHHHHHHH-hcC---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCC
Confidence 677777777777766 322 44556666666766 77777777777765323456677777777777 7
Q ss_pred CCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHh----cCCchHHHHHHHHHHhCC
Q 007400 501 GNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSA----LGKGRLVEKVRQLINERQ 551 (605)
Q Consensus 501 g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~ 551 (605)
+++++|+..|+++++..| +..+..++.+|.. .|++++|...+++..+.|
T Consensus 200 ~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 200 KNFKEALARYSKACELEN--GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp CCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred ccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 888888888888887755 6677788888888 888888888888877655
No 44
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.61 E-value=2.8e-14 Score=137.96 Aligned_cols=247 Identities=11% Similarity=0.106 Sum_probs=202.6
Q ss_pred ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhcccc-hHHHHHHHHHHHHcCCCCChhHHHHHH
Q 007400 281 NPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVS-LKHGKQVHGFLIRTNFRSNTIVMSSLI 359 (605)
Q Consensus 281 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~ 359 (605)
+...|..+...+.+.|++++|+..+++++... +-+...|..+..++...|+ +++|...++++++.+ +.+..+|..+.
T Consensus 96 ~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g 173 (382)
T 2h6f_A 96 FRDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRR 173 (382)
T ss_dssp HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHH
Confidence 34568888888899999999999999988753 3356677888888888896 999999999999887 66788899999
Q ss_pred HHHHhcCChHHHHHHHHhcC--CCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhc-cCcH
Q 007400 360 DMYSKCGCLNDGRQVFDLTD--NKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKP-DKITLAVILNACTH-SGLV 435 (605)
Q Consensus 360 ~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~-~g~~ 435 (605)
.++...|++++|+..|+.+. .+.+..+|..+..++...|++++|+..++++++ +.| +...|+.+..++.. .|..
T Consensus 174 ~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~--l~P~~~~a~~~lg~~l~~l~~~~ 251 (382)
T 2h6f_A 174 VLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLK--EDVRNNSVWNQRYFVISNTTGYN 251 (382)
T ss_dssp HHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhcCcc
Confidence 99999999999999998755 233778899999999999999999999999999 456 56789999988888 5654
Q ss_pred HHH-----HHHHHHchHhhCCCCC-HHHHHHHHHHHHhcC--ChHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcC-----
Q 007400 436 QEG-----LTYFESMTHDLGIIPN-QEHHACLIELLAQAG--CSDQLMNQLEKMPY-EHDSYLWNALHGVCRIHG----- 501 (605)
Q Consensus 436 ~~a-----~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~-~~~~~~~~~l~~~~~~~g----- 501 (605)
++| +..++++. .+.|+ ...|..+..++...| ++++|.+.+.++.. +.+..++..++.+|.+.|
T Consensus 252 ~eA~~~~el~~~~~Al---~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~~~~p~~~~al~~La~~~~~~~~~~~~ 328 (382)
T 2h6f_A 252 DRAVLEREVQYTLEMI---KLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCD 328 (382)
T ss_dssp SHHHHHHHHHHHHHHH---HHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCS
T ss_pred hHHHHHHHHHHHHHHH---HHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhccccc
Confidence 666 58888887 34565 678888999999888 68999998887743 345778888888888764
Q ss_pred ---C-HHHHHHHHHHH-HhcCCCCCchHHHHHHHHHhc
Q 007400 502 ---N-IDMGRKVVDQL-IDQNPQSSATHGLLSSIYSAL 534 (605)
Q Consensus 502 ---~-~~~A~~~~~~~-~~~~p~~~~~~~~l~~~~~~~ 534 (605)
+ +++|+++|+++ ++.+|.....|..++..+...
T Consensus 329 ~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~~ 366 (382)
T 2h6f_A 329 NKEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQSK 366 (382)
T ss_dssp SHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHH
Confidence 3 58999999999 899999999999888877643
No 45
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.61 E-value=6.8e-16 Score=159.01 Aligned_cols=147 Identities=7% Similarity=0.043 Sum_probs=114.4
Q ss_pred chHHHHHHHHHhcCChHHHHHHHhhC-------CCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChHHHHHHH
Q 007400 252 LTWTTMVSGYAKLGDMESASKLFNEM-------PEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCL 324 (605)
Q Consensus 252 ~~~~~li~~~~~~~~~~~A~~~~~~~-------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll 324 (605)
.+|+++|++||+.|++++|.++|.+| ..||+.+||+||.+|++.|++++|.++|++|...|+.||..||+++|
T Consensus 128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI 207 (1134)
T 3spa_A 128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAAL 207 (1134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHH
Confidence 35666666666666666666777554 35899999999999999999999999999999999999999999999
Q ss_pred HHHhcccch-HHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCCC----CCcchHHHHHHHHHHcC
Q 007400 325 CACASIVSL-KHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNK----ENSMLWNTMISALTQHG 398 (605)
Q Consensus 325 ~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~l~~~~~~~g 398 (605)
.++++.|+. +.|.+++++|.+.|+.||..+|++++....+.+-++.+.++...+..+ |.+.+...|...|.+.+
T Consensus 208 ~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f~p~~~~~~~~~t~~LL~dl~s~d~ 286 (1134)
T 3spa_A 208 QCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDG 286 (1134)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCCCCCCCCCCCCCCCTTTHHHHCCCS
T ss_pred HHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHhCcccCCCCCCcccccchHHHHHHHccCC
Confidence 999999985 789999999999999999999999998777754444444443333322 12334455556666544
No 46
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.60 E-value=2.3e-13 Score=126.58 Aligned_cols=225 Identities=10% Similarity=-0.032 Sum_probs=166.9
Q ss_pred CcchHHHHHHHHHhcCChHHHHHHHhhCCCC-ChhhHHHHHHHHHh----CCChHHHHHHHHHHHHCCCCCChHHHHHHH
Q 007400 250 DVLTWTTMVSGYAKLGDMESASKLFNEMPEK-NPVSWTTLIAGYTR----NGLGQKALELFTRMMILRIRPNQHTFSSCL 324 (605)
Q Consensus 250 ~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll 324 (605)
++.++..+...+...|++++|...|++..++ +..++..+...|.. .+++++|+..|++..+.+ +...+..+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg 81 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLLG 81 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHHH
Confidence 5667888889999999999999999988765 66788889999999 999999999999999875 667777777
Q ss_pred HHHhc----ccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCCCCCcchHHHHHHHHHH----
Q 007400 325 CACAS----IVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQ---- 396 (605)
Q Consensus 325 ~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~---- 396 (605)
..+.. .+++++|...+++..+.+ +..++..+...|..
T Consensus 82 ~~~~~g~~~~~~~~~A~~~~~~a~~~~-----------------------------------~~~a~~~lg~~~~~~~~~ 126 (273)
T 1ouv_A 82 NLYYSGQGVSQNTNKALQYYSKACDLK-----------------------------------YAEGCASLGGIYHDGKVV 126 (273)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTT-----------------------------------CHHHHHHHHHHHHHCSSS
T ss_pred HHHhCCCCcccCHHHHHHHHHHHHHcC-----------------------------------CccHHHHHHHHHHcCCCc
Confidence 77777 778888888887776654 33344445555555
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc----cCcHHHHHHHHHHchHhhCCCCCHHHHHHHHHHHHh----c
Q 007400 397 HGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTH----SGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQ----A 468 (605)
Q Consensus 397 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~ 468 (605)
.+++++|+..|++..+.+ +...+..+...+.. .+++++|..+|++.. +. .+...+..+..+|.. .
T Consensus 127 ~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~-~~---~~~~a~~~lg~~~~~g~~~~ 199 (273)
T 1ouv_A 127 TRDFKKAVEYFTKACDLN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKAC-DL---KDSPGCFNAGNMYHHGEGAT 199 (273)
T ss_dssp CCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH-HT---TCHHHHHHHHHHHHHTCSSC
T ss_pred ccCHHHHHHHHHHHHhcC---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-HC---CCHHHHHHHHHHHHcCCCCC
Confidence 666666777776666643 44555566666665 677777777777766 22 234566667777777 7
Q ss_pred CChHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCC
Q 007400 469 GCSDQLMNQLEKMPYEHDSYLWNALHGVCRI----HGNIDMGRKVVDQLIDQNPQ 519 (605)
Q Consensus 469 g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~p~ 519 (605)
+++++|.+.+++.....+...+..++..|.. .+++++|...|+++++..|+
T Consensus 200 ~~~~~A~~~~~~a~~~~~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~ 254 (273)
T 1ouv_A 200 KNFKEALARYSKACELENGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAK 254 (273)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCH
T ss_pred ccHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCCH
Confidence 7777777777765322346677778888887 88999999999999988874
No 47
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.58 E-value=1.6e-13 Score=127.58 Aligned_cols=227 Identities=9% Similarity=-0.042 Sum_probs=188.4
Q ss_pred HHHHHHHHHHhcccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCCCC-Ccc----hHHHHHH
Q 007400 318 HTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKE-NSM----LWNTMIS 392 (605)
Q Consensus 318 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~----~~~~l~~ 392 (605)
..+......+...|+++.|...++.+.+.. +.+...+..+..+|...|++++|...|+.....| +.. +|..+..
T Consensus 4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~ 82 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGK 82 (272)
T ss_dssp -CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHH
Confidence 345556778889999999999999999876 5566788899999999999999999999765432 322 3888999
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHchHhhCCCCC-HHHHHHHHHHHHhcCC
Q 007400 393 ALTQHGYDEQAIRLFHDMVRSSVKP-DKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPN-QEHHACLIELLAQAGC 470 (605)
Q Consensus 393 ~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~ 470 (605)
.+...|++++|+..+++..+. .| +..++..+..++...|++++|...++++. ...|+ ...+..+...+...++
T Consensus 83 ~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al---~~~~~~~~~~~~l~~~~~~~~~ 157 (272)
T 3u4t_A 83 ILMKKGQDSLAIQQYQAAVDR--DTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQI---RPTTTDPKVFYELGQAYYYNKE 157 (272)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--STTCTHHHHHHHHHHHHTTCHHHHHHHHGGGC---CSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHcccHHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHccCHHHHHHHHHHHh---hcCCCcHHHHHHHHHHHHHHHH
Confidence 999999999999999999984 45 56799999999999999999999999998 44565 6778888834445569
Q ss_pred hHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhcC---CCC-----CchHHHHHHHHHhcCCc
Q 007400 471 SDQLMNQLEKMP--YEHDSYLWNALHGVCRIHGN---IDMGRKVVDQLIDQN---PQS-----SATHGLLSSIYSALGKG 537 (605)
Q Consensus 471 ~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~---p~~-----~~~~~~l~~~~~~~g~~ 537 (605)
+++|.+.++++. .+.+...+..++.++...|+ +++|...++++++.. |+. ..++..++.+|...|++
T Consensus 158 ~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 237 (272)
T 3u4t_A 158 YVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDK 237 (272)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCH
Confidence 999999998862 34457888888889988888 889999999999884 532 25788899999999999
Q ss_pred hHHHHHHHHHHhC
Q 007400 538 RLVEKVRQLINER 550 (605)
Q Consensus 538 ~~a~~~~~~~~~~ 550 (605)
++|.+.++++.+.
T Consensus 238 ~~A~~~~~~al~~ 250 (272)
T 3u4t_A 238 VKADAAWKNILAL 250 (272)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc
Confidence 9999999999874
No 48
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.57 E-value=2.6e-13 Score=124.57 Aligned_cols=196 Identities=9% Similarity=-0.043 Sum_probs=149.8
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhcCC--CCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHH
Q 007400 352 TIVMSSLIDMYSKCGCLNDGRQVFDLTDN--KENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKP-DKITLAVILNA 428 (605)
Q Consensus 352 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~ 428 (605)
...+..+...+...|++++|.+.|+.+.. +.+...+..+...+...|++++|.+.++++.+. .| +...+..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALAS--DSRNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCcHHHHHHHHHH
Confidence 34556666677777777777777765432 225667777788888888888888888888774 34 55677778888
Q ss_pred HhccCcHHHHHHHHHHchHhhCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHH
Q 007400 429 CTHSGLVQEGLTYFESMTHDLGIIPN-QEHHACLIELLAQAGCSDQLMNQLEKMP--YEHDSYLWNALHGVCRIHGNIDM 505 (605)
Q Consensus 429 ~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~ 505 (605)
+...|++++|..+++++.. .+..|+ ...+..++..+...|++++|...+++.. .+.+...+..++..+...|++++
T Consensus 115 ~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 193 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQ-DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVP 193 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTT-CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhHHHHHHHHHHHHHh-CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHH
Confidence 8888888888888888873 234554 5677788888888888888888887752 23467778888888888889999
Q ss_pred HHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 007400 506 GRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINER 550 (605)
Q Consensus 506 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 550 (605)
|...++++++..|++...+..++.++...|++++|.++++++.+.
T Consensus 194 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 194 ARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 999998888888888888888888888889999988888888764
No 49
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.57 E-value=1.1e-13 Score=123.58 Aligned_cols=205 Identities=16% Similarity=0.063 Sum_probs=97.9
Q ss_pred ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhcccchHHHHHHHHHHHHcCCCCChhHHHHHHH
Q 007400 281 NPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLID 360 (605)
Q Consensus 281 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 360 (605)
++..+..+...+.+.|++++|+..|++..+.. +.+...+..+..++...|++++|...++++++.. +.+...+..+..
T Consensus 4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~ 81 (217)
T 2pl2_A 4 AEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLSE 81 (217)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHH
Confidence 33455555666666666666666666665532 2334455555555555566666665555555544 333444444444
Q ss_pred HHHhcCChHHHHHHHHhcCCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHH
Q 007400 361 MYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPD-KITLAVILNACTHSGLVQEGL 439 (605)
Q Consensus 361 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~ 439 (605)
++...+.. .+. .+...|++++|+..+++.++ +.|+ ...+..+..++...|++++|+
T Consensus 82 ~~~~~~~~------------~~~---------~~~~~g~~~~A~~~~~~al~--~~P~~~~~~~~lg~~~~~~g~~~~A~ 138 (217)
T 2pl2_A 82 AYVALYRQ------------AED---------RERGKGYLEQALSVLKDAER--VNPRYAPLHLQRGLVYALLGERDKAE 138 (217)
T ss_dssp HHHHHHHT------------CSS---------HHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHhhhh------------hhh---------hcccccCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHcCChHHHH
Confidence 44444000 000 00011555555555555555 3342 345555555555566666666
Q ss_pred HHHHHchHhhCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 007400 440 TYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMP--YEHDSYLWNALHGVCRIHGNIDMGRKVVDQL 513 (605)
Q Consensus 440 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 513 (605)
..|+++. +.. .+...+..+..+|...|++++|+..+++.. .+.+...+..++.++...|++++|...++++
T Consensus 139 ~~~~~al-~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 139 ASLKQAL-ALE--DTPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHH-HHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC--------------
T ss_pred HHHHHHH-hcc--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 6665555 223 445555555556666666666665555541 2334555555555666666666666655554
No 50
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.57 E-value=1.2e-13 Score=119.86 Aligned_cols=164 Identities=13% Similarity=0.108 Sum_probs=142.3
Q ss_pred CcchHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHchHhhCCCCC-HHHHHH
Q 007400 383 NSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKP-DKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPN-QEHHAC 460 (605)
Q Consensus 383 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~ 460 (605)
++..|..+...|...|++++|+..|++.++ +.| +..++..+..++...|++++|...++.+.. ..|+ ...+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~ 78 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLK--ADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVV---LDTTSAEAYYI 78 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCchhHHHHHH
Confidence 566788899999999999999999999988 456 456888899999999999999999998873 2343 667788
Q ss_pred HHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCch
Q 007400 461 LIELLAQAGCSDQLMNQLEKMP--YEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGR 538 (605)
Q Consensus 461 l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 538 (605)
+...+...++++.|.+.+++.. .+.+...+..++.++...|++++|++.|+++++.+|+++.++..++.+|.+.|+++
T Consensus 79 ~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~ 158 (184)
T 3vtx_A 79 LGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRD 158 (184)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHH
Confidence 8888999999999999988762 34578889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCC
Q 007400 539 LVEKVRQLINERQ 551 (605)
Q Consensus 539 ~a~~~~~~~~~~~ 551 (605)
+|++.|++..+..
T Consensus 159 ~A~~~~~~al~~~ 171 (184)
T 3vtx_A 159 EAVKYFKKALEKE 171 (184)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhCC
Confidence 9999999987753
No 51
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.57 E-value=1.3e-13 Score=133.33 Aligned_cols=225 Identities=12% Similarity=0.084 Sum_probs=192.8
Q ss_pred HHHHHHHHHHhcccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCC-hHHHHHHHHhcCC--CCCcchHHHHHHHH
Q 007400 318 HTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGC-LNDGRQVFDLTDN--KENSMLWNTMISAL 394 (605)
Q Consensus 318 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~--~~~~~~~~~l~~~~ 394 (605)
..|..+...+...|++++|...++++++.. +.+..+|..+..++...|+ +++|+..|++... +.+...|..+..++
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~ 176 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLV 176 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 456667778888999999999999999987 6678899999999999997 9999999997652 23778999999999
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHchHhhCCCCC-HHHHHHHHHHHHh-cCCh
Q 007400 395 TQHGYDEQAIRLFHDMVRSSVKP-DKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPN-QEHHACLIELLAQ-AGCS 471 (605)
Q Consensus 395 ~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~-~g~~ 471 (605)
...|++++|+..|+++++ +.| +...|..+..++...|++++|+..++++. .+.|+ ...|+.+..++.+ .|..
T Consensus 177 ~~~g~~~eAl~~~~kal~--ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al---~l~P~~~~a~~~lg~~l~~l~~~~ 251 (382)
T 2h6f_A 177 EWLRDPSQELEFIADILN--QDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLL---KEDVRNNSVWNQRYFVISNTTGYN 251 (382)
T ss_dssp HHHTCCTTHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHH---HHCTTCHHHHHHHHHHHHHTTCSC
T ss_pred HHccCHHHHHHHHHHHHH--hCccCHHHHHHHHHHHHHcCChHHHHHHHHHHH---HhCCCCHHHHHHHHHHHHHhcCcc
Confidence 999999999999999999 566 56799999999999999999999999999 34565 7899999999999 6665
Q ss_pred HHH-----HHHHHhC-C-CCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcC-------
Q 007400 472 DQL-----MNQLEKM-P-YEHDSYLWNALHGVCRIHG--NIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALG------- 535 (605)
Q Consensus 472 ~~A-----~~~~~~~-~-~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g------- 535 (605)
++| ++.+++. . .+.+...|..++.++...| ++++|++.++++ +..|++..++..++++|.+.|
T Consensus 252 ~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~ 330 (382)
T 2h6f_A 252 DRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNK 330 (382)
T ss_dssp SHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSH
T ss_pred hHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccch
Confidence 777 4667665 2 3457889999999998888 689999999998 889999999999999999975
Q ss_pred --CchHHHHHHHHH-Hh
Q 007400 536 --KGRLVEKVRQLI-NE 549 (605)
Q Consensus 536 --~~~~a~~~~~~~-~~ 549 (605)
.+++|+.+++++ .+
T Consensus 331 ~~~~~~A~~~~~~l~~~ 347 (382)
T 2h6f_A 331 EDILNKALELCEILAKE 347 (382)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 258999999988 54
No 52
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.57 E-value=3.7e-14 Score=129.43 Aligned_cols=144 Identities=11% Similarity=0.072 Sum_probs=72.9
Q ss_pred cchHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHchHhhCCCCCHHHHHHHHH
Q 007400 384 SMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIE 463 (605)
Q Consensus 384 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 463 (605)
..++..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++... .+.+...+..++.
T Consensus 91 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~ 167 (243)
T 2q7f_A 91 ATAYYGAGNVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVEL--NENDTEARFQFGM 167 (243)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCccHHHHHHHHH
Confidence 3444445555555555555555555555421 123445555555555555555555555555421 1112444555555
Q ss_pred HHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHH
Q 007400 464 LLAQAGCSDQLMNQLEKMP--YEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSI 530 (605)
Q Consensus 464 ~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 530 (605)
.+.+.|++++|...++++. .+.+..++..++.++...|++++|...++++++..|++...+..++.+
T Consensus 168 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l 236 (243)
T 2q7f_A 168 CLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLL 236 (243)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHTC-
T ss_pred HHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHHHH
Confidence 5555555555555555431 123445555555555555666666666666655555555555544443
No 53
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.57 E-value=4.9e-13 Score=122.70 Aligned_cols=207 Identities=11% Similarity=0.044 Sum_probs=137.6
Q ss_pred hhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhcccchHHHHHHHHHHHHcCCCCChhHHHHHHHH
Q 007400 282 PVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDM 361 (605)
Q Consensus 282 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 361 (605)
...|..+...+...|++++|+..|+++.+.. +.+...+..+...+...|++++|...++++.+.. +
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~------------ 102 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-S------------ 102 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T------------
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-c------------
Confidence 4456666666777777777777777666532 2234444444455555555555555555544432 1
Q ss_pred HHhcCChHHHHHHHHhcCCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHH
Q 007400 362 YSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPD-KITLAVILNACTHSGLVQEGLT 440 (605)
Q Consensus 362 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~ 440 (605)
.+...+..+...+...|++++|.+.++++...+..|+ ...+..+..++...|++++|..
T Consensus 103 --------------------~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 162 (252)
T 2ho1_A 103 --------------------RNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKE 162 (252)
T ss_dssp --------------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred --------------------CcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHH
Confidence 1445566666667777777777777777766333443 3466677777777778888888
Q ss_pred HHHHchHhhCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 007400 441 YFESMTHDLGIIP-NQEHHACLIELLAQAGCSDQLMNQLEKMP--YEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQN 517 (605)
Q Consensus 441 ~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 517 (605)
.++++... .| +...+..++..+...|++++|...++++. .+.+...+..++..+...|++++|...++++++..
T Consensus 163 ~~~~~~~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 163 YFEKSLRL---NRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY 239 (252)
T ss_dssp HHHHHHHH---CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHhc---CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 77777622 23 36677778888888888888888887752 34567778888888899999999999999999999
Q ss_pred CCCCchHH
Q 007400 518 PQSSATHG 525 (605)
Q Consensus 518 p~~~~~~~ 525 (605)
|+++....
T Consensus 240 p~~~~~~~ 247 (252)
T 2ho1_A 240 PGSLEYQE 247 (252)
T ss_dssp TTSHHHHH
T ss_pred CCCHHHHH
Confidence 97766544
No 54
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.56 E-value=4.3e-13 Score=120.61 Aligned_cols=197 Identities=11% Similarity=0.026 Sum_probs=153.4
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhcCC--CCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHH
Q 007400 351 NTIVMSSLIDMYSKCGCLNDGRQVFDLTDN--KENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKP-DKITLAVILN 427 (605)
Q Consensus 351 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~ 427 (605)
+...+..+...+...|++++|.+.|+.... +.+...+..+...+...|++++|...++++.+. .| +..++..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~ 84 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSI--KPDSAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHh--CCCChHHHHHHHH
Confidence 345566667777777777777777765432 225667777888888888888888888888874 34 5667888888
Q ss_pred HHhcc-CcHHHHHHHHHHchHhhCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCH
Q 007400 428 ACTHS-GLVQEGLTYFESMTHDLGIIPN-QEHHACLIELLAQAGCSDQLMNQLEKMP--YEHDSYLWNALHGVCRIHGNI 503 (605)
Q Consensus 428 ~~~~~-g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~ 503 (605)
.+... |++++|...++++.. .+..|+ ...+..++.++...|++++|...++++. .+.+...+..++..+...|++
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~ 163 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALA-DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQL 163 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHT-STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHhcCcHHHHHHHHHHHHc-CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCH
Confidence 88888 888888888888873 234444 5677888888888899999888888752 234577888888889999999
Q ss_pred HHHHHHHHHHHhcCC-CCCchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 007400 504 DMGRKVVDQLIDQNP-QSSATHGLLSSIYSALGKGRLVEKVRQLINER 550 (605)
Q Consensus 504 ~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 550 (605)
++|...++++++..| ++...+..++.++...|+.++|..+++.+.+.
T Consensus 164 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 164 GDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 999999999999988 88888888888888999999999988887653
No 55
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.54 E-value=1.3e-13 Score=125.75 Aligned_cols=197 Identities=12% Similarity=0.077 Sum_probs=154.2
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHHhcCC--CCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHH
Q 007400 350 SNTIVMSSLIDMYSKCGCLNDGRQVFDLTDN--KENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKP-DKITLAVIL 426 (605)
Q Consensus 350 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~l~ 426 (605)
.....+..+...+...|++++|...|+.+.. +.+...+..+...+...|++++|+..++++.+. .| +..++..+.
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la 98 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALEL--DSSAATAYYGAG 98 (243)
T ss_dssp ---------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCcchHHHHHHH
Confidence 3445666777788888888888888887543 236678888899999999999999999999984 44 567899999
Q ss_pred HHHhccCcHHHHHHHHHHchHhhCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHH
Q 007400 427 NACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMP--YEHDSYLWNALHGVCRIHGNID 504 (605)
Q Consensus 427 ~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~ 504 (605)
..+...|++++|...++++.+. .+.+...+..++..+.+.|++++|...++++. .+.+...+..++..+...|+++
T Consensus 99 ~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 176 (243)
T 2q7f_A 99 NVYVVKEMYKEAKDMFEKALRA--GMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLD 176 (243)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--TCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCH
T ss_pred HHHHHhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHH
Confidence 9999999999999999999833 23357788999999999999999999998862 3457888999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 007400 505 MGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINER 550 (605)
Q Consensus 505 ~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 550 (605)
+|...++++++..|++..++..++.+|...|++++|...++++.+.
T Consensus 177 ~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 177 EALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 9999999999999999999999999999999999999999998774
No 56
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.54 E-value=8.5e-14 Score=140.00 Aligned_cols=207 Identities=8% Similarity=-0.012 Sum_probs=165.1
Q ss_pred HHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCh-HHHHHHHHhcC--CCCCcchHHHHHHHHHHcCCHHHHHHHHHHH
Q 007400 334 KHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCL-NDGRQVFDLTD--NKENSMLWNTMISALTQHGYDEQAIRLFHDM 410 (605)
Q Consensus 334 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 410 (605)
+.+...+....... +.+...+..+...|...|++ ++|++.|++.. .+.+...|..+...|...|++++|+..|++.
T Consensus 85 ~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~a 163 (474)
T 4abn_A 85 EKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGA 163 (474)
T ss_dssp HHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34444444433322 34556666666667777777 77777776543 1225678888888999999999999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHhcc---------CcHHHHHHHHHHchHhhCCCCC-HHHHHHHHHHHHhc--------CChH
Q 007400 411 VRSSVKPDKITLAVILNACTHS---------GLVQEGLTYFESMTHDLGIIPN-QEHHACLIELLAQA--------GCSD 472 (605)
Q Consensus 411 ~~~~~~p~~~~~~~l~~~~~~~---------g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~--------g~~~ 472 (605)
++ +.|+...+..+..++... |++++|...++++.. ..|+ ...+..+..+|... |+++
T Consensus 164 l~--~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 164 LT--HCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQ---MDVLDGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HT--TCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred Hh--hCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHHHHhhccccchHH
Confidence 88 567878888899999998 999999999999883 3454 77888999999888 9999
Q ss_pred HHHHHHHhCC--CC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHH
Q 007400 473 QLMNQLEKMP--YE---HDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQL 546 (605)
Q Consensus 473 ~A~~~~~~~~--~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 546 (605)
+|++.|++.. .+ .+...|..++.+|...|++++|...|+++++++|+++.++..++.++...|++++|.+.+.+
T Consensus 239 ~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 239 QALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGK 317 (474)
T ss_dssp HHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999998863 23 47889999999999999999999999999999999999999999999999999999875543
No 57
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.54 E-value=1.1e-12 Score=117.86 Aligned_cols=209 Identities=12% Similarity=0.030 Sum_probs=134.4
Q ss_pred hhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhcccchHHHHHHHHHHHHcCCCCChhHHHHHHHH
Q 007400 282 PVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDM 361 (605)
Q Consensus 282 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 361 (605)
+..+..++..+...|++++|+..|+++.+.. +.+...+..+...+...|++++|...++.+.+..
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-------------- 72 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-------------- 72 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC--------------
Confidence 3455555666666666666666666655432 2223344444444444444444444444444332
Q ss_pred HHhcCChHHHHHHHHhcCCCCCcchHHHHHHHHHHc-CCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHH
Q 007400 362 YSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQH-GYDEQAIRLFHDMVRSSVKPD-KITLAVILNACTHSGLVQEGL 439 (605)
Q Consensus 362 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~ 439 (605)
+.+..++..++..+... |++++|...++++.+.+..|+ ...+..+..++...|++++|.
T Consensus 73 -------------------~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 133 (225)
T 2vq2_A 73 -------------------PDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAE 133 (225)
T ss_dssp -------------------TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHH
T ss_pred -------------------CCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHH
Confidence 12445566666777777 777777777777776333343 356777777777788888888
Q ss_pred HHHHHchHhhCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHhCC--CC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 007400 440 TYFESMTHDLGIIPN-QEHHACLIELLAQAGCSDQLMNQLEKMP--YE-HDSYLWNALHGVCRIHGNIDMGRKVVDQLID 515 (605)
Q Consensus 440 ~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 515 (605)
..++++... .|+ ...+..++.++.+.|++++|...++++. .+ .+...+..+...+...|+.+.|..+++.+.+
T Consensus 134 ~~~~~~~~~---~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 134 AYLKRSLAA---QPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp HHHHHHHHH---STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHh---CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 888777622 333 6677777888888888888888887752 23 5666777777788889999999999999998
Q ss_pred cCCCCCchHHHH
Q 007400 516 QNPQSSATHGLL 527 (605)
Q Consensus 516 ~~p~~~~~~~~l 527 (605)
..|+++.....+
T Consensus 211 ~~p~~~~~~~~l 222 (225)
T 2vq2_A 211 NFPYSEELQTVL 222 (225)
T ss_dssp HCTTCHHHHHHH
T ss_pred hCCCCHHHHHHh
Confidence 999777665443
No 58
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.52 E-value=1.3e-13 Score=128.46 Aligned_cols=238 Identities=8% Similarity=-0.058 Sum_probs=168.5
Q ss_pred cCChHHHHHHHhhCCCC-------ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhcccchHHH
Q 007400 264 LGDMESASKLFNEMPEK-------NPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHG 336 (605)
Q Consensus 264 ~~~~~~A~~~~~~~~~~-------~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a 336 (605)
.|++++|+..|+++.+. +..++..++..+...|++++|+..|+++.+.. +.+...+..+...+...|++++|
T Consensus 18 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A 96 (275)
T 1xnf_A 18 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAA 96 (275)
T ss_dssp CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHH
T ss_pred cchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHH
Confidence 34555666666655431 35567778888888888888888888887753 34567788888888888888888
Q ss_pred HHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCC-CCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 007400 337 KQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDN-KENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSV 415 (605)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 415 (605)
...++.+.+.. +.+..++..+..+|...|++++|...|+.+.. .|+.......+..+...|++++|...+++.....
T Consensus 97 ~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~- 174 (275)
T 1xnf_A 97 YEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS- 174 (275)
T ss_dssp HHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS-
T ss_pred HHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-
Confidence 88888888865 45677888888888899999999988887652 2344444444555567789999999998877742
Q ss_pred CCCHHHHHHHHHHHhccCcHHHHHHHHHHchHhhCCCCC-----HHHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHH
Q 007400 416 KPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPN-----QEHHACLIELLAQAGCSDQLMNQLEKM-PYEHDSYL 489 (605)
Q Consensus 416 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~ 489 (605)
+++...+ .++..+...++.++|...++++. ...|+ ...+..++.+|.+.|++++|...+++. ...|+.
T Consensus 175 ~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-- 248 (275)
T 1xnf_A 175 DKEQWGW-NIVEFYLGNISEQTLMERLKADA---TDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHN-- 248 (275)
T ss_dssp CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHC---CSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTT--
T ss_pred CcchHHH-HHHHHHHHhcCHHHHHHHHHHHh---cccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchh--
Confidence 3343344 36667777888888998888876 33332 467888899999999999999999886 333422
Q ss_pred HHHHHHHHHhcCCHHHHHHHH
Q 007400 490 WNALHGVCRIHGNIDMGRKVV 510 (605)
Q Consensus 490 ~~~l~~~~~~~g~~~~A~~~~ 510 (605)
+.....++...|++++|++.+
T Consensus 249 ~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 249 FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp CHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHhhHHHH
Confidence 223355667778888887776
No 59
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.52 E-value=2.4e-13 Score=134.55 Aligned_cols=90 Identities=12% Similarity=0.039 Sum_probs=40.7
Q ss_pred HHHHHHHHhcCChHHHHHHHhhCCC--C-C----hhhHHHHHHHHHhCCChHHHHHHHHHHHHC----CCCC-ChHHHHH
Q 007400 255 TTMVSGYAKLGDMESASKLFNEMPE--K-N----PVSWTTLIAGYTRNGLGQKALELFTRMMIL----RIRP-NQHTFSS 322 (605)
Q Consensus 255 ~~li~~~~~~~~~~~A~~~~~~~~~--~-~----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~----g~~p-~~~~~~~ 322 (605)
......+...|++++|...|++..+ | + ...+..+...+...|++++|+..+++.... +-.| ...++..
T Consensus 13 ~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 92 (406)
T 3sf4_A 13 ALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGN 92 (406)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHH
Confidence 3444445555555555555554432 1 1 123444555555555555555555554321 1111 1223344
Q ss_pred HHHHHhcccchHHHHHHHHHHH
Q 007400 323 CLCACASIVSLKHGKQVHGFLI 344 (605)
Q Consensus 323 ll~~~~~~~~~~~a~~~~~~~~ 344 (605)
+...+...|+++.|...+.++.
T Consensus 93 la~~~~~~g~~~~A~~~~~~al 114 (406)
T 3sf4_A 93 LGNTLKVLGNFDEAIVCCQRHL 114 (406)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHH
Confidence 4444445555555555554443
No 60
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.52 E-value=1.3e-13 Score=136.80 Aligned_cols=264 Identities=8% Similarity=0.003 Sum_probs=183.2
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-h----HHHHHHHHHHhcccchHHHHHHHHHHHHc----C-CCCChhH
Q 007400 285 WTTLIAGYTRNGLGQKALELFTRMMILRIRPN-Q----HTFSSCLCACASIVSLKHGKQVHGFLIRT----N-FRSNTIV 354 (605)
Q Consensus 285 ~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~-~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~ 354 (605)
+..+...+...|++++|+..|+++.+.+ |+ . ..+..+...+...|+++.|...++++.+. + .+....+
T Consensus 51 l~~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 128 (411)
T 4a1s_A 51 LALEGERLCNAGDCRAGVAFFQAAIQAG--TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKS 128 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHHhc--ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHH
Confidence 3445566677777777777777776642 32 2 35566666677777777777777766543 1 1223455
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhcCC-------C-CCcchHHHHHHHHHHcCC-----------------HHHHHHHHHH
Q 007400 355 MSSLIDMYSKCGCLNDGRQVFDLTDN-------K-ENSMLWNTMISALTQHGY-----------------DEQAIRLFHD 409 (605)
Q Consensus 355 ~~~l~~~~~~~g~~~~A~~~~~~~~~-------~-~~~~~~~~l~~~~~~~g~-----------------~~~a~~~~~~ 409 (605)
+..+...|...|++++|...|+.... . ....++..+...|...|+ +++|+..+++
T Consensus 129 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~ 208 (411)
T 4a1s_A 129 SGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQE 208 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHH
Confidence 66777777788888888777765331 1 123467777778888888 8888888877
Q ss_pred HHHC----CCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHchHhhCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHh
Q 007400 410 MVRS----SVKP-DKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPN----QEHHACLIELLAQAGCSDQLMNQLEK 480 (605)
Q Consensus 410 m~~~----~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~ 480 (605)
..+. +-.| ...++..+...+...|++++|...+++......-.++ ...+..+..+|...|++++|...+++
T Consensus 209 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 288 (411)
T 4a1s_A 209 NLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKR 288 (411)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 6542 1112 1247777888888899999999998887632211111 23778888889999999999988876
Q ss_pred CC----CCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC------CchHHHHHHHHHhcCCchHHHHHHHH
Q 007400 481 MP----YEH----DSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQS------SATHGLLSSIYSALGKGRLVEKVRQL 546 (605)
Q Consensus 481 ~~----~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~a~~~~~~ 546 (605)
.. ... ...++..++..+...|++++|...++++++..+.. ..++..++.+|...|++++|...+++
T Consensus 289 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 368 (411)
T 4a1s_A 289 TLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQ 368 (411)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 52 111 14567788889999999999999999999874432 34788899999999999999999988
Q ss_pred HHhC
Q 007400 547 INER 550 (605)
Q Consensus 547 ~~~~ 550 (605)
..+.
T Consensus 369 al~~ 372 (411)
T 4a1s_A 369 HLQL 372 (411)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8653
No 61
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.52 E-value=7.7e-11 Score=121.62 Aligned_cols=220 Identities=6% Similarity=-0.029 Sum_probs=162.6
Q ss_pred HHHHHHHHHHHHCCCCCChHHHHHHHHHHhcccchHHHH-HHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHh
Q 007400 299 QKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGK-QVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDL 377 (605)
Q Consensus 299 ~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 377 (605)
+.+..+|++.+.. ++-+...|...+.-+...|+.+.|. .+++.+.... +.+...+...+....+.|+++.|.++|+.
T Consensus 326 ~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~-P~s~~Lwl~~a~~ee~~~~~e~aR~iyek 403 (679)
T 4e6h_A 326 ARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCI-PNSAVLAFSLSEQYELNTKIPEIETTILS 403 (679)
T ss_dssp HHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 3456677777664 3445666666677777778888886 8888888754 56667777888888888999999988886
Q ss_pred cCCC------------CC------------cchHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc-
Q 007400 378 TDNK------------EN------------SMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHS- 432 (605)
Q Consensus 378 ~~~~------------~~------------~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~- 432 (605)
+... |+ ...|...+....+.|+.+.|..+|.+..+.-..+....|...+..-.+.
T Consensus 404 ~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~ 483 (679)
T 4e6h_A 404 CIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHIS 483 (679)
T ss_dssp HHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTT
T ss_pred HHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhC
Confidence 5431 32 2367888888888899999999999998851112334444433333333
Q ss_pred CcHHHHHHHHHHchHhhCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhCC-CCC----CHHHHHHHHHHHHhcCCHHHHH
Q 007400 433 GLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMP-YEH----DSYLWNALHGVCRIHGNIDMGR 507 (605)
Q Consensus 433 g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~----~~~~~~~l~~~~~~~g~~~~A~ 507 (605)
++.+.|..+|+...+.. .-+...+...++.....|+.+.|..+|++.. ..| ....|..++..-...|+.+.+.
T Consensus 484 ~d~e~Ar~ife~~Lk~~--p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~ 561 (679)
T 4e6h_A 484 KDTKTACKVLELGLKYF--ATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVR 561 (679)
T ss_dssp SCCHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHH
T ss_pred CCHHHHHHHHHHHHHHC--CCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 55899999999998553 3345667788888889999999999999863 223 3467888888889999999999
Q ss_pred HHHHHHHhcCCCCCc
Q 007400 508 KVVDQLIDQNPQSSA 522 (605)
Q Consensus 508 ~~~~~~~~~~p~~~~ 522 (605)
.+.+++.+..|+++.
T Consensus 562 ~v~~R~~~~~P~~~~ 576 (679)
T 4e6h_A 562 TLEKRFFEKFPEVNK 576 (679)
T ss_dssp HHHHHHHHHSTTCCH
T ss_pred HHHHHHHHhCCCCcH
Confidence 999999999996653
No 62
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.52 E-value=7.5e-13 Score=130.94 Aligned_cols=303 Identities=11% Similarity=0.001 Sum_probs=190.5
Q ss_pred hhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCC---hhHHHHHHHHHHhcCChHHHHHHHhhcCCCCcchHHHHHHHH
Q 007400 185 EFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSN---VVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGY 261 (605)
Q Consensus 185 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~ 261 (605)
...+......+...|++++|...++++.+..+... ..++..+..+|...|++++|...+++..
T Consensus 9 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al-------------- 74 (406)
T 3sf4_A 9 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDL-------------- 74 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH--------------
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH--------------
Confidence 33444555556666677777777766666543211 2456667777777788887776665432
Q ss_pred HhcCChHHHHHHHhhCCCC--ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCC-CCC----hHHHHHHHHHHhcccc--
Q 007400 262 AKLGDMESASKLFNEMPEK--NPVSWTTLIAGYTRNGLGQKALELFTRMMILRI-RPN----QHTFSSCLCACASIVS-- 332 (605)
Q Consensus 262 ~~~~~~~~A~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~-~p~----~~~~~~ll~~~~~~~~-- 332 (605)
.+......+ ...++..+...+...|++++|+..+++...... .++ ..++..+...+...|+
T Consensus 75 ----------~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 144 (406)
T 3sf4_A 75 ----------TLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSF 144 (406)
T ss_dssp ----------HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTC
T ss_pred ----------HHHHhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcc
Confidence 333333221 244677778888888888888888887765210 011 2345555566666666
Q ss_pred ------------------hHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCCCC-CcchHHHHHHH
Q 007400 333 ------------------LKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKE-NSMLWNTMISA 393 (605)
Q Consensus 333 ------------------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~l~~~ 393 (605)
++.|...+....+ ++......+ ...++..+...
T Consensus 145 ~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~----------------------------~~~~~~~~~~~~~~~~~la~~ 196 (406)
T 3sf4_A 145 GCPGPQDVGEFPEEVRDALQAAVDFYEENLS----------------------------LVTALGDRAAQGRAFGNLGNT 196 (406)
T ss_dssp C-------CCCCHHHHHHHHHHHHHHHHHHH----------------------------HHHHTTCHHHHHHHHHHHHHH
T ss_pred cccccchhhhhhhhHHHHHHHHHHHHHHHHH----------------------------HHHhccCcHHHHHHHHHHHHH
Confidence 5555555444332 111111111 12356666677
Q ss_pred HHHcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHhccCcHHHHHHHHHHchHhhCCCCC----HHHHHHHHHH
Q 007400 394 LTQHGYDEQAIRLFHDMVRSSV-KPD----KITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPN----QEHHACLIEL 464 (605)
Q Consensus 394 ~~~~g~~~~a~~~~~~m~~~~~-~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~ 464 (605)
+...|++++|...+++..+... .++ ..++..+..++...|++++|...+++......-.++ ..++..+...
T Consensus 197 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 276 (406)
T 3sf4_A 197 HYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNT 276 (406)
T ss_dssp HHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHH
Confidence 7777777777777777654210 112 136777777888888888888888877632111111 4567788888
Q ss_pred HHhcCChHHHHHHHHhCC----CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC------CCCchHHHHHHH
Q 007400 465 LAQAGCSDQLMNQLEKMP----YEHD----SYLWNALHGVCRIHGNIDMGRKVVDQLIDQNP------QSSATHGLLSSI 530 (605)
Q Consensus 465 ~~~~g~~~~A~~~~~~~~----~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p------~~~~~~~~l~~~ 530 (605)
|...|++++|...+++.. ..++ ..++..++..+...|++++|...++++++..+ ....++..++.+
T Consensus 277 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~ 356 (406)
T 3sf4_A 277 YTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDL 356 (406)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHH
Confidence 888899988888887652 1122 55777889999999999999999999998732 234577788999
Q ss_pred HHhcCCchH
Q 007400 531 YSALGKGRL 539 (605)
Q Consensus 531 ~~~~g~~~~ 539 (605)
+...|+...
T Consensus 357 ~~~~g~~~~ 365 (406)
T 3sf4_A 357 QMVLGLSYS 365 (406)
T ss_dssp HHHHHTTSC
T ss_pred HHHhhHhHH
Confidence 988887643
No 63
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.51 E-value=4.9e-13 Score=128.38 Aligned_cols=265 Identities=9% Similarity=0.009 Sum_probs=189.7
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC----hHHHHHHHHHHhcccchHHHHHHHHHHHHc----CC-CCChhHH
Q 007400 285 WTTLIAGYTRNGLGQKALELFTRMMILRIRPN----QHTFSSCLCACASIVSLKHGKQVHGFLIRT----NF-RSNTIVM 355 (605)
Q Consensus 285 ~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~ 355 (605)
+......+...|++++|+..|+++.+.. +.+ ...+..+...+...|+++.|...++++.+. +. +....++
T Consensus 8 l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 86 (338)
T 3ro2_A 8 LALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKAS 86 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHH
Confidence 3445566777777888877777777642 112 245666677777777888777777766542 11 1224566
Q ss_pred HHHHHHHHhcCChHHHHHHHHhcCC----CCC----cchHHHHHHHHHHcCC--------------------HHHHHHHH
Q 007400 356 SSLIDMYSKCGCLNDGRQVFDLTDN----KEN----SMLWNTMISALTQHGY--------------------DEQAIRLF 407 (605)
Q Consensus 356 ~~l~~~~~~~g~~~~A~~~~~~~~~----~~~----~~~~~~l~~~~~~~g~--------------------~~~a~~~~ 407 (605)
..+...|...|++++|...++.... .++ ..++..+...+...|+ +++|...+
T Consensus 87 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~ 166 (338)
T 3ro2_A 87 GNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLY 166 (338)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHH
Confidence 7777888888888888888775431 112 2367777888888888 88888888
Q ss_pred HHHHHC----CCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHchHhhCCCCC----HHHHHHHHHHHHhcCChHHHHHHH
Q 007400 408 HDMVRS----SVKPD-KITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPN----QEHHACLIELLAQAGCSDQLMNQL 478 (605)
Q Consensus 408 ~~m~~~----~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~ 478 (605)
++.... +..|. ..++..+...+...|++++|...++++.....-.++ ..++..++..+...|++++|...+
T Consensus 167 ~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 246 (338)
T 3ro2_A 167 EENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYY 246 (338)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 876542 11121 247778888899999999999999988632111111 347888899999999999999998
Q ss_pred HhCC----CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC------CchHHHHHHHHHhcCCchHHHHHH
Q 007400 479 EKMP----YEHD----SYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQS------SATHGLLSSIYSALGKGRLVEKVR 544 (605)
Q Consensus 479 ~~~~----~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~a~~~~ 544 (605)
++.. ..++ ..++..++..+...|++++|...++++++..|.. ..++..++.+|...|++++|...+
T Consensus 247 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 326 (338)
T 3ro2_A 247 KKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFA 326 (338)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHH
Confidence 8752 1122 4567788899999999999999999999874433 347889999999999999999999
Q ss_pred HHHHhC
Q 007400 545 QLINER 550 (605)
Q Consensus 545 ~~~~~~ 550 (605)
++..+.
T Consensus 327 ~~a~~~ 332 (338)
T 3ro2_A 327 EKHLEI 332 (338)
T ss_dssp HHHHHC
T ss_pred HHHHHH
Confidence 988764
No 64
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.47 E-value=7.5e-13 Score=138.31 Aligned_cols=162 Identities=13% Similarity=0.128 Sum_probs=145.0
Q ss_pred CcchHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHchHhhCCCCC-HHHHHH
Q 007400 383 NSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPD-KITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPN-QEHHAC 460 (605)
Q Consensus 383 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~ 460 (605)
+..+|+.+...+.+.|++++|++.|++.++ +.|+ ..++..+..+|.+.|++++|+..|+++. .+.|+ ...+..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~--l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al---~l~P~~~~a~~n 82 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALE--VFPEFAAAHSNLASVLQQQGKLQEALMHYKEAI---RISPTFADAYSN 82 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH---HHCTTCHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH---HhCCCCHHHHHH
Confidence 456788899999999999999999999998 5675 5689999999999999999999999998 44676 788999
Q ss_pred HHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCch
Q 007400 461 LIELLAQAGCSDQLMNQLEKMP--YEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGR 538 (605)
Q Consensus 461 l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 538 (605)
+..+|.+.|++++|++.|++.. .+.+..+|..++.++...|++++|++.|+++++++|+++.++..++.+|...|+++
T Consensus 83 Lg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~ 162 (723)
T 4gyw_A 83 MGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWT 162 (723)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHH
Confidence 9999999999999999998862 34568899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHh
Q 007400 539 LVEKVRQLINE 549 (605)
Q Consensus 539 ~a~~~~~~~~~ 549 (605)
+|.+.++++.+
T Consensus 163 ~A~~~~~kal~ 173 (723)
T 4gyw_A 163 DYDERMKKLVS 173 (723)
T ss_dssp THHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999888754
No 65
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.46 E-value=3.9e-12 Score=126.06 Aligned_cols=276 Identities=11% Similarity=0.007 Sum_probs=175.2
Q ss_pred HHHHHHhccCChHHHHHHHHHHHHhCCCCCh----hHHHHHHHHHHhcCChHHHHHHHhhcCCCCcchHHHHHHHHHhcC
Q 007400 190 GILTICVKLEELKLTRQVHGQVLVTGFLSNV----VISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLG 265 (605)
Q Consensus 190 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~ 265 (605)
.+...+...|++++|...++++++.... +. .++..+..+|...|++++|...+++..
T Consensus 53 ~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al------------------ 113 (411)
T 4a1s_A 53 LEGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDL------------------ 113 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH------------------
T ss_pred HHHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH------------------
Confidence 3444555666666666666666665432 22 356667777777788877776665432
Q ss_pred ChHHHHHHHhhCCCC--ChhhHHHHHHHHHhCCChHHHHHHHHHHHHC----C-CCCChHHHHHHHHHHhcccc------
Q 007400 266 DMESASKLFNEMPEK--NPVSWTTLIAGYTRNGLGQKALELFTRMMIL----R-IRPNQHTFSSCLCACASIVS------ 332 (605)
Q Consensus 266 ~~~~A~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~----g-~~p~~~~~~~ll~~~~~~~~------ 332 (605)
++....... ...++..+...|...|++++|+..+++.... + ......++..+...+...|+
T Consensus 114 ------~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~ 187 (411)
T 4a1s_A 114 ------TLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRN 187 (411)
T ss_dssp ------HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred ------HHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCccccccc
Confidence 333333221 3446777788888888888888888876652 1 01112345555556666666
Q ss_pred -----------hHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCCCC-CcchHHHHHHHHHHcCCH
Q 007400 333 -----------LKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKE-NSMLWNTMISALTQHGYD 400 (605)
Q Consensus 333 -----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~ 400 (605)
++.|...+.+..+ ++......+ ...++..+...+...|++
T Consensus 188 ~~~~~~~a~~~~~~A~~~~~~al~----------------------------~~~~~~~~~~~~~~~~~la~~~~~~g~~ 239 (411)
T 4a1s_A 188 PGKFGDDVKEALTRAVEFYQENLK----------------------------LMRDLGDRGAQGRACGNLGNTYYLLGDF 239 (411)
T ss_dssp TTCCCHHHHHHHHHHHHHHHHHHH----------------------------HHHHHTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred chhhhhhhhHHHHHHHHHHHHHHH----------------------------HHHHcCCHHHHHHHHHHHHHHHHHcCCh
Confidence 4444444443322 111111111 223566677777788888
Q ss_pred HHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHhccCcHHHHHHHHHHchHhhCCCC----CHHHHHHHHHHHHhcCCh
Q 007400 401 EQAIRLFHDMVRSSVK-PD----KITLAVILNACTHSGLVQEGLTYFESMTHDLGIIP----NQEHHACLIELLAQAGCS 471 (605)
Q Consensus 401 ~~a~~~~~~m~~~~~~-p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p----~~~~~~~l~~~~~~~g~~ 471 (605)
++|...+++..+.... ++ ..++..+..++...|++++|...++++.....-.. ...++..+..+|...|++
T Consensus 240 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 319 (411)
T 4a1s_A 240 QAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEF 319 (411)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCH
Confidence 8888888777652100 11 13677788888888899988888887763221111 145778888889999999
Q ss_pred HHHHHHHHhCC----CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 007400 472 DQLMNQLEKMP----YEHD----SYLWNALHGVCRIHGNIDMGRKVVDQLIDQNP 518 (605)
Q Consensus 472 ~~A~~~~~~~~----~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 518 (605)
++|...+++.. ..++ ..++..++.++...|++++|...+++++++.+
T Consensus 320 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 374 (411)
T 4a1s_A 320 NTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAX 374 (411)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHh
Confidence 99998888752 0112 44677888999999999999999999999876
No 66
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.44 E-value=2.6e-12 Score=111.43 Aligned_cols=165 Identities=11% Similarity=0.043 Sum_probs=135.0
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhcC--CCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHH
Q 007400 351 NTIVMSSLIDMYSKCGCLNDGRQVFDLTD--NKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKP-DKITLAVILN 427 (605)
Q Consensus 351 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~ 427 (605)
+..+|..+...|...|++++|++.|++.. .+.+..+|..+...|...|++++|...+.+.... .| +...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL--DTTSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CchhHHHHHHHHH
Confidence 45677777888888888888888887643 2226678888888899999999999999988874 44 4567777888
Q ss_pred HHhccCcHHHHHHHHHHchHhhCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHH
Q 007400 428 ACTHSGLVQEGLTYFESMTHDLGIIPN-QEHHACLIELLAQAGCSDQLMNQLEKMP--YEHDSYLWNALHGVCRIHGNID 504 (605)
Q Consensus 428 ~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~ 504 (605)
.+...++++.|...+.++.. ..|+ ...+..+..+|.+.|++++|++.+++.. .+.+..+|..++.++...|+++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~---~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~ 158 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIA---LNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRD 158 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHcCCHHHHHHHHHHHHH---hCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHH
Confidence 88889999999999998872 3444 7788889999999999999999998862 3467889999999999999999
Q ss_pred HHHHHHHHHHhcCCCC
Q 007400 505 MGRKVVDQLIDQNPQS 520 (605)
Q Consensus 505 ~A~~~~~~~~~~~p~~ 520 (605)
+|+..|+++++.+|++
T Consensus 159 ~A~~~~~~al~~~p~~ 174 (184)
T 3vtx_A 159 EAVKYFKKALEKEEKK 174 (184)
T ss_dssp HHHHHHHHHHHTTHHH
T ss_pred HHHHHHHHHHhCCccC
Confidence 9999999999999964
No 67
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.43 E-value=7.2e-10 Score=114.42 Aligned_cols=216 Identities=8% Similarity=-0.046 Sum_probs=166.4
Q ss_pred HHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHH-HHHHhcCC--CCCcchHHHHHHHHHHcCCHHHHHHHHHHH
Q 007400 334 KHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGR-QVFDLTDN--KENSMLWNTMISALTQHGYDEQAIRLFHDM 410 (605)
Q Consensus 334 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~-~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 410 (605)
+.+..+|++++... +....+|...+..+...|+.++|. ++|+.... +.+...|...+......|++++|..+|+++
T Consensus 326 ~Rv~~~Ye~aL~~~-p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~ 404 (679)
T 4e6h_A 326 ARMTYVYMQAAQHV-CFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSC 404 (679)
T ss_dssp HHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 34567788888764 668889999999999999999996 99986542 225556777888889999999999999998
Q ss_pred HHCC---------CCCC------------HHHHHHHHHHHhccCcHHHHHHHHHHchHhhCCCCCHHHHHHHHHHHHhcC
Q 007400 411 VRSS---------VKPD------------KITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAG 469 (605)
Q Consensus 411 ~~~~---------~~p~------------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 469 (605)
+... -.|+ ...|...+....+.|+.+.|..+|.++.+.. ..+....|...+..-.+.|
T Consensus 405 l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~-~~~~~~lyi~~A~lE~~~~ 483 (679)
T 4e6h_A 405 IDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLK-KLVTPDIYLENAYIEYHIS 483 (679)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTG-GGSCTHHHHHHHHHHHTTT
T ss_pred HHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-CCCChHHHHHHHHHHHHhC
Confidence 8631 0142 2367777777778899999999999998330 1122445544444444554
Q ss_pred -ChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC---CCchHHHHHHHHHhcCCchHHHHH
Q 007400 470 -CSDQLMNQLEKMP--YEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQ---SSATHGLLSSIYSALGKGRLVEKV 543 (605)
Q Consensus 470 -~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~---~~~~~~~l~~~~~~~g~~~~a~~~ 543 (605)
+.+.|..+|+... .+.+...|..++......|+.+.|+.+|++++...|+ ....|..++..-...|+.+.+..+
T Consensus 484 ~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v 563 (679)
T 4e6h_A 484 KDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTL 563 (679)
T ss_dssp SCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHH
T ss_pred CCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 5899999998762 4467788888888888899999999999999999873 446788888889999999999999
Q ss_pred HHHHHhCC
Q 007400 544 RQLINERQ 551 (605)
Q Consensus 544 ~~~~~~~~ 551 (605)
.+++.+.-
T Consensus 564 ~~R~~~~~ 571 (679)
T 4e6h_A 564 EKRFFEKF 571 (679)
T ss_dssp HHHHHHHS
T ss_pred HHHHHHhC
Confidence 99997664
No 68
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.43 E-value=1.3e-11 Score=116.68 Aligned_cols=216 Identities=7% Similarity=0.035 Sum_probs=94.9
Q ss_pred HHHHHHHHHHHHCCCCCChHHHHHHHHHHhc-------ccch-------HHHHHHHHHHHHcCCCCChhHHHHHHHHHHh
Q 007400 299 QKALELFTRMMILRIRPNQHTFSSCLCACAS-------IVSL-------KHGKQVHGFLIRTNFRSNTIVMSSLIDMYSK 364 (605)
Q Consensus 299 ~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~-------~~~~-------~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 364 (605)
++|+..|++..... +.+...|..++..+.. .|++ ++|..+++++++.-.+.+...|..++..+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 45556666655531 2333444444444332 2443 4555555555542112333445555555555
Q ss_pred cCChHHHHHHHHhcCC-CCC-cc-hHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh-ccCcHHHHHH
Q 007400 365 CGCLNDGRQVFDLTDN-KEN-SM-LWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACT-HSGLVQEGLT 440 (605)
Q Consensus 365 ~g~~~~A~~~~~~~~~-~~~-~~-~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~-~~g~~~~a~~ 440 (605)
.|++++|.++|++... .|+ .. .|..++..+.+.|++++|..+|++.++.+ +++...|...+.... ..|+++.|..
T Consensus 112 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~~ 190 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFK 190 (308)
T ss_dssp TTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHHH
T ss_pred cCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHHHH
Confidence 5555555555554322 121 22 44455555555555555555555555421 112223322222211 1345555555
Q ss_pred HHHHchHhhCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHhCC----CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 007400 441 YFESMTHDLGIIP-NQEHHACLIELLAQAGCSDQLMNQLEKMP----YEH--DSYLWNALHGVCRIHGNIDMGRKVVDQL 513 (605)
Q Consensus 441 ~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 513 (605)
+|+++.+. .| +...+..++..+.+.|++++|..+|++.. .+| ....|..++..+...|+.+.|..+++++
T Consensus 191 ~~~~al~~---~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a 267 (308)
T 2ond_A 191 IFELGLKK---YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp HHHHHHHH---HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHh---CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 55554421 12 23444444444445555555555554431 122 2334444444444455555555555555
Q ss_pred HhcCCC
Q 007400 514 IDQNPQ 519 (605)
Q Consensus 514 ~~~~p~ 519 (605)
++..|+
T Consensus 268 ~~~~p~ 273 (308)
T 2ond_A 268 FTAFRE 273 (308)
T ss_dssp HHHTTT
T ss_pred HHHccc
Confidence 555444
No 69
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.43 E-value=2.7e-12 Score=125.85 Aligned_cols=224 Identities=9% Similarity=-0.053 Sum_probs=134.1
Q ss_pred HHHhcccchHHHHHHHHHHHHc----CCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhcC----CCCC-----cchHHHH
Q 007400 325 CACASIVSLKHGKQVHGFLIRT----NFRS-NTIVMSSLIDMYSKCGCLNDGRQVFDLTD----NKEN-----SMLWNTM 390 (605)
Q Consensus 325 ~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~-----~~~~~~l 390 (605)
..+...|++++|...++++.+. +-++ ...++..+...|...|+++.|...++... ..++ ..+++.+
T Consensus 111 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 190 (383)
T 3ulq_A 111 MYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLF 190 (383)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHH
Confidence 3344555555555555555442 1011 12345555666666666666666555322 1111 2356667
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCC-CCCH----HHHHHHHHHHhccCcHHHHHHHHHHchHh---hCCCCC-HHHHHHH
Q 007400 391 ISALTQHGYDEQAIRLFHDMVRSSV-KPDK----ITLAVILNACTHSGLVQEGLTYFESMTHD---LGIIPN-QEHHACL 461 (605)
Q Consensus 391 ~~~~~~~g~~~~a~~~~~~m~~~~~-~p~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~p~-~~~~~~l 461 (605)
...|...|++++|+..+++.++... .++. .++..+..+|...|++++|...+++...- .+..|. ..++..+
T Consensus 191 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 270 (383)
T 3ulq_A 191 ATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLI 270 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHH
Confidence 7777777777777777777664210 0111 36677777777788888888877777631 022133 5567777
Q ss_pred HHHHHhcCChHHHHHHHHhCC----C--CCC-HHHHHHHHHHHHhcCC---HHHHHHHHHHHHhcCCCCCchHHHHHHHH
Q 007400 462 IELLAQAGCSDQLMNQLEKMP----Y--EHD-SYLWNALHGVCRIHGN---IDMGRKVVDQLIDQNPQSSATHGLLSSIY 531 (605)
Q Consensus 462 ~~~~~~~g~~~~A~~~~~~~~----~--~~~-~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 531 (605)
+.+|.+.|++++|...+++.. . .+. ...+..+...+...|+ +++|+.++++. ...|.....+..++.+|
T Consensus 271 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y 349 (383)
T 3ulq_A 271 TQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAIDVAKYY 349 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHHHHHHHH
Confidence 778888888888877777641 0 111 2224556667777777 67777777665 33333455677788888
Q ss_pred HhcCCchHHHHHHHHHHh
Q 007400 532 SALGKGRLVEKVRQLINE 549 (605)
Q Consensus 532 ~~~g~~~~a~~~~~~~~~ 549 (605)
...|++++|...+++..+
T Consensus 350 ~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 350 HERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHH
Confidence 888888888888877754
No 70
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.42 E-value=3.2e-11 Score=114.08 Aligned_cols=214 Identities=8% Similarity=0.007 Sum_probs=170.9
Q ss_pred HHHHHHHHHHHHcCCCCChhHHHHHHHHHHh-------cCCh-------HHHHHHHHhcCC--CC-CcchHHHHHHHHHH
Q 007400 334 KHGKQVHGFLIRTNFRSNTIVMSSLIDMYSK-------CGCL-------NDGRQVFDLTDN--KE-NSMLWNTMISALTQ 396 (605)
Q Consensus 334 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~g~~-------~~A~~~~~~~~~--~~-~~~~~~~l~~~~~~ 396 (605)
+.|..+|+++++.. +.+...|..++..+.. .|++ ++|..+|++... .| +...|..++..+..
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 67788888888865 6677888888877763 5886 899999987543 34 45689999999999
Q ss_pred cCCHHHHHHHHHHHHHCCCCCC-HH-HHHHHHHHHhccCcHHHHHHHHHHchHhhCCCCC-HHHHHHHHHHHH-hcCChH
Q 007400 397 HGYDEQAIRLFHDMVRSSVKPD-KI-TLAVILNACTHSGLVQEGLTYFESMTHDLGIIPN-QEHHACLIELLA-QAGCSD 472 (605)
Q Consensus 397 ~g~~~~a~~~~~~m~~~~~~p~-~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~-~~g~~~ 472 (605)
.|++++|..+|+++++ +.|+ .. .|..++..+.+.|++++|..+|+++. ...|+ ...|...+.... ..|+++
T Consensus 112 ~~~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~---~~~p~~~~~~~~~a~~~~~~~~~~~ 186 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAR---EDARTRHHVYVTAALMEYYCSKDKS 186 (308)
T ss_dssp TTCHHHHHHHHHHHHT--SSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHH---TSTTCCTHHHHHHHHHHHHTSCCHH
T ss_pred cCCHHHHHHHHHHHHh--ccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHH---hcCCCCHHHHHHHHHHHHHHcCCHH
Confidence 9999999999999998 5664 43 78889999999999999999999998 33343 555554444322 369999
Q ss_pred HHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc---CCC-CCchHHHHHHHHHhcCCchHHHHHHHH
Q 007400 473 QLMNQLEKMP--YEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQ---NPQ-SSATHGLLSSIYSALGKGRLVEKVRQL 546 (605)
Q Consensus 473 ~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~p~-~~~~~~~l~~~~~~~g~~~~a~~~~~~ 546 (605)
+|..+|++.. .+.+...|..++..+...|++++|+.+|+++++. .|+ +...|..++..+.+.|+.++|..++++
T Consensus 187 ~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~ 266 (308)
T 2ond_A 187 VAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKR 266 (308)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 9999998862 3457888999999999999999999999999996 443 566888899999999999999999999
Q ss_pred HHhCCCc
Q 007400 547 INERQFK 553 (605)
Q Consensus 547 ~~~~~~~ 553 (605)
+.+....
T Consensus 267 a~~~~p~ 273 (308)
T 2ond_A 267 RFTAFRE 273 (308)
T ss_dssp HHHHTTT
T ss_pred HHHHccc
Confidence 8776543
No 71
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.40 E-value=5.7e-12 Score=113.55 Aligned_cols=187 Identities=8% Similarity=-0.099 Sum_probs=83.4
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhcC--CC-CCcchHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHH
Q 007400 352 TIVMSSLIDMYSKCGCLNDGRQVFDLTD--NK-ENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPD-KITLAVILN 427 (605)
Q Consensus 352 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~l~~ 427 (605)
+..+......+...|++++|...|+... .+ ++...+..+..++...|++++|+..+++..+ ..|+ ...+..+..
T Consensus 7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~~ 84 (228)
T 4i17_A 7 PNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIK--KNYNLANAYIGKSA 84 (228)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHH--hCcchHHHHHHHHH
Confidence 3444444555555555555555554322 11 2344444444455555555555555555554 2332 234444555
Q ss_pred HHhccCcHHHHHHHHHHchHhhCCCCC-H-------HHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC---HHHHHHHHH
Q 007400 428 ACTHSGLVQEGLTYFESMTHDLGIIPN-Q-------EHHACLIELLAQAGCSDQLMNQLEKM-PYEHD---SYLWNALHG 495 (605)
Q Consensus 428 ~~~~~g~~~~a~~~~~~~~~~~~~~p~-~-------~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~---~~~~~~l~~ 495 (605)
++...|++++|...+++..+. .|+ . ..+..+...+...|++++|++.+++. ...|+ ...|..++.
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 161 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKA---VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGV 161 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHH---CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHH
Confidence 555555555555555554421 222 2 23444444444444444444444443 12222 233333333
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 007400 496 VCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINER 550 (605)
Q Consensus 496 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 550 (605)
++.. .+...++++..+.+.+...+. .......|.+++|+..+++..+.
T Consensus 162 ~~~~-----~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~~~~A~~~~~~a~~l 209 (228)
T 4i17_A 162 LFYN-----NGADVLRKATPLASSNKEKYA--SEKAKADAAFKKAVDYLGEAVTL 209 (228)
T ss_dssp HHHH-----HHHHHHHHHGGGTTTCHHHHH--HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHH-----HHHHHHHHHHhcccCCHHHHH--HHHHHHHHHHHHHHHHHHHHhhc
Confidence 3322 222333444444332322221 11222334448999999988764
No 72
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.40 E-value=6.4e-12 Score=120.54 Aligned_cols=275 Identities=10% Similarity=-0.001 Sum_probs=154.8
Q ss_pred HHHHhccCChHHHHHHHHHHHHhCCCCC---hhHHHHHHHHHHhcCChHHHHHHHhhcCCCCcchHHHHHHHHHhcCChH
Q 007400 192 LTICVKLEELKLTRQVHGQVLVTGFLSN---VVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDME 268 (605)
Q Consensus 192 l~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 268 (605)
...+...|++++|...++++.+..+... ..++..+...|...|++++|.+.+++..
T Consensus 12 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al--------------------- 70 (338)
T 3ro2_A 12 GERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDL--------------------- 70 (338)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH---------------------
T ss_pred HHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH---------------------
Confidence 3444555666666666666555532211 2455566667777777777776655432
Q ss_pred HHHHHHhhCCCC--ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCC-CCC----hHHHHHHHHHHhcccc---------
Q 007400 269 SASKLFNEMPEK--NPVSWTTLIAGYTRNGLGQKALELFTRMMILRI-RPN----QHTFSSCLCACASIVS--------- 332 (605)
Q Consensus 269 ~A~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~-~p~----~~~~~~ll~~~~~~~~--------- 332 (605)
.+......+ ...++..+...+...|++++|+..+++..+... .++ ..++..+...+...|+
T Consensus 71 ---~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 147 (338)
T 3ro2_A 71 ---TLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQD 147 (338)
T ss_dssp ---HHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC-
T ss_pred ---HHhhcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhh
Confidence 222222111 234566677777777888888777777654210 111 2245555555666666
Q ss_pred -----------hHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCCCC-CcchHHHHHHHHHHcCCH
Q 007400 333 -----------LKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKE-NSMLWNTMISALTQHGYD 400 (605)
Q Consensus 333 -----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~ 400 (605)
++.|...+++..+. +......+ ...++..+...+...|++
T Consensus 148 ~~~~~~~a~~~~~~A~~~~~~a~~~----------------------------~~~~~~~~~~~~~~~~l~~~~~~~~~~ 199 (338)
T 3ro2_A 148 TGEFPEDVRNALQAAVDLYEENLSL----------------------------VTALGDRAAQGRAFGNLGNTHYLLGNF 199 (338)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHHHH----------------------------HHHHTCHHHHHHHHHHHHHHHHHHTCH
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHH----------------------------HHhcCCHHHHHHHHHHHHHHHHHhCCH
Confidence 55555554443321 11111110 123455555566666666
Q ss_pred HHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHhccCcHHHHHHHHHHchHhhCCCCC----HHHHHHHHHHHHhcCCh
Q 007400 401 EQAIRLFHDMVRSSV-KPD----KITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPN----QEHHACLIELLAQAGCS 471 (605)
Q Consensus 401 ~~a~~~~~~m~~~~~-~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~ 471 (605)
++|...+++..+... .++ ..++..+...+...|++++|...+++......-.++ ..++..+...|...|++
T Consensus 200 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 279 (338)
T 3ro2_A 200 RDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDY 279 (338)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCH
Confidence 666666666553210 011 125666666777777777777777766522111111 45667777778888888
Q ss_pred HHHHHHHHhCC----CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 007400 472 DQLMNQLEKMP----YEHD----SYLWNALHGVCRIHGNIDMGRKVVDQLIDQNP 518 (605)
Q Consensus 472 ~~A~~~~~~~~----~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 518 (605)
++|...+++.. ...+ ..++..++..+...|++++|...++++++..+
T Consensus 280 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 334 (338)
T 3ro2_A 280 EKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISR 334 (338)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Confidence 88877776641 0111 44677788899999999999999999998865
No 73
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.39 E-value=6.3e-13 Score=126.16 Aligned_cols=237 Identities=13% Similarity=0.091 Sum_probs=120.6
Q ss_pred ChhhHHHHHHHHHhCCChHHHHHHHHHHHHC-------CCCCChHHHHHHHHHHhcccchHHHHHHHHHHHHc------C
Q 007400 281 NPVSWTTLIAGYTRNGLGQKALELFTRMMIL-------RIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRT------N 347 (605)
Q Consensus 281 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~-------g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~ 347 (605)
+..++..+...+...|++++|+.+++++.+. ..+.....+..+...+...|++++|...++++.+. +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 3456778888888888888888888887762 12223345556666666677777777766666543 1
Q ss_pred C-CCChhHHHHHHHHHHhcCChHHHHHHHHhcCCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHC------CCCCC-H
Q 007400 348 F-RSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRS------SVKPD-K 419 (605)
Q Consensus 348 ~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~------~~~p~-~ 419 (605)
. +....++..+...| ...|++++|...++++.+. +-.|+ .
T Consensus 106 ~~~~~~~~~~~l~~~~--------------------------------~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 153 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLY--------------------------------GKRGKYKEAEPLCKRALEIREKVLGKDHPDVA 153 (311)
T ss_dssp TCHHHHHHHHHHHHHH--------------------------------HTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHH
T ss_pred CChHHHHHHHHHHHHH--------------------------------HHcCcHHHHHHHHHHHHHHHHHhcCCCChHHH
Confidence 1 11223344444444 4445555554444444432 11121 2
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHchHhh-----CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHhCC----------C
Q 007400 420 ITLAVILNACTHSGLVQEGLTYFESMTHDL-----GIIPN-QEHHACLIELLAQAGCSDQLMNQLEKMP----------Y 483 (605)
Q Consensus 420 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-----~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~----------~ 483 (605)
.++..+...+...|++++|..+++++.... +..|. ..++..+..+|...|++++|.+.++++. .
T Consensus 154 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 233 (311)
T 3nf1_A 154 KQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSV 233 (311)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC
Confidence 344455555555555555555555554210 11222 3345555555555555555555554431 0
Q ss_pred CCC-------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 007400 484 EHD-------SYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINE 549 (605)
Q Consensus 484 ~~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 549 (605)
.+. ...+..+...+...+.+.++...++++....|....++..++.+|.+.|++++|..++++..+
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 234 DDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp ----CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 000 111222223334445566666667777766776777777777777777777777777776654
No 74
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.39 E-value=7e-12 Score=126.02 Aligned_cols=179 Identities=12% Similarity=-0.046 Sum_probs=157.5
Q ss_pred hHHHHHHHHhcCCC--CCcchHHHHHHHHHHcCCH-HHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHH
Q 007400 368 LNDGRQVFDLTDNK--ENSMLWNTMISALTQHGYD-EQAIRLFHDMVRSSVKPD-KITLAVILNACTHSGLVQEGLTYFE 443 (605)
Q Consensus 368 ~~~A~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~-~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~ 443 (605)
++++...++..... .+...+..+...+...|++ ++|+..|++.++ ..|+ ...+..+..+|...|++++|...|+
T Consensus 84 ~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVK--LEPELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 55666666654322 3667888999999999999 999999999998 4564 6799999999999999999999999
Q ss_pred HchHhhCCCCCHHHHHHHHHHHHhc---------CChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhc--------CCHH
Q 007400 444 SMTHDLGIIPNQEHHACLIELLAQA---------GCSDQLMNQLEKMP--YEHDSYLWNALHGVCRIH--------GNID 504 (605)
Q Consensus 444 ~~~~~~~~~p~~~~~~~l~~~~~~~---------g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~--------g~~~ 504 (605)
++. ...|+...+..+..+|... |++++|++.+++.. .+.+...|..++.+|... |+++
T Consensus 162 ~al---~~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 162 GAL---THCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHH---TTCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHH---hhCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHH
Confidence 998 5678888999999999999 99999999999862 345788999999999998 9999
Q ss_pred HHHHHHHHHHhcCC---CCCchHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 007400 505 MGRKVVDQLIDQNP---QSSATHGLLSSIYSALGKGRLVEKVRQLINERQ 551 (605)
Q Consensus 505 ~A~~~~~~~~~~~p---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 551 (605)
+|+..|+++++++| +++..+..++.+|...|++++|...|++..+..
T Consensus 239 ~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~ 288 (474)
T 4abn_A 239 QALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD 288 (474)
T ss_dssp HHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 99999999999999 999999999999999999999999999987753
No 75
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.38 E-value=2.4e-10 Score=111.50 Aligned_cols=264 Identities=11% Similarity=0.015 Sum_probs=177.1
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHCCCCCChH----HHHHHHHHHhcccchHHHHHHHHHHHHcCCC-CC----hhHHH
Q 007400 286 TTLIAGYTRNGLGQKALELFTRMMILRIRPNQH----TFSSCLCACASIVSLKHGKQVHGFLIRTNFR-SN----TIVMS 356 (605)
Q Consensus 286 ~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~ 356 (605)
......+...|++++|...+++.....-..+.. .+..+...+...|+++.|...+.+..+.... .+ ..++.
T Consensus 18 ~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 97 (373)
T 1hz4_A 18 ALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLI 97 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 344455667888888888888877643222221 3445556677788888888888777653211 11 12345
Q ss_pred HHHHHHHhcCChHHHHHHHHhcCC-------C--C-CcchHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC--C--CHHHH
Q 007400 357 SLIDMYSKCGCLNDGRQVFDLTDN-------K--E-NSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVK--P--DKITL 422 (605)
Q Consensus 357 ~l~~~~~~~g~~~~A~~~~~~~~~-------~--~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~--p--~~~~~ 422 (605)
.+...+...|++++|...++.... . | ....+..+...+...|++++|...+++....... + ...++
T Consensus 98 ~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 177 (373)
T 1hz4_A 98 QQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCL 177 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHH
Confidence 677778888888888888875321 1 1 1234566777888899999999999888763211 1 12467
Q ss_pred HHHHHHHhccCcHHHHHHHHHHchHhhCCCCC-HHHHH----HHHHHHHhcCChHHHHHHHHhCC-CCCC-----HHHHH
Q 007400 423 AVILNACTHSGLVQEGLTYFESMTHDLGIIPN-QEHHA----CLIELLAQAGCSDQLMNQLEKMP-YEHD-----SYLWN 491 (605)
Q Consensus 423 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~----~l~~~~~~~g~~~~A~~~~~~~~-~~~~-----~~~~~ 491 (605)
..+...+...|++++|...+++.......... ..... ..+..+...|++++|...+++.. ..+. ...+.
T Consensus 178 ~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 257 (373)
T 1hz4_A 178 AMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWR 257 (373)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHH
Confidence 77888888899999999999887632111111 11111 23345778999999999998863 1111 23456
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCC------CchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 007400 492 ALHGVCRIHGNIDMGRKVVDQLIDQNPQS------SATHGLLSSIYSALGKGRLVEKVRQLINE 549 (605)
Q Consensus 492 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 549 (605)
.++.++...|++++|...++++++..+.. ...+..++.++...|++++|...+++..+
T Consensus 258 ~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 258 NIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 77788888999999999999988763321 13667788999999999999998888754
No 76
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.38 E-value=1.4e-11 Score=106.78 Aligned_cols=161 Identities=16% Similarity=0.081 Sum_probs=105.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHchHhhCCCCCHHHHHHHHHHHH
Q 007400 387 WNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLA 466 (605)
Q Consensus 387 ~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~ 466 (605)
|..+...+...|++++|...++++.+.. +.+..++..+..++...|++++|...++++... .+.+...+..++..+.
T Consensus 11 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 11 YRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLAD--APDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHH
Confidence 4444455555555555555555554421 123445555555566666666666666665521 1123455566666666
Q ss_pred hcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHH
Q 007400 467 QAGCSDQLMNQLEKMP--YEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVR 544 (605)
Q Consensus 467 ~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~ 544 (605)
..|++++|.+.++++. .+.+...+..++..+...|++++|...++++++..|+++..+..++.++...|++++|...+
T Consensus 88 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 167 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHF 167 (186)
T ss_dssp HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHH
Confidence 6666666666666541 23466777778888888888888888888888888888888888888888888888888888
Q ss_pred HHHHhC
Q 007400 545 QLINER 550 (605)
Q Consensus 545 ~~~~~~ 550 (605)
+++.+.
T Consensus 168 ~~~~~~ 173 (186)
T 3as5_A 168 KKANEL 173 (186)
T ss_dssp HHHHHH
T ss_pred HHHHHc
Confidence 887654
No 77
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.37 E-value=5.4e-11 Score=116.53 Aligned_cols=204 Identities=9% Similarity=-0.017 Sum_probs=133.3
Q ss_pred hhHHHHHHHHHhCCChHHHHHHHHHHHHCCC-CCChHHHHHHHHHHhcccchHHHHHHHHHHHHcCCCCChhHHHHHHHH
Q 007400 283 VSWTTLIAGYTRNGLGQKALELFTRMMILRI-RPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDM 361 (605)
Q Consensus 283 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 361 (605)
.++..+...|...|++++|+..+++..+.-- .++.. +....+++.+..+
T Consensus 144 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~------------------------------~~~~~~~~~lg~~ 193 (383)
T 3ulq_A 144 EFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYN------------------------------IRLLQCHSLFATN 193 (383)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTH------------------------------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccch------------------------------HHHHHHHHHHHHH
Confidence 4566777777777888777777777654200 01100 0011233344444
Q ss_pred HHhcCChHHHHHHHHhcCC----CCC----cchHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHH
Q 007400 362 YSKCGCLNDGRQVFDLTDN----KEN----SMLWNTMISALTQHGYDEQAIRLFHDMVRS----SVKPD-KITLAVILNA 428 (605)
Q Consensus 362 ~~~~g~~~~A~~~~~~~~~----~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~----~~~p~-~~~~~~l~~~ 428 (605)
|...|++++|...|+.... .++ ..++..+...|...|++++|+..+++..+. +..|+ ..++..+..+
T Consensus 194 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~ 273 (383)
T 3ulq_A 194 FLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQI 273 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHH
Confidence 4445555555444443220 011 235677778888888888888888887762 22233 4578888888
Q ss_pred HhccCcHHHHHHHHHHchHhhCC--CCC-HHHHHHHHHHHHhcCC---hHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcC
Q 007400 429 CTHSGLVQEGLTYFESMTHDLGI--IPN-QEHHACLIELLAQAGC---SDQLMNQLEKMPYEHD-SYLWNALHGVCRIHG 501 (605)
Q Consensus 429 ~~~~g~~~~a~~~~~~~~~~~~~--~p~-~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~-~~~~~~l~~~~~~~g 501 (605)
+...|++++|...+++...-..- .|. ...+..+...|...|+ +++|+.++++....++ ...+..++..|...|
T Consensus 274 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y~~~g 353 (383)
T 3ulq_A 274 HYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAIDVAKYYHERK 353 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHCC
Confidence 99999999999998887632111 122 3345678888888998 8899999998863333 346677899999999
Q ss_pred CHHHHHHHHHHHHhc
Q 007400 502 NIDMGRKVVDQLIDQ 516 (605)
Q Consensus 502 ~~~~A~~~~~~~~~~ 516 (605)
++++|...++++++.
T Consensus 354 ~~~~A~~~~~~al~~ 368 (383)
T 3ulq_A 354 NFQKASAYFLKVEQV 368 (383)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH
Confidence 999999999999886
No 78
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.35 E-value=9.8e-13 Score=124.85 Aligned_cols=238 Identities=11% Similarity=0.091 Sum_probs=151.5
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHhhCCC--------C---ChhhHHHHHHHHHhCCChHHHHHHHHHHHHC------CC
Q 007400 251 VLTWTTMVSGYAKLGDMESASKLFNEMPE--------K---NPVSWTTLIAGYTRNGLGQKALELFTRMMIL------RI 313 (605)
Q Consensus 251 ~~~~~~li~~~~~~~~~~~A~~~~~~~~~--------~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~------g~ 313 (605)
..++..+...+...|++++|..+++++.+ . ...++..+...+...|++++|+..+++.... +-
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 106 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD 106 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 45688888999999999999999998764 2 3457888999999999999999999998763 22
Q ss_pred -CCChHHHHHHHHHHhcccchHHHHHHHHHHHHcC------CCCChhHHHHHHHHHHhcCChHHHHHHHHhcCCCCCcch
Q 007400 314 -RPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTN------FRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSML 386 (605)
Q Consensus 314 -~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 386 (605)
+.....+..+...+...|++++|...+.++.+.. ..+. ...+
T Consensus 107 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~-------------------------------~~~~ 155 (311)
T 3nf1_A 107 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPD-------------------------------VAKQ 155 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHH-------------------------------HHHH
T ss_pred ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChH-------------------------------HHHH
Confidence 2234577888889999999999999998887531 1111 1233
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHC------CCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHchHhh------CCCC
Q 007400 387 WNTMISALTQHGYDEQAIRLFHDMVRS------SVKPD-KITLAVILNACTHSGLVQEGLTYFESMTHDL------GIIP 453 (605)
Q Consensus 387 ~~~l~~~~~~~g~~~~a~~~~~~m~~~------~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~------~~~p 453 (605)
+..+...+...|++++|+.+++++.+. +..|+ ..++..+..++...|++++|..+++++.... ...+
T Consensus 156 ~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 235 (311)
T 3nf1_A 156 LNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDD 235 (311)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCc
Confidence 444555555566666666666555542 11222 2356666666667777777777776665210 1111
Q ss_pred C-------HHHHHHHHHHHHhcCChHHHHHHHHhCC-C-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 007400 454 N-------QEHHACLIELLAQAGCSDQLMNQLEKMP-Y-EHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQ 519 (605)
Q Consensus 454 ~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 519 (605)
. ...+..+...+...+.+.++...+++.. . +.+..++..++.+|...|++++|...|++++++.|+
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 236 ENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp --CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred chHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 1 1122223333444555555666666553 1 234567888999999999999999999999998774
No 79
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.34 E-value=6.1e-11 Score=106.74 Aligned_cols=206 Identities=6% Similarity=0.053 Sum_probs=163.7
Q ss_pred CChHHHHHHHHHHhcccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCC-CC-CcchHHHHHH
Q 007400 315 PNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDN-KE-NSMLWNTMIS 392 (605)
Q Consensus 315 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~ 392 (605)
.|...+......+...|++++|...|+.+++...+++...+..+..++...|++++|+..|+.... .| +...|..+..
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 84 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSA 84 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHH
Confidence 456788888899999999999999999999987447777888899999999999999999997552 23 5678899999
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCC-H-------HHHHHHHHHHhccCcHHHHHHHHHHchHhhCCCCC---HHHHHHH
Q 007400 393 ALTQHGYDEQAIRLFHDMVRSSVKPD-K-------ITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPN---QEHHACL 461 (605)
Q Consensus 393 ~~~~~g~~~~a~~~~~~m~~~~~~p~-~-------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~---~~~~~~l 461 (605)
.+...|++++|+..+++.++ ..|+ . ..+..+...+...|++++|+..|+++. ...|+ ...+..+
T Consensus 85 ~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al---~~~p~~~~~~~~~~l 159 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIK--AVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHAT---DVTSKKWKTDALYSL 159 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT---TSSCHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHH--HCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHH---hcCCCcccHHHHHHH
Confidence 99999999999999999998 4554 4 457788888999999999999999998 55676 5678888
Q ss_pred HHHHHhcCCh--HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 007400 462 IELLAQAGCS--DQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYS 532 (605)
Q Consensus 462 ~~~~~~~g~~--~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 532 (605)
..+|...|+. +++..+ . ..+...+... .....+.+++|+..+++++++.|++..+...+..+..
T Consensus 160 ~~~~~~~~~~~~~~a~~~----~-~~~~~~~~~~--~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~~ 225 (228)
T 4i17_A 160 GVLFYNNGADVLRKATPL----A-SSNKEKYASE--KAKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVKA 225 (228)
T ss_dssp HHHHHHHHHHHHHHHGGG----T-TTCHHHHHHH--HHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhc----c-cCCHHHHHHH--HHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHH
Confidence 8888776653 232222 1 2334444333 2345577999999999999999999888887776643
No 80
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.30 E-value=2.6e-10 Score=111.33 Aligned_cols=228 Identities=8% Similarity=-0.020 Sum_probs=107.5
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHCCC-CCC----hHHHHHHHHHHhcccchHHHHHHHHHHHHcCCC-C-----ChhHH
Q 007400 287 TLIAGYTRNGLGQKALELFTRMMILRI-RPN----QHTFSSCLCACASIVSLKHGKQVHGFLIRTNFR-S-----NTIVM 355 (605)
Q Consensus 287 ~l~~~~~~~g~~~~a~~~~~~m~~~g~-~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~-----~~~~~ 355 (605)
.....+...|++++|+..|++....-. .++ ..++..+...+...|+++.|...+.++.+.... + ...++
T Consensus 106 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 185 (378)
T 3q15_A 106 FRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSL 185 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHH
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHH
Confidence 344556677777777777777665311 122 234555556666666666666666665542100 0 12334
Q ss_pred HHHHHHHHhcCChHHHHHHHHhcCC----CCC----cchHHHHHHHHHHcCCHHHHHHHHHHHHH-----CCCCCCHHHH
Q 007400 356 SSLIDMYSKCGCLNDGRQVFDLTDN----KEN----SMLWNTMISALTQHGYDEQAIRLFHDMVR-----SSVKPDKITL 422 (605)
Q Consensus 356 ~~l~~~~~~~g~~~~A~~~~~~~~~----~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~-----~~~~p~~~~~ 422 (605)
+.+..+|...|++++|.+.|+.... .++ ..++..+...|...|++++|+..+++..+ .. +....++
T Consensus 186 ~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~ 264 (378)
T 3q15_A 186 FVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLPKVL 264 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHHHHH
Confidence 4455555555555555555543221 011 12344455555555555555555555544 21 1113345
Q ss_pred HHHHHHHhccCcHHHHHHHHHHchHhhCC--CCC-HHHHHHHHHHHHhcCC---hHHHHHHHHhCCCCCC-HHHHHHHHH
Q 007400 423 AVILNACTHSGLVQEGLTYFESMTHDLGI--IPN-QEHHACLIELLAQAGC---SDQLMNQLEKMPYEHD-SYLWNALHG 495 (605)
Q Consensus 423 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~p~-~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~-~~~~~~l~~ 495 (605)
..+..++.+.|++++|...+++...-..- .|. ...+..+...+...|+ +.+|+..+++....++ ...+..++.
T Consensus 265 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~ 344 (378)
T 3q15_A 265 FGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAAA 344 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence 55555555555555555555555422111 111 2233444444444444 4455555544331111 123334444
Q ss_pred HHHhcCCHHHHHHHHHHHHh
Q 007400 496 VCRIHGNIDMGRKVVDQLID 515 (605)
Q Consensus 496 ~~~~~g~~~~A~~~~~~~~~ 515 (605)
.|...|++++|...|+++++
T Consensus 345 ~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 345 VFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHH
Confidence 45555555555555555443
No 81
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.28 E-value=1.5e-10 Score=106.67 Aligned_cols=206 Identities=8% Similarity=-0.038 Sum_probs=128.2
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhcCCC-CC----cchHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCC-HHHHH
Q 007400 351 NTIVMSSLIDMYSKCGCLNDGRQVFDLTDNK-EN----SMLWNTMISALTQHGYDEQAIRLFHDMVRSSV-KPD-KITLA 423 (605)
Q Consensus 351 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~-~p~-~~~~~ 423 (605)
+...+-.+...+.+.|++++|...|+.+... |+ ...+..+..++...|++++|+..|++.++... .|. ...+.
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 93 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEY 93 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHH
Confidence 3445555566666666666666666654421 22 34555566666666666666666666666311 111 23455
Q ss_pred HHHHHHhc--------cCcHHHHHHHHHHchHhhCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHH
Q 007400 424 VILNACTH--------SGLVQEGLTYFESMTHDLGIIPN-QEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALH 494 (605)
Q Consensus 424 ~l~~~~~~--------~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~ 494 (605)
.+..++.. .|++++|...|+++... .|+ ......+.......+.. ...+..++
T Consensus 94 ~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~---~p~~~~~~~a~~~~~~~~~~~---------------~~~~~~la 155 (261)
T 3qky_A 94 ERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR---YPNHELVDDATQKIRELRAKL---------------ARKQYEAA 155 (261)
T ss_dssp HHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH---CTTCTTHHHHHHHHHHHHHHH---------------HHHHHHHH
T ss_pred HHHHHHHHhcccccccchhHHHHHHHHHHHHHH---CcCchhHHHHHHHHHHHHHHH---------------HHHHHHHH
Confidence 55556655 66666666666666632 232 11111111110000000 11246678
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCC---chHHHHHHHHHhc----------CCchHHHHHHHHHHhCCCcCCCceeEE
Q 007400 495 GVCRIHGNIDMGRKVVDQLIDQNPQSS---ATHGLLSSIYSAL----------GKGRLVEKVRQLINERQFKKEQAISWI 561 (605)
Q Consensus 495 ~~~~~~g~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~----------g~~~~a~~~~~~~~~~~~~~~~~~s~~ 561 (605)
..+...|++++|+..|+++++..|+++ ..+..++.+|... |++++|...++++.+...
T Consensus 156 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p--------- 226 (261)
T 3qky_A 156 RLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFP--------- 226 (261)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCT---------
T ss_pred HHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCC---------
Confidence 899999999999999999999999754 4788999999977 899999999999876432
Q ss_pred EECCEEEEEEeCCCCCcchHHHHHHHHHHHHHHhhC
Q 007400 562 EIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQMGED 597 (605)
Q Consensus 562 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 597 (605)
.+|...+....+.++...++..
T Consensus 227 --------------~~~~~~~a~~~l~~~~~~~~~~ 248 (261)
T 3qky_A 227 --------------DSPLLRTAEELYTRARQRLTEL 248 (261)
T ss_dssp --------------TCTHHHHHHHHHHHHHHHHHHH
T ss_pred --------------CChHHHHHHHHHHHHHHHHHHh
Confidence 3566677777777777766543
No 82
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.28 E-value=2.5e-10 Score=98.76 Aligned_cols=167 Identities=9% Similarity=0.007 Sum_probs=141.9
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhcCCC--CCcchHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHH
Q 007400 353 IVMSSLIDMYSKCGCLNDGRQVFDLTDNK--ENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKP-DKITLAVILNAC 429 (605)
Q Consensus 353 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~ 429 (605)
..+..+...+...|++++|...|+.+... .+...+..+...+...|++++|...++++.+. .| +...+..+...+
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLAD--APDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHH
Confidence 45667788899999999999999987643 36677888999999999999999999999884 44 567888899999
Q ss_pred hccCcHHHHHHHHHHchHhhCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHH
Q 007400 430 THSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMP--YEHDSYLWNALHGVCRIHGNIDMGR 507 (605)
Q Consensus 430 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~ 507 (605)
...|++++|...++++... .+.+...+..++..+...|++++|.+.++++. .+.+..++..++..+...|++++|.
T Consensus 87 ~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 164 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEA--NPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEAL 164 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhc--CcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHH
Confidence 9999999999999999833 23357788899999999999999999998862 3456888999999999999999999
Q ss_pred HHHHHHHhcCCCCCch
Q 007400 508 KVVDQLIDQNPQSSAT 523 (605)
Q Consensus 508 ~~~~~~~~~~p~~~~~ 523 (605)
..++++++..|++...
T Consensus 165 ~~~~~~~~~~~~~~~~ 180 (186)
T 3as5_A 165 PHFKKANELDEGASVE 180 (186)
T ss_dssp HHHHHHHHHHHCCCGG
T ss_pred HHHHHHHHcCCCchhh
Confidence 9999999998876543
No 83
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.22 E-value=1.1e-08 Score=99.51 Aligned_cols=267 Identities=10% Similarity=-0.061 Sum_probs=151.8
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCChh----hHHHHHHHHhccCChHHHHHHHHHHHHhCCCC-C----hhHHHHH
Q 007400 156 MIIGYAKSGAVEEGLKFYKVLRRFSISCNEF----SFAGILTICVKLEELKLTRQVHGQVLVTGFLS-N----VVISSSI 226 (605)
Q Consensus 156 li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~----~~~~~~l 226 (605)
....+...|++++|...+++........+.. ++..+...+...|+++.|...+++........ + ..++..+
T Consensus 20 ~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 99 (373)
T 1hz4_A 20 RAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQ 99 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 3445667788888888888876643222221 34555566677788888888887776542211 1 2234556
Q ss_pred HHHHHhcCChHHHHHHHhhcCCCCcchHHHHHHHHHhcCChHHHHHHHhhCCCC----ChhhHHHHHHHHHhCCChHHHH
Q 007400 227 VDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEK----NPVSWTTLIAGYTRNGLGQKAL 302 (605)
Q Consensus 227 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~a~ 302 (605)
...+...|++++|...+++.. ++......+ ....+..+...+...|++++|.
T Consensus 100 a~~~~~~G~~~~A~~~~~~al------------------------~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 155 (373)
T 1hz4_A 100 SEILFAQGFLQTAWETQEKAF------------------------QLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAE 155 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHH------------------------HHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHH------------------------HHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHH
Confidence 677777888888876665432 333333322 2235666778888889999999
Q ss_pred HHHHHHHHCCCC--C--ChHHHHHHHHHHhcccchHHHHHHHHHHHHcCCCCCh-hHHH-----HHHHHHHhcCChHHHH
Q 007400 303 ELFTRMMILRIR--P--NQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNT-IVMS-----SLIDMYSKCGCLNDGR 372 (605)
Q Consensus 303 ~~~~~m~~~g~~--p--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~-----~l~~~~~~~g~~~~A~ 372 (605)
..+++....... + ...++..+...+...|++++|...+++.......++. ..+. ..+..+...|++++|.
T Consensus 156 ~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~ 235 (373)
T 1hz4_A 156 ASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAA 235 (373)
T ss_dssp HHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHH
Confidence 998887753211 1 1235566667777788888888888777653211111 1111 2233456677777777
Q ss_pred HHHHhcCCC-CC-----cchHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCCCH-HHHHHHHHHHhccCcHHHHHHH
Q 007400 373 QVFDLTDNK-EN-----SMLWNTMISALTQHGYDEQAIRLFHDMVRS----SVKPDK-ITLAVILNACTHSGLVQEGLTY 441 (605)
Q Consensus 373 ~~~~~~~~~-~~-----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~----~~~p~~-~~~~~l~~~~~~~g~~~~a~~~ 441 (605)
..++..... +. ...+..+...+...|++++|...+++.... |..++. ..+..+..++...|+.++|...
T Consensus 236 ~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 315 (373)
T 1hz4_A 236 NWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRV 315 (373)
T ss_dssp HHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 777665432 11 112445555666666666666666655431 111111 1333444445555555555555
Q ss_pred HHHch
Q 007400 442 FESMT 446 (605)
Q Consensus 442 ~~~~~ 446 (605)
+++..
T Consensus 316 l~~al 320 (373)
T 1hz4_A 316 LLDAL 320 (373)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55443
No 84
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.20 E-value=1e-10 Score=122.35 Aligned_cols=163 Identities=13% Similarity=0.162 Sum_probs=130.8
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhcC--CCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHH
Q 007400 351 NTIVMSSLIDMYSKCGCLNDGRQVFDLTD--NKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPD-KITLAVILN 427 (605)
Q Consensus 351 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~l~~ 427 (605)
+...++.|..+|.+.|++++|++.|++.. .+.+..+|..+..+|.+.|++++|+..|++.++ +.|+ ...+..+..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~--l~P~~~~a~~nLg~ 85 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR--ISPTFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHH
Confidence 45667777777888888888888777643 222567888888888899999999999998888 5665 568888888
Q ss_pred HHhccCcHHHHHHHHHHchHhhCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHH
Q 007400 428 ACTHSGLVQEGLTYFESMTHDLGIIPN-QEHHACLIELLAQAGCSDQLMNQLEKMP--YEHDSYLWNALHGVCRIHGNID 504 (605)
Q Consensus 428 ~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~ 504 (605)
++...|++++|++.|+++. .+.|+ ...+..+..+|.+.|++++|++.|++.. .+.+...+..++.++...|+++
T Consensus 86 ~l~~~g~~~~A~~~~~kAl---~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~ 162 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAI---QINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWT 162 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHH---HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCT
T ss_pred HHHHcCCHHHHHHHHHHHH---HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHH
Confidence 9999999999999999888 34565 7788889999999999999999988762 2456788888999999999999
Q ss_pred HHHHHHHHHHhcCC
Q 007400 505 MGRKVVDQLIDQNP 518 (605)
Q Consensus 505 ~A~~~~~~~~~~~p 518 (605)
+|.+.+++++++.|
T Consensus 163 ~A~~~~~kal~l~~ 176 (723)
T 4gyw_A 163 DYDERMKKLVSIVA 176 (723)
T ss_dssp THHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCh
Confidence 99999999887643
No 85
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.19 E-value=9.5e-10 Score=98.51 Aligned_cols=182 Identities=12% Similarity=0.070 Sum_probs=121.7
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhcCC-CCC----cchHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH----HHH
Q 007400 352 TIVMSSLIDMYSKCGCLNDGRQVFDLTDN-KEN----SMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDK----ITL 422 (605)
Q Consensus 352 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~----~~~ 422 (605)
...+..+...+.+.|++++|+..|+.+.. .|+ ...+..++.++...|++++|+..|+++++. .|+. ..+
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~--~P~~~~~~~a~ 81 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL--NPTHPNIDYVM 81 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTTHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCcHHHHH
Confidence 34455566777888888888888887653 122 235677777888888888888888888773 4432 244
Q ss_pred HHHHHHHhc------------------cCcHHHHHHHHHHchHhhCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHhCCC
Q 007400 423 AVILNACTH------------------SGLVQEGLTYFESMTHDLGIIPNQ-EHHACLIELLAQAGCSDQLMNQLEKMPY 483 (605)
Q Consensus 423 ~~l~~~~~~------------------~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 483 (605)
..+..++.. .|++++|...|+++. ...|+. .....+... +......
T Consensus 82 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l---~~~P~~~~a~~a~~~l----~~~~~~~-------- 146 (225)
T 2yhc_A 82 YMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLV---RGYPNSQYTTDATKRL----VFLKDRL-------- 146 (225)
T ss_dssp HHHHHHHHHHHC--------------CCHHHHHHHHHHHHHH---TTCTTCTTHHHHHHHH----HHHHHHH--------
T ss_pred HHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHH---HHCcCChhHHHHHHHH----HHHHHHH--------
Confidence 445555543 456777777777766 233432 121111110 0000000
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC---chHHHHHHHHHhcCCchHHHHHHHHHHhCCCc
Q 007400 484 EHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSS---ATHGLLSSIYSALGKGRLVEKVRQLINERQFK 553 (605)
Q Consensus 484 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 553 (605)
......++..+...|++++|+..|+++++..|+++ .++..++.+|.+.|++++|.+.++.+...+..
T Consensus 147 ---~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~ 216 (225)
T 2yhc_A 147 ---AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSN 216 (225)
T ss_dssp ---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSC
T ss_pred ---HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC
Confidence 01123567788899999999999999999999876 57889999999999999999999999876543
No 86
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.19 E-value=1.4e-10 Score=108.64 Aligned_cols=201 Identities=8% Similarity=-0.048 Sum_probs=135.3
Q ss_pred chHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcC-------CCC-CcchHHHHHHHHHHcCCHHHH
Q 007400 332 SLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTD-------NKE-NSMLWNTMISALTQHGYDEQA 403 (605)
Q Consensus 332 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~~-~~~~~~~l~~~~~~~g~~~~a 403 (605)
++++|...+.++ ...|...|++++|.+.|+... .++ ...+|+.+...|...|++++|
T Consensus 32 ~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A 96 (292)
T 1qqe_A 32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96 (292)
T ss_dssp HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 366666665554 334566677777776666432 111 135677888888888899988
Q ss_pred HHHHHHHHHCCCC-CC----HHHHHHHHHHHhcc-CcHHHHHHHHHHchHhhCCCCC----HHHHHHHHHHHHhcCChHH
Q 007400 404 IRLFHDMVRSSVK-PD----KITLAVILNACTHS-GLVQEGLTYFESMTHDLGIIPN----QEHHACLIELLAQAGCSDQ 473 (605)
Q Consensus 404 ~~~~~~m~~~~~~-p~----~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~ 473 (605)
+..+++.++.... .+ ..++..+..+|... |++++|+..|++...-..-..+ ..++..++..|.+.|++++
T Consensus 97 ~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~ 176 (292)
T 1qqe_A 97 VDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIE 176 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHH
Confidence 8888887752100 01 24788888889886 9999999999988732111111 3568889999999999999
Q ss_pred HHHHHHhCC-CCC---CH-----HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCch-----HHHHHHHHH--hcCCc
Q 007400 474 LMNQLEKMP-YEH---DS-----YLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSAT-----HGLLSSIYS--ALGKG 537 (605)
Q Consensus 474 A~~~~~~~~-~~~---~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~-----~~~l~~~~~--~~g~~ 537 (605)
|+..+++.. ..| .. ..+..++.++...|++++|+..|++++++.|..... +..++.++. ..+++
T Consensus 177 A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~ 256 (292)
T 1qqe_A 177 ASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQL 256 (292)
T ss_dssp HHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTH
T ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHH
Confidence 999998752 112 21 256778888999999999999999999998876543 345566664 45678
Q ss_pred hHHHHHHHHH
Q 007400 538 RLVEKVRQLI 547 (605)
Q Consensus 538 ~~a~~~~~~~ 547 (605)
++|+..|+.+
T Consensus 257 ~~A~~~~~~~ 266 (292)
T 1qqe_A 257 SEHCKEFDNF 266 (292)
T ss_dssp HHHHHHHTTS
T ss_pred HHHHHHhccC
Confidence 8888877644
No 87
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.18 E-value=3.1e-09 Score=103.74 Aligned_cols=218 Identities=8% Similarity=0.029 Sum_probs=152.3
Q ss_pred HHHhcCChHHHHHHHhhCCC-----C----ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCC--C---CC-ChHHHHHHH
Q 007400 260 GYAKLGDMESASKLFNEMPE-----K----NPVSWTTLIAGYTRNGLGQKALELFTRMMILR--I---RP-NQHTFSSCL 324 (605)
Q Consensus 260 ~~~~~~~~~~A~~~~~~~~~-----~----~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g--~---~p-~~~~~~~ll 324 (605)
.+...|++++|...|++..+ + ...++..+...|...|+++.|+..+++..+.- . .+ ...++..+.
T Consensus 110 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg 189 (378)
T 3q15_A 110 YEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIA 189 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHH
T ss_pred HHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHH
Confidence 34455666666666555432 1 23467778888888888888888888776521 1 11 234666777
Q ss_pred HHHhcccchHHHHHHHHHHHHc----CCC-CChhHHHHHHHHHHhcCChHHHHHHHHhcCC-----C-C-CcchHHHHHH
Q 007400 325 CACASIVSLKHGKQVHGFLIRT----NFR-SNTIVMSSLIDMYSKCGCLNDGRQVFDLTDN-----K-E-NSMLWNTMIS 392 (605)
Q Consensus 325 ~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~-~-~~~~~~~l~~ 392 (605)
.++...|+++.|...+.++.+. +.+ ....++..+..+|...|++++|.+.|++... . | ...++..+..
T Consensus 190 ~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~ 269 (378)
T 3q15_A 190 GNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSW 269 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHH
Confidence 8888888888888888877653 111 1234677788889999999999988886542 2 1 3456778888
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCC---CCC-HHHHHHHHHHHhccCc---HHHHHHHHHHchHhhCCCCC-HHHHHHHHHH
Q 007400 393 ALTQHGYDEQAIRLFHDMVRSSV---KPD-KITLAVILNACTHSGL---VQEGLTYFESMTHDLGIIPN-QEHHACLIEL 464 (605)
Q Consensus 393 ~~~~~g~~~~a~~~~~~m~~~~~---~p~-~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~ 464 (605)
.+...|++++|...+++..+... .|. ...+..+...+...++ +.+|+.++++.. ..|+ ...+..+...
T Consensus 270 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~----~~~~~~~~~~~la~~ 345 (378)
T 3q15_A 270 TLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKN----LHAYIEACARSAAAV 345 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCC----ChhHHHHHHHHHHHH
Confidence 99999999999999999886421 222 2356666677778888 777877777643 3333 5577789999
Q ss_pred HHhcCChHHHHHHHHhC
Q 007400 465 LAQAGCSDQLMNQLEKM 481 (605)
Q Consensus 465 ~~~~g~~~~A~~~~~~~ 481 (605)
|...|++++|...+++.
T Consensus 346 y~~~g~~~~A~~~~~~a 362 (378)
T 3q15_A 346 FESSCHFEQAAAFYRKV 362 (378)
T ss_dssp HHHTTCHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHH
Confidence 99999999999998864
No 88
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.18 E-value=2.4e-11 Score=101.02 Aligned_cols=138 Identities=13% Similarity=0.032 Sum_probs=93.4
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHchHhhCCCCC-HHHHHHHHHHHHhcCCh
Q 007400 394 LTQHGYDEQAIRLFHDMVRSSVKPDK-ITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPN-QEHHACLIELLAQAGCS 471 (605)
Q Consensus 394 ~~~~g~~~~a~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~ 471 (605)
+...|++++|+..+++... ..|+. ..+..+...|...|++++|+..|+++. .+.|+ ..++..+..+|.+.|++
T Consensus 7 ~~~~~~~e~ai~~~~~a~~--~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al---~~~p~~~~a~~~lg~~~~~~~~~ 81 (150)
T 4ga2_A 7 RRSKADVERYIASVQGSTP--SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYI---NVQERDPKAHRFLGLLYELEENT 81 (150)
T ss_dssp CCCHHHHHHHHHHHHHHSC--SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHH---HHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHcChHHHHHHHHHHhcc--cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHH---HhCCCCHHHHHHHHHHHHHcCch
Confidence 3445666666666666655 23432 355566666777777777777777766 23444 56677777777777777
Q ss_pred HHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHH-HHHHHhcCCCCCchHHHHHHHHHhcCC
Q 007400 472 DQLMNQLEKMP--YEHDSYLWNALHGVCRIHGNIDMGRKV-VDQLIDQNPQSSATHGLLSSIYSALGK 536 (605)
Q Consensus 472 ~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~-~~~~~~~~p~~~~~~~~l~~~~~~~g~ 536 (605)
++|+..|++.. .+.+..+|..++..+...|++++|... ++++++++|+++.+|...+.++...|+
T Consensus 82 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 82 DKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 77777776642 234577788888888888887765554 588888888888888888888877775
No 89
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.18 E-value=8e-11 Score=97.79 Aligned_cols=122 Identities=11% Similarity=-0.016 Sum_probs=103.5
Q ss_pred HHHHHhccCcHHHHHHHHHHchHhhCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcC
Q 007400 425 ILNACTHSGLVQEGLTYFESMTHDLGIIPN-QEHHACLIELLAQAGCSDQLMNQLEKMP--YEHDSYLWNALHGVCRIHG 501 (605)
Q Consensus 425 l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g 501 (605)
|...+...|++++|+..++... ...|+ ...+..+..+|.+.|++++|++.|++.. .+.+..+|..++.++...|
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~---~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~ 79 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGST---PSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEE 79 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHS---CSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred hHHHHHHcChHHHHHHHHHHhc---ccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 4556777899999999999887 45565 4566789999999999999999999862 3467899999999999999
Q ss_pred CHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHH-HHHHHh
Q 007400 502 NIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKV-RQLINE 549 (605)
Q Consensus 502 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~-~~~~~~ 549 (605)
++++|+..|+++++++|+++.++..++.+|.+.|++++|.+. ++++.+
T Consensus 80 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~ 128 (150)
T 4ga2_A 80 NTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAK 128 (150)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999887765 577765
No 90
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.15 E-value=3e-10 Score=105.75 Aligned_cols=222 Identities=11% Similarity=0.110 Sum_probs=150.3
Q ss_pred hcccchHHHHHHHHHHHHc-------CCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCC---------CC-CcchHHHH
Q 007400 328 ASIVSLKHGKQVHGFLIRT-------NFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDN---------KE-NSMLWNTM 390 (605)
Q Consensus 328 ~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---------~~-~~~~~~~l 390 (605)
...|+++.|...+++..+. ..+....++..+...|...|++++|...|+.... .| ...++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 4567777777777776652 2233456778888999999999999988875431 11 34567888
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHC------CCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHchHhh-----CCCCC-HHH
Q 007400 391 ISALTQHGYDEQAIRLFHDMVRS------SVKPD-KITLAVILNACTHSGLVQEGLTYFESMTHDL-----GIIPN-QEH 457 (605)
Q Consensus 391 ~~~~~~~g~~~~a~~~~~~m~~~------~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-----~~~p~-~~~ 457 (605)
...+...|++++|...+++.... .-.|+ ..++..+...+...|++++|..+++++.... +..|. ..+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 88899999999999999988763 11232 4578888888999999999999999887321 11333 567
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhCC----------CCC-CHHHHHHHHHHHHhcC------CHHHHHHHHHHHHhcCCCC
Q 007400 458 HACLIELLAQAGCSDQLMNQLEKMP----------YEH-DSYLWNALHGVCRIHG------NIDMGRKVVDQLIDQNPQS 520 (605)
Q Consensus 458 ~~~l~~~~~~~g~~~~A~~~~~~~~----------~~~-~~~~~~~l~~~~~~~g------~~~~A~~~~~~~~~~~p~~ 520 (605)
+..+..+|...|++++|...+++.. ..+ ....|..+...+...+ .+..+...++......|..
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTV 251 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHH
Confidence 8888899999999999998887652 111 2223333333333322 2334444444333345556
Q ss_pred CchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 007400 521 SATHGLLSSIYSALGKGRLVEKVRQLINE 549 (605)
Q Consensus 521 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 549 (605)
..++..++.+|...|++++|..++++..+
T Consensus 252 ~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 252 NTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 67889999999999999999999998865
No 91
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.13 E-value=1.3e-09 Score=101.54 Aligned_cols=174 Identities=12% Similarity=0.052 Sum_probs=140.3
Q ss_pred HHHHHHHhcCCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHchHh
Q 007400 370 DGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKP-DKITLAVILNACTHSGLVQEGLTYFESMTHD 448 (605)
Q Consensus 370 ~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 448 (605)
.....+...... +...+..+...+...|++++|+..|++.++ ..| +...+..+..++...|++++|...++++.
T Consensus 104 ~l~~~l~~~lp~-~~~~~~~~a~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~-- 178 (287)
T 3qou_A 104 AIRALLDXVLPR-EEELXAQQAMQLMQESNYTDALPLLXDAWQ--LSNQNGEIGLLLAETLIALNRSEDAEAVLXTIP-- 178 (287)
T ss_dssp HHHHHHHHHSCC-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSC--
T ss_pred HHHHHHHHHcCC-chhhHHHHHHHHHhCCCHHHHHHHHHHHHH--hCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCc--
Confidence 334444443322 556677788889999999999999999998 466 45688999999999999999999999988
Q ss_pred hCCCCCHHH-HHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC--Cch
Q 007400 449 LGIIPNQEH-HACLIELLAQAGCSDQLMNQLEKMP--YEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQS--SAT 523 (605)
Q Consensus 449 ~~~~p~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~--~~~ 523 (605)
...|+... .......+.+.|+.++|...+++.. .+.+...+..++.++...|++++|+..|+++++.+|++ ...
T Consensus 179 -~~~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a 257 (287)
T 3qou_A 179 -LQDQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQT 257 (287)
T ss_dssp -GGGCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHH
T ss_pred -hhhcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchH
Confidence 33566433 2333334677788888888887752 35678899999999999999999999999999999988 789
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHh
Q 007400 524 HGLLSSIYSALGKGRLVEKVRQLINE 549 (605)
Q Consensus 524 ~~~l~~~~~~~g~~~~a~~~~~~~~~ 549 (605)
+..++.++...|+.++|...+++...
T Consensus 258 ~~~l~~~~~~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 258 RXTFQEILAALGTGDALASXYRRQLY 283 (287)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence 99999999999999999999887643
No 92
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.12 E-value=1.9e-09 Score=99.16 Aligned_cols=204 Identities=7% Similarity=-0.054 Sum_probs=146.0
Q ss_pred CCChHHHHHHHHHHhcccchHHHHHHHHHHHHcCCCCC---hhHHHHHHHHHHhcCChHHHHHHHHhcCCC-C---C-cc
Q 007400 314 RPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSN---TIVMSSLIDMYSKCGCLNDGRQVFDLTDNK-E---N-SM 385 (605)
Q Consensus 314 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~---~-~~ 385 (605)
+.+...+......+...|++++|...|+.+++.. +.+ ...+..+..+|.+.|++++|...|+..... | . ..
T Consensus 12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 90 (261)
T 3qky_A 12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQ 90 (261)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHH
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHH
Confidence 3455677778888999999999999999999875 333 667888999999999999999999976531 2 2 34
Q ss_pred hHHHHHHHHHH--------cCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCcHHHHHHHHHHchHhhCCCCCHH
Q 007400 386 LWNTMISALTQ--------HGYDEQAIRLFHDMVRSSVKPDKI-TLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQE 456 (605)
Q Consensus 386 ~~~~l~~~~~~--------~g~~~~a~~~~~~m~~~~~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~ 456 (605)
.+..+..++.. .|++++|+..|+++++. .|+.. ....+ ..+..+... -..
T Consensus 91 a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~--------------~~~~~~~~~-----~~~ 149 (261)
T 3qky_A 91 AEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR--YPNHELVDDAT--------------QKIRELRAK-----LAR 149 (261)
T ss_dssp HHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH--CTTCTTHHHHH--------------HHHHHHHHH-----HHH
T ss_pred HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH--CcCchhHHHHH--------------HHHHHHHHH-----HHH
Confidence 67778888888 99999999999999984 55432 22111 111111100 012
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhCC-CCC----CHHHHHHHHHHHHhc----------CCHHHHHHHHHHHHhcCCCCC
Q 007400 457 HHACLIELLAQAGCSDQLMNQLEKMP-YEH----DSYLWNALHGVCRIH----------GNIDMGRKVVDQLIDQNPQSS 521 (605)
Q Consensus 457 ~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~----~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~p~~~ 521 (605)
.+..++.+|.+.|++++|+..|+++. ..| ....+..++.++... |++++|...|+++++..|+++
T Consensus 150 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 229 (261)
T 3qky_A 150 KQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSP 229 (261)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCCh
Confidence 35567788888899999988887752 112 245677777777765 899999999999999999886
Q ss_pred c---hHHHHHHHHHhcCCchH
Q 007400 522 A---THGLLSSIYSALGKGRL 539 (605)
Q Consensus 522 ~---~~~~l~~~~~~~g~~~~ 539 (605)
. +...+..++.+.|++++
T Consensus 230 ~~~~a~~~l~~~~~~~~~~~~ 250 (261)
T 3qky_A 230 LLRTAEELYTRARQRLTELEG 250 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHhhh
Confidence 4 34455555555555443
No 93
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.12 E-value=6.6e-09 Score=95.04 Aligned_cols=175 Identities=11% Similarity=0.026 Sum_probs=99.6
Q ss_pred HHHHHHhcCC--CCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHchH
Q 007400 371 GRQVFDLTDN--KENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKP-DKITLAVILNACTHSGLVQEGLTYFESMTH 447 (605)
Q Consensus 371 A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 447 (605)
|+..|++... .++..++..+..++...|++++|++++.+.+..+..+ +...+..++..+.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~- 163 (310)
T 3mv2_B 85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT- 163 (310)
T ss_dssp CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH-
Confidence 4555554432 2344444556666666677777777776665543212 33466666666777777777777777665
Q ss_pred hhCCCC-----CHHHHHHHHHH--HHhcC--ChHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-
Q 007400 448 DLGIIP-----NQEHHACLIEL--LAQAG--CSDQLMNQLEKMP-YEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQ- 516 (605)
Q Consensus 448 ~~~~~p-----~~~~~~~l~~~--~~~~g--~~~~A~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~- 516 (605)
...| +..+...|+.+ ....| ++.+|..+|+++. ..|+......+..++...|++++|++.++.+.+.
T Consensus 164 --~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~ 241 (310)
T 3mv2_B 164 --NAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDY 241 (310)
T ss_dssp --HHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHH
T ss_pred --hcCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 2344 23344444433 22233 6677777776652 2244222233333666677777777777766554
Q ss_pred ---------CCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 007400 517 ---------NPQSSATHGLLSSIYSALGKGRLVEKVRQLINER 550 (605)
Q Consensus 517 ---------~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 550 (605)
+|+++.++..++.+....|+ +|.+++.++.+.
T Consensus 242 p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~ 282 (310)
T 3mv2_B 242 YSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL 282 (310)
T ss_dssp HHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT
T ss_pred ccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh
Confidence 36666666666666666665 666666666654
No 94
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.12 E-value=3.8e-09 Score=93.42 Aligned_cols=173 Identities=8% Similarity=-0.013 Sum_probs=137.9
Q ss_pred HHHHHHhcCCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC----cHHHHHHHHHHch
Q 007400 371 GRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSG----LVQEGLTYFESMT 446 (605)
Q Consensus 371 A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g----~~~~a~~~~~~~~ 446 (605)
|.+.|+...+..++..+..+...|...+++++|+.+|++..+.| +...+..+...|.. + ++++|..+|++..
T Consensus 5 A~~~~~~aa~~g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~ 80 (212)
T 3rjv_A 5 PGSQYQQQAEAGDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAV 80 (212)
T ss_dssp TTHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHH
Confidence 34444444434477788888888888899999999999988865 56777778888877 6 8999999999887
Q ss_pred HhhCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHhCCCCCC----HHHHHHHHHHHHh----cCCHHHHHHHHHHHH
Q 007400 447 HDLGIIPNQEHHACLIELLAQ----AGCSDQLMNQLEKMPYEHD----SYLWNALHGVCRI----HGNIDMGRKVVDQLI 514 (605)
Q Consensus 447 ~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~----~~~~~~l~~~~~~----~g~~~~A~~~~~~~~ 514 (605)
+.+ ++..+..|...|.. .+++++|+++|++.....+ +..+..|+..|.. .+++++|+..|+++.
T Consensus 81 -~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~ 156 (212)
T 3rjv_A 81 -EAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSS 156 (212)
T ss_dssp -HTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHH
T ss_pred -HCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 322 46677788888877 7899999999988642333 7888889999988 889999999999999
Q ss_pred hcCCCCCchHHHHHHHHHhc-C-----CchHHHHHHHHHHhCCC
Q 007400 515 DQNPQSSATHGLLSSIYSAL-G-----KGRLVEKVRQLINERQF 552 (605)
Q Consensus 515 ~~~p~~~~~~~~l~~~~~~~-g-----~~~~a~~~~~~~~~~~~ 552 (605)
+. |.++..+..|+.+|... | ++++|...+++..+.|.
T Consensus 157 ~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 157 SL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred Hc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 98 66888999999999865 3 89999999999887663
No 95
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.12 E-value=6.3e-09 Score=95.16 Aligned_cols=182 Identities=12% Similarity=0.100 Sum_probs=130.6
Q ss_pred HHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhc-CCC---CCcchHHHHHHHHHHcCCHHHHHHHHHHHH
Q 007400 336 GKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLT-DNK---ENSMLWNTMISALTQHGYDEQAIRLFHDMV 411 (605)
Q Consensus 336 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 411 (605)
+...+++..+.+ +++...+..+..++...|++++|++++... ... .+...+..++..+.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 455566555544 445555567778888888888888888875 322 245667778888999999999999999998
Q ss_pred HCCCCC-----CHHHHHHHHHH--Hhc--cCcHHHHHHHHHHchHhhCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhCC
Q 007400 412 RSSVKP-----DKITLAVILNA--CTH--SGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMP 482 (605)
Q Consensus 412 ~~~~~p-----~~~~~~~l~~~--~~~--~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 482 (605)
+ ..| +..+...++.+ ... .+++.+|..+|+++. .-.|+......+..++.+.|++++|.+.++.+.
T Consensus 164 ~--~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~---~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~ 238 (310)
T 3mv2_B 164 N--AIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELS---QTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLL 238 (310)
T ss_dssp H--HSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHH---TTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred h--cCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHH---HhCCCcccHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 8 567 35566666655 333 338999999999987 334553333344448899999999999987642
Q ss_pred C------------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHH
Q 007400 483 Y------------EHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHG 525 (605)
Q Consensus 483 ~------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 525 (605)
. +.++.++..++......|+ +|.++++++.+..|+++.+..
T Consensus 239 ~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~d 291 (310)
T 3mv2_B 239 SDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIKH 291 (310)
T ss_dssp SHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHHH
T ss_pred HhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHHH
Confidence 1 3456677667666667787 899999999999998776443
No 96
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.12 E-value=7.4e-10 Score=94.93 Aligned_cols=159 Identities=13% Similarity=0.102 Sum_probs=114.9
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHchHhhCCCCCHHHHHHHHHH
Q 007400 386 LWNTMISALTQHGYDEQAIRLFHDMVRSSVKP-DKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIEL 464 (605)
Q Consensus 386 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~ 464 (605)
.+..+...+...|++++|+..|++.++ ..| +...+..+..++...|++++|...++++... .|+......+...
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~---~p~~~~~~~~~~~ 82 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSD--ELQSRGDVKLAKADCLLETKQFELAQELLATIPLE---YQDNSYKSLIAKL 82 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCH--HHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG---GCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH--HCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc---cCChHHHHHHHHH
Confidence 455566677778888888888877766 345 3457777777788888888888888877632 3333333222212
Q ss_pred -HHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC--CchHHHHHHHHHhcCCchH
Q 007400 465 -LAQAGCSDQLMNQLEKMP--YEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQS--SATHGLLSSIYSALGKGRL 539 (605)
Q Consensus 465 -~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~~~~ 539 (605)
+...+...+|...+++.. .+.+...+..++.++...|++++|...|+++++.+|+. +..+..++.++...|+.++
T Consensus 83 ~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~ 162 (176)
T 2r5s_A 83 ELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNA 162 (176)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCH
T ss_pred HHHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCc
Confidence 122223334566666641 23568899999999999999999999999999999865 5589999999999999999
Q ss_pred HHHHHHHHHh
Q 007400 540 VEKVRQLINE 549 (605)
Q Consensus 540 a~~~~~~~~~ 549 (605)
|...|++...
T Consensus 163 A~~~y~~al~ 172 (176)
T 2r5s_A 163 IASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999987653
No 97
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.09 E-value=1.1e-09 Score=115.12 Aligned_cols=168 Identities=11% Similarity=-0.025 Sum_probs=97.4
Q ss_pred HhcCChHHHHHHHHhcC--------C--CCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhc
Q 007400 363 SKCGCLNDGRQVFDLTD--------N--KENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKP-DKITLAVILNACTH 431 (605)
Q Consensus 363 ~~~g~~~~A~~~~~~~~--------~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~ 431 (605)
...|++++|++.++... . +.+...+..+...+...|++++|+..|++.++ ..| +...+..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAE--RVGWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HHCCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhc--cCcchHHHHHHHHHHHHH
Confidence 45566666666665442 1 12344556666666666666666666666665 334 34466666666666
Q ss_pred cCcHHHHHHHHHHchHhhCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHH
Q 007400 432 SGLVQEGLTYFESMTHDLGIIPN-QEHHACLIELLAQAGCSDQLMNQLEKMP--YEHDSYLWNALHGVCRIHGNIDMGRK 508 (605)
Q Consensus 432 ~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~ 508 (605)
.|++++|...|+++. ...|+ ...+..+..+|.+.|++++ ++.|++.. .+.+...|..++.++...|++++|+.
T Consensus 480 ~g~~~~A~~~~~~al---~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~ 555 (681)
T 2pzi_A 480 TGDYDSATKHFTEVL---DTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVR 555 (681)
T ss_dssp HTCHHHHHHHHHHHH---HHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cCCHHHHHHHHHHHH---HhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHH
Confidence 666666666666665 22343 4556666666666666666 66665541 23345566666666666666666666
Q ss_pred HHHHHHhcCCCCCchHHHHHHHHHhcCC
Q 007400 509 VVDQLIDQNPQSSATHGLLSSIYSALGK 536 (605)
Q Consensus 509 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 536 (605)
.|+++++++|++..++..++.++...|+
T Consensus 556 ~~~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 556 TLDEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HHHhhcccCcccHHHHHHHHHHHHccCC
Confidence 6666666666666666666666655443
No 98
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.08 E-value=3.4e-10 Score=93.41 Aligned_cols=101 Identities=6% Similarity=-0.074 Sum_probs=91.8
Q ss_pred CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHH
Q 007400 450 GIIPN-QEHHACLIELLAQAGCSDQLMNQLEKMP--YEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGL 526 (605)
Q Consensus 450 ~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 526 (605)
.+.|+ ...+..+...+.+.|++++|...|++.. .+.+...|..++.++...|++++|+..|+++++++|+++..+..
T Consensus 30 ~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~ 109 (151)
T 3gyz_A 30 AIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFH 109 (151)
T ss_dssp CSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHH
Confidence 56666 6688888999999999999999998862 35678899999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCchHHHHHHHHHHhC
Q 007400 527 LSSIYSALGKGRLVEKVRQLINER 550 (605)
Q Consensus 527 l~~~~~~~g~~~~a~~~~~~~~~~ 550 (605)
++.+|...|++++|+..|+++.+.
T Consensus 110 lg~~~~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 110 TGQCQLRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh
Confidence 999999999999999999999875
No 99
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.07 E-value=3.1e-09 Score=86.13 Aligned_cols=125 Identities=17% Similarity=0.144 Sum_probs=72.7
Q ss_pred HHHHHHhccCcHHHHHHHHHHchHhhCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcC
Q 007400 424 VILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMP--YEHDSYLWNALHGVCRIHG 501 (605)
Q Consensus 424 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g 501 (605)
.+...+...|++++|..+++++... . +.+...+..++..+...|++++|...++++. .+.+...+..++..+...|
T Consensus 6 ~l~~~~~~~~~~~~A~~~~~~~~~~-~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 83 (136)
T 2fo7_A 6 NLGNAYYKQGDYDEAIEYYQKALEL-D-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQG 83 (136)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHH-C-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHc-C-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHhc
Confidence 3344444444444444444444411 1 1123344444444555555555555554431 1234556666677777777
Q ss_pred CHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 007400 502 NIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINER 550 (605)
Q Consensus 502 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 550 (605)
++++|...++++++..|.+...+..++.++...|++++|...++++.+.
T Consensus 84 ~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 84 DYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 7777777777777777777777777777777777777777777776543
No 100
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.06 E-value=1.6e-09 Score=100.83 Aligned_cols=198 Identities=9% Similarity=0.065 Sum_probs=112.2
Q ss_pred HHHHHHHHHhcccchHHHHHHHHHHHHc------CC-CCChhHHHHHHHHHHhcCChHHHHHHHHhcCC----------C
Q 007400 319 TFSSCLCACASIVSLKHGKQVHGFLIRT------NF-RSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDN----------K 381 (605)
Q Consensus 319 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----------~ 381 (605)
++..+...+...|++++|...+.++.+. +- +....++..+..+|...|++++|.+.|+.... +
T Consensus 45 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 124 (283)
T 3edt_B 45 MLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHP 124 (283)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCCh
Confidence 3334444444444444444444444332 11 11233455555556666666666555554321 1
Q ss_pred CCcchHHHHHHHHHHcCCHHHHHHHHHHHHHC------CCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHchHhh-----
Q 007400 382 ENSMLWNTMISALTQHGYDEQAIRLFHDMVRS------SVKPD-KITLAVILNACTHSGLVQEGLTYFESMTHDL----- 449 (605)
Q Consensus 382 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~------~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----- 449 (605)
....++..+...+...|++++|...++++.+. +-.|+ ..++..+..++...|++++|..+++++....
T Consensus 125 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~ 204 (283)
T 3edt_B 125 DVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEF 204 (283)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Confidence 12346677777788888888888888877763 11332 3477788888888888888888888877321
Q ss_pred -CCCCC-HHHHHHHHHHHHhcCC------hHHHHHHHHhCCC-CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 007400 450 -GIIPN-QEHHACLIELLAQAGC------SDQLMNQLEKMPY-EH-DSYLWNALHGVCRIHGNIDMGRKVVDQLIDQ 516 (605)
Q Consensus 450 -~~~p~-~~~~~~l~~~~~~~g~------~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 516 (605)
...+. ...+..+...+...+. +..+...++.... .| ...++..++.+|...|++++|..+++++++.
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 205 GSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp SSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred CCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 12222 3344444444433332 3444455555431 12 3457778899999999999999999999875
No 101
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.06 E-value=7.8e-08 Score=89.82 Aligned_cols=200 Identities=9% Similarity=0.050 Sum_probs=115.7
Q ss_pred HhhhcCChhHHHHHHHHHHHhCCC----CCchhhHHHHHHHHHhcCChhHHHHHhccCCCCCchHHHHHHHHHHccCChH
Q 007400 61 QCAESKSLKLGKRVHLHLKLTQRK----TPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMK 136 (605)
Q Consensus 61 ~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 136 (605)
.+...|++++|.+.|...+..... +....+|+.+..+|...|++++|+..+++. +..+...|+..
T Consensus 46 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~A-----------l~l~~~~g~~~ 114 (292)
T 1qqe_A 46 IYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENA-----------IQIFTHRGQFR 114 (292)
T ss_dssp HHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH-----------HHHHHHcCCHH
Confidence 445556666666666655443211 111124455555555555555555443322 11222222222
Q ss_pred HHHHHHhhcCCCCceeHHHHHHHHHhc-CChHHHHHHHHHHHhCCCCC-C----hhhHHHHHHHHhccCChHHHHHHHHH
Q 007400 137 HARNLFDNMAERDVVSWNTMIIGYAKS-GAVEEGLKFYKVLRRFSISC-N----EFSFAGILTICVKLEELKLTRQVHGQ 210 (605)
Q Consensus 137 ~A~~~~~~~~~~~~~~~~~li~~~~~~-~~~~~a~~~~~~m~~~~~~p-~----~~~~~~ll~~~~~~~~~~~a~~~~~~ 210 (605)
.+ ..+++.+...|... |++++|+..|++..+..... + ..++..+...+...|++++|...+++
T Consensus 115 ~~-----------a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 183 (292)
T 1qqe_A 115 RG-----------ANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSK 183 (292)
T ss_dssp HH-----------HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HH-----------HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 21 23566777888885 88888888888876521100 1 34577778888888888888888888
Q ss_pred HHHhCCCCChh------HHHHHHHHHHhcCChHHHHHHHhhcCCCCcc--------hHHHHHHHHH--hcCChHHHHHHH
Q 007400 211 VLVTGFLSNVV------ISSSIVDAYAKCGELSDARRLFDETDARDVL--------TWTTMVSGYA--KLGDMESASKLF 274 (605)
Q Consensus 211 ~~~~~~~~~~~------~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--------~~~~li~~~~--~~~~~~~A~~~~ 274 (605)
..+..+..... .+..+..++...|++++|...|++...-++. .+..++..+. ..+++++|...|
T Consensus 184 al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~ 263 (292)
T 1qqe_A 184 LIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEF 263 (292)
T ss_dssp HHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHH
T ss_pred HHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHh
Confidence 88765433221 4667777888888888888888887654322 1233344443 345677777777
Q ss_pred hhCCCCCh
Q 007400 275 NEMPEKNP 282 (605)
Q Consensus 275 ~~~~~~~~ 282 (605)
+++...++
T Consensus 264 ~~~~~l~~ 271 (292)
T 1qqe_A 264 DNFMRLDK 271 (292)
T ss_dssp TTSSCCCH
T ss_pred ccCCccHH
Confidence 76665544
No 102
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.05 E-value=1.2e-09 Score=90.38 Aligned_cols=107 Identities=13% Similarity=-0.003 Sum_probs=91.0
Q ss_pred HHHHchHhhCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 007400 441 YFESMTHDLGIIPN-QEHHACLIELLAQAGCSDQLMNQLEKMP--YEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQN 517 (605)
Q Consensus 441 ~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 517 (605)
.++++. .+.|+ ...+..+...+.+.|++++|...|++.. .+.+...|..++.++...|++++|+..|+++++++
T Consensus 9 ~~~~al---~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~ 85 (148)
T 2vgx_A 9 TIAMLN---EISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD 85 (148)
T ss_dssp SHHHHT---TCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred hHHHHH---cCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 344444 45564 5677788888899999999999988762 34678889999999999999999999999999999
Q ss_pred CCCCchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 007400 518 PQSSATHGLLSSIYSALGKGRLVEKVRQLINER 550 (605)
Q Consensus 518 p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 550 (605)
|+++..+..++.+|...|++++|+..|+...+.
T Consensus 86 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 86 IXEPRFPFHAAECLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999988764
No 103
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.04 E-value=2.1e-09 Score=94.92 Aligned_cols=135 Identities=11% Similarity=0.145 Sum_probs=102.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHchHhhCCCCC-HHHHHHHHHHH
Q 007400 388 NTMISALTQHGYDEQAIRLFHDMVRSSVKP-DKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPN-QEHHACLIELL 465 (605)
Q Consensus 388 ~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~ 465 (605)
..+..++...|++++|+..|++.++ +.| +...+..+..++...|++++|...|+++. .+.|+ ...+..+..+|
T Consensus 58 ~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al---~~~P~~~~a~~~lg~~~ 132 (208)
T 3urz_A 58 TELALAYKKNRNYDKAYLFYKELLQ--KAPNNVDCLEACAEMQVCRGQEKDALRMYEKIL---QLEADNLAANIFLGNYY 132 (208)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH---HHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH---HcCCCCHHHHHHHHHHH
Confidence 3488889999999999999999998 456 56789999999999999999999999998 34565 77888888888
Q ss_pred HhcCC--hHHHHHHHHhCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHH
Q 007400 466 AQAGC--SDQLMNQLEKMPYEHDS--YLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSS 529 (605)
Q Consensus 466 ~~~g~--~~~A~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 529 (605)
...|+ .+.+...+++.. .|+. ..+...+.++...|++++|+..|++++++.|+ ......+..
T Consensus 133 ~~~~~~~~~~~~~~~~~~~-~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~-~~~~~~l~~ 198 (208)
T 3urz_A 133 YLTAEQEKKKLETDYKKLS-SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPS-TEAQKTLDK 198 (208)
T ss_dssp HHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCC-HHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHh-CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-HHHHHHHHH
Confidence 76654 445666666654 3443 34555677777889999999999999999994 333333333
No 104
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.04 E-value=1.9e-09 Score=86.20 Aligned_cols=99 Identities=8% Similarity=-0.035 Sum_probs=66.1
Q ss_pred CCCC-HHHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHH
Q 007400 451 IIPN-QEHHACLIELLAQAGCSDQLMNQLEKMP--YEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLL 527 (605)
Q Consensus 451 ~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 527 (605)
+.|+ ...+...+..|.+.|++++|++.|++.. .+.+..+|..++.++...|++++|+..++++++++|+++.+|..+
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l 87 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRK 87 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence 4444 3455566666666666666666666541 234566666677777777777777777777777777777777777
Q ss_pred HHHHHhcCCchHHHHHHHHHHh
Q 007400 528 SSIYSALGKGRLVEKVRQLINE 549 (605)
Q Consensus 528 ~~~~~~~g~~~~a~~~~~~~~~ 549 (605)
+.+|...|++++|++.|++..+
T Consensus 88 g~~~~~~~~~~~A~~~~~~al~ 109 (126)
T 4gco_A 88 AACLVAMREWSKAQRAYEDALQ 109 (126)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 7777777777777777776655
No 105
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.04 E-value=2.9e-09 Score=110.12 Aligned_cols=159 Identities=12% Similarity=0.063 Sum_probs=124.7
Q ss_pred cCChHHHHHHHHhcCCC--CCcchHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCcHHHHHHH
Q 007400 365 CGCLNDGRQVFDLTDNK--ENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKP-DKITLAVILNACTHSGLVQEGLTY 441 (605)
Q Consensus 365 ~g~~~~A~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~ 441 (605)
.|++++|.+.|++.... .+...|..+...+...|++++|.+.+++..+. .| +...+..+..++...|++++|...
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLAL--HPGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--STTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 47889999999876532 35678999999999999999999999999984 56 467899999999999999999999
Q ss_pred HHHchHhhCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHh
Q 007400 442 FESMTHDLGIIPN-QEHHACLIELLAQAGCSDQLMNQLEKMP--YEHDSYLWNALHGVCRIH---GNIDMGRKVVDQLID 515 (605)
Q Consensus 442 ~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~ 515 (605)
++++.+ ..|+ ...+..+..+|.+.|++++|.+.+++.. .+.+...+..++.++... |++++|.+.++++++
T Consensus 80 ~~~al~---~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~ 156 (568)
T 2vsy_A 80 LQQASD---AAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVA 156 (568)
T ss_dssp HHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred HHHHHh---cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence 999983 3454 7789999999999999999999998862 345688899999999999 999999999999999
Q ss_pred cCCCCCchHHHHH
Q 007400 516 QNPQSSATHGLLS 528 (605)
Q Consensus 516 ~~p~~~~~~~~l~ 528 (605)
..|.+...+..++
T Consensus 157 ~~p~~~~~~~~l~ 169 (568)
T 2vsy_A 157 QGVGAVEPFAFLS 169 (568)
T ss_dssp HTCCCSCHHHHTT
T ss_pred cCCcccChHHHhC
Confidence 9999888888776
No 106
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.03 E-value=1.8e-07 Score=93.84 Aligned_cols=363 Identities=12% Similarity=0.029 Sum_probs=211.6
Q ss_pred HHHHHHHHHccCChHHHHHHHhhcCC--CCceeHHHHHHHHHhcCC-hHHHHHHHHHHHh-CCCCC-ChhhHHHHHHHHh
Q 007400 122 YNNMLSGYANLGMMKHARNLFDNMAE--RDVVSWNTMIIGYAKSGA-VEEGLKFYKVLRR-FSISC-NEFSFAGILTICV 196 (605)
Q Consensus 122 ~~~li~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~-~~~a~~~~~~m~~-~~~~p-~~~~~~~ll~~~~ 196 (605)
|...+..+-. |+++.+..+|++... |++..|...+....+.++ .+.+..+|+.... -|..| +...|...+..+.
T Consensus 18 yer~l~~~P~-~~~e~~~~iferal~~~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~ 96 (493)
T 2uy1_A 18 MEHARRLYMS-KDYRSLESLFGRCLKKSYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEG 96 (493)
T ss_dssp HHHHHHHHHT-TCHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTS
T ss_pred HHHHHHHCCC-CCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHH
Confidence 3333333333 889999999998774 788888888777766663 4567778887765 34333 5667777777654
Q ss_pred c----cCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhcCCCCcchHHHHHHHHHhcCChHHHHH
Q 007400 197 K----LEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASK 272 (605)
Q Consensus 197 ~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~ 272 (605)
. .++.+.+..+|+..+......-...|...... .+..+...+..++.+.. +.+..|..
T Consensus 97 ~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~f-E~~~~~~~~~~~~~~~~-----------------~~y~~ar~ 158 (493)
T 2uy1_A 97 KIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENF-ELELNKITGKKIVGDTL-----------------PIFQSSFQ 158 (493)
T ss_dssp SCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHH-HHHHCHHHHHHHHHHHH-----------------HHHHHHHH
T ss_pred hchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHH-HHHhccccHHHHHHHHh-----------------HHHHHHHH
Confidence 3 35677888888888874221112222222221 11122222332222210 11122222
Q ss_pred HHhhCCC----CChhhHHHHHHHHHhCC--C-----hHHHHHHHHHHHHCCCCCChHHHHHHHHHHhcccchHHHHHHHH
Q 007400 273 LFNEMPE----KNPVSWTTLIAGYTRNG--L-----GQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHG 341 (605)
Q Consensus 273 ~~~~~~~----~~~~~~~~l~~~~~~~g--~-----~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 341 (605)
+++.+.. .+...|...+..-...+ - .+.+..+|+++... .+.+...|...+.-+...|+.+.|..+++
T Consensus 159 ~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~-~p~~~~lW~~ya~~~~~~~~~~~ar~i~e 237 (493)
T 2uy1_A 159 RYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDS-FYYAEEVYFFYSEYLIGIGQKEKAKKVVE 237 (493)
T ss_dssp HHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 2221111 13335555554432221 1 34567788887764 24456667667777778888999999999
Q ss_pred HHHHcCCCCChhHHHHHHHHHHhcCChHHH-HHHHHhcC--C-------C--CCcchHHHHHHHHHHcCCHHHHHHHHHH
Q 007400 342 FLIRTNFRSNTIVMSSLIDMYSKCGCLNDG-RQVFDLTD--N-------K--ENSMLWNTMISALTQHGYDEQAIRLFHD 409 (605)
Q Consensus 342 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A-~~~~~~~~--~-------~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 409 (605)
++... +.+...+.. |....+.++. ..+++... . . .....|...+..+.+.++.+.|..+|++
T Consensus 238 rAi~~--P~~~~l~~~----y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~ 311 (493)
T 2uy1_A 238 RGIEM--SDGMFLSLY----YGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIE 311 (493)
T ss_dssp HHHHH--CCSSHHHHH----HHHHTTCTHHHHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred HHHhC--CCcHHHHHH----HHhhcchhHHHHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 88887 444433332 2221111111 11222111 0 0 0124566677777777889999999998
Q ss_pred HHHCCCCCCHHHHHHHHHHHhc-cCcHHHHHHHHHHchHhhCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHH
Q 007400 410 MVRSSVKPDKITLAVILNACTH-SGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSY 488 (605)
Q Consensus 410 m~~~~~~p~~~~~~~l~~~~~~-~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 488 (605)
. .. ..++...|...+..-.. .++.+.|..+|+...+..+- ++..+...++...+.|+.+.|..+|+++. ....
T Consensus 312 A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~--~~~~~~~yid~e~~~~~~~~aR~l~er~~--k~~~ 385 (493)
T 2uy1_A 312 L-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPD--STLLKEEFFLFLLRIGDEENARALFKRLE--KTSR 385 (493)
T ss_dssp H-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHHTCHHHHHHHHHHSC--CBHH
T ss_pred h-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHH--HHHH
Confidence 8 32 12344444433322222 23689999999998854322 24556667787888999999999999985 4678
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 007400 489 LWNALHGVCRIHGNIDMGRKVVDQLIDQ 516 (605)
Q Consensus 489 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 516 (605)
.|...+..-...|+.+.+..+++++.+.
T Consensus 386 lw~~~~~fE~~~G~~~~~r~v~~~~~~~ 413 (493)
T 2uy1_A 386 MWDSMIEYEFMVGSMELFRELVDQKMDA 413 (493)
T ss_dssp HHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 8888888888889999999999988863
No 107
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.01 E-value=4e-09 Score=93.08 Aligned_cols=158 Identities=11% Similarity=0.022 Sum_probs=121.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHH----------------HHHHHhccCcHHHHHHHHHHchHhh
Q 007400 387 WNTMISALTQHGYDEQAIRLFHDMVRSSVKPD-KITLAV----------------ILNACTHSGLVQEGLTYFESMTHDL 449 (605)
Q Consensus 387 ~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~----------------l~~~~~~~g~~~~a~~~~~~~~~~~ 449 (605)
+......+...|++++|+..|++.++ ..|+ ...+.. +..++...|++++|+..|+++.
T Consensus 7 ~~~~g~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al--- 81 (208)
T 3urz_A 7 MLQKVSAAIEAGQNGQAVSYFRQTIA--LNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELL--- 81 (208)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH--HCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHH---
Confidence 34445567788888888888888887 4564 346666 8899999999999999999998
Q ss_pred CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHhcCCCCCchH
Q 007400 450 GIIPN-QEHHACLIELLAQAGCSDQLMNQLEKMP--YEHDSYLWNALHGVCRIHGN--IDMGRKVVDQLIDQNPQSSATH 524 (605)
Q Consensus 450 ~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~--~~~A~~~~~~~~~~~p~~~~~~ 524 (605)
...|+ ...+..+..+|...|++++|+..|++.. .+.+..+|..++.++...|+ .+.+...++++....| ....+
T Consensus 82 ~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~a~ 160 (208)
T 3urz_A 82 QKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTK-MQYAR 160 (208)
T ss_dssp HHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCH-HHHHH
T ss_pred HHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCc-hhHHH
Confidence 34565 7889999999999999999999999862 34578889999888866553 4566777777654443 23356
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHHhC
Q 007400 525 GLLSSIYSALGKGRLVEKVRQLINER 550 (605)
Q Consensus 525 ~~l~~~~~~~g~~~~a~~~~~~~~~~ 550 (605)
..++.++...|++++|+..|+++.+.
T Consensus 161 ~~~g~~~~~~~~~~~A~~~~~~al~l 186 (208)
T 3urz_A 161 YRDGLSKLFTTRYEKARNSLQKVILR 186 (208)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 67888999999999999999998764
No 108
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.99 E-value=1.3e-08 Score=82.33 Aligned_cols=131 Identities=15% Similarity=0.210 Sum_probs=105.2
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHchHhhCCCCCHHHHHHHHHHH
Q 007400 386 LWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELL 465 (605)
Q Consensus 386 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~ 465 (605)
.|..++..+...|++++|..+++++.+.+ +.+...+..+...+...|++++|..+++++... . +.+...+..++..+
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-~-~~~~~~~~~l~~~~ 79 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL-D-PRSAEAWYNLGNAY 79 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-C-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH-C-CCchHHHHHHHHHH
Confidence 46677788888889999999998888742 225667788888888889999999999888732 1 23466778888889
Q ss_pred HhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 007400 466 AQAGCSDQLMNQLEKMP--YEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQ 519 (605)
Q Consensus 466 ~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 519 (605)
...|++++|...++++. .+.+..++..++..+...|++++|...++++++..|+
T Consensus 80 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 80 YKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp HTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred HHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence 99999999999888762 3456778888999999999999999999999998885
No 109
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.98 E-value=2.8e-09 Score=85.17 Aligned_cols=114 Identities=5% Similarity=-0.030 Sum_probs=94.8
Q ss_pred CCCCH-HHHHHHHHHHhccCcHHHHHHHHHHchHhhCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHH
Q 007400 415 VKPDK-ITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPN-QEHHACLIELLAQAGCSDQLMNQLEKMP--YEHDSYLW 490 (605)
Q Consensus 415 ~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~ 490 (605)
+.|+. ..+......+.+.|++++|+..|+++. .+.|+ ...+..+..+|.+.|++++|++.+++.. .+.+...|
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al---~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~ 84 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAV---KRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGY 84 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH---HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH---HhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHH
Confidence 55643 467778888888899999999998887 23454 7788888889999999999999888762 34578899
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHH
Q 007400 491 NALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIY 531 (605)
Q Consensus 491 ~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 531 (605)
..++.++...|++++|+..|+++++++|++..++..|+.++
T Consensus 85 ~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~l 125 (126)
T 4gco_A 85 IRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNCL 125 (126)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence 99999999999999999999999999999999888887763
No 110
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.95 E-value=9.2e-09 Score=84.40 Aligned_cols=101 Identities=13% Similarity=-0.077 Sum_probs=88.0
Q ss_pred CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHH
Q 007400 450 GIIPN-QEHHACLIELLAQAGCSDQLMNQLEKMP--YEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGL 526 (605)
Q Consensus 450 ~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 526 (605)
...|+ ...+..+...+.+.|++++|...|++.. .+.+...|..++.++...|++++|+..|+++++++|+++..+..
T Consensus 12 ~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 91 (142)
T 2xcb_A 12 GLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFH 91 (142)
T ss_dssp TCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHH
Confidence 44554 5567778888889999999999998762 34578889999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCchHHHHHHHHHHhC
Q 007400 527 LSSIYSALGKGRLVEKVRQLINER 550 (605)
Q Consensus 527 l~~~~~~~g~~~~a~~~~~~~~~~ 550 (605)
++.+|...|++++|...++.+.+.
T Consensus 92 lg~~~~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 92 AAECHLQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh
Confidence 999999999999999999988764
No 111
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.94 E-value=1.7e-08 Score=106.16 Aligned_cols=168 Identities=8% Similarity=-0.027 Sum_probs=134.4
Q ss_pred hcccchHHHHHHHHHHH--------HcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCC--CCCcchHHHHHHHHHHc
Q 007400 328 ASIVSLKHGKQVHGFLI--------RTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDN--KENSMLWNTMISALTQH 397 (605)
Q Consensus 328 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~ 397 (605)
...|++++|.+.++++. +.. +.+...+..+...|...|++++|.+.|+.... +.+...|..+..++...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHc
Confidence 67788888888888887 333 55667788888899999999999999987653 23677889999999999
Q ss_pred CCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHchHhhCCCCC-HHHHHHHHHHHHhcCChHHHH
Q 007400 398 GYDEQAIRLFHDMVRSSVKP-DKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPN-QEHHACLIELLAQAGCSDQLM 475 (605)
Q Consensus 398 g~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~ 475 (605)
|++++|+..|++.++ +.| +...+..+..++...|++++ ...|+++. ...|+ ...+..+..++.+.|++++|+
T Consensus 481 g~~~~A~~~~~~al~--l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al---~~~P~~~~a~~~lg~~~~~~g~~~~A~ 554 (681)
T 2pzi_A 481 GDYDSATKHFTEVLD--TFPGELAPKLALAATAELAGNTDE-HKFYQTVW---STNDGVISAAFGLARARSAEGDRVGAV 554 (681)
T ss_dssp TCHHHHHHHHHHHHH--HSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHH---HHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred CCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHcCChHH-HHHHHHHH---HhCCchHHHHHHHHHHHHHcCCHHHHH
Confidence 999999999999998 456 45788899999999999999 99999988 33555 778899999999999999999
Q ss_pred HHHHhCC-CCCC-HHHHHHHHHHHHhcCC
Q 007400 476 NQLEKMP-YEHD-SYLWNALHGVCRIHGN 502 (605)
Q Consensus 476 ~~~~~~~-~~~~-~~~~~~l~~~~~~~g~ 502 (605)
+.|++.. ..|+ ...+..++.++...++
T Consensus 555 ~~~~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 555 RTLDEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HHHHhhcccCcccHHHHHHHHHHHHccCC
Confidence 9999974 4454 5677778777766555
No 112
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.92 E-value=8.6e-09 Score=97.17 Aligned_cols=220 Identities=10% Similarity=0.001 Sum_probs=147.8
Q ss_pred CCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhc-ccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHH
Q 007400 295 NGLGQKALELFTRMMILRIRPNQHTFSSCLCACAS-IVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQ 373 (605)
Q Consensus 295 ~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 373 (605)
.|++++|.+++++..+.. +.. +.. .++++.|...|..+ ...|...|++++|..
T Consensus 4 ~~~~~eA~~~~~~a~k~~-~~~----------~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~ 57 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYL-KTS----------FMKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKD 57 (307)
T ss_dssp HHHHHHHHHHHHHHHHHH-CCC----------SSSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHH
T ss_pred cchHHHHHHHHHHHHHHc-ccc----------ccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHH
Confidence 456677777777665421 110 111 35666666665543 345667777777777
Q ss_pred HHHhcCC----CCC----cchHHHHHHHHHHcCCHHHHHHHHHHHHHCC---CCCC--HHHHHHHHHHHhccCcHHHHHH
Q 007400 374 VFDLTDN----KEN----SMLWNTMISALTQHGYDEQAIRLFHDMVRSS---VKPD--KITLAVILNACTHSGLVQEGLT 440 (605)
Q Consensus 374 ~~~~~~~----~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~---~~p~--~~~~~~l~~~~~~~g~~~~a~~ 440 (605)
.|..... ..+ ..+|+.+...|...|++++|+..|++.++.- -.|. ..++..+..+|.. |++++|+.
T Consensus 58 ~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~ 136 (307)
T 2ifu_A 58 AYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVH 136 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHH
Confidence 7764321 111 3467778888999999999999998876521 1122 2477888888988 99999999
Q ss_pred HHHHchHhh---CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHhCC----CCCC----HHHHHHHHHHHHhcCCHHHHHH
Q 007400 441 YFESMTHDL---GIIPN-QEHHACLIELLAQAGCSDQLMNQLEKMP----YEHD----SYLWNALHGVCRIHGNIDMGRK 508 (605)
Q Consensus 441 ~~~~~~~~~---~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~----~~~~~~l~~~~~~~g~~~~A~~ 508 (605)
.|++...-. +..+. ..++..+..+|.+.|++++|+..+++.. ..++ ...+..++.++...|++++|..
T Consensus 137 ~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~ 216 (307)
T 2ifu_A 137 LYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQK 216 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 999887321 11111 4678889999999999999999998762 1122 2356667778888899999999
Q ss_pred HHHHHHhcCCCCCch-----HHHHHHHHHhcCCchHHHHH
Q 007400 509 VVDQLIDQNPQSSAT-----HGLLSSIYSALGKGRLVEKV 543 (605)
Q Consensus 509 ~~~~~~~~~p~~~~~-----~~~l~~~~~~~g~~~~a~~~ 543 (605)
.|++++ ..|..... ...++.++ ..|+.+.+.++
T Consensus 217 ~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~~ 254 (307)
T 2ifu_A 217 CVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLRV 254 (307)
T ss_dssp HHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHHH
T ss_pred HHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHHH
Confidence 999999 98865543 33455555 56776666553
No 113
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.91 E-value=3.5e-08 Score=87.37 Aligned_cols=128 Identities=9% Similarity=-0.100 Sum_probs=89.1
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHchHhhCCCC-CHHHHHHHHHH
Q 007400 386 LWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIP-NQEHHACLIEL 464 (605)
Q Consensus 386 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~ 464 (605)
.+..+...+...|++++|+..|++. +.|+...+..+..++...|++++|...++++... .| +...+..++.+
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---~~~~~~~~~~lg~~ 80 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINR---DKHLAVAYFQRGML 80 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHH----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CccchHHHHHHHHH
Confidence 3455666677778888888877765 3556777777777777888888888888777722 23 35677777777
Q ss_pred HHhcCChHHHHHHHHhCC--CCCC----------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 007400 465 LAQAGCSDQLMNQLEKMP--YEHD----------------SYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQS 520 (605)
Q Consensus 465 ~~~~g~~~~A~~~~~~~~--~~~~----------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 520 (605)
|...|++++|.+.+++.. .+.+ ..++..++.++...|++++|...|+++++..|++
T Consensus 81 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 154 (213)
T 1hh8_A 81 YYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP 154 (213)
T ss_dssp HHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred HHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccc
Confidence 777777777777776641 1112 2566677777777777777777777777777754
No 114
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.91 E-value=3.1e-08 Score=102.30 Aligned_cols=147 Identities=12% Similarity=0.021 Sum_probs=68.2
Q ss_pred CCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHchHhhCCCCC-HHHHHHHHHHHHhcCChHHHH
Q 007400 398 GYDEQAIRLFHDMVRSSVKP-DKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPN-QEHHACLIELLAQAGCSDQLM 475 (605)
Q Consensus 398 g~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~ 475 (605)
|++++|+..+++..+ ..| +...+..+..++...|++++|...+++.. ...|+ ...+..+..+|...|++++|.
T Consensus 3 g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al---~~~p~~~~~~~~lg~~~~~~g~~~~A~ 77 (568)
T 2vsy_A 3 ADGPRELLQLRAAVR--HRPQDFVAWLMLADAELGMGDTTAGEMAVQRGL---ALHPGHPEAVARLGRVRWTQQRHAEAA 77 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHH---TTSTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred ccHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH---HhCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 445555555555554 233 23455555555555555555555555555 23333 445555555555555555555
Q ss_pred HHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhc---CCchHHHHHHHHHHh
Q 007400 476 NQLEKMP--YEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSAL---GKGRLVEKVRQLINE 549 (605)
Q Consensus 476 ~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~---g~~~~a~~~~~~~~~ 549 (605)
+.+++.. .+.+...+..++.++...|++++|.+.|+++++..|++...+..++.++... |++++|.+.+++..+
T Consensus 78 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~ 156 (568)
T 2vsy_A 78 VLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVA 156 (568)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence 5555431 1234445555555555555555555555555555555555555555555555 555555555555433
No 115
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.90 E-value=7.1e-08 Score=85.19 Aligned_cols=173 Identities=9% Similarity=-0.043 Sum_probs=127.4
Q ss_pred HHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCCCCCcchHHHHHHHHHHcC----CHHHHHHHHHHHH
Q 007400 336 GKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHG----YDEQAIRLFHDMV 411 (605)
Q Consensus 336 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g----~~~~a~~~~~~m~ 411 (605)
|...|++..+.| ++..+..|...|...+++++|.+.|+......++..+..+...|.. + ++++|+.+|++..
T Consensus 5 A~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~ 80 (212)
T 3rjv_A 5 PGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIR-NPQQADYPQARQLAEKAV 80 (212)
T ss_dssp TTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHH
Confidence 444555555543 4555666666676777777777777765555566777777777776 5 8889999998887
Q ss_pred HCCCCCCHHHHHHHHHHHhc----cCcHHHHHHHHHHchHhhCCCCC---HHHHHHHHHHHHh----cCChHHHHHHHHh
Q 007400 412 RSSVKPDKITLAVILNACTH----SGLVQEGLTYFESMTHDLGIIPN---QEHHACLIELLAQ----AGCSDQLMNQLEK 480 (605)
Q Consensus 412 ~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~p~---~~~~~~l~~~~~~----~g~~~~A~~~~~~ 480 (605)
+.| +...+..+...|.. .+++++|..+|++.. ...|+ +..+..|..+|.. .+++++|...|++
T Consensus 81 ~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~---~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~ 154 (212)
T 3rjv_A 81 EAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAA---RDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKG 154 (212)
T ss_dssp HTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHT---SSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHH
T ss_pred HCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHH---HcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 754 56777788888877 788999999999887 33443 6788888888888 7889999999988
Q ss_pred CC-CCCCHHHHHHHHHHHHhc-C-----CHHHHHHHHHHHHhcCC
Q 007400 481 MP-YEHDSYLWNALHGVCRIH-G-----NIDMGRKVVDQLIDQNP 518 (605)
Q Consensus 481 ~~-~~~~~~~~~~l~~~~~~~-g-----~~~~A~~~~~~~~~~~p 518 (605)
.. ...+...+..|+..|... | ++++|...|+++.+...
T Consensus 155 A~~~~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 155 SSSLSRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHTSCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHcCCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 63 235666777888887653 3 89999999999988743
No 116
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.89 E-value=1.1e-08 Score=96.43 Aligned_cols=197 Identities=7% Similarity=-0.074 Sum_probs=149.4
Q ss_pred cccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCCCCCcchHHHHHHHHHHcCCHHHHHHHHH
Q 007400 329 SIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFH 408 (605)
Q Consensus 329 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 408 (605)
..|++++|.+++++..+... .. .+...++++.|...|... +..|...|++++|...|.
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~-~~---------~~~~~~~~~~A~~~~~~a------------~~~~~~~g~~~~A~~~~~ 60 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLK-TS---------FMKWKPDYDSAASEYAKA------------AVAFKNAKQLEQAKDAYL 60 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHC-CC---------SSSCSCCHHHHHHHHHHH------------HHHHHHTTCHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHcc-cc---------ccCCCCCHHHHHHHHHHH------------HHHHHHcCCHHHHHHHHH
Confidence 46788899999988876431 11 011147888888887643 567888999999999999
Q ss_pred HHHHCCC---CC-C-HHHHHHHHHHHhccCcHHHHHHHHHHchHhhCC--CCC--HHHHHHHHHHHHhcCChHHHHHHHH
Q 007400 409 DMVRSSV---KP-D-KITLAVILNACTHSGLVQEGLTYFESMTHDLGI--IPN--QEHHACLIELLAQAGCSDQLMNQLE 479 (605)
Q Consensus 409 ~m~~~~~---~p-~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~p~--~~~~~~l~~~~~~~g~~~~A~~~~~ 479 (605)
+..+... .+ . ..+|..+..+|...|++++|+..|++...-..- .|. ..++..+..+|.. |++++|+..++
T Consensus 61 ~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~ 139 (307)
T 2ifu_A 61 QEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQ 139 (307)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHH
Confidence 8775311 11 1 247888899999999999999999987632111 122 4678889999988 99999999998
Q ss_pred hCC----CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC------chHHHHHHHHHhcCCchHHHHHHH
Q 007400 480 KMP----YEHD----SYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSS------ATHGLLSSIYSALGKGRLVEKVRQ 545 (605)
Q Consensus 480 ~~~----~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~------~~~~~l~~~~~~~g~~~~a~~~~~ 545 (605)
+.. ...+ ..++..++..+...|++++|+..|+++++..|.+. ..+..++.++...|++++|...++
T Consensus 140 ~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~ 219 (307)
T 2ifu_A 140 QAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVR 219 (307)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 752 1111 45788899999999999999999999999866443 366778889999999999999999
Q ss_pred HHH
Q 007400 546 LIN 548 (605)
Q Consensus 546 ~~~ 548 (605)
+..
T Consensus 220 ~al 222 (307)
T 2ifu_A 220 ESY 222 (307)
T ss_dssp HHT
T ss_pred HHh
Confidence 887
No 117
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.87 E-value=6.7e-08 Score=86.35 Aligned_cols=186 Identities=12% Similarity=0.003 Sum_probs=132.4
Q ss_pred ChHHHHHHHHHHhcccchHHHHHHHHHHHHcCCCC--ChhHHHHHHHHHHhcCChHHHHHHHHhcCC-CCCcc----hHH
Q 007400 316 NQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRS--NTIVMSSLIDMYSKCGCLNDGRQVFDLTDN-KENSM----LWN 388 (605)
Q Consensus 316 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~----~~~ 388 (605)
+...+..+...+...|++++|...|+.+.+..... ....+..+..+|.+.|++++|+..|+.+.. .|+.. ++.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 34456667778899999999999999999864221 235778889999999999999999998653 23322 455
Q ss_pred HHHHHHHH------------------cCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCcHHHHHHHHHHchHhh
Q 007400 389 TMISALTQ------------------HGYDEQAIRLFHDMVRSSVKPDKI-TLAVILNACTHSGLVQEGLTYFESMTHDL 449 (605)
Q Consensus 389 ~l~~~~~~------------------~g~~~~a~~~~~~m~~~~~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 449 (605)
.+..++.. .|++++|+..|+++++ ..|+.. ........ ..+...+.
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~--~~P~~~~a~~a~~~l----------~~~~~~~~--- 147 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVR--GYPNSQYTTDATKRL----------VFLKDRLA--- 147 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHT--TCTTCTTHHHHHHHH----------HHHHHHHH---
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHH--HCcCChhHHHHHHHH----------HHHHHHHH---
Confidence 55555554 5789999999999998 456543 22221110 01111111
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHhCC-CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc
Q 007400 450 GIIPNQEHHACLIELLAQAGCSDQLMNQLEKMP-YEHD----SYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSA 522 (605)
Q Consensus 450 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 522 (605)
.....+...|.+.|++++|+..|+++. ..|+ ...+..++.++.+.|+.++|.+.++++....|++..
T Consensus 148 ------~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~ 219 (225)
T 2yhc_A 148 ------KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLE 219 (225)
T ss_dssp ------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCC
T ss_pred ------HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchh
Confidence 122356788999999999999998862 2232 256788899999999999999999999999887654
No 118
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.85 E-value=3.6e-07 Score=85.40 Aligned_cols=161 Identities=6% Similarity=-0.038 Sum_probs=120.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCC-CCCHH----HHHHHHHHHhccCcHHHHHHHHHHchHhhCCCCC----HHHHH
Q 007400 389 TMISALTQHGYDEQAIRLFHDMVRSSV-KPDKI----TLAVILNACTHSGLVQEGLTYFESMTHDLGIIPN----QEHHA 459 (605)
Q Consensus 389 ~l~~~~~~~g~~~~a~~~~~~m~~~~~-~p~~~----~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~ 459 (605)
..+..+...|++++|..++++..+... .|+.. .+..+...+...|++++|+..++++.....-.++ ..+++
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 346677888999999999998887421 12211 3334666777888999999999998842111222 33688
Q ss_pred HHHHHHHhcCChHHHHHHHHhCC-----CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC------CchH
Q 007400 460 CLIELLAQAGCSDQLMNQLEKMP-----YEHD----SYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQS------SATH 524 (605)
Q Consensus 460 ~l~~~~~~~g~~~~A~~~~~~~~-----~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~------~~~~ 524 (605)
.++.+|...|++++|...++++. .+.+ ..++..++..|...|++++|...++++++..+.. +.++
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~ 239 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 89999999999999998887752 1112 3477889999999999999999999999874322 5688
Q ss_pred HHHHHHHHhcCC-chHHHHHHHHHHh
Q 007400 525 GLLSSIYSALGK-GRLVEKVRQLINE 549 (605)
Q Consensus 525 ~~l~~~~~~~g~-~~~a~~~~~~~~~ 549 (605)
..++.+|.+.|+ +++|.+.+++...
T Consensus 240 ~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 240 YQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 899999999995 5999999887753
No 119
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.84 E-value=1.6e-06 Score=80.21 Aligned_cols=225 Identities=10% Similarity=0.041 Sum_probs=145.7
Q ss_pred CChHHHHHHHHHHHHCCCCCCh-HHHHHHHHHHhccc--chHHHHHHHHHHHHcCCCCChhHHHHHHHHH----Hhc---
Q 007400 296 GLGQKALELFTRMMILRIRPNQ-HTFSSCLCACASIV--SLKHGKQVHGFLIRTNFRSNTIVMSSLIDMY----SKC--- 365 (605)
Q Consensus 296 g~~~~a~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~--- 365 (605)
...++|+.+++.++.. .|+. ..++.--..+...+ +++++...+..++..+ +-+..+|+.-..++ ...
T Consensus 47 e~s~~aL~~t~~~L~~--nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~~~ 123 (306)
T 3dra_A 47 EYSERALHITELGINE--LASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNNND 123 (306)
T ss_dssp CCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTTTC
T ss_pred CCCHHHHHHHHHHHHH--CcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhcccc
Confidence 3446788888888774 4444 34555555666666 7888888888887765 44445555443333 444
Q ss_pred CChHHHHHHHHhcCC--CCCcchHHHHHHHHHHcCCHH--HHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCc------
Q 007400 366 GCLNDGRQVFDLTDN--KENSMLWNTMISALTQHGYDE--QAIRLFHDMVRSSVKP-DKITLAVILNACTHSGL------ 434 (605)
Q Consensus 366 g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~--~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~------ 434 (605)
+++++++++++.+.. +-+..+|+-..-.+...|.++ ++++.++++++. .| |...|+.-...+...+.
T Consensus 124 ~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~--d~~N~sAW~~R~~ll~~l~~~~~~~~ 201 (306)
T 3dra_A 124 FDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDT--DLKNNSAWSHRFFLLFSKKHLATDNT 201 (306)
T ss_dssp CCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHSSGGGCCHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccccchhhh
Confidence 677777777776542 126666776666677777777 888888888874 34 55667666666666665
Q ss_pred HHHHHHHHHHchHhhCCCCC-HHHHHHHHHHHHhcCChHH-HHHHHHhCCC-----CCCHHHHHHHHHHHHhcCCHHHHH
Q 007400 435 VQEGLTYFESMTHDLGIIPN-QEHHACLIELLAQAGCSDQ-LMNQLEKMPY-----EHDSYLWNALHGVCRIHGNIDMGR 507 (605)
Q Consensus 435 ~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~-----~~~~~~~~~l~~~~~~~g~~~~A~ 507 (605)
++++++.++++. ...|+ ...|+.+..++.+.|+... +.++.+++.. ..++..+..++.++.+.|+.++|.
T Consensus 202 ~~eEl~~~~~aI---~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~ 278 (306)
T 3dra_A 202 IDEELNYVKDKI---VKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESR 278 (306)
T ss_dssp HHHHHHHHHHHH---HHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHH---HhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHH
Confidence 777777777777 23444 6677777777777776443 4445555421 345667777777777777888888
Q ss_pred HHHHHHHh-cCCCCCchHHHHH
Q 007400 508 KVVDQLID-QNPQSSATHGLLS 528 (605)
Q Consensus 508 ~~~~~~~~-~~p~~~~~~~~l~ 528 (605)
++++.+.+ .+|.....|...+
T Consensus 279 ~~~~~l~~~~Dpir~~yW~~~~ 300 (306)
T 3dra_A 279 TVYDLLKSKYNPIRSNFWDYQI 300 (306)
T ss_dssp HHHHHHHHTTCGGGHHHHHHHH
T ss_pred HHHHHHHhccChHHHHHHHHHH
Confidence 88888776 5776665555444
No 120
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.83 E-value=3e-07 Score=85.10 Aligned_cols=213 Identities=15% Similarity=0.119 Sum_probs=171.4
Q ss_pred cchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcC--ChHHHHHHHHhcCC--CCCcchHHHHHHHH----HHc---CC
Q 007400 331 VSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCG--CLNDGRQVFDLTDN--KENSMLWNTMISAL----TQH---GY 399 (605)
Q Consensus 331 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~--~~~~~~~~~l~~~~----~~~---g~ 399 (605)
...++|...+..++..+ +-+..+|+.-..++...| +++++++.++.+.. +-+..+|+--...+ ... ++
T Consensus 47 e~s~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~ 125 (306)
T 3dra_A 47 EYSERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFD 125 (306)
T ss_dssp CCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCC
T ss_pred CCCHHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCC
Confidence 34468999999999887 666778888888888888 99999999997652 22566777665555 555 78
Q ss_pred HHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCcHH--HHHHHHHHchHhhCCCC-CHHHHHHHHHHHHhcCC-----
Q 007400 400 DEQAIRLFHDMVRSSVKP-DKITLAVILNACTHSGLVQ--EGLTYFESMTHDLGIIP-NQEHHACLIELLAQAGC----- 470 (605)
Q Consensus 400 ~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~--~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~----- 470 (605)
+++++++++++.+. .| |..+|+.-..++...|.++ +++.+++++.. ..| |...|+.-..++.+.|.
T Consensus 126 ~~~EL~~~~~~l~~--~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~---~d~~N~sAW~~R~~ll~~l~~~~~~~ 200 (306)
T 3dra_A 126 PYREFDILEAMLSS--DPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVID---TDLKNNSAWSHRFFLLFSKKHLATDN 200 (306)
T ss_dssp THHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHSSGGGCCHH
T ss_pred HHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHhccccchhh
Confidence 99999999999984 45 6778888888888888888 99999999983 244 46778777777777776
Q ss_pred -hHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHhcC---CCCCchHHHHHHHHHhcCCchHHHHH
Q 007400 471 -SDQLMNQLEKM--PYEHDSYLWNALHGVCRIHGNI-DMGRKVVDQLIDQN---PQSSATHGLLSSIYSALGKGRLVEKV 543 (605)
Q Consensus 471 -~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~---p~~~~~~~~l~~~~~~~g~~~~a~~~ 543 (605)
++++++.++++ ..+.|...|+.+...+.+.|+. +....++++++++. |.++.++..++++|.+.|+.++|.++
T Consensus 201 ~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~ 280 (306)
T 3dra_A 201 TIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTV 280 (306)
T ss_dssp HHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHH
Confidence 88899888875 2457899999999999888874 44667888888775 77889999999999999999999999
Q ss_pred HHHHHh
Q 007400 544 RQLINE 549 (605)
Q Consensus 544 ~~~~~~ 549 (605)
++.+.+
T Consensus 281 ~~~l~~ 286 (306)
T 3dra_A 281 YDLLKS 286 (306)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 999875
No 121
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.82 E-value=1.4e-07 Score=88.28 Aligned_cols=163 Identities=6% Similarity=-0.051 Sum_probs=121.7
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH------HHHHHHHHHHhccCcHHHHHHHHHHchHhhC--CCCC--H
Q 007400 386 LWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDK------ITLAVILNACTHSGLVQEGLTYFESMTHDLG--IIPN--Q 455 (605)
Q Consensus 386 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~p~--~ 455 (605)
.+...+..+...|++++|.+.+++..+.... .. ..+..+...+...|++++|...++++..... ..+. .
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEY-HPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCC-CHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccC-ChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 4455667788889999999999888774322 22 2344456667788899999999988762211 1122 4
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHhCC-----CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC------C
Q 007400 456 EHHACLIELLAQAGCSDQLMNQLEKMP-----YEHD----SYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQ------S 520 (605)
Q Consensus 456 ~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~------~ 520 (605)
.+++.++..|...|++++|...+++.. .+.+ ..++..++..|...|++++|...++++++..++ -
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~ 235 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 578889999999999999999887752 1122 257888999999999999999999999987432 1
Q ss_pred CchHHHHHHHHHhcCCchHH-HHHHHHHHh
Q 007400 521 SATHGLLSSIYSALGKGRLV-EKVRQLINE 549 (605)
Q Consensus 521 ~~~~~~l~~~~~~~g~~~~a-~~~~~~~~~ 549 (605)
..++..++.+|.+.|++++| ...+++...
T Consensus 236 ~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 236 GQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 56788999999999999999 777877653
No 122
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.82 E-value=2.5e-08 Score=85.26 Aligned_cols=157 Identities=11% Similarity=0.039 Sum_probs=103.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhcCC--CCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-Hh
Q 007400 354 VMSSLIDMYSKCGCLNDGRQVFDLTDN--KENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNA-CT 430 (605)
Q Consensus 354 ~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~-~~ 430 (605)
.+..+...+...|++++|...|+.... +.+...+..+...+...|++++|+..+++.... .|+......+... +.
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~~ 85 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLE--YQDNSYKSLIAKLELH 85 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG--GCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc--cCChHHHHHHHHHHHH
Confidence 344556667777888888888877653 235667777777888888888888888777663 3443332222211 11
Q ss_pred ccCcHHHHHHHHHHchHhhCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC---CHHHHHHHHHHHHhcCCHHH
Q 007400 431 HSGLVQEGLTYFESMTHDLGIIPN-QEHHACLIELLAQAGCSDQLMNQLEKM-PYEH---DSYLWNALHGVCRIHGNIDM 505 (605)
Q Consensus 431 ~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~---~~~~~~~l~~~~~~~g~~~~ 505 (605)
..+....|...+++.. ...|+ ...+..+..++...|++++|...++++ ...| +...+..++.++...|+.++
T Consensus 86 ~~~~~~~a~~~~~~al---~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~ 162 (176)
T 2r5s_A 86 QQAAESPELKRLEQEL---AANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNA 162 (176)
T ss_dssp HHHTSCHHHHHHHHHH---HHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCH
T ss_pred hhcccchHHHHHHHHH---HhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCc
Confidence 1122234677777776 23454 677778888888888888888888775 2333 25577788888888888888
Q ss_pred HHHHHHHHHh
Q 007400 506 GRKVVDQLID 515 (605)
Q Consensus 506 A~~~~~~~~~ 515 (605)
|...|++++.
T Consensus 163 A~~~y~~al~ 172 (176)
T 2r5s_A 163 IASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8888887764
No 123
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.81 E-value=4.3e-08 Score=78.41 Aligned_cols=96 Identities=6% Similarity=-0.096 Sum_probs=82.3
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 007400 455 QEHHACLIELLAQAGCSDQLMNQLEKMP--YEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYS 532 (605)
Q Consensus 455 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 532 (605)
...+..++..+.+.|++++|+..|++.. .+.+...|..++.++...|++++|+..++++++.+|+++..+..++.++.
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 4566677778888888888888887752 34568888899999999999999999999999999999999999999999
Q ss_pred hcCCchHHHHHHHHHHhC
Q 007400 533 ALGKGRLVEKVRQLINER 550 (605)
Q Consensus 533 ~~g~~~~a~~~~~~~~~~ 550 (605)
..|++++|...+++..+.
T Consensus 84 ~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 84 AVKEYASALETLDAARTK 101 (126)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHh
Confidence 999999999999988764
No 124
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.81 E-value=6.2e-09 Score=96.60 Aligned_cols=191 Identities=7% Similarity=-0.021 Sum_probs=121.4
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhcC--CCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHH
Q 007400 352 TIVMSSLIDMYSKCGCLNDGRQVFDLTD--NKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKP-DKITLAVILNA 428 (605)
Q Consensus 352 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~ 428 (605)
...+..+...+...|++++|...|+... .+.+...|..+...+...|++++|+..+++.++ +.| +...+..+..+
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~lg~~ 81 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALE--LDGQSVKAHFFLGQC 81 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT--SCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCCCCHHHHHHHHHH
Confidence 3445556666667777777777776543 122566777777778888888888888888777 345 45577777788
Q ss_pred HhccCcHHHHHHHHHHchHhhCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 007400 429 CTHSGLVQEGLTYFESMTHDLGIIPNQ-EHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGR 507 (605)
Q Consensus 429 ~~~~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 507 (605)
+...|++++|...|+++... .|+. ..+...+....+..+...... ......+.+..+...+... ..|++++|+
T Consensus 82 ~~~~g~~~~A~~~~~~al~l---~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~l~~l--~~~~~~~A~ 155 (281)
T 2c2l_A 82 QLEMESYDEAIANLQRAYSL---AKEQRLNFGDDIPSALRIAKKKRWNS-IEERRIHQESELHSYLTRL--IAAEREREL 155 (281)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---HHHTTCCCCSHHHHHHHHHHHHHHHH-HHHTCCCCCCHHHHHHHHH--HHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh---CccchhhHHHHHHHHHHHHHHHHHHH-HHHHHHhhhHHHHHHHHHH--HHHHHHHHH
Confidence 88888888888888777632 2211 011111111111111111111 2222334455554444333 268999999
Q ss_pred HHHHHHHhcCCCCCchHHHHHHHHHhc-CCchHHHHHHHHHHhC
Q 007400 508 KVVDQLIDQNPQSSATHGLLSSIYSAL-GKGRLVEKVRQLINER 550 (605)
Q Consensus 508 ~~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~ 550 (605)
+.++++++..|++......+...+.+. +.+++|.++|+++.+.
T Consensus 156 ~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 156 EECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp TTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 999999999998887777888878776 7789999999888653
No 125
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.80 E-value=1.4e-08 Score=87.07 Aligned_cols=117 Identities=15% Similarity=0.056 Sum_probs=74.7
Q ss_pred ccCcHHHHHHHHHHchHhhCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHH-HHhcCCH--H
Q 007400 431 HSGLVQEGLTYFESMTHDLGIIP-NQEHHACLIELLAQAGCSDQLMNQLEKMP--YEHDSYLWNALHGV-CRIHGNI--D 504 (605)
Q Consensus 431 ~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~-~~~~g~~--~ 504 (605)
..|++++|...+++.... .| +...+..++.+|...|++++|...+++.. .+.+...+..++.+ +...|++ +
T Consensus 22 ~~~~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRA---NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp -----CCCCHHHHHHHHH---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCH
T ss_pred hccCHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchH
Confidence 445556666666655522 22 34556666666666666666666666541 12455666666666 6677777 7
Q ss_pred HHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 007400 505 MGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINER 550 (605)
Q Consensus 505 ~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 550 (605)
+|...++++++..|++...+..++.+|...|++++|...++++.+.
T Consensus 99 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 99 QTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 7888888888777777777777888888888888888877777654
No 126
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.80 E-value=1.3e-07 Score=87.99 Aligned_cols=161 Identities=12% Similarity=0.079 Sum_probs=96.0
Q ss_pred hHHHHHHHHHHhcccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCCC-CCcchHHHH-HHHH
Q 007400 317 QHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNK-ENSMLWNTM-ISAL 394 (605)
Q Consensus 317 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~l-~~~~ 394 (605)
...+..+...+...|++++|...++++.+.. +.+...+..+..++...|++++|...++.+... |+....... ...+
T Consensus 117 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l 195 (287)
T 3qou_A 117 EELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIEL 195 (287)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHHH
Confidence 3444555556666677777777777666654 445566667777777777777777777766532 333322222 2234
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHchHhhCCCCCHHHHHHHHHHHHhcCChHH
Q 007400 395 TQHGYDEQAIRLFHDMVRSSVKP-DKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQ 473 (605)
Q Consensus 395 ~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 473 (605)
...++.++|+..+++.+.. .| +...+..+..++...|++++|...|+++.+...-..+...+..++..|...|+.++
T Consensus 196 ~~~~~~~~a~~~l~~al~~--~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~ 273 (287)
T 3qou_A 196 LXQAADTPEIQQLQQQVAE--NPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDA 273 (287)
T ss_dssp HHHHTSCHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCH
T ss_pred HhhcccCccHHHHHHHHhc--CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCc
Confidence 5566666677777777663 44 34566677777777777777777777776321111124455666666666666666
Q ss_pred HHHHHHh
Q 007400 474 LMNQLEK 480 (605)
Q Consensus 474 A~~~~~~ 480 (605)
|...+++
T Consensus 274 a~~~~r~ 280 (287)
T 3qou_A 274 LASXYRR 280 (287)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6555543
No 127
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.80 E-value=5.5e-08 Score=82.04 Aligned_cols=126 Identities=6% Similarity=-0.040 Sum_probs=93.7
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHchHhhCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHH
Q 007400 421 TLAVILNACTHSGLVQEGLTYFESMTHDLGIIP-NQEHHACLIELLAQAGCSDQLMNQLEKMP--YEHDSYLWNALHGVC 497 (605)
Q Consensus 421 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~ 497 (605)
.+..+...+...|+++.|...|++.... .| +...+..++.++...|++++|...+++.. .+.+...+..++.++
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~---~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIEL---NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 4555556666667777777777766622 23 35666677777777777777777776642 245677888899999
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCchHHHHHH--HHHhcCCchHHHHHHHHHHh
Q 007400 498 RIHGNIDMGRKVVDQLIDQNPQSSATHGLLSS--IYSALGKGRLVEKVRQLINE 549 (605)
Q Consensus 498 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~--~~~~~g~~~~a~~~~~~~~~ 549 (605)
...|++++|...++++++..|.+...+..+.. .+...|++++|...++...+
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 99999999999999999999988888855444 48888999999999887643
No 128
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.79 E-value=6.1e-08 Score=78.20 Aligned_cols=113 Identities=7% Similarity=-0.038 Sum_probs=75.4
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHchHhhCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHH
Q 007400 421 TLAVILNACTHSGLVQEGLTYFESMTHDLGIIP-NQEHHACLIELLAQAGCSDQLMNQLEKMP--YEHDSYLWNALHGVC 497 (605)
Q Consensus 421 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~ 497 (605)
.+..+...+...|++++|...|+++. ...| +...+..+..++...|++++|...+++.. .+.+...+..++.++
T Consensus 18 ~~~~~~~~~~~~~~~~~A~~~~~~al---~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 94 (133)
T 2lni_A 18 MVKNKGNECFQKGDYPQAMKHYTEAI---KRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAAL 94 (133)
T ss_dssp HHHHHHHHHHHTTCSHHHHHHHHHHH---TTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH---HcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 44445555555555555555555554 2223 24455555555555555555555555431 234567788888889
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCC
Q 007400 498 RIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGK 536 (605)
Q Consensus 498 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 536 (605)
...|++++|...++++++..|.+...+..++.++...|+
T Consensus 95 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 95 EAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 999999999999999999999888999999999887764
No 129
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.78 E-value=2e-07 Score=82.37 Aligned_cols=123 Identities=8% Similarity=-0.060 Sum_probs=67.2
Q ss_pred HHHHHHHhccCcHHHHHHHHHHchHhhCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhc
Q 007400 423 AVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMP--YEHDSYLWNALHGVCRIH 500 (605)
Q Consensus 423 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~ 500 (605)
..+...+...|++++|...|+++. .|+...+..++.+|.+.|++++|...+++.. .+.+...+..++.++...
T Consensus 10 ~~~g~~~~~~~~~~~A~~~~~~a~-----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~ 84 (213)
T 1hh8_A 10 WNEGVLAADKKDWKGALDAFSAVQ-----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQT 84 (213)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTSS-----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHc-----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHc
Confidence 334444555555556555555442 3345555555555555666666555555431 223455555555555555
Q ss_pred CCHHHHHHHHHHHHhcCCCCC----------------chHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 007400 501 GNIDMGRKVVDQLIDQNPQSS----------------ATHGLLSSIYSALGKGRLVEKVRQLINER 550 (605)
Q Consensus 501 g~~~~A~~~~~~~~~~~p~~~----------------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 550 (605)
|++++|...|+++++..|.+. ..+..++.+|...|++++|...++++.+.
T Consensus 85 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 85 EKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp TCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred ccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 666666666666655555544 55555555666666666665555555443
No 130
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.77 E-value=9.2e-08 Score=86.31 Aligned_cols=135 Identities=9% Similarity=-0.022 Sum_probs=97.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHchHhhCCCCC--HHHHHHHHHHH
Q 007400 388 NTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPN--QEHHACLIELL 465 (605)
Q Consensus 388 ~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~l~~~~ 465 (605)
..+...+...|++++|.++|+.+... .|+......+...+.+.+++++|+..|+... ... .|. ...+..+..++
T Consensus 106 LayA~~L~~~g~y~eA~~~l~~~~~~--~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~-~~~-d~~~~~~a~~~LG~al 181 (282)
T 4f3v_A 106 MGFAACEAAQGNYADAMEALEAAPVA--GSEHLVAWMKAVVYGAAERWTDVIDQVKSAG-KWP-DKFLAGAAGVAHGVAA 181 (282)
T ss_dssp HHHHHHHHHHTCHHHHHHHHTSSCCT--TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGG-GCS-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHcCCHHHHHHHHHHhh-ccC-CcccHHHHHHHHHHHH
Confidence 34566677888888888888877763 4554455555667788888888888887655 211 221 34677888888
Q ss_pred HhcCChHHHHHHHHhCCCC---C--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHH
Q 007400 466 AQAGCSDQLMNQLEKMPYE---H--DSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLL 527 (605)
Q Consensus 466 ~~~g~~~~A~~~~~~~~~~---~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 527 (605)
.+.|++++|+..|++.... | ....+..++.++.+.|+.++|...|++++..+|+ ......|
T Consensus 182 ~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL 247 (282)
T 4f3v_A 182 ANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAAL 247 (282)
T ss_dssp HHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHH
T ss_pred HHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHH
Confidence 8999999999888876211 3 3346777888889999999999999999999996 5554444
No 131
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.76 E-value=6.9e-08 Score=77.51 Aligned_cols=117 Identities=8% Similarity=-0.041 Sum_probs=88.5
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHchHhhCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHH
Q 007400 420 ITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMP--YEHDSYLWNALHGVC 497 (605)
Q Consensus 420 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~ 497 (605)
..+..+...+...|+++.|...++++... .+.+...+..++.++...|++++|...+++.. .+.+...+..++.++
T Consensus 13 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 13 ERLKTEGNEQMKVENFEAAVHFYGKAIEL--NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHH
Confidence 45566666666777777777777776622 12235666777777777777777777776642 234577888889999
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCch
Q 007400 498 RIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGR 538 (605)
Q Consensus 498 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 538 (605)
...|++++|...++++++..|++...+..++.++...|+++
T Consensus 91 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~ 131 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREAP 131 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTCC
T ss_pred HHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999888763
No 132
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.76 E-value=1.9e-05 Score=79.17 Aligned_cols=366 Identities=10% Similarity=0.025 Sum_probs=186.1
Q ss_pred CChHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHhhhcCC-hhHHHHHHHHHHHh-CCCCCchhhHH
Q 007400 15 LPNNCLIQSFLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKS-LKLGKRVHLHLKLT-QRKTPTTFLSN 92 (605)
Q Consensus 15 ~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~-~~~~~~~~~~~ 92 (605)
-.-..++..++...-.|+++.+..+|++.... .|+...|...+....+.++ .+....+|+..+.. |..++....+.
T Consensus 12 ~~aR~vyer~l~~~P~~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~ 89 (493)
T 2uy1_A 12 SSPSAIMEHARRLYMSKDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYK 89 (493)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHH
T ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHH
Confidence 34445555566555569999999999999884 4788888888887776653 45677788877765 44454444777
Q ss_pred HHHHHHH----hcCChhHHHHHhccCCC-CC--c-hHHHHHHHHHHcc-------------CChHHHHHHHhhcCC----
Q 007400 93 HLISMYF----KCGSDVDARKVFDKIPV-KN--L-FSYNNMLSGYANL-------------GMMKHARNLFDNMAE---- 147 (605)
Q Consensus 93 ~l~~~~~----~~g~~~~a~~~~~~~~~-~~--~-~~~~~li~~~~~~-------------~~~~~A~~~~~~~~~---- 147 (605)
..+..+. ..|+.+.+..+|++... |. . ..|......-... +.+..|..+++.+..
T Consensus 90 ~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~ 169 (493)
T 2uy1_A 90 EYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRG 169 (493)
T ss_dssp HHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhh
Confidence 7776543 24567788888888754 21 1 1222221111000 111122222221110
Q ss_pred CCceeHHHHHHHHHhcC--C-----hHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCCh
Q 007400 148 RDVVSWNTMIIGYAKSG--A-----VEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNV 220 (605)
Q Consensus 148 ~~~~~~~~li~~~~~~~--~-----~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 220 (605)
.+...|...+..-...+ - .+.+..+|+++... .+-+...|...+..+.+.|+.+.|..+++..+.. +.+.
T Consensus 170 ~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~-~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~ 246 (493)
T 2uy1_A 170 WSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDS-FYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGM 246 (493)
T ss_dssp CSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSS
T ss_pred ccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcH
Confidence 11122322222211110 0 12234445444432 1223344444444444455555555555555544 1121
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHhhcCCCCcchHHHHHHHHHhcCChHHHHHHHhhCCCCChhhHHHHHHHHHhCCChHH
Q 007400 221 VISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQK 300 (605)
Q Consensus 221 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 300 (605)
..+. .|....+.++. ++ .+...+.. ...+.+.. .........|...+....+.++.+.
T Consensus 247 ~l~~----~y~~~~e~~~~---~~-----------~l~~~~~~-~~~~~~~~---~~~~~~~~lw~~y~~~~~r~~~~~~ 304 (493)
T 2uy1_A 247 FLSL----YYGLVMDEEAV---YG-----------DLKRKYSM-GEAESAEK---VFSKELDLLRINHLNYVLKKRGLEL 304 (493)
T ss_dssp HHHH----HHHHHTTCTHH---HH-----------HHHHHTC--------------CHHHHHHHHHHHHHHHHHHHCHHH
T ss_pred HHHH----HHHhhcchhHH---HH-----------HHHHHHHh-hccchhhh---hcccccHHHHHHHHHHHHHcCCHHH
Confidence 1111 11111111100 00 00000000 00000000 0000122456666777767778888
Q ss_pred HHHHHHHHHHCCCCCChHHHHHHHHHHhccc-chHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcC
Q 007400 301 ALELFTRMMILRIRPNQHTFSSCLCACASIV-SLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTD 379 (605)
Q Consensus 301 a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 379 (605)
|..+|.+. ... ..+...|......-...+ +.+.|..+|+...+.- +.++..+...++...+.|+.+.|+.+|+.+.
T Consensus 305 AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~-~~~~~~~~~yid~e~~~~~~~~aR~l~er~~ 381 (493)
T 2uy1_A 305 FRKLFIEL-GNE-GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKH-PDSTLLKEEFFLFLLRIGDEENARALFKRLE 381 (493)
T ss_dssp HHHHHHHH-TTS-CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC
T ss_pred HHHHHHHh-hCC-CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 88888888 321 123344432222222223 6888888888888754 3345556667777778888888888888873
Q ss_pred CCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 007400 380 NKENSMLWNTMISALTQHGYDEQAIRLFHDMVR 412 (605)
Q Consensus 380 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 412 (605)
. ....|...+..-...|+.+.+..+++++..
T Consensus 382 k--~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 382 K--TSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp C--BHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred H--HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 2 456677777766777888888887777663
No 133
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.76 E-value=3.9e-08 Score=93.76 Aligned_cols=93 Identities=9% Similarity=0.036 Sum_probs=80.5
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 007400 455 QEHHACLIELLAQAGCSDQLMNQLEKMP--YEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYS 532 (605)
Q Consensus 455 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 532 (605)
...+..+..+|.+.|++++|+..+++.. .+.+...|..++.++...|++++|+..|+++++++|++..++..++.++.
T Consensus 196 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~ 275 (336)
T 1p5q_A 196 LASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQ 275 (336)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 4677888888888888888888888762 34578899999999999999999999999999999999999999999999
Q ss_pred hcCCchHH-HHHHHHH
Q 007400 533 ALGKGRLV-EKVRQLI 547 (605)
Q Consensus 533 ~~g~~~~a-~~~~~~~ 547 (605)
..|++++| ...++.|
T Consensus 276 ~~~~~~~a~~~~~~~~ 291 (336)
T 1p5q_A 276 RIRRQLAREKKLYANM 291 (336)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 99999998 4455555
No 134
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.74 E-value=2.1e-08 Score=82.73 Aligned_cols=115 Identities=8% Similarity=-0.057 Sum_probs=91.5
Q ss_pred HHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHchHhhCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHhCC-
Q 007400 406 LFHDMVRSSVKPD-KITLAVILNACTHSGLVQEGLTYFESMTHDLGIIP-NQEHHACLIELLAQAGCSDQLMNQLEKMP- 482 (605)
Q Consensus 406 ~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~- 482 (605)
.+++++. +.|+ ...+..+...+...|++++|...|+++. ...| +...+..+..+|...|++++|+..|++..
T Consensus 9 ~~~~al~--~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al---~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 83 (148)
T 2vgx_A 9 TIAMLNE--ISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALC---VLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAV 83 (148)
T ss_dssp SHHHHTT--CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH---HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hHHHHHc--CCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHH---HcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 4455555 4553 4477778888888999999999999887 2345 47788888899999999999999998862
Q ss_pred -CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHH
Q 007400 483 -YEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHG 525 (605)
Q Consensus 483 -~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 525 (605)
.+.++..+..++.++...|++++|+..|++++++.|+++....
T Consensus 84 l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 127 (148)
T 2vgx_A 84 MDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFXE 127 (148)
T ss_dssp HSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGHH
T ss_pred cCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcchH
Confidence 3456788889999999999999999999999999998776644
No 135
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.74 E-value=1.3e-07 Score=75.22 Aligned_cols=114 Identities=16% Similarity=0.167 Sum_probs=83.7
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHchHhhCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHH
Q 007400 420 ITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMP--YEHDSYLWNALHGVC 497 (605)
Q Consensus 420 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~ 497 (605)
..+..+...+...|++++|..+++++... .+.+...+..++..+.+.|++++|...++++. .+.+..++..++..+
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 87 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHH
Confidence 45666666666777777777777766622 12235566667777777777777777776652 235677888888899
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcC
Q 007400 498 RIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALG 535 (605)
Q Consensus 498 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 535 (605)
...|++++|...++++++..|+++..+..++.++...|
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 99999999999999999999988888888888887654
No 136
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.73 E-value=4.7e-08 Score=88.20 Aligned_cols=183 Identities=9% Similarity=-0.017 Sum_probs=134.3
Q ss_pred hcCChHHHHHHHHhcCC--CCCcchHHHH-------HHHHHHcCCHHHHHHHHHHHHHCCCCCCH---------------
Q 007400 364 KCGCLNDGRQVFDLTDN--KENSMLWNTM-------ISALTQHGYDEQAIRLFHDMVRSSVKPDK--------------- 419 (605)
Q Consensus 364 ~~g~~~~A~~~~~~~~~--~~~~~~~~~l-------~~~~~~~g~~~~a~~~~~~m~~~~~~p~~--------------- 419 (605)
..++...|.+.|.++.. +.....|..+ ...+...++..+++..+++-+. +.|+.
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~~ 95 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDIT 95 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCCE
T ss_pred cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCcccccc
Confidence 45667777777765542 2244566666 3455555555566655555544 22221
Q ss_pred -------HHHHHHHHHHhccCcHHHHHHHHHHchHhhCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhCCCCCCH----H
Q 007400 420 -------ITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDS----Y 488 (605)
Q Consensus 420 -------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~----~ 488 (605)
.....+...+...|++++|.+.|+.+. ...|+......+...+.+.|++++|+..|++....++. .
T Consensus 96 ~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~---~~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~ 172 (282)
T 4f3v_A 96 YPVTSPLAITMGFAACEAAQGNYADAMEALEAAP---VAGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGA 172 (282)
T ss_dssp EECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSC---CTTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHH
T ss_pred cccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHH---hcCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHH
Confidence 234456777889999999999999887 34565446777778899999999999999977533333 3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CC-CCchHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 007400 489 LWNALHGVCRIHGNIDMGRKVVDQLIDQN--PQ-SSATHGLLSSIYSALGKGRLVEKVRQLINERQ 551 (605)
Q Consensus 489 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--p~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 551 (605)
++..++.++...|++++|+..|+++.... |. .......++.++.+.|+.++|..+|+++.+..
T Consensus 173 a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~ 238 (282)
T 4f3v_A 173 AGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH 238 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 67788999999999999999999998653 54 44578899999999999999999999998754
No 137
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.72 E-value=6.1e-08 Score=79.80 Aligned_cols=104 Identities=8% Similarity=-0.077 Sum_probs=88.2
Q ss_pred CCCC-HHHHHHHHHHHhccCcHHHHHHHHHHchHhhCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHH
Q 007400 415 VKPD-KITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPN-QEHHACLIELLAQAGCSDQLMNQLEKMP--YEHDSYLW 490 (605)
Q Consensus 415 ~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~ 490 (605)
+.|+ ...+..+...+...|++++|...|+++. ...|+ ...|..+..+|...|++++|+..|++.. .+.++..|
T Consensus 31 l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al---~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~ 107 (151)
T 3gyz_A 31 IPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLC---IYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPV 107 (151)
T ss_dssp SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH---HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHH
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH---HhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHH
Confidence 4564 3478888888999999999999999998 34565 7788999999999999999999998862 34567889
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 007400 491 NALHGVCRIHGNIDMGRKVVDQLIDQNPQSS 521 (605)
Q Consensus 491 ~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 521 (605)
..++.++...|++++|+..|++++++.|+++
T Consensus 108 ~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 108 FHTGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 9999999999999999999999999999543
No 138
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.69 E-value=1.9e-06 Score=80.38 Aligned_cols=204 Identities=11% Similarity=-0.014 Sum_probs=139.2
Q ss_pred HHHHHHHCCCCCChHHHHHHHHHHhcccchHHHHHHHHHHHHcCCCCChhH---HHHHHHHHHhcCChHHHHHHHHhcCC
Q 007400 304 LFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIV---MSSLIDMYSKCGCLNDGRQVFDLTDN 380 (605)
Q Consensus 304 ~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~ 380 (605)
.+.++......|+..+...+...+.-.-+ .+.......+... +...+..+...|++++|...++....
T Consensus 33 ~~s~~e~g~~~~~~~~l~~i~~~l~~~~~---------~~~~~~~~~~~~~~~~l~~~i~~~~~~~~y~~a~~~~~~~l~ 103 (293)
T 3u3w_A 33 EVSRIESGAVYPSMDILQGIAAKLQIPII---------HFYEVLIYSDIERKKQFKDQVIMLCKQKRYKEIYNKVWNELK 103 (293)
T ss_dssp HHHHHHTTSCCCCHHHHHHHHHHHTCCTH---------HHHHTTTSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHCCCCCCCHHHHHHHHHHhCcCHH---------HHhCCCCCCcchhHHHHHHHHHHHHHHhhHHHHHHHHHHHhc
Confidence 34444444456777766666655542211 1111111222222 22346778889999999999987554
Q ss_pred C-C---Cc----chHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHhccCcHHHHHHHHHHchH
Q 007400 381 K-E---NS----MLWNTMISALTQHGYDEQAIRLFHDMVRSSVK-PD----KITLAVILNACTHSGLVQEGLTYFESMTH 447 (605)
Q Consensus 381 ~-~---~~----~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~-p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 447 (605)
. + +. ..+..+...+...|++++|+..+++....... ++ ..+++.+..+|...|+++.|..+++++..
T Consensus 104 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~ 183 (293)
T 3u3w_A 104 KEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILK 183 (293)
T ss_dssp TCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3 1 11 12334666677788999999999999984322 22 23688999999999999999999999873
Q ss_pred hh----CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHhCC-------CCCC-HHHHHHHHHHHHhcC-CHHHHHHHHHHH
Q 007400 448 DL----GIIPN-QEHHACLIELLAQAGCSDQLMNQLEKMP-------YEHD-SYLWNALHGVCRIHG-NIDMGRKVVDQL 513 (605)
Q Consensus 448 ~~----~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~~~-~~~~~~l~~~~~~~g-~~~~A~~~~~~~ 513 (605)
.. +..+. ..++..++.+|.+.|++++|...+++.. ..+. ..++..++.++...| ++++|.+.++++
T Consensus 184 ~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~A 263 (293)
T 3u3w_A 184 QLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKA 263 (293)
T ss_dssp HHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHH
Confidence 21 22222 4478899999999999999999988651 1122 678888999999999 579999999999
Q ss_pred Hhc
Q 007400 514 IDQ 516 (605)
Q Consensus 514 ~~~ 516 (605)
+++
T Consensus 264 l~i 266 (293)
T 3u3w_A 264 SFF 266 (293)
T ss_dssp HHH
T ss_pred HHH
Confidence 875
No 139
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.69 E-value=6.9e-08 Score=76.41 Aligned_cols=95 Identities=8% Similarity=-0.062 Sum_probs=83.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhc
Q 007400 457 HHACLIELLAQAGCSDQLMNQLEKMP--YEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSAL 534 (605)
Q Consensus 457 ~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 534 (605)
.+..+...+.+.|++++|+..+++.. .+.+...|..++.++...|++++|+..|+++++++|+++..+..++.+|...
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 35567778889999999999998862 3457889999999999999999999999999999999999999999999999
Q ss_pred CCchHHHHHHHHHHhCC
Q 007400 535 GKGRLVEKVRQLINERQ 551 (605)
Q Consensus 535 g~~~~a~~~~~~~~~~~ 551 (605)
|++++|+..++++.+..
T Consensus 99 g~~~~A~~~~~~al~~~ 115 (121)
T 1hxi_A 99 HNANAALASLRAWLLSQ 115 (121)
T ss_dssp HHHHHHHHHHHHHHC--
T ss_pred CCHHHHHHHHHHHHHhC
Confidence 99999999999987643
No 140
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.67 E-value=4.2e-07 Score=76.46 Aligned_cols=107 Identities=11% Similarity=0.035 Sum_probs=70.0
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHchHhhCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHH
Q 007400 419 KITLAVILNACTHSGLVQEGLTYFESMTHDLGIIP-NQEHHACLIELLAQAGCSDQLMNQLEKMP--YEHDSYLWNALHG 495 (605)
Q Consensus 419 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~ 495 (605)
...+..+...+...|++++|+..|+++.. ..| +...+..+..+|.+.|++++|+..+++.. .+.+...|..++.
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 87 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALS---IAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 34666666777777777777777777762 234 35666677777777777777777776641 2345666666777
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHH
Q 007400 496 VCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLS 528 (605)
Q Consensus 496 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 528 (605)
++...|++++|...|++++++.|++...+...+
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 120 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRG 120 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence 777777777777777777777776666544433
No 141
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.67 E-value=1.3e-07 Score=73.41 Aligned_cols=98 Identities=12% Similarity=0.016 Sum_probs=81.5
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--CCchHHHHHHH
Q 007400 455 QEHHACLIELLAQAGCSDQLMNQLEKMP--YEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQ--SSATHGLLSSI 530 (605)
Q Consensus 455 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~--~~~~~~~l~~~ 530 (605)
...+..++..+...|++++|...+++.. .+.+...+..++.++...|++++|...++++++..|. +...+..++.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~ 85 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADA 85 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHH
Confidence 4456667777778888888888777652 2456778888999999999999999999999999998 88999999999
Q ss_pred HHhc-CCchHHHHHHHHHHhCCC
Q 007400 531 YSAL-GKGRLVEKVRQLINERQF 552 (605)
Q Consensus 531 ~~~~-g~~~~a~~~~~~~~~~~~ 552 (605)
+... |++++|.+.++.+.....
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~p 108 (112)
T 2kck_A 86 LRYIEGKEVEAEIAEARAKLEHH 108 (112)
T ss_dssp HTTCSSCSHHHHHHHHHHGGGCC
T ss_pred HHHHhCCHHHHHHHHHHHhhccc
Confidence 9999 999999999998876543
No 142
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.64 E-value=3.2e-07 Score=74.43 Aligned_cols=97 Identities=6% Similarity=-0.158 Sum_probs=81.3
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHH
Q 007400 454 NQEHHACLIELLAQAGCSDQLMNQLEKMP--YEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIY 531 (605)
Q Consensus 454 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 531 (605)
+...+..+...+...|++++|...+++.. .+.+...|..++.++...|++++|...++++++..|+++..+..++.+|
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 87 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ 87 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHH
Confidence 46677777778888888888888877651 3456778888889999999999999999999999999999999999999
Q ss_pred HhcCCchHHHHHHHHHHhC
Q 007400 532 SALGKGRLVEKVRQLINER 550 (605)
Q Consensus 532 ~~~g~~~~a~~~~~~~~~~ 550 (605)
...|++++|...++++.+.
T Consensus 88 ~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 88 LEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHH
Confidence 9999999999999988764
No 143
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.63 E-value=6.6e-08 Score=79.19 Aligned_cols=114 Identities=10% Similarity=-0.024 Sum_probs=86.7
Q ss_pred CCCC-HHHHHHHHHHHhccCcHHHHHHHHHHchHhhCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHH
Q 007400 415 VKPD-KITLAVILNACTHSGLVQEGLTYFESMTHDLGIIP-NQEHHACLIELLAQAGCSDQLMNQLEKMP--YEHDSYLW 490 (605)
Q Consensus 415 ~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~ 490 (605)
+.|+ ...+..+...+...|++++|...|+++.. ..| +...+..+..+|.+.|++++|+..+++.. .+.++..+
T Consensus 13 ~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 89 (142)
T 2xcb_A 13 LSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCM---LDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFP 89 (142)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHH
T ss_pred CCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHH---hCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHH
Confidence 3443 34566677777888888888888888772 344 36677788888888888888888888752 24567788
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHH
Q 007400 491 NALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIY 531 (605)
Q Consensus 491 ~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 531 (605)
..++.++...|++++|...|+++++..|+++........+.
T Consensus 90 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 130 (142)
T 2xcb_A 90 FHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAARAG 130 (142)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHH
Confidence 88999999999999999999999999998877665544443
No 144
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.62 E-value=6.4e-07 Score=72.02 Aligned_cols=97 Identities=12% Similarity=-0.035 Sum_probs=88.4
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHH
Q 007400 454 NQEHHACLIELLAQAGCSDQLMNQLEKM-P-YEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIY 531 (605)
Q Consensus 454 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 531 (605)
+...+..++..+.+.|++++|...+++. . .+.+..++..++..+...|++++|+..++++++..|++...+..++.++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 94 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAAL 94 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 3678889999999999999999999985 2 3457888999999999999999999999999999999999999999999
Q ss_pred HhcCCchHHHHHHHHHHhC
Q 007400 532 SALGKGRLVEKVRQLINER 550 (605)
Q Consensus 532 ~~~g~~~~a~~~~~~~~~~ 550 (605)
...|++++|...+++..+.
T Consensus 95 ~~~~~~~~A~~~~~~~~~~ 113 (133)
T 2lni_A 95 EAMKDYTKAMDVYQKALDL 113 (133)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHh
Confidence 9999999999999988764
No 145
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.61 E-value=1.9e-07 Score=74.64 Aligned_cols=94 Identities=6% Similarity=-0.057 Sum_probs=73.6
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc-------hHHH
Q 007400 456 EHHACLIELLAQAGCSDQLMNQLEKMP--YEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSA-------THGL 526 (605)
Q Consensus 456 ~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~-------~~~~ 526 (605)
..+..++..+.+.|++++|++.|++.. .+.+..+|..++.+|...|++++|+..+++++++.|++.. +|..
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 356667777888888888888887752 2456778888888888899999999999999888776543 5667
Q ss_pred HHHHHHhcCCchHHHHHHHHHHh
Q 007400 527 LSSIYSALGKGRLVEKVRQLINE 549 (605)
Q Consensus 527 l~~~~~~~g~~~~a~~~~~~~~~ 549 (605)
++.++...|++++|++.|++..+
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHh
Confidence 78888888899999988887765
No 146
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.61 E-value=6.3e-07 Score=78.37 Aligned_cols=153 Identities=9% Similarity=-0.036 Sum_probs=86.4
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHchHhh---CCCCC-HHHHHHHHHHHHhcCCh
Q 007400 396 QHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDL---GIIPN-QEHHACLIELLAQAGCS 471 (605)
Q Consensus 396 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~p~-~~~~~~l~~~~~~~g~~ 471 (605)
..|++++|.++++.+... ......++..+...+...|++++|...+++..... +..|. ..++..+...+...|++
T Consensus 4 ~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ---CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred ccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 345566665533333221 11123455555566666666666666666554211 11222 34556666666666776
Q ss_pred HHHHHHHHhCC-----CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC--CCC----chHHHHHHHHHhcCC
Q 007400 472 DQLMNQLEKMP-----YEHD----SYLWNALHGVCRIHGNIDMGRKVVDQLIDQNP--QSS----ATHGLLSSIYSALGK 536 (605)
Q Consensus 472 ~~A~~~~~~~~-----~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p--~~~----~~~~~l~~~~~~~g~ 536 (605)
++|.+.+++.. ...+ ..++..++..+...|++++|...++++++..+ .+. .++..++.++...|+
T Consensus 83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 162 (203)
T 3gw4_A 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKN 162 (203)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcC
Confidence 66666665531 1112 23456677777788888888888888876521 121 234677888888888
Q ss_pred chHHHHHHHHHHh
Q 007400 537 GRLVEKVRQLINE 549 (605)
Q Consensus 537 ~~~a~~~~~~~~~ 549 (605)
+++|...+++..+
T Consensus 163 ~~~A~~~~~~al~ 175 (203)
T 3gw4_A 163 LLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 8888888777654
No 147
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.60 E-value=2.5e-07 Score=79.01 Aligned_cols=126 Identities=14% Similarity=0.111 Sum_probs=100.5
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHchHhhCCCC-CHHHHHHHHHH-HHhcCCh
Q 007400 395 TQHGYDEQAIRLFHDMVRSSVKP-DKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIP-NQEHHACLIEL-LAQAGCS 471 (605)
Q Consensus 395 ~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~-~~~~g~~ 471 (605)
...|++++|+..+++..+. .| +...+..+..++...|++++|...|+++... .| +...+..+..+ +...|++
T Consensus 21 ~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~la~~l~~~~~~~ 95 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRA--NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQL---RGENAELYAALATVLYYQASQH 95 (177)
T ss_dssp C-----CCCCHHHHHHHHH--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---HCSCHHHHHHHHHHHHHHTTTC
T ss_pred hhccCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHhcCCc
Confidence 4568888899999988874 44 5678889999999999999999999998833 34 46778888888 7789998
Q ss_pred --HHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHH
Q 007400 472 --DQLMNQLEKMP--YEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHG 525 (605)
Q Consensus 472 --~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 525 (605)
++|...+++.. .+.+...+..++.++...|++++|...|+++++..|++.....
T Consensus 96 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 153 (177)
T 2e2e_A 96 MTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRTQ 153 (177)
T ss_dssp CCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHHH
T ss_pred chHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHHH
Confidence 99999998862 3456788899999999999999999999999999998765443
No 148
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.59 E-value=8.1e-07 Score=73.02 Aligned_cols=111 Identities=13% Similarity=0.017 Sum_probs=76.0
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHchHhhCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHH
Q 007400 419 KITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPN----QEHHACLIELLAQAGCSDQLMNQLEKMP--YEHDSYLWNA 492 (605)
Q Consensus 419 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~ 492 (605)
...+..+...+...|++++|...|++.. ...|+ ...+..+..+|...|++++|...+++.. .+.+...+..
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~---~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 104 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAYTQAL---GLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYR 104 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHH---TSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHH---HHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHH
Confidence 3455556666666666666666666665 33444 4556666666777777777777666541 2345677777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 007400 493 LHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYS 532 (605)
Q Consensus 493 l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 532 (605)
++.++...|++++|...|+++++..|++...+..+..+..
T Consensus 105 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 144 (148)
T 2dba_A 105 RSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISG 144 (148)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHh
Confidence 8888888888888888888888888887777776666653
No 149
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.59 E-value=1.4e-06 Score=81.29 Aligned_cols=163 Identities=11% Similarity=-0.017 Sum_probs=119.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhcCCC-CC-c------chHHHHHHHHHHcCCHHHHHHHHHHHHHCCC---CCC--HH
Q 007400 354 VMSSLIDMYSKCGCLNDGRQVFDLTDNK-EN-S------MLWNTMISALTQHGYDEQAIRLFHDMVRSSV---KPD--KI 420 (605)
Q Consensus 354 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~-~------~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~---~p~--~~ 420 (605)
.+...+..+...|++++|.+.++..... +. . ..+..+...+...|++++|+..+++..+... .+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 3445667788889999998888753321 11 1 1234455667778899999999999886321 122 34
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHchH---hhCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHhCC-------CCC-CH
Q 007400 421 TLAVILNACTHSGLVQEGLTYFESMTH---DLGIIPN--QEHHACLIELLAQAGCSDQLMNQLEKMP-------YEH-DS 487 (605)
Q Consensus 421 ~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~~-~~ 487 (605)
+++.+...|...|++++|...++++.. ..+..+. ..++..++.+|.+.|++++|...+++.. ... -.
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 888899999999999999999998873 2222221 2588899999999999999999988751 111 26
Q ss_pred HHHHHHHHHHHhcCCHHHH-HHHHHHHHhc
Q 007400 488 YLWNALHGVCRIHGNIDMG-RKVVDQLIDQ 516 (605)
Q Consensus 488 ~~~~~l~~~~~~~g~~~~A-~~~~~~~~~~ 516 (605)
.++..++.++...|++++| ...+++++..
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 6788899999999999999 8889998865
No 150
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.59 E-value=3.1e-07 Score=73.32 Aligned_cols=110 Identities=6% Similarity=-0.077 Sum_probs=79.8
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHchHhhCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHH
Q 007400 420 ITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPN-QEHHACLIELLAQAGCSDQLMNQLEKMP--YEHDSYLWNALHGV 496 (605)
Q Consensus 420 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~ 496 (605)
..+..+...+...|++++|...|++... ..|+ ...+..+..+|.+.|++++|+..+++.. .+.+...|..++.+
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 81 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIK---RAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATA 81 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHH---hCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 3455566666677777777777776662 2333 5667777777777777777777776652 23567788888999
Q ss_pred HHhcCCHHHHHHHHHHHHhcC------CCCCchHHHHHHHHH
Q 007400 497 CRIHGNIDMGRKVVDQLIDQN------PQSSATHGLLSSIYS 532 (605)
Q Consensus 497 ~~~~g~~~~A~~~~~~~~~~~------p~~~~~~~~l~~~~~ 532 (605)
+...|++++|...|+++++.. |.+......+..+..
T Consensus 82 ~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~ 123 (126)
T 3upv_A 82 QIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQ 123 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHH
Confidence 999999999999999999998 877777777766654
No 151
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.59 E-value=5.7e-07 Score=70.49 Aligned_cols=94 Identities=9% Similarity=-0.006 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHh
Q 007400 456 EHHACLIELLAQAGCSDQLMNQLEKMP--YEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSA 533 (605)
Q Consensus 456 ~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 533 (605)
..+..++..+...|++++|...+++.. .+.+...+..++..+...|++++|...++++++..|+++..+..++.++..
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~ 84 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEF 84 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 344555556666666666666665541 233556666666666666777777777777777766666666677777777
Q ss_pred cCCchHHHHHHHHHHh
Q 007400 534 LGKGRLVEKVRQLINE 549 (605)
Q Consensus 534 ~g~~~~a~~~~~~~~~ 549 (605)
.|++++|...+++..+
T Consensus 85 ~~~~~~A~~~~~~~~~ 100 (118)
T 1elw_A 85 LNRFEEAKRTYEEGLK 100 (118)
T ss_dssp TTCHHHHHHHHHHHHT
T ss_pred HhhHHHHHHHHHHHHH
Confidence 7777777777666654
No 152
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.58 E-value=4.3e-07 Score=76.45 Aligned_cols=95 Identities=5% Similarity=-0.061 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 007400 455 QEHHACLIELLAQAGCSDQLMNQLEKMP--YEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYS 532 (605)
Q Consensus 455 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 532 (605)
...+..+...+.+.|++++|++.|++.. .+.+...|..++.++...|++++|+..|+++++++|++...+..++.+|.
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 90 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARF 90 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 3445555555556666666665555541 22345555555555556666666666666666666655555666666666
Q ss_pred hcCCchHHHHHHHHHHh
Q 007400 533 ALGKGRLVEKVRQLINE 549 (605)
Q Consensus 533 ~~g~~~~a~~~~~~~~~ 549 (605)
..|++++|+..|++..+
T Consensus 91 ~~g~~~~A~~~~~~al~ 107 (164)
T 3sz7_A 91 DMADYKGAKEAYEKGIE 107 (164)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HccCHHHHHHHHHHHHH
Confidence 66666666555555544
No 153
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.57 E-value=5.7e-07 Score=70.49 Aligned_cols=109 Identities=9% Similarity=0.025 Sum_probs=79.2
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHchHhhCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHH
Q 007400 420 ITLAVILNACTHSGLVQEGLTYFESMTHDLGIIP-NQEHHACLIELLAQAGCSDQLMNQLEKMP--YEHDSYLWNALHGV 496 (605)
Q Consensus 420 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~ 496 (605)
..+..+...+...|++++|...++++... .| +...+..++.++...|++++|...+++.. .+.+...+..++.+
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~ 81 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKL---DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAA 81 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHH---CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 34555666666667777777777766622 23 35566667777777777777777776641 23467788888889
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHH
Q 007400 497 CRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIY 531 (605)
Q Consensus 497 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 531 (605)
+...|++++|...++++++..|+++..+..++.+.
T Consensus 82 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 116 (118)
T 1elw_A 82 LEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME 116 (118)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence 99999999999999999999998888887777664
No 154
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.57 E-value=3.1e-07 Score=80.15 Aligned_cols=94 Identities=9% Similarity=0.010 Sum_probs=73.2
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHh
Q 007400 456 EHHACLIELLAQAGCSDQLMNQLEKMP--YEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSA 533 (605)
Q Consensus 456 ~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 533 (605)
..+..+..+|.+.|++++|+..+++.. .+.+..++..++.++...|++++|+..|+++++..|++..++..++.++..
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 168 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNK 168 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHH
Confidence 567778888888888888888887752 345788899999999999999999999999999999999999999999999
Q ss_pred cCCchHHH-HHHHHHHh
Q 007400 534 LGKGRLVE-KVRQLINE 549 (605)
Q Consensus 534 ~g~~~~a~-~~~~~~~~ 549 (605)
.|+..++. ..++.+..
T Consensus 169 ~~~~~~~~~~~~~~~f~ 185 (198)
T 2fbn_A 169 LKEARKKDKLTFGGMFD 185 (198)
T ss_dssp HHHHHC-----------
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 88887776 45555543
No 155
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.56 E-value=1.4e-06 Score=68.99 Aligned_cols=96 Identities=16% Similarity=0.130 Sum_probs=87.4
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 007400 455 QEHHACLIELLAQAGCSDQLMNQLEKMP--YEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYS 532 (605)
Q Consensus 455 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 532 (605)
...+..+...+...|++++|.+.++++. .+.+..++..++..+...|++++|...++++++..|+++..+..++.++.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 5678889999999999999999998862 34578889999999999999999999999999999999999999999999
Q ss_pred hcCCchHHHHHHHHHHhC
Q 007400 533 ALGKGRLVEKVRQLINER 550 (605)
Q Consensus 533 ~~g~~~~a~~~~~~~~~~ 550 (605)
..|++++|...++++.+.
T Consensus 89 ~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHh
Confidence 999999999999988764
No 156
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.55 E-value=6.3e-07 Score=75.21 Aligned_cols=65 Identities=9% Similarity=0.025 Sum_probs=55.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 007400 486 DSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINER 550 (605)
Q Consensus 486 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 550 (605)
+..+|..++.++...|++++|+..++++++++|+++.+|..++.+|...|++++|...+++..+.
T Consensus 62 ~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 62 NIPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 34577788888888999999999999999999988899999999999999999999998887763
No 157
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.54 E-value=1.5e-06 Score=69.44 Aligned_cols=96 Identities=13% Similarity=-0.016 Sum_probs=87.5
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 007400 455 QEHHACLIELLAQAGCSDQLMNQLEKMP--YEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYS 532 (605)
Q Consensus 455 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 532 (605)
...+..++..+...|++++|...+++.. .+.+...+..++..+...|++++|...++++++..|+++..+..++.++.
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALS 91 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHHH
Confidence 5678888999999999999999998862 34578889999999999999999999999999999999999999999999
Q ss_pred hcCCchHHHHHHHHHHhC
Q 007400 533 ALGKGRLVEKVRQLINER 550 (605)
Q Consensus 533 ~~g~~~~a~~~~~~~~~~ 550 (605)
..|++++|...+++..+.
T Consensus 92 ~~~~~~~A~~~~~~~~~~ 109 (131)
T 2vyi_A 92 SLNKHVEAVAYYKKALEL 109 (131)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHhc
Confidence 999999999999998764
No 158
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.52 E-value=2.1e-06 Score=70.48 Aligned_cols=97 Identities=10% Similarity=-0.048 Sum_probs=88.2
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHH
Q 007400 454 NQEHHACLIELLAQAGCSDQLMNQLEKM-PYEHD----SYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLS 528 (605)
Q Consensus 454 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 528 (605)
+...+..+...+...|++++|...+++. ...|+ ...+..++.++...|++++|+..++++++..|++...+..++
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a 106 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRS 106 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHH
Confidence 4678888999999999999999999986 34566 678888999999999999999999999999999999999999
Q ss_pred HHHHhcCCchHHHHHHHHHHhC
Q 007400 529 SIYSALGKGRLVEKVRQLINER 550 (605)
Q Consensus 529 ~~~~~~g~~~~a~~~~~~~~~~ 550 (605)
.++...|++++|...+++..+.
T Consensus 107 ~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 107 QALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHc
Confidence 9999999999999999988764
No 159
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.51 E-value=4.9e-07 Score=79.09 Aligned_cols=153 Identities=10% Similarity=-0.042 Sum_probs=101.3
Q ss_pred hcCChHHHHHHHHhcCCCC--CcchHHHHHHHHHHcCCHHHHHHHHHHHHH----CCCCC-CHHHHHHHHHHHhccCcHH
Q 007400 364 KCGCLNDGRQVFDLTDNKE--NSMLWNTMISALTQHGYDEQAIRLFHDMVR----SSVKP-DKITLAVILNACTHSGLVQ 436 (605)
Q Consensus 364 ~~g~~~~A~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~----~~~~p-~~~~~~~l~~~~~~~g~~~ 436 (605)
..|++++|.+.++.+...| ...++..+...+...|++++|...+++..+ .+..| ...++..+...+...|+++
T Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 4566777777222222111 445677777778888888888888877665 11122 2346777777888888888
Q ss_pred HHHHHHHHchHhh---CCCC--CHHHHHHHHHHHHhcCChHHHHHHHHhCC----CCCC----HHHHHHHHHHHHhcCCH
Q 007400 437 EGLTYFESMTHDL---GIIP--NQEHHACLIELLAQAGCSDQLMNQLEKMP----YEHD----SYLWNALHGVCRIHGNI 503 (605)
Q Consensus 437 ~a~~~~~~~~~~~---~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~----~~~~~~l~~~~~~~g~~ 503 (605)
+|...+++..... +..| ....+..+...+...|++++|...+++.. ...+ ..++..++.++...|++
T Consensus 84 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 163 (203)
T 3gw4_A 84 AARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNL 163 (203)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCH
Confidence 8888888776331 2122 13467778888888888888888887641 1122 23456788888999999
Q ss_pred HHHHHHHHHHHhc
Q 007400 504 DMGRKVVDQLIDQ 516 (605)
Q Consensus 504 ~~A~~~~~~~~~~ 516 (605)
++|...+++++++
T Consensus 164 ~~A~~~~~~al~~ 176 (203)
T 3gw4_A 164 LEAQQHWLRARDI 176 (203)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999999876
No 160
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.49 E-value=6.1e-05 Score=70.41 Aligned_cols=227 Identities=12% Similarity=0.069 Sum_probs=141.0
Q ss_pred HHHhCCChHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHhccc-chHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhc-C-
Q 007400 291 GYTRNGLGQKALELFTRMMILRIRPN-QHTFSSCLCACASIV-SLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKC-G- 366 (605)
Q Consensus 291 ~~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g- 366 (605)
...+.+..++|++++++++.. .|+ ...++.--..+...| .++++...+..++..+ +-+..+|+.-..++.+. +
T Consensus 63 ~~~~~e~se~AL~lt~~~L~~--nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~ 139 (349)
T 3q7a_A 63 IAAKEEKSERALELTEIIVRM--NPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQ 139 (349)
T ss_dssp HHHTTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCS
T ss_pred HHHhCCCCHHHHHHHHHHHHh--CchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCC
Confidence 334445567888888888874 344 344555555555566 5888888888888766 55666677666666665 6
Q ss_pred ChHHHHHHHHhcCCC--CCcchHHHHHHHHHHcCCHH--------HHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCc-
Q 007400 367 CLNDGRQVFDLTDNK--ENSMLWNTMISALTQHGYDE--------QAIRLFHDMVRSSVKP-DKITLAVILNACTHSGL- 434 (605)
Q Consensus 367 ~~~~A~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~--------~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~- 434 (605)
++++++++++.+... .|..+|+-..-.+.+.|.++ ++++.++++++. .| |...|+.....+.+.+.
T Consensus 140 ~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~--dp~N~SAW~~R~~lL~~l~~~ 217 (349)
T 3q7a_A 140 DPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRV--DGRNNSAWGWRWYLRVSRPGA 217 (349)
T ss_dssp CCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHTTSTTC
T ss_pred ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcccc
Confidence 778888888876643 24556655555555545554 788888888884 34 56677777777777665
Q ss_pred ------HHHHHHHHHHchHhhCCCCC-HHHHHHHHHHHHhcCCh--------------------HHHHHHHHhCCC----
Q 007400 435 ------VQEGLTYFESMTHDLGIIPN-QEHHACLIELLAQAGCS--------------------DQLMNQLEKMPY---- 483 (605)
Q Consensus 435 ------~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~--------------------~~A~~~~~~~~~---- 483 (605)
++++++.++++. ...|+ ...|+.+-..+.+.|.. ....+...++..
T Consensus 218 ~~~~~~~~eELe~~~~aI---~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (349)
T 3q7a_A 218 ETSSRSLQDELIYILKSI---HLIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLP 294 (349)
T ss_dssp CCCHHHHHHHHHHHHHHH---HHCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCC
T ss_pred ccchHHHHHHHHHHHHHH---HhCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccc
Confidence 677888887777 33454 66777766667666653 233333333321
Q ss_pred ----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-hcCCCCCchHH
Q 007400 484 ----EHDSYLWNALHGVCRIHGNIDMGRKVVDQLI-DQNPQSSATHG 525 (605)
Q Consensus 484 ----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~p~~~~~~~ 525 (605)
.+.+..+..++..|...|+.++|.++++.+. +.+|-....|.
T Consensus 295 ~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~~yw~ 341 (349)
T 3q7a_A 295 EDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQMRAGYWE 341 (349)
T ss_dssp SSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHH
T ss_pred cccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChHHHHHHH
Confidence 2455666666777777777777777777765 33664444443
No 161
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.48 E-value=1.1e-06 Score=70.22 Aligned_cols=91 Identities=12% Similarity=0.046 Sum_probs=64.4
Q ss_pred HHHHHHHhcCChHHHHHHHHhCC--CCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC---CchHHHHHHHH
Q 007400 460 CLIELLAQAGCSDQLMNQLEKMP--YEHDS---YLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQS---SATHGLLSSIY 531 (605)
Q Consensus 460 ~l~~~~~~~g~~~~A~~~~~~~~--~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~~ 531 (605)
.+...+...|++++|...+++.. .+.+. ..+..++.++...|++++|...|+++++..|++ +.++..++.++
T Consensus 7 ~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~ 86 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQ 86 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHH
Confidence 34556666777777777666541 11222 466667777788888888888888888888877 56677888888
Q ss_pred HhcCCchHHHHHHHHHHhC
Q 007400 532 SALGKGRLVEKVRQLINER 550 (605)
Q Consensus 532 ~~~g~~~~a~~~~~~~~~~ 550 (605)
...|++++|...++.+.+.
T Consensus 87 ~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 87 YGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHH
Confidence 8888888888888877653
No 162
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.47 E-value=7.8e-07 Score=72.09 Aligned_cols=111 Identities=7% Similarity=-0.126 Sum_probs=80.9
Q ss_pred CHHHHHHHHHHHhccCcHHHHHHHHHHchHhhCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHH
Q 007400 418 DKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPN-QEHHACLIELLAQAGCSDQLMNQLEKMP--YEHDSYLWNALH 494 (605)
Q Consensus 418 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~ 494 (605)
+...+..+...+...|++++|...|+++.. ..|+ ...+..+..++...|++++|...+++.. .+.+...|..++
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~---~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 84 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAIT---RNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG 84 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHh---hCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHH
Confidence 455677777777777777777777777762 2333 6677777777778888888877777652 245677888899
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCC-----CCchHHHHHHHH
Q 007400 495 GVCRIHGNIDMGRKVVDQLIDQNPQ-----SSATHGLLSSIY 531 (605)
Q Consensus 495 ~~~~~~g~~~~A~~~~~~~~~~~p~-----~~~~~~~l~~~~ 531 (605)
.++...|++++|...|+++++..|+ +......+..+.
T Consensus 85 ~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~ 126 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAK 126 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998876 445555555444
No 163
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.46 E-value=7.4e-07 Score=72.39 Aligned_cols=63 Identities=13% Similarity=0.054 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhc-------CCCCCchH----HHHHHHHHhcCCchHHHHHHHHHHhC
Q 007400 488 YLWNALHGVCRIHGNIDMGRKVVDQLIDQ-------NPQSSATH----GLLSSIYSALGKGRLVEKVRQLINER 550 (605)
Q Consensus 488 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~p~~~~~~----~~l~~~~~~~g~~~~a~~~~~~~~~~ 550 (605)
..|..++.++...|++++|+..+++++++ +|++...| ...+.++...|++++|+..|++..+.
T Consensus 58 ~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel 131 (159)
T 2hr2_A 58 FCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 131 (159)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 48888999999999999999999999999 99999999 99999999999999999999998764
No 164
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.45 E-value=6.7e-07 Score=89.48 Aligned_cols=118 Identities=4% Similarity=-0.029 Sum_probs=92.5
Q ss_pred HHHHhccCcHHHHHHHHHHchHhhCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCC
Q 007400 426 LNACTHSGLVQEGLTYFESMTHDLGIIPN-QEHHACLIELLAQAGCSDQLMNQLEKMP--YEHDSYLWNALHGVCRIHGN 502 (605)
Q Consensus 426 ~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~ 502 (605)
...+...|++++|...++++.+ ..|+ ...+..+..+|.+.|++++|++.+++.. .+.+..+|..++.++...|+
T Consensus 13 g~~~~~~g~~~~A~~~~~~Al~---~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~ 89 (477)
T 1wao_1 13 ANDYFKAKDYENAIKFYSQAIE---LNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGK 89 (477)
T ss_dssp SSSTTTTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHhCCHHHHHHHHHHHHH---hCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 3445667788888888887772 2444 6777888888888888888888887752 24567889999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCchHHHHHHH--HHhcCCchHHHHHHHH
Q 007400 503 IDMGRKVVDQLIDQNPQSSATHGLLSSI--YSALGKGRLVEKVRQL 546 (605)
Q Consensus 503 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~a~~~~~~ 546 (605)
+++|++.|+++++..|++...+..++.+ +.+.|++++|++.+++
T Consensus 90 ~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~ 135 (477)
T 1wao_1 90 FRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEH 135 (477)
T ss_dssp HHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 9999999999999999999999999888 8889999999999884
No 165
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.43 E-value=3.1e-06 Score=71.03 Aligned_cols=127 Identities=9% Similarity=-0.093 Sum_probs=96.3
Q ss_pred chHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHchHhhCCCC-CHHHHHHHH
Q 007400 385 MLWNTMISALTQHGYDEQAIRLFHDMVRSSVKP-DKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIP-NQEHHACLI 462 (605)
Q Consensus 385 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~ 462 (605)
..|..+...+...|++++|...|++..+. .| +..++..+..++...|++++|...+++.... .| +...+..++
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~~a 88 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL---DKKYIKGYYRRA 88 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcccHHHHHHHH
Confidence 45667777788888999999988888874 44 5668888888888889999999999888732 34 467888888
Q ss_pred HHHHhcCChHHHHHHHHhCC--CCCCHHHHHH--HHHHHHhcCCHHHHHHHHHHHHhc
Q 007400 463 ELLAQAGCSDQLMNQLEKMP--YEHDSYLWNA--LHGVCRIHGNIDMGRKVVDQLIDQ 516 (605)
Q Consensus 463 ~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~--l~~~~~~~g~~~~A~~~~~~~~~~ 516 (605)
.++...|++++|...+++.. .+.+...+.. .+..+...|++++|...+++..+.
T Consensus 89 ~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 146 (166)
T 1a17_A 89 ASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSV 146 (166)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHHH
Confidence 88999999999998888762 2345555533 444477789999999998887654
No 166
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.43 E-value=2.2e-06 Score=85.36 Aligned_cols=95 Identities=7% Similarity=-0.016 Sum_probs=77.1
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 007400 455 QEHHACLIELLAQAGCSDQLMNQLEKMP--YEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYS 532 (605)
Q Consensus 455 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 532 (605)
...|..+..+|.+.|++++|+..+++.. .+.+...|..++.+|...|++++|+..|+++++++|++..++..++.++.
T Consensus 317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~ 396 (457)
T 1kt0_A 317 LAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQK 396 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 4677888888999999999998888762 34578899999999999999999999999999999999999999999999
Q ss_pred hcCCchHHHH-HHHHHHh
Q 007400 533 ALGKGRLVEK-VRQLINE 549 (605)
Q Consensus 533 ~~g~~~~a~~-~~~~~~~ 549 (605)
+.|+++++.. .++.|..
T Consensus 397 ~~~~~~~a~~~~~~~~f~ 414 (457)
T 1kt0_A 397 KAKEHNERDRRIYANMFK 414 (457)
T ss_dssp HHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 9999998764 4555543
No 167
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.43 E-value=9.2e-07 Score=88.51 Aligned_cols=113 Identities=10% Similarity=-0.031 Sum_probs=62.2
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHchHhhCCCCC-HHHHHHHHHHHHhcCCh
Q 007400 394 LTQHGYDEQAIRLFHDMVRSSVKP-DKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPN-QEHHACLIELLAQAGCS 471 (605)
Q Consensus 394 ~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~ 471 (605)
+.+.|++++|++.+++.++ ..| +..++..+..++...|++++|+..++++. .+.|+ ...+..+..+|.+.|++
T Consensus 16 ~~~~g~~~~A~~~~~~Al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al---~l~p~~~~~~~~lg~~~~~~g~~ 90 (477)
T 1wao_1 16 YFKAKDYENAIKFYSQAIE--LNPSNAIYYGNRSLAYLRTECYGYALGDATRAI---ELDKKYIKGYYRRAASNMALGKF 90 (477)
T ss_dssp TTTTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH---HSCTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHhCCHHHHHHHHHHHHH--hCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHH---HhCCCCHHHHHHHHHHHHHcCCH
Confidence 4455666666666666666 334 34566666666666666666666666666 22343 55666666666666666
Q ss_pred HHHHHHHHhCC--CCCCHHHHHHHHHH--HHhcCCHHHHHHHHH
Q 007400 472 DQLMNQLEKMP--YEHDSYLWNALHGV--CRIHGNIDMGRKVVD 511 (605)
Q Consensus 472 ~~A~~~~~~~~--~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~ 511 (605)
++|.+.+++.. .+.+...+..+..+ +...|++++|++.++
T Consensus 91 ~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 91 RAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 66666666541 11223334434333 556667777777766
No 168
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.42 E-value=2e-06 Score=68.58 Aligned_cols=98 Identities=6% Similarity=-0.008 Sum_probs=52.2
Q ss_pred HHHHHHhccCcHHHHHHHHHHchHhhCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHhCC-----CCCC----HHHHHHH
Q 007400 424 VILNACTHSGLVQEGLTYFESMTHDLGIIPN-QEHHACLIELLAQAGCSDQLMNQLEKMP-----YEHD----SYLWNAL 493 (605)
Q Consensus 424 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~----~~~~~~l 493 (605)
.+...+.+.|++++|+..|+++. .+.|+ ...|..+..+|.+.|++++|++.+++.. ..++ ..+|..+
T Consensus 13 ~lG~~~~~~~~~~~A~~~y~~Al---~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l 89 (127)
T 4gcn_A 13 DLGNAAYKQKDFEKAHVHYDKAI---ELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRA 89 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHH---HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHH---HhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHH
Confidence 33444444444444444444444 11222 3344444444444444444444444321 0111 2356667
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCchHH
Q 007400 494 HGVCRIHGNIDMGRKVVDQLIDQNPQSSATHG 525 (605)
Q Consensus 494 ~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 525 (605)
+.++...|++++|++.|+++++..| ++....
T Consensus 90 g~~~~~~~~~~~A~~~~~kal~~~~-~~~~~~ 120 (127)
T 4gcn_A 90 GNAFQKQNDLSLAVQWFHRSLSEFR-DPELVK 120 (127)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSC-CHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCc-CHHHHH
Confidence 7888888999999999999988877 444433
No 169
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.41 E-value=2e-06 Score=81.93 Aligned_cols=129 Identities=9% Similarity=-0.012 Sum_probs=101.6
Q ss_pred CcchHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC----------------HHHHHHHHHHHhccCcHHHHHHHHHHch
Q 007400 383 NSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPD----------------KITLAVILNACTHSGLVQEGLTYFESMT 446 (605)
Q Consensus 383 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~----------------~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 446 (605)
+...|..+...+.+.|++++|+..|++.++. .|+ ..++..+..++.+.|++++|+..++++.
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al 223 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSW--LEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKAL 223 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--TTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--hhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3446677777788888888888888888773 444 3688888889999999999999999888
Q ss_pred HhhCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHH-HHHHHHHHhc
Q 007400 447 HDLGIIPN-QEHHACLIELLAQAGCSDQLMNQLEKMP--YEHDSYLWNALHGVCRIHGNIDMG-RKVVDQLIDQ 516 (605)
Q Consensus 447 ~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A-~~~~~~~~~~ 516 (605)
. +.|+ ...+..+..+|...|++++|+..|++.. .+.+..++..+..++...|++++| ...|++++..
T Consensus 224 ~---~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 294 (336)
T 1p5q_A 224 E---LDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFER 294 (336)
T ss_dssp H---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred H---hCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 3454 7788889999999999999999998762 345677888888899999999888 5577777654
No 170
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.38 E-value=5.2e-06 Score=72.22 Aligned_cols=94 Identities=4% Similarity=-0.121 Sum_probs=74.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhCC--CCCC----------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 007400 457 HHACLIELLAQAGCSDQLMNQLEKMP--YEHD----------------SYLWNALHGVCRIHGNIDMGRKVVDQLIDQNP 518 (605)
Q Consensus 457 ~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~----------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 518 (605)
.+..+...+.+.|++++|...|++.. .+.+ ..++..++.++...|++++|+..++++++..|
T Consensus 40 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p 119 (198)
T 2fbn_A 40 DIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDK 119 (198)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc
Confidence 34445555555555555555555431 0111 36788899999999999999999999999999
Q ss_pred CCCchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 007400 519 QSSATHGLLSSIYSALGKGRLVEKVRQLINER 550 (605)
Q Consensus 519 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 550 (605)
++..++..++.+|...|++++|...+++..+.
T Consensus 120 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 151 (198)
T 2fbn_A 120 NNVKALYKLGVANMYFGFLEEAKENLYKAASL 151 (198)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 99999999999999999999999999998764
No 171
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.37 E-value=1.9e-05 Score=73.79 Aligned_cols=213 Identities=12% Similarity=0.108 Sum_probs=157.0
Q ss_pred cchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcC-ChHHHHHHHHhcCCC--CCcchHHHHHHHHHHc-C-CHHHHHH
Q 007400 331 VSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCG-CLNDGRQVFDLTDNK--ENSMLWNTMISALTQH-G-YDEQAIR 405 (605)
Q Consensus 331 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~--~~~~~~~~l~~~~~~~-g-~~~~a~~ 405 (605)
+..++|..++..++..+ +-+..+|+.--.++...| .++++++.++.+... -+..+|+-....+... + +++++++
T Consensus 68 e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~ 146 (349)
T 3q7a_A 68 EKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIE 146 (349)
T ss_dssp CCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHH
T ss_pred CCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHH
Confidence 44567889999999887 566777888777888888 599999999976532 2667788777777776 7 8999999
Q ss_pred HHHHHHHCCCCC-CHHHHHHHHHHHhccCcHH--------HHHHHHHHchHhhCCCC-CHHHHHHHHHHHHhcCC-----
Q 007400 406 LFHDMVRSSVKP-DKITLAVILNACTHSGLVQ--------EGLTYFESMTHDLGIIP-NQEHHACLIELLAQAGC----- 470 (605)
Q Consensus 406 ~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~--------~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~----- 470 (605)
+++++++. .| |..+|+.-..++.+.|.++ ++++.++++.. ..| |...|+....++.+.+.
T Consensus 147 ~~~k~L~~--dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~---~dp~N~SAW~~R~~lL~~l~~~~~~~ 221 (349)
T 3q7a_A 147 YIHGSLLP--DPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLR---VDGRNNSAWGWRWYLRVSRPGAETSS 221 (349)
T ss_dssp HHHHHTSS--CTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHTTSTTCCCCH
T ss_pred HHHHHHHh--CCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHhccccccch
Confidence 99999984 45 6667777666666666665 89999999983 244 57788888888888876
Q ss_pred --hHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCH--------------------HHHHHHHHHHHhcC------CCC
Q 007400 471 --SDQLMNQLEKM--PYEHDSYLWNALHGVCRIHGNI--------------------DMGRKVVDQLIDQN------PQS 520 (605)
Q Consensus 471 --~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~--------------------~~A~~~~~~~~~~~------p~~ 520 (605)
++++++.++++ ..+.|...|+.+...+...|+. ....+...+++... +.+
T Consensus 222 ~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 301 (349)
T 3q7a_A 222 RSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPV 301 (349)
T ss_dssp HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCC
T ss_pred HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCc
Confidence 67888888775 2456888999888888776653 23333333333222 346
Q ss_pred CchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 007400 521 SATHGLLSSIYSALGKGRLVEKVRQLINE 549 (605)
Q Consensus 521 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 549 (605)
+.++..|+++|...|+.++|.++++.+.+
T Consensus 302 ~~al~~l~d~~~~~~~~~~a~~~~~~l~~ 330 (349)
T 3q7a_A 302 PLALEYLADSFIEQNRVDDAAKVFEKLSS 330 (349)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 67788999999999999999999999864
No 172
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.36 E-value=1.2e-06 Score=69.06 Aligned_cols=95 Identities=15% Similarity=0.010 Sum_probs=55.2
Q ss_pred HHHHHHhccCcHHHHHHHHHHchHhhCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhc
Q 007400 424 VILNACTHSGLVQEGLTYFESMTHDLGIIP-NQEHHACLIELLAQAGCSDQLMNQLEKMP--YEHDSYLWNALHGVCRIH 500 (605)
Q Consensus 424 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~ 500 (605)
.+...+...|++++|...++++. ...| +...+..+..++.+.|++++|+..+++.. .+.+...+..++.++...
T Consensus 22 ~~g~~~~~~g~~~~A~~~~~~al---~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 22 EEGLSMLKLANLAEAALAFEAVC---QKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHH---HHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHH---HHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 34444555555555555555555 1233 24555555666666666666666665541 234566777778888888
Q ss_pred CCHHHHHHHHHHHHhcCCCCC
Q 007400 501 GNIDMGRKVVDQLIDQNPQSS 521 (605)
Q Consensus 501 g~~~~A~~~~~~~~~~~p~~~ 521 (605)
|++++|+..++++++..|++.
T Consensus 99 g~~~~A~~~~~~al~~~P~~~ 119 (121)
T 1hxi_A 99 HNANAALASLRAWLLSQPQYE 119 (121)
T ss_dssp HHHHHHHHHHHHHHC------
T ss_pred CCHHHHHHHHHHHHHhCcCCC
Confidence 888888888888888887543
No 173
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.36 E-value=5.7e-05 Score=70.24 Aligned_cols=162 Identities=9% Similarity=0.021 Sum_probs=94.3
Q ss_pred CcchHHHHHHHHHHcC--CHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCc-HHHHHHHHHHchHhhCCCC-CHHH
Q 007400 383 NSMLWNTMISALTQHG--YDEQAIRLFHDMVRSSVKP-DKITLAVILNACTHSGL-VQEGLTYFESMTHDLGIIP-NQEH 457 (605)
Q Consensus 383 ~~~~~~~l~~~~~~~g--~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~-~~~a~~~~~~~~~~~~~~p-~~~~ 457 (605)
+..+|+--...+...| .+++++.++.++.+. .| |..+|+.-..++...|. ++++++.++++... .| |...
T Consensus 107 ny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~--dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~---~p~N~SA 181 (331)
T 3dss_A 107 SYGTWHHRCWLLSRLPEPNWARELELCARFLEA--DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITR---NFSNYSS 181 (331)
T ss_dssp CHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH---CSCCHHH
T ss_pred CHHHHHHHHHHHhccCcccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH---CCCCHHH
Confidence 4445555544555555 356666666666663 33 44455555555555555 46666666666621 23 3445
Q ss_pred HHHHHHHHHhc--------------CChHHHHHHHHhC--CCCCCHHHHHHHHHHHHhc-----------CCHHHHHHHH
Q 007400 458 HACLIELLAQA--------------GCSDQLMNQLEKM--PYEHDSYLWNALHGVCRIH-----------GNIDMGRKVV 510 (605)
Q Consensus 458 ~~~l~~~~~~~--------------g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~-----------g~~~~A~~~~ 510 (605)
|+....++.+. +.++++++.+.+. ..+.|..+|+.+-..+... +.++++++.+
T Consensus 182 W~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~ 261 (331)
T 3dss_A 182 WHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESC 261 (331)
T ss_dssp HHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHH
Confidence 55555444443 3456666666654 1345666776655555444 4578888888
Q ss_pred HHHHhcCCCCCchHHHHHHHHH---hcCCchHHHHHHHHHHh
Q 007400 511 DQLIDQNPQSSATHGLLSSIYS---ALGKGRLVEKVRQLINE 549 (605)
Q Consensus 511 ~~~~~~~p~~~~~~~~l~~~~~---~~g~~~~a~~~~~~~~~ 549 (605)
+++++..|++..++..++.+.. ..|..++....++++.+
T Consensus 262 ~elle~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 303 (331)
T 3dss_A 262 KELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKA 303 (331)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHH
T ss_pred HHHHhhCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHH
Confidence 8888888887555554443322 35667777888887765
No 174
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.36 E-value=3.4e-07 Score=71.91 Aligned_cols=63 Identities=16% Similarity=0.126 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 007400 487 SYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINE 549 (605)
Q Consensus 487 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 549 (605)
..++..++.++...|++++|+..|+++++..|+++.++..++.++...|++++|+..+++..+
T Consensus 27 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 89 (117)
T 3k9i_A 27 AECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVELLLKIIA 89 (117)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344555566666666666666666666666666666666666666666666666666665544
No 175
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.36 E-value=6.4e-07 Score=85.34 Aligned_cols=146 Identities=12% Similarity=0.014 Sum_probs=80.1
Q ss_pred chHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHchHhhCCCCCHHHHHHHHHH
Q 007400 385 MLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIEL 464 (605)
Q Consensus 385 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~ 464 (605)
..+..+...+.+.|++++|+..|++.+. +.|+... +...|+.+++...+. ...+..+..+
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~--~~p~~~~-------~~~~~~~~~~~~~l~-----------~~~~~nla~~ 239 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIA--YMGDDFM-------FQLYGKYQDMALAVK-----------NPCHLNIAAC 239 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHH--HSCHHHH-------HTCCHHHHHHHHHHH-----------THHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH--Hhccchh-------hhhcccHHHHHHHHH-----------HHHHHHHHHH
Confidence 3455566667777888888888887776 3454332 233344444433221 1367888899
Q ss_pred HHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHH-hcCCchHHH
Q 007400 465 LAQAGCSDQLMNQLEKMP--YEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYS-ALGKGRLVE 541 (605)
Q Consensus 465 ~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~-~~g~~~~a~ 541 (605)
|.+.|++++|+..+++.. .+.+...|..++.+|...|++++|+..|++++++.|++..++..++.+.. ..+..+++.
T Consensus 240 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~ 319 (338)
T 2if4_A 240 LIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQK 319 (338)
T ss_dssp HHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------------
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999998762 34578889999999999999999999999999999999999988888844 456677788
Q ss_pred HHHHHHHhC
Q 007400 542 KVRQLINER 550 (605)
Q Consensus 542 ~~~~~~~~~ 550 (605)
..|+.+...
T Consensus 320 ~~~~~~l~~ 328 (338)
T 2if4_A 320 EMYKGIFKG 328 (338)
T ss_dssp ---------
T ss_pred HHHHHhhCC
Confidence 888877654
No 176
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.36 E-value=1.7e-06 Score=69.16 Aligned_cols=96 Identities=9% Similarity=-0.005 Sum_probs=81.0
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-------CchHH
Q 007400 455 QEHHACLIELLAQAGCSDQLMNQLEKMP--YEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQS-------SATHG 525 (605)
Q Consensus 455 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~-------~~~~~ 525 (605)
...+..++..+...|++++|...+++.. .+.+..++..++..+...|++++|...++++++..|++ ..++.
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 3456777788888888888888887752 34567888889999999999999999999999997766 77889
Q ss_pred HHHHHHHhcCCchHHHHHHHHHHhC
Q 007400 526 LLSSIYSALGKGRLVEKVRQLINER 550 (605)
Q Consensus 526 ~l~~~~~~~g~~~~a~~~~~~~~~~ 550 (605)
.++.++...|++++|...++++.+.
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHh
Confidence 9999999999999999999988763
No 177
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.35 E-value=2e-06 Score=82.86 Aligned_cols=89 Identities=7% Similarity=-0.085 Sum_probs=78.4
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 007400 455 QEHHACLIELLAQAGCSDQLMNQLEKM-P-YEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYS 532 (605)
Q Consensus 455 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 532 (605)
...+..+..+|.+.|++++|++.+++. . .+.+...|..++.++...|++++|+..|++++++.|++...+..++.++.
T Consensus 273 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~ 352 (370)
T 1ihg_A 273 LSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQ 352 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 568888999999999999999999886 2 23468889999999999999999999999999999999999999999999
Q ss_pred hcCCchHHHHH
Q 007400 533 ALGKGRLVEKV 543 (605)
Q Consensus 533 ~~g~~~~a~~~ 543 (605)
..++.+++.+.
T Consensus 353 ~~~~~~~a~k~ 363 (370)
T 1ihg_A 353 KIKAQKDKEKA 363 (370)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHHH
Confidence 98888877653
No 178
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.34 E-value=4.2e-06 Score=66.84 Aligned_cols=107 Identities=13% Similarity=-0.019 Sum_probs=67.0
Q ss_pred HHHHHhccCcHHHHHHHHHHchHhhCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHhCC--CCCC---HHHHHHHHHHHH
Q 007400 425 ILNACTHSGLVQEGLTYFESMTHDLGIIPN-QEHHACLIELLAQAGCSDQLMNQLEKMP--YEHD---SYLWNALHGVCR 498 (605)
Q Consensus 425 l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~---~~~~~~l~~~~~ 498 (605)
+...+...|++++|...|+++.....-.+. ...+..++.++.+.|++++|...+++.. .+.+ ..++..++.++.
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~ 87 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQY 87 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHH
Confidence 344455556666666666665522111110 1355556666666666666666666541 1222 566777888889
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHH
Q 007400 499 IHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIY 531 (605)
Q Consensus 499 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 531 (605)
..|++++|...|+++++..|+++........+-
T Consensus 88 ~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~ 120 (129)
T 2xev_A 88 GEGKNTEAQQTLQQVATQYPGSDAARVAQERLQ 120 (129)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHCCCChHHHHHHHHHH
Confidence 999999999999999999997766655544443
No 179
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.32 E-value=1.5e-05 Score=79.08 Aligned_cols=162 Identities=5% Similarity=-0.151 Sum_probs=85.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCC-CCCCH----HHHHHHHHHHhccCcHHHHHHHHHHchHh---hCCCCC-HHH
Q 007400 387 WNTMISALTQHGYDEQAIRLFHDMVRSS-VKPDK----ITLAVILNACTHSGLVQEGLTYFESMTHD---LGIIPN-QEH 457 (605)
Q Consensus 387 ~~~l~~~~~~~g~~~~a~~~~~~m~~~~-~~p~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~p~-~~~ 457 (605)
+..++..|...|++++|.+.+.++...- ..++. .+.+.+...+...|+++.|..+++....- .+..+. ..+
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 137 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSL 137 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence 4455566666666666666665544310 01111 12223333344556666666666655421 122222 445
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhCC-------CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc---CCCC----Cc
Q 007400 458 HACLIELLAQAGCSDQLMNQLEKMP-------YEH-DSYLWNALHGVCRIHGNIDMGRKVVDQLIDQ---NPQS----SA 522 (605)
Q Consensus 458 ~~~l~~~~~~~g~~~~A~~~~~~~~-------~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~p~~----~~ 522 (605)
+..|+..|...|++++|..++++.. .++ ...++..++..|...|++++|..++++++.. .+++ ..
T Consensus 138 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 217 (434)
T 4b4t_Q 138 SIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAE 217 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHH
Confidence 6666666777777777766665431 111 1345556666677777777777777766654 2211 13
Q ss_pred hHHHHHHHHHhcCCchHHHHHHHHHH
Q 007400 523 THGLLSSIYSALGKGRLVEKVRQLIN 548 (605)
Q Consensus 523 ~~~~l~~~~~~~g~~~~a~~~~~~~~ 548 (605)
.+..++.++...|++++|...+....
T Consensus 218 ~~~~~g~~~~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 218 LDLMSGILHCEDKDYKTAFSYFFESF 243 (434)
T ss_dssp HHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 34455666666677777666655543
No 180
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.32 E-value=1.4e-06 Score=73.11 Aligned_cols=78 Identities=8% Similarity=-0.010 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC-chHHHHHHHH
Q 007400 455 QEHHACLIELLAQAGCSDQLMNQLEKMP--YEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSS-ATHGLLSSIY 531 (605)
Q Consensus 455 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~-~~~~~l~~~~ 531 (605)
...+..+..+|.+.|++++|+..+++.. .+.+...|..++.++...|++++|...|+++++++|+++ .....+..+.
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~ 142 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVT 142 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 4678888889999999999999888762 345788999999999999999999999999999999887 4455555554
Q ss_pred H
Q 007400 532 S 532 (605)
Q Consensus 532 ~ 532 (605)
.
T Consensus 143 ~ 143 (162)
T 3rkv_A 143 E 143 (162)
T ss_dssp H
T ss_pred H
Confidence 3
No 181
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.31 E-value=4e-06 Score=77.48 Aligned_cols=112 Identities=7% Similarity=-0.137 Sum_probs=90.9
Q ss_pred CHHHHHHHHHHHhccCcHHHHHHHHHHchHhhCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHhC-C-CCCCHHHHHHHH
Q 007400 418 DKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIP-NQEHHACLIELLAQAGCSDQLMNQLEKM-P-YEHDSYLWNALH 494 (605)
Q Consensus 418 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~~~~~~~~~l~ 494 (605)
+...+..+...+...|++++|...|+++.. ..| +...+..+..+|.+.|++++|...+++. . .+.+...+..++
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg 79 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAIT---RNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG 79 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 456788888899999999999999999883 355 4778899999999999999999999885 2 345678888999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 007400 495 GVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYS 532 (605)
Q Consensus 495 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 532 (605)
.++...|++++|...|++++++.|++...+...++...
T Consensus 80 ~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~ 117 (281)
T 2c2l_A 80 QCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSAL 117 (281)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHH
Confidence 99999999999999999999998877554444444333
No 182
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.30 E-value=2.5e-06 Score=71.16 Aligned_cols=129 Identities=11% Similarity=-0.010 Sum_probs=79.9
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHchHhhCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHhCC----CCCC----HH
Q 007400 421 TLAVILNACTHSGLVQEGLTYFESMTHDLGIIPN----QEHHACLIELLAQAGCSDQLMNQLEKMP----YEHD----SY 488 (605)
Q Consensus 421 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~----~~ 488 (605)
++..+...+...|++++|...+++......-.++ ..++..+...+...|++++|.+.+++.. ..++ ..
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 3444444555555555555555554421100011 1355566666666677666666665531 0111 34
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC------CCchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 007400 489 LWNALHGVCRIHGNIDMGRKVVDQLIDQNPQ------SSATHGLLSSIYSALGKGRLVEKVRQLINE 549 (605)
Q Consensus 489 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 549 (605)
++..++..+...|++++|...++++++..+. ....+..++.++...|++++|...+++..+
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 5667778888888999999988888876221 235677889999999999999998887754
No 183
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.29 E-value=1e-06 Score=69.18 Aligned_cols=91 Identities=14% Similarity=0.129 Sum_probs=67.5
Q ss_pred cCcHHHHHHHHHHchHhhCC---CCC-HHHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHH
Q 007400 432 SGLVQEGLTYFESMTHDLGI---IPN-QEHHACLIELLAQAGCSDQLMNQLEKMP--YEHDSYLWNALHGVCRIHGNIDM 505 (605)
Q Consensus 432 ~g~~~~a~~~~~~~~~~~~~---~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~ 505 (605)
.|++++|+..|+++. .. .|+ ...+..+..+|...|++++|+..+++.. .+.+..++..++.++...|++++
T Consensus 3 ~g~~~~A~~~~~~al---~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~ 79 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAI---ASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQ 79 (117)
T ss_dssp ----CCCHHHHHHHH---SSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHH
T ss_pred CCcHHHHHHHHHHHH---HcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHH
Confidence 466777777777777 33 243 5677778888888888888888887752 34567888889999999999999
Q ss_pred HHHHHHHHHhcCCCCCchHH
Q 007400 506 GRKVVDQLIDQNPQSSATHG 525 (605)
Q Consensus 506 A~~~~~~~~~~~p~~~~~~~ 525 (605)
|+..++++++..|+++....
T Consensus 80 A~~~~~~al~~~p~~~~~~~ 99 (117)
T 3k9i_A 80 GVELLLKIIAETSDDETIQS 99 (117)
T ss_dssp HHHHHHHHHHHHCCCHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHH
Confidence 99999999999997765543
No 184
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.28 E-value=1.3e-06 Score=70.95 Aligned_cols=75 Identities=16% Similarity=0.132 Sum_probs=55.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhC--------CCCCC-HHHH----HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCch
Q 007400 457 HHACLIELLAQAGCSDQLMNQLEKM--------PYEHD-SYLW----NALHGVCRIHGNIDMGRKVVDQLIDQNPQSSAT 523 (605)
Q Consensus 457 ~~~~l~~~~~~~g~~~~A~~~~~~~--------~~~~~-~~~~----~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 523 (605)
.|..+..++.+.|++++|+..+++. ...|+ ...| ...+.++...|++++|+..|++++++.|++...
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~ 138 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGE 138 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHH
Confidence 5666666666666666666655543 12454 5678 899999999999999999999999999988877
Q ss_pred HHHHHHHH
Q 007400 524 HGLLSSIY 531 (605)
Q Consensus 524 ~~~l~~~~ 531 (605)
+..+..+-
T Consensus 139 ~~~~~~~~ 146 (159)
T 2hr2_A 139 TPGKERMM 146 (159)
T ss_dssp CTTHHHHH
T ss_pred HHHHHHHH
Confidence 66555543
No 185
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.28 E-value=2.6e-06 Score=68.11 Aligned_cols=111 Identities=7% Similarity=-0.037 Sum_probs=66.6
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHchHhhCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhCC-----CCCC----HHHHH
Q 007400 421 TLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMP-----YEHD----SYLWN 491 (605)
Q Consensus 421 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~----~~~~~ 491 (605)
.+..+...+...|+++.|...++++... .+.+...+..++..+...|++++|...+++.. ..++ ..++.
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKEL--DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 3444444445555555555555554411 11124445555555555555555555555431 1122 56677
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhc
Q 007400 492 ALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSAL 534 (605)
Q Consensus 492 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 534 (605)
.++.++...|++++|...|+++++..| ++.....+..+....
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~ 125 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKIL 125 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHH
Confidence 788888899999999999999999888 677777776665543
No 186
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.26 E-value=3.9e-06 Score=64.83 Aligned_cols=100 Identities=10% Similarity=-0.018 Sum_probs=65.7
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHchHhhCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhCC--CCC--CHHHHHHHHH
Q 007400 420 ITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMP--YEH--DSYLWNALHG 495 (605)
Q Consensus 420 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~--~~~~~~~l~~ 495 (605)
..+..+...+...|++++|...++++... .+.+...+..+..++...|++++|...+++.. .+. +..++..++.
T Consensus 7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 7 EEYYLEGVLQYDAGNYTESIDLFEKAIQL--DPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKAD 84 (112)
T ss_dssp TGGGGHHHHHHSSCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHH
Confidence 34555555666666666666666666522 11234556666666777777777777666541 223 5677788888
Q ss_pred HHHhc-CCHHHHHHHHHHHHhcCCCCC
Q 007400 496 VCRIH-GNIDMGRKVVDQLIDQNPQSS 521 (605)
Q Consensus 496 ~~~~~-g~~~~A~~~~~~~~~~~p~~~ 521 (605)
++... |++++|.+.++++++..|.++
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHHHHhCCHHHHHHHHHHHhhcccCCC
Confidence 88888 888888888888888887553
No 187
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.25 E-value=0.00033 Score=65.13 Aligned_cols=231 Identities=11% Similarity=0.019 Sum_probs=152.2
Q ss_pred HhCCChH-HHHHHHHHHHHCCCCCChHH-HHHHHHHHhcccc----------hHHHHHHHHHHHHcCCCCChhHHHHHHH
Q 007400 293 TRNGLGQ-KALELFTRMMILRIRPNQHT-FSSCLCACASIVS----------LKHGKQVHGFLIRTNFRSNTIVMSSLID 360 (605)
Q Consensus 293 ~~~g~~~-~a~~~~~~m~~~g~~p~~~~-~~~ll~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 360 (605)
.+.|.++ +|+.++..+... .|+..| ++.--..+...+. ++++..++..+...+ +-+..+|+.-.-
T Consensus 40 ~~~~e~s~eaL~~t~~~L~~--nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~hR~w 116 (331)
T 3dss_A 40 RQAGELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCW 116 (331)
T ss_dssp HHTTCCSHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 3455554 678888887764 454433 3332222222222 567778888888766 566777777666
Q ss_pred HHHhcC--ChHHHHHHHHhcCC--CCCcchHHHHHHHHHHcCC-HHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhcc--
Q 007400 361 MYSKCG--CLNDGRQVFDLTDN--KENSMLWNTMISALTQHGY-DEQAIRLFHDMVRSSVKP-DKITLAVILNACTHS-- 432 (605)
Q Consensus 361 ~~~~~g--~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~-~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~-- 432 (605)
++.+.| .+++++.+++.+.. +-|..+|+--.-.+...|. ++++++.+.++++. .| |...|+.....+...
T Consensus 117 lL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~--~p~N~SAW~~R~~ll~~l~~ 194 (331)
T 3dss_A 117 LLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITR--NFSNYSSWHYRSCLLPQLHP 194 (331)
T ss_dssp HHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHHSC
T ss_pred HHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHhhh
Confidence 677777 47888888887652 2267777777777777887 58999999999985 44 555666655554443
Q ss_pred ------------CcHHHHHHHHHHchHhhCCCCC-HHHHHHHHHHHHhc-----------CChHHHHHHHHhC-CCCCC-
Q 007400 433 ------------GLVQEGLTYFESMTHDLGIIPN-QEHHACLIELLAQA-----------GCSDQLMNQLEKM-PYEHD- 486 (605)
Q Consensus 433 ------------g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~-----------g~~~~A~~~~~~~-~~~~~- 486 (605)
+.++++++.+.... ...|+ ...|+.+-..+.+. +.++++++.++++ ...||
T Consensus 195 ~~~~~~~~~~~~~~~~eEle~~~~ai---~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~ 271 (331)
T 3dss_A 195 QPDSGPQGRLPENVLLKELELVQNAF---FTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPEN 271 (331)
T ss_dssp CC------CCCHHHHHHHHHHHHHHH---HHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred ccccccccccchHHHHHHHHHHHHHH---HhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCccc
Confidence 56788999998888 33555 66776666666555 4567888888776 23344
Q ss_pred HHHHHHHHHH---HHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHH
Q 007400 487 SYLWNALHGV---CRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIY 531 (605)
Q Consensus 487 ~~~~~~l~~~---~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 531 (605)
...+..++.. ....|..++....+.++++++|....-|..+..-+
T Consensus 272 ~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~~~~ 319 (331)
T 3dss_A 272 KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKF 319 (331)
T ss_dssp HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred chHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHHHHHH
Confidence 3333332221 12357888999999999999998888777776554
No 188
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.25 E-value=5e-06 Score=62.92 Aligned_cols=67 Identities=18% Similarity=0.162 Sum_probs=61.9
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 007400 484 EHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINER 550 (605)
Q Consensus 484 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 550 (605)
+.+...+..++.++...|++++|+..|+++++.+|+++.+|..++.+|...|++++|+..+++..+.
T Consensus 4 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 4 PEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp -CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 4567889999999999999999999999999999999999999999999999999999999988753
No 189
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.23 E-value=5.4e-07 Score=69.86 Aligned_cols=93 Identities=10% Similarity=-0.012 Sum_probs=76.5
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC------CchHH
Q 007400 454 NQEHHACLIELLAQAGCSDQLMNQLEKMP--YEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQS------SATHG 525 (605)
Q Consensus 454 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~------~~~~~ 525 (605)
+...+..+...+.+.|++++|.+.+++.. .+.+...|..++.++...|++++|+..++++++..|++ ...+.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 45567777888888888888888887752 34578889999999999999999999999999999988 77788
Q ss_pred HHHHHHHhcCCchHHHHHHHH
Q 007400 526 LLSSIYSALGKGRLVEKVRQL 546 (605)
Q Consensus 526 ~l~~~~~~~g~~~~a~~~~~~ 546 (605)
.++.++...|+++.|...+++
T Consensus 83 ~~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 83 RLELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp HHHHHHHHHHCCCCCSSSSSS
T ss_pred HHHHHHHHHHhHhhhHhHHHH
Confidence 888888888888777665553
No 190
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.21 E-value=4.4e-05 Score=77.73 Aligned_cols=168 Identities=9% Similarity=-0.021 Sum_probs=133.3
Q ss_pred ChHHHHHHHHhcCC--CCCcchHHHHHHHHHHcCC----------HHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccC
Q 007400 367 CLNDGRQVFDLTDN--KENSMLWNTMISALTQHGY----------DEQAIRLFHDMVRSSVKP-DKITLAVILNACTHSG 433 (605)
Q Consensus 367 ~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~----------~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g 433 (605)
..++|.+.++.+.. +.+..+|+.-...+...|+ ++++++.++++.+. .| +..+|..-..++.+.|
T Consensus 44 ~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~--~pK~y~aW~hR~w~l~~l~ 121 (567)
T 1dce_A 44 LDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV--NPKSYGTWHHRCWLLSRLP 121 (567)
T ss_dssp CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTCS
T ss_pred CCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcc
Confidence 34566777776542 2255667776666666666 89999999999984 55 5668888888888888
Q ss_pred --cHHHHHHHHHHchHhhCCCC-CHHHHHHHHHHHHhcC-ChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhc-------
Q 007400 434 --LVQEGLTYFESMTHDLGIIP-NQEHHACLIELLAQAG-CSDQLMNQLEKMP--YEHDSYLWNALHGVCRIH------- 500 (605)
Q Consensus 434 --~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~------- 500 (605)
++++++..++++.+ ..| +...|+.-..++.+.| .++++++.++++- .+.+..+|+....++...
T Consensus 122 ~~~~~~el~~~~k~l~---~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~ 198 (567)
T 1dce_A 122 EPNWARELELCARFLE---ADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSG 198 (567)
T ss_dssp SCCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSS
T ss_pred cccHHHHHHHHHHHHh---hccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccccc
Confidence 77999999999983 344 4778888888888889 8999999998873 345788888887777653
Q ss_pred -------CCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchH
Q 007400 501 -------GNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRL 539 (605)
Q Consensus 501 -------g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 539 (605)
+.++++++.+++++..+|++..+|..+..++.+.|++++
T Consensus 199 ~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 199 PQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred ccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 568999999999999999999999999999999988655
No 191
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.17 E-value=9.6e-06 Score=67.54 Aligned_cols=132 Identities=12% Similarity=0.054 Sum_probs=88.5
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC-CCH----HHHHHHHHHHhccCcHHHHHHHHHHchHhhCCCCC----HH
Q 007400 386 LWNTMISALTQHGYDEQAIRLFHDMVRSSVK-PDK----ITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPN----QE 456 (605)
Q Consensus 386 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~-p~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~ 456 (605)
++..+...+...|++++|+..+++..+.... ++. .++..+...+...|++++|...+++......-.++ ..
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 4556666677777777777777766542100 111 36666777777888888888888776532111111 44
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhCC----CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 007400 457 HHACLIELLAQAGCSDQLMNQLEKMP----YEHD----SYLWNALHGVCRIHGNIDMGRKVVDQLIDQN 517 (605)
Q Consensus 457 ~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 517 (605)
.+..+...+...|++++|.+.+++.. ...+ ..++..++..+...|++++|.+.++++++..
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 159 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS 159 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 66777788888888888888776641 0111 3456778888999999999999999998863
No 192
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.15 E-value=3.2e-06 Score=80.44 Aligned_cols=151 Identities=10% Similarity=0.016 Sum_probs=79.3
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhcCC-CCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 007400 352 TIVMSSLIDMYSKCGCLNDGRQVFDLTDN-KENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACT 430 (605)
Q Consensus 352 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~ 430 (605)
...+..+...+.+.|++++|...|+.... .|+... +...|+.+++...+. ...+..+..++.
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~~~ 241 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAACLI 241 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHHHH
Confidence 34567788889999999999999987543 222221 222333333332221 136778888888
Q ss_pred ccCcHHHHHHHHHHchHhhCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHH-HHhcCCHHHH
Q 007400 431 HSGLVQEGLTYFESMTHDLGIIP-NQEHHACLIELLAQAGCSDQLMNQLEKMP-YEH-DSYLWNALHGV-CRIHGNIDMG 506 (605)
Q Consensus 431 ~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~-~~~~g~~~~A 506 (605)
+.|++++|+..++++.. +.| +...+..+..+|...|++++|...|++.. ..| +..++..+... ....+..+.+
T Consensus 242 ~~g~~~~A~~~~~~al~---~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a 318 (338)
T 2if4_A 242 KLKRYDEAIGHCNIVLT---EEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQ 318 (338)
T ss_dssp TTTCCHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998882 345 47788889999999999999999998873 333 44555555555 3445678889
Q ss_pred HHHHHHHHhcCCCCCc
Q 007400 507 RKVVDQLIDQNPQSSA 522 (605)
Q Consensus 507 ~~~~~~~~~~~p~~~~ 522 (605)
...|++++...|.++.
T Consensus 319 ~~~~~~~l~~~p~~~~ 334 (338)
T 2if4_A 319 KEMYKGIFKGKDEGGA 334 (338)
T ss_dssp ----------------
T ss_pred HHHHHHhhCCCCCCCC
Confidence 9999999999886543
No 193
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.15 E-value=1.7e-05 Score=79.02 Aligned_cols=65 Identities=5% Similarity=-0.142 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 007400 487 SYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQ 551 (605)
Q Consensus 487 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 551 (605)
..+|..++.++.+.|++++|+..++++++++|++..++..++.+|...|++++|+..|+++.+..
T Consensus 317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~ 381 (457)
T 1kt0_A 317 LAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN 381 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 57888899999999999999999999999999999999999999999999999999999998753
No 194
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.14 E-value=1.3e-05 Score=77.16 Aligned_cols=113 Identities=7% Similarity=-0.085 Sum_probs=83.5
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHchHhhCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 007400 420 ITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRI 499 (605)
Q Consensus 420 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~ 499 (605)
..+..+...+.+.|++++|+..|+++.+. .+.. ......+++.. . .+.+..+|..++.++.+
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~---~~~~----------~~~~~~~~~~~----~-~~~~~~~~~nla~~~~~ 285 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRY---VEGS----------RAAAEDADGAK----L-QPVALSCVLNIGACKLK 285 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH---HHHH----------HHHSCHHHHGG----G-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHH---hhcC----------ccccChHHHHH----H-HHHHHHHHHHHHHHHHh
Confidence 45666777777777888888777777621 0100 00001111110 1 12345688889999999
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 007400 500 HGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINER 550 (605)
Q Consensus 500 ~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 550 (605)
.|++++|+..++++++.+|+++.++..++.+|...|++++|+..++++.+.
T Consensus 286 ~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l 336 (370)
T 1ihg_A 286 MSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEI 336 (370)
T ss_dssp TTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999998764
No 195
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.12 E-value=1.5e-05 Score=58.81 Aligned_cols=81 Identities=15% Similarity=0.191 Sum_probs=65.3
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 007400 455 QEHHACLIELLAQAGCSDQLMNQLEKMP--YEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYS 532 (605)
Q Consensus 455 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 532 (605)
...+..+...+...|++++|...+++.. .+.+..++..++.++...|++++|...++++++..|+++..+..++.++.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 88 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 88 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 4566677777888888888888877652 23467788888889999999999999999999999988899988988887
Q ss_pred hcC
Q 007400 533 ALG 535 (605)
Q Consensus 533 ~~g 535 (605)
+.|
T Consensus 89 ~~g 91 (91)
T 1na3_A 89 KQG 91 (91)
T ss_dssp HHC
T ss_pred hcC
Confidence 654
No 196
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.11 E-value=3.2e-05 Score=57.03 Aligned_cols=69 Identities=10% Similarity=-0.057 Sum_probs=61.8
Q ss_pred CCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCCC
Q 007400 484 EHDSYLWNALHGVCRIHGN---IDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQF 552 (605)
Q Consensus 484 ~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 552 (605)
+.++..+..++.++...++ .++|..+++++++.+|++..+...++..+.+.|++++|+.+|+++.+...
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p 74 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSND 74 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 4678888888888876555 79999999999999999999999999999999999999999999987643
No 197
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.10 E-value=4.4e-05 Score=75.63 Aligned_cols=159 Identities=10% Similarity=0.053 Sum_probs=117.8
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCC----------------HHHHHHHHHHHhccCcHHHHHHHHHHchHhhCCCCC
Q 007400 391 ISALTQHGYDEQAIRLFHDMVRSSVKPD----------------KITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPN 454 (605)
Q Consensus 391 ~~~~~~~g~~~~a~~~~~~m~~~~~~p~----------------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~ 454 (605)
...+...|++++|++.|.++.+...... ...+..++..|...|++++|..++..+....+..++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 3456677888888888888776422111 124778899999999999999999998754333333
Q ss_pred H----HHHHHHHHHHHhcCChHHHHHHHHhC-------CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc------
Q 007400 455 Q----EHHACLIELLAQAGCSDQLMNQLEKM-------PYEH-DSYLWNALHGVCRIHGNIDMGRKVVDQLIDQ------ 516 (605)
Q Consensus 455 ~----~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------ 516 (605)
. .+.+.+...+...|++++|..++++. ...+ -..++..++..+...|++++|..+++++...
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 2 23444555566788999999888764 2222 2567788999999999999999999999875
Q ss_pred CCCCCchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 007400 517 NPQSSATHGLLSSIYSALGKGRLVEKVRQLINE 549 (605)
Q Consensus 517 ~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 549 (605)
.|....++..++.+|...|++++|..++++...
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 203 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAART 203 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 222345788999999999999999999988754
No 198
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.07 E-value=1e-05 Score=63.00 Aligned_cols=77 Identities=16% Similarity=0.119 Sum_probs=62.6
Q ss_pred HHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 007400 474 LMNQLEKM-P-YEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINER 550 (605)
Q Consensus 474 A~~~~~~~-~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 550 (605)
|++.+++. . .+.+...+..++..+...|++++|+..|+++++..|++...+..++.+|...|++++|...+++..+.
T Consensus 4 a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 82 (115)
T 2kat_A 4 ITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAA 82 (115)
T ss_dssp HHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 44444443 1 23567788888889999999999999999999999988889999999999999999999999887653
No 199
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.06 E-value=9.4e-06 Score=80.57 Aligned_cols=123 Identities=11% Similarity=0.029 Sum_probs=91.7
Q ss_pred HhccCcHHHHHHHHHHchHhh--CC---CCC-HHHHHHHHHHHHhcCChHHHHHHHHhC--------C-CCCC-HHHHHH
Q 007400 429 CTHSGLVQEGLTYFESMTHDL--GI---IPN-QEHHACLIELLAQAGCSDQLMNQLEKM--------P-YEHD-SYLWNA 492 (605)
Q Consensus 429 ~~~~g~~~~a~~~~~~~~~~~--~~---~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~--------~-~~~~-~~~~~~ 492 (605)
+...|++++|..++++..... -+ .|+ ..+++.|+.+|...|++++|..++++. + ..|+ ..+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 456777888877777665322 11 233 457788888888888888888877764 1 2233 456788
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhc-----CCCCCc---hHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 007400 493 LHGVCRIHGNIDMGRKVVDQLIDQ-----NPQSSA---THGLLSSIYSALGKGRLVEKVRQLINERQ 551 (605)
Q Consensus 493 l~~~~~~~g~~~~A~~~~~~~~~~-----~p~~~~---~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 551 (605)
|+..|..+|++++|+.+++++++. .|+++. ....+..++...|++.+|+..++.+++.-
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999875 566654 44578889999999999999999987643
No 200
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.98 E-value=5.2e-06 Score=67.24 Aligned_cols=82 Identities=12% Similarity=0.062 Sum_probs=54.4
Q ss_pred CChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcC-
Q 007400 469 GCSDQLMNQLEKMP--YEHDSYLWNALHGVCRIHGN----------IDMGRKVVDQLIDQNPQSSATHGLLSSIYSALG- 535 (605)
Q Consensus 469 g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g- 535 (605)
+.+++|...+++.. .+.+...|..++.++...++ +++|+..|+++++++|++..+|..++.+|...|
T Consensus 16 ~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~ 95 (158)
T 1zu2_A 16 LLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAF 95 (158)
T ss_dssp HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcc
Confidence 34455555444431 22345555555555554443 468888888888888888888888888888764
Q ss_pred ----------CchHHHHHHHHHHhC
Q 007400 536 ----------KGRLVEKVRQLINER 550 (605)
Q Consensus 536 ----------~~~~a~~~~~~~~~~ 550 (605)
++++|+..|++..+.
T Consensus 96 l~P~~~~a~g~~~eA~~~~~kAl~l 120 (158)
T 1zu2_A 96 LTPDETEAKHNFDLATQFFQQAVDE 120 (158)
T ss_dssp HCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCcchhhhhccHHHHHHHHHHHHHh
Confidence 788888888887764
No 201
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.93 E-value=8.5e-05 Score=59.88 Aligned_cols=89 Identities=9% Similarity=-0.066 Sum_probs=48.7
Q ss_pred HHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHh---
Q 007400 461 LIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRI----HGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSA--- 533 (605)
Q Consensus 461 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~--- 533 (605)
|...|...+.+++|.+.|++.....++..+..++..|.. .+++++|+..|+++.+. .++.++..|+.+|..
T Consensus 31 lg~~y~~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g 108 (138)
T 1klx_A 31 LSLVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKG 108 (138)
T ss_dssp HHHHTCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSS
T ss_pred HHHHHHcCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHCCCC
Confidence 344444444444444444443222445555555555555 55666666666666655 245566666666666
Q ss_pred -cCCchHHHHHHHHHHhCC
Q 007400 534 -LGKGRLVEKVRQLINERQ 551 (605)
Q Consensus 534 -~g~~~~a~~~~~~~~~~~ 551 (605)
.+++++|...+++..+.|
T Consensus 109 ~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 109 VVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp SCCCHHHHHHHHHHHHHTT
T ss_pred CCcCHHHHHHHHHHHHHCC
Confidence 566666666666665554
No 202
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.89 E-value=4.3e-05 Score=58.82 Aligned_cols=65 Identities=15% Similarity=-0.030 Sum_probs=61.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 007400 486 DSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINER 550 (605)
Q Consensus 486 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 550 (605)
+...+..++..+...|++++|+..|+++++..|+++..+..++.++...|++++|+..+++..+.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 67 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY 67 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 45678889999999999999999999999999999999999999999999999999999998864
No 203
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=97.86 E-value=8.8e-05 Score=59.31 Aligned_cols=91 Identities=10% Similarity=-0.024 Sum_probs=60.2
Q ss_pred CCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhcC-C-CCCchHHHHHHHHHhcCCchHHHHHHHHHHhCCCcCCCce
Q 007400 484 EHDSYLWNALHGVCRIHG---NIDMGRKVVDQLIDQN-P-QSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAI 558 (605)
Q Consensus 484 ~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 558 (605)
+++..+...+++++.+.+ ++++++.+++.+++.+ | ++...++.|+-+|.+.|++++|.++++.+.+.
T Consensus 29 ~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~i-------- 100 (152)
T 1pc2_A 29 SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQT-------- 100 (152)
T ss_dssp CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH--------
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhc--------
Confidence 356666666777777666 5557777777777776 5 45667777777777777777777777777652
Q ss_pred eEEEECCEEEEEEeCCCCCcchHHHHHHHHHHHHHHhhCCCC
Q 007400 559 SWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQMGEDAPS 600 (605)
Q Consensus 559 s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 600 (605)
.|+..++....+.+.++++++|.+
T Consensus 101 ------------------eP~n~QA~~Lk~~ie~~~~kdgl~ 124 (152)
T 1pc2_A 101 ------------------EPQNNQAKELERLIDKAMKKDGLV 124 (152)
T ss_dssp ------------------CTTCHHHHHHHHHHHHHHHHTTCC
T ss_pred ------------------CCCCHHHHHHHHHHHHHHHHhhHH
Confidence 455555555556666666666643
No 204
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.82 E-value=2.4e-05 Score=77.70 Aligned_cols=116 Identities=8% Similarity=-0.031 Sum_probs=89.8
Q ss_pred HHHHhcCChHHHHHHHHhCC---------CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-----CCCC---CchH
Q 007400 463 ELLAQAGCSDQLMNQLEKMP---------YEHD-SYLWNALHGVCRIHGNIDMGRKVVDQLIDQ-----NPQS---SATH 524 (605)
Q Consensus 463 ~~~~~~g~~~~A~~~~~~~~---------~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~p~~---~~~~ 524 (605)
..+..+|++++|+.++++.. ..|+ ..+++.|+.+|..+|++++|+.+++++++. .|++ ..++
T Consensus 317 ~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l 396 (490)
T 3n71_A 317 DKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAV 396 (490)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 34668899999999887641 1222 457888999999999999999999999875 4444 4677
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHHhCCCcCCCceeEEEECCEEEEEEeCCCCCcchHHHHHHHHHHHHHHhh
Q 007400 525 GLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQMGE 596 (605)
Q Consensus 525 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 596 (605)
..|+.+|..+|++++|+.++++..+-... .. ...||...++..+|.++..+++.
T Consensus 397 ~nLa~~~~~~G~~~eA~~~~~~Al~i~~~-----------------~l-G~~Hp~~~~~~~~l~~~~~e~~~ 450 (490)
T 3n71_A 397 MRAGLTNWHAGHIEVGHGMICKAYAILLV-----------------TH-GPSHPITKDLEAMRMQTEMELRM 450 (490)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHH-----------------HT-CTTSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHH-----------------Hh-CCCChHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999988653110 11 23699999999988888876654
No 205
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.82 E-value=0.00013 Score=53.60 Aligned_cols=65 Identities=15% Similarity=0.159 Sum_probs=60.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 007400 486 DSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINER 550 (605)
Q Consensus 486 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 550 (605)
+...+..++..+...|++++|+..++++++..|+++..+..++.++...|++++|...+++..+.
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 72 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 72 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 35678888999999999999999999999999999999999999999999999999999998764
No 206
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.80 E-value=2.3e-05 Score=63.51 Aligned_cols=123 Identities=17% Similarity=0.136 Sum_probs=66.1
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCcH----------HHHHHHHHHchHhhCCCCC-HHHHHHHH
Q 007400 395 TQHGYDEQAIRLFHDMVRSSVKP-DKITLAVILNACTHSGLV----------QEGLTYFESMTHDLGIIPN-QEHHACLI 462 (605)
Q Consensus 395 ~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~----------~~a~~~~~~~~~~~~~~p~-~~~~~~l~ 462 (605)
.+.+.+++|++.+++.++ +.| +...+..+..++...+++ ++|+..|++.. .+.|+ ...|..+.
T Consensus 13 ~r~~~feeA~~~~~~Ai~--l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL---~ldP~~~~A~~~LG 87 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYK--SNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEAL---LIDPKKDEAVWCIG 87 (158)
T ss_dssp HHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHH---HHCTTCHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHH---HhCcCcHHHHHHHH
Confidence 445556666666666666 344 445666666666665543 24555555444 23343 33444444
Q ss_pred HHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHH
Q 007400 463 ELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEK 542 (605)
Q Consensus 463 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 542 (605)
.+|...|.+ .|+.. ...|++++|+..|+++++++|++......+- ..++|.+
T Consensus 88 ~ay~~lg~l------------~P~~~---------~a~g~~~eA~~~~~kAl~l~P~~~~y~~al~-------~~~ka~e 139 (158)
T 1zu2_A 88 NAYTSFAFL------------TPDET---------EAKHNFDLATQFFQQAVDEQPDNTHYLKSLE-------MTAKAPQ 139 (158)
T ss_dssp HHHHHHHHH------------CCCHH---------HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHH-------HHHTHHH
T ss_pred HHHHHhccc------------Ccchh---------hhhccHHHHHHHHHHHHHhCCCCHHHHHHHH-------HHHhCHh
Confidence 444443332 12211 0126899999999999999997643322222 2245555
Q ss_pred HHHHHHhC
Q 007400 543 VRQLINER 550 (605)
Q Consensus 543 ~~~~~~~~ 550 (605)
+.-.+...
T Consensus 140 l~~~~~~~ 147 (158)
T 1zu2_A 140 LHAEAYKQ 147 (158)
T ss_dssp HHHHHHHS
T ss_pred ccCccccc
Confidence 55555444
No 207
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.75 E-value=0.00026 Score=72.10 Aligned_cols=148 Identities=16% Similarity=0.079 Sum_probs=122.8
Q ss_pred CCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCc----------HHHHHHHHHHchHhhCCCCC-HHHHHHHHHHH
Q 007400 398 GYDEQAIRLFHDMVRSSVKPDK-ITLAVILNACTHSGL----------VQEGLTYFESMTHDLGIIPN-QEHHACLIELL 465 (605)
Q Consensus 398 g~~~~a~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~g~----------~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~ 465 (605)
...++|++.+++++. +.|+. .+|+.-..++...|+ +++++..++.+.+ ..|. ..+|..-..++
T Consensus 43 ~~~eeal~~~~~~l~--~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~---~~pK~y~aW~hR~w~l 117 (567)
T 1dce_A 43 ELDESVLELTSQILG--ANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLR---VNPKSYGTWHHRCWLL 117 (567)
T ss_dssp CCSHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHH---HCTTCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH--HCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHH---hCCCCHHHHHHHHHHH
Confidence 345688999999999 56754 577776667766666 8999999999983 3454 77888888999
Q ss_pred HhcC--ChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhc------
Q 007400 466 AQAG--CSDQLMNQLEKMP--YEHDSYLWNALHGVCRIHG-NIDMGRKVVDQLIDQNPQSSATHGLLSSIYSAL------ 534 (605)
Q Consensus 466 ~~~g--~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~------ 534 (605)
.+.| +++++++.++++- .+.+..+|+.-..++...| .++++++.++++++.+|.|..+|...+.++.+.
T Consensus 118 ~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~ 197 (567)
T 1dce_A 118 SRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDS 197 (567)
T ss_dssp HTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCS
T ss_pred HHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccc
Confidence 9999 6799999999872 4568889999888888889 899999999999999999999999999999885
Q ss_pred --------CCchHHHHHHHHHHhC
Q 007400 535 --------GKGRLVEKVRQLINER 550 (605)
Q Consensus 535 --------g~~~~a~~~~~~~~~~ 550 (605)
+.++++.+.++.+...
T Consensus 198 ~~~~~~~~~~~~eel~~~~~ai~~ 221 (567)
T 1dce_A 198 GPQGRLPENVLLKELELVQNAFFT 221 (567)
T ss_dssp SSCCSSCHHHHHHHHHHHHHHHHH
T ss_pred cccccccHHHHHHHHHHHHHHHhh
Confidence 5568888888777654
No 208
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.75 E-value=0.00023 Score=69.51 Aligned_cols=117 Identities=11% Similarity=0.012 Sum_probs=90.1
Q ss_pred HHHHHhcCChHHHHHHHHhCC------CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-----CCCC---Cch
Q 007400 462 IELLAQAGCSDQLMNQLEKMP------YEHD----SYLWNALHGVCRIHGNIDMGRKVVDQLIDQ-----NPQS---SAT 523 (605)
Q Consensus 462 ~~~~~~~g~~~~A~~~~~~~~------~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~p~~---~~~ 523 (605)
+.-+.+.|++++|+.++++.. ..|+ ..+++.++.+|..+|++++|+.+++++++. .|++ ...
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 344667889999998887641 1222 457888999999999999999999999875 3443 457
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHhCCCcCCCceeEEEECCEEEEEEeCCCCCcchHHHHHHHHHHHHHHhh
Q 007400 524 HGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQMGE 596 (605)
Q Consensus 524 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 596 (605)
+..|+.+|..+|++++|+.++++..+--. ..-...||...+++..|++....|+.
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~i~~------------------~~lG~~Hp~~~~~~~~l~~~~~e~~~ 428 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFDIMR------------------VTHGREHSLIEDLILLLEECDANIRA 428 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHH------------------HHTCTTSHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHH------------------HhcCCCChHHHHHHHHHHHHHHHHhc
Confidence 78999999999999999999998865211 01123699999999999999988864
No 209
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.74 E-value=0.00012 Score=56.82 Aligned_cols=79 Identities=14% Similarity=0.024 Sum_probs=56.1
Q ss_pred HHHHHHHchHhhCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007400 438 GLTYFESMTHDLGIIPN-QEHHACLIELLAQAGCSDQLMNQLEKMP--YEHDSYLWNALHGVCRIHGNIDMGRKVVDQLI 514 (605)
Q Consensus 438 a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 514 (605)
|+..|+++. ...|+ ...+..+..+|...|++++|+..+++.. .+.+...|..++.++...|++++|...|++++
T Consensus 4 a~~~~~~al---~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 4 ITERLEAML---AQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp HHHHHHHHH---TTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHH---HhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 455566555 33443 5666777777777777777777776642 23457778888888888899999999999988
Q ss_pred hcCCC
Q 007400 515 DQNPQ 519 (605)
Q Consensus 515 ~~~p~ 519 (605)
+..|.
T Consensus 81 ~~~~~ 85 (115)
T 2kat_A 81 AAAQS 85 (115)
T ss_dssp HHHHH
T ss_pred Hhccc
Confidence 88664
No 210
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=97.65 E-value=2e-06 Score=81.40 Aligned_cols=393 Identities=12% Similarity=0.105 Sum_probs=178.3
Q ss_pred hHHHHHHHHHHccCChHHHHHHHhhcCCCCceeHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccC
Q 007400 120 FSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLE 199 (605)
Q Consensus 120 ~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~ 199 (605)
.+|..+..+....+++.+|++-|-+ ..|+..|..+|.+..+.|.+++-+..+...++..-.| ..=+.++-+|++.+
T Consensus 55 ~VWs~LgkAqL~~~~v~eAIdsyIk--A~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~--~IDteLi~ayAk~~ 130 (624)
T 3lvg_A 55 AVWSQLAKAQLQKGMVKEAIDSYIK--ADDPSSYMEVVQAANTSGNWEELVKYLQMARKKARES--YVETELIFALAKTN 130 (624)
T ss_dssp CCSSSHHHHTTTSSSCTTTTTSSCC--CSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCST--TTTHHHHHHHHTSC
T ss_pred cHHHHHHHHHHccCchHHHHHHHHh--CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhccc--ccHHHHHHHHHhhC
Confidence 4455566666666666655544432 2355556666666666666666666666555532222 23345566666666
Q ss_pred ChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhcCCCCcchHHHHHHHHHhcCChHHHHHHHhhCCC
Q 007400 200 ELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPE 279 (605)
Q Consensus 200 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~ 279 (605)
++.+.++++ -.|+..-...+.+-|...|.++.|.-+|..+..- ..|...+.+.|++..|.+.-++ .
T Consensus 131 rL~elEefl-------~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~-----akLAstLV~L~~yq~AVdaArK--A 196 (624)
T 3lvg_A 131 RLAELEEFI-------NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNF-----GRLASTLVHLGEYQAAVDGARK--A 196 (624)
T ss_dssp SSSTTTSTT-------SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCC-----TTTSSSSSSCSGGGSSTTTTTT--C
T ss_pred cHHHHHHHH-------cCCCcccHHHHHHHHHHccCHHHHHHHHHhCccH-----HHHHHHHHHHHHHHHHHHHHHh--c
Confidence 655444332 1244444455566666666666666555544321 1111112222222222221111 1
Q ss_pred CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhcccchHHHHHHHHHHHHcCCCCChhHHHHHH
Q 007400 280 KNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLI 359 (605)
Q Consensus 280 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 359 (605)
.++.+|-.+-.+|...+++.-|...--.+.- .|+ ....++..|-..|.+++...+++...... .....+|+-|.
T Consensus 197 ns~ktWKeV~~ACvd~~EfrLAqicGLniIv---had--eL~elv~~YE~~G~f~ELIsLlEaglglE-rAHmGmFTELa 270 (624)
T 3lvg_A 197 NSTRTWKEVCFACVDGKEFRLAQMCGLHIVV---HAD--ELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELA 270 (624)
T ss_dssp CSSCSHHHHTHHHHHSCTTTTTTHHHHHHHC---CSS--CCSGGGSSSSTTCCCTTSTTTHHHHTTST-TCCHHHHHHHH
T ss_pred CChhHHHHHHHHHhCchHHHHHHHhcchhcc---cHH--HHHHHHHHHHhCCCHHHHHHHHHHHhCCC-chhHHHHHHHH
Confidence 2444555555555555555444333222221 111 11112333444455555444444443211 23344445444
Q ss_pred HHHHhcCChHHHHHHHHhcCCC----------CCcchHHHHHHHHHHcCCHHHHHHH-------------HHHHHHCCCC
Q 007400 360 DMYSKCGCLNDGRQVFDLTDNK----------ENSMLWNTMISALTQHGYDEQAIRL-------------FHDMVRSSVK 416 (605)
Q Consensus 360 ~~~~~~g~~~~A~~~~~~~~~~----------~~~~~~~~l~~~~~~~g~~~~a~~~-------------~~~m~~~~~~ 416 (605)
-.|++- ++++..+.++..-.+ -....|.-++-.|..-.+++.|... |.+.+. -.
T Consensus 271 ILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ltMi~h~~~Aw~h~~Fkdii~--KV 347 (624)
T 3lvg_A 271 ILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIIT--KV 347 (624)
T ss_dssp HHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHHTTTSCHHHHCCGGGGTTTGG--GC
T ss_pred HHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHHHHHhCChhhccHHHHHHHHH--Hc
Confidence 444442 333333333322211 1233455555555555555544321 111111 01
Q ss_pred CCHHHH---------------HHHHHHHhccCcHHHHHHHHHHchHhh-------CC--CCCHHHHHHHHHHHHhcCChH
Q 007400 417 PDKITL---------------AVILNACTHSGLVQEGLTYFESMTHDL-------GI--IPNQEHHACLIELLAQAGCSD 472 (605)
Q Consensus 417 p~~~~~---------------~~l~~~~~~~g~~~~a~~~~~~~~~~~-------~~--~p~~~~~~~l~~~~~~~g~~~ 472 (605)
.|...| +-|+.++...=|..++.++|++.-.-. .+ .-+..+=.++-+.|....+++
T Consensus 348 aN~EiyYKAi~FYL~e~P~lL~DLL~vL~prlDh~RvV~~~~k~~~LpLIkpYL~~Vq~~N~~aVNeAln~L~IEEEDy~ 427 (624)
T 3lvg_A 348 ANVELYYRAIQFYLEFKPLLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQNHNNKSVNESLNNLFITEEDYQ 427 (624)
T ss_dssp SCSHHHHHHHHHHTTSCCTTSHHHHHHHCTTCCSTTTHHHHHTTTCGGGGTGGGTSCCCSCCHHHHHHHHHHHHHTTCCH
T ss_pred chHHHHHHHHHHHHHhChHHHHHHHHhccccCChHHHHHHHHhcCCchhhHHHHHHHHHhhHHHHHHHHHHHHhhhhhHH
Confidence 122222 223333333334444445544432000 01 112344456667777888877
Q ss_pred HHHHHHHhCC------------CCCCHHHHHHHHHHHHhcCCHHHHHHH------HHHHHhc--CCCCCchHHHHHHHHH
Q 007400 473 QLMNQLEKMP------------YEHDSYLWNALHGVCRIHGNIDMGRKV------VDQLIDQ--NPQSSATHGLLSSIYS 532 (605)
Q Consensus 473 ~A~~~~~~~~------------~~~~~~~~~~l~~~~~~~g~~~~A~~~------~~~~~~~--~p~~~~~~~~l~~~~~ 532 (605)
.-.+.++... ..+-......-+..|.+.++++++.++ |+.+++. ...+...-..|.+-+.
T Consensus 428 ~LR~SId~ydNFD~i~LA~rLEkHeL~eFRrIAA~LYkkn~rw~qsi~l~KkDklykDAietAa~S~~~elaeeLL~yFv 507 (624)
T 3lvg_A 428 ALRTSIDAYDNFDNISLAQRLEKHELIEFRRIAAYLFKGNNRWKQSVELCKKDSLYKDAMQYASESKDTELAEELLQWFL 507 (624)
T ss_dssp HHHHTTSSCCCSCTTHHHHHHHTCSSHHHHHHHHHHHHTTCHHHHHSSCSSTTCCTTGGGTTTTTCCCTTHHHHHHHHHH
T ss_pred HHHHHHHHhccccHHHHHHHHhhCchHHHHHHHHHHHHhcccHHHHHHHHHhcccHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 6655554332 112233334445567777888877654 4444443 3345555556666666
Q ss_pred hcCCchH
Q 007400 533 ALGKGRL 539 (605)
Q Consensus 533 ~~g~~~~ 539 (605)
..|+.+-
T Consensus 508 ~~g~~Ec 514 (624)
T 3lvg_A 508 QEEKREC 514 (624)
T ss_dssp HHCSTHH
T ss_pred HcCchHH
Confidence 6666553
No 211
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.62 E-value=0.00087 Score=53.86 Aligned_cols=112 Identities=10% Similarity=-0.073 Sum_probs=92.9
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHchHhhCCCCCHHHHHHHHHHHHh----cCChH
Q 007400 397 HGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQ----AGCSD 472 (605)
Q Consensus 397 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~ 472 (605)
.+++++|+++|++..+.| .|+.. +...|...+.+++|..+|++.. +. -++.....|...|.. .++++
T Consensus 8 ~~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa-~~---g~~~a~~~Lg~~y~~G~g~~~d~~ 78 (138)
T 1klx_A 8 KKDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKAC-EL---NSGNGCRFLGDFYENGKYVKKDLR 78 (138)
T ss_dssp HHHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHH-HT---TCHHHHHHHHHHHHHCSSSCCCHH
T ss_pred ccCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHH-cC---CCHHHHHHHHHHHHcCCCCCccHH
Confidence 356789999999999987 33433 7777888888899999999988 42 356788888999988 88999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcC
Q 007400 473 QLMNQLEKMPYEHDSYLWNALHGVCRI----HGNIDMGRKVVDQLIDQN 517 (605)
Q Consensus 473 ~A~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~ 517 (605)
+|.++|++.....++.....|...|.. .+++++|...|+++.+..
T Consensus 79 ~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 79 KAAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 999999987545788888999999988 899999999999999884
No 212
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.61 E-value=0.0003 Score=52.61 Aligned_cols=63 Identities=19% Similarity=0.216 Sum_probs=34.1
Q ss_pred HHHHHhcCChHHHHHHHHhCC--CCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchH
Q 007400 462 IELLAQAGCSDQLMNQLEKMP--YEHDSY-LWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATH 524 (605)
Q Consensus 462 ~~~~~~~g~~~~A~~~~~~~~--~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 524 (605)
+..+.+.|++++|...+++.. .+.+.. .+..++.++...|++++|+..|+++++.+|++...+
T Consensus 7 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 72 (99)
T 2kc7_A 7 IKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQ 72 (99)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Confidence 344555566666665555541 123344 555555555556666666666666666655555444
No 213
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.59 E-value=0.0022 Score=59.85 Aligned_cols=46 Identities=20% Similarity=0.156 Sum_probs=29.2
Q ss_pred CcchHHHHHHHH--HHcCC---HHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHh
Q 007400 383 NSMLWNTMISAL--TQHGY---DEQAIRLFHDMVRSSVKPDK-ITLAVILNACT 430 (605)
Q Consensus 383 ~~~~~~~l~~~~--~~~g~---~~~a~~~~~~m~~~~~~p~~-~~~~~l~~~~~ 430 (605)
+...|...+++. ...++ ..+|..+|++.++ +.|+. ..+..+..++.
T Consensus 193 ~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~--lDP~~a~A~A~la~a~~ 244 (372)
T 3ly7_A 193 RGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQ--SSPEFTYARAEKALVDI 244 (372)
T ss_dssp SGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHH
Confidence 566677766653 33333 4678999999998 67864 45555554443
No 214
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.51 E-value=5.1e-05 Score=73.98 Aligned_cols=103 Identities=15% Similarity=0.056 Sum_probs=73.0
Q ss_pred cCChHHHHHHHHhC--------C-CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-----CCC---CCchHHHHHH
Q 007400 468 AGCSDQLMNQLEKM--------P-YEHD-SYLWNALHGVCRIHGNIDMGRKVVDQLIDQ-----NPQ---SSATHGLLSS 529 (605)
Q Consensus 468 ~g~~~~A~~~~~~~--------~-~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~p~---~~~~~~~l~~ 529 (605)
.|++++|+.++++. + ..|+ ..+++.++.+|..+|++++|+.+++++++. .|+ -...+..|+.
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 45666666666553 1 1222 356788899999999999999999999875 343 3457788999
Q ss_pred HHHhcCCchHHHHHHHHHHhCCCcCCCceeEEEECCEEEEEEeCCCCCcchHHHHHHHH
Q 007400 530 IYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLE 588 (605)
Q Consensus 530 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 588 (605)
+|..+|++++|+.++++..+-... .-...||...+++..|+
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~i~~~------------------~lG~~Hp~~~~l~~~l~ 431 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIAIMEV------------------AHGKDHPYISEIKQEIE 431 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHH------------------HTCTTCHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHHHHHH------------------HcCCCChHHHHHHHHHh
Confidence 999999999999999888653110 11236887777766554
No 215
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.46 E-value=0.00079 Score=50.27 Aligned_cols=55 Identities=16% Similarity=0.207 Sum_probs=27.5
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCCc-hHHHHHHHHHhcCCchHHHHHHHHHHh
Q 007400 495 GVCRIHGNIDMGRKVVDQLIDQNPQSSA-THGLLSSIYSALGKGRLVEKVRQLINE 549 (605)
Q Consensus 495 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~ 549 (605)
..+...|++++|...|+++++..|+++. .+..++.+|...|++++|+..++++.+
T Consensus 8 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 63 (99)
T 2kc7_A 8 KELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIE 63 (99)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3444445555555555555555554444 455555555555555555555554443
No 216
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.42 E-value=0.0005 Score=51.62 Aligned_cols=62 Identities=11% Similarity=0.170 Sum_probs=45.5
Q ss_pred CcchHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHch
Q 007400 383 NSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKP-DKITLAVILNACTHSGLVQEGLTYFESMT 446 (605)
Q Consensus 383 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 446 (605)
+...+..+...+...|++++|+..|++.++. .| +...+..+..+|...|++++|...|++..
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVET--DPDYVGTYYHLGKLYERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5566777777777778888888888777773 44 35577777777777888888887777776
No 217
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.42 E-value=0.00082 Score=62.72 Aligned_cols=132 Identities=12% Similarity=0.081 Sum_probs=94.6
Q ss_pred CCCHHHHHHHHHHHh--c---cCcHHHHHHHHHHchHhhCCCCC-HHHHHHHHHHHHh---cC-Ch-------HHHHHHH
Q 007400 416 KPDKITLAVILNACT--H---SGLVQEGLTYFESMTHDLGIIPN-QEHHACLIELLAQ---AG-CS-------DQLMNQL 478 (605)
Q Consensus 416 ~p~~~~~~~l~~~~~--~---~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~---~g-~~-------~~A~~~~ 478 (605)
+.+...|..++++.. . ..+..+|..+|+++. ...|+ ...+..+..+|.- .+ .. ..+.+..
T Consensus 191 p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al---~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~ 267 (372)
T 3ly7_A 191 PHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIV---QSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNI 267 (372)
T ss_dssp CSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHH---HHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH---HhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHH
Confidence 446666777666543 2 334688999999998 55787 4556555555431 11 11 1222222
Q ss_pred HhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 007400 479 EKMP-YEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQ 551 (605)
Q Consensus 479 ~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 551 (605)
..+. .+.++.++..+...+...|++++|...++++++++| +...|..++.++.-.|++++|.+.+++....+
T Consensus 268 ~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~-s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~ 340 (372)
T 3ly7_A 268 VTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEM-SWLNYVLLGKVYEMKGMNREAADAYLTAFNLR 340 (372)
T ss_dssp HTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 2222 356788888888888888999999999999999998 67788899999999999999999999887654
No 218
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=97.41 E-value=0.023 Score=43.54 Aligned_cols=148 Identities=11% Similarity=0.092 Sum_probs=109.0
Q ss_pred HHHHHHH--HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHchHhhCCCCCHHHHHHHHHH
Q 007400 387 WNTMISA--LTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIEL 464 (605)
Q Consensus 387 ~~~l~~~--~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~ 464 (605)
...|+.+ +.-.|..++..++..+.... .+..-++.++--....-+-+-..+.++.+-+-+ |
T Consensus 8 ~kkLmeAK~~ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiF----D---------- 70 (172)
T 1wy6_A 8 IRKLMDAKKFLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYF----D---------- 70 (172)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGS----C----------
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhhc----C----------
Confidence 3445544 45578899999999888763 255566666655555556566666666654221 2
Q ss_pred HHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHH
Q 007400 465 LAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVR 544 (605)
Q Consensus 465 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~ 544 (605)
...+|++.....-+-.+. .+.......+.....+|.-++-.+++..++...|.++.....++.+|.+.|+..+|.+++
T Consensus 71 is~C~NlKrVi~C~~~~n--~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl 148 (172)
T 1wy6_A 71 LDKCQNLKSVVECGVINN--TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLL 148 (172)
T ss_dssp GGGCSCTHHHHHHHHHTT--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHhhhcHHHHHHHHHHhc--chHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHH
Confidence 134677777777776665 455666777888899999999999999987776668999999999999999999999999
Q ss_pred HHHHhCCCc
Q 007400 545 QLINERQFK 553 (605)
Q Consensus 545 ~~~~~~~~~ 553 (605)
.++-++|++
T Consensus 149 ~~AC~kG~k 157 (172)
T 1wy6_A 149 IEACKKGEK 157 (172)
T ss_dssp HHHHHTTCH
T ss_pred HHHHHhhhH
Confidence 999999875
No 219
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.28 E-value=0.0011 Score=64.70 Aligned_cols=95 Identities=14% Similarity=0.067 Sum_probs=67.7
Q ss_pred ccCcHHHHHHHHHHchHhh--CCC---CC-HHHHHHHHHHHHhcCChHHHHHHHHhC--------C-CCCC-HHHHHHHH
Q 007400 431 HSGLVQEGLTYFESMTHDL--GII---PN-QEHHACLIELLAQAGCSDQLMNQLEKM--------P-YEHD-SYLWNALH 494 (605)
Q Consensus 431 ~~g~~~~a~~~~~~~~~~~--~~~---p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~--------~-~~~~-~~~~~~l~ 494 (605)
..|++++|..++++..... -+. |+ ..+++.|+.+|...|++++|+.++++. + ..|+ ..+++.|+
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 3467777777777765321 122 23 457788888888888888888887764 1 2333 44688899
Q ss_pred HHHHhcCCHHHHHHHHHHHHhc-----CCCCCchHH
Q 007400 495 GVCRIHGNIDMGRKVVDQLIDQ-----NPQSSATHG 525 (605)
Q Consensus 495 ~~~~~~g~~~~A~~~~~~~~~~-----~p~~~~~~~ 525 (605)
..|..+|++++|+.+|+++++. .|+++.+-.
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~ 425 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYISE 425 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHHH
Confidence 9999999999999999999875 676665443
No 220
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=97.23 E-value=0.00069 Score=64.49 Aligned_cols=226 Identities=12% Similarity=0.093 Sum_probs=159.9
Q ss_pred hcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHhhhcCChhHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCChhHHH
Q 007400 29 SKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDAR 108 (605)
Q Consensus 29 ~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 108 (605)
..++..+|++.|- +. -|+..|..++.++.+.|.++.-.+.+....+...++. +=+.|+-+|++.++..+-+
T Consensus 66 ~~~~v~eAIdsyI---kA---~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~~---IDteLi~ayAk~~rL~elE 136 (624)
T 3lvg_A 66 QKGMVKEAIDSYI---KA---DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESY---VETELIFALAKTNRLAELE 136 (624)
T ss_dssp TSSSCTTTTTSSC---CC---SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCSTT---TTHHHHHHHHTSCSSSTTT
T ss_pred ccCchHHHHHHHH---hC---CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccc---cHHHHHHHHHhhCcHHHHH
Confidence 4566666665442 22 2566888999999999999988888776665543333 3467999999999876644
Q ss_pred HHhccCCCCCchHHHHHHHHHHccCChHHHHHHHhhcCC------------------------CCceeHHHHHHHHHhcC
Q 007400 109 KVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAE------------------------RDVVSWNTMIIGYAKSG 164 (605)
Q Consensus 109 ~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~------------------------~~~~~~~~li~~~~~~~ 164 (605)
+.+ ..||..-...+.+-|...|.++.|.-+|..+.. .++.||-.+-.+|...+
T Consensus 137 efl---~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktWKeV~~ACvd~~ 213 (624)
T 3lvg_A 137 EFI---NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGK 213 (624)
T ss_dssp STT---SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHHHHTHHHHHSC
T ss_pred HHH---cCCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHhCch
Confidence 332 236666677888888899999888888887641 37788999999999998
Q ss_pred ChHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHh
Q 007400 165 AVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFD 244 (605)
Q Consensus 165 ~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 244 (605)
.+.-|.-.--.+. ..+.-...++..|-..|.+++-..+++.-+.. -......|+-|.-.|++- +.++..+.++
T Consensus 214 EfrLAqicGLniI-----vhadeL~elv~~YE~~G~f~ELIsLlEaglgl-ErAHmGmFTELaILYsKY-~PeKlmEHlk 286 (624)
T 3lvg_A 214 EFRLAQMCGLHIV-----VHADELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKF-KPQKMREHLE 286 (624)
T ss_dssp TTTTTTHHHHHHH-----CCSSCCSGGGSSSSTTCCCTTSTTTHHHHTTS-TTCCHHHHHHHHHHHHSS-CTTHHHHHHT
T ss_pred HHHHHHHhcchhc-----ccHHHHHHHHHHHHhCCCHHHHHHHHHHHhCC-CchhHHHHHHHHHHHHhc-CHHHHHHHHH
Confidence 8887765544333 22223345666778888888888888776532 234677888888888875 5666666665
Q ss_pred hcCCC-----------CcchHHHHHHHHHhcCChHHHHHH
Q 007400 245 ETDAR-----------DVLTWTTMVSGYAKLGDMESASKL 273 (605)
Q Consensus 245 ~~~~~-----------~~~~~~~li~~~~~~~~~~~A~~~ 273 (605)
-.-.+ ....|..++-.|..-..++.|...
T Consensus 287 lf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~lt 326 (624)
T 3lvg_A 287 LFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT 326 (624)
T ss_dssp TSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHHT
T ss_pred HHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHHH
Confidence 54433 456799999999999999987543
No 221
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=97.20 E-value=0.0015 Score=50.15 Aligned_cols=65 Identities=9% Similarity=-0.123 Sum_probs=34.6
Q ss_pred CCHHHHHHHHHHHHhcCCHHH---HHHHHHHHHhcC-C-CCCchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 007400 485 HDSYLWNALHGVCRIHGNIDM---GRKVVDQLIDQN-P-QSSATHGLLSSIYSALGKGRLVEKVRQLINE 549 (605)
Q Consensus 485 ~~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 549 (605)
++..+-..+++++.+..+... ++.+++.+++.. | ......+.|+-.+.+.|+|++|.+.++.+.+
T Consensus 33 ~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~ 102 (126)
T 1nzn_A 33 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ 102 (126)
T ss_dssp CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 444455555555555443333 555555555543 3 2344555566666666666666666665554
No 222
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=97.17 E-value=0.0095 Score=46.46 Aligned_cols=91 Identities=7% Similarity=-0.003 Sum_probs=61.7
Q ss_pred CCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhcCCC-CCchHHHHHHHHHhcCCchHHHHHHHHHHhCCCcCCCcee
Q 007400 484 EHDSYLWNALHGVCRIHGN---IDMGRKVVDQLIDQNPQ-SSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAIS 559 (605)
Q Consensus 484 ~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~s 559 (605)
.++..+-..+++++.+..+ ..+++.+++.+++..|. .....+.|+-.+.+.|+|++|.++.+.+++.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~--------- 106 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH--------- 106 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT---------
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc---------
Confidence 4666666667777766553 45677777777777663 4456667788888888888888888877663
Q ss_pred EEEECCEEEEEEeCCCCCcchHHHHHHHHHHHHHHhhCCCC
Q 007400 560 WIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQMGEDAPS 600 (605)
Q Consensus 560 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 600 (605)
.|+.+++..+-..+..++..+|.+
T Consensus 107 -----------------eP~n~QA~~Lk~~Ie~~i~kdGli 130 (144)
T 1y8m_A 107 -----------------ERNNKQVGALKSMVEDKIQKETLK 130 (144)
T ss_dssp -----------------CCCCHHHHHHHHHHHHHHHHTTTT
T ss_pred -----------------CCCcHHHHHHHHHHHHHHHHhchh
Confidence 555666666666666667777653
No 223
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.99 E-value=0.0029 Score=61.73 Aligned_cols=100 Identities=9% Similarity=0.009 Sum_probs=68.6
Q ss_pred HHHhccCcHHHHHHHHHHchHhh--CCCCC----HHHHHHHHHHHHhcCChHHHHHHHHhC--------C-CCCC-HHHH
Q 007400 427 NACTHSGLVQEGLTYFESMTHDL--GIIPN----QEHHACLIELLAQAGCSDQLMNQLEKM--------P-YEHD-SYLW 490 (605)
Q Consensus 427 ~~~~~~g~~~~a~~~~~~~~~~~--~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~--------~-~~~~-~~~~ 490 (605)
..+...|++++|..++++..... -+.|+ ..+++.|+.+|...|++++|+.++++. + ..|+ ..++
T Consensus 295 e~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l 374 (429)
T 3qwp_A 295 EELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQV 374 (429)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHH
T ss_pred HHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHH
Confidence 33445677777777777665221 12222 456777778888888888888777654 1 2233 4467
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhc-----CCCCCchHHH
Q 007400 491 NALHGVCRIHGNIDMGRKVVDQLIDQ-----NPQSSATHGL 526 (605)
Q Consensus 491 ~~l~~~~~~~g~~~~A~~~~~~~~~~-----~p~~~~~~~~ 526 (605)
+.|+..|..+|++++|+.+++++++. .|+++.+-..
T Consensus 375 ~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~ 415 (429)
T 3qwp_A 375 MKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDL 415 (429)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHH
Confidence 88999999999999999999999875 6766655443
No 224
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.99 E-value=0.005 Score=46.38 Aligned_cols=73 Identities=14% Similarity=0.099 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHhCC---------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHH
Q 007400 456 EHHACLIELLAQAGCSDQLMNQLEKMP---------YEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGL 526 (605)
Q Consensus 456 ~~~~~l~~~~~~~g~~~~A~~~~~~~~---------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 526 (605)
.-...|+..+.+.|++..|...++... ..+...++..++.++.+.|+++.|..+++++++..|++..+...
T Consensus 6 ~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~n 85 (104)
T 2v5f_A 6 EDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGN 85 (104)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHhh
Confidence 334455556666666666666555431 12346788889999999999999999999999999988777555
Q ss_pred HH
Q 007400 527 LS 528 (605)
Q Consensus 527 l~ 528 (605)
+.
T Consensus 86 ~~ 87 (104)
T 2v5f_A 86 LK 87 (104)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 225
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.87 E-value=0.0042 Score=49.65 Aligned_cols=90 Identities=14% Similarity=0.014 Sum_probs=59.9
Q ss_pred HHHHHHHHHHchHhhCCCCCHHHHHHHHHHHHhcC---ChHHHHHHHHhCC-CC-C--CHHHHHHHHHHHHhcCCHHHHH
Q 007400 435 VQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAG---CSDQLMNQLEKMP-YE-H--DSYLWNALHGVCRIHGNIDMGR 507 (605)
Q Consensus 435 ~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~-~~-~--~~~~~~~l~~~~~~~g~~~~A~ 507 (605)
...+.+.|.+.. ..+. ++..+...+..++.+.+ +.++++.++++.- .. | ....+..++-++.+.|++++|+
T Consensus 14 l~~~~~~y~~e~-~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~ 91 (152)
T 1pc2_A 14 LLKFEKKFQSEK-AAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKAL 91 (152)
T ss_dssp HHHHHHHHHHHH-HTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHH-ccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHH
Confidence 344455555444 2122 55666666666676666 4456666666542 11 3 3456777888999999999999
Q ss_pred HHHHHHHhcCCCCCchHHH
Q 007400 508 KVVDQLIDQNPQSSATHGL 526 (605)
Q Consensus 508 ~~~~~~~~~~p~~~~~~~~ 526 (605)
++++++++.+|+|..+...
T Consensus 92 ~y~~~lL~ieP~n~QA~~L 110 (152)
T 1pc2_A 92 KYVRGLLQTEPQNNQAKEL 110 (152)
T ss_dssp HHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHhcCCCCHHHHHH
Confidence 9999999999987765554
No 226
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.84 E-value=0.043 Score=58.99 Aligned_cols=45 Identities=24% Similarity=0.244 Sum_probs=23.3
Q ss_pred HhcCChHHHHHHHHhcCCCCCcchHHHHHHHHHHcCCHHHHHHHHHHH
Q 007400 363 SKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDM 410 (605)
Q Consensus 363 ~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 410 (605)
...|+++.|.++.+.+. +...|..+...+.+.|+++.|++.|.++
T Consensus 663 l~~~~~~~A~~~~~~~~---~~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 663 LKVGQLTLARDLLTDES---AEMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHHTCHHHHHHHHTTCC---CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhcCCHHHHHHHHHhhC---cHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 34455555555544332 3345555555555555555555555544
No 227
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.72 E-value=0.26 Score=52.88 Aligned_cols=128 Identities=13% Similarity=0.082 Sum_probs=71.3
Q ss_pred HHHHHHHHhcCChHHHHHHHhhcCCCCcchHHHHHHHHHhcCChHHHHHHHhhCCCCChhhHHHHHHHHHhCCChHHHHH
Q 007400 224 SSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALE 303 (605)
Q Consensus 224 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 303 (605)
..++..+.+.|..+.|.++.+.- ..-.......|++++|.++.+.+ .+...|..+...+.+.|+++.|.+
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~~~--------~~~f~~~l~~~~~~~A~~~~~~~--~~~~~W~~la~~al~~~~~~~A~~ 702 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISPDQ--------DQKFELALKVGQLTLARDLLTDE--SAEMKWRALGDASLQRFNFKLAIE 702 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCCH--------HHHHHHHHHHTCHHHHHHHHTTC--CCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHhCCChHHheecCCCc--------chheehhhhcCCHHHHHHHHHhh--CcHhHHHHHHHHHHHcCCHHHHHH
Confidence 44555556666666666544321 11123344567777777776655 345677888888888888888888
Q ss_pred HHHHHHHCCCCCChHHHHHHHHHHhcccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHH
Q 007400 304 LFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFD 376 (605)
Q Consensus 304 ~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 376 (605)
.|.++.. |..+...+...|+.+....+-+.+...| -++....+|.+.|++++|.++|.
T Consensus 703 ~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~~------~~~~A~~~~~~~g~~~~a~~~~~ 760 (814)
T 3mkq_A 703 AFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETTG------KFNLAFNAYWIAGDIQGAKDLLI 760 (814)
T ss_dssp HHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHcC------chHHHHHHHHHcCCHHHHHHHHH
Confidence 8877653 3334444444555555544444444433 12333344555566666555543
No 228
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.71 E-value=0.0051 Score=54.90 Aligned_cols=85 Identities=9% Similarity=0.074 Sum_probs=67.6
Q ss_pred HHHHHHHHhC-CCCCC---HHHHHHHHHHHHh-----cCCHHHHHHHHHHHHhcCCCC-CchHHHHHHHHHhc-CCchHH
Q 007400 472 DQLMNQLEKM-PYEHD---SYLWNALHGVCRI-----HGNIDMGRKVVDQLIDQNPQS-SATHGLLSSIYSAL-GKGRLV 540 (605)
Q Consensus 472 ~~A~~~~~~~-~~~~~---~~~~~~l~~~~~~-----~g~~~~A~~~~~~~~~~~p~~-~~~~~~l~~~~~~~-g~~~~a 540 (605)
..|...+++. ...|+ ...|..++..|.. -|+.++|.++|+++++++|+. ..++..+++.++.. |+++++
T Consensus 180 ~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a 259 (301)
T 3u64_A 180 HAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGF 259 (301)
T ss_dssp HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHH
T ss_pred HHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHH
Confidence 4555556554 23454 5678888888887 499999999999999999974 99999999999885 999999
Q ss_pred HHHHHHHHhCCCcCCC
Q 007400 541 EKVRQLINERQFKKEQ 556 (605)
Q Consensus 541 ~~~~~~~~~~~~~~~~ 556 (605)
.+.+++.........|
T Consensus 260 ~~~L~kAL~a~p~~~P 275 (301)
T 3u64_A 260 DEALDRALAIDPESVP 275 (301)
T ss_dssp HHHHHHHHHCCGGGCS
T ss_pred HHHHHHHHcCCCCCCC
Confidence 9999999887655334
No 229
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.69 E-value=0.018 Score=42.06 Aligned_cols=67 Identities=13% Similarity=-0.031 Sum_probs=53.1
Q ss_pred CCHHHHHHHHHHHHhcCC---hHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 007400 453 PNQEHHACLIELLAQAGC---SDQLMNQLEKMP--YEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQ 519 (605)
Q Consensus 453 p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 519 (605)
.++..+..+..++...++ .++|..++++.. .+.++..+..++..+.+.|++++|+..|+++++..|.
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 456677777777755444 688888888762 3456788888899999999999999999999999987
No 230
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=96.59 E-value=0.01 Score=45.63 Aligned_cols=66 Identities=9% Similarity=-0.017 Sum_probs=47.4
Q ss_pred CCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhcCCC-CCchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 007400 484 EHDSYLWNALHGVCRIHGN---IDMGRKVVDQLIDQNPQ-SSATHGLLSSIYSALGKGRLVEKVRQLINE 549 (605)
Q Consensus 484 ~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 549 (605)
.|+..+-..+++++.+..+ ..+++.+++.+++..|. ....+..|+..+.+.|++++|.++.+.+.+
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~ 106 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 106 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 4666666667777766553 45677778777777763 456677788888888888888888887765
No 231
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=96.41 E-value=1 Score=45.88 Aligned_cols=114 Identities=10% Similarity=0.071 Sum_probs=70.1
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHH----HHHHHHHHHhccCcHHHHHHHHHHchHhhCCCCCHHHHHHHHHHHHhcCChHH
Q 007400 398 GYDEQAIRLFHDMVRSSVKPDKI----TLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQ 473 (605)
Q Consensus 398 g~~~~a~~~~~~m~~~~~~p~~~----~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 473 (605)
.+.+.|...+....+.. ..+.. ....++......+...++...+.... . ..++.....-.+....+.|+++.
T Consensus 228 ~d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~e~~~r~Alr~~d~~~ 303 (618)
T 1qsa_A 228 QDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAI-M--RSQSTSLIERRVRMALGTGDRRG 303 (618)
T ss_dssp HCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHH-H--TCCCHHHHHHHHHHHHHHTCHHH
T ss_pred cCHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcc-c--cCCChHHHHHHHHHHHHCCCHHH
Confidence 47788888888876533 22332 33334444455553456666666654 2 22343334444455567799999
Q ss_pred HHHHHHhCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 007400 474 LMNQLEKMPYEH--DSYLWNALHGVCRIHGNIDMGRKVVDQLID 515 (605)
Q Consensus 474 A~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 515 (605)
|...|+.++..+ ......=++.++...|+.++|..+|+++.+
T Consensus 304 a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 304 LNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 999999886332 222223355577778999999999998875
No 232
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=96.37 E-value=1.3 Score=46.89 Aligned_cols=261 Identities=11% Similarity=0.051 Sum_probs=125.4
Q ss_pred HHhcCChHHHHHHHhhcCCC----Ccch--HHHHHHHHHhcCChHHHHHHHhhCCC-CC----------hhhHHHHHHHH
Q 007400 230 YAKCGELSDARRLFDETDAR----DVLT--WTTMVSGYAKLGDMESASKLFNEMPE-KN----------PVSWTTLIAGY 292 (605)
Q Consensus 230 ~~~~g~~~~a~~~~~~~~~~----~~~~--~~~li~~~~~~~~~~~A~~~~~~~~~-~~----------~~~~~~l~~~~ 292 (605)
....|+.++++.++...... +..+ -..+.-+....|..+++..++..... .+ +..-.++.-++
T Consensus 384 lIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGl 463 (963)
T 4ady_A 384 VIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGL 463 (963)
T ss_dssp HHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHH
T ss_pred hhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHH
Confidence 55677777788877776642 2221 22223334455555556665554332 12 11122233333
Q ss_pred HhCCC-hHHHHHHHHHHHHCCCCCChHHHH--HHHHHHhcccchHHHHHHHHHHHHcCCCCChhHHHHH--HHHHHhcCC
Q 007400 293 TRNGL-GQKALELFTRMMILRIRPNQHTFS--SCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSL--IDMYSKCGC 367 (605)
Q Consensus 293 ~~~g~-~~~a~~~~~~m~~~g~~p~~~~~~--~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l--~~~~~~~g~ 367 (605)
+-.|. -+++.+.+..+....- +...... .+...+.-.|+.+....++..+.+.. +..+...+ .-++...|+
T Consensus 464 a~~GS~~eev~e~L~~~L~dd~-~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~g~ 539 (963)
T 4ady_A 464 AAMGSANIEVYEALKEVLYNDS-ATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALINYGR 539 (963)
T ss_dssp HSTTCCCHHHHHHHHHHHHTCC-HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTTTC
T ss_pred HhcCCCCHHHHHHHHHHHhcCC-HHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhCCC
Confidence 33332 2455666666554221 1111111 22233445567676677776666532 22233323 333445677
Q ss_pred hHHHHHHHHhcCCCCCcch-HH---HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHH
Q 007400 368 LNDGRQVFDLTDNKENSML-WN---TMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFE 443 (605)
Q Consensus 368 ~~~A~~~~~~~~~~~~~~~-~~---~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 443 (605)
.+.+..+.+.+....++.. |. ++.-+|+..|+......+++.+.... ..+......+.-++...|+.+.+.++++
T Consensus 540 ~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv~ 618 (963)
T 4ady_A 540 QELADDLITKMLASDESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIVQ 618 (963)
T ss_dssp GGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHTT
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHHH
Confidence 7777666666553323332 22 23345667778777777887777631 1122222223333444555555666665
Q ss_pred HchHhhCCCCCHHHHHHHHHHHHhcCCh-HHHHHHHHhCCCCCCHHHHHHHHHHH
Q 007400 444 SMTHDLGIIPNQEHHACLIELLAQAGCS-DQLMNQLEKMPYEHDSYLWNALHGVC 497 (605)
Q Consensus 444 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~~l~~~~ 497 (605)
.+. + ...|....-..+.-+....|.. .++.+.+..+...+|..+...-+.++
T Consensus 619 ~L~-~-~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~D~d~~Vrq~Ai~AL 671 (963)
T 4ady_A 619 LLS-K-SHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTKDPVDFVRQAAMIAL 671 (963)
T ss_dssp TGG-G-CSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHTCSSHHHHHHHHHHH
T ss_pred HHH-h-cCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHccCCCHHHHHHHHHHH
Confidence 554 2 2234443333333344444433 56777777775455655554433333
No 233
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=96.21 E-value=0.079 Score=40.61 Aligned_cols=92 Identities=15% Similarity=0.027 Sum_probs=62.9
Q ss_pred cHHHHHHHHHHchHhhCCCCCHHHHHHHHHHHHhcCChHH---HHHHHHhCCCC--C--CHHHHHHHHHHHHhcCCHHHH
Q 007400 434 LVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQ---LMNQLEKMPYE--H--DSYLWNALHGVCRIHGNIDMG 506 (605)
Q Consensus 434 ~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~--~--~~~~~~~l~~~~~~~g~~~~A 506 (605)
....+.+.|.... ..+. |+..+-..+.+++.+.....+ ++.++++.-.. | .......++.++.+.|++++|
T Consensus 16 ~l~~~~~~y~~e~-~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A 93 (126)
T 1nzn_A 16 DLLKFEKKFQSEK-AAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKA 93 (126)
T ss_dssp HHHHHHHHHHHHH-HHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHh-ccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHH
Confidence 3444555555544 2233 666666677777777776655 77777765322 2 234556678899999999999
Q ss_pred HHHHHHHHhcCCCCCchHHHH
Q 007400 507 RKVVDQLIDQNPQSSATHGLL 527 (605)
Q Consensus 507 ~~~~~~~~~~~p~~~~~~~~l 527 (605)
+..++.+++..|+|..+....
T Consensus 94 ~~~~~~lL~~eP~n~QA~~Lk 114 (126)
T 1nzn_A 94 LKYVRGLLQTEPQNNQAKELE 114 (126)
T ss_dssp HHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHH
Confidence 999999999999887765543
No 234
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.04 E-value=0.026 Score=42.29 Aligned_cols=66 Identities=12% Similarity=-0.071 Sum_probs=55.9
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-------CCCCchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 007400 485 HDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQN-------PQSSATHGLLSSIYSALGKGRLVEKVRQLINER 550 (605)
Q Consensus 485 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-------p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 550 (605)
.+..-...++..+...|+++.|...|+++++.. +....++..|+.++.+.|++++|..+++++.+.
T Consensus 3 Lsa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 3 LTAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 345556678999999999999999999999862 234567889999999999999999999998764
No 235
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.03 E-value=0.37 Score=39.52 Aligned_cols=98 Identities=10% Similarity=0.147 Sum_probs=47.0
Q ss_pred CChHHHHHHHhhCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhcccchHHHHHHHHHHH
Q 007400 265 GDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLI 344 (605)
Q Consensus 265 ~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 344 (605)
|+++.|.++.+.+ .+...|..|.......|+++-|.+.|.+... +..+.-.|...|+.+....+-+...
T Consensus 19 g~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~kla~iA~ 87 (177)
T 3mkq_B 19 GNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSKMQNIAQ 87 (177)
T ss_dssp TCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 3333333443333 2444566666666666666666666655432 2233333444455544444444443
Q ss_pred HcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcC
Q 007400 345 RTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTD 379 (605)
Q Consensus 345 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 379 (605)
..| -++.....+.-.|+++++.++|.+..
T Consensus 88 ~~g------~~n~af~~~l~lGdv~~~i~lL~~~~ 116 (177)
T 3mkq_B 88 TRE------DFGSMLLNTFYNNSTKERSSIFAEGG 116 (177)
T ss_dssp HTT------CHHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred HCc------cHHHHHHHHHHcCCHHHHHHHHHHCC
Confidence 333 12333444555566666666655443
No 236
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=95.69 E-value=0.041 Score=57.01 Aligned_cols=57 Identities=7% Similarity=-0.108 Sum_probs=52.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHH
Q 007400 492 ALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLIN 548 (605)
Q Consensus 492 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 548 (605)
.-+..|...|+++.|+++.++++...|.+..+|..|+.+|...|+|+.|+-.+.-+.
T Consensus 342 ~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 342 IQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 345667789999999999999999999999999999999999999999999998773
No 237
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=95.49 E-value=0.074 Score=41.82 Aligned_cols=100 Identities=6% Similarity=0.145 Sum_probs=53.5
Q ss_pred CHHHHHHHHHHHhccCcH------HHHHHHHHHchHhhCCCCCHH-HHHHHHH------HHHhcCChHHHHHHHHhCC--
Q 007400 418 DKITLAVILNACTHSGLV------QEGLTYFESMTHDLGIIPNQE-HHACLIE------LLAQAGCSDQLMNQLEKMP-- 482 (605)
Q Consensus 418 ~~~~~~~l~~~~~~~g~~------~~a~~~~~~~~~~~~~~p~~~-~~~~l~~------~~~~~g~~~~A~~~~~~~~-- 482 (605)
|..+|-..+....+.|++ ++.+++|+++. . .++|+.. .+...+. .+...+++++|.++|+.+.
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAi-a-~~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~ 89 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAI-E-ALPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARAN 89 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHH-H-HSCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHH-H-cCCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 455777777766666777 67777777766 2 4455421 1111111 1123355666666665541
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 007400 483 YEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQ 519 (605)
Q Consensus 483 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 519 (605)
.+.-..+|...+..-.++|+.+.|++++.+++.+.|.
T Consensus 90 hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k 126 (161)
T 4h7y_A 90 CKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAV 126 (161)
T ss_dssp CTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred hHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC
Confidence 1122555555555556666666666666666666553
No 238
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=95.11 E-value=0.62 Score=41.71 Aligned_cols=125 Identities=11% Similarity=0.087 Sum_probs=84.6
Q ss_pred hcCChhHHHHHhccCCCCCc--hHHHHHHH-HHHcc--C------ChHHHHHHHhhcCC--CC---ceeHHHHHHHHHh-
Q 007400 100 KCGSDVDARKVFDKIPVKNL--FSYNNMLS-GYANL--G------MMKHARNLFDNMAE--RD---VVSWNTMIIGYAK- 162 (605)
Q Consensus 100 ~~g~~~~a~~~~~~~~~~~~--~~~~~li~-~~~~~--~------~~~~A~~~~~~~~~--~~---~~~~~~li~~~~~- 162 (605)
+.|+..+..+.+.+....++ ..|..++. .++.. | ....|...+++..+ |+ ...|..|...|.+
T Consensus 133 ~~~~~~~~~~~l~~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~v 212 (301)
T 3u64_A 133 FSGDEQRLHKVLSRCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAA 212 (301)
T ss_dssp TSSCHHHHHHHHTTCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHS
T ss_pred HhcchhhHHHHHHHcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhC
Confidence 34555555666666654443 34555544 23332 3 34566666776654 43 4478888888888
Q ss_pred ----cCChHHHHHHHHHHHhCCCCC--ChhhHHHHHHHHhcc-CChHHHHHHHHHHHHhCCC--CChhHHHHH
Q 007400 163 ----SGAVEEGLKFYKVLRRFSISC--NEFSFAGILTICVKL-EELKLTRQVHGQVLVTGFL--SNVVISSSI 226 (605)
Q Consensus 163 ----~~~~~~a~~~~~~m~~~~~~p--~~~~~~~ll~~~~~~-~~~~~a~~~~~~~~~~~~~--~~~~~~~~l 226 (605)
-|+.++|.+.|++..+ +.| +..++......++.. |+.+.+.+.+++.+...+. |+....+.+
T Consensus 213 Pp~~gGd~ekA~~~ferAL~--LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~~P~~~lan~~ 283 (301)
T 3u64_A 213 PESFGGGMEKAHTAFEHLTR--YCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPESVPHNKLLVIL 283 (301)
T ss_dssp CTTTTCCHHHHHHHHHHHHH--HCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGGCSSCHHHHHH
T ss_pred CCccCCCHHHHHHHHHHHHH--hCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCCChhHHHHH
Confidence 4899999999999988 445 477788888888774 8899999999999888776 665555443
No 239
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=94.79 E-value=0.1 Score=41.10 Aligned_cols=50 Identities=14% Similarity=0.041 Sum_probs=23.7
Q ss_pred CCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 007400 501 GNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINER 550 (605)
Q Consensus 501 g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 550 (605)
++.++|.++|+.+++....-+..|...+..-.++|+...|.+++......
T Consensus 74 ~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~ 123 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVER 123 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred cCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc
Confidence 44555555555554442222344444444444555555555555444443
No 240
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=94.40 E-value=1.7 Score=35.56 Aligned_cols=47 Identities=15% Similarity=0.275 Sum_probs=25.5
Q ss_pred HHHhcCChHHHHHHHHhcCCCCCcchHHHHHHHHHHcCCHHHHHHHHHHH
Q 007400 361 MYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDM 410 (605)
Q Consensus 361 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 410 (605)
.....|+++.|.++.+.+ .+...|..|.......|+++-|++.|.+.
T Consensus 14 LAL~lg~l~~A~e~a~~l---~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~ 60 (177)
T 3mkq_B 14 LALEYGNLDAALDEAKKL---NDSITWERLIQEALAQGNASLAEMIYQTQ 60 (177)
T ss_dssp HHHHTTCHHHHHHHHHHH---CCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HHHhcCCHHHHHHHHHHh---CCHHHHHHHHHHHHHcCChHHHHHHHHHh
Confidence 334455555555555444 13445666666666666666666655544
No 241
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=93.89 E-value=3.8 Score=37.58 Aligned_cols=167 Identities=11% Similarity=0.067 Sum_probs=89.9
Q ss_pred HHHHHHHHHHccCChHHHHHHHhhcCCCCceeHHHHHHHHHhcCChHHHHHHH----HHHHhCCCCCChhhHHHHHHHHh
Q 007400 121 SYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFY----KVLRRFSISCNEFSFAGILTICV 196 (605)
Q Consensus 121 ~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~----~~m~~~~~~p~~~~~~~ll~~~~ 196 (605)
.|.++..-|.+.+++++|++++-. -...+.+.|+...+.++- +-+.+.++++|......++..+.
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~-----------GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~ 105 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILAS-----------VSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLR 105 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 455555666666777777666543 234455566666555554 44456778888887777777776
Q ss_pred ccCChH-----HHHHHHHHHHHhC--CCCChhHHHHHHHHHHhcCChHHHHHHHhhcCCCCcchHHHHHHHHHhcCChHH
Q 007400 197 KLEELK-----LTRQVHGQVLVTG--FLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMES 269 (605)
Q Consensus 197 ~~~~~~-----~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 269 (605)
....-+ -..+...+..+.| ..-|......+...|.+.+++.+|+..|---....+..+..++..+...+...+
T Consensus 106 ~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~~~~e 185 (336)
T 3lpz_A 106 LFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQDESHT 185 (336)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTSCGGG
T ss_pred hCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCcc
Confidence 554321 1122233333344 333566677777888888888888777632111122455555544443332111
Q ss_pred HHHHHhhCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHH
Q 007400 270 ASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMM 309 (605)
Q Consensus 270 A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 309 (605)
+ +.. ....+--|...++...|..+++...
T Consensus 186 ~----------dlf-iaRaVL~yL~l~n~~~A~~~~~~f~ 214 (336)
T 3lpz_A 186 A----------PLY-CARAVLPYLLVANVRAANTAYRIFT 214 (336)
T ss_dssp H----------HHH-HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred H----------HHH-HHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 1 111 1222334555666776666555544
No 242
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=93.79 E-value=0.59 Score=37.63 Aligned_cols=62 Identities=11% Similarity=0.080 Sum_probs=33.0
Q ss_pred chHHHHHHHHHHcCCHHHHHHHHHHHHHCC-CCCCH-------HHHHHHHHHHhccCcHHHHHHHHHHch
Q 007400 385 MLWNTMISALTQHGYDEQAIRLFHDMVRSS-VKPDK-------ITLAVILNACTHSGLVQEGLTYFESMT 446 (605)
Q Consensus 385 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~-~~p~~-------~~~~~l~~~~~~~g~~~~a~~~~~~~~ 446 (605)
.++..-++.+...|.++.|+-+...+.... ..|+. .++..+.+++...+++.+|...|+++.
T Consensus 21 ~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qAL 90 (167)
T 3ffl_A 21 MNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMAL 90 (167)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 344444555566666666665555433210 11221 255556666666666666666666654
No 243
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=93.54 E-value=2 Score=33.14 Aligned_cols=61 Identities=15% Similarity=0.150 Sum_probs=36.6
Q ss_pred chHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHch
Q 007400 385 MLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMT 446 (605)
Q Consensus 385 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 446 (605)
......+..+...|+-++-.+++..+... -+|++.....+..+|.+.|+..+|.+++.++-
T Consensus 92 e~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC 152 (172)
T 1wy6_A 92 EHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEAC 152 (172)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHH
Confidence 33444555666666666666666664432 35566666666666666666666666666665
No 244
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=93.51 E-value=1.3 Score=34.65 Aligned_cols=74 Identities=12% Similarity=0.057 Sum_probs=53.9
Q ss_pred CCCHHHHHHHHHHHHhcCChH---HHHHHHHhCC-CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHH
Q 007400 452 IPNQEHHACLIELLAQAGCSD---QLMNQLEKMP-YEH--DSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHG 525 (605)
Q Consensus 452 ~p~~~~~~~l~~~~~~~g~~~---~A~~~~~~~~-~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 525 (605)
.|+..+--.+.+++.+....+ +++.++++.- ..| .......++-++.+.|++++|+++.+.+++..|+|..+..
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~ 115 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA 115 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHH
Confidence 566777677777777777544 4556666541 123 3445666788999999999999999999999998766544
No 245
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=93.36 E-value=0.58 Score=37.70 Aligned_cols=26 Identities=15% Similarity=0.126 Sum_probs=22.8
Q ss_pred chHHHHHHHHHhcCCchHHHHHHHHH
Q 007400 522 ATHGLLSSIYSALGKGRLVEKVRQLI 547 (605)
Q Consensus 522 ~~~~~l~~~~~~~g~~~~a~~~~~~~ 547 (605)
+.-+.++.+|.+.|++++|+.+++.+
T Consensus 123 Elkykia~C~~~l~~~~~Ai~~Le~I 148 (167)
T 3ffl_A 123 EVKYKLAECYTVLKQDKDAIAILDGI 148 (167)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHhcC
Confidence 46678999999999999999999854
No 246
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=93.21 E-value=3.6 Score=35.10 Aligned_cols=72 Identities=6% Similarity=0.061 Sum_probs=30.5
Q ss_pred HHHHHHHHhcCChHHHHHHHhhCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhcc
Q 007400 255 TTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASI 330 (605)
Q Consensus 255 ~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 330 (605)
...+.++.+.|..+....+...+..++...-...+.++.+.+. ..+...+..+.. .++...-...+.++...
T Consensus 130 ~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-~~~~~~L~~~l~---d~~~~vr~~A~~aL~~~ 201 (211)
T 3ltm_A 130 IAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADALGEIGG-ERVRAAMEKLAE---TGTGFARKVAVNYLETH 201 (211)
T ss_dssp HHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-HHHHHHHHHHHH---HCCHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-hhHHHHHHHHHh---CCCHHHHHHHHHHHHhc
Confidence 3333333333333322233333334455554555555555554 344444444444 23444444444444433
No 247
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=92.83 E-value=5.5 Score=36.27 Aligned_cols=131 Identities=11% Similarity=0.192 Sum_probs=74.0
Q ss_pred HHHHHHHHHHccCChHHHHHHHhhcCCCCceeHHHHHHHHHhcCChHHHHHH----HHHHHhCCCCCChhhHHHHHHHHh
Q 007400 121 SYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKF----YKVLRRFSISCNEFSFAGILTICV 196 (605)
Q Consensus 121 ~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~----~~~m~~~~~~p~~~~~~~ll~~~~ 196 (605)
.|.++..-|.+++++++|.+++.. -...+.+.|+...+.++ .+-..+.+++++......++..+.
T Consensus 35 ~~Rtl~~Ry~~~~~~~eAidlL~~-----------ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~ 103 (312)
T 2wpv_A 35 TLRTIANRYVRSKSYEHAIELISQ-----------GALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIA 103 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 455566666666677777666543 23445566776666554 444556778888887777777765
Q ss_pred ccCC-----hHHHHHHHHHHHHhCC--CCChhHHHHHHHHHHhcCChHHHHHHHhhcCCCCcchHHHHHHHHH
Q 007400 197 KLEE-----LKLTRQVHGQVLVTGF--LSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYA 262 (605)
Q Consensus 197 ~~~~-----~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~ 262 (605)
.... ..-..+...+..+.|. .-+...+..+...|.+.|++.+|+..|---...++..+..++.-+.
T Consensus 104 ~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~ 176 (312)
T 2wpv_A 104 ELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWL 176 (312)
T ss_dssp TCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHH
T ss_pred HCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHH
Confidence 5321 1222233333333332 2356667777777788888877776665222123444444444433
No 248
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=92.47 E-value=0.29 Score=46.93 Aligned_cols=68 Identities=9% Similarity=-0.011 Sum_probs=56.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHH-----hCCCcCCCc
Q 007400 490 WNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLIN-----ERQFKKEQA 557 (605)
Q Consensus 490 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-----~~~~~~~~~ 557 (605)
...++.++...|+++++...+..++..+|-+...+..++.+|.+.|+..+|+++|+.+. +.|+.|.+.
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~ 246 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPT 246 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHH
Confidence 34466777888999999999999999999999999999999999999999999988874 347766654
No 249
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=92.40 E-value=0.99 Score=34.75 Aligned_cols=75 Identities=13% Similarity=0.074 Sum_probs=52.4
Q ss_pred CCCHHHHHHHHHHHHhcCChH---HHHHHHHhCC-CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHH
Q 007400 452 IPNQEHHACLIELLAQAGCSD---QLMNQLEKMP-YEH--DSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHG 525 (605)
Q Consensus 452 ~p~~~~~~~l~~~~~~~g~~~---~A~~~~~~~~-~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 525 (605)
.|++.+--.+.+++.+..+.+ +++.++++.- ..| ....+..++-++.+.|++++|++..+.+++..|+|..+..
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~ 116 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA 116 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHH
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHH
Confidence 455666666777777776543 4556665541 123 3456667888899999999999999999999998776554
Q ss_pred H
Q 007400 526 L 526 (605)
Q Consensus 526 ~ 526 (605)
.
T Consensus 117 L 117 (134)
T 3o48_A 117 L 117 (134)
T ss_dssp H
T ss_pred H
Confidence 3
No 250
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.64 E-value=10 Score=36.80 Aligned_cols=185 Identities=8% Similarity=0.040 Sum_probs=105.6
Q ss_pred CChHHHHHHHHHHHH-----CCCCCChHHHHHHHHHHhcccchHHHHHHHHHHHHcCCCCChhHHHHHH----HHHHhcC
Q 007400 296 GLGQKALELFTRMMI-----LRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLI----DMYSKCG 366 (605)
Q Consensus 296 g~~~~a~~~~~~m~~-----~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~----~~~~~~g 366 (605)
|+++.|++.+..+.+ .+...+......++..|...++++...+.+..+.+..-.. ......++ .......
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~ql-k~ai~~~V~~~~~~l~~~~ 108 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQL-KLSIQYMIQKVMEYLKSSK 108 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTS-HHHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHhcCC
Confidence 455566555544443 2233444555666666666777766666555444322111 11222222 2222233
Q ss_pred ChH--HHHHHHHhcCCCCC---------cchHHHHHHHHHHcCCHHHHHHHHHHHHHC--CCCCCH---HHHHHHHHHHh
Q 007400 367 CLN--DGRQVFDLTDNKEN---------SMLWNTMISALTQHGYDEQAIRLFHDMVRS--SVKPDK---ITLAVILNACT 430 (605)
Q Consensus 367 ~~~--~A~~~~~~~~~~~~---------~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~--~~~p~~---~~~~~l~~~~~ 430 (605)
..+ .-..+.+.+...-+ ......|...+...|++.+|..++..+... |..+.. ..+..-++.|.
T Consensus 109 ~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l 188 (445)
T 4b4t_P 109 SLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSI 188 (445)
T ss_dssp TTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 222 22333433322101 112355778888999999999999988643 222111 36667778899
Q ss_pred ccCcHHHHHHHHHHchHhh---CCCCC--HHHHHHHHHHHHhcCChHHHHHHHHhC
Q 007400 431 HSGLVQEGLTYFESMTHDL---GIIPN--QEHHACLIELLAQAGCSDQLMNQLEKM 481 (605)
Q Consensus 431 ~~g~~~~a~~~~~~~~~~~---~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~ 481 (605)
..+++.+|..++.++.... ...|+ ...+...+..+...+++.+|...|.+.
T Consensus 189 ~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~ 244 (445)
T 4b4t_P 189 LKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEI 244 (445)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 9999999999998874211 22232 346677788888899999888777654
No 251
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=91.18 E-value=6.1 Score=33.24 Aligned_cols=60 Identities=8% Similarity=0.141 Sum_probs=26.1
Q ss_pred CcchHHHHHHHHHhcCChHHHHHHHhhCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHH
Q 007400 250 DVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMI 310 (605)
Q Consensus 250 ~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 310 (605)
+..+-...+.++.+.+..+....+...+..++...-...+.++...|. .++...+..+..
T Consensus 120 ~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~-~~~~~~L~~~l~ 179 (201)
T 3ltj_A 120 DWFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADALGEIGG-ERVRAAMEKLAE 179 (201)
T ss_dssp SHHHHHHHHHHHHHHTCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-hhHHHHHHHHHh
Confidence 333333334444444433333333333444455555555555555554 334444444443
No 252
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=90.97 E-value=9.1 Score=34.85 Aligned_cols=165 Identities=8% Similarity=0.066 Sum_probs=91.7
Q ss_pred HHHHHHHHhcCChHHHHHHHhhCCCCChhhHHHHHHHHHhCCChHHHHHH----HHHHHHCCCCCChHHHHHHHHHHhcc
Q 007400 255 TTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALEL----FTRMMILRIRPNQHTFSSCLCACASI 330 (605)
Q Consensus 255 ~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~----~~~m~~~g~~p~~~~~~~ll~~~~~~ 330 (605)
.++..-|.+.+++++|.+++..- ...+.+.|+...|.++ ++-..+.+++++......++..+...
T Consensus 37 Rtl~~Ry~~~~~~~eAidlL~~g-----------a~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~~ 105 (312)
T 2wpv_A 37 RTIANRYVRSKSYEHAIELISQG-----------ALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAEL 105 (312)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHC
Confidence 34455566666666666665432 3445667776665553 55556678888888888887776553
Q ss_pred cchH-HHHHHHHHHH----HcC--CCCChhHHHHHHHHHHhcCChHHHHHHHHhcCCCCCcchHHHHHHHHHHc---CCH
Q 007400 331 VSLK-HGKQVHGFLI----RTN--FRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQH---GYD 400 (605)
Q Consensus 331 ~~~~-~a~~~~~~~~----~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~ 400 (605)
..-+ .-..+++.++ +.| ..-++.....+...|.+.|++.+|+..|-.-... +...+..++.-+... |..
T Consensus 106 p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~-s~~~~a~~l~~w~~~~~~~~~ 184 (312)
T 2wpv_A 106 DPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHD-SMIKYVDLLWDWLCQVDDIED 184 (312)
T ss_dssp CTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHH-HHHHHHHHHHHHHHHTTCCCH
T ss_pred CCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCc-cHHHHHHHHHHHHHhcCCCCc
Confidence 2111 1223333333 332 2246778888888999999998888877522211 233343333333222 222
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHch
Q 007400 401 EQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMT 446 (605)
Q Consensus 401 ~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 446 (605)
.++- .. ....+-.|.-.|+...|..+++...
T Consensus 185 ~e~d--------------lf-~~RaVL~yL~l~n~~~A~~~~~~f~ 215 (312)
T 2wpv_A 185 STVA--------------EF-FSRLVFNYLFISNISFAHESKDIFL 215 (312)
T ss_dssp HHHH--------------HH-HHHHHHHHHHTTBHHHHHHHHHHHH
T ss_pred chHH--------------HH-HHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 2211 11 1122223455678888888887765
No 253
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=90.30 E-value=7.2 Score=37.97 Aligned_cols=186 Identities=11% Similarity=0.049 Sum_probs=114.5
Q ss_pred cchHHHHHHHHHHHHc-----CCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCCCC--CcchHHHHHHH----HHHcCC
Q 007400 331 VSLKHGKQVHGFLIRT-----NFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKE--NSMLWNTMISA----LTQHGY 399 (605)
Q Consensus 331 ~~~~~a~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~l~~~----~~~~g~ 399 (605)
|+++.|.+.+..+.+. +...+......++..+...|+++...+.+..+..+- ....-..+++. ......
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~~~~ 109 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSKS 109 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHHHCT
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCc
Confidence 6777787776665542 234456677889999999999999877776554331 11122233332 222333
Q ss_pred HHHH--HHHHHHHHH--CC-CCC---CHHHHHHHHHHHhccCcHHHHHHHHHHchHhhC-CCCC---HHHHHHHHHHHHh
Q 007400 400 DEQA--IRLFHDMVR--SS-VKP---DKITLAVILNACTHSGLVQEGLTYFESMTHDLG-IIPN---QEHHACLIELLAQ 467 (605)
Q Consensus 400 ~~~a--~~~~~~m~~--~~-~~p---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~p~---~~~~~~l~~~~~~ 467 (605)
.+.. ..+.+.... .| +-. .......|...+...|++.+|..++..+..+.. ..+. ...+...++.|..
T Consensus 110 ~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~ 189 (445)
T 4b4t_P 110 LDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSIL 189 (445)
T ss_dssp THHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence 3321 112111110 11 111 112345677888899999999999999875432 2222 4577778888999
Q ss_pred cCChHHHHHHHHhCC-----CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 007400 468 AGCSDQLMNQLEKMP-----YEHD----SYLWNALHGVCRIHGNIDMGRKVVDQLIDQ 516 (605)
Q Consensus 468 ~g~~~~A~~~~~~~~-----~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 516 (605)
.+++.+|..++.++. ..+. ...+...+..+...+++.+|-..|..+.+.
T Consensus 190 ~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~ 247 (445)
T 4b4t_P 190 KGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQT 247 (445)
T ss_dssp HTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 999999998888752 1222 234455666777788888888888777653
No 254
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=90.20 E-value=7.9 Score=32.87 Aligned_cols=132 Identities=12% Similarity=0.116 Sum_probs=68.2
Q ss_pred HHHHHhcCChHHHHHHHhhcCCCCcchHHHHHHHHHhcCChHHHHHHHhhCCCCChhhHHHHHHHHHhCCChHHHHHHHH
Q 007400 227 VDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFT 306 (605)
Q Consensus 227 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 306 (605)
+.++.+.|+.+....+.+.+..++...-...+.++.+.++.+....+...+..++...-...+.++.+.|..+ +...+.
T Consensus 71 ~~aL~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~-~~~~L~ 149 (211)
T 3ltm_A 71 ADALGQIGDERAVEPLIKALKDEDGWVRQSAAVALGQIGDERAVEPLIKALKDEDWFVRIAAAFALGEIGDER-AVEPLI 149 (211)
T ss_dssp HHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGG-GHHHHH
T ss_pred HHHHHhhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHH-HHHHHH
Confidence 3333333433333333333333444444445555555555444444555555667766666777777776643 444555
Q ss_pred HHHHCCCCCChHHHHHHHHHHhcccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcC
Q 007400 307 RMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCG 366 (605)
Q Consensus 307 ~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 366 (605)
.+.. .++...-...+.++...+. ..+...+..+.+. ++..+-...+.++.+.+
T Consensus 150 ~~l~---d~~~~vr~~a~~aL~~~~~-~~~~~~L~~~l~d---~~~~vr~~A~~aL~~~~ 202 (211)
T 3ltm_A 150 KALK---DEDGWVRQSAADALGEIGG-ERVRAAMEKLAET---GTGFARKVAVNYLETHK 202 (211)
T ss_dssp HHTT---CSSHHHHHHHHHHHHHHCS-HHHHHHHHHHHHH---CCHHHHHHHHHHHHC--
T ss_pred HHHc---CCCHHHHHHHHHHHHHhCc-hhHHHHHHHHHhC---CCHHHHHHHHHHHHhcC
Confidence 5543 4566666666777777665 3444555555543 34445555555555443
No 255
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=89.30 E-value=11 Score=35.79 Aligned_cols=56 Identities=11% Similarity=0.061 Sum_probs=24.0
Q ss_pred HHHHHhccCcHHHHHHHHHHchHhhCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHh
Q 007400 425 ILNACTHSGLVQEGLTYFESMTHDLGIIPN----QEHHACLIELLAQAGCSDQLMNQLEK 480 (605)
Q Consensus 425 l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~ 480 (605)
++..|...|++.+|..++.++.++..-..+ .+++..-++.|...|++.++...+.+
T Consensus 105 L~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~ 164 (394)
T 3txn_A 105 LIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTS 164 (394)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 344444555555555555444432211111 22333444445555555555544433
No 256
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=88.83 E-value=5.1 Score=28.77 Aligned_cols=60 Identities=20% Similarity=0.194 Sum_probs=42.7
Q ss_pred HHHHhcCChHHHHHHHhhCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChHHHH
Q 007400 259 SGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFS 321 (605)
Q Consensus 259 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~ 321 (605)
..+.+.|++++|..+.+....||...|.+|.. .+.|..+++...+.++...| .|....|.
T Consensus 47 sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~sg-~p~~q~Fa 106 (115)
T 2uwj_G 47 SSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLGGSS-DPALADFA 106 (115)
T ss_dssp HHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHHTCS-SHHHHHHH
T ss_pred HHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHhCC-CHHHHHHH
Confidence 34566777777778888888888888776654 47788888888887777766 45444443
No 257
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=88.79 E-value=9.7 Score=31.96 Aligned_cols=131 Identities=12% Similarity=0.109 Sum_probs=69.2
Q ss_pred HHHHhcCChHHHHHHHhhcCCCCcchHHHHHHHHHhcCChHHHHHHHhhCCCCChhhHHHHHHHHHhCCChHHHHHHHHH
Q 007400 228 DAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTR 307 (605)
Q Consensus 228 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 307 (605)
.++.+.|..+....+.+.+..+++..-...+.++.+.++.+....+...+..++...-...+.++.+.+.. .+...+..
T Consensus 67 ~~L~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~-~~~~~L~~ 145 (201)
T 3ltj_A 67 DALGQIGDERAVEPLIKALKDEDGWVRQSAAVALGQIGDERAVEPLIKALKDEDWFVRIAAAFALGEIGDE-RAVEPLIK 145 (201)
T ss_dssp HHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHTCG-GGHHHHHH
T ss_pred HHHHhhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCH-HHHHHHHH
Confidence 33333343333333333333444444445555555555554444555555667776666777777777764 34445555
Q ss_pred HHHCCCCCChHHHHHHHHHHhcccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcC
Q 007400 308 MMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCG 366 (605)
Q Consensus 308 m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 366 (605)
+.. .++...-...+.++...|.. .+...+..+.+. ++..+-...+.++.+.+
T Consensus 146 ~l~---d~~~~vr~~A~~aL~~~~~~-~~~~~L~~~l~d---~~~~vr~~A~~aL~~l~ 197 (201)
T 3ltj_A 146 ALK---DEDGWVRQSAADALGEIGGE-RVRAAMEKLAET---GTGFARKVAVNYLETHK 197 (201)
T ss_dssp HTT---CSSHHHHHHHHHHHHHHCSH-HHHHHHHHHHHH---CCHHHHHHHHHHHHHCC
T ss_pred HHc---CCCHHHHHHHHHHHHHhCch-hHHHHHHHHHhC---CCHHHHHHHHHHHHHHH
Confidence 553 35666666677777777654 344455555443 34444445555554433
No 258
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=88.61 E-value=15 Score=33.79 Aligned_cols=139 Identities=11% Similarity=0.028 Sum_probs=79.2
Q ss_pred HHHHHccCCh---HHHHHHHhhcCCCCceeHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCChH
Q 007400 126 LSGYANLGMM---KHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELK 202 (605)
Q Consensus 126 i~~~~~~~~~---~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~ 202 (605)
+......|++ =+|.+. |.++..=|.+++++++|++++..--. .+.+.|+..
T Consensus 19 l~~~I~~G~y~~~YEAHQ~-----------~RTi~~Ry~~~k~y~eAidLL~~GA~---------------~ll~~~Q~~ 72 (336)
T 3lpz_A 19 LQRRIAEGQPEEQYEAAQE-----------TRLVAARYSKQGNWAAAVDILASVSQ---------------TLLRSGQGG 72 (336)
T ss_dssp HHHHHHHCCHHHHHHHHHH-----------HHHHHHHHHHTTCHHHHHHHHHHHHH---------------HHHHTTCHH
T ss_pred HHHHHhCCCCccccHHHHH-----------HHHHHHHHHhhcCHHHHHHHHHHHHH---------------HHHHCCCcc
Confidence 3455667777 566544 44566678889999999998755322 222334443
Q ss_pred H----HHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChH--------HHHHHHhhc---CCCCcchHHHHHHHHHhcCCh
Q 007400 203 L----TRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELS--------DARRLFDET---DARDVLTWTTMVSGYAKLGDM 267 (605)
Q Consensus 203 ~----a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--------~a~~~~~~~---~~~~~~~~~~li~~~~~~~~~ 267 (605)
. +.-+++...+.+.++|......|+..+.....-+ +|...-.+. ..-|+.....+...|.+.+++
T Consensus 73 sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~ 152 (336)
T 3lpz_A 73 SGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEF 152 (336)
T ss_dssp HHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCH
T ss_pred hHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCH
Confidence 3 3334466666788888877777777776655422 122221211 112555666666677777777
Q ss_pred HHHHHHHhhCCCCChhhHHHHHH
Q 007400 268 ESASKLFNEMPEKNPVSWTTLIA 290 (605)
Q Consensus 268 ~~A~~~~~~~~~~~~~~~~~l~~ 290 (605)
.+|+..|-.-..+++..+..++.
T Consensus 153 ~~Ae~H~ilg~~~s~~~~a~mL~ 175 (336)
T 3lpz_A 153 EAAEKHLVLGTKESPEVLARMEY 175 (336)
T ss_dssp HHHHHHHTTSCTTHHHHHHHHHH
T ss_pred HHHHHHHHhcCCchHHHHHHHHH
Confidence 77777764322222344444433
No 259
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=88.45 E-value=7.3 Score=40.50 Aligned_cols=52 Identities=15% Similarity=0.073 Sum_probs=35.7
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHc
Q 007400 392 SALTQHGYDEQAIRLFHDMVRSSVKPD-KITLAVILNACTHSGLVQEGLTYFESM 445 (605)
Q Consensus 392 ~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~ 445 (605)
..+...|+++-|+++-++.+. ..|+ ..+|..|..+|...|+++.|+-.+..+
T Consensus 345 ~FLl~K~~~elAL~~Ak~AV~--~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 345 NFLLNRGDYELALGVSNTSTE--LALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH--HCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHhccCcHHHHHHHHHHHHh--cCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 345556777777777777776 4564 447777777777777777777776665
No 260
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=88.39 E-value=5.5 Score=28.65 Aligned_cols=59 Identities=27% Similarity=0.351 Sum_probs=39.5
Q ss_pred HHHHhcCChHHHHHHHhhCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChHHH
Q 007400 259 SGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTF 320 (605)
Q Consensus 259 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~ 320 (605)
..+.+.|++++|..+.+...-||...|.+|.. .+.|..+++...+.++...| .|....|
T Consensus 48 sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~sg-~p~~q~F 106 (116)
T 2p58_C 48 SSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRLARSQ-DPRIQTF 106 (116)
T ss_dssp HHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHHTTCC-CHHHHHH
T ss_pred HHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHhCC-CHHHHHH
Confidence 34556677777777777777777777766654 46677777777777776665 4444444
No 261
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=88.27 E-value=3 Score=39.77 Aligned_cols=70 Identities=17% Similarity=0.192 Sum_probs=55.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHchH----hhCCCCCHHHH
Q 007400 387 WNTMISALTQHGYDEQAIRLFHDMVRSSVKP-DKITLAVILNACTHSGLVQEGLTYFESMTH----DLGIIPNQEHH 458 (605)
Q Consensus 387 ~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~p~~~~~ 458 (605)
...++..+...|++++|+..+..+.. ..| +...+..++.++...|+..+|++.|+++.+ +.|+.|...+-
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~--~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~ 248 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTF--EHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLR 248 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Confidence 34456677788999999988888887 345 677899999999999999999998888653 45888887653
No 262
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=87.45 E-value=6.2 Score=34.76 Aligned_cols=125 Identities=12% Similarity=0.114 Sum_probs=74.9
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHchHhhCCCCCHHHHHHHHHHHHhcCCh
Q 007400 393 ALTQHGYDEQAIRLFHDMVRSSVKP-DKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCS 471 (605)
Q Consensus 393 ~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 471 (605)
.+.+.|+.++|++.+..-++. .| |...-..++..++-.|++++|..-++... .+.|+...-..+.+.+.++
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~--~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a---~l~p~~~~~a~~yr~lI~a--- 77 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKA--SPKDASLRSSFIELLCIDGDFERADEQLMQSI---KLFPEYLPGASQLRHLVKA--- 77 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHT--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH---HHCGGGHHHHHHHHHHHHH---
T ss_pred HHHhCCCHHHHHHHHHHHHHh--CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH---HhCchhhHHHHHHHHHHHH---
Confidence 455678888888888887775 44 66677777888888888888888888776 4455533222222222111
Q ss_pred HHHH-HHHHhC--C--CCCCHHHHHHHHHHH--HhcCCHHHHHHHHHHHHhcCCCCCchHH
Q 007400 472 DQLM-NQLEKM--P--YEHDSYLWNALHGVC--RIHGNIDMGRKVVDQLIDQNPQSSATHG 525 (605)
Q Consensus 472 ~~A~-~~~~~~--~--~~~~~~~~~~l~~~~--~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 525 (605)
+... ++|..- + ......-...++.+. ...|+.++|.++-.++.+..|..+....
T Consensus 78 E~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~~~G~~~ 138 (273)
T 1zbp_A 78 AQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGFLAN 138 (273)
T ss_dssp HHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCEEET
T ss_pred HHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCcccCCCcC
Confidence 1222 122211 1 111222223344443 4569999999999999999887666443
No 263
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=86.83 E-value=8.6 Score=42.78 Aligned_cols=60 Identities=8% Similarity=-0.076 Sum_probs=25.9
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHchHhhCCCCC---HHHHHHHHHHHHhcCChHHHHHHHHhC
Q 007400 422 LAVILNACTHSGLVQEGLTYFESMTHDLGIIPN---QEHHACLIELLAQAGCSDQLMNQLEKM 481 (605)
Q Consensus 422 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~ 481 (605)
|..++..+.+.+.++.+.++-+.+....+-.++ ...|..+.+.+...|++++|...+-.+
T Consensus 902 Y~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~ 964 (1139)
T 4fhn_B 902 YLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVL 964 (1139)
T ss_dssp HHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhC
Confidence 444444444455555555444444322111111 113444555555555555555544433
No 264
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=86.38 E-value=11 Score=41.98 Aligned_cols=143 Identities=9% Similarity=-0.020 Sum_probs=79.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHchHhhCCCCCHHHHHHHHHHHHhc
Q 007400 389 TMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQA 468 (605)
Q Consensus 389 ~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 468 (605)
.++..+...+..+-+.++.. . ++-++..-..+..++...|++++|..+|++.. . ++..+....
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~-~----~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa-~-~~~~~~~l~---------- 879 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIG-W----LNSDPIAVYLKALIYLKSKEAVKAVRCFKTTS-L-VLYSHTSQF---------- 879 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHH-H----SCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCC-C-SCTTCCCSC----------
T ss_pred HHHHHHHHhhhHHHHHHHhh-h----ccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHh-h-hhcccchhh----------
Confidence 34555555666655544322 1 22344444455566667777777777776653 1 222211000
Q ss_pred CChHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc-----hHHHHHHHHHhcCCchHHHH
Q 007400 469 GCSDQLMNQLEKMP-YEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSA-----THGLLSSIYSALGKGRLVEK 542 (605)
Q Consensus 469 g~~~~A~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~-----~~~~l~~~~~~~g~~~~a~~ 542 (605)
........+..... ...-...|..++..+.+++.++.+.++.+.+++..+.+.. .|..+...+...|++++|-.
T Consensus 880 ~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~ 959 (1139)
T 4fhn_B 880 AVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHV 959 (1139)
T ss_dssp SSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGH
T ss_pred hhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHH
Confidence 00011111111111 1123455677778888888888888888888876432322 46677888888899998877
Q ss_pred HHHHHH
Q 007400 543 VRQLIN 548 (605)
Q Consensus 543 ~~~~~~ 548 (605)
.+-.+.
T Consensus 960 aL~~~p 965 (1139)
T 4fhn_B 960 ALMVLS 965 (1139)
T ss_dssp HHHHHH
T ss_pred HHHhCC
Confidence 776554
No 265
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=85.74 E-value=8.2 Score=27.93 Aligned_cols=80 Identities=10% Similarity=0.112 Sum_probs=59.5
Q ss_pred ChHHHHHHHHHHHhc-C-ChhHHHHHHHHHHHcCCCCChhhHHHHHHHhhhcCChhHHHHHHHHHHHhCCCCCchhhHHH
Q 007400 16 PNNCLIQSFLSLISK-G-QLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNH 93 (605)
Q Consensus 16 ~~~~~~~~~~~~~~~-g-~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 93 (605)
++..+-.-+..+... . +.-+...-+..+...++-|++......+++|.+-.++..|.++++.+...-... .. +|..
T Consensus 7 t~eeF~aRy~~~F~~~~iD~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~-~~-iY~~ 84 (109)
T 1v54_E 7 TDEEFDARWVTYFNKPDIDAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPH-KE-IYPY 84 (109)
T ss_dssp CHHHHHHHHHHHHTCTTCCHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTC-TT-HHHH
T ss_pred cHHHHHHHHHHHcCCcCccHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCc-hh-hHHH
Confidence 444555555544333 3 556677777888888899999999999999999999999999999988765444 33 6777
Q ss_pred HHHH
Q 007400 94 LISM 97 (605)
Q Consensus 94 l~~~ 97 (605)
+++-
T Consensus 85 ~lqE 88 (109)
T 1v54_E 85 VIQE 88 (109)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7664
No 266
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=85.60 E-value=4.9 Score=29.08 Aligned_cols=63 Identities=14% Similarity=0.186 Sum_probs=47.7
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHchHhhCCCCCHHHHHHHHH
Q 007400 399 YDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIE 463 (605)
Q Consensus 399 ~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 463 (605)
+.-+..+-+..+....+.|++......+.+|.+.+++..|.++++-+..+.+-. ..+|..+++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~--~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPH--KEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTC--TTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCc--hhhHHHHHH
Confidence 344566777777777889999999999999999999999999999887544333 445665553
No 267
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=84.00 E-value=2.1 Score=37.63 Aligned_cols=58 Identities=17% Similarity=0.169 Sum_probs=44.4
Q ss_pred HHHHhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 007400 463 ELLAQAGCSDQLMNQLEKM-P-YEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQS 520 (605)
Q Consensus 463 ~~~~~~g~~~~A~~~~~~~-~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 520 (605)
..+.+.|++++|++.+..- . .+.|......+...++-.|++++|..-++.+.+++|+.
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~ 64 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEY 64 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGG
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchh
Confidence 3456788888888877653 2 34577777788888888899999999998888888843
No 268
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=83.88 E-value=49 Score=35.34 Aligned_cols=251 Identities=11% Similarity=0.014 Sum_probs=135.8
Q ss_pred HHhcCChHHHHHHHhhCCC----CChh--hHHHHHHHHHhCCChHHHHHHHHHHHHCCC--C-----CChHHHHHHHHHH
Q 007400 261 YAKLGDMESASKLFNEMPE----KNPV--SWTTLIAGYTRNGLGQKALELFTRMMILRI--R-----PNQHTFSSCLCAC 327 (605)
Q Consensus 261 ~~~~~~~~~A~~~~~~~~~----~~~~--~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~--~-----p~~~~~~~ll~~~ 327 (605)
....|+.++++.+++.... .+.. .-..+.-+....|..+++..++.......- . +....-..+.-++
T Consensus 384 lIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGl 463 (963)
T 4ady_A 384 VIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGL 463 (963)
T ss_dssp HHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHH
T ss_pred hhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHH
Confidence 5567888888888888764 2222 233344556667776778887777664321 0 1111122222233
Q ss_pred hcccc-hHHHHHHHHHHHHcCCCCCh--hHHHHHHHHHHhcCChHHHHHHHHhcCCCCCcchHHH--HHHHHHHcCCHHH
Q 007400 328 ASIVS-LKHGKQVHGFLIRTNFRSNT--IVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNT--MISALTQHGYDEQ 402 (605)
Q Consensus 328 ~~~~~-~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~--l~~~~~~~g~~~~ 402 (605)
...|. -+++...+..++...- ... ..--+|...+...|+.+....++..+.+..+...... +.-++...|+.+.
T Consensus 464 a~~GS~~eev~e~L~~~L~dd~-~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e~ 542 (963)
T 4ady_A 464 AAMGSANIEVYEALKEVLYNDS-ATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQEL 542 (963)
T ss_dssp HSTTCCCHHHHHHHHHHHHTCC-HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGGG
T ss_pred HhcCCCCHHHHHHHHHHHhcCC-HHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChHH
Confidence 33332 2445555555554321 111 1222344455677887777777775443323333333 3334556788888
Q ss_pred HHHHHHHHHHCCCCCCHH--HHHHHHHHHhccCcHHHHHHHHHHchHhhCCCCCHHHHHHHHHHHHhcCChHHHHHHHHh
Q 007400 403 AIRLFHDMVRSSVKPDKI--TLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEK 480 (605)
Q Consensus 403 a~~~~~~m~~~~~~p~~~--~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 480 (605)
+..+++.+... ..|... ....+.-+|+..|+......++..+..+ ...+..-...+.-++...|+.+.+..+++.
T Consensus 543 ~~~li~~L~~~-~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d--~~d~VRraAViaLGlI~~g~~e~v~rlv~~ 619 (963)
T 4ady_A 543 ADDLITKMLAS-DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSD--SNDDVRRAAVIALGFVLLRDYTTVPRIVQL 619 (963)
T ss_dssp GHHHHHHHHHC-SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHC--SCHHHHHHHHHHHHHHTSSSCSSHHHHTTT
T ss_pred HHHHHHHHHhC-CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccC--CcHHHHHHHHHHHHhhccCCHHHHHHHHHH
Confidence 88888888763 122222 2234455778889987777788888732 223333334444455557777767777765
Q ss_pred CCCCCCHHHHHHHHHHH--HhcCCH-HHHHHHHHHHHh
Q 007400 481 MPYEHDSYLWNALHGVC--RIHGNI-DMGRKVVDQLID 515 (605)
Q Consensus 481 ~~~~~~~~~~~~l~~~~--~~~g~~-~~A~~~~~~~~~ 515 (605)
+....|+.+......++ ...|+. .++...+.++..
T Consensus 620 L~~~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~ 657 (963)
T 4ady_A 620 LSKSHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK 657 (963)
T ss_dssp GGGCSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT
T ss_pred HHhcCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc
Confidence 54334555554433333 333332 567777777753
No 269
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=81.91 E-value=21 Score=29.76 Aligned_cols=51 Identities=10% Similarity=-0.000 Sum_probs=33.0
Q ss_pred cCCHHHHHHHHHHHHhc--CCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 007400 500 HGNIDMGRKVVDQLIDQ--NPQSSATHGLLSSIYSALGKGRLVEKVRQLINER 550 (605)
Q Consensus 500 ~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 550 (605)
.++...+..+|..+... .-..+..|..++..+...|++.+|.++|+.-.++
T Consensus 92 ~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~ 144 (202)
T 3esl_A 92 SNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAEN 144 (202)
T ss_dssp TTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred ccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 34466777777777665 3334556667777777777777777777765544
No 270
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=78.99 E-value=35 Score=30.34 Aligned_cols=80 Identities=8% Similarity=-0.046 Sum_probs=31.9
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHhhcCCCCcchHHHHHHHHHhcC--ChHHHHHHHhhCCCCChhhHHHHHHHHHhC
Q 007400 218 SNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLG--DMESASKLFNEMPEKNPVSWTTLIAGYTRN 295 (605)
Q Consensus 218 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~--~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~ 295 (605)
++..+-...+.++...|+.+....+.+-+..++...-...+.++...+ ..+....+...+..++..+-...+.++.+.
T Consensus 140 ~~~~vR~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~~~L~~~l~d~~~~vR~~A~~aL~~~ 219 (280)
T 1oyz_A 140 KSTNVRRATAFAISVINDKATIPLLINLLKDPNGDVRNWAAFAININKYDNSDIRDCFVEMLQDKNEEVRIEAIIGLSYR 219 (280)
T ss_dssp SCHHHHHHHHHHHHTC---CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHh
Confidence 444444455555555554332333333333334433333344444333 222222223333344444444455555555
Q ss_pred CC
Q 007400 296 GL 297 (605)
Q Consensus 296 g~ 297 (605)
|+
T Consensus 220 ~~ 221 (280)
T 1oyz_A 220 KD 221 (280)
T ss_dssp TC
T ss_pred CC
Confidence 54
No 271
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=78.27 E-value=21 Score=27.46 Aligned_cols=63 Identities=11% Similarity=0.084 Sum_probs=43.8
Q ss_pred hhHHHHHHHHHHHcCCCCChhhHHHHHHHhhhcCChhHHHHHHHHHHHhCCCCCchhhHHHHHHH
Q 007400 33 LSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISM 97 (605)
Q Consensus 33 ~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 97 (605)
..+...-+..+...++-|++......+++|.+-.|+..|.++++.++.+-... .. +|..+++-
T Consensus 69 ~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~~~-~~-iY~y~lqE 131 (152)
T 2y69_E 69 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPH-KE-IYPYVIQE 131 (152)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTC-TT-HHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCc-hh-hHHHHHHH
Confidence 44455555556666777888888888888888888888888888777665333 33 56666653
No 272
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=77.88 E-value=12 Score=28.85 Aligned_cols=60 Identities=17% Similarity=0.311 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHchHhhCCCCCHHHHHHHHH
Q 007400 402 QAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIE 463 (605)
Q Consensus 402 ~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 463 (605)
+..+-++.+....+.|++......+.+|.+.+++..|.++|+-++.+.+ +...+|..+++
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~--~~~~iY~y~lq 130 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAG--PHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT--TCTTHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcC--CchhhHHHHHH
Confidence 4566677777778899999999999999999999999999998875433 33556666653
No 273
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=77.75 E-value=38 Score=30.09 Aligned_cols=22 Identities=18% Similarity=0.306 Sum_probs=11.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Q 007400 390 MISALTQHGYDEQAIRLFHDMVR 412 (605)
Q Consensus 390 l~~~~~~~g~~~~a~~~~~~m~~ 412 (605)
.+.++...|.. .+...+.++..
T Consensus 241 a~~aL~~i~~~-~~~~~L~~~l~ 262 (280)
T 1oyz_A 241 IIEAAGELGDK-TLLPVLDTMLY 262 (280)
T ss_dssp HHHHHHHHCCG-GGHHHHHHHHT
T ss_pred HHHHHHhcCch-hhhHHHHHHHh
Confidence 34455555553 45555555554
No 274
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=75.90 E-value=19 Score=25.86 Aligned_cols=71 Identities=13% Similarity=-0.015 Sum_probs=36.6
Q ss_pred ChhHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCChhHHHHHhccCCCCCchHHHHHHHHHHccCChHHHHHHH
Q 007400 67 SLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLF 142 (605)
Q Consensus 67 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~ 142 (605)
..++|..|-+.+...+. ... +--+-++.+...|++++|..+.+....||...|.++-. .+.|--+++...+
T Consensus 21 ~HqEA~tIAdwL~~~~~--~E~-v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL 91 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ--DEA-ARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRL 91 (115)
T ss_dssp CHHHHHHHHHHHHHTTC--HHH-HHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc--HHH-HHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHH
Confidence 45566666555554443 222 33334445556666666666666666666665555433 2344444444444
No 275
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=74.95 E-value=21 Score=25.75 Aligned_cols=74 Identities=12% Similarity=0.098 Sum_probs=39.3
Q ss_pred ChhHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCChhHHHHHhccCCCCCchHHHHHHHHHHccCChHHHHHHHhhc
Q 007400 67 SLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNM 145 (605)
Q Consensus 67 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~ 145 (605)
..++|..|-+.+...+. ... +--+-+..+...|++++|..+.+....||...|.++-.. +.|--+++...+.++
T Consensus 22 ~HqEA~tIAdwL~~~~~--~E~-v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce~--rlGl~s~le~rL~~l 95 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE--EEA-VQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCEY--RLGLGSALESRLNRL 95 (116)
T ss_dssp CHHHHHHHHHHHHHTTC--HHH-HHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHHH--HHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc--HHH-HHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHHH--hcccHHHHHHHHHHH
Confidence 45566666665555443 222 333344455666666666666666666666666555432 344444444444333
No 276
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=72.84 E-value=86 Score=31.86 Aligned_cols=456 Identities=9% Similarity=-0.030 Sum_probs=239.1
Q ss_pred hhHHHHHHHhhhcCChhHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCChhHHHHHhccCCC-CC-chHHHHHHHHHH
Q 007400 53 ETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPV-KN-LFSYNNMLSGYA 130 (605)
Q Consensus 53 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~-~~~~~~li~~~~ 130 (605)
..|.....++ +.|++..+..+...+. ..+..+-. .|..+...+ .....+++...+++.+. |- ...-+..+..+.
T Consensus 8 ~~~~~a~~a~-~~~~~~~~~~l~~~l~-~~pL~~yl-~y~~l~~~l-~~~~~~ev~~Fl~~~~~~p~~~~Lr~~~l~~l~ 83 (618)
T 1qsa_A 8 SRYAQIKQAW-DNRQMDVVEQMMPGLK-DYPLYPYL-EYRQITDDL-MNQPAVTVTNFVRANPTLPPARTLQSRFVNELA 83 (618)
T ss_dssp HHHHHHHHHH-HTTCHHHHHHHSGGGT-TSTTHHHH-HHHHHHHTG-GGCCHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-HCCCHHHHHHHHHhhc-CCCcHHHH-HHHHHHhCc-ccCCHHHHHHHHHHCCCChhHHHHHHHHHHHHH
Confidence 3455555554 5678877777654432 12111111 232222211 12256677777776664 21 123345567777
Q ss_pred ccCChHHHHHHHhhcCCCCceeHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCChHHHHHHHHH
Q 007400 131 NLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQ 210 (605)
Q Consensus 131 ~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 210 (605)
+.+++......+.. ...+...-.....+....|+..+|....+.+-..|- ..+..+ ..++..
T Consensus 84 ~~~~w~~~l~~~~~-~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~-~~p~~c----------------~~l~~~ 145 (618)
T 1qsa_A 84 RREDWRGLLAFSPE-KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGK-SQPNAC----------------DKLFSV 145 (618)
T ss_dssp HTTCHHHHHHHCCS-CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSS-CCCTHH----------------HHHHHH
T ss_pred hCCCHHHHHHhccC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCC-CCcHHH----------------HHHHHH
Confidence 88888888887766 322333334456677778887777776666654442 223333 344444
Q ss_pred HHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhcCCCCcchHHHHHHHHHhcCChHHHHHHHhhCCCCChh---hHHH
Q 007400 211 VLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPV---SWTT 287 (605)
Q Consensus 211 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~ 287 (605)
..+.|......++. -+......|+...|..+...+..........++..+.. ...+....... .++.. .+..
T Consensus 146 ~~~~g~lt~~~~~~-R~~~al~~~~~~~a~~l~~~l~~~~~~~a~~~~al~~~---p~~~~~~~~~~-~~~~~~~~~~~~ 220 (618)
T 1qsa_A 146 WRASGKQDPLAYLE-RIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANN---PNTVLTFARTT-GATDFTRQMAAV 220 (618)
T ss_dssp HHHTTCSCHHHHHH-HHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHC---GGGHHHHHHHS-CCCHHHHHHHHH
T ss_pred HHHCCCCCHHHHHH-HHHHHHHCCCHHHHHHHHHhCCHHHHHHHHHHHHHHhC---hHhHHHHHhcc-CCChhhHHHHHH
Confidence 44444433333333 33556677888888888777632222222333333332 23333333332 22222 1222
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHCCCCCChHHHH----HHHHHHhcccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHH
Q 007400 288 LIAGYTRNGLGQKALELFTRMMILRIRPNQHTFS----SCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYS 363 (605)
Q Consensus 288 l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~----~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 363 (605)
.+.-+.+ .+.+.|...+....... ..+..... .+.......+...++...+...... ..+.......+....
T Consensus 221 ~~~rlar-~d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~e~~~r~Al 296 (618)
T 1qsa_A 221 AFASVAR-QDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR--SQSTSLIERRVRMAL 296 (618)
T ss_dssp HHHHHHH-HCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT--CCCHHHHHHHHHHHH
T ss_pred HHHHHHh-cCHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc--CCChHHHHHHHHHHH
Confidence 2333333 48899999999887543 23333222 2333334445345555555554433 244444555556666
Q ss_pred hcCChHHHHHHHHhcCCCC--CcchHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHH
Q 007400 364 KCGCLNDGRQVFDLTDNKE--NSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTY 441 (605)
Q Consensus 364 ~~g~~~~A~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~ 441 (605)
+.|+++.|...|+.+...+ ......-+.+++...|+.++|..+|+.+... .+ .|..+.. .+.|..-.
T Consensus 297 r~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~---~~--fYg~lAa--~~Lg~~~~---- 365 (618)
T 1qsa_A 297 GTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQQ---RG--FYPMVAA--QRIGEEYE---- 365 (618)
T ss_dssp HHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS---CS--HHHHHHH--HHTTCCCC----
T ss_pred HCCCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhcC---CC--hHHHHHH--HHcCCCCC----
Confidence 7899999999999998652 2333444667788899999999999998752 22 2333322 12221000
Q ss_pred HHHchHhhCCCCC-H-----HHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 007400 442 FESMTHDLGIIPN-Q-----EHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLID 515 (605)
Q Consensus 442 ~~~~~~~~~~~p~-~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 515 (605)
.. .....+. . .....-+..+...|....|...+.......+......+.......|..+.++....+...
T Consensus 366 ---~~-~~~~~~~~~~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~~~~~~~~~la~~a~~~~~~~~~v~~~~~~~~ 441 (618)
T 1qsa_A 366 ---LK-IDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKSKSKTEQAQLARYAFNNQWWDLSVQATIAGKL 441 (618)
T ss_dssp ---CC-CCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC
T ss_pred ---CC-CCCCChhHHhhhccChHHHHHHHHHHCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCChHHHHHHHHHHHh
Confidence 00 0001110 0 011223456778899999988776653234545455566666678888887766544322
Q ss_pred cCC---CCCchHHHHHHHHHhcCCchHHHHHHHHHHhCCCcC
Q 007400 516 QNP---QSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKK 554 (605)
Q Consensus 516 ~~p---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 554 (605)
.+. .-+..|..+..-+.+.-..+..+-.--...|.+..+
T Consensus 442 ~~~~~~~~P~~y~~~i~~~a~~~gv~~~ll~Ai~~~ES~f~p 483 (618)
T 1qsa_A 442 WDHLEERFPLAYNDLFKRYTSGKEIPQSYAMAIARQESAWNP 483 (618)
T ss_dssp TTCHHHHSCCTTHHHHHHHHTTSSSCHHHHHHHHHHHHTTCT
T ss_pred hcchhhhCCcchHHHHHHHHHHcCCCHHHHHHHHHHhCCCCC
Confidence 110 012345555555555555555443322334455544
No 277
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=71.92 E-value=13 Score=35.88 Aligned_cols=97 Identities=9% Similarity=-0.080 Sum_probs=62.2
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHchHhh-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHhCC----CCCCHHHHHH---
Q 007400 421 TLAVILNACTHSGLVQEGLTYFESMTHDL-GIIPNQEHHACLIELLAQAGCSDQLMNQLEKMP----YEHDSYLWNA--- 492 (605)
Q Consensus 421 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~~--- 492 (605)
+...+..-|.+.|+++.|.+.+.++.... +...-...+-.+++.+...+++..+...+.+.. ..++....+.
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 56677777888888888888888877432 222225677777788888888888877777652 1233222221
Q ss_pred -HHHHHHhcCCHHHHHHHHHHHHhcC
Q 007400 493 -LHGVCRIHGNIDMGRKVVDQLIDQN 517 (605)
Q Consensus 493 -l~~~~~~~g~~~~A~~~~~~~~~~~ 517 (605)
.+..+...+++..|-..|-.+....
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~~~t~ 238 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDSLATF 238 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHhChHHHHHHHHHHHhccC
Confidence 1223345678888888777776653
No 278
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=70.23 E-value=30 Score=27.92 Aligned_cols=80 Identities=14% Similarity=0.151 Sum_probs=54.5
Q ss_pred HHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc----C-------------CCCCc-hHHH
Q 007400 465 LAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQ----N-------------PQSSA-THGL 526 (605)
Q Consensus 465 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~-------------p~~~~-~~~~ 526 (605)
+.-.|.+.+++-++.... ......|..| +|.+.+++..|...++.+++- + |.+.+ .+..
T Consensus 43 LyyngEY~R~Lf~L~~lN-T~Ts~YYk~L--Cy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l 119 (242)
T 3kae_A 43 LYLNGEYTRALFHLHKLN-TCTSKYYESL--CYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESL 119 (242)
T ss_dssp HHHTTCHHHHHHHHHTCC-BHHHHHHHHH--HHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHH
T ss_pred hhhcchHhHHHHHHHhcc-hHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccchHHHHHHH
Confidence 445677788877777654 1222223322 566778888888888888832 2 33333 5667
Q ss_pred HHHHHHhcCCchHHHHHHHHH
Q 007400 527 LSSIYSALGKGRLVEKVRQLI 547 (605)
Q Consensus 527 l~~~~~~~g~~~~a~~~~~~~ 547 (605)
++.++...|+.++|+..+..-
T Consensus 120 ~a~lltq~g~r~EaI~y~~~S 140 (242)
T 3kae_A 120 LGDLCTLSGYREEGIGHYVRS 140 (242)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHhhhHhhhh
Confidence 899999999999999988753
No 279
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=69.87 E-value=33 Score=27.18 Aligned_cols=45 Identities=16% Similarity=-0.012 Sum_probs=26.9
Q ss_pred HHHHHHHHHhc--CCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 007400 506 GRKVVDQLIDQ--NPQSSATHGLLSSIYSALGKGRLVEKVRQLINER 550 (605)
Q Consensus 506 A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 550 (605)
+.++|+.+... .-..+..|...+..+...|++.+|.++|+.-.++
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~ 130 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQN 130 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 55666666554 2334455666666666666666666666655444
No 280
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=69.39 E-value=14 Score=36.13 Aligned_cols=62 Identities=15% Similarity=0.207 Sum_probs=27.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhCCCCCC-------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 007400 457 HHACLIELLAQAGCSDQLMNQLEKMPYEHD-------SYLWNALHGVCRIHGNIDMGRKVVDQLIDQNP 518 (605)
Q Consensus 457 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 518 (605)
.++.+++.|...+.++.|..++.+..++.. ...+..++..+..++++.+|.+.+..++...|
T Consensus 233 l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap 301 (523)
T 4b4t_S 233 LINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAP 301 (523)
T ss_dssp HHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCS
T ss_pred HHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence 444445555555555555555554432211 01111233344445555555555555554443
No 281
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=68.18 E-value=39 Score=27.20 Aligned_cols=44 Identities=14% Similarity=-0.078 Sum_probs=20.4
Q ss_pred HHHHHHHHHhc--CCCCCchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 007400 506 GRKVVDQLIDQ--NPQSSATHGLLSSIYSALGKGRLVEKVRQLINE 549 (605)
Q Consensus 506 A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 549 (605)
+.++|+.+... .-..+..|...+..+...|++.+|.++|+.-.+
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~ 124 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQ 124 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33444444443 222334444555555555555555555554443
No 282
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=66.02 E-value=19 Score=34.78 Aligned_cols=96 Identities=7% Similarity=-0.057 Sum_probs=66.3
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhcCCC-----CCcchHHHHHHHHHHcCCHHHHHHHHHHHHH---CCCCCCHH--HH
Q 007400 353 IVMSSLIDMYSKCGCLNDGRQVFDLTDNK-----ENSMLWNTMISALTQHGYDEQAIRLFHDMVR---SSVKPDKI--TL 422 (605)
Q Consensus 353 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~---~~~~p~~~--~~ 422 (605)
.+...+...|.+.|+++.|.+.|.++... .-...+...++.+...+++..+...+.+... .+-.|+.. ..
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk 211 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYK 211 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHH
Confidence 45677889999999999999999876532 1234677778888889999999988887653 22233322 22
Q ss_pred HHHHHHHhccCcHHHHHHHHHHchHh
Q 007400 423 AVILNACTHSGLVQEGLTYFESMTHD 448 (605)
Q Consensus 423 ~~l~~~~~~~g~~~~a~~~~~~~~~~ 448 (605)
..-+..+...+++..|-..|-++...
T Consensus 212 ~~~gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 212 TYYGIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp HHHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhChHHHHHHHHHHHhcc
Confidence 22333455678888888888888743
No 283
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=63.76 E-value=40 Score=25.86 Aligned_cols=65 Identities=12% Similarity=0.205 Sum_probs=35.0
Q ss_pred HHHHHHHHhcCChHHHHHHHhhCCCCC---hhhHHHHHHHHHhCCC--hHHHHHHHHHHHHCCCCCChHH
Q 007400 255 TTMVSGYAKLGDMESASKLFNEMPEKN---PVSWTTLIAGYTRNGL--GQKALELFTRMMILRIRPNQHT 319 (605)
Q Consensus 255 ~~li~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~g~--~~~a~~~~~~m~~~g~~p~~~~ 319 (605)
..++.-|...|+.++|.+.++++..|. ..+...+..++-+.++ .+.+..++..+...|+-+....
T Consensus 11 ~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~~q~ 80 (129)
T 2nsz_A 11 DMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQM 80 (129)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHHH
Confidence 345555555666666666666665541 1233334444444432 3556777777777665544433
No 284
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=59.61 E-value=1.2e+02 Score=28.67 Aligned_cols=290 Identities=11% Similarity=0.039 Sum_probs=132.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhhcCCC--------CcchHHHHHHHHHhcC-ChHHHHHHHhhCCC---CChhhH----
Q 007400 222 ISSSIVDAYAKCGELSDARRLFDETDAR--------DVLTWTTMVSGYAKLG-DMESASKLFNEMPE---KNPVSW---- 285 (605)
Q Consensus 222 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~--------~~~~~~~li~~~~~~~-~~~~A~~~~~~~~~---~~~~~~---- 285 (605)
....|...|.+.|+.++..+++.....- .......++..+.... ..+.-.++..+..+ .+-.+|
T Consensus 21 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~~ 100 (394)
T 3txn_A 21 GILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQS 100 (394)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455777788888888887777766532 2223444454444422 22222222222211 011112
Q ss_pred --HHHHHHHHhCCChHHHHHHHHHHHHCCCCCChH-----HHHHHHHHHhcccchHHHHHHHHHHHHc--CCCCChhHHH
Q 007400 286 --TTLIAGYTRNGLGQKALELFTRMMILRIRPNQH-----TFSSCLCACASIVSLKHGKQVHGFLIRT--NFRSNTIVMS 356 (605)
Q Consensus 286 --~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~-----~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~ 356 (605)
..++..|...|++.+|.+++.++.+.=-..|.. .+..-+..|...+++.++...+...... .+.+++.+..
T Consensus 101 l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a 180 (394)
T 3txn_A 101 LEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQG 180 (394)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHH
Confidence 245667777777777777777766521111111 2223334444555555555555444321 1112222111
Q ss_pred HHHHHHHhcCChHHHHHHHHhcCCCCCcchHHHHHHHHH-HcCCHHHHHHHHHHHHHC---CCCCC---HHHHHHHHHHH
Q 007400 357 SLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALT-QHGYDEQAIRLFHDMVRS---SVKPD---KITLAVILNAC 429 (605)
Q Consensus 357 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~a~~~~~~m~~~---~~~p~---~~~~~~l~~~~ 429 (605)
.+ . ..-...+. ..+++..|...|-+..+. --.|. ...|..+....
T Consensus 181 ~i-~---------------------------~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL~aLl 232 (394)
T 3txn_A 181 AL-D---------------------------LQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLLCKIM 232 (394)
T ss_dssp HH-H---------------------------HHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred HH-H---------------------------HHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHH
Confidence 11 0 11112234 456666665555444211 00111 11333332222
Q ss_pred hccCcHHHHHHHHH-HchHhhCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHH
Q 007400 430 THSGLVQEGLTYFE-SMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMP--YEHDSYLWNALHGVCRIHGNIDMG 506 (605)
Q Consensus 430 ~~~g~~~~a~~~~~-~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A 506 (605)
. .. ..+...++. ...... ..|....+..++.+| ..+++.+...+++... ...|+.....+-..+.+ --
T Consensus 233 ~-~~-r~el~~~l~~~~~~~~-~~pei~~l~~L~~a~-~~~dl~~f~~iL~~~~~~l~~D~~l~~h~~~L~~~-----Ir 303 (394)
T 3txn_A 233 L-GQ-SDDVNQLVSGKLAITY-SGRDIDAMKSVAEAS-HKRSLADFQAALKEYKKELAEDVIVQAHLGTLYDT-----ML 303 (394)
T ss_dssp T-TC-GGGHHHHHHSHHHHTT-CSHHHHHHHHHHHHH-HTTCHHHHHHHHHHSTTTTTTSHHHHHHHHHHHHH-----HH
T ss_pred c-CC-HHHHHHHhcccccccc-CCccHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHhcChHHHHHHHHHHHH-----HH
Confidence 2 22 112122221 111111 345555666666654 5567777777777653 34565543222211111 01
Q ss_pred HHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCCC
Q 007400 507 RKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQF 552 (605)
Q Consensus 507 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 552 (605)
...+.+++ .|-....+..++..+.- ..++++..+-+|...|.
T Consensus 304 ~~~L~~i~--~pYsrIsl~~iA~~l~l--s~~evE~~L~~lI~dg~ 345 (394)
T 3txn_A 304 EQNLCRII--EPYSRVQVAHVAESIQL--PMPQVEKKLSQMILDKK 345 (394)
T ss_dssp HHHHHHHH--TTCSEEEHHHHHHHHTC--CHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHh--HhhceeeHHHHHHHHCc--CHHHHHHHHHHHHHCCC
Confidence 12222332 46566777777777643 57788888888877764
No 285
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=58.43 E-value=63 Score=26.86 Aligned_cols=63 Identities=10% Similarity=0.004 Sum_probs=43.6
Q ss_pred HHHHHHH---hCCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhcccc-----hHHHHHHHHHHHHcCCCC
Q 007400 287 TLIAGYT---RNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVS-----LKHGKQVHGFLIRTNFRS 350 (605)
Q Consensus 287 ~l~~~~~---~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~-----~~~a~~~~~~~~~~~~~~ 350 (605)
-+|+++. +-.+++.|+-++-+|++.| .|....-..++.+.-..|. ...|...++.....|.+.
T Consensus 16 d~iSAf~KSiRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~PE 86 (204)
T 2r9g_A 16 DVISAFQKSIRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGLGNPAAAARTVNAVLAAEKLGLPE 86 (204)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHHHCTTT
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCCH
Confidence 3455554 4589999999999999999 7777777777777766663 334445555555666543
No 286
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=58.05 E-value=45 Score=27.85 Aligned_cols=50 Identities=4% Similarity=-0.018 Sum_probs=30.9
Q ss_pred CChhHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCChhHHHHHhccCC
Q 007400 66 KSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIP 115 (605)
Q Consensus 66 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 115 (605)
++...+.++|..|...++.......|......+-..|++.+|.++|+.-.
T Consensus 93 ~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI 142 (202)
T 3esl_A 93 NNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGA 142 (202)
T ss_dssp TCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 33556677777777776665555566666666666666666666555443
No 287
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=57.10 E-value=36 Score=27.27 Aligned_cols=62 Identities=10% Similarity=-0.076 Sum_probs=46.4
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC--ChhhHHHHHH-Hh-----hhcCChhHHHHHHHHHHH
Q 007400 19 CLIQSFLSLISKGQLSEAISSLDLLAQRGIRL--PAETLAFILQ-QC-----AESKSLKLGKRVHLHLKL 80 (605)
Q Consensus 19 ~~~~~~~~~~~~g~~~~a~~~~~~~~~~g~~~--~~~~~~~ll~-~~-----~~~~~~~~a~~~~~~~~~ 80 (605)
..+...+.+...|++-+|=++|+........+ ....|..+|+ .. .+.|+...|..++.....
T Consensus 34 ~~~~~~i~lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 34 RAVVHGVRLYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 34445556777799999999999998765455 5667777777 32 257999999999988765
No 288
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=55.52 E-value=1.3e+02 Score=27.90 Aligned_cols=71 Identities=11% Similarity=0.150 Sum_probs=47.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHhhCCCCC---hhhHHHHHHHHHhCCC--hHHHHHHHHHHHHCCCCCChHHHHHHH
Q 007400 254 WTTMVSGYAKLGDMESASKLFNEMPEKN---PVSWTTLIAGYTRNGL--GQKALELFTRMMILRIRPNQHTFSSCL 324 (605)
Q Consensus 254 ~~~li~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~g~--~~~a~~~~~~m~~~g~~p~~~~~~~ll 324 (605)
...++.-|...|+.++|.+.++++..|. ..+..++..++-+.++ .+.+..++..+...|+-+.......+.
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~EL~~p~fhhe~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~q~~~Gf~ 295 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRGYE 295 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHHHH
T ss_pred HHHHHHHhccCCCHHHHHHHHHHccCCcchHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
Confidence 4667788888899999999999988763 2344445555554433 356778888888877665554443333
No 289
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=54.92 E-value=38 Score=26.88 Aligned_cols=64 Identities=13% Similarity=0.212 Sum_probs=33.3
Q ss_pred HHHHHHHHhcCChHHHHHHHhhCCCCC---hhhHHHHHHHHHhCCC--hHHHHHHHHHHHHCCCCCChH
Q 007400 255 TTMVSGYAKLGDMESASKLFNEMPEKN---PVSWTTLIAGYTRNGL--GQKALELFTRMMILRIRPNQH 318 (605)
Q Consensus 255 ~~li~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~g~--~~~a~~~~~~m~~~g~~p~~~ 318 (605)
..++.-|...|+.++|.+.++++..|. ..+...+..++-+.++ .+.+..++..+...|+-+...
T Consensus 13 ~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~~q 81 (152)
T 2ion_A 13 DMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQ 81 (152)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHH
Confidence 344555555566666666666665441 2233334444444322 345667777777666554443
No 290
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=54.15 E-value=79 Score=26.15 Aligned_cols=69 Identities=16% Similarity=0.166 Sum_probs=39.1
Q ss_pred HHHHHHHHhCCCCCCHH-------HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHH
Q 007400 472 DQLMNQLEKMPYEHDSY-------LWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLV 540 (605)
Q Consensus 472 ~~A~~~~~~~~~~~~~~-------~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 540 (605)
+-|+.+++.+....+.. .-.+....|.+.|.+++|.+++++.....|.+...-..|..+-.+..-+...
T Consensus 95 ESAl~v~~~I~~e~~~lheei~~Llk~qAV~VCiekg~Fk~A~eiLkr~f~~~~~~~~lr~kL~~II~~Kd~~H~~ 170 (211)
T 3bqo_A 95 ESALMIWGSIEKEHDKLHEEIQNLIKIQAIAVCMENGNFKEAEEVFERIFGDPNSHMPFKSKLLMIISQKDTFHSF 170 (211)
T ss_dssp HHHHHHHTTSCSCCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHC-----CCTTHHHHHHHHHTTCTTCHH
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHhcCCCCchHHHHHHHHHHHccCCCcHH
Confidence 45666666664333311 1123355788999999999999998888776666666666655544444333
No 291
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=50.49 E-value=51 Score=32.40 Aligned_cols=53 Identities=11% Similarity=0.048 Sum_probs=31.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHH
Q 007400 493 LHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQ 545 (605)
Q Consensus 493 l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 545 (605)
|+...+-...++.|...|.++..+.|++...|+.||.+....|+.-+|.-.|-
T Consensus 158 LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~ 210 (497)
T 1ya0_A 158 LGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYC 210 (497)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHH
Confidence 33334444555666666666666666666666666666666666555554443
No 292
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=50.34 E-value=1.3e+02 Score=26.24 Aligned_cols=23 Identities=13% Similarity=0.109 Sum_probs=13.3
Q ss_pred HHHHHHHccCChHHHHHHHhhcC
Q 007400 124 NMLSGYANLGMMKHARNLFDNMA 146 (605)
Q Consensus 124 ~li~~~~~~~~~~~A~~~~~~~~ 146 (605)
+.+...++.|+++....+++.-.
T Consensus 7 ~~L~~A~~~g~~~~v~~Ll~~g~ 29 (285)
T 1wdy_A 7 HLLIKAVQNEDVDLVQQLLEGGA 29 (285)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTTC
T ss_pred hHHHHHHHcCCHHHHHHHHHcCC
Confidence 34445566666666666666543
No 293
>2pk8_A Uncharacterized protein PF0899; structural genomics, uncharacte protein, PSI, protein structure initiative; 1.85A {Pyrococcus furiosus dsm 3638} SCOP: d.274.1.1
Probab=49.06 E-value=15 Score=25.65 Aligned_cols=24 Identities=13% Similarity=0.032 Sum_probs=21.7
Q ss_pred chHHHHHHHHHHHHHHhhCCCCCC
Q 007400 579 MRDVLYSVLEQLAGQMGEDAPSLD 602 (605)
Q Consensus 579 ~~~~~~~~l~~~~~~~~~~~~~~~ 602 (605)
+..++...+++....++.+|+.||
T Consensus 14 dlirIl~~ieekinELk~dG~ePD 37 (103)
T 2pk8_A 14 DLIRILGEIEEKMNELKMDGFNPD 37 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred cHHHHHHHHHHHHHHHHhcCCCCC
Confidence 566788999999999999999998
No 294
>1zl8_A LIN-7; heterodimer, alpha helix, scaffold, assembly, specifici signaling, protein binding; NMR {Caenorhabditis elegans} SCOP: a.194.1.1
Probab=48.31 E-value=44 Score=20.28 Aligned_cols=46 Identities=13% Similarity=0.102 Sum_probs=26.5
Q ss_pred CChhHHHHHHHHHHHcCCCCChhhHHHHHHHhhhcCChhHHHHHHHHH
Q 007400 31 GQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHL 78 (605)
Q Consensus 31 g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 78 (605)
.+...|+++++++.+.|--| +.-+..+=+.+ ++.-....+++|+.+
T Consensus 7 RDv~RaiELle~lq~sgevp-~~KL~aLq~VL-qSdF~~aVREVYEhv 52 (53)
T 1zl8_A 7 RDVQRILELMEHVQKTGEVN-NAKLASLQQVL-QSEFFGAVREVYETV 52 (53)
T ss_dssp HHHHHHHHHHHHHGGGSSST-HHHHHHHHHHH-SCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCC-cHHHHHHHHHH-HHHHHHHHHHHHHHc
Confidence 46778888888888887433 33333333332 444445566666543
No 295
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=47.69 E-value=1.1e+02 Score=33.24 Aligned_cols=47 Identities=4% Similarity=-0.233 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhc-CCCCCc----hHHHHHHHHHhc
Q 007400 488 YLWNALHGVCRIHGNIDMGRKVVDQLIDQ-NPQSSA----THGLLSSIYSAL 534 (605)
Q Consensus 488 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~p~~~~----~~~~l~~~~~~~ 534 (605)
..|..++..+.+++-++.+.++.+.+++. .++++. .|..+..+.+..
T Consensus 898 ~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~ 949 (950)
T 4gq2_M 898 CYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAA 949 (950)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhC
Confidence 36777888888999999999999999976 454443 344444444443
No 296
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=45.94 E-value=79 Score=27.30 Aligned_cols=86 Identities=13% Similarity=0.113 Sum_probs=39.3
Q ss_pred HHHHHhcCChHHHHHHHHHHHh--CCCCC----ChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHH
Q 007400 157 IIGYAKSGAVEEGLKFYKVLRR--FSISC----NEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAY 230 (605)
Q Consensus 157 i~~~~~~~~~~~a~~~~~~m~~--~~~~p----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 230 (605)
+..+....++++|.+++++..+ .++++ ........++.-.....-.-+..+.+.+ .. .++.......+..+
T Consensus 25 LDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l-~~--~~~~~~~r~~v~~L 101 (235)
T 2d2s_A 25 IDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSI-LS--SNEIVHLKSGTENM 101 (235)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHH-HT--CSSHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHH-Hh--cCCHHHHHHHHHHH
Confidence 4556666667777666665543 12221 1112222232222222222233333333 22 33444455556666
Q ss_pred HhcCChHHHHHHHhh
Q 007400 231 AKCGELSDARRLFDE 245 (605)
Q Consensus 231 ~~~g~~~~a~~~~~~ 245 (605)
.+.|+.++|.++|-+
T Consensus 102 ~rLg~~~~A~~lfL~ 116 (235)
T 2d2s_A 102 IKLGLPEQALDLFLQ 116 (235)
T ss_dssp HHTTCHHHHHHHHHH
T ss_pred HHCCChhHHHHHHHH
Confidence 677777777766543
No 297
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=45.08 E-value=1.1e+02 Score=26.45 Aligned_cols=23 Identities=13% Similarity=-0.175 Sum_probs=16.7
Q ss_pred HHHHHHhCCChHHHHHHHHHHHH
Q 007400 288 LIAGYTRNGLGQKALELFTRMMI 310 (605)
Q Consensus 288 l~~~~~~~g~~~~a~~~~~~m~~ 310 (605)
-+..+....++++|.+++++..+
T Consensus 24 eLDv~IA~r~feeAv~lle~~~~ 46 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIES 46 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHH
Confidence 35667778888888888777654
No 298
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=44.19 E-value=1.3e+02 Score=25.27 Aligned_cols=66 Identities=17% Similarity=0.149 Sum_probs=45.3
Q ss_pred hHHHHHHHHH---hCCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhcccc-----hHHHHHHHHHHHHcCCC
Q 007400 284 SWTTLIAGYT---RNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVS-----LKHGKQVHGFLIRTNFR 349 (605)
Q Consensus 284 ~~~~l~~~~~---~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~-----~~~a~~~~~~~~~~~~~ 349 (605)
.+--+|+++. +-.+++.|+-++-+|++.|-.|....-..++.+.-..|. ...|...++.....|.+
T Consensus 34 ~HYd~ISAf~KSiRGSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~P 107 (213)
T 3ctd_A 34 NHFDVISAFIKSIRGSDPDATLYWLANMVEAGEDPNFIFRRLLISACEDIGLADPNAIVVVQSCCDAFDRVGFP 107 (213)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCC
Confidence 3444555554 458999999999999999988888777777777766653 23444555555555543
No 299
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=44.08 E-value=1.8e+02 Score=26.24 Aligned_cols=196 Identities=14% Similarity=0.110 Sum_probs=92.9
Q ss_pred HHHHHHHHHccCChHHHHHHHhhcCCCCc--eeHHHHHHHHHhcC--ChHHHHHHHHHHHhCCCCCChhhHHHHHHHHhc
Q 007400 122 YNNMLSGYANLGMMKHARNLFDNMAERDV--VSWNTMIIGYAKSG--AVEEGLKFYKVLRRFSISCNEFSFAGILTICVK 197 (605)
Q Consensus 122 ~~~li~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~li~~~~~~~--~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 197 (605)
...+|.-|...|+.++|...++++..|.. .....+|......+ .-+.+-.++..+.. ++-+.......+...+..
T Consensus 6 ~~~ii~EYf~~~d~~Ea~~~l~el~~p~~~~~~v~~~i~~aldr~~~erE~~s~LLs~L~~-~~ls~~~i~~gf~~ll~~ 84 (307)
T 2zu6_B 6 LTPIIQEYFEHGDTNEVAEMLRDLNLGEMKSGVPVLAVSLALEGKASHREMTSKLLSDLCG-TVMSTTDVEKSFDKLLKD 84 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTCCGGGGGGHHHHHHHHHHTSCHHHHHHHHHHHHHHHH-HTBCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHh
Confidence 45788889999999999999999876642 22223334333333 23445566677753 444444433333332222
Q ss_pred cC----ChHHHHHHHHHH----HHhCCCCChhHHHHHHHHHHhcC--ChHHHHHHHhh------cCC----CCc------
Q 007400 198 LE----ELKLTRQVHGQV----LVTGFLSNVVISSSIVDAYAKCG--ELSDARRLFDE------TDA----RDV------ 251 (605)
Q Consensus 198 ~~----~~~~a~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~g--~~~~a~~~~~~------~~~----~~~------ 251 (605)
.. +...|..++..+ +..++-|-.......-..-...| -+..|..++.. +.. .+.
T Consensus 85 ldDl~lD~P~a~~~la~flaraV~d~~l~~~~l~~~~~~~~~~~g~~~l~~a~~~l~~~~~~~~~~~~WG~~~~~~~~ee 164 (307)
T 2zu6_B 85 LPELALDTPRAPQLVGQFIARAVGDGILCNTYIDSYKGTVDCVQARAALDKATVLLSMSKGGKRKDSVWGSGGGQQSVNH 164 (307)
T ss_dssp HHHHHHHCTTHHHHHHHHHHHHHHTTSSCTTTTGGGTTTCCCHHHHHHHHHHHHHHHTCC----CCCSSCCCSTTSCHHH
T ss_pred hhHhcccccchHHHHHHHHHHHHHhCCCCHHHHHHHHhcccchHHHHHHHHHHHHhcccccHhHHhhhcCCCCCCCCHHH
Confidence 22 222333333333 22232221111110000000000 01222222210 100 010
Q ss_pred --chHHHHHHHHHhcCChHHHHHHHhhCCCCC---hhhHHHHHHHHHhCCC--hHHHHHHHHHHHHCCCCCChH
Q 007400 252 --LTWTTMVSGYAKLGDMESASKLFNEMPEKN---PVSWTTLIAGYTRNGL--GQKALELFTRMMILRIRPNQH 318 (605)
Q Consensus 252 --~~~~~li~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~g~--~~~a~~~~~~m~~~g~~p~~~ 318 (605)
.....++.-|...|+.++|.+.++++..|. ..+..++..++-+.++ .+.+..++..+.+.|+-+...
T Consensus 165 lkkki~~lL~EY~~~~D~~EA~~ci~EL~~p~f~~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls~~q 238 (307)
T 2zu6_B 165 LVKEIDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITVDQ 238 (307)
T ss_dssp HHHHHHHHHHHHHHHCCHHHHHHHHHHHCCGGGHHHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSCHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHcCCCcchHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCCHHH
Confidence 124566777777888888888888887662 2233334444444322 344567777777666544443
No 300
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=44.06 E-value=97 Score=25.67 Aligned_cols=45 Identities=18% Similarity=0.146 Sum_probs=34.3
Q ss_pred HHHHHH---hCCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhcccc
Q 007400 288 LIAGYT---RNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVS 332 (605)
Q Consensus 288 l~~~~~---~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~ 332 (605)
+|+++. +-.+++.|+-++-+|++.|-.|....-..++.+.-..|.
T Consensus 10 ~ISAf~KSiRGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsEDIGl 57 (201)
T 3bge_A 10 LISALHKSVRGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVGN 57 (201)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGG
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccC
Confidence 455554 458999999999999999988887777777777665553
No 301
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=43.89 E-value=58 Score=28.32 Aligned_cols=53 Identities=13% Similarity=0.044 Sum_probs=32.7
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCChhh-------HHHHHHHhh--hcCChhHHHHHHHHH
Q 007400 26 SLISKGQLSEAISSLDLLAQRGIRLPAET-------LAFILQQCA--ESKSLKLGKRVHLHL 78 (605)
Q Consensus 26 ~~~~~g~~~~a~~~~~~~~~~g~~~~~~~-------~~~ll~~~~--~~~~~~~a~~~~~~~ 78 (605)
..++.|+.+....+++.+.+.|..++... .+.|..++. +.|+.+-+..+++.-
T Consensus 11 ~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g 72 (260)
T 3jxi_A 11 DIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIA 72 (260)
T ss_dssp HHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhc
Confidence 45567999988888888877776665332 233433332 456666665555543
No 302
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=41.79 E-value=1.7e+02 Score=26.87 Aligned_cols=28 Identities=14% Similarity=0.258 Sum_probs=20.2
Q ss_pred HHHHHHHHHhcCChhHHHHHhccCCCCC
Q 007400 91 SNHLISMYFKCGSDVDARKVFDKIPVKN 118 (605)
Q Consensus 91 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 118 (605)
...++.-|...|+.++|...++++..|.
T Consensus 14 ~~~ll~Ey~~~~d~~Ea~~ci~el~~p~ 41 (339)
T 1ug3_A 14 SKAIIEEYLHLNDMKEAVQCVQELASPS 41 (339)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTCCGG
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCCcc
Confidence 3456677777788888888888887653
No 303
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=41.41 E-value=1.4e+02 Score=24.02 Aligned_cols=67 Identities=7% Similarity=0.014 Sum_probs=41.0
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 007400 451 IIPNQEHHACLIELLAQAGCSDQLMNQLEKMPY-EHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQN 517 (605)
Q Consensus 451 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 517 (605)
..-|+......+..-..++++.+....+..-.+ ..-+..|...+..+...|++.+|.++|+..++..
T Consensus 59 YknD~RyLklWl~ya~~~~~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~ 126 (164)
T 2wvi_A 59 YYSDPRFLNLWLKLGRLCNEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQK 126 (164)
T ss_dssp GTTCHHHHHHHHHHHHHCSCHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred hccCHHHHHHHHHHHHhcCCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 334444333333333334555555555544332 3446677778888888899999999999888863
No 304
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=40.60 E-value=83 Score=24.04 Aligned_cols=64 Identities=13% Similarity=0.266 Sum_probs=38.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhcCCCC--CcchHHHHHHHHHHcCC--HHHHHHHHHHHHHCCCCCC
Q 007400 355 MSSLIDMYSKCGCLNDGRQVFDLTDNKE--NSMLWNTMISALTQHGY--DEQAIRLFHDMVRSSVKPD 418 (605)
Q Consensus 355 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~l~~~~~~~g~--~~~a~~~~~~m~~~~~~p~ 418 (605)
...++.-|...|+.++|.+.++++..+. .......+..++-+.++ .+.+..++..+...|+-+.
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~ 77 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITI 77 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCH
Confidence 3567778888888888888888876430 11223333334444332 3456777777777665443
No 305
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=39.07 E-value=1.4e+02 Score=25.63 Aligned_cols=55 Identities=4% Similarity=-0.075 Sum_probs=33.3
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCChhh-------HHHHHHHHh--ccCChHHHHHHHHHH
Q 007400 157 IIGYAKSGAVEEGLKFYKVLRRFSISCNEFS-------FAGILTICV--KLEELKLTRQVHGQV 211 (605)
Q Consensus 157 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~-------~~~ll~~~~--~~~~~~~a~~~~~~~ 211 (605)
+...++.|+.+....+++.+.+.|..++... .+.|..+.. +.|+.+-+..+++.-
T Consensus 9 L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g 72 (260)
T 3jxi_A 9 LFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIA 72 (260)
T ss_dssp HHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhc
Confidence 4445667888888888887777666655332 233433332 557776666666554
No 306
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=39.03 E-value=1.2e+02 Score=25.55 Aligned_cols=47 Identities=9% Similarity=0.152 Sum_probs=24.5
Q ss_pred HHHHHHHHHHchHhhCCCCCH-HHHH-----HHHHHHHhcCChHHHHHHHHhC
Q 007400 435 VQEGLTYFESMTHDLGIIPNQ-EHHA-----CLIELLAQAGCSDQLMNQLEKM 481 (605)
Q Consensus 435 ~~~a~~~~~~~~~~~~~~p~~-~~~~-----~l~~~~~~~g~~~~A~~~~~~~ 481 (605)
.+.|+.+|+.+.++..+..+. ..-. ..+-.|.+.|.+++|.+++++.
T Consensus 88 LESAl~v~~~I~~e~~l~~~l~e~i~~llk~qAV~VCiek~~f~kA~eiLkr~ 140 (235)
T 3bu8_A 88 LESAINVLEMIKTEFTLTEAVVESSRKLVKEAAVIICIKNKEFEKASKILKKH 140 (235)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 567777777777443222221 1111 2233456666666666666664
No 307
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=36.90 E-value=1.5e+02 Score=23.34 Aligned_cols=65 Identities=14% Similarity=0.124 Sum_probs=39.5
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 007400 452 IPNQEHHACLIELLAQAGCSDQLMNQLEKMPY-EHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQ 516 (605)
Q Consensus 452 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 516 (605)
.-|+......+.......+..+....+..-.+ ..-+..|...+..+...|++.+|.++|+..++.
T Consensus 65 knD~RyLklWl~ya~~~~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~ 130 (152)
T 4a1g_A 65 HNDPRFISYCLKFAEYNSDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQN 130 (152)
T ss_dssp TTCHHHHHHHHHHHTTBSCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHHhcCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 33444333333333333444444444433332 345667788888888999999999999999887
No 308
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=35.71 E-value=1.5e+02 Score=27.37 Aligned_cols=26 Identities=15% Similarity=0.373 Sum_probs=16.5
Q ss_pred HHHHHHHHhcCChHHHHHHHhhcCCC
Q 007400 224 SSIVDAYAKCGELSDARRLFDETDAR 249 (605)
Q Consensus 224 ~~l~~~~~~~g~~~~a~~~~~~~~~~ 249 (605)
..++.=|...|+.++|.+.++++..+
T Consensus 15 ~~ll~Ey~~~~d~~Ea~~ci~el~~p 40 (339)
T 1ug3_A 15 KAIIEEYLHLNDMKEAVQCVQELASP 40 (339)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHTTCCG
T ss_pred HHHHHHHHhCCCHHHHHHHHHHcCCc
Confidence 44566666667777777666666544
No 309
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=35.18 E-value=1.7e+02 Score=24.93 Aligned_cols=46 Identities=11% Similarity=0.050 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCChhHHHHHhccCC
Q 007400 70 LGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIP 115 (605)
Q Consensus 70 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 115 (605)
....+|..|...++.......|......+-..|++.+|..+|+.-.
T Consensus 132 ~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi 177 (223)
T 4aez_C 132 EPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGK 177 (223)
T ss_dssp CHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3445555555555444444445555555555555555555555443
No 310
>3i5p_A Nucleoporin NUP170; helical stack, membrane, mRNA transport, nuclear pore complex, nucleus, phosphoprotein, protein transport; 3.20A {Saccharomyces cerevisiae}
Probab=34.53 E-value=3.5e+02 Score=26.70 Aligned_cols=68 Identities=9% Similarity=-0.011 Sum_probs=37.2
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHH----HHHHH-hcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 007400 484 EHDSYLWNALHGVCRIHGNIDMGRKV----VDQLI-DQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQ 551 (605)
Q Consensus 484 ~~~~~~~~~l~~~~~~~g~~~~A~~~----~~~~~-~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 551 (605)
..|......+-.-+..+|-.++-+++ ++.-+ +..|++......|-.-|.+.|++-+|.+++..+...+
T Consensus 175 s~DelFH~~LYdWli~~gl~d~LL~i~sPfle~yL~r~~~~~~~~~dLLWryy~k~~~~~~AA~VL~~LA~s~ 247 (525)
T 3i5p_A 175 YNDRLFHYHMYDWLVSQNREEKLLDIETPFILPYLMEKAGSSLKISNILWVYYSRRSKFFESAEILYRLATSN 247 (525)
T ss_dssp SCCHHHHHHHHHHHHHTTCGGGGGGCCCTTHHHHHHHTCC---CHHHHHHTHHHHCCSHHHHHHHHHHHHSSS
T ss_pred CChHHHHHHHHHHHHhCCCcchhhcCCCchHHHHHHhcCccchhHHHHHHHHHHHcccHHHHHHHHHHHHhCC
Confidence 34555444555555555544433221 11111 2356566666777777778888888888877776653
No 311
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=34.07 E-value=3.5e+02 Score=26.59 Aligned_cols=62 Identities=5% Similarity=0.065 Sum_probs=44.1
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhcCCCCCcc------hH-HHHHHHHHHcCCHHHHHHHHHHHHHC
Q 007400 352 TIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSM------LW-NTMISALTQHGYDEQAIRLFHDMVRS 413 (605)
Q Consensus 352 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~------~~-~~l~~~~~~~g~~~~a~~~~~~m~~~ 413 (605)
..++|.+++.|...+.++.|..+.....-+.+.. .| .-+.+.+.-.+++.+|.+.+....+.
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rk 299 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRK 299 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 3567788888888899999999888765432211 12 22345667789999999999888764
No 312
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=33.59 E-value=97 Score=24.17 Aligned_cols=62 Identities=10% Similarity=0.013 Sum_probs=33.9
Q ss_pred HHHhCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChH
Q 007400 175 VLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELS 237 (605)
Q Consensus 175 ~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 237 (605)
.+.+.|++++..-. .++..+...+..-.|.++++.+.+.++..+..|...-+..+...|-+.
T Consensus 12 ~l~~~g~r~T~qR~-~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 73 (145)
T 2fe3_A 12 TLKETGVRITPQRH-AILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGLVK 73 (145)
T ss_dssp HHHHTTCCCCHHHH-HHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHcCCCCCHHHH-HHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCCEE
Confidence 34556665554432 233333334455566667766666665555555555566666666543
No 313
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=33.10 E-value=3.2e+02 Score=25.82 Aligned_cols=110 Identities=15% Similarity=0.098 Sum_probs=48.9
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCChhh--HHHHHHHhhhcCChhHHHHHHHHHHHhCCCCCchh-hHHHHHHHHHhcCCh
Q 007400 28 ISKGQLSEAISSLDLLAQRGIRLPAET--LAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTF-LSNHLISMYFKCGSD 104 (605)
Q Consensus 28 ~~~g~~~~a~~~~~~~~~~g~~~~~~~--~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~ 104 (605)
+..|+.+-+ +.+.+.|..|+... ....+...+..|+.+-+.-+ ++.+...+... .-...+...+..|+.
T Consensus 22 a~~g~~~~v----~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~~v~~L----l~~g~~~~~~~~~g~t~L~~A~~~g~~ 93 (437)
T 1n11_A 22 SFMGHLPIV----KNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYL----LQNKAKVNAKAKDDQTPLHCAARIGHT 93 (437)
T ss_dssp HHHTCHHHH----HHHHHTTCCSCCSSSCCCCHHHHHHHHTCHHHHHHH----HHHTCCSSCCCTTSCCHHHHHHHHTCH
T ss_pred HHCCCHHHH----HHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHH----HhCCCCCCCCCCCCCCHHHHHHHCCCH
Confidence 345666543 44445565554321 12233444456665544433 44443322110 111234444566776
Q ss_pred hHHHHHhccCCCCCch--HHHHHHHHHHccCChHHHHHHHhhc
Q 007400 105 VDARKVFDKIPVKNLF--SYNNMLSGYANLGMMKHARNLFDNM 145 (605)
Q Consensus 105 ~~a~~~~~~~~~~~~~--~~~~li~~~~~~~~~~~A~~~~~~~ 145 (605)
+-+.-+++.-..++.. .-.+.+...+..|+.+-...+++.-
T Consensus 94 ~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~ 136 (437)
T 1n11_A 94 NMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKE 136 (437)
T ss_dssp HHHHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTT
T ss_pred HHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCC
Confidence 6666666553332211 0112233444556666666666543
No 314
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=32.68 E-value=1.2e+02 Score=20.63 Aligned_cols=62 Identities=8% Similarity=0.133 Sum_probs=40.2
Q ss_pred HHHHhCCCCCChhhHHHHHHHHhccC-ChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCh
Q 007400 174 KVLRRFSISCNEFSFAGILTICVKLE-ELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGEL 236 (605)
Q Consensus 174 ~~m~~~~~~p~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 236 (605)
+.|.+.|+..+..- ..++..+...+ ..-.+.++++.+.+.++..+..|....+..+...|-+
T Consensus 6 ~~l~~~g~~~t~~r-~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Glv 68 (83)
T 2fu4_A 6 TALKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIV 68 (83)
T ss_dssp HHHHHTTCCCCHHH-HHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSE
T ss_pred HHHHHcCCCcCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCe
Confidence 34566777766544 34555555554 5566778888887776666666766677777766644
No 315
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=32.66 E-value=35 Score=24.55 Aligned_cols=31 Identities=13% Similarity=0.170 Sum_probs=14.4
Q ss_pred ChhHHHHHhccCCCCCchHHHHHHHHHHccC
Q 007400 103 SDVDARKVFDKIPVKNLFSYNNMLSGYANLG 133 (605)
Q Consensus 103 ~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~ 133 (605)
..+.|.++++.++.+++.+|..++.++...|
T Consensus 52 ~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~ 82 (97)
T 3ygs_P 52 RRDQARQLIIDLETRGSQALPLFISCLEDTG 82 (97)
T ss_dssp HHHHHHHHHHHHTTSCTTHHHHHHHHHHTTT
T ss_pred hHHHHHHHHHHHHHcChHHHHHHHHHHHHcC
Confidence 3444444444444444444444444444333
No 316
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=32.32 E-value=74 Score=25.18 Aligned_cols=64 Identities=13% Similarity=0.266 Sum_probs=38.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhcCCCC--CcchHHHHHHHHHHcCC--HHHHHHHHHHHHHCCCCCC
Q 007400 355 MSSLIDMYSKCGCLNDGRQVFDLTDNKE--NSMLWNTMISALTQHGY--DEQAIRLFHDMVRSSVKPD 418 (605)
Q Consensus 355 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~l~~~~~~~g~--~~~a~~~~~~m~~~~~~p~ 418 (605)
...++.-|...|+.++|.+.++++..+. .......+..++-+.++ .+.+..++..+...|+-+.
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~ 79 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITI 79 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCH
Confidence 4567778888888888888888886431 11223333334443322 3456677777777665443
No 317
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=32.09 E-value=2.8e+02 Score=29.93 Aligned_cols=127 Identities=11% Similarity=0.045 Sum_probs=67.1
Q ss_pred HHHHHHccCChHHHHHHHhhcCCCCceeHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCChHHH
Q 007400 125 MLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLT 204 (605)
Q Consensus 125 li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a 204 (605)
++..+...|.++-|.++...++. ++..-..+..+|...|++++|.+.|++.- .|+..+...... ....
T Consensus 816 l~~~L~~~~~~~~a~eL~~~~~~-t~~~~yv~gr~~L~~ge~~~A~~~F~kAA-~gl~~~~~~~~~----------~~~~ 883 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIGWLNS-DPIAVYLKALIYLKSKEAVKAVRCFKTTS-LVLYSHTSQFAV----------LREF 883 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGGGCCS-SHHHHHHHHHHHHHTTCHHHHHHHHHTCC-CTTCSSCCSCGG----------GHHH
T ss_pred HHHHHHHhcHHHHHHHHHhhcCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHh-hhcccCcccccc----------hhhh
Confidence 55666667777777776666554 44444566777888888888888887753 243322111000 0000
Q ss_pred HHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhcC----CCCc----chHHHHHHHHHhcC
Q 007400 205 RQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETD----ARDV----LTWTTMVSGYAKLG 265 (605)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~----~~~~----~~~~~li~~~~~~~ 265 (605)
..++... ........-|..++..+-+.+.++.+.++-+... ..|. ..|..+..+.+..|
T Consensus 884 ~~ll~~~--e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 884 QEIAEKY--HHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp HHHHHHT--TTCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred hhccCcc--cccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 0111000 0001122356777888888888777665543322 2233 24666666655443
No 318
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=31.73 E-value=1.1e+02 Score=23.53 Aligned_cols=62 Identities=13% Similarity=0.106 Sum_probs=39.8
Q ss_pred HHHHHcCCCCChhhHHHHHHHhhhcC-ChhHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCh
Q 007400 41 DLLAQRGIRLPAETLAFILQQCAESK-SLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSD 104 (605)
Q Consensus 41 ~~~~~~g~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 104 (605)
+.+.+.|++++..- ..++..+...+ ..-.|.++++.+.+.++..+...+|. .+..+...|-+
T Consensus 7 ~~l~~~g~r~T~qR-~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR-~L~~L~e~Glv 69 (136)
T 1mzb_A 7 SELRKAGLKVTLPR-VKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYR-VLTQFEAAGLV 69 (136)
T ss_dssp HHHHHTTCCCCHHH-HHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHH-HHHHHHHHTSE
T ss_pred HHHHHCCCCCCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHH-HHHHHHHCCcE
Confidence 34667887776553 34556666655 67789999999988877666663554 44455555543
No 319
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=31.70 E-value=2.1e+02 Score=26.26 Aligned_cols=19 Identities=5% Similarity=-0.139 Sum_probs=9.9
Q ss_pred HHhCCChHHHHHHHHHHHH
Q 007400 292 YTRNGLGQKALELFTRMMI 310 (605)
Q Consensus 292 ~~~~g~~~~a~~~~~~m~~ 310 (605)
.+..|+.+-+..+++....
T Consensus 91 A~~~g~~~~v~~Ll~~~~~ 109 (364)
T 3ljn_A 91 AVMANKTDLVVALVEGAKE 109 (364)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHhccc
Confidence 3455666555555554433
No 320
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=31.58 E-value=1.5e+02 Score=26.19 Aligned_cols=15 Identities=13% Similarity=0.297 Sum_probs=7.3
Q ss_pred HccCChHHHHHHHhh
Q 007400 130 ANLGMMKHARNLFDN 144 (605)
Q Consensus 130 ~~~~~~~~A~~~~~~ 144 (605)
+..|+.+-+.-+++.
T Consensus 103 ~~~g~~~~v~~Ll~~ 117 (285)
T 3kea_A 103 VDSGNMQTVKLFVKK 117 (285)
T ss_dssp HHTTCHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHhc
Confidence 344555555444444
No 321
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=30.73 E-value=2.1e+02 Score=23.10 Aligned_cols=17 Identities=18% Similarity=0.249 Sum_probs=8.8
Q ss_pred HHccCChHHHHHHHhhc
Q 007400 129 YANLGMMKHARNLFDNM 145 (605)
Q Consensus 129 ~~~~~~~~~A~~~~~~~ 145 (605)
.+..|+.+....++..-
T Consensus 12 A~~~g~~~~v~~ll~~~ 28 (201)
T 3hra_A 12 AANQRDTKKVKEILQDT 28 (201)
T ss_dssp HHHTTCHHHHHHHHTCT
T ss_pred HHHhccHHHHHHHHHcC
Confidence 34455555555555543
No 322
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=30.22 E-value=1.1e+02 Score=24.11 Aligned_cols=63 Identities=10% Similarity=0.069 Sum_probs=42.0
Q ss_pred HHHHHHcCCCCChhhHHHHHHHhhhcC-ChhHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCh
Q 007400 40 LDLLAQRGIRLPAETLAFILQQCAESK-SLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSD 104 (605)
Q Consensus 40 ~~~~~~~g~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 104 (605)
.+.+.+.|++++..- ..++..+...+ ..-.|.++++.+.+.++..+...+|. .+..+...|-+
T Consensus 5 ~~~l~~~g~r~T~qR-~~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR-~L~~L~e~Glv 68 (150)
T 2w57_A 5 NQALKDAGLKVTLPR-LKILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYR-VLNQFDDAGIV 68 (150)
T ss_dssp HHHHHHTTCCCCHHH-HHHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHH-HHHHHHHTTSE
T ss_pred HHHHHHcCCCCCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHH-HHHHHHHCCcE
Confidence 345677888776653 34556665555 67789999999988877766663554 44556666644
No 323
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=29.60 E-value=74 Score=22.79 Aligned_cols=36 Identities=19% Similarity=0.205 Sum_probs=21.6
Q ss_pred ChHHHHHHHhhcCCCCcchHHHHHHHHHhcCChHHH
Q 007400 235 ELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESA 270 (605)
Q Consensus 235 ~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A 270 (605)
..++|.++++.+..+++.+|..++.++...|....|
T Consensus 52 ~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~La 87 (97)
T 3ygs_P 52 RRDQARQLIIDLETRGSQALPLFISCLEDTGQDMLA 87 (97)
T ss_dssp HHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHHHH
T ss_pred hHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHHHH
Confidence 456666666666666666666666666555554444
No 324
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*
Probab=29.24 E-value=1.1e+02 Score=31.42 Aligned_cols=62 Identities=19% Similarity=0.169 Sum_probs=47.7
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCC
Q 007400 472 DQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGK 536 (605)
Q Consensus 472 ~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 536 (605)
+.|.++++-|. ........+......|++..|.++.+.++..+|+|..+...++++|.+.|.
T Consensus 437 ~~a~~~v~~~g---g~~~~~~~a~~~~~~g~~~wa~~l~~~~~~~~p~~~~a~~l~a~~~~~l~~ 498 (658)
T 2cfu_A 437 DSAGRYVEYMG---GAERLLEQARASYARGEYRWVVEVVNRLVFAEPDNRAARELQADALEQLGY 498 (658)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhc---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Confidence 45666666665 223333345566688999999999999999999999999999999988774
No 325
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=28.52 E-value=1.2e+02 Score=23.82 Aligned_cols=63 Identities=5% Similarity=0.020 Sum_probs=37.8
Q ss_pred HHHHhCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChH
Q 007400 174 KVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELS 237 (605)
Q Consensus 174 ~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 237 (605)
+.+.+.|++++..-. .++..+...+..-.|.++++.+.+.++..+..|....+..+...|-+.
T Consensus 16 ~~l~~~g~r~T~qR~-~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 78 (150)
T 2xig_A 16 MSIKKNGLKNSKQRE-EVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFIS 78 (150)
T ss_dssp HHHHHCC--CHHHHH-HHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHcCCCCCHHHH-HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCcEE
Confidence 345566665544332 344444445556677778877777776666666666667777777654
No 326
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=28.31 E-value=2.3e+02 Score=23.86 Aligned_cols=29 Identities=7% Similarity=0.145 Sum_probs=21.0
Q ss_pred HHHHHhccCcHHHHHHHHHHchHhhCCCCCHH
Q 007400 425 ILNACTHSGLVQEGLTYFESMTHDLGIIPNQE 456 (605)
Q Consensus 425 l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~ 456 (605)
.+..|.+.|.+++|.+++++.. +-.++..
T Consensus 120 AV~VCiek~~f~kA~eiLkr~~---~~~~s~~ 148 (235)
T 3bu8_A 120 AVIICIKNKEFEKASKILKKHM---SKDPTTQ 148 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHS---TTCGGGH
T ss_pred HHHHHHHhcchHHHHHHHHHHh---cCCCCch
Confidence 4456888899999999998887 3344444
No 327
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=27.64 E-value=2.1e+02 Score=22.81 Aligned_cols=70 Identities=7% Similarity=0.053 Sum_probs=48.3
Q ss_pred HHHHHHHH-HHHhCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHh--CCCCChhHHHHHHHHHHhcCChH
Q 007400 167 EEGLKFYK-VLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVT--GFLSNVVISSSIVDAYAKCGELS 237 (605)
Q Consensus 167 ~~a~~~~~-~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~ 237 (605)
+.+.+-+. .+++.|++++.. -..++..+...+..-.|.++++.+.+. ++..+..|.-.-+..+...|-+.
T Consensus 14 ~~~~~~~~~~L~~~g~r~T~q-R~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv~ 86 (162)
T 4ets_A 14 DVLLERFKKILRQGGLKYTKQ-REVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMVT 86 (162)
T ss_dssp HHHHHHHHHHHHHHTCCCCHH-HHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCEE
Confidence 44444443 345678877654 355666777777888899999999888 77777766666677777777554
No 328
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=27.27 E-value=95 Score=24.85 Aligned_cols=64 Identities=6% Similarity=0.042 Sum_probs=43.4
Q ss_pred HHHHHHhhcCCCCceeHHHHHHHHHhcCChHHHHHHHHHHHhC--CCCCChhhHHHHHHHHhccCC
Q 007400 137 HARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRF--SISCNEFSFAGILTICVKLEE 200 (605)
Q Consensus 137 ~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--~~~p~~~~~~~ll~~~~~~~~ 200 (605)
.+.+.++...-+-+..-..++..+...+.+-.|.++++.+.+. +...+..|...-++.+...|-
T Consensus 19 ~~~~~L~~~g~r~T~qR~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Gl 84 (162)
T 4ets_A 19 RFKKILRQGGLKYTKQREVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEM 84 (162)
T ss_dssp HHHHHHHHHTCCCCHHHHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCC
Confidence 3444444433344455666778888888888999999999887 666677777666666666553
No 329
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=27.23 E-value=1.5e+02 Score=23.05 Aligned_cols=59 Identities=7% Similarity=0.026 Sum_probs=28.9
Q ss_pred HHHCCCCCChHHHHHHHHHHhcccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCC
Q 007400 308 MMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGC 367 (605)
Q Consensus 308 m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 367 (605)
+.+.|++++..-. .++..+...+..-.|.++++.+.+.+...+..|....++.+...|-
T Consensus 13 l~~~g~r~T~qR~-~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 71 (145)
T 2fe3_A 13 LKETGVRITPQRH-AILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGL 71 (145)
T ss_dssp HHHTTCCCCHHHH-HHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTS
T ss_pred HHHcCCCCCHHHH-HHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCC
Confidence 4445555544322 2233333334445566666666555544555555555555555553
No 330
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=27.03 E-value=2.7e+02 Score=23.13 Aligned_cols=68 Identities=10% Similarity=0.012 Sum_probs=43.4
Q ss_pred CceeHHHHHHHHHh---cCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCC-----hHHHHHHHHHHHHhCCC
Q 007400 149 DVVSWNTMIIGYAK---SGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEE-----LKLTRQVHGQVLVTGFL 217 (605)
Q Consensus 149 ~~~~~~~li~~~~~---~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~-----~~~a~~~~~~~~~~~~~ 217 (605)
+-.....+|+++.| -.+++.|+-.+-+|.+.| .|.-..-..++-+.-.-|. ...|...++.....|.+
T Consensus 10 ~Gd~HYd~iSAf~KSiRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~P 85 (204)
T 2r9g_A 10 NGDAHYDVISAFQKSIRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGLGNPAAAARTVNAVLAAEKLGLP 85 (204)
T ss_dssp --CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHHHCTT
T ss_pred CchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCC
Confidence 33445566777654 479999999999999988 6655555555555555553 23455555666666654
No 331
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=25.72 E-value=1.2e+02 Score=23.18 Aligned_cols=44 Identities=9% Similarity=-0.056 Sum_probs=22.4
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccC
Q 007400 156 MIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLE 199 (605)
Q Consensus 156 li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~ 199 (605)
++..+...+.+-.|.++++.+.+.+...+..|....++.+...|
T Consensus 16 Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 59 (131)
T 2o03_A 16 ISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSG 59 (131)
T ss_dssp HHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTT
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 34444444555566666666655554445555444444444433
No 332
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=25.62 E-value=3.2e+02 Score=23.48 Aligned_cols=112 Identities=12% Similarity=0.025 Sum_probs=53.2
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCChh---hHHHHHHHhhhcCChhHHHHHHHHHHHhCCCCCchh-hHHHHHHHHHhc
Q 007400 26 SLISKGQLSEAISSLDLLAQRGIRLPAE---TLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTF-LSNHLISMYFKC 101 (605)
Q Consensus 26 ~~~~~g~~~~a~~~~~~~~~~g~~~~~~---~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~ 101 (605)
..++.|+.+.+ +.+.+.|..++.. .-...+...+..|+.+ +.+.+++.|..+.... .-...+...+..
T Consensus 11 ~A~~~g~~~~v----~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~ 82 (285)
T 1wdy_A 11 KAVQNEDVDLV----QQLLEGGANVNFQEEEGGWTPLHNAVQMSRED----IVELLLRHGADPVLRKKNGATPFLLAAIA 82 (285)
T ss_dssp HHHHTTCHHHH----HHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHH----HHHHHHHTTCCTTCCCTTCCCHHHHHHHH
T ss_pred HHHHcCCHHHH----HHHHHcCCCcccccCCCCCcHHHHHHHcCCHH----HHHHHHHcCCCCcccCCCCCCHHHHHHHc
Confidence 45566776544 4444555444321 1123344445566654 4444455554432210 111233444566
Q ss_pred CChhHHHHHhccCCCCC---chHHHHHHHHHHccCChHHHHHHHhhcC
Q 007400 102 GSDVDARKVFDKIPVKN---LFSYNNMLSGYANLGMMKHARNLFDNMA 146 (605)
Q Consensus 102 g~~~~a~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~A~~~~~~~~ 146 (605)
|+.+-+..+++.-..++ ...+ +.+...+..|+.+-...+++.-.
T Consensus 83 ~~~~~v~~Ll~~g~~~~~~~~~g~-t~L~~A~~~~~~~~~~~Ll~~g~ 129 (285)
T 1wdy_A 83 GSVKLLKLFLSKGADVNECDFYGF-TAFMEAAVYGKVKALKFLYKRGA 129 (285)
T ss_dssp TCHHHHHHHHHTTCCTTCBCTTCC-BHHHHHHHTTCHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHcCCCCCccCcccC-CHHHHHHHhCCHHHHHHHHHhCC
Confidence 77776666666533222 1111 23334456677766666666543
No 333
>2p1h_A APAF-1, apoptotic protease-activating factor 1; folding, unfolding, apoptosis; 1.59A {Homo sapiens} SCOP: a.77.1.3 PDB: 1cww_A 1c15_A 1cy5_A 3ygs_C 2ygs_A
Probab=24.60 E-value=1.8e+02 Score=20.35 Aligned_cols=33 Identities=18% Similarity=0.140 Sum_probs=18.0
Q ss_pred CChhHHHHHhccCCCCCchHHHHHHHHHHccCC
Q 007400 102 GSDVDARKVFDKIPVKNLFSYNNMLSGYANLGM 134 (605)
Q Consensus 102 g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~ 134 (605)
...++|..+++.+..++..+|..++.++...+.
T Consensus 50 t~~~kar~Lld~l~~kG~~af~~F~~aL~~~~~ 82 (94)
T 2p1h_A 50 TQQQRAAMLIKMILKKDNDSYVSFYNALLHEGY 82 (94)
T ss_dssp SHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTC
T ss_pred ChHHHHHHHHHHHHHcCHHHHHHHHHHHHHcCH
Confidence 444555555555555555555555555555443
No 334
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=24.58 E-value=3.1e+02 Score=22.90 Aligned_cols=84 Identities=14% Similarity=0.051 Sum_probs=41.4
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCChhh--HHHHHHHhhhcCChhHHHHHHHHHHHhCCCCCchh-hHHHHHHHHHhcCC
Q 007400 27 LISKGQLSEAISSLDLLAQRGIRLPAET--LAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTF-LSNHLISMYFKCGS 103 (605)
Q Consensus 27 ~~~~g~~~~a~~~~~~~~~~g~~~~~~~--~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~ 103 (605)
.++.|+.+.+..+++.+.+.|..++... -...+...+..|+.+ +.+.+++.|..+.... .-...+...+..|+
T Consensus 16 A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~ 91 (241)
T 1k1a_A 16 AVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPS----VVRLLVTAGASPMALDRHGQTAAHLACEHRS 91 (241)
T ss_dssp HHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred HHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHH----HHHHHHHcCCCccccCCCCCCHHHHHHHcCC
Confidence 3456888777777777666665443221 112333334556554 3344455554432210 11123334445666
Q ss_pred hhHHHHHhccC
Q 007400 104 DVDARKVFDKI 114 (605)
Q Consensus 104 ~~~a~~~~~~~ 114 (605)
.+-+..+++..
T Consensus 92 ~~~~~~Ll~~~ 102 (241)
T 1k1a_A 92 PTCLRALLDSA 102 (241)
T ss_dssp HHHHHHHHHHS
T ss_pred HHHHHHHHHcC
Confidence 66666665554
No 335
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=24.04 E-value=2.7e+02 Score=22.46 Aligned_cols=83 Identities=6% Similarity=-0.095 Sum_probs=34.5
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHhhhcCChhHHHHHHHHHHHhCCCCCchh-hHHHHHHHHHhcCCh
Q 007400 26 SLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTF-LSNHLISMYFKCGSD 104 (605)
Q Consensus 26 ~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~ 104 (605)
..+..|+.+....++..-...--..+..-.+.+..+ +..|+.+ +.+.+++.|..++... .-...+...+..|+.
T Consensus 11 ~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A-~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~ 85 (201)
T 3hra_A 11 EAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIA-VHNNDIE----IAKALIDRGADINLQNSISDSPYLYAGAQGRT 85 (201)
T ss_dssp HHHHTTCHHHHHHHHTCTTCCTTCCCTTSCCHHHHH-HHHTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCH
T ss_pred HHHHhccHHHHHHHHHcCCCCCCCCCCCCCCHHHHH-HHcCCHH----HHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCH
Confidence 344567776666655422100001122222333333 3555544 3334444554432210 111223334455666
Q ss_pred hHHHHHhcc
Q 007400 105 VDARKVFDK 113 (605)
Q Consensus 105 ~~a~~~~~~ 113 (605)
+-+..+++.
T Consensus 86 ~~~~~Ll~~ 94 (201)
T 3hra_A 86 EILAYMLKH 94 (201)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhc
Confidence 666555533
No 336
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=23.61 E-value=1.7e+02 Score=19.68 Aligned_cols=60 Identities=7% Similarity=0.006 Sum_probs=37.5
Q ss_pred HHHHCCCCCChHHHHHHHHHHhccc-chHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCC
Q 007400 307 RMMILRIRPNQHTFSSCLCACASIV-SLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGC 367 (605)
Q Consensus 307 ~m~~~g~~p~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 367 (605)
.+.+.|+..+..- ..++..+...+ ..-.+.++++.+.+.+...+..+....+..+...|-
T Consensus 7 ~l~~~g~~~t~~r-~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Gl 67 (83)
T 2fu4_A 7 ALKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGI 67 (83)
T ss_dssp HHHHTTCCCCHHH-HHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTS
T ss_pred HHHHcCCCcCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCC
Confidence 4556777766544 34455555544 456677788877777656666666666666666553
No 337
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=23.22 E-value=1.3e+02 Score=23.45 Aligned_cols=60 Identities=17% Similarity=0.078 Sum_probs=29.6
Q ss_pred HHHhCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCh
Q 007400 175 VLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGEL 236 (605)
Q Consensus 175 ~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 236 (605)
.+++.|++++..-. .++..+...+ .-.|.++++.+.+.++..+..|.-.-+..+...|-+
T Consensus 9 ~L~~~g~r~T~qR~-~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv 68 (145)
T 3eyy_A 9 DLRQRGYRLTPQRQ-LVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELGLV 68 (145)
T ss_dssp HHHTTTCCCCHHHH-HHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTSE
T ss_pred HHHHcCCCcCHHHH-HHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCcE
Confidence 34445555544322 2233333333 445666666666555555555544455556555543
No 338
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=23.16 E-value=3.3e+02 Score=22.81 Aligned_cols=70 Identities=10% Similarity=0.098 Sum_probs=45.5
Q ss_pred CCceeHHHHHHHHHh---cCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCC-----hHHHHHHHHHHHHhCCC
Q 007400 148 RDVVSWNTMIIGYAK---SGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEE-----LKLTRQVHGQVLVTGFL 217 (605)
Q Consensus 148 ~~~~~~~~li~~~~~---~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~-----~~~a~~~~~~~~~~~~~ 217 (605)
++-..+..+|+++.| -.+++.|+-++-+|.+.|-.|.-..-..++-+.-.-|. ...|...++.....|.+
T Consensus 30 k~Gd~HYd~ISAf~KSiRGSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~P 107 (213)
T 3ctd_A 30 KNGQNHFDVISAFIKSIRGSDPDATLYWLANMVEAGEDPNFIFRRLLISACEDIGLADPNAIVVVQSCCDAFDRVGFP 107 (213)
T ss_dssp ----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHHHHHHCTT
T ss_pred CCchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCC
Confidence 344566667777765 47999999999999998877766666666666554443 23455556666666654
No 339
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=23.05 E-value=2.2e+02 Score=22.25 Aligned_cols=59 Identities=2% Similarity=-0.005 Sum_probs=28.1
Q ss_pred HHHCCCCCChHHHHHHHHHHhcccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCC
Q 007400 308 MMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGC 367 (605)
Q Consensus 308 m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 367 (605)
+.+.|++++..-. .++..+...+..-.|.++++.+.+.+...+..|.-..++.+...|-
T Consensus 18 l~~~g~r~T~qR~-~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 76 (150)
T 2xig_A 18 IKKNGLKNSKQRE-EVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENF 76 (150)
T ss_dssp HHHCC--CHHHHH-HHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTS
T ss_pred HHHcCCCCCHHHH-HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCc
Confidence 4445544443322 2333333334455566666666655545555555555555555553
No 340
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=22.76 E-value=2.4e+02 Score=24.78 Aligned_cols=13 Identities=8% Similarity=0.368 Sum_probs=5.4
Q ss_pred hcCChHHHHHHHh
Q 007400 232 KCGELSDARRLFD 244 (605)
Q Consensus 232 ~~g~~~~a~~~~~ 244 (605)
..|+.+-+.-+++
T Consensus 104 ~~g~~~~v~~Ll~ 116 (285)
T 3kea_A 104 DSGNMQTVKLFVK 116 (285)
T ss_dssp HTTCHHHHHHHHH
T ss_pred HcCCHHHHHHHHh
Confidence 3444444443333
No 341
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=22.57 E-value=80 Score=20.15 Aligned_cols=30 Identities=10% Similarity=-0.006 Sum_probs=19.4
Q ss_pred hhHHHHHHHHHHHcCCCCChhhHHHHHHHh
Q 007400 33 LSEAISSLDLLAQRGIRLPAETLAFILQQC 62 (605)
Q Consensus 33 ~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~ 62 (605)
.++|...|.+|++..--++..+|...++.+
T Consensus 2 ~eEae~aF~~lL~~~~V~s~wsweqamr~i 31 (59)
T 2b7e_A 2 AMEAEKEFITMLKENQVDSTWSFSRIISEL 31 (59)
T ss_dssp TTHHHHHHHHHHHHTTCCSSCCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHcCCCCCCcHHHHHHHh
Confidence 356777777765444345566777777777
No 342
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=22.26 E-value=2.5e+02 Score=24.33 Aligned_cols=55 Identities=11% Similarity=0.003 Sum_probs=30.4
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCC-------ChhhHHHHHHHHh--ccCChHHHHHHHHHH
Q 007400 157 IIGYAKSGAVEEGLKFYKVLRRFSISC-------NEFSFAGILTICV--KLEELKLTRQVHGQV 211 (605)
Q Consensus 157 i~~~~~~~~~~~a~~~~~~m~~~~~~p-------~~~~~~~ll~~~~--~~~~~~~a~~~~~~~ 211 (605)
+...++.|+.+.+..+++...+.+... +..-.+.|..++. +.|+.+-+..+++.-
T Consensus 17 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~g 80 (273)
T 2pnn_A 17 IFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVA 80 (273)
T ss_dssp HHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhh
Confidence 334456677777777777766555332 2233444444443 346666665555543
No 343
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=21.97 E-value=2.5e+02 Score=21.44 Aligned_cols=62 Identities=13% Similarity=0.124 Sum_probs=38.5
Q ss_pred HHHhCCCCCChhhHHHHHHHHhccC-ChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChH
Q 007400 175 VLRRFSISCNEFSFAGILTICVKLE-ELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELS 237 (605)
Q Consensus 175 ~m~~~~~~p~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 237 (605)
.+++.|++++..-. .++..+...+ ..-.|.++++.+.+.++..+..|...-+..+...|-+.
T Consensus 8 ~l~~~g~r~T~qR~-~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 70 (136)
T 1mzb_A 8 ELRKAGLKVTLPRV-KILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLVV 70 (136)
T ss_dssp HHHHTTCCCCHHHH-HHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEE
T ss_pred HHHHCCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCcEE
Confidence 35567776665443 3444455555 56678888888887776666666555666666666443
No 344
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=21.62 E-value=2.6e+02 Score=21.83 Aligned_cols=63 Identities=10% Similarity=0.159 Sum_probs=43.0
Q ss_pred HHHHhCCCCCChhhHHHHHHHHhccC-ChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChH
Q 007400 174 KVLRRFSISCNEFSFAGILTICVKLE-ELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELS 237 (605)
Q Consensus 174 ~~m~~~~~~p~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 237 (605)
+.+.+.|++++..-. .++..+...+ ..-.|.++++.+.+.++..+..|...-+..+...|-+.
T Consensus 6 ~~l~~~g~r~T~qR~-~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 69 (150)
T 2w57_A 6 QALKDAGLKVTLPRL-KILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIVT 69 (150)
T ss_dssp HHHHHTTCCCCHHHH-HHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHcCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcEE
Confidence 446677877665543 3455555555 66778889988888877777777666677777777554
No 345
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=21.23 E-value=1.1e+02 Score=23.74 Aligned_cols=44 Identities=16% Similarity=0.268 Sum_probs=19.8
Q ss_pred HHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCh
Q 007400 193 TICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGEL 236 (605)
Q Consensus 193 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 236 (605)
..+...+..-.|.++++.+.+.++..+..|...-+..+...|-+
T Consensus 21 ~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Glv 64 (139)
T 3mwm_A 21 AALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGEV 64 (139)
T ss_dssp HHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSS
T ss_pred HHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCCE
Confidence 33333333444555555554444444444444444455555443
No 346
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=21.21 E-value=2.8e+02 Score=25.79 Aligned_cols=124 Identities=14% Similarity=0.149 Sum_probs=0.0
Q ss_pred HHHHHHHHccCChHHHHHHHhhcCCCC---ceeHHHHHHHHHhcCCh--HHHHHHHHHHHhCCCCCChhhHHHHHHHHhc
Q 007400 123 NNMLSGYANLGMMKHARNLFDNMAERD---VVSWNTMIIGYAKSGAV--EEGLKFYKVLRRFSISCNEFSFAGILTICVK 197 (605)
Q Consensus 123 ~~li~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~~~~--~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 197 (605)
..+|.-|...|++++|.+.++++..|+ ......++......++. +.+..++..+...|+-+.......+...+..
T Consensus 16 ~~ii~EY~~~~D~~Ea~~~l~eL~~p~~~~~~~v~~~i~~aLer~~~~re~~~~LL~~L~~~~~ls~~~~~~Gf~~lle~ 95 (364)
T 3l6a_A 16 ETVVTEYLNSGNANEAVNGVREMRAPKHFLPEMLSKVIILSLDRSDEDKEKASSLISLLKQEGIATSDNFMQAFLNVLDQ 95 (364)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCCGGGHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCCHHHHHHHHHHhCCchhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhh
Q ss_pred cC----ChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhc
Q 007400 198 LE----ELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDET 246 (605)
Q Consensus 198 ~~----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 246 (605)
.. |...|..++..+....+.-+......+...+...+.......++..+
T Consensus 96 l~Dl~iDiP~a~~~la~f~ar~i~~~~l~~~~l~~~l~~G~~~~l~l~vl~~~ 148 (364)
T 3l6a_A 96 CPKLEVDIPLVKSYLAQFAARAIISELVSISELAQPLESGTHFPLFLLCLQQL 148 (364)
T ss_dssp HHHHHHHCTTHHHHHHHHHHHHHHTTSSCHHHHHHHHGGGTTTTHHHHHHHHH
T ss_pred ChHhccccccHHHHHHHHHHHHHHcCCCCHHHHHHHhcccchHHHHHHHHHHH
No 347
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=20.78 E-value=3.9e+02 Score=22.69 Aligned_cols=49 Identities=10% Similarity=0.079 Sum_probs=33.4
Q ss_pred cCChHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 007400 468 AGCSDQLMNQLEKMPY-EHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQ 516 (605)
Q Consensus 468 ~g~~~~A~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 516 (605)
+.+..+....+..-.+ ..-...|...+..+...|++.+|.++|+..++.
T Consensus 130 ~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~ 179 (223)
T 4aez_C 130 IDEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRM 179 (223)
T ss_dssp CSCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 3444444444443332 344667777888888889999999999988886
No 348
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=20.71 E-value=5.3e+02 Score=24.20 Aligned_cols=110 Identities=16% Similarity=0.113 Sum_probs=49.7
Q ss_pred HHHhhhcCChhHHHHHHHHHHHhCCCCCchh-hHHHHHHHHHhcCChhHHHHHhccCCCCCch--HHHHHHHHHHccCCh
Q 007400 59 LQQCAESKSLKLGKRVHLHLKLTQRKTPTTF-LSNHLISMYFKCGSDVDARKVFDKIPVKNLF--SYNNMLSGYANLGMM 135 (605)
Q Consensus 59 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~li~~~~~~~~~ 135 (605)
+...+..|+.+-+..+ ++.|..++... .....+...+..|+.+-+.-+++.-...+.. .-.+.+...+..|..
T Consensus 18 L~~Aa~~g~~~~v~~L----l~~g~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~ 93 (437)
T 1n11_A 18 LHVASFMGHLPIVKNL----LQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHT 93 (437)
T ss_dssp HHHHHHHTCHHHHHHH----HHTTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTSCCHHHHHHHHTCH
T ss_pred HHHHHHCCCHHHHHHH----HHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHCCCH
Confidence 3344456766544444 44444332110 1123344455677777777666654322110 111234444556666
Q ss_pred HHHHHHHhhcCCCC---ceeHHHHHHHHHhcCChHHHHHHH
Q 007400 136 KHARNLFDNMAERD---VVSWNTMIIGYAKSGAVEEGLKFY 173 (605)
Q Consensus 136 ~~A~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~ 173 (605)
+-..-+++.-..++ ...++ .+...+..|+.+.+..++
T Consensus 94 ~~v~~Ll~~ga~~~~~~~~g~t-~L~~A~~~g~~~~v~~Ll 133 (437)
T 1n11_A 94 NMVKLLLENNANPNLATTAGHT-PLHIAAREGHVETVLALL 133 (437)
T ss_dssp HHHHHHHHHTCCTTCCCTTCCC-HHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHhCCCCCCCCCCCCCc-HHHHHHHcCCHHHHHHHH
Confidence 66666665533322 11122 233344556655444444
No 349
>1s6c_A KV4 potassium channel-interacting protein kchip1B; EF-hand, transport protein; 2.00A {Rattus norvegicus} SCOP: a.39.1.5 PDB: 2nz0_A 2i2r_E
Probab=20.64 E-value=3.2e+02 Score=21.63 Aligned_cols=24 Identities=8% Similarity=0.094 Sum_probs=12.2
Q ss_pred hhHHHHHHHHhccCChHHHHHHHH
Q 007400 186 FSFAGILTICVKLEELKLTRQVHG 209 (605)
Q Consensus 186 ~~~~~ll~~~~~~~~~~~a~~~~~ 209 (605)
.+|.-++..+.+...+-.....++
T Consensus 157 i~~~Ef~~~~~~~~~~~~~l~~~d 180 (183)
T 1s6c_A 157 VTLDEFLESXQEDDNIMRSLQLFQ 180 (183)
T ss_dssp ECHHHHHHHTTSCCHHHHHHHHHH
T ss_pred EeHHHHHHHHhcChHHHHHHHHhh
Confidence 455555555555544444444444
No 350
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=20.63 E-value=3.7e+02 Score=22.37 Aligned_cols=28 Identities=4% Similarity=0.000 Sum_probs=15.8
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCC
Q 007400 157 IIGYAKSGAVEEGLKFYKVLRRFSISCN 184 (605)
Q Consensus 157 i~~~~~~~~~~~a~~~~~~m~~~~~~p~ 184 (605)
+...+..|+.+.+..+++.+.+.|..++
T Consensus 13 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~ 40 (241)
T 1k1a_A 13 LHIAVVQGNLPAVHRLVNLFQQGGRELD 40 (241)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTTCCSC
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCC
Confidence 3444556666666666665555554443
No 351
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=20.11 E-value=2e+02 Score=21.52 Aligned_cols=44 Identities=14% Similarity=0.112 Sum_probs=26.9
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHHhhhcCChhHHHHHHHHHHHh
Q 007400 38 SSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLT 81 (605)
Q Consensus 38 ~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 81 (605)
-+|+.+.+..+.|+...-..-+..+...+++..|.+++-.+...
T Consensus 47 ~LfdkLn~~~Ls~~v~~~L~~l~~al~~~dy~~A~~ih~~l~t~ 90 (118)
T 2yru_A 47 LLREQWAGGKLSIPVKKRMALLVQELLHHQWDAADDIHRSLMVD 90 (118)
T ss_dssp HHHHHHHHTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHS
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Confidence 34555555555444333333333445789999999998888754
No 352
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=20.04 E-value=1.9e+02 Score=21.92 Aligned_cols=37 Identities=27% Similarity=0.193 Sum_probs=21.0
Q ss_pred cCChhHHHHHHHHHHHcCCCCChhhHHHHHHHhhhcC
Q 007400 30 KGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESK 66 (605)
Q Consensus 30 ~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~ 66 (605)
.+.+-.|.++++.+.+.+...+..|....|+.+...|
T Consensus 23 ~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 59 (131)
T 2o03_A 23 LDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSG 59 (131)
T ss_dssp CCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTT
T ss_pred CCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 3445566666666665554455555555555555544
Done!