BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 007401
(605 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2DC0|A Chain A, Crystal Structure Of Amidase
pdb|2DC0|B Chain B, Crystal Structure Of Amidase
Length = 434
Score = 108 bits (269), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 105/388 (27%), Positives = 159/388 (40%), Gaps = 33/388 (8%)
Query: 73 LAGLKFAIKDVFDVKGYVTGFGSPDWKRDHHEAERTAVVVTLLLKNGATCIGKTVLDEFA 132
L GL +KD+F VKG T G+ K A V L + GA KT E A
Sbjct: 65 LHGLPLTVKDLFPVKGMPTRAGT---KAPLPPLPEEARAVRRLREAGALLFAKTNXHEIA 121
Query: 133 FGITGENKHYGTPVNPQMPSHIPXXXXXXXXXXXXXQLVDFALGTDTIGCVRVPASFCGI 192
GITGEN G N PS + +LGTDT G +R+PA F G+
Sbjct: 122 LGITGENPWTGPVRNAVDPSRQAGGSSGGSAVAVALGIGLASLGTDTGGSIRIPAGFNGV 181
Query: 193 LGYRPSHGTVSMIGVLPNSQSLDTVGLLARNASILHRVGHVLLQLNAVEPRRARRLIFAD 252
+G++PS+G VS+ G LP S+S D G L R+ R H L + I A
Sbjct: 182 VGFKPSYGRVSLEGALPLSRSTDHAGPLTRSV----RDAHFLTE------------ILAG 225
Query: 253 DIFQLSKVPKLKTIHVISKAIESLSGYQNPEHMNVGQYIASNVPSLKGLRAQSTSPENGT 312
+ L V V ++ L G E + ++P+L+ + + P
Sbjct: 226 ESIPLEGVQN----PVFGVPLDFLEGRLGVEVRKAFTRLLEDLPALRAEVREVSLP---- 277
Query: 313 ATLKALSSVMLSLQRYEFKTIYEEWVKSAKPRLGYNVFERVLEAINTTQDNIKILYKVRN 372
L+ + V L RYE I+E+ +K V E +L + T+ + + R
Sbjct: 278 --LEGVYEVYTRLVRYEAARIHEKALKEHPEGFSPQVREALLAGLALTEKDYRDAVAERE 335
Query: 373 EMRAALQRLLKDDKILVIPT--VSDPPLKLNTKKTYSAEFHDRT--LVLSSIGSMSGCCQ 428
+R L + L+ L++P + PPL + S R + L+ S+ G
Sbjct: 336 ALRLELVKALRGVDALLLPVQPLPAPPLGTEEVELESGRKGHREAFITLTLPFSLLGVPT 395
Query: 429 VAIPIGKYNEHPISISFITYHGGDKFLL 456
+A+P K P+ + + +G D +L
Sbjct: 396 LALPFAKVEGXPVGLQVVGAYGEDGKVL 423
>pdb|3H0L|A Chain A, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0L|D Chain D, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0L|G Chain G, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0L|J Chain J, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0L|M Chain M, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0L|P Chain P, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0L|S Chain S, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0L|V Chain V, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|A Chain A, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|D Chain D, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|G Chain G, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|J Chain J, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|M Chain M, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|P Chain P, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|S Chain S, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|V Chain V, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|A Chain A, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|D Chain D, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|G Chain G, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|J Chain J, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|M Chain M, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|P Chain P, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|S Chain S, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|V Chain V, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
Length = 478
Score = 92.8 bits (229), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 91/410 (22%), Positives = 165/410 (40%), Gaps = 40/410 (9%)
Query: 73 LAGLKFAIKDVFDVKGYVTGFGSPDWKRDHHEAERTAVVVTLLLKNGATCIGKTVLDEFA 132
L G+ A+KD V+G T S ++ A A V+ L K GA +GKT LDEFA
Sbjct: 64 LFGIPIAVKDNILVEGEKTTCASK--ILENFVAPYDATVIERLKKAGALIVGKTNLDEFA 121
Query: 133 FGITGENKHYGTPVNPQMPSHIPXXXXXXXXXXXXXQLVDFALGTDTIGCVRVPASFCGI 192
G + E + NP +P +LG+DT G +R PASFCG+
Sbjct: 122 MGSSTEYSAFFPTKNPWDLERVPGGSSGGSAASVAVLSAPVSLGSDTGGSIRQPASFCGV 181
Query: 193 LGYRPSHGTVSMIGVLPNSQSLDTVGLLARNASILHRVGHVLLQLNAVEPRRAR------ 246
+G +P++G VS G++ + SLD +G+ R + V V+ + + A+
Sbjct: 182 IGIKPTYGRVSRYGLVAFASSLDQIGVFGRRTEDVALVLEVISGWDEKDSTSAKVPVPEW 241
Query: 247 -----------RLIFADDIFQLSKVPKLKTIHVISKAIESLSGYQNPEHMNVGQ----YI 291
++ + F+ P++K +A E+ E + + ++
Sbjct: 242 SEEVKKEVKGLKIGLPKEFFEYELQPQVK------EAFENFIKELEKEGFEIKEVSLPHV 295
Query: 292 ASNVPSLKGLRAQSTSPENGTATLKALSSVMLSLQRYEFKTIYEEWVKSAKPRLGYNVFE 351
++P+ + +P ++ L V + E+K I+E + ++ G V
Sbjct: 296 KYSIPTYYII-----APSEASSNLARYDGVRYGYRAKEYKDIFEMYARTRDEGFGPEVKR 350
Query: 352 RVLEAINTTQDNIKILY-----KVRNEMRAALQRLLKDDKILVIPTVSDPPLKLNTKKTY 406
R++ Y KVR + + ++ ++ PT P K +
Sbjct: 351 RIMLGTFALSAGYYDAYYLKAQKVRRLITNDFLKAFEEVDVIASPTTPTLPFKFGERLEN 410
Query: 407 SAEFHDRTLVLSSIGSMSGCCQVAIPIGKYNEHPISISFITYHGGDKFLL 456
E + + +L+ +++G ++IPI + P+ I H + LL
Sbjct: 411 PIEMY-LSDILTVPANLAGLPAISIPIAWKDGLPVGGQLIGKHWDETTLL 459
>pdb|3KFU|E Chain E, Crystal Structure Of The Transamidosome
pdb|3KFU|H Chain H, Crystal Structure Of The Transamidosome
Length = 471
Score = 92.4 bits (228), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 110/422 (26%), Positives = 170/422 (40%), Gaps = 61/422 (14%)
Query: 73 LAGLKFAIKDVFDVKGYVTGFGSPDWKRDHHEAERTAVVVTLLLKNGATCIGKTVLDEFA 132
LAGL A+KD +G T GS + E TAV L GA +GKT LDEF
Sbjct: 58 LAGLVVAVKDNIATRGLRTTAGSRLLENFVPPYEATAVARLKAL--GALVLGKTNLDEFG 115
Query: 133 FGITGENKHYGTPVNPQMPSHIPXXXXXXXXXXXXXQLVDFALGTDTIGCVRVPASFCGI 192
G + E+ + NP P +P L ALG+DT G VR PA+FCG+
Sbjct: 116 MGSSTEHSAFFPTKNPFDPDRVPGGSSGGSAAALAADLAPLALGSDTGGSVRQPAAFCGV 175
Query: 193 LGYRPSHGTVSMIGVLPNSQSLDTVGLLARNASILHRVGHVLLQLNAVEPRRARRLIFAD 252
G +P++G VS G++ + SLD +G +AR+ L LL A P
Sbjct: 176 YGLKPTYGRVSRFGLIAYASSLDQIGPMARSVRDL-----ALLMDAAAGPDPL------- 223
Query: 253 DIFQLSKVPKLKTIHVISKAIESLSGYQNPEHMN-VGQYIASNVPSLK------------ 299
D L P+ + E+L G P + V + +A N P ++
Sbjct: 224 DATSLDLPPRFQ---------EALEGPLPPLRLGVVREALAGNSPGVERALEEALKVFRE 274
Query: 300 -GLRAQSTSPENGTATLKAL-----SSVMLSLQRYEFKTIY---------EEWVKSAKPR 344
GL + S + L A + +L RY+ T+Y E +++ +
Sbjct: 275 LGLSVREVSWPSLPQALAAYYILAPAEASSNLARYD-GTLYGRRAAGEEVEGMMEATRAL 333
Query: 345 LGYNVFERVLEAINTTQDNIKILY-----KVRNEMRAALQRLLKDDKILVIPTVSDPPLK 399
G V RVL Y R ++A Q L ++ +L++PT P
Sbjct: 334 FGLEVKRRVLVGTFVLSSGYYEAYYGRAQAFRRRLKAEAQALFREVDLLLLPTTPHPAFP 393
Query: 400 LNTKKTYSAEFHDRTLVLSSIGS-MSGCCQVAIPIGKYNEHPISISFITYHGGDKFLLDT 458
++ A + + L ++G+ ++G ++ P G P+ + + G D+ LL
Sbjct: 394 FGARRDPLAMYRED---LYTVGANLTGLPALSFPAGFEGHLPVGLQLLAPWGEDERLLRA 450
Query: 459 VL 460
L
Sbjct: 451 AL 452
>pdb|1WAO|1 Chain 1, Pp5 Structure
pdb|1WAO|2 Chain 2, Pp5 Structure
pdb|1WAO|3 Chain 3, Pp5 Structure
pdb|1WAO|4 Chain 4, Pp5 Structure
Length = 477
Score = 91.7 bits (226), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 44/121 (36%), Positives = 73/121 (60%)
Query: 484 GSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAE 543
G++ +E LK + N FK K + A+ +YS+AI+LN ++A YY NR+ AYL C+ A
Sbjct: 1 GALKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYAL 60
Query: 544 EDCSKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAANLAEKRLRKL 603
D ++ I LDKK +K Y RR + AL + AL+D++ + ++P +K A + + K+
Sbjct: 61 GDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKI 120
Query: 604 I 604
+
Sbjct: 121 V 121
>pdb|2BUG|A Chain A, Solution Structure Of The Tpr Domain From Protein
Phosphatase 5 In Complex With Hsp90 Derived Peptide
Length = 140
Score = 91.3 bits (225), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 45/125 (36%), Positives = 75/125 (60%)
Query: 480 PDTNGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCF 539
P +G++ +E LK + N FK K + A+ +YS+AI+LN ++A YY NR+ AYL C+
Sbjct: 12 PPADGALKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECY 71
Query: 540 QQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAANLAEKR 599
A D ++ I LDKK +K Y RR + AL + AL+D++ + ++P +K A + +
Sbjct: 72 GYALNDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQE 131
Query: 600 LRKLI 604
K++
Sbjct: 132 CNKIV 136
>pdb|1A17|A Chain A, Tetratricopeptide Repeats Of Protein Phosphatase 5
Length = 166
Score = 91.3 bits (225), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 45/125 (36%), Positives = 75/125 (60%)
Query: 480 PDTNGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCF 539
P +G++ +E LK + N FK K + A+ +YS+AI+LN ++A YY NR+ AYL C+
Sbjct: 4 PPADGALKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECY 63
Query: 540 QQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAANLAEKR 599
A D ++ I LDKK +K Y RR + AL + AL+D++ + ++P +K A + +
Sbjct: 64 GYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQE 123
Query: 600 LRKLI 604
K++
Sbjct: 124 CNKIV 128
>pdb|4GYR|A Chain A, Granulibacter Bethesdensis Allophanate Hydrolase Apo
pdb|4GYR|B Chain B, Granulibacter Bethesdensis Allophanate Hydrolase Apo
pdb|4GYS|A Chain A, Granulibacter Bethesdensis Allophanate Hydrolase
Co-crystallized With Malonate
pdb|4GYS|B Chain B, Granulibacter Bethesdensis Allophanate Hydrolase
Co-crystallized With Malonate
Length = 621
Score = 87.4 bits (215), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 56/153 (36%), Positives = 78/153 (50%), Gaps = 3/153 (1%)
Query: 73 LAGLKFAIKDVFDVKGYVTGFGSPDWKRDHHEAERTAVVVTLLLKNGATCIGKTVLDEFA 132
L G+ FA+KD DV G P + +E +R A VV L GA +GKT LD+FA
Sbjct: 95 LYGVPFAVKDNIDVAGLPCSAACPAFT---YEPDRDATVVARLRAAGAIVLGKTNLDQFA 151
Query: 133 FGITGENKHYGTPVNPQMPSHIPXXXXXXXXXXXXXQLVDFALGTDTIGCVRVPASFCGI 192
G+ G +G P +I LV F+LGTDT G RVPA+F +
Sbjct: 152 TGLVGTRSPFGAPRCVFDQDYISGGSSSGSAVAVAAGLVAFSLGTDTAGSGRVPAAFNNL 211
Query: 193 LGYRPSHGTVSMIGVLPNSQSLDTVGLLARNAS 225
+G +P+ G +S GV+P +SLD V + A + +
Sbjct: 212 VGVKPTKGLLSTSGVVPACRSLDCVTVFAASVA 244
>pdb|3AL0|A Chain A, Crystal Structure Of The Glutamine Transamidosome From
Thermotoga Maritima In The Glutamylation State
Length = 475
Score = 85.1 bits (209), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 100/428 (23%), Positives = 179/428 (41%), Gaps = 30/428 (7%)
Query: 75 GLKFAIKDVFDVKGYVTGFGSPDWKRDHHEAERTAVVVTLLLKNGATCIGKTVLDEFAFG 134
G+ AIKD G T S +++E+ A VV + + G +GK LDEFA G
Sbjct: 60 GIPVAIKDNILTLGMRTTCASRIL--ENYESVFDATVVKKMKEAGFVVVGKANLDEFAMG 117
Query: 135 ITGENKHYGTPVNPQMPSHIPXXXXXXXXXXXXXQLVDFALGTDTIGCVRVPASFCGILG 194
+ E + NP +P +V ALG+DT G VR PAS CG++G
Sbjct: 118 SSTERSAFFPTRNPWDLERVPGGSSGGSAAAVSAGMVVAALGSDTGGSVRQPASLCGVVG 177
Query: 195 YRPSHGTVSMIGVLPNSQSLDTVGLL---ARNASILHRVGHVLLQLNAVEPRRARRLIFA 251
Y+P++G VS G++ + SLD +G + R+A+IL + + +A R++ F
Sbjct: 178 YKPTYGLVSRYGLVAFASSLDQIGPITKTVRDAAILMEIISGRDENDATTVN--RKVDFL 235
Query: 252 DDIFQ-LSKVPKLKTIHVISKAIESLSGYQNPEHMNVGQYIASNVPSLKGLRAQST---- 306
+I + +S + + IE + E + + + + + V +K + +
Sbjct: 236 SEIEEGVSGMKFAVPEEIYEHDIEEGVSERFEEALKLLERLGAKVERVKIPHIKYSVATY 295
Query: 307 ---SPENGTATLKALSSVMLSLQRYEFKTIYEEWVKSAKPRLGYNVFERVLEAINTTQDN 363
+P ++ L V L R + K + E ++K+ G V R++ T
Sbjct: 296 YVIAPAEASSNLARFDGVKYGL-RIKEKGLREMYMKTRNVGFGEEVRRRIMIGTFTLSAA 354
Query: 364 IKILY-----KVRNEMRAALQRLLKDDKILVIPTVSDPPLKL-NTKKTYSAEFHDRTLVL 417
Y KVR ++ L +L ++ PT K+ K + D +
Sbjct: 355 YYEAYFNKAMKVRRKISDELNEVLSQYDAILTPTSPVTAFKIGEIKDPLTYYLMD---IF 411
Query: 418 SSIGSMSGCCQVAIPIGKYNEHPISISFITYHGGDKFLLDTVLDLYDSLQEQVNIASN-L 476
+ +++G +++P G N P+ + I G +F V + ++++ N +
Sbjct: 412 TIPANLAGLPAISVPFGFSNNLPVGVQVI----GRRFADGKVFRIARAIEKNSPYNENGM 467
Query: 477 VPLPDTNG 484
PLP+
Sbjct: 468 FPLPEVKA 475
>pdb|2DF4|A Chain A, Structure Of Trna-Dependent Amidotransferase Gatcab
Complexed With Mn2+
pdb|2DQN|A Chain A, Structure Of Trna-Dependent Amidotransferase Gatcab
Complexed With Asn
pdb|2G5H|A Chain A, Structure Of Trna-Dependent Amidotransferase Gatcab
pdb|2G5I|A Chain A, Structure Of Trna-dependent Amidotransferase Gatcab
Complexed With Adp-alf4
pdb|3IP4|A Chain A, The High Resolution Structure Of Gatcab
pdb|2F2A|A Chain A, Structure Of Trna-Dependent Amidotransferase Gatcab
Complexed With Gln
Length = 485
Score = 84.7 bits (208), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 85/370 (22%), Positives = 149/370 (40%), Gaps = 50/370 (13%)
Query: 109 AVVVTLLLKNGATCIGKTVLDEFAFGITGENKHYGTPVNPQMPSHIPXXXXXXXXXXXXX 168
+ V+ L K A IGK +DEFA G + E ++ VNP +P
Sbjct: 105 STVMEKLHKENAVLIGKLNMDEFAMGGSTETSYFKKTVNPFDHKAVPGGSSGGSAAAVAA 164
Query: 169 QLVDFALGTDTIGCVRVPASFCGILGYRPSHGTVSMIGVLPNSQSLDTVGLLAR----NA 224
LV +LG+DT G +R PA++CG++G +P++G VS G++ + SLD +G L R NA
Sbjct: 165 GLVPLSLGSDTGGSIRQPAAYCGVVGMKPTYGRVSRFGLVAFASSLDQIGPLTRNVKDNA 224
Query: 225 SILHRVGHVLLQLNAVEPRRARRLIFADDIFQLSKVPKLKTIHVISKAIESLSGYQNPEH 284
+L + + + P DD+ S+ I K I+ L E+
Sbjct: 225 IVLEAISGADVNDSTSAP--------VDDVDFTSE---------IGKDIKGLKVALPKEY 267
Query: 285 M------NVGQYIASNVPSLKGLRA--QSTSPEN---------------GTATLKALSSV 321
+ +V + + + V +LK L A + S N ++ L +
Sbjct: 268 LGEGVADDVKEAVQNAVETLKSLGAVVEEVSLPNTKFGIPSYYVIASSEASSNLSRFDGI 327
Query: 322 MLSLQRYEFKTIYEEWVKSAKPRLGYNVFERVLEAINTTQDNIKILY-----KVRNEMRA 376
E ++ E + S G V R+ Y KVR ++
Sbjct: 328 RYGYHSKEAHSLEELYKMSRSEGFGKEVKRRIFLGTFALSSGYYDAYYKKSQKVRTLIKN 387
Query: 377 ALQRLLKDDKILVIPTVSDPPLKLNTKKTYSAEFHDRTLVLSSIGSMSGCCQVAIPIGKY 436
++ ++ ++V PT L + + L+ + + +++G +++P G+
Sbjct: 388 DFDKVFENYDVVVGPTAPTTAFNLGEEIDDPLTMYANDLLTTPV-NLAGLPGISVPCGQS 446
Query: 437 NEHPISISFI 446
N PI + FI
Sbjct: 447 NGRPIGLQFI 456
>pdb|2VYI|A Chain A, Crystal Structure Of The Tpr Domain Of Human Sgt
pdb|2VYI|B Chain B, Crystal Structure Of The Tpr Domain Of Human Sgt
Length = 131
Score = 77.8 bits (190), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 52/129 (40%), Positives = 77/129 (59%), Gaps = 5/129 (3%)
Query: 478 PLPDTNGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELG 537
PL S +A E LK +GN K + + AV++Y +AI+LN +A Y+ NRAAAY +LG
Sbjct: 2 PLGSEEDSAEA-ERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLG 60
Query: 538 CFQQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKA--ANL 595
+ A +DC + I +D KAY R G A +L + EA+ +K A+ L+P N+ +NL
Sbjct: 61 NYAGAVQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNL 120
Query: 596 --AEKRLRK 602
AE +LR+
Sbjct: 121 KIAELKLRE 129
>pdb|2LNI|A Chain A, Solution Nmr Structure Of Stress-Induced-Phosphoprotein 1
Sti1 From Homo Sapiens, Northeast Structural Genomics
Consortium Target Hr4403e
Length = 133
Score = 77.8 bits (190), Expect = 2e-14, Method: Composition-based stats.
Identities = 41/107 (38%), Positives = 63/107 (58%)
Query: 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDC 546
D + ++K KGN F+ + +A+ +Y+EAIK N A YSNRAA Y +L FQ A +DC
Sbjct: 14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDC 73
Query: 547 SKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAA 593
+ I L+ +K Y R+ A EA+ Y +A+ ++ A+ L+ K A
Sbjct: 74 EECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEA 120
>pdb|2GI3|A Chain A, Crystal Structure Of Glutamyl-Trna(Gln) Amidotransferase
Subunit A (Tm1272) From Thermotoga Maritima At 1.80 A
Resolution
Length = 476
Score = 77.0 bits (188), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 100/425 (23%), Positives = 172/425 (40%), Gaps = 28/425 (6%)
Query: 75 GLKFAIKDVFDVKGYVTGFGSPDWKRDHHEAERTAVVVTLLLKNGATCIGKTVLDEFAFG 134
G+ AIKD G T S +++E+ A VV + G +GK LDEFA G
Sbjct: 61 GIPVAIKDNILTLGXRTTCASRIL--ENYESVFDATVVKKXKEAGFVVVGKANLDEFAXG 118
Query: 135 ITGENKHYGTPVNPQMPSHIPXXXXXXXXXXXXXQLVDFALGTDTIGCVRVPASFCGILG 194
+ E + NP +P V ALG+DT G VR PAS CG++G
Sbjct: 119 SSTERSAFFPTRNPWDLERVPGGSSGGSAAAVSAGXVVAALGSDTGGSVRQPASLCGVVG 178
Query: 195 YRPSHGTVSMIGVLPNSQSLDTVGLL---ARNASILHRVGHVLLQLNAVEPRRARRLIFA 251
Y+P++G VS G++ + SLD +G + R+A+IL + + +A R++ F
Sbjct: 179 YKPTYGLVSRYGLVAFASSLDQIGPITKTVRDAAILXEIISGRDENDATTVN--RKVDFL 236
Query: 252 DDIFQLSKVPKLKTIHVISK-AIESLSGYQNPEHMNVGQYIASNVPSLKGLRAQST---- 306
+I + K I + IE + E + + + + + V +K + +
Sbjct: 237 SEIEEGVSGXKFAVPEEIYEHDIEEGVSERFEEALKLLERLGAKVERVKIPHIKYSVATY 296
Query: 307 ---SPENGTATLKALSSVMLSLQRYEFKTIYEEWVKSAKPRLGYNVFERVLEAINTTQDN 363
+P ++ L V L R + K + E + K+ G V R+ T
Sbjct: 297 YVIAPAEASSNLARFDGVKYGL-RIKEKGLREXYXKTRNVGFGEEVRRRIXIGTFTLSAA 355
Query: 364 IKILY-----KVRNEMRAALQRLLKDDKILVIPTVSDPPLKLNTKKTYSAEFHDRTLVLS 418
Y KVR ++ L +L ++ PT K+ K + +
Sbjct: 356 YYEAYFNKAXKVRRKISDELNEVLSQYDAILTPTSPVTAFKIGEIKDPLTYYLXDIFTIP 415
Query: 419 SIGSMSGCCQVAIPIGKYNEHPISISFITYHGGDKFLLDTVLDLYDSLQEQVNIASN-LV 477
+ +++G +++P G N P+ + I G +F V + ++++ N
Sbjct: 416 A--NLAGLPAISVPFGFSNNLPVGVQVI----GRRFADGKVFRIARAIEKNSPYNENGXF 469
Query: 478 PLPDT 482
PLP+
Sbjct: 470 PLPEV 474
>pdb|3A1I|A Chain A, Crystal Structure Of Rhodococcus Sp. N-771 Amidase
Complexed With Benzamide
Length = 521
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 54/180 (30%), Positives = 79/180 (43%), Gaps = 2/180 (1%)
Query: 73 LAGLKFAIKDVFDVKGYVTGFGSPDWKRDHHEAERTAVVVTLLLKNGATCIGKTVLDEFA 132
L G + AIKD V G GS + R A VVT LL GAT GK V ++
Sbjct: 88 LTGRRVAIKDNVTVAGVPMMNGS--RTVEGFTPSRDATVVTRLLAAGATVAGKAVCEDLC 145
Query: 133 FGITGENKHYGTPVNPQMPSHIPXXXXXXXXXXXXXQLVDFALGTDTIGCVRVPASFCGI 192
F + G NP VDFA+G D G +R+PA+FCG+
Sbjct: 146 FSGSSFTPASGPVRNPWDRQREAGGSSGGSAALVANGDVDFAIGGDQGGAIRIPAAFCGV 205
Query: 193 LGYRPSHGTVSMIGVLPNSQSLDTVGLLARNASILHRVGHVLLQLNAVEPRRARRLIFAD 252
+G++P+ G V G P +++D +G + R + V+ + +PR+A + D
Sbjct: 206 VGHKPTFGLVPYTGAFPIERTIDHLGPITRTVHDAALMLSVIAGRDGNDPRQADSVEAGD 265
>pdb|3A1K|A Chain A, Crystal Structure Of Rhodococcus Sp. N771 Amidase
Length = 521
Score = 74.7 bits (182), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 54/180 (30%), Positives = 79/180 (43%), Gaps = 2/180 (1%)
Query: 73 LAGLKFAIKDVFDVKGYVTGFGSPDWKRDHHEAERTAVVVTLLLKNGATCIGKTVLDEFA 132
L G + AIKD V G GS + R A VVT LL GAT GK V ++
Sbjct: 88 LTGRRVAIKDNVTVAGVPMMNGS--RTVEGFTPSRDATVVTRLLAAGATVAGKAVCEDLC 145
Query: 133 FGITGENKHYGTPVNPQMPSHIPXXXXXXXXXXXXXQLVDFALGTDTIGCVRVPASFCGI 192
F + G NP VDFA+G D G +R+PA+FCG+
Sbjct: 146 FSGSSFTPASGPVRNPWDRQREAGGSSGGSAALVANGDVDFAIGGDQGGSIRIPAAFCGV 205
Query: 193 LGYRPSHGTVSMIGVLPNSQSLDTVGLLARNASILHRVGHVLLQLNAVEPRRARRLIFAD 252
+G++P+ G V G P +++D +G + R + V+ + +PR+A + D
Sbjct: 206 VGHKPTFGLVPYTGAFPIERTIDHLGPITRTVHDAALMLSVIAGRDGNDPRQADSVEAGD 265
>pdb|3KD7|A Chain A, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|B Chain B, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|C Chain C, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|D Chain D, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|E Chain E, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
Length = 125
Score = 73.9 bits (180), Expect = 2e-13, Method: Composition-based stats.
Identities = 38/107 (35%), Positives = 63/107 (58%)
Query: 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDC 546
+++E K GNA +K + KA+ YY +A++L+ +A+ + N AY + G +Q+A E
Sbjct: 7 NSAEAWKNLGNAYYKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAIEYY 66
Query: 547 SKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAA 593
K + LD N KA+ RRG A Y +A++D++ A+ L+P N A
Sbjct: 67 QKALELDPNNAKAWYRRGNAYYKQGDYQKAIEDYQKALELDPNNAKA 113
Score = 54.3 bits (129), Expect = 2e-07, Method: Composition-based stats.
Identities = 27/73 (36%), Positives = 42/73 (57%)
Query: 496 GNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKK 555
GNA +K + KA+ YY +A++L+ +A + R AY + G +Q+A ED K + LD
Sbjct: 50 GNAYYKQGDYQKAIEYYQKALELDPNNAKAWYRRGNAYYKQGDYQKAIEDYQKALELDPN 109
Query: 556 NVKAYLRRGTARE 568
N KA G A++
Sbjct: 110 NAKAKQNLGNAKQ 122
>pdb|4GCO|A Chain A, Central Domain Of Stress-Induced Protein-1 (Sti-1) From
C.Elegans
Length = 126
Score = 72.8 bits (177), Expect = 5e-13, Method: Composition-based stats.
Identities = 37/101 (36%), Positives = 61/101 (60%)
Query: 493 KEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISL 552
K KGN FK + A+ +Y+EA+K + +A YSNRAA +L FQ+A +DC I L
Sbjct: 17 KNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRL 76
Query: 553 DKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAA 593
D K +K Y+R+ A+ +++A + ++ A+ ++P N+ A
Sbjct: 77 DSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEA 117
>pdb|1OBL|A Chain A, Crystal Structure Of The S133a Mutant Of Malonamidase E2
Complexed With Malonate From Bradyrhizobium Japonicum
pdb|1OBL|B Chain B, Crystal Structure Of The S133a Mutant Of Malonamidase E2
Complexed With Malonate From Bradyrhizobium Japonicum
Length = 414
Score = 72.4 bits (176), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 51/157 (32%), Positives = 69/157 (43%), Gaps = 8/157 (5%)
Query: 73 LAGLKFAIKDVFDVKGYVTGFGSPDWKRDHHEAERTAVVVTLLLKNGATCIGKTVLDEFA 132
L G+ IKD+ D T GS ++ + A VV +L + GAT IGKT FA
Sbjct: 54 LRGIAVGIKDIIDTANMPTEMGSEIYR--GWQPRSDAPVVMMLKRAGATIIGKTTTTAFA 111
Query: 133 FGITGENKHYGTPVNPQMPSHIPXXXXXXXXXXXXXQLVDFALGTDTIGCVRVPASFCGI 192
++ +NP H P ++ ALGT T G V PA++CG
Sbjct: 112 ------SRDPTATLNPHNTGHSPGGSSAGSAAAVGAGMIPLALGTQTGGSVIRPAAYCGT 165
Query: 193 LGYRPSHGTVSMIGVLPNSQSLDTVGLLARNASILHR 229
+PS + +GV S +LDTVGL A L R
Sbjct: 166 AAIKPSFRMLPTVGVKCYSWALDTVGLFGARAEDLAR 202
>pdb|1O9O|A Chain A, Crystal Structure Of The S131a Mutant Of Malonamidase E2
Complexed With Malonamate From Bradyrhizobium Japonicum
pdb|1O9O|B Chain B, Crystal Structure Of The S131a Mutant Of Malonamidase E2
Complexed With Malonamate From Bradyrhizobium Japonicum
pdb|1O9P|A Chain A, Crystal Structure Of The S131a Mutant Of Malonamidase E2
Complexed With Malonate From Bradyrhizobium Japonicum
pdb|1O9P|B Chain B, Crystal Structure Of The S131a Mutant Of Malonamidase E2
Complexed With Malonate From Bradyrhizobium Japonicum
Length = 414
Score = 72.4 bits (176), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 51/157 (32%), Positives = 69/157 (43%), Gaps = 8/157 (5%)
Query: 73 LAGLKFAIKDVFDVKGYVTGFGSPDWKRDHHEAERTAVVVTLLLKNGATCIGKTVLDEFA 132
L G+ IKD+ D T GS ++ + A VV +L + GAT IGKT FA
Sbjct: 54 LRGIAVGIKDIIDTANMPTEMGSEIYR--GWQPRSDAPVVMMLKRAGATIIGKTTTTAFA 111
Query: 133 FGITGENKHYGTPVNPQMPSHIPXXXXXXXXXXXXXQLVDFALGTDTIGCVRVPASFCGI 192
++ +NP H P ++ ALGT T G V PA++CG
Sbjct: 112 ------SRDPTATLNPHNTGHSPGGASSGSAAAVGAGMIPLALGTQTGGSVIRPAAYCGT 165
Query: 193 LGYRPSHGTVSMIGVLPNSQSLDTVGLLARNASILHR 229
+PS + +GV S +LDTVGL A L R
Sbjct: 166 AAIKPSFRMLPTVGVKCYSWALDTVGLFGARAEDLAR 202
>pdb|2DBA|A Chain A, The Solution Structure Of The Tetratrico Peptide Repeat Of
Human Smooth Muscle Cell Associated Protein-1, Isoform 2
Length = 148
Score = 69.7 bits (169), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 44/117 (37%), Positives = 65/117 (55%), Gaps = 4/117 (3%)
Query: 478 PLPDTNGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGT---SATYYSNRAAAYL 534
P P T G+ +L KE GN FK + A+ Y++A+ L+ T A + NRAA +L
Sbjct: 18 PRPATPGASSVEQLRKE-GNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHL 76
Query: 535 ELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNK 591
+L + +AE + SK I D +VKA RR A E L ++A+ D + + LEP+NK
Sbjct: 77 KLEDYDKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNK 133
>pdb|1OBK|A Chain A, Crystal Structure Of The R158q Mutant Of Malonamidase E2
From Bradyrhizobium Japonicum
pdb|1OBK|B Chain B, Crystal Structure Of The R158q Mutant Of Malonamidase E2
From Bradyrhizobium Japonicum
Length = 414
Score = 68.9 bits (167), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 51/157 (32%), Positives = 69/157 (43%), Gaps = 8/157 (5%)
Query: 73 LAGLKFAIKDVFDVKGYVTGFGSPDWKRDHHEAERTAVVVTLLLKNGATCIGKTVLDEFA 132
L G+ IKD+ D T GS ++ + A VV +L + GAT IGKT FA
Sbjct: 54 LRGIAVGIKDIIDTANMPTEMGSEIYR--GWQPRSDAPVVMMLKRAGATIIGKTTTTAFA 111
Query: 133 FGITGENKHYGTPVNPQMPSHIPXXXXXXXXXXXXXQLVDFALGTDTIGCVRVPASFCGI 192
++ +NP H P ++ ALGT T G V PA++CG
Sbjct: 112 ------SRDPTATLNPHNTGHSPGGSSSGSAAAVGAGMIPLALGTQTGGSVIQPAAYCGT 165
Query: 193 LGYRPSHGTVSMIGVLPNSQSLDTVGLLARNASILHR 229
+PS + +GV S +LDTVGL A L R
Sbjct: 166 AAIKPSFRMLPTVGVKCYSWALDTVGLFGARAEDLAR 202
>pdb|1OCK|A Chain A, The Crystal Structure Of Malonamidase E2 From
Bradyrhizobium Japonicum
pdb|1OCK|B Chain B, The Crystal Structure Of Malonamidase E2 From
Bradyrhizobium Japonicum
pdb|1OCL|A Chain A, The Crystal Structure Of Malonamidase E2 Complexed With
Malonate From Bradyrhizobium Japonicum
pdb|1OCL|B Chain B, The Crystal Structure Of Malonamidase E2 Complexed With
Malonate From Bradyrhizobium Japonicum
pdb|1OCM|A Chain A, The Crystal Structure Of Malonamidase E2 Covalently
Complexed With Pyrophosphate From Bradyrhizobium
Japonicum
pdb|1OCM|B Chain B, The Crystal Structure Of Malonamidase E2 Covalently
Complexed With Pyrophosphate From Bradyrhizobium
Japonicum
Length = 412
Score = 68.9 bits (167), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 51/157 (32%), Positives = 69/157 (43%), Gaps = 8/157 (5%)
Query: 73 LAGLKFAIKDVFDVKGYVTGFGSPDWKRDHHEAERTAVVVTLLLKNGATCIGKTVLDEFA 132
L G+ IKD+ D T GS ++ + A VV +L + GAT IGKT FA
Sbjct: 54 LRGIAVGIKDIIDTANMPTEMGSEIYR--GWQPRSDAPVVMMLKRAGATIIGKTTTTAFA 111
Query: 133 FGITGENKHYGTPVNPQMPSHIPXXXXXXXXXXXXXQLVDFALGTDTIGCVRVPASFCGI 192
++ +NP H P ++ ALGT T G V PA++CG
Sbjct: 112 ------SRDPTATLNPHNTGHSPGGSSSGSAAAVGAGMIPLALGTQTGGSVIRPAAYCGT 165
Query: 193 LGYRPSHGTVSMIGVLPNSQSLDTVGLLARNASILHR 229
+PS + +GV S +LDTVGL A L R
Sbjct: 166 AAIKPSFRMLPTVGVKCYSWALDTVGLFGARAEDLAR 202
>pdb|3Q47|B Chain B, Crystal Structure Of Tpr Domain Of Chip Complexed With
Pseudophosphorylated Smad1 Peptide
pdb|3Q49|B Chain B, Crystal Structure Of The Tpr Domain Of Chip Complexed With
Hsp70-C Peptide
pdb|3Q4A|B Chain B, Crystal Structure Of The Tpr Domain Of Chip Complexed With
Phosphorylated Smad1 Peptide
Length = 137
Score = 68.9 bits (167), Expect = 7e-12, Method: Composition-based stats.
Identities = 35/104 (33%), Positives = 60/104 (57%)
Query: 488 ASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCS 547
+++ LKE+GN F G+++ +A Y AI N A YY+NRA YL++ +QA DC
Sbjct: 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCR 67
Query: 548 KTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNK 591
+ + LD ++VKA+ G + + Y+EA+ + + A L + +
Sbjct: 68 RALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQR 111
>pdb|1O9Q|A Chain A, Crystal Structure Of The S155c Mutant Of Malonamidase E2
From Bradyrhizobium Japonicum
pdb|1O9Q|B Chain B, Crystal Structure Of The S155c Mutant Of Malonamidase E2
From Bradyrhizobium Japonicum
pdb|1OCH|A Chain A, Crystal Structure Of The S155c Mutant Of Malonamidase E2
From Bradyrhizobium Japonicum
pdb|1OCH|B Chain B, Crystal Structure Of The S155c Mutant Of Malonamidase E2
From Bradyrhizobium Japonicum
Length = 414
Score = 68.6 bits (166), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 51/157 (32%), Positives = 69/157 (43%), Gaps = 8/157 (5%)
Query: 73 LAGLKFAIKDVFDVKGYVTGFGSPDWKRDHHEAERTAVVVTLLLKNGATCIGKTVLDEFA 132
L G+ IKD+ D T GS ++ + A VV +L + GAT IGKT FA
Sbjct: 54 LRGIAVGIKDIIDTANMPTEMGSEIYR--GWQPRSDAPVVMMLKRAGATIIGKTTTTAFA 111
Query: 133 FGITGENKHYGTPVNPQMPSHIPXXXXXXXXXXXXXQLVDFALGTDTIGCVRVPASFCGI 192
++ +NP H P ++ ALGT T G V PA++CG
Sbjct: 112 ------SRDPTATLNPHNTGHSPGGSSSGSAAAVGAGMIPLALGTQTGGXVIRPAAYCGT 165
Query: 193 LGYRPSHGTVSMIGVLPNSQSLDTVGLLARNASILHR 229
+PS + +GV S +LDTVGL A L R
Sbjct: 166 AAIKPSFRMLPTVGVKCYSWALDTVGLFGARAEDLAR 202
>pdb|1OBJ|A Chain A, Crystal Structure Of The T150a Mutant Of Malonamidase E2
From Bradyrhizobium Japonicum
pdb|1OBJ|B Chain B, Crystal Structure Of The T150a Mutant Of Malonamidase E2
From Bradyrhizobium Japonicum
Length = 414
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 50/157 (31%), Positives = 68/157 (43%), Gaps = 8/157 (5%)
Query: 73 LAGLKFAIKDVFDVKGYVTGFGSPDWKRDHHEAERTAVVVTLLLKNGATCIGKTVLDEFA 132
L G+ IKD+ D T GS ++ + A VV +L + GAT IGKT FA
Sbjct: 54 LRGIAVGIKDIIDTANMPTEMGSEIYR--GWQPRSDAPVVMMLKRAGATIIGKTTTTAFA 111
Query: 133 FGITGENKHYGTPVNPQMPSHIPXXXXXXXXXXXXXQLVDFALGTDTIGCVRVPASFCGI 192
++ +NP H P ++ ALG T G V PA++CG
Sbjct: 112 ------SRDPTATLNPHNTGHSPGGSSSGSAAAVGAGMIPLALGAQTGGSVIRPAAYCGT 165
Query: 193 LGYRPSHGTVSMIGVLPNSQSLDTVGLLARNASILHR 229
+PS + +GV S +LDTVGL A L R
Sbjct: 166 AAIKPSFRMLPTVGVKCYSWALDTVGLFGARAEDLAR 202
>pdb|1O9N|A Chain A, Crystal Structure Of The K62a Mutant Of Malonamidase E2
From Bradyrhizobium Japonicum
pdb|1O9N|B Chain B, Crystal Structure Of The K62a Mutant Of Malonamidase E2
From Bradyrhizobium Japonicum
Length = 414
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 50/157 (31%), Positives = 68/157 (43%), Gaps = 8/157 (5%)
Query: 73 LAGLKFAIKDVFDVKGYVTGFGSPDWKRDHHEAERTAVVVTLLLKNGATCIGKTVLDEFA 132
L G+ I D+ D T GS ++ + A VV +L + GAT IGKT FA
Sbjct: 54 LRGIAVGIADIIDTANMPTEMGSEIYR--GWQPRSDAPVVMMLKRAGATIIGKTTTTAFA 111
Query: 133 FGITGENKHYGTPVNPQMPSHIPXXXXXXXXXXXXXQLVDFALGTDTIGCVRVPASFCGI 192
++ +NP H P ++ ALGT T G V PA++CG
Sbjct: 112 ------SRDPTATLNPHNTGHSPGGSSSGSAAAVGAGMIPLALGTQTGGSVIRPAAYCGT 165
Query: 193 LGYRPSHGTVSMIGVLPNSQSLDTVGLLARNASILHR 229
+PS + +GV S +LDTVGL A L R
Sbjct: 166 AAIKPSFRMLPTVGVKCYSWALDTVGLFGARAEDLAR 202
>pdb|2C2L|A Chain A, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
pdb|2C2L|B Chain B, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
pdb|2C2L|C Chain C, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
pdb|2C2L|D Chain D, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
Length = 281
Score = 66.6 bits (161), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 60/104 (57%)
Query: 488 ASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCS 547
+++ LKE+GN F G+++ +A Y AI N A YY+NRA YL++ +QA DC
Sbjct: 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCR 62
Query: 548 KTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNK 591
+ + LD ++VKA+ G + + Y+EA+ + + A L + +
Sbjct: 63 RALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQR 106
>pdb|1OBI|A Chain A, Crystal Structure Of The G130a Mutant Of Malonamidase E2
From Bradyrhizobium Japonicum
pdb|1OBI|B Chain B, Crystal Structure Of The G130a Mutant Of Malonamidase E2
From Bradyrhizobium Japonicum
Length = 414
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 51/157 (32%), Positives = 69/157 (43%), Gaps = 8/157 (5%)
Query: 73 LAGLKFAIKDVFDVKGYVTGFGSPDWKRDHHEAERTAVVVTLLLKNGATCIGKTVLDEFA 132
L G+ IKD+ D T GS ++ + A VV +L + GAT IGKT FA
Sbjct: 54 LRGIAVGIKDIIDTANMPTEMGSEIYR--GWQPRSDAPVVMMLKRAGATIIGKTTTTAFA 111
Query: 133 FGITGENKHYGTPVNPQMPSHIPXXXXXXXXXXXXXQLVDFALGTDTIGCVRVPASFCGI 192
++ +NP H P ++ ALGT T G V PA++CG
Sbjct: 112 ------SRDPTATLNPHNTGHSPGASSSGSAAAVGAGMIPLALGTQTGGSVIRPAAYCGT 165
Query: 193 LGYRPSHGTVSMIGVLPNSQSLDTVGLLARNASILHR 229
+PS + +GV S +LDTVGL A L R
Sbjct: 166 AAIKPSFRMLPTVGVKCYSWALDTVGLFGARAEDLAR 202
>pdb|1M21|A Chain A, Crystal Structure Analysis Of The Peptide Amidase Pam In
Complex With The Competitive Inhibitor Chymostatin
pdb|1M21|B Chain B, Crystal Structure Analysis Of The Peptide Amidase Pam In
Complex With The Competitive Inhibitor Chymostatin
pdb|1M22|A Chain A, X-Ray Structure Of Native Peptide Amidase From
Stenotrophomonas Maltophilia At 1.4 A
pdb|1M22|B Chain B, X-Ray Structure Of Native Peptide Amidase From
Stenotrophomonas Maltophilia At 1.4 A
Length = 503
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 51/165 (30%), Positives = 72/165 (43%), Gaps = 22/165 (13%)
Query: 73 LAGLKFAIKDVFDVKGYVTGFGS-------PDWKRDHHEAERTAVVVTLLLKNGATCIGK 125
L G+ +KD + T GS PD A +V L GA +GK
Sbjct: 78 LHGIPLLLKDNINAAPMATSAGSLALQGFRPD----------DAYLVRRLRDAGAVVLGK 127
Query: 126 TVLDEFA-----FGITGENKHYGTPVNPQMPSHIPXXXXXXXXXXXXXQLVDFALGTDTI 180
T L E+A I+G + G NP SH P L A+GT+T
Sbjct: 128 TNLSEWANFRGNDSISGWSARGGQTRNPYRISHSPCGSSSGSAVAVAANLASVAIGTETD 187
Query: 181 GCVRVPASFCGILGYRPSHGTVSMIGVLPNSQSLDTVGLLARNAS 225
G + PA+ G++G +P+ G VS G++P S S DT G +AR+ +
Sbjct: 188 GSIVCPAAINGVVGLKPTVGLVSRDGIIPISFSQDTAGPMARSVA 232
>pdb|1ELW|A Chain A, Crystal Structure Of The Tpr1 Domain Of Hop In Complex
With A Hsc70 Peptide
pdb|1ELW|B Chain B, Crystal Structure Of The Tpr1 Domain Of Hop In Complex
With A Hsc70 Peptide
Length = 118
Score = 62.8 bits (151), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 40/99 (40%), Positives = 55/99 (55%)
Query: 492 LKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTIS 551
LKEKGN A + A+ YSEAIKL+ + YSNR+AAY + G +Q+A ED KT+
Sbjct: 7 LKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVD 66
Query: 552 LDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQN 590
L K Y R+ A E L + EA + ++ + E N
Sbjct: 67 LKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANN 105
>pdb|3FP2|A Chain A, Crystal Structure Of Tom71 Complexed With Hsp82 C-Terminal
Fragment
pdb|3FP3|A Chain A, Crystal Structure Of Tom71
pdb|3FP4|A Chain A, Crystal Structure Of Tom71 Complexed With Ssa1 C-Terminal
Fragment
Length = 537
Score = 62.4 bits (150), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 51/89 (57%)
Query: 492 LKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTIS 551
LK +GN F K +N+A+ YY AI+L+ +YSN +A Y+ G ++ E +K +
Sbjct: 28 LKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALE 87
Query: 552 LDKKNVKAYLRRGTAREALFCYNEALQDF 580
+ + KA LRR +A E+L + +A+ D
Sbjct: 88 IKPDHSKALLRRASANESLGNFTDAMFDL 116
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 53/117 (45%), Gaps = 13/117 (11%)
Query: 446 ITYHGGDKFLLDTVLDLYDSLQEQVNIASNLVPLPDTNGSIDASELLKEKGNAAFKGKQW 505
+ Y G FL + +LD LQE +N L P P++ + + KE FK
Sbjct: 246 LCYTGIFHFLKNNLLDAQVLLQESIN----LHPTPNSYIFLALTLADKENSQEFFK---- 297
Query: 506 NKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLR 562
++ +A+ LN Y +R Y L ++ A+ED K SL+ +NV Y++
Sbjct: 298 -----FFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQ 349
>pdb|3LCA|A Chain A, Structure Of Tom71 Complexed With Hsp70 Ssa1 C Terminal
Tail Indicating Conformational Plasticity
Length = 533
Score = 62.4 bits (150), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 51/89 (57%)
Query: 492 LKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTIS 551
LK +GN F K +N+A+ YY AI+L+ +YSN +A Y+ G ++ E +K +
Sbjct: 24 LKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALE 83
Query: 552 LDKKNVKAYLRRGTAREALFCYNEALQDF 580
+ + KA LRR +A E+L + +A+ D
Sbjct: 84 IKPDHSKALLRRASANESLGNFTDAMFDL 112
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 53/117 (45%), Gaps = 13/117 (11%)
Query: 446 ITYHGGDKFLLDTVLDLYDSLQEQVNIASNLVPLPDTNGSIDASELLKEKGNAAFKGKQW 505
+ Y G FL + +LD LQE +N L P P++ + + KE FK
Sbjct: 242 LCYTGIFHFLKNNLLDAQVLLQESIN----LHPTPNSYIFLALTLADKENSQEFFK---- 293
Query: 506 NKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLR 562
++ +A+ LN Y +R Y L ++ A+ED K SL+ +NV Y++
Sbjct: 294 -----FFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQ 345
>pdb|3SZ7|A Chain A, Crystal Structure Of The Sgt2 Tpr Domain From Aspergillus
Fumigatus
Length = 164
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 37/113 (32%), Positives = 61/113 (53%), Gaps = 7/113 (6%)
Query: 475 NLVPLPDTNGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYL 534
++ P P+ S+ LK +GNAA K+++KA++ Y++A+ + + Y SNRAAAY
Sbjct: 4 SMAPTPE-------SDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYS 56
Query: 535 ELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLE 587
G ++A ED +D K KA+ R G AR + Y A + ++ + E
Sbjct: 57 ASGQHEKAAEDAELATVVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAE 109
>pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA0|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 125
Score = 59.7 bits (143), Expect = 5e-09, Method: Composition-based stats.
Identities = 32/107 (29%), Positives = 59/107 (55%)
Query: 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDC 546
+++E GNA +K +++A+ YY +A++L+ +A + N AY + G + +A E
Sbjct: 7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYY 66
Query: 547 SKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAA 593
K + LD N +A+ G A Y+EA++ ++ A+ L+P N A
Sbjct: 67 QKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEA 113
Score = 45.8 bits (107), Expect = 6e-05, Method: Composition-based stats.
Identities = 23/73 (31%), Positives = 41/73 (56%)
Query: 496 GNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKK 555
GNA +K +++A+ YY +A++L+ +A + N AY + G + +A E K + LD
Sbjct: 50 GNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN 109
Query: 556 NVKAYLRRGTARE 568
N +A G A++
Sbjct: 110 NAEAKQNLGNAKQ 122
Score = 42.4 bits (98), Expect = 8e-04, Method: Composition-based stats.
Identities = 24/74 (32%), Positives = 38/74 (51%)
Query: 520 GTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEALQD 579
G SA + N AY + G + +A E K + LD N +A+ G A Y+EA++
Sbjct: 6 GNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEY 65
Query: 580 FKHAMVLEPQNKAA 593
++ A+ L+P N A
Sbjct: 66 YQKALELDPNNAEA 79
>pdb|1KT0|A Chain A, Structure Of The Large Fkbp-like Protein, Fkbp51, Involved
In Steroid Receptor Complexes
Length = 457
Score = 59.3 bits (142), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 58/213 (27%), Positives = 91/213 (42%), Gaps = 39/213 (18%)
Query: 421 GSMSGCCQVAIPIGKYNEHPISISF-------------ITY---------HGGDKFLLDT 458
G M C VA +G+ +H I I I Y G KF ++
Sbjct: 178 GRMFDCRDVAFTVGEGEDHDIPIGIDKALEKMQREEQCILYLGPRYGFGEAGKPKFGIEP 237
Query: 459 VLDL-YDSLQEQVNIASNLVPLPDTNGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAI- 516
+L Y+ + A + DT ++ + ++KEKG FKG ++ +AV Y + +
Sbjct: 238 NAELIYEVTLKSFEKAKESWEM-DTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVS 296
Query: 517 ----------KLNGTSATY----YSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLR 562
K + S ++ + N A YL+L + +A E C K + LD N K R
Sbjct: 297 WLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYR 356
Query: 563 RGTAREALFCYNEALQDFKHAMVLEPQNKAANL 595
RG A+ + + A DF+ + + PQNKAA L
Sbjct: 357 RGEAQLLMNEFESAKGDFEKVLEVNPQNKAARL 389
>pdb|1KT1|A Chain A, Structure Of The Large Fkbp-Like Protein, Fkbp51, Involved
In Steroid Receptor Complexes
Length = 457
Score = 59.3 bits (142), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 65/130 (50%), Gaps = 15/130 (11%)
Query: 481 DTNGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAI-----------KLNGTSATY---- 525
DT ++ + ++KEKG FKG ++ +AV Y + + K + S ++
Sbjct: 260 DTKEKLEQAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAA 319
Query: 526 YSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMV 585
+ N A YL+L + +A E C K + LD N K RRG A+ + + A DF+ +
Sbjct: 320 FLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLE 379
Query: 586 LEPQNKAANL 595
+ PQNKAA L
Sbjct: 380 VNPQNKAARL 389
>pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Trigonal Crystal Form)
pdb|2HYZ|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Orthorombic Crystal Form)
Length = 136
Score = 58.2 bits (139), Expect = 1e-08, Method: Composition-based stats.
Identities = 30/98 (30%), Positives = 57/98 (58%)
Query: 496 GNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKK 555
GNA +K +++A+ YY +A++L+ SA + N AY + G + +A E K + LD +
Sbjct: 8 GNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 67
Query: 556 NVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAA 593
+ +A+ G A Y+EA++ ++ A+ L+P++ A
Sbjct: 68 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEA 105
Score = 57.0 bits (136), Expect = 3e-08, Method: Composition-based stats.
Identities = 29/95 (30%), Positives = 56/95 (58%)
Query: 496 GNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKK 555
GNA +K +++A+ YY +A++L+ SA + N AY + G + +A E K + LD +
Sbjct: 42 GNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 101
Query: 556 NVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQN 590
+ +A+ G A Y+EA++ ++ A+ L+P++
Sbjct: 102 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS 136
Score = 35.8 bits (81), Expect = 0.064, Method: Composition-based stats.
Identities = 20/71 (28%), Positives = 38/71 (53%)
Query: 523 ATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKH 582
A + N AY + G + +A E K + LD ++ +A+ G A Y+EA++ ++
Sbjct: 1 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQK 60
Query: 583 AMVLEPQNKAA 593
A+ L+P++ A
Sbjct: 61 ALELDPRSAEA 71
>pdb|3UPV|A Chain A, Tpr2b-Domain:phsp70-Complex Of Yeast Sti1
Length = 126
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/90 (40%), Positives = 49/90 (54%)
Query: 489 SELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSK 548
+E + +G F W AV Y+E IK A YSNRAAA +L F +A DC+K
Sbjct: 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNK 63
Query: 549 TISLDKKNVKAYLRRGTAREALFCYNEALQ 578
I D V+AY+R+ TA+ A+ Y AL+
Sbjct: 64 AIEKDPNFVRAYIRKATAQIAVKEYASALE 93
>pdb|1IHG|A Chain A, Bovine Cyclophilin 40, Monoclinic Form
pdb|1IIP|A Chain A, Bovine Cyclophilin 40, Tetragonal Form
Length = 370
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 60/132 (45%), Gaps = 16/132 (12%)
Query: 477 VPLPDTNGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAI----------------KLNG 520
V L D + + SE LK GN FK + W A+ Y++ + KL
Sbjct: 211 VDLKDVDKILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQP 270
Query: 521 TSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEALQDF 580
+ + N A L++ +Q A + C + + +D N KA RR + L Y++AL D
Sbjct: 271 VALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADL 330
Query: 581 KHAMVLEPQNKA 592
K A + P++KA
Sbjct: 331 KKAQEIAPEDKA 342
>pdb|1ELR|A Chain A, Crystal Structure Of The Tpr2a Domain Of Hop In Complex
With The Hsp90 Peptide Meevd
Length = 131
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 40/129 (31%), Positives = 71/129 (55%), Gaps = 16/129 (12%)
Query: 489 SELLKEK--GNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDC 546
+ LKEK GN A+K K ++ A+ +Y +A +L+ T+ TY +N+AA Y E G + + E C
Sbjct: 2 KQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELC 61
Query: 547 SKTISLDKKN-------VKAYLRRGTA-------REALFCYNEALQDFKHAMVLEPQNKA 592
K I + ++N KAY R G + ++A+ YN++L + + VL+ +A
Sbjct: 62 EKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVLKKCQQA 121
Query: 593 ANLAEKRLR 601
+ +++ R
Sbjct: 122 EKILKEQER 130
>pdb|3UQ3|A Chain A, Tpr2ab-Domain:phsp90-Complex Of Yeast Sti1
Length = 258
Score = 56.2 bits (134), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 35/84 (41%), Positives = 46/84 (54%)
Query: 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDK 554
+G F W AV Y+E IK A YSNRAAA +L F +A DC+K I D
Sbjct: 145 EGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDP 204
Query: 555 KNVKAYLRRGTAREALFCYNEALQ 578
V+AY+R+ TA+ A+ Y AL+
Sbjct: 205 NFVRAYIRKATAQIAVKEYASALE 228
Score = 35.8 bits (81), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 34/50 (68%), Gaps = 1/50 (2%)
Query: 493 KEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQA 542
K +GN +K +Q+++A+ +Y++A +L+ TY +NRAAA E G ++ A
Sbjct: 9 KAEGNKFYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETA 57
>pdb|3ESK|A Chain A, Structure Of Hop Tpr2a Domain In Complex With The
Non-Cognate Hsc70 Peptide Ligand
Length = 129
Score = 55.5 bits (132), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 43/129 (33%), Positives = 69/129 (53%), Gaps = 20/129 (15%)
Query: 489 SELLKEK--GNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDC 546
+ LKEK GN A+K K ++ A+ +Y +A +L+ T+ TY +N+AA Y E G + + E C
Sbjct: 2 KQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELC 61
Query: 547 SKTISLDKKN-------VKAYLRRGTA-------REALFCYNEALQDFKHAMVLEPQNKA 592
K I + ++N KAY R G + ++A+ YN++L + + VL K
Sbjct: 62 EKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVL----KK 117
Query: 593 ANLAEKRLR 601
AEK L+
Sbjct: 118 CQQAEKILK 126
>pdb|2GW1|A Chain A, Crystal Structure Of The Yeast Tom70
pdb|2GW1|B Chain B, Crystal Structure Of The Yeast Tom70
Length = 514
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 51/88 (57%), Gaps = 1/88 (1%)
Query: 492 LKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTIS 551
LK+KGN F+ K+++ A+ YY+ A++L +YSN +A Y+ +G ++ E +K +
Sbjct: 9 LKDKGNQFFRNKKYDDAIKYYNWALELK-EDPVFYSNLSACYVSVGDLKKVVEMSTKALE 67
Query: 552 LDKKNVKAYLRRGTAREALFCYNEALQD 579
L K LRR +A E L + +A+ D
Sbjct: 68 LKPDYSKVLLRRASANEGLGKFADAMFD 95
Score = 33.9 bits (76), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 30/53 (56%)
Query: 510 NYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLR 562
NY+ +A+KL+ +++ Y +R L + QA +D K LD +N+ Y++
Sbjct: 291 NYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQ 343
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 22/44 (50%)
Query: 547 SKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQN 590
K + LD N Y RG L Y++A +DF A L+P+N
Sbjct: 294 DKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPEN 337
>pdb|4GCN|A Chain A, N-Terminal Domain Of Stress-Induced Protein-1 (Sti-1) From
C.Elegans
pdb|4GCN|B Chain B, N-Terminal Domain Of Stress-Induced Protein-1 (Sti-1) From
C.Elegans
Length = 127
Score = 54.3 bits (129), Expect = 2e-07, Method: Composition-based stats.
Identities = 34/110 (30%), Positives = 59/110 (53%), Gaps = 7/110 (6%)
Query: 482 TNGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQ 541
+N DA+ K+ GNAA+K K + KA +Y +AI+L+ ++ T+Y+N+AA Y E F +
Sbjct: 1 SNAMTDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAE 60
Query: 542 AEEDCSKTISLDKKN-------VKAYLRRGTAREALFCYNEALQDFKHAM 584
+ C K + + ++ KA R G A + + A+Q F ++
Sbjct: 61 CVQFCEKAVEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSL 110
>pdb|1QZ2|A Chain A, Crystal Structure Of Fkbp52 C-Terminal Domain Complex With
The C-Terminal Peptide Meevd Of Hsp90
pdb|1QZ2|B Chain B, Crystal Structure Of Fkbp52 C-Terminal Domain Complex With
The C-Terminal Peptide Meevd Of Hsp90
pdb|1QZ2|C Chain C, Crystal Structure Of Fkbp52 C-Terminal Domain Complex With
The C-Terminal Peptide Meevd Of Hsp90
Length = 336
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 40/144 (27%), Positives = 66/144 (45%), Gaps = 19/144 (13%)
Query: 481 DTNGSIDASELLKEKGNAAFKGKQWNKAVNYY---------------SEAIKLNGTSATY 525
++ ++ S ++KE+G FK ++ +A+ Y EA K
Sbjct: 139 NSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLAS 198
Query: 526 YSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMV 585
+ N A +L+L F A E C+K + LD N K RRG A A+ + A DF+ +
Sbjct: 199 HLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLFRRGEAHLAVNDFELARADFQKVLQ 258
Query: 586 LEPQNKAAN----LAEKRLRKLIG 605
L P NKAA + ++R+R+ +
Sbjct: 259 LYPNNKAAKTQLAVCQQRIRRQLA 282
>pdb|2WQH|A Chain A, Crystal Structure Of Ctpr3y3
Length = 125
Score = 53.1 bits (126), Expect = 4e-07, Method: Composition-based stats.
Identities = 31/107 (28%), Positives = 56/107 (52%)
Query: 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDC 546
+++E GNA +K +++A+ YY +A++L +A + N AY + G + +A E
Sbjct: 7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYY 66
Query: 547 SKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAA 593
K + L N +A+ G A Y+EA++ ++ A+ L P N A
Sbjct: 67 QKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEA 113
Score = 40.8 bits (94), Expect = 0.002, Method: Composition-based stats.
Identities = 22/73 (30%), Positives = 39/73 (53%)
Query: 496 GNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKK 555
GNA +K +++A+ YY +A++L +A + N AY + G + +A E K + L
Sbjct: 50 GNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPN 109
Query: 556 NVKAYLRRGTARE 568
N +A G A++
Sbjct: 110 NAEAKQNLGNAKQ 122
Score = 37.0 bits (84), Expect = 0.028, Method: Composition-based stats.
Identities = 23/74 (31%), Positives = 36/74 (48%)
Query: 520 GTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEALQD 579
G SA + N AY + G + +A E K + L N +A+ G A Y+EA++
Sbjct: 6 GNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEY 65
Query: 580 FKHAMVLEPQNKAA 593
++ A+ L P N A
Sbjct: 66 YQKALELYPNNAEA 79
Score = 29.3 bits (64), Expect = 6.2, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 7/48 (14%)
Query: 496 GNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAE 543
GNA +K +++A+ YY +A++L Y N A A LG +Q +
Sbjct: 84 GNAYYKQGDYDEAIEYYQKALEL-------YPNNAEAKQNLGNAKQKQ 124
>pdb|3FWV|A Chain A, Crystal Structure Of A Redesigned Tpr Protein, T-Mod(Vmy),
In Complex With Meevf Peptide
pdb|3FWV|B Chain B, Crystal Structure Of A Redesigned Tpr Protein, T-Mod(Vmy),
In Complex With Meevf Peptide
Length = 128
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 67/124 (54%), Gaps = 16/124 (12%)
Query: 488 ASELLKEK--GNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEED 545
+ + LKEK GN A+K K ++ A+ +Y +A +L+ T+ TY N+AA Y E G + + E
Sbjct: 1 SKQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYIVNQAAVYFEKGDYNKCREL 60
Query: 546 CSKTISLDKKNVK-------AYLRRGTA-------REALFCYNEALQDFKHAMVLEPQNK 591
C K I + ++N + AY R G + ++A+ YN++L + + VL+ +
Sbjct: 61 CEKAIEVGRENREDYRMIAYAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTPKVLKKCQQ 120
Query: 592 AANL 595
A +
Sbjct: 121 AEKI 124
>pdb|3RKV|A Chain A, C-Terminal Domain Of Protein C56c10.10, A Putative
Peptidylprolyl Isomerase, From Caenorhabditis Elegans
Length = 162
Score = 52.4 bits (124), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 57/117 (48%), Gaps = 18/117 (15%)
Query: 483 NGSIDASELLKEKGNAAFKGKQWNKAVNYYSEA------------------IKLNGTSAT 524
+ + + E L++KGN F K + +A++ Y +A ++L+ +
Sbjct: 5 DDKLKSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIP 64
Query: 525 YYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEALQDFK 581
Y+N + YL +G +AEE S+ + ++ N KA RR AR A + +EA +D K
Sbjct: 65 LYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLK 121
>pdb|3A2Q|A Chain A, Structure Of 6-Aminohexanoate Cyclic Dimer Hydrolase
Complexed With Substrate
Length = 493
Score = 52.0 bits (123), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 48/183 (26%), Positives = 75/183 (40%), Gaps = 13/183 (7%)
Query: 73 LAGLKFAIKDVFDV-KGYVTGFGSPDWKRDHHEAERTAVVVTLLLKNGATCIGKTVLDEF 131
AG+ + +KD+ V +G + K + A+ A V + G +GKT E
Sbjct: 64 FAGVPYLLKDLTVVSQGDINTSSIKGMKESGYRADHDAYFVQRMRAAGFVLLGKTNTPEM 123
Query: 132 AFGITGENKHYGTPVNPQMPSHIPXXXXXXXXXXXXXQLVDFALGTDTIGCVRVPASFCG 191
+T E + +G NP L A G D G VR+PAS CG
Sbjct: 124 GNQVTTEPEAWGATRNPWNLGRSVGGSSGGSGAAVAAALSPVAHGNDAAGAVRIPASVCG 183
Query: 192 ILGYRPSHGTVSMIGVLPNSQSLDTV---GLLARN----ASIL-----HRVGHVLLQLNA 239
++G +P+ G +S ++ +S ++ GL AR+ A++L HR G A
Sbjct: 184 VVGLKPTRGRISPGPLVTDSDNVAGAAHEGLFARSVRDIAALLDVVSGHRPGDTFCAPTA 243
Query: 240 VEP 242
P
Sbjct: 244 SRP 246
>pdb|1P5Q|A Chain A, Crystal Structure Of Fkbp52 C-Terminal Domain
pdb|1P5Q|B Chain B, Crystal Structure Of Fkbp52 C-Terminal Domain
pdb|1P5Q|C Chain C, Crystal Structure Of Fkbp52 C-Terminal Domain
Length = 336
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/144 (27%), Positives = 66/144 (45%), Gaps = 19/144 (13%)
Query: 481 DTNGSIDASELLKEKGNAAFKGKQWNKAVNYY---------------SEAIKLNGTSATY 525
++ ++ S ++KE+G FK ++ +A+ Y EA K
Sbjct: 139 NSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLAS 198
Query: 526 YSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMV 585
+ N A +L+L F A E C+K + LD N K RRG A A+ + A DF+ +
Sbjct: 199 HLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQ 258
Query: 586 LEPQNKAAN----LAEKRLRKLIG 605
L P NKAA + ++R+R+ +
Sbjct: 259 LYPNNKAAKTQLAVCQQRIRRQLA 282
>pdb|3A2P|A Chain A, Structure Of 6-Aminohexanoate Cyclic Dimer Hydrolase
Length = 493
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 48/183 (26%), Positives = 75/183 (40%), Gaps = 13/183 (7%)
Query: 73 LAGLKFAIKDVFDV-KGYVTGFGSPDWKRDHHEAERTAVVVTLLLKNGATCIGKTVLDEF 131
AG+ + +KD+ V +G + K + A+ A V + G +GKT E
Sbjct: 64 FAGVPYLLKDLTVVSQGDINTSSIKGMKESGYRADHDAYFVQRMRAAGFVLLGKTNTPEM 123
Query: 132 AFGITGENKHYGTPVNPQMPSHIPXXXXXXXXXXXXXQLVDFALGTDTIGCVRVPASFCG 191
+T E + +G NP L A G D G VR+PAS CG
Sbjct: 124 GNQVTTEPEAWGATRNPWNLGRSVGGSSGGSGAAVAAALSPVAHGNDAAGSVRIPASVCG 183
Query: 192 ILGYRPSHGTVSMIGVLPNSQSLDTV---GLLARN----ASIL-----HRVGHVLLQLNA 239
++G +P+ G +S ++ +S ++ GL AR+ A++L HR G A
Sbjct: 184 VVGLKPTRGRISPGPLVTDSDNVAGAAHEGLFARSVRDIAALLDVVSGHRPGDTFCAPTA 243
Query: 240 VEP 242
P
Sbjct: 244 SRP 246
>pdb|1NA3|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA3|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 91
Score = 46.2 bits (108), Expect = 5e-05, Method: Composition-based stats.
Identities = 24/82 (29%), Positives = 45/82 (54%)
Query: 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDC 546
+++E GNA +K +++A+ YY +A++L+ +A + N AY + G + +A E
Sbjct: 7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYY 66
Query: 547 SKTISLDKKNVKAYLRRGTARE 568
K + LD N +A G A++
Sbjct: 67 QKALELDPNNAEAKQNLGNAKQ 88
Score = 42.4 bits (98), Expect = 8e-04, Method: Composition-based stats.
Identities = 24/74 (32%), Positives = 38/74 (51%)
Query: 520 GTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEALQD 579
G SA + N AY + G + +A E K + LD N +A+ G A Y+EA++
Sbjct: 6 GNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEY 65
Query: 580 FKHAMVLEPQNKAA 593
++ A+ L+P N A
Sbjct: 66 YQKALELDPNNAEA 79
>pdb|2WAP|A Chain A, 3d-Crystal Structure Of Humanized-Rat Fatty Acid Amide
Hydrolase (Faah) Conjugated With The Drug-Like Urea
Inhibitor Pf-3845
pdb|2WAP|B Chain B, 3d-Crystal Structure Of Humanized-Rat Fatty Acid Amide
Hydrolase (Faah) Conjugated With The Drug-Like Urea
Inhibitor Pf-3845
Length = 543
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 57/135 (42%), Gaps = 2/135 (1%)
Query: 73 LAGLKFAIKDVFDVKGYVTGFGSPDWKRDHHEAERTAVVVTLLLKNGATCIGKTVLDEFA 132
L G+ ++K+ F KG+ + G + +E VVV +L GA T + +
Sbjct: 104 LYGVPVSLKECFSYKGHDSTLGLS--LNEGMPSESDCVVVQVLKLQGAVPFVHTNVPQSM 161
Query: 133 FGITGENKHYGTPVNPQMPSHIPXXXXXXXXXXXXXQLVDFALGTDTIGCVRVPASFCGI 192
F N +G +NP S P LGTD G +R P++FCGI
Sbjct: 162 FSYDCSNPLFGQTMNPWKSSKSPGGSSGGEGALIGSGGSPLGLGTDIGGSIRFPSAFCGI 221
Query: 193 LGYRPSHGTVSMIGV 207
G +P+ +S G+
Sbjct: 222 CGLKPTGNRLSKSGL 236
>pdb|2WJ1|A Chain A, 3d-Crystal Structure Of Humanized-Rat Fatty Acid Amide
Hydrolase (Faah) Conjugated With
7-Phenyl-1-(4-(Pyridin-2- Yl)oxazol-2-Yl)heptan-1-One,
An Alpha-Ketooxazole
pdb|2WJ1|B Chain B, 3d-Crystal Structure Of Humanized-Rat Fatty Acid Amide
Hydrolase (Faah) Conjugated With
7-Phenyl-1-(4-(Pyridin-2- Yl)oxazol-2-Yl)heptan-1-One,
An Alpha-Ketooxazole
pdb|2WJ2|A Chain A, 3d-Crystal Structure Of Humanized-Rat Fatty Acid Amide
Hydrolase (Faah) Conjugated With
7-Phenyl-1-(5-(Pyridin-2- Yl)oxazol-2-Yl)heptan-1-One,
An Alpha-Ketooxazole
pdb|2WJ2|B Chain B, 3d-Crystal Structure Of Humanized-Rat Fatty Acid Amide
Hydrolase (Faah) Conjugated With
7-Phenyl-1-(5-(Pyridin-2- Yl)oxazol-2-Yl)heptan-1-One,
An Alpha-Ketooxazole
pdb|3K7F|A Chain A, Crystal Structure Analysis Of A
PhenhexylOXAZOLECARBOXYPYRIDINE ALPHA-Ketoheterocycle
Inhibitor Bound To A Humanized Variant Of Fatty Acid
Amide Hydrolase'
pdb|3K7F|B Chain B, Crystal Structure Analysis Of A
PhenhexylOXAZOLECARBOXYPYRIDINE ALPHA-Ketoheterocycle
Inhibitor Bound To A Humanized Variant Of Fatty Acid
Amide Hydrolase'
pdb|3K83|A Chain A, Crystal Structure Analysis Of A
BiphenylOXAZOLECARBOXYPYRIDINE ALPHA-Ketoheterocycle
Inhibitor Bound To A Humanized Variant Of Fatty Acid
Amide Hydrolase
pdb|3K83|B Chain B, Crystal Structure Analysis Of A
BiphenylOXAZOLECARBOXYPYRIDINE ALPHA-Ketoheterocycle
Inhibitor Bound To A Humanized Variant Of Fatty Acid
Amide Hydrolase
pdb|3K84|A Chain A, Crystal Structure Analysis Of A OleylOXADIAZOLEPYRIDINE
Inhibitor Bound To A Humanized Variant Of Fatty Acid
Amide Hydrolase
pdb|3K84|B Chain B, Crystal Structure Analysis Of A OleylOXADIAZOLEPYRIDINE
Inhibitor Bound To A Humanized Variant Of Fatty Acid
Amide Hydrolase
pdb|3LJ6|A Chain A, 3d-Crystal Structure Of Humanized-Rat Fatty Acid Amide
Hydrolase (Faah) Conjugated With The Drug-Like Urea
Inhibitor Pf-3845 At 2.42a Resolution
pdb|3LJ6|B Chain B, 3d-Crystal Structure Of Humanized-Rat Fatty Acid Amide
Hydrolase (Faah) Conjugated With The Drug-Like Urea
Inhibitor Pf-3845 At 2.42a Resolution
pdb|3LJ7|A Chain A, 3d-Crystal Structure Of Humanized-Rat Fatty Acid Amide
Hydrolase (Faah) Conjugated With Carbamate Inhibitor
Urb597
pdb|3LJ7|B Chain B, 3d-Crystal Structure Of Humanized-Rat Fatty Acid Amide
Hydrolase (Faah) Conjugated With Carbamate Inhibitor
Urb597
pdb|3OJ8|A Chain A, Alpha-Ketoheterocycle Inhibitors Of Fatty Acid Amide
Hydrolase Containing Additional Conformational
Contraints In The Acyl Side Chain
pdb|3OJ8|B Chain B, Alpha-Ketoheterocycle Inhibitors Of Fatty Acid Amide
Hydrolase Containing Additional Conformational
Contraints In The Acyl Side Chain
pdb|3PPM|A Chain A, Crystal Structure Of A Noncovalently Bound
Alpha-Ketoheterocycle Inhibitor
(PhenhexylOXADIAZOLEPYRIDINE) TO A HUMANIZED VARIANT OF
Fatty Acid Amide Hydrolase
pdb|3PPM|B Chain B, Crystal Structure Of A Noncovalently Bound
Alpha-Ketoheterocycle Inhibitor
(PhenhexylOXADIAZOLEPYRIDINE) TO A HUMANIZED VARIANT OF
Fatty Acid Amide Hydrolase
pdb|3PR0|A Chain A, Crystal Structure Of A Covalently Bound
Alpha-Ketoheterocycle Inhibitor
(PhenhexylOXADIAZOLEPYRIDINE) TO A HUMANIZED VARIANT OF
Fatty Acid Amide Hydrolase
pdb|3PR0|B Chain B, Crystal Structure Of A Covalently Bound
Alpha-Ketoheterocycle Inhibitor
(PhenhexylOXADIAZOLEPYRIDINE) TO A HUMANIZED VARIANT OF
Fatty Acid Amide Hydrolase
Length = 573
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 57/135 (42%), Gaps = 2/135 (1%)
Query: 73 LAGLKFAIKDVFDVKGYVTGFGSPDWKRDHHEAERTAVVVTLLLKNGATCIGKTVLDEFA 132
L G+ ++K+ F KG+ + G + +E VVV +L GA T + +
Sbjct: 128 LYGVPVSLKECFSYKGHDSTLGLS--LNEGMPSESDCVVVQVLKLQGAVPFVHTNVPQSM 185
Query: 133 FGITGENKHYGTPVNPQMPSHIPXXXXXXXXXXXXXQLVDFALGTDTIGCVRVPASFCGI 192
F N +G +NP S P LGTD G +R P++FCGI
Sbjct: 186 FSYDCSNPLFGQTMNPWKSSKSPGGSSGGEGALIGSGGSPLGLGTDIGGSIRFPSAFCGI 245
Query: 193 LGYRPSHGTVSMIGV 207
G +P+ +S G+
Sbjct: 246 CGLKPTGNRLSKSGL 260
>pdb|2VYA|A Chain A, Crystal Structure Of Fatty Acid Amide Hydrolase Conjugated
With The Drug-Like Inhibitor Pf-750
pdb|2VYA|B Chain B, Crystal Structure Of Fatty Acid Amide Hydrolase Conjugated
With The Drug-Like Inhibitor Pf-750
Length = 587
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 57/135 (42%), Gaps = 2/135 (1%)
Query: 73 LAGLKFAIKDVFDVKGYVTGFGSPDWKRDHHEAERTAVVVTLLLKNGATCIGKTVLDEFA 132
L G+ ++K+ F KG+ + G + +E VVV +L GA T + +
Sbjct: 142 LYGVPVSLKECFSYKGHDSTLGLS--LNEGMPSESDCVVVQVLKLQGAVPFVHTNVPQSM 199
Query: 133 FGITGENKHYGTPVNPQMPSHIPXXXXXXXXXXXXXQLVDFALGTDTIGCVRVPASFCGI 192
F N +G +NP S P LGTD G +R P++FCGI
Sbjct: 200 FSYDCSNPLFGQTMNPWKSSKSPGGSSGGEGALIGSGGSPLGLGTDIGGSIRFPSAFCGI 259
Query: 193 LGYRPSHGTVSMIGV 207
G +P+ +S G+
Sbjct: 260 CGLKPTGNRLSKSGL 274
>pdb|2IF4|A Chain A, Crystal Structure Of A Multi-Domain Immunophilin From
Arabidopsis Thaliana
Length = 338
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 56/124 (45%), Gaps = 17/124 (13%)
Query: 486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATY-----------------YSN 528
I A++ K GN+ FK ++ +A+ Y AI G + + N
Sbjct: 176 IGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLN 235
Query: 529 RAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEP 588
AA ++L + +A C+ ++ ++KN KA RRG A+ L + A DF+ A P
Sbjct: 236 IAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAP 295
Query: 589 QNKA 592
+KA
Sbjct: 296 DDKA 299
>pdb|4HBP|A Chain A, Crystal Structure Of Faah In Complex With Inhibitor
pdb|4HBP|B Chain B, Crystal Structure Of Faah In Complex With Inhibitor
Length = 550
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 56/135 (41%), Gaps = 2/135 (1%)
Query: 73 LAGLKFAIKDVFDVKGYVTGFGSPDWKRDHHEAERTAVVVTLLLKNGATCIGKTVLDEFA 132
L G+ ++K+ F KG+ + G + +E VVV +L GA T + +
Sbjct: 105 LYGVPVSLKECFSYKGHDSTLGLS--LNEGMPSESDCVVVQVLKLQGAVPFVHTNVPQSM 162
Query: 133 FGITGENKHYGTPVNPQMPSHIPXXXXXXXXXXXXXQLVDFALGTDTIGCVRVPASFCGI 192
N +G +NP S P LGTD G +R P++FCGI
Sbjct: 163 LSFDCSNPLFGQTMNPWKSSKSPGGSSGGEGALIGSGGSPLGLGTDIGGSIRFPSAFCGI 222
Query: 193 LGYRPSHGTVSMIGV 207
G +P+ +S G+
Sbjct: 223 CGLKPTGNRLSKSGL 237
>pdb|1MT5|A Chain A, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|B Chain B, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|C Chain C, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|D Chain D, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|E Chain E, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|F Chain F, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|G Chain G, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|H Chain H, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|I Chain I, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|J Chain J, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|K Chain K, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|L Chain L, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|M Chain M, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|N Chain N, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|O Chain O, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|P Chain P, Crystal Structure Of Fatty Acid Amide Hydrolase
Length = 537
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 56/135 (41%), Gaps = 2/135 (1%)
Query: 73 LAGLKFAIKDVFDVKGYVTGFGSPDWKRDHHEAERTAVVVTLLLKNGATCIGKTVLDEFA 132
L G+ ++K+ F KG+ + G + +E VVV +L GA T + +
Sbjct: 98 LYGVPVSLKECFSYKGHDSTLGLS--LNEGMPSESDCVVVQVLKLQGAVPFVHTNVPQSM 155
Query: 133 FGITGENKHYGTPVNPQMPSHIPXXXXXXXXXXXXXQLVDFALGTDTIGCVRVPASFCGI 192
N +G +NP S P LGTD G +R P++FCGI
Sbjct: 156 LSFDCSNPLFGQTMNPWKSSKSPGGSSGGEGALIGSGGSPLGLGTDIGGSIRFPSAFCGI 215
Query: 193 LGYRPSHGTVSMIGV 207
G +P+ +S G+
Sbjct: 216 CGLKPTGNRLSKSGL 230
>pdb|3QK5|A Chain A, Crystal Structure Of Fatty Acid Amide Hydrolase With Small
Molecule Inhibitor
pdb|3QK5|B Chain B, Crystal Structure Of Fatty Acid Amide Hydrolase With Small
Molecule Inhibitor
pdb|3QJ8|A Chain A, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|3QJ8|B Chain B, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|3QJ9|A Chain A, Crystal Structure Of Fatty Acid Amide Hydrolase With Small
Molecule Inhibitor
pdb|3QJ9|B Chain B, Crystal Structure Of Fatty Acid Amide Hydrolase With Small
Molecule Inhibitor
pdb|3QKV|A Chain A, Crystal Structure Of Fatty Acid Amide Hydrolase With Small
Molecule Compound
pdb|3QKV|B Chain B, Crystal Structure Of Fatty Acid Amide Hydrolase With Small
Molecule Compound
Length = 587
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 56/135 (41%), Gaps = 2/135 (1%)
Query: 73 LAGLKFAIKDVFDVKGYVTGFGSPDWKRDHHEAERTAVVVTLLLKNGATCIGKTVLDEFA 132
L G+ ++K+ F KG+ + G + +E VVV +L GA T + +
Sbjct: 142 LYGVPVSLKECFSYKGHDSTLGLS--LNEGMPSESDCVVVQVLKLQGAVPFVHTNVPQSM 199
Query: 133 FGITGENKHYGTPVNPQMPSHIPXXXXXXXXXXXXXQLVDFALGTDTIGCVRVPASFCGI 192
N +G +NP S P LGTD G +R P++FCGI
Sbjct: 200 LSFDCSNPLFGQTMNPWKSSKSPGGSSGGEGALIGSGGSPLGLGTDIGGSIRFPSAFCGI 259
Query: 193 LGYRPSHGTVSMIGV 207
G +P+ +S G+
Sbjct: 260 CGLKPTGNRLSKSGL 274
>pdb|4DO3|A Chain A, Structure Of Faah With A Non-steroidal Anti-inflammatory
Drug
pdb|4DO3|B Chain B, Structure Of Faah With A Non-steroidal Anti-inflammatory
Drug
Length = 571
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 56/135 (41%), Gaps = 2/135 (1%)
Query: 73 LAGLKFAIKDVFDVKGYVTGFGSPDWKRDHHEAERTAVVVTLLLKNGATCIGKTVLDEFA 132
L G+ ++K+ F KG+ + G + +E VVV +L GA T + +
Sbjct: 124 LYGVPVSLKECFSYKGHDSTLGLS--LNEGMPSESDCVVVQVLKLQGAVPFVHTNVPQSM 181
Query: 133 FGITGENKHYGTPVNPQMPSHIPXXXXXXXXXXXXXQLVDFALGTDTIGCVRVPASFCGI 192
N +G +NP S P LGTD G +R P++FCGI
Sbjct: 182 LSFDCSNPLFGQTMNPWKSSKSPGGSSGGEGALIGSGGSPLGLGTDIGGSIRFPSAFCGI 241
Query: 193 LGYRPSHGTVSMIGV 207
G +P+ +S G+
Sbjct: 242 CGLKPTGNRLSKSGL 256
>pdb|2AVP|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
Length = 70
Score = 41.6 bits (96), Expect = 0.001, Method: Composition-based stats.
Identities = 20/61 (32%), Positives = 36/61 (59%)
Query: 496 GNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKK 555
GNA +K +++A+ YY +A++L+ SA + N AY + G + +A E K + LD +
Sbjct: 10 GNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 69
Query: 556 N 556
+
Sbjct: 70 S 70
Score = 36.6 bits (83), Expect = 0.041, Method: Composition-based stats.
Identities = 20/69 (28%), Positives = 38/69 (55%)
Query: 522 SATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEALQDFK 581
SA + N AY + G + +A E K + LD ++ +A+ G A Y+EA++ ++
Sbjct: 2 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQ 61
Query: 582 HAMVLEPQN 590
A+ L+P++
Sbjct: 62 KALELDPRS 70
>pdb|2L6J|A Chain A, Tah1 Complexed By Meevd
Length = 111
Score = 40.4 bits (93), Expect = 0.003, Method: Composition-based stats.
Identities = 21/59 (35%), Positives = 34/59 (57%)
Query: 490 ELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSK 548
E KE+GN+ FK + +AV+ Y + I + YSN+A A ++LG + QA + C +
Sbjct: 5 EKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQ 63
>pdb|4APO|A Chain A, Aip Tpr Domain In Complex With Human Tomm20 Peptide
pdb|4APO|B Chain B, Aip Tpr Domain In Complex With Human Tomm20 Peptide
Length = 165
Score = 36.6 bits (83), Expect = 0.039, Method: Composition-based stats.
Identities = 17/50 (34%), Positives = 27/50 (54%)
Query: 539 FQQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEP 588
+ + + CS ++ NVKAY +RG A A++ EA DF + L+P
Sbjct: 82 YYEVLDHCSSILNKYDDNVKAYFKRGKAHAAVWNAQEAQADFAKVLELDP 131
>pdb|4AIF|A Chain A, Aip Tpr Domain In Complex With Human Hsp90 Peptide
pdb|4AIF|B Chain B, Aip Tpr Domain In Complex With Human Hsp90 Peptide
Length = 144
Score = 36.6 bits (83), Expect = 0.044, Method: Composition-based stats.
Identities = 17/50 (34%), Positives = 27/50 (54%)
Query: 539 FQQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEP 588
+ + + CS ++ NVKAY +RG A A++ EA DF + L+P
Sbjct: 76 YYEVLDHCSSILNKYDDNVKAYFKRGKAHAAVWNAQEAQADFAKVLELDP 125
>pdb|3VTX|A Chain A, Crystal Structure Of Mama Protein
pdb|3VTX|B Chain B, Crystal Structure Of Mama Protein
pdb|3VTY|A Chain A, Crystal Structure Of Mama
pdb|3VTY|B Chain B, Crystal Structure Of Mama
pdb|3VTY|C Chain C, Crystal Structure Of Mama
pdb|3VTY|D Chain D, Crystal Structure Of Mama
Length = 184
Score = 35.4 bits (80), Expect = 0.094, Method: Composition-based stats.
Identities = 26/85 (30%), Positives = 38/85 (44%)
Query: 496 GNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKK 555
G+A F + A++ AI LN A Y Y +G +A E KTIS+
Sbjct: 80 GSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPG 139
Query: 556 NVKAYLRRGTAREALFCYNEALQDF 580
++AY G A E +EA++ F
Sbjct: 140 FIRAYQSIGLAYEGKGLRDEAVKYF 164
>pdb|2FBN|A Chain A, Plasmodium Falciparum Putative Fk506-Binding Protein
Pfl2275c, C-Terminal Tpr-Containing Domain
pdb|2FBN|B Chain B, Plasmodium Falciparum Putative Fk506-Binding Protein
Pfl2275c, C-Terminal Tpr-Containing Domain
Length = 198
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 48/115 (41%), Gaps = 16/115 (13%)
Query: 492 LKEKGNAAFKGKQWNKAVNYYSEAI----------------KLNGTSATYYSNRAAAYLE 535
+KE+GN FK + N+A+ Y EA+ K + N A Y +
Sbjct: 41 IKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNK 100
Query: 536 LGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQN 590
+ +A + SK + +DK NVKA + G A EA ++ A L P N
Sbjct: 101 NKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNN 155
>pdb|1W3B|A Chain A, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase
Reveals Structural Similarities To Importin Alpha.
pdb|1W3B|B Chain B, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase
Reveals Structural Similarities To Importin Alpha
Length = 388
Score = 34.3 bits (77), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 39/90 (43%), Gaps = 7/90 (7%)
Query: 496 GNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKK 555
GN + + +++AV Y A+ L+ A + N A Y E G A + + I L
Sbjct: 210 GNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPH 269
Query: 556 NVKAYL-------RRGTAREALFCYNEALQ 578
AY +G+ EA CYN AL+
Sbjct: 270 FPDAYCNLANALKEKGSVAEAEDCYNTALR 299
Score = 30.0 bits (66), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 39/89 (43%)
Query: 500 FKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKA 559
F+ ++ +++ ++ + AIK N A YSN Y E G Q+A E + L +
Sbjct: 44 FQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDG 103
Query: 560 YLRRGTAREALFCYNEALQDFKHAMVLEP 588
Y+ A A A+Q + A+ P
Sbjct: 104 YINLAAALVAAGDMEGAVQAYVSALQYNP 132
>pdb|3BX6|A Chain A, Crystal Structure Of Human Alpha 1 Acid Glycoprotein
Length = 192
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 29/129 (22%), Positives = 56/129 (43%), Gaps = 7/129 (5%)
Query: 469 QVNIASNLVPLPDTNGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSN 528
Q+ + +NLVP+P TN ++D +AF+ +++NK+V ++ T + N
Sbjct: 1 QIPLCANLVPVPITNATLDQITGKWFYIASAFRNEEYNKSVQ------EIQATFFYFTPN 54
Query: 529 RAAAYLELGCFQQAEEDC-SKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLE 587
+ + L +Q ++ C T L+ + + R + F + L+D K M+
Sbjct: 55 KTEDTIFLREYQTRQDQCIYNTTYLNVQRENGTISRYVGGQEHFAHLLILRDTKTYMLAF 114
Query: 588 PQNKAANLA 596
N N
Sbjct: 115 DVNDEKNWG 123
>pdb|3A2B|A Chain A, Crystal Structure Of Serine Palmitoyltransferase From
Sphingobacterium Multivorum With Substrate L-Serine
Length = 398
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 63/127 (49%), Gaps = 15/127 (11%)
Query: 270 SKAIESLSGYQNPEHMNVGQYIASNVPSLKGLRAQSTSPENGTATLKALSSVMLSLQRYE 329
SK++ SL G+ + +V ++ N S+ + + S +P + +TLKAL + + E
Sbjct: 242 SKSLASLGGFVAGD-ADVIDFLKHNARSV--MFSASMTPASVASTLKALEII-----QNE 293
Query: 330 FKTIYEEWVKS--AKPRLGYNVFERVLEAINTTQDNIKILYKVRNEMRAALQRLLKDDKI 387
+ I + W + AK +L + F+ + T+ I ++ NE + ++L+DD +
Sbjct: 294 PEHIEKLWKNTDYAKAQLLDHGFD-----LGATESPILPIFIRSNEKTFWVTKMLQDDGV 348
Query: 388 LVIPTVS 394
V P VS
Sbjct: 349 FVNPVVS 355
>pdb|3APU|A Chain A, Crystal Structure Of The A Variant Of Human Alpha1-Acid
Glycoprotein
pdb|3APU|B Chain B, Crystal Structure Of The A Variant Of Human Alpha1-Acid
Glycoprotein
pdb|3APV|A Chain A, Crystal Structure Of The A Variant Of Human Alpha1-Acid
Glycoprotein And Amitriptyline Complex
pdb|3APV|B Chain B, Crystal Structure Of The A Variant Of Human Alpha1-Acid
Glycoprotein And Amitriptyline Complex
pdb|3APW|A Chain A, Crystal Structure Of The A Variant Of Human Alpha1-Acid
Glycoprotein And Disopyramide Complex
pdb|3APW|B Chain B, Crystal Structure Of The A Variant Of Human Alpha1-Acid
Glycoprotein And Disopyramide Complex
pdb|3APX|A Chain A, Crystal Structure Of The A Variant Of Human Alpha1-Acid
Glycoprotein And Chlorpromazine Complex
Length = 190
Score = 30.0 bits (66), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 26/41 (63%)
Query: 469 QVNIASNLVPLPDTNGSIDASELLKEKGNAAFKGKQWNKAV 509
Q+ + +NLVP+P TN ++D +AF+ +++NK+V
Sbjct: 2 QIPLCANLVPVPITNATLDRITGKWFYIASAFRNEEYNKSV 42
>pdb|1HH8|A Chain A, The Active N-Terminal Region Of P67phox: Structure At 1.8
Angstrom Resolution And Biochemical Characterizations Of
The A128v Mutant Implicated In Chronic Granulomatous
Disease
Length = 213
Score = 30.0 bits (66), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 45/94 (47%), Gaps = 3/94 (3%)
Query: 492 LKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTIS 551
L +G A K W A++ +S A++ + + N Y L +AE+ +++I+
Sbjct: 9 LWNEGVLAADKKDWKGALDAFS-AVQDPHSRICF--NIGCMYTILKNMTEAEKAFTRSIN 65
Query: 552 LDKKNVKAYLRRGTAREALFCYNEALQDFKHAMV 585
DK AY +RG Y+ A++D K A++
Sbjct: 66 RDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALI 99
>pdb|1WM5|A Chain A, Crystal Structure Of The N-Terminal Tpr Domain (1-203) Of
P67phox
Length = 208
Score = 29.6 bits (65), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 48/100 (48%), Gaps = 4/100 (4%)
Query: 486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEED 545
++A L E G A K W A++ +S A++ + + N Y L +AE+
Sbjct: 9 VEAISLWNE-GVLAADKKDWKGALDAFS-AVQDPHSRICF--NIGCMYTILKNMTEAEKA 64
Query: 546 CSKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMV 585
+++I+ DK AY +RG Y+ A++D K A++
Sbjct: 65 FTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALI 104
>pdb|3RO3|A Chain A, Crystal Structure Of LgnMINSCUTEABLE COMPLEX
Length = 164
Score = 29.6 bits (65), Expect = 5.6, Method: Composition-based stats.
Identities = 22/64 (34%), Positives = 32/64 (50%), Gaps = 11/64 (17%)
Query: 526 YSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYN-----EALQDF 580
YSN AY+ LG F+ A E KT+ L ++ + A EA CY+ LQD+
Sbjct: 52 YSNLGNAYIFLGEFETASEYYKKTLLLARQ------LKDRAVEAQSCYSLGNTYTLLQDY 105
Query: 581 KHAM 584
+ A+
Sbjct: 106 EKAI 109
>pdb|1E96|B Chain B, Structure Of The RacP67PHOX COMPLEX
Length = 203
Score = 29.6 bits (65), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 48/100 (48%), Gaps = 4/100 (4%)
Query: 486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEED 545
++A L E G A K W A++ +S A++ + + N Y L +AE+
Sbjct: 4 VEAISLWNE-GVLAADKKDWKGALDAFS-AVQDPHSRICF--NIGCMYTILKNMTEAEKA 59
Query: 546 CSKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMV 585
+++I+ DK AY +RG Y+ A++D K A++
Sbjct: 60 FTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALI 99
>pdb|3KQ0|A Chain A, Crystal Structure Of Human Alpha1-Acid Glycoprotein
Length = 192
Score = 28.9 bits (63), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 28/128 (21%), Positives = 55/128 (42%), Gaps = 7/128 (5%)
Query: 470 VNIASNLVPLPDTNGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNR 529
+ + +NLVP+P TN ++D +AF+ +++NK+V ++ T + N+
Sbjct: 2 IPLCANLVPVPITNATLDQITGKWFYIASAFRNEEYNKSVQ------EIQATFFYFTPNK 55
Query: 530 AAAYLELGCFQQAEEDC-SKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEP 588
+ L +Q ++ C T L+ + + R + F + L+D K M+
Sbjct: 56 TEDTIFLREYQTRQDQCIYNTTYLNVQRENGTISRYVGGQEHFAHLLILRDTKTYMLAFD 115
Query: 589 QNKAANLA 596
N N
Sbjct: 116 VNDEKNWG 123
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.387
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,993,911
Number of Sequences: 62578
Number of extensions: 610674
Number of successful extensions: 1630
Number of sequences better than 100.0: 87
Number of HSP's better than 100.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 1460
Number of HSP's gapped (non-prelim): 134
length of query: 605
length of database: 14,973,337
effective HSP length: 104
effective length of query: 501
effective length of database: 8,465,225
effective search space: 4241077725
effective search space used: 4241077725
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)