Query 007401
Match_columns 605
No_of_seqs 540 out of 3311
Neff 9.4
Searched_HMMs 46136
Date Thu Mar 28 23:05:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007401.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007401hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0154 GatA Asp-tRNAAsn/Glu-t 100.0 8E-90 1.7E-94 722.8 35.3 422 21-467 8-468 (475)
2 PLN02722 indole-3-acetamide am 100.0 9E-89 2E-93 709.6 38.8 417 44-464 2-420 (422)
3 TIGR02715 amido_AtzE amidohydr 100.0 1.9E-88 4.1E-93 718.7 34.2 407 27-465 12-447 (452)
4 PRK09201 amidase; Provisional 100.0 2.7E-88 5.9E-93 719.3 34.4 406 27-464 19-453 (465)
5 PRK06102 hypothetical protein; 100.0 2.1E-87 4.6E-92 709.9 34.9 413 27-466 18-449 (452)
6 PRK06169 putative amidase; Pro 100.0 2.5E-87 5.4E-92 712.9 33.7 416 21-465 8-455 (466)
7 PRK07487 amidase; Provisional 100.0 3.4E-87 7.3E-92 711.6 34.4 421 17-466 5-457 (469)
8 PRK07056 amidase; Provisional 100.0 3.4E-87 7.3E-92 708.8 34.2 413 27-466 18-451 (454)
9 PRK05962 amidase; Validated 100.0 2E-86 4.3E-91 696.9 34.1 406 36-468 2-423 (424)
10 PRK07486 amidase; Provisional 100.0 2.5E-86 5.5E-91 708.5 34.0 421 19-465 11-470 (484)
11 PRK07042 amidase; Provisional 100.0 3.2E-86 7E-91 704.0 33.2 414 21-466 8-452 (464)
12 PRK06170 amidase; Provisional 100.0 4.4E-86 9.6E-91 708.5 33.5 421 16-466 8-482 (490)
13 PRK12470 amidase; Provisional 100.0 3.9E-86 8.4E-91 701.3 31.4 419 17-465 6-451 (462)
14 TIGR00132 gatA glutamyl-tRNA(G 100.0 4.2E-86 9.2E-91 703.9 30.7 416 27-464 8-459 (460)
15 PRK08310 amidase; Provisional 100.0 5.4E-85 1.2E-89 679.7 38.2 390 46-465 4-393 (395)
16 PRK07235 amidase; Provisional 100.0 8E-85 1.7E-89 694.7 40.1 417 27-464 36-499 (502)
17 PRK07488 indole acetimide hydr 100.0 2.4E-85 5.3E-90 698.7 35.4 419 16-465 7-464 (472)
18 PRK00012 gatA aspartyl/glutamy 100.0 1.1E-85 2.4E-90 700.5 31.2 414 27-463 4-459 (459)
19 PRK06529 amidase; Provisional 100.0 8.5E-85 1.8E-89 696.4 34.5 410 27-464 16-476 (482)
20 PRK06061 amidase; Provisional 100.0 7.2E-85 1.6E-89 695.4 33.5 408 27-465 30-467 (483)
21 PRK07869 amidase; Provisional 100.0 1E-84 2.2E-89 694.0 33.0 421 16-465 11-461 (468)
22 PRK08186 allophanate hydrolase 100.0 4.7E-84 1E-88 698.8 33.5 410 27-466 19-448 (600)
23 PRK08137 amidase; Provisional 100.0 1.3E-83 2.9E-88 689.7 33.2 407 21-465 7-482 (497)
24 PRK07139 amidase; Provisional 100.0 2.2E-80 4.8E-85 652.3 36.3 397 36-467 9-434 (439)
25 TIGR02713 allophanate_hyd allo 100.0 1.4E-80 3.1E-85 664.4 34.0 387 50-465 2-410 (561)
26 PF01425 Amidase: Amidase; In 100.0 6.6E-82 1.4E-86 676.8 15.9 397 33-456 1-441 (441)
27 PRK06828 amidase; Provisional 100.0 1.5E-79 3.3E-84 650.5 31.0 396 27-465 25-481 (491)
28 PRK11910 amidase; Provisional 100.0 4.1E-78 8.9E-83 638.7 31.4 390 21-466 166-606 (615)
29 PRK06707 amidase; Provisional 100.0 2.6E-76 5.6E-81 628.4 31.2 382 27-465 83-527 (536)
30 PRK06565 amidase; Validated 100.0 1.2E-73 2.6E-78 600.5 26.8 429 27-467 19-555 (566)
31 KOG1211 Amidases [Translation, 100.0 1.2E-68 2.6E-73 544.9 22.6 415 27-464 30-493 (506)
32 KOG1212 Amidases [Translation, 100.0 2.1E-64 4.5E-69 518.5 19.9 425 17-468 52-553 (560)
33 KOG0553 TPR repeat-containing 99.7 8.1E-17 1.8E-21 152.9 13.7 120 485-604 77-196 (304)
34 PRK15359 type III secretion sy 99.6 1.9E-14 4E-19 128.5 15.6 113 492-604 27-139 (144)
35 PRK15363 pathogenicity island 99.5 3.6E-13 7.8E-18 118.1 16.0 108 486-593 32-139 (157)
36 KOG0548 Molecular co-chaperone 99.5 1E-12 2.2E-17 133.6 16.9 119 485-603 354-472 (539)
37 PLN03088 SGT1, suppressor of 99.5 1.2E-12 2.5E-17 135.1 16.9 115 490-604 3-117 (356)
38 TIGR02552 LcrH_SycD type III s 99.5 2E-12 4.4E-17 114.4 16.0 117 485-601 13-129 (135)
39 KOG4626 O-linked N-acetylgluco 99.5 3.6E-13 7.7E-18 138.0 11.1 121 485-605 248-368 (966)
40 PRK10370 formate-dependent nit 99.4 2.7E-12 5.9E-17 120.8 15.3 114 485-598 69-185 (198)
41 KOG4626 O-linked N-acetylgluco 99.4 2.1E-12 4.5E-17 132.5 12.7 120 485-604 350-469 (966)
42 PRK11189 lipoprotein NlpI; Pro 99.4 1.3E-11 2.9E-16 124.4 17.3 107 486-592 61-167 (296)
43 KOG1126 DNA-binding cell divis 99.4 1.2E-12 2.5E-17 136.4 7.4 123 483-605 415-537 (638)
44 KOG0543 FKBP-type peptidyl-pro 99.3 1.5E-11 3.4E-16 122.0 15.0 117 487-603 206-337 (397)
45 TIGR00990 3a0801s09 mitochondr 99.3 5E-11 1.1E-15 133.1 18.1 119 486-604 362-480 (615)
46 TIGR00990 3a0801s09 mitochondr 99.3 6.3E-11 1.4E-15 132.3 17.5 121 485-605 327-447 (615)
47 COG3063 PilF Tfp pilus assembl 99.3 9.5E-11 2.1E-15 107.5 14.8 124 481-604 61-186 (250)
48 KOG4648 Uncharacterized conser 99.3 1.9E-11 4.2E-16 117.4 9.8 110 492-601 100-209 (536)
49 TIGR02795 tol_pal_ybgF tol-pal 99.3 1.4E-10 2.9E-15 99.9 14.3 109 489-597 2-116 (119)
50 KOG4234 TPR repeat-containing 99.2 1.3E-10 2.8E-15 103.8 13.2 115 486-600 92-211 (271)
51 KOG1155 Anaphase-promoting com 99.2 1.6E-10 3.4E-15 115.5 15.2 153 438-605 328-480 (559)
52 KOG1126 DNA-binding cell divis 99.2 8.1E-11 1.8E-15 122.8 13.6 123 483-605 483-605 (638)
53 COG4235 Cytochrome c biogenesi 99.2 3.2E-10 6.9E-15 109.2 16.5 133 451-599 134-269 (287)
54 PRK12370 invasion protein regu 99.2 2.3E-10 5E-15 125.7 16.5 121 485-605 334-455 (553)
55 PRK15331 chaperone protein Sic 99.2 4.6E-10 1E-14 99.0 14.1 115 485-600 33-147 (165)
56 PRK12370 invasion protein regu 99.2 2E-10 4.4E-15 126.1 14.9 115 485-599 291-414 (553)
57 KOG0547 Translocase of outer m 99.2 1.7E-10 3.8E-15 115.9 12.2 116 487-602 113-229 (606)
58 PRK15179 Vi polysaccharide bio 99.2 3.6E-10 7.8E-15 124.8 16.0 120 486-605 83-202 (694)
59 KOG0548 Molecular co-chaperone 99.2 1.5E-10 3.2E-15 118.1 11.7 112 490-601 3-114 (539)
60 PRK02603 photosystem I assembl 99.2 8.8E-10 1.9E-14 101.9 15.7 110 482-591 28-154 (172)
61 PRK09782 bacteriophage N4 rece 99.2 4.1E-10 8.9E-15 129.1 16.2 114 489-602 609-722 (987)
62 PRK10370 formate-dependent nit 99.2 5.7E-10 1.2E-14 105.1 14.3 104 502-605 52-158 (198)
63 PF13414 TPR_11: TPR repeat; P 99.2 1.3E-10 2.8E-15 89.6 8.2 66 523-588 3-69 (69)
64 PLN02789 farnesyltranstransfer 99.2 4.7E-10 1E-14 113.1 14.5 121 483-603 65-188 (320)
65 KOG0550 Molecular chaperone (D 99.2 1.9E-10 4.2E-15 113.5 11.1 111 479-589 239-353 (486)
66 PF13414 TPR_11: TPR repeat; P 99.2 1.3E-10 2.8E-15 89.7 7.7 67 488-554 2-69 (69)
67 cd00189 TPR Tetratricopeptide 99.1 4.8E-10 1E-14 91.2 11.6 99 491-589 2-100 (100)
68 PRK15359 type III secretion sy 99.1 3.4E-10 7.3E-15 101.1 11.2 94 509-605 13-106 (144)
69 PRK11189 lipoprotein NlpI; Pro 99.1 1.2E-09 2.5E-14 110.3 16.4 114 486-599 95-279 (296)
70 COG5010 TadD Flp pilus assembl 99.1 1.1E-09 2.4E-14 102.7 14.8 119 486-604 97-215 (257)
71 TIGR02521 type_IV_pilW type IV 99.1 2E-09 4.3E-14 103.8 17.0 121 485-605 61-183 (234)
72 PF13429 TPR_15: Tetratricopep 99.1 1.1E-10 2.5E-15 117.0 8.3 120 486-605 143-262 (280)
73 KOG0547 Translocase of outer m 99.1 7.6E-10 1.6E-14 111.4 13.3 118 487-604 324-441 (606)
74 TIGR02521 type_IV_pilW type IV 99.1 2.3E-09 5.1E-14 103.3 16.6 119 486-604 96-216 (234)
75 KOG1155 Anaphase-promoting com 99.1 6.6E-10 1.4E-14 111.2 12.2 117 489-605 330-446 (559)
76 PRK09782 bacteriophage N4 rece 99.1 1.8E-09 3.8E-14 124.0 17.2 116 489-605 576-691 (987)
77 KOG1125 TPR repeat-containing 99.1 8.1E-10 1.8E-14 113.7 12.0 103 487-589 428-530 (579)
78 PRK15174 Vi polysaccharide exp 99.1 2.7E-09 5.9E-14 119.3 16.5 118 486-603 243-364 (656)
79 PF12895 Apc3: Anaphase-promot 99.1 4.9E-10 1.1E-14 90.1 7.6 82 501-583 1-84 (84)
80 TIGR03302 OM_YfiO outer membra 99.0 4.3E-09 9.2E-14 102.7 14.6 112 483-594 27-152 (235)
81 CHL00033 ycf3 photosystem I as 99.0 1.1E-08 2.4E-13 94.1 16.5 107 485-591 31-154 (168)
82 TIGR03302 OM_YfiO outer membra 99.0 5.2E-09 1.1E-13 102.1 15.1 122 484-605 65-217 (235)
83 PRK10803 tol-pal system protei 99.0 8.2E-09 1.8E-13 101.1 16.3 112 489-600 142-260 (263)
84 COG3063 PilF Tfp pilus assembl 99.0 3.5E-09 7.5E-14 97.4 12.4 122 484-605 98-221 (250)
85 KOG2076 RNA polymerase III tra 99.0 7.7E-09 1.7E-13 111.5 16.4 131 453-588 140-272 (895)
86 TIGR02552 LcrH_SycD type III s 99.0 4.6E-09 1E-13 92.8 11.8 96 510-605 4-99 (135)
87 COG4783 Putative Zn-dependent 99.0 8.7E-09 1.9E-13 104.6 15.0 117 489-605 306-422 (484)
88 PRK15174 Vi polysaccharide exp 99.0 8.7E-09 1.9E-13 115.3 16.7 115 491-605 214-332 (656)
89 PF13432 TPR_16: Tetratricopep 99.0 1.8E-09 3.9E-14 82.1 7.7 62 495-556 3-64 (65)
90 KOG0624 dsRNA-activated protei 99.0 3.9E-09 8.5E-14 101.8 11.4 109 485-593 34-142 (504)
91 PF13432 TPR_16: Tetratricopep 99.0 2.6E-09 5.6E-14 81.2 8.1 65 527-591 1-65 (65)
92 PRK15179 Vi polysaccharide bio 99.0 1.2E-08 2.6E-13 112.8 16.0 109 485-593 116-224 (694)
93 PRK11447 cellulose synthase su 98.9 1.2E-08 2.7E-13 121.7 16.9 117 485-601 299-429 (1157)
94 PRK11788 tetratricopeptide rep 98.9 3.8E-08 8.2E-13 103.7 18.3 100 491-590 182-282 (389)
95 PRK15363 pathogenicity island 98.9 9E-09 1.9E-13 90.6 11.0 91 515-605 26-117 (157)
96 PRK10049 pgaA outer membrane p 98.9 2E-08 4.4E-13 114.6 16.9 117 486-603 46-162 (765)
97 KOG4642 Chaperone-dependent E3 98.9 3.2E-09 6.9E-14 97.7 8.0 101 487-587 8-108 (284)
98 PF13512 TPR_18: Tetratricopep 98.9 3.1E-08 6.7E-13 85.6 13.6 109 489-597 10-139 (142)
99 PLN02789 farnesyltranstransfer 98.9 3.3E-08 7.3E-13 99.8 15.7 119 487-605 35-156 (320)
100 PRK11447 cellulose synthase su 98.9 3.1E-08 6.7E-13 118.3 17.9 112 493-604 355-508 (1157)
101 KOG0551 Hsp90 co-chaperone CNS 98.9 1E-08 2.2E-13 98.8 10.9 108 486-593 78-189 (390)
102 COG2956 Predicted N-acetylgluc 98.9 5E-08 1.1E-12 93.8 15.5 141 460-600 151-292 (389)
103 TIGR02917 PEP_TPR_lipo putativ 98.9 5.6E-08 1.2E-12 113.4 18.8 119 485-603 121-239 (899)
104 KOG1125 TPR repeat-containing 98.9 1.1E-08 2.4E-13 105.4 11.0 82 523-604 430-511 (579)
105 PRK11788 tetratricopeptide rep 98.9 9.3E-08 2E-12 100.7 18.0 120 485-604 137-262 (389)
106 TIGR02917 PEP_TPR_lipo putativ 98.9 3.7E-08 8.1E-13 114.9 16.3 119 486-605 767-885 (899)
107 COG4783 Putative Zn-dependent 98.8 7.2E-08 1.6E-12 98.0 15.2 121 484-604 335-455 (484)
108 KOG0376 Serine-threonine phosp 98.8 6.5E-09 1.4E-13 105.5 6.9 114 489-602 4-117 (476)
109 COG1729 Uncharacterized protei 98.8 1.3E-07 2.8E-12 90.3 15.2 110 492-601 144-259 (262)
110 KOG0553 TPR repeat-containing 98.8 2.2E-08 4.8E-13 95.9 9.7 90 485-574 111-200 (304)
111 KOG0545 Aryl-hydrocarbon recep 98.8 6.9E-08 1.5E-12 89.3 12.4 107 487-593 176-300 (329)
112 KOG4555 TPR repeat-containing 98.8 1.7E-07 3.7E-12 78.2 13.5 104 486-589 40-147 (175)
113 KOG4162 Predicted calmodulin-b 98.8 4.3E-08 9.2E-13 104.2 12.2 107 486-592 681-789 (799)
114 KOG2076 RNA polymerase III tra 98.8 1.3E-07 2.7E-12 102.3 15.8 119 487-605 137-255 (895)
115 PRK10049 pgaA outer membrane p 98.8 2.1E-07 4.5E-12 106.4 18.7 112 488-599 358-469 (765)
116 COG5010 TadD Flp pilus assembl 98.8 1E-07 2.2E-12 89.8 13.2 118 486-604 64-181 (257)
117 PF13371 TPR_9: Tetratricopept 98.7 5.2E-08 1.1E-12 75.9 8.7 68 531-598 3-70 (73)
118 KOG1173 Anaphase-promoting com 98.7 7E-08 1.5E-12 99.3 11.3 118 485-602 410-534 (611)
119 PF14559 TPR_19: Tetratricopep 98.7 3.8E-08 8.3E-13 75.4 7.3 66 500-565 2-67 (68)
120 KOG3060 Uncharacterized conser 98.7 2.7E-07 5.9E-12 86.1 13.7 131 466-601 102-235 (289)
121 PF12688 TPR_5: Tetratrico pep 98.7 3.3E-07 7.2E-12 78.1 13.1 96 490-585 2-103 (120)
122 PF13371 TPR_9: Tetratricopept 98.7 9E-08 1.9E-12 74.5 8.7 70 496-565 2-71 (73)
123 KOG1129 TPR repeat-containing 98.7 2E-08 4.4E-13 96.4 5.8 120 485-604 320-442 (478)
124 KOG2003 TPR repeat-containing 98.7 5E-08 1.1E-12 97.3 8.6 117 489-605 490-606 (840)
125 PLN03088 SGT1, suppressor of 98.7 2.7E-07 6E-12 95.3 13.2 87 485-571 32-118 (356)
126 PF14559 TPR_19: Tetratricopep 98.6 7.9E-08 1.7E-12 73.7 6.8 68 533-600 1-68 (68)
127 KOG0543 FKBP-type peptidyl-pro 98.6 2.7E-07 5.9E-12 92.2 12.1 100 489-588 257-357 (397)
128 PRK10866 outer membrane biogen 98.6 8.7E-07 1.9E-11 86.2 15.4 109 488-596 31-163 (243)
129 PF13429 TPR_15: Tetratricopep 98.6 1.5E-07 3.3E-12 94.3 10.0 117 489-605 110-228 (280)
130 COG2956 Predicted N-acetylgluc 98.6 7.8E-07 1.7E-11 85.8 14.0 116 490-605 142-263 (389)
131 PLN03098 LPA1 LOW PSII ACCUMUL 98.6 4.3E-07 9.2E-12 92.9 12.9 72 482-553 68-142 (453)
132 PF09976 TPR_21: Tetratricopep 98.6 6.5E-07 1.4E-11 80.1 12.8 98 486-584 45-145 (145)
133 PRK14574 hmsH outer membrane p 98.6 6.4E-07 1.4E-11 101.2 15.6 98 494-591 73-170 (822)
134 KOG2002 TPR-containing nuclear 98.6 4E-07 8.7E-12 99.2 13.2 119 485-603 303-426 (1018)
135 PLN03098 LPA1 LOW PSII ACCUMUL 98.6 1.9E-07 4E-12 95.5 10.0 70 518-587 70-142 (453)
136 PF06552 TOM20_plant: Plant sp 98.6 5.4E-07 1.2E-11 80.4 11.3 96 505-600 7-123 (186)
137 PF13525 YfiO: Outer membrane 98.6 1E-06 2.2E-11 83.6 13.8 109 488-596 4-129 (203)
138 PRK14574 hmsH outer membrane p 98.6 1.6E-06 3.5E-11 97.9 17.0 117 488-605 101-217 (822)
139 KOG0550 Molecular chaperone (D 98.5 2.6E-07 5.5E-12 91.8 8.7 119 486-604 200-334 (486)
140 CHL00033 ycf3 photosystem I as 98.5 5.8E-07 1.3E-11 82.7 10.8 108 496-603 6-118 (168)
141 cd05804 StaR_like StaR_like; a 98.5 7.8E-07 1.7E-11 92.5 13.0 104 485-588 110-217 (355)
142 COG4785 NlpI Lipoprotein NlpI, 98.5 5.2E-07 1.1E-11 82.1 9.9 107 486-592 62-168 (297)
143 PRK10153 DNA-binding transcrip 98.5 2.6E-06 5.7E-11 91.7 17.1 104 488-592 338-488 (517)
144 PRK11906 transcriptional regul 98.5 6.3E-06 1.4E-10 84.6 17.5 112 491-602 257-383 (458)
145 PRK11906 transcriptional regul 98.5 2.1E-06 4.5E-11 88.1 13.9 110 484-593 290-408 (458)
146 KOG1128 Uncharacterized conser 98.5 3.5E-07 7.7E-12 96.9 8.4 111 489-599 485-595 (777)
147 KOG3060 Uncharacterized conser 98.5 6.8E-06 1.5E-10 76.9 15.7 112 492-603 89-200 (289)
148 KOG4162 Predicted calmodulin-b 98.5 2.1E-06 4.6E-11 91.6 13.7 118 488-605 649-768 (799)
149 KOG2002 TPR-containing nuclear 98.5 1.5E-06 3.2E-11 94.9 12.5 119 485-603 266-388 (1018)
150 COG4235 Cytochrome c biogenesi 98.4 3.2E-06 7E-11 81.8 13.3 101 504-604 137-240 (287)
151 KOG1173 Anaphase-promoting com 98.4 1E-06 2.2E-11 90.9 10.1 117 485-601 308-424 (611)
152 TIGR00540 hemY_coli hemY prote 98.4 2.7E-06 6E-11 90.0 13.9 118 487-605 261-384 (409)
153 cd00189 TPR Tetratricopeptide 98.4 2.2E-06 4.8E-11 69.1 10.1 80 525-604 2-81 (100)
154 PRK14720 transcript cleavage f 98.4 3.1E-06 6.8E-11 94.8 14.0 121 481-603 23-162 (906)
155 PRK02603 photosystem I assembl 98.4 2.1E-06 4.6E-11 79.2 10.6 86 519-604 31-119 (172)
156 KOG1156 N-terminal acetyltrans 98.4 2.2E-06 4.9E-11 89.7 11.7 116 485-600 37-152 (700)
157 KOG0624 dsRNA-activated protei 98.4 9.4E-06 2E-10 78.9 14.6 113 488-600 154-266 (504)
158 PF09976 TPR_21: Tetratricopep 98.4 1.7E-05 3.8E-10 70.8 15.6 118 487-605 9-132 (145)
159 PF13424 TPR_12: Tetratricopep 98.4 1.1E-06 2.4E-11 69.3 6.9 66 487-552 3-75 (78)
160 cd05804 StaR_like StaR_like; a 98.3 7.6E-06 1.6E-10 85.0 14.2 117 489-605 43-200 (355)
161 TIGR02795 tol_pal_ybgF tol-pal 98.3 6.4E-06 1.4E-10 70.5 11.4 82 523-604 2-89 (119)
162 TIGR00540 hemY_coli hemY prote 98.3 1.9E-05 4.1E-10 83.6 16.9 107 486-592 115-222 (409)
163 PF09295 ChAPs: ChAPs (Chs5p-A 98.3 5.5E-06 1.2E-10 85.5 12.0 95 491-585 202-296 (395)
164 COG4700 Uncharacterized protei 98.3 3.9E-05 8.4E-10 68.5 15.3 113 489-602 89-204 (251)
165 PRK10153 DNA-binding transcrip 98.3 7.5E-06 1.6E-10 88.2 13.3 72 486-558 417-488 (517)
166 PF13424 TPR_12: Tetratricopep 98.3 9.9E-07 2.1E-11 69.6 4.6 68 520-587 2-76 (78)
167 KOG1129 TPR repeat-containing 98.3 6E-06 1.3E-10 79.8 10.6 120 481-600 282-404 (478)
168 KOG2003 TPR repeat-containing 98.3 1.3E-05 2.9E-10 80.4 13.0 102 489-590 524-625 (840)
169 KOG1840 Kinesin light chain [C 98.2 1.5E-05 3.2E-10 84.6 13.4 105 483-587 277-397 (508)
170 PF09295 ChAPs: ChAPs (Chs5p-A 98.2 3.5E-05 7.5E-10 79.6 15.1 105 498-605 178-282 (395)
171 PRK10747 putative protoheme IX 98.2 2.5E-05 5.4E-10 82.4 14.3 101 488-591 262-362 (398)
172 PF13525 YfiO: Outer membrane 98.2 3.6E-05 7.9E-10 73.0 13.9 121 485-605 38-192 (203)
173 PRK10747 putative protoheme IX 98.2 6.3E-05 1.4E-09 79.3 16.6 107 489-595 118-225 (398)
174 KOG1156 N-terminal acetyltrans 98.2 1.1E-05 2.5E-10 84.6 10.6 113 491-603 9-121 (700)
175 KOG0495 HAT repeat protein [RN 98.2 2.5E-05 5.3E-10 82.1 12.9 117 489-605 651-767 (913)
176 PRK15331 chaperone protein Sic 98.1 1.1E-05 2.4E-10 71.5 8.5 90 516-605 30-119 (165)
177 KOG1840 Kinesin light chain [C 98.1 1.6E-05 3.4E-10 84.4 11.2 104 484-587 194-313 (508)
178 PF12569 NARP1: NMDA receptor- 98.1 0.00018 3.9E-09 77.3 18.4 49 485-533 34-82 (517)
179 PF12895 Apc3: Anaphase-promot 98.1 8.2E-06 1.8E-10 65.4 6.1 61 488-549 24-84 (84)
180 PRK10866 outer membrane biogen 98.1 0.00023 5.1E-09 69.3 17.2 153 451-605 31-226 (243)
181 COG4105 ComL DNA uptake lipopr 98.1 0.00011 2.4E-09 69.8 14.3 110 487-596 32-155 (254)
182 PRK14720 transcript cleavage f 98.0 2.4E-05 5.1E-10 87.9 10.9 100 485-587 61-179 (906)
183 KOG1128 Uncharacterized conser 98.0 1.6E-05 3.4E-10 84.7 8.2 103 485-587 515-617 (777)
184 KOG1308 Hsp70-interacting prot 98.0 3.6E-06 7.7E-11 82.1 2.9 98 491-588 116-213 (377)
185 KOG1174 Anaphase-promoting com 98.0 4.1E-05 9E-10 76.3 10.0 81 483-563 328-408 (564)
186 PF13431 TPR_17: Tetratricopep 98.0 6.9E-06 1.5E-10 52.9 3.1 32 546-577 2-33 (34)
187 PF04733 Coatomer_E: Coatomer 98.0 6.5E-05 1.4E-09 75.1 11.6 109 490-598 166-277 (290)
188 PF12688 TPR_5: Tetratrico pep 98.0 0.0001 2.3E-09 62.8 11.2 81 524-604 2-88 (120)
189 KOG4234 TPR repeat-containing 98.0 4.6E-05 9.9E-10 68.8 9.2 91 486-576 131-221 (271)
190 PF13428 TPR_14: Tetratricopep 98.0 1.7E-05 3.8E-10 54.7 5.1 40 525-564 3-42 (44)
191 PF12569 NARP1: NMDA receptor- 98.0 0.00023 5E-09 76.4 16.2 99 489-587 194-292 (517)
192 KOG1127 TPR repeat-containing 97.9 2.5E-05 5.5E-10 85.5 8.5 118 485-602 488-641 (1238)
193 KOG1174 Anaphase-promoting com 97.9 7.9E-05 1.7E-09 74.4 10.6 111 488-598 299-409 (564)
194 KOG1127 TPR repeat-containing 97.9 3.7E-05 8E-10 84.3 8.8 115 489-603 562-676 (1238)
195 PRK10803 tol-pal system protei 97.9 0.00015 3.3E-09 71.2 12.5 108 451-560 141-254 (263)
196 PF04733 Coatomer_E: Coatomer 97.9 0.00014 2.9E-09 72.8 11.8 117 489-605 131-249 (290)
197 KOG0495 HAT repeat protein [RN 97.8 0.00018 3.8E-09 75.9 12.4 117 489-605 584-733 (913)
198 PF13428 TPR_14: Tetratricopep 97.8 5.5E-05 1.2E-09 52.1 5.3 43 557-599 1-43 (44)
199 KOG4555 TPR repeat-containing 97.8 0.00032 7E-09 59.0 10.6 80 526-605 46-129 (175)
200 PF00515 TPR_1: Tetratricopept 97.8 4.4E-05 9.5E-10 49.3 4.5 32 558-589 2-33 (34)
201 PF13431 TPR_17: Tetratricopep 97.8 2.7E-05 5.8E-10 50.2 3.3 34 511-544 1-34 (34)
202 PF06552 TOM20_plant: Plant sp 97.7 0.00012 2.6E-09 65.6 8.2 81 485-565 21-122 (186)
203 PF00515 TPR_1: Tetratricopept 97.7 4.7E-05 1E-09 49.1 4.2 32 524-555 2-33 (34)
204 KOG3785 Uncharacterized conser 97.7 0.00054 1.2E-08 67.3 13.1 49 496-544 64-112 (557)
205 KOG1310 WD40 repeat protein [G 97.7 0.00014 3.1E-09 74.6 9.3 110 483-592 368-480 (758)
206 KOG4648 Uncharacterized conser 97.7 5.2E-05 1.1E-09 73.8 5.9 79 526-604 100-178 (536)
207 COG4785 NlpI Lipoprotein NlpI, 97.7 0.00028 6E-09 64.8 10.0 72 485-556 95-166 (297)
208 PF03704 BTAD: Bacterial trans 97.7 0.0013 2.8E-08 58.7 14.5 98 489-586 6-125 (146)
209 PF07719 TPR_2: Tetratricopept 97.7 9.6E-05 2.1E-09 47.6 5.2 33 558-590 2-34 (34)
210 PF13512 TPR_18: Tetratricopep 97.7 0.00076 1.6E-08 58.7 11.4 108 451-560 9-136 (142)
211 PF14938 SNAP: Soluble NSF att 97.6 0.00041 8.9E-09 69.5 10.9 104 487-590 112-229 (282)
212 PF07719 TPR_2: Tetratricopept 97.6 0.00014 2.9E-09 46.8 4.9 32 524-555 2-33 (34)
213 PF14938 SNAP: Soluble NSF att 97.5 0.00031 6.8E-09 70.3 8.5 101 486-587 72-185 (282)
214 KOG2796 Uncharacterized conser 97.5 0.00091 2E-08 63.2 10.5 106 486-591 209-320 (366)
215 KOG1130 Predicted G-alpha GTPa 97.4 0.00035 7.6E-09 69.8 7.4 98 489-586 195-304 (639)
216 KOG2376 Signal recognition par 97.4 0.0022 4.7E-08 67.3 12.9 91 493-586 83-204 (652)
217 KOG1130 Predicted G-alpha GTPa 97.4 0.00052 1.1E-08 68.6 7.9 101 487-587 233-345 (639)
218 COG3118 Thioredoxin domain-con 97.3 0.0076 1.6E-07 58.5 15.0 97 492-588 137-267 (304)
219 KOG1941 Acetylcholine receptor 97.3 0.0017 3.6E-08 64.1 10.5 99 489-587 122-236 (518)
220 KOG4642 Chaperone-dependent E3 97.3 0.0004 8.6E-09 64.7 5.4 78 526-603 13-90 (284)
221 COG3071 HemY Uncharacterized e 97.3 0.01 2.3E-07 59.6 15.5 98 489-586 118-216 (400)
222 KOG4340 Uncharacterized conser 97.3 0.00078 1.7E-08 64.7 7.4 95 487-581 142-265 (459)
223 KOG3785 Uncharacterized conser 97.3 0.0022 4.9E-08 63.0 10.4 87 497-583 30-117 (557)
224 COG0457 NrfG FOG: TPR repeat [ 97.2 0.01 2.2E-07 55.9 14.7 103 498-600 139-245 (291)
225 KOG2471 TPR repeat-containing 97.2 0.00096 2.1E-08 68.2 7.5 116 487-602 238-380 (696)
226 COG1729 Uncharacterized protei 97.2 0.0035 7.5E-08 60.4 10.9 79 486-564 175-256 (262)
227 COG3071 HemY Uncharacterized e 97.2 0.007 1.5E-07 60.8 13.4 85 501-586 306-390 (400)
228 KOG4340 Uncharacterized conser 97.2 0.0016 3.6E-08 62.6 8.6 117 486-602 41-189 (459)
229 KOG3824 Huntingtin interacting 97.2 0.0017 3.6E-08 62.7 8.4 82 486-567 113-194 (472)
230 KOG2796 Uncharacterized conser 97.2 0.0042 9.1E-08 58.9 10.8 118 487-604 175-299 (366)
231 PF04781 DUF627: Protein of un 97.2 0.0037 7.9E-08 51.6 9.2 93 495-587 2-108 (111)
232 PF14853 Fis1_TPR_C: Fis1 C-te 97.1 0.0028 6.1E-08 45.2 7.1 45 559-603 3-47 (53)
233 KOG3081 Vesicle coat complex C 97.1 0.01 2.2E-07 56.6 12.6 105 488-595 175-280 (299)
234 PF13181 TPR_8: Tetratricopept 97.1 0.0011 2.3E-08 42.6 4.3 31 558-588 2-32 (34)
235 PRK10941 hypothetical protein; 97.0 0.0066 1.4E-07 59.6 11.5 79 489-567 181-259 (269)
236 PF13181 TPR_8: Tetratricopept 97.0 0.0016 3.4E-08 41.8 4.6 30 491-520 3-32 (34)
237 KOG3364 Membrane protein invol 96.9 0.019 4.2E-07 48.9 11.8 83 522-604 31-118 (149)
238 PF05843 Suf: Suppressor of fo 96.9 0.0087 1.9E-07 59.7 11.5 109 487-595 33-145 (280)
239 COG0457 NrfG FOG: TPR repeat [ 96.9 0.031 6.8E-07 52.5 15.1 103 487-589 165-268 (291)
240 KOG4507 Uncharacterized conser 96.9 0.0041 8.9E-08 65.0 9.1 105 496-600 614-719 (886)
241 KOG2376 Signal recognition par 96.9 0.0084 1.8E-07 63.1 11.3 108 483-594 40-147 (652)
242 PRK10941 hypothetical protein; 96.9 0.012 2.5E-07 57.9 11.7 79 524-602 182-260 (269)
243 PF04184 ST7: ST7 protein; In 96.8 0.016 3.5E-07 60.1 12.2 115 483-599 196-338 (539)
244 KOG2053 Mitochondrial inherita 96.8 0.017 3.8E-07 63.6 13.0 116 485-601 39-154 (932)
245 PF09613 HrpB1_HrpK: Bacterial 96.8 0.13 2.8E-06 45.8 16.2 114 487-602 8-121 (160)
246 COG4105 ComL DNA uptake lipopr 96.8 0.088 1.9E-06 50.4 16.1 118 488-605 70-218 (254)
247 PLN03218 maturation of RBCL 1; 96.7 0.043 9.2E-07 64.6 16.8 94 491-585 616-712 (1060)
248 PF12968 DUF3856: Domain of Un 96.7 0.036 7.8E-07 46.1 11.4 93 494-586 14-129 (144)
249 KOG2053 Mitochondrial inherita 96.7 0.017 3.8E-07 63.6 12.3 103 498-601 18-120 (932)
250 COG2976 Uncharacterized protei 96.7 0.047 1E-06 49.8 13.0 101 489-591 89-193 (207)
251 COG4700 Uncharacterized protei 96.7 0.06 1.3E-06 48.6 13.3 96 487-583 122-219 (251)
252 PF10300 DUF3808: Protein of u 96.6 0.016 3.5E-07 62.2 11.1 103 485-587 263-377 (468)
253 PLN03218 maturation of RBCL 1; 96.6 0.067 1.5E-06 63.0 16.8 97 489-586 542-643 (1060)
254 KOG4814 Uncharacterized conser 96.5 0.019 4.1E-07 60.8 10.9 98 490-587 355-458 (872)
255 PRK04841 transcriptional regul 96.5 0.047 1E-06 64.4 15.8 100 488-587 490-603 (903)
256 KOG2610 Uncharacterized conser 96.5 0.074 1.6E-06 52.4 13.9 107 496-602 110-220 (491)
257 KOG1915 Cell cycle control pro 96.5 0.037 7.9E-07 56.9 12.1 108 487-594 71-178 (677)
258 KOG1586 Protein required for f 96.5 0.048 1E-06 51.0 11.9 110 485-595 70-192 (288)
259 PF10300 DUF3808: Protein of u 96.4 0.03 6.5E-07 60.1 12.2 95 502-596 246-344 (468)
260 PF13174 TPR_6: Tetratricopept 96.4 0.0058 1.3E-07 38.7 4.2 31 559-589 2-32 (33)
261 PLN03081 pentatricopeptide (PP 96.4 0.031 6.7E-07 63.8 12.9 96 489-586 462-557 (697)
262 PF03704 BTAD: Bacterial trans 96.4 0.023 5E-07 50.5 9.5 64 489-552 62-125 (146)
263 KOG3081 Vesicle coat complex C 96.4 0.085 1.8E-06 50.5 13.2 115 489-605 137-255 (299)
264 PF05843 Suf: Suppressor of fo 96.4 0.077 1.7E-06 53.0 14.1 101 491-591 3-104 (280)
265 KOG0551 Hsp90 co-chaperone CNS 96.4 0.016 3.4E-07 56.9 8.6 81 523-603 81-165 (390)
266 PF14853 Fis1_TPR_C: Fis1 C-te 96.3 0.02 4.4E-07 40.8 6.8 43 524-566 2-44 (53)
267 KOG3824 Huntingtin interacting 96.3 0.014 3E-07 56.6 7.5 69 531-599 124-192 (472)
268 PF04184 ST7: ST7 protein; In 96.3 0.042 9.1E-07 57.1 11.4 109 489-597 259-386 (539)
269 PF13174 TPR_6: Tetratricopept 96.2 0.0082 1.8E-07 37.9 4.0 30 492-521 3-32 (33)
270 PF09986 DUF2225: Uncharacteri 96.2 0.053 1.2E-06 51.5 11.2 92 500-591 88-199 (214)
271 KOG1586 Protein required for f 96.2 0.052 1.1E-06 50.8 10.6 104 489-592 113-230 (288)
272 PF13176 TPR_7: Tetratricopept 96.2 0.0092 2E-07 38.9 4.2 25 560-584 2-26 (36)
273 KOG0376 Serine-threonine phosp 96.2 0.0034 7.4E-08 64.6 3.2 86 485-570 34-119 (476)
274 PLN03081 pentatricopeptide (PP 96.2 0.038 8.3E-07 63.0 12.1 113 490-604 427-541 (697)
275 PF10602 RPN7: 26S proteasome 96.1 0.098 2.1E-06 48.2 12.2 101 487-587 34-143 (177)
276 PF13176 TPR_7: Tetratricopept 96.1 0.012 2.7E-07 38.2 4.3 25 492-516 2-26 (36)
277 PLN03077 Protein ECB2; Provisi 96.0 0.07 1.5E-06 62.4 13.6 103 499-603 599-703 (857)
278 KOG2396 HAT (Half-A-TPR) repea 96.0 0.089 1.9E-06 54.6 12.3 87 510-596 92-179 (568)
279 KOG0545 Aryl-hydrocarbon recep 96.0 0.075 1.6E-06 50.1 10.6 73 490-562 231-303 (329)
280 KOG0546 HSP90 co-chaperone CPR 96.0 0.0099 2.1E-07 58.9 5.1 116 487-602 220-354 (372)
281 PF14561 TPR_20: Tetratricopep 96.0 0.035 7.7E-07 44.7 7.5 65 508-572 7-73 (90)
282 smart00028 TPR Tetratricopepti 95.9 0.012 2.6E-07 36.3 3.7 30 559-588 3-32 (34)
283 COG4976 Predicted methyltransf 95.9 0.011 2.4E-07 55.0 4.8 58 499-556 5-62 (287)
284 KOG1070 rRNA processing protei 95.9 0.23 5E-06 57.7 15.8 105 495-599 1536-1642(1710)
285 KOG1941 Acetylcholine receptor 95.9 0.041 8.8E-07 54.7 8.7 102 486-587 159-276 (518)
286 smart00028 TPR Tetratricopepti 95.8 0.014 3E-07 35.9 3.8 31 525-555 3-33 (34)
287 PLN03077 Protein ECB2; Provisi 95.8 0.075 1.6E-06 62.2 12.4 96 489-586 625-720 (857)
288 KOG1070 rRNA processing protei 95.8 0.19 4E-06 58.4 14.4 100 488-587 1563-1664(1710)
289 PRK04841 transcriptional regul 95.7 0.14 3E-06 60.4 14.5 99 488-586 451-560 (903)
290 PF14561 TPR_20: Tetratricopep 95.7 0.13 2.7E-06 41.5 9.7 63 542-604 7-71 (90)
291 PF15015 NYD-SP12_N: Spermatog 95.5 0.11 2.4E-06 52.6 10.4 89 496-584 183-289 (569)
292 PF13281 DUF4071: Domain of un 95.5 0.76 1.7E-05 47.2 16.4 39 562-600 310-348 (374)
293 TIGR02561 HrpB1_HrpK type III 95.3 0.81 1.7E-05 40.1 13.7 89 487-575 8-96 (153)
294 KOG0530 Protein farnesyltransf 95.3 0.23 5E-06 47.5 11.0 92 504-595 93-185 (318)
295 KOG1585 Protein required for f 95.2 0.54 1.2E-05 44.6 13.1 104 487-590 29-143 (308)
296 KOG2471 TPR repeat-containing 95.2 0.024 5.1E-07 58.4 4.6 83 488-570 282-382 (696)
297 KOG1915 Cell cycle control pro 95.1 0.27 5.9E-06 50.8 11.8 100 487-587 402-501 (677)
298 COG3914 Spy Predicted O-linked 95.1 0.57 1.2E-05 49.9 14.4 117 482-599 61-184 (620)
299 COG4976 Predicted methyltransf 95.1 0.034 7.4E-07 51.8 4.9 62 532-593 4-65 (287)
300 KOG3364 Membrane protein invol 95.1 0.15 3.3E-06 43.6 8.4 79 489-567 32-115 (149)
301 PF02259 FAT: FAT domain; Int 95.1 0.54 1.2E-05 48.5 14.7 117 486-602 143-303 (352)
302 KOG2610 Uncharacterized conser 95.1 0.16 3.5E-06 50.1 9.6 106 486-591 172-283 (491)
303 KOG4151 Myosin assembly protei 94.9 0.1 2.2E-06 57.2 8.8 113 488-600 52-170 (748)
304 COG2912 Uncharacterized conser 94.8 0.17 3.6E-06 49.1 9.0 78 489-566 181-258 (269)
305 COG3898 Uncharacterized membra 94.8 1.2 2.5E-05 45.2 15.0 101 492-593 191-299 (531)
306 PF08631 SPO22: Meiosis protei 94.7 1.9 4.1E-05 43.0 16.7 103 486-588 32-152 (278)
307 KOG1308 Hsp70-interacting prot 94.6 0.035 7.5E-07 54.9 4.0 74 482-555 141-214 (377)
308 COG2912 Uncharacterized conser 94.6 0.22 4.9E-06 48.2 9.3 78 524-601 182-259 (269)
309 COG0790 FOG: TPR repeat, SEL1 94.3 1.2 2.6E-05 44.6 14.7 107 488-598 108-230 (292)
310 PF13281 DUF4071: Domain of un 94.0 1 2.2E-05 46.3 13.1 102 489-590 141-259 (374)
311 KOG1585 Protein required for f 93.9 0.51 1.1E-05 44.7 9.7 102 486-587 107-220 (308)
312 PF07079 DUF1347: Protein of u 93.7 1.2 2.6E-05 46.1 12.6 96 486-582 376-520 (549)
313 COG5191 Uncharacterized conser 93.5 0.17 3.8E-06 49.3 6.1 80 483-562 101-181 (435)
314 KOG1550 Extracellular protein 93.4 0.95 2.1E-05 49.9 12.7 101 494-600 293-405 (552)
315 PF09613 HrpB1_HrpK: Bacterial 93.3 1.3 2.7E-05 39.6 10.9 82 524-605 11-92 (160)
316 KOG0529 Protein geranylgeranyl 93.2 0.92 2E-05 46.4 11.0 100 504-603 90-195 (421)
317 PF13374 TPR_10: Tetratricopep 93.2 0.21 4.6E-06 33.2 4.7 29 490-518 3-31 (42)
318 PF08424 NRDE-2: NRDE-2, neces 93.2 2.2 4.7E-05 43.5 14.1 103 484-586 14-131 (321)
319 KOG3617 WD40 and TPR repeat-co 92.9 1.2 2.6E-05 49.3 11.9 102 484-585 853-995 (1416)
320 PF08424 NRDE-2: NRDE-2, neces 92.9 2 4.3E-05 43.8 13.3 92 509-600 5-108 (321)
321 KOG4507 Uncharacterized conser 92.8 0.42 9.1E-06 50.7 8.1 75 491-565 644-718 (886)
322 PF13374 TPR_10: Tetratricopep 92.8 0.23 5E-06 33.0 4.4 29 524-552 3-31 (42)
323 PF12862 Apc5: Anaphase-promot 92.6 0.57 1.2E-05 38.1 7.2 54 499-552 8-70 (94)
324 KOG1550 Extracellular protein 92.3 2 4.3E-05 47.4 13.3 95 489-587 325-427 (552)
325 KOG2396 HAT (Half-A-TPR) repea 92.2 0.84 1.8E-05 47.7 9.3 75 488-562 104-179 (568)
326 KOG0530 Protein farnesyltransf 92.2 1.5 3.3E-05 42.1 10.3 122 482-603 105-233 (318)
327 PF02259 FAT: FAT domain; Int 92.2 1.9 4.2E-05 44.3 12.5 102 488-589 183-341 (352)
328 KOG2047 mRNA splicing factor [ 92.1 3 6.6E-05 45.1 13.3 110 490-599 388-519 (835)
329 PF10516 SHNi-TPR: SHNi-TPR; 91.8 0.26 5.6E-06 32.4 3.4 28 525-552 3-30 (38)
330 PRK13184 pknD serine/threonine 91.8 1.3 2.9E-05 51.1 11.4 102 495-597 481-592 (932)
331 PF04910 Tcf25: Transcriptiona 91.6 2.3 5E-05 44.0 12.0 77 516-592 33-139 (360)
332 PF12862 Apc5: Anaphase-promot 91.2 1 2.2E-05 36.6 7.2 56 533-588 8-72 (94)
333 COG5191 Uncharacterized conser 91.2 0.34 7.4E-06 47.4 5.0 87 513-599 97-184 (435)
334 PF09986 DUF2225: Uncharacteri 90.9 2.5 5.4E-05 40.2 10.6 79 487-565 116-208 (214)
335 PF07720 TPR_3: Tetratricopept 90.7 0.9 2E-05 29.5 5.1 31 491-521 3-35 (36)
336 COG3629 DnrI DNA-binding trans 90.6 3.9 8.5E-05 40.3 11.9 62 524-585 154-215 (280)
337 PF10516 SHNi-TPR: SHNi-TPR; 90.5 0.48 1E-05 31.1 3.7 30 558-587 2-31 (38)
338 PF07720 TPR_3: Tetratricopept 90.4 0.99 2.1E-05 29.3 5.1 31 559-589 3-35 (36)
339 PF07079 DUF1347: Protein of u 90.3 2.9 6.2E-05 43.4 10.8 61 487-548 460-520 (549)
340 COG3629 DnrI DNA-binding trans 90.2 1.6 3.5E-05 42.9 8.8 65 488-552 152-216 (280)
341 COG2976 Uncharacterized protei 90.1 1.7 3.7E-05 40.0 8.1 69 488-557 125-193 (207)
342 KOG2047 mRNA splicing factor [ 89.8 4.4 9.6E-05 43.9 12.0 100 489-588 477-581 (835)
343 PF08631 SPO22: Meiosis protei 89.3 8 0.00017 38.5 13.3 96 499-594 3-124 (278)
344 KOG0686 COP9 signalosome, subu 89.2 3.5 7.7E-05 42.1 10.3 95 489-583 150-255 (466)
345 PF10373 EST1_DNA_bind: Est1 D 88.7 1.5 3.3E-05 43.4 7.8 62 508-569 1-62 (278)
346 COG3898 Uncharacterized membra 88.7 6.4 0.00014 40.1 11.6 96 489-585 120-216 (531)
347 PF10579 Rapsyn_N: Rapsyn N-te 88.6 4.5 9.8E-05 31.3 8.2 60 489-548 6-68 (80)
348 PF04910 Tcf25: Transcriptiona 88.3 12 0.00026 38.7 14.1 110 482-591 96-227 (360)
349 COG3914 Spy Predicted O-linked 88.3 4.9 0.00011 43.1 11.1 102 500-601 41-146 (620)
350 PF12968 DUF3856: Domain of Un 88.3 10 0.00022 32.0 10.6 66 487-552 53-129 (144)
351 COG0790 FOG: TPR repeat, SEL1 88.1 14 0.0003 36.9 14.3 97 502-602 90-198 (292)
352 TIGR02561 HrpB1_HrpK type III 88.1 6.1 0.00013 34.8 9.8 80 526-605 13-92 (153)
353 KOG2300 Uncharacterized conser 87.7 11 0.00025 39.5 13.0 98 487-587 365-475 (629)
354 PF10373 EST1_DNA_bind: Est1 D 87.6 1.6 3.5E-05 43.2 7.1 62 542-603 1-62 (278)
355 COG4649 Uncharacterized protei 87.5 16 0.00036 33.1 12.2 108 489-597 94-206 (221)
356 KOG4814 Uncharacterized conser 87.4 3.6 7.7E-05 44.5 9.4 76 524-599 355-436 (872)
357 KOG1258 mRNA processing protei 87.3 19 0.00041 39.0 14.8 115 483-597 291-406 (577)
358 PF10579 Rapsyn_N: Rapsyn N-te 87.3 4.7 0.0001 31.2 7.6 58 526-583 9-69 (80)
359 PF07721 TPR_4: Tetratricopept 87.1 0.8 1.7E-05 27.1 2.8 23 559-581 3-25 (26)
360 PRK15180 Vi polysaccharide bio 87.0 8.2 0.00018 40.4 11.5 95 497-591 297-391 (831)
361 PF10345 Cohesin_load: Cohesin 86.5 37 0.00079 38.1 17.7 109 486-595 56-179 (608)
362 KOG2041 WD40 repeat protein [G 86.3 4.7 0.0001 44.0 9.7 85 486-582 793-877 (1189)
363 COG2909 MalT ATP-dependent tra 85.6 9.7 0.00021 43.0 12.0 100 488-587 414-527 (894)
364 PRK15180 Vi polysaccharide bio 85.4 2.8 6E-05 43.7 7.3 101 490-590 324-424 (831)
365 PF10602 RPN7: 26S proteasome 85.2 9.3 0.0002 35.1 10.2 65 523-587 36-103 (177)
366 KOG2300 Uncharacterized conser 85.0 15 0.00033 38.6 12.3 95 487-581 44-151 (629)
367 PF04781 DUF627: Protein of un 84.6 5.9 0.00013 33.0 7.6 71 529-599 2-86 (111)
368 PF07721 TPR_4: Tetratricopept 84.6 1.3 2.8E-05 26.2 2.8 22 525-546 3-24 (26)
369 KOG1914 mRNA cleavage and poly 84.3 9.4 0.0002 40.7 10.6 95 480-576 11-106 (656)
370 KOG0529 Protein geranylgeranyl 83.9 23 0.0005 36.6 12.9 108 495-602 34-156 (421)
371 KOG2581 26S proteasome regulat 83.6 14 0.0003 38.0 11.0 103 488-590 168-280 (493)
372 KOG3807 Predicted membrane pro 83.5 17 0.00038 36.2 11.4 100 485-586 214-340 (556)
373 PF11207 DUF2989: Protein of u 82.9 14 0.00029 34.5 10.0 73 504-577 121-198 (203)
374 TIGR03504 FimV_Cterm FimV C-te 82.3 6.2 0.00013 26.9 5.7 25 561-585 3-27 (44)
375 cd02682 MIT_AAA_Arch MIT: doma 82.1 7.6 0.00016 29.9 6.8 32 487-518 4-35 (75)
376 KOG0546 HSP90 co-chaperone CPR 82.0 0.97 2.1E-05 45.3 2.4 82 492-573 278-359 (372)
377 KOG1914 mRNA cleavage and poly 82.0 13 0.00028 39.6 10.6 75 513-588 10-84 (656)
378 KOG3617 WD40 and TPR repeat-co 81.9 9.3 0.0002 42.7 9.8 63 523-585 858-940 (1416)
379 KOG0890 Protein kinase of the 81.8 15 0.00032 46.1 12.4 115 485-601 1666-1799(2382)
380 COG3118 Thioredoxin domain-con 81.1 5.6 0.00012 39.2 7.2 54 529-582 140-193 (304)
381 COG3947 Response regulator con 81.1 6.1 0.00013 38.7 7.3 57 492-548 282-338 (361)
382 KOG2561 Adaptor protein NUB1, 80.9 11 0.00024 39.0 9.3 96 491-586 165-296 (568)
383 PF11207 DUF2989: Protein of u 79.8 7.7 0.00017 36.1 7.3 56 487-543 139-198 (203)
384 KOG2422 Uncharacterized conser 79.7 27 0.00058 37.7 12.0 31 486-516 281-311 (665)
385 COG4455 ImpE Protein of avirul 79.6 25 0.00054 33.2 10.4 94 496-589 8-118 (273)
386 PF14863 Alkyl_sulf_dimr: Alky 79.5 6.6 0.00014 34.5 6.5 50 489-538 70-119 (141)
387 PF11817 Foie-gras_1: Foie gra 79.4 22 0.00048 34.6 11.0 61 489-549 178-244 (247)
388 PF11817 Foie-gras_1: Foie gra 79.0 19 0.00042 35.0 10.5 62 523-584 178-245 (247)
389 KOG1839 Uncharacterized protei 78.9 6.2 0.00013 46.4 7.8 103 485-587 969-1087(1236)
390 PF14863 Alkyl_sulf_dimr: Alky 78.6 7.3 0.00016 34.2 6.5 53 523-575 70-122 (141)
391 PF10255 Paf67: RNA polymerase 78.3 4.8 0.0001 41.9 6.2 90 491-589 124-231 (404)
392 COG3947 Response regulator con 78.2 10 0.00022 37.3 7.7 61 525-585 281-341 (361)
393 COG4455 ImpE Protein of avirul 76.9 15 0.00033 34.5 8.2 60 532-591 10-69 (273)
394 PF10255 Paf67: RNA polymerase 76.7 8.7 0.00019 40.1 7.5 32 486-517 161-192 (404)
395 PF10345 Cohesin_load: Cohesin 76.6 34 0.00074 38.3 12.9 58 524-581 362-428 (608)
396 PF09670 Cas_Cas02710: CRISPR- 76.2 48 0.001 34.6 13.0 61 491-551 133-197 (379)
397 KOG1310 WD40 repeat protein [G 75.2 6.2 0.00013 41.8 5.8 70 535-604 386-458 (758)
398 PF11846 DUF3366: Domain of un 74.2 17 0.00037 33.8 8.3 48 542-590 130-177 (193)
399 cd02681 MIT_calpain7_1 MIT: do 72.5 9 0.00019 29.6 4.8 32 487-518 4-35 (76)
400 PF04212 MIT: MIT (microtubule 72.3 10 0.00022 28.6 5.1 32 487-518 3-34 (69)
401 smart00386 HAT HAT (Half-A-TPR 72.0 11 0.00025 22.7 4.6 27 504-530 2-28 (33)
402 PRK13184 pknD serine/threonine 70.9 37 0.0008 39.7 11.4 102 489-593 512-627 (932)
403 PF05053 Menin: Menin; InterP 70.8 81 0.0018 34.1 12.8 102 484-600 252-367 (618)
404 PF10858 DUF2659: Protein of u 70.3 79 0.0017 28.4 10.6 101 493-593 97-207 (220)
405 PHA01486 nonstructural protein 69.6 4.1 8.9E-05 24.0 1.8 27 1-34 1-28 (32)
406 KOG2422 Uncharacterized conser 69.5 1.8E+02 0.0038 31.8 15.4 97 487-583 289-404 (665)
407 smart00386 HAT HAT (Half-A-TPR 69.1 11 0.00024 22.7 4.1 27 538-564 2-28 (33)
408 PHA02537 M terminase endonucle 68.0 6.3 0.00014 37.6 3.8 90 500-589 94-210 (230)
409 cd02683 MIT_1 MIT: domain cont 67.2 12 0.00026 29.0 4.6 31 487-517 4-34 (77)
410 KOG1839 Uncharacterized protei 66.4 45 0.00097 39.7 10.7 105 482-586 1008-1128(1236)
411 COG4649 Uncharacterized protei 66.2 63 0.0014 29.4 9.3 75 494-569 137-212 (221)
412 PF04053 Coatomer_WDAD: Coatom 66.1 62 0.0013 34.6 11.2 82 488-582 346-427 (443)
413 cd02682 MIT_AAA_Arch MIT: doma 65.2 17 0.00038 27.9 5.0 40 526-565 9-55 (75)
414 PF13226 DUF4034: Domain of un 64.7 86 0.0019 31.0 11.0 28 573-600 115-142 (277)
415 COG4941 Predicted RNA polymera 64.6 55 0.0012 33.0 9.5 99 502-601 309-409 (415)
416 PF07219 HemY_N: HemY protein 62.1 41 0.00089 27.9 7.3 52 487-538 57-108 (108)
417 PRK15490 Vi polysaccharide bio 61.9 99 0.0021 34.0 11.8 59 487-547 40-98 (578)
418 PF10952 DUF2753: Protein of u 61.6 38 0.00082 28.8 6.7 101 490-596 2-121 (140)
419 KOG4014 Uncharacterized conser 61.5 1.3E+02 0.0029 27.6 11.7 135 455-601 40-210 (248)
420 PF12854 PPR_1: PPR repeat 61.5 19 0.00041 22.7 4.0 27 556-582 6-32 (34)
421 TIGR03504 FimV_Cterm FimV C-te 61.4 16 0.00034 24.9 3.7 25 527-551 3-27 (44)
422 COG2909 MalT ATP-dependent tra 61.3 1.4E+02 0.003 34.3 12.9 88 485-572 454-552 (894)
423 PF09205 DUF1955: Domain of un 60.9 50 0.0011 28.7 7.4 48 502-549 99-146 (161)
424 KOG1258 mRNA processing protei 60.8 2.3E+02 0.0051 30.9 14.1 112 490-602 367-486 (577)
425 cd02680 MIT_calpain7_2 MIT: do 60.7 17 0.00036 28.1 4.2 32 487-518 4-35 (75)
426 smart00745 MIT Microtubule Int 60.1 22 0.00047 27.4 5.0 31 487-517 6-36 (77)
427 cd02678 MIT_VPS4 MIT: domain c 59.6 22 0.00048 27.3 4.9 32 487-518 4-35 (75)
428 PF15015 NYD-SP12_N: Spermatog 58.8 19 0.00041 37.3 5.3 59 492-550 231-289 (569)
429 COG5536 BET4 Protein prenyltra 58.3 36 0.00077 33.3 6.9 116 486-601 105-237 (328)
430 COG5107 RNA14 Pre-mRNA 3'-end 58.0 1.4E+02 0.003 31.6 11.3 118 483-601 36-162 (660)
431 KOG0276 Vesicle coat complex C 57.3 45 0.00098 36.3 8.0 77 494-586 619-695 (794)
432 cd02656 MIT MIT: domain contai 55.2 29 0.00063 26.6 4.9 31 488-518 5-35 (75)
433 cd02680 MIT_calpain7_2 MIT: do 55.0 23 0.00051 27.3 4.2 33 505-552 3-35 (75)
434 COG5187 RPN7 26S proteasome re 54.9 1.3E+02 0.0028 29.8 10.0 104 484-587 110-222 (412)
435 cd02684 MIT_2 MIT: domain cont 54.8 30 0.00066 26.6 4.9 32 487-518 4-35 (75)
436 PF04053 Coatomer_WDAD: Coatom 54.5 68 0.0015 34.3 9.1 29 521-549 345-373 (443)
437 PF04190 DUF410: Protein of un 53.6 2.3E+02 0.0049 27.8 12.3 95 487-581 8-114 (260)
438 PF11846 DUF3366: Domain of un 53.0 44 0.00095 31.0 6.7 49 505-554 127-175 (193)
439 smart00299 CLH Clathrin heavy 52.9 86 0.0019 27.1 8.3 79 500-580 18-105 (140)
440 PF09205 DUF1955: Domain of un 52.8 90 0.002 27.1 7.6 61 526-586 88-149 (161)
441 PF01239 PPTA: Protein prenylt 51.8 44 0.00096 20.4 4.4 21 545-565 5-25 (31)
442 PF08311 Mad3_BUB1_I: Mad3/BUB 51.5 1E+02 0.0022 26.5 8.1 60 485-550 65-126 (126)
443 KOG3807 Predicted membrane pro 51.5 1.5E+02 0.0032 29.9 10.0 87 500-588 195-306 (556)
444 PF01535 PPR: PPR repeat; Int 51.3 23 0.0005 21.0 3.2 26 560-585 3-28 (31)
445 PF13041 PPR_2: PPR repeat fam 51.1 38 0.00082 23.3 4.6 32 556-587 2-33 (50)
446 cd02679 MIT_spastin MIT: domai 51.0 32 0.0007 26.8 4.4 30 488-517 7-36 (79)
447 KOG3783 Uncharacterized conser 51.0 1.1E+02 0.0024 33.0 9.6 64 489-552 449-520 (546)
448 TIGR02710 CRISPR-associated pr 50.9 3.1E+02 0.0067 28.6 13.4 53 495-547 136-195 (380)
449 KOG0985 Vesicle coat protein c 50.7 1.2E+02 0.0026 35.4 10.2 58 487-549 1102-1159(1666)
450 PF12739 TRAPPC-Trs85: ER-Golg 50.4 2.5E+02 0.0054 29.7 12.6 97 490-586 209-329 (414)
451 KOG0687 26S proteasome regulat 50.2 2.9E+02 0.0063 28.0 12.0 101 485-586 100-210 (393)
452 KOG0890 Protein kinase of the 49.7 2.9E+02 0.0063 35.6 14.0 96 490-587 1630-1732(2382)
453 cd02677 MIT_SNX15 MIT: domain 49.7 34 0.00074 26.4 4.4 30 488-517 5-34 (75)
454 PF07219 HemY_N: HemY protein 49.2 81 0.0018 26.2 7.0 46 527-572 63-108 (108)
455 KOG2581 26S proteasome regulat 48.6 3.4E+02 0.0074 28.4 13.1 108 480-590 238-353 (493)
456 COG5091 SGT1 Suppressor of G2 48.5 29 0.00064 33.6 4.6 93 498-590 4-112 (368)
457 KOG1497 COP9 signalosome, subu 48.4 3E+02 0.0065 27.8 11.5 96 489-585 103-212 (399)
458 PF01239 PPTA: Protein prenylt 48.2 62 0.0013 19.7 4.8 30 576-605 2-31 (31)
459 TIGR00756 PPR pentatricopeptid 48.0 39 0.00085 20.4 4.0 26 560-585 3-28 (35)
460 cd02683 MIT_1 MIT: domain cont 47.5 97 0.0021 24.0 6.6 14 506-519 4-17 (77)
461 KOG0985 Vesicle coat protein c 47.1 1.9E+02 0.0042 33.8 11.1 62 521-587 1102-1163(1666)
462 PF13041 PPR_2: PPR repeat fam 47.0 91 0.002 21.3 6.1 26 492-517 6-31 (50)
463 COG2015 Alkyl sulfatase and re 46.7 73 0.0016 33.7 7.4 52 526-577 455-506 (655)
464 PRK15490 Vi polysaccharide bio 46.6 1.5E+02 0.0032 32.7 10.1 82 498-581 17-98 (578)
465 KOG0292 Vesicle coat complex C 46.5 3.3E+02 0.0072 31.4 12.6 111 487-597 989-1124(1202)
466 KOG0889 Histone acetyltransfer 46.2 1.3E+02 0.0029 39.9 10.8 114 489-603 2774-2899(3550)
467 PF04190 DUF410: Protein of un 45.7 1.8E+02 0.0039 28.5 10.0 79 486-586 87-170 (260)
468 cd02677 MIT_SNX15 MIT: domain 45.7 29 0.00064 26.7 3.5 17 536-552 19-35 (75)
469 KOG2114 Vacuolar assembly/sort 44.2 1.2E+02 0.0025 34.6 8.9 33 486-518 365-397 (933)
470 PF15469 Sec5: Exocyst complex 43.7 1.5E+02 0.0033 27.1 8.7 81 499-596 96-178 (182)
471 COG2015 Alkyl sulfatase and re 43.6 99 0.0021 32.8 7.8 48 558-605 453-500 (655)
472 PF12854 PPR_1: PPR repeat 43.3 57 0.0012 20.5 4.0 24 524-547 8-31 (34)
473 COG1747 Uncharacterized N-term 41.2 2.2E+02 0.0048 30.6 9.9 62 521-584 97-158 (711)
474 COG5159 RPN6 26S proteasome re 40.9 1.7E+02 0.0038 28.9 8.5 93 493-585 7-153 (421)
475 KOG3783 Uncharacterized conser 40.5 1.5E+02 0.0032 32.0 8.7 72 515-586 259-332 (546)
476 COG2178 Predicted RNA-binding 40.3 3.1E+02 0.0067 25.5 10.2 96 487-583 27-147 (204)
477 COG5107 RNA14 Pre-mRNA 3'-end 40.1 2.2E+02 0.0047 30.2 9.5 79 511-589 30-108 (660)
478 COG5536 BET4 Protein prenyltra 39.8 73 0.0016 31.3 5.8 92 506-597 91-190 (328)
479 PF06957 COPI_C: Coatomer (COP 39.6 2.4E+02 0.0053 29.8 10.1 101 494-594 209-337 (422)
480 PF13812 PPR_3: Pentatricopept 39.6 80 0.0017 19.1 4.4 27 559-585 3-29 (34)
481 smart00671 SEL1 Sel1-like repe 39.4 58 0.0013 20.1 3.7 26 492-517 4-33 (36)
482 COG4941 Predicted RNA polymera 39.1 1.7E+02 0.0038 29.6 8.4 71 495-565 335-407 (415)
483 PF08238 Sel1: Sel1 repeat; I 38.9 70 0.0015 20.2 4.2 13 573-585 24-36 (39)
484 KOG1538 Uncharacterized conser 38.5 64 0.0014 35.4 5.7 132 439-577 719-857 (1081)
485 COG1747 Uncharacterized N-term 38.5 5.5E+02 0.012 27.9 12.4 35 565-599 213-247 (711)
486 PF13226 DUF4034: Domain of un 38.4 1.6E+02 0.0034 29.2 8.1 68 507-574 61-150 (277)
487 cd02684 MIT_2 MIT: domain cont 37.3 65 0.0014 24.8 4.2 32 505-551 3-34 (75)
488 PF12753 Nro1: Nuclear pore co 37.2 43 0.00094 34.6 4.1 13 573-585 378-390 (404)
489 PF02184 HAT: HAT (Half-A-TPR) 36.8 71 0.0015 20.1 3.4 26 538-564 2-27 (32)
490 KOG0276 Vesicle coat complex C 35.7 1.9E+02 0.0042 31.7 8.6 80 499-583 647-747 (794)
491 PRK11619 lytic murein transgly 35.1 3.4E+02 0.0073 30.7 11.1 96 489-585 279-374 (644)
492 PF04212 MIT: MIT (microtubule 34.5 96 0.0021 23.2 4.8 13 570-582 18-30 (69)
493 cd00280 TRFH Telomeric Repeat 34.3 84 0.0018 28.9 5.0 49 496-545 118-166 (200)
494 PF09797 NatB_MDM20: N-acetylt 33.9 3.6E+02 0.0079 27.8 10.7 46 503-548 197-242 (365)
495 KOG4279 Serine/threonine prote 33.9 99 0.0022 34.6 6.3 101 500-601 298-410 (1226)
496 PF07163 Pex26: Pex26 protein; 33.8 3.7E+02 0.0081 26.6 9.5 101 490-591 36-151 (309)
497 smart00101 14_3_3 14-3-3 homol 33.4 3.3E+02 0.0071 26.5 9.3 66 486-551 115-199 (244)
498 smart00745 MIT Microtubule Int 33.3 90 0.002 23.9 4.6 17 535-551 20-36 (77)
499 cd02679 MIT_spastin MIT: domai 33.2 82 0.0018 24.6 4.2 18 537-554 3-20 (79)
500 PF09797 NatB_MDM20: N-acetylt 32.9 2.5E+02 0.0054 29.0 9.2 46 538-583 198-243 (365)
No 1
>COG0154 GatA Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=8e-90 Score=722.77 Aligned_cols=422 Identities=27% Similarity=0.335 Sum_probs=340.3
Q ss_pred HHHHhhhh-----HHHHHHHHHhhcCcccCCCCcCceeeecccCCCC--CCC-------CCCCCCCCCCceEEEeeccCC
Q 007401 21 IGVSVVGF-----VVLAETLRRRRNPKLNGRVDFGAFLERFELIPFP--QPP-------PPAARQPLAGLKFAIKDVFDV 86 (605)
Q Consensus 21 ~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~a~~--~a~-------~~~~~gpL~Gvp~~vKD~~~~ 86 (605)
++.+|++. +|++|+++.+++||++.|+.+|||+....+.++. +|+ .+...|||+||||+|||||+|
T Consensus 8 ~~~~l~~~~~~~~~s~~e~~~~~l~ri~~~~~~~na~~~~~~e~a~~~~~A~~~d~~~~~g~~~gpL~GvPiavKDn~~~ 87 (475)
T COG0154 8 TAAELAALLRAKELSAVELVEAYLARIEALNPDLNAFVAVDPEAALALAEAAAADARLAAGEPLGPLAGVPIAVKDNIDT 87 (475)
T ss_pred hHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCCCEEEEeChhhcchHHHHHHHHHHHhcCCCCCCcCCceEEEeecccc
Confidence 45555543 9999999999999999999999999999887643 332 235578999999999999999
Q ss_pred CCcccCCCchhhhhcCCCCCCChHHHHHHHhCCCeEeeecccccccccCCCCCCCCCCCCCCCCCCCCCCCCchHHHHHH
Q 007401 87 KGYVTGFGSPDWKRDHHEAERTAVVVTLLLKNGATCIGKTVLDEFAFGITGENKHYGTPVNPQMPSHIPGGSSSGSAVAV 166 (605)
Q Consensus 87 ~G~~tt~Gs~~~~~~~~~~~~da~~V~rL~~aGai~~GKt~~~e~~~~~~~~n~~~G~~~NP~~~~~~~GGSSgGsaaaV 166 (605)
+|++||+||+.+.+ +++.+||++|+||++|||||+||||||||+|+.+|+|++||+|+||||++|+||||||||||||
T Consensus 88 ~G~~Tt~gS~~l~~--~~p~~DA~vV~rL~~aGaviiGKTNm~Efa~g~~~~~s~~G~t~NP~~~~~~pGGSSgGSAaAV 165 (475)
T COG0154 88 AGLPTTAGSKALED--YVPPYDATVVERLRAAGAVILGKTNMDEFAMGSSTENSAFGPTRNPWNLERVPGGSSGGSAAAV 165 (475)
T ss_pred CCCccCccChhhcc--CCCCcCcHHHHHHHHCCCEEEeecCCchhhcCCCCCCCCCCCCCCCCCCCCCCCcCchHHHHHH
Confidence 99999999999975 6779999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCceeeccCCCCccchhhhhcccccccCCCCCccCCCCccCCCCCccccccccCHHHHHHHHHHHccCCCCC-----
Q 007401 167 AAQLVDFALGTDTIGCVRVPASFCGILGYRPSHGTVSMIGVLPNSQSLDTVGLLARNASILHRVGHVLLQLNAVE----- 241 (605)
Q Consensus 167 Aag~~~~a~GtD~gGSiR~PAa~~Gv~GlkPt~G~v~~~G~~p~~~~~d~~G~~ar~~~d~~~v~~~~~~~~~~~----- 241 (605)
|+|++++|||||||||||+|||||||||||||+||||+.|++|+++|+|++|||+|||+|++.+++++.+.+..+
T Consensus 166 Aag~~~~alGSDtGGSIR~PAa~cGvvGlKPT~Grvsr~g~~~~a~sld~~GplartV~D~a~l~~v~~g~D~~d~~~~~ 245 (475)
T COG0154 166 AAGLVPLALGSDTGGSIRIPAAFCGLVGLKPTYGRVSRYGVVPLASSLDQIGPLARTVRDAALLLDVIAGPDPRDSPLPP 245 (475)
T ss_pred HhCCcchhcccCCCCchhhhhhhhCceeeCCCCCccCCCCCccccCCcCccCcccCCHHHHHHHHHHHcCCCCccccccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999998754332
Q ss_pred ---------cccC--ceeeeccchhhhcCCchhhHHHHHHHHHHHHhCCCCCccccccccc-cccCcchhhhhhcCCCCC
Q 007401 242 ---------PRRA--RRLIFADDIFQLSKVPKLKTIHVISKAIESLSGYQNPEHMNVGQYI-ASNVPSLKGLRAQSTSPE 309 (605)
Q Consensus 242 ---------~~~~--~~l~~~~~~~~~~~~~~~~~~~~~~~a~~~l~g~~~~~~~~l~~~v-~~~~p~~~~~~~~~~~~~ 309 (605)
..+. .++.++.+.... ....+++.+.+.++++.|+..+ +.+ +..+|.+.....
T Consensus 246 ~~~~~~~~~~~~~~~lrigv~~~~~~~-~~~~~~v~~~~~~a~~~l~~~G--------a~v~~v~lp~~~~~~~------ 310 (475)
T COG0154 246 PPPVPPALAGKDLKGLRIGVPKELGGG-GPLDPDVRAAFEAAVKALEAAG--------AEVVEVSLPLLSDDYA------ 310 (475)
T ss_pred ccCccchhhccCCCCcEEEEECccccc-CCCcHHHHHHHHHHHHHHHHCC--------CEEEeccCCchhhhhh------
Confidence 1112 345555554321 1234689999999999996333 222 334443221000
Q ss_pred CchhHHHHHHHHHHHhhhhhhHhhHHH--HHHhcCCCCChhHHHHHHHHhcCCHHHHHHHHHHHHHH---HHHHHHHhCC
Q 007401 310 NGTATLKALSSVMLSLQRYEFKTIYEE--WVKSAKPRLGYNVFERVLEAINTTQDNIKILYKVRNEM---RAALQRLLKD 384 (605)
Q Consensus 310 ~~~~~~~~~~~~~~~l~~~e~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~a~~~r~~~---~~~~~~~~~~ 384 (605)
...+. ......+.+..+.. +.......+++++++++..|..++..+|..+...|... ++.+.++|++
T Consensus 311 -----~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ri~~G~~~~~~~~~~a~~~~~~~~~i~~~~~~~f~~ 382 (475)
T COG0154 311 -----LAAYY---LARFDGERYGLRAADLYGKTRAEGFGPEVKRRIMLGTYLLSAGYYDAYYRRAQKTLIRRAFDKLFEE 382 (475)
T ss_pred -----hhHHH---HHHhhhhhhhhcchhhhhhhhhhcccHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 00000 00000011111111 44555677999999999999999999999998888555 9999999999
Q ss_pred CcEEEEeCCCCCCccCCc-cc-ccchhhhhchhhhcccccccCCceeeeecccC-CCCCceeEEeeccCCchhHHhHHHH
Q 007401 385 DKILVIPTVSDPPLKLNT-KK-TYSAEFHDRTLVLSSIGSMSGCCQVAIPIGKY-NEHPISISFITYHGGDKFLLDTVLD 461 (605)
Q Consensus 385 ~Dvll~Pt~~~~ap~~~~-~~-~~~~~~~~~~~~~t~~~nl~G~PaisvP~G~~-~glp~g~~~~~~~~~d~~ll~~a~~ 461 (605)
||+||+||+|.+||++++ .. .........+..+|.++|++|+|++|||+|++ +|||+|+|+++++++|..|++++..
T Consensus 383 ~D~ll~Pt~~~~a~~ig~~~~~~~~~~~~~~~~~~t~~~Nl~G~PaisvP~g~~~~GlPvGlqlig~~~~d~~LL~~a~~ 462 (475)
T COG0154 383 VDVLLTPTTPTPAPKIGESESDGDDPLEMYLLDVFTVPANLAGLPAISVPAGFTADGLPVGLQLIGPAFDDATLLRLAAA 462 (475)
T ss_pred CCEEEeCCCCCCCcccccccccccCHHHHhhhccccccccccCCCeEEeccCCCCCCCCeeEEEecCCCCHHHHHHHHHH
Confidence 999999999999999997 21 11111222233589999999999999999998 5999999999999999999999999
Q ss_pred HHhHHH
Q 007401 462 LYDSLQ 467 (605)
Q Consensus 462 l~~~~~ 467 (605)
+++...
T Consensus 463 ~E~~~~ 468 (475)
T COG0154 463 LEQALG 468 (475)
T ss_pred HHHhhC
Confidence 988543
No 2
>PLN02722 indole-3-acetamide amidohydrolase
Probab=100.00 E-value=9e-89 Score=709.63 Aligned_cols=417 Identities=51% Similarity=0.868 Sum_probs=336.4
Q ss_pred cCCCCcCceeeecccCCCCCCCCCCCCCCCCCceEEEeeccCCCCcccCCCchhhhhcCCCCCCChHHHHHHHhCCCeEe
Q 007401 44 NGRVDFGAFLERFELIPFPQPPPPAARQPLAGLKFAIKDVFDVKGYVTGFGSPDWKRDHHEAERTAVVVTLLLKNGATCI 123 (605)
Q Consensus 44 ~~~~~~~a~~~~~~~~a~~~a~~~~~~gpL~Gvp~~vKD~~~~~G~~tt~Gs~~~~~~~~~~~~da~~V~rL~~aGai~~ 123 (605)
+.|+.+|||++.+..+. ..+...||||||||+|||+|+|+|++||+||+.|.+.+.++.+||++|+||++||||++
T Consensus 2 ~~~~~~~a~~~~~~~~~----~~~~~~gpL~GvPiaVKD~~~v~G~~Tt~GS~~~~~~~~~~~~dA~vV~rL~~AGAiil 77 (422)
T PLN02722 2 ATNPDYGAFMEKFVLSP----TSSSHDLPLHGLTFAVKDIFDVEGYVTGFGNPDWARTHSAATSTAPAVLAVLRGGATCV 77 (422)
T ss_pred CcCCCCCcceeeccccC----CCCCCCCCCCCCeEEEEcccccCCCccCCCCHHHHhcCCCCCCChHHHHHHHHCCCEEE
Confidence 35778999999864421 11246799999999999999999999999999887433467799999999999999999
Q ss_pred eecccccccccCCCCCCCCCCCCCCCCCCCCCCCCchHHHHHHHhcCCceeeccCCCCccchhhhhcccccccCCCCCcc
Q 007401 124 GKTVLDEFAFGITGENKHYGTPVNPQMPSHIPGGSSSGSAVAVAAQLVDFALGTDTIGCVRVPASFCGILGYRPSHGTVS 203 (605)
Q Consensus 124 GKt~~~e~~~~~~~~n~~~G~~~NP~~~~~~~GGSSgGsaaaVAag~~~~a~GtD~gGSiR~PAa~~Gv~GlkPt~G~v~ 203 (605)
||||||||+++.+|+|++||+|+||||++|+|||||||||||||+|++|+|+|||||||||+|||||||||||||+||||
T Consensus 78 GKTn~~Efa~~~~g~n~~~G~t~NP~~~~r~pGGSSsGSAaAVAaG~~p~AlGtDtgGSIRiPAa~cGvvG~KPT~G~vp 157 (422)
T PLN02722 78 GKTIMDEMAYSINGENAHYGTPTNPIAPDRVPGGSSSGSAVAVGAKLVDFSLGTDTGGSVRVPASYCGIFGFRPSHGAVS 157 (422)
T ss_pred EEechhhHhhCCCCCCCCCCCCCCCCCCCCCCCcCcHHHHHHHHcCCCceEeecCCCcccccChhHcceEEEecCCCccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCccCCCCCccccccccCHHHHHHHHHHHccCCCCCcccCceeeeccchhhhcCCchhhHHHHHHHHHHHHhCCCC-C
Q 007401 204 MIGVLPNSQSLDTVGLLARNASILHRVGHVLLQLNAVEPRRARRLIFADDIFQLSKVPKLKTIHVISKAIESLSGYQN-P 282 (605)
Q Consensus 204 ~~G~~p~~~~~d~~G~~ar~~~d~~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~~l~g~~~-~ 282 (605)
+.|++|+++++|++|||+|+++|++.+++++.+.+..+...+.++.+..+.+.......+++.+.+.++++.+.+.+. +
T Consensus 158 ~~G~~pla~sld~~G~~ar~v~D~a~~~~~l~g~~~~d~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~v 237 (422)
T PLN02722 158 TVGVIPMAQSFDTVGWFARDPVILKRVGHVLLQQPDVNPIKPSQIIIAEDCFQLSSIPHDRLVQVLVKSVEKLFGGGDIV 237 (422)
T ss_pred CCCCCcccCCCCcccceeCCHHHHHHHHHHHcCCCCCCCcCCceEEechhhhhhcccccHHHHHHHHHHHHHHhcCCCee
Confidence 999999999999999999999999999999987665555556677776554321122235677788888887765432 2
Q ss_pred ccccccccccccCcchhhhhhcC-CCCCCchhHHHHHHHHHHHhhhhhhHhhHHHHHHhcCCCCChhHHHHHHHHhcCCH
Q 007401 283 EHMNVGQYIASNVPSLKGLRAQS-TSPENGTATLKALSSVMLSLQRYEFKTIYEEWVKSAKPRLGYNVFERVLEAINTTQ 361 (605)
Q Consensus 283 ~~~~l~~~v~~~~p~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 361 (605)
+..++...++...+.+..+...+ ...+...+.+..+...+..+..+|+...+..+++..+..+++.++.+++.+..++.
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~s~ 317 (422)
T PLN02722 238 KHVNLGDYVEDKVPSLKHFMSKEIKEQEYNIPSLAALSSAMRLLQRYEFKINHGEWITAVKPEFGPGISERIWEAVRTTE 317 (422)
T ss_pred eecchhHHHHHhHHHHHHHhhcccccceecchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhCCHHHHHHHHHhccCCH
Confidence 22223222222223232221111 01111122233333444456666777788888887778899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCcEEEEeCCCCCCccCCcccccchhhhhchhhhcccccccCCceeeeecccCCCCCc
Q 007401 362 DNIKILYKVRNEMRAALQRLLKDDKILVIPTVSDPPLKLNTKKTYSAEFHDRTLVLSSIGSMSGCCQVAIPIGKYNEHPI 441 (605)
Q Consensus 362 ~~~~~a~~~r~~~~~~~~~~~~~~Dvll~Pt~~~~ap~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~G~~~glp~ 441 (605)
.+|.++++.|.++++.+.++|+++|+||+||+|.+||+++........+...++.+|.++|++|+|++|||+|..+|+|+
T Consensus 318 ~~y~~a~~~r~~~~~~~~~~~~~~D~Ll~Pt~p~~ap~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~~~glPv 397 (422)
T PLN02722 318 EKIDACQSVKTELRAALTTLLGEFGVLVIPTVPGPPPKLQADPTTLESFRARAFSLLSIAGVSGFCQVSIPLGLHDNLPV 397 (422)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCCCCcccCcchHHHHHHHHHHhhhcccccCCCEEEEeCCCCCCCCE
Confidence 99999999999999999999999999999999999998874322222333355668999999999999999999899999
Q ss_pred eeEEeeccCCchhHHhHHHHHHh
Q 007401 442 SISFITYHGGDKFLLDTVLDLYD 464 (605)
Q Consensus 442 g~~~~~~~~~d~~ll~~a~~l~~ 464 (605)
|+|+++++++|..+++++..+..
T Consensus 398 Glqivg~~~~D~~lL~~a~~l~~ 420 (422)
T PLN02722 398 SVSLLAKHGSDGFLLNLVESLYG 420 (422)
T ss_pred EEEEECCCCChHHHHHHHHHHHh
Confidence 99999999999999999988765
No 3
>TIGR02715 amido_AtzE amidohydrolase, AtzE family. Members of this protein family are aminohydrolases related to, but distinct from, glutamyl-tRNA(Gln) amidotransferase subunit A. The best characterized member is the biuret hydrolase of Pseudomonas sp. ADP, which hydrolyzes ammonia from the three-nitrogen compound biuret to yield allophanate. Allophanate is also an intermediate in urea degradation by the urea carboxylase/allophanate hydrolase pathway, an alternative to urease.
Probab=100.00 E-value=1.9e-88 Score=718.74 Aligned_cols=407 Identities=25% Similarity=0.363 Sum_probs=336.7
Q ss_pred hhHHHHHHHHHhhcCcccCCCCcCceeeecccCCCCCCC-------CCCCCCCCCCceEEEeeccCCCCcccCCCchhhh
Q 007401 27 GFVVLAETLRRRRNPKLNGRVDFGAFLERFELIPFPQPP-------PPAARQPLAGLKFAIKDVFDVKGYVTGFGSPDWK 99 (605)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~a~~~a~-------~~~~~gpL~Gvp~~vKD~~~~~G~~tt~Gs~~~~ 99 (605)
+.+|++|+++.+++||++.||.+|||++..+++++++|+ .+...||||||||+|||||+++|++||+||+.+.
T Consensus 12 g~~s~~ev~~~~l~ri~~~~~~lna~~~~~~~~al~~A~~~d~~~~~g~~~gpL~GvPv~vKD~~~v~G~~tt~Gs~~~~ 91 (452)
T TIGR02715 12 GRVSARAVAEATLARINQADGGLNAFTAVTAERALADAARIDADLAAGSPLGPLAGVPFAVKNLFDVAGLTTLAGAKINR 91 (452)
T ss_pred CCCCHHHHHHHHHHHHHHHCCCccEEEEeCHHHHHHHHHHHHHHHHCCCCCCCcCCCeEEEEeccccCCceeCcCChhhc
Confidence 449999999999999999999999999998887766553 3556799999999999999999999999999987
Q ss_pred hcCCCC-CCChHHHHHHHhCCCeEeeecccccccccCCCCCCCCCCCCCCCCCCCCCCCCchHHHHHHHhcCCceeeccC
Q 007401 100 RDHHEA-ERTAVVVTLLLKNGATCIGKTVLDEFAFGITGENKHYGTPVNPQMPSHIPGGSSSGSAVAVAAQLVDFALGTD 178 (605)
Q Consensus 100 ~~~~~~-~~da~~V~rL~~aGai~~GKt~~~e~~~~~~~~n~~~G~~~NP~~~~~~~GGSSgGsaaaVAag~~~~a~GtD 178 (605)
+ .++ .+||++|+||++||||++||||||||+++.+|+|++||+|+||||++|+|||||||||||||+|++++|+|||
T Consensus 92 ~--~~p~~~dA~vV~rL~~AGAii~GkTn~~Ef~~~~~~~n~~~G~t~NP~~~~~~~GGSSgGsAaaVAag~~~~alGtD 169 (452)
T TIGR02715 92 D--LAPAKRDATLVQRLSAAGAVLVGALNMDEFAYGFTTENAHYGPTRNPHDLTRIAGGSSGGSAAAVAAGLVPFSLGSD 169 (452)
T ss_pred c--CCCCCCCHHHHHHHHHCCCEEEEeccCHhhhcCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHCCCCceEEeeC
Confidence 5 455 6999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccchhhhhcccccccCCCCCccCCCCccCCCCCccccccccCHHHHHHHHHHHccCCCCCc----------------
Q 007401 179 TIGCVRVPASFCGILGYRPSHGTVSMIGVLPNSQSLDTVGLLARNASILHRVGHVLLQLNAVEP---------------- 242 (605)
Q Consensus 179 ~gGSiR~PAa~~Gv~GlkPt~G~v~~~G~~p~~~~~d~~G~~ar~~~d~~~v~~~~~~~~~~~~---------------- 242 (605)
||||||||||||||||||||+||||+.|++|+++++|++|||+||++|++.+++++.+.+..+.
T Consensus 170 tgGSiRiPAa~cGv~GlKPT~Grvs~~G~~~~~~s~d~~Gp~arsv~D~a~~l~~l~g~~~~d~~~~~~p~~~~~~~~~~ 249 (452)
T TIGR02715 170 TNGSIRVPASLCGVFGLKPTYGRLSRQGVFPFVASLDHVGPFARSVEDLALAYDVMQGPDPQDPFCTDRPAEPTVPLLPA 249 (452)
T ss_pred CCCcchhhHHHhCceeeeCCCCCccCCCCCCCccccCcccCeeCCHHHHHHHHHHhcCCCCCCcccccCCCcchhhhhhc
Confidence 9999999999999999999999999999999999999999999999999999999886432211
Q ss_pred -ccCceeeeccchhhhcCCchhhHHHHHHHHHHHHhCCCCCccccccccccccCcchhhhhhcCCCCCCchhHHHHHHHH
Q 007401 243 -RRARRLIFADDIFQLSKVPKLKTIHVISKAIESLSGYQNPEHMNVGQYIASNVPSLKGLRAQSTSPENGTATLKALSSV 321 (605)
Q Consensus 243 -~~~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~~l~g~~~~~~~~l~~~v~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (605)
.++.++.+..+.+ ....++++.++++++++.|.... .+ ..|..... ...
T Consensus 250 ~~~~lrig~~~~~~--~~~~~~~v~~a~~~a~~~L~~~~---------~v--~~~~~~~~-----------------~~~ 299 (452)
T TIGR02715 250 GISGLRIAVLGGWF--QQNADPEALAAVGRVAKALGATT---------IV--ELPDAERA-----------------RAA 299 (452)
T ss_pred CCCCCEEEEECccc--cCCCCHHHHHHHHHHHHhcCCee---------ee--cCCchHHH-----------------HHH
Confidence 1223555554433 12246788999999988873211 11 12221110 011
Q ss_pred HHHhhhhhhHhhHHHHHHhcCCCCChhHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEeCCCCCCccCC
Q 007401 322 MLSLQRYEFKTIYEEWVKSAKPRLGYNVFERVLEAINTTQDNIKILYKVRNEMRAALQRLLKDDKILVIPTVSDPPLKLN 401 (605)
Q Consensus 322 ~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~a~~~r~~~~~~~~~~~~~~Dvll~Pt~~~~ap~~~ 401 (605)
+..+...+....+..+++...+.+++.++.++..+..++..+|.++++.|+.+++.+.++|+++|+||+||+|.+||+++
T Consensus 300 ~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~r~~~~~~~~~~~~~~Dvll~Pt~~~~ap~~~ 379 (452)
T TIGR02715 300 AFVITASEGGNLHLDALRTRPQDFDPATRDRLLAGALLPASWYAQAQRFRHWFRDAIRELFQRVDVLIAPATPCSAPLIG 379 (452)
T ss_pred HHHHHHHHHHHHHHHHhhhchhhcCHHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHhcCCEEEeCCCCCCCCcCc
Confidence 11222334444455566556677899999999988889999999999999999999999999999999999999999987
Q ss_pred cccc--c--chhhhhchhhhcccccccCCceeeeecccCCCCCceeEEeeccCCchhHHhHHHHHHhH
Q 007401 402 TKKT--Y--SAEFHDRTLVLSSIGSMSGCCQVAIPIGKYNEHPISISFITYHGGDKFLLDTVLDLYDS 465 (605)
Q Consensus 402 ~~~~--~--~~~~~~~~~~~t~~~nl~G~PaisvP~G~~~glp~g~~~~~~~~~d~~ll~~a~~l~~~ 465 (605)
.... . ...+...+..||.+||++|+|++|||+|..+|+|+|+|+++++++|..+|+++..+++.
T Consensus 380 ~~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~~~glPvGlQivg~~~~D~~lL~~a~~le~~ 447 (452)
T TIGR02715 380 QETMIIDGVPVPVRANLGIFTQPISFAGLPVLAAPLPRPGRLPIGVQLIAAPWREDLCLRAAAVLERQ 447 (452)
T ss_pred ccccccCccchhhhhhHHhcCccchhcCCCeEEEeCCCCCCCCeEEEEECCCCCHHHHHHHHHHHHHh
Confidence 5211 1 11111233458999999999999999999899999999999999999999999998864
No 4
>PRK09201 amidase; Provisional
Probab=100.00 E-value=2.7e-88 Score=719.26 Aligned_cols=406 Identities=26% Similarity=0.360 Sum_probs=336.7
Q ss_pred hhHHHHHHHHHhhcCcccCCCCcCceeeecccCCCCCCC-------CCCCCCCCCCceEEEeeccCCCCcccCCCchhhh
Q 007401 27 GFVVLAETLRRRRNPKLNGRVDFGAFLERFELIPFPQPP-------PPAARQPLAGLKFAIKDVFDVKGYVTGFGSPDWK 99 (605)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~a~~~a~-------~~~~~gpL~Gvp~~vKD~~~~~G~~tt~Gs~~~~ 99 (605)
+.+|++|+++.+++||++.|+.+|||++..+++++++|+ .+...||||||||+|||+|+++|++||+||+.+.
T Consensus 19 g~~t~~ev~~~~l~ri~~~~~~lna~~~~~~d~al~~A~~~d~~~~~g~~~gpL~GvPi~vKD~~~v~G~~tt~Gs~~~~ 98 (465)
T PRK09201 19 GELSARAVAQATLARIARANPQLNAFTAVTAERALAEAARIDAARAAGEPLGPLAGVPFAVKNLFDVAGLTTLAGSKINR 98 (465)
T ss_pred CCCCHHHHHHHHHHHHHHhCCCceEEEEcCHHHHHHHHHHHHHHHHcCCCCCCcCCceEEEEeccccCCcccCcCChhhc
Confidence 449999999999999999999999999998887766553 3556799999999999999999999999999987
Q ss_pred hcCCCC-CCChHHHHHHHhCCCeEeeecccccccccCCCCCCCCCCCCCCCCCCCCCCCCchHHHHHHHhcCCceeeccC
Q 007401 100 RDHHEA-ERTAVVVTLLLKNGATCIGKTVLDEFAFGITGENKHYGTPVNPQMPSHIPGGSSSGSAVAVAAQLVDFALGTD 178 (605)
Q Consensus 100 ~~~~~~-~~da~~V~rL~~aGai~~GKt~~~e~~~~~~~~n~~~G~~~NP~~~~~~~GGSSgGsaaaVAag~~~~a~GtD 178 (605)
+ .++ .+||++|+|||+||||++||||||||+++.+|+|++||+|+||||++|+|||||||||||||+|++|+|+|||
T Consensus 99 ~--~~~~~~dA~vV~~Lr~aGAii~GKTn~~Efa~~~~~~n~~~G~t~NP~~~~~~pGGSSgGsAaaVAaG~~~~alGtD 176 (465)
T PRK09201 99 D--RPPATRDATAVRRLEAAGAVLVGALNMDEYAYGFTTENSHYGATRNPHDLTRIAGGSSGGSAAAVAAGLVPFTLGSD 176 (465)
T ss_pred c--CCCCCCChHHHHHHHHCCCEEEEecChHHHhcCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHcCCCceEEecC
Confidence 5 455 6999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccchhhhhcccccccCCCCCccCCCCccCCCCCccccccccCHHHHHHHHHHHccCCCCCc----------------
Q 007401 179 TIGCVRVPASFCGILGYRPSHGTVSMIGVLPNSQSLDTVGLLARNASILHRVGHVLLQLNAVEP---------------- 242 (605)
Q Consensus 179 ~gGSiR~PAa~~Gv~GlkPt~G~v~~~G~~p~~~~~d~~G~~ar~~~d~~~v~~~~~~~~~~~~---------------- 242 (605)
||||||+|||||||||||||+||||+.|++|+++++|++|||+|+++|++.+++++.+.+..+.
T Consensus 177 tgGSIRiPAa~cGv~G~KPT~Grvs~~G~~~~~~s~d~~Gp~arsv~D~a~~l~~l~g~d~~d~~~~~~~~~~~~~~~~~ 256 (465)
T PRK09201 177 TNGSIRVPASLCGIFGLKPTYGRLSRAGSFPFVASLDHIGPFARSVADLALVYDVLQGPDPQDPFQADRPAEPTAPLLDR 256 (465)
T ss_pred CCCcchhhhHHhCceeeeCCCCccCCCCCCCcccccCcccCccCCHHHHHHHHHHhcCCCCCCcccccCCCcchhhhhcc
Confidence 9999999999999999999999999999999999999999999999999999999986532211
Q ss_pred -ccCceeeeccchhhhcCCchhhHHHHHHHHHHHHhCCCCCccccccccccccCcchhhhhhcCCCCCCchhHHHHHHHH
Q 007401 243 -RRARRLIFADDIFQLSKVPKLKTIHVISKAIESLSGYQNPEHMNVGQYIASNVPSLKGLRAQSTSPENGTATLKALSSV 321 (605)
Q Consensus 243 -~~~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~~l~g~~~~~~~~l~~~v~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (605)
.++.++.+..+.+ ....++++.++++++++.|..... + ..|..... ...
T Consensus 257 ~~~~lrig~~~~~~--~~~~~~~v~~a~~~a~~~L~~~~~---------v--~~~~~~~~-----------------~~~ 306 (465)
T PRK09201 257 GAEGLRIAVLGGYF--AQWADPEARAAVDRVAKALGATRE---------V--ELPEAARA-----------------RAA 306 (465)
T ss_pred CCCCCEEEEECccc--cCCCCHHHHHHHHHHHHHccCcee---------e--cCCchhHH-----------------HHH
Confidence 1123555554433 122467899999999888732110 1 11221100 011
Q ss_pred HHHhhhhhhHhhHHHHHHhcCCCCChhHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEeCCCCCCccCC
Q 007401 322 MLSLQRYEFKTIYEEWVKSAKPRLGYNVFERVLEAINTTQDNIKILYKVRNEMRAALQRLLKDDKILVIPTVSDPPLKLN 401 (605)
Q Consensus 322 ~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~a~~~r~~~~~~~~~~~~~~Dvll~Pt~~~~ap~~~ 401 (605)
+..+...|....+..+++.....+++.++.++..+..++..+|.++++.|..+++.+.++|+++|+||+||+|.+||+++
T Consensus 307 ~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~r~~~~~~~~~~~~~~D~ll~Pt~~~~ap~~~ 386 (465)
T PRK09201 307 AFIITASEGGNLHLPALRTRPQDFDPASRDRLLAGAMLPAAWYVQAQRFRRWFRQAVLELFEHVDVLIAPATPCSAPLIG 386 (465)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhcCHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHhcCCEEEeCCCCCCCCccc
Confidence 11222334444555565555667899999999999889999999999999999999999999999999999999999987
Q ss_pred cccc---c-chhhhhchhhhcccccccCCceeeeecccCCCCCceeEEeeccCCchhHHhHHHHHHh
Q 007401 402 TKKT---Y-SAEFHDRTLVLSSIGSMSGCCQVAIPIGKYNEHPISISFITYHGGDKFLLDTVLDLYD 464 (605)
Q Consensus 402 ~~~~---~-~~~~~~~~~~~t~~~nl~G~PaisvP~G~~~glp~g~~~~~~~~~d~~ll~~a~~l~~ 464 (605)
+... . ...+...+..||.+||++|+|++|||+|..+|+|+|+|+++++++|..+|+++..+++
T Consensus 387 ~~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~~~GlPvGlQivg~~~~D~~lL~~A~~le~ 453 (465)
T PRK09201 387 QETMRIDGVELPVRANLGILTQPISFIGLPVVAVPLRTPGGLPIGVQLIAAPWREDLALRAAAALEQ 453 (465)
T ss_pred ccccccCcchhhhhhhHHHhCccccccCCCeEEEeCCCCCCcCeEEEEECCCCCHHHHHHHHHHHHh
Confidence 5321 0 1111223445899999999999999999889999999999999999999999999876
No 5
>PRK06102 hypothetical protein; Provisional
Probab=100.00 E-value=2.1e-87 Score=709.94 Aligned_cols=413 Identities=30% Similarity=0.399 Sum_probs=334.9
Q ss_pred hhHHHHHHHHHhhcCcccCCCCcCceeeecccCCCCCCC-------CCCCCCCCCCceEEEeeccCCCCcccCCCchhhh
Q 007401 27 GFVVLAETLRRRRNPKLNGRVDFGAFLERFELIPFPQPP-------PPAARQPLAGLKFAIKDVFDVKGYVTGFGSPDWK 99 (605)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~a~~~a~-------~~~~~gpL~Gvp~~vKD~~~~~G~~tt~Gs~~~~ 99 (605)
+.+|++|+++.+++||++.|+ +|||++..+++++++|+ .+..+||||||||+|||+|+|+|++||+||+.+.
T Consensus 18 g~~s~~ev~~~~l~ri~~~~~-~na~~~~~~~~al~~A~~~d~~~~~g~~~gpL~GvPi~vKD~~~v~G~~tt~Gs~~~~ 96 (452)
T PRK06102 18 GALDPVQVAEQALDAIASYAD-QAVFISLTEERAMREAEASSARWRAGRSLGLLDGIPIAWKDLFDVAGSVTTAGSVVLA 96 (452)
T ss_pred CCCCHHHHHHHHHHHHHhhCC-CCEEEEeCHHHHHHHHHHHHHHHHCCCCCCCcCCCeEEEEeccccCCCccCcCChhhc
Confidence 449999999999999999986 89999998877666553 3556799999999999999999999999999987
Q ss_pred hcCCCCCCChHHHHHHHhCCCeEeeecccccccccCCCCCCCCCCCCCCCCC--CCCCCCCchHHHHHHHhcCCceeecc
Q 007401 100 RDHHEAERTAVVVTLLLKNGATCIGKTVLDEFAFGITGENKHYGTPVNPQMP--SHIPGGSSSGSAVAVAAQLVDFALGT 177 (605)
Q Consensus 100 ~~~~~~~~da~~V~rL~~aGai~~GKt~~~e~~~~~~~~n~~~G~~~NP~~~--~~~~GGSSgGsaaaVAag~~~~a~Gt 177 (605)
+ +.++.+||++|+||++|||||+||||||||+++.+|+|++||+|+||||+ +|+|||||||||||||+|++|+++||
T Consensus 97 ~-~~~~~~dA~vV~rL~~aGAii~GKTn~~E~a~~~~~~n~~~G~t~NP~~~~~~~~~GGSSgGsAaaVAaG~~~~alGt 175 (452)
T PRK06102 97 N-AAPASRDAAVVALLARAGMVSIGRTNMSEFAFSGLGLNPHYGTPVNPRSTDVPRIPGGSSSGSAVAVAAGLVPVAMGT 175 (452)
T ss_pred c-CCCCCCCHHHHHHHHHCCCEEEEeechHhHhcCCCCCCCCCCCCCCCCCCCCCcCCCCCcHHHHHHHHcCCCceEEec
Confidence 5 23347999999999999999999999999999999999999999999996 79999999999999999999999999
Q ss_pred CCCCccchhhhhcccccccCCCCCccCCCCccCCCCCccccccccCHHHHHHHHHHHccCCCCCc----ccCceeeeccc
Q 007401 178 DTIGCVRVPASFCGILGYRPSHGTVSMIGVLPNSQSLDTVGLLARNASILHRVGHVLLQLNAVEP----RRARRLIFADD 253 (605)
Q Consensus 178 D~gGSiR~PAa~~Gv~GlkPt~G~v~~~G~~p~~~~~d~~G~~ar~~~d~~~v~~~~~~~~~~~~----~~~~~l~~~~~ 253 (605)
||||||||||+||||||||||+||||+.|++|+++++|++|||+||++|++.+++++.+.+..+. ..+.++.+..+
T Consensus 176 DtgGSiRiPAa~cGv~G~KPT~G~v~~~G~~~~~~s~d~~Gp~arsv~D~a~~~~~l~g~~~~~~~~~~~~~~ri~~~~~ 255 (452)
T PRK06102 176 DTGGSVRIPAAFNGLVGYKATRGRYSMDGVFPLAKSLDSLGPLCRSVRDAVWIDAAMRGLTAPDVVRRPLAGLRLVVPET 255 (452)
T ss_pred CCCCcchhhhHHhCceeEecCCCcccCCCCcccccccCcccCccCCHHHHHHHHHHHcCCCCccccccCCCCCEEEEecc
Confidence 99999999999999999999999999999999999999999999999999999998876532221 12234555444
Q ss_pred hhhhcCCchhhHHHHHHHHHHHHhCCCCCcccccccccc-ccCcchhhhhhcCCCCCCchhHHHHHHHHHHHhhhhhhHh
Q 007401 254 IFQLSKVPKLKTIHVISKAIESLSGYQNPEHMNVGQYIA-SNVPSLKGLRAQSTSPENGTATLKALSSVMLSLQRYEFKT 332 (605)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~a~~~l~g~~~~~~~~l~~~v~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~e~~~ 332 (605)
.+ ....++++.+.+.++++.|+..+. .|+ ...|.+.+... ....+..+...|...
T Consensus 256 ~~--~~~~~~~v~~~~~~a~~~L~~~G~--------~v~~~~~~~~~~~~~--------------~~~~~~~~~~~e~~~ 311 (452)
T PRK06102 256 VV--FDDAEPGVRAAFEAAVERLQAAGA--------LVERQAFPAFQEILD--------------LIARHGWLVTAEAFA 311 (452)
T ss_pred hh--cccCCHHHHHHHHHHHHHHHhCCC--------EEEecCCccHHHHHH--------------HHHHHHHHHHHHHHH
Confidence 32 123467899999999998864332 222 12333321110 000111122234444
Q ss_pred hHHHHHHh-cCCCCChhHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEeCCCCCCccCCcccccchhh-
Q 007401 333 IYEEWVKS-AKPRLGYNVFERVLEAINTTQDNIKILYKVRNEMRAALQRLLKDDKILVIPTVSDPPLKLNTKKTYSAEF- 410 (605)
Q Consensus 333 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~s~~~~~~a~~~r~~~~~~~~~~~~~~Dvll~Pt~~~~ap~~~~~~~~~~~~- 410 (605)
.+..++.. ....+++.++.+++.+..++..+|.++++.|.++++.+.++|+ +|+||+||+|.+||++++.......+
T Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~r~~~~~~~~~~~~-~D~ll~Pt~~~~ap~~~~~~~~~~~~~ 390 (452)
T PRK06102 312 LHQERLDGPDAARMDPRVVKRTRLGRKITASDYIALLEARERLIAQVTRELG-GALLATPTVAHVAPPLAPLEADDDLFF 390 (452)
T ss_pred HHHHHhhccchhhCCHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHc-CCEEEeCCCCCCCCCccccccCchhhh
Confidence 45454443 3456889999999988889999999999999999999999999 89999999999999987522111111
Q ss_pred --hhchhhhcccccccCCceeeeecccC-CCCCceeEEeeccCCchhHHhHHHHHHhHH
Q 007401 411 --HDRTLVLSSIGSMSGCCQVAIPIGKY-NEHPISISFITYHGGDKFLLDTVLDLYDSL 466 (605)
Q Consensus 411 --~~~~~~~t~~~nl~G~PaisvP~G~~-~glp~g~~~~~~~~~d~~ll~~a~~l~~~~ 466 (605)
...++.||.+||++|+|++|||+|.. +|+|+|+|+++++++|..+++++..+++.+
T Consensus 391 ~~~~~~~~~t~~~nl~g~PaisvP~g~~~~glPvGlQivg~~~~D~~lL~~a~~le~~l 449 (452)
T PRK06102 391 ATNLKTLRNTMPGNFLDMCGVSLPCGTGAAGMPVGLLLSAPAGRDERLLRAALAVEAVI 449 (452)
T ss_pred hhhhhhhhcCccccccCCCeEEEecCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHh
Confidence 12334589999999999999999987 899999999999999999999999998755
No 6
>PRK06169 putative amidase; Provisional
Probab=100.00 E-value=2.5e-87 Score=712.88 Aligned_cols=416 Identities=19% Similarity=0.221 Sum_probs=335.6
Q ss_pred HHHHhhh-----hHHHHHHHHHhhcCcccCCCCcCceeeecccCCCCCCC-------CCCCCCCCCCceEEEeeccCCCC
Q 007401 21 IGVSVVG-----FVVLAETLRRRRNPKLNGRVDFGAFLERFELIPFPQPP-------PPAARQPLAGLKFAIKDVFDVKG 88 (605)
Q Consensus 21 ~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~a~~~a~-------~~~~~gpL~Gvp~~vKD~~~~~G 88 (605)
++.+|+. .+|++|+++.+++||++.||.+|||++..+++++++|+ .+..+||||||||+|||||+|+|
T Consensus 8 ~~~~l~~~l~~g~~t~~ev~~~~l~ri~~~~~~lna~~~~~~~~al~~A~~~d~~~~~g~~~gpL~GvPi~vKD~~~v~G 87 (466)
T PRK06169 8 TAVELLAAYRRGELSPVEATQAVLDRIDRRDPAVNAFCLVDAEGALAAARASEERWRRGEPCGLLDGVPVSIKDIFLTRG 87 (466)
T ss_pred CHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCCCEEEEeCHHHHHHHHHHHHHHHhcCCCCCCcCCceEEEecccccCC
Confidence 5555553 39999999999999999999999999998877665543 34567999999999999999999
Q ss_pred cccCCCchhhhhcCCCCCCChHHHHHHHhCCCeEeeecccccccccCCCCCCCCCCCCCCCCCCCCCCCCchHHHHHHHh
Q 007401 89 YVTGFGSPDWKRDHHEAERTAVVVTLLLKNGATCIGKTVLDEFAFGITGENKHYGTPVNPQMPSHIPGGSSSGSAVAVAA 168 (605)
Q Consensus 89 ~~tt~Gs~~~~~~~~~~~~da~~V~rL~~aGai~~GKt~~~e~~~~~~~~n~~~G~~~NP~~~~~~~GGSSgGsaaaVAa 168 (605)
++||+||+.+.+ +.++.+||++|+|||+||||++||||||||+++.+|+|++||+|+||||++|+|||||||||||||+
T Consensus 88 ~~tt~Gs~~~~~-~~p~~~da~vV~~Lr~aGAii~GKTn~~E~a~~~~~~n~~~G~t~NP~~~~~~~GGSSgGsAaaVAa 166 (466)
T PRK06169 88 WPTLRGSRAIDA-DGPWDVDAPAVARLREAGAVLLGKTTTPEFGWKGVTDSPLYGITRNPWDTRLTAGGSSGGAAAAVAL 166 (466)
T ss_pred cccCccChhhcc-CCCCCCCHHHHHHHHHCCCEEEEecCchHhhcCCCCCCCCCCCCCCCCCCCCCCCcCcHHHHHHHHc
Confidence 999999999874 3455799999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCceeeccCCCCccchhhhhcccccccCCCCCccCCCCccCCCCCccccccccCHHHHHHHHHHHccCCCCCc------
Q 007401 169 QLVDFALGTDTIGCVRVPASFCGILGYRPSHGTVSMIGVLPNSQSLDTVGLLARNASILHRVGHVLLQLNAVEP------ 242 (605)
Q Consensus 169 g~~~~a~GtD~gGSiR~PAa~~Gv~GlkPt~G~v~~~G~~p~~~~~d~~G~~ar~~~d~~~v~~~~~~~~~~~~------ 242 (605)
|++|+|+|||||||||+|||||||||||||+||||+.|+.|.+ ++|++|||+|+++|++.+++++.+.+..+.
T Consensus 167 G~~~~alGtDtgGSiRiPAa~cGv~G~KPT~G~vs~~g~~~~~-~~d~~Gp~arsv~D~~~~~~~l~g~~~~d~~~~~~~ 245 (466)
T PRK06169 167 GMGPLSVGTDGGGSVRIPASFCGTFGFKPTFGRVPLYPASPFG-TLAHVGPMTRTVADAALLLDVIARPDARDWSALPPP 245 (466)
T ss_pred CCCceeeecCCCCcchhchHhhCceeecCCCCccCCCCCCCCc-cccccCCeeCCHHHHHHHHHHhcCCCCCCCcccCCC
Confidence 9999999999999999999999999999999999999998886 899999999999999999999876432110
Q ss_pred -----------ccCceeeeccchhhhcCCchhhHHHHHHHHHHHHhCCCCCccccccccccccCcchhhhhhcCCCCCCc
Q 007401 243 -----------RRARRLIFADDIFQLSKVPKLKTIHVISKAIESLSGYQNPEHMNVGQYIASNVPSLKGLRAQSTSPENG 311 (605)
Q Consensus 243 -----------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~~l~g~~~~~~~~l~~~v~~~~p~~~~~~~~~~~~~~~ 311 (605)
.++.++.+..+.. ....++++.++++++++.|+..+ +.|++..+++....
T Consensus 246 ~~~~~~~~~~~~~~lrig~~~~~~--~~~~~~~v~~a~~~a~~~L~~~G--------~~v~~~~~~~~~~~--------- 306 (466)
T PRK06169 246 TTSFLDALDRDVRGLRIAYSPTLG--YVDVDPEVAALVAQAVQRLAALG--------ARVEEVDPGFSDPV--------- 306 (466)
T ss_pred CcchhhhhccCCCCCEEEEECCcC--CCCCCHHHHHHHHHHHHHHHHcC--------CEEEEeCCCcchHH---------
Confidence 1223555543322 12246789999999999986333 22221112211100
Q ss_pred hhHHHHHHHHHHHhhhhhhHhhHHHHHHhcCCCCChhHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEe
Q 007401 312 TATLKALSSVMLSLQRYEFKTIYEEWVKSAKPRLGYNVFERVLEAINTTQDNIKILYKVRNEMRAALQRLLKDDKILVIP 391 (605)
Q Consensus 312 ~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~a~~~r~~~~~~~~~~~~~~Dvll~P 391 (605)
..+..+...+....+..+.......+++.++.+++.+..++..+|.++.+.|+.+++.|.++|+++|+||+|
T Consensus 307 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~r~~~~~~~~~~~~~~D~ll~P 378 (466)
T PRK06169 307 --------EAFHVLWFAGAARLLRALPPGQRALLDPGLRRIAERGATYSASDYLDATAVRAALGARMGAFHERYDLLLTP 378 (466)
T ss_pred --------HHHHHHHHHHHHHHHHHhhhcchhhcCHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHhcCCEEEeC
Confidence 011111111222233333333445688999999999999999999999999999999999999999999999
Q ss_pred CCCCCCccCCcccccc--hhhhhchhhhcccccccCCceeeeecccC-CCCCceeEEeeccCCchhHHhHHHHHHhH
Q 007401 392 TVSDPPLKLNTKKTYS--AEFHDRTLVLSSIGSMSGCCQVAIPIGKY-NEHPISISFITYHGGDKFLLDTVLDLYDS 465 (605)
Q Consensus 392 t~~~~ap~~~~~~~~~--~~~~~~~~~~t~~~nl~G~PaisvP~G~~-~glp~g~~~~~~~~~d~~ll~~a~~l~~~ 465 (605)
|+|.+||+++...... ......+..||.++|++|+|++|||+|.. +|+|+|+|+++++++|..|++++..+++.
T Consensus 379 t~~~~ap~~~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~~~~GlPvGlQlvg~~~~d~~lL~~a~~le~~ 455 (466)
T PRK06169 379 TLPIPAFEAGHDVPPGSGLTDWTQWTPFTYPFNLTQQPAASVPCGFTAAGLPVGLQIVGPRHSDDLVLRVARAYEQA 455 (466)
T ss_pred CCCCCCCCCCccCCCccchhhhhhhhcccccccccCCCeEEEecCcCCCCCceEEEEecCCCcHHHHHHHHHHHHhh
Confidence 9999999987532111 11112334589999999999999999987 89999999999999999999999998774
No 7
>PRK07487 amidase; Provisional
Probab=100.00 E-value=3.4e-87 Score=711.61 Aligned_cols=421 Identities=20% Similarity=0.220 Sum_probs=336.3
Q ss_pred hHHHHHHHhhhh-----HHHHHHHHHhhcCcccCCCCcCceeeecccCCCCCCC-------CCCCCCCCCCceEEEeecc
Q 007401 17 VWVVIGVSVVGF-----VVLAETLRRRRNPKLNGRVDFGAFLERFELIPFPQPP-------PPAARQPLAGLKFAIKDVF 84 (605)
Q Consensus 17 ~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~a~~~a~-------~~~~~gpL~Gvp~~vKD~~ 84 (605)
++..|+.+|+.. +|++|+++.+++||++.|+.+|||++..+++++++|+ .+..+||||||||+|||+|
T Consensus 5 ~~~~~~~~l~~~l~~g~~t~~ev~~~~l~ri~~~~~~lna~~~~~~e~al~~A~~~d~~~~~g~~~gpL~GvPi~vKD~~ 84 (469)
T PRK07487 5 LWRLSAAELAAAVRSRDVSAREAAEAALARLDAVNPAINAVVDHRPEEALAQADAVDAARARGDDPGPLAGVPVTVKVNV 84 (469)
T ss_pred hhhCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHHCCCccEEEEeCHHHHHHHHHHhHHHHhcCCCCCCcCCCEEEEeccc
Confidence 344467776644 8999999999999999999999999998887766553 2456799999999999999
Q ss_pred CCCCcccCCCchhhhhcCCCCCCChHHHHHHHhCCCeEeeecccccccccCCCCCCCCCCCCCCCCCCCCCCCCchHHHH
Q 007401 85 DVKGYVTGFGSPDWKRDHHEAERTAVVVTLLLKNGATCIGKTVLDEFAFGITGENKHYGTPVNPQMPSHIPGGSSSGSAV 164 (605)
Q Consensus 85 ~~~G~~tt~Gs~~~~~~~~~~~~da~~V~rL~~aGai~~GKt~~~e~~~~~~~~n~~~G~~~NP~~~~~~~GGSSgGsaa 164 (605)
+|+|++||+||+.+.+ .++.+||++|+|||+||||++||||||||+++.+|+|++||+|+||||++|+||||||||||
T Consensus 85 ~v~G~~tt~Gs~~~~~--~~~~~da~vV~rLr~aGAii~GKTn~~Efa~~~~~~n~~~G~t~NP~d~~~~~GGSSgGsAa 162 (469)
T PRK07487 85 DQAGFATTNGVRLQKD--LIAPADSPVVDNLRKAGAVIIGRTNTPAFSYRWFTDNPLHGRTLNPWDPSLTPGGSSGGAAA 162 (469)
T ss_pred ccCCCccCcchHHhcC--CCCCCchHHHHHHHHCCCEEEEecChhhhhcCCCCCCCCCCCCCCCCCCCCCCCcchHHHHH
Confidence 9999999999999875 67889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCceeeccCCCCccchhhhhcccccccCCCCCccCCCCcc----C-CCCCccccccccCHHHHHHHHHHHccCCC
Q 007401 165 AVAAQLVDFALGTDTIGCVRVPASFCGILGYRPSHGTVSMIGVLP----N-SQSLDTVGLLARNASILHRVGHVLLQLNA 239 (605)
Q Consensus 165 aVAag~~~~a~GtD~gGSiR~PAa~~Gv~GlkPt~G~v~~~G~~p----~-~~~~d~~G~~ar~~~d~~~v~~~~~~~~~ 239 (605)
|||+|++|+|||||||||||||||||||||||||+||||+.|+++ + +.++|++|||+||++|++.+++++.+.+.
T Consensus 163 AVAaG~~~~alGtDtgGSIRiPAa~cGvvGlKPT~G~is~~g~~~~~~~l~~~~~~~~Gplarsv~D~a~~~~~l~g~d~ 242 (469)
T PRK07487 163 AVAAGIGAIAHGTDIGGSIRYPAYACGVHGLRPTLGRVPAYNASSPERPIGAQLMSVQGPLARTVADLRLALAAMAAPDP 242 (469)
T ss_pred HHHcCCCceeeecCCCCccccchhhcCceeecCCCCccCCCCCCccccccccccccccCCeeCCHHHHHHHHHHHhCCCC
Confidence 999999999999999999999999999999999999999999863 3 34789999999999999999999986543
Q ss_pred CCc----------ccCceeeeccchhhhcCCchhhHHHHHHHHHHHHhCCCCCccccccccccc--cCcchhhhhhcCCC
Q 007401 240 VEP----------RRARRLIFADDIFQLSKVPKLKTIHVISKAIESLSGYQNPEHMNVGQYIAS--NVPSLKGLRAQSTS 307 (605)
Q Consensus 240 ~~~----------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~~l~g~~~~~~~~l~~~v~~--~~p~~~~~~~~~~~ 307 (605)
.++ ..+.++.+..+.+. ...++++.+.++++++.|+..+ +.+++ ..|.+.+.
T Consensus 243 ~d~~~~~~~~~~~~~~lrig~~~~~~~--~~~~~~v~~a~~~a~~~L~~~G--------~~v~~~~~~~~~~~~------ 306 (469)
T PRK07487 243 RDPWWVPAPLEGPPRPKRVALCVRPDG--LDVDPEVEAALRDAARRLEDAG--------WTVEEVDDTPPLREA------ 306 (469)
T ss_pred CCCccCCCCccCCCCCcEEEEECCCCC--CCCCHHHHHHHHHHHHHHHHCC--------CEEEecCCCCchHHH------
Confidence 221 12345666544331 2246789999999999886333 22221 22332211
Q ss_pred CCCchhHHHHHHHHHHHhhhhhhHhhHHHHHHhc-CCCCChhHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHhCCCc
Q 007401 308 PENGTATLKALSSVMLSLQRYEFKTIYEEWVKSA-KPRLGYNVFERVLEAINTTQDNIKILYKVRNEMRAALQRLLKDDK 386 (605)
Q Consensus 308 ~~~~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~s~~~~~~a~~~r~~~~~~~~~~~~~~D 386 (605)
...+..+...+....+..+.... .+.+.+.+...++.+..++..+|.++++.|..+++.+.++|+++|
T Consensus 307 -----------~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~r~~~~~~~~~~~~~~D 375 (469)
T PRK07487 307 -----------AELQERLWLGDGYEALLAAAEAEGDPGALAALRGQRAKARPLDLAGYMNALARRATLTRQWQLFFEDYP 375 (469)
T ss_pred -----------HHHHHHHHHHHHHHHHHHHHHhhchhhhhHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 11112222233334444443332 234556666666777788999999999999999999999999999
Q ss_pred EEEEeCCCCCCccCCcccccchhhhh--chhhhcccccccCCceeeeecccCCCCCceeEEeeccCCchhHHhHHHHHHh
Q 007401 387 ILVIPTVSDPPLKLNTKKTYSAEFHD--RTLVLSSIGSMSGCCQVAIPIGKYNEHPISISFITYHGGDKFLLDTVLDLYD 464 (605)
Q Consensus 387 vll~Pt~~~~ap~~~~~~~~~~~~~~--~~~~~t~~~nl~G~PaisvP~G~~~glp~g~~~~~~~~~d~~ll~~a~~l~~ 464 (605)
+||+||+|.+||+++........+.. ....+|.++|++|+|++|||+|..+|||+|+|+++++++|..+++++..+++
T Consensus 376 ~ll~Pt~p~~a~~~~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~~~GlPvGlQlvg~~~~D~~lL~~a~~lE~ 455 (469)
T PRK07487 376 LLLMPVSAELPFPDDLDRQGAEGFRRVWEAQLPQIALPFMGLPGLSVPTGLVGGVPVGVQLVAGRFREDLCLAAGEAIEA 455 (469)
T ss_pred EEEcCCCCCCCCCCCCcCCchhhhhHHHHhhcccccccccCCCeEEEECccCCCcceeEEEeCCCCCHHHHHHHHHHHHH
Confidence 99999999999998743211112211 1112477899999999999999999999999999999999999999999987
Q ss_pred HH
Q 007401 465 SL 466 (605)
Q Consensus 465 ~~ 466 (605)
.+
T Consensus 456 ~~ 457 (469)
T PRK07487 456 RG 457 (469)
T ss_pred hh
Confidence 54
No 8
>PRK07056 amidase; Provisional
Probab=100.00 E-value=3.4e-87 Score=708.76 Aligned_cols=413 Identities=28% Similarity=0.359 Sum_probs=339.9
Q ss_pred hhHHHHHHHHHhhcCcccCCCC-cCceeeecccCCCCCCC-------CCCCCCCCCCceEEEeeccCCCCcccCCCchhh
Q 007401 27 GFVVLAETLRRRRNPKLNGRVD-FGAFLERFELIPFPQPP-------PPAARQPLAGLKFAIKDVFDVKGYVTGFGSPDW 98 (605)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~-~~a~~~~~~~~a~~~a~-------~~~~~gpL~Gvp~~vKD~~~~~G~~tt~Gs~~~ 98 (605)
+.+|++|+++.+++||++.|+. +|||++...++++++|+ .+...||||||||+|||+|+++|++||+||+.+
T Consensus 18 g~~s~~ev~~~~l~ri~~~~~~~lna~~~~~~~~al~~A~~~d~~~~~g~~~gpL~GvPi~vKD~~~v~G~~tt~Gs~~~ 97 (454)
T PRK07056 18 GRTTSRALVEAALARIADPAGEGARVFTHVDADAARAAADAADALRAAGAAPSPLAGIPVSVKDLFDVAGQVTRAGSRVL 97 (454)
T ss_pred CCCCHHHHHHHHHHHHHhhCCCCccEEEEeCHHHHHHHHHHHHHHHhCCCCCCCcCCCeEEEEeeeccCCCccCCCChhh
Confidence 4499999999999999999975 99999998777666553 355679999999999999999999999999998
Q ss_pred hhcCCCC-CCChHHHHHHHhCCCeEeeecccccccccCCCCCCCCCCCCCCC----CCCCCCCCCchHHHHHHHhcCCce
Q 007401 99 KRDHHEA-ERTAVVVTLLLKNGATCIGKTVLDEFAFGITGENKHYGTPVNPQ----MPSHIPGGSSSGSAVAVAAQLVDF 173 (605)
Q Consensus 99 ~~~~~~~-~~da~~V~rL~~aGai~~GKt~~~e~~~~~~~~n~~~G~~~NP~----~~~~~~GGSSgGsaaaVAag~~~~ 173 (605)
.+ .++ .+||++|+|||+||||++||||||||+++.+|+|++||+|+||| |++|+|||||||||||||+|++|+
T Consensus 98 ~~--~~~~~~dA~vV~rLr~aGAii~GKTn~~E~~~~~~~~n~~~G~t~NP~~~~~~~~~~~GGSSgGsAaaVAag~~~~ 175 (454)
T PRK07056 98 AD--APPAAADAPAVARLRRAGAVLIGRTNMTEFAFSGLGLNPHYGTPRNPWRRDVGDGRIPGGSSSGAAVSVADGMAAA 175 (454)
T ss_pred cc--CCCCCCCHHHHHHHHHCCCEEEEeccchhHhhCCCCCCCCCCCCCCCCCCCCCCCcCCCCcchHHHHHHHcCCCce
Confidence 75 455 68999999999999999999999999999999999999999999 899999999999999999999999
Q ss_pred eeccCCCCccchhhhhcccccccCCCCCccCCCCccCCCCCccccccccCHHHHHHHHHHHccCCCCCc----ccCceee
Q 007401 174 ALGTDTIGCVRVPASFCGILGYRPSHGTVSMIGVLPNSQSLDTVGLLARNASILHRVGHVLLQLNAVEP----RRARRLI 249 (605)
Q Consensus 174 a~GtD~gGSiR~PAa~~Gv~GlkPt~G~v~~~G~~p~~~~~d~~G~~ar~~~d~~~v~~~~~~~~~~~~----~~~~~l~ 249 (605)
++|||||||||+||+||||||||||+||||+.|++|+++++|++|||+|+++|++.+++++.+.++.++ .++.++.
T Consensus 176 alGtDtgGSIRiPAa~cGv~GlKPT~G~vs~~G~~~~~~~~d~~Gp~arsv~D~a~~~~vl~g~d~~d~~~~~~~~lrig 255 (454)
T PRK07056 176 ALGTDTGGSIRIPAALCGLTGFKPTARRVPLQGAVPLSTTLDSIGPLARSVACCALVDAVLAGEEPVVPAARPLEGLRLA 255 (454)
T ss_pred EEeeCCCCccccchHhhCceeeccCCCccCCCCcccCccccCcccCccCCHHHHHHHHHHhcCCCCCCcccccccCcEEE
Confidence 999999999999999999999999999999999999999999999999999999999999987654332 1234566
Q ss_pred eccchhhhcCCchhhHHHHHHHHHHHHhCCCCCccccccccc-cccCcchhhhhhcCCCCCCchhHHHHHHHHHHHhhhh
Q 007401 250 FADDIFQLSKVPKLKTIHVISKAIESLSGYQNPEHMNVGQYI-ASNVPSLKGLRAQSTSPENGTATLKALSSVMLSLQRY 328 (605)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~a~~~l~g~~~~~~~~l~~~v-~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 328 (605)
+..+.+ ....++++.+.++++++.|+..+. .| +...|.+..... +. ....+...
T Consensus 256 ~~~~~~--~~~~~~~v~~~~~~a~~~L~~~G~--------~v~~~~~~~~~~~~~--------------~~-~~~~~~~~ 310 (454)
T PRK07056 256 VPTTVV--LDGLDATVAAAFERALKRLSAAGA--------IIEEIAFPELAELAE--------------IN-AKGGFSAA 310 (454)
T ss_pred Ecchhh--ccCCCHHHHHHHHHHHHHHHHCCC--------EEEEecCcchHHHHH--------------HH-HhhhHHHH
Confidence 655432 122467899999999998864332 11 122233221110 00 00112223
Q ss_pred hhHhhHHHHHHhcCCCCChhHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEeCCCCCCccCCcccccch
Q 007401 329 EFKTIYEEWVKSAKPRLGYNVFERVLEAINTTQDNIKILYKVRNEMRAALQRLLKDDKILVIPTVSDPPLKLNTKKTYSA 408 (605)
Q Consensus 329 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~a~~~r~~~~~~~~~~~~~~Dvll~Pt~~~~ap~~~~~~~~~~ 408 (605)
|....+..+.......+++.++.++..+..++..+|.++++.|..+++.+.++|+++|+||+||+|.+||++++......
T Consensus 311 e~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~r~~~~~~~~~~~~~~D~ll~Pt~~~~a~~~~~~~~~~~ 390 (454)
T PRK07056 311 ESYAWHRPLLARHRDQYDPRVAARILRGEPMSAADYIDLLAARAAWIARAAARLARFDALVMPTVPIVPPRIADLEADDA 390 (454)
T ss_pred HHHHHHHHHHhhhhhhCCHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHccCCEEEECCCCCCCCCcccccccch
Confidence 34444555665566678999999999998899999999999999999999999999999999999999999875321111
Q ss_pred hhhh---chhhhcccccccCCceeeeecccCCCCCceeEEeeccCCchhHHhHHHHHHhHH
Q 007401 409 EFHD---RTLVLSSIGSMSGCCQVAIPIGKYNEHPISISFITYHGGDKFLLDTVLDLYDSL 466 (605)
Q Consensus 409 ~~~~---~~~~~t~~~nl~G~PaisvP~G~~~glp~g~~~~~~~~~d~~ll~~a~~l~~~~ 466 (605)
.+.. .++.||.+||++|+|++|||+|..+|+|+|+|+++++++|..+++++..+++.+
T Consensus 391 ~~~~~~~~~~~~t~~~nl~g~PaisvP~g~~~glPvGlqivg~~~~D~~lL~~a~~le~~l 451 (454)
T PRK07056 391 AFFRTNALLLRNPSLINFLDGCALSLPCHAPGEAPVGLMLAGAPGRDDRLLAIALAVEAVL 451 (454)
T ss_pred hhHHHHHHHhhcCccchhcCCCEEEEeCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHh
Confidence 2211 233479999999999999999988999999999999999999999999998755
No 9
>PRK05962 amidase; Validated
Probab=100.00 E-value=2e-86 Score=696.87 Aligned_cols=406 Identities=24% Similarity=0.350 Sum_probs=330.9
Q ss_pred HHhhcCcccCCCCcCceeeecccCCCCCCC-------CCCCCCCCCCceEEEeeccCCCCcccCCCchhhhhcCCCC-CC
Q 007401 36 RRRRNPKLNGRVDFGAFLERFELIPFPQPP-------PPAARQPLAGLKFAIKDVFDVKGYVTGFGSPDWKRDHHEA-ER 107 (605)
Q Consensus 36 ~~~~~~~~~~~~~~~a~~~~~~~~a~~~a~-------~~~~~gpL~Gvp~~vKD~~~~~G~~tt~Gs~~~~~~~~~~-~~ 107 (605)
+.+++||++.|+.+|||++.++++++++|+ .+...||||||||+|||||+|+|++||+||+.+.+ .++ .+
T Consensus 2 ~~~l~ri~~~~~~lna~~~~~~~~al~~A~~~d~~~~~g~~~gpL~GvPi~vKD~~~v~G~~tt~Gs~~~~~--~~~~~~ 79 (424)
T PRK05962 2 EATLARLAARAGEEHVFSKLYAERARAEADAADARRRAGRSLGPLDGRIVSIKDLFDVAGEPTLAGSVIRRD--APPAGA 79 (424)
T ss_pred HHHHHHHHhhCCcccEEEEECHHHHHHHHHHHHHHHHcCCCCCCCCCCEEEEEeeeecCCcccCCCChhhhc--CCCCcC
Confidence 568899999999999999998877666553 34567999999999999999999999999999875 455 68
Q ss_pred ChHHHHHHHhCCCeEeeecccccccccCCCCCCCCCCCCCCCCCCCCCCCCchHHHHHHHhcCCceeeccCCCCccchhh
Q 007401 108 TAVVVTLLLKNGATCIGKTVLDEFAFGITGENKHYGTPVNPQMPSHIPGGSSSGSAVAVAAQLVDFALGTDTIGCVRVPA 187 (605)
Q Consensus 108 da~~V~rL~~aGai~~GKt~~~e~~~~~~~~n~~~G~~~NP~~~~~~~GGSSgGsaaaVAag~~~~a~GtD~gGSiR~PA 187 (605)
||++|+||++||||++||||||||+++.+|+|++||+|+||||++|+|||||||||||||+|++|+++|||||||||+||
T Consensus 80 dA~vV~rL~~aGAiilGKTn~~E~~~~~~~~n~~~G~t~NP~~~~~~~GGSSgGsAaaVAaG~~~~alGtDtgGSiRiPA 159 (424)
T PRK05962 80 DALIVQRLRNAGAVIIGKTHMTEFAFTPVGLNPHYGEPGNAIDPARIPGGSSSGAAVSVAEGTSEIAIGSDTGGSVRIPA 159 (424)
T ss_pred ChHHHHHHHHCCCEEEEecCchHHhcCCCCCCCCCCCCCCCCCCCCCCCcCcHHHHHHHHcCCCceEEeeCCCCcchhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcccccccCCCCCccCCCCccCCCCCccccccccCHHHHHHHHHHHccCCCCC----cccCceeeeccchhhhcCCchh
Q 007401 188 SFCGILGYRPSHGTVSMIGVLPNSQSLDTVGLLARNASILHRVGHVLLQLNAVE----PRRARRLIFADDIFQLSKVPKL 263 (605)
Q Consensus 188 a~~Gv~GlkPt~G~v~~~G~~p~~~~~d~~G~~ar~~~d~~~v~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~~~~ 263 (605)
+||||||||||+||||+.|++|+++++|++|||+||++|++.+++++.+.+..+ ...+.++.+..+.+ ....++
T Consensus 160 a~cGv~GlKPT~G~v~~~G~~~~~~s~d~~Gp~arsv~D~~~~~~vl~g~~~~~~~~~~~~~lrig~~~~~~--~~~~~~ 237 (424)
T PRK05962 160 ALNGLVGFKPTARRIPLEGAFPLSPSLDSIGPLARTVADCAAADAVMAGEKPIPLEVLPVAGLRIGLPKGYL--LADMEP 237 (424)
T ss_pred HhhCceeeecCCCceeCCCcccCccccCccccccCCHHHHHHHHHHHcCCCCCcccccCcCCcEEEEEcccc--cccCCH
Confidence 999999999999999999999999999999999999999999999987654322 11234566554433 122467
Q ss_pred hHHHHHHHHHHHHhCCCCCcccccccccc-ccCcchhhhhhcCCCCCCchhHHHHHHHHHHHhhhhhhHhhHHHHHHhcC
Q 007401 264 KTIHVISKAIESLSGYQNPEHMNVGQYIA-SNVPSLKGLRAQSTSPENGTATLKALSSVMLSLQRYEFKTIYEEWVKSAK 342 (605)
Q Consensus 264 ~~~~~~~~a~~~l~g~~~~~~~~l~~~v~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~ 342 (605)
++.+.+.++++.|+..+. .|+ ...|.+.+. +.... ....+...+....+..+.+...
T Consensus 238 ~v~~a~~~a~~~L~~~G~--------~v~~~~~~~~~~~-------------~~~~~-~~~~~~~~e~~~~~~~~~~~~~ 295 (424)
T PRK05962 238 DVAAAFEASLAALEKAGA--------RIADLAIDDLIAR-------------LAEAT-RIGSIAGIEASHIHADWLADLD 295 (424)
T ss_pred HHHHHHHHHHHHHHHCCC--------EEEEeccchHHHH-------------HHHHH-HHhHHHHHHHHHHHHHHHhhch
Confidence 899999999998863322 221 122221100 00000 0011223344445555666666
Q ss_pred CCCChhHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEeCCCCCCccCCcccccchhh---hhchhhhcc
Q 007401 343 PRLGYNVFERVLEAINTTQDNIKILYKVRNEMRAALQRLLKDDKILVIPTVSDPPLKLNTKKTYSAEF---HDRTLVLSS 419 (605)
Q Consensus 343 ~~~~~~~~~~~~~~~~~s~~~~~~a~~~r~~~~~~~~~~~~~~Dvll~Pt~~~~ap~~~~~~~~~~~~---~~~~~~~t~ 419 (605)
..+++.++.++..+..++..+|.++++.|..+++.+.++|+++|+||+||+|.+||+++........+ ...++.||.
T Consensus 296 ~~~~~~~~~~~~~g~~~~~~~~~~a~~~r~~~~~~~~~~~~~~D~ll~Pt~~~~a~~~~~~~~~~~~~~~~~~~~~~~t~ 375 (424)
T PRK05962 296 ANVDIRVKRPLSRRIKVPLEAYHRLMRTRAALARAMDERLAGFDMFALPATPIVAPTIASVSEDEEEYDRVENLLLRNTQ 375 (424)
T ss_pred hhCCHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCCCCccccccchHHHHHHHHHHHhhCc
Confidence 77899999999999889999999999999999999999999999999999999999987532211111 122345899
Q ss_pred cccccCCceeeeecccCCCCCceeEEeeccCCchhHHhHHHHHHhHHHH
Q 007401 420 IGSMSGCCQVAIPIGKYNEHPISISFITYHGGDKFLLDTVLDLYDSLQE 468 (605)
Q Consensus 420 ~~nl~G~PaisvP~G~~~glp~g~~~~~~~~~d~~ll~~a~~l~~~~~e 468 (605)
++|++|+|++|||+|. +|+|+|+|+++++++|..+++++..+++.+.+
T Consensus 376 ~~n~~G~Pa~svP~g~-~glPvGlqlvg~~~~D~~lL~~a~~le~~l~~ 423 (424)
T PRK05962 376 VANQFDLCSITLPMPG-MALPAGLMLTARNGSDRRLLAAAASVEKLLEH 423 (424)
T ss_pred CccccCCCeEEEECCC-CCCCEEEEEECCCCCHHHHHHHHHHHHHHhcc
Confidence 9999999999999984 79999999999999999999999999886543
No 10
>PRK07486 amidase; Provisional
Probab=100.00 E-value=2.5e-86 Score=708.47 Aligned_cols=421 Identities=22% Similarity=0.259 Sum_probs=332.2
Q ss_pred HHHHHHhhhh-----HHHHHHHHHhhcCcccCCCCcCceeeecccC-CCCCCC-------CCCCCCCCCCceEEEeeccC
Q 007401 19 VVIGVSVVGF-----VVLAETLRRRRNPKLNGRVDFGAFLERFELI-PFPQPP-------PPAARQPLAGLKFAIKDVFD 85 (605)
Q Consensus 19 ~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~-a~~~a~-------~~~~~gpL~Gvp~~vKD~~~ 85 (605)
..++.+|+.. +|++|+++.+++||.+.|+.+|||++...++ ++++|+ .+...||||||||+|||+|+
T Consensus 11 ~~~~~~l~~~~~~g~~t~~ev~~~~l~ri~~~~~~~na~~~~~~~~~al~~A~~~d~~~~~g~~~gpL~GvPi~vKD~~~ 90 (484)
T PRK07486 11 RLSAHALSRAIRRRQVSCVEVMRAYLAHIERVNPAVNAIVALRDRDALLAEAAEKDAALARGEYRGWLHGMPQAPKDLAP 90 (484)
T ss_pred hCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCCceEEEeCccHHHHHHHHHHHHHHhcCCCCCCcCCCeEEEecccc
Confidence 3366666644 8999999999999999999999999986533 334332 34567999999999999999
Q ss_pred CCCcccCCCchhhhhcCCCCCCChHHHHHHHhCCCeEeeecccccccccCCCCCCCCCCCCCCCCCCCCCCCCchHHHHH
Q 007401 86 VKGYVTGFGSPDWKRDHHEAERTAVVVTLLLKNGATCIGKTVLDEFAFGITGENKHYGTPVNPQMPSHIPGGSSSGSAVA 165 (605)
Q Consensus 86 ~~G~~tt~Gs~~~~~~~~~~~~da~~V~rL~~aGai~~GKt~~~e~~~~~~~~n~~~G~~~NP~~~~~~~GGSSgGsaaa 165 (605)
|+|++||+||+.+.+ .++.+||++|+||++|||||+||||||||+++.+|+|++||+|+||||++|+|||||||||||
T Consensus 91 v~G~~tt~Gs~~~~~--~~~~~dA~vV~rLr~AGaii~GKTn~~Efa~~~~~~n~~~G~t~NP~~~~~~pGGSSgGsAaa 168 (484)
T PRK07486 91 TKGIRTTLGSPIFAD--QVPQEDAIVVERMRAAGAIFIGKTNTPEFGLGSHTYNPVYGATRNPYDPSRSAGGSSGGAAAA 168 (484)
T ss_pred cCCcCcccccHhhCC--CCCCCcHHHHHHHHHCCCeeEEecCchHHhcCCCCCCCCCCCCCCCCCCCCCCCcCcHHHHHH
Confidence 999999999999875 678899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCceeeccCCCCccchhhhhcccccccCCCCCccCCCCc-cCCCCCccccccccCHHHHHHHHHHHccCCCCCc--
Q 007401 166 VAAQLVDFALGTDTIGCVRVPASFCGILGYRPSHGTVSMIGVL-PNSQSLDTVGLLARNASILHRVGHVLLQLNAVEP-- 242 (605)
Q Consensus 166 VAag~~~~a~GtD~gGSiR~PAa~~Gv~GlkPt~G~v~~~G~~-p~~~~~d~~G~~ar~~~d~~~v~~~~~~~~~~~~-- 242 (605)
||+|++++|||||||||||+|||||||||||||+||||+.|.+ ++++++|++|||+||++|++.+++++.+.+..++
T Consensus 169 VAaG~~~~aiGtDtgGSIRiPAa~cGvvGlKPT~G~vs~~g~~~~~~~s~d~~Gp~arsv~D~a~~~~~l~g~d~~d~~~ 248 (484)
T PRK07486 169 LALRMLPVADGSDMMGSLRNPAAFNNVYGFRPSQGRVPHGPGGDVFVQQLGTEGPMGRTVEDVALLLAVQAGYDPRDPLS 248 (484)
T ss_pred HHcCCCceEeecCCCCCeecchhhhCceeecCCCCcccCCCCcccccccccccCCeeCCHHHHHHHHHHHhCCCCCCCcc
Confidence 9999999999999999999999999999999999999998755 6889999999999999999999999886532211
Q ss_pred ---------------ccCceeeeccchhhhcCCchhhHHHHHHHHHHHHhCCCCCccccccccccccCcchhhhhhcCCC
Q 007401 243 ---------------RRARRLIFADDIFQLSKVPKLKTIHVISKAIESLSGYQNPEHMNVGQYIASNVPSLKGLRAQSTS 307 (605)
Q Consensus 243 ---------------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~~l~g~~~~~~~~l~~~v~~~~p~~~~~~~~~~~ 307 (605)
..+.++.+..+.+. ....++++.++++++++.|+..+ +.|++..+.+..
T Consensus 249 ~~~~~~~~~~~~~~~~~~lrigv~~~~~~-~~~~~~~v~~a~~~a~~~L~~~G--------~~v~~~~~~~~~------- 312 (484)
T PRK07486 249 LAEDPARFAQPLEADLRGKRIAWLGDWGG-YLPMEAGVLELCEAALATLRELG--------CDVEAALPAFPP------- 312 (484)
T ss_pred ccCCCcchhhHhccCCCCCEEEEeCcccC-CCCCCHHHHHHHHHHHHHHHHCC--------CEEEEeCCCcch-------
Confidence 12235555443321 11246788999999999986333 222222122110
Q ss_pred CCCchhHHHHHHHHHHHhhhhhhHhhHHHHHH--hcCCCCChhHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHhCCC
Q 007401 308 PENGTATLKALSSVMLSLQRYEFKTIYEEWVK--SAKPRLGYNVFERVLEAINTTQDNIKILYKVRNEMRAALQRLLKDD 385 (605)
Q Consensus 308 ~~~~~~~~~~~~~~~~~l~~~e~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~s~~~~~~a~~~r~~~~~~~~~~~~~~ 385 (605)
....+.+..+...+.......... .....+++.++.+++.+..++..+|.++++.|..+++.+.++|+++
T Consensus 313 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~r~~~~~~~~~~~~~~ 384 (484)
T PRK07486 313 --------ERLWRAWLTLRHFLVGGSLLALYRDPARRALLKPEAIWEIEGGLALTAAQVYEASVIRSAWYQALLRLFERY 384 (484)
T ss_pred --------HHHHHHHHHHHHHHHHHhHHHHhccccchhhcCHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 000011111111111111112221 1235678999999988888999999999999999999999999999
Q ss_pred cEEEEeCCCCCCccCCccc-----ccchhhhhchhhhcccccccCCceeeeecccC-CCCCceeEEeeccCCchhHHhHH
Q 007401 386 KILVIPTVSDPPLKLNTKK-----TYSAEFHDRTLVLSSIGSMSGCCQVAIPIGKY-NEHPISISFITYHGGDKFLLDTV 459 (605)
Q Consensus 386 Dvll~Pt~~~~ap~~~~~~-----~~~~~~~~~~~~~t~~~nl~G~PaisvP~G~~-~glp~g~~~~~~~~~d~~ll~~a 459 (605)
|+||+||+|.+||+++... .........++.+|.++|++|+|++|||+|.. +|+|+|+|+++++++|..+++++
T Consensus 385 D~ll~Pt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~Nl~G~PaisvP~g~~~~glPvGlQlvg~~~~D~~lL~~a 464 (484)
T PRK07486 385 DFLALPTAQVFPFDAEWRWPRAIAGRAMDTYHRWMEVVVPATLAGLPAISVPVGFNAAGLPMGMQIIGPPRADLAVLQLA 464 (484)
T ss_pred CEEEcCCCCCCCCccccccccccccchhhhhhhhhcccccccccCCCeEEEECCcCCCCCceEEEEECCCCCHHHHHHHH
Confidence 9999999999998876421 00111112334578899999999999999987 89999999999999999999999
Q ss_pred HHHHhH
Q 007401 460 LDLYDS 465 (605)
Q Consensus 460 ~~l~~~ 465 (605)
..+++.
T Consensus 465 ~~le~~ 470 (484)
T PRK07486 465 HAYEQA 470 (484)
T ss_pred HHHHhc
Confidence 998774
No 11
>PRK07042 amidase; Provisional
Probab=100.00 E-value=3.2e-86 Score=704.00 Aligned_cols=414 Identities=18% Similarity=0.158 Sum_probs=331.4
Q ss_pred HHHHhh-----hhHHHHHHHHHhhcCcccCCCCcCceeeecccCCCCCCC-------CCCCCCCCCCceEEEeeccCCCC
Q 007401 21 IGVSVV-----GFVVLAETLRRRRNPKLNGRVDFGAFLERFELIPFPQPP-------PPAARQPLAGLKFAIKDVFDVKG 88 (605)
Q Consensus 21 ~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~a~~~a~-------~~~~~gpL~Gvp~~vKD~~~~~G 88 (605)
++.+|+ +.+|++|+++.+++||++.|+.+|||++...++++++|+ .+..+||||||||+|||+|+|+|
T Consensus 8 ~~~~l~~~~~~g~~s~~el~~~~l~ri~~~~~~lna~~~~~~d~al~~A~~~d~~~~~g~~~gpL~GvPi~vKD~~~v~G 87 (464)
T PRK07042 8 SAVELLAGYRARSLSPVEVTEAVLAHIARWEPHLNALYAFDPEAARAAARASTARWAKGEPLGPLDGVPVTIKENIATRG 87 (464)
T ss_pred CHHHHHHHHHcCCCCHHHHHHHHHHHHHHHCCCccEEEEcCHHHHHHHHHHHHHHHHcCCCCCCcCCCEEEEEcccccCC
Confidence 455555 348999999999999999999999999998887766554 35567999999999999999999
Q ss_pred cccCCCchhhhhcCCCCCCChHHHHHHHhCCCeEeeecccccccccCCCCCCCCCCCCCCCCCCCCCCCCchHHHHHHHh
Q 007401 89 YVTGFGSPDWKRDHHEAERTAVVVTLLLKNGATCIGKTVLDEFAFGITGENKHYGTPVNPQMPSHIPGGSSSGSAVAVAA 168 (605)
Q Consensus 89 ~~tt~Gs~~~~~~~~~~~~da~~V~rL~~aGai~~GKt~~~e~~~~~~~~n~~~G~~~NP~~~~~~~GGSSgGsaaaVAa 168 (605)
++||+||..+.+ .++.+||++|+||++|||||+||||||||+++.+|+|++||+|+||||++|+|||||||||||||+
T Consensus 88 ~~tt~Gs~~~~~--~~~~~dA~vV~~Lr~aGAiilGKTn~~Efa~~~~~~n~~~G~t~NP~~~~~~~GGSSgGsAaaVAa 165 (464)
T PRK07042 88 VPVPLGTAATDL--PPAAADAPPAARLREAGAVILAKTTMPDYGMLSSGLSSFHGLTRNPWDLDQNPGGSSAGAGAAAAA 165 (464)
T ss_pred cccCCCChhhcC--CCCCcchHHHHHHHHCCCEEEEecCchHhhcCCCCCCCCCCCcCCCCCCCCCCCCChHHHHHHHHc
Confidence 999999999864 677899999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCceeeccCCCCccchhhhhcccccccCCCCCccCCCCccCCCCCccccccccCHHHHHHHHHHHccCCCCCc------
Q 007401 169 QLVDFALGTDTIGCVRVPASFCGILGYRPSHGTVSMIGVLPNSQSLDTVGLLARNASILHRVGHVLLQLNAVEP------ 242 (605)
Q Consensus 169 g~~~~a~GtD~gGSiR~PAa~~Gv~GlkPt~G~v~~~G~~p~~~~~d~~G~~ar~~~d~~~v~~~~~~~~~~~~------ 242 (605)
|++|+|||||||||||+|||||||||||||+||||+.|.. +.|++|||+|+++|++.+++++.+.+..+.
T Consensus 166 G~~~~alGtDtgGSIRiPAa~cGvvG~KPT~Grv~~~g~~----~~d~~Gp~arsv~D~a~~l~vl~g~d~~d~~~~~~~ 241 (464)
T PRK07042 166 GYGPLHLGTDIGGSVRLPAGWCGIVGLKPSLGRIPIDPPY----TGRCAGPMTRTVDDAALLMSVLSRPDARDGTSLPPQ 241 (464)
T ss_pred CCCceeeecCCCCccccchHhhCceeecCCCCccCCCCCc----cccccCCccCCHHHHHHHHHHhcCCCCCCccccCCC
Confidence 9999999999999999999999999999999999998843 358999999999999999999876432211
Q ss_pred ----------ccCceeeeccchhhhcCCchhhHHHHHHHHHHHHhCCCCCccccccccccccCcch-hhhhhcCCCCCCc
Q 007401 243 ----------RRARRLIFADDIFQLSKVPKLKTIHVISKAIESLSGYQNPEHMNVGQYIASNVPSL-KGLRAQSTSPENG 311 (605)
Q Consensus 243 ----------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~~l~g~~~~~~~~l~~~v~~~~p~~-~~~~~~~~~~~~~ 311 (605)
..+.++.+..+... ....++++.++++++++.|+..+ +.+++..|.+ ..+
T Consensus 242 ~~~~~~~~~~~~~lrigv~~~~~~-~~~~~~~v~~a~~~a~~~L~~~G--------~~v~~~~~~~~~~~---------- 302 (464)
T PRK07042 242 DIDWSDLDIDVRGLRIGLMLDAGC-GLAVDPEVRAAVEAAARRFEAAG--------AIVEPVPPFLTRAM---------- 302 (464)
T ss_pred CcChhhhccCcCCCEEEEECcccC-CCCCCHHHHHHHHHHHHHHHHCC--------CEEEEeCCchhHHH----------
Confidence 12235555443321 11246789999999999886333 2222111211 111
Q ss_pred hhHHHHHHHHHHHhhhhhhHhhHHHHHHhcCCCCChhHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEe
Q 007401 312 TATLKALSSVMLSLQRYEFKTIYEEWVKSAKPRLGYNVFERVLEAINTTQDNIKILYKVRNEMRAALQRLLKDDKILVIP 391 (605)
Q Consensus 312 ~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~a~~~r~~~~~~~~~~~~~~Dvll~P 391 (605)
.+.+..+...+....+..+.+.....+.+.++.+++.+..++..+|.+++..|..+++.+.++|+++|+||+|
T Consensus 303 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~~~~~~~~~~~~~~~~D~ll~P 375 (464)
T PRK07042 303 -------LDGLDRFWRARLWSDLAALPPERRAKVLPYIRRWAEGGADLSGVEAVRGFNQTFAMRAAAARLFAEFDYVLSP 375 (464)
T ss_pred -------HHHHHHHHHHHHHHHHHHHhhhhhhhcCHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhcCCEEEcC
Confidence 0001111111222333344444556788999999998889999999999999999999999999999999999
Q ss_pred CCCCCCccCCccccc-chhhhhchhhhcccccccCCceeeeecccC-CCCCceeEEeeccCCchhHHhHHHHHHhHH
Q 007401 392 TVSDPPLKLNTKKTY-SAEFHDRTLVLSSIGSMSGCCQVAIPIGKY-NEHPISISFITYHGGDKFLLDTVLDLYDSL 466 (605)
Q Consensus 392 t~~~~ap~~~~~~~~-~~~~~~~~~~~t~~~nl~G~PaisvP~G~~-~glp~g~~~~~~~~~d~~ll~~a~~l~~~~ 466 (605)
|+|.+||+++..... ........+.||.+||++|+|++|||+|.. +|+|+|+|+++++++|..+|+++..+++..
T Consensus 376 t~~~~a~~~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~~~~GlPvGlQlvg~~~~D~~lL~~a~~le~~~ 452 (464)
T PRK07042 376 VAPVPAFPAEWASPTNDPARPFEHIAFTVPWNMSEQPAASINCGFTRDGLPIGLQIVGPRFDDLGVLRLAKAFEGWR 452 (464)
T ss_pred CCCCCCCCcccccccccchhhhcccccccceeccCCCeEEeecCcCCCCCCeEEEEecCCCcHHHHHHHHHHHHHhc
Confidence 999999988642211 111111223589999999999999999987 899999999999999999999999988753
No 12
>PRK06170 amidase; Provisional
Probab=100.00 E-value=4.4e-86 Score=708.47 Aligned_cols=421 Identities=22% Similarity=0.272 Sum_probs=332.7
Q ss_pred hhHHHHHHHhhhh-----HHHHHHHHHhhcCcccCCCCcCceeeecccCCCCCCCC------CCCCCCCCCceEEEeecc
Q 007401 16 KVWVVIGVSVVGF-----VVLAETLRRRRNPKLNGRVDFGAFLERFELIPFPQPPP------PAARQPLAGLKFAIKDVF 84 (605)
Q Consensus 16 ~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~a~~~a~~------~~~~gpL~Gvp~~vKD~~ 84 (605)
++...++.+|+++ +|++|+++.+++||++.|+.+|||++..+++++++|+. ....||||||||+|||+|
T Consensus 8 ~~~~~s~~~l~~~~~~g~~t~~ev~~~~l~ri~~~~~~lna~~~~~~e~al~~A~~~d~~~~~g~~gpL~GvPv~VKD~~ 87 (490)
T PRK06170 8 EWSFLPATELAAALAAGEVSSVELTDLAIARIERHDGKINAIVVRDFDRARAAARAADAARARGERGPLLGIPVTVKESF 87 (490)
T ss_pred hhhhcCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCcCEEEECCHHHHHHHHHHHHHHHhcCCCCCcCCceEEEeccc
Confidence 3444577777755 89999999999999999999999999988877666531 124699999999999999
Q ss_pred CCCCcccCCCchhhhhcCCCCCCChHHHHHHHhCCCeEeeecccccccccCCCCCCCCCCCCCCCCCCCCCCCCchHHHH
Q 007401 85 DVKGYVTGFGSPDWKRDHHEAERTAVVVTLLLKNGATCIGKTVLDEFAFGITGENKHYGTPVNPQMPSHIPGGSSSGSAV 164 (605)
Q Consensus 85 ~~~G~~tt~Gs~~~~~~~~~~~~da~~V~rL~~aGai~~GKt~~~e~~~~~~~~n~~~G~~~NP~~~~~~~GGSSgGsaa 164 (605)
+|+|++||+||+.|.+ .++.+||++|+|||+|||||+||||||||+++.+|+|++||+|+||||++|+||||||||||
T Consensus 88 ~v~G~~tt~Gs~~~~~--~~~~~da~vV~rLr~aGAii~GKTn~~E~~~~~~~~n~~~G~t~NP~~~~~~~GGSSgGsAa 165 (490)
T PRK06170 88 NVAGLPTTWGFPDLRD--YVPAEDAVAVARLKAAGAVILGKTNVPLGLQDWQSYNEIYGTTNNPWDLARTPGGSSGGSAA 165 (490)
T ss_pred ccCCcccCCCChhhcC--CCCCccHHHHHHHHHCCCEEEEecCChhhccCCCccCCCCCCCCCCCCCCCCCCCChHHHHH
Confidence 9999999999999975 67889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCceeeccCCCCccchhhhhcccccccCCCCCccCCCCcc-----C--CCCCccccccccCHHHHHHHHHHHccC
Q 007401 165 AVAAQLVDFALGTDTIGCVRVPASFCGILGYRPSHGTVSMIGVLP-----N--SQSLDTVGLLARNASILHRVGHVLLQL 237 (605)
Q Consensus 165 aVAag~~~~a~GtD~gGSiR~PAa~~Gv~GlkPt~G~v~~~G~~p-----~--~~~~d~~G~~ar~~~d~~~v~~~~~~~ 237 (605)
|||+|++|+|+|||||||||+|||||||||||||+||||+.|++| + +.++|++|||+||++|++.+++++.+.
T Consensus 166 AVAaG~~~~alGtDtgGSiRiPAa~cGvvG~KPT~Grv~~~G~~~~~~~~~~~~~~~d~~Gp~arsv~D~a~~l~~l~g~ 245 (490)
T PRK06170 166 ALAAGFGALSIGSDIGGSLRVPAHYCGVYAHKPTLGLVPLRGHIPPPAPALPGQADLAVAGPMARSARDLALLLDVMAGP 245 (490)
T ss_pred HHHcCCCceeeecCCCCccccChHHhCceeecCCCCcCcCCCcCCccccccccccccccccCccCCHHHHHHHHHHHhCC
Confidence 999999999999999999999999999999999999999999988 4 346899999999999999999999865
Q ss_pred CCCCc---------------ccCceeeeccchhhhcCCchhhHHHHHHHHHHHHhCCCCCcccccccccccc---Ccchh
Q 007401 238 NAVEP---------------RRARRLIFADDIFQLSKVPKLKTIHVISKAIESLSGYQNPEHMNVGQYIASN---VPSLK 299 (605)
Q Consensus 238 ~~~~~---------------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~~l~g~~~~~~~~l~~~v~~~---~p~~~ 299 (605)
+..+. .++.|+.+..+.+ ....++++.++++++++.|+..+ +.|++. .|.+.
T Consensus 246 d~~d~~~~~~~~~~~~~~~~~~~lrig~~~~~~--~~~~~~~v~~a~~~a~~~L~~~G--------~~v~~~~~~~~~~~ 315 (490)
T PRK06170 246 DPLDGGVAYRLALPPARHGRLKDFRVLVLDEHP--LLPTDAAVRAAIERLAAALADAG--------ARVVRHSPLLPDLA 315 (490)
T ss_pred CccccccccccCCCcccccccCCCEEEEECCcC--CCCCCHHHHHHHHHHHHHHHHCC--------CEEEEcCCCCCchH
Confidence 32210 0223555554432 12346789999999999886333 222111 22222
Q ss_pred hhhhcCCCCCCchhHHHHHHHHHHHhhhhhhHhhH-----HHHHHh--cCCCCChhHHHHHHHHhcCCHHHHHHHHHHHH
Q 007401 300 GLRAQSTSPENGTATLKALSSVMLSLQRYEFKTIY-----EEWVKS--AKPRLGYNVFERVLEAINTTQDNIKILYKVRN 372 (605)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~e~~~~~-----~~~~~~--~~~~~~~~~~~~~~~~~~~s~~~~~~a~~~r~ 372 (605)
+.. ..+..+...+....+ ...... ....+.+.++.++..+..++..+|.++++.|.
T Consensus 316 ~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~r~ 378 (490)
T PRK06170 316 ESA-----------------RLYMRLLFAASAARFPPDAYADAQARAAGLSADDRSLAAERLRGAVLSHRDWLFADAARE 378 (490)
T ss_pred HHH-----------------HHHHHHHHHHHhhccchhHHHHhhhccccccchhHHHHHHHhccccCCHHHHHHHHHHHH
Confidence 111 111111111111100 110000 12235566777777888889999999999999
Q ss_pred HHHHHHHHHhCCCcEEEEeCCCCCCccCCccccc------c----hhhhhchhhhcccccccCCceeeeecccC-CCCCc
Q 007401 373 EMRAALQRLLKDDKILVIPTVSDPPLKLNTKKTY------S----AEFHDRTLVLSSIGSMSGCCQVAIPIGKY-NEHPI 441 (605)
Q Consensus 373 ~~~~~~~~~~~~~Dvll~Pt~~~~ap~~~~~~~~------~----~~~~~~~~~~t~~~nl~G~PaisvP~G~~-~glp~ 441 (605)
.+++.+.++|+++|+||+||+|.+||+++..... . ..+. ..+.||.++|++|+|++|||+|+. +|+|+
T Consensus 379 ~~~~~~~~~~~~~D~ll~Pt~~~~a~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~t~~~Nl~G~PaisvP~g~~~~GlPv 457 (490)
T PRK06170 379 ELRAAWRRFFAEFDVVLCPVTPTPAFPHDHAPDPLERRIDIDGVSYPYW-DQLVWAGLATLPGLPATAIPIGLSATGLPV 457 (490)
T ss_pred HHHHHHHHHHhcCCEEEeCCCCCCCCCCCccccccccccccCCcccchh-hhhhhcceecccCCCeEEEECCcCCCCCce
Confidence 9999999999999999999999999998753110 0 0111 223589999999999999999987 89999
Q ss_pred eeEEeeccCCchhHHhHHHHHHhHH
Q 007401 442 SISFITYHGGDKFLLDTVLDLYDSL 466 (605)
Q Consensus 442 g~~~~~~~~~d~~ll~~a~~l~~~~ 466 (605)
|+|+++++++|..||+++..+++.+
T Consensus 458 GlQlig~~~~D~~LL~~a~~lE~~~ 482 (490)
T PRK06170 458 GVQIVGPALEDRTPLRLAELLEEEF 482 (490)
T ss_pred eEEEecCCCCHHHHHHHHHHHHHhc
Confidence 9999999999999999999998743
No 13
>PRK12470 amidase; Provisional
Probab=100.00 E-value=3.9e-86 Score=701.33 Aligned_cols=419 Identities=20% Similarity=0.217 Sum_probs=330.2
Q ss_pred hHHHHHHHhhhh-----HHHHHHHHHhhcCcccCCCCcCceeeecccCCCCCCC-------CCCCCCCCCCceEEEeecc
Q 007401 17 VWVVIGVSVVGF-----VVLAETLRRRRNPKLNGRVDFGAFLERFELIPFPQPP-------PPAARQPLAGLKFAIKDVF 84 (605)
Q Consensus 17 ~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~a~~~a~-------~~~~~gpL~Gvp~~vKD~~ 84 (605)
++..++.+|+.+ +|++|+++.+++||++.|+.+|||+...+++++++|+ .+... |||||||+|||+|
T Consensus 6 ~~~~s~~~l~~~~~~g~~s~~e~~~~~l~ri~~~~~~lna~~~~~~~~a~~~A~~~d~~~~~g~~~-pL~GvPi~vKD~~ 84 (462)
T PRK12470 6 LAFAGAAAQARMLADGELTAPMLLEVYLQRIERLDSHLRAYRVVLFDRARAEAEAAQQRLDAGERL-PLLGVPIAIKDDV 84 (462)
T ss_pred hhhCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHHCCCcCEEEEeCHHHHHHHHHHhHHHHhcCCCC-CcCCCeEEEecCc
Confidence 344467777755 8999999999999999999999999998887766553 23344 9999999999999
Q ss_pred CCCCcccCCCchhhhhcCCCCCCChHHHHHHHhCCCeEeeecccccccccCCCCCCCCCCCCCCCCCCCCCCCCchHHHH
Q 007401 85 DVKGYVTGFGSPDWKRDHHEAERTAVVVTLLLKNGATCIGKTVLDEFAFGITGENKHYGTPVNPQMPSHIPGGSSSGSAV 164 (605)
Q Consensus 85 ~~~G~~tt~Gs~~~~~~~~~~~~da~~V~rL~~aGai~~GKt~~~e~~~~~~~~n~~~G~~~NP~~~~~~~GGSSgGsaa 164 (605)
+++|++||+||+.+ . .++.+||++|+||++||||++||||||||+++.+|+|++||+|+||||++|+||||||||||
T Consensus 85 ~v~G~~tt~Gs~~~-~--~~~~~dA~vV~rLr~aGaii~GKTn~~Efa~~~~~~n~~~G~t~NP~~~~~~~GGSSgGsAa 161 (462)
T PRK12470 85 DVAGEVTTYGSAGH-G--PAATSDAEVVRRLRAAGAVIIGKTNVPELMIMPFTESLAFGATRNPWDPNRTPGGSSGGSAA 161 (462)
T ss_pred ccCCceeCCCCccc-C--CCCCccHHHHHHHHHCCCeEEEEeChHhHhcCCCCCCCCCCCCCCCCCCCCCCCcchhHHHH
Confidence 99999999999975 2 57889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCceeeccCCCCccchhhhhcccccccCCCCCccCCCCccCCCCCccccccccCHHHHHHHHHHHccCCCCC---
Q 007401 165 AVAAQLVDFALGTDTIGCVRVPASFCGILGYRPSHGTVSMIGVLPNSQSLDTVGLLARNASILHRVGHVLLQLNAVE--- 241 (605)
Q Consensus 165 aVAag~~~~a~GtD~gGSiR~PAa~~Gv~GlkPt~G~v~~~G~~p~~~~~d~~G~~ar~~~d~~~v~~~~~~~~~~~--- 241 (605)
|||+|++|+|||||||||||||||||||||||||+||||+.|++|+++++|++|||+|+|+|++.+++++.+.+..+
T Consensus 162 AVAaG~~~~alGtDtgGSiRiPAa~cGvvG~KPT~G~vs~~g~~~~~~~ld~~Gp~ar~v~D~a~~~~vl~~~~~~~~~~ 241 (462)
T PRK12470 162 AVAAGLAPVALGSDGGGSIRIPSTWCGLFGLKPQRDRISLEPHDGAWQGLSVNGPIARSVMDAALLLDATTTVPGPEGEF 241 (462)
T ss_pred HHHcCCCceEEecCCCCchhhchhhhCceeecCCCCCcCCCCCCCcccCccccCCeeCCHHHHHHHHHHhcCCCCCCcch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999987543211
Q ss_pred ------cccCceeeeccchhh-hcCCchhhHHHHHHHHHHHHhCCCCCccccccccccccCcchhhhhhcCCCCCCchhH
Q 007401 242 ------PRRARRLIFADDIFQ-LSKVPKLKTIHVISKAIESLSGYQNPEHMNVGQYIASNVPSLKGLRAQSTSPENGTAT 314 (605)
Q Consensus 242 ------~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~a~~~l~g~~~~~~~~l~~~v~~~~p~~~~~~~~~~~~~~~~~~ 314 (605)
...+.++.+..+.+. .....++++.+.++++++.|+..+ +.+++..|.+....
T Consensus 242 ~~~~~~~~~~lrig~~~~~~~~~~~~~~~~v~~a~~~a~~~L~~~G--------~~v~~~~~~~~~~~------------ 301 (462)
T PRK12470 242 VAAAAREPGRLRIALSTRVPTPLPVRCGKQELAAVHQAGALLRDLG--------HDVVVRDPDYPAAT------------ 301 (462)
T ss_pred hhhhccCCCCCEEEEECCccccCCCCCCHHHHHHHHHHHHHHHhCC--------CEEEEeCCCchhHH------------
Confidence 112345555544321 112246789999999999986333 22221112211000
Q ss_pred HHHHHHHHHHhhhhhhHhhHHHHHHhcCCCCChhHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEeCCC
Q 007401 315 LKALSSVMLSLQRYEFKTIYEEWVKSAKPRLGYNVFERVLEAINTTQDNIKILYKVRNEMRAALQRLLKDDKILVIPTVS 394 (605)
Q Consensus 315 ~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~a~~~r~~~~~~~~~~~~~~Dvll~Pt~~ 394 (605)
...+...+ ....... .........+++.++.++..+..++..+|.....++..+++.+.++|+++|+||+||+|
T Consensus 302 ~~~~~~~~-----~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~ll~Pt~p 375 (462)
T PRK12470 302 YANYLPRF-----FRGISDD-ADAQAHPDRLEARTRAIARLGSFFSDRRMAALRAAEVVLSARIQSIFDDVDVVVTPGTA 375 (462)
T ss_pred HHHHHHHH-----HHHHHHh-hccccChhhcCHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHhCCCEEeCCCCC
Confidence 00000000 0000000 01112345678999999999998898888755555558999999999999999999999
Q ss_pred CCCccCCccccc--chh--hhhchhhhcccccccCCceeeeecccC-CCCCceeEEeeccCCchhHHhHHHHHHhH
Q 007401 395 DPPLKLNTKKTY--SAE--FHDRTLVLSSIGSMSGCCQVAIPIGKY-NEHPISISFITYHGGDKFLLDTVLDLYDS 465 (605)
Q Consensus 395 ~~ap~~~~~~~~--~~~--~~~~~~~~t~~~nl~G~PaisvP~G~~-~glp~g~~~~~~~~~d~~ll~~a~~l~~~ 465 (605)
.+||+++..... ... ....+..||.++|++|+|++|||+|.+ +|||+|+|+++++++|..||+++..+++.
T Consensus 376 ~~ap~~~~~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~~~~GlPvGlqlvg~~~~D~~LL~~A~~le~~ 451 (462)
T PRK12470 376 TGPSRIGAYQRRGAVSTLLLVVQRVPYFQVWNLTGQPAAVVPWDFDGDGLPMSVQLVGRPYDEATLLALAAQIESA 451 (462)
T ss_pred CCCCCCCccCCCcchhhhhhhhhccCcCccchhcCCCeEEEecCcCCCCCceEEEEECCCCcHHHHHHHHHHHHcc
Confidence 999998743211 111 112334589999999999999999987 89999999999999999999999998764
No 14
>TIGR00132 gatA glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase, A subunit. This orthology group is more narrowly defined here than in Proc Natl Acad Aci USA 94, 11819-11826 (1997). In particular, a Rhodococcus homolog found in association with nitrile hydratase genes and described as an enantiomer-selective amidase active on several 2-aryl propionamides, is excluded here. It is likely, however, that the amidase subunit GatA is not exclusively a part of the Glu-tRNA(Gln) amidotransferase heterotrimer and restricted to that function in all species.
Probab=100.00 E-value=4.2e-86 Score=703.89 Aligned_cols=416 Identities=27% Similarity=0.359 Sum_probs=324.9
Q ss_pred hhHHHHHHHHHhhcCcccCCCCcCceeeecccCCCCCCCCCC--CCCCCCCceEEEeeccCCCCcccCCCchhhhhcCCC
Q 007401 27 GFVVLAETLRRRRNPKLNGRVDFGAFLERFELIPFPQPPPPA--ARQPLAGLKFAIKDVFDVKGYVTGFGSPDWKRDHHE 104 (605)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~a~~~a~~~~--~~gpL~Gvp~~vKD~~~~~G~~tt~Gs~~~~~~~~~ 104 (605)
+.+|++|+++.+++||++.|+.+|||++..+++++++|+... ..||||||||+|||+|+|+|++||+||+.|.+ .+
T Consensus 8 g~~s~~ev~~~~l~ri~~~~~~~na~~~~~~~~al~~A~~~d~~~~gpL~GvPv~vKD~~~v~G~~tt~Gs~~~~~--~~ 85 (460)
T TIGR00132 8 KEISIKEVLEASLDRIEANKDKINAFLEVTVEKALKQAKKLDKAILTPLAGIPIAVKDNISTKGIVTTCASKILEN--YI 85 (460)
T ss_pred CCCCHHHHHHHHHHHHHHhcccCCeEEEcCHHHHHHHHHHHHHhccCCcCCcEEEEecccccCCcccCcCChhhcc--CC
Confidence 558999999999999999999999999998877666554221 12899999999999999999999999999975 57
Q ss_pred CCCChHHHHHHHhCCCeEeeecccccccccCCCCCCCCCCCCCCCCCCCCCCCCchHHHHHHHhcCCceeeccCCCCccc
Q 007401 105 AERTAVVVTLLLKNGATCIGKTVLDEFAFGITGENKHYGTPVNPQMPSHIPGGSSSGSAVAVAAQLVDFALGTDTIGCVR 184 (605)
Q Consensus 105 ~~~da~~V~rL~~aGai~~GKt~~~e~~~~~~~~n~~~G~~~NP~~~~~~~GGSSgGsaaaVAag~~~~a~GtD~gGSiR 184 (605)
+.+||++|+||++||||++||||||||+++.+|+|++||+|+||||++|+||||||||||+||+|++|+|+|||||||||
T Consensus 86 ~~~dA~vV~~L~~aGAii~GKTn~~E~a~~~~~~n~~~G~t~NP~~~~~~~GGSSgGsAaaVAaG~~~~alGtDtgGSIR 165 (460)
T TIGR00132 86 PPYDATVIERLKQAGALIIGKTNMDEFAMGSSTETSAFGPTKNPWNLDRVPGGSSGGSAAAVAADLAPFSLGSDTGGSIR 165 (460)
T ss_pred CCCchHHHHHHHHCCCEEEEEechhHHhcCCCCCCCCCCCCCCCCCCCCCCCcCcHHHHHHHHcCCCCeEeecCCCCcch
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhcccccccCCCCCccCCCCccCCCCCccccccccCHHHHHHHHHHHccCCCCCc-----------------ccCce
Q 007401 185 VPASFCGILGYRPSHGTVSMIGVLPNSQSLDTVGLLARNASILHRVGHVLLQLNAVEP-----------------RRARR 247 (605)
Q Consensus 185 ~PAa~~Gv~GlkPt~G~v~~~G~~p~~~~~d~~G~~ar~~~d~~~v~~~~~~~~~~~~-----------------~~~~~ 247 (605)
+||+||||||||||+||||+.|++|+++++|++|||+||++|++.+++++.+.+..+. ..+.+
T Consensus 166 iPAa~cGv~G~KPT~G~vs~~G~~~~~~~~d~~Gp~arsv~D~a~~~~~l~g~~~~d~~~~~~~~~~~~~~~~~~~~~lr 245 (460)
T TIGR00132 166 QPASFCGVVGFKPTYGRVSRYGLVAYASSLDQIGPFARTVEDIALLLDVISGHDKRDSTSAKVPDPEFFEELKKDLKGLK 245 (460)
T ss_pred hhhHhcCceeECCCCCcCCCCCCcCcccCCCcccCeeCCHHHHHHHHHHHcCCCCCCCcccCCCccchhhhhhcccCCCE
Confidence 9999999999999999999999999999999999999999999999999886532211 12234
Q ss_pred eeeccchhhhcCCchhhHHHHHHHHHHHHhCCCCCccccccccccccCcchhhhhhcCCCCCCchhHHHHHHHHHHHhhh
Q 007401 248 LIFADDIFQLSKVPKLKTIHVISKAIESLSGYQNPEHMNVGQYIASNVPSLKGLRAQSTSPENGTATLKALSSVMLSLQR 327 (605)
Q Consensus 248 l~~~~~~~~~~~~~~~~~~~~~~~a~~~l~g~~~~~~~~l~~~v~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 327 (605)
+.+..+.+. ..++++.+++.++++.|+..+. +.++...|.+......+ ......+....+..
T Consensus 246 ig~~~~~~~---~~~~~v~~a~~~a~~~L~~~G~-------~v~~~~~p~~~~~~~~~--------~~~~~~e~~~~~~~ 307 (460)
T TIGR00132 246 VGVVKEFSE---EMDKEVQEKFENALEVLEELGA-------EIVEVSFPHVKYALPIY--------YIISPSEASSNLAR 307 (460)
T ss_pred EEEECcccc---cCCHHHHHHHHHHHHHHHHCCC-------EEEEeCCCcHHHHHHHH--------HHHHHHHHHHHHhc
Confidence 555444321 2457888999999998864332 11122233332111100 00000011110111
Q ss_pred h---------hhHhhHHHHHHh-cCCCCChhHHHHHHHHhcCC-----HHHHHHHHHHHHHHHHHHHHHhCCCcEEEEeC
Q 007401 328 Y---------EFKTIYEEWVKS-AKPRLGYNVFERVLEAINTT-----QDNIKILYKVRNEMRAALQRLLKDDKILVIPT 392 (605)
Q Consensus 328 ~---------e~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~s-----~~~~~~a~~~r~~~~~~~~~~~~~~Dvll~Pt 392 (605)
+ .....+.+++.. ....+++.++.++..+...+ ..+|.++++.|.++++.+.++|+++|+||+||
T Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~a~~~r~~~~~~~~~~~~~~D~ll~Pt 387 (460)
T TIGR00132 308 YDGIRYGYRIEEPNSLKELYAKTRAEGFGEEVKRRIMLGNYALSAGYYDKYYLKAQKVRTLIIDDFLKLFEEVDVIVSPT 387 (460)
T ss_pred cccccccccccccccHHHHHhhcchhhcCHHHHHHHHccccccccchhhHHHHHHHHHHHHHHHHHHHHHhcCCEEEeCC
Confidence 1 001112233332 23457788888876665443 34488999999999999999999999999999
Q ss_pred CCCCCccCCccccc-chhhhhchhhhcccccccCCceeeeecccC-CCCCceeEEeeccCCchhHHhHHHHHHh
Q 007401 393 VSDPPLKLNTKKTY-SAEFHDRTLVLSSIGSMSGCCQVAIPIGKY-NEHPISISFITYHGGDKFLLDTVLDLYD 464 (605)
Q Consensus 393 ~~~~ap~~~~~~~~-~~~~~~~~~~~t~~~nl~G~PaisvP~G~~-~glp~g~~~~~~~~~d~~ll~~a~~l~~ 464 (605)
+|.+||++++.... ...+. . ..||.++|++|+|++|||+|.. +|+|+|+|+++++++|..+|+++..+++
T Consensus 388 ~~~~a~~~~~~~~~~~~~~~-~-~~~t~~~nl~g~PaisvP~g~~~~GlPvGlqlig~~~~D~~lL~~A~~le~ 459 (460)
T TIGR00132 388 APTLPFKIGEKLDDPLEMYL-S-DILTVPANLAGLPAISVPCGVKEKGLPIGLQIIGKCFDDKTLLQVSYAFEQ 459 (460)
T ss_pred CCCCCCCcccccCchHhhhc-c-cceeccccccCCCcEEEecCcCCCCCCeeEEEECCCCchHHHHHHHHHHhh
Confidence 99999999753211 11111 1 1379999999999999999988 8999999999999999999999998864
No 15
>PRK08310 amidase; Provisional
Probab=100.00 E-value=5.4e-85 Score=679.69 Aligned_cols=390 Identities=40% Similarity=0.632 Sum_probs=320.3
Q ss_pred CCCcCceeeecccCCCCCCCCCCCCCCCCCceEEEeeccCCCCcccCCCchhhhhcCCCCCCChHHHHHHHhCCCeEeee
Q 007401 46 RVDFGAFLERFELIPFPQPPPPAARQPLAGLKFAIKDVFDVKGYVTGFGSPDWKRDHHEAERTAVVVTLLLKNGATCIGK 125 (605)
Q Consensus 46 ~~~~~a~~~~~~~~a~~~a~~~~~~gpL~Gvp~~vKD~~~~~G~~tt~Gs~~~~~~~~~~~~da~~V~rL~~aGai~~GK 125 (605)
++.+|||+...+.- ..++..||||||||+|||+|+++|++||+||+.|.+.+.++.+||++|+|||+||||++||
T Consensus 4 ~~~~~a~~~~~~~~-----~~~~~~gpL~GvPi~vKD~~~v~G~~tt~Gs~~~~~~~~~~~~dA~vV~~L~~aGAii~GK 78 (395)
T PRK08310 4 HDPFNAFIAKPDKP-----LPHAASGPLAGLRFAVKDVFDVAGYVTGCGNPDWLAESPVATRTAPAVEKLLAAGARFVGK 78 (395)
T ss_pred CCccccccccCCCC-----CCCCCCCCcCCCeEEEeeccccCCCccCCCCHHHHhcCCCCCCCHHHHHHHHHCCCEEEEe
Confidence 46799999986531 1245779999999999999999999999999998643457789999999999999999999
Q ss_pred cccccccccCCCCCCCCCCCCCCCCCCCCCCCCchHHHHHHHhcCCceeeccCCCCccchhhhhcccccccCCCCCccCC
Q 007401 126 TVLDEFAFGITGENKHYGTPVNPQMPSHIPGGSSSGSAVAVAAQLVDFALGTDTIGCVRVPASFCGILGYRPSHGTVSMI 205 (605)
Q Consensus 126 t~~~e~~~~~~~~n~~~G~~~NP~~~~~~~GGSSgGsaaaVAag~~~~a~GtD~gGSiR~PAa~~Gv~GlkPt~G~v~~~ 205 (605)
||||||+++.+|+|++||+|+||||++|+|||||||||||||+|++|+++|||||||||+||+||||||||||+||||+.
T Consensus 79 Tn~~E~~~~~~~~n~~~G~t~NP~~~~~~pGGSSgGsAaaVAag~~~~aiGtDtGGSIRiPAa~cGv~G~KPT~Grvs~~ 158 (395)
T PRK08310 79 TQTDELAFSLNGQNAHYGTPVNPAAPDRVPGGSSSGSAAAVAGGLADFALGTDTGGSVRAPASFCGLYGLRPTHGRISLE 158 (395)
T ss_pred ccchHHhcCCCCCCCCCCCCCCCCCCCCCCCCCchHHHHHHHcCCcceEEecCCCCCeecchHhcCeeEeecCCCcccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccCCCCCccccccccCHHHHHHHHHHHccCCCCCcccCceeeeccchhhhcCCchhhHHHHHHHHHHHHhCCCCCccc
Q 007401 206 GVLPNSQSLDTVGLLARNASILHRVGHVLLQLNAVEPRRARRLIFADDIFQLSKVPKLKTIHVISKAIESLSGYQNPEHM 285 (605)
Q Consensus 206 G~~p~~~~~d~~G~~ar~~~d~~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~~l~g~~~~~~~ 285 (605)
|+.|+++++|++|||+||++|++.+++++.+.+..+...+.++.+..+.+ ...++++.++++++++.|+...
T Consensus 159 G~~~~~~~~d~~Gp~arsv~D~~~~~~~l~g~~~~~~~~~~ri~~~~~~~---~~~~~~v~~a~~~a~~~L~~~~----- 230 (395)
T PRK08310 159 GVMPLAPSFDTVGWFARDIALLERVGEVLLGDDAQEFPLTQRLLIPVDLF---ALLDPAVRAALEAALARLRPHL----- 230 (395)
T ss_pred CCcccccCCCeeeeeeCCHHHHHHHHHHHcCCCcccCCcCceEEEecccc---ccCCHHHHHHHHHHHHHHHHhC-----
Confidence 99999999999999999999999999999875433332345666655433 2246788899999998885311
Q ss_pred cccccccccCcchhhhhhcCCCCCCchhHHHHHHHHHHHhhhhhhHhhHHHHHHhcCCCCChhHHHHHHHHhcCCHHHHH
Q 007401 286 NVGQYIASNVPSLKGLRAQSTSPENGTATLKALSSVMLSLQRYEFKTIYEEWVKSAKPRLGYNVFERVLEAINTTQDNIK 365 (605)
Q Consensus 286 ~l~~~v~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 365 (605)
++.++...+.. .+..+...+..+...+....+..+.+.....+++.++.+++.+..++..+|.
T Consensus 231 --g~vv~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 293 (395)
T PRK08310 231 --GPAKPASVPPL---------------SLDEWYEAFRVLQAAEAWETHGAWISSGNPQLGPGVADRFAAGAEVTADQVE 293 (395)
T ss_pred --CceeeecCCcc---------------cHHHHHHHHHHHHHHHHHHHHHHHHHhchhhcCHHHHHHHHhhccCCHHHHH
Confidence 11121111110 0111112222233334455566666666677899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhCCCcEEEEeCCCCCCccCCcccccchhhhhchhhhcccccccCCceeeeecccCCCCCceeEE
Q 007401 366 ILYKVRNEMRAALQRLLKDDKILVIPTVSDPPLKLNTKKTYSAEFHDRTLVLSSIGSMSGCCQVAIPIGKYNEHPISISF 445 (605)
Q Consensus 366 ~a~~~r~~~~~~~~~~~~~~Dvll~Pt~~~~ap~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~G~~~glp~g~~~ 445 (605)
++.+.|..+++.+.++|+++|+||+||+|.+||+++........+...++.||.++|++|+|+++||+|..+|+|+|+|+
T Consensus 294 ~a~~~r~~~~~~~~~~~~~~Dvll~Pt~~~~a~~~~~~~~~~~~~~~~~~~~t~~~N~~G~PaisvP~g~~~glPvglQi 373 (395)
T PRK08310 294 AARARRAAFARELAALLGPDAVLLLPTVPGAAPLRGAPFEALEAYRERALRLLCIAGLAGLPQISLPLASVDGAPFGLSL 373 (395)
T ss_pred HHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCCccCCCccchHHHHHHHHHhhceeehhcCCCeEEEECCCCCCCCEEEEE
Confidence 99999999999999999999999999999999998754222222223344689999999999999999988999999999
Q ss_pred eeccCCchhHHhHHHHHHhH
Q 007401 446 ITYHGGDKFLLDTVLDLYDS 465 (605)
Q Consensus 446 ~~~~~~d~~ll~~a~~l~~~ 465 (605)
++++++|..+++++..+++.
T Consensus 374 vg~~~~D~~lL~~a~~le~~ 393 (395)
T PRK08310 374 IGPRGSDRSLLALAQTIAAA 393 (395)
T ss_pred ECCCCCHHHHHHHHHHHHhh
Confidence 99999999999999998763
No 16
>PRK07235 amidase; Provisional
Probab=100.00 E-value=8e-85 Score=694.66 Aligned_cols=417 Identities=21% Similarity=0.251 Sum_probs=332.6
Q ss_pred hhHHHHHHHHHhhcCcccCCCCcCceeeecccCCCCCCC------CCCCCCCCCCceEEEeeccCCCCcccCCCchhhhh
Q 007401 27 GFVVLAETLRRRRNPKLNGRVDFGAFLERFELIPFPQPP------PPAARQPLAGLKFAIKDVFDVKGYVTGFGSPDWKR 100 (605)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~a~~~a~------~~~~~gpL~Gvp~~vKD~~~~~G~~tt~Gs~~~~~ 100 (605)
+.+++.|+++..++++...++..|++.....++++..|. .+...||||||||+|||||+|+|+|||+||+.+.+
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~g~~~gpL~GvPiavKD~i~v~G~ptt~Gs~~~~~ 115 (502)
T PRK07235 36 ASLDAYDRIDELPDEIPPVKYPRTPGYRPEAEENPYGAWYVKTSIKGAAEGKLAGKTVALKDNVAVAGVPMMNGSSTLEG 115 (502)
T ss_pred hccCHHHHHHHHhhcccccCCCcccccccCcccChhcChhhhhccCCCCCCCcCCceEEEecccccCCcccCccChhhcC
Confidence 569999999999999999999999999887777655442 45678999999999999999999999999999975
Q ss_pred cCCCCCCChHHHHHHHhCCCeEeeecccccccccCCCCCCCCCCCCCCCCCCCCCCCCchHHHHHHHhcCCceeeccCCC
Q 007401 101 DHHEAERTAVVVTLLLKNGATCIGKTVLDEFAFGITGENKHYGTPVNPQMPSHIPGGSSSGSAVAVAAQLVDFALGTDTI 180 (605)
Q Consensus 101 ~~~~~~~da~~V~rL~~aGai~~GKt~~~e~~~~~~~~n~~~G~~~NP~~~~~~~GGSSgGsaaaVAag~~~~a~GtD~g 180 (605)
.++.+||++|+||++|||||+||||||||+++.+++|++||+|+||||++|+|||||||||||||+|++|+|||||||
T Consensus 116 --~~p~~DA~vV~rL~~AGAii~GKTn~~Ef~~~~~t~n~~~G~t~NP~~~~~~~GGSSgGsAAaVAaG~v~~aiGtDtG 193 (502)
T PRK07235 116 --FVPSFDATVVTRLLDAGATIVGKATCEDLCFSGGSHTSDPGPVHNPRDPGYSAGGSSSGSAALVAAGEVDMAIGGDQG 193 (502)
T ss_pred --CCCCCCHHHHHHHHHCCCEEEEEecchhhhcCCCCCCCCCCCCCCCCCCCCCCCCCcHHHHHHHHcCCCCeEEecCCC
Confidence 678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccchhhhhcccccccCCCCCccCCCCccCCCCCccccccccCHHHHHHHHHHHccCCCCCcc-----------------
Q 007401 181 GCVRVPASFCGILGYRPSHGTVSMIGVLPNSQSLDTVGLLARNASILHRVGHVLLQLNAVEPR----------------- 243 (605)
Q Consensus 181 GSiR~PAa~~Gv~GlkPt~G~v~~~G~~p~~~~~d~~G~~ar~~~d~~~v~~~~~~~~~~~~~----------------- 243 (605)
||||||||||||||||||+||||+.|++|+++++|++|||+||++|++.+++++.+.+..++.
T Consensus 194 GSIRiPAa~cGvvGlKPT~G~vp~~G~~~~~~sld~~Gpmarsv~D~a~ll~viag~d~~d~~~~~~~~~~~~~~~l~~~ 273 (502)
T PRK07235 194 GSIRIPSAWCGIYGMKPTHGLVPYTGAFPIERTIDHLGPMTATVRDNALLLEVIAGRDGLDPRQPAQPPVDDYTAALDRG 273 (502)
T ss_pred CCcCccHHHcCcceecCCCcccCCCCCCCcccccCeeeceeCCHHHHHHHHHHHcCCCCCCccccccCCccchhHHhccC
Confidence 999999999999999999999999999999999999999999999999999999875432211
Q ss_pred -cCceeeeccchhhhcCCchhhHHHHHHHHHHHHhCCCCCccccccccccc-cCcchhhhhhcCCCCCCchhHHHHHH-H
Q 007401 244 -RARRLIFADDIFQLSKVPKLKTIHVISKAIESLSGYQNPEHMNVGQYIAS-NVPSLKGLRAQSTSPENGTATLKALS-S 320 (605)
Q Consensus 244 -~~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~~l~g~~~~~~~~l~~~v~~-~~p~~~~~~~~~~~~~~~~~~~~~~~-~ 320 (605)
.+.++.+..+.+.. ...++++.++++++++.|+..++ .|++ .+|........ +..+. +
T Consensus 274 ~~~lrIgv~~~~~~~-~~~~~~v~~a~~~a~~~L~~~G~--------~V~~v~~p~~~~~~~~----------~~~~~~~ 334 (502)
T PRK07235 274 VKGLKIGILREGFGL-PNSEPEVDEAVRAAAKRLEDLGA--------TVEEVSIPLHRLALAI----------WNPIATE 334 (502)
T ss_pred CcCCEEEEeccccCC-CCCCHHHHHHHHHHHHHHHHCCC--------EEEEeCCCchhhHHHH----------HHHHHHH
Confidence 12245554433311 12357899999999999864332 2222 22322111000 00000 0
Q ss_pred HH-H-Hhh------------hhhhHhhHHHHHHhcCCCCChhHHHHHHHHh----cCCHHHHHHHHHHHHHHHHHHHHHh
Q 007401 321 VM-L-SLQ------------RYEFKTIYEEWVKSAKPRLGYNVFERVLEAI----NTTQDNIKILYKVRNEMRAALQRLL 382 (605)
Q Consensus 321 ~~-~-~l~------------~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~s~~~~~~a~~~r~~~~~~~~~~~ 382 (605)
.. . .+. ..++...+..+.......+++.++.++..+. .++..+|.++++.|+++++.++++|
T Consensus 335 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~y~~a~~~r~~~~~~~~~~~ 414 (502)
T PRK07235 335 GATAQMMLGNGYGFNWKGLYDTGLLDAFGAGWRERADDLSETVKLVMLLGQYGLERYHGRYYAKARNLARRLRAAYDEAL 414 (502)
T ss_pred HHHHHhhhccccccccccccchhHHHHHhhhhhcchhhcCHHHHHHHHhcccccccCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 0 000 0011122222233344568899998887665 3577899999999999999999999
Q ss_pred CCCcEEEEeCCCCCCccCCcccccchhhhh---chhhhcccccccCCceeeeecccCCCCCceeEEeeccCCchhHHhHH
Q 007401 383 KDDKILVIPTVSDPPLKLNTKKTYSAEFHD---RTLVLSSIGSMSGCCQVAIPIGKYNEHPISISFITYHGGDKFLLDTV 459 (605)
Q Consensus 383 ~~~Dvll~Pt~~~~ap~~~~~~~~~~~~~~---~~~~~t~~~nl~G~PaisvP~G~~~glp~g~~~~~~~~~d~~ll~~a 459 (605)
+++|+||+||+|.+||+++........+.. .+..||.+||++|+|++|||+|+.+|||+|+|+++++++|..+++++
T Consensus 415 ~~~Dvll~Pt~p~~a~~~~~~~~~~~~~~~~~~~~~~~t~~~Nl~G~PalsvP~g~~~GlPvGlQlvg~~~~D~~lL~~A 494 (502)
T PRK07235 415 RKYDLLVMPTTPMVATPLPAPDASREEYVSRALEMIANTAPFDVTGHPAMSVPCGLVDGLPVGLMLVGRHFDEATILRAA 494 (502)
T ss_pred hcCCEEeeCCCCCCCCCcccccCchHHHHHHHHhhhccCccchhhCCCeEEEECCcCCCCCeEEEEeCCCCCHHHHHHHH
Confidence 999999999999999998753222222221 23457999999999999999999999999999999999999999999
Q ss_pred HHHHh
Q 007401 460 LDLYD 464 (605)
Q Consensus 460 ~~l~~ 464 (605)
..+++
T Consensus 495 ~~~E~ 499 (502)
T PRK07235 495 AAFEA 499 (502)
T ss_pred HHHHh
Confidence 99876
No 17
>PRK07488 indole acetimide hydrolase; Validated
Probab=100.00 E-value=2.4e-85 Score=698.75 Aligned_cols=419 Identities=26% Similarity=0.313 Sum_probs=331.7
Q ss_pred hhHHHHHHHhhhh-----HHHHHHHHHhhcCcccCCCCcCceeeecccCCCCCCC-------CCCCCCCCCCceEEEeec
Q 007401 16 KVWVVIGVSVVGF-----VVLAETLRRRRNPKLNGRVDFGAFLERFELIPFPQPP-------PPAARQPLAGLKFAIKDV 83 (605)
Q Consensus 16 ~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~a~~~a~-------~~~~~gpL~Gvp~~vKD~ 83 (605)
++...++++|+.+ +|++|+++.+++||++.+ .+|||++..+++++++|+ .+...| ||||||+|||+
T Consensus 7 ~~~~~~~~~l~~~l~~g~~s~~ev~~~~l~ri~~~~-~lna~~~~~~~~al~~A~~~d~~~~~g~~~g-L~GvPi~vKD~ 84 (472)
T PRK07488 7 DVASLSLTEAAAALRSGRLSCLELVEALLARAAALA-PLNAFTTVDAEGALAAARRIDAQRAAGAALL-LAGVPIVIKDN 84 (472)
T ss_pred hhhhCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhC-cCCEEEEcCHHHHHHHHHHHHHHHhcCCCCC-cCceEEEEEcc
Confidence 3444577777755 899999999999999876 699999998877666553 234456 99999999999
Q ss_pred cCCCCcccCCCchhhhhcCCCCCCChHHHHHHHhCCCeEeeecccccccccCCCCCCCCCCCCCCCCCCCCCCCCchHHH
Q 007401 84 FDVKGYVTGFGSPDWKRDHHEAERTAVVVTLLLKNGATCIGKTVLDEFAFGITGENKHYGTPVNPQMPSHIPGGSSSGSA 163 (605)
Q Consensus 84 ~~~~G~~tt~Gs~~~~~~~~~~~~da~~V~rL~~aGai~~GKt~~~e~~~~~~~~n~~~G~~~NP~~~~~~~GGSSgGsa 163 (605)
|+|+|++||+||+.|.+ .++.+||++|+|||+||||++||||||||+++.+|+|++||+|+||||++++|||||||||
T Consensus 85 ~~v~G~~tt~Gs~~~~~--~~~~~dA~vV~rLr~aGAii~GKTn~~E~~~~~~~~n~~~G~t~NP~~~~~~~GGSSgGsA 162 (472)
T PRK07488 85 INTAGMPTTAGTPALLG--FVPATDAPVVQRLLDAGAVPLGKANMHELAFGITSNNGAFGAVRNPYDPARIAGGSSGGTA 162 (472)
T ss_pred cccCCCccCcCChhhcc--CCCCCCHHHHHHHHHCCCeeeeccChhHHhcCCCCCCCCCCCCCCCCCCCCCCCCCchHHH
Confidence 99999999999999875 5678999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCceeeccCCCCccchhhhhcccccccCCCCCccCCCCccCCCCCccccccccCHHHHHHHHHHHccCCCCCc-
Q 007401 164 VAVAAQLVDFALGTDTIGCVRVPASFCGILGYRPSHGTVSMIGVLPNSQSLDTVGLLARNASILHRVGHVLLQLNAVEP- 242 (605)
Q Consensus 164 aaVAag~~~~a~GtD~gGSiR~PAa~~Gv~GlkPt~G~v~~~G~~p~~~~~d~~G~~ar~~~d~~~v~~~~~~~~~~~~- 242 (605)
||||+|++|+|||||||||||+|||||||||||||+||||+.|++|+++++|++|||+||++|++.+++++.+.+..+.
T Consensus 163 aaVAaG~~~~alGtDtgGSIRiPAa~cGvvG~KPT~G~vs~~G~~p~~~~~d~~Gp~arsv~D~a~~~~vl~g~d~~~~~ 242 (472)
T PRK07488 163 AAVAARLAPAGLGTDTGGSVRIPAALCGVVGLRPTVGRYSGDGVVPISHTRDTVGPIARSVADLALLDAVITGDAALPAP 242 (472)
T ss_pred HHHHcCCCceeeecCCCCCeecChHhhCceeeccCCCCCCCCCcccccccCCcccCccCCHHHHHHHHHHhcCCCCCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999887543221
Q ss_pred --ccCceeeeccchhhhcCCchhhHHHHHHHHHHHHhCCCCCccccccccc-cccCcchhhhhhcCCCCCCchhHHHHHH
Q 007401 243 --RRARRLIFADDIFQLSKVPKLKTIHVISKAIESLSGYQNPEHMNVGQYI-ASNVPSLKGLRAQSTSPENGTATLKALS 319 (605)
Q Consensus 243 --~~~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~~l~g~~~~~~~~l~~~v-~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 319 (605)
..+.++.+..+.+ ....++++.++++++++.|+..+. .| +...|.+.++...
T Consensus 243 ~~~~~lrig~~~~~~--~~~~~~~v~~a~~~a~~~L~~~G~--------~v~~~~~~~~~~~~~~--------------- 297 (472)
T PRK07488 243 VALAGLRLGVPAAPF--WDGLDPDVAAVAEAALAKLAAAGV--------TFVELDLPGLHELNEA--------------- 297 (472)
T ss_pred cCcCCCEEEEEcchh--ccCCCHHHHHHHHHHHHHHHHCCC--------EEEeeCCcCHHHHhhh---------------
Confidence 2334566654332 122467889999999998863332 22 1222332211000
Q ss_pred HHHHHhhhhhhHhhHHHHHHhcC----------CCCChhHHHHHHHH---hcCCHHHHHHHHHH-HHHHHHHHHHHhC--
Q 007401 320 SVMLSLQRYEFKTIYEEWVKSAK----------PRLGYNVFERVLEA---INTTQDNIKILYKV-RNEMRAALQRLLK-- 383 (605)
Q Consensus 320 ~~~~~l~~~e~~~~~~~~~~~~~----------~~~~~~~~~~~~~~---~~~s~~~~~~a~~~-r~~~~~~~~~~~~-- 383 (605)
....+..++....+..++.... ...++.++.+++.+ ..++..+|.++++. |..+++.+.++|+
T Consensus 298 -~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~~~~~~~~~~~~~~ 376 (472)
T PRK07488 298 -VGFPIALYEALADLRAYLRENGAGVSFEELVARIASPDVRAIFRDLLDPPQISEDAYRAALDVGRPRLQAWYRQAFARH 376 (472)
T ss_pred -HHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHhhccCHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 0011122233333333332221 12256666655433 35788999999888 9999999999998
Q ss_pred CCcEEEEeCCCCCCccCCcccc------cchhhhhchhhhcccccccCCceeeeecccC-CCCCceeEEeeccCCchhHH
Q 007401 384 DDKILVIPTVSDPPLKLNTKKT------YSAEFHDRTLVLSSIGSMSGCCQVAIPIGKY-NEHPISISFITYHGGDKFLL 456 (605)
Q Consensus 384 ~~Dvll~Pt~~~~ap~~~~~~~------~~~~~~~~~~~~t~~~nl~G~PaisvP~G~~-~glp~g~~~~~~~~~d~~ll 456 (605)
++|+||+||+|.+||++++... ....+ ..++.+|.++|++|+|++|||+|++ +|+|+|+|+++++++|..|+
T Consensus 377 ~~D~ll~Pt~~~~a~~~~~~~~~~~~~~~~~~~-~~~~~~t~~~n~~G~PaisvP~g~~~~glPvGlqlig~~~~d~~LL 455 (472)
T PRK07488 377 GLDAILFPTTPLTAPPIGDDDTVILNGAAVPTF-ARVIRNTDPASNAGLPGLSLPAGLTPHGLPVGLELDGPAGSDRRLL 455 (472)
T ss_pred CCCEEEeCCCCCCCccccccccccccccchhhh-hhhhcccccccccCCCeEEEecCCCCCCCCeeEEEeCCCCCHHHHH
Confidence 7899999999999999975311 11122 2344579999999999999999987 89999999999999999999
Q ss_pred hHHHHHHhH
Q 007401 457 DTVLDLYDS 465 (605)
Q Consensus 457 ~~a~~l~~~ 465 (605)
+++..+++.
T Consensus 456 ~~A~~lE~~ 464 (472)
T PRK07488 456 AIGRALERV 464 (472)
T ss_pred HHHHHHHHh
Confidence 999999874
No 18
>PRK00012 gatA aspartyl/glutamyl-tRNA amidotransferase subunit A; Reviewed
Probab=100.00 E-value=1.1e-85 Score=700.55 Aligned_cols=414 Identities=25% Similarity=0.330 Sum_probs=323.9
Q ss_pred hhHHHHHHHHHhhcCcccCCCCcCceeeecccCCCCCCC-------CCCCCCCCCCceEEEeeccCCCCcccCCCchhhh
Q 007401 27 GFVVLAETLRRRRNPKLNGRVDFGAFLERFELIPFPQPP-------PPAARQPLAGLKFAIKDVFDVKGYVTGFGSPDWK 99 (605)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~a~~~a~-------~~~~~gpL~Gvp~~vKD~~~~~G~~tt~Gs~~~~ 99 (605)
+.+|++|+++.+++||++.|+.+|||++..+++++++|+ .+. .||||||||+|||+|+|+|++||+||..|.
T Consensus 4 g~~t~~ev~~~~l~ri~~~~~~lna~~~~~~~~al~~A~~~d~~~~~g~-~gpL~GvPv~vKD~~~v~G~~tt~Gs~~~~ 82 (459)
T PRK00012 4 KEISAVELTQAYLDRIEEVDPKLNAFITVTEEEALAQAKAADAKLAAGE-AGPLAGIPIAIKDNICTKGIRTTCASKILE 82 (459)
T ss_pred CcCCHHHHHHHHHHHHHHhcccCCeEEEeCHHHHHHHHHHHHHHHhcCC-CCccCCeEEEEecccccCCCccCccCHhhc
Confidence 558999999999999999999999999998877766554 233 799999999999999999999999999997
Q ss_pred hcCCCCCCChHHHHHHHhCCCeEeeecccccccccCCCCCCCCCCCCCCCCCCCCCCCCchHHHHHHHhcCCceeeccCC
Q 007401 100 RDHHEAERTAVVVTLLLKNGATCIGKTVLDEFAFGITGENKHYGTPVNPQMPSHIPGGSSSGSAVAVAAQLVDFALGTDT 179 (605)
Q Consensus 100 ~~~~~~~~da~~V~rL~~aGai~~GKt~~~e~~~~~~~~n~~~G~~~NP~~~~~~~GGSSgGsaaaVAag~~~~a~GtD~ 179 (605)
+ .++.+||++|+|||+|||||+||||||||+++.+|+|++||+|+||||++|+|||||||||||||+|++|+||||||
T Consensus 83 ~--~~~~~da~vV~~Lr~aGAiilGkTn~~E~~~~~~~~n~~~G~t~NP~~~~~~~GGSSgGsAaaVAaG~~~~alGtDt 160 (459)
T PRK00012 83 N--YVPPYDATVVEKLKAAGAVILGKTNMDEFAMGSSTENSAFGPTKNPWDLERVPGGSSGGSAAAVAAGLAPAALGSDT 160 (459)
T ss_pred c--CCCCcchHHHHHHHHCCCEEEeeccchhhhcCCCCCCCCCCCcCCCCCCCCCCCCCcHHHHHHHHcCCCceEEeeCC
Confidence 5 67889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccchhhhhcccccccCCCCCccCCCCccCCCCCccccccccCHHHHHHHHHHHccCCCCCc-----------------
Q 007401 180 IGCVRVPASFCGILGYRPSHGTVSMIGVLPNSQSLDTVGLLARNASILHRVGHVLLQLNAVEP----------------- 242 (605)
Q Consensus 180 gGSiR~PAa~~Gv~GlkPt~G~v~~~G~~p~~~~~d~~G~~ar~~~d~~~v~~~~~~~~~~~~----------------- 242 (605)
|||||||||||||||||||+||||+.|++|+++++|++|||+||++|++.+++++.+.+..+.
T Consensus 161 gGSiRiPAa~cGvvG~KPT~G~vp~~G~~~~~~~~d~~Gp~arsv~D~a~~~~~l~g~d~~d~~~~~~~~~~~~~~~~~~ 240 (459)
T PRK00012 161 GGSIRQPAAFCGVVGLKPTYGRVSRYGLIAFASSLDQIGPFARTVEDAALLLNAIAGHDPKDSTSADVPVPDYTAALGKD 240 (459)
T ss_pred CCccchhHHHcCceeecCCCCcccCCCCcCcccCCCcccCccCCHHHHHHHHHHHhCCCCCCcccccCCCCchhhhhccc
Confidence 999999999999999999999999999999999999999999999999999999876432210
Q ss_pred ccCceeeeccchhhhcCCchhhHHHHHHHHHHHHhCCCCCcccccccccc-ccCcchhhhhhcCCCCCCchhHHHHHHHH
Q 007401 243 RRARRLIFADDIFQLSKVPKLKTIHVISKAIESLSGYQNPEHMNVGQYIA-SNVPSLKGLRAQSTSPENGTATLKALSSV 321 (605)
Q Consensus 243 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~~l~g~~~~~~~~l~~~v~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (605)
..+.++.+..+.+ ....++++.++++++++.|+..+. .|+ ...|.+.+....+ ......+.
T Consensus 241 ~~~lrig~~~~~~--~~~~~~~v~~a~~~a~~~L~~~G~--------~v~~~~~~~~~~~~~~~--------~~~~~~~~ 302 (459)
T PRK00012 241 IKGLKIGVPKEYF--GEGLDPEVKEAVEAAIKKLEDLGA--------EIVEVSLPHTKYALPAY--------YIIAPAEA 302 (459)
T ss_pred ccccEEEEEcccc--cccCCHHHHHHHHHHHHHHHHCCC--------EEEEeCCCchHHHHHHH--------HHHHHHHH
Confidence 1223555554432 122357889999999998863332 221 1223322111000 00000010
Q ss_pred HHHhhhh---------hhHhhHHHHHHh-cCCCCChhHHHHHHHHhcCC-----HHHHHHHHHHHHHHHHHHHHHhCCCc
Q 007401 322 MLSLQRY---------EFKTIYEEWVKS-AKPRLGYNVFERVLEAINTT-----QDNIKILYKVRNEMRAALQRLLKDDK 386 (605)
Q Consensus 322 ~~~l~~~---------e~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~s-----~~~~~~a~~~r~~~~~~~~~~~~~~D 386 (605)
...+..+ .....+.+++.. ....+++.++.++..+..++ ...|.++.+.|.++++.+.++|+++|
T Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~a~~~r~~~~~~~~~~~~~~D 382 (459)
T PRK00012 303 SSNLARYDGVRYGYRAEDAKDLEEMYEKTRSEGFGEEVKRRIMLGTYVLSAGYYDAYYLKAQKVRTLIKQDFEKAFEKVD 382 (459)
T ss_pred HHHHhhcccccccccccccccHHHHHhhhhhhccCHHHHHHHHhCcchhccccchHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 0001010 000112222222 22357788888887655432 34588899999999999999999999
Q ss_pred EEEEeCCCCCCccCCccccc-chhhhhchhhhcccccccCCceeeeecccC-CCCCceeEEeeccCCchhHHhHHHHHH
Q 007401 387 ILVIPTVSDPPLKLNTKKTY-SAEFHDRTLVLSSIGSMSGCCQVAIPIGKY-NEHPISISFITYHGGDKFLLDTVLDLY 463 (605)
Q Consensus 387 vll~Pt~~~~ap~~~~~~~~-~~~~~~~~~~~t~~~nl~G~PaisvP~G~~-~glp~g~~~~~~~~~d~~ll~~a~~l~ 463 (605)
+||+||+|.+||+++..... ...+. . +.||.++|++|+|++|||+|.. +|+|+|+|+++++++|..|++++..++
T Consensus 383 ~ll~Pt~~~~a~~~~~~~~~~~~~~~-~-~~~t~~~n~~G~PaisvP~g~~~~glPvGlqlvg~~~~D~~LL~~a~~~E 459 (459)
T PRK00012 383 VILGPTAPTTAFKIGEKTDDPLAMYL-S-DIFTVPANLAGLPAISVPAGFDDGGLPVGLQLIGKYFDEETLLNVAYAFE 459 (459)
T ss_pred EEEeCCCCCCCcccccccCchHhhhc-c-ccccccccccCCCcEEEecCCCCCCCCEEEEEECCCCchHHHHHHHHHhC
Confidence 99999999999999753211 11121 1 2379999999999999999987 799999999999999999999998764
No 19
>PRK06529 amidase; Provisional
Probab=100.00 E-value=8.5e-85 Score=696.37 Aligned_cols=410 Identities=18% Similarity=0.239 Sum_probs=323.6
Q ss_pred hhHHHHHHHHHhhcCcccCCCCcCceeeecccCCCCCCCCCCC-CCCCCCceEEEeec-cCCCCcccCCCchhhhhcCCC
Q 007401 27 GFVVLAETLRRRRNPKLNGRVDFGAFLERFELIPFPQPPPPAA-RQPLAGLKFAIKDV-FDVKGYVTGFGSPDWKRDHHE 104 (605)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~a~~~a~~~~~-~gpL~Gvp~~vKD~-~~~~G~~tt~Gs~~~~~~~~~ 104 (605)
+.+|++|+++.+++||++.|+.+|||++..+++++++|+.... .+|||||||+|||| |+|+|++||+||..+++ .+
T Consensus 16 g~~s~~e~~~~~l~ri~~~~~~lna~~~~~~e~al~~A~~~d~~~~PL~GvPi~vKD~~~~v~G~~tt~Gs~~~~~--~~ 93 (482)
T PRK06529 16 GQVTPLELVTQAIYKAKKLNPTLNAIVSERYEEALEEAKQRDFSGKPFAGVPIFLKDLGQELKGQLSTSGSRLFKN--YQ 93 (482)
T ss_pred CCCCHHHHHHHHHHHHHHHCCcccEEEecChHHHHHHHHhccccCCCcCCCeEEEecCCcccCCCccCcchHHhcC--CC
Confidence 4499999999999999999999999999988877666553322 35999999999998 79999999999999875 67
Q ss_pred CCCChHHHHHHHhCCCeEeeecccccccccCCCCCCCCCCCCCCCCCCCCCCCCchHHHHHHHhcCCceeeccCCCCccc
Q 007401 105 AERTAVVVTLLLKNGATCIGKTVLDEFAFGITGENKHYGTPVNPQMPSHIPGGSSSGSAVAVAAQLVDFALGTDTIGCVR 184 (605)
Q Consensus 105 ~~~da~~V~rL~~aGai~~GKt~~~e~~~~~~~~n~~~G~~~NP~~~~~~~GGSSgGsaaaVAag~~~~a~GtD~gGSiR 184 (605)
+.+||++|+|||+|||||+||||||||+++.+|+|++||+|+||||++|+|||||||||||||+|++|++||||||||||
T Consensus 94 ~~~Da~vV~rLr~AGAiilGKTn~~E~~~~~~~~n~~~G~t~NP~~~~~~~GGSSgGsAaaVAaG~~~~aiGtDtgGSIR 173 (482)
T PRK06529 94 ATKTDLYVKRLEDLGFIILGRSNTPEFGFKNISDSSLHGPVNLPFDNSRNAGGSSGGAAALVSSGIVALAAASDGGGSIR 173 (482)
T ss_pred CCcchHHHHHHHHCCCeEEEecCchHhhcCCCCCCcCCCCCCCCCCCCCCCCcCcHHHHHHHHcCCCceeeecCCCCCee
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhcccccccCCCCCccCCCCccCCCCCccc-cccccCHHHHHHHHHHHccCCCCCc---------------ccCcee
Q 007401 185 VPASFCGILGYRPSHGTVSMIGVLPNSQSLDTV-GLLARNASILHRVGHVLLQLNAVEP---------------RRARRL 248 (605)
Q Consensus 185 ~PAa~~Gv~GlkPt~G~v~~~G~~p~~~~~d~~-G~~ar~~~d~~~v~~~~~~~~~~~~---------------~~~~~l 248 (605)
+|||||||||||||+||||..++.+.+.+.|++ |||+|+++|++.+++++.+.+..++ ..+.|+
T Consensus 174 iPAa~cGvvGlKPT~Grvp~~~~~~~~~~~~~~~Gpiarsv~D~a~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~lrI 253 (482)
T PRK06529 174 IPASFNGLIGLKPSRGRIPVGPGSYRGWQGASVHFALTKSVRDTRRLLYYLQMYQMESPFPLATLSKESLFQSLQRPLKI 253 (482)
T ss_pred cChHhhCceeEccCCCccCCCCCCccccccccccCCccCcHHHHHHHHHHhhCCCCCCCcccCCcccchhccccCCCCEE
Confidence 999999999999999999987765556677776 7999999999999998875432110 122355
Q ss_pred eeccchhhhcCCchhhHHHHHHHHHHHHhCCCCCcccccccccccc--Cc-chhhhhhcCCCCCCchhHHHHHHHHHHHh
Q 007401 249 IFADDIFQLSKVPKLKTIHVISKAIESLSGYQNPEHMNVGQYIASN--VP-SLKGLRAQSTSPENGTATLKALSSVMLSL 325 (605)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~a~~~l~g~~~~~~~~l~~~v~~~--~p-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 325 (605)
.+..+.+. ....++++.++++++++.|+..+ +.|++. .| .+... ...+..+
T Consensus 254 g~~~~~~~-~~~~~p~v~~a~~~a~~~L~~~G--------~~v~ev~~~p~~~~~~-----------------~~~~~~~ 307 (482)
T PRK06529 254 AFYQRSPD-GSPVSLDAAKALKQAVTFLREQG--------HEVVELEEFPLDMTEV-----------------MRSYYIM 307 (482)
T ss_pred EEECCCCC-CCCCCHHHHHHHHHHHHHHHhCC--------CEEEEcCCCCCCHHHH-----------------HHHHHHH
Confidence 55443221 12246789999999999986333 222221 12 11111 1111112
Q ss_pred hhhhhHhhHHHHHHhc-----CCCCChhHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEeCCCCCCccC
Q 007401 326 QRYEFKTIYEEWVKSA-----KPRLGYNVFERVLEAINTTQDNIKILYKVRNEMRAALQRLLKDDKILVIPTVSDPPLKL 400 (605)
Q Consensus 326 ~~~e~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~s~~~~~~a~~~r~~~~~~~~~~~~~~Dvll~Pt~~~~ap~~ 400 (605)
...+....+..+.+.. ...+.+.++.+++.+..++..+|.++++.|..+++.|.++|+++|+||+||+|++||++
T Consensus 308 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~r~~~~~~~~~~f~~~D~ll~Pt~~~~a~~~ 387 (482)
T PRK06529 308 NSVETAAMFDDIEDALGRPMTKDDMETMTWAIYQSGQDIPAKRYSQVLQKWDTYSATMASFHETYDLLLTFTTNTPAPKH 387 (482)
T ss_pred HHHHHHHHHHHHHHhcCCCCChhhcCHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHcCCCEEEcCCCCCCCCCC
Confidence 2222222232222111 12356666667778888899999999999999999999999999999999999999998
Q ss_pred Ccccccc----------------------hhh--hhchhhhcccccccCCceeeeecccC-CCCCceeEEeeccCCchhH
Q 007401 401 NTKKTYS----------------------AEF--HDRTLVLSSIGSMSGCCQVAIPIGKY-NEHPISISFITYHGGDKFL 455 (605)
Q Consensus 401 ~~~~~~~----------------------~~~--~~~~~~~t~~~nl~G~PaisvP~G~~-~glp~g~~~~~~~~~d~~l 455 (605)
++..... ..+ ...++.||.++|++|+|++|||+|.. +|||+|+|+++++++|..+
T Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~Nl~G~PaisvP~g~~~~GlPvGlQlvg~~~~D~~l 467 (482)
T PRK06529 388 GQLDPDSKLMANLAQAEIFSSEEQQNLVETMFEKSLAITPYTALANLTGQPAISLPTYETKEGLPMGVQLIAAKGREDLL 467 (482)
T ss_pred CccCcccchhhhccccccccchhhhhhhhhhhhhhhhcccccccccccCCCeEEeecCcCCCCCceeEEEecCCCcHHHH
Confidence 7521110 011 01334589999999999999999987 8999999999999999999
Q ss_pred HhHHHHHHh
Q 007401 456 LDTVLDLYD 464 (605)
Q Consensus 456 l~~a~~l~~ 464 (605)
|+++..+++
T Consensus 468 L~~a~~le~ 476 (482)
T PRK06529 468 LGIAEQFEA 476 (482)
T ss_pred HHHHHHHHh
Confidence 999999875
No 20
>PRK06061 amidase; Provisional
Probab=100.00 E-value=7.2e-85 Score=695.43 Aligned_cols=408 Identities=21% Similarity=0.245 Sum_probs=324.8
Q ss_pred hhHHHHHHHHHhhcCcccCCCCcCceeeecccCCCCCCCC------CCCCCCCCCceEEEeeccCCCCcccCCCchhhhh
Q 007401 27 GFVVLAETLRRRRNPKLNGRVDFGAFLERFELIPFPQPPP------PAARQPLAGLKFAIKDVFDVKGYVTGFGSPDWKR 100 (605)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~a~~~a~~------~~~~gpL~Gvp~~vKD~~~~~G~~tt~Gs~~~~~ 100 (605)
+.+|++|+++.+++||++.|+.+|||++..+++++++|+. ....+|||||||+|||+|+|+|++||+||+.+
T Consensus 30 g~~s~~el~~~~l~ri~~~~~~lna~~~~~~~~al~~A~~~d~~~~~g~~~pL~GvPv~vKD~~~v~G~~tt~Gs~~~-- 107 (483)
T PRK06061 30 GAVTSVELVRRSLRRIEASQPTLNAFRVVRAEAALAEAAEADRRRAAGDRLPLLGVPIAVKDDVDVAGVPTAFGTAGE-- 107 (483)
T ss_pred CCCCHHHHHHHHHHHHHHhCCcCCEEEEeChHHHHHHHHHHHHHHhcCCCCCcCCCeEEEEcccccCCceecCCCccc--
Confidence 4499999999999999999999999999988877665541 11235999999999999999999999999843
Q ss_pred cCCCCCCChHHHHHHHhCCCeEeeecccccccccCCCCCCCCCCCCCCCCCCCCCCCCchHHHHHHHhcCCceeeccCCC
Q 007401 101 DHHEAERTAVVVTLLLKNGATCIGKTVLDEFAFGITGENKHYGTPVNPQMPSHIPGGSSSGSAVAVAAQLVDFALGTDTI 180 (605)
Q Consensus 101 ~~~~~~~da~~V~rL~~aGai~~GKt~~~e~~~~~~~~n~~~G~~~NP~~~~~~~GGSSgGsaaaVAag~~~~a~GtD~g 180 (605)
..++.+||++|+||++|||||+||||||||+++.+|+|++||+|+||||++|+|||||||||||||+|++|+|||||||
T Consensus 108 -~~~a~~dA~vV~~Lr~AGAii~GKTn~~Efa~~~~~~n~~~G~t~NP~~~~~~~GGSSgGsAaAVAaG~~~~alGtDtg 186 (483)
T PRK06061 108 -VPPATADSEVVRRLRAAGAVIVGKTNTCELGQWPFTSGPAFGHTRNPWSRDHTPGGSSGGSAAAVAAGLVTAAIGSDGA 186 (483)
T ss_pred -CCCCCCCHHHHHHHHHCCCEEEEecCcchhccCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHcCCCceEeecCCC
Confidence 2355799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccchhhhhcccccccCCCCCccCCCCccCCCCCccccccccCHHHHHHHHHHHccCCCCCc---------------ccC
Q 007401 181 GCVRVPASFCGILGYRPSHGTVSMIGVLPNSQSLDTVGLLARNASILHRVGHVLLQLNAVEP---------------RRA 245 (605)
Q Consensus 181 GSiR~PAa~~Gv~GlkPt~G~v~~~G~~p~~~~~d~~G~~ar~~~d~~~v~~~~~~~~~~~~---------------~~~ 245 (605)
|||||||+||||||||||+||||+.|+.|.+.++|++|||+||++|++.+++++.+.+..+. ..+
T Consensus 187 GSIRiPAa~cGvvG~KPT~G~vs~~g~~~~~~~~d~~Gp~arsv~D~a~~~~~l~g~d~~d~~~~~~~~~~~~~~~~~~~ 266 (483)
T PRK06061 187 GSVRIPAAWTHLVGIKPQRGRISTWPLPEAFNGLTVNGPLARTVADAALLLDAASGNHPGDRHRPPPVTVSDAVGRAPGP 266 (483)
T ss_pred CcchhchhhcCceeecCCCCccCCCCCCcccccCceeCCEeCCHHHHHHHHHHHhCCCCCCCcccCCccchhhhccCCCC
Confidence 99999999999999999999999999999888999999999999999999999876432111 112
Q ss_pred ceeeeccchhh--hcCCchhhHHHHHHHHHHHHhCCCCCccccccccccccCcchhhhhhcCCCCCCchhHHHHHHHHHH
Q 007401 246 RRLIFADDIFQ--LSKVPKLKTIHVISKAIESLSGYQNPEHMNVGQYIASNVPSLKGLRAQSTSPENGTATLKALSSVML 323 (605)
Q Consensus 246 ~~l~~~~~~~~--~~~~~~~~~~~~~~~a~~~l~g~~~~~~~~l~~~v~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (605)
.++.+..+... .....++++.+.++++++.|+..+ +.|++..|.+.... ....+..
T Consensus 267 lrig~~~~~~~~~~~~~~~p~v~~a~~~a~~~L~~~G--------~~v~~~~~~~~~~~-----------~~~~~~~--- 324 (483)
T PRK06061 267 LRIALSTRFPFTGFPAKLHPEIRAAVRRVAEQLALLG--------HTVVPADPDYGLRL-----------GLNFLPR--- 324 (483)
T ss_pred cEEEEECCccccccccCCCHHHHHHHHHHHHHHHHCC--------CEEEEeCCchhhHH-----------HHHHHHH---
Confidence 34444432210 112246789999999999986332 22221112111000 0000000
Q ss_pred HhhhhhhHhhHHHHHHh--cCCCCChhHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEeCCCCCCccCC
Q 007401 324 SLQRYEFKTIYEEWVKS--AKPRLGYNVFERVLEAINTTQDNIKILYKVRNEMRAALQRLLKDDKILVIPTVSDPPLKLN 401 (605)
Q Consensus 324 ~l~~~e~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~s~~~~~~a~~~r~~~~~~~~~~~~~~Dvll~Pt~~~~ap~~~ 401 (605)
....+..+.+. ....+++.++.+++.+..++..+|.++++.|..+++.+.++|+++|+||+||+|.+||+++
T Consensus 325 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~r~~~~~~~~~~~~~~D~ll~Pt~p~~ap~~~ 398 (483)
T PRK06061 325 ------STAGLRDWAERLGDPVLLDPRTVSNARMGRLLSQAILRLARAAEAAAQRRVGSIFDIVDVVLAPTTAQPPPRVG 398 (483)
T ss_pred ------HHHHHHHHHhhccChhhCCHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHhcCCEEEcCCCCCCCCCcc
Confidence 00111122222 2345789999999989889999999999999999999999999999999999999999987
Q ss_pred cccccch----hhhhchhhhcccccccCCceeeeecccC-CCCCceeEEeeccCCchhHHhHHHHHHhH
Q 007401 402 TKKTYSA----EFHDRTLVLSSIGSMSGCCQVAIPIGKY-NEHPISISFITYHGGDKFLLDTVLDLYDS 465 (605)
Q Consensus 402 ~~~~~~~----~~~~~~~~~t~~~nl~G~PaisvP~G~~-~glp~g~~~~~~~~~d~~ll~~a~~l~~~ 465 (605)
+...... .....+..||.++|++|+|++|||+|.. +|+|+|+|+++++++|..+++++..+++.
T Consensus 399 ~~~~~~~~~~~~~~~~~~~~t~~~Nl~G~PaisvP~g~~~~GlPvGlQivg~~~~D~~LL~~A~~le~~ 467 (483)
T PRK06061 399 AFDRLGGWATDRAMIAACPYTWPWNVLGWPSINVPAGFTSDGLPIGAQLMGPANSEPLLISLAAQLEAV 467 (483)
T ss_pred cccccccchhhhhhhhcccccccccccCCCeEEEecCcCCCCCCeeeEEECCCCCHHHHHHHHHHHHhh
Confidence 5321100 0011233489999999999999999987 89999999999999999999999999874
No 21
>PRK07869 amidase; Provisional
Probab=100.00 E-value=1e-84 Score=694.00 Aligned_cols=421 Identities=18% Similarity=0.243 Sum_probs=320.4
Q ss_pred hhHHHHHHHhhhh-----HHHHHHHHHhhcCcccCCCCcCceeeecccCCCCCCCC-CCCCCCCCCceEEEeeccCCCCc
Q 007401 16 KVWVVIGVSVVGF-----VVLAETLRRRRNPKLNGRVDFGAFLERFELIPFPQPPP-PAARQPLAGLKFAIKDVFDVKGY 89 (605)
Q Consensus 16 ~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~a~~~a~~-~~~~gpL~Gvp~~vKD~~~~~G~ 89 (605)
++...|+.+|+.+ +|++|+++.+++||++.||.+|||++..+++++++|+. ....||||||||+|||||+++|+
T Consensus 11 ~~~~~~~~~l~~~~~~g~~s~~el~~~~l~ri~~~~~~lna~~~~~~e~a~~~A~~~d~~~gpL~GvPi~vKD~~~v~G~ 90 (468)
T PRK07869 11 ALGDLDAVGLAEAIRAGRVSAAEVVEAAIARAEAVNPALNALAYAAFDRARDRAARPGSQGGFFSGVPTFIKDNVDVAGL 90 (468)
T ss_pred hhhcCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCcCEEEEcCHHHHHHHHHhcCCCCCCcCCCeEEEecCcccCCc
Confidence 4444477777744 89999999999999999999999999988877666543 23569999999999999999999
Q ss_pred ccCCCchhhhhcCCCCCCChHHHHHHHhCCCeEeeecccccccccCCCCCCCCCCCCCCCCCCCCCCCCchHHHHHHHhc
Q 007401 90 VTGFGSPDWKRDHHEAERTAVVVTLLLKNGATCIGKTVLDEFAFGITGENKHYGTPVNPQMPSHIPGGSSSGSAVAVAAQ 169 (605)
Q Consensus 90 ~tt~Gs~~~~~~~~~~~~da~~V~rL~~aGai~~GKt~~~e~~~~~~~~n~~~G~~~NP~~~~~~~GGSSgGsaaaVAag 169 (605)
+||+||+.|.+ .++.+||++|+|||+||||++||||||||+++.+|+|++||+|+||||++|+|||||||||||||+|
T Consensus 91 ~tt~Gs~~~~~--~~~~~dA~vV~rLr~AGAii~GKTn~~Efa~~~~~~n~~~G~t~NP~d~~~~pGGSSgGsAaAVAaG 168 (468)
T PRK07869 91 PTMHGSDAWTP--RPAKADSDFARQFLATGLISLGKTQLPEFGFSASTEHPRLGPVRNPWNTDYSAGASSGGSAALVAAG 168 (468)
T ss_pred ccCcccHhhcC--CCCCCcHHHHHHHHHCCCEEEEecCchHhhcCCCCCCCCCCCcCCCCCCCCCCCCCchHHHHHHHcC
Confidence 99999999975 6778999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceeeccCCCCccchhhhhcccccccCCCCCccCCCCccC-CCCCccccccccCHHHHHHHHHHHccCCCCC---c---
Q 007401 170 LVDFALGTDTIGCVRVPASFCGILGYRPSHGTVSMIGVLPN-SQSLDTVGLLARNASILHRVGHVLLQLNAVE---P--- 242 (605)
Q Consensus 170 ~~~~a~GtD~gGSiR~PAa~~Gv~GlkPt~G~v~~~G~~p~-~~~~d~~G~~ar~~~d~~~v~~~~~~~~~~~---~--- 242 (605)
++|+|+|||||||||||||||||||||||+||||+.|+.|. ..++|++|||+||++|++.+++++.+.+..+ .
T Consensus 169 ~~~~alGTDtgGSiRiPAa~cGvvG~KPT~G~vs~~g~~~~~~~~~d~~Gp~arsv~D~a~l~~v~~g~~~~~~~~~~~~ 248 (468)
T PRK07869 169 VVPIAHANDGGGSIRIPAACCGLVGLKPSRGRLPLDPELRRLPVNIVANGVLTRTVRDTAAFYREAERYYRNPKLPPIGD 248 (468)
T ss_pred CCceeeecCCCCccccchhhcCeeeecCCCCcccCCCCcccCccccceecCeeCcHHHHHHHHHHHhccCccCCCCchhh
Confidence 99999999999999999999999999999999999998764 3478999999999999999999987543111 0
Q ss_pred -----ccCceeeeccchhhhcCCchhhHHHHHHHHHHHHhCCCCCccccccccccc-cCcchhhhhhcCCCCCCchhHHH
Q 007401 243 -----RRARRLIFADDIFQLSKVPKLKTIHVISKAIESLSGYQNPEHMNVGQYIAS-NVPSLKGLRAQSTSPENGTATLK 316 (605)
Q Consensus 243 -----~~~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~~l~g~~~~~~~~l~~~v~~-~~p~~~~~~~~~~~~~~~~~~~~ 316 (605)
..+.++.+..+.+. ....++++.++++++++.|+..+ +.|++ ..|...++.. .+.
T Consensus 249 ~~~~~~~~lrigv~~~~~~-~~~~~p~v~~a~~~a~~~L~~~G--------~~v~~~~~~~~~~~~~----------~~~ 309 (468)
T PRK07869 249 VTGPGKQRLRIAVVTDSVT-GREADPEVREAVLATARLLEELG--------HRVEPVDLPVPASFVD----------DFL 309 (468)
T ss_pred hcccCCCCCEEEEECCccC-CCCCCHHHHHHHHHHHHHHHHCC--------CEEEEeCCCchHHHHH----------HHH
Confidence 12235555543321 02346789999999999986333 22221 2222111100 000
Q ss_pred HHHHHHHHhhhhhhHhhHHHHHHhcCCCCChhH-----HHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEe
Q 007401 317 ALSSVMLSLQRYEFKTIYEEWVKSAKPRLGYNV-----FERVLEAINTTQDNIKILYKVRNEMRAALQRLLKDDKILVIP 391 (605)
Q Consensus 317 ~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~s~~~~~~a~~~r~~~~~~~~~~~~~~Dvll~P 391 (605)
. +..+...+....... .....+.+.. ......+.. +..+|.++.+.|+.+++.+.++|+++|+||+|
T Consensus 310 ~----~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~Dvll~P 381 (468)
T PRK07869 310 L----YWGFLAFALVRGGRR---TFGPSFDRTRLDNLTLGLARHARR-NLHRLPLAIARLRRLRRVYARFFGTYDVVLTP 381 (468)
T ss_pred H----HHHHHHHHHHhhhhh---hcccccCHHHhhHHHHHHHHHHhh-hHHHHHHHHHHHHHHHHHHHHHHhcCCEEecC
Confidence 0 000000000000000 0111122222 222222222 44567788888999999999999999999999
Q ss_pred CCCCCCccCCcccccc--hhh---hhchhhhcccccccCCceeeeecccC-CCCCceeEEeeccCCchhHHhHHHHHHhH
Q 007401 392 TVSDPPLKLNTKKTYS--AEF---HDRTLVLSSIGSMSGCCQVAIPIGKY-NEHPISISFITYHGGDKFLLDTVLDLYDS 465 (605)
Q Consensus 392 t~~~~ap~~~~~~~~~--~~~---~~~~~~~t~~~nl~G~PaisvP~G~~-~glp~g~~~~~~~~~d~~ll~~a~~l~~~ 465 (605)
|+|.+||+++...... ... ...+..||.++|++|+|++|||+|.. +|+|+|+|+++++++|..+++++..+++.
T Consensus 382 t~~~~ap~~~~~~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~~~~GlPvGlQivg~~~~D~~lL~~A~~le~~ 461 (468)
T PRK07869 382 TLAHTTPEIGYLDPTQDFDTVLDRLISYVAFTPLQNATGEPAISLPLGQSSDGLPVGMMFSADVGDEATLLELAYELEEA 461 (468)
T ss_pred CCCCCCCCCCccCccccchhhhHHHhcccccCccccccCCCceeeecCcCCCCCCeeEEEecCCCchHHHHHHHHHHHhc
Confidence 9999999987532110 111 11334579999999999999999987 89999999999999999999999998764
No 22
>PRK08186 allophanate hydrolase; Provisional
Probab=100.00 E-value=4.7e-84 Score=698.76 Aligned_cols=410 Identities=26% Similarity=0.328 Sum_probs=329.2
Q ss_pred hhHHHHHHHHHhhcCcccCCCCcCceeeecc-cCCCCCCCC----CCCCCCCCCceEEEeeccCCCCcccCCCchhhhhc
Q 007401 27 GFVVLAETLRRRRNPKLNGRVDFGAFLERFE-LIPFPQPPP----PAARQPLAGLKFAIKDVFDVKGYVTGFGSPDWKRD 101 (605)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~-~~a~~~a~~----~~~~gpL~Gvp~~vKD~~~~~G~~tt~Gs~~~~~~ 101 (605)
+.+|++|+++.+++||++ ++.+|+|++... ++++++|+. ....||||||||+|||||+|+|++||+||+.|.
T Consensus 19 g~~t~~evv~a~l~ri~~-~~~~~a~i~~~~~~~a~~~A~~ld~~~~~~gPL~GVP~aVKDnidvaG~pTTaGs~~~~-- 95 (600)
T PRK08186 19 GTLTPRAVVAALYARIAA-VDDPEVWIHLRPEADLLAQAAALEARDPAALPLYGVPFAVKDNIDVAGLPTTAACPAFA-- 95 (600)
T ss_pred CCCCHHHHHHHHHHHHHh-cCCCCEEEEeCchHHHHHHHHHHhhhccccCCCCCCeEEeecceecCCcccCcCCHhHc--
Confidence 448999999999999998 679999999875 344444331 124689999999999999999999999999985
Q ss_pred CCCCCCChHHHHHHHhCCCeEeeecccccccccCCCCCCCCCCCCCCCCCCCCCCCCchHHHHHHHhcCCceeeccCCCC
Q 007401 102 HHEAERTAVVVTLLLKNGATCIGKTVLDEFAFGITGENKHYGTPVNPQMPSHIPGGSSSGSAVAVAAQLVDFALGTDTIG 181 (605)
Q Consensus 102 ~~~~~~da~~V~rL~~aGai~~GKt~~~e~~~~~~~~n~~~G~~~NP~~~~~~~GGSSgGsaaaVAag~~~~a~GtD~gG 181 (605)
+.+.+||++|+||++||||++||||||||+++.+|.|+.||+|+||||++|+|||||||||||||+|+++++|||||||
T Consensus 96 -~~p~~DA~vV~rLr~AGAIilGKTN~~Efa~g~~g~n~~yG~t~NP~~~~~~~GGSSsGSAaAVAaG~~~~alGTDtgG 174 (600)
T PRK08186 96 -YTPERDATVVARLRAAGAIVIGKTNLDQFATGLVGTRSPYGAVRNAFDPEYVSGGSSSGSAVAVALGLVSFALGTDTAG 174 (600)
T ss_pred -CCCCcChHHHHHHHHCCCEEEeeecchhhhcCCCCCCCCCCCCCCCCCCCCCCCCCcHHHHHHHHcCCcceEeeecCCC
Confidence 3578999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhhhhcccccccCCCCCccCCCCccCCCCCccccccccCHHHHHHHHHHHccCCCCCc-------------ccCcee
Q 007401 182 CVRVPASFCGILGYRPSHGTVSMIGVLPNSQSLDTVGLLARNASILHRVGHVLLQLNAVEP-------------RRARRL 248 (605)
Q Consensus 182 SiR~PAa~~Gv~GlkPt~G~v~~~G~~p~~~~~d~~G~~ar~~~d~~~v~~~~~~~~~~~~-------------~~~~~l 248 (605)
|||+||+||||||||||+||||+.|++|.++++|++|||+||++|+..+++++.+.+..+. ..+.++
T Consensus 175 SiRiPAa~cGlvGlKPT~G~vs~~Gv~p~~~slD~vGp~Arsv~D~~~~l~vl~g~d~~D~~s~~~p~~~~~~~~~~lrI 254 (600)
T PRK08186 175 SGRVPAAFNNIVGLKPTLGLLSTRGVVPACRTLDCVSVFALTVDDADAVLAVMAGFDPADPYSRANPADAPAALPAGPRV 254 (600)
T ss_pred cchhhhHHhCceEEeCCCCcccCCCcccccccCCceecccCCHHHHHHHHHHhcCCCCCCcccccCCcccccccCCCCEE
Confidence 9999999999999999999999999999999999999999999999999999876532221 012345
Q ss_pred eeccch-hhhcCCchhhHHHHHHHHHHHHhCCCCCccccccccccccCcchhhhhhcCCCCCCchhHHHHHHHHHHHhhh
Q 007401 249 IFADDI-FQLSKVPKLKTIHVISKAIESLSGYQNPEHMNVGQYIASNVPSLKGLRAQSTSPENGTATLKALSSVMLSLQR 327 (605)
Q Consensus 249 ~~~~~~-~~~~~~~~~~~~~~~~~a~~~l~g~~~~~~~~l~~~v~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 327 (605)
.++.+. .... .++++.++++++++.|...+. +.++...|.+.+. ....+.....
T Consensus 255 gv~~~~~~~~~--~~~~v~~a~~~a~~~L~~~G~-------~v~ei~~~~~~~~----------------~~~~~~~~~~ 309 (600)
T PRK08186 255 GVPRAAQLEFF--GDAEAEAAFAAALARLEALGA-------ELVEIDFSPFLEA----------------ARLLYEGPWV 309 (600)
T ss_pred EEEcchhcccc--CCHHHHHHHHHHHHHHHHcCC-------eEEEecchhHHHH----------------HHHHHHHHHH
Confidence 554321 1111 256788999999998863332 1112222322110 0001111122
Q ss_pred hhhHhhHHHHHHhcCCCCChhHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEeCCCCCCccCCcccccc
Q 007401 328 YEFKTIYEEWVKSAKPRLGYNVFERVLEAINTTQDNIKILYKVRNEMRAALQRLLKDDKILVIPTVSDPPLKLNTKKTYS 407 (605)
Q Consensus 328 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~a~~~r~~~~~~~~~~~~~~Dvll~Pt~~~~ap~~~~~~~~~ 407 (605)
.|....+..+++.....++|.++.++..+..++..+|.+++..|+.+++.++++|+++|+||+||+|.+++ +.+.....
T Consensus 310 ae~~~~~~~~~~~~~~~~~p~~~~~i~~g~~~sa~~~~~a~~~r~~l~~~~~~~~~~~D~Ll~Pt~p~~~~-~~~~~~~~ 388 (600)
T PRK08186 310 AERYAAVGEFLEAHPDAVDPVVRGIIAGAAAFSAADAFRALYRLAELRRAAEAVLAGIDALLVPTAPTHPT-IAEVAADP 388 (600)
T ss_pred HHHHHHHHHHHhhChhhcCHHHHHHHHhCcCCCHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCCC-chhhcCCc
Confidence 23444556666666667899999999999899999999999999999999999999999999999999875 33221111
Q ss_pred hhhhhchhhhcccccccCCceeeeecccC-CCCCceeEEeeccCCchhHHhHHHHHHhHH
Q 007401 408 AEFHDRTLVLSSIGSMSGCCQVAIPIGKY-NEHPISISFITYHGGDKFLLDTVLDLYDSL 466 (605)
Q Consensus 408 ~~~~~~~~~~t~~~nl~G~PaisvP~G~~-~glp~g~~~~~~~~~d~~ll~~a~~l~~~~ 466 (605)
......+..||.++|++|+|+++||+|+. +|+|+|+|+++++++|..+++++..+++..
T Consensus 389 ~~~~~~~~~yT~~~Nl~glPAisvP~g~~~~GlPvGvqlig~~~~D~~LL~~A~~le~~~ 448 (600)
T PRK08186 389 IGLNSRLGTYTNFVNLLDLCALAVPAGFRADGLPFGVTLIAPAFADQALADLAARLQAAL 448 (600)
T ss_pred hhhhhhhhhccccccccCCCeEEEecccCCCCCCeeEEEEcCCCCHHHHHHHHHHHHhhc
Confidence 11222333589999999999999999986 899999999999999999999999998753
No 23
>PRK08137 amidase; Provisional
Probab=100.00 E-value=1.3e-83 Score=689.73 Aligned_cols=407 Identities=23% Similarity=0.259 Sum_probs=320.3
Q ss_pred HHHHhhhh-----HHHHHHHHHhhcCcccC---CCCcCceeeecccCCCCCCC-------CCCCCCCCCCceEEEeeccC
Q 007401 21 IGVSVVGF-----VVLAETLRRRRNPKLNG---RVDFGAFLERFELIPFPQPP-------PPAARQPLAGLKFAIKDVFD 85 (605)
Q Consensus 21 ~~~~~~~~-----~~~~~~~~~~~~~~~~~---~~~~~a~~~~~~~~a~~~a~-------~~~~~gpL~Gvp~~vKD~~~ 85 (605)
|+.+|+.+ +|++|+++.+++||++. ||.+|||++..++ ++++|+ .+..+||||||||+|||+|+
T Consensus 7 ~~~~l~~~l~~g~~t~~ev~~~~l~ri~~~~~~~~~lna~~~~~~~-al~~A~~~d~~~~~g~~~gpL~GvPi~vKD~~~ 85 (497)
T PRK08137 7 RAGALQAAMPAGAAPASQLTRAYLQRIARIDRDGPRLNAVIELNPD-AEADAAALDAERKAGKVRGPLHGIPVLLKDNID 85 (497)
T ss_pred CHHHHHHHHHcCCCCHHHHHHHHHHHHHHhcCCCCceeEEEEeCHH-HHHHHHHHHHHHhcCCCCCCcCCceeeeeccee
Confidence 56666644 99999999999999976 7899999998764 544443 34567999999999999999
Q ss_pred CC-CcccCCCchhhhhcCCCCCCChHHHHHHHhCCCeEeeeccccccccc-----CCCCCCCCCCCCCCCCCCCCCCCCc
Q 007401 86 VK-GYVTGFGSPDWKRDHHEAERTAVVVTLLLKNGATCIGKTVLDEFAFG-----ITGENKHYGTPVNPQMPSHIPGGSS 159 (605)
Q Consensus 86 ~~-G~~tt~Gs~~~~~~~~~~~~da~~V~rL~~aGai~~GKt~~~e~~~~-----~~~~n~~~G~~~NP~~~~~~~GGSS 159 (605)
|+ |++||+||..+.+ .++.+||++|+|||+|||||+||||||||+++ .+|+|++||+|+||||++|+|||||
T Consensus 86 v~~G~~tt~Gs~~~~~--~~~~~DA~vV~rLr~AGAii~GKTn~~Efa~~~~~~~~~g~n~~~G~t~NP~~~~~~~GGSS 163 (497)
T PRK08137 86 AADPMPTTAGSLALAG--NRPTRDAFLVARLRDAGAVILGKANLSEWANFRSTRSSSGWSARGGLTRNPYALDRSPCGSS 163 (497)
T ss_pred ecCCCCcCcCcHhhcC--CCCCcCcHHHHHHHHCCCEEEeecChHHhhccCCCCCCCCCCCCCCCCCCCCCCCCCCCcCc
Confidence 99 9999999999875 67889999999999999999999999999954 4468999999999999999999999
Q ss_pred hHHHHHHHhcCCceeeccCCCCccchhhhhcccccccCCCCCccCCCCccCCCCCccccccccCHHHHHHHHHHHccCCC
Q 007401 160 SGSAVAVAAQLVDFALGTDTIGCVRVPASFCGILGYRPSHGTVSMIGVLPNSQSLDTVGLLARNASILHRVGHVLLQLNA 239 (605)
Q Consensus 160 gGsaaaVAag~~~~a~GtD~gGSiR~PAa~~Gv~GlkPt~G~v~~~G~~p~~~~~d~~G~~ar~~~d~~~v~~~~~~~~~ 239 (605)
||||||||+|++|+|||||||||||+||+||||||||||+||||+.|++|+++++|++|||+||++|++.+++++.+.+.
T Consensus 164 gGsAaAVAaG~~~~aiGtDtgGSiRiPAa~cGv~GlKPT~Grvs~~G~~~~~~s~d~~Gp~arsv~D~a~~l~vl~g~d~ 243 (497)
T PRK08137 164 SGSGAAVAAGLAAVAIGTETDGSITCPAAINGLVGLKPTVGLVSRDGIVPISHSQDTAGPMTRTVADAAAVLTAIAGGDP 243 (497)
T ss_pred cHHHHHHHcCCCceeeecCCCCccccchhhcCeeeecCCCCceeCCCCCCcccccCcccCeeCCHHHHHHHHHHHhCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999876432
Q ss_pred CCc--------------------ccCceeeeccchhhhcCCchhhHHHHHHHHHHHHhCCCCCcccccccccc-ccCcch
Q 007401 240 VEP--------------------RRARRLIFADDIFQLSKVPKLKTIHVISKAIESLSGYQNPEHMNVGQYIA-SNVPSL 298 (605)
Q Consensus 240 ~~~--------------------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~~l~g~~~~~~~~l~~~v~-~~~p~~ 298 (605)
.++ .++.+|.+..+.+ ..++++.++++++++.|+..+ +.++ ...|.+
T Consensus 244 ~d~~~~~~~~~~~~~~~~~~~~~~~~lrIgv~~~~~----~~~~~v~~a~~~a~~~L~~~G--------~~v~~~~~~~~ 311 (497)
T PRK08137 244 ADPATASAPAPAVDYVAALDADALRGARLGVARNYL----GYHPEVDAQFERALAELKAAG--------AVVIDVVDLDD 311 (497)
T ss_pred CCcccccCCCCccchhhhccccccCCCEEEEEchhc----cCCHHHHHHHHHHHHHHHHCC--------CEEEeccCCch
Confidence 110 1223455544432 145788999999999886332 2221 122322
Q ss_pred hhhhhcCCCCCCchhHHHHHHHHHHHhhhhhhHhhHHHHH----------------H-------hcCCCCChhHHHHHHH
Q 007401 299 KGLRAQSTSPENGTATLKALSSVMLSLQRYEFKTIYEEWV----------------K-------SAKPRLGYNVFERVLE 355 (605)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~e~~~~~~~~~----------------~-------~~~~~~~~~~~~~~~~ 355 (605)
..+.. .+..+...|+...+..++ . .....+++.++.+++.
T Consensus 312 ~~~~~-----------------~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (497)
T PRK08137 312 GDWGE-----------------AEKVVLLHEFKAGLNAYLRSTAPHAPVRTLADLIAFNRAQHAREMPYFGQELFEQAQA 374 (497)
T ss_pred hhHHH-----------------HHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHhhccchhhhcccCHHHHHHHHc
Confidence 11110 001111111111111111 1 1124577888888888
Q ss_pred HhcCCHHHHHHHHHHHHHH--HHHHHHHhC--CCcEEEEeCCCCCCccCCcccccchhhhhchhhhcccccccCCceeee
Q 007401 356 AINTTQDNIKILYKVRNEM--RAALQRLLK--DDKILVIPTVSDPPLKLNTKKTYSAEFHDRTLVLSSIGSMSGCCQVAI 431 (605)
Q Consensus 356 ~~~~s~~~~~~a~~~r~~~--~~~~~~~~~--~~Dvll~Pt~~~~ap~~~~~~~~~~~~~~~~~~~t~~~nl~G~Paisv 431 (605)
+..++..+|.++++.+.++ ++.+.++|+ ++|+||+||++ +||+++.... ..+. ..+|.++|++|+|++||
T Consensus 375 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~D~ll~Pt~~-~ap~~~~~~~--~~~~---~~~t~~~nl~G~Paisv 448 (497)
T PRK08137 375 APGLDDPAYLDALADAKRLAGPEGIDAALKEHRLDALVAPTTG-PAWLIDLING--DSFG---GSSSTPAAVAGYPHLTV 448 (497)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEEeCCCC-CCcccccccc--cccc---cccccccHhhCCCeEEE
Confidence 8888999999988755554 478999997 68999999999 8888864211 1111 13678999999999999
Q ss_pred ecccCCCCCceeEEeeccCCchhHHhHHHHHHhH
Q 007401 432 PIGKYNEHPISISFITYHGGDKFLLDTVLDLYDS 465 (605)
Q Consensus 432 P~G~~~glp~g~~~~~~~~~d~~ll~~a~~l~~~ 465 (605)
|+|..+|||+|+|+++++++|..||+++..+++.
T Consensus 449 P~g~~~GlPvGvQlig~~~~d~~LL~~a~~lE~~ 482 (497)
T PRK08137 449 PMGQVQGLPVGLSFIGAAWSEARLLELGYAYEQA 482 (497)
T ss_pred eCCCCCCcCeEEEEECCCCCHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999874
No 24
>PRK07139 amidase; Provisional
Probab=100.00 E-value=2.2e-80 Score=652.35 Aligned_cols=397 Identities=25% Similarity=0.338 Sum_probs=302.4
Q ss_pred HHhhcCcccCCCCcCceeeecccCCCCCCCCCCCCCCCCCceEEEeeccCCCCcccCCCchhhhhcCCCCCCChHHHHHH
Q 007401 36 RRRRNPKLNGRVDFGAFLERFELIPFPQPPPPAARQPLAGLKFAIKDVFDVKGYVTGFGSPDWKRDHHEAERTAVVVTLL 115 (605)
Q Consensus 36 ~~~~~~~~~~~~~~~a~~~~~~~~a~~~a~~~~~~gpL~Gvp~~vKD~~~~~G~~tt~Gs~~~~~~~~~~~~da~~V~rL 115 (605)
+.+++++. +..+|++.+.+.+.. ...||||||||+|||+|+++|++||+||+.+.+ .++.+||++|+||
T Consensus 9 ~~~~~~~~--~~~~~~~~~~~~~~~-------~~~gpL~GvPvavKD~~~v~G~~tt~Gs~~l~~--~~~~~dA~vV~rL 77 (439)
T PRK07139 9 QKALEELK--NDKNNAVSYVFDEKN-------NKDGPLANCVFTIKDNFATSEGPTHASSKSLEN--FKPSYNATVVQKL 77 (439)
T ss_pred HHHHHHhh--ccccCeEEEEecccC-------CCCCCcCCcEEEEEcceecCCCccCcChHHHcc--CCCCCchHHHHHH
Confidence 33444333 467888888755442 247999999999999999999999999999875 5678999999999
Q ss_pred HhCCCeEeeecccccccccCCCCCCCCCCCCCCCCCCCCCCCCchHHHHHHHhcCCceeeccCCCCccchhhhhcccccc
Q 007401 116 LKNGATCIGKTVLDEFAFGITGENKHYGTPVNPQMPSHIPGGSSSGSAVAVAAQLVDFALGTDTIGCVRVPASFCGILGY 195 (605)
Q Consensus 116 ~~aGai~~GKt~~~e~~~~~~~~n~~~G~~~NP~~~~~~~GGSSgGsaaaVAag~~~~a~GtD~gGSiR~PAa~~Gv~Gl 195 (605)
++|||||+||||||||+++.+|+|++||+|+||||++|+|||||||||||||+| +|+|+|||||||||+||||||||||
T Consensus 78 r~AGAIilGKTn~~Efa~~~~~~n~~~G~t~NP~~~~~~pGGSSgGSAAaVAag-~~~alGtDtgGSIRiPAa~cGvvGl 156 (439)
T PRK07139 78 INAGAKPVAKVHCDELGLGGTGLFSAFGLIKNPLDSSKLVGGSSSGSAATFNKN-ISFAIGSDTGDSVRLPASFIGKVGF 156 (439)
T ss_pred HHCCCEEEEeechhhHhcCCCCCCCCCCCcCCCCCCCCCCCCCchHHHHHHHCC-CCEEEEcCCCcchhhhHHHcCeEEE
Confidence 999999999999999999999999999999999999999999999999999997 7999999999999999999999999
Q ss_pred cCCCCCccCCCCccCCCCCccccccccCHHHHHHHHHHHccCCCCCc------------ccCceeeeccchhhhcCCchh
Q 007401 196 RPSHGTVSMIGVLPNSQSLDTVGLLARNASILHRVGHVLLQLNAVEP------------RRARRLIFADDIFQLSKVPKL 263 (605)
Q Consensus 196 kPt~G~v~~~G~~p~~~~~d~~G~~ar~~~d~~~v~~~~~~~~~~~~------------~~~~~l~~~~~~~~~~~~~~~ 263 (605)
|||+||||+.|++|+++++|++|||+|+++|++.+++++.+.+..++ ..+.++.+... + ...++
T Consensus 157 KPT~G~vs~~G~~p~~~sld~~Gp~arsv~D~a~~~~vl~g~d~~d~~~~~~~~~~~~~~~~lrig~~~~-~---~~~~~ 232 (439)
T PRK07139 157 KPSYGAISRYGLFAYASSLDTVAYFTHNVNDAIILSKVLFGKDENDLTSVDVKINNVKKTKPKKVAYLDC-F---KELEE 232 (439)
T ss_pred eCCCCCcCCCCcccCcccCCccccccCCHHHHHHHHHHHcCCCcCCccccccCcccccccCCCEEEEECc-c---ccCCH
Confidence 99999999999999999999999999999999999999987543221 12345554322 1 12357
Q ss_pred hHHHHHHHHHHHHhCCCCCccccccccccc-cCcc--hhhhhhcCCCCCCchhHHHHHHHHHHHhhhh---hh-----Hh
Q 007401 264 KTIHVISKAIESLSGYQNPEHMNVGQYIAS-NVPS--LKGLRAQSTSPENGTATLKALSSVMLSLQRY---EF-----KT 332 (605)
Q Consensus 264 ~~~~~~~~a~~~l~g~~~~~~~~l~~~v~~-~~p~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---e~-----~~ 332 (605)
++.++++++++.|+..+. .+++ ..|. +......+ ......+....+..+ .+ ..
T Consensus 233 ~v~~a~~~a~~~L~~~G~--------~v~~~~~~~~~~~~~~~~~--------~~~~~~e~~~~~~~~~~~~~~~~~~~~ 296 (439)
T PRK07139 233 YVAKKYKKLINILKSENI--------EVEKIKIDEKLLKAIKPVY--------KIISYSEASSNLANLNGIAFGNREKGS 296 (439)
T ss_pred HHHHHHHHHHHHHHHCCC--------EEEEeCCChhHHHHHHHHH--------HHHHHHHHHHHHHhhcccccccccccc
Confidence 788999999988864332 2211 1221 11000000 000000111101000 00 00
Q ss_pred hHHHHHH-hcCCCCChhHHHHHHHHhcCCH-----HHHHHHHHHHHHHHHHHHHHhCCCcEEEEeCCCCCCccCCccccc
Q 007401 333 IYEEWVK-SAKPRLGYNVFERVLEAINTTQ-----DNIKILYKVRNEMRAALQRLLKDDKILVIPTVSDPPLKLNTKKTY 406 (605)
Q Consensus 333 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~s~-----~~~~~a~~~r~~~~~~~~~~~~~~Dvll~Pt~~~~ap~~~~~~~~ 406 (605)
.+..++. .....+++.++.++..+..++. .+|.++++.|+++++.+.++|+++|+||+||+|.+||+++.....
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~a~~~r~~~~~~~~~~f~~~D~ll~Pt~~~~ap~~~~~~~~ 376 (439)
T PRK07139 297 SWEEIMINTRSEGFGKMVQKRLILGSYFLEEENQEKYFLKAKKVRRVIKNYYESIHNKFDIVIYPAYADIAPDIDENENK 376 (439)
T ss_pred cHHHHHHhcchhccCHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHhcCCEEEeCCCCCCCCcccccccc
Confidence 1222322 2334588889988888776554 358899999999999999999999999999999999998753111
Q ss_pred chhhhhchhhhcccccccCCceeeeecccCCCCCceeEEeeccCCchhHHhHHHHHHhHHH
Q 007401 407 SAEFHDRTLVLSSIGSMSGCCQVAIPIGKYNEHPISISFITYHGGDKFLLDTVLDLYDSLQ 467 (605)
Q Consensus 407 ~~~~~~~~~~~t~~~nl~G~PaisvP~G~~~glp~g~~~~~~~~~d~~ll~~a~~l~~~~~ 467 (605)
...+. .+ +|.++|++|+|++|||+|..+|||+|+|+++++++|..||+++..+++.++
T Consensus 377 ~~~~~-~~--~t~~~nl~G~PaisvP~g~~~glPiGlqivg~~~~D~~LL~~A~~lE~~~~ 434 (439)
T PRK07139 377 SDNYM-DY--ILTISNLVGNPSLSIPLGKYNNLPFNLAIDSKIYDDEKLLSYSLYIEELIK 434 (439)
T ss_pred hhhhh-hh--cccCcccCCCCeEEEeCCCCCCCCeEEEEECCCCChHHHHHHHHHHHHHhc
Confidence 11121 11 377899999999999999658999999999999999999999999987654
No 25
>TIGR02713 allophanate_hyd allophanate hydrolase. Allophanate hydrolase catalyzes the second reaction in an ATP-dependent two-step degradation of urea to ammonia and C02, following the action of the biotin-containing urea carboxylase. The yeast enzyme, a fusion of allophanate hydrolase to urea carboxylase, is designated urea amidolyase.
Probab=100.00 E-value=1.4e-80 Score=664.42 Aligned_cols=387 Identities=28% Similarity=0.345 Sum_probs=306.6
Q ss_pred Cceeeecc-cCCCCCCC------CCCCCCCCCCceEEEeeccCCCCcccCCCchhhhhcCCCCCCChHHHHHHHhCCCeE
Q 007401 50 GAFLERFE-LIPFPQPP------PPAARQPLAGLKFAIKDVFDVKGYVTGFGSPDWKRDHHEAERTAVVVTLLLKNGATC 122 (605)
Q Consensus 50 ~a~~~~~~-~~a~~~a~------~~~~~gpL~Gvp~~vKD~~~~~G~~tt~Gs~~~~~~~~~~~~da~~V~rL~~aGai~ 122 (605)
|+|++... ++++++|+ .....+|||||||+|||||+|+|++||+||+.|. +++.+||++|+|||+||||+
T Consensus 2 ~a~i~~~~~e~al~~A~~ld~~~~~~~~~PL~GvP~aVKD~idvaG~pTTaGs~~~~---~~p~~DA~vV~rLr~AGAIi 78 (561)
T TIGR02713 2 EAWISLLSEEDLLAQAAALDARDARPERLPLYGVPFAVKDNIDVAGLPTTAACPAFA---YTPEEDATVVALLRAAGAIV 78 (561)
T ss_pred cEEEEeCCHHHHHHHHHHHHHHHhcCCCCCccCCeEEEEcccccCCCccCcCCHhHc---CCCCcCHHHHHHHHHCCCEE
Confidence 57777643 34444332 1123589999999999999999999999999985 46789999999999999999
Q ss_pred eeecccccccccCCCCCCCCCCCCCCCCCCCCCCCCchHHHHHHHhcCCceeeccCCCCccchhhhhcccccccCCCCCc
Q 007401 123 IGKTVLDEFAFGITGENKHYGTPVNPQMPSHIPGGSSSGSAVAVAAQLVDFALGTDTIGCVRVPASFCGILGYRPSHGTV 202 (605)
Q Consensus 123 ~GKt~~~e~~~~~~~~n~~~G~~~NP~~~~~~~GGSSgGsaaaVAag~~~~a~GtD~gGSiR~PAa~~Gv~GlkPt~G~v 202 (605)
+||||||||+++.+|.|++||+|+||||++|+|||||||||||||+|++++++|||||||||||||||||||||||+|||
T Consensus 79 iGKTN~~Efa~g~~g~n~~~G~t~NP~d~~~~~GGSSsGSAaAVAaG~v~~alGTDtgGSiRiPAa~cGlvGlKPT~G~v 158 (561)
T TIGR02713 79 VGKTNLDQFATGLVGTRSPYGAVRNAFDPAYISGGSSSGSAVAVARGLVPFALGTDTAGSGRVPAALNNIVGLKPTKGLV 158 (561)
T ss_pred EEEeCchHhhcCCCCCCCCCCCCCCCCCCCCCCCCCcHHHHHHHHcCCCceEEeecCCCcchhhhHHhCceeEecCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCccCCCCCccccccccCHHHHHHHHHHHccCCCCCc-----------c--cCceeeeccchhhhcCCchhhHHHHH
Q 007401 203 SMIGVLPNSQSLDTVGLLARNASILHRVGHVLLQLNAVEP-----------R--RARRLIFADDIFQLSKVPKLKTIHVI 269 (605)
Q Consensus 203 ~~~G~~p~~~~~d~~G~~ar~~~d~~~v~~~~~~~~~~~~-----------~--~~~~l~~~~~~~~~~~~~~~~~~~~~ 269 (605)
|+.|++|.++++||+|||+||++|++.+++++.+.+..++ . .+.++.++.+... ....++++.+++
T Consensus 159 s~~Gv~p~~~slD~vG~~Arsv~D~~~~l~v~~g~d~~d~~s~~~p~~~~~~~~~~lrigv~~~~~~-~~~~~~~v~~a~ 237 (561)
T TIGR02713 159 STTGVVPACRSLDCVSIFALTVADAEQVLRIAAAPDARDPYSRPLPAAALRRLPPPPRVGVPRAAQL-EFFGDSQAEAAF 237 (561)
T ss_pred cCCCccccccCCCeeechhCCHHHHHHHHHhhcCCCCcCccccCCCchhhcccCCCCEEEEECchhc-CCCCCHHHHHHH
Confidence 9999999999999999999999999999999876432221 0 1234555431110 011245788999
Q ss_pred HHHHHHHhCCCCCccccccccc-cccCcchhhhhhcCCCCCCchhHHHHHHHHHHHhhhhhhHhhHHHHHHhcCCCCChh
Q 007401 270 SKAIESLSGYQNPEHMNVGQYI-ASNVPSLKGLRAQSTSPENGTATLKALSSVMLSLQRYEFKTIYEEWVKSAKPRLGYN 348 (605)
Q Consensus 270 ~~a~~~l~g~~~~~~~~l~~~v-~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~ 348 (605)
+++++.|+..+ +.+ +...|.+.+. ...+ +......+....+..+++.....++|.
T Consensus 238 ~~a~~~L~~~G--------~~v~~v~~~~~~~~-------------~~~l---~~~~~~~e~~~~~~~~~~~~~~~~~p~ 293 (561)
T TIGR02713 238 AAAVERLEALG--------VEVVEIDFAPFLET-------------AALL---YEGPWVAERYAAVGEFVEAQPDALDPV 293 (561)
T ss_pred HHHHHHHHHCC--------CEEEEecchhHHHH-------------HHHH---HHHHHHHHHHHHHHHHHhhChhhcCHH
Confidence 99999986333 222 1222322110 0000 111111233344555666666778999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEeCCCCCCccCCcccccchhhhhchhhhcccccccCCce
Q 007401 349 VFERVLEAINTTQDNIKILYKVRNEMRAALQRLLKDDKILVIPTVSDPPLKLNTKKTYSAEFHDRTLVLSSIGSMSGCCQ 428 (605)
Q Consensus 349 ~~~~~~~~~~~s~~~~~~a~~~r~~~~~~~~~~~~~~Dvll~Pt~~~~ap~~~~~~~~~~~~~~~~~~~t~~~nl~G~Pa 428 (605)
++.+++.+..++..+|.++++.|+.+++.++++|+++|+||+||+|.+++..+ ..............||.++|++|+|+
T Consensus 294 ~~~~l~~g~~~sa~~~~~a~~~r~~l~~~~~~~~~~~DvLl~Pt~p~~~~~~~-~~~~~~~~~~~~~~yT~~~Nl~glPA 372 (561)
T TIGR02713 294 VRGIITSATRFSAADAFAAQYRLAALRRKAEALLAGVDVLLVPTAPTHPTIEE-VLADPVGLNSRLGTYTNFVNLLDLCA 372 (561)
T ss_pred HHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhcCCEEEeCCCCCCCCchh-ccCCchhhhhhhhcccccccccCCce
Confidence 99999999999999999999999999999999999999999999999875432 21111122223345899999999999
Q ss_pred eeeecccC-CCCCceeEEeeccCCchhHHhHHHHHHhH
Q 007401 429 VAIPIGKY-NEHPISISFITYHGGDKFLLDTVLDLYDS 465 (605)
Q Consensus 429 isvP~G~~-~glp~g~~~~~~~~~d~~ll~~a~~l~~~ 465 (605)
++||+|+. +|+|+|+|+++++++|..+++++..++..
T Consensus 373 isvP~g~~~~GlPvGvqlig~~~~D~~LL~~A~~le~~ 410 (561)
T TIGR02713 373 VAVPAGFRSDGLPFGVTLIGPAFHDAALASLGRRLQAA 410 (561)
T ss_pred EEeecccCCCCCCEEEEEEcCCCChHHHHHHHHHHHhc
Confidence 99999987 89999999999999999999999999875
No 26
>PF01425 Amidase: Amidase; InterPro: IPR000120 Amidase signature (AS) enzymes are a large group of hydrolytic enzymes that contain a conserved stretch of approximately 130 amino acids known as the AS sequence. They are widespread, being found in both prokaryotes and eukaryotes. AS enzymes catalyse the hydrolysis of amide bonds (CO-NH2), although the family has diverged widely with regard to substrate specificity and function. Nonetheless, these enzymes maintain a core alpha/beta/alpha structure, where the topologies of the N- and C-terminal halves are similar. AS enzymes characteristically have a highly conserved C-terminal region rich in serine and glycine residues, but devoid of aspartic acid and histidine residues, therefore they differ from classical serine hydrolases. These enzymes posses a unique, highly conserved Ser-Ser-Lys catalytic triad used for amide hydrolysis, although the catalytic mechanism for acyl-enzyme intermediate formation can differ between enzymes []. Examples of AS enzymes include: Peptide amidase (Pam) [], which catalyses the hydrolysis of the C-terminal amide bond of peptides. Fatty acid amide hydrolases [], which hydrolyse fatty acid amid substrates (e.g. cannabinoid anandamide and sleep-inducing oleamide), thereby controlling the level and duration of signalling induced by this diverse class of lipid transmitters. Malonamidase E2 [], which catalyses the hydrolysis of malonamate into malonate and ammonia, and which is involved in the transport of fixed nitrogen from bacteroids to plant cells in symbiotic nitrogen metabolism. Subunit A of Glu-tRNA(Gln) amidotransferase [],a heterotrimeric enzyme that catalyses the formation of Gln-tRNA(Gln) by the transamidation of misacylated Glu-tRNA(Gln) via amidolysis of glutamine. ; GO: 0016884 carbon-nitrogen ligase activity, with glutamine as amido-N-donor; PDB: 1OCL_B 1OBK_A 1OBL_B 1OBJ_A 1OCM_B 1OCH_A 1OCK_B 1OBI_A 1O9Q_A 1O9N_B ....
Probab=100.00 E-value=6.6e-82 Score=676.85 Aligned_cols=397 Identities=29% Similarity=0.370 Sum_probs=299.4
Q ss_pred HHHHHhhcCcccCCCCcCceeeecccCCCCCCC-------CCCCCCCCCCceEEEeeccCCCCcccCCCchhhhhcCCCC
Q 007401 33 ETLRRRRNPKLNGRVDFGAFLERFELIPFPQPP-------PPAARQPLAGLKFAIKDVFDVKGYVTGFGSPDWKRDHHEA 105 (605)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~a~~~~~~~~a~~~a~-------~~~~~gpL~Gvp~~vKD~~~~~G~~tt~Gs~~~~~~~~~~ 105 (605)
|+++.+++||++.||.+|||++..++.++++|+ .+...||||||||+|||+|+++|++||+||..|.+ .++
T Consensus 1 e~~~~~~~ri~~~~~~~na~~~~~~~~a~~~A~~~d~~~~~~~~~~pL~Gip~~vKD~~~~~g~~tt~G~~~~~~--~~~ 78 (441)
T PF01425_consen 1 ELVEAYLARIEAYNPELNAFVEVDFDEALAQARELDARRARGKPRGPLHGIPISVKDNIDVAGLPTTAGSPALAD--NPP 78 (441)
T ss_dssp HHHHHHHHHHHHHHHHH--EEEEEHHHHHHHHHHHHHHHHTTSSSSTTTT-EEEEETTBSBTTSBB-TTSGGGTT--BBB
T ss_pred CHHHHHHHHHHHhCcccCEEEEECcHHHHHHHHHHHHHHhhcCCCCCCCCCceeccccccccccccccccccccC--cCc
Confidence 789999999999999999999998888877664 46788999999999999999999999999999985 678
Q ss_pred CCChHHHHHHHhCCCeEeeecccccccccCCCCCCCCCCCCCCCCCCCCCCCCchHHHHHHHhcCCceeeccCCCCccch
Q 007401 106 ERTAVVVTLLLKNGATCIGKTVLDEFAFGITGENKHYGTPVNPQMPSHIPGGSSSGSAVAVAAQLVDFALGTDTIGCVRV 185 (605)
Q Consensus 106 ~~da~~V~rL~~aGai~~GKt~~~e~~~~~~~~n~~~G~~~NP~~~~~~~GGSSgGsaaaVAag~~~~a~GtD~gGSiR~ 185 (605)
.+||++|+||++||||++||||||||+++.++.|+.||+|+||||++++|||||||||||||+|++|+|||||||||||+
T Consensus 79 ~~~a~~v~~L~~aGai~~gkt~~~e~~~~~~~~~~~~g~~~Np~~~~~~~GGSS~Gsaaavaag~~~~a~GtDtgGSiR~ 158 (441)
T PF01425_consen 79 TEDAPVVQRLRAAGAIIIGKTNMPEFAMGPTTSNPLYGRTRNPWNPSRTPGGSSGGSAAAVAAGFVPLAIGTDTGGSIRI 158 (441)
T ss_dssp SSS-HHHHHHHHTT-EEEEEE--SGGGCSSSSTTTTTEE-EBTTBTTBE--SSSHHHHHHHHTTSSSEEEEEESSSTTHH
T ss_pred ccccchhhheecccccceeeecccceeccccccccccccccCcccccccccccccccccccceecccccccccccccccC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcccccccCCCCCccCCCCccCCCCCccccccccCHHHHHHHHHHHccCCCCC-------------------cccCc
Q 007401 186 PASFCGILGYRPSHGTVSMIGVLPNSQSLDTVGLLARNASILHRVGHVLLQLNAVE-------------------PRRAR 246 (605)
Q Consensus 186 PAa~~Gv~GlkPt~G~v~~~G~~p~~~~~d~~G~~ar~~~d~~~v~~~~~~~~~~~-------------------~~~~~ 246 (605)
||+||||||||||+|+||+.|++|+++++|++|||+||++|++.+++++.+.+..+ ...+.
T Consensus 159 PAa~~Gv~GlkPT~G~vs~~G~~~~~~~~d~~GpmaRsv~Dl~~~l~vl~g~~~~d~~~~~~~~~~~~~~~~~~~~~~~l 238 (441)
T PF01425_consen 159 PAAFCGVVGLKPTRGRVSRDGVFPLSPSFDTVGPMARSVEDLALLLDVLAGPDPWDPDSLPVPPPPPDFDAPLPKSLKGL 238 (441)
T ss_dssp HHHHHTSEEEE-STTSS--TTB-CSSTTT-EEEEEESSHHHHHHHHHHHBSCBTTBTTSCSTT--SS-CSTTTTSTTTT-
T ss_pred chhccccceeccccccccccccccccccccccccccCcHHHHHHHHHHhcCCCccCCCccccccccccccccccccccCc
Confidence 99999999999999999999999999999999999999999999999998654221 11234
Q ss_pred eeeeccchhhhcCCchhhHHHHHHHHHHHHhCCCCCccccccccccccCcchhhhhhcCCCCCCchhHHHHHHHHHHHhh
Q 007401 247 RLIFADDIFQLSKVPKLKTIHVISKAIESLSGYQNPEHMNVGQYIASNVPSLKGLRAQSTSPENGTATLKALSSVMLSLQ 326 (605)
Q Consensus 247 ~l~~~~~~~~~~~~~~~~~~~~~~~a~~~l~g~~~~~~~~l~~~v~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 326 (605)
++.+..+.+. ....++++.++++++++.|+..+. ..++...|.+.+... .+..+.
T Consensus 239 rIGv~~~~~~-~~~~~~~v~~a~~~a~~~L~~~G~-------~vv~~~~p~~~~~~~-----------------~~~~~~ 293 (441)
T PF01425_consen 239 RIGVPRDDGQ-WVPVDPEVRRAFEEAAEALEAAGA-------EVVEVDLPDLDEAMD-----------------AYYRIF 293 (441)
T ss_dssp EEEEEGGGG--SSTSSHHHHHHHHHHHHHHHHTT--------EEEEE--TTGGHHHH-----------------HHHHHH
T ss_pred cccccccccc-cccccHHHHHHHHHHHHhhccccc-------ccccccCchHHHHHH-----------------HHhhhH
Confidence 5666555431 123467899999999999863332 112223444332211 001111
Q ss_pred hhhhHhh------HHH-HHHhcCCCCChhHHHHHHHHhcCCH-----HHHHHHHHHHHHHHHHHHHHhCCCcEEEEeCCC
Q 007401 327 RYEFKTI------YEE-WVKSAKPRLGYNVFERVLEAINTTQ-----DNIKILYKVRNEMRAALQRLLKDDKILVIPTVS 394 (605)
Q Consensus 327 ~~e~~~~------~~~-~~~~~~~~~~~~~~~~~~~~~~~s~-----~~~~~a~~~r~~~~~~~~~~~~~~Dvll~Pt~~ 394 (605)
..+.... +.. +.......+.+.+..++..+..... ..|.++++.|..+++.+.++|+++|+||+||++
T Consensus 294 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~r~~~~~~~~~~~~~~D~ll~Pt~~ 373 (441)
T PF01425_consen 294 VSEGAANLARYKDFARLLAKWRDPPLSPIVRSRLEQGAAISSAEDDSEYYLQAQRRRARLRRRFDELFEEYDALLTPTTP 373 (441)
T ss_dssp HHHHHHHHTTTCSHHHHHHHHHHHHSHHHHHHHHHHHHHHHCTTTTTTHHHHHHHHHHHHHHHHHHHHHHSSEEEEESSS
T ss_pred HHHHHHHHhhhhHHHHhhhcccccccccchhhhhhhhhhhhhccccHHHHHHHHHHHHHHHHHHHHHHhhcceecccCCC
Confidence 1111111 111 1112233456667666666543322 338999999999999999999999999999999
Q ss_pred CCCccCCccccc---ch--hhhhchhhhcccccccCCceeeeecccC-CCCCceeEEeeccCCchhHH
Q 007401 395 DPPLKLNTKKTY---SA--EFHDRTLVLSSIGSMSGCCQVAIPIGKY-NEHPISISFITYHGGDKFLL 456 (605)
Q Consensus 395 ~~ap~~~~~~~~---~~--~~~~~~~~~t~~~nl~G~PaisvP~G~~-~glp~g~~~~~~~~~d~~ll 456 (605)
.+||+++..... .. .....+..+|.++|++|+|+++||+|.. +|+|+|+|+++++++|..||
T Consensus 374 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~t~~~n~~g~PaisvP~g~~~~GlPvGvqlvg~~~~D~~LL 441 (441)
T PF01425_consen 374 VPAPPIGEPSPLGPDYTALWNLLDFTAYTSPANLAGLPAISVPVGFDPDGLPVGVQLVGRPGSDEKLL 441 (441)
T ss_dssp SS-BBTTTTCCCTSCHHHHHHHHTTTTTTHHHHHHTHHEEEEEEEEETTTEEEEEEEEESTTBHHHHH
T ss_pred cCCCccccccccccchhhhhhhhhhhccccccccccCcceeeecCCCCCCcCEeEEEECCCCCccCcC
Confidence 999999875421 11 1122344578999999999999999997 89999999999999999886
No 27
>PRK06828 amidase; Provisional
Probab=100.00 E-value=1.5e-79 Score=650.53 Aligned_cols=396 Identities=20% Similarity=0.220 Sum_probs=303.7
Q ss_pred hhHHHHHHHHHhhcCcccCC---CCcCceeeecccCCCCCCC-------CCCCCCCCCCceEEEeeccCCCC-cccCCCc
Q 007401 27 GFVVLAETLRRRRNPKLNGR---VDFGAFLERFELIPFPQPP-------PPAARQPLAGLKFAIKDVFDVKG-YVTGFGS 95 (605)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~---~~~~a~~~~~~~~a~~~a~-------~~~~~gpL~Gvp~~vKD~~~~~G-~~tt~Gs 95 (605)
+.+|++|+++.+++||.+.| +.+|||++..++ ++++|+ .+...||||||||+|||||+|+| ++||+||
T Consensus 25 g~~t~~el~~~~l~ri~~~~~~~~~lna~~~~~~~-al~~A~~~d~~~~~g~~~gpL~GvPv~vKD~~~v~gg~~tt~Gs 103 (491)
T PRK06828 25 GKLTSKELVMYYLHRIAKYDQDGPKINSILEINPD-AIFIAEALDHERKIKGVRGPLHGIPVLLKDNIETNDSMHTSAGT 103 (491)
T ss_pred CCCCHHHHHHHHHHHHHHhCCCCCeeEEEEecCHH-HHHHHHHHHHHHhcCCCCCCccCceeeeeeeEEecCCCcCCcCc
Confidence 44999999999999999999 589999998766 444443 34567999999999999999996 9999999
Q ss_pred hhhhhcCCCCCCChHHHHHHHhCCCeEeeeccccccccc-----CCCCCCCCCCCCCCCCC---CCCCCCCchHHHHHHH
Q 007401 96 PDWKRDHHEAERTAVVVTLLLKNGATCIGKTVLDEFAFG-----ITGENKHYGTPVNPQMP---SHIPGGSSSGSAVAVA 167 (605)
Q Consensus 96 ~~~~~~~~~~~~da~~V~rL~~aGai~~GKt~~~e~~~~-----~~~~n~~~G~~~NP~~~---~~~~GGSSgGsaaaVA 167 (605)
..+.+ .++.+||++|+|||+|||||+||||||||+++ .+|.|++||+|+||||+ .|+|||||||||+|||
T Consensus 104 ~~~~~--~~~~~da~vV~~Lr~aGaii~GKTn~~Efa~~~~~~~~~g~n~~~G~t~NP~d~~~~~r~pGGSSgGsAaaVA 181 (491)
T PRK06828 104 IALEQ--HISSEDAFLVTKLREAGAVILGKANMTELANFMSFEMWAGYSARGGQTINPYGTGEDDMFVGGSSTGSAIAVA 181 (491)
T ss_pred HHHcC--CCCCCChHHHHHHHHCCCEEEeecChHHHhhccCCCCCCCcCCCCCCcCCCCCCccCCcCCCcCchHHHHHHH
Confidence 99875 67889999999999999999999999999974 58899999999999999 6899999999999999
Q ss_pred hcCCceeeccCCCCccchhhhhcccccccCCCCCccCCCCccCCCCCccccccccCHHHHHHHHHHHccCCCCC------
Q 007401 168 AQLVDFALGTDTIGCVRVPASFCGILGYRPSHGTVSMIGVLPNSQSLDTVGLLARNASILHRVGHVLLQLNAVE------ 241 (605)
Q Consensus 168 ag~~~~a~GtD~gGSiR~PAa~~Gv~GlkPt~G~v~~~G~~p~~~~~d~~G~~ar~~~d~~~v~~~~~~~~~~~------ 241 (605)
+|++|++||||||||||+||+||||||||||+||||+.|++|+++++|++|||+|+++|++.+++++.+.+..+
T Consensus 182 ag~~~~aiGtDtgGSiRiPAa~cGvvGlKPT~G~vs~~G~~p~~~s~d~~Gp~arsv~D~a~~~~~l~g~d~~d~~~~~~ 261 (491)
T PRK06828 182 ANFTVVSVGTETDGSILSPAVQNSVVGIKPTVGLISRRGIIPFTYSQDTAGPFARTVTDAAILLGSLTGVDEKDVVTHKS 261 (491)
T ss_pred cCCCceEeecCCCCccccchhhcCceeecCCCCCccCCCCCCCccCCCeeccccCCHHHHHHHHHHHhCCCccCcccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999987643211
Q ss_pred ---------------cccCceeeeccchhhhcCCchhhHHHHHHHHHHHHhCCCCCccccccccccc--cCcchhhhhhc
Q 007401 242 ---------------PRRARRLIFADDIFQLSKVPKLKTIHVISKAIESLSGYQNPEHMNVGQYIAS--NVPSLKGLRAQ 304 (605)
Q Consensus 242 ---------------~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~~l~g~~~~~~~~l~~~v~~--~~p~~~~~~~~ 304 (605)
...+.+|.+..+.+......++++.++++++++.|+..+. .+.+ .+|.+.....
T Consensus 262 ~~~~~~~~~~~~~~~~~~~lrigv~~~~~~~~~~~~~~v~~a~~~a~~~L~~~G~--------~v~~~~~~p~~~~~~~- 332 (491)
T PRK06828 262 EGIAEHDYTKYLDANGLNGAKIGVYNNAPKEYYESGEYDEKLFKETIEVLRSEGA--------TVVEDIDIPSFHREWS- 332 (491)
T ss_pred CcCCCCchhhhhccccCCCCEEEEEcCccccccCCCHHHHHHHHHHHHHHHhcCC--------EEEecccCccchhHHH-
Confidence 0123455553221100012457889999999999863332 1111 1222111000
Q ss_pred CCCCCCchhHHHHHHHHHHHhhhh----hhH---hhHHHHH------HhcCCCCChhHHH-HHHHHhcCCHHHHHHHHHH
Q 007401 305 STSPENGTATLKALSSVMLSLQRY----EFK---TIYEEWV------KSAKPRLGYNVFE-RVLEAINTTQDNIKILYKV 370 (605)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~l~~~----e~~---~~~~~~~------~~~~~~~~~~~~~-~~~~~~~~s~~~~~~a~~~ 370 (605)
......+....+..+ ... ....+.+ ......+++.+.. +++.+..++..+|.++++.
T Consensus 333 ---------~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~y~~a~~~ 403 (491)
T PRK06828 333 ---------WGVLLYELKHSLDNYLSKLPSTIPVHSISELMEFNENIAERALKYGQTKLERRKDFPNTLRNPEYLNARLE 403 (491)
T ss_pred ---------HHHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHhhhchhhhhccCHHHHHHHHhcCCCCChHHHHHHHHH
Confidence 000000110000000 000 0000111 1222356775444 4667777889999999988
Q ss_pred HHHH--HHHHHHHhCC--CcEEEEeCCCCCCccCCcccccchhhhhchhhhcccccccCCceeeeecccC-CCCCceeEE
Q 007401 371 RNEM--RAALQRLLKD--DKILVIPTVSDPPLKLNTKKTYSAEFHDRTLVLSSIGSMSGCCQVAIPIGKY-NEHPISISF 445 (605)
Q Consensus 371 r~~~--~~~~~~~~~~--~Dvll~Pt~~~~ap~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~G~~-~glp~g~~~ 445 (605)
|..+ ++.++++|++ +|+||+||++..+ +.|++|+|++|||+|+. +|||+|+|+
T Consensus 404 r~~~~~~~~~~~~~~~~~~D~ll~Pt~~~~~----------------------~~~~~GlPaisvP~G~~~~GlPvGlQl 461 (491)
T PRK06828 404 DIYFSQEQGIDFALEKYNLDAILFPSYIGST----------------------ICAKAGYPSIAIPAGYMEGGRPFGITL 461 (491)
T ss_pred HHHhhhHHHHHHHHHhcCCCEEEeCCCCccc----------------------chhhcCCCeEEeecCCCCCCcCeEEEE
Confidence 8775 4799999984 8999999987642 24699999999999987 899999999
Q ss_pred eeccCCchhHHhHHHHHHhH
Q 007401 446 ITYHGGDKFLLDTVLDLYDS 465 (605)
Q Consensus 446 ~~~~~~d~~ll~~a~~l~~~ 465 (605)
++++++|..|++++..+|+.
T Consensus 462 ig~~~~D~~LL~~A~a~E~~ 481 (491)
T PRK06828 462 ASTAFSEGTLIKLAYAFEQA 481 (491)
T ss_pred ECCCCCHHHHHHHHHHHHHh
Confidence 99999999999999998764
No 28
>PRK11910 amidase; Provisional
Probab=100.00 E-value=4.1e-78 Score=638.74 Aligned_cols=390 Identities=24% Similarity=0.277 Sum_probs=295.7
Q ss_pred HHHHhhh-----hHHHHHHHHHhhcCcccCCC---CcCceeeecccCCCCCCCC-----CCCCCCCCCceEEEeeccCCC
Q 007401 21 IGVSVVG-----FVVLAETLRRRRNPKLNGRV---DFGAFLERFELIPFPQPPP-----PAARQPLAGLKFAIKDVFDVK 87 (605)
Q Consensus 21 ~~~~~~~-----~~~~~~~~~~~~~~~~~~~~---~~~a~~~~~~~~a~~~a~~-----~~~~gpL~Gvp~~vKD~~~~~ 87 (605)
|+.+|+. .+|++|+++.+++||.+.|+ .+|||++..++ ++++|+. ...+||||||||+|||||+++
T Consensus 166 ti~~L~~~l~~g~lT~~elv~a~L~RI~~~n~~g~~LnA~i~~~~~-Al~~A~~lD~~~~~~~gPL~GIPv~VKDni~t~ 244 (615)
T PRK11910 166 DVTKLQQLIATKQLSYKELAGIYLNRIKKYDQNGLNLNAITEINPT-IIAEAEQLDKENTTNKSALYGMPVLLKDNIGTK 244 (615)
T ss_pred CHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCCCceeEEEEcCHH-HHHHHHHHHHHhccCCCCcCCCEEEEEcCcccC
Confidence 4555553 39999999999999999997 89999998765 4443321 123589999999999999999
Q ss_pred CcccCCCchhhhhcCCCCCCChHHHHHHHhCCCeEeeeccccccccc-----CCCCCCCCCCCCCCCCCCCCCCCCchHH
Q 007401 88 GYVTGFGSPDWKRDHHEAERTAVVVTLLLKNGATCIGKTVLDEFAFG-----ITGENKHYGTPVNPQMPSHIPGGSSSGS 162 (605)
Q Consensus 88 G~~tt~Gs~~~~~~~~~~~~da~~V~rL~~aGai~~GKt~~~e~~~~-----~~~~n~~~G~~~NP~~~~~~~GGSSgGs 162 (605)
|++||+||..|.+ .++.+||++|+|||+|||||+||||||||+++ .+++|++||+|+||||++|+||||||||
T Consensus 245 G~pTTaGS~al~~--~~p~~DA~vV~rLr~AGAIIlGKTNm~EfA~~~~~~~~~g~s~~~G~t~NP~~~~r~pGGSSsGS 322 (615)
T PRK11910 245 ELPTSAGTVALKD--WVIGKDATIVENLKANGALILGKTNMSEWAAGMDEDLPNGYSGKKGQSKNPYSSNLDPSGSSSGS 322 (615)
T ss_pred CCccCcccHhhcC--CCCCCCHHHHHHHHHCCCEEEEEeCcchhhhCCCCCCCCCCCCCCCCcCCCCCCCCCCCCCCchH
Confidence 9999999999975 67889999999999999999999999999976 3578899999999999999999999999
Q ss_pred HHHHHhcCCceeeccCCCCccchhhhhcccccccCCCCCccCCCCccCCCCCccccccccCHHHHHHHHHHHccCCCCC-
Q 007401 163 AVAVAAQLVDFALGTDTIGCVRVPASFCGILGYRPSHGTVSMIGVLPNSQSLDTVGLLARNASILHRVGHVLLQLNAVE- 241 (605)
Q Consensus 163 aaaVAag~~~~a~GtD~gGSiR~PAa~~Gv~GlkPt~G~v~~~G~~p~~~~~d~~G~~ar~~~d~~~v~~~~~~~~~~~- 241 (605)
|||||+|++++|||||||||||+||+||||||||||+||||+.|++|+++++|++|||+|+|.|++.+++++.+.+..+
T Consensus 323 AAAVAaG~a~~AiGTDTgGSIR~PAa~cGvVGlKPT~G~vSr~GviPls~slDtvGPmaRsV~D~a~ll~vi~g~~~~~~ 402 (615)
T PRK11910 323 ATAATSDFAAIAIGTETNGSIITPASAQSAVGYKPSQGLVNNKGIIPLSSRFDTPGPLTRTVNDAYLTTNALTNTTSNPP 402 (615)
T ss_pred HHHHhcCCceEEeecCCCCccccchHHcCceeEecCCCCCCCCCCcCCcCCCCeeccccCCHHHHHHHHHHhcCCCCcCc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999998644221
Q ss_pred ----cccCceeeeccchhhhcCCchhhHHHHHHHHHHHHhCCCCCccccccccccc--cCcchhhhhhcCCCCCCchhHH
Q 007401 242 ----PRRARRLIFADDIFQLSKVPKLKTIHVISKAIESLSGYQNPEHMNVGQYIAS--NVPSLKGLRAQSTSPENGTATL 315 (605)
Q Consensus 242 ----~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~~l~g~~~~~~~~l~~~v~~--~~p~~~~~~~~~~~~~~~~~~~ 315 (605)
...+.|++++.+. ..+++..++.++++.|+..+. .+.+ .+|.+...
T Consensus 403 l~~~~lkglRIGv~~~~------~~~~v~~a~~~a~~~L~~~Ga--------~Vve~~~~p~~~~~-------------- 454 (615)
T PRK11910 403 LSTDALKGKRIGLLADG------ESNEETAVIKKIKLDLQKAGA--------TIIEGIAVGEFEQK-------------- 454 (615)
T ss_pred cCcccCCCCEEEEECCC------CCHHHHHHHHHHHHHHHHCCC--------EEEeCCCCccHHHH--------------
Confidence 1223455554321 234667778888887763332 1111 12222111
Q ss_pred HHHHHHHHHhhhhhhHhhHHHHHHhc-----------------C---CCCChhHHHHHHHHh-cCCHHH-HHHHHHHHHH
Q 007401 316 KALSSVMLSLQRYEFKTIYEEWVKSA-----------------K---PRLGYNVFERVLEAI-NTTQDN-IKILYKVRNE 373 (605)
Q Consensus 316 ~~~~~~~~~l~~~e~~~~~~~~~~~~-----------------~---~~~~~~~~~~~~~~~-~~s~~~-~~~a~~~r~~ 373 (605)
...+..+..+|+...+..|+... . ..+++.. ++..+. .++.++ +..+++.|..
T Consensus 455 ---~~~~~~l~~~E~~~~l~~yl~~~~~~v~sL~dl~~fn~~~~~~~~~~gq~~--~~~~~~~~~~~~~~~~~~~~~~~~ 529 (615)
T PRK11910 455 ---DTDYASLLNADFKHDLNQFLQVNHSPMSTLESIIQFNQTNPTRNMKYGQSE--LVKSQQSTITKQQADNLASNLIQS 529 (615)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHhcCcccccCcCHHH--HHhhhccCCCHHHHHHHHHHHHHH
Confidence 11112223344444444444211 1 2233331 122222 134333 2335667777
Q ss_pred HHHHHHHHhC--CCcEEEEeCCCCCCccCCcccccchhhhhchhhhcccccccCCceeeeecccC--CCCCceeEEeecc
Q 007401 374 MRAALQRLLK--DDKILVIPTVSDPPLKLNTKKTYSAEFHDRTLVLSSIGSMSGCCQVAIPIGKY--NEHPISISFITYH 449 (605)
Q Consensus 374 ~~~~~~~~~~--~~Dvll~Pt~~~~ap~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~G~~--~glp~g~~~~~~~ 449 (605)
+++.++++|+ ++|+||+|+.... .....+++|+|+||||+|+. +|+|+|+|+++++
T Consensus 530 ~~~~l~~~~~~~~lDalv~P~~~~~--------------------~~~~~~~aG~PaItVP~G~~~~~GlPvGlqliG~~ 589 (615)
T PRK11910 530 SQNELDSVLQKDKLDAVVTIGMGGS--------------------VMFLAPIAGNPELTIPAGYDEESNQPISLTFITAR 589 (615)
T ss_pred HHHHHHHHHHHCCCcEEEeCCCCCc--------------------chhhhhhcCCCeEEecccCCCCCCcCeEEEEECCC
Confidence 8888999996 7999999973210 01123599999999999987 4999999999999
Q ss_pred CCchhHHhHHHHHHhHH
Q 007401 450 GGDKFLLDTVLDLYDSL 466 (605)
Q Consensus 450 ~~d~~ll~~a~~l~~~~ 466 (605)
++|..|++++..+|+..
T Consensus 590 ~sE~~LL~~A~a~Eq~t 606 (615)
T PRK11910 590 NSDKILLNMGYAYEQQS 606 (615)
T ss_pred CCHHHHHHHHHHHHHhc
Confidence 99999999999987743
No 29
>PRK06707 amidase; Provisional
Probab=100.00 E-value=2.6e-76 Score=628.38 Aligned_cols=382 Identities=22% Similarity=0.279 Sum_probs=290.3
Q ss_pred hhHHHHHHHHHhhcCcccCC---CCcCceeeecccCCCCCCC------CCCCCCCCCCceEEEeeccCC-CCcccCCCch
Q 007401 27 GFVVLAETLRRRRNPKLNGR---VDFGAFLERFELIPFPQPP------PPAARQPLAGLKFAIKDVFDV-KGYVTGFGSP 96 (605)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~---~~~~a~~~~~~~~a~~~a~------~~~~~gpL~Gvp~~vKD~~~~-~G~~tt~Gs~ 96 (605)
+.+|++|+++.+++||.+.| +.+|||++..++ ++++|+ .....||||||||+|||||++ +|++||+||.
T Consensus 83 g~lt~~el~~~~l~ri~~~~~~~~~lna~~~~~~~-al~~A~~~d~~~~~~~~~pL~GiPi~vKD~i~~~~g~~TtaGs~ 161 (536)
T PRK06707 83 GKLSYEELTSIYLFRIQEHDQNGITLNSVTEINPN-AMEEARKLDQERSRNKKSNLYGIPVVVKDNVQTAKVMPTSAGTY 161 (536)
T ss_pred CCCCHHHHHHHHHHHHHHhCCCCCceEEEEECCHH-HHHHHHHHHHHHhcCCCCCcCCCeEEEecccccCCCCccCcccH
Confidence 34899999999999999988 579999998765 444432 112358999999999999999 9999999999
Q ss_pred hhhhcCCCCCCChHHHHHHHhCCCeEeeeccccccccc-----CCCCCCCCCCCCCCCCC-CCCCCCCchHHHHHHHhcC
Q 007401 97 DWKRDHHEAERTAVVVTLLLKNGATCIGKTVLDEFAFG-----ITGENKHYGTPVNPQMP-SHIPGGSSSGSAVAVAAQL 170 (605)
Q Consensus 97 ~~~~~~~~~~~da~~V~rL~~aGai~~GKt~~~e~~~~-----~~~~n~~~G~~~NP~~~-~~~~GGSSgGsaaaVAag~ 170 (605)
.+.+ .++.+||++|+|||+|||||+||||||||++. .+|+|++||+|+||||+ .++|||||||||||||+|+
T Consensus 162 ~l~~--~~~~~DA~vV~rLr~AGAiilGKtnm~E~a~~~~~~~~~g~s~~~G~t~NP~~~~~~~pGGSSsGSAaAVAag~ 239 (536)
T PRK06707 162 VLKD--WIADQDATIVKQLKEEGAFVLGKANMSEWANYLSFTMPSGYSGKKGQNLNPYGPIKFDTSGSSSGSATVVAADF 239 (536)
T ss_pred hhcc--CCCCCChHHHHHHHHCCCEEEEecCchhhhccCCCCCCCCCCCCCCCCCCCCCcccCCCCCCCchHHHHHhCCC
Confidence 9975 56789999999999999999999999999963 57889999999999998 6899999999999999999
Q ss_pred CceeeccCCCCccchhhhhcccccccCCCCCccCCCCccCCCCCccccccccCHHHHHHHHHHHccCCCCCc--------
Q 007401 171 VDFALGTDTIGCVRVPASFCGILGYRPSHGTVSMIGVLPNSQSLDTVGLLARNASILHRVGHVLLQLNAVEP-------- 242 (605)
Q Consensus 171 ~~~a~GtD~gGSiR~PAa~~Gv~GlkPt~G~v~~~G~~p~~~~~d~~G~~ar~~~d~~~v~~~~~~~~~~~~-------- 242 (605)
++++||||||||||+||+||||||||||+|+||+.|++|+++++|++|||+|+|.|++.+++++.+.+..+.
T Consensus 240 ~~~aiGtDtgGSIr~PAs~~GvvGlKPT~G~vs~~Gv~p~s~slDt~Gp~artV~D~a~~l~~~~g~d~~d~~~~~~~~~ 319 (536)
T PRK06707 240 APLAVGTETTGSIVAPAAQQSVVGLRPSLGMVSRTGIIPLAETLDTAGPMARTVKDAATLFNAMIGYDEKDVMTEKVKDK 319 (536)
T ss_pred CceEEecCCCCcccccHHHcCeEEEeCCCCcccCCCCcCcccccCeecCeeCCHHHHHHHHHHHcCCCCCcccccccccc
Confidence 999999999999999999999999999999999999999999999999999999999999999886442210
Q ss_pred -------------ccCceeeeccchhhhcCCchhhHHHH-HHHHHHHHhCCCCCcccccccccc-ccCcchhhhhhcCCC
Q 007401 243 -------------RRARRLIFADDIFQLSKVPKLKTIHV-ISKAIESLSGYQNPEHMNVGQYIA-SNVPSLKGLRAQSTS 307 (605)
Q Consensus 243 -------------~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~a~~~l~g~~~~~~~~l~~~v~-~~~p~~~~~~~~~~~ 307 (605)
..+.|+++..+.. ..+++.++ +.++++.|+..+. +.++ ..+|...
T Consensus 320 ~~~~~~~~l~~~~l~~~rigv~~~~~-----~~~~~~~a~~~~a~~~L~~~Ga-------~iv~~~~l~~~~-------- 379 (536)
T PRK06707 320 ERIDYTKDLSIDGLKGKKIGLLFSVD-----QQDENRKAVAEKIRKDLQDAGA-------ILTDYIQLNNGG-------- 379 (536)
T ss_pred CCcchhhhccccCCCCCEEEEECCcC-----CCHHHHHHHHHHHHHHHHHcCC-------EEEeccCCchhh--------
Confidence 1234455443321 23455656 4777777753332 0111 1122100
Q ss_pred CCCchhHHHHHHHHHHHhhhhhhHhhHHHHHHhcCC----------CC-ChhHHHHHHHHhcC---------CHHH-HHH
Q 007401 308 PENGTATLKALSSVMLSLQRYEFKTIYEEWVKSAKP----------RL-GYNVFERVLEAINT---------TQDN-IKI 366 (605)
Q Consensus 308 ~~~~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~----------~~-~~~~~~~~~~~~~~---------s~~~-~~~ 366 (605)
.. ...+..+|+...+..|+..... .+ .+.+..++..+..+ +.++ +..
T Consensus 380 -------~~-----~~~~~~~e~~~~l~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 447 (536)
T PRK06707 380 -------VD-----NLQTLEYEFKHNVNDYFSQQKNVPVKSLEEIIAFNKKDSKRRIKYGQTLIEASEKSAITKDEFEKV 447 (536)
T ss_pred -------HH-----HHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHhcCHHHHHHHHccchhhhhhhhcccccHHHHHH
Confidence 00 0011123333333333221100 02 14445555444322 1223 345
Q ss_pred HHHHHHHHHHHHHHHhC--CCcEEEEeCCCCCCccCCcccccchhhhhchhhhcccccccCCceeeeecccC-CCCCcee
Q 007401 367 LYKVRNEMRAALQRLLK--DDKILVIPTVSDPPLKLNTKKTYSAEFHDRTLVLSSIGSMSGCCQVAIPIGKY-NEHPISI 443 (605)
Q Consensus 367 a~~~r~~~~~~~~~~~~--~~Dvll~Pt~~~~ap~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~G~~-~glp~g~ 443 (605)
+.+.|..+++.++++|+ ++|+||+|.. ..|.++|++|+|+||||+|+. +|+|+|+
T Consensus 448 ~~~~r~~~~~~~~~~~~~~~~Dall~p~~----------------------~~t~~an~aG~PaitvP~G~~~~GlP~Gl 505 (536)
T PRK06707 448 VQTSQENAKKELDRYLVEKGLDALVMINN----------------------EEVLLSAVAGYPELAVPAGYDNNGEPVGA 505 (536)
T ss_pred HHHHHHHHHHHHHHHHhhCCCCEEEecCC----------------------CcchhhHhcCCCeEEEecccCCCCCCeEE
Confidence 66778888999999998 8999999731 025678999999999999987 8999999
Q ss_pred EEeeccCCchhHHhHHHHHHhH
Q 007401 444 SFITYHGGDKFLLDTVLDLYDS 465 (605)
Q Consensus 444 ~~~~~~~~d~~ll~~a~~l~~~ 465 (605)
|+++++++|..|++++..+|+.
T Consensus 506 qlig~~~~e~~LL~~A~~~E~~ 527 (536)
T PRK06707 506 VFVGKQFGEKELFNIGYAYEQQ 527 (536)
T ss_pred EEECCCCChHHHHHHHHHHHHh
Confidence 9999999999999999998764
No 30
>PRK06565 amidase; Validated
Probab=100.00 E-value=1.2e-73 Score=600.52 Aligned_cols=429 Identities=21% Similarity=0.214 Sum_probs=297.3
Q ss_pred hhHHHHHHHHHhhcCcccCC-----CCcCceeeecccCCCCCCC-------CCCCCCCCCCceEEEeeccCCCCcccCCC
Q 007401 27 GFVVLAETLRRRRNPKLNGR-----VDFGAFLERFELIPFPQPP-------PPAARQPLAGLKFAIKDVFDVKGYVTGFG 94 (605)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~-----~~~~a~~~~~~~~a~~~a~-------~~~~~gpL~Gvp~~vKD~~~~~G~~tt~G 94 (605)
+.+|++|+++++++||.+.| +.+|||+...++ ++++|+ .++.+||||||||+|||||+++|++||+|
T Consensus 19 g~~t~~elv~a~l~ri~~~~~~~~~~~lna~~~~~~~-Al~~A~~~D~~~~~g~~~gpL~GIPi~vKD~~~v~G~~TT~G 97 (566)
T PRK06565 19 GRTTAVELVKAYLARIDAYDGPATGTALNAVVVRNPD-ALKEAEASDARRARGETLGPLDGIPYTAKDSYLVKGLTAASG 97 (566)
T ss_pred CCCCHHHHHHHHHHHHHHhCccccCcceEEEEecCHH-HHHHHHHHHHHHhcCCCCCCCCCCEEEEecccccCCCCcccc
Confidence 44899999999999999999 689999986554 444432 34567999999999999999999999999
Q ss_pred chhhhhcCCCCCCChHHHHHHHhCCCeEeeecccccccccCCCCCCCCCCCCCCCCCCC----CCCCCchHHHHHHHhcC
Q 007401 95 SPDWKRDHHEAERTAVVVTLLLKNGATCIGKTVLDEFAFGITGENKHYGTPVNPQMPSH----IPGGSSSGSAVAVAAQL 170 (605)
Q Consensus 95 s~~~~~~~~~~~~da~~V~rL~~aGai~~GKt~~~e~~~~~~~~n~~~G~~~NP~~~~~----~~GGSSgGsaaaVAag~ 170 (605)
|..|.+ .++.+||++|+|||+||||++||||||||+++.++ |.+||+|+||||+.+ +|||||||||++||+|+
T Consensus 98 s~~l~~--~~~~~DA~vV~rLr~AGAIilGKTnm~E~a~g~~~-~~~~G~t~NP~n~~~~~~~~pGGSSgGsAaAVAag~ 174 (566)
T PRK06565 98 SPAFKD--LVAQRDAFTIERLRAAGAICLGKTNMPPMANGGMQ-RGVYGRAESPYNAAYLTAPFASGSSNGAGTATAASF 174 (566)
T ss_pred cHhhcC--CCCCCCHHHHHHHHHCCCEEEEecccchhhhCCCC-CCCCCCcCCCcCcccCcCCCCCCCCccHHHHHhCCC
Confidence 999975 57889999999999999999999999999998876 679999999999999 59999999999999999
Q ss_pred CceeeccCCCCccchhhhhcccccccCCCCCccCCCCccCCCCCccccccccCHHHHHHHHHHHccCCCCC---------
Q 007401 171 VDFALGTDTIGCVRVPASFCGILGYRPSHGTVSMIGVLPNSQSLDTVGLLARNASILHRVGHVLLQLNAVE--------- 241 (605)
Q Consensus 171 ~~~a~GtD~gGSiR~PAa~~Gv~GlkPt~G~v~~~G~~p~~~~~d~~G~~ar~~~d~~~v~~~~~~~~~~~--------- 241 (605)
+++++|||||||||+||+||||||||||+|+||+.|++|+++++|++|||+|+++|++.+++++.+.+..+
T Consensus 175 ~~~alGtDtgGSIR~PAa~~GivG~KPT~G~vs~~Gv~p~~~s~D~vGp~aRsV~D~a~~l~vl~g~D~~d~~~~~~~~~ 254 (566)
T PRK06565 175 SAFGLAEETWSSGRGPASNNGLCAYTPSRGVISVRGNWPLTPTMDVVVPYARTMADLLEVLDVIVADDPDTRGDLWRLQP 254 (566)
T ss_pred CcceeecCCCCchhhhHHHcCeeEEeCCCCccCCCCcccccCCCCeecceeCCHHHHHHHHHHhcCCCcccccchhhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999988643211
Q ss_pred -----------------------cccCceeeeccchhhhcC------------------CchhhHHHHHHHHHHHHhCCC
Q 007401 242 -----------------------PRRARRLIFADDIFQLSK------------------VPKLKTIHVISKAIESLSGYQ 280 (605)
Q Consensus 242 -----------------------~~~~~~l~~~~~~~~~~~------------------~~~~~~~~~~~~a~~~l~g~~ 280 (605)
...+.|+.++..++.... ...+++.+.+.++++.|+..+
T Consensus 255 ~~~~p~~~~~~~~~y~~~~~~~~~l~g~RIGv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~a~~~L~~~G 334 (566)
T PRK06565 255 WVPIPKASEVRPASYLALAAGADALKGKRFGVPRMYINADPDAGTSENPGIGGPTGQRIHTRPSVIDLWEAARRALEAAG 334 (566)
T ss_pred cccCccccccCccchhhhhccccCCCCCEEEEEChhhccccccccccccccccccccccCCCHHHHHHHHHHHHHHHHCC
Confidence 012345555544331100 013578999999999997444
Q ss_pred C-CccccccccccccCcchhhhhhc-C---CCCCCchhHHHHH---------HHHHHHhhhhh--hHhhHHHHHHh--cC
Q 007401 281 N-PEHMNVGQYIASNVPSLKGLRAQ-S---TSPENGTATLKAL---------SSVMLSLQRYE--FKTIYEEWVKS--AK 342 (605)
Q Consensus 281 ~-~~~~~l~~~v~~~~p~~~~~~~~-~---~~~~~~~~~~~~~---------~~~~~~l~~~e--~~~~~~~~~~~--~~ 342 (605)
+ |+++++ |.+..+... + ..........+.. +..-..+.... -...+...... ..
T Consensus 335 a~vv~v~~--------p~~~~~e~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~yL~~~~~~~~~sl~di~~~~~~~ 406 (566)
T PRK06565 335 AEVIEVDF--------PLVSNCEGDRPGAPTVFNRGLVSPEFLHDELWELSGWAFDDFLRANGDPKLNRLADVDGPQIFP 406 (566)
T ss_pred CEEEEeec--------CCccccccccccccccccccccchhhhhccccchhHHHHHHHHHhcCCCCCCCHHHhhhhhccc
Confidence 3 112222 221110000 0 0000000000000 00000000000 00011111110 00
Q ss_pred --CCCChhHHH----H---HHH---HhcCC---HHHHHHHHHHHHHHHH-HHHHHhC--CCcEEEEeCCCCCCccCCccc
Q 007401 343 --PRLGYNVFE----R---VLE---AINTT---QDNIKILYKVRNEMRA-ALQRLLK--DDKILVIPTVSDPPLKLNTKK 404 (605)
Q Consensus 343 --~~~~~~~~~----~---~~~---~~~~s---~~~~~~a~~~r~~~~~-~~~~~~~--~~Dvll~Pt~~~~ap~~~~~~ 404 (605)
...-|.... . +.. ....+ ...|.+.++.++..++ .++++|. +.|+||.|+.+..+|..++..
T Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~e~~~~~~~lDalv~P~~~~~~~~~~~~~ 486 (566)
T PRK06565 407 HDPGTLPNREGDLAAGMDEYVNMAKRGLKSWDQIPTLPDGLRGLEKTRKLDLEDWMDGLGLDAVLFPTVADVGPADADVN 486 (566)
T ss_pred CcccccccchhhhhhhHHHHHHHhhcCCCChhhccchHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCcccccccc
Confidence 000011100 0 000 01111 2234455555555554 6777775 568999999999888776533
Q ss_pred ccch--hhhh-chhhhcccc-cccCCceeeeecccC--CCCCceeEEeeccCCchhHHhHHHHHHhHHH
Q 007401 405 TYSA--EFHD-RTLVLSSIG-SMSGCCQVAIPIGKY--NEHPISISFITYHGGDKFLLDTVLDLYDSLQ 467 (605)
Q Consensus 405 ~~~~--~~~~-~~~~~t~~~-nl~G~PaisvP~G~~--~glp~g~~~~~~~~~d~~ll~~a~~l~~~~~ 467 (605)
.... .|++ .+.+.+..+ +++|+|+||||+|+. .|+|+|+.|+++.++|..|+++|..+|+..+
T Consensus 487 ~~~~~~~~~~g~~~~ng~~a~~~~G~P~vtVP~G~~~~~G~PvGl~~~G~a~~e~~Ll~~A~a~E~~~~ 555 (566)
T PRK06565 487 PASADIAWSNGVWVANGNLAIRHLGVPTVTVPMGVMADIGMPVGLTFAGRAYDDNALLRFAAAFEATGS 555 (566)
T ss_pred chhhhhccccCcccccchhhHHhcCCCeeEeeccccCCCCCCeeEEeecCCcchHHHHHHHHHHHHHhc
Confidence 2211 1111 122333344 899999999999987 7999999999999999999999999987543
No 31
>KOG1211 consensus Amidases [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.2e-68 Score=544.94 Aligned_cols=415 Identities=30% Similarity=0.400 Sum_probs=295.0
Q ss_pred hhHHHHHHHHHhhcCcccCCCCcCceeeecccCCCCCC-------CCCCCCCCCCCceEEEeeccCCCCccc-CCCchhh
Q 007401 27 GFVVLAETLRRRRNPKLNGRVDFGAFLERFELIPFPQP-------PPPAARQPLAGLKFAIKDVFDVKGYVT-GFGSPDW 98 (605)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~a~~~a-------~~~~~~gpL~Gvp~~vKD~~~~~G~~t-t~Gs~~~ 98 (605)
+.+++.++++.+++++...++..+.+....++ ++.++ +.+...+||+||||+|||||+++|++| ||+|..+
T Consensus 30 ~~l~~~~~ie~~l~~~~~~~~~~~~i~~~~~~-~~~~a~~~~~~~~~~~~~~~L~Gv~i~IKDnf~tk~~~t~t~~S~~l 108 (506)
T KOG1211|consen 30 GLLTSKRIIESYLERINKWKPLNAKITVINEE-ALKQAEEVTRRRKNGMEKGPLQGVPIAIKDNFDTKDKPTTTAASWML 108 (506)
T ss_pred cccchHHHHHHHHHHHhhcccccceeeeccHH-HHHHhhhccccccCCCcCCCcCCceEEEeeceecCCccCCchhhhhh
Confidence 44788999999999999888776666655432 22222 245678999999999999999999999 7777776
Q ss_pred hhcCCCCCCChHHHHHHHhCCCeEeeecccccccccCCCCCCCCCCCCCCCCCCCCCCCCchHHHHHHHhcCCceeeccC
Q 007401 99 KRDHHEAERTAVVVTLLLKNGATCIGKTVLDEFAFGITGENKHYGTPVNPQMPSHIPGGSSSGSAVAVAAQLVDFALGTD 178 (605)
Q Consensus 99 ~~~~~~~~~da~~V~rL~~aGai~~GKt~~~e~~~~~~~~n~~~G~~~NP~~~~~~~GGSSgGsaaaVAag~~~~a~GtD 178 (605)
. ++.++.||++|++||++||+|+|||||+||+|+..++|.+||+|+|||++.+.|||||||||+|||+++|++|+|||
T Consensus 109 ~--~~~~p~dAtVV~~L~~aGaiilGKTnmdEfamg~~~~~s~~G~t~np~~~~~v~GGSS~GSA~aVaa~l~~~alGtD 186 (506)
T KOG1211|consen 109 E--HYNPPKDATVVKKLREAGAIILGKTNMDEFAMGSSGENSHYGTTRNPLSLWRVPGGSSSGSAAAVAAGLCDFALGTD 186 (506)
T ss_pred c--cCCCccccHHHHHHhhcCceEEccccHHHHhhccccccccCCccCCCCcccccCCCCcchhHHHHHhccchhhcccc
Confidence 5 46788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccchhhhhcccccccCCCCCccCCCCccCCCCCccccccccCHHHHHHHHHHHccCCCCC-----------------
Q 007401 179 TIGCVRVPASFCGILGYRPSHGTVSMIGVLPNSQSLDTVGLLARNASILHRVGHVLLQLNAVE----------------- 241 (605)
Q Consensus 179 ~gGSiR~PAa~~Gv~GlkPt~G~v~~~G~~p~~~~~d~~G~~ar~~~d~~~v~~~~~~~~~~~----------------- 241 (605)
||||+|+||++|||+|||||+|++|+.|++|++.|+|++|||||++.|...+..++.+.+..+
T Consensus 187 TgGSvR~PAa~~gvvG~KPT~G~~Sr~Gvip~~~SlD~vGi~a~tv~D~~~v~~~~~g~d~~d~~t~~~p~~~~~~~~~~ 266 (506)
T KOG1211|consen 187 TGGSVRVPAAYCGVVGFKPTYGRVSRFGVIPLSNSLDTVGIFARTVYDAVEVLGAIVGIDELDSTTLAQPAPFPIVLELI 266 (506)
T ss_pred CCCCccCcHHhcCccccccCcceecccccchhhhcccccchhhcccchhHHHhhhhcCCCccCcccccCCcccccchhhc
Confidence 999999999999999999999999999999999999999999999999999988876643211
Q ss_pred ---cccCceeeeccchhhhcCCchhhHHHHHHHHHHHHh--CCCCCccccccccccccCcchhhhhhcCCCCCCchhHHH
Q 007401 242 ---PRRARRLIFADDIFQLSKVPKLKTIHVISKAIESLS--GYQNPEHMNVGQYIASNVPSLKGLRAQSTSPENGTATLK 316 (605)
Q Consensus 242 ---~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~~l~--g~~~~~~~~l~~~v~~~~p~~~~~~~~~~~~~~~~~~~~ 316 (605)
...+.+++++..++... ....+.....+..++|. +..+ .. ..+|........+ ...
T Consensus 267 ~~~~l~~~r~GIp~~~~~~~--~~~~v~~~~~~~~~~l~~~~~~~-~~--------~~lp~~~~~~~~~--------~~~ 327 (506)
T KOG1211|consen 267 GSMDLSGLRIGIPKERLVQG--LSSGVLSLWEELADLLGSLGAKV-NE--------VSLPTTINGLCGY--------SLS 327 (506)
T ss_pred ccccccccccCceeeccccc--ccHHHHHHHHHHHHHhhcccccc-ee--------eecchhhhccccc--------ccc
Confidence 11223444554443221 12456666666665554 2221 11 1223322111110 000
Q ss_pred HHHHHHHHhhhhh---------hHhhHHHHHHhcC-CCCChhHHHHHHHHhc-----CCHHHHHHHHHHHHHHHHHHH--
Q 007401 317 ALSSVMLSLQRYE---------FKTIYEEWVKSAK-PRLGYNVFERVLEAIN-----TTQDNIKILYKVRNEMRAALQ-- 379 (605)
Q Consensus 317 ~~~~~~~~l~~~e---------~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-----~s~~~~~~a~~~r~~~~~~~~-- 379 (605)
...++...+.++. +....++++...+ ..++.++..++..+.. .....+.++.+.|+.....+.
T Consensus 328 s~~ea~s~laryd~~~~~~r~~~~~~~~~v~~~~rs~~~n~~v~~~i~~g~~~l~~~~~~~~f~~a~~~rr~i~~~~~~~ 407 (506)
T KOG1211|consen 328 SASEAASNLARYDGILYGHRRDFKVADEEVYALSRSFGFNFEVKGRILSGNYILAKENDQDYFEKALEVRRLIQEDFNRR 407 (506)
T ss_pred chhhhhhhHHHHHHHHhhcchhhhhccceeeeeccccccchhhcceeeccceehhhhhhHHHHHHHHHHHHHHHHhhhhc
Confidence 0111222222221 1111122222111 1233344444443322 223444677777777777776
Q ss_pred -HHhCCCcEEEEeCCCCCCccCCcccccchhhhhchhhhcccccccCCceeeeecccC-CCCCceeEEeeccCCchhHHh
Q 007401 380 -RLLKDDKILVIPTVSDPPLKLNTKKTYSAEFHDRTLVLSSIGSMSGCCQVAIPIGKY-NEHPISISFITYHGGDKFLLD 457 (605)
Q Consensus 380 -~~~~~~Dvll~Pt~~~~ap~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~G~~-~glp~g~~~~~~~~~d~~ll~ 457 (605)
..+++.|+|++||.|.+.+..-.. ............++.++|++|+|+++||+|.. +|+|+|+|+++..+.|..++.
T Consensus 408 ~~~~~~vD~l~~pt~~~~~~~~~~~-~~~~~~~~~~~~~~~~anlaGlP~isiP~G~~~~g~P~glqi~g~~~~e~~~~~ 486 (506)
T KOG1211|consen 408 KAALEGVDYLVTPTAPPPLYREFEK-ETLFAVSTLDDIFTQPANLAGLPAISIPVGLKNGGLPIGLQIMGGAFAEPTLID 486 (506)
T ss_pred ccccccCCeeeccCCCCcchhhhhh-cccccccccccceeecccccCCCceEEeeeecCCCCceEEEeecccccchHHHH
Confidence 688899999999943332222111 11111112233579999999999999999987 999999999999999999988
Q ss_pred HHHHHHh
Q 007401 458 TVLDLYD 464 (605)
Q Consensus 458 ~a~~l~~ 464 (605)
++..++.
T Consensus 487 l~~~~~~ 493 (506)
T KOG1211|consen 487 LALAIGQ 493 (506)
T ss_pred HHHhhcc
Confidence 8877655
No 32
>KOG1212 consensus Amidases [Translation, ribosomal structure and biogenesis; Lipid transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=2.1e-64 Score=518.53 Aligned_cols=425 Identities=20% Similarity=0.246 Sum_probs=301.8
Q ss_pred hHHHHHHHhhhh-----HHHHHHHHHhhcCcccCCCCcCceeeecccCCCCCCCC-------CCCCCCCCCceEEEeecc
Q 007401 17 VWVVIGVSVVGF-----VVLAETLRRRRNPKLNGRVDFGAFLERFELIPFPQPPP-------PAARQPLAGLKFAIKDVF 84 (605)
Q Consensus 17 ~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~a~~~a~~-------~~~~gpL~Gvp~~vKD~~ 84 (605)
+...|+++|++. +|++|++++|+.|+...|+.+||+++..++.+..+++. ....+||+||||+|||+|
T Consensus 52 il~~~~~~L~~~L~~~e~~~~~vl~Ay~~Ra~~vn~~lNcV~~~i~e~~~~~a~~~d~~~~~~~~k~PL~GvP~SvKe~~ 131 (560)
T KOG1212|consen 52 ILKLDATELAQALQSGELTSVEVLCAYCHRAIEVNQKLNCVVEFIFEAALQAAALDDEYTAPLYEKPPLYGVPFSVKESI 131 (560)
T ss_pred HhhcCHHHHHHHHHhCcCcHHHHHHHHHHHHHHhccCcceeeeehhhHHHHHhhchhhhhchhcccCCceecceehhhhe
Confidence 334489999955 99999999999999999999999999988877665542 225689999999999999
Q ss_pred CCCCcccCCCchhhhhcCCCCCCChHHHHHHHhCCCeEeeecccccccccCCCCCCCCCCCCCCCCCCCCCCCCchHHHH
Q 007401 85 DVKGYVTGFGSPDWKRDHHEAERTAVVVTLLLKNGATCIGKTVLDEFAFGITGENKHYGTPVNPQMPSHIPGGSSSGSAV 164 (605)
Q Consensus 85 ~~~G~~tt~Gs~~~~~~~~~~~~da~~V~rL~~aGai~~GKt~~~e~~~~~~~~n~~~G~~~NP~~~~~~~GGSSgGsaa 164 (605)
.++|+.+|.|..... ..++++|+.+|+.|+++|||++.+||+||.+++..+.|+.||+|.||||.+|||||||||+||
T Consensus 132 ~vkg~d~T~G~~~~~--~~~a~~ds~~V~~lk~~GaIpf~~TnvPq~~ls~~tsn~v~G~T~NP~d~~rt~GGSSGGEaA 209 (560)
T KOG1212|consen 132 SVKGYDSTAGLLART--NQPATTDSVIVEFLKKLGAIPFVLTNVPQSLLSYETSNPVYGTTKNPYDLSRTPGGSSGGEAA 209 (560)
T ss_pred eecCccccchhhhcc--CCCCccchHHHHHHHHcCCCceeecCCchhhhhhhhcCCCCCCCCChhhccCCCCCCchHHHH
Confidence 999999999987654 378999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCceeeccCCCCccchhhhhcccccccCCCCCccCCCCccCCC----CCccccccccCHHHHHHHHHHHccCCCC
Q 007401 165 AVAAQLVDFALGTDTIGCVRVPASFCGILGYRPSHGTVSMIGVLPNSQ----SLDTVGLLARNASILHRVGHVLLQLNAV 240 (605)
Q Consensus 165 aVAag~~~~a~GtD~gGSiR~PAa~~Gv~GlkPt~G~v~~~G~~p~~~----~~d~~G~~ar~~~d~~~v~~~~~~~~~~ 240 (605)
++++|.++||||||+||||||||+|||+||+|||.+|+|..|+.|... .+-.+|||+|+++|+..++..+.+....
T Consensus 210 LigaggS~lGiGsDigGSiRiPa~f~Gl~GlKPT~~r~~~~G~~~~~~g~~~~~~~~GPm~r~v~dl~~~L~~~i~~~~~ 289 (560)
T KOG1212|consen 210 LLGAGGSLLGIGSDIGGSIRIPAAFCGLFGLKPTPGRVSVKGHHPSVPGRETIMLVIGPMTRDVEDLVLLLRLMIGDSGP 289 (560)
T ss_pred HHhCCcceeccccccCCceeechhhccccccCCCCCeeeecCcCCCCCcccccccccCcccccHHHHHHHHHHhcCCccc
Confidence 999999999999999999999999999999999999999999877543 3468899999999999999887764321
Q ss_pred Cccc-----------------CceeeeccchhhhcCCchhhHHHHHHHHHHHHh--CCCCCccccccccccccCcchhhh
Q 007401 241 EPRR-----------------ARRLIFADDIFQLSKVPKLKTIHVISKAIESLS--GYQNPEHMNVGQYIASNVPSLKGL 301 (605)
Q Consensus 241 ~~~~-----------------~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~~l~--g~~~~~~~~l~~~v~~~~p~~~~~ 301 (605)
...+ +.++.+..+. ....+.+.+.+++....+.++ |+.++ ....|.++..
T Consensus 290 ~~~~p~~~p~~~~~~~y~~~~~~~ig~~~~d--g~~~~~pa~~RAv~~~~~~l~~~g~~~~---------~f~~~~~~~~ 358 (560)
T KOG1212|consen 290 KLLDPYPVPVKFMEVFYKSSDKLVIGYYVDD--GFFDPSPAMQRAVQETIDLLEKAGHEVV---------PFDLPDLKHV 358 (560)
T ss_pred cccCCCCCCchhhhhhhhccCCccceEEecC--CCCCcCHHHHHHHHHHHHHHHhcCccee---------EecCCcchHH
Confidence 1111 1122221111 112345667777777766554 44331 1122333211
Q ss_pred hhcCCCCCCchhHHHHHHHHHHHhhhhhhHhhHHHHHHhc--CCCCChhHHH-----------HHHHHhcCCHHHHHHHH
Q 007401 302 RAQSTSPENGTATLKALSSVMLSLQRYEFKTIYEEWVKSA--KPRLGYNVFE-----------RVLEAINTTQDNIKILY 368 (605)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~--~~~~~~~~~~-----------~~~~~~~~s~~~~~~a~ 368 (605)
.+.+..... ........... ...+....... -..+...... .+.........+.++.+
T Consensus 359 ~~~~~~~~~--~~~~~~~~~~~-------~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~ 429 (560)
T KOG1212|consen 359 ADMFFRVMP--DDGDYISEMYL-------LDIGDPTLNLFVKFVELPKVFLGRSLHSYIVLPFCIMDAKNSDTAELRQNY 429 (560)
T ss_pred HHHHHHHcc--cccchhhHHhh-------cccCccccchheeeeeccHHHHhhhhhhhHhHHHHHHhhcccchHHHHHHH
Confidence 111100000 00000000000 00000000000 0000000000 11222223334444555
Q ss_pred HHHHHHHHHHHH--HhCCCcEEEEeCCCCCCccCCcccccchhhhhchhhhcccccccCCceeeeeccc-----------
Q 007401 369 KVRNEMRAALQR--LLKDDKILVIPTVSDPPLKLNTKKTYSAEFHDRTLVLSSIGSMSGCCQVAIPIGK----------- 435 (605)
Q Consensus 369 ~~r~~~~~~~~~--~~~~~Dvll~Pt~~~~ap~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~G~----------- 435 (605)
..++.++..+.. ...+.||||+|+.|++||+|+..... ...+.||.+||++|+|+.+||++.
T Consensus 430 ~~~e~yrlk~~~~~~~~~~dVll~Ps~~~pA~~h~~P~~~-----~~~~~Yt~LfN~Ld~Pag~vpvt~v~~~d~~~~~~ 504 (560)
T KOG1212|consen 430 EDIESYRLKFILYWLLGKDDVLICPSFPTPAPPHNYPLLL-----VNGFSYTGLFNVLDFPAGVVPVTTVTQKDEKEEEY 504 (560)
T ss_pred HHHHHHHHHHHHHHHcCCCCEEEeCCCCCCCCcCCCchhh-----ccchhHHHHHHhccCCcccccccccchhhhccccc
Confidence 555555544444 45689999999999999999853211 134579999999999988888752
Q ss_pred ---------------C-CCCCceeEEeeccCCchhHHhHHHHHHhHHHH
Q 007401 436 ---------------Y-NEHPISISFITYHGGDKFLLDTVLDLYDSLQE 468 (605)
Q Consensus 436 ---------------~-~glp~g~~~~~~~~~d~~ll~~a~~l~~~~~e 468 (605)
. .|||+|+|+++.+++|+.+|++++.+|+.+..
T Consensus 505 ~~~D~~~~~~~~g~~~s~GlPigVQVVa~p~~delcL~va~~lE~~~gg 553 (560)
T KOG1212|consen 505 PMNDKWATKVPKGSLDSRGLPIGVQVVANPNQDELCLAVARELERKFGG 553 (560)
T ss_pred ccccHHHHhCcccccCCCCCceeEEEecCCCchHHHHHHHHHHHHHhCC
Confidence 2 68999999999999999999999999887643
No 33
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.71 E-value=8.1e-17 Score=152.86 Aligned_cols=120 Identities=40% Similarity=0.593 Sum_probs=115.1
Q ss_pred ChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 007401 485 SIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRG 564 (605)
Q Consensus 485 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la 564 (605)
....++.+...|+.+++.++|++|+..|.+||+++|.|+-+|.+++.+|.++|+|+.|+++++.|+++||.+.++|.++|
T Consensus 77 ~~~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG 156 (304)
T KOG0553|consen 77 DKALAESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLG 156 (304)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHH
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhh
Q 007401 565 TAREALFCYNEALQDFKHAMVLEPQNKAANLAEKRLRKLI 604 (605)
Q Consensus 565 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~ 604 (605)
.+|..+|++++|++.|+++|.++|+|..++..+..+..++
T Consensus 157 ~A~~~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l 196 (304)
T KOG0553|consen 157 LAYLALGKYEEAIEAYKKALELDPDNESYKSNLKIAEQKL 196 (304)
T ss_pred HHHHccCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999988877654
No 34
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.61 E-value=1.9e-14 Score=128.54 Aligned_cols=113 Identities=13% Similarity=0.119 Sum_probs=108.6
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcc
Q 007401 492 LKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREALF 571 (605)
Q Consensus 492 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 571 (605)
++.+|..+++.|+|++|+.+|++++..+|.+..+|.++|.++..+|++++|+..|+++++++|+++.+++++|.++..+|
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g 106 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMMG 106 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcC
Confidence 66789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhh
Q 007401 572 CYNEALQDFKHAMVLEPQNKAANLAEKRLRKLI 604 (605)
Q Consensus 572 ~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~ 604 (605)
++++|++.|++++++.|+++..+...+.++..+
T Consensus 107 ~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~l 139 (144)
T PRK15359 107 EPGLAREAFQTAIKMSYADASWSEIRQNAQIMV 139 (144)
T ss_pred CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Confidence 999999999999999999999998888876543
No 35
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.53 E-value=3.6e-13 Score=118.06 Aligned_cols=108 Identities=9% Similarity=0.000 Sum_probs=102.5
Q ss_pred hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 007401 486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGT 565 (605)
Q Consensus 486 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~ 565 (605)
++..+..+.+|..++..|++++|...|+-++.++|.++..|+++|.|+..+++|.+|+..|.+|+.++|+++.++++.|.
T Consensus 32 ~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~ 111 (157)
T PRK15363 32 TQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAE 111 (157)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHH
Confidence 56788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHccCHHHHHHHHHHHHHhCCCCHHH
Q 007401 566 AREALFCYNEALQDFKHAMVLEPQNKAA 593 (605)
Q Consensus 566 ~~~~~g~~~~A~~~~~~al~~~p~~~~~ 593 (605)
|++..|+.+.|.++|+.++....+++..
T Consensus 112 c~L~lG~~~~A~~aF~~Ai~~~~~~~~~ 139 (157)
T PRK15363 112 CYLACDNVCYAIKALKAVVRICGEVSEH 139 (157)
T ss_pred HHHHcCCHHHHHHHHHHHHHHhccChhH
Confidence 9999999999999999999997544433
No 36
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.48 E-value=1e-12 Score=133.59 Aligned_cols=119 Identities=41% Similarity=0.595 Sum_probs=113.7
Q ss_pred ChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 007401 485 SIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRG 564 (605)
Q Consensus 485 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la 564 (605)
+|+.+...+..|+.+|+.|+|.+|+..|.++|+.+|+++..|.|+|.||..++++..|+++++++++++|++..+|.+.|
T Consensus 354 ~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg 433 (539)
T KOG0548|consen 354 NPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKG 433 (539)
T ss_pred ChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHH
Confidence 45668888888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 007401 565 TAREALFCYNEALQDFKHAMVLEPQNKAANLAEKRLRKL 603 (605)
Q Consensus 565 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~ 603 (605)
.++..+.+|++|++.|+++++++|++..+...+.++...
T Consensus 434 ~al~~mk~ydkAleay~eale~dp~~~e~~~~~~rc~~a 472 (539)
T KOG0548|consen 434 AALRAMKEYDKALEAYQEALELDPSNAEAIDGYRRCVEA 472 (539)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999888764
No 37
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.47 E-value=1.2e-12 Score=135.06 Aligned_cols=115 Identities=34% Similarity=0.475 Sum_probs=109.4
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 007401 490 ELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREA 569 (605)
Q Consensus 490 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 569 (605)
..+...|+.++..|+|++|+++|++++.++|+++.+|+++|.+|+.++++++|+.+++++++++|+++.+|+++|.+|+.
T Consensus 3 ~~l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~ 82 (356)
T PLN03088 3 KDLEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMK 82 (356)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHH
Confidence 34778899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhh
Q 007401 570 LFCYNEALQDFKHAMVLEPQNKAANLAEKRLRKLI 604 (605)
Q Consensus 570 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~ 604 (605)
+|+|++|+..|+++++++|++..+...+..+...+
T Consensus 83 lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl 117 (356)
T PLN03088 83 LEEYQTAKAALEKGASLAPGDSRFTKLIKECDEKI 117 (356)
T ss_pred hCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999888886543
No 38
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.47 E-value=2e-12 Score=114.43 Aligned_cols=117 Identities=15% Similarity=0.186 Sum_probs=109.0
Q ss_pred ChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 007401 485 SIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRG 564 (605)
Q Consensus 485 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la 564 (605)
.|......+.+|..+++.|++++|++.|++++..+|++..++.++|.+++.++++++|+..++++++.+|.++..++++|
T Consensus 13 ~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la 92 (135)
T TIGR02552 13 DSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAA 92 (135)
T ss_pred ChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHH
Confidence 45667889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 007401 565 TAREALFCYNEALQDFKHAMVLEPQNKAANLAEKRLR 601 (605)
Q Consensus 565 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 601 (605)
.++...|++++|++.|+++++++|++.........+.
T Consensus 93 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 129 (135)
T TIGR02552 93 ECLLALGEPESALKALDLAIEICGENPEYSELKERAE 129 (135)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHH
Confidence 9999999999999999999999999988665555443
No 39
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.45 E-value=3.6e-13 Score=138.04 Aligned_cols=121 Identities=21% Similarity=0.228 Sum_probs=106.2
Q ss_pred ChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 007401 485 SIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRG 564 (605)
Q Consensus 485 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la 564 (605)
.|+..++|+++|+.|...+.|++|+.+|.+++.+.|+++.++.|+|.+|+.+|..+-|+..|++|++++|+++.+|+++|
T Consensus 248 dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~Nla 327 (966)
T KOG4626|consen 248 DPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLA 327 (966)
T ss_pred CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHH
Confidence 46778889999999998999999999999999988998888889998888889998999999999999998888999999
Q ss_pred HHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhhC
Q 007401 565 TAREALFCYNEALQDFKHAMVLEPQNKAANLAEKRLRKLIG 605 (605)
Q Consensus 565 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g 605 (605)
.++...|+..+|..+|.++|.+.|+.+.+..+++.++..+|
T Consensus 328 nALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~ 368 (966)
T KOG4626|consen 328 NALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQG 368 (966)
T ss_pred HHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhc
Confidence 98888899999999999999998888888888888877654
No 40
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.43 E-value=2.7e-12 Score=120.84 Aligned_cols=114 Identities=19% Similarity=0.236 Sum_probs=104.4
Q ss_pred ChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HHcCC--HHHHHHHHHHHHhcCCCCHHHHH
Q 007401 485 SIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAY-LELGC--FQQAEEDCSKTISLDKKNVKAYL 561 (605)
Q Consensus 485 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~-~~~~~--~~~A~~~~~~al~~~p~~~~~~~ 561 (605)
+|++.+.|..+|..+...|++++|+..|+++++++|+++.++.++|.++ ...|+ +++|.+.++++++++|+++.+++
T Consensus 69 ~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~ 148 (198)
T PRK10370 69 NPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALM 148 (198)
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHH
Confidence 4677899999999999999999999999999999999999999999985 67777 59999999999999999999999
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 007401 562 RRGTAREALFCYNEALQDFKHAMVLEPQNKAANLAEK 598 (605)
Q Consensus 562 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 598 (605)
++|.++++.|++++|+.+|+++++++|.+..-...+.
T Consensus 149 ~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~r~~~i~ 185 (198)
T PRK10370 149 LLASDAFMQADYAQAIELWQKVLDLNSPRVNRTQLVE 185 (198)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHH
Confidence 9999999999999999999999999987754444433
No 41
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.40 E-value=2.1e-12 Score=132.49 Aligned_cols=120 Identities=16% Similarity=0.153 Sum_probs=77.4
Q ss_pred ChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 007401 485 SIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRG 564 (605)
Q Consensus 485 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la 564 (605)
.++.++.++++|+++..+|++++|...|.++++..|+.+.+..|+|.+|.++|++++|+.+|+.+++++|..++++.++|
T Consensus 350 ~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmG 429 (966)
T KOG4626|consen 350 CPNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMG 429 (966)
T ss_pred CCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcc
Confidence 44556666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhh
Q 007401 565 TAREALFCYNEALQDFKHAMVLEPQNKAANLAEKRLRKLI 604 (605)
Q Consensus 565 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~ 604 (605)
..|..+|+...|+++|.+++..+|...+++.+++.+++..
T Consensus 430 nt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDs 469 (966)
T KOG4626|consen 430 NTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDS 469 (966)
T ss_pred hHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhcc
Confidence 6666666666666666666666666666666666665543
No 42
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.38 E-value=1.3e-11 Score=124.39 Aligned_cols=107 Identities=24% Similarity=0.176 Sum_probs=103.6
Q ss_pred hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 007401 486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGT 565 (605)
Q Consensus 486 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~ 565 (605)
...++.|+++|..+...|++++|+..|+++++++|+++.+|+++|.++..+|++++|++.|+++++++|++..+|+++|.
T Consensus 61 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~ 140 (296)
T PRK11189 61 EERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGI 140 (296)
T ss_pred HhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 35688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHccCHHHHHHHHHHHHHhCCCCHH
Q 007401 566 AREALFCYNEALQDFKHAMVLEPQNKA 592 (605)
Q Consensus 566 ~~~~~g~~~~A~~~~~~al~~~p~~~~ 592 (605)
++...|++++|++.|+++++++|+++.
T Consensus 141 ~l~~~g~~~eA~~~~~~al~~~P~~~~ 167 (296)
T PRK11189 141 ALYYGGRYELAQDDLLAFYQDDPNDPY 167 (296)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCHH
Confidence 999999999999999999999999974
No 43
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.35 E-value=1.2e-12 Score=136.37 Aligned_cols=123 Identities=19% Similarity=0.199 Sum_probs=111.0
Q ss_pred CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHH
Q 007401 483 NGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLR 562 (605)
Q Consensus 483 ~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 562 (605)
...+...+.|+..|+++..+++++.|+++|++|++++|.++.+|..+|.=+...++|++|..+|++|+..+|++..+||-
T Consensus 415 ~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYG 494 (638)
T KOG1126|consen 415 DTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYG 494 (638)
T ss_pred hhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHh
Confidence 33566788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhhC
Q 007401 563 RGTAREALFCYNEALQDFKHAMVLEPQNKAANLAEKRLRKLIG 605 (605)
Q Consensus 563 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g 605 (605)
+|.+|.++++++.|+-.|++|++++|.+......++.++.++|
T Consensus 495 lG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k 537 (638)
T KOG1126|consen 495 LGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLK 537 (638)
T ss_pred hhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhh
Confidence 9999999999999999999999999999888888888877654
No 44
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.35 E-value=1.5e-11 Score=122.01 Aligned_cols=117 Identities=38% Similarity=0.512 Sum_probs=105.7
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 007401 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTS---------------ATYYSNRAAAYLELGCFQQAEEDCSKTIS 551 (605)
Q Consensus 487 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---------------~~~~~~la~~~~~~~~~~~A~~~~~~al~ 551 (605)
..+....+.|+.+|+.|+|..|+..|++++..-... ..++.|++.||.++++|.+|+..+++++.
T Consensus 206 ~~A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe 285 (397)
T KOG0543|consen 206 EAADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLE 285 (397)
T ss_pred HHHHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHh
Confidence 346667788999999999999999999998753211 35789999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 007401 552 LDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAANLAEKRLRKL 603 (605)
Q Consensus 552 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~ 603 (605)
++|+|.+++|++|.++..+|+|+.|...|+++++++|+|..+...+..+.++
T Consensus 286 ~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k 337 (397)
T KOG0543|consen 286 LDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQK 337 (397)
T ss_pred cCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999988887665
No 45
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.31 E-value=5e-11 Score=133.13 Aligned_cols=119 Identities=18% Similarity=0.166 Sum_probs=89.6
Q ss_pred hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 007401 486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGT 565 (605)
Q Consensus 486 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~ 565 (605)
|.....|+.+|.++...|++++|+..|+++++.+|+++.+++.+|.+++.+|++++|+.+|+++++++|++..+++++|.
T Consensus 362 P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~ 441 (615)
T TIGR00990 362 PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGV 441 (615)
T ss_pred CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHH
Confidence 44566777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhh
Q 007401 566 AREALFCYNEALQDFKHAMVLEPQNKAANLAEKRLRKLI 604 (605)
Q Consensus 566 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~ 604 (605)
++.++|++++|+..|+++++.+|+++..+..++.++...
T Consensus 442 ~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~ 480 (615)
T TIGR00990 442 TQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQ 480 (615)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHc
Confidence 777777777777777777777777777777777666544
No 46
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.29 E-value=6.3e-11 Score=132.32 Aligned_cols=121 Identities=21% Similarity=0.247 Sum_probs=115.6
Q ss_pred ChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 007401 485 SIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRG 564 (605)
Q Consensus 485 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la 564 (605)
.+..+..|..+|..++.+|++++|+..|+++++++|++...|..+|.++..+|++++|+.+|+++++++|+++.+|+.+|
T Consensus 327 ~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg 406 (615)
T TIGR00990 327 GEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRA 406 (615)
T ss_pred ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 46778899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhhC
Q 007401 565 TAREALFCYNEALQDFKHAMVLEPQNKAANLAEKRLRKLIG 605 (605)
Q Consensus 565 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g 605 (605)
.+++.+|++++|+.+|+++++++|++...+..++.++..+|
T Consensus 407 ~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g 447 (615)
T TIGR00990 407 QLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEG 447 (615)
T ss_pred HHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCC
Confidence 99999999999999999999999999999998888876654
No 47
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.28 E-value=9.5e-11 Score=107.53 Aligned_cols=124 Identities=16% Similarity=0.058 Sum_probs=110.3
Q ss_pred CCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHH
Q 007401 481 DTNGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISL--DKKNVK 558 (605)
Q Consensus 481 ~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~ 558 (605)
.+...|+....|..++..|.+.|+.+.|-+.|++|++++|++.++++|.|..+...|+|++|...|++|+.. .+.-+.
T Consensus 61 AL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~ 140 (250)
T COG3063 61 ALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSD 140 (250)
T ss_pred HHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcch
Confidence 345567788899999999999999999999999999999999999999999999999999999999999864 355678
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhh
Q 007401 559 AYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAANLAEKRLRKLI 604 (605)
Q Consensus 559 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~ 604 (605)
.|-|+|.|..+.|+.++|.++|+++++++|+++.....+...+...
T Consensus 141 t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~ 186 (250)
T COG3063 141 TLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKA 186 (250)
T ss_pred hhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhc
Confidence 9999999999999999999999999999999998888887766543
No 48
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=99.26 E-value=1.9e-11 Score=117.36 Aligned_cols=110 Identities=43% Similarity=0.594 Sum_probs=104.9
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcc
Q 007401 492 LKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREALF 571 (605)
Q Consensus 492 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 571 (605)
+.+.|+.||++|+|++|+.||.+++..+|.|+-.+.|++.+|+++..|..|..+|..|+.+|-.+.++|.+++.+-+.+|
T Consensus 100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg 179 (536)
T KOG4648|consen 100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLG 179 (536)
T ss_pred HHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence 67889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 007401 572 CYNEALQDFKHAMVLEPQNKAANLAEKRLR 601 (605)
Q Consensus 572 ~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 601 (605)
...+|.+.++.+|+++|++.+.....+.+.
T Consensus 180 ~~~EAKkD~E~vL~LEP~~~ELkK~~a~i~ 209 (536)
T KOG4648|consen 180 NNMEAKKDCETVLALEPKNIELKKSLARIN 209 (536)
T ss_pred hHHHHHHhHHHHHhhCcccHHHHHHHHHhc
Confidence 999999999999999999988877766653
No 49
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=99.26 E-value=1.4e-10 Score=99.95 Aligned_cols=109 Identities=18% Similarity=0.180 Sum_probs=100.6
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---HHHHHH
Q 007401 489 SELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTS---ATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKN---VKAYLR 562 (605)
Q Consensus 489 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~ 562 (605)
.+.++..|..++++|++++|++.|++++..+|++ ..+++.+|.+++..+++++|++.|++++..+|++ +.+++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 81 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK 81 (119)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence 4578999999999999999999999999999876 6789999999999999999999999999999885 678999
Q ss_pred HHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 007401 563 RGTAREALFCYNEALQDFKHAMVLEPQNKAANLAE 597 (605)
Q Consensus 563 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 597 (605)
+|.++.++|++++|...++++++..|++..+....
T Consensus 82 ~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~ 116 (119)
T TIGR02795 82 LGMSLQELGDKEKAKATLQQVIKRYPGSSAAKLAQ 116 (119)
T ss_pred HHHHHHHhCChHHHHHHHHHHHHHCcCChhHHHHH
Confidence 99999999999999999999999999998766554
No 50
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.24 E-value=1.3e-10 Score=103.79 Aligned_cols=115 Identities=38% Similarity=0.557 Sum_probs=107.1
Q ss_pred hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHH
Q 007401 486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTS-----ATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAY 560 (605)
Q Consensus 486 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 560 (605)
...+..+...|+.+|+.|+|++|...|..||.+.|.. +-+|.++|.++++++.+..|+.++.++|+++|.+-+++
T Consensus 92 ~~kad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl 171 (271)
T KOG4234|consen 92 IEKADSLKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKAL 171 (271)
T ss_pred HHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHH
Confidence 4568889999999999999999999999999999875 45788999999999999999999999999999999999
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 007401 561 LRRGTAREALFCYNEALQDFKHAMVLEPQNKAANLAEKRL 600 (605)
Q Consensus 561 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 600 (605)
.++|.+|.++..|++|++.|.+.+.++|....+...+.++
T Consensus 172 ~RRAeayek~ek~eealeDyKki~E~dPs~~ear~~i~rl 211 (271)
T KOG4234|consen 172 ERRAEAYEKMEKYEEALEDYKKILESDPSRREAREAIARL 211 (271)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHhCcchHHHHHHHHhc
Confidence 9999999999999999999999999999998887776655
No 51
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.24 E-value=1.6e-10 Score=115.52 Aligned_cols=153 Identities=16% Similarity=0.138 Sum_probs=129.7
Q ss_pred CCCceeEEeeccCCchhHHhHHHHHHhHHHHHHhhhccCCCCCCCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q 007401 438 EHPISISFITYHGGDKFLLDTVLDLYDSLQEQVNIASNLVPLPDTNGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIK 517 (605)
Q Consensus 438 glp~g~~~~~~~~~d~~ll~~a~~l~~~~~e~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~ 517 (605)
-.|-...+++.-++ +....++++....... .-+|....+|..+|-.|+..++-..|++.|++|++
T Consensus 328 yR~ETCCiIaNYYS----------lr~eHEKAv~YFkRAL-----kLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvd 392 (559)
T KOG1155|consen 328 YRPETCCIIANYYS----------LRSEHEKAVMYFKRAL-----KLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVD 392 (559)
T ss_pred CCccceeeehhHHH----------HHHhHHHHHHHHHHHH-----hcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHh
Confidence 35666777665432 2233334444333322 22567788999999999999999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 007401 518 LNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAANLAE 597 (605)
Q Consensus 518 ~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 597 (605)
++|.+..+|+.+|+.|..++-..=|+-+|++|+++.|+++..|..+|.||.++++.++|++||.+++.....+..++..+
T Consensus 393 i~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~L 472 (559)
T KOG1155|consen 393 INPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRL 472 (559)
T ss_pred cCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988888999999
Q ss_pred HHHHHhhC
Q 007401 598 KRLRKLIG 605 (605)
Q Consensus 598 ~~~~~~~g 605 (605)
+.++++++
T Consensus 473 akLye~l~ 480 (559)
T KOG1155|consen 473 AKLYEELK 480 (559)
T ss_pred HHHHHHHH
Confidence 99988763
No 52
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.24 E-value=8.1e-11 Score=122.82 Aligned_cols=123 Identities=20% Similarity=0.161 Sum_probs=118.8
Q ss_pred CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHH
Q 007401 483 NGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLR 562 (605)
Q Consensus 483 ~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 562 (605)
.-.+++-.+|+-+|.+|.++++++.|.-.|++|++++|.+......+|..+.++++.++|+..|++|+.+||.|+-..|.
T Consensus 483 ~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~ 562 (638)
T KOG1126|consen 483 GVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYH 562 (638)
T ss_pred cCCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHH
Confidence 34678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhhC
Q 007401 563 RGTAREALFCYNEALQDFKHAMVLEPQNKAANLAEKRLRKLIG 605 (605)
Q Consensus 563 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g 605 (605)
+|.+++.+++|++|+..+++.-++-|++..++..+++++.++|
T Consensus 563 ~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~ 605 (638)
T KOG1126|consen 563 RASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLG 605 (638)
T ss_pred HHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHc
Confidence 9999999999999999999999999999999999999998875
No 53
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=99.23 E-value=3.2e-10 Score=109.18 Aligned_cols=133 Identities=19% Similarity=0.137 Sum_probs=115.3
Q ss_pred CchhHHhHHHHHHhHHHHHHhhhccCCCCCCCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 007401 451 GDKFLLDTVLDLYDSLQEQVNIASNLVPLPDTNGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRA 530 (605)
Q Consensus 451 ~d~~ll~~a~~l~~~~~e~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 530 (605)
.+..+-++...++.++++ +|++++.|..+|.+|+.+|++..|...|.+++++.|+|++.+..+|
T Consensus 134 ~~~~~~~l~a~Le~~L~~----------------nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~a 197 (287)
T COG4235 134 AEQEMEALIARLETHLQQ----------------NPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLA 197 (287)
T ss_pred CcccHHHHHHHHHHHHHh----------------CCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 344455555555555544 6788999999999999999999999999999999999999999999
Q ss_pred HHHHHcCC---HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 007401 531 AAYLELGC---FQQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAANLAEKR 599 (605)
Q Consensus 531 ~~~~~~~~---~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~ 599 (605)
.+++...+ ..++...+++++++||.|..+.+.+|..+++.|+|.+|...+++.++..|.+......+..
T Consensus 198 eaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~~ie~ 269 (287)
T COG4235 198 EALYYQAGQQMTAKARALLRQALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDPRRSLIER 269 (287)
T ss_pred HHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCchHHHHHH
Confidence 99987653 7899999999999999999999999999999999999999999999999987655554444
No 54
>PRK12370 invasion protein regulator; Provisional
Probab=99.21 E-value=2.3e-10 Score=125.66 Aligned_cols=121 Identities=12% Similarity=0.001 Sum_probs=104.6
Q ss_pred ChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 007401 485 SIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRG 564 (605)
Q Consensus 485 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la 564 (605)
.|+....|..+|..+...|++++|+..|+++++++|+++.+++.+|.++...|++++|+..++++++++|.++..++.++
T Consensus 334 dP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~ 413 (553)
T PRK12370 334 DHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKL 413 (553)
T ss_pred CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHH
Confidence 35667888889999999999999999999999999999999999999999999999999999999999999888777777
Q ss_pred HHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhhC
Q 007401 565 TAREALFCYNEALQDFKHAMVLE-PQNKAANLAEKRLRKLIG 605 (605)
Q Consensus 565 ~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g 605 (605)
.+++..|++++|+..++++++.. |+++.++..++.++..+|
T Consensus 414 ~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G 455 (553)
T PRK12370 414 WITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKG 455 (553)
T ss_pred HHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCC
Confidence 77888899999999999988775 777888888887776554
No 55
>PRK15331 chaperone protein SicA; Provisional
Probab=99.19 E-value=4.6e-10 Score=98.99 Aligned_cols=115 Identities=13% Similarity=0.066 Sum_probs=105.7
Q ss_pred ChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 007401 485 SIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRG 564 (605)
Q Consensus 485 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la 564 (605)
..+..+..+..|-.++.+|+|++|...|+-+...++.+++.+..+|.|+..+++|++|+..|..|..++++++...+..|
T Consensus 33 s~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~ag 112 (165)
T PRK15331 33 PQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTG 112 (165)
T ss_pred CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHH
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 007401 565 TAREALFCYNEALQDFKHAMVLEPQNKAANLAEKRL 600 (605)
Q Consensus 565 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 600 (605)
.||+.+|+.++|..+|+.++. .|.+..........
T Consensus 113 qC~l~l~~~~~A~~~f~~a~~-~~~~~~l~~~A~~~ 147 (165)
T PRK15331 113 QCQLLMRKAAKARQCFELVNE-RTEDESLRAKALVY 147 (165)
T ss_pred HHHHHhCCHHHHHHHHHHHHh-CcchHHHHHHHHHH
Confidence 999999999999999999998 57766655544443
No 56
>PRK12370 invasion protein regulator; Provisional
Probab=99.19 E-value=2e-10 Score=126.06 Aligned_cols=115 Identities=13% Similarity=-0.008 Sum_probs=102.9
Q ss_pred ChHHHHHHHHHHHHHHH---------CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 007401 485 SIDASELLKEKGNAAFK---------GKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKK 555 (605)
Q Consensus 485 ~~~~a~~~~~~g~~~~~---------~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~ 555 (605)
.|+.+..|..+|.++.. .+++++|+..++++++++|+++.++..+|.++...+++++|+..|+++++++|+
T Consensus 291 dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~ 370 (553)
T PRK12370 291 SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPI 370 (553)
T ss_pred CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 35557778888877653 345899999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 007401 556 NVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAANLAEKR 599 (605)
Q Consensus 556 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~ 599 (605)
++.+|+++|.++...|++++|+..++++++++|.+..+......
T Consensus 371 ~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~ 414 (553)
T PRK12370 371 SADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLW 414 (553)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHH
Confidence 99999999999999999999999999999999998766544443
No 57
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.18 E-value=1.7e-10 Score=115.88 Aligned_cols=116 Identities=40% Similarity=0.617 Sum_probs=99.1
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 007401 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTA 566 (605)
Q Consensus 487 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~ 566 (605)
..+..+.+.|+.+|+.|+|++||++|.++|.+.|+.+..|.|++.||..+|++++.++++.++++++|++.+++++++.+
T Consensus 113 k~A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A 192 (606)
T KOG0547|consen 113 KYAAALKTKGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASA 192 (606)
T ss_pred HHHHHHHhhhhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHH
Confidence 44777889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHH
Q 007401 567 REALFCYNEALQDFKHAMVLEP-QNKAANLAEKRLRK 602 (605)
Q Consensus 567 ~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~ 602 (605)
+..+|++++|+....-..-++. +|........+++.
T Consensus 193 ~E~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lk 229 (606)
T KOG0547|consen 193 HEQLGKFDEALFDVTVLCILEGFQNASIEPMAERVLK 229 (606)
T ss_pred HHhhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHH
Confidence 9999999999988763332222 33444444444443
No 58
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.18 E-value=3.6e-10 Score=124.79 Aligned_cols=120 Identities=7% Similarity=-0.047 Sum_probs=73.1
Q ss_pred hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 007401 486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGT 565 (605)
Q Consensus 486 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~ 565 (605)
+..++.++.+|....+.|+|++|...++.++++.|++..++.+++.++.+++++++|+..+++++..+|+++.+++.+|.
T Consensus 83 ~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~ 162 (694)
T PRK15179 83 PHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAK 162 (694)
T ss_pred cccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHH
Confidence 34455566666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhhC
Q 007401 566 AREALFCYNEALQDFKHAMVLEPQNKAANLAEKRLRKLIG 605 (605)
Q Consensus 566 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g 605 (605)
++.++|+|++|...|++++..+|+++.++..++.++...|
T Consensus 163 ~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G 202 (694)
T PRK15179 163 SWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRG 202 (694)
T ss_pred HHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC
Confidence 6666666666666666666655665666666555555443
No 59
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.18 E-value=1.5e-10 Score=118.07 Aligned_cols=112 Identities=37% Similarity=0.522 Sum_probs=107.5
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 007401 490 ELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREA 569 (605)
Q Consensus 490 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 569 (605)
..+...|+..|..|+|+.|+.+|.++|.++|.|...|.|+..+|..+++|++|+++-.+.++++|.+++.|.++|.+++.
T Consensus 3 ~e~k~kgnaa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~ 82 (539)
T KOG0548|consen 3 VELKEKGNAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFG 82 (539)
T ss_pred hHHHHHHHhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHh
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 007401 570 LFCYNEALQDFKHAMVLEPQNKAANLAEKRLR 601 (605)
Q Consensus 570 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 601 (605)
+|+|++|+..|.+.|+.+|+|...+..+..++
T Consensus 83 lg~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~ 114 (539)
T KOG0548|consen 83 LGDYEEAILAYSEGLEKDPSNKQLKTGLAQAY 114 (539)
T ss_pred cccHHHHHHHHHHHhhcCCchHHHHHhHHHhh
Confidence 99999999999999999999999988887765
No 60
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=99.17 E-value=8.8e-10 Score=101.86 Aligned_cols=110 Identities=21% Similarity=0.234 Sum_probs=100.5
Q ss_pred CCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH
Q 007401 482 TNGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTS---ATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVK 558 (605)
Q Consensus 482 ~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~ 558 (605)
....+..+..++.+|..+...|++++|+.+|+++++..|+. ..++.++|.++..+|++++|+..++++++.+|++..
T Consensus 28 ~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 107 (172)
T PRK02603 28 INKKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPS 107 (172)
T ss_pred cccHhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHH
Confidence 34466788899999999999999999999999999887653 578999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHccC--------------HHHHHHHHHHHHHhCCCCH
Q 007401 559 AYLRRGTAREALFC--------------YNEALQDFKHAMVLEPQNK 591 (605)
Q Consensus 559 ~~~~la~~~~~~g~--------------~~~A~~~~~~al~~~p~~~ 591 (605)
.+..+|.++...|+ +++|++++++++.++|++.
T Consensus 108 ~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~~ 154 (172)
T PRK02603 108 ALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNNY 154 (172)
T ss_pred HHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchhH
Confidence 99999999999888 6889999999999999884
No 61
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.17 E-value=4.1e-10 Score=129.12 Aligned_cols=114 Identities=9% Similarity=-0.021 Sum_probs=106.4
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 007401 489 SELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTARE 568 (605)
Q Consensus 489 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 568 (605)
...+..+|.++.+.|++++|+..|++++.++|+++.++.++|.++.+.|++++|++.|+++++++|+++.+++++|.++.
T Consensus 609 ~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~ 688 (987)
T PRK09782 609 ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQ 688 (987)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 67889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 007401 569 ALFCYNEALQDFKHAMVLEPQNKAANLAEKRLRK 602 (605)
Q Consensus 569 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 602 (605)
.+|++++|+.+|+++++++|++..+....+.+..
T Consensus 689 ~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~ 722 (987)
T PRK09782 689 RLDDMAATQHYARLVIDDIDNQALITPLTPEQNQ 722 (987)
T ss_pred HCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHH
Confidence 9999999999999999999999888877776654
No 62
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.16 E-value=5.7e-10 Score=105.13 Aligned_cols=104 Identities=12% Similarity=0.059 Sum_probs=97.7
Q ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH-HHccC--HHHHHH
Q 007401 502 GKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAR-EALFC--YNEALQ 578 (605)
Q Consensus 502 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~-~~~g~--~~~A~~ 578 (605)
.++.++++..|+++++.+|++.+.|..+|.+|..+|++++|+..|+++++++|+++.+++.+|.++ ...|+ +++|.+
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~ 131 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTRE 131 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHH
Confidence 678899999999999999999999999999999999999999999999999999999999999985 77787 599999
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHhhC
Q 007401 579 DFKHAMVLEPQNKAANLAEKRLRKLIG 605 (605)
Q Consensus 579 ~~~~al~~~p~~~~~~~~~~~~~~~~g 605 (605)
.++++++++|++..++..++..+...|
T Consensus 132 ~l~~al~~dP~~~~al~~LA~~~~~~g 158 (198)
T PRK10370 132 MIDKALALDANEVTALMLLASDAFMQA 158 (198)
T ss_pred HHHHHHHhCCCChhHHHHHHHHHHHcC
Confidence 999999999999999999998877654
No 63
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.16 E-value=1.3e-10 Score=89.61 Aligned_cols=66 Identities=36% Similarity=0.531 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHhCC
Q 007401 523 ATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREALF-CYNEALQDFKHAMVLEP 588 (605)
Q Consensus 523 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p 588 (605)
+..|..+|.+++.+++|++|+.+|+++++++|+++.+|+++|.++..+| ++++|+++++++++++|
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 4444555555555555555555555555555555555555555555554 35555555555555444
No 64
>PLN02789 farnesyltranstransferase
Probab=99.16 E-value=4.7e-10 Score=113.13 Aligned_cols=121 Identities=14% Similarity=0.051 Sum_probs=112.6
Q ss_pred CCChHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH--HHHHHHHHHHHhcCCCCHHH
Q 007401 483 NGSIDASELLKEKGNAAFKGK-QWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCF--QQAEEDCSKTISLDKKNVKA 559 (605)
Q Consensus 483 ~~~~~~a~~~~~~g~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~--~~A~~~~~~al~~~p~~~~~ 559 (605)
..+|.....|..++.++...+ ++++++..++++++.+|++..+|+.++.++..+++. ++++++++++++.+|+|..+
T Consensus 65 ~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpkNy~A 144 (320)
T PLN02789 65 RLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAKNYHA 144 (320)
T ss_pred HHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcccHHH
Confidence 346788899999999999998 689999999999999999999999999999998874 78899999999999999999
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 007401 560 YLRRGTAREALFCYNEALQDFKHAMVLEPQNKAANLAEKRLRKL 603 (605)
Q Consensus 560 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~ 603 (605)
|.+++.++..+|++++|+++++++++.+|.|..++.+.+.+...
T Consensus 145 W~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~ 188 (320)
T PLN02789 145 WSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITR 188 (320)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999887654
No 65
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.16 E-value=1.9e-10 Score=113.47 Aligned_cols=111 Identities=34% Similarity=0.552 Sum_probs=103.4
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 007401 479 LPDTNGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTS----ATYYSNRAAAYLELGCFQQAEEDCSKTISLDK 554 (605)
Q Consensus 479 ~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p 554 (605)
.......+.....|.+.|+.+++.|+|.+|.++|.++|.++|++ +.+|.+++.+...+|+..+|+.+++.++++|+
T Consensus 239 sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~ 318 (486)
T KOG0550|consen 239 SKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDS 318 (486)
T ss_pred HHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCH
Confidence 33444567888999999999999999999999999999999985 77899999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Q 007401 555 KNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQ 589 (605)
Q Consensus 555 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 589 (605)
...+++..+|.|+..++++++|+++|+++++...+
T Consensus 319 syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s 353 (486)
T KOG0550|consen 319 SYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKD 353 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 99999999999999999999999999999998765
No 66
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.15 E-value=1.3e-10 Score=89.68 Aligned_cols=67 Identities=31% Similarity=0.550 Sum_probs=64.9
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhcCC
Q 007401 488 ASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELG-CFQQAEEDCSKTISLDK 554 (605)
Q Consensus 488 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~-~~~~A~~~~~~al~~~p 554 (605)
.+..|..+|..++..|+|++|+.+|+++++++|+++.+++++|.+|+.++ ++.+|+++++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 47889999999999999999999999999999999999999999999999 79999999999999998
No 67
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=99.15 E-value=4.8e-10 Score=91.17 Aligned_cols=99 Identities=38% Similarity=0.588 Sum_probs=94.8
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Q 007401 491 LLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREAL 570 (605)
Q Consensus 491 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 570 (605)
.++.+|..++..|++++|+..++++++..|++..++..+|.++...+++++|++.++++++..|.+...++.++.++...
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence 47889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCHHHHHHHHHHHHHhCCC
Q 007401 571 FCYNEALQDFKHAMVLEPQ 589 (605)
Q Consensus 571 g~~~~A~~~~~~al~~~p~ 589 (605)
|++++|...++++++.+|+
T Consensus 82 ~~~~~a~~~~~~~~~~~~~ 100 (100)
T cd00189 82 GKYEEALEAYEKALELDPN 100 (100)
T ss_pred HhHHHHHHHHHHHHccCCC
Confidence 9999999999999988773
No 68
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.14 E-value=3.4e-10 Score=101.06 Aligned_cols=94 Identities=15% Similarity=0.151 Sum_probs=88.6
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Q 007401 509 VNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEP 588 (605)
Q Consensus 509 ~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 588 (605)
...|+++++++|++ ++.+|.++.++|++++|+..|++++.++|.+..+|+.+|.++..+|++++|+.+|+++++++|
T Consensus 13 ~~~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p 89 (144)
T PRK15359 13 EDILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDA 89 (144)
T ss_pred HHHHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 46789999999885 668999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhhC
Q 007401 589 QNKAANLAEKRLRKLIG 605 (605)
Q Consensus 589 ~~~~~~~~~~~~~~~~g 605 (605)
+++.++..++.++..+|
T Consensus 90 ~~~~a~~~lg~~l~~~g 106 (144)
T PRK15359 90 SHPEPVYQTGVCLKMMG 106 (144)
T ss_pred CCcHHHHHHHHHHHHcC
Confidence 99999999999988765
No 69
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.14 E-value=1.2e-09 Score=110.30 Aligned_cols=114 Identities=18% Similarity=0.133 Sum_probs=81.9
Q ss_pred hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH--------
Q 007401 486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNV-------- 557 (605)
Q Consensus 486 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~-------- 557 (605)
|+....|+.+|..+...|++++|++.|+++++++|++..++.++|.+++..|++++|+++++++++++|+++
T Consensus 95 P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~l 174 (296)
T PRK11189 95 PDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYRALWLYL 174 (296)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 455677777787788888888888888888887887777777888777777777777777777777666442
Q ss_pred --------------------------------------------------------------HHHHHHHHHHHHccCHHH
Q 007401 558 --------------------------------------------------------------KAYLRRGTAREALFCYNE 575 (605)
Q Consensus 558 --------------------------------------------------------------~~~~~la~~~~~~g~~~~ 575 (605)
.+|+++|.++.++|++++
T Consensus 175 ~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~ 254 (296)
T PRK11189 175 AESKLDPKQAKENLKQRYEKLDKEQWGWNIVEFYLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDE 254 (296)
T ss_pred HHccCCHHHHHHHHHHHHhhCCccccHHHHHHHHccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHH
Confidence 346667777777777777
Q ss_pred HHHHHHHHHHhCC-CCHHHHHHHHH
Q 007401 576 ALQDFKHAMVLEP-QNKAANLAEKR 599 (605)
Q Consensus 576 A~~~~~~al~~~p-~~~~~~~~~~~ 599 (605)
|+.+|+++++.+| +.......+.+
T Consensus 255 A~~~~~~Al~~~~~~~~e~~~~~~e 279 (296)
T PRK11189 255 AAALFKLALANNVYNFVEHRYALLE 279 (296)
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHH
Confidence 7777777777775 44444444443
No 70
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.14 E-value=1.1e-09 Score=102.74 Aligned_cols=119 Identities=17% Similarity=0.127 Sum_probs=109.3
Q ss_pred hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 007401 486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGT 565 (605)
Q Consensus 486 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~ 565 (605)
+.+...+..+|..++..|+|.+|+..+.++..+.|+++++|..+|.+|.+.|++++|...|.+++++.|+++.+..|+|.
T Consensus 97 ~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgm 176 (257)
T COG5010 97 PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGM 176 (257)
T ss_pred cccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHH
Confidence 34455566689999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhh
Q 007401 566 AREALFCYNEALQDFKHAMVLEPQNKAANLAEKRLRKLI 604 (605)
Q Consensus 566 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~ 604 (605)
.|.-.|+++.|...+..+....+.+..+..++..+....
T Consensus 177 s~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~ 215 (257)
T COG5010 177 SLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQ 215 (257)
T ss_pred HHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhc
Confidence 999999999999999999998888988888888776544
No 71
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.13 E-value=2e-09 Score=103.83 Aligned_cols=121 Identities=17% Similarity=0.138 Sum_probs=109.7
Q ss_pred ChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCCHHHHHH
Q 007401 485 SIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLD--KKNVKAYLR 562 (605)
Q Consensus 485 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~ 562 (605)
.|.....+..+|..+...|++++|++.|+++++..|++...+.++|.++...|++++|++.++++++.. +.....++.
T Consensus 61 ~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 140 (234)
T TIGR02521 61 DPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLEN 140 (234)
T ss_pred CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHH
Confidence 455678899999999999999999999999999999999999999999999999999999999999864 456778999
Q ss_pred HHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhhC
Q 007401 563 RGTAREALFCYNEALQDFKHAMVLEPQNKAANLAEKRLRKLIG 605 (605)
Q Consensus 563 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g 605 (605)
+|.++...|++++|.+.|+++++.+|++...+..++.++...|
T Consensus 141 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~ 183 (234)
T TIGR02521 141 AGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRG 183 (234)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcC
Confidence 9999999999999999999999999999988888888876543
No 72
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.13 E-value=1.1e-10 Score=116.99 Aligned_cols=120 Identities=18% Similarity=0.180 Sum_probs=105.9
Q ss_pred hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 007401 486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGT 565 (605)
Q Consensus 486 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~ 565 (605)
+.....|..+|.++.+.|++++|++.|+++++.+|++..+...++.++...|+++++.+.++...+..|.++..|..+|.
T Consensus 143 ~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~ 222 (280)
T PF13429_consen 143 PDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAA 222 (280)
T ss_dssp -T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 35688999999999999999999999999999999999999999999999999999999999988888889999999999
Q ss_pred HHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhhC
Q 007401 566 AREALFCYNEALQDFKHAMVLEPQNKAANLAEKRLRKLIG 605 (605)
Q Consensus 566 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g 605 (605)
++..+|++++|+.+|+++++.+|+|+.++..++.++...|
T Consensus 223 ~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g 262 (280)
T PF13429_consen 223 AYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAG 262 (280)
T ss_dssp HHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT---
T ss_pred Hhcccccccccccccccccccccccccccccccccccccc
Confidence 9999999999999999999999999999999999887665
No 73
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.12 E-value=7.6e-10 Score=111.38 Aligned_cols=118 Identities=30% Similarity=0.323 Sum_probs=103.1
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 007401 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTA 566 (605)
Q Consensus 487 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~ 566 (605)
..+..+...|..++..|++..|.+.++++|+++|.+...|..|+..|++.++-.+-.++|++|..+||+|+..||.+|++
T Consensus 324 ~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm 403 (606)
T KOG0547|consen 324 YMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQM 403 (606)
T ss_pred HHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHH
Confidence 34778888899999999999999999999999998888899999999999999999999999999999999999999999
Q ss_pred HHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhh
Q 007401 567 REALFCYNEALQDFKHAMVLEPQNKAANLAEKRLRKLI 604 (605)
Q Consensus 567 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~ 604 (605)
++-+++|++|+..|++++.++|++..++.+++-++.+.
T Consensus 404 ~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~ 441 (606)
T KOG0547|consen 404 RFLLQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQ 441 (606)
T ss_pred HHHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHH
Confidence 99999999999999999999999888888877765543
No 74
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.11 E-value=2.3e-09 Score=103.35 Aligned_cols=119 Identities=15% Similarity=0.180 Sum_probs=107.3
Q ss_pred hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 007401 486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLN--GTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRR 563 (605)
Q Consensus 486 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 563 (605)
+.....+..+|..++..|++++|++.|++++... +.....+.++|.++...|++++|.+.++++++.+|++...++.+
T Consensus 96 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l 175 (234)
T TIGR02521 96 PNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLEL 175 (234)
T ss_pred CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHH
Confidence 4456788999999999999999999999999853 55678899999999999999999999999999999999999999
Q ss_pred HHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhh
Q 007401 564 GTAREALFCYNEALQDFKHAMVLEPQNKAANLAEKRLRKLI 604 (605)
Q Consensus 564 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~ 604 (605)
+.++...|++++|...++++++..|.+...+.....++...
T Consensus 176 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (234)
T TIGR02521 176 AELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARAL 216 (234)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999888888887777766554
No 75
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.10 E-value=6.6e-10 Score=111.16 Aligned_cols=117 Identities=21% Similarity=0.236 Sum_probs=111.8
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 007401 489 SELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTARE 568 (605)
Q Consensus 489 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 568 (605)
.+..+-.|+.|...++.++|+.+|+++++++|....+|..+|.=|+.+.+...|++.|++|++++|.+-.+||-+|++|.
T Consensus 330 ~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYe 409 (559)
T KOG1155|consen 330 PETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYE 409 (559)
T ss_pred ccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHH
Confidence 44566789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhhC
Q 007401 569 ALFCYNEALQDFKHAMVLEPQNKAANLAEKRLRKLIG 605 (605)
Q Consensus 569 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g 605 (605)
-++-..=|+-+|++|+++.|+|...+..++.|+.+++
T Consensus 410 im~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~ 446 (559)
T KOG1155|consen 410 IMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLN 446 (559)
T ss_pred HhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999998764
No 76
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.10 E-value=1.8e-09 Score=123.99 Aligned_cols=116 Identities=16% Similarity=0.055 Sum_probs=106.6
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 007401 489 SELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTARE 568 (605)
Q Consensus 489 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 568 (605)
...+..++..+...|++++|+..|+++++.+|+ ..++.++|.++.++|++++|+..|+++++++|+++.+++++|.++.
T Consensus 576 ~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~ 654 (987)
T PRK09782 576 NALYWWLHAQRYIPGQPELALNDLTRSLNIAPS-ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALW 654 (987)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 344445566666779999999999999999997 9999999999999999999999999999999999999999999999
Q ss_pred HccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhhC
Q 007401 569 ALFCYNEALQDFKHAMVLEPQNKAANLAEKRLRKLIG 605 (605)
Q Consensus 569 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g 605 (605)
..|++++|++.|+++++++|++..++..++.++..+|
T Consensus 655 ~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lG 691 (987)
T PRK09782 655 DSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLD 691 (987)
T ss_pred HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC
Confidence 9999999999999999999999999999999988765
No 77
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.08 E-value=8.1e-10 Score=113.70 Aligned_cols=103 Identities=14% Similarity=0.199 Sum_probs=99.3
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 007401 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTA 566 (605)
Q Consensus 487 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~ 566 (605)
.+++.+..+|..|...|+|++|+.+|+.||..+|++...|+.+|..+..-.+..+|++.|++|+++.|.+..++|++|.+
T Consensus 428 ~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS 507 (579)
T KOG1125|consen 428 IDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGIS 507 (579)
T ss_pred CChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhh
Confidence 45788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHccCHHHHHHHHHHHHHhCCC
Q 007401 567 REALFCYNEALQDFKHAMVLEPQ 589 (605)
Q Consensus 567 ~~~~g~~~~A~~~~~~al~~~p~ 589 (605)
+..+|.|++|.++|-.+|.+.++
T Consensus 508 ~mNlG~ykEA~~hlL~AL~mq~k 530 (579)
T KOG1125|consen 508 CMNLGAYKEAVKHLLEALSMQRK 530 (579)
T ss_pred hhhhhhHHHHHHHHHHHHHhhhc
Confidence 99999999999999999998765
No 78
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.06 E-value=2.7e-09 Score=119.27 Aligned_cols=118 Identities=14% Similarity=0.074 Sum_probs=81.2
Q ss_pred hHHHHHHHHHHHHHHHCCCHHH----HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHH
Q 007401 486 IDASELLKEKGNAAFKGKQWNK----AVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYL 561 (605)
Q Consensus 486 ~~~a~~~~~~g~~~~~~g~~~~----A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 561 (605)
|.....+..+|..+...|++++ |+..|+++++++|++..++.++|.++...|++++|+..++++++++|+++.+++
T Consensus 243 p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~ 322 (656)
T PRK15174 243 LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRA 322 (656)
T ss_pred CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 3445666667777777777764 677777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 007401 562 RRGTAREALFCYNEALQDFKHAMVLEPQNKAANLAEKRLRKL 603 (605)
Q Consensus 562 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~ 603 (605)
++|.++.+.|++++|++.|+++++.+|++...+...+.++..
T Consensus 323 ~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~ 364 (656)
T PRK15174 323 MYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQ 364 (656)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHH
Confidence 777777777777777777777777777665555444444433
No 79
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=99.06 E-value=4.9e-10 Score=90.13 Aligned_cols=82 Identities=26% Similarity=0.395 Sum_probs=74.2
Q ss_pred HCCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHH
Q 007401 501 KGKQWNKAVNYYSEAIKLNGT--SATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEALQ 578 (605)
Q Consensus 501 ~~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 578 (605)
.+|+|++|+..|+++++..|. +...++.+|.||++.|+|++|+..+++ .+.++.+...++.+|.|++++|+|++|++
T Consensus 1 ~~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 1 DQGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp HTT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CCccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 368999999999999999995 567788899999999999999999999 88899899999999999999999999999
Q ss_pred HHHHH
Q 007401 579 DFKHA 583 (605)
Q Consensus 579 ~~~~a 583 (605)
.|+++
T Consensus 80 ~l~~~ 84 (84)
T PF12895_consen 80 ALEKA 84 (84)
T ss_dssp HHHHH
T ss_pred HHhcC
Confidence 99875
No 80
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.03 E-value=4.3e-09 Score=102.69 Aligned_cols=112 Identities=21% Similarity=0.229 Sum_probs=102.3
Q ss_pred CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH-
Q 007401 483 NGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSA---TYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVK- 558 (605)
Q Consensus 483 ~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~- 558 (605)
+.....++.++.+|..+++.|+|++|+..|++++..+|+++ .+++.+|.+|+..+++++|+..|+++++.+|+++.
T Consensus 27 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~ 106 (235)
T TIGR03302 27 PVEEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDA 106 (235)
T ss_pred CcccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCch
Confidence 34456788999999999999999999999999999999876 57899999999999999999999999999998876
Q ss_pred --HHHHHHHHHHHc--------cCHHHHHHHHHHHHHhCCCCHHHH
Q 007401 559 --AYLRRGTAREAL--------FCYNEALQDFKHAMVLEPQNKAAN 594 (605)
Q Consensus 559 --~~~~la~~~~~~--------g~~~~A~~~~~~al~~~p~~~~~~ 594 (605)
+++.+|.++... |++++|++.|+++++.+|++....
T Consensus 107 ~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 152 (235)
T TIGR03302 107 DYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAP 152 (235)
T ss_pred HHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHH
Confidence 799999999987 889999999999999999987654
No 81
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=99.03 E-value=1.1e-08 Score=94.14 Aligned_cols=107 Identities=17% Similarity=0.084 Sum_probs=94.5
Q ss_pred ChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHH
Q 007401 485 SIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGT---SATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYL 561 (605)
Q Consensus 485 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 561 (605)
....+..|+.+|..+...|+|++|+..|++++.+.++ .+.++.++|.++..+|++++|+..|+++++++|.+...+.
T Consensus 31 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~ 110 (168)
T CHL00033 31 GEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALN 110 (168)
T ss_pred hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHH
Confidence 4457889999999999999999999999999988765 3568999999999999999999999999999999999999
Q ss_pred HHHHHHH-------HccCHH-------HHHHHHHHHHHhCCCCH
Q 007401 562 RRGTARE-------ALFCYN-------EALQDFKHAMVLEPQNK 591 (605)
Q Consensus 562 ~la~~~~-------~~g~~~-------~A~~~~~~al~~~p~~~ 591 (605)
++|.++. .+|+++ +|+..|++++..+|.+.
T Consensus 111 ~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~ 154 (168)
T CHL00033 111 NMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNY 154 (168)
T ss_pred HHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccH
Confidence 9999998 777766 66777777888888664
No 82
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.03 E-value=5.2e-09 Score=102.09 Aligned_cols=122 Identities=16% Similarity=0.058 Sum_probs=106.0
Q ss_pred CChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHc--------CCHHHHHHHHHHHHhc
Q 007401 484 GSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSAT---YYSNRAAAYLEL--------GCFQQAEEDCSKTISL 552 (605)
Q Consensus 484 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~---~~~~la~~~~~~--------~~~~~A~~~~~~al~~ 552 (605)
..+...+.++.+|..+++.|++++|+..|+++++..|++.. +++.+|.++++. +++++|++.|+++++.
T Consensus 65 ~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 144 (235)
T TIGR03302 65 FSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR 144 (235)
T ss_pred CchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH
Confidence 34455678999999999999999999999999999998766 799999999887 7899999999999999
Q ss_pred CCCCHHHH-----------------HHHHHHHHHccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHhhC
Q 007401 553 DKKNVKAY-----------------LRRGTAREALFCYNEALQDFKHAMVLEPQN---KAANLAEKRLRKLIG 605 (605)
Q Consensus 553 ~p~~~~~~-----------------~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~~~~~~~~~g 605 (605)
+|++..++ +.+|..++..|++++|+..|+++++..|++ ..++..++.++..+|
T Consensus 145 ~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg 217 (235)
T TIGR03302 145 YPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLG 217 (235)
T ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcC
Confidence 99986542 467889999999999999999999998765 578888888887664
No 83
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=99.03 E-value=8.2e-09 Score=101.07 Aligned_cols=112 Identities=14% Similarity=0.043 Sum_probs=99.9
Q ss_pred HHHHHHHHHHH-HHCCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---HHHHH
Q 007401 489 SELLKEKGNAA-FKGKQWNKAVNYYSEAIKLNGTS---ATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKN---VKAYL 561 (605)
Q Consensus 489 a~~~~~~g~~~-~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~ 561 (605)
...++..+..+ ++.|+|++|+..|++.++.+|++ +.+++.+|.+|+..++|++|+..|+++++.+|++ +++++
T Consensus 142 e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~ 221 (263)
T PRK10803 142 ANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMF 221 (263)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHH
Confidence 34566667766 66899999999999999999998 5899999999999999999999999999998874 67999
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 007401 562 RRGTAREALFCYNEALQDFKHAMVLEPQNKAANLAEKRL 600 (605)
Q Consensus 562 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 600 (605)
.+|.++..+|++++|.+.|+++++..|+...+.....++
T Consensus 222 klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a~~A~~rL 260 (263)
T PRK10803 222 KVGVIMQDKGDTAKAKAVYQQVIKKYPGTDGAKQAQKRL 260 (263)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHHHHH
Confidence 999999999999999999999999999998776665554
No 84
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.02 E-value=3.5e-09 Score=97.41 Aligned_cols=122 Identities=19% Similarity=0.153 Sum_probs=109.2
Q ss_pred CChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHH
Q 007401 484 GSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKL--NGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYL 561 (605)
Q Consensus 484 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 561 (605)
..|+..+.+++.|..++.+|+|++|...|++|+.. .+.-+..|.|+|.|.++.|++++|.++|+++++++|+++....
T Consensus 98 l~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l 177 (250)
T COG3063 98 LAPNNGDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALL 177 (250)
T ss_pred cCCCccchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHH
Confidence 35778999999999999999999999999999983 3456889999999999999999999999999999999999999
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhhC
Q 007401 562 RRGTAREALFCYNEALQDFKHAMVLEPQNKAANLAEKRLRKLIG 605 (605)
Q Consensus 562 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g 605 (605)
.++..++..|+|-.|...+++...--+-....+....++.+.+|
T Consensus 178 ~~a~~~~~~~~y~~Ar~~~~~~~~~~~~~A~sL~L~iriak~~g 221 (250)
T COG3063 178 ELARLHYKAGDYAPARLYLERYQQRGGAQAESLLLGIRIAKRLG 221 (250)
T ss_pred HHHHHHHhcccchHHHHHHHHHHhcccccHHHHHHHHHHHHHhc
Confidence 99999999999999999999998887777777766666665544
No 85
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.01 E-value=7.7e-09 Score=111.47 Aligned_cols=131 Identities=20% Similarity=0.210 Sum_probs=97.0
Q ss_pred hhHHhHHHHHHhH--HHHHHhhhccCCCCCCCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 007401 453 KFLLDTVLDLYDS--LQEQVNIASNLVPLPDTNGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRA 530 (605)
Q Consensus 453 ~~ll~~a~~l~~~--~~e~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 530 (605)
..++..|..+... +.++.+.. .+.+...|.....|+.+|.+|.++|+.++++...-.|-.++|++.+.|..++
T Consensus 140 ~~ll~eAN~lfarg~~eeA~~i~-----~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~la 214 (895)
T KOG2076|consen 140 RQLLGEANNLFARGDLEEAEEIL-----MEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLA 214 (895)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHH-----HHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHH
Confidence 3455555554443 22333333 3344556677778888888888888888888888888888888888888888
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Q 007401 531 AAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEP 588 (605)
Q Consensus 531 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 588 (605)
....++|++.+|.-+|.+||+++|.+.+..+.++..|.++|++..|+..|.++++++|
T Consensus 215 dls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p 272 (895)
T KOG2076|consen 215 DLSEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDP 272 (895)
T ss_pred HHHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCC
Confidence 8888888888888888888888888888888888888888888888888888888877
No 86
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.99 E-value=4.6e-09 Score=92.79 Aligned_cols=96 Identities=16% Similarity=0.191 Sum_probs=91.3
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Q 007401 510 NYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQ 589 (605)
Q Consensus 510 ~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 589 (605)
+.|++++..+|++....+.+|.++++.+++++|++.+++++.++|.++.+|+++|.++..+|++++|..+|+++++.+|+
T Consensus 4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~ 83 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPD 83 (135)
T ss_pred hhHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 46889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhhC
Q 007401 590 NKAANLAEKRLRKLIG 605 (605)
Q Consensus 590 ~~~~~~~~~~~~~~~g 605 (605)
+...+..++.++...|
T Consensus 84 ~~~~~~~la~~~~~~g 99 (135)
T TIGR02552 84 DPRPYFHAAECLLALG 99 (135)
T ss_pred ChHHHHHHHHHHHHcC
Confidence 9999999998887654
No 87
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.99 E-value=8.7e-09 Score=104.56 Aligned_cols=117 Identities=15% Similarity=0.087 Sum_probs=76.2
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 007401 489 SELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTARE 568 (605)
Q Consensus 489 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 568 (605)
...++-.+..++..|++++|...++..++..|+|+.++..++++++..++..+|.+.+++++.++|+.+..++++|.+|.
T Consensus 306 ~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all 385 (484)
T COG4783 306 LAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALL 385 (484)
T ss_pred hHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHH
Confidence 44556666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhhC
Q 007401 569 ALFCYNEALQDFKHAMVLEPQNKAANLAEKRLRKLIG 605 (605)
Q Consensus 569 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g 605 (605)
+.|++++|+..++..+..+|+|+..|..+++.+..+|
T Consensus 386 ~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g 422 (484)
T COG4783 386 KGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELG 422 (484)
T ss_pred hcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhC
Confidence 6666666666666666666666666666666665543
No 88
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=98.99 E-value=8.7e-09 Score=115.27 Aligned_cols=115 Identities=13% Similarity=0.092 Sum_probs=108.0
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH----HHHHHHHHHhcCCCCHHHHHHHHHH
Q 007401 491 LLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQ----AEEDCSKTISLDKKNVKAYLRRGTA 566 (605)
Q Consensus 491 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~----A~~~~~~al~~~p~~~~~~~~la~~ 566 (605)
.+..++..+.+.|++++|+..|++++..+|+++.+++++|.++...|++++ |+..|+++++++|+++.++.++|.+
T Consensus 214 ~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~ 293 (656)
T PRK15174 214 SAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADA 293 (656)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Confidence 335668889999999999999999999999999999999999999999986 8999999999999999999999999
Q ss_pred HHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhhC
Q 007401 567 REALFCYNEALQDFKHAMVLEPQNKAANLAEKRLRKLIG 605 (605)
Q Consensus 567 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g 605 (605)
+...|++++|+..++++++++|++..++..++.++...|
T Consensus 294 l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G 332 (656)
T PRK15174 294 LIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVG 332 (656)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC
Confidence 999999999999999999999999999999998887654
No 89
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.98 E-value=1.8e-09 Score=82.08 Aligned_cols=62 Identities=15% Similarity=0.284 Sum_probs=29.7
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 007401 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKN 556 (605)
Q Consensus 495 ~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~ 556 (605)
+|..+++.|+|++|++.|+++++.+|++..+++.+|.+++.+|++++|+..|+++++++|++
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~ 64 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDN 64 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 34444444455555555555544444444445555555544445555544444444444444
No 90
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.98 E-value=3.9e-09 Score=101.80 Aligned_cols=109 Identities=24% Similarity=0.251 Sum_probs=104.6
Q ss_pred ChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 007401 485 SIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRG 564 (605)
Q Consensus 485 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la 564 (605)
.+.+++.+.++|..++..|++.+|+..|..+++.+|++..+++.+|.+|+.+|+-..|+.++.+.+++.|++..+...+|
T Consensus 34 ~~advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg 113 (504)
T KOG0624|consen 34 SPADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRG 113 (504)
T ss_pred CHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhc
Confidence 56889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHccCHHHHHHHHHHHHHhCCCCHHH
Q 007401 565 TAREALFCYNEALQDFKHAMVLEPQNKAA 593 (605)
Q Consensus 565 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 593 (605)
.++.++|++++|...|++.++.+|++...
T Consensus 114 ~vllK~Gele~A~~DF~~vl~~~~s~~~~ 142 (504)
T KOG0624|consen 114 VVLLKQGELEQAEADFDQVLQHEPSNGLV 142 (504)
T ss_pred hhhhhcccHHHHHHHHHHHHhcCCCcchh
Confidence 99999999999999999999999966433
No 91
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.97 E-value=2.6e-09 Score=81.21 Aligned_cols=65 Identities=25% Similarity=0.310 Sum_probs=60.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH
Q 007401 527 SNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNK 591 (605)
Q Consensus 527 ~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 591 (605)
+.+|..+++.|+|++|++.|+++++.+|+++.+|+.+|.++..+|++++|+..|+++++.+|+++
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 46899999999999999999999999999999999999999999999999999999999999975
No 92
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.96 E-value=1.2e-08 Score=112.81 Aligned_cols=109 Identities=11% Similarity=-0.049 Sum_probs=104.0
Q ss_pred ChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 007401 485 SIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRG 564 (605)
Q Consensus 485 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la 564 (605)
.|...+++..++..+.+++++++|+..+++++..+|+++..++.+|.++.++|+|++|+..|+++++.+|+++.++..+|
T Consensus 116 ~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a 195 (694)
T PRK15179 116 FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWA 195 (694)
T ss_pred CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHccCHHHHHHHHHHHHHhCCCCHHH
Q 007401 565 TAREALFCYNEALQDFKHAMVLEPQNKAA 593 (605)
Q Consensus 565 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 593 (605)
.++...|+.++|...|+++++....-...
T Consensus 196 ~~l~~~G~~~~A~~~~~~a~~~~~~~~~~ 224 (694)
T PRK15179 196 QSLTRRGALWRARDVLQAGLDAIGDGARK 224 (694)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhhCcchHH
Confidence 99999999999999999999997665544
No 93
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=98.95 E-value=1.2e-08 Score=121.74 Aligned_cols=117 Identities=23% Similarity=0.228 Sum_probs=105.9
Q ss_pred ChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH--------------HHHHHHHHHHHcCCHHHHHHHHHHHH
Q 007401 485 SIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSAT--------------YYSNRAAAYLELGCFQQAEEDCSKTI 550 (605)
Q Consensus 485 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~--------------~~~~la~~~~~~~~~~~A~~~~~~al 550 (605)
.|+....+..+|.+++++|++++|+.+|+++++.+|++.. .+..+|.++...+++++|++.|++++
T Consensus 299 ~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al 378 (1157)
T PRK11447 299 NPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQAR 378 (1157)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 4556889999999999999999999999999999997642 23456889999999999999999999
Q ss_pred hcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 007401 551 SLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAANLAEKRLR 601 (605)
Q Consensus 551 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 601 (605)
+++|+++.+++.+|.++...|++++|++.|+++++++|++..++..+..++
T Consensus 379 ~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~ 429 (1157)
T PRK11447 379 QVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLY 429 (1157)
T ss_pred HhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999998887777665
No 94
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=98.93 E-value=3.8e-08 Score=103.72 Aligned_cols=100 Identities=15% Similarity=0.058 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHH
Q 007401 491 LLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKN-VKAYLRRGTAREA 569 (605)
Q Consensus 491 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~ 569 (605)
.+..+|..+.+.|++++|+..|+++++.+|++..+++.+|.+|.+.|++++|++.++++++.+|.+ ..++..++.+|..
T Consensus 182 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~ 261 (389)
T PRK11788 182 FYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQA 261 (389)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHH
Confidence 344455555555555555555555555555555555555555555555555555555555555443 2344445555555
Q ss_pred ccCHHHHHHHHHHHHHhCCCC
Q 007401 570 LFCYNEALQDFKHAMVLEPQN 590 (605)
Q Consensus 570 ~g~~~~A~~~~~~al~~~p~~ 590 (605)
.|++++|...++++++.+|+.
T Consensus 262 ~g~~~~A~~~l~~~~~~~p~~ 282 (389)
T PRK11788 262 LGDEAEGLEFLRRALEEYPGA 282 (389)
T ss_pred cCCHHHHHHHHHHHHHhCCCc
Confidence 555555555555555555544
No 95
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.93 E-value=9e-09 Score=90.56 Aligned_cols=91 Identities=14% Similarity=0.082 Sum_probs=85.7
Q ss_pred HHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHH
Q 007401 515 AIKLN-GTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAA 593 (605)
Q Consensus 515 al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 593 (605)
+..+. ++.-+..+.+|..+++.|++++|.+.|+.+..+||.+...|+++|.|+..+|+|++|+.+|.+++.++|+++..
T Consensus 26 l~~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~ 105 (157)
T PRK15363 26 LLDDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQA 105 (157)
T ss_pred HHCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchH
Confidence 34566 77888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhC
Q 007401 594 NLAEKRLRKLIG 605 (605)
Q Consensus 594 ~~~~~~~~~~~g 605 (605)
+.+.+.++..+|
T Consensus 106 ~~~ag~c~L~lG 117 (157)
T PRK15363 106 PWAAAECYLACD 117 (157)
T ss_pred HHHHHHHHHHcC
Confidence 999999988765
No 96
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=98.93 E-value=2e-08 Score=114.62 Aligned_cols=117 Identities=13% Similarity=0.100 Sum_probs=110.3
Q ss_pred hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 007401 486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGT 565 (605)
Q Consensus 486 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~ 565 (605)
+..+..+..+|..+...|++++|++.|+++++.+|+++.++..++.++...+++++|+..++++++.+|+++. ++.+|.
T Consensus 46 ~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~ 124 (765)
T PRK10049 46 QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAY 124 (765)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHH
Confidence 3457779999999999999999999999999999999999999999999999999999999999999999999 999999
Q ss_pred HHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 007401 566 AREALFCYNEALQDFKHAMVLEPQNKAANLAEKRLRKL 603 (605)
Q Consensus 566 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~ 603 (605)
++...|++++|+..++++++++|++..++..++.++..
T Consensus 125 ~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~ 162 (765)
T PRK10049 125 VYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRN 162 (765)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999998888776653
No 97
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=98.92 E-value=3.2e-09 Score=97.70 Aligned_cols=101 Identities=38% Similarity=0.543 Sum_probs=96.6
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 007401 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTA 566 (605)
Q Consensus 487 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~ 566 (605)
..+..+.+.|+.+|...+|+.|+.+|.++|.++|..+..|.+++.||+++++++.+..+++++++++|+..+++|.+|.+
T Consensus 8 ~~a~qlkE~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~ 87 (284)
T KOG4642|consen 8 ESAEQLKEQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQW 87 (284)
T ss_pred hHHHHHHhccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHH
Confidence 45677889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHccCHHHHHHHHHHHHHhC
Q 007401 567 REALFCYNEALQDFKHAMVLE 587 (605)
Q Consensus 567 ~~~~g~~~~A~~~~~~al~~~ 587 (605)
+.+...|++|+..++++..+.
T Consensus 88 ~l~s~~~~eaI~~Lqra~sl~ 108 (284)
T KOG4642|consen 88 LLQSKGYDEAIKVLQRAYSLL 108 (284)
T ss_pred HHhhccccHHHHHHHHHHHHH
Confidence 999999999999999997664
No 98
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.92 E-value=3.1e-08 Score=85.65 Aligned_cols=109 Identities=18% Similarity=0.179 Sum_probs=99.6
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH---HHHHH
Q 007401 489 SELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTS---ATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNV---KAYLR 562 (605)
Q Consensus 489 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~ 562 (605)
...++..|...++.|+|++|++.|+.+....|.. ..+...++.+|++.++|.+|+..+++-++++|.++ .++|.
T Consensus 10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~ 89 (142)
T PF13512_consen 10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYM 89 (142)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHH
Confidence 6788999999999999999999999999988764 67899999999999999999999999999999886 49999
Q ss_pred HHHHHHHccC---------------HHHHHHHHHHHHHhCCCCHHHHHHH
Q 007401 563 RGTAREALFC---------------YNEALQDFKHAMVLEPQNKAANLAE 597 (605)
Q Consensus 563 la~~~~~~g~---------------~~~A~~~~~~al~~~p~~~~~~~~~ 597 (605)
+|.+++.+.+ ..+|...|++.++..|++..+....
T Consensus 90 ~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya~dA~ 139 (142)
T PF13512_consen 90 RGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYAADAR 139 (142)
T ss_pred HHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChhHHHHH
Confidence 9999999887 8999999999999999998776544
No 99
>PLN02789 farnesyltranstransferase
Probab=98.90 E-value=3.3e-08 Score=99.78 Aligned_cols=119 Identities=16% Similarity=0.129 Sum_probs=104.7
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 007401 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELG-CFQQAEEDCSKTISLDKKNVKAYLRRGT 565 (605)
Q Consensus 487 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~la~ 565 (605)
+..+.+--+-.++...+++++|+..++++|+++|++..+|..++.++..++ ++++++.+++++++.+|++..+|+.++.
T Consensus 35 ~~~~a~~~~ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~ 114 (320)
T PLN02789 35 EFREAMDYFRAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRW 114 (320)
T ss_pred HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHH
Confidence 333334333345677889999999999999999999999999999999998 6899999999999999999999999999
Q ss_pred HHHHccCH--HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhhC
Q 007401 566 AREALFCY--NEALQDFKHAMVLEPQNKAANLAEKRLRKLIG 605 (605)
Q Consensus 566 ~~~~~g~~--~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g 605 (605)
++.++++. ++++.+++++++.+|+|..++.+.+.++..+|
T Consensus 115 ~l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~ 156 (320)
T PLN02789 115 LAEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLG 156 (320)
T ss_pred HHHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhh
Confidence 99999874 78899999999999999999999999887653
No 100
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=98.90 E-value=3.1e-08 Score=118.33 Aligned_cols=112 Identities=15% Similarity=0.140 Sum_probs=73.9
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH------
Q 007401 493 KEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTA------ 566 (605)
Q Consensus 493 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~------ 566 (605)
..+|..+++.|++++|+..|+++++.+|++..++..+|.++...|++++|++.|+++++++|++..++..++.+
T Consensus 355 ~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~ 434 (1157)
T PRK11447 355 IQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSP 434 (1157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCH
Confidence 34466666777777777777777777777777777777777777777777777777777777666555443332
Q ss_pred ------------------------------------HHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhh
Q 007401 567 ------------------------------------REALFCYNEALQDFKHAMVLEPQNKAANLAEKRLRKLI 604 (605)
Q Consensus 567 ------------------------------------~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~ 604 (605)
+...|++++|++.|+++++++|++..++..++.++...
T Consensus 435 ~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~ 508 (1157)
T PRK11447 435 EKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQA 508 (1157)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 33456677777777777777777766666666665544
No 101
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=98.90 E-value=1e-08 Score=98.84 Aligned_cols=108 Identities=34% Similarity=0.518 Sum_probs=97.6
Q ss_pred hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHH
Q 007401 486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGT----SATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYL 561 (605)
Q Consensus 486 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 561 (605)
.+.++.+...|+.||+.++|..|+..|.+.|+.... ++.+|.||+.|.+.+++|..|+.++.++++++|.+.++++
T Consensus 78 ~E~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~ 157 (390)
T KOG0551|consen 78 HEQAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYI 157 (390)
T ss_pred HHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhh
Confidence 457899999999999999999999999999997544 4678999999999999999999999999999999999999
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHHhCCCCHHH
Q 007401 562 RRGTAREALFCYNEALQDFKHAMVLEPQNKAA 593 (605)
Q Consensus 562 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 593 (605)
+-|.|++++.++++|..+++..++++-+...+
T Consensus 158 R~Akc~~eLe~~~~a~nw~ee~~~~d~e~K~~ 189 (390)
T KOG0551|consen 158 RGAKCLLELERFAEAVNWCEEGLQIDDEAKKA 189 (390)
T ss_pred hhhHHHHHHHHHHHHHHHHhhhhhhhHHHHHH
Confidence 99999999999999999999888776554433
No 102
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=98.89 E-value=5e-08 Score=93.85 Aligned_cols=141 Identities=13% Similarity=0.116 Sum_probs=124.4
Q ss_pred HHHHhHHHHHHhhhccCCCCCCCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Q 007401 460 LDLYDSLQEQVNIASNLVPLPDTNGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCF 539 (605)
Q Consensus 460 ~~l~~~~~e~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~ 539 (605)
++..+.++++++.+.+..+....+.+.+.++.|++++..+....+.++|+..++++++.+|++..+-..+|.+++..|+|
T Consensus 151 YQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y 230 (389)
T COG2956 151 YQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDY 230 (389)
T ss_pred HHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccch
Confidence 44556678888888777667777778899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 007401 540 QQAEEDCSKTISLDKKN-VKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAANLAEKRL 600 (605)
Q Consensus 540 ~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 600 (605)
++|++.++++++.||+. +.+...+..||.++|+.++.+..+.++.+..++..........+
T Consensus 231 ~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~~~l~l~~li 292 (389)
T COG2956 231 QKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGADAELMLADLI 292 (389)
T ss_pred HHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCccHHHHHHHHH
Confidence 99999999999999987 46888999999999999999999999999988765544443333
No 103
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=98.88 E-value=5.6e-08 Score=113.40 Aligned_cols=119 Identities=26% Similarity=0.221 Sum_probs=91.6
Q ss_pred ChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 007401 485 SIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRG 564 (605)
Q Consensus 485 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la 564 (605)
.+.....+..+|..++..|++++|+..|++++..+|++..++..++.+++..+++++|++.++++++.+|.+..+++.+|
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 200 (899)
T TIGR02917 121 DEGAAELLALRGLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDALLLKG 200 (899)
T ss_pred chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHH
Confidence 34556777777888888888888888888888777777777788888888888888888888888777777777788888
Q ss_pred HHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 007401 565 TAREALFCYNEALQDFKHAMVLEPQNKAANLAEKRLRKL 603 (605)
Q Consensus 565 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~ 603 (605)
.++...|++++|...|+++++.+|++...+..++.++..
T Consensus 201 ~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~ 239 (899)
T TIGR02917 201 DLLLSLGNIELALAAYRKAIALRPNNPAVLLALATILIE 239 (899)
T ss_pred HHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Confidence 888888888888888888887777777776666665543
No 104
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.87 E-value=1.1e-08 Score=105.44 Aligned_cols=82 Identities=15% Similarity=0.111 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 007401 523 ATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAANLAEKRLRK 602 (605)
Q Consensus 523 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 602 (605)
++++..||.+|+..++|++|+++|+.|+..+|+|...|.++|-.+..-.+.++|+..|++|+++.|+...+++.++-.+.
T Consensus 430 pdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~m 509 (579)
T KOG1125|consen 430 PDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCM 509 (579)
T ss_pred hhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhh
Confidence 44556666666666777777777777777777777777777777777777777777777777777777777766666554
Q ss_pred hh
Q 007401 603 LI 604 (605)
Q Consensus 603 ~~ 604 (605)
.+
T Consensus 510 Nl 511 (579)
T KOG1125|consen 510 NL 511 (579)
T ss_pred hh
Confidence 43
No 105
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=98.86 E-value=9.3e-08 Score=100.74 Aligned_cols=120 Identities=20% Similarity=0.190 Sum_probs=100.8
Q ss_pred ChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHH
Q 007401 485 SIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSA-----TYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKA 559 (605)
Q Consensus 485 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~-----~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 559 (605)
.+.....+..++..+.+.|++++|++.|+++++..|.+. ..+..+|..+.+.+++++|++.|+++++.+|++..+
T Consensus 137 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 216 (389)
T PRK11788 137 GDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAADPQCVRA 216 (389)
T ss_pred CcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHH
Confidence 345567888899999999999999999999998877653 356788999999999999999999999999999999
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHhh
Q 007401 560 YLRRGTAREALFCYNEALQDFKHAMVLEPQN-KAANLAEKRLRKLI 604 (605)
Q Consensus 560 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~~~~~~~~~ 604 (605)
++.+|.++.+.|++++|++.|+++++.+|.+ ...+..+..++...
T Consensus 217 ~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~ 262 (389)
T PRK11788 217 SILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQAL 262 (389)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHc
Confidence 9999999999999999999999999988876 34555666665544
No 106
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=98.85 E-value=3.7e-08 Score=114.86 Aligned_cols=119 Identities=20% Similarity=0.132 Sum_probs=108.6
Q ss_pred hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 007401 486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGT 565 (605)
Q Consensus 486 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~ 565 (605)
|+....+..+|..+...|++++|++.|+++++.+|+++.++.+++..+...++ .+|+..+++++++.|+++..+..+|.
T Consensus 767 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~ 845 (899)
T TIGR02917 767 PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGW 845 (899)
T ss_pred CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHH
Confidence 45567888999999999999999999999999999999999999999999999 88999999999999999999999999
Q ss_pred HHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhhC
Q 007401 566 AREALFCYNEALQDFKHAMVLEPQNKAANLAEKRLRKLIG 605 (605)
Q Consensus 566 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g 605 (605)
++...|++++|++.|+++++++|.+..++..++.++...|
T Consensus 846 ~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g 885 (899)
T TIGR02917 846 LLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATG 885 (899)
T ss_pred HHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcC
Confidence 9999999999999999999999999999998888877654
No 107
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.84 E-value=7.2e-08 Score=98.00 Aligned_cols=121 Identities=19% Similarity=0.111 Sum_probs=109.6
Q ss_pred CChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 007401 484 GSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRR 563 (605)
Q Consensus 484 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 563 (605)
..|++...+-..+.++++.+++++|++.+++++.++|+....+.++|+.|++.|++++|+..+++.+..+|+++..|.++
T Consensus 335 ~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~L 414 (484)
T COG4783 335 AQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLL 414 (484)
T ss_pred hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHH
Confidence 35677888889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhh
Q 007401 564 GTAREALFCYNEALQDFKHAMVLEPQNKAANLAEKRLRKLI 604 (605)
Q Consensus 564 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~ 604 (605)
+.+|..+|+..+|...+.+.+.+..+...+...+....++.
T Consensus 415 Aqay~~~g~~~~a~~A~AE~~~~~G~~~~A~~~l~~A~~~~ 455 (484)
T COG4783 415 AQAYAELGNRAEALLARAEGYALAGRLEQAIIFLMRASQQV 455 (484)
T ss_pred HHHHHHhCchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhc
Confidence 99999999999999888888888887777776666655543
No 108
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=98.82 E-value=6.5e-09 Score=105.51 Aligned_cols=114 Identities=39% Similarity=0.529 Sum_probs=108.7
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 007401 489 SELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTARE 568 (605)
Q Consensus 489 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 568 (605)
+..+.+.++.++..++|+.|+..|.++|+++|+++..+.+++.++.+.++|..|+.++.+|++++|...++|+++|.+..
T Consensus 4 a~e~k~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m 83 (476)
T KOG0376|consen 4 AEELKNEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVM 83 (476)
T ss_pred hhhhhhHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHH
Confidence 55677889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 007401 569 ALFCYNEALQDFKHAMVLEPQNKAANLAEKRLRK 602 (605)
Q Consensus 569 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 602 (605)
.++++.+|+..|++...+.|+++.+...+..+..
T Consensus 84 ~l~~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~ 117 (476)
T KOG0376|consen 84 ALGEFKKALLDLEKVKKLAPNDPDATRKIDECNK 117 (476)
T ss_pred hHHHHHHHHHHHHHhhhcCcCcHHHHHHHHHHHH
Confidence 9999999999999999999999999988887754
No 109
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.81 E-value=1.3e-07 Score=90.29 Aligned_cols=110 Identities=20% Similarity=0.197 Sum_probs=101.6
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHH
Q 007401 492 LKEKGNAAFKGKQWNKAVNYYSEAIKLNGTS---ATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKN---VKAYLRRGT 565 (605)
Q Consensus 492 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~ 565 (605)
.++.+..+++.|+|.+|...|.+.++..|++ +.++|.||++++.+|+|++|...|..+++-.|++ +++++.+|.
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~ 223 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV 223 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence 7888999999999999999999999999986 7899999999999999999999999999988765 679999999
Q ss_pred HHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 007401 566 AREALFCYNEALQDFKHAMVLEPQNKAANLAEKRLR 601 (605)
Q Consensus 566 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 601 (605)
++..+|+.++|...|+++++..|+...+......+.
T Consensus 224 ~~~~l~~~d~A~atl~qv~k~YP~t~aA~~Ak~~~~ 259 (262)
T COG1729 224 SLGRLGNTDEACATLQQVIKRYPGTDAAKLAKVALK 259 (262)
T ss_pred HHHHhcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHh
Confidence 999999999999999999999999988877666553
No 110
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.80 E-value=2.2e-08 Score=95.91 Aligned_cols=90 Identities=21% Similarity=0.206 Sum_probs=85.1
Q ss_pred ChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 007401 485 SIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRG 564 (605)
Q Consensus 485 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la 564 (605)
.|+++-.|++++-.|.+.|.|+.|++..+.+|.++|+++.+|..+|.+|+.+|+|.+|++.|++++.+||+|...+-+|.
T Consensus 111 ~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A~~aykKaLeldP~Ne~~K~nL~ 190 (304)
T KOG0553|consen 111 DPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEAIEAYKKALELDPDNESYKSNLK 190 (304)
T ss_pred CCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHHHHHHHhhhccCCCcHHHHHHHH
Confidence 56779999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHccCHH
Q 007401 565 TAREALFCYN 574 (605)
Q Consensus 565 ~~~~~~g~~~ 574 (605)
.+-.++++..
T Consensus 191 ~Ae~~l~e~~ 200 (304)
T KOG0553|consen 191 IAEQKLNEPK 200 (304)
T ss_pred HHHHHhcCCC
Confidence 8887777665
No 111
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.80 E-value=6.9e-08 Score=89.26 Aligned_cols=107 Identities=28% Similarity=0.398 Sum_probs=96.2
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCC----------CHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 007401 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKL--------NGT----------SATYYSNRAAAYLELGCFQQAEEDCSK 548 (605)
Q Consensus 487 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~p~----------~~~~~~~la~~~~~~~~~~~A~~~~~~ 548 (605)
.....+.+.|+.+|+.|+|.+|...|..|+.. .|. ....+.|+++|++..++|-++++.++.
T Consensus 176 kav~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~se 255 (329)
T KOG0545|consen 176 KAVPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSE 255 (329)
T ss_pred hhhHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHH
Confidence 44678899999999999999999999999842 233 356789999999999999999999999
Q ss_pred HHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHH
Q 007401 549 TISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAA 593 (605)
Q Consensus 549 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 593 (605)
.++.+|.|.++||.+|.++...=+.++|...|+++|+++|.-..+
T Consensus 256 iL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasv 300 (329)
T KOG0545|consen 256 ILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASV 300 (329)
T ss_pred HHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHH
Confidence 999999999999999999999999999999999999999976544
No 112
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=98.80 E-value=1.7e-07 Score=78.22 Aligned_cols=104 Identities=28% Similarity=0.309 Sum_probs=93.6
Q ss_pred hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC----HHHHH
Q 007401 486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKN----VKAYL 561 (605)
Q Consensus 486 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~ 561 (605)
.+....+-..|..+...|+.+.|++.|.+++.+.|..+.+|+|+++.+...++.++|++++++|+++.-.. -.+|.
T Consensus 40 ~e~S~~LEl~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~v 119 (175)
T KOG4555|consen 40 IKASRELELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFV 119 (175)
T ss_pred HHHHHHHHHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHH
Confidence 34566777889999999999999999999999999999999999999999999999999999999986443 35899
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHHhCCC
Q 007401 562 RRGTAREALFCYNEALQDFKHAMVLEPQ 589 (605)
Q Consensus 562 ~la~~~~~~g~~~~A~~~~~~al~~~p~ 589 (605)
.+|.+|..+|+.+.|...|+.+-++...
T Consensus 120 QRg~lyRl~g~dd~AR~DFe~AA~LGS~ 147 (175)
T KOG4555|consen 120 QRGLLYRLLGNDDAARADFEAAAQLGSK 147 (175)
T ss_pred HHHHHHHHhCchHHHHHhHHHHHHhCCH
Confidence 9999999999999999999999887543
No 113
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.79 E-value=4.3e-08 Score=104.20 Aligned_cols=107 Identities=23% Similarity=0.178 Sum_probs=100.5
Q ss_pred hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH--HHHHHHhcCCCCHHHHHHH
Q 007401 486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEE--DCSKTISLDKKNVKAYLRR 563 (605)
Q Consensus 486 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~--~~~~al~~~p~~~~~~~~l 563 (605)
+..+..|+..|..+..+|++++|.+.|..++.++|++......+|.++.+.|+-.-|.. .+..++++||.|+++||++
T Consensus 681 ~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~L 760 (799)
T KOG4162|consen 681 PLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYL 760 (799)
T ss_pred hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHH
Confidence 56688999999999999999999999999999999999999999999999998666666 9999999999999999999
Q ss_pred HHHHHHccCHHHHHHHHHHHHHhCCCCHH
Q 007401 564 GTAREALFCYNEALQDFKHAMVLEPQNKA 592 (605)
Q Consensus 564 a~~~~~~g~~~~A~~~~~~al~~~p~~~~ 592 (605)
|.++.++|+.++|.+||+.++++++.++.
T Consensus 761 G~v~k~~Gd~~~Aaecf~aa~qLe~S~PV 789 (799)
T KOG4162|consen 761 GEVFKKLGDSKQAAECFQAALQLEESNPV 789 (799)
T ss_pred HHHHHHccchHHHHHHHHHHHhhccCCCc
Confidence 99999999999999999999999988753
No 114
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=98.78 E-value=1.3e-07 Score=102.35 Aligned_cols=119 Identities=19% Similarity=0.161 Sum_probs=114.1
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 007401 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTA 566 (605)
Q Consensus 487 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~ 566 (605)
...+.+..+|+.++..|++++|++.+.++|+.+|.++.+|+.+|.+|.++|+.+++..+.-.|-.++|++...|..++..
T Consensus 137 ~~l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladl 216 (895)
T KOG2076|consen 137 PELRQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADL 216 (895)
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHH
Confidence 44778888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhhC
Q 007401 567 REALFCYNEALQDFKHAMVLEPQNKAANLAEKRLRKLIG 605 (605)
Q Consensus 567 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g 605 (605)
..++|++++|..||.+|++.+|.+....+....+++++|
T Consensus 217 s~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G 255 (895)
T KOG2076|consen 217 SEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTG 255 (895)
T ss_pred HHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhC
Confidence 999999999999999999999999999999999888776
No 115
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=98.78 E-value=2.1e-07 Score=106.37 Aligned_cols=112 Identities=13% Similarity=-0.001 Sum_probs=105.7
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 007401 488 ASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAR 567 (605)
Q Consensus 488 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 567 (605)
....+..++..+...|++++|++.|++++...|++..++..+|.++...|++++|++.++++++++|++..+++.+|.++
T Consensus 358 ~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~a 437 (765)
T PRK10049 358 WLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTA 437 (765)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHH
Confidence 35678889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 007401 568 EALFCYNEALQDFKHAMVLEPQNKAANLAEKR 599 (605)
Q Consensus 568 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~ 599 (605)
..+|++++|++.++++++.+|+++.+......
T Consensus 438 l~~~~~~~A~~~~~~ll~~~Pd~~~~~~~~~~ 469 (765)
T PRK10049 438 LDLQEWRQMDVLTDDVVAREPQDPGVQRLARA 469 (765)
T ss_pred HHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 99999999999999999999999877665443
No 116
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.78 E-value=1e-07 Score=89.80 Aligned_cols=118 Identities=14% Similarity=0.126 Sum_probs=109.5
Q ss_pred hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 007401 486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGT 565 (605)
Q Consensus 486 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~ 565 (605)
|++... .+++..+...|+-+++..+..++...+|.+...+..+|......|+|.+|+..++++..++|+++++|.-+|.
T Consensus 64 p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lga 142 (257)
T COG5010 64 PEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGA 142 (257)
T ss_pred cchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHH
Confidence 444555 8889999999999999999999988899999999999999999999999999999999999999999999999
Q ss_pred HHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhh
Q 007401 566 AREALFCYNEALQDFKHAMVLEPQNKAANLAEKRLRKLI 604 (605)
Q Consensus 566 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~ 604 (605)
+|.+.|++++|...|.+++++.|+++.+..+++..+...
T Consensus 143 aldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~ 181 (257)
T COG5010 143 ALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLR 181 (257)
T ss_pred HHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHc
Confidence 999999999999999999999999999999998877653
No 117
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.75 E-value=5.2e-08 Score=75.89 Aligned_cols=68 Identities=26% Similarity=0.401 Sum_probs=40.8
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 007401 531 AAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAANLAEK 598 (605)
Q Consensus 531 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 598 (605)
.+|++.++|++|+++++++++++|+++..|+.+|.++..+|++++|.++|+++++.+|++..+.....
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a 70 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRA 70 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHH
Confidence 45555666666666666666666666666666666666666666666666666666665555544443
No 118
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.73 E-value=7e-08 Score=99.30 Aligned_cols=118 Identities=20% Similarity=0.272 Sum_probs=103.7
Q ss_pred ChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC----CC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH
Q 007401 485 SIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLN----GT---SATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNV 557 (605)
Q Consensus 485 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~----p~---~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~ 557 (605)
.|.+.-.+.++|...+..+.|.+|+.+|++++..- ++ -...+.|+|.++.+++.|.+|+.+|++++.+.|+++
T Consensus 410 ~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~ 489 (611)
T KOG1173|consen 410 APSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDA 489 (611)
T ss_pred CCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCch
Confidence 45667788899999999999999999999998432 22 245689999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 007401 558 KAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAANLAEKRLRK 602 (605)
Q Consensus 558 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 602 (605)
..+-.+|.+|..+|+++.|++.|.++|.++|+|..+...++.+.+
T Consensus 490 ~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~aie 534 (611)
T KOG1173|consen 490 STHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAIE 534 (611)
T ss_pred hHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 999999999999999999999999999999999877777666543
No 119
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.73 E-value=3.8e-08 Score=75.44 Aligned_cols=66 Identities=20% Similarity=0.240 Sum_probs=43.7
Q ss_pred HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 007401 500 FKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGT 565 (605)
Q Consensus 500 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~ 565 (605)
++.|+|++|++.|++++..+|++..+++.++.||++.|++++|.+.+++++..+|+++..+..++.
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~ 67 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQ 67 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence 456667777777777777777777777777777777777777777777777666666655555543
No 120
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.72 E-value=2.7e-07 Score=86.10 Aligned_cols=131 Identities=15% Similarity=0.075 Sum_probs=97.1
Q ss_pred HHHHHhhhccCCCCCCCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 007401 466 LQEQVNIASNLVPLPDTNGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEED 545 (605)
Q Consensus 466 ~~e~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~ 545 (605)
..++++...... .++|.+.-.+...--..-.+|+--+||+.+.+-++..+.+.++|..++.+|...++|.+|.-+
T Consensus 102 ~~~A~e~y~~lL-----~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fC 176 (289)
T KOG3060|consen 102 YKEAIEYYESLL-----EDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFC 176 (289)
T ss_pred hhhHHHHHHHHh-----ccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHH
Confidence 344555543332 233454555555555666677777888888888888888888888888888888888888888
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHcc---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 007401 546 CSKTISLDKKNVKAYLRRGTAREALF---CYNEALQDFKHAMVLEPQNKAANLAEKRLR 601 (605)
Q Consensus 546 ~~~al~~~p~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 601 (605)
|++.+-+.|.++..+.++|.+++-+| +++-|.++|.++++++|.+..+++.+-.+-
T Consensus 177 lEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~GI~lc~ 235 (289)
T KOG3060|consen 177 LEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRALFGIYLCG 235 (289)
T ss_pred HHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHHHHHHHH
Confidence 88888888888888888888877665 466788888888888887777777665543
No 121
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.71 E-value=3.3e-07 Score=78.05 Aligned_cols=96 Identities=18% Similarity=0.032 Sum_probs=88.0
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC---CHHHHHHH
Q 007401 490 ELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTS---ATYYSNRAAAYLELGCFQQAEEDCSKTISLDKK---NVKAYLRR 563 (605)
Q Consensus 490 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~l 563 (605)
+.+++.|..+-..|+.++|+..|++++....+. ..++..+|.++..+|++++|+..+++++...|+ +......+
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~ 81 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFL 81 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHH
Confidence 468899999999999999999999999976544 678999999999999999999999999999888 78888889
Q ss_pred HHHHHHccCHHHHHHHHHHHHH
Q 007401 564 GTAREALFCYNEALQDFKHAMV 585 (605)
Q Consensus 564 a~~~~~~g~~~~A~~~~~~al~ 585 (605)
+.++...|++++|+..+-.++.
T Consensus 82 Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 82 ALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 9999999999999999988876
No 122
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.70 E-value=9e-08 Score=74.52 Aligned_cols=70 Identities=19% Similarity=0.354 Sum_probs=65.5
Q ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 007401 496 GNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGT 565 (605)
Q Consensus 496 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~ 565 (605)
...|++.++|++|++++++++.++|+++..+..+|.++.++|+|.+|+++++++++.+|+++.+...++.
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a~ 71 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRAM 71 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHHh
Confidence 4678999999999999999999999999999999999999999999999999999999999887776554
No 123
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.70 E-value=2e-08 Score=96.43 Aligned_cols=120 Identities=14% Similarity=0.108 Sum_probs=106.4
Q ss_pred ChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC---CCHHHHH
Q 007401 485 SIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDK---KNVKAYL 561 (605)
Q Consensus 485 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p---~~~~~~~ 561 (605)
.+.+.+.....|..||..++.+-|+.+|++.+++.-.+++.+.|+|.|.+..++|+-++..|++|+..-. .-++.||
T Consensus 320 ~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWY 399 (478)
T KOG1129|consen 320 HPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWY 399 (478)
T ss_pred CCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhh
Confidence 3455667777889999999999999999999999999999999999999999999999999999998643 3467999
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhh
Q 007401 562 RRGTAREALFCYNEALQDFKHAMVLEPQNKAANLAEKRLRKLI 604 (605)
Q Consensus 562 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~ 604 (605)
++|.+....|++..|..+|+-++..++++..++.+++.+..+.
T Consensus 400 Nlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~ 442 (478)
T KOG1129|consen 400 NLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARS 442 (478)
T ss_pred ccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhc
Confidence 9999999999999999999999999999999999988776544
No 124
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.69 E-value=5e-08 Score=97.28 Aligned_cols=117 Identities=22% Similarity=0.211 Sum_probs=106.7
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 007401 489 SELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTARE 568 (605)
Q Consensus 489 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 568 (605)
+.++.+.|++.|..|+|++|.+.|++++..+....++++++|..+-.+|+.++|+++|-+.-.+--++.+.++.++.+|.
T Consensus 490 ~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye 569 (840)
T KOG2003|consen 490 AAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYE 569 (840)
T ss_pred HHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 55677889999999999999999999999999999999999999999999999999998877766788999999999999
Q ss_pred HccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhhC
Q 007401 569 ALFCYNEALQDFKHAMVLEPQNKAANLAEKRLRKLIG 605 (605)
Q Consensus 569 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g 605 (605)
.+.+..+|++++.++..+-|+++.++..++.++.+.|
T Consensus 570 ~led~aqaie~~~q~~slip~dp~ilskl~dlydqeg 606 (840)
T KOG2003|consen 570 LLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEG 606 (840)
T ss_pred HhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhccc
Confidence 9999999999999999999999999999998887654
No 125
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.65 E-value=2.7e-07 Score=95.29 Aligned_cols=87 Identities=22% Similarity=0.243 Sum_probs=81.7
Q ss_pred ChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 007401 485 SIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRG 564 (605)
Q Consensus 485 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la 564 (605)
.+.....|+.+|.++++.|+|++|+..+++++.++|+++.+|+++|.+|+.+|+|++|+.+|+++++++|+++.+...++
T Consensus 32 ~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~ 111 (356)
T PLN03088 32 DPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTAKAALEKGASLAPGDSRFTKLIK 111 (356)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 44567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcc
Q 007401 565 TAREALF 571 (605)
Q Consensus 565 ~~~~~~g 571 (605)
.|...+.
T Consensus 112 ~~~~kl~ 118 (356)
T PLN03088 112 ECDEKIA 118 (356)
T ss_pred HHHHHHH
Confidence 8876663
No 126
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.65 E-value=7.9e-08 Score=73.66 Aligned_cols=68 Identities=19% Similarity=0.168 Sum_probs=61.9
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 007401 533 YLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAANLAEKRL 600 (605)
Q Consensus 533 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 600 (605)
+++.|+|++|++.|+++++.+|++..+++.++.+|.+.|++++|...+++++..+|+++.++..++.+
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~i 68 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQI 68 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHHH
T ss_pred ChhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhcC
Confidence 35789999999999999999999999999999999999999999999999999999988877766543
No 127
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.64 E-value=2.7e-07 Score=92.17 Aligned_cols=100 Identities=17% Similarity=0.218 Sum_probs=92.1
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 007401 489 SELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTARE 568 (605)
Q Consensus 489 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 568 (605)
...+.+++.++.+.++|.+|+...++++.++|+|..++|.+|.+++.+++|+.|+.+|+++++++|+|-.+...+..|..
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~ 336 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQ 336 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 45788999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HccCHHHH-HHHHHHHHHhCC
Q 007401 569 ALFCYNEA-LQDFKHAMVLEP 588 (605)
Q Consensus 569 ~~g~~~~A-~~~~~~al~~~p 588 (605)
+..++.+. .+.|.+++..-+
T Consensus 337 k~~~~~~kekk~y~~mF~k~~ 357 (397)
T KOG0543|consen 337 KIREYEEKEKKMYANMFAKLA 357 (397)
T ss_pred HHHHHHHHHHHHHHHHhhccc
Confidence 88877665 778888887654
No 128
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.64 E-value=8.7e-07 Score=86.24 Aligned_cols=109 Identities=15% Similarity=0.125 Sum_probs=94.1
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHH---HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH---HHHH
Q 007401 488 ASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYY---SNRAAAYLELGCFQQAEEDCSKTISLDKKNV---KAYL 561 (605)
Q Consensus 488 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~---~~la~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~ 561 (605)
..+.++..|..+++.|+|++|++.|++++...|....+. +.+|.+|++.++|++|+..+++.++++|+++ .++|
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y 110 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLY 110 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHH
Confidence 467788999999999999999999999999999986554 8999999999999999999999999998774 5899
Q ss_pred HHHHHHHHcc---------------C---HHHHHHHHHHHHHhCCCCHHHHHH
Q 007401 562 RRGTAREALF---------------C---YNEALQDFKHAMVLEPQNKAANLA 596 (605)
Q Consensus 562 ~la~~~~~~g---------------~---~~~A~~~~~~al~~~p~~~~~~~~ 596 (605)
.+|.++...+ + ..+|++.|++.++..|+...+...
T Consensus 111 ~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A 163 (243)
T PRK10866 111 MRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDA 163 (243)
T ss_pred HHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHH
Confidence 9999875554 1 357889999999999988654443
No 129
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=98.62 E-value=1.5e-07 Score=94.32 Aligned_cols=117 Identities=19% Similarity=0.153 Sum_probs=93.4
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 007401 489 SELLKEKGNAAFKGKQWNKAVNYYSEAIKLN--GTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTA 566 (605)
Q Consensus 489 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~ 566 (605)
...+......+.+.++++++...++++.... +.++.+|..+|.++.+.|++++|+++|+++++++|+++.++..++.+
T Consensus 110 ~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~ 189 (280)
T PF13429_consen 110 PRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWL 189 (280)
T ss_dssp --------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred cchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 4456666778899999999999999987655 67899999999999999999999999999999999999999999999
Q ss_pred HHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhhC
Q 007401 567 REALFCYNEALQDFKHAMVLEPQNKAANLAEKRLRKLIG 605 (605)
Q Consensus 567 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g 605 (605)
+...|+++++.+.++...+..|.++..+..++.++..+|
T Consensus 190 li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg 228 (280)
T PF13429_consen 190 LIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLG 228 (280)
T ss_dssp HCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT
T ss_pred HHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccc
Confidence 999999999999999999888888888888888777654
No 130
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=98.62 E-value=7.8e-07 Score=85.82 Aligned_cols=116 Identities=22% Similarity=0.270 Sum_probs=104.9
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 007401 490 ELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTS-----ATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRG 564 (605)
Q Consensus 490 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la 564 (605)
.++..+-++|....+|++|++.-++..++.++. +..|..+++.+....++++|...+.+|++.||++..+-..+|
T Consensus 142 ~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG 221 (389)
T COG2956 142 GALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILG 221 (389)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhh
Confidence 456778889999999999999999999988765 778999999999999999999999999999999999999999
Q ss_pred HHHHHccCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHhhC
Q 007401 565 TAREALFCYNEALQDFKHAMVLEPQN-KAANLAEKRLRKLIG 605 (605)
Q Consensus 565 ~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~~~~~~~~~g 605 (605)
.++...|+|++|++.++.+++.||+. ..+...+..+|..+|
T Consensus 222 ~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg 263 (389)
T COG2956 222 RVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLG 263 (389)
T ss_pred HHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhC
Confidence 99999999999999999999999977 567777777777654
No 131
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.61 E-value=4.3e-07 Score=92.92 Aligned_cols=72 Identities=15% Similarity=0.138 Sum_probs=67.4
Q ss_pred CCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 007401 482 TNGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATY---YSNRAAAYLELGCFQQAEEDCSKTISLD 553 (605)
Q Consensus 482 ~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~---~~~la~~~~~~~~~~~A~~~~~~al~~~ 553 (605)
...+|+.+..|+++|..|++.|+|++|+..|+++++++|++.++ |+++|.+|.++|++++|++++++|+++.
T Consensus 68 ~~~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels 142 (453)
T PLN03098 68 SEADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY 142 (453)
T ss_pred ccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 34578889999999999999999999999999999999999855 9999999999999999999999999983
No 132
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.61 E-value=6.5e-07 Score=80.11 Aligned_cols=98 Identities=17% Similarity=0.095 Sum_probs=84.6
Q ss_pred hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHH
Q 007401 486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTS---ATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLR 562 (605)
Q Consensus 486 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 562 (605)
+-.....+.+|..++..|+|++|+..|++++...++. ..+...++.+++..++|++|+..++. +.-.+-.+.++..
T Consensus 45 ~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~-~~~~~~~~~~~~~ 123 (145)
T PF09976_consen 45 PYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQ-IPDEAFKALAAEL 123 (145)
T ss_pred hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHh-ccCcchHHHHHHH
Confidence 3446788889999999999999999999999987665 45788899999999999999999966 3444456778899
Q ss_pred HHHHHHHccCHHHHHHHHHHHH
Q 007401 563 RGTAREALFCYNEALQDFKHAM 584 (605)
Q Consensus 563 la~~~~~~g~~~~A~~~~~~al 584 (605)
+|.+|...|++++|...|++++
T Consensus 124 ~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 124 LGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHHCCCHHHHHHHHHHhC
Confidence 9999999999999999999874
No 133
>PRK14574 hmsH outer membrane protein; Provisional
Probab=98.61 E-value=6.4e-07 Score=101.18 Aligned_cols=98 Identities=12% Similarity=-0.029 Sum_probs=50.5
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCH
Q 007401 494 EKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREALFCY 573 (605)
Q Consensus 494 ~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 573 (605)
.+...+...|++++|+.++++++...|.....+..+|.++..+++|++|++.|+++++.+|+++.+++.++.++...++.
T Consensus 73 dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~ 152 (822)
T PRK14574 73 DWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRG 152 (822)
T ss_pred HHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCH
Confidence 34444444455555555555555222222333333344555555555555555555555555555555555555555555
Q ss_pred HHHHHHHHHHHHhCCCCH
Q 007401 574 NEALQDFKHAMVLEPQNK 591 (605)
Q Consensus 574 ~~A~~~~~~al~~~p~~~ 591 (605)
++|++.++++.+.+|++.
T Consensus 153 ~eAl~~l~~l~~~dp~~~ 170 (822)
T PRK14574 153 GVVLKQATELAERDPTVQ 170 (822)
T ss_pred HHHHHHHHHhcccCcchH
Confidence 555555555555555533
No 134
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=98.61 E-value=4e-07 Score=99.19 Aligned_cols=119 Identities=15% Similarity=0.139 Sum_probs=103.2
Q ss_pred ChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 007401 485 SIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTS-ATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRR 563 (605)
Q Consensus 485 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 563 (605)
.+..++.++.+|..+..+|+|++|..+|.++++.++++ .-.++.+|+.|+..|++..++.+|++.++..|++.+....+
T Consensus 303 ~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iL 382 (1018)
T KOG2002|consen 303 KSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKIL 382 (1018)
T ss_pred hHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHH
Confidence 34567888999999999999999999999999988887 77788999999999999999999999999999999999999
Q ss_pred HHHHHHcc----CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 007401 564 GTAREALF----CYNEALQDFKHAMVLEPQNKAANLAEKRLRKL 603 (605)
Q Consensus 564 a~~~~~~g----~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~ 603 (605)
|.+|...+ ..++|...+.++++..|.|..++..++.++..
T Consensus 383 G~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~ 426 (1018)
T KOG2002|consen 383 GCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQ 426 (1018)
T ss_pred HhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHh
Confidence 98888775 56788889999999999999988888887654
No 135
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.60 E-value=1.9e-07 Score=95.53 Aligned_cols=70 Identities=13% Similarity=0.063 Sum_probs=67.0
Q ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHH---HHHHHHHHHHccCHHHHHHHHHHHHHhC
Q 007401 518 LNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKA---YLRRGTAREALFCYNEALQDFKHAMVLE 587 (605)
Q Consensus 518 ~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~---~~~la~~~~~~g~~~~A~~~~~~al~~~ 587 (605)
.+|+++..++++|.+|+++++|++|+..|+++++++|++..+ ||++|.+|..+|++++|+++|++++++.
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels 142 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY 142 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 589999999999999999999999999999999999999854 9999999999999999999999999973
No 136
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=98.59 E-value=5.4e-07 Score=80.40 Aligned_cols=96 Identities=20% Similarity=0.217 Sum_probs=79.0
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccC--
Q 007401 505 WNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGC----------FQQAEEDCSKTISLDKKNVKAYLRRGTAREALFC-- 572 (605)
Q Consensus 505 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~----------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~-- 572 (605)
|++|.+.|+.....+|.+++.+++-|.+++.+.+ +++|++-|++|+.++|+...+++++|.+|...+.
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~ 86 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLT 86 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhc
Confidence 6789999999999999999999999998887743 6778889999999999999999999999977754
Q ss_pred ---------HHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 007401 573 ---------YNEALQDFKHAMVLEPQNKAANLAEKRL 600 (605)
Q Consensus 573 ---------~~~A~~~~~~al~~~p~~~~~~~~~~~~ 600 (605)
|++|.++|+++...+|+|...+..+...
T Consensus 87 ~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~~ 123 (186)
T PF06552_consen 87 PDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEMA 123 (186)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 8899999999999999999888777654
No 137
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.58 E-value=1e-06 Score=83.56 Aligned_cols=109 Identities=19% Similarity=0.216 Sum_probs=89.9
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH---HHHH
Q 007401 488 ASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTS---ATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNV---KAYL 561 (605)
Q Consensus 488 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~ 561 (605)
..+.++..|..+++.|+|.+|+..|++++...|.. ..+.+.+|.+++..++|.+|+..+++.++..|+++ .++|
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y 83 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALY 83 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHH
Confidence 46789999999999999999999999999998875 78899999999999999999999999999999864 5999
Q ss_pred HHHHHHHHcc-----------CHHHHHHHHHHHHHhCCCCHHHHHH
Q 007401 562 RRGTAREALF-----------CYNEALQDFKHAMVLEPQNKAANLA 596 (605)
Q Consensus 562 ~la~~~~~~g-----------~~~~A~~~~~~al~~~p~~~~~~~~ 596 (605)
.+|.+++.+. ...+|+..|+..++..|+...+...
T Consensus 84 ~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A 129 (203)
T PF13525_consen 84 MLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEA 129 (203)
T ss_dssp HHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHH
T ss_pred HHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHH
Confidence 9999976653 3458999999999999998655433
No 138
>PRK14574 hmsH outer membrane protein; Provisional
Probab=98.56 E-value=1.6e-06 Score=97.93 Aligned_cols=117 Identities=15% Similarity=0.109 Sum_probs=102.3
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 007401 488 ASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAR 567 (605)
Q Consensus 488 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 567 (605)
....+..+|..+..+|+|++|++.|+++++.+|+++.++..++..+.+.+++++|++.++++.+.+|.+... ..++.++
T Consensus 101 ~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~-l~layL~ 179 (822)
T PRK14574 101 SSRGLASAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNY-MTLSYLN 179 (822)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHH-HHHHHHH
Confidence 356666678899999999999999999999999999999999999999999999999999999999985554 5566666
Q ss_pred HHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhhC
Q 007401 568 EALFCYNEALQDFKHAMVLEPQNKAANLAEKRLRKLIG 605 (605)
Q Consensus 568 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g 605 (605)
...+++.+|++.|+++++.+|++..++..+..++...|
T Consensus 180 ~~~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~ 217 (822)
T PRK14574 180 RATDRNYDALQASSEAVRLAPTSEEVLKNHLEILQRNR 217 (822)
T ss_pred HhcchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 66788878999999999999999999888777665543
No 139
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.54 E-value=2.6e-07 Score=91.79 Aligned_cols=119 Identities=20% Similarity=0.272 Sum_probs=108.1
Q ss_pred hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH------------HHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 007401 486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSA------------TYYSNRAAAYLELGCFQQAEEDCSKTISLD 553 (605)
Q Consensus 486 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~------------~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 553 (605)
...+++++-.|.+++...+.+.|+..|++++.++|+.. ..+...|+-.++.|+|.+|.++|..+|.+|
T Consensus 200 ~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~id 279 (486)
T KOG0550|consen 200 ATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNID 279 (486)
T ss_pred cchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCC
Confidence 45678888999999999999999999999999999863 457788999999999999999999999999
Q ss_pred CCC----HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhh
Q 007401 554 KKN----VKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAANLAEKRLRKLI 604 (605)
Q Consensus 554 p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~ 604 (605)
|+| +..|++++.+..++|+.++|+..+++++++++.-..++...+.++..+
T Consensus 280 P~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~l 334 (486)
T KOG0550|consen 280 PSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLAL 334 (486)
T ss_pred ccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHH
Confidence 975 568999999999999999999999999999999999998888887654
No 140
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.54 E-value=5.8e-07 Score=82.66 Aligned_cols=108 Identities=13% Similarity=0.075 Sum_probs=92.4
Q ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHc
Q 007401 496 GNAAFKGKQWNKAVNYYSEAIKLNGTS--ATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKN---VKAYLRRGTAREAL 570 (605)
Q Consensus 496 g~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~ 570 (605)
.+.+|-..+|..+...+.+.++.++.+ ...++++|.++..++++++|+..|++++.+.++. +.+|+++|.++...
T Consensus 6 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~ 85 (168)
T CHL00033 6 RNDNFIDKTFTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSN 85 (168)
T ss_pred ccccccccccccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHc
Confidence 345566677888888887776666655 7788999999999999999999999999987653 45899999999999
Q ss_pred cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 007401 571 FCYNEALQDFKHAMVLEPQNKAANLAEKRLRKL 603 (605)
Q Consensus 571 g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~ 603 (605)
|++++|++.|+++++++|.+...+..++.++..
T Consensus 86 g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~~ 118 (168)
T CHL00033 86 GEHTKALEYYFQALERNPFLPQALNNMAVICHY 118 (168)
T ss_pred CCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH
Confidence 999999999999999999999988888887763
No 141
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.54 E-value=7.8e-07 Score=92.48 Aligned_cols=104 Identities=14% Similarity=-0.015 Sum_probs=94.6
Q ss_pred ChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH----HHH
Q 007401 485 SIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNV----KAY 560 (605)
Q Consensus 485 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~----~~~ 560 (605)
.+.....+..+|..+..+|++++|+..++++++++|++..++..+|.++++.|++++|+..+++++...|.++ ..|
T Consensus 110 ~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~ 189 (355)
T cd05804 110 NPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNW 189 (355)
T ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHH
Confidence 4566778888999999999999999999999999999999999999999999999999999999999987543 356
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhCC
Q 007401 561 LRRGTAREALFCYNEALQDFKHAMVLEP 588 (605)
Q Consensus 561 ~~la~~~~~~g~~~~A~~~~~~al~~~p 588 (605)
+.++.++...|++++|...|++++...|
T Consensus 190 ~~la~~~~~~G~~~~A~~~~~~~~~~~~ 217 (355)
T cd05804 190 WHLALFYLERGDYEAALAIYDTHIAPSA 217 (355)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHhcccc
Confidence 7899999999999999999999987666
No 142
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=98.54 E-value=5.2e-07 Score=82.13 Aligned_cols=107 Identities=21% Similarity=0.143 Sum_probs=103.2
Q ss_pred hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 007401 486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGT 565 (605)
Q Consensus 486 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~ 565 (605)
.+.+..+++.|..|-..|-+.-|--.|.+++.+.|+.+++++.+|..+.+.|+|+.|.+.|+..+++||.+-.++.|+|.
T Consensus 62 eeRA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi 141 (297)
T COG4785 62 EERAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGI 141 (297)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccce
Confidence 36689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHccCHHHHHHHHHHHHHhCCCCHH
Q 007401 566 AREALFCYNEALQDFKHAMVLEPQNKA 592 (605)
Q Consensus 566 ~~~~~g~~~~A~~~~~~al~~~p~~~~ 592 (605)
.++.-|+|+-|.+.+.+-.+-+|+|+.
T Consensus 142 ~~YY~gR~~LAq~d~~~fYQ~D~~DPf 168 (297)
T COG4785 142 ALYYGGRYKLAQDDLLAFYQDDPNDPF 168 (297)
T ss_pred eeeecCchHhhHHHHHHHHhcCCCChH
Confidence 999999999999999999999999974
No 143
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.53 E-value=2.6e-06 Score=91.72 Aligned_cols=104 Identities=20% Similarity=0.155 Sum_probs=69.7
Q ss_pred HHHHHHHHHHHHHHCCC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-----------------------------
Q 007401 488 ASELLKEKGNAAFKGKQ---WNKAVNYYSEAIKLNGTSATYYSNRAAAYLE----------------------------- 535 (605)
Q Consensus 488 ~a~~~~~~g~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----------------------------- 535 (605)
.+..++..|..++..++ +.+|+.+|+++++++|+++.++..++.+|..
T Consensus 338 ~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~ 417 (517)
T PRK10153 338 AALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELN 417 (517)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCc
Confidence 46667778888877665 7899999999999999987776665555432
Q ss_pred ---------------cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHH
Q 007401 536 ---------------LGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKA 592 (605)
Q Consensus 536 ---------------~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 592 (605)
.|++++|...+++|++++| +..+|..+|.++...|++++|.+.|++|++++|.++.
T Consensus 418 ~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 418 VLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence 3455566666666666665 3556666666666666666666666666666665553
No 144
>PRK11906 transcriptional regulator; Provisional
Probab=98.49 E-value=6.3e-06 Score=84.65 Aligned_cols=112 Identities=11% Similarity=-0.038 Sum_probs=79.2
Q ss_pred HHHHHHHHHHHCC---CHHHHHHHHHHHH---HhCCCCHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHhcCCC
Q 007401 491 LLKEKGNAAFKGK---QWNKAVNYYSEAI---KLNGTSATYYSNRAAAYLEL---------GCFQQAEEDCSKTISLDKK 555 (605)
Q Consensus 491 ~~~~~g~~~~~~g---~~~~A~~~~~~al---~~~p~~~~~~~~la~~~~~~---------~~~~~A~~~~~~al~~~p~ 555 (605)
.++..|...+..+ +.++|+.+|.+++ .++|+++.+|..++.||+.. .+..+|.+..++|+++||.
T Consensus 257 d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~ 336 (458)
T PRK11906 257 DEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTV 336 (458)
T ss_pred HHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCC
Confidence 4466666665555 3456777777777 77777777777777777654 1355677777777777777
Q ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 007401 556 NVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAANLAEKRLRK 602 (605)
Q Consensus 556 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 602 (605)
|+.++..+|.++...++++.|...|++++.++|+.+.++...+.++.
T Consensus 337 Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~ 383 (458)
T PRK11906 337 DGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHF 383 (458)
T ss_pred CHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHH
Confidence 77777777777777777777777777777777777777777666543
No 145
>PRK11906 transcriptional regulator; Provisional
Probab=98.48 E-value=2.1e-06 Score=88.08 Aligned_cols=110 Identities=11% Similarity=-0.051 Sum_probs=99.3
Q ss_pred CChHHHHHHHHHHHHHHHC---------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 007401 484 GSIDASELLKEKGNAAFKG---------KQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDK 554 (605)
Q Consensus 484 ~~~~~a~~~~~~g~~~~~~---------g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p 554 (605)
-+|..+..|..++.+++.. .+-.+|.+.-+++++++|.|+.++..+|.++...++++.|+..|++|+.++|
T Consensus 290 ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~P 369 (458)
T PRK11906 290 IQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHST 369 (458)
T ss_pred CCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCC
Confidence 3567788888888888664 2456889999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHH
Q 007401 555 KNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAA 593 (605)
Q Consensus 555 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 593 (605)
+++.+|+..|.++...|+.++|.+.++++++++|.-..+
T Consensus 370 n~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~ 408 (458)
T PRK11906 370 DIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKA 408 (458)
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHH
Confidence 999999999999999999999999999999999976543
No 146
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.48 E-value=3.5e-07 Score=96.86 Aligned_cols=111 Identities=16% Similarity=0.099 Sum_probs=94.1
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 007401 489 SELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTARE 568 (605)
Q Consensus 489 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 568 (605)
+.+.+.+|...+..++|.++.++++..++++|-....|+++|.|..++++++.|.++|.+++.++|++..+|+|++-+|.
T Consensus 485 arA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi 564 (777)
T KOG1128|consen 485 ARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYI 564 (777)
T ss_pred HHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHH
Confidence 34445556666777899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 007401 569 ALFCYNEALQDFKHAMVLEPQNKAANLAEKR 599 (605)
Q Consensus 569 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~ 599 (605)
..++..+|...++++++.+-++...+.+...
T Consensus 565 ~~~~k~ra~~~l~EAlKcn~~~w~iWENyml 595 (777)
T KOG1128|consen 565 RLKKKKRAFRKLKEALKCNYQHWQIWENYML 595 (777)
T ss_pred HHhhhHHHHHHHHHHhhcCCCCCeeeechhh
Confidence 9999999999999999988766665554443
No 147
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.48 E-value=6.8e-06 Score=76.94 Aligned_cols=112 Identities=12% Similarity=0.044 Sum_probs=70.0
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcc
Q 007401 492 LKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREALF 571 (605)
Q Consensus 492 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 571 (605)
....|..+...|+|++|+++|+..++-+|.+...+...-.+...+|.-.+|++.+...++..+++.++|..++.+|...|
T Consensus 89 ~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~ 168 (289)
T KOG3060|consen 89 GKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEG 168 (289)
T ss_pred HHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHh
Confidence 33445556666666666666666666666666666555555555666666666666666666666666666666666666
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 007401 572 CYNEALQDFKHAMVLEPQNKAANLAEKRLRKL 603 (605)
Q Consensus 572 ~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~ 603 (605)
+|++|.-|+++.+-+.|.++.....++.++..
T Consensus 169 ~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt 200 (289)
T KOG3060|consen 169 DFEKAAFCLEELLLIQPFNPLYFQRLAEVLYT 200 (289)
T ss_pred HHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Confidence 66666666666666666666666555555443
No 148
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.46 E-value=2.1e-06 Score=91.59 Aligned_cols=118 Identities=20% Similarity=0.124 Sum_probs=111.7
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 007401 488 ASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAR 567 (605)
Q Consensus 488 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 567 (605)
.-..|...+..+.+.++-++|..++.++-+++|..+..|+.+|.++...+++.+|.+.|..|+.+||+++.....+|.++
T Consensus 649 ~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~l 728 (799)
T KOG4162|consen 649 LQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELL 728 (799)
T ss_pred HHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHH
Confidence 34677788888888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHccCHHHHHH--HHHHHHHhCCCCHHHHHHHHHHHHhhC
Q 007401 568 EALFCYNEALQ--DFKHAMVLEPQNKAANLAEKRLRKLIG 605 (605)
Q Consensus 568 ~~~g~~~~A~~--~~~~al~~~p~~~~~~~~~~~~~~~~g 605 (605)
.+.|+...|.. .+..+++++|.+..+|++++.+..+.|
T Consensus 729 le~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~G 768 (799)
T KOG4162|consen 729 LELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLG 768 (799)
T ss_pred HHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcc
Confidence 99999988888 999999999999999999999998876
No 149
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=98.45 E-value=1.5e-06 Score=94.87 Aligned_cols=119 Identities=17% Similarity=0.120 Sum_probs=108.6
Q ss_pred ChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-HHHH
Q 007401 485 SIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGT---SATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKN-VKAY 560 (605)
Q Consensus 485 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~ 560 (605)
++..+..+.-+++.+|-.|+|+.+...++-++....+ -++.+|.+|.+|+.+|+|++|..+|.++++.++++ .-.+
T Consensus 266 n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~ 345 (1018)
T KOG2002|consen 266 NNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPL 345 (1018)
T ss_pred cCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccc
Confidence 3455778889999999999999999999999987644 35679999999999999999999999999999998 7789
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 007401 561 LRRGTAREALFCYNEALQDFKHAMVLEPQNKAANLAEKRLRKL 603 (605)
Q Consensus 561 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~ 603 (605)
+-+|+.|...|+++.|..+|++.++..|++......++.++..
T Consensus 346 ~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~ 388 (1018)
T KOG2002|consen 346 VGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAH 388 (1018)
T ss_pred cchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHh
Confidence 9999999999999999999999999999999999999988764
No 150
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.44 E-value=3.2e-06 Score=81.80 Aligned_cols=101 Identities=17% Similarity=0.067 Sum_probs=89.8
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccC---HHHHHHHH
Q 007401 504 QWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREALFC---YNEALQDF 580 (605)
Q Consensus 504 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~---~~~A~~~~ 580 (605)
+.++-+.-++.-+..+|+|.+-|..+|.+|+.++++..|...|.+|+++.|+|++.+.-+|.++..+.+ ..++.+.|
T Consensus 137 ~~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll 216 (287)
T COG4235 137 EMEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALL 216 (287)
T ss_pred cHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHH
Confidence 455667778888999999999999999999999999999999999999999999999999998766543 57899999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHhh
Q 007401 581 KHAMVLEPQNKAANLAEKRLRKLI 604 (605)
Q Consensus 581 ~~al~~~p~~~~~~~~~~~~~~~~ 604 (605)
+++++++|.|..+...++..+...
T Consensus 217 ~~al~~D~~~iral~lLA~~afe~ 240 (287)
T COG4235 217 RQALALDPANIRALSLLAFAAFEQ 240 (287)
T ss_pred HHHHhcCCccHHHHHHHHHHHHHc
Confidence 999999999999999988766543
No 151
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.43 E-value=1e-06 Score=90.87 Aligned_cols=117 Identities=15% Similarity=0.042 Sum_probs=110.1
Q ss_pred ChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 007401 485 SIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRG 564 (605)
Q Consensus 485 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la 564 (605)
.|+.+..|+..|-.|+..+++.+|..+|.|+..++|.+..+|...|..+...++.++|+.+|..|-++-|..-...+++|
T Consensus 308 yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlg 387 (611)
T KOG1173|consen 308 YPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLG 387 (611)
T ss_pred CCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHH
Confidence 45667789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 007401 565 TAREALFCYNEALQDFKHAMVLEPQNKAANLAEKRLR 601 (605)
Q Consensus 565 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 601 (605)
.-|.++++++.|.+.|.+|+.+.|.|+.....++.+.
T Consensus 388 mey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvva 424 (611)
T KOG1173|consen 388 MEYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVA 424 (611)
T ss_pred HHHHHhccHHHHHHHHHHHHhcCCCcchhhhhhhhee
Confidence 9999999999999999999999999999888777643
No 152
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=98.43 E-value=2.7e-06 Score=90.04 Aligned_cols=118 Identities=12% Similarity=-0.053 Sum_probs=99.4
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHH--HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH--HHHHH
Q 007401 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYY--SNRAAAYLELGCFQQAEEDCSKTISLDKKNV--KAYLR 562 (605)
Q Consensus 487 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~--~~la~~~~~~~~~~~A~~~~~~al~~~p~~~--~~~~~ 562 (605)
+....+..++..+...|++++|++.++++++..|++.... ..+....+..++.+++++.++++++.+|+++ ..+..
T Consensus 261 ~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~s 340 (409)
T TIGR00540 261 HNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRA 340 (409)
T ss_pred CCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHH
Confidence 4678899999999999999999999999999999987532 2333334456888999999999999999999 88999
Q ss_pred HHHHHHHccCHHHHHHHHH--HHHHhCCCCHHHHHHHHHHHHhhC
Q 007401 563 RGTAREALFCYNEALQDFK--HAMVLEPQNKAANLAEKRLRKLIG 605 (605)
Q Consensus 563 la~~~~~~g~~~~A~~~~~--~al~~~p~~~~~~~~~~~~~~~~g 605 (605)
+|.++++.|++++|.++|+ ++++.+|++.. ...++.++..+|
T Consensus 341 Lg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~-~~~La~ll~~~g 384 (409)
T TIGR00540 341 LGQLLMKHGEFIEAADAFKNVAACKEQLDAND-LAMAADAFDQAG 384 (409)
T ss_pred HHHHHHHcccHHHHHHHHHHhHHhhcCCCHHH-HHHHHHHHHHcC
Confidence 9999999999999999999 68888887766 447788777654
No 153
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.42 E-value=2.2e-06 Score=69.08 Aligned_cols=80 Identities=30% Similarity=0.363 Sum_probs=73.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhh
Q 007401 525 YYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAANLAEKRLRKLI 604 (605)
Q Consensus 525 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~ 604 (605)
+++.+|.++...+++++|+..++++++..|++..+++.+|.++...+++++|++.|+++++..|.+...+..++.++...
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999988887777766543
No 154
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.41 E-value=3.1e-06 Score=94.76 Aligned_cols=121 Identities=12% Similarity=-0.045 Sum_probs=101.0
Q ss_pred CCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH---
Q 007401 481 DTNGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNV--- 557 (605)
Q Consensus 481 ~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~--- 557 (605)
.....+....+|..+...+...+++++|+..++++++..|+...+|+.+|.++++.+++.++... +++...+.+.
T Consensus 23 ~~~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~ 100 (906)
T PRK14720 23 ANNYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWA 100 (906)
T ss_pred cccCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchh
Confidence 34456778889999999999999999999999999999999999999999998888887776654 5555555444
Q ss_pred ----------------HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 007401 558 ----------------KAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAANLAEKRLRKL 603 (605)
Q Consensus 558 ----------------~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~ 603 (605)
.+++.+|.||.++|++++|...|+++++++|+|+.+..+++..+..
T Consensus 101 ~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae 162 (906)
T PRK14720 101 IVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEE 162 (906)
T ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHH
Confidence 7999999999999999999999999999999999998888876643
No 155
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.40 E-value=2.1e-06 Score=79.19 Aligned_cols=86 Identities=15% Similarity=0.138 Sum_probs=77.0
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHH
Q 007401 519 NGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKN---VKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAANL 595 (605)
Q Consensus 519 ~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 595 (605)
.+..+..++++|..+...+++++|+.+|++++++.|+. ..+++++|.++..+|++++|+..|+++++.+|++...+.
T Consensus 31 ~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 110 (172)
T PRK02603 31 KAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALN 110 (172)
T ss_pred HhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHH
Confidence 34567889999999999999999999999999987653 469999999999999999999999999999999999988
Q ss_pred HHHHHHHhh
Q 007401 596 AEKRLRKLI 604 (605)
Q Consensus 596 ~~~~~~~~~ 604 (605)
.++.++..+
T Consensus 111 ~lg~~~~~~ 119 (172)
T PRK02603 111 NIAVIYHKR 119 (172)
T ss_pred HHHHHHHHc
Confidence 888877654
No 156
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.40 E-value=2.2e-06 Score=89.75 Aligned_cols=116 Identities=12% Similarity=0.046 Sum_probs=60.8
Q ss_pred ChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 007401 485 SIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRG 564 (605)
Q Consensus 485 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la 564 (605)
.+++.+.+...|..+...|+-++|.++...++..++.+.-+|.-+|.++..-.+|++|+++|+.|++++|+|.+.|.-++
T Consensus 37 ~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDls 116 (700)
T KOG1156|consen 37 FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLS 116 (700)
T ss_pred CCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence 34444455555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 007401 565 TAREALFCYNEALQDFKHAMVLEPQNKAANLAEKRL 600 (605)
Q Consensus 565 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 600 (605)
..+.++++|+-....-.+.+++.|.....|...+..
T Consensus 117 lLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs 152 (700)
T KOG1156|consen 117 LLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVA 152 (700)
T ss_pred HHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 555555555555555555555555554444444433
No 157
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.38 E-value=9.4e-06 Score=78.93 Aligned_cols=113 Identities=16% Similarity=0.190 Sum_probs=102.7
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 007401 488 ASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAR 567 (605)
Q Consensus 488 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 567 (605)
....+..+...++-.|++..|+++....+++.|=++..+..++.||...|+...|+.+++.+-++..+|.+.+|..+.++
T Consensus 154 e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~ 233 (504)
T KOG0624|consen 154 EHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLL 233 (504)
T ss_pred HHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHH
Confidence 34556667777888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 007401 568 EALFCYNEALQDFKHAMVLEPQNKAANLAEKRL 600 (605)
Q Consensus 568 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 600 (605)
+..|+.+.++...+++|+++|++...+-.+..+
T Consensus 234 Y~vgd~~~sL~~iRECLKldpdHK~Cf~~YKkl 266 (504)
T KOG0624|consen 234 YTVGDAENSLKEIRECLKLDPDHKLCFPFYKKL 266 (504)
T ss_pred HhhhhHHHHHHHHHHHHccCcchhhHHHHHHHH
Confidence 999999999999999999999987655444443
No 158
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.37 E-value=1.7e-05 Score=70.82 Aligned_cols=118 Identities=20% Similarity=0.068 Sum_probs=97.5
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---HHHH
Q 007401 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTS---ATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKN---VKAY 560 (605)
Q Consensus 487 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~ 560 (605)
+.+...+......+..+++.++...+++.++-+|+. ..+...+|.+++..|++++|+..|++++...|+. ..+.
T Consensus 9 ~~a~~~y~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~ 88 (145)
T PF09976_consen 9 EQASALYEQALQALQAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLAR 88 (145)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHH
Confidence 345556666777778999999999999999999988 6778889999999999999999999999987654 4589
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhhC
Q 007401 561 LRRGTAREALFCYNEALQDFKHAMVLEPQNKAANLAEKRLRKLIG 605 (605)
Q Consensus 561 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g 605 (605)
++++.++...|++++|+..++.. .-.+-.+.+....+.++...|
T Consensus 89 l~LA~~~~~~~~~d~Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g 132 (145)
T PF09976_consen 89 LRLARILLQQGQYDEALATLQQI-PDEAFKALAAELLGDIYLAQG 132 (145)
T ss_pred HHHHHHHHHcCCHHHHHHHHHhc-cCcchHHHHHHHHHHHHHHCC
Confidence 99999999999999999999763 333444667777787777654
No 159
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.36 E-value=1.1e-06 Score=69.26 Aligned_cols=66 Identities=20% Similarity=0.391 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 007401 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLN-------GTSATYYSNRAAAYLELGCFQQAEEDCSKTISL 552 (605)
Q Consensus 487 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 552 (605)
..+..+.++|.++...|+|++|+.+|++++++. +..+..+.++|.++..+|++++|++++++++++
T Consensus 3 ~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 3 DTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 445666777777777777777777777776541 112455666677777777777777777666654
No 160
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.33 E-value=7.6e-06 Score=85.04 Aligned_cols=117 Identities=13% Similarity=0.010 Sum_probs=85.7
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH-------------------------------------HHHHHHHH
Q 007401 489 SELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSA-------------------------------------TYYSNRAA 531 (605)
Q Consensus 489 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~-------------------------------------~~~~~la~ 531 (605)
.+.....+..++..|++++|++.++++++.+|++. ..+..+|.
T Consensus 43 ~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~ 122 (355)
T cd05804 43 RERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKLHLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAF 122 (355)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHhHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHH
Confidence 33444556666666666666666666665555543 34456677
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHhhC
Q 007401 532 AYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKA----ANLAEKRLRKLIG 605 (605)
Q Consensus 532 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~----~~~~~~~~~~~~g 605 (605)
++...|++++|++.++++++++|+++.++..+|.++.+.|++++|+..+++++...|.+.. .+..++.++...|
T Consensus 123 ~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G 200 (355)
T cd05804 123 GLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERG 200 (355)
T ss_pred HHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCC
Confidence 8888899999999999999999999999999999999999999999999999988775432 3445666665543
No 161
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.33 E-value=6.4e-06 Score=70.49 Aligned_cols=82 Identities=20% Similarity=0.103 Sum_probs=73.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---HHHHHH
Q 007401 523 ATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKN---VKAYLRRGTAREALFCYNEALQDFKHAMVLEPQN---KAANLA 596 (605)
Q Consensus 523 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~ 596 (605)
+..++.+|..+...+++++|++.|+++++.+|++ ..+++.+|.++...|++++|+..|++++..+|++ ..++..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 81 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK 81 (119)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence 4678999999999999999999999999999876 5799999999999999999999999999999886 567777
Q ss_pred HHHHHHhh
Q 007401 597 EKRLRKLI 604 (605)
Q Consensus 597 ~~~~~~~~ 604 (605)
++.++..+
T Consensus 82 ~~~~~~~~ 89 (119)
T TIGR02795 82 LGMSLQEL 89 (119)
T ss_pred HHHHHHHh
Confidence 77776654
No 162
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=98.31 E-value=1.9e-05 Score=83.64 Aligned_cols=107 Identities=12% Similarity=0.024 Sum_probs=88.2
Q ss_pred hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 007401 486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSA-TYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRG 564 (605)
Q Consensus 486 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la 564 (605)
+.....+...|..+.++|++++|.++|+++.+..|++. .+...++.++++.+++++|.+.+++..+.+|+++.++..++
T Consensus 115 ~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~ 194 (409)
T TIGR00540 115 AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAE 194 (409)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 33455666778888889999999999999888888874 46666788888899999999999999999999999999999
Q ss_pred HHHHHccCHHHHHHHHHHHHHhCCCCHH
Q 007401 565 TAREALFCYNEALQDFKHAMVLEPQNKA 592 (605)
Q Consensus 565 ~~~~~~g~~~~A~~~~~~al~~~p~~~~ 592 (605)
.++.+.|++++|.+.+++.++....+..
T Consensus 195 ~~~~~~~d~~~a~~~l~~l~k~~~~~~~ 222 (409)
T TIGR00540 195 EAYIRSGAWQALDDIIDNMAKAGLFDDE 222 (409)
T ss_pred HHHHHHhhHHHHHHHHHHHHHcCCCCHH
Confidence 9999999999999999888887554443
No 163
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.30 E-value=5.5e-06 Score=85.48 Aligned_cols=95 Identities=15% Similarity=0.113 Sum_probs=88.8
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Q 007401 491 LLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREAL 570 (605)
Q Consensus 491 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 570 (605)
....++..+...++..+|++.++++++..|.+...+...+..+++.++++.|++..++++++.|++...|+.++.+|.++
T Consensus 202 v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~ 281 (395)
T PF09295_consen 202 VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQL 281 (395)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc
Confidence 45567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCHHHHHHHHHHHHH
Q 007401 571 FCYNEALQDFKHAMV 585 (605)
Q Consensus 571 g~~~~A~~~~~~al~ 585 (605)
|++++|+..++.+-.
T Consensus 282 ~d~e~ALlaLNs~Pm 296 (395)
T PF09295_consen 282 GDFENALLALNSCPM 296 (395)
T ss_pred CCHHHHHHHHhcCcC
Confidence 999999988875543
No 164
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.29 E-value=3.9e-05 Score=68.54 Aligned_cols=113 Identities=17% Similarity=0.134 Sum_probs=98.1
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--CHHHHHHHHH
Q 007401 489 SELLKEKGNAAFKGKQWNKAVNYYSEAIK-LNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKK--NVKAYLRRGT 565 (605)
Q Consensus 489 a~~~~~~g~~~~~~g~~~~A~~~~~~al~-~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~la~ 565 (605)
.+..+.+|+.+.+.|++.||...|++++. +.-+++..+..++++.+..+++..|...+++..+.+|. .+.....+|.
T Consensus 89 vqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR 168 (251)
T COG4700 89 VQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFAR 168 (251)
T ss_pred HHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHHH
Confidence 56678899999999999999999999986 56788999999999999999999999999999999985 5788999999
Q ss_pred HHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 007401 566 AREALFCYNEALQDFKHAMVLEPQNKAANLAEKRLRK 602 (605)
Q Consensus 566 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 602 (605)
+|...|++++|...|+.++...|+- .+.......+.
T Consensus 169 ~laa~g~~a~Aesafe~a~~~ypg~-~ar~~Y~e~La 204 (251)
T COG4700 169 TLAAQGKYADAESAFEVAISYYPGP-QARIYYAEMLA 204 (251)
T ss_pred HHHhcCCchhHHHHHHHHHHhCCCH-HHHHHHHHHHH
Confidence 9999999999999999999999864 34333344333
No 165
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.29 E-value=7.5e-06 Score=88.24 Aligned_cols=72 Identities=17% Similarity=0.051 Sum_probs=66.4
Q ss_pred hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH
Q 007401 486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVK 558 (605)
Q Consensus 486 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~ 558 (605)
+..+..+..+|..+...|++++|...|++++.++| +..+|..+|.++...|++++|++.|++|++++|.++.
T Consensus 417 ~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 417 NVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred cCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence 34457788889999999999999999999999999 5899999999999999999999999999999999885
No 166
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.28 E-value=9.9e-07 Score=69.61 Aligned_cols=68 Identities=25% Similarity=0.352 Sum_probs=58.0
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC----CC---CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Q 007401 520 GTSATYYSNRAAAYLELGCFQQAEEDCSKTISLD----KK---NVKAYLRRGTAREALFCYNEALQDFKHAMVLE 587 (605)
Q Consensus 520 p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~----p~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 587 (605)
|+-+.++.++|.+|..+|+|++|+++|++++++. ++ -..+++++|.++..+|++++|++++++++++.
T Consensus 2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~ 76 (78)
T PF13424_consen 2 PDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIF 76 (78)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 3446789999999999999999999999999762 12 25689999999999999999999999999863
No 167
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.27 E-value=6e-06 Score=79.78 Aligned_cols=120 Identities=12% Similarity=0.027 Sum_probs=108.1
Q ss_pred CCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHH
Q 007401 481 DTNGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAY 560 (605)
Q Consensus 481 ~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 560 (605)
..+..|.+.-.+..++.++...+++++|+++|+.+++.+|.|.++....|.-|+.-++.+-|+.+|++.+++.-.+++.+
T Consensus 282 gld~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf 361 (478)
T KOG1129|consen 282 GLDSFPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELF 361 (478)
T ss_pred hhhcCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHH
Confidence 34556788899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhCCC---CHHHHHHHHHH
Q 007401 561 LRRGTAREALFCYNEALQDFKHAMVLEPQ---NKAANLAEKRL 600 (605)
Q Consensus 561 ~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~~~~~ 600 (605)
+++|.|.+..++++-++.+|++++....+ ...+|++++.+
T Consensus 362 ~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~v 404 (478)
T KOG1129|consen 362 CNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFV 404 (478)
T ss_pred hhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhcccee
Confidence 99999999999999999999999987542 25667766654
No 168
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.26 E-value=1.3e-05 Score=80.38 Aligned_cols=102 Identities=18% Similarity=-0.002 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 007401 489 SELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTARE 568 (605)
Q Consensus 489 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 568 (605)
.+++++.|..+..+|+.++|+++|-+.-.+--+++++++.++.+|-.+.+..+|++.|.++..+-|++|..+..+|.+|-
T Consensus 524 ~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~dlyd 603 (840)
T KOG2003|consen 524 TEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYD 603 (840)
T ss_pred HHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhh
Confidence 34444444444444444444444444443333444444444444444444444444444444444444444444444444
Q ss_pred HccCHHHHHHHHHHHHHhCCCC
Q 007401 569 ALFCYNEALQDFKHAMVLEPQN 590 (605)
Q Consensus 569 ~~g~~~~A~~~~~~al~~~p~~ 590 (605)
+.|+..+|.+|+-...+..|-|
T Consensus 604 qegdksqafq~~ydsyryfp~n 625 (840)
T KOG2003|consen 604 QEGDKSQAFQCHYDSYRYFPCN 625 (840)
T ss_pred cccchhhhhhhhhhcccccCcc
Confidence 4444443333333333333333
No 169
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.22 E-value=1.5e-05 Score=84.62 Aligned_cols=105 Identities=18% Similarity=0.212 Sum_probs=92.7
Q ss_pred CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-
Q 007401 483 NGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLN--------GTSATYYSNRAAAYLELGCFQQAEEDCSKTISLD- 553 (605)
Q Consensus 483 ~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~- 553 (605)
..++.-+..+.++|..|.+.|+|++|..++++++++. |+-+..+.+++.++..++++++|+..+++++++.
T Consensus 277 ~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~ 356 (508)
T KOG1840|consen 277 EDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYL 356 (508)
T ss_pred CCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHH
Confidence 4567889999999999999999999999999999863 3346678899999999999999999999998873
Q ss_pred ----CCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Q 007401 554 ----KKN---VKAYLRRGTAREALFCYNEALQDFKHAMVLE 587 (605)
Q Consensus 554 ----p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 587 (605)
+++ +..+.++|.+|+.+|+|++|.+.|++++++.
T Consensus 357 ~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~ 397 (508)
T KOG1840|consen 357 DAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQIL 397 (508)
T ss_pred hhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Confidence 233 5689999999999999999999999999886
No 170
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.20 E-value=3.5e-05 Score=79.63 Aligned_cols=105 Identities=12% Similarity=0.023 Sum_probs=96.4
Q ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHH
Q 007401 498 AAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEAL 577 (605)
Q Consensus 498 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 577 (605)
.+...+++++|++.+++..+.+|+ +...++.++...++..+|++.++++++.+|++...+...+..+...++++.|+
T Consensus 178 ~l~~t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lAL 254 (395)
T PF09295_consen 178 YLSLTQRYDEAIELLEKLRERDPE---VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYELAL 254 (395)
T ss_pred HHhhcccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHH
Confidence 334567899999999999988765 66678999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHhhC
Q 007401 578 QDFKHAMVLEPQNKAANLAEKRLRKLIG 605 (605)
Q Consensus 578 ~~~~~al~~~p~~~~~~~~~~~~~~~~g 605 (605)
+..+++.++.|++...|..++.+|..+|
T Consensus 255 ~iAk~av~lsP~~f~~W~~La~~Yi~~~ 282 (395)
T PF09295_consen 255 EIAKKAVELSPSEFETWYQLAECYIQLG 282 (395)
T ss_pred HHHHHHHHhCchhHHHHHHHHHHHHhcC
Confidence 9999999999999999999999998765
No 171
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=98.19 E-value=2.5e-05 Score=82.37 Aligned_cols=101 Identities=12% Similarity=0.026 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 007401 488 ASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAR 567 (605)
Q Consensus 488 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 567 (605)
+...+...+..+...|+.++|.+.++++++ .+.+......++.+ ..++++++++.+++.++.+|+++..++.+|.++
T Consensus 262 ~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~-~~~~~~l~~l~~~l--~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~ 338 (398)
T PRK10747 262 QVALQVAMAEHLIECDDHDTAQQIILDGLK-RQYDERLVLLIPRL--KTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLL 338 (398)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHh-cCCCHHHHHHHhhc--cCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Confidence 345555556666666666666666666655 23333333333333 235566666666666666666666666666666
Q ss_pred HHccCHHHHHHHHHHHHHhCCCCH
Q 007401 568 EALFCYNEALQDFKHAMVLEPQNK 591 (605)
Q Consensus 568 ~~~g~~~~A~~~~~~al~~~p~~~ 591 (605)
...+++++|.++|+++++.+|++.
T Consensus 339 ~~~~~~~~A~~~le~al~~~P~~~ 362 (398)
T PRK10747 339 MKHGEWQEASLAFRAALKQRPDAY 362 (398)
T ss_pred HHCCCHHHHHHHHHHHHhcCCCHH
Confidence 666666666666666666655543
No 172
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.18 E-value=3.6e-05 Score=72.99 Aligned_cols=121 Identities=18% Similarity=0.057 Sum_probs=93.9
Q ss_pred ChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcC-----------CHHHHHHHHHHHH
Q 007401 485 SIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTS---ATYYSNRAAAYLELG-----------CFQQAEEDCSKTI 550 (605)
Q Consensus 485 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~-----------~~~~A~~~~~~al 550 (605)
.+-..+.++.+|..+++.|+|++|+..|++.++..|++ ..+++.+|.+++.+. ...+|+..|+..+
T Consensus 38 s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li 117 (203)
T PF13525_consen 38 SPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELI 117 (203)
T ss_dssp STTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHH
Confidence 34556788899999999999999999999999999986 568999999987653 2468999999999
Q ss_pred hcCCCCHH-----------------HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHhhC
Q 007401 551 SLDKKNVK-----------------AYLRRGTAREALFCYNEALQDFKHAMVLEPQNKA---ANLAEKRLRKLIG 605 (605)
Q Consensus 551 ~~~p~~~~-----------------~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~---~~~~~~~~~~~~g 605 (605)
+..|++.. --+..|.-|++.|.|..|+..++.+++..|+... ++..+...+..+|
T Consensus 118 ~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~ 192 (203)
T PF13525_consen 118 KRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLG 192 (203)
T ss_dssp HH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT
T ss_pred HHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhC
Confidence 99998732 2344788899999999999999999999998864 4555555555543
No 173
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=98.16 E-value=6.3e-05 Score=79.31 Aligned_cols=107 Identities=10% Similarity=-0.031 Sum_probs=91.5
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 007401 489 SELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYY-SNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAR 567 (605)
Q Consensus 489 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~-~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 567 (605)
.-.+...+....+.|++++|.++|+++.+.+|++.... ...+..+...|++++|.+.+++..+.+|+++.++..++.+|
T Consensus 118 ~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~ 197 (398)
T PRK10747 118 VVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAY 197 (398)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 34455556676999999999999999999999885443 45599999999999999999999999999999999999999
Q ss_pred HHccCHHHHHHHHHHHHHhCCCCHHHHH
Q 007401 568 EALFCYNEALQDFKHAMVLEPQNKAANL 595 (605)
Q Consensus 568 ~~~g~~~~A~~~~~~al~~~p~~~~~~~ 595 (605)
.+.|++++|++.+.+..+....+.....
T Consensus 198 ~~~gdw~~a~~~l~~l~k~~~~~~~~~~ 225 (398)
T PRK10747 198 IRTGAWSSLLDILPSMAKAHVGDEEHRA 225 (398)
T ss_pred HHHHhHHHHHHHHHHHHHcCCCCHHHHH
Confidence 9999999999999999988776654433
No 174
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.16 E-value=1.1e-05 Score=84.59 Aligned_cols=113 Identities=17% Similarity=0.138 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Q 007401 491 LLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREAL 570 (605)
Q Consensus 491 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 570 (605)
.++....-.+..++|.+.++..++.++..|++.+.+...|..+..+|+-++|....+.+++.|+.+...|..+|.++...
T Consensus 9 ~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~d 88 (700)
T KOG1156|consen 9 ALFRRALKCYETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSD 88 (700)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhh
Confidence 34444555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 007401 571 FCYNEALQDFKHAMVLEPQNKAANLAEKRLRKL 603 (605)
Q Consensus 571 g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~ 603 (605)
++|++|++||+.|++++|+|..++..+..++.+
T Consensus 89 K~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~Q 121 (700)
T KOG1156|consen 89 KKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQ 121 (700)
T ss_pred hhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 555555555555555555555555555544443
No 175
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=98.15 E-value=2.5e-05 Score=82.05 Aligned_cols=117 Identities=14% Similarity=0.031 Sum_probs=106.9
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 007401 489 SELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTARE 568 (605)
Q Consensus 489 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 568 (605)
...|+..++....+++.++|+.+++++++..|++..+|..+|+++.++++.+.|.+.|.+.++..|+.+..|..++.+-.
T Consensus 651 eRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleE 730 (913)
T KOG0495|consen 651 ERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEE 730 (913)
T ss_pred chhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHH
Confidence 46777888888889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhhC
Q 007401 569 ALFCYNEALQDFKHAMVLEPQNKAANLAEKRLRKLIG 605 (605)
Q Consensus 569 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g 605 (605)
..|+.-.|...++++.-.+|++...|...-++..+.|
T Consensus 731 k~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~g 767 (913)
T KOG0495|consen 731 KDGQLVRARSILDRARLKNPKNALLWLESIRMELRAG 767 (913)
T ss_pred HhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcC
Confidence 9999999999999999999999988877766665543
No 176
>PRK15331 chaperone protein SicA; Provisional
Probab=98.13 E-value=1.1e-05 Score=71.52 Aligned_cols=90 Identities=11% Similarity=-0.000 Sum_probs=82.7
Q ss_pred HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHH
Q 007401 516 IKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAANL 595 (605)
Q Consensus 516 l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 595 (605)
..+.++.-+..+..|.-+++.|++++|...|+-...+||.|++.|+.+|.|+..+++|++|+..|..+..++++|+...+
T Consensus 30 ~gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f 109 (165)
T PRK15331 30 HGIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVF 109 (165)
T ss_pred hCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccc
Confidence 34455667788999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhC
Q 007401 596 AEKRLRKLIG 605 (605)
Q Consensus 596 ~~~~~~~~~g 605 (605)
+.+.|+..+|
T Consensus 110 ~agqC~l~l~ 119 (165)
T PRK15331 110 FTGQCQLLMR 119 (165)
T ss_pred hHHHHHHHhC
Confidence 9999887764
No 177
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.13 E-value=1.6e-05 Score=84.42 Aligned_cols=104 Identities=13% Similarity=0.094 Sum_probs=91.4
Q ss_pred CChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--
Q 007401 484 GSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKL--------NGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLD-- 553 (605)
Q Consensus 484 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-- 553 (605)
..|........++..|+.+|+|++|+..+++++.. .|.-......+|..|..+++|.+|+..|++|+.+-
T Consensus 194 ~~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~ 273 (508)
T KOG1840|consen 194 EDPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREE 273 (508)
T ss_pred CCchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 34667777888999999999999999999999998 56667777789999999999999999999999872
Q ss_pred ---CCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Q 007401 554 ---KKN---VKAYLRRGTAREALFCYNEALQDFKHAMVLE 587 (605)
Q Consensus 554 ---p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 587 (605)
+++ ..++.++|.+|...|++++|..++++++++.
T Consensus 274 ~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~ 313 (508)
T KOG1840|consen 274 VFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIY 313 (508)
T ss_pred hcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHH
Confidence 333 5699999999999999999999999999875
No 178
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.09 E-value=0.00018 Score=77.26 Aligned_cols=49 Identities=22% Similarity=0.292 Sum_probs=35.5
Q ss_pred ChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 007401 485 SIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAY 533 (605)
Q Consensus 485 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 533 (605)
..+....+-.+|..+++.|++++|...|.+.|..+|+|...|..+..+.
T Consensus 34 I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~ 82 (517)
T PF12569_consen 34 ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEAL 82 (517)
T ss_pred CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHH
Confidence 3455667777888889999999999988888877777655544444443
No 179
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.07 E-value=8.2e-06 Score=65.36 Aligned_cols=61 Identities=20% Similarity=0.298 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 007401 488 ASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKT 549 (605)
Q Consensus 488 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a 549 (605)
+...++.+|.++++.|+|++|+..+++ .+.++.+....+.+|.|++++++|++|++.++++
T Consensus 24 ~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 24 NSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKALEKA 84 (84)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHhcC
Confidence 566788899999999999999999999 8888888899999999999999999999999875
No 180
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.06 E-value=0.00023 Score=69.26 Aligned_cols=153 Identities=12% Similarity=-0.010 Sum_probs=108.9
Q ss_pred CchhHHhHHHHHHh--HHHHHHhhhccCCCCCCCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC---HHH
Q 007401 451 GDKFLLDTVLDLYD--SLQEQVNIASNLVPLPDTNGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTS---ATY 525 (605)
Q Consensus 451 ~d~~ll~~a~~l~~--~~~e~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---~~~ 525 (605)
........+..... ...++++..+... ..-+..+-..+..+.+|..+++.++|++|+..|++.++.+|++ ..+
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~--~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a 108 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALD--NRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYV 108 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHH--HhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHH
Confidence 33444444444333 2344444444332 2223345556778899999999999999999999999998876 678
Q ss_pred HHHHHHHHHHcC---------------C---HHHHHHHHHHHHhcCCCCHH-----------------HHHHHHHHHHHc
Q 007401 526 YSNRAAAYLELG---------------C---FQQAEEDCSKTISLDKKNVK-----------------AYLRRGTAREAL 570 (605)
Q Consensus 526 ~~~la~~~~~~~---------------~---~~~A~~~~~~al~~~p~~~~-----------------~~~~la~~~~~~ 570 (605)
++.+|.+++.++ | ..+|++.+++.++..|+... --+..|.-|.+.
T Consensus 109 ~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~ 188 (243)
T PRK10866 109 LYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKR 188 (243)
T ss_pred HHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 999999875554 1 35788999999999998632 223467778999
Q ss_pred cCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHhhC
Q 007401 571 FCYNEALQDFKHAMVLEPQNK---AANLAEKRLRKLIG 605 (605)
Q Consensus 571 g~~~~A~~~~~~al~~~p~~~---~~~~~~~~~~~~~g 605 (605)
|+|.-|+.-++.+++..|+.. +++..+...+..+|
T Consensus 189 ~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg 226 (243)
T PRK10866 189 GAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQ 226 (243)
T ss_pred CchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcC
Confidence 999999999999999998764 55566666655443
No 181
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=98.06 E-value=0.00011 Score=69.75 Aligned_cols=110 Identities=19% Similarity=0.165 Sum_probs=94.7
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH---HHH
Q 007401 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTS---ATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNV---KAY 560 (605)
Q Consensus 487 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~ 560 (605)
..+..|++.|...++.|+|++|+..|+++....|.. ..+...++.++++.++|++|+...++-+++.|.++ .++
T Consensus 32 ~p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~ 111 (254)
T COG4105 32 LPASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAY 111 (254)
T ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHH
Confidence 357899999999999999999999999999988765 57889999999999999999999999999998775 488
Q ss_pred HHHHHHHHHccC--------HHHHHHHHHHHHHhCCCCHHHHHH
Q 007401 561 LRRGTAREALFC--------YNEALQDFKHAMVLEPQNKAANLA 596 (605)
Q Consensus 561 ~~la~~~~~~g~--------~~~A~~~~~~al~~~p~~~~~~~~ 596 (605)
|.+|.+++..=+ ..+|...|++.++..|+...+-..
T Consensus 112 YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA 155 (254)
T COG4105 112 YLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDA 155 (254)
T ss_pred HHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhH
Confidence 889998765422 567889999999999998654433
No 182
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.04 E-value=2.4e-05 Score=87.88 Aligned_cols=100 Identities=15% Similarity=0.077 Sum_probs=83.6
Q ss_pred ChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH-------------------HHHHHHHHHHHHcCCHHHHHHH
Q 007401 485 SIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSA-------------------TYYSNRAAAYLELGCFQQAEED 545 (605)
Q Consensus 485 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~-------------------~~~~~la~~~~~~~~~~~A~~~ 545 (605)
.|+....|+.+|..+++.++++++... .++...+.+. .+++.+|.||-++|++++|...
T Consensus 61 ~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~ 138 (906)
T PRK14720 61 HKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGV 138 (906)
T ss_pred CCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHH
Confidence 566677888888888888877766655 5555544444 8999999999999999999999
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Q 007401 546 CSKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLE 587 (605)
Q Consensus 546 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 587 (605)
|++++++||+|+.++.++|..|... +.++|++++.+|++..
T Consensus 139 yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~ 179 (906)
T PRK14720 139 WERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYRF 179 (906)
T ss_pred HHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHH
Confidence 9999999999999999999999988 9999999999988763
No 183
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.00 E-value=1.6e-05 Score=84.69 Aligned_cols=103 Identities=14% Similarity=0.140 Sum_probs=98.8
Q ss_pred ChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 007401 485 SIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRG 564 (605)
Q Consensus 485 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la 564 (605)
++-..+.|+..|-++.+.++++.|.++|...+.++|++.++|+|++.+|+.+++-.+|...+.+|++.+-++++.|-|.-
T Consensus 515 nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENym 594 (777)
T KOG1128|consen 515 NPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYM 594 (777)
T ss_pred CccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechh
Confidence 55667899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHccCHHHHHHHHHHHHHhC
Q 007401 565 TAREALFCYNEALQDFKHAMVLE 587 (605)
Q Consensus 565 ~~~~~~g~~~~A~~~~~~al~~~ 587 (605)
.+....|++++|++.|.+.+.+.
T Consensus 595 lvsvdvge~eda~~A~~rll~~~ 617 (777)
T KOG1128|consen 595 LVSVDVGEFEDAIKAYHRLLDLR 617 (777)
T ss_pred hhhhhcccHHHHHHHHHHHHHhh
Confidence 99999999999999999998764
No 184
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.99 E-value=3.6e-06 Score=82.11 Aligned_cols=98 Identities=29% Similarity=0.407 Sum_probs=92.1
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Q 007401 491 LLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREAL 570 (605)
Q Consensus 491 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 570 (605)
.....+...+..|.++.|++.|..+|.++|..+..|..++.++++++....|+++|..|++++|+...-|-.++.+...+
T Consensus 116 e~k~~A~eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rll 195 (377)
T KOG1308|consen 116 DKKVQASEALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLL 195 (377)
T ss_pred HHHHHHHHHhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHh
Confidence 44555777788999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCHHHHHHHHHHHHHhCC
Q 007401 571 FCYNEALQDFKHAMVLEP 588 (605)
Q Consensus 571 g~~~~A~~~~~~al~~~p 588 (605)
|++++|..++..+.+++=
T Consensus 196 g~~e~aa~dl~~a~kld~ 213 (377)
T KOG1308|consen 196 GNWEEAAHDLALACKLDY 213 (377)
T ss_pred hchHHHHHHHHHHHhccc
Confidence 999999999999999874
No 185
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.98 E-value=4.1e-05 Score=76.35 Aligned_cols=81 Identities=20% Similarity=0.149 Sum_probs=60.7
Q ss_pred CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHH
Q 007401 483 NGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLR 562 (605)
Q Consensus 483 ~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 562 (605)
..+++..+.+...|+.+...++.++|+-.|+.++.+.|...+.|..+-.+|+..+.+.+|....+.+++.-|++++++-.
T Consensus 328 ~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL 407 (564)
T KOG1174|consen 328 DSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTL 407 (564)
T ss_pred ccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhh
Confidence 34567788888999999999999999999999999999998999888888887777666665444444444444444443
Q ss_pred H
Q 007401 563 R 563 (605)
Q Consensus 563 l 563 (605)
+
T Consensus 408 ~ 408 (564)
T KOG1174|consen 408 F 408 (564)
T ss_pred h
Confidence 3
No 186
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.97 E-value=6.9e-06 Score=52.94 Aligned_cols=32 Identities=28% Similarity=0.281 Sum_probs=22.3
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHccCHHHHH
Q 007401 546 CSKTISLDKKNVKAYLRRGTAREALFCYNEAL 577 (605)
Q Consensus 546 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 577 (605)
|++||+++|+|+.+|+++|.+|...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 56677777777777777777777777776664
No 187
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=97.97 E-value=6.5e-05 Score=75.08 Aligned_cols=109 Identities=13% Similarity=0.089 Sum_probs=88.8
Q ss_pred HHHHHHHHHHHHCC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 007401 490 ELLKEKGNAAFKGK--QWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAR 567 (605)
Q Consensus 490 ~~~~~~g~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 567 (605)
-.....+++.+..| ++++|.-.|++..+..+.++..++.++.|++++|+|++|.+.+++++..+|+++.++.+++.+.
T Consensus 166 l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~ 245 (290)
T PF04733_consen 166 LTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCS 245 (290)
T ss_dssp HHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 33344455555555 6999999999988888889999999999999999999999999999999999999999999999
Q ss_pred HHccCH-HHHHHHHHHHHHhCCCCHHHHHHHH
Q 007401 568 EALFCY-NEALQDFKHAMVLEPQNKAANLAEK 598 (605)
Q Consensus 568 ~~~g~~-~~A~~~~~~al~~~p~~~~~~~~~~ 598 (605)
..+|+. +.+.+++++..+.+|+++.......
T Consensus 246 ~~~gk~~~~~~~~l~qL~~~~p~h~~~~~~~~ 277 (290)
T PF04733_consen 246 LHLGKPTEAAERYLSQLKQSNPNHPLVKDLAE 277 (290)
T ss_dssp HHTT-TCHHHHHHHHHCHHHTTTSHHHHHHHH
T ss_pred HHhCCChhHHHHHHHHHHHhCCCChHHHHHHH
Confidence 999998 6677788888889999887665543
No 188
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.97 E-value=0.0001 Score=62.81 Aligned_cols=81 Identities=19% Similarity=0.071 Sum_probs=68.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC---CHHHHHHH
Q 007401 524 TYYSNRAAAYLELGCFQQAEEDCSKTISLDKKN---VKAYLRRGTAREALFCYNEALQDFKHAMVLEPQ---NKAANLAE 597 (605)
Q Consensus 524 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~~ 597 (605)
.+++++|.++-.+|+.++|+..|++++...... ..++..+|.++..+|++++|+..+++.+...|+ +......+
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~ 81 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFL 81 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHH
Confidence 578999999999999999999999999986544 569999999999999999999999999999898 55565555
Q ss_pred HHHHHhh
Q 007401 598 KRLRKLI 604 (605)
Q Consensus 598 ~~~~~~~ 604 (605)
+.++..+
T Consensus 82 Al~L~~~ 88 (120)
T PF12688_consen 82 ALALYNL 88 (120)
T ss_pred HHHHHHC
Confidence 5554443
No 189
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.96 E-value=4.6e-05 Score=68.84 Aligned_cols=91 Identities=26% Similarity=0.290 Sum_probs=78.4
Q ss_pred hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 007401 486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGT 565 (605)
Q Consensus 486 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~ 565 (605)
......|.+.|.++.++++++.|++...++|+++|.+..++..+|.+|-++..|++|+.+|.+.++.+|..-++.-..++
T Consensus 131 e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek~eealeDyKki~E~dPs~~ear~~i~r 210 (271)
T KOG4234|consen 131 EERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEKYEEALEDYKKILESDPSRREAREAIAR 210 (271)
T ss_pred HHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcchHHHHHHHHh
Confidence 45677889999999999999999999999999999999999999999999999999999999999999988777666665
Q ss_pred HHHHccCHHHH
Q 007401 566 AREALFCYNEA 576 (605)
Q Consensus 566 ~~~~~g~~~~A 576 (605)
+--...+..+.
T Consensus 211 l~~~i~ernEk 221 (271)
T KOG4234|consen 211 LPPKINERNEK 221 (271)
T ss_pred cCHHHHHHHHH
Confidence 54444433333
No 190
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.95 E-value=1.7e-05 Score=54.65 Aligned_cols=40 Identities=25% Similarity=0.290 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 007401 525 YYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRG 564 (605)
Q Consensus 525 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la 564 (605)
++..+|..|..+|++++|++.|+++++.+|+|+.+|..+|
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La 42 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALA 42 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhh
Confidence 3444444444444444444444444444444444444444
No 191
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=97.95 E-value=0.00023 Score=76.41 Aligned_cols=99 Identities=16% Similarity=0.016 Sum_probs=92.9
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 007401 489 SELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTARE 568 (605)
Q Consensus 489 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 568 (605)
...++-++..|-..|++++|+++.+++|+..|...+.|+..|.++-..|++.+|.+.++.|-++|..+-......+..++
T Consensus 194 lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~L 273 (517)
T PF12569_consen 194 LWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLL 273 (517)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHH
Confidence 46678889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HccCHHHHHHHHHHHHHhC
Q 007401 569 ALFCYNEALQDFKHAMVLE 587 (605)
Q Consensus 569 ~~g~~~~A~~~~~~al~~~ 587 (605)
+.|+.++|.+.+..-.+.+
T Consensus 274 Ra~~~e~A~~~~~~Ftr~~ 292 (517)
T PF12569_consen 274 RAGRIEEAEKTASLFTRED 292 (517)
T ss_pred HCCCHHHHHHHHHhhcCCC
Confidence 9999999999988766544
No 192
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=97.94 E-value=2.5e-05 Score=85.54 Aligned_cols=118 Identities=21% Similarity=0.281 Sum_probs=92.8
Q ss_pred ChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHH------------------------------------HHH
Q 007401 485 SIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATY------------------------------------YSN 528 (605)
Q Consensus 485 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~------------------------------------~~~ 528 (605)
.+..+..|..+|..|...-+...|..+|.+|.++++.+.++ |..
T Consensus 488 d~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~ 567 (1238)
T KOG1127|consen 488 DVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQ 567 (1238)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhh
Confidence 45667888999999988779999999999999998877554 344
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 007401 529 RAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAANLAEKRLRK 602 (605)
Q Consensus 529 la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 602 (605)
+|..|.+.+++.+|+..++.+++.+|++...|.-+|.+|...|+|.-|++.|.++..++|.+....+-.+.+..
T Consensus 568 rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ec 641 (1238)
T KOG1127|consen 568 RGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMEC 641 (1238)
T ss_pred ccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHH
Confidence 55555566777778888888888888888888888888888888888888888888888887776665554443
No 193
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.91 E-value=7.9e-05 Score=74.41 Aligned_cols=111 Identities=12% Similarity=0.024 Sum_probs=100.3
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 007401 488 ASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAR 567 (605)
Q Consensus 488 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 567 (605)
.+.-|+--+..++..++|..|+.+-+|+|..+|.+..++...|..+.++++.++|+..|+.|+.+-|.....|.-+-.+|
T Consensus 299 ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsY 378 (564)
T KOG1174|consen 299 TASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSY 378 (564)
T ss_pred chhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHH
Confidence 35567777888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 007401 568 EALFCYNEALQDFKHAMVLEPQNKAANLAEK 598 (605)
Q Consensus 568 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 598 (605)
...|++++|...-+.+++.-|++...+..++
T Consensus 379 LA~~~~kEA~~~An~~~~~~~~sA~~LtL~g 409 (564)
T KOG1174|consen 379 LAQKRFKEANALANWTIRLFQNSARSLTLFG 409 (564)
T ss_pred HhhchHHHHHHHHHHHHHHhhcchhhhhhhc
Confidence 9999999988888888888888877766654
No 194
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=97.90 E-value=3.7e-05 Score=84.34 Aligned_cols=115 Identities=14% Similarity=0.097 Sum_probs=104.4
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 007401 489 SELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTARE 568 (605)
Q Consensus 489 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 568 (605)
-..|..+|..|.+.+++.+|+..|+.++..+|++..+|..+|.+|...|+|..|++.|.+|..++|.+....|..+....
T Consensus 562 k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ec 641 (1238)
T KOG1127|consen 562 KENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMEC 641 (1238)
T ss_pred HhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHH
Confidence 45677799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 007401 569 ALFCYNEALQDFKHAMVLEPQNKAANLAEKRLRKL 603 (605)
Q Consensus 569 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~ 603 (605)
.+|+|++|+..+++.++...........++.++.+
T Consensus 642 d~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir 676 (1238)
T KOG1127|consen 642 DNGKYKEALDALGLIIYAFSLERTGQNGLAESVIR 676 (1238)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 99999999999999988776666666666655443
No 195
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.90 E-value=0.00015 Score=71.18 Aligned_cols=108 Identities=12% Similarity=0.052 Sum_probs=81.0
Q ss_pred CchhHHhHHHHH-H--hHHHHHHhhhccCCCCCCCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC---CHH
Q 007401 451 GDKFLLDTVLDL-Y--DSLQEQVNIASNLVPLPDTNGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGT---SAT 524 (605)
Q Consensus 451 ~d~~ll~~a~~l-~--~~~~e~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~---~~~ 524 (605)
.+...+..+..+ . ....+++..+.... ..-++..-....++.+|..|+..|+|++|+..|+++++..|+ .++
T Consensus 141 ~e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl--~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~d 218 (263)
T PRK10803 141 DANTDYNAAIALVQDKSRQDDAIVAFQNFV--KKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAAD 218 (263)
T ss_pred CHHHHHHHHHHHHHhcCCHHHHHHHHHHHH--HHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhH
Confidence 445555555443 2 23445544443332 122223334578889999999999999999999999998887 488
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHH
Q 007401 525 YYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAY 560 (605)
Q Consensus 525 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 560 (605)
+++.+|.++..+|++++|.+.|+++++..|++..+-
T Consensus 219 Al~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a~ 254 (263)
T PRK10803 219 AMFKVGVIMQDKGDTAKAKAVYQQVIKKYPGTDGAK 254 (263)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHH
Confidence 999999999999999999999999999999887543
No 196
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=97.86 E-value=0.00014 Score=72.77 Aligned_cols=117 Identities=16% Similarity=0.011 Sum_probs=94.1
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 007401 489 SELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELG--CFQQAEEDCSKTISLDKKNVKAYLRRGTA 566 (605)
Q Consensus 489 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~--~~~~A~~~~~~al~~~p~~~~~~~~la~~ 566 (605)
.+.....-.++.+.++++.|.+.++++-+.+.++.-....-+++.+..| .+.+|...|+......+.++..++.++.|
T Consensus 131 lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~ 210 (290)
T PF04733_consen 131 LELLALAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVC 210 (290)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHH
Confidence 4555666778999999999999999998887776555555566666655 59999999999888888899999999999
Q ss_pred HHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhhC
Q 007401 567 REALFCYNEALQDFKHAMVLEPQNKAANLAEKRLRKLIG 605 (605)
Q Consensus 567 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g 605 (605)
+..+|+|++|.+.+++++..+|+++....++..+...+|
T Consensus 211 ~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~g 249 (290)
T PF04733_consen 211 HLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLG 249 (290)
T ss_dssp HHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT
T ss_pred HHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhC
Confidence 999999999999999999999999998888877665543
No 197
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=97.85 E-value=0.00018 Score=75.87 Aligned_cols=117 Identities=15% Similarity=0.050 Sum_probs=94.1
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH---------------------------------HHHHHHHHHHH
Q 007401 489 SELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSAT---------------------------------YYSNRAAAYLE 535 (605)
Q Consensus 489 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~---------------------------------~~~~la~~~~~ 535 (605)
-..|...+..++..|+-.+|...+.++++.+|++.+ +|+..+.....
T Consensus 584 e~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ 663 (913)
T KOG0495|consen 584 EILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERY 663 (913)
T ss_pred hhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHH
Confidence 345666666667777777777777777776666543 44555555666
Q ss_pred cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhhC
Q 007401 536 LGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAANLAEKRLRKLIG 605 (605)
Q Consensus 536 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g 605 (605)
+++.++|++.++++++..|.+.+.|+.+|+++.++++.+.|.+.|...++..|+....|..+.++..+.|
T Consensus 664 ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~ 733 (913)
T KOG0495|consen 664 LDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDG 733 (913)
T ss_pred hhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhc
Confidence 7889999999999999999999999999999999999999999999999999999999998888876643
No 198
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.79 E-value=5.5e-05 Score=52.10 Aligned_cols=43 Identities=26% Similarity=0.212 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 007401 557 VKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAANLAEKR 599 (605)
Q Consensus 557 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~ 599 (605)
|.+|+.+|.+|..+|++++|++.|+++++.+|+|..++..++.
T Consensus 1 p~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 1 PAAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 4689999999999999999999999999999999999988765
No 199
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=97.78 E-value=0.00032 Score=59.00 Aligned_cols=80 Identities=26% Similarity=0.247 Sum_probs=68.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHH
Q 007401 526 YSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQN----KAANLAEKRLR 601 (605)
Q Consensus 526 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~~~~~~ 601 (605)
+-..|......++.+.|++.|.+++.+.|+++.+|++++.++.-+|+.++|+..+++++++.... ..++.+.+.++
T Consensus 46 LEl~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~ly 125 (175)
T KOG4555|consen 46 LELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLY 125 (175)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHH
Confidence 34567788889999999999999999999999999999999999999999999999999997654 34566666666
Q ss_pred HhhC
Q 007401 602 KLIG 605 (605)
Q Consensus 602 ~~~g 605 (605)
...|
T Consensus 126 Rl~g 129 (175)
T KOG4555|consen 126 RLLG 129 (175)
T ss_pred HHhC
Confidence 6554
No 200
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.78 E-value=4.4e-05 Score=49.27 Aligned_cols=32 Identities=38% Similarity=0.542 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Q 007401 558 KAYLRRGTAREALFCYNEALQDFKHAMVLEPQ 589 (605)
Q Consensus 558 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 589 (605)
.+|+++|.++..+|++++|+.+|+++++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 34555555555555555555555555555554
No 201
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.77 E-value=2.7e-05 Score=50.19 Aligned_cols=34 Identities=38% Similarity=0.567 Sum_probs=31.8
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 007401 511 YYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEE 544 (605)
Q Consensus 511 ~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~ 544 (605)
+|+++|+++|+++.+|+++|.+|...|++++|++
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 4899999999999999999999999999999863
No 202
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=97.75 E-value=0.00012 Score=65.61 Aligned_cols=81 Identities=22% Similarity=0.196 Sum_probs=60.6
Q ss_pred ChHHHHHHHHHHHHHHHC----------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-----------HHHHH
Q 007401 485 SIDASELLKEKGNAAFKG----------KQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGC-----------FQQAE 543 (605)
Q Consensus 485 ~~~~a~~~~~~g~~~~~~----------g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~-----------~~~A~ 543 (605)
+|.+++.+.+.|..+... ..+++|+..|++++.++|+..++++++|.+|..++. |++|.
T Consensus 21 nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~ 100 (186)
T PF06552_consen 21 NPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKAT 100 (186)
T ss_dssp -TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
T ss_pred CcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHH
Confidence 466788888877777654 346889999999999999999999999999986642 89999
Q ss_pred HHHHHHHhcCCCCHHHHHHHHH
Q 007401 544 EDCSKTISLDKKNVKAYLRRGT 565 (605)
Q Consensus 544 ~~~~~al~~~p~~~~~~~~la~ 565 (605)
++|++|...+|+|....-.+-.
T Consensus 101 ~~FqkAv~~~P~ne~Y~ksLe~ 122 (186)
T PF06552_consen 101 EYFQKAVDEDPNNELYRKSLEM 122 (186)
T ss_dssp HHHHHHHHH-TT-HHHHHHHHH
T ss_pred HHHHHHHhcCCCcHHHHHHHHH
Confidence 9999999999998755444433
No 203
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.75 E-value=4.7e-05 Score=49.12 Aligned_cols=32 Identities=31% Similarity=0.524 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 007401 524 TYYSNRAAAYLELGCFQQAEEDCSKTISLDKK 555 (605)
Q Consensus 524 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~ 555 (605)
.+|+++|.+|+.++++++|+.+|+++++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 45555666666666666666666666665554
No 204
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.74 E-value=0.00054 Score=67.25 Aligned_cols=49 Identities=20% Similarity=0.282 Sum_probs=27.6
Q ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 007401 496 GNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEE 544 (605)
Q Consensus 496 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~ 544 (605)
|.++|+.|+|++|+..|+-+.+-+.-+++.+.+++-|++.+|.|.+|..
T Consensus 64 a~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~ 112 (557)
T KOG3785|consen 64 AHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKS 112 (557)
T ss_pred HHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHH
Confidence 5666666666666666666655444445555555555554444444443
No 205
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=97.73 E-value=0.00014 Score=74.63 Aligned_cols=110 Identities=27% Similarity=0.237 Sum_probs=99.0
Q ss_pred CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHhcCCCCHHH
Q 007401 483 NGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLEL---GCFQQAEEDCSKTISLDKKNVKA 559 (605)
Q Consensus 483 ~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~---~~~~~A~~~~~~al~~~p~~~~~ 559 (605)
.+.++.++.+++.|+..+..+....|+..|.++++..|+....|.+++.++++. ++.-.|+.++..|+++||...++
T Consensus 368 ~eL~e~ie~~~~egnd~ly~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~ka 447 (758)
T KOG1310|consen 368 YELPENIEKFKTEGNDGLYESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKA 447 (758)
T ss_pred hhchHHHHHHHhhccchhhhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHH
Confidence 345677888889999999999999999999999999999999999999999875 47788999999999999999999
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHH
Q 007401 560 YLRRGTAREALFCYNEALQDFKHAMVLEPQNKA 592 (605)
Q Consensus 560 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 592 (605)
|++++.++.+++++.+|+++...+....|.+..
T Consensus 448 h~~la~aL~el~r~~eal~~~~alq~~~Ptd~a 480 (758)
T KOG1310|consen 448 HFRLARALNELTRYLEALSCHWALQMSFPTDVA 480 (758)
T ss_pred HHHHHHHHHHHhhHHHhhhhHHHHhhcCchhhh
Confidence 999999999999999999998877777775543
No 206
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=97.72 E-value=5.2e-05 Score=73.85 Aligned_cols=79 Identities=19% Similarity=0.217 Sum_probs=70.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhh
Q 007401 526 YSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAANLAEKRLRKLI 604 (605)
Q Consensus 526 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~ 604 (605)
.-.+|+-|+++|.|++|+.||.+++.++|.|+..+-+++.+|+++++|..|...++.++.++.....++...+.....+
T Consensus 100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~L 178 (536)
T KOG4648|consen 100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESL 178 (536)
T ss_pred HHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 5678999999999999999999999999999999999999999999999999999999999876666666665554443
No 207
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=97.71 E-value=0.00028 Score=64.76 Aligned_cols=72 Identities=18% Similarity=0.175 Sum_probs=67.2
Q ss_pred ChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 007401 485 SIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKN 556 (605)
Q Consensus 485 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~ 556 (605)
+|..+..++-+|..+...|+|+.|.+.|+..++++|.+--+..|+|..++.-|+|+-|.+++.+-.+.||++
T Consensus 95 ~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~D 166 (297)
T COG4785 95 RPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPND 166 (297)
T ss_pred CCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHHHHHHhcCCCC
Confidence 467788899999999999999999999999999999999999999999999999999999999988888876
No 208
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.71 E-value=0.0013 Score=58.74 Aligned_cols=98 Identities=23% Similarity=0.169 Sum_probs=77.7
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC----------------------HHHHHHHHHHHHHcCCHHHHHHHH
Q 007401 489 SELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTS----------------------ATYYSNRAAAYLELGCFQQAEEDC 546 (605)
Q Consensus 489 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~----------------------~~~~~~la~~~~~~~~~~~A~~~~ 546 (605)
...+...|......++.+++++.+++++.+.... ..++..++..+...|++++|+..+
T Consensus 6 F~~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 85 (146)
T PF03704_consen 6 FEALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLL 85 (146)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHH
Confidence 3445556777778889999999999999864211 345667788888999999999999
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q 007401 547 SKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVL 586 (605)
Q Consensus 547 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 586 (605)
++++..+|.+-.+|..+..+|...|++.+|++.|+++.+.
T Consensus 86 ~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~ 125 (146)
T PF03704_consen 86 QRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRR 125 (146)
T ss_dssp HHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999988543
No 209
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.70 E-value=9.6e-05 Score=47.57 Aligned_cols=33 Identities=36% Similarity=0.529 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC
Q 007401 558 KAYLRRGTAREALFCYNEALQDFKHAMVLEPQN 590 (605)
Q Consensus 558 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 590 (605)
++|+.+|.+++.+|++++|+++|+++++++|+|
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 455556666666666666666666666665553
No 210
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=97.65 E-value=0.00076 Score=58.66 Aligned_cols=108 Identities=18% Similarity=0.131 Sum_probs=78.5
Q ss_pred CchhHHhHHHHHHhH--HHHHHhhhccCCCCCCCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC---HHH
Q 007401 451 GDKFLLDTVLDLYDS--LQEQVNIASNLVPLPDTNGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTS---ATY 525 (605)
Q Consensus 451 ~d~~ll~~a~~l~~~--~~e~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---~~~ 525 (605)
.+..+...+...... ..++++..+.. ...-+..+-..++...++..+++.++|++|+..|++.|+++|++ ..+
T Consensus 9 ~~~~ly~~a~~~l~~~~Y~~A~~~le~L--~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa 86 (142)
T PF13512_consen 9 SPQELYQEAQEALQKGNYEEAIKQLEAL--DTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYA 86 (142)
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHH--HhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHH
Confidence 344555555444433 23333333332 11122233345778889999999999999999999999999887 568
Q ss_pred HHHHHHHHHHcCC---------------HHHHHHHHHHHHhcCCCCHHHH
Q 007401 526 YSNRAAAYLELGC---------------FQQAEEDCSKTISLDKKNVKAY 560 (605)
Q Consensus 526 ~~~la~~~~~~~~---------------~~~A~~~~~~al~~~p~~~~~~ 560 (605)
++.+|.+++.+.+ ..+|...|++.++..|++..+-
T Consensus 87 ~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya~ 136 (142)
T PF13512_consen 87 YYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYAA 136 (142)
T ss_pred HHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChhHH
Confidence 9999999999876 8999999999999999987543
No 211
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.62 E-value=0.00041 Score=69.47 Aligned_cols=104 Identities=22% Similarity=0.248 Sum_probs=83.5
Q ss_pred HHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHhCCC--C----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC----
Q 007401 487 DASELLKEKGNAAFKG-KQWNKAVNYYSEAIKLNGT--S----ATYYSNRAAAYLELGCFQQAEEDCSKTISLDKK---- 555 (605)
Q Consensus 487 ~~a~~~~~~g~~~~~~-g~~~~A~~~~~~al~~~p~--~----~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~---- 555 (605)
..+..+.++|..|... +++++|+++|++|+.+... . ..++...|.++.++++|++|++.|++.....-+
T Consensus 112 ~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~ 191 (282)
T PF14938_consen 112 QAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLL 191 (282)
T ss_dssp HHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTT
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhccccc
Confidence 4578899999999999 9999999999999987422 1 467789999999999999999999998875322
Q ss_pred --CH-HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC
Q 007401 556 --NV-KAYLRRGTAREALFCYNEALQDFKHAMVLEPQN 590 (605)
Q Consensus 556 --~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 590 (605)
+. ..++..+.|++..||+-.|.+.+++....+|..
T Consensus 192 ~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F 229 (282)
T PF14938_consen 192 KYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSF 229 (282)
T ss_dssp GHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTS
T ss_pred chhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 12 356778889999999999999999999998854
No 212
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.61 E-value=0.00014 Score=46.84 Aligned_cols=32 Identities=28% Similarity=0.432 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 007401 524 TYYSNRAAAYLELGCFQQAEEDCSKTISLDKK 555 (605)
Q Consensus 524 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~ 555 (605)
.+++.+|.+++.+|+|++|+++|+++++++|+
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 34455555555555555555555555555554
No 213
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.52 E-value=0.00031 Score=70.33 Aligned_cols=101 Identities=23% Similarity=0.285 Sum_probs=78.8
Q ss_pred hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC--C----CHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhcCC--CC
Q 007401 486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNG--T----SATYYSNRAAAYLEL-GCFQQAEEDCSKTISLDK--KN 556 (605)
Q Consensus 486 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p--~----~~~~~~~la~~~~~~-~~~~~A~~~~~~al~~~p--~~ 556 (605)
...+..|.+.+.++.+. ++++|+++|++++.+.- . -+..+..+|.+|... +++++|+++|++|+.+.. +.
T Consensus 72 ~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~ 150 (282)
T PF14938_consen 72 FEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGS 150 (282)
T ss_dssp HHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCC
Confidence 34566777766666555 99999999999998632 1 267889999999988 999999999999998732 22
Q ss_pred ----HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Q 007401 557 ----VKAYLRRGTAREALFCYNEALQDFKHAMVLE 587 (605)
Q Consensus 557 ----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 587 (605)
...+...|.++.++|+|++|++.|++.....
T Consensus 151 ~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~ 185 (282)
T PF14938_consen 151 PHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKC 185 (282)
T ss_dssp HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTC
T ss_pred hhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHh
Confidence 3477889999999999999999999998764
No 214
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.50 E-value=0.00091 Score=63.21 Aligned_cols=106 Identities=17% Similarity=0.198 Sum_probs=93.1
Q ss_pred hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh----C--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHH
Q 007401 486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKL----N--GTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKA 559 (605)
Q Consensus 486 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~----~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 559 (605)
+.+......+|...++.||-+.|..++++.-+. + ..+-.+..+.+.+|.-.++|.+|...|.+.+..|+.++.+
T Consensus 209 e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a 288 (366)
T KOG2796|consen 209 EQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVA 288 (366)
T ss_pred cccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhh
Confidence 456777888999999999999999999955432 2 2346778888999999999999999999999999999999
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH
Q 007401 560 YLRRGTAREALFCYNEALQDFKHAMVLEPQNK 591 (605)
Q Consensus 560 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 591 (605)
.++.|.|+..+|+..+|++.++.+++..|...
T Consensus 289 ~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~ 320 (366)
T KOG2796|consen 289 NNNKALCLLYLGKLKDALKQLEAMVQQDPRHY 320 (366)
T ss_pred hchHHHHHHHHHHHHHHHHHHHHHhccCCccc
Confidence 99999999999999999999999999999753
No 215
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.44 E-value=0.00035 Score=69.82 Aligned_cols=98 Identities=15% Similarity=0.193 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc----CC--CC
Q 007401 489 SELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTS------ATYYSNRAAAYLELGCFQQAEEDCSKTISL----DK--KN 556 (605)
Q Consensus 489 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~al~~----~p--~~ 556 (605)
..++-++|+.|+-.|+|++|+..-+.-+.+..++ -.++.++|.||.-+++|+.|+++|++.+.+ .. ..
T Consensus 195 GRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vE 274 (639)
T KOG1130|consen 195 GRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVE 274 (639)
T ss_pred cchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHH
Confidence 3445555555555555555555554444432221 234555555555555555555555554332 11 12
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q 007401 557 VKAYLRRGTAREALFCYNEALQDFKHAMVL 586 (605)
Q Consensus 557 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 586 (605)
++..|.+|..|.-..++++|+.++++=+++
T Consensus 275 AQscYSLgNtytll~e~~kAI~Yh~rHLaI 304 (639)
T KOG1130|consen 275 AQSCYSLGNTYTLLKEVQKAITYHQRHLAI 304 (639)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555555555555555555554443
No 216
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.40 E-value=0.0022 Score=67.31 Aligned_cols=91 Identities=13% Similarity=0.119 Sum_probs=58.5
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------------------
Q 007401 493 KEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISL-------------------- 552 (605)
Q Consensus 493 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-------------------- 552 (605)
++.+-++|+.++.++|+..++ ..++.+...+..+|+.++++++|++|.+.|+..++-
T Consensus 83 fEKAYc~Yrlnk~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l 159 (652)
T KOG2376|consen 83 FEKAYCEYRLNKLDEALKTLK---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAAL 159 (652)
T ss_pred HHHHHHHHHcccHHHHHHHHh---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhh
Confidence 455555555555555555555 234444445555555555555555555555554332
Q ss_pred ----------CCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q 007401 553 ----------DKK-NVKAYLRRGTAREALFCYNEALQDFKHAMVL 586 (605)
Q Consensus 553 ----------~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 586 (605)
.|. ..+.+||.+-++...|+|.+|++.+++++++
T Consensus 160 ~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~ 204 (652)
T KOG2376|consen 160 QVQLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRI 204 (652)
T ss_pred hHHHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 233 4568999999999999999999999999443
No 217
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.39 E-value=0.00052 Score=68.61 Aligned_cols=101 Identities=17% Similarity=0.108 Sum_probs=85.2
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC------
Q 007401 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLN------GTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDK------ 554 (605)
Q Consensus 487 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~------p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p------ 554 (605)
..-.++.++|+++.-.|+|+.|+++|++.+.+. ...+...|.+|..|..+.+|++|+.++++-+++-.
T Consensus 233 aeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~Dri 312 (639)
T KOG1130|consen 233 AERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRI 312 (639)
T ss_pred HHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 345678899999999999999999999987652 23467789999999999999999999999666532
Q ss_pred CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Q 007401 555 KNVKAYLRRGTAREALFCYNEALQDFKHAMVLE 587 (605)
Q Consensus 555 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 587 (605)
....+++.+|.++..+|..++|+.+.++.+++.
T Consensus 313 Ge~RacwSLgna~~alg~h~kAl~fae~hl~~s 345 (639)
T KOG1130|consen 313 GELRACWSLGNAFNALGEHRKALYFAELHLRSS 345 (639)
T ss_pred hhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 346699999999999999999999988887663
No 218
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.34 E-value=0.0076 Score=58.52 Aligned_cols=97 Identities=12% Similarity=0.108 Sum_probs=79.0
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH-------------------------
Q 007401 492 LKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDC------------------------- 546 (605)
Q Consensus 492 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~------------------------- 546 (605)
-+..+......|++.+|...|..++...|++..+...++.||...|+.+.|...+
T Consensus 137 ~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qa 216 (304)
T COG3118 137 ALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQA 216 (304)
T ss_pred HHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHH
Confidence 3445677788888889999899998888888888888888888888876555433
Q ss_pred ---------HHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Q 007401 547 ---------SKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEP 588 (605)
Q Consensus 547 ---------~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 588 (605)
++.+..||++..+-+.+|..|...|+++.|++.+-..++.+.
T Consensus 217 a~~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~ 267 (304)
T COG3118 217 AATPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDR 267 (304)
T ss_pred hcCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence 333445789999999999999999999999999988888764
No 219
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=97.33 E-value=0.0017 Score=64.14 Aligned_cols=99 Identities=16% Similarity=0.159 Sum_probs=82.1
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC----C--
Q 007401 489 SELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTS------ATYYSNRAAAYLELGCFQQAEEDCSKTISLDKK----N-- 556 (605)
Q Consensus 489 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~----~-- 556 (605)
.+....+|+.+...+.|+++++.|+++++...++ ..++..+|..|.++.|+++|+-+..+|.++-.+ +
T Consensus 122 gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~ 201 (518)
T KOG1941|consen 122 GQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWS 201 (518)
T ss_pred chhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchh
Confidence 4666778999999999999999999999875443 457889999999999999999999999887432 2
Q ss_pred ----HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Q 007401 557 ----VKAYLRRGTAREALFCYNEALQDFKHAMVLE 587 (605)
Q Consensus 557 ----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 587 (605)
..++|.++.++..+|+.-+|+++++++.++.
T Consensus 202 ~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~kla 236 (518)
T KOG1941|consen 202 LKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLA 236 (518)
T ss_pred HHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHH
Confidence 2377889999999999999999999987763
No 220
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.29 E-value=0.0004 Score=64.73 Aligned_cols=78 Identities=14% Similarity=0.154 Sum_probs=70.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 007401 526 YSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAANLAEKRLRKL 603 (605)
Q Consensus 526 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~ 603 (605)
+..-|..++....|..|+.+|.+||.++|..+..|-+++.||++..+++.+.+...++++++|+....++.++.....
T Consensus 13 lkE~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~ 90 (284)
T KOG4642|consen 13 LKEQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQ 90 (284)
T ss_pred HHhccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHh
Confidence 345577777888999999999999999999999999999999999999999999999999999999998888876543
No 221
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=97.28 E-value=0.01 Score=59.60 Aligned_cols=98 Identities=16% Similarity=0.101 Sum_probs=63.6
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 007401 489 SELLKEKGNAAFKGKQWNKAVNYYSEAIKLNG-TSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAR 567 (605)
Q Consensus 489 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 567 (605)
.-.|..-+...-+.|+++.|-.++.++-+..+ +.-..+..++......++++.|.....+++++.|.++.+....-.+|
T Consensus 118 ~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y 197 (400)
T COG3071 118 VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENVDQLLEMTPRHPEVLRLALRAY 197 (400)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHH
Confidence 44455555666666777777777777666633 33455666666666677777777777777777777777777677777
Q ss_pred HHccCHHHHHHHHHHHHHh
Q 007401 568 EALFCYNEALQDFKHAMVL 586 (605)
Q Consensus 568 ~~~g~~~~A~~~~~~al~~ 586 (605)
.+.|++.+....+.+.-+-
T Consensus 198 ~~~g~~~~ll~~l~~L~ka 216 (400)
T COG3071 198 IRLGAWQALLAILPKLRKA 216 (400)
T ss_pred HHhccHHHHHHHHHHHHHc
Confidence 7777777666666655443
No 222
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.28 E-value=0.00078 Score=64.70 Aligned_cols=95 Identities=19% Similarity=0.201 Sum_probs=82.1
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc----CCCC------
Q 007401 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISL----DKKN------ 556 (605)
Q Consensus 487 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~----~p~~------ 556 (605)
+.++...+.|-..++.|+|++|++.|+.+++...-++..-++++.|+++.++|+.|++.....++. .|+.
T Consensus 142 n~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~t 221 (459)
T KOG4340|consen 142 NEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHYSSRQYASALKHISEIIERGIRQHPELGIGMTT 221 (459)
T ss_pred CccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCcccee
Confidence 567888999999999999999999999999999999999999999999999999999988776654 4432
Q ss_pred -------------------HHHHHHHHHHHHHccCHHHHHHHHH
Q 007401 557 -------------------VKAYLRRGTAREALFCYNEALQDFK 581 (605)
Q Consensus 557 -------------------~~~~~~la~~~~~~g~~~~A~~~~~ 581 (605)
.++++..+-++++.++++.|.+.+-
T Consensus 222 egiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLt 265 (459)
T KOG4340|consen 222 EGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALT 265 (459)
T ss_pred ccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhh
Confidence 3477778889999999998887653
No 223
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.26 E-value=0.0022 Score=63.03 Aligned_cols=87 Identities=15% Similarity=0.136 Sum_probs=74.4
Q ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHH
Q 007401 497 NAAFKGKQWNKAVNYYSEAIKLNGTSA-TYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNE 575 (605)
Q Consensus 497 ~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 575 (605)
..+....+|..|+..++-....+.+.. ..-.-+|.|++.+|+|++|+..|.-+.+.+.-+.+.+.+++.|++.+|.|.+
T Consensus 30 edfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~e 109 (557)
T KOG3785|consen 30 EDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIE 109 (557)
T ss_pred HHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHH
Confidence 345678899999999988877655443 5667789999999999999999999998777788999999999999999999
Q ss_pred HHHHHHHH
Q 007401 576 ALQDFKHA 583 (605)
Q Consensus 576 A~~~~~~a 583 (605)
|...-+++
T Consensus 110 A~~~~~ka 117 (557)
T KOG3785|consen 110 AKSIAEKA 117 (557)
T ss_pred HHHHHhhC
Confidence 98876654
No 224
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=97.21 E-value=0.01 Score=55.91 Aligned_cols=103 Identities=26% Similarity=0.330 Sum_probs=86.4
Q ss_pred HHHHCCCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHccCH
Q 007401 498 AAFKGKQWNKAVNYYSEAIKLNG---TSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKK-NVKAYLRRGTAREALFCY 573 (605)
Q Consensus 498 ~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~ 573 (605)
.+...+++++|+..|++++...| .....+..++..+...+++++++..+.+++...+. ....+..++.++...+++
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (291)
T COG0457 139 ALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKY 218 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccH
Confidence 78899999999999999988776 45677777777788889999999999999999998 688999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 007401 574 NEALQDFKHAMVLEPQNKAANLAEKRL 600 (605)
Q Consensus 574 ~~A~~~~~~al~~~p~~~~~~~~~~~~ 600 (605)
++|...+.+++...|............
T Consensus 219 ~~a~~~~~~~~~~~~~~~~~~~~~~~~ 245 (291)
T COG0457 219 EEALEYYEKALELDPDNAEALYNLALL 245 (291)
T ss_pred HHHHHHHHHHHhhCcccHHHHhhHHHH
Confidence 999999999999988754444444443
No 225
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.20 E-value=0.00096 Score=68.20 Aligned_cols=116 Identities=19% Similarity=0.120 Sum_probs=95.4
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHH-HHhCCC--------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-c----
Q 007401 487 DASELLKEKGNAAFKGKQWNKAVNYYSEA-IKLNGT--------SATYYSNRAAAYLELGCFQQAEEDCSKTIS-L---- 552 (605)
Q Consensus 487 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~a-l~~~p~--------~~~~~~~la~~~~~~~~~~~A~~~~~~al~-~---- 552 (605)
+.+..+....+.++..|+|.+|.+.+... +.-.+. ...+|+|+|-++++++.|.-+..+|.+|++ .
T Consensus 238 ~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL 317 (696)
T KOG2471|consen 238 DSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQL 317 (696)
T ss_pred CCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHH
Confidence 34567778899999999999999987664 222222 345678999999999999999999999996 1
Q ss_pred ----CC---------CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 007401 553 ----DK---------KNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAANLAEKRLRK 602 (605)
Q Consensus 553 ----~p---------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 602 (605)
.| ...+..|+.|..|...|+...|.+||.++.+..-.|+..|..++++..
T Consensus 318 ~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCi 380 (696)
T KOG2471|consen 318 RNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCI 380 (696)
T ss_pred hccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 11 345699999999999999999999999999999999999999888754
No 226
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.20 E-value=0.0035 Score=60.37 Aligned_cols=79 Identities=13% Similarity=0.056 Sum_probs=69.3
Q ss_pred hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHH
Q 007401 486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTS---ATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLR 562 (605)
Q Consensus 486 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 562 (605)
.-.+++++=+|.+++.+|+|++|...|..+++..|++ ++.++.+|.|...+++.++|...|+++++..|+...+...
T Consensus 175 ~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~YP~t~aA~~A 254 (262)
T COG1729 175 TYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIKRYPGTDAAKLA 254 (262)
T ss_pred cccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCCHHHHHH
Confidence 3445667777999999999999999999999988765 7899999999999999999999999999999998876654
Q ss_pred HH
Q 007401 563 RG 564 (605)
Q Consensus 563 la 564 (605)
..
T Consensus 255 k~ 256 (262)
T COG1729 255 KV 256 (262)
T ss_pred HH
Confidence 43
No 227
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=97.19 E-value=0.007 Score=60.78 Aligned_cols=85 Identities=16% Similarity=0.094 Sum_probs=54.5
Q ss_pred HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHH
Q 007401 501 KGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEALQDF 580 (605)
Q Consensus 501 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 580 (605)
+-+++..=++..++.++..|+++..+..+|..+++.+.|.+|.++++.|++..| +...|..+|.++.++|+.++|.+++
T Consensus 306 ~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~-s~~~~~~la~~~~~~g~~~~A~~~r 384 (400)
T COG3071 306 RPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRP-SASDYAELADALDQLGEPEEAEQVR 384 (400)
T ss_pred CCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCC-ChhhHHHHHHHHHHcCChHHHHHHH
Confidence 344555555555555566666666666777777777777777777776666665 3556666666777777777776666
Q ss_pred HHHHHh
Q 007401 581 KHAMVL 586 (605)
Q Consensus 581 ~~al~~ 586 (605)
++++.+
T Consensus 385 ~e~L~~ 390 (400)
T COG3071 385 REALLL 390 (400)
T ss_pred HHHHHH
Confidence 666643
No 228
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.19 E-value=0.0016 Score=62.55 Aligned_cols=117 Identities=13% Similarity=0.081 Sum_probs=92.0
Q ss_pred hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH----------------H
Q 007401 486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSK----------------T 549 (605)
Q Consensus 486 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~----------------a 549 (605)
+..-..+..+|-+|+..++|.+|..+|++...+.|.........++.+++.+.|..|+..... |
T Consensus 41 p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALrV~~~~~D~~~L~~~~lqLqaA 120 (459)
T KOG4340|consen 41 PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALRVAFLLLDNPALHSRVLQLQAA 120 (459)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 444567888999999999999999999999999999988888888888888888777765433 2
Q ss_pred HhcC--------------C--CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 007401 550 ISLD--------------K--KNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAANLAEKRLRK 602 (605)
Q Consensus 550 l~~~--------------p--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 602 (605)
|+.. | +.+....+.|-+.++.|+|+.|++-|+.+++...-++-..+.++.++.
T Consensus 121 IkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALaHy 189 (459)
T KOG4340|consen 121 IKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHY 189 (459)
T ss_pred HhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHH
Confidence 2221 2 345677788888899999999999999999988877766666665543
No 229
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=97.17 E-value=0.0017 Score=62.70 Aligned_cols=82 Identities=15% Similarity=0.165 Sum_probs=73.4
Q ss_pred hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 007401 486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGT 565 (605)
Q Consensus 486 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~ 565 (605)
..++..-.+.+....+.|+.++|...|+.++.++|++++++..+|+..-..++.-+|-.+|-+|+.++|.|.+++.++++
T Consensus 113 ~kEA~~Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~R 192 (472)
T KOG3824|consen 113 VKEAILALKAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRAR 192 (472)
T ss_pred hHHHHHHHHHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhc
Confidence 34455556667788899999999999999999999999999999999988899999999999999999999999998876
Q ss_pred HH
Q 007401 566 AR 567 (605)
Q Consensus 566 ~~ 567 (605)
..
T Consensus 193 T~ 194 (472)
T KOG3824|consen 193 TT 194 (472)
T ss_pred cc
Confidence 53
No 230
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.16 E-value=0.0042 Score=58.87 Aligned_cols=118 Identities=16% Similarity=0.200 Sum_probs=100.1
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH----hcC--CCCHHH
Q 007401 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLN-GTSATYYSNRAAAYLELGCFQQAEEDCSKTI----SLD--KKNVKA 559 (605)
Q Consensus 487 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al----~~~--p~~~~~ 559 (605)
+.-...+.+..++...+.|.-.+..|++.++.+ |.++.....+|.+.++.||.+.|..++++.- +++ ..+...
T Consensus 175 Rl~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V 254 (366)
T KOG2796|consen 175 RLGRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMV 254 (366)
T ss_pred HHHHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHH
Confidence 344566778889999999999999999999988 6788888999999999999999999998543 333 345568
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhh
Q 007401 560 YLRRGTAREALFCYNEALQDFKHAMVLEPQNKAANLAEKRLRKLI 604 (605)
Q Consensus 560 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~ 604 (605)
..+.+.+|.-.++|.+|...|.+++..||.++.+....+.|+..+
T Consensus 255 ~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYl 299 (366)
T KOG2796|consen 255 LMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYL 299 (366)
T ss_pred HhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHH
Confidence 888999999999999999999999999999998888777766544
No 231
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=97.16 E-value=0.0037 Score=51.59 Aligned_cols=93 Identities=14% Similarity=0.214 Sum_probs=79.0
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCC-----------HHHHHHHHHHHHhcCCCCHHHH
Q 007401 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSA---TYYSNRAAAYLELGC-----------FQQAEEDCSKTISLDKKNVKAY 560 (605)
Q Consensus 495 ~g~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~~~-----------~~~A~~~~~~al~~~p~~~~~~ 560 (605)
++..++..|++-+|++..++.+..++++. ..+...|.+++++.. ...++++|+++..+.|..+..+
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L 81 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSL 81 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHH
Confidence 47789999999999999999999887765 556677888866542 5678999999999999999999
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhC
Q 007401 561 LRRGTAREALFCYNEALQDFKHAMVLE 587 (605)
Q Consensus 561 ~~la~~~~~~g~~~~A~~~~~~al~~~ 587 (605)
+.+|.-+-....|++++.-.+++|...
T Consensus 82 ~~la~~l~s~~~Ykk~v~kak~~Lsv~ 108 (111)
T PF04781_consen 82 FELASQLGSVKYYKKAVKKAKRGLSVT 108 (111)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHhccc
Confidence 999988888888999999999988764
No 232
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=97.11 E-value=0.0028 Score=45.16 Aligned_cols=45 Identities=16% Similarity=0.153 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 007401 559 AYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAANLAEKRLRKL 603 (605)
Q Consensus 559 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~ 603 (605)
.+|.+|..++++|+|++|..+++.+|+++|+|.++......+..+
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i~~~ 47 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKELIEDK 47 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH
Confidence 467777777788888888888888888888777777666655443
No 233
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.09 E-value=0.01 Score=56.58 Aligned_cols=105 Identities=13% Similarity=0.133 Sum_probs=87.6
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 007401 488 ASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAR 567 (605)
Q Consensus 488 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 567 (605)
.++.|..++ ...+++++|.-.|++.-+..+-.+..+..++.|++++++|++|...++.++..+++++..+-|+-.+-
T Consensus 175 LA~awv~la---~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a 251 (299)
T KOG3081|consen 175 LAQAWVKLA---TGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLA 251 (299)
T ss_pred HHHHHHHHh---ccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHH
Confidence 345555544 33457999999999999988888999999999999999999999999999999999999999999999
Q ss_pred HHccCHHHHHH-HHHHHHHhCCCCHHHHH
Q 007401 568 EALFCYNEALQ-DFKHAMVLEPQNKAANL 595 (605)
Q Consensus 568 ~~~g~~~~A~~-~~~~al~~~p~~~~~~~ 595 (605)
..+|.-.++.+ .+.+....+|+++....
T Consensus 252 ~~~Gkd~~~~~r~l~QLk~~~p~h~~vk~ 280 (299)
T KOG3081|consen 252 LHLGKDAEVTERNLSQLKLSHPEHPFVKH 280 (299)
T ss_pred HHhCCChHHHHHHHHHHHhcCCcchHHHH
Confidence 99998877655 56666677787765543
No 234
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=97.06 E-value=0.0011 Score=42.59 Aligned_cols=31 Identities=42% Similarity=0.590 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Q 007401 558 KAYLRRGTAREALFCYNEALQDFKHAMVLEP 588 (605)
Q Consensus 558 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 588 (605)
.+|+.+|.+|..+|++++|+++|+++++++|
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 3455555555555555555555555555555
No 235
>PRK10941 hypothetical protein; Provisional
Probab=97.03 E-value=0.0066 Score=59.58 Aligned_cols=79 Identities=18% Similarity=0.177 Sum_probs=66.7
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 007401 489 SELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAR 567 (605)
Q Consensus 489 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 567 (605)
...+.++=..+.+.++++.|+.+.+..+.+.|+++.-+..+|.+|.+++.+..|..+++..++..|+++.+-.-+..+.
T Consensus 181 ~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~ 259 (269)
T PRK10941 181 RKLLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIH 259 (269)
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHH
Confidence 4666777788888999999999999999999999988889999999999999999999999999998887766655543
No 236
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=96.98 E-value=0.0016 Score=41.77 Aligned_cols=30 Identities=20% Similarity=0.347 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Q 007401 491 LLKEKGNAAFKGKQWNKAVNYYSEAIKLNG 520 (605)
Q Consensus 491 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p 520 (605)
.|+.+|.++.+.|++++|+++|+++++++|
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 344445555555555555555555544444
No 237
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=96.95 E-value=0.019 Score=48.88 Aligned_cols=83 Identities=16% Similarity=0.069 Sum_probs=63.8
Q ss_pred CHHHHHHHHHHHHHcC---CHHHHHHHHHHHHh-cCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHH
Q 007401 522 SATYYSNRAAAYLELG---CFQQAEEDCSKTIS-LDKK-NVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAANLA 596 (605)
Q Consensus 522 ~~~~~~~la~~~~~~~---~~~~A~~~~~~al~-~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 596 (605)
.....+++++++.... +.++.+..++..++ -+|. ..+..|+++..++++++|++++.+++..++.+|+|.++...
T Consensus 31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~L 110 (149)
T KOG3364|consen 31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALEL 110 (149)
T ss_pred hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHH
Confidence 3566778888887554 46778888888886 4443 34678888999999999999999999999999999888877
Q ss_pred HHHHHHhh
Q 007401 597 EKRLRKLI 604 (605)
Q Consensus 597 ~~~~~~~~ 604 (605)
...+..++
T Consensus 111 k~~ied~i 118 (149)
T KOG3364|consen 111 KETIEDKI 118 (149)
T ss_pred HHHHHHHH
Confidence 77666543
No 238
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=96.92 E-value=0.0087 Score=59.74 Aligned_cols=109 Identities=13% Similarity=0.064 Sum_probs=87.1
Q ss_pred HHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH---HHHHH
Q 007401 487 DASELLKEKGNAAFK-GKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNV---KAYLR 562 (605)
Q Consensus 487 ~~a~~~~~~g~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~ 562 (605)
...+.|...|...+. .++.+.|...|+.+++..|.+...|......+...++.+.|...|++++..-+... ..|..
T Consensus 33 ~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~ 112 (280)
T PF05843_consen 33 CTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIKLNDINNARALFERAISSLPKEKQSKKIWKK 112 (280)
T ss_dssp S-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHH
Confidence 345778888888777 56667799999999999999999999999999999999999999999998766544 57777
Q ss_pred HHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHH
Q 007401 563 RGTAREALFCYNEALQDFKHAMVLEPQNKAANL 595 (605)
Q Consensus 563 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 595 (605)
...--...|+.+...+..+++.+..|++.....
T Consensus 113 ~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~~~~~ 145 (280)
T PF05843_consen 113 FIEFESKYGDLESVRKVEKRAEELFPEDNSLEL 145 (280)
T ss_dssp HHHHHHHHS-HHHHHHHHHHHHHHTTTS-HHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHhhhhhHHHH
Confidence 888888889999999999999999888665443
No 239
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=96.92 E-value=0.031 Score=52.45 Aligned_cols=103 Identities=28% Similarity=0.352 Sum_probs=94.3
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 007401 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGT-SATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGT 565 (605)
Q Consensus 487 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~ 565 (605)
.....+...+..+...+++++|+..+.+++...+. ....+..++.++...+++.+|+..+.+++...|.....+..++.
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 244 (291)
T COG0457 165 ELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLAL 244 (291)
T ss_pred chHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHH
Confidence 45667777777788999999999999999999999 79999999999999999999999999999999988888888999
Q ss_pred HHHHccCHHHHHHHHHHHHHhCCC
Q 007401 566 AREALFCYNEALQDFKHAMVLEPQ 589 (605)
Q Consensus 566 ~~~~~g~~~~A~~~~~~al~~~p~ 589 (605)
.+...++++++...++++++..|.
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 245 LLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCcc
Confidence 888888899999999999999986
No 240
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=96.91 E-value=0.0041 Score=65.05 Aligned_cols=105 Identities=18% Similarity=0.145 Sum_probs=93.0
Q ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHH
Q 007401 496 GNAAFKGKQWNKAVNYYSEAIKLNGTSA-TYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYN 574 (605)
Q Consensus 496 g~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 574 (605)
|...-..|+...|+.++..|+...|... -...++|++..+-+-...|...+.+++.++...+-.++.+|..+..+.+.+
T Consensus 614 glywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~ 693 (886)
T KOG4507|consen 614 GLYWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNIS 693 (886)
T ss_pred cceeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhH
Confidence 4334458999999999999999998754 457899999999998999999999999999889999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHH
Q 007401 575 EALQDFKHAMVLEPQNKAANLAEKRL 600 (605)
Q Consensus 575 ~A~~~~~~al~~~p~~~~~~~~~~~~ 600 (605)
.|++.|+.+++++|++......+..+
T Consensus 694 ~a~~~~~~a~~~~~~~~~~~~~l~~i 719 (886)
T KOG4507|consen 694 GALEAFRQALKLTTKCPECENSLKLI 719 (886)
T ss_pred HHHHHHHHHHhcCCCChhhHHHHHHH
Confidence 99999999999999999887766554
No 241
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.91 E-value=0.0084 Score=63.06 Aligned_cols=108 Identities=17% Similarity=0.172 Sum_probs=83.4
Q ss_pred CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHH
Q 007401 483 NGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLR 562 (605)
Q Consensus 483 ~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 562 (605)
...|+...+++..-.++.+.++|++|+...++=-... .+....+..+.|+++++..++|+.+++ -+++.+......
T Consensus 40 ~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~-~~~~~~fEKAYc~Yrlnk~Dealk~~~---~~~~~~~~ll~L 115 (652)
T KOG2376|consen 40 SIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALL-VINSFFFEKAYCEYRLNKLDEALKTLK---GLDRLDDKLLEL 115 (652)
T ss_pred hcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhh-hcchhhHHHHHHHHHcccHHHHHHHHh---cccccchHHHHH
Confidence 3346667778888888999999999995433322111 122333799999999999999999998 567777889999
Q ss_pred HHHHHHHccCHHHHHHHHHHHHHhCCCCHHHH
Q 007401 563 RGTAREALFCYNEALQDFKHAMVLEPQNKAAN 594 (605)
Q Consensus 563 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 594 (605)
.|.+++++++|++|+..|+...+.+-++....
T Consensus 116 ~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~ 147 (652)
T KOG2376|consen 116 RAQVLYRLERYDEALDIYQHLAKNNSDDQDEE 147 (652)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHhcCCchHHHH
Confidence 99999999999999999999988776665443
No 242
>PRK10941 hypothetical protein; Provisional
Probab=96.88 E-value=0.012 Score=57.92 Aligned_cols=79 Identities=16% Similarity=0.199 Sum_probs=71.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 007401 524 TYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAANLAEKRLRK 602 (605)
Q Consensus 524 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 602 (605)
..+.++=.+|.+.++++.|+++.++.+.++|+++.-+.-+|.+|.++|++..|...++..++..|+++.+......+..
T Consensus 182 Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~~ 260 (269)
T PRK10941 182 KLLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIHS 260 (269)
T ss_pred HHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHHH
Confidence 4556788899999999999999999999999999999999999999999999999999999999999887766665543
No 243
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=96.79 E-value=0.016 Score=60.15 Aligned_cols=115 Identities=11% Similarity=-0.005 Sum_probs=84.2
Q ss_pred CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC---------------------C----HHHHHHHHHHHHHcC
Q 007401 483 NGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGT---------------------S----ATYYSNRAAAYLELG 537 (605)
Q Consensus 483 ~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~---------------------~----~~~~~~la~~~~~~~ 537 (605)
.-+++.+.+|..++.... ....+|.++|+++++.... + ..+...+|.|..++|
T Consensus 196 ei~pdCAdAYILLAEEeA--~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~Rdt~~~~y~KrRLAmCarklG 273 (539)
T PF04184_consen 196 EINPDCADAYILLAEEEA--STIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHRRDTNVLVYAKRRLAMCARKLG 273 (539)
T ss_pred HhhhhhhHHHhhcccccc--cCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhccccchhhhhHHHHHHHHHHhC
Confidence 345667777777765432 3567888888888864110 0 234567899999999
Q ss_pred CHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-CCCCHHHHHHHHH
Q 007401 538 CFQQAEEDCSKTISLDKK--NVKAYLRRGTAREALFCYNEALQDFKHAMVL-EPQNKAANLAEKR 599 (605)
Q Consensus 538 ~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~~~~ 599 (605)
+.++|++.++..++.+|. +...++++..++..+++|.++...+.+.-++ .|+.....+..+.
T Consensus 274 r~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaAL 338 (539)
T PF04184_consen 274 RLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAAL 338 (539)
T ss_pred ChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHH
Confidence 999999999999988775 4569999999999999999999999987544 2444544444433
No 244
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=96.78 E-value=0.017 Score=63.56 Aligned_cols=116 Identities=13% Similarity=-0.017 Sum_probs=99.1
Q ss_pred ChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 007401 485 SIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRG 564 (605)
Q Consensus 485 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la 564 (605)
.|+..-+....|..+++.|++++|..+++..-...+++-..+..+-.||..++++++|..+|++++..+|+ -+..+.+=
T Consensus 39 ~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~P~-eell~~lF 117 (932)
T KOG2053|consen 39 HPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLYERANQKYPS-EELLYHLF 117 (932)
T ss_pred CCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCc-HHHHHHHH
Confidence 35555666677999999999999999999888888899999999999999999999999999999999998 88888888
Q ss_pred HHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 007401 565 TAREALFCYNEALQDFKHAMVLEPQNKAANLAEKRLR 601 (605)
Q Consensus 565 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 601 (605)
.+|.+.++|.+=.+.--+..+..|+++...+....+.
T Consensus 118 mayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Sli 154 (932)
T KOG2053|consen 118 MAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLI 154 (932)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHH
Confidence 8999999998777766667778899887766665543
No 245
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=96.78 E-value=0.13 Score=45.82 Aligned_cols=114 Identities=11% Similarity=-0.171 Sum_probs=94.0
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 007401 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTA 566 (605)
Q Consensus 487 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~ 566 (605)
.-...+.+......+.++.+++...+...-.+.|+.+..-..-|+.++..+++.+|+..++......|.++.+--.++.|
T Consensus 8 ~iv~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~C 87 (160)
T PF09613_consen 8 EIVGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALC 87 (160)
T ss_pred HHHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHH
Confidence 45678888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 007401 567 REALFCYNEALQDFKHAMVLEPQNKAANLAEKRLRK 602 (605)
Q Consensus 567 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 602 (605)
++.+++..-=.. -++++.. +.++.+......++.
T Consensus 88 L~~~~D~~Wr~~-A~evle~-~~d~~a~~Lv~~Ll~ 121 (160)
T PF09613_consen 88 LYALGDPSWRRY-ADEVLES-GADPDARALVRALLA 121 (160)
T ss_pred HHHcCChHHHHH-HHHHHhc-CCChHHHHHHHHHHH
Confidence 999999754322 2234443 346666655555443
No 246
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=96.76 E-value=0.088 Score=50.41 Aligned_cols=118 Identities=14% Similarity=0.079 Sum_probs=90.2
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCC--------HHHHHHHHHHHHhcCCCC
Q 007401 488 ASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTS---ATYYSNRAAAYLELGC--------FQQAEEDCSKTISLDKKN 556 (605)
Q Consensus 488 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~--------~~~A~~~~~~al~~~p~~ 556 (605)
.-+....++-.+++.++|++|+...++.+.+.|.+ ..+++.+|.+++..-+ ..+|+..++..++..|++
T Consensus 70 ~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS 149 (254)
T COG4105 70 SEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNS 149 (254)
T ss_pred cHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCC
Confidence 35778888999999999999999999999998875 4578888888765422 567888899999999876
Q ss_pred HH-----------------HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHhhC
Q 007401 557 VK-----------------AYLRRGTAREALFCYNEALQDFKHAMVLEPQNK---AANLAEKRLRKLIG 605 (605)
Q Consensus 557 ~~-----------------~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~~~~~~~~~g 605 (605)
.. --+..|.-|.+.|.+..|+.-++..++..|+.. .++..+..++..+|
T Consensus 150 ~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lg 218 (254)
T COG4105 150 RYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALG 218 (254)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhC
Confidence 22 223367778888999999999999998877654 45555666665554
No 247
>PLN03218 maturation of RBCL 1; Provisional
Probab=96.73 E-value=0.043 Score=64.60 Aligned_cols=94 Identities=15% Similarity=0.129 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Q 007401 491 LLKEKGNAAFKGKQWNKAVNYYSEAIKL--NGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLD-KKNVKAYLRRGTAR 567 (605)
Q Consensus 491 ~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~ 567 (605)
.|..+...|.+.|++++|++.|++..+. .|+ ...|..+...|.+.+++++|.+.+++..+.. +-+...|..+..+|
T Consensus 616 tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD-~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay 694 (1060)
T PLN03218 616 VYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPD-EVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGAC 694 (1060)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 3444444445555555555555554433 222 3444455555555555555555555555432 12344555555555
Q ss_pred HHccCHHHHHHHHHHHHH
Q 007401 568 EALFCYNEALQDFKHAMV 585 (605)
Q Consensus 568 ~~~g~~~~A~~~~~~al~ 585 (605)
.+.|++++|.+.|++..+
T Consensus 695 ~k~G~~eeA~~lf~eM~~ 712 (1060)
T PLN03218 695 SNAKNWKKALELYEDIKS 712 (1060)
T ss_pred HhCCCHHHHHHHHHHHHH
Confidence 555555555555555543
No 248
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=96.73 E-value=0.036 Score=46.07 Aligned_cols=93 Identities=18% Similarity=0.286 Sum_probs=71.4
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCC------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-------CC
Q 007401 494 EKGNAAFKGKQWNKAVNYYSEAIKLNGT------------SATYYSNRAAAYLELGCFQQAEEDCSKTISL-------DK 554 (605)
Q Consensus 494 ~~g~~~~~~g~~~~A~~~~~~al~~~p~------------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-------~p 554 (605)
..|...++.|.|++|...|.+++...-. ++-++..++.++..+|+|++++....+++.. +.
T Consensus 14 s~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~q 93 (144)
T PF12968_consen 14 SDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQ 93 (144)
T ss_dssp HHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTS
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhcccccc
Confidence 4456667889999999999999986321 2456778899999999999988877777754 33
Q ss_pred CC----HHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q 007401 555 KN----VKAYLRRGTAREALFCYNEALQDFKHAMVL 586 (605)
Q Consensus 555 ~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 586 (605)
+. ..+.++++.++..+|+.++|++.|+++-++
T Consensus 94 deGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM 129 (144)
T PF12968_consen 94 DEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM 129 (144)
T ss_dssp THHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 33 457788999999999999999999988654
No 249
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=96.71 E-value=0.017 Score=63.56 Aligned_cols=103 Identities=14% Similarity=0.013 Sum_probs=91.3
Q ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHH
Q 007401 498 AAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEAL 577 (605)
Q Consensus 498 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 577 (605)
.....+++.+|+....+.++..|+...+....|..+.++|.+++|..+++..-...+++-..+..+-.||..++++++|.
T Consensus 18 d~ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~ 97 (932)
T KOG2053|consen 18 DLLDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAV 97 (932)
T ss_pred HHhhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHH
Confidence 44667899999999999999999999999999999999999999998888877788888889999999999999999999
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHH
Q 007401 578 QDFKHAMVLEPQNKAANLAEKRLR 601 (605)
Q Consensus 578 ~~~~~al~~~p~~~~~~~~~~~~~ 601 (605)
.+|+++.+.+|+ .....++-.++
T Consensus 98 ~~Ye~~~~~~P~-eell~~lFmay 120 (932)
T KOG2053|consen 98 HLYERANQKYPS-EELLYHLFMAY 120 (932)
T ss_pred HHHHHHHhhCCc-HHHHHHHHHHH
Confidence 999999999998 65555544443
No 250
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.68 E-value=0.047 Score=49.82 Aligned_cols=101 Identities=15% Similarity=0.005 Sum_probs=79.4
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CHHHHHHHH
Q 007401 489 SELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTS---ATYYSNRAAAYLELGCFQQAEEDCSKTISLDKK-NVKAYLRRG 564 (605)
Q Consensus 489 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la 564 (605)
......++..++..+++++|+..++.++....+. +-+-.+++.+.++++.+++|++.+.... ++. .+.....+|
T Consensus 89 ~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~--~~~w~~~~~elrG 166 (207)
T COG2976 89 VLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIK--EESWAAIVAELRG 166 (207)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccc--cccHHHHHHHHhh
Confidence 3456678899999999999999999999754332 3455688999999999999998776532 221 123466799
Q ss_pred HHHHHccCHHHHHHHHHHHHHhCCCCH
Q 007401 565 TAREALFCYNEALQDFKHAMVLEPQNK 591 (605)
Q Consensus 565 ~~~~~~g~~~~A~~~~~~al~~~p~~~ 591 (605)
.++...|+.++|...|++++..+++..
T Consensus 167 Dill~kg~k~~Ar~ay~kAl~~~~s~~ 193 (207)
T COG2976 167 DILLAKGDKQEARAAYEKALESDASPA 193 (207)
T ss_pred hHHHHcCchHHHHHHHHHHHHccCChH
Confidence 999999999999999999999985443
No 251
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=96.66 E-value=0.06 Score=48.64 Aligned_cols=96 Identities=16% Similarity=0.077 Sum_probs=82.8
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 007401 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGT--SATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRG 564 (605)
Q Consensus 487 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la 564 (605)
.+...+..+++..+..+++.+|...+++..+.+|. .++....+|..+...|.+.+|...|+.++...| .+.+..+.+
T Consensus 122 ~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~yp-g~~ar~~Y~ 200 (251)
T COG4700 122 HDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYP-GPQARIYYA 200 (251)
T ss_pred CCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCC-CHHHHHHHH
Confidence 45778889999999999999999999999998885 467777888889999999999999999999998 577888889
Q ss_pred HHHHHccCHHHHHHHHHHH
Q 007401 565 TAREALFCYNEALQDFKHA 583 (605)
Q Consensus 565 ~~~~~~g~~~~A~~~~~~a 583 (605)
..+.++|+.++|...+...
T Consensus 201 e~La~qgr~~ea~aq~~~v 219 (251)
T COG4700 201 EMLAKQGRLREANAQYVAV 219 (251)
T ss_pred HHHHHhcchhHHHHHHHHH
Confidence 9999999887776655443
No 252
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.56 E-value=0.016 Score=62.19 Aligned_cols=103 Identities=15% Similarity=0.026 Sum_probs=83.4
Q ss_pred ChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-HHH
Q 007401 485 SIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGT----SATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKN-VKA 559 (605)
Q Consensus 485 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~-~~~ 559 (605)
.|+.+-.++..|..+..+|+.++|++.|++++....+ ..-.++.++++++.+.+|++|.+++.+..+.+.-+ .-.
T Consensus 263 yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y 342 (468)
T PF10300_consen 263 YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFY 342 (468)
T ss_pred CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHH
Confidence 4667788889999999999999999999998854322 34578899999999999999999999998865432 235
Q ss_pred HHHHHHHHHHccCH-------HHHHHHHHHHHHhC
Q 007401 560 YLRRGTAREALFCY-------NEALQDFKHAMVLE 587 (605)
Q Consensus 560 ~~~la~~~~~~g~~-------~~A~~~~~~al~~~ 587 (605)
.|..|.|+...++. ++|.+.|+++-.+.
T Consensus 343 ~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~ 377 (468)
T PF10300_consen 343 AYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLK 377 (468)
T ss_pred HHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHH
Confidence 55578899999999 88888888876554
No 253
>PLN03218 maturation of RBCL 1; Provisional
Probab=96.55 E-value=0.067 Score=62.98 Aligned_cols=97 Identities=11% Similarity=-0.003 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHH
Q 007401 489 SELLKEKGNAAFKGKQWNKAVNYYSEAIKL----NGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLD-KKNVKAYLRR 563 (605)
Q Consensus 489 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l 563 (605)
...|..+-..+.+.|++++|.+.|++.... .|+ ...|..+-..|.+.|++++|.+.|++..+.+ +.+...|..+
T Consensus 542 ~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD-~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsL 620 (1060)
T PLN03218 542 RVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPD-HITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIA 620 (1060)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCc-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHH
Confidence 344555556666666666666666665432 222 3455555566666666666666666666554 3345566666
Q ss_pred HHHHHHccCHHHHHHHHHHHHHh
Q 007401 564 GTAREALFCYNEALQDFKHAMVL 586 (605)
Q Consensus 564 a~~~~~~g~~~~A~~~~~~al~~ 586 (605)
...|.+.|++++|++.|++..+.
T Consensus 621 I~ay~k~G~~deAl~lf~eM~~~ 643 (1060)
T PLN03218 621 VNSCSQKGDWDFALSIYDDMKKK 643 (1060)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHc
Confidence 66666666666666666666554
No 254
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.55 E-value=0.019 Score=60.85 Aligned_cols=98 Identities=19% Similarity=0.139 Sum_probs=87.1
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 007401 490 ELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTS------ATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRR 563 (605)
Q Consensus 490 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 563 (605)
..+++.|..+|+.++|..+++.|...+..-|.+ +....+++.||+.+.+.++|.++++.|-+.||+++-.-+..
T Consensus 355 ~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~ 434 (872)
T KOG4814|consen 355 TLLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLM 434 (872)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHH
Confidence 467788999999999999999999999876654 66788999999999999999999999999999999888888
Q ss_pred HHHHHHccCHHHHHHHHHHHHHhC
Q 007401 564 GTAREALFCYNEALQDFKHAMVLE 587 (605)
Q Consensus 564 a~~~~~~g~~~~A~~~~~~al~~~ 587 (605)
-.+....++-++|+.+..+.....
T Consensus 435 ~~~~~~E~~Se~AL~~~~~~~s~~ 458 (872)
T KOG4814|consen 435 LQSFLAEDKSEEALTCLQKIKSSE 458 (872)
T ss_pred HHHHHHhcchHHHHHHHHHHHhhh
Confidence 888889999999999988876554
No 255
>PRK04841 transcriptional regulator MalT; Provisional
Probab=96.53 E-value=0.047 Score=64.35 Aligned_cols=100 Identities=12% Similarity=0.015 Sum_probs=72.4
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC------
Q 007401 488 ASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGT------SATYYSNRAAAYLELGCFQQAEEDCSKTISLDKK------ 555 (605)
Q Consensus 488 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~------ 555 (605)
....+..+|..+...|++++|...+++++..... ....+.++|.+++..|++++|...+++++.+-..
T Consensus 490 ~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~ 569 (903)
T PRK04841 490 RIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQL 569 (903)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccc
Confidence 3455677788888888888888888888765322 1345667788888888888888888888775211
Q ss_pred --CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Q 007401 556 --NVKAYLRRGTAREALFCYNEALQDFKHAMVLE 587 (605)
Q Consensus 556 --~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 587 (605)
....+..+|.++...|++++|...+++++.+.
T Consensus 570 ~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~ 603 (903)
T PRK04841 570 PMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVL 603 (903)
T ss_pred cHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhh
Confidence 12345567888888888888888888887753
No 256
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.50 E-value=0.074 Score=52.38 Aligned_cols=107 Identities=11% Similarity=-0.026 Sum_probs=59.7
Q ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCCH---HHHHHHHHHHHHcc
Q 007401 496 GNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISL-DKKNV---KAYLRRGTAREALF 571 (605)
Q Consensus 496 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-~p~~~---~~~~~la~~~~~~g 571 (605)
+..++..|++.+|-...++.++-.|.+--++..-=.+|+.+|+...-...+++.+-. +++-| ...-.++.++.+.|
T Consensus 110 aai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g 189 (491)
T KOG2610|consen 110 AAILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECG 189 (491)
T ss_pred HHHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhc
Confidence 334455566666666666666666666555555555555566655555555555544 44432 23333455556666
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 007401 572 CYNEALQDFKHAMVLEPQNKAANLAEKRLRK 602 (605)
Q Consensus 572 ~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 602 (605)
-|++|.+.-++++++++.|..+....+.+++
T Consensus 190 ~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVle 220 (491)
T KOG2610|consen 190 IYDDAEKQADRALQINRFDCWASHAKAHVLE 220 (491)
T ss_pred cchhHHHHHHhhccCCCcchHHHHHHHHHHH
Confidence 6666666666666666666555555544443
No 257
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=96.48 E-value=0.037 Score=56.89 Aligned_cols=108 Identities=14% Similarity=0.071 Sum_probs=100.2
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 007401 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTA 566 (605)
Q Consensus 487 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~ 566 (605)
-....|...|.--..++++..|-..|++|+..+..+..+|...+.+-++..+...|...+++|+.+-|.--+.||..-..
T Consensus 71 ~~~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ym 150 (677)
T KOG1915|consen 71 LNMQVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYM 150 (677)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 35678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHccCHHHHHHHHHHHHHhCCCCHHHH
Q 007401 567 REALFCYNEALQDFKHAMVLEPQNKAAN 594 (605)
Q Consensus 567 ~~~~g~~~~A~~~~~~al~~~p~~~~~~ 594 (605)
-..+|+..-|.+.|++-++..|+....+
T Consensus 151 EE~LgNi~gaRqiferW~~w~P~eqaW~ 178 (677)
T KOG1915|consen 151 EEMLGNIAGARQIFERWMEWEPDEQAWL 178 (677)
T ss_pred HHHhcccHHHHHHHHHHHcCCCcHHHHH
Confidence 9999999999999999999999754433
No 258
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.48 E-value=0.048 Score=51.04 Aligned_cols=110 Identities=21% Similarity=0.192 Sum_probs=82.2
Q ss_pred ChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHH-cCCHHHHHHHHHHHHhcCCCC-
Q 007401 485 SIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTS------ATYYSNRAAAYLE-LGCFQQAEEDCSKTISLDKKN- 556 (605)
Q Consensus 485 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~-~~~~~~A~~~~~~al~~~p~~- 556 (605)
..+.+..|...+++ ++..+.++|+.+++++|++..+. +..+..+|.+|-. +.++++|+.+|+++-......
T Consensus 70 khDaat~YveA~~c-ykk~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ee 148 (288)
T KOG1586|consen 70 KHDAATTYVEAANC-YKKVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEE 148 (288)
T ss_pred chhHHHHHHHHHHH-hhccChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchh
Confidence 34456666665655 45669999999999999987654 3345578888865 488999999999987654322
Q ss_pred -----HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHH
Q 007401 557 -----VKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAANL 595 (605)
Q Consensus 557 -----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 595 (605)
-+.+...+..-.++++|.+|+..|++..+..-+|.-..+
T Consensus 149 s~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKy 192 (288)
T KOG1586|consen 149 SVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKY 192 (288)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHh
Confidence 246666777788999999999999999887766655443
No 259
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.44 E-value=0.03 Score=60.14 Aligned_cols=95 Identities=16% Similarity=0.058 Sum_probs=80.3
Q ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH----HHHHHHHHHHHHccCHHHHH
Q 007401 502 GKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNV----KAYLRRGTAREALFCYNEAL 577 (605)
Q Consensus 502 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~g~~~~A~ 577 (605)
..+.+.|.+.+++..+..|+..-.++..|..+...++.++|++.|++++....+.. -.++.++.++..+.+|++|.
T Consensus 246 ~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~ 325 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAA 325 (468)
T ss_pred CCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHH
Confidence 55778899999999999999999999999999999999999999999986444332 37888999999999999999
Q ss_pred HHHHHHHHhCCCCHHHHHH
Q 007401 578 QDFKHAMVLEPQNKAANLA 596 (605)
Q Consensus 578 ~~~~~al~~~p~~~~~~~~ 596 (605)
++|.+..+.+.-....+.+
T Consensus 326 ~~f~~L~~~s~WSka~Y~Y 344 (468)
T PF10300_consen 326 EYFLRLLKESKWSKAFYAY 344 (468)
T ss_pred HHHHHHHhccccHHHHHHH
Confidence 9999999876443333333
No 260
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=96.44 E-value=0.0058 Score=38.65 Aligned_cols=31 Identities=26% Similarity=0.285 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Q 007401 559 AYLRRGTAREALFCYNEALQDFKHAMVLEPQ 589 (605)
Q Consensus 559 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 589 (605)
+++++|.++...|++++|++.|+++++..|+
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 4556666666666666666666666666654
No 261
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=96.42 E-value=0.031 Score=63.76 Aligned_cols=96 Identities=7% Similarity=-0.073 Sum_probs=77.7
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 007401 489 SELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTARE 568 (605)
Q Consensus 489 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 568 (605)
...|..+...+.+.|++++|.+.+++. ...| +...|..+...+...|+++.|...+++.++++|++...|..+..+|.
T Consensus 462 ~~~y~~li~~l~r~G~~~eA~~~~~~~-~~~p-~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~ 539 (697)
T PLN03081 462 AMHYACMIELLGREGLLDEAYAMIRRA-PFKP-TVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYN 539 (697)
T ss_pred ccchHhHHHHHHhcCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHH
Confidence 345777788888889999998888764 2233 45668888888888899999999999999999988888888999999
Q ss_pred HccCHHHHHHHHHHHHHh
Q 007401 569 ALFCYNEALQDFKHAMVL 586 (605)
Q Consensus 569 ~~g~~~~A~~~~~~al~~ 586 (605)
+.|++++|.+.+++..+.
T Consensus 540 ~~G~~~~A~~v~~~m~~~ 557 (697)
T PLN03081 540 SSGRQAEAAKVVETLKRK 557 (697)
T ss_pred hCCCHHHHHHHHHHHHHc
Confidence 999999999988877654
No 262
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.41 E-value=0.023 Score=50.53 Aligned_cols=64 Identities=14% Similarity=0.118 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 007401 489 SELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISL 552 (605)
Q Consensus 489 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 552 (605)
...+..++..+...|++++|+..+++++..+|.+..++..+-.+|...|++.+|++.|++..+.
T Consensus 62 ~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~ 125 (146)
T PF03704_consen 62 LDALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRR 125 (146)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 4566677888899999999999999999999999999999999999999999999999887543
No 263
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.39 E-value=0.085 Score=50.51 Aligned_cols=115 Identities=13% Similarity=0.027 Sum_probs=90.7
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 007401 489 SELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLEL----GCFQQAEEDCSKTISLDKKNVKAYLRRG 564 (605)
Q Consensus 489 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~----~~~~~A~~~~~~al~~~p~~~~~~~~la 564 (605)
.+.....-.++.+..+++-|...+++..+++.+ ..+..+|..+..+ +.+..|.-.|+..-...+..+....-++
T Consensus 137 lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ided--~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~A 214 (299)
T KOG3081|consen 137 LEAAALNVQILLKMHRFDLAEKELKKMQQIDED--ATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQA 214 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHccchH--HHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHH
Confidence 344444566778888888888888888777543 4555566666543 3588999999998876777899999999
Q ss_pred HHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhhC
Q 007401 565 TAREALFCYNEALQDFKHAMVLEPQNKAANLAEKRLRKLIG 605 (605)
Q Consensus 565 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g 605 (605)
.|+..+++|++|...++.+|..+++++..+.++--+-..+|
T Consensus 215 v~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~G 255 (299)
T KOG3081|consen 215 VCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLG 255 (299)
T ss_pred HHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999998888766554443
No 264
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=96.39 E-value=0.077 Score=52.96 Aligned_cols=101 Identities=14% Similarity=-0.022 Sum_probs=85.9
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 007401 491 LLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLE-LGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREA 569 (605)
Q Consensus 491 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 569 (605)
.|..+.+...+.+..+.|-..|.++.+..+...++|...|...++ .++.+.|.+.|+++++..|.+...|.....-+..
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~ 82 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIK 82 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 467777777788889999999999997666778999999999777 5667779999999999999999999999999999
Q ss_pred ccCHHHHHHHHHHHHHhCCCCH
Q 007401 570 LFCYNEALQDFKHAMVLEPQNK 591 (605)
Q Consensus 570 ~g~~~~A~~~~~~al~~~p~~~ 591 (605)
.++.++|...|++++..-+.+.
T Consensus 83 ~~d~~~aR~lfer~i~~l~~~~ 104 (280)
T PF05843_consen 83 LNDINNARALFERAISSLPKEK 104 (280)
T ss_dssp TT-HHHHHHHHHHHCCTSSCHH
T ss_pred hCcHHHHHHHHHHHHHhcCchh
Confidence 9999999999999998877655
No 265
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=96.39 E-value=0.016 Score=56.94 Aligned_cols=81 Identities=22% Similarity=0.272 Sum_probs=69.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC----CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 007401 523 ATYYSNRAAAYLELGCFQQAEEDCSKTISLDKK----NVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAANLAEK 598 (605)
Q Consensus 523 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 598 (605)
+.-|..-|+-|++..+|..|+..|.+.|+..-. |+..|.|++-|.+.+|+|..|+..+.++++++|.+..++..-+
T Consensus 81 Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~A 160 (390)
T KOG0551|consen 81 AENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGA 160 (390)
T ss_pred HHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhh
Confidence 455666799999999999999999999987543 4668999999999999999999999999999999988777666
Q ss_pred HHHHh
Q 007401 599 RLRKL 603 (605)
Q Consensus 599 ~~~~~ 603 (605)
.++..
T Consensus 161 kc~~e 165 (390)
T KOG0551|consen 161 KCLLE 165 (390)
T ss_pred HHHHH
Confidence 66543
No 266
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=96.34 E-value=0.02 Score=40.78 Aligned_cols=43 Identities=16% Similarity=0.231 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 007401 524 TYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTA 566 (605)
Q Consensus 524 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~ 566 (605)
+.++.+|..++++++|.+|.++++.+++++|+|.++......+
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i 44 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKELI 44 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Confidence 4567788888888888888888888888888887766554443
No 267
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=96.30 E-value=0.014 Score=56.62 Aligned_cols=69 Identities=22% Similarity=0.200 Sum_probs=63.0
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 007401 531 AAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAANLAEKR 599 (605)
Q Consensus 531 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~ 599 (605)
.-..+.|+.++|...|+.|++++|.+++++..+|......++.-+|-++|-+++.++|.|..++.+..+
T Consensus 124 ~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~R 192 (472)
T KOG3824|consen 124 GRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRAR 192 (472)
T ss_pred HHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhc
Confidence 334578899999999999999999999999999999999999999999999999999999998877654
No 268
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=96.27 E-value=0.042 Score=57.15 Aligned_cols=109 Identities=14% Similarity=0.060 Sum_probs=85.3
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCCHHHHHHHHH
Q 007401 489 SELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGT--SATYYSNRAAAYLELGCFQQAEEDCSKTISL-DKKNVKAYLRRGT 565 (605)
Q Consensus 489 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~la~ 565 (605)
...-..+|.++.+.|+.+||++.|++.++..|. +..+..++-.+++.++.|.++...+.+-=.+ -|+++...|..+.
T Consensus 259 ~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaAL 338 (539)
T PF04184_consen 259 VYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAAL 338 (539)
T ss_pred hhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHH
Confidence 445567899999999999999999999987765 5778999999999999999999988885333 2566777777776
Q ss_pred HHHHc-cC---------------HHHHHHHHHHHHHhCCCCHHHHHHH
Q 007401 566 AREAL-FC---------------YNEALQDFKHAMVLEPQNKAANLAE 597 (605)
Q Consensus 566 ~~~~~-g~---------------~~~A~~~~~~al~~~p~~~~~~~~~ 597 (605)
...+. ++ ...|.+.+.+|++.||+-+..+..+
T Consensus 339 LkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~YLLe~ 386 (539)
T PF04184_consen 339 LKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKYLLEM 386 (539)
T ss_pred HHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchhhhcc
Confidence 55332 22 2457889999999999887665443
No 269
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=96.22 E-value=0.0082 Score=37.93 Aligned_cols=30 Identities=20% Similarity=0.348 Sum_probs=14.9
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Q 007401 492 LKEKGNAAFKGKQWNKAVNYYSEAIKLNGT 521 (605)
Q Consensus 492 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~ 521 (605)
++.+|.++.+.|++++|++.|+++++..|+
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 444455555555555555555555554443
No 270
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=96.22 E-value=0.053 Score=51.51 Aligned_cols=92 Identities=18% Similarity=0.146 Sum_probs=69.3
Q ss_pred HHCCCHHHHHHHHHHHHHh----CCC---CHHHHHHHHHHHHHcCC-------HHHHHHHHHHHHhcCCC------CHHH
Q 007401 500 FKGKQWNKAVNYYSEAIKL----NGT---SATYYSNRAAAYLELGC-------FQQAEEDCSKTISLDKK------NVKA 559 (605)
Q Consensus 500 ~~~g~~~~A~~~~~~al~~----~p~---~~~~~~~la~~~~~~~~-------~~~A~~~~~~al~~~p~------~~~~ 559 (605)
-....+++|++.|.-|+.. ..+ -+..+..+|++|..+++ +.+|.+.|.++++.+.. ....
T Consensus 88 ~~~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l 167 (214)
T PF09986_consen 88 SGERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATL 167 (214)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHH
Confidence 3455778888888777643 111 26778889999999888 56677777777766532 2568
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH
Q 007401 560 YLRRGTAREALFCYNEALQDFKHAMVLEPQNK 591 (605)
Q Consensus 560 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 591 (605)
.|.+|.++.+.|++++|..+|.+.+.......
T Consensus 168 ~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s~ 199 (214)
T PF09986_consen 168 LYLIGELNRRLGNYDEAKRWFSRVIGSKKASK 199 (214)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHcCCCCCC
Confidence 89999999999999999999999998654443
No 271
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.22 E-value=0.052 Score=50.83 Aligned_cols=104 Identities=13% Similarity=0.082 Sum_probs=80.6
Q ss_pred HHHHHHHHHHHHHC-CCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH---
Q 007401 489 SELLKEKGNAAFKG-KQWNKAVNYYSEAIKLNGTS------ATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVK--- 558 (605)
Q Consensus 489 a~~~~~~g~~~~~~-g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~--- 558 (605)
+..+..+|..|... .++++|+.+|+++-+..... -.++..-++.-.++++|.+|++.|++..+-.-+|.-
T Consensus 113 Ak~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKy 192 (288)
T KOG1586|consen 113 AKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKY 192 (288)
T ss_pred HhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHh
Confidence 56677888888765 89999999999998764332 245556677777899999999999998766544432
Q ss_pred ----HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHH
Q 007401 559 ----AYLRRGTAREALFCYNEALQDFKHAMVLEPQNKA 592 (605)
Q Consensus 559 ----~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 592 (605)
.++.-|.|++...+.-.+...+++..+++|....
T Consensus 193 s~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~d 230 (288)
T KOG1586|consen 193 SAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTD 230 (288)
T ss_pred HHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCcccc
Confidence 5566788898889988899999999999997543
No 272
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=96.22 E-value=0.0092 Score=38.87 Aligned_cols=25 Identities=16% Similarity=0.212 Sum_probs=14.1
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHH
Q 007401 560 YLRRGTAREALFCYNEALQDFKHAM 584 (605)
Q Consensus 560 ~~~la~~~~~~g~~~~A~~~~~~al 584 (605)
|.++|.+|.++|+|++|+++|++++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4556666666666666666666633
No 273
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=96.21 E-value=0.0034 Score=64.64 Aligned_cols=86 Identities=21% Similarity=0.239 Sum_probs=79.2
Q ss_pred ChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 007401 485 SIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRG 564 (605)
Q Consensus 485 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la 564 (605)
.++.+..+-+.+..+.+.++|..|+.-..++|+++|....+|+.+|.+++.+++|.+|..+|++...+.|+.+++...+-
T Consensus 34 dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~~A~~~l~~~~~l~Pnd~~~~r~~~ 113 (476)
T KOG0376|consen 34 DPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFKKALLDLEKVKKLAPNDPDATRKID 113 (476)
T ss_pred CCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHHHHHHHHHHhhhcCcCcHHHHHHHH
Confidence 45667788888999999999999999999999999999999999999999999999999999999999999999988888
Q ss_pred HHHHHc
Q 007401 565 TAREAL 570 (605)
Q Consensus 565 ~~~~~~ 570 (605)
.|-...
T Consensus 114 Ec~~~v 119 (476)
T KOG0376|consen 114 ECNKIV 119 (476)
T ss_pred HHHHHH
Confidence 876544
No 274
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=96.20 E-value=0.038 Score=62.97 Aligned_cols=113 Identities=9% Similarity=-0.054 Sum_probs=75.5
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 007401 490 ELLKEKGNAAFKGKQWNKAVNYYSEAIKLNG--TSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAR 567 (605)
Q Consensus 490 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 567 (605)
..+..+-..+.+.|+.++|.++|++..+..+ -+...|..+...|.+.|++++|.+.+++. ...| +...|..+..++
T Consensus 427 ~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~-~~~p-~~~~~~~Ll~a~ 504 (697)
T PLN03081 427 VTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA-PFKP-TVNMWAALLTAC 504 (697)
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHH
Confidence 3355555556666666666666666654321 12345666777777777777777776653 2333 456788888888
Q ss_pred HHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhh
Q 007401 568 EALFCYNEALQDFKHAMVLEPQNKAANLAEKRLRKLI 604 (605)
Q Consensus 568 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~ 604 (605)
...|+++.|...+++.++++|++...+..+..++...
T Consensus 505 ~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~ 541 (697)
T PLN03081 505 RIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSS 541 (697)
T ss_pred HHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhC
Confidence 8888888888888888888888777776666666544
No 275
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=96.13 E-value=0.098 Score=48.20 Aligned_cols=101 Identities=18% Similarity=0.105 Sum_probs=80.6
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC--CCHH---
Q 007401 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGT---SATYYSNRAAAYLELGCFQQAEEDCSKTISLDK--KNVK--- 558 (605)
Q Consensus 487 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p--~~~~--- 558 (605)
+--..+..+|+.|.+.|++++|++.|.++...... -.+.+.++-.+.+..+++.....++.++-.+-. .++.
T Consensus 34 sir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~n 113 (177)
T PF10602_consen 34 SIRMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRN 113 (177)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHH
Confidence 44578999999999999999999999998876533 356778888888899999999999999877633 2332
Q ss_pred -HHHHHHHHHHHccCHHHHHHHHHHHHHhC
Q 007401 559 -AYLRRGTAREALFCYNEALQDFKHAMVLE 587 (605)
Q Consensus 559 -~~~~la~~~~~~g~~~~A~~~~~~al~~~ 587 (605)
.....|..+...++|.+|.+.|-.+..-.
T Consensus 114 rlk~~~gL~~l~~r~f~~AA~~fl~~~~t~ 143 (177)
T PF10602_consen 114 RLKVYEGLANLAQRDFKEAAELFLDSLSTF 143 (177)
T ss_pred HHHHHHHHHHHHhchHHHHHHHHHccCcCC
Confidence 44557788889999999999887765443
No 276
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=96.07 E-value=0.012 Score=38.23 Aligned_cols=25 Identities=28% Similarity=0.559 Sum_probs=14.8
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHH
Q 007401 492 LKEKGNAAFKGKQWNKAVNYYSEAI 516 (605)
Q Consensus 492 ~~~~g~~~~~~g~~~~A~~~~~~al 516 (605)
|.++|..+.+.|+|++|+++|++++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4556666666666666666666644
No 277
>PLN03077 Protein ECB2; Provisional
Probab=96.05 E-value=0.07 Score=62.44 Aligned_cols=103 Identities=10% Similarity=0.010 Sum_probs=48.8
Q ss_pred HHHCCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHH
Q 007401 499 AFKGKQWNKAVNYYSEAIKLNG--TSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEA 576 (605)
Q Consensus 499 ~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 576 (605)
+.+.|++++|.++|++..+..+ -+...|..+...+.+.|++++|.+.+++. ...| +...|..+-.++..-++.+.+
T Consensus 599 ~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~p-d~~~~~aLl~ac~~~~~~e~~ 676 (857)
T PLN03077 599 CSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM-PITP-DPAVWGALLNACRIHRHVELG 676 (857)
T ss_pred HhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHHcCChHHH
Confidence 3444444444444444432111 11234444444455555555555444442 2233 234444444444445555555
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 007401 577 LQDFKHAMVLEPQNKAANLAEKRLRKL 603 (605)
Q Consensus 577 ~~~~~~al~~~p~~~~~~~~~~~~~~~ 603 (605)
....+++++++|++...+..+..++..
T Consensus 677 e~~a~~l~~l~p~~~~~y~ll~n~ya~ 703 (857)
T PLN03077 677 ELAAQHIFELDPNSVGYYILLCNLYAD 703 (857)
T ss_pred HHHHHHHHhhCCCCcchHHHHHHHHHH
Confidence 555555666666666666666555544
No 278
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=96.03 E-value=0.089 Score=54.63 Aligned_cols=87 Identities=8% Similarity=0.036 Sum_probs=44.8
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccC-HHHHHHHHHHHHHhCC
Q 007401 510 NYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREALFC-YNEALQDFKHAMVLEP 588 (605)
Q Consensus 510 ~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~p 588 (605)
..|+.+....+.+...|.+......+.+.+.+-...|.+++..+|+++..|..-|.-.+..+. .+.|...|.++|+.+|
T Consensus 92 ~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~np 171 (568)
T KOG2396|consen 92 FLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLRFNP 171 (568)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcCC
Confidence 344445554555555555554444444445555555555555555555555555554444443 5555555555555555
Q ss_pred CCHHHHHH
Q 007401 589 QNKAANLA 596 (605)
Q Consensus 589 ~~~~~~~~ 596 (605)
+++..+..
T Consensus 172 dsp~Lw~e 179 (568)
T KOG2396|consen 172 DSPKLWKE 179 (568)
T ss_pred CChHHHHH
Confidence 55544443
No 279
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.00 E-value=0.075 Score=50.10 Aligned_cols=73 Identities=21% Similarity=0.203 Sum_probs=66.9
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHH
Q 007401 490 ELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLR 562 (605)
Q Consensus 490 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 562 (605)
-.+.++..+++..|+|-++++...+.+..+|.|..+|+.+|.++...=+.++|..++.++++++|.-..+..+
T Consensus 231 pLllNy~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasvVsr 303 (329)
T KOG0545|consen 231 PLLLNYCQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASVVSR 303 (329)
T ss_pred HHHHhHHHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHHHHH
Confidence 4677889999999999999999999999999999999999999999999999999999999999976655444
No 280
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=95.99 E-value=0.0099 Score=58.92 Aligned_cols=116 Identities=28% Similarity=0.345 Sum_probs=97.3
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-----------C--------CHHHHHHHHHHHHHcCCHHHHHHHHH
Q 007401 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNG-----------T--------SATYYSNRAAAYLELGCFQQAEEDCS 547 (605)
Q Consensus 487 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-----------~--------~~~~~~~la~~~~~~~~~~~A~~~~~ 547 (605)
...+...+.|+..++.++|++|..-|.++..... + -...+.+.+.+-+..+.+..|+....
T Consensus 220 ~~~~~~k~~~~~~~kk~~~~~a~~k~~k~~r~~~~~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~lk~~~~~~a~~~~~ 299 (372)
T KOG0546|consen 220 EREEKKKNIGNKEFKKQRYREALAKYRKALRYLSEQSRDREKEQENRIPPLRELRFSIRRNLAAVGLKVKGRGGARFRTN 299 (372)
T ss_pred hhhhhhhccchhhhhhccHhHHHHHHHHHhhhhcccccccccccccccccccccccccccchHHhcccccCCCcceeccc
Confidence 3445666778899999999999999999876321 1 12356678888899999999999999
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 007401 548 KTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAANLAEKRLRK 602 (605)
Q Consensus 548 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 602 (605)
.+++.+++...++|+++..+....++++|++.++.+....|++..+...+....+
T Consensus 300 ~~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~~~ 354 (372)
T KOG0546|consen 300 EALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENVRQ 354 (372)
T ss_pred cccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHhhh
Confidence 9999999999999999999999999999999999999999999888776665543
No 281
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=95.98 E-value=0.035 Score=44.70 Aligned_cols=65 Identities=18% Similarity=0.056 Sum_probs=45.0
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC--HHHHHHHHHHHHHccC
Q 007401 508 AVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKN--VKAYLRRGTAREALFC 572 (605)
Q Consensus 508 A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~ 572 (605)
.+..+++.+..+|++..+.+.+|..++..|++++|++.+-..++.++++ -.+.-.+-.++..+|.
T Consensus 7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~ 73 (90)
T PF14561_consen 7 DIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGP 73 (90)
T ss_dssp HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-T
T ss_pred cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCC
Confidence 4567788888889999999999999999999999999888888888765 2333334444444443
No 282
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=95.92 E-value=0.012 Score=36.25 Aligned_cols=30 Identities=37% Similarity=0.490 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Q 007401 559 AYLRRGTAREALFCYNEALQDFKHAMVLEP 588 (605)
Q Consensus 559 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p 588 (605)
+|+++|.++..++++++|..+|+++++++|
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 344555555555555555555555554444
No 283
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=95.92 E-value=0.011 Score=54.97 Aligned_cols=58 Identities=17% Similarity=0.200 Sum_probs=36.2
Q ss_pred HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 007401 499 AFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKN 556 (605)
Q Consensus 499 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~ 556 (605)
..+.++.+.|.+.|++++.+.|+...-|+.+|....+.|+++.|.+.|++.+++||.+
T Consensus 5 ~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 5 LAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred hcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 3455666666666666666666666666666666666666666666666666666654
No 284
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=95.90 E-value=0.23 Score=57.69 Aligned_cols=105 Identities=11% Similarity=-0.062 Sum_probs=60.5
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHccC
Q 007401 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKK--NVKAYLRRGTAREALFC 572 (605)
Q Consensus 495 ~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~ 572 (605)
+..+|.+-+++++|.++|+..++...+....|..++..++..++-++|...+.+|++.-|. +.+..-..|...++.|+
T Consensus 1536 L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GD 1615 (1710)
T KOG1070|consen 1536 LLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGD 1615 (1710)
T ss_pred HHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCC
Confidence 3444555555566666666655555555556666666666665556666666666655554 44555555666666666
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 007401 573 YNEALQDFKHAMVLEPQNKAANLAEKR 599 (605)
Q Consensus 573 ~~~A~~~~~~al~~~p~~~~~~~~~~~ 599 (605)
-+.+...|+-.+.-+|.-...|..+..
T Consensus 1616 aeRGRtlfEgll~ayPKRtDlW~VYid 1642 (1710)
T KOG1070|consen 1616 AERGRTLFEGLLSAYPKRTDLWSVYID 1642 (1710)
T ss_pred chhhHHHHHHHHhhCccchhHHHHHHH
Confidence 666666666666666655555544443
No 285
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=95.89 E-value=0.041 Score=54.70 Aligned_cols=102 Identities=19% Similarity=0.160 Sum_probs=84.8
Q ss_pred hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC----------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--
Q 007401 486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGT----------SATYYSNRAAAYLELGCFQQAEEDCSKTISLD-- 553 (605)
Q Consensus 486 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~----------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-- 553 (605)
.-+.+.+..+|..+-+.+||++|+-+..++.++..+ ...+++.++..+..+|+.-.|.++++.+.++.
T Consensus 159 ~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~ 238 (518)
T KOG1941|consen 159 MLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQ 238 (518)
T ss_pred eeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHH
Confidence 345788999999999999999999999999886432 14577889999999999999999999998773
Q ss_pred ----CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Q 007401 554 ----KKNVKAYLRRGTAREALFCYNEALQDFKHAMVLE 587 (605)
Q Consensus 554 ----p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 587 (605)
+-.......+|.+|...|+.+.|..-|+.+....
T Consensus 239 ~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m 276 (518)
T KOG1941|consen 239 HGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTM 276 (518)
T ss_pred hCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHH
Confidence 2234566779999999999999999999987654
No 286
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=95.83 E-value=0.014 Score=35.91 Aligned_cols=31 Identities=35% Similarity=0.474 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 007401 525 YYSNRAAAYLELGCFQQAEEDCSKTISLDKK 555 (605)
Q Consensus 525 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~ 555 (605)
.++.+|.+++.++++++|+.+++++++++|+
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 4556666666666666666666666665553
No 287
>PLN03077 Protein ECB2; Provisional
Probab=95.81 E-value=0.075 Score=62.22 Aligned_cols=96 Identities=10% Similarity=-0.004 Sum_probs=83.8
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 007401 489 SELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTARE 568 (605)
Q Consensus 489 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 568 (605)
...|..+...+.+.|++++|.+.+++. ...|+ ...|..+-..+...++.+.+....+++++++|++...|..++.+|.
T Consensus 625 ~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~pd-~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya 702 (857)
T PLN03077 625 LKHYACVVDLLGRAGKLTEAYNFINKM-PITPD-PAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYA 702 (857)
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHH
Confidence 567889999999999999999999985 34555 5677777777778899999999999999999999999999999999
Q ss_pred HccCHHHHHHHHHHHHHh
Q 007401 569 ALFCYNEALQDFKHAMVL 586 (605)
Q Consensus 569 ~~g~~~~A~~~~~~al~~ 586 (605)
..|++++|.+..+...+.
T Consensus 703 ~~g~~~~a~~vr~~M~~~ 720 (857)
T PLN03077 703 DAGKWDEVARVRKTMREN 720 (857)
T ss_pred HCCChHHHHHHHHHHHHc
Confidence 999999999988877643
No 288
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=95.77 E-value=0.19 Score=58.37 Aligned_cols=100 Identities=10% Similarity=-0.010 Sum_probs=78.6
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 007401 488 ASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGT--SATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGT 565 (605)
Q Consensus 488 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~ 565 (605)
....|..+|..++++.+-++|...+++|++--|. +.+....-|+.-++.|+-+.+...|+..+..+|.-.+.|.-+..
T Consensus 1563 ~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid 1642 (1710)
T KOG1070|consen 1563 TRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYID 1642 (1710)
T ss_pred hhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHH
Confidence 4567777888888888888888888888887776 56666777888888888888888888888888888888888887
Q ss_pred HHHHccCHHHHHHHHHHHHHhC
Q 007401 566 AREALFCYNEALQDFKHAMVLE 587 (605)
Q Consensus 566 ~~~~~g~~~~A~~~~~~al~~~ 587 (605)
.-.+.|+.+.....|++++.+.
T Consensus 1643 ~eik~~~~~~vR~lfeRvi~l~ 1664 (1710)
T KOG1070|consen 1643 MEIKHGDIKYVRDLFERVIELK 1664 (1710)
T ss_pred HHHccCCHHHHHHHHHHHHhcC
Confidence 7778888888888888887664
No 289
>PRK04841 transcriptional regulator MalT; Provisional
Probab=95.74 E-value=0.14 Score=60.36 Aligned_cols=99 Identities=13% Similarity=-0.007 Sum_probs=81.5
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--C----
Q 007401 488 ASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTS-----ATYYSNRAAAYLELGCFQQAEEDCSKTISLDKK--N---- 556 (605)
Q Consensus 488 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~--~---- 556 (605)
.......++..++..|++++|...+++++...+.. ..++..+|.++...|++++|...+++++..... +
T Consensus 451 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~ 530 (903)
T PRK04841 451 QAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYA 530 (903)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHH
Confidence 34555668899999999999999999999854442 245678899999999999999999999876332 1
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q 007401 557 VKAYLRRGTAREALFCYNEALQDFKHAMVL 586 (605)
Q Consensus 557 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 586 (605)
..++.+++.++...|++++|...+++++++
T Consensus 531 ~~~~~~la~~~~~~G~~~~A~~~~~~al~~ 560 (903)
T PRK04841 531 LWSLLQQSEILFAQGFLQAAYETQEKAFQL 560 (903)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 246678899999999999999999999886
No 290
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=95.72 E-value=0.13 Score=41.51 Aligned_cols=63 Identities=16% Similarity=0.092 Sum_probs=47.0
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHhh
Q 007401 542 AEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQN--KAANLAEKRLRKLI 604 (605)
Q Consensus 542 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~~~~~~~~~ 604 (605)
.+..+++.++.+|++..+.+.+|..+...|++++|++.+-..++.++++ ..+...+-.+...+
T Consensus 7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~l 71 (90)
T PF14561_consen 7 DIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELL 71 (90)
T ss_dssp HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHc
Confidence 3566888899999999999999999999999999999999999888755 45555555554443
No 291
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=95.53 E-value=0.11 Score=52.64 Aligned_cols=89 Identities=18% Similarity=0.228 Sum_probs=68.8
Q ss_pred HHHHHHCCCHHHHHHHHHHHHHhC--------CCC----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH
Q 007401 496 GNAAFKGKQWNKAVNYYSEAIKLN--------GTS----------ATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNV 557 (605)
Q Consensus 496 g~~~~~~g~~~~A~~~~~~al~~~--------p~~----------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~ 557 (605)
|..++++++|..|..-|..++++. |.. ..+--.+..||+.+++.+-|+....+.|.++|.++
T Consensus 183 as~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~lnP~~f 262 (569)
T PF15015_consen 183 ASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLNPSYF 262 (569)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcCcchh
Confidence 444555555555555555555542 111 23456789999999999999999999999999999
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHH
Q 007401 558 KAYLRRGTAREALFCYNEALQDFKHAM 584 (605)
Q Consensus 558 ~~~~~la~~~~~~g~~~~A~~~~~~al 584 (605)
..++..|.|+..+.+|.+|...+-.+.
T Consensus 263 rnHLrqAavfR~LeRy~eAarSamia~ 289 (569)
T PF15015_consen 263 RNHLRQAAVFRRLERYSEAARSAMIAD 289 (569)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999987766554
No 292
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=95.45 E-value=0.76 Score=47.19 Aligned_cols=39 Identities=18% Similarity=0.091 Sum_probs=30.3
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 007401 562 RRGTAREALFCYNEALQDFKHAMVLEPQNKAANLAEKRL 600 (605)
Q Consensus 562 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 600 (605)
.++.+..-.|++++|.+.+++++++.|........+..+
T Consensus 310 Tl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W~l~St~~ni 348 (374)
T PF13281_consen 310 TLLEASVLAGDYEKAIQAAEKAFKLKPPAWELESTLENI 348 (374)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHhhcCCcchhHHHHHHHH
Confidence 366677778999999999999999988776655555544
No 293
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=95.33 E-value=0.81 Score=40.15 Aligned_cols=89 Identities=10% Similarity=-0.159 Sum_probs=79.6
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 007401 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTA 566 (605)
Q Consensus 487 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~ 566 (605)
.-...+.+.........+.+++...+...--+.|+.+..-..-|.+++..+++.+|+..++......+..+..--.++.|
T Consensus 8 ~iv~gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~C 87 (153)
T TIGR02561 8 RLLGGLIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALC 87 (153)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHH
Confidence 34566777777778899999999999999899999999999999999999999999999999999888889888899999
Q ss_pred HHHccCHHH
Q 007401 567 REALFCYNE 575 (605)
Q Consensus 567 ~~~~g~~~~ 575 (605)
++.+|+.+-
T Consensus 88 L~al~Dp~W 96 (153)
T TIGR02561 88 LNAKGDAEW 96 (153)
T ss_pred HHhcCChHH
Confidence 999998654
No 294
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=95.28 E-value=0.23 Score=47.48 Aligned_cols=92 Identities=21% Similarity=0.148 Sum_probs=68.1
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHH
Q 007401 504 QWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQ-QAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKH 582 (605)
Q Consensus 504 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~-~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 582 (605)
+..+-++++.+.++-+|.|-.+|..+-.+.-.+++.. .-+++.+..+..|.+|-.+|..+-.+....+.|++-+++..+
T Consensus 93 dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rELef~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~ 172 (318)
T KOG0530|consen 93 DLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRELEFTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDELAYADE 172 (318)
T ss_pred HHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccchHHHHHHHHhccccchhhhHHHHHHHHHHhhHHHHHHHHHH
Confidence 5677777777777777777777777777777777766 667777777777777777887777777777777777777777
Q ss_pred HHHhCCCCHHHHH
Q 007401 583 AMVLEPQNKAANL 595 (605)
Q Consensus 583 al~~~p~~~~~~~ 595 (605)
.++.+--|-.++.
T Consensus 173 Lle~Di~NNSAWN 185 (318)
T KOG0530|consen 173 LLEEDIRNNSAWN 185 (318)
T ss_pred HHHHhhhccchhh
Confidence 7777655544443
No 295
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.22 E-value=0.54 Score=44.58 Aligned_cols=104 Identities=19% Similarity=0.166 Sum_probs=76.0
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-----CC
Q 007401 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTS------ATYYSNRAAAYLELGCFQQAEEDCSKTISLD-----KK 555 (605)
Q Consensus 487 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-----p~ 555 (605)
..+..|..-+..+-..++|++|..++.++++-..+| +..|-..+.....+..+.++..+|++|..+. |+
T Consensus 29 gaas~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~Gspd 108 (308)
T KOG1585|consen 29 GAASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPD 108 (308)
T ss_pred hhHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcc
Confidence 345667777777777899999999999999765554 4456666777777888999999999998874 32
Q ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC
Q 007401 556 NVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQN 590 (605)
Q Consensus 556 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 590 (605)
-+..-.-.+--..+.-+.++|++.|++++.+--++
T Consensus 109 tAAmaleKAak~lenv~Pd~AlqlYqralavve~~ 143 (308)
T KOG1585|consen 109 TAAMALEKAAKALENVKPDDALQLYQRALAVVEED 143 (308)
T ss_pred hHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhcc
Confidence 23333334444567778999999999998775443
No 296
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=95.19 E-value=0.024 Score=58.38 Aligned_cols=83 Identities=14% Similarity=0.121 Sum_probs=73.3
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh------------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 007401 488 ASELLKEKGNAAFKGKQWNKAVNYYSEAIKL------------------NGTSATYYSNRAAAYLELGCFQQAEEDCSKT 549 (605)
Q Consensus 488 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~------------------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a 549 (605)
....|.++|-++++.+.|..+..+|.++++. ....-+++||.|..|+..|+.-.|.++|.++
T Consensus 282 ~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~a 361 (696)
T KOG2471|consen 282 SCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKA 361 (696)
T ss_pred hheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHH
Confidence 4567889999999999999999999999961 1124678999999999999999999999999
Q ss_pred HhcCCCCHHHHHHHHHHHHHc
Q 007401 550 ISLDKKNVKAYLRRGTAREAL 570 (605)
Q Consensus 550 l~~~p~~~~~~~~la~~~~~~ 570 (605)
.+..-.||..|.+++.|....
T Consensus 362 v~vfh~nPrlWLRlAEcCima 382 (696)
T KOG2471|consen 362 VHVFHRNPRLWLRLAECCIMA 382 (696)
T ss_pred HHHHhcCcHHHHHHHHHHHHH
Confidence 999999999999999987554
No 297
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=95.14 E-value=0.27 Score=50.80 Aligned_cols=100 Identities=13% Similarity=0.084 Sum_probs=74.4
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 007401 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTA 566 (605)
Q Consensus 487 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~ 566 (605)
..+..|...+....++.+...|-..+-.||...|.+ ..+...-..-.++++++.+.+.|++-++-.|.|..+|...|..
T Consensus 402 tFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~-KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaEl 480 (677)
T KOG1915|consen 402 TFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKD-KLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSKYAEL 480 (677)
T ss_pred hHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCch-hHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHH
Confidence 456777777777777888888888888888777775 4444555556677788888888888888888888888888877
Q ss_pred HHHccCHHHHHHHHHHHHHhC
Q 007401 567 REALFCYNEALQDFKHAMVLE 587 (605)
Q Consensus 567 ~~~~g~~~~A~~~~~~al~~~ 587 (605)
-..+|+.+.|...|+-|++..
T Consensus 481 E~~LgdtdRaRaifelAi~qp 501 (677)
T KOG1915|consen 481 ETSLGDTDRARAIFELAISQP 501 (677)
T ss_pred HHHhhhHHHHHHHHHHHhcCc
Confidence 777777777777777776643
No 298
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=95.11 E-value=0.57 Score=49.92 Aligned_cols=117 Identities=17% Similarity=-0.096 Sum_probs=92.7
Q ss_pred CCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH-HHHhcCCCCHHHH
Q 007401 482 TNGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCS-KTISLDKKNVKAY 560 (605)
Q Consensus 482 ~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~-~al~~~p~~~~~~ 560 (605)
.+.+++..-..+ +...+...++...+.......+..+|+++.++.+++.+....+....+...+. .+....|+|.+..
T Consensus 61 ~~~~~~llla~~-lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~~~~~~~~~~~ 139 (620)
T COG3914 61 NDVNPELLLAAF-LSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEIAEWLSPDNAEFL 139 (620)
T ss_pred CCCCHHHHHHHH-HHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcchHHHH
Confidence 344455444444 67777888899899999999999999999999999999988776655555554 4899999998766
Q ss_pred HHH------HHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 007401 561 LRR------GTAREALFCYNEALQDFKHAMVLEPQNKAANLAEKR 599 (605)
Q Consensus 561 ~~l------a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~ 599 (605)
..+ +..+..+++..++...++++.++.|+++.....+..
T Consensus 140 ~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~~~~~~~ 184 (620)
T COG3914 140 GHLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKYPRVLGALMT 184 (620)
T ss_pred hhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhhhHhHHHH
Confidence 665 888888999999999999999999998766555443
No 299
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=95.10 E-value=0.034 Score=51.82 Aligned_cols=62 Identities=18% Similarity=0.284 Sum_probs=56.5
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHH
Q 007401 532 AYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAA 593 (605)
Q Consensus 532 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 593 (605)
...+.++.+.+.+.|.+++.+-|++...|+++|....+.|+++.|.+.|++.++++|++...
T Consensus 4 ~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~~g 65 (287)
T COG4976 4 MLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDHGG 65 (287)
T ss_pred hhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccccc
Confidence 34567889999999999999999999999999999999999999999999999999987543
No 300
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=95.10 E-value=0.15 Score=43.59 Aligned_cols=79 Identities=9% Similarity=0.043 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHHHCC---CHHHHHHHHHHHHH-hCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 007401 489 SELLKEKGNAAFKGK---QWNKAVNYYSEAIK-LNGT-SATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRR 563 (605)
Q Consensus 489 a~~~~~~g~~~~~~g---~~~~A~~~~~~al~-~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 563 (605)
.+..+++++.+.+.. +-++-+..+++.++ -.|+ .-+..+.++..|+++++|++++++++..++.+|+|.++.-..
T Consensus 32 ~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~Lk 111 (149)
T KOG3364|consen 32 KQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALELK 111 (149)
T ss_pred HHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHHH
Confidence 566788888887755 46778899999986 4443 467888999999999999999999999999999999876654
Q ss_pred HHHH
Q 007401 564 GTAR 567 (605)
Q Consensus 564 a~~~ 567 (605)
-.+.
T Consensus 112 ~~ie 115 (149)
T KOG3364|consen 112 ETIE 115 (149)
T ss_pred HHHH
Confidence 4443
No 301
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=95.07 E-value=0.54 Score=48.46 Aligned_cols=117 Identities=17% Similarity=0.113 Sum_probs=87.2
Q ss_pred hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CC------
Q 007401 486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNG----TSATYYSNRAAAYLELGCFQQAEEDCSKTISL-DK------ 554 (605)
Q Consensus 486 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p----~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-~p------ 554 (605)
...+..|...+....+.|+++.|...+.++....+ ..+.+.+..+..+...|+..+|+..++..++. ..
T Consensus 143 ~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~ 222 (352)
T PF02259_consen 143 EELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSI 222 (352)
T ss_pred hHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccc
Confidence 34567788888888888888888888888877542 24677778888888888888888888777761 00
Q ss_pred ---------------------------CCHHHHHHHHHHHHHc------cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 007401 555 ---------------------------KNVKAYLRRGTAREAL------FCYNEALQDFKHAMVLEPQNKAANLAEKRLR 601 (605)
Q Consensus 555 ---------------------------~~~~~~~~la~~~~~~------g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 601 (605)
...++++.+|...... ++.+++.+.|+++.+++|++..++...+..+
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~ 302 (352)
T PF02259_consen 223 SNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFN 302 (352)
T ss_pred cHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHH
Confidence 0134666777776666 7888888888889888888888777776655
Q ss_pred H
Q 007401 602 K 602 (605)
Q Consensus 602 ~ 602 (605)
.
T Consensus 303 ~ 303 (352)
T PF02259_consen 303 D 303 (352)
T ss_pred H
Confidence 4
No 302
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.06 E-value=0.16 Score=50.07 Aligned_cols=106 Identities=14% Similarity=0.022 Sum_probs=81.0
Q ss_pred hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC----CHHHHH
Q 007401 486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKK----NVKAYL 561 (605)
Q Consensus 486 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~----~~~~~~ 561 (605)
|-.....=.++..+...|-|++|.+.-++++++++.+.++....+.++...+++.++.++..+--..=.. ....|.
T Consensus 172 p~~sYv~GmyaFgL~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyW 251 (491)
T KOG2610|consen 172 PCYSYVHGMYAFGLEECGIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYW 251 (491)
T ss_pred cHHHHHHHHHHhhHHHhccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhH
Confidence 3334444456777788999999999999999999999999999999999999999999987664322111 123666
Q ss_pred HHHHHHHHccCHHHHHHHHHHHH--HhCCCCH
Q 007401 562 RRGTAREALFCYNEALQDFKHAM--VLEPQNK 591 (605)
Q Consensus 562 ~la~~~~~~g~~~~A~~~~~~al--~~~p~~~ 591 (605)
.-+.++.+-++|+.|++.|.+=+ +++.+|.
T Consensus 252 H~Al~~iE~aeye~aleIyD~ei~k~l~k~Da 283 (491)
T KOG2610|consen 252 HTALFHIEGAEYEKALEIYDREIWKRLEKDDA 283 (491)
T ss_pred HHHHhhhcccchhHHHHHHHHHHHHHhhccch
Confidence 78899999999999999998765 3344444
No 303
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=94.94 E-value=0.1 Score=57.17 Aligned_cols=113 Identities=31% Similarity=0.420 Sum_probs=96.8
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHc--CCHHHHHHHHHHHHhcCCCCHHHHH
Q 007401 488 ASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGT----SATYYSNRAAAYLEL--GCFQQAEEDCSKTISLDKKNVKAYL 561 (605)
Q Consensus 488 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~la~~~~~~--~~~~~A~~~~~~al~~~p~~~~~~~ 561 (605)
.+......|+.+++.++|..+..-|..++.+-|. .+....+++.|++++ ++|.+++..+.-++...|....+++
T Consensus 52 ra~~~~~E~n~~~~K~d~~~~~~~~~~~~~llp~~~~~~a~~~~~~~s~~m~~~l~~~~~~~~E~~la~~~~p~i~~~Ll 131 (748)
T KOG4151|consen 52 RALELKEEGNKLFQKRDYEGAMFRYDCAIKLLPKDHHVVATLRSNQASCYMQLGLGEYPKAIPECELALESQPRISKALL 131 (748)
T ss_pred HHHHHHhhhhHHhhhhhhhccchhhhhhheeccccchhhhhHHHHHHHHHhhcCccchhhhcCchhhhhhccchHHHHHh
Confidence 3455666799999999999999999999988774 366778899999875 5899999999999999999999999
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 007401 562 RRGTAREALFCYNEALQDFKHAMVLEPQNKAANLAEKRL 600 (605)
Q Consensus 562 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 600 (605)
.++.+|...++++-|++.+.-....+|.+..+.....++
T Consensus 132 ~r~~~y~al~k~d~a~rdl~i~~~~~p~~~~~~eif~el 170 (748)
T KOG4151|consen 132 KRARKYEALNKLDLAVRDLRIVEKMDPSNVSASEIFEEL 170 (748)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHH
Confidence 999999999999999999888889999996666644443
No 304
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=94.81 E-value=0.17 Score=49.08 Aligned_cols=78 Identities=26% Similarity=0.344 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 007401 489 SELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTA 566 (605)
Q Consensus 489 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~ 566 (605)
.....++=..+.+.++++.|..+-++.+.++|+++.-+..+|.+|.+++.+..|+++++..++..|+.+.+-..+...
T Consensus 181 ~rll~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ir~~l 258 (269)
T COG2912 181 SRLLRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMIRAQL 258 (269)
T ss_pred HHHHHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHHHHHH
Confidence 445555566677778888888888888888888888888888888888888888888888888888777665555443
No 305
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=94.81 E-value=1.2 Score=45.22 Aligned_cols=101 Identities=15% Similarity=0.059 Sum_probs=64.8
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 007401 492 LKEKGNAAFKGKQWNKAVNYYSEAIKL---NGTS-----ATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRR 563 (605)
Q Consensus 492 ~~~~g~~~~~~g~~~~A~~~~~~al~~---~p~~-----~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 563 (605)
+...=......|+++.|++..+..... .++. +-.+...+... ...+...|..+..++.++.|+...+-..-
T Consensus 191 ~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~-ldadp~~Ar~~A~~a~KL~pdlvPaav~A 269 (531)
T COG3898 191 ARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSL-LDADPASARDDALEANKLAPDLVPAAVVA 269 (531)
T ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHH-hcCChHHHHHHHHHHhhcCCccchHHHHH
Confidence 333334455666777777666655432 1221 11112222221 12246667777778888888888888888
Q ss_pred HHHHHHccCHHHHHHHHHHHHHhCCCCHHH
Q 007401 564 GTAREALFCYNEALQDFKHAMVLEPQNKAA 593 (605)
Q Consensus 564 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 593 (605)
+.++++.|+..++-..++.+.+.+|+-..+
T Consensus 270 Aralf~d~~~rKg~~ilE~aWK~ePHP~ia 299 (531)
T COG3898 270 ARALFRDGNLRKGSKILETAWKAEPHPDIA 299 (531)
T ss_pred HHHHHhccchhhhhhHHHHHHhcCCChHHH
Confidence 999999999999999999999999865443
No 306
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=94.70 E-value=1.9 Score=43.01 Aligned_cols=103 Identities=16% Similarity=0.115 Sum_probs=79.7
Q ss_pred hHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHh----CC---CC-------HHHHHHHHHHHHHcCCH---HHHHHHHH
Q 007401 486 IDASELLKEKGNAAFKGK-QWNKAVNYYSEAIKL----NG---TS-------ATYYSNRAAAYLELGCF---QQAEEDCS 547 (605)
Q Consensus 486 ~~~a~~~~~~g~~~~~~g-~~~~A~~~~~~al~~----~p---~~-------~~~~~~la~~~~~~~~~---~~A~~~~~ 547 (605)
...++.+++.|...++.+ +|++|..++++++++ .. .. ..++..++.+|++.+.+ .+|.+.++
T Consensus 32 ~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~ 111 (278)
T PF08631_consen 32 EELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEKALNALR 111 (278)
T ss_pred HHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHH
Confidence 456899999999999999 999999999999887 22 11 45677889999888775 45566666
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Q 007401 548 KTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEP 588 (605)
Q Consensus 548 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 588 (605)
.+..-.|+.+..++..-.++.+.++.+.+.+.+.+++..-+
T Consensus 112 ~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~ 152 (278)
T PF08631_consen 112 LLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVD 152 (278)
T ss_pred HHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcc
Confidence 66666788787775555566568899999999998887654
No 307
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=94.65 E-value=0.035 Score=54.94 Aligned_cols=74 Identities=26% Similarity=0.199 Sum_probs=69.2
Q ss_pred CCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 007401 482 TNGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKK 555 (605)
Q Consensus 482 ~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~ 555 (605)
+..++..+..|...+.++.+.++...|+..|..++.++|+.+.-|-.++.++..++++.+|..++..+.+++-+
T Consensus 141 i~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl~~a~kld~d 214 (377)
T KOG1308|consen 141 IELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDLALACKLDYD 214 (377)
T ss_pred cccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHHHHHHHhcccc
Confidence 44567889999999999999999999999999999999999999999999999999999999999999999864
No 308
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=94.60 E-value=0.22 Score=48.19 Aligned_cols=78 Identities=22% Similarity=0.242 Sum_probs=68.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 007401 524 TYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAANLAEKRLR 601 (605)
Q Consensus 524 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 601 (605)
....++=..+...++++.|..+.++.+.++|+++.-+.-+|.+|.++|.++-|++.++..++..|+++.+......+.
T Consensus 182 rll~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ir~~l~ 259 (269)
T COG2912 182 RLLRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMIRAQLL 259 (269)
T ss_pred HHHHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 344566667788899999999999999999999999999999999999999999999999999999988766665543
No 309
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=94.33 E-value=1.2 Score=44.62 Aligned_cols=107 Identities=25% Similarity=0.102 Sum_probs=83.5
Q ss_pred HHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcC-------CHHHHHHHHHHHHhcCCC
Q 007401 488 ASELLKEKGNAAFK----GKQWNKAVNYYSEAIKLNGTS-ATYYSNRAAAYLELG-------CFQQAEEDCSKTISLDKK 555 (605)
Q Consensus 488 ~a~~~~~~g~~~~~----~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~~-------~~~~A~~~~~~al~~~p~ 555 (605)
.....+.+|..+.. ..++.+|..+|+++.+..... ....+.++.+|..-. +..+|...|.++-...
T Consensus 108 ~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~-- 185 (292)
T COG0790 108 LAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG-- 185 (292)
T ss_pred cHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc--
Confidence 35677778888877 559999999999999875444 355888888887641 2347999999988776
Q ss_pred CHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 007401 556 NVKAYLRRGTAREA----LFCYNEALQDFKHAMVLEPQNKAANLAEK 598 (605)
Q Consensus 556 ~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 598 (605)
++.+.+++|.+|.. ..++++|..+|+++-+... ......++
T Consensus 186 ~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~ 230 (292)
T COG0790 186 NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG 230 (292)
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH
Confidence 78899999988855 4589999999999998765 55555555
No 310
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=93.99 E-value=1 Score=46.29 Aligned_cols=102 Identities=11% Similarity=0.026 Sum_probs=82.4
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHH---cCCHHHHHHHHHH-HHhcCCCCHHHH
Q 007401 489 SELLKEKGNAAFKGKQWNKAVNYYSEAIKL----NGTSATYYSNRAAAYLE---LGCFQQAEEDCSK-TISLDKKNVKAY 560 (605)
Q Consensus 489 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~la~~~~~---~~~~~~A~~~~~~-al~~~p~~~~~~ 560 (605)
.+...++=..|-..++|+.-++..+..-.+ .++...+.+.+|.++-. .|+.++|++.+.. ..+.++.+++.+
T Consensus 141 ~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~ 220 (374)
T PF13281_consen 141 PDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTL 220 (374)
T ss_pred hhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHH
Confidence 455566666788899999999998887666 45667888888888888 8899999999999 455667889999
Q ss_pred HHHHHHHHHc---------cCHHHHHHHHHHHHHhCCCC
Q 007401 561 LRRGTAREAL---------FCYNEALQDFKHAMVLEPQN 590 (605)
Q Consensus 561 ~~la~~~~~~---------g~~~~A~~~~~~al~~~p~~ 590 (605)
..+|.+|... ...++|+.+|.++++++|+.
T Consensus 221 gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~ 259 (374)
T PF13281_consen 221 GLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDY 259 (374)
T ss_pred HHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccc
Confidence 9999998543 34789999999999999654
No 311
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.90 E-value=0.51 Score=44.72 Aligned_cols=102 Identities=18% Similarity=0.194 Sum_probs=72.4
Q ss_pred hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHH----hcCC-
Q 007401 486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTS------ATYYSNRAAAYLELGCFQQAEEDCSKTI----SLDK- 554 (605)
Q Consensus 486 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~al----~~~p- 554 (605)
++.+..-...+--..+.-+.++|+..|++++.+-.++ .+.+...+..+..++.|.+|...+.+-. +.+.
T Consensus 107 pdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y 186 (308)
T KOG1585|consen 107 PDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAY 186 (308)
T ss_pred cchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhc
Confidence 4445455556666777888999999999998764332 4566667788888899999887776633 3332
Q ss_pred -CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Q 007401 555 -KNVKAYLRRGTAREALFCYNEALQDFKHAMVLE 587 (605)
Q Consensus 555 -~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 587 (605)
..-+.+...-.+|+...+|.+|..+|+...++.
T Consensus 187 ~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip 220 (308)
T KOG1585|consen 187 NSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIP 220 (308)
T ss_pred ccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCc
Confidence 233456666677788889999999999877653
No 312
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=93.67 E-value=1.2 Score=46.10 Aligned_cols=96 Identities=15% Similarity=0.047 Sum_probs=75.1
Q ss_pred hHHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhCCCC------------------------------------------
Q 007401 486 IDASELLKEKGNAAFKGKQ-WNKAVNYYSEAIKLNGTS------------------------------------------ 522 (605)
Q Consensus 486 ~~~a~~~~~~g~~~~~~g~-~~~A~~~~~~al~~~p~~------------------------------------------ 522 (605)
...+..+..-|..+.+.|+ -++|++.++.+++..+.+
T Consensus 376 qQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i 455 (549)
T PF07079_consen 376 QQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQFTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPI 455 (549)
T ss_pred HHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcc
Confidence 4557777888888888887 667888877777654443
Q ss_pred ----HHHHHHH--HHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHH
Q 007401 523 ----ATYYSNR--AAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKH 582 (605)
Q Consensus 523 ----~~~~~~l--a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 582 (605)
.+.-+.+ |+.++..|+|.++.-+..-..+++| ++.++..+|.|+....+|++|-.++..
T Consensus 456 ~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~ 520 (549)
T PF07079_consen 456 TISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQK 520 (549)
T ss_pred cccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence 2223333 3335678999999999999999999 899999999999999999999998875
No 313
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=93.48 E-value=0.17 Score=49.34 Aligned_cols=80 Identities=10% Similarity=0.217 Sum_probs=66.7
Q ss_pred CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHH-HHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHH
Q 007401 483 NGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSN-RAAAYLELGCFQQAEEDCSKTISLDKKNVKAYL 561 (605)
Q Consensus 483 ~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~-la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 561 (605)
...+++...|...+....+.+.|.+--..|.++++.+|.|.+.|.. -+.-+...++++.+...+.++++++|++|..|+
T Consensus 101 nkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~ 180 (435)
T COG5191 101 NKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWI 180 (435)
T ss_pred hcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHH
Confidence 4456777888888888888889999999999999999999999876 455566778899999999999999999988776
Q ss_pred H
Q 007401 562 R 562 (605)
Q Consensus 562 ~ 562 (605)
.
T Consensus 181 e 181 (435)
T COG5191 181 E 181 (435)
T ss_pred H
Confidence 5
No 314
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=93.42 E-value=0.95 Score=49.88 Aligned_cols=101 Identities=20% Similarity=0.139 Sum_probs=60.6
Q ss_pred HHHHHHHHC----C-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 007401 494 EKGNAAFKG----K-QWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELG---CFQQAEEDCSKTISLDKKNVKAYLRRGT 565 (605)
Q Consensus 494 ~~g~~~~~~----g-~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~---~~~~A~~~~~~al~~~p~~~~~~~~la~ 565 (605)
.+|.+|.+. . +++.|+.+|.++.++ .++.+.+.+|.+|..-. ++.+|.++|..|.+. .+..+.++++.
T Consensus 293 ~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~--g~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~--G~~~A~~~la~ 368 (552)
T KOG1550|consen 293 GLGRLYLQGLGVEKIDYEKALKLYTKAAEL--GNPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA--GHILAIYRLAL 368 (552)
T ss_pred HHHHHHhcCCCCccccHHHHHHHHHHHHhc--CCchHHHHHHHHHHcCCccccHHHHHHHHHHHHHc--CChHHHHHHHH
Confidence 345555552 2 566677777776655 34566667777776544 456777777776655 35667777777
Q ss_pred HHHH----ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 007401 566 AREA----LFCYNEALQDFKHAMVLEPQNKAANLAEKRL 600 (605)
Q Consensus 566 ~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 600 (605)
||.. .-+.+.|..++.++-+.+ ++.+...+..+
T Consensus 369 ~y~~G~gv~r~~~~A~~~~k~aA~~g--~~~A~~~~~~~ 405 (552)
T KOG1550|consen 369 CYELGLGVERNLELAFAYYKKAAEKG--NPSAAYLLGAF 405 (552)
T ss_pred HHHhCCCcCCCHHHHHHHHHHHHHcc--ChhhHHHHHHH
Confidence 6632 235677777777776655 44444444443
No 315
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=93.35 E-value=1.3 Score=39.63 Aligned_cols=82 Identities=16% Similarity=-0.034 Sum_probs=71.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 007401 524 TYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAANLAEKRLRKL 603 (605)
Q Consensus 524 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~ 603 (605)
..+.....+-...++.+++...+...--+.|+.+..-..-|..+...|++.+|+..|+....-.|..+.....+..|+..
T Consensus 11 ~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~ 90 (160)
T PF09613_consen 11 GGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYA 90 (160)
T ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHH
Confidence 44556666677788999999999988899999999999999999999999999999999999899999888888888766
Q ss_pred hC
Q 007401 604 IG 605 (605)
Q Consensus 604 ~g 605 (605)
+|
T Consensus 91 ~~ 92 (160)
T PF09613_consen 91 LG 92 (160)
T ss_pred cC
Confidence 53
No 316
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=93.24 E-value=0.92 Score=46.38 Aligned_cols=100 Identities=18% Similarity=0.121 Sum_probs=83.8
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccC----HHHHH
Q 007401 504 QWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGC--FQQAEEDCSKTISLDKKNVKAYLRRGTAREALFC----YNEAL 577 (605)
Q Consensus 504 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~--~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~----~~~A~ 577 (605)
..++-+.+.+.+++.+|+...+|+.+.+++.+... +..=++.++++++.||.|..+|.++=.++.+... ..+=+
T Consensus 90 ~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~~El 169 (421)
T KOG0529|consen 90 LLDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEKEEL 169 (421)
T ss_pred hhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccchhHH
Confidence 67788889999999999999999999999987764 7888999999999999999999887777655443 46667
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHh
Q 007401 578 QDFKHAMVLEPQNKAANLAEKRLRKL 603 (605)
Q Consensus 578 ~~~~~al~~~p~~~~~~~~~~~~~~~ 603 (605)
++..+++.-++.|..++.+...++..
T Consensus 170 ~ftt~~I~~nfSNYsaWhyRs~lL~~ 195 (421)
T KOG0529|consen 170 EFTTKLINDNFSNYSAWHYRSLLLST 195 (421)
T ss_pred HHHHHHHhccchhhhHHHHHHHHHHH
Confidence 78888888899999998888777653
No 317
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=93.23 E-value=0.21 Score=33.16 Aligned_cols=29 Identities=21% Similarity=0.314 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Q 007401 490 ELLKEKGNAAFKGKQWNKAVNYYSEAIKL 518 (605)
Q Consensus 490 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~ 518 (605)
..+.++|..|...|+|++|+.++++++.+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 44566666666666666666666666654
No 318
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=93.18 E-value=2.2 Score=43.54 Aligned_cols=103 Identities=8% Similarity=-0.039 Sum_probs=79.7
Q ss_pred CChHHHHHHHHHHHHHHHCCC------------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 007401 484 GSIDASELLKEKGNAAFKGKQ------------WNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTIS 551 (605)
Q Consensus 484 ~~~~~a~~~~~~g~~~~~~g~------------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 551 (605)
.+|.+.+.|..+....-..-. .+.-+..|++|++.+|++..++..+-.+..+..+-++..+-+++++.
T Consensus 14 ~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~ 93 (321)
T PF08424_consen 14 ENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWEELLF 93 (321)
T ss_pred hCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 356667777776655443322 56778899999999999999999999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHHH---ccCHHHHHHHHHHHHHh
Q 007401 552 LDKKNVKAYLRRGTAREA---LFCYNEALQDFKHAMVL 586 (605)
Q Consensus 552 ~~p~~~~~~~~la~~~~~---~g~~~~A~~~~~~al~~ 586 (605)
.+|++...|..+-..... .-.+.+....|.++++.
T Consensus 94 ~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~ 131 (321)
T PF08424_consen 94 KNPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRA 131 (321)
T ss_pred HCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHH
Confidence 999999888765543322 33577888888877765
No 319
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=92.91 E-value=1.2 Score=49.28 Aligned_cols=102 Identities=15% Similarity=0.040 Sum_probs=78.4
Q ss_pred CChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH----------hCC----------CCHHHHHHHHHHHHHcCCHHHHH
Q 007401 484 GSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIK----------LNG----------TSATYYSNRAAAYLELGCFQQAE 543 (605)
Q Consensus 484 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~----------~~p----------~~~~~~~~la~~~~~~~~~~~A~ 543 (605)
+....-..|++.+..+...++.+.|+++|+|+-. -+| .+...|.--|+.+-..|+.+.|+
T Consensus 853 DRiHLr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl 932 (1416)
T KOG3617|consen 853 DRIHLRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAAL 932 (1416)
T ss_pred cceehhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHH
Confidence 3444556789999999999999999999998631 122 34556666788888889999999
Q ss_pred HHHHHHHhc---------------------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 007401 544 EDCSKTISL---------------------DKKNVKAYLRRGTAREALFCYNEALQDFKHAMV 585 (605)
Q Consensus 544 ~~~~~al~~---------------------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 585 (605)
.+|..|-.. ...+-.+.|.+|+-|...|++.+|+..|.+|-.
T Consensus 933 ~~Y~~A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqa 995 (1416)
T KOG3617|consen 933 SFYSSAKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFTRAQA 995 (1416)
T ss_pred HHHHHhhhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 988776432 245667899999999999999999988877643
No 320
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=92.89 E-value=2 Score=43.79 Aligned_cols=92 Identities=7% Similarity=-0.015 Sum_probs=77.0
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCC------------HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHH
Q 007401 509 VNYYSEAIKLNGTSATYYSNRAAAYLELGC------------FQQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEA 576 (605)
Q Consensus 509 ~~~~~~al~~~p~~~~~~~~la~~~~~~~~------------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 576 (605)
...|++.++-+|++...|..+....-..-. .+.-+..|++|++.+|++...+..+-.+..+.-+-++.
T Consensus 5 ~~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l 84 (321)
T PF08424_consen 5 TAELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKL 84 (321)
T ss_pred HHHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHH
Confidence 345888899999999999998876544432 45678899999999999999999988899999999999
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHH
Q 007401 577 LQDFKHAMVLEPQNKAANLAEKRL 600 (605)
Q Consensus 577 ~~~~~~al~~~p~~~~~~~~~~~~ 600 (605)
.+.+++++..+|++...|..+-..
T Consensus 85 ~~~we~~l~~~~~~~~LW~~yL~~ 108 (321)
T PF08424_consen 85 AKKWEELLFKNPGSPELWREYLDF 108 (321)
T ss_pred HHHHHHHHHHCCCChHHHHHHHHH
Confidence 999999999999988777665543
No 321
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=92.82 E-value=0.42 Score=50.66 Aligned_cols=75 Identities=17% Similarity=0.113 Sum_probs=67.1
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 007401 491 LLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGT 565 (605)
Q Consensus 491 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~ 565 (605)
-+.++++.+.+.+...+|-..+.+++.+....+-.++.+|..|+.+.+.++|++.+++|++++|+++..-..+-.
T Consensus 644 ~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~~~~~~~~~~l~~ 718 (886)
T KOG4507|consen 644 PLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALEAFRQALKLTTKCPECENSLKL 718 (886)
T ss_pred cHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHHHHHHHHhcCCCChhhHHHHHH
Confidence 356789999999989999999999999998889999999999999999999999999999999999876555443
No 322
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=92.82 E-value=0.23 Score=32.97 Aligned_cols=29 Identities=24% Similarity=0.331 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 007401 524 TYYSNRAAAYLELGCFQQAEEDCSKTISL 552 (605)
Q Consensus 524 ~~~~~la~~~~~~~~~~~A~~~~~~al~~ 552 (605)
.++.++|.+|...|++++|+.++++++++
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 34455555555555555555555555543
No 323
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=92.58 E-value=0.57 Score=38.06 Aligned_cols=54 Identities=17% Similarity=0.210 Sum_probs=32.1
Q ss_pred HHHCCCHHHHHHHHHHHHHhCCC---------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 007401 499 AFKGKQWNKAVNYYSEAIKLNGT---------SATYYSNRAAAYLELGCFQQAEEDCSKTISL 552 (605)
Q Consensus 499 ~~~~g~~~~A~~~~~~al~~~p~---------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 552 (605)
..+.++|.+|++.+.+....... ...++.++|.++...|++++|++.+++++++
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~ 70 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRL 70 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 45667777777776666654221 1234555666666666666666666666654
No 324
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=92.31 E-value=2 Score=47.39 Aligned_cols=95 Identities=21% Similarity=0.056 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHHHCC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHhcCCCCHHHHH
Q 007401 489 SELLKEKGNAAFKGK---QWNKAVNYYSEAIKLNGTSATYYSNRAAAYLEL----GCFQQAEEDCSKTISLDKKNVKAYL 561 (605)
Q Consensus 489 a~~~~~~g~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~----~~~~~A~~~~~~al~~~p~~~~~~~ 561 (605)
.+..+.+|.+++... ++.+|.++|..|.+. .+..+.+.++.||..- .+...|..++.++-+.+ ++.+.+
T Consensus 325 ~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~--G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g--~~~A~~ 400 (552)
T KOG1550|consen 325 PDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA--GHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG--NPSAAY 400 (552)
T ss_pred chHHHHHHHHHHcCCccccHHHHHHHHHHHHHc--CChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc--ChhhHH
Confidence 455666777776544 577888888888664 4567888888888643 35788888888888876 566666
Q ss_pred HHHHHHHHc-cCHHHHHHHHHHHHHhC
Q 007401 562 RRGTAREAL-FCYNEALQDFKHAMVLE 587 (605)
Q Consensus 562 ~la~~~~~~-g~~~~A~~~~~~al~~~ 587 (605)
.++..+..- ++++.+...+.....+.
T Consensus 401 ~~~~~~~~g~~~~~~~~~~~~~~a~~g 427 (552)
T KOG1550|consen 401 LLGAFYEYGVGRYDTALALYLYLAELG 427 (552)
T ss_pred HHHHHHHHccccccHHHHHHHHHHHhh
Confidence 666665443 67777666655555443
No 325
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=92.24 E-value=0.84 Score=47.73 Aligned_cols=75 Identities=9% Similarity=0.090 Sum_probs=66.5
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhcCCCCHHHHHH
Q 007401 488 ASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGC-FQQAEEDCSKTISLDKKNVKAYLR 562 (605)
Q Consensus 488 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~-~~~A~~~~~~al~~~p~~~~~~~~ 562 (605)
+...|.+.....-+.+.|.+--..|.+++..+|+++++|..-|...+..+. .+.|...+.++++.+|+++..|..
T Consensus 104 D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~npdsp~Lw~e 179 (568)
T KOG2396|consen 104 DVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLRFNPDSPKLWKE 179 (568)
T ss_pred CHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcCCCChHHHHH
Confidence 467788877777777779999999999999999999999999999988876 899999999999999999987754
No 326
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=92.21 E-value=1.5 Score=42.09 Aligned_cols=122 Identities=12% Similarity=0.051 Sum_probs=101.9
Q ss_pred CCCChHHHHHHHHHHHHHHHCCCHH-HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHH
Q 007401 482 TNGSIDASELLKEKGNAAFKGKQWN-KAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAY 560 (605)
Q Consensus 482 ~~~~~~~a~~~~~~g~~~~~~g~~~-~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 560 (605)
..+++..-+.|.-.-.+....|++. +-++..++++..+..|-.+|..+-++....+.|+.-+++..+.++.|-.|-.+|
T Consensus 105 ~e~npKNYQvWHHRr~ive~l~d~s~rELef~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~NNSAW 184 (318)
T KOG0530|consen 105 IEDNPKNYQVWHHRRVIVELLGDPSFRELEFTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDELAYADELLEEDIRNNSAW 184 (318)
T ss_pred HHhCccchhHHHHHHHHHHHhcCcccchHHHHHHHHhccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccchh
Confidence 4456677788888888888888888 889999999999999999999999999999999999999999999998888888
Q ss_pred HHHHHHHHHccC------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 007401 561 LRRGTAREALFC------YNEALQDFKHAMVLEPQNKAANLAEKRLRKL 603 (605)
Q Consensus 561 ~~la~~~~~~g~------~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~ 603 (605)
..+-.+...... .+.-+.+..+.+.+.|+|..++.++..++..
T Consensus 185 N~Ryfvi~~~~~~~~~~~le~El~yt~~~I~~vP~NeSaWnYL~G~l~~ 233 (318)
T KOG0530|consen 185 NQRYFVITNTKGVISKAELERELNYTKDKILLVPNNESAWNYLKGLLEL 233 (318)
T ss_pred heeeEEEEeccCCccHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHh
Confidence 887666554322 3445677888899999999999999988764
No 327
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=92.17 E-value=1.9 Score=44.31 Aligned_cols=102 Identities=16% Similarity=0.137 Sum_probs=80.0
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CC-C--------------------------------CHHHHHHHHHHH
Q 007401 488 ASELLKEKGNAAFKGKQWNKAVNYYSEAIKL-NG-T--------------------------------SATYYSNRAAAY 533 (605)
Q Consensus 488 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~-~p-~--------------------------------~~~~~~~la~~~ 533 (605)
.....++.+..+...|+-.+|+..+++.++. .. . .+.++..+|...
T Consensus 183 ~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~ 262 (352)
T PF02259_consen 183 LPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWL 262 (352)
T ss_pred CcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHH
Confidence 4567788899999999999999999988871 11 0 134566666666
Q ss_pred HHc------CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccC-----------------HHHHHHHHHHHHHhCCC
Q 007401 534 LEL------GCFQQAEEDCSKTISLDKKNVKAYLRRGTAREALFC-----------------YNEALQDFKHAMVLEPQ 589 (605)
Q Consensus 534 ~~~------~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~-----------------~~~A~~~~~~al~~~p~ 589 (605)
... ++++++++.|+++++++|++.++|+..|..+...=+ ...|+.+|-+++.+.++
T Consensus 263 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~~~~ 341 (352)
T PF02259_consen 263 DELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFNDKLLESDPREKEESSQEDRSEYLEQAIEGYLKALSLGSK 341 (352)
T ss_pred HhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHhhCCC
Confidence 666 778999999999999999999999999988755422 14488899999998877
No 328
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=92.06 E-value=3 Score=45.08 Aligned_cols=110 Identities=13% Similarity=0.069 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC----------
Q 007401 490 ELLKEKGNAAFKGKQWNKAVNYYSEAIKLNG----TSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKK---------- 555 (605)
Q Consensus 490 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p----~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~---------- 555 (605)
..|...|..|...|+.++|-..|+++.+..- +-+.+|.+-|..-+...+++.|++..++|...-.+
T Consensus 388 ~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~ 467 (835)
T KOG2047|consen 388 TLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSE 467 (835)
T ss_pred hHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCC
Confidence 4455555555555555555555555554321 11444555554444555555555555554433211
Q ss_pred --------CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 007401 556 --------NVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAANLAEKR 599 (605)
Q Consensus 556 --------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~ 599 (605)
+...|..++......|-++.....|++.+++.--.++...+.+.
T Consensus 468 pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAm 519 (835)
T KOG2047|consen 468 PVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAM 519 (835)
T ss_pred cHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 12344444544555555555555555555554444444433333
No 329
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=91.81 E-value=0.26 Score=32.40 Aligned_cols=28 Identities=32% Similarity=0.364 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 007401 525 YYSNRAAAYLELGCFQQAEEDCSKTISL 552 (605)
Q Consensus 525 ~~~~la~~~~~~~~~~~A~~~~~~al~~ 552 (605)
+|..+|.+.+..++|++|+++|++++++
T Consensus 3 v~~~Lgeisle~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 3 VYDLLGEISLENENFEQAIEDYEKALEI 30 (38)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 4445555555555555555555555543
No 330
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=91.77 E-value=1.3 Score=51.11 Aligned_cols=102 Identities=18% Similarity=0.100 Sum_probs=75.1
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcC-------CHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 007401 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTS---ATYYSNRAAAYLELG-------CFQQAEEDCSKTISLDKKNVKAYLRRG 564 (605)
Q Consensus 495 ~g~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~-------~~~~A~~~~~~al~~~p~~~~~~~~la 564 (605)
.-+.+...+.|++|+..|++.-...|.- -++.+..|...+.+- .+.+|+.-|++. .-.|.-|--|.-.|
T Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 559 (932)
T PRK13184 481 VPDAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYL-HGGVGAPLEYLGKA 559 (932)
T ss_pred CcHHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHh-cCCCCCchHHHhHH
Confidence 3456677888999999999988877654 466677777776542 366666666653 33455677788888
Q ss_pred HHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 007401 565 TAREALFCYNEALQDFKHAMVLEPQNKAANLAE 597 (605)
Q Consensus 565 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 597 (605)
.+|.++|+|++-+++|..+++..|+.+..-...
T Consensus 560 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 592 (932)
T PRK13184 560 LVYQRLGEYNEEIKSLLLALKRYSQHPEISRLR 592 (932)
T ss_pred HHHHHhhhHHHHHHHHHHHHHhcCCCCccHHHH
Confidence 899999999999999999999988887654433
No 331
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=91.59 E-value=2.3 Score=43.96 Aligned_cols=77 Identities=18% Similarity=0.165 Sum_probs=47.6
Q ss_pred HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--------------------------CCC---HHHHHHHHHH
Q 007401 516 IKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLD--------------------------KKN---VKAYLRRGTA 566 (605)
Q Consensus 516 l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--------------------------p~~---~~~~~~la~~ 566 (605)
++.+|-+.+.+..++.++.+.|+++.|.+.+++|+-.- ++| ..+.++....
T Consensus 33 l~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~ 112 (360)
T PF04910_consen 33 LQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQS 112 (360)
T ss_pred HHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHH
Confidence 34566667777777777777777766666666654220 111 1255556666
Q ss_pred HHHccCHHHHHHHHHHHHHhCCC-CHH
Q 007401 567 REALFCYNEALQDFKHAMVLEPQ-NKA 592 (605)
Q Consensus 567 ~~~~g~~~~A~~~~~~al~~~p~-~~~ 592 (605)
+.+.|.+.-|+++++-.+.++|. |+.
T Consensus 113 L~~RG~~rTAlE~~KlLlsLdp~~DP~ 139 (360)
T PF04910_consen 113 LGRRGCWRTALEWCKLLLSLDPDEDPL 139 (360)
T ss_pred HHhcCcHHHHHHHHHHHHhcCCCCCcc
Confidence 66777777777777777777776 543
No 332
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=91.20 E-value=1 Score=36.58 Aligned_cols=56 Identities=23% Similarity=0.271 Sum_probs=45.7
Q ss_pred HHHcCCHHHHHHHHHHHHhcCC----CC-----HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Q 007401 533 YLELGCFQQAEEDCSKTISLDK----KN-----VKAYLRRGTAREALFCYNEALQDFKHAMVLEP 588 (605)
Q Consensus 533 ~~~~~~~~~A~~~~~~al~~~p----~~-----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 588 (605)
....++|.+|++.+.+.+.... .. ..+..++|.++...|++++|++.+++++++..
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Ar 72 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLAR 72 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 4578999999888888776532 12 45788899999999999999999999998854
No 333
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=91.18 E-value=0.34 Score=47.39 Aligned_cols=87 Identities=8% Similarity=0.028 Sum_probs=60.9
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHH-HHHHHHHccCHHHHHHHHHHHHHhCCCCH
Q 007401 513 SEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLR-RGTAREALFCYNEALQDFKHAMVLEPQNK 591 (605)
Q Consensus 513 ~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~-la~~~~~~g~~~~A~~~~~~al~~~p~~~ 591 (605)
.++-...++++..|...+....+.+-|.+--..|.++++.+|.|.+.|.. .+.-++..++++.+...|+++++++|+++
T Consensus 97 ~R~tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p 176 (435)
T COG5191 97 YRSTNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSP 176 (435)
T ss_pred ehhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCc
Confidence 33444566777777777766666777777777777777777777777766 55566777777777777777777777777
Q ss_pred HHHHHHHH
Q 007401 592 AANLAEKR 599 (605)
Q Consensus 592 ~~~~~~~~ 599 (605)
..|...-+
T Consensus 177 ~iw~eyfr 184 (435)
T COG5191 177 RIWIEYFR 184 (435)
T ss_pred hHHHHHHH
Confidence 66655444
No 334
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=90.95 E-value=2.5 Score=40.20 Aligned_cols=79 Identities=18% Similarity=0.104 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHHHHHCCC-------HHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 007401 487 DASELLKEKGNAAFKGKQ-------WNKAVNYYSEAIKLNG------TSATYYSNRAAAYLELGCFQQAEEDCSKTISLD 553 (605)
Q Consensus 487 ~~a~~~~~~g~~~~~~g~-------~~~A~~~~~~al~~~p------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 553 (605)
..+..+..+|+.|-..++ +.+|++.|++++.... +...+.+.+|.+++.+|++++|.+.|.+.+...
T Consensus 116 ~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 116 KKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred HHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence 567888889999988888 4556666666655432 236788999999999999999999999999765
Q ss_pred CCCH-HHHHHHHH
Q 007401 554 KKNV-KAYLRRGT 565 (605)
Q Consensus 554 p~~~-~~~~~la~ 565 (605)
..+. ..+..+|.
T Consensus 196 ~~s~~~~l~~~AR 208 (214)
T PF09986_consen 196 KASKEPKLKDMAR 208 (214)
T ss_pred CCCCcHHHHHHHH
Confidence 4332 34444444
No 335
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=90.69 E-value=0.9 Score=29.46 Aligned_cols=31 Identities=13% Similarity=0.283 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHCCCHHHHHHH--HHHHHHhCCC
Q 007401 491 LLKEKGNAAFKGKQWNKAVNY--YSEAIKLNGT 521 (605)
Q Consensus 491 ~~~~~g~~~~~~g~~~~A~~~--~~~al~~~p~ 521 (605)
.|+.+|-.+..+|+|++|++. |.-+..+++.
T Consensus 3 ~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~ 35 (36)
T PF07720_consen 3 YLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKY 35 (36)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccc
Confidence 445555555666666666666 3355544443
No 336
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=90.64 E-value=3.9 Score=40.29 Aligned_cols=62 Identities=21% Similarity=0.159 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 007401 524 TYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMV 585 (605)
Q Consensus 524 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 585 (605)
.++..++..+...++++.+++.+++.+.++|.+-.+|..+-..|...|+...|+..|++.-+
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 34444445555555555555555555555555555555555555555555555555544443
No 337
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=90.46 E-value=0.48 Score=31.15 Aligned_cols=30 Identities=17% Similarity=0.313 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Q 007401 558 KAYLRRGTAREALFCYNEALQDFKHAMVLE 587 (605)
Q Consensus 558 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 587 (605)
+.|..+|.+....++|++|++.|++++++.
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~ 31 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEIQ 31 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 468899999999999999999999999874
No 338
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=90.42 E-value=0.99 Score=29.27 Aligned_cols=31 Identities=13% Similarity=-0.006 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHccCHHHHHHH--HHHHHHhCCC
Q 007401 559 AYLRRGTAREALFCYNEALQD--FKHAMVLEPQ 589 (605)
Q Consensus 559 ~~~~la~~~~~~g~~~~A~~~--~~~al~~~p~ 589 (605)
.++.+|..+..+|++++|+.. |+-+..+++.
T Consensus 3 ~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~ 35 (36)
T PF07720_consen 3 YLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKY 35 (36)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccc
Confidence 344455555555555555555 2244444443
No 339
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=90.30 E-value=2.9 Score=43.40 Aligned_cols=61 Identities=18% Similarity=0.139 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 007401 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSK 548 (605)
Q Consensus 487 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~ 548 (605)
++......-|..++.+|+|.++.-+-.-..+..| ++.+|..+|.|.+...+|.+|..++..
T Consensus 460 ~eian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~ 520 (549)
T PF07079_consen 460 EEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQK 520 (549)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence 3455556668889999999999999999999999 899999999999999999999998854
No 340
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=90.20 E-value=1.6 Score=42.91 Aligned_cols=65 Identities=15% Similarity=0.088 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 007401 488 ASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISL 552 (605)
Q Consensus 488 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 552 (605)
....+..++..+...++++.+++.+++.+..+|.+-..|..+-..|++.|+...|+..|++..++
T Consensus 152 ~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~ 216 (280)
T COG3629 152 FIKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT 216 (280)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 35678888999999999999999999999999999999999999999999999999999998775
No 341
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=90.09 E-value=1.7 Score=39.98 Aligned_cols=69 Identities=14% Similarity=0.058 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH
Q 007401 488 ASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNV 557 (605)
Q Consensus 488 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~ 557 (605)
..-.-..++.+.+.+|++++|+..++..-.- .-.+...-.+|+++..+|+-++|...|.++++.+++.+
T Consensus 125 k~l~~lRLArvq~q~~k~D~AL~~L~t~~~~-~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~~ 193 (207)
T COG2976 125 KALAALRLARVQLQQKKADAALKTLDTIKEE-SWAAIVAELRGDILLAKGDKQEARAAYEKALESDASPA 193 (207)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHhccccc-cHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCChH
Confidence 3445567899999999999999987764331 11234456799999999999999999999999986543
No 342
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=89.77 E-value=4.4 Score=43.89 Aligned_cols=100 Identities=18% Similarity=0.103 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC--CCHH---HHHHH
Q 007401 489 SELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDK--KNVK---AYLRR 563 (605)
Q Consensus 489 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p--~~~~---~~~~l 563 (605)
...|..+++.....|-++.....|++.+.+.--.+..-.|.|..+.....|+++.+.|++.+.+.+ +-.+ .|+..
T Consensus 477 lkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtk 556 (835)
T KOG2047|consen 477 LKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTK 556 (835)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHH
Confidence 345556666666666666667777777776666666666777666666666777777777666653 2222 23333
Q ss_pred HHHHHHccCHHHHHHHHHHHHHhCC
Q 007401 564 GTAREALFCYNEALQDFKHAMVLEP 588 (605)
Q Consensus 564 a~~~~~~g~~~~A~~~~~~al~~~p 588 (605)
....+.-.+.+.|...|++|++..|
T Consensus 557 fi~rygg~klEraRdLFEqaL~~Cp 581 (835)
T KOG2047|consen 557 FIKRYGGTKLERARDLFEQALDGCP 581 (835)
T ss_pred HHHHhcCCCHHHHHHHHHHHHhcCC
Confidence 3333444456667777777776665
No 343
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=89.30 E-value=8 Score=38.49 Aligned_cols=96 Identities=17% Similarity=0.081 Sum_probs=70.3
Q ss_pred HHHCCCHHHHHHHHHHHHHhC----CCC----HHHHHHHHHHHHHcC-CHHHHHHHHHHHHhc----CC---CC------
Q 007401 499 AFKGKQWNKAVNYYSEAIKLN----GTS----ATYYSNRAAAYLELG-CFQQAEEDCSKTISL----DK---KN------ 556 (605)
Q Consensus 499 ~~~~g~~~~A~~~~~~al~~~----p~~----~~~~~~la~~~~~~~-~~~~A~~~~~~al~~----~p---~~------ 556 (605)
..++|+++.|..+|.|+-... |+. +..+++.|...+..+ ++++|...+++++++ .. ..
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el 82 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL 82 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence 467899999999999986544 332 567888899999999 999999999999887 21 11
Q ss_pred -HHHHHHHHHHHHHccCHHH---HHHHHHHHHHhCCCCHHHH
Q 007401 557 -VKAYLRRGTAREALFCYNE---ALQDFKHAMVLEPQNKAAN 594 (605)
Q Consensus 557 -~~~~~~la~~~~~~g~~~~---A~~~~~~al~~~p~~~~~~ 594 (605)
...+..++.+|...+.++. |...++.+-...|+.+...
T Consensus 83 r~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~ 124 (278)
T PF08631_consen 83 RLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVF 124 (278)
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHH
Confidence 3367778999998887654 4444444545557666555
No 344
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=89.15 E-value=3.5 Score=42.14 Aligned_cols=95 Identities=21% Similarity=0.150 Sum_probs=76.5
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC----C----CCH
Q 007401 489 SELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGT---SATYYSNRAAAYLELGCFQQAEEDCSKTISLD----K----KNV 557 (605)
Q Consensus 489 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~----p----~~~ 557 (605)
-.++..+|..|..-|+++.|++.|.++-....+ ....+.+.-.+-..+++|.....+..+|.+.- . -.+
T Consensus 150 Rra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~ 229 (466)
T KOG0686|consen 150 RRALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPA 229 (466)
T ss_pred HHHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCc
Confidence 467889999999999999999999996554433 35677788888888999999888888887762 1 124
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHH
Q 007401 558 KAYLRRGTAREALFCYNEALQDFKHA 583 (605)
Q Consensus 558 ~~~~~la~~~~~~g~~~~A~~~~~~a 583 (605)
+..+..|.+.+.+++|+.|.++|-.+
T Consensus 230 kl~C~agLa~L~lkkyk~aa~~fL~~ 255 (466)
T KOG0686|consen 230 KLKCAAGLANLLLKKYKSAAKYFLLA 255 (466)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 57888899999999999999988655
No 345
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=88.68 E-value=1.5 Score=43.39 Aligned_cols=62 Identities=19% Similarity=0.072 Sum_probs=53.7
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 007401 508 AVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREA 569 (605)
Q Consensus 508 A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 569 (605)
|..+|.+|+.+.|++...|+.+|.++...++.-+|+-+|-+++....-++.+..++...+.+
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 68899999999999999999999999999999999999999997765578899999988877
No 346
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=88.67 E-value=6.4 Score=40.14 Aligned_cols=96 Identities=13% Similarity=0.002 Sum_probs=67.1
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 007401 489 SELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSA-TYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAR 567 (605)
Q Consensus 489 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 567 (605)
.-.+...+...+-.|+|++|-+.|+..+. +|+.- --+..+-.-...+|+++.|..+..++..+-|.-+-++...-...
T Consensus 120 pLIhlLeAQaal~eG~~~~Ar~kfeAMl~-dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r 198 (531)
T COG3898 120 PLIHLLEAQAALLEGDYEDARKKFEAMLD-DPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEAR 198 (531)
T ss_pred HHHHHHHHHHHHhcCchHHHHHHHHHHhc-ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHH
Confidence 34455557777788899988888887765 44421 11122222224578888888888888888888887877777778
Q ss_pred HHccCHHHHHHHHHHHHH
Q 007401 568 EALFCYNEALQDFKHAMV 585 (605)
Q Consensus 568 ~~~g~~~~A~~~~~~al~ 585 (605)
...|+++.|++..+...+
T Consensus 199 ~~~gdWd~AlkLvd~~~~ 216 (531)
T COG3898 199 CAAGDWDGALKLVDAQRA 216 (531)
T ss_pred HhcCChHHHHHHHHHHHH
Confidence 888888888887776544
No 347
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=88.61 E-value=4.5 Score=31.30 Aligned_cols=60 Identities=13% Similarity=0.159 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHH---HHHHHHHHcCCHHHHHHHHHH
Q 007401 489 SELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYS---NRAAAYLELGCFQQAEEDCSK 548 (605)
Q Consensus 489 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~---~la~~~~~~~~~~~A~~~~~~ 548 (605)
+....+.|.-++.+.+.++|+...+++++..++..+.+. .+..+|...|+|.+.+++..+
T Consensus 6 ak~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~ 68 (80)
T PF10579_consen 6 AKQQIEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQ 68 (80)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566677777777777777777777776666554443 334455666666666655443
No 348
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=88.30 E-value=12 Score=38.72 Aligned_cols=110 Identities=10% Similarity=-0.091 Sum_probs=84.2
Q ss_pred CCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHH-HHHHcCCHHHHHHHHHHHHhcCCC----
Q 007401 482 TNGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGT-SATYYSNRAA-AYLELGCFQQAEEDCSKTISLDKK---- 555 (605)
Q Consensus 482 ~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~-~~~~~~~~~~A~~~~~~al~~~p~---- 555 (605)
..++...-.+++.....+.++|-+.-|+++.+-.+.++|. ++..-...-+ ..++.++|+--++.++........
T Consensus 96 ~~eNR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~ 175 (360)
T PF04910_consen 96 RPENRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLS 175 (360)
T ss_pred cccchHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhh
Confidence 3445566678888888999999999999999999999998 6654444444 445667888778777776553221
Q ss_pred -CHHHHHHHHHHHHHccCH---------------HHHHHHHHHHHHhCCCCH
Q 007401 556 -NVKAYLRRGTAREALFCY---------------NEALQDFKHAMVLEPQNK 591 (605)
Q Consensus 556 -~~~~~~~la~~~~~~g~~---------------~~A~~~~~~al~~~p~~~ 591 (605)
-|..-|..+.+++.+++. ++|.+.+++|+...|.-.
T Consensus 176 ~lPn~a~S~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~vl 227 (360)
T PF04910_consen 176 LLPNFAFSIALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFPWVL 227 (360)
T ss_pred hCccHHHHHHHHHHHhcCccccccccccccccchhHHHHHHHHHHHHhHHHH
Confidence 245778899999999998 899999999999887543
No 349
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=88.28 E-value=4.9 Score=43.12 Aligned_cols=102 Identities=18% Similarity=0.015 Sum_probs=81.1
Q ss_pred HHCCCHHH-HHHHHHHHHHhCCCCHHHHHH--HHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHH
Q 007401 500 FKGKQWNK-AVNYYSEAIKLNGTSATYYSN--RAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEA 576 (605)
Q Consensus 500 ~~~g~~~~-A~~~~~~al~~~p~~~~~~~~--la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 576 (605)
+..++.+. ++..|...+.+++.++..+.. +...+...++...+....+.+++.+|++..++.+++.++...|....+
T Consensus 41 l~~~~~~~~~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~ 120 (620)
T COG3914 41 LNAEGLQALAIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLA 120 (620)
T ss_pred hcccCchhHHHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHH
Confidence 33444444 777788788889999887544 477777888888899999999999999999999999999888887777
Q ss_pred HHHHHH-HHHhCCCCHHHHHHHHHHH
Q 007401 577 LQDFKH-AMVLEPQNKAANLAEKRLR 601 (605)
Q Consensus 577 ~~~~~~-al~~~p~~~~~~~~~~~~~ 601 (605)
...+.. +....|++.......-.++
T Consensus 121 ~~~~~~~a~~~~~~~~~~~~~~~~~~ 146 (620)
T COG3914 121 LADISEIAEWLSPDNAEFLGHLIRFY 146 (620)
T ss_pred HHHHHHHHHhcCcchHHHHhhHHHHH
Confidence 666655 8999999998887774333
No 350
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=88.28 E-value=10 Score=32.02 Aligned_cols=66 Identities=12% Similarity=0.029 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-------CCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 007401 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKL-------NGTS----ATYYSNRAAAYLELGCFQQAEEDCSKTISL 552 (605)
Q Consensus 487 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~-------~p~~----~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 552 (605)
-++..+..++..+...|+|++++..-++++.. +.+. ..+-++++..+..+|+.++|+..|+.+-++
T Consensus 53 FDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM 129 (144)
T PF12968_consen 53 FDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM 129 (144)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 45667778889999999999999888888753 4444 334578999999999999999999988654
No 351
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=88.13 E-value=14 Score=36.93 Aligned_cols=97 Identities=23% Similarity=0.146 Sum_probs=73.0
Q ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHcc-----
Q 007401 502 GKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLE----LGCFQQAEEDCSKTISLDKKN-VKAYLRRGTAREALF----- 571 (605)
Q Consensus 502 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g----- 571 (605)
.+++.+|+++|+.+ ....++.+.+++|..|.. ..++.+|..+|++|.+..... ..+.++++.+|..-.
T Consensus 90 ~~~~~~A~~~~~~~--a~~g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~ 167 (292)
T COG0790 90 SRDKTKAADWYRCA--AADGLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAV 167 (292)
T ss_pred cccHHHHHHHHHHH--hhcccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcc
Confidence 44688999999954 445778899999999987 458999999999999886443 344888888886641
Q ss_pred --CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 007401 572 --CYNEALQDFKHAMVLEPQNKAANLAEKRLRK 602 (605)
Q Consensus 572 --~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 602 (605)
+.++|...|.++-... +..+...++.++.
T Consensus 168 ~~~~~~A~~~~~~aa~~~--~~~a~~~lg~~y~ 198 (292)
T COG0790 168 AYDDKKALYLYRKAAELG--NPDAQLLLGRMYE 198 (292)
T ss_pred cHHHHhHHHHHHHHHHhc--CHHHHHHHHHHHH
Confidence 3347999999888765 6677777766553
No 352
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=88.11 E-value=6.1 Score=34.77 Aligned_cols=80 Identities=11% Similarity=-0.117 Sum_probs=66.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhhC
Q 007401 526 YSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAANLAEKRLRKLIG 605 (605)
Q Consensus 526 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g 605 (605)
+..........++.+++...+...--+-|+.+..-..-|..+...|++.+|+..|+....-.+..+.....+..|+..+|
T Consensus 13 Li~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~ 92 (153)
T TIGR02561 13 LIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKG 92 (153)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcC
Confidence 34444555568899999998888888999999999999999999999999999999998877777888777777776553
No 353
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.71 E-value=11 Score=39.50 Aligned_cols=98 Identities=17% Similarity=0.098 Sum_probs=74.9
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-C--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-------
Q 007401 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGT-S--ATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKN------- 556 (605)
Q Consensus 487 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~--~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~------- 556 (605)
..++..+.+|.....-+.|++|...|..+.+.-.. + +.+-.++|..|+..++-+.- |+-.-.+.|.|
T Consensus 365 ~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL~~~~~ed~---y~~ld~i~p~nt~s~ssq 441 (629)
T KOG2300|consen 365 HEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYLRIGDAEDL---YKALDLIGPLNTNSLSSQ 441 (629)
T ss_pred hHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHhccHHHH---HHHHHhcCCCCCCcchHH
Confidence 45788899999999999999999999999986433 3 33446789999887764432 22222344442
Q ss_pred ---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Q 007401 557 ---VKAYLRRGTAREALFCYNEALQDFKHAMVLE 587 (605)
Q Consensus 557 ---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 587 (605)
..++|..|.-.+.++++.+|...+.+.++..
T Consensus 442 ~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkma 475 (629)
T KOG2300|consen 442 RLEASILYVYGLFAFKQNDLNEAKRFLRETLKMA 475 (629)
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc
Confidence 3478889999999999999999999999986
No 354
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=87.58 E-value=1.6 Score=43.25 Aligned_cols=62 Identities=16% Similarity=0.026 Sum_probs=51.0
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 007401 542 AEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAANLAEKRLRKL 603 (605)
Q Consensus 542 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~ 603 (605)
|..+|.+|+.+.|++...|+++|.++...|+.=+|+.+|-+++...--.+.+..++..+..+
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 67899999999999999999999999999999999999999997765557777777766554
No 355
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=87.47 E-value=16 Score=33.05 Aligned_cols=108 Identities=10% Similarity=-0.058 Sum_probs=75.1
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC--CC--HHHHHHHHHHHHHcCCHHHHHHHHHHHH-hcCCCCHHHHHHH
Q 007401 489 SELLKEKGNAAFKGKQWNKAVNYYSEAIKLNG--TS--ATYYSNRAAAYLELGCFQQAEEDCSKTI-SLDKKNVKAYLRR 563 (605)
Q Consensus 489 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p--~~--~~~~~~la~~~~~~~~~~~A~~~~~~al-~~~p~~~~~~~~l 563 (605)
.-..+..|....++|+-.+|+..|.++-.-.+ .- -.+...-+.++...+-|++...-.+..- ..+|--..+.-.+
T Consensus 94 vLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEAL 173 (221)
T COG4649 94 VLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREAL 173 (221)
T ss_pred HHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHH
Confidence 45667789999999999999999999866432 21 2334455667777888988766554422 2234344577779
Q ss_pred HHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 007401 564 GTAREALFCYNEALQDFKHAMVLEPQNKAANLAE 597 (605)
Q Consensus 564 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 597 (605)
|.+-++.|++.+|.+.|++... +.+.+....+.
T Consensus 174 glAa~kagd~a~A~~~F~qia~-Da~aprnirqR 206 (221)
T COG4649 174 GLAAYKAGDFAKAKSWFVQIAN-DAQAPRNIRQR 206 (221)
T ss_pred hHHHHhccchHHHHHHHHHHHc-cccCcHHHHHH
Confidence 9999999999999999998776 43334333333
No 356
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.37 E-value=3.6 Score=44.45 Aligned_cols=76 Identities=12% Similarity=-0.004 Sum_probs=64.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC------CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 007401 524 TYYSNRAAAYLELGCFQQAEEDCSKTISLDKK------NVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAANLAE 597 (605)
Q Consensus 524 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 597 (605)
.++.+-|.-+++..+|..+++.|...++--|. +.+...++..||..+.+.++|++++++|-+.+|.++.....+
T Consensus 355 ~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~ 434 (872)
T KOG4814|consen 355 TLLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLM 434 (872)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHH
Confidence 56677888889999999999999999887654 366888899999999999999999999999999987665554
Q ss_pred HH
Q 007401 598 KR 599 (605)
Q Consensus 598 ~~ 599 (605)
-.
T Consensus 435 ~~ 436 (872)
T KOG4814|consen 435 LQ 436 (872)
T ss_pred HH
Confidence 33
No 357
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=87.32 E-value=19 Score=38.98 Aligned_cols=115 Identities=9% Similarity=-0.036 Sum_probs=98.4
Q ss_pred CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCCHHHHH
Q 007401 483 NGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISL-DKKNVKAYL 561 (605)
Q Consensus 483 ~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~ 561 (605)
+..+.+...|....+.-...|+++.....|++++-......+.|...+......|+..-|-..+.++.+. .+.-+..+.
T Consensus 291 pl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L 370 (577)
T KOG1258|consen 291 PLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHL 370 (577)
T ss_pred cccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHH
Confidence 3455677889988999999999999999999999988899999999999999999999888888887776 466788888
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 007401 562 RRGTAREALFCYNEALQDFKHAMVLEPQNKAANLAE 597 (605)
Q Consensus 562 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 597 (605)
..+..-...|++..|...+++...-.|+...+-...
T Consensus 371 ~~a~f~e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~ 406 (577)
T KOG1258|consen 371 LEARFEESNGNFDDAKVILQRIESEYPGLVEVVLRK 406 (577)
T ss_pred HHHHHHHhhccHHHHHHHHHHHHhhCCchhhhHHHH
Confidence 888888999999999999999998888776554333
No 358
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=87.29 E-value=4.7 Score=31.24 Aligned_cols=58 Identities=14% Similarity=-0.041 Sum_probs=45.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHH---HHHHHHHHccCHHHHHHHHHHH
Q 007401 526 YSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYL---RRGTAREALFCYNEALQDFKHA 583 (605)
Q Consensus 526 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~---~la~~~~~~g~~~~A~~~~~~a 583 (605)
....|.-++..++.++|+..++++++..++.+.-+. .+..+|...|+|++.+++--+=
T Consensus 9 ~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q 69 (80)
T PF10579_consen 9 QIEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQ 69 (80)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566677889999999999999999887766444 4566789999999988765443
No 359
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=87.11 E-value=0.8 Score=27.13 Aligned_cols=23 Identities=26% Similarity=-0.050 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHccCHHHHHHHHH
Q 007401 559 AYLRRGTAREALFCYNEALQDFK 581 (605)
Q Consensus 559 ~~~~la~~~~~~g~~~~A~~~~~ 581 (605)
+.+.+|.++...|++++|...++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 44555666666666666655543
No 360
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=86.98 E-value=8.2 Score=40.36 Aligned_cols=95 Identities=16% Similarity=0.131 Sum_probs=67.9
Q ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHH
Q 007401 497 NAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEA 576 (605)
Q Consensus 497 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 576 (605)
...+..|+...|-.....++...|..+..-..++.+...+|+|+++..++.-+-..--.-.++...+-..++.++++++|
T Consensus 297 ~k~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a 376 (831)
T PRK15180 297 TKQLADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREA 376 (831)
T ss_pred HHHhhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHH
Confidence 34467889988988888899999999888888899999999999998887766554333344555555566677777777
Q ss_pred HHHHHHHHHhCCCCH
Q 007401 577 LQDFKHAMVLEPQNK 591 (605)
Q Consensus 577 ~~~~~~al~~~p~~~ 591 (605)
...-+..+.-+-+++
T Consensus 377 ~s~a~~~l~~eie~~ 391 (831)
T PRK15180 377 LSTAEMMLSNEIEDE 391 (831)
T ss_pred HHHHHHHhccccCCh
Confidence 666655554443333
No 361
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=86.45 E-value=37 Score=38.08 Aligned_cols=109 Identities=16% Similarity=0.062 Sum_probs=79.0
Q ss_pred hHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCCC--CH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC---
Q 007401 486 IDASELLKEKGNAAF-KGKQWNKAVNYYSEAIKLNGT--SA----TYYSNRAAAYLELGCFQQAEEDCSKTISLDKK--- 555 (605)
Q Consensus 486 ~~~a~~~~~~g~~~~-~~g~~~~A~~~~~~al~~~p~--~~----~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~--- 555 (605)
..++.....+|..++ ...++++|..+++|++.+... .. .+.+.++.++.+.+... |...++++++.-.+
T Consensus 56 ~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~ 134 (608)
T PF10345_consen 56 RQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGH 134 (608)
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCc
Confidence 457899999999998 689999999999999887643 22 23456688888877777 99999999987544
Q ss_pred -CHHHHHHHHH--HHHHccCHHHHHHHHHHHHHhC--CCCHHHHH
Q 007401 556 -NVKAYLRRGT--AREALFCYNEALQDFKHAMVLE--PQNKAANL 595 (605)
Q Consensus 556 -~~~~~~~la~--~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~ 595 (605)
.+...+++-. .+...+++..|++.++...... .++.....
T Consensus 135 ~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v 179 (608)
T PF10345_consen 135 SAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFV 179 (608)
T ss_pred hhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHH
Confidence 3333333332 2223379999999999988876 35554433
No 362
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=86.33 E-value=4.7 Score=44.01 Aligned_cols=85 Identities=12% Similarity=0.155 Sum_probs=65.1
Q ss_pred hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 007401 486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGT 565 (605)
Q Consensus 486 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~ 565 (605)
...-+++.++|..+.....+++|.++|.+.-. ..++..|++.+++|.+ ++.....-|++.+.+-.+|.
T Consensus 793 ~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~--------~e~~~ecly~le~f~~----LE~la~~Lpe~s~llp~~a~ 860 (1189)
T KOG2041|consen 793 EGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD--------TENQIECLYRLELFGE----LEVLARTLPEDSELLPVMAD 860 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--------hHhHHHHHHHHHhhhh----HHHHHHhcCcccchHHHHHH
Confidence 44568899999999999999999999987533 3477888888888876 44444555777777778888
Q ss_pred HHHHccCHHHHHHHHHH
Q 007401 566 AREALFCYNEALQDFKH 582 (605)
Q Consensus 566 ~~~~~g~~~~A~~~~~~ 582 (605)
.+...|--++|.++|-+
T Consensus 861 mf~svGMC~qAV~a~Lr 877 (1189)
T KOG2041|consen 861 MFTSVGMCDQAVEAYLR 877 (1189)
T ss_pred HHHhhchHHHHHHHHHh
Confidence 88888888888777644
No 363
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=85.57 E-value=9.7 Score=43.03 Aligned_cols=100 Identities=15% Similarity=0.042 Sum_probs=82.4
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC---------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC--
Q 007401 488 ASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGT---------SATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKN-- 556 (605)
Q Consensus 488 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~---------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~-- 556 (605)
........++.+..+.+|.+|.....++...-+. .+.....+|.+....+++++|++..+.++..-|.+
T Consensus 414 ~P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~ 493 (894)
T COG2909 414 TPRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAY 493 (894)
T ss_pred CchHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccc
Confidence 4556677899999999999999998888765433 24566678888899999999999999999887765
Q ss_pred ---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Q 007401 557 ---VKAYLRRGTAREALFCYNEALQDFKHAMVLE 587 (605)
Q Consensus 557 ---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 587 (605)
..++...|.+..-.|++++|..+.+.+.+..
T Consensus 494 ~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a 527 (894)
T COG2909 494 RSRIVALSVLGEAAHIRGELTQALALMQQAEQMA 527 (894)
T ss_pred hhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHH
Confidence 3477889999999999999999999888874
No 364
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=85.36 E-value=2.8 Score=43.65 Aligned_cols=101 Identities=15% Similarity=0.202 Sum_probs=76.7
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 007401 490 ELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREA 569 (605)
Q Consensus 490 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 569 (605)
......+.+....|+|+++...+..+-+.-..-.....-+-...+.++++++|.......+.-+-+.++..---+....+
T Consensus 324 ~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie~~ei~~iaa~sa~~ 403 (831)
T PRK15180 324 VLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEIEDEEVLTVAAGSADA 403 (831)
T ss_pred hhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHHHHHHHhccccCChhheeeecccHHH
Confidence 33445577888899999999887766554444445555555666788999999988888877777778877777777788
Q ss_pred ccCHHHHHHHHHHHHHhCCCC
Q 007401 570 LFCYNEALQDFKHAMVLEPQN 590 (605)
Q Consensus 570 ~g~~~~A~~~~~~al~~~p~~ 590 (605)
+|-++++.-.+++.+.++|..
T Consensus 404 l~~~d~~~~~wk~~~~~~~~~ 424 (831)
T PRK15180 404 LQLFDKSYHYWKRVLLLNPET 424 (831)
T ss_pred HhHHHHHHHHHHHHhccCChh
Confidence 888999999999999988753
No 365
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=85.15 E-value=9.3 Score=35.11 Aligned_cols=65 Identities=12% Similarity=0.053 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Q 007401 523 ATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKN---VKAYLRRGTAREALFCYNEALQDFKHAMVLE 587 (605)
Q Consensus 523 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 587 (605)
-.++..+|..|.+.|++++|++.|.++....... ...++++-.+....+++......+.++-.+-
T Consensus 36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~ 103 (177)
T PF10602_consen 36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLI 103 (177)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 4688899999999999999999999988765432 4588889999999999999999999987663
No 366
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.03 E-value=15 Score=38.59 Aligned_cols=95 Identities=15% Similarity=-0.007 Sum_probs=76.7
Q ss_pred HHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhC---CCC----HHHHHHHHHHHHHcC-CHHHHHHHHHHHHhcCCCCH
Q 007401 487 DASELLKEKGNAAF-KGKQWNKAVNYYSEAIKLN---GTS----ATYYSNRAAAYLELG-CFQQAEEDCSKTISLDKKNV 557 (605)
Q Consensus 487 ~~a~~~~~~g~~~~-~~g~~~~A~~~~~~al~~~---p~~----~~~~~~la~~~~~~~-~~~~A~~~~~~al~~~p~~~ 557 (605)
-++....++|..++ ...+.+.|...++++..+. |++ .+++..++++|.+.. .+..+...+++++++..+++
T Consensus 44 veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~fydvKf~a~SlLa~lh~~~~~s~~~~KalLrkaielsq~~p 123 (629)
T KOG2300|consen 44 VEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSFYDVKFQAASLLAHLHHQLAQSFPPAKALLRKAIELSQSVP 123 (629)
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccHHhhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCc
Confidence 45777788888775 4789999999999998764 333 456778999999888 78899999999999987766
Q ss_pred H----HHHHHHHHHHHccCHHHHHHHHH
Q 007401 558 K----AYLRRGTAREALFCYNEALQDFK 581 (605)
Q Consensus 558 ~----~~~~la~~~~~~g~~~~A~~~~~ 581 (605)
. ..+.++..+.-..++..|.+.+.
T Consensus 124 ~wsckllfQLaql~~idkD~~sA~elLa 151 (629)
T KOG2300|consen 124 YWSCKLLFQLAQLHIIDKDFPSALELLA 151 (629)
T ss_pred hhhHHHHHHHHHHHhhhccchhHHHHHh
Confidence 3 66778999999999999988854
No 367
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=84.58 E-value=5.9 Score=32.96 Aligned_cols=71 Identities=20% Similarity=0.133 Sum_probs=56.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCH---HHHHHHHHHHHHccC-----------HHHHHHHHHHHHHhCCCCHHHH
Q 007401 529 RAAAYLELGCFQQAEEDCSKTISLDKKNV---KAYLRRGTAREALFC-----------YNEALQDFKHAMVLEPQNKAAN 594 (605)
Q Consensus 529 la~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~-----------~~~A~~~~~~al~~~p~~~~~~ 594 (605)
++.-++..|++-+|++..+..+..+.++. ..+...|.++.++.. ...++++|.++..+.|..+..+
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L 81 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSL 81 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHH
Confidence 56778899999999999999999887665 566667777755543 4558999999999999887776
Q ss_pred HHHHH
Q 007401 595 LAEKR 599 (605)
Q Consensus 595 ~~~~~ 599 (605)
..++.
T Consensus 82 ~~la~ 86 (111)
T PF04781_consen 82 FELAS 86 (111)
T ss_pred HHHHH
Confidence 66654
No 368
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=84.58 E-value=1.3 Score=26.22 Aligned_cols=22 Identities=27% Similarity=0.019 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHH
Q 007401 525 YYSNRAAAYLELGCFQQAEEDC 546 (605)
Q Consensus 525 ~~~~la~~~~~~~~~~~A~~~~ 546 (605)
+.+++|..+...|++++|...+
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l 24 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLL 24 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHH
Confidence 3444555555555555554444
No 369
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=84.26 E-value=9.4 Score=40.66 Aligned_cols=95 Identities=12% Similarity=-0.023 Sum_probs=71.9
Q ss_pred CCCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHH
Q 007401 480 PDTNGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKA 559 (605)
Q Consensus 480 ~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 559 (605)
.....+|.+...|+.+-..+..+ .+++.-+.|++.+...|..+.+|.......+..++|+...+.|.+++..-- |.+.
T Consensus 11 ~rie~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvL-nlDL 88 (656)
T KOG1914|consen 11 ERIEENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVL-NLDL 88 (656)
T ss_pred HHHhcCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh-hHhH
Confidence 34567888889999887776655 999999999999999999999999999999999999999999999886433 2444
Q ss_pred HHH-HHHHHHHccCHHHH
Q 007401 560 YLR-RGTAREALFCYNEA 576 (605)
Q Consensus 560 ~~~-la~~~~~~g~~~~A 576 (605)
|-. +-.+....++...+
T Consensus 89 W~lYl~YVR~~~~~~~~~ 106 (656)
T KOG1914|consen 89 WKLYLSYVRETKGKLFGY 106 (656)
T ss_pred HHHHHHHHHHHccCcchH
Confidence 432 34444445554443
No 370
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=83.88 E-value=23 Score=36.57 Aligned_cols=108 Identities=16% Similarity=0.100 Sum_probs=83.1
Q ss_pred HHHHHHHCCCH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC------------CHHHHHHHHHHHHhcCCCCHHHHH
Q 007401 495 KGNAAFKGKQW-NKAVNYYSEAIKLNGTSATYYSNRAAAYLELG------------CFQQAEEDCSKTISLDKKNVKAYL 561 (605)
Q Consensus 495 ~g~~~~~~g~~-~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~------------~~~~A~~~~~~al~~~p~~~~~~~ 561 (605)
.-....+.|.| +++++.=.+.+..+|+...+|+.+=.++.... -.++-+.....+++.+|+...+|+
T Consensus 34 ~i~~~r~~~~yd~e~l~lt~~ll~~npe~~t~wN~Rr~~~~~r~~~~~~~~~ek~~~ld~eL~~~~~~L~~npksY~aW~ 113 (421)
T KOG0529|consen 34 IIQKKREAKEYDEEHLELTSELLEKNPEFYTVWNYRRLIIEERLTRAQLEPLEKQALLDEELKYVESALKVNPKSYGAWH 113 (421)
T ss_pred HHHHHHhccccchHHHHHHHHHHhhCchhhhhhhhHHHHHHHhhhhhcCCHHHHHHhhHHHHHHHHHHHHhCchhHHHHH
Confidence 33344456666 45777777788889999888887665554322 256667788899999999999999
Q ss_pred HHHHHHHHccC--HHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 007401 562 RRGTAREALFC--YNEALQDFKHAMVLEPQNKAANLAEKRLRK 602 (605)
Q Consensus 562 ~la~~~~~~g~--~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 602 (605)
.+..++.+.+. +..=++.++++++.+|.|-.++.+...+..
T Consensus 114 hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~ 156 (421)
T KOG0529|consen 114 HRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVE 156 (421)
T ss_pred HHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHH
Confidence 99999987765 578889999999999999888877766544
No 371
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=83.58 E-value=14 Score=38.03 Aligned_cols=103 Identities=17% Similarity=0.131 Sum_probs=77.2
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----C-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CC--CCH
Q 007401 488 ASELLKEKGNAAFKGKQWNKAVNYYSEAIKLN-----G-TSATYYSNRAAAYLELGCFQQAEEDCSKTISL--DK--KNV 557 (605)
Q Consensus 488 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-----p-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p--~~~ 557 (605)
.+..|+-+...+...++...=-..+...+... . ..+...+.+=.+|+..+.|++|.+...+..-- +. +.+
T Consensus 168 ~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qavLiN~LLr~yL~n~lydqa~~lvsK~~~pe~~snne~A 247 (493)
T KOG2581|consen 168 AAKLYFYLYLSYELEGRLADIRSFLHALLRTATLRHDEEGQAVLINLLLRNYLHNKLYDQADKLVSKSVYPEAASNNEWA 247 (493)
T ss_pred HHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcchhHHHHHHHHHHHHhhhHHHHHHHHHhhcccCccccccHHHH
Confidence 46677777888888888666666665555432 1 12455666778888888999999988886522 22 335
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC
Q 007401 558 KAYLRRGTAREALFCYNEALQDFKHAMVLEPQN 590 (605)
Q Consensus 558 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 590 (605)
..+|++|.+..-+.+|..|.+++-+|+...|++
T Consensus 248 RY~yY~GrIkaiqldYssA~~~~~qa~rkapq~ 280 (493)
T KOG2581|consen 248 RYLYYLGRIKAIQLDYSSALEYFLQALRKAPQH 280 (493)
T ss_pred HHHHHHhhHHHhhcchhHHHHHHHHHHHhCcch
Confidence 678889999999999999999999999999974
No 372
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=83.49 E-value=17 Score=36.22 Aligned_cols=100 Identities=11% Similarity=-0.024 Sum_probs=52.5
Q ss_pred ChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-----------------------CCHHH--HHHHHHHHHHcCCH
Q 007401 485 SIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNG-----------------------TSATY--YSNRAAAYLELGCF 539 (605)
Q Consensus 485 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-----------------------~~~~~--~~~la~~~~~~~~~ 539 (605)
+++.+.+|..++..-. .-..+|.+.++++++... .+... -..++.|..++|+.
T Consensus 214 N~eCA~AyvLLAEEEa--~Ti~~AE~l~k~ALka~e~~yr~sqq~qh~~~~~da~~rRDtnvl~YIKRRLAMCARklGrl 291 (556)
T KOG3807|consen 214 NNECATAYVLLAEEEA--TTIVDAERLFKQALKAGETIYRQSQQCQHQSPQHEAQLRRDTNVLVYIKRRLAMCARKLGRL 291 (556)
T ss_pred CchhhhHHHhhhhhhh--hhHHHHHHHHHHHHHHHHHHHhhHHHHhhhccchhhhhhcccchhhHHHHHHHHHHHHhhhH
Confidence 4556666666554332 245566777777765310 11112 23456666666666
Q ss_pred HHHHHHHHHHHhcCCCC--HHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q 007401 540 QQAEEDCSKTISLDKKN--VKAYLRRGTAREALFCYNEALQDFKHAMVL 586 (605)
Q Consensus 540 ~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 586 (605)
.+|++.++-..+-.|-. ...+-++-.++.++.-|.+....+.++-++
T Consensus 292 rEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvqavLakYDdi 340 (556)
T KOG3807|consen 292 REAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQAVLAKYDDI 340 (556)
T ss_pred HHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 66666666655555422 124455555666665555555555544433
No 373
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=82.88 E-value=14 Score=34.51 Aligned_cols=73 Identities=12% Similarity=0.015 Sum_probs=54.0
Q ss_pred CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC----CHHHHHHHHHHHHHccCHHHHH
Q 007401 504 QWNKAVNYYSEAIKLN-GTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKK----NVKAYLRRGTAREALFCYNEAL 577 (605)
Q Consensus 504 ~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~----~~~~~~~la~~~~~~g~~~~A~ 577 (605)
.=++|...|-++-... =++++..+.+|..|. ..+.++++..+.+++++... |++.+..++.++.+++++++|-
T Consensus 121 ~d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 121 GDQEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred CcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 3355666655543321 256888888887765 67888999999999987532 5889999999999999998874
No 374
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=82.26 E-value=6.2 Score=26.89 Aligned_cols=25 Identities=12% Similarity=-0.045 Sum_probs=18.5
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHH
Q 007401 561 LRRGTAREALFCYNEALQDFKHAMV 585 (605)
Q Consensus 561 ~~la~~~~~~g~~~~A~~~~~~al~ 585 (605)
+.+|.+|..+|+++.|.+.+++.+.
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH
Confidence 4577777777777777777777774
No 375
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=82.11 E-value=7.6 Score=29.91 Aligned_cols=32 Identities=19% Similarity=0.194 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Q 007401 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKL 518 (605)
Q Consensus 487 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~ 518 (605)
+.+..+...|..+-+.|++++|+.+|+++++.
T Consensus 4 ~~A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe~ 35 (75)
T cd02682 4 EMARKYAINAVKAEKEGNAEDAITNYKKAIEV 35 (75)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 45667778888888899999988888887753
No 376
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=82.00 E-value=0.97 Score=45.27 Aligned_cols=82 Identities=18% Similarity=0.097 Sum_probs=68.3
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcc
Q 007401 492 LKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREALF 571 (605)
Q Consensus 492 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 571 (605)
..+.+.+.++.+++..|+..-..++..+++...+++.+++.++.+.++++|++++..+....|++....-.+...-....
T Consensus 278 ~~n~~~~~lk~~~~~~a~~~~~~~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~~~~~~ 357 (372)
T KOG0546|consen 278 RRNLAAVGLKVKGRGGARFRTNEALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENVRQKKK 357 (372)
T ss_pred ccchHHhcccccCCCcceeccccccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHhhhHHH
Confidence 34467788889999999998888888888999999999999999999999999999999999998876666655554444
Q ss_pred CH
Q 007401 572 CY 573 (605)
Q Consensus 572 ~~ 573 (605)
++
T Consensus 358 ~~ 359 (372)
T KOG0546|consen 358 QY 359 (372)
T ss_pred HH
Confidence 43
No 377
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=81.96 E-value=13 Score=39.62 Aligned_cols=75 Identities=12% Similarity=0.019 Sum_probs=67.7
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Q 007401 513 SEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEP 588 (605)
Q Consensus 513 ~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 588 (605)
++-|+.+|.+.+.|+.+-.-+... -+++..+.|++.+...|..+.+|-.........++|+.-.+.|.++|...=
T Consensus 10 ~~rie~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvL 84 (656)
T KOG1914|consen 10 RERIEENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVL 84 (656)
T ss_pred HHHHhcCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh
Confidence 667889999999999998877555 899999999999999999999999999999999999999999999986543
No 378
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=81.87 E-value=9.3 Score=42.72 Aligned_cols=63 Identities=19% Similarity=0.064 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHH----------HhcCC----------CCHHHHHHHHHHHHHccCHHHHHHHHHH
Q 007401 523 ATYYSNRAAAYLELGCFQQAEEDCSKT----------ISLDK----------KNVKAYLRRGTAREALFCYNEALQDFKH 582 (605)
Q Consensus 523 ~~~~~~la~~~~~~~~~~~A~~~~~~a----------l~~~p----------~~~~~~~~la~~~~~~g~~~~A~~~~~~ 582 (605)
-..|++.|.-+...++.+.|+++|+++ ++-+| .+...|--.|..+...|+.+.|+..|..
T Consensus 858 r~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~ 937 (1416)
T KOG3617|consen 858 RNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSS 937 (1416)
T ss_pred hhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHH
Confidence 346788888888888999999999874 22233 2344666678888889999999988887
Q ss_pred HHH
Q 007401 583 AMV 585 (605)
Q Consensus 583 al~ 585 (605)
|-.
T Consensus 938 A~D 940 (1416)
T KOG3617|consen 938 AKD 940 (1416)
T ss_pred hhh
Confidence 754
No 379
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=81.83 E-value=15 Score=46.08 Aligned_cols=115 Identities=15% Similarity=0.045 Sum_probs=91.2
Q ss_pred ChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC--------
Q 007401 485 SIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKN-------- 556 (605)
Q Consensus 485 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~-------- 556 (605)
+..-++.|.+.|...-+.|+++.|..+.-+|.+.. -+.++..+|....+.|+-..|+..+++.+..+-.+
T Consensus 1666 ~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~ 1743 (2382)
T KOG0890|consen 1666 KSRLGECWLQSARIARLAGHLQRAQNALLNAKESR--LPEIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTDT 1743 (2382)
T ss_pred cchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc--cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCcccc
Confidence 45668999999999999999999999999988876 67899999999999999999999999999664222
Q ss_pred ---------HHHHHHHHHHHHHccCH--HHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 007401 557 ---------VKAYLRRGTAREALFCY--NEALQDFKHAMVLEPQNKAANLAEKRLR 601 (605)
Q Consensus 557 ---------~~~~~~la~~~~~~g~~--~~A~~~~~~al~~~p~~~~~~~~~~~~~ 601 (605)
..+.+..+.-..+.+++ ++-++.|..+.++.|++..-+++++.-+
T Consensus 1744 p~~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ewe~~hy~l~~yy 1799 (2382)
T KOG0890|consen 1744 PQSVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILPEWEDKHYHLGKYY 1799 (2382)
T ss_pred chhhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcccccCceeeHHHHH
Confidence 22455555666666664 4457789999999998877777666433
No 380
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=81.15 E-value=5.6 Score=39.17 Aligned_cols=54 Identities=17% Similarity=0.015 Sum_probs=47.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHH
Q 007401 529 RAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKH 582 (605)
Q Consensus 529 la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 582 (605)
-+.-....+++.+|...+..++..+|++..+...++.||...|+.+.|...+..
T Consensus 140 ~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~ 193 (304)
T COG3118 140 EAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAA 193 (304)
T ss_pred HhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHh
Confidence 344455789999999999999999999999999999999999999988877764
No 381
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=81.14 E-value=6.1 Score=38.73 Aligned_cols=57 Identities=19% Similarity=0.142 Sum_probs=34.6
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 007401 492 LKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSK 548 (605)
Q Consensus 492 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~ 548 (605)
+...+..|...|.+.+|+.+.++++.++|-+...+..+-..+..+|+--.+++.|++
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyer 338 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYER 338 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHH
Confidence 334455556666666666666666666666666666666666666665555555544
No 382
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=80.89 E-value=11 Score=39.03 Aligned_cols=96 Identities=21% Similarity=0.184 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHH-----------HHhCCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHH
Q 007401 491 LLKEKGNAAFKGKQWNKAVNYYSEA-----------IKLNGTSATYYSNRAAAYLELGC----------FQQAEEDCSKT 549 (605)
Q Consensus 491 ~~~~~g~~~~~~g~~~~A~~~~~~a-----------l~~~p~~~~~~~~la~~~~~~~~----------~~~A~~~~~~a 549 (605)
.+++.|..+++...|++|+.++-.| ++.-.+++..-..+-+||+.+.+ ...|.+.|.++
T Consensus 165 g~hekaRa~m~re~y~eAl~~LleADe~F~~Cd~klLe~VDNyallnLDIVWCYfrLknitcL~DAe~RL~ra~kgf~~s 244 (568)
T KOG2561|consen 165 GLHEKARAAMEREMYSEALLVLLEADESFSLCDSKLLELVDNYALLNLDIVWCYFRLKNITCLPDAEVRLVRARKGFERS 244 (568)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcchhhhhcchhheehhhcccccCChHHHHHHHHHHhhhhh
Confidence 3445566666666666666655444 34445566666778899988875 22333333332
Q ss_pred --------HhcC-CCCHH------HHHHHHHHHHHccCHHHHHHHHHHHHHh
Q 007401 550 --------ISLD-KKNVK------AYLRRGTAREALFCYNEALQDFKHAMVL 586 (605)
Q Consensus 550 --------l~~~-p~~~~------~~~~la~~~~~~g~~~~A~~~~~~al~~ 586 (605)
..+. +..++ .++..|...+++|+-++|.++++.+...
T Consensus 245 yGenl~Rl~~lKg~~spEraL~lRL~LLQGV~~yHqg~~deAye~le~a~~~ 296 (568)
T KOG2561|consen 245 YGENLSRLRSLKGGQSPERALILRLELLQGVVAYHQGQRDEAYEALESAHAK 296 (568)
T ss_pred hhhhhHhhhhccCCCChhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 1111 22332 5556788999999999999999988643
No 383
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=79.80 E-value=7.7 Score=36.09 Aligned_cols=56 Identities=18% Similarity=0.218 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHcCCHHHHH
Q 007401 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGT----SATYYSNRAAAYLELGCFQQAE 543 (605)
Q Consensus 487 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~la~~~~~~~~~~~A~ 543 (605)
+.++..+.+|..|. ..+.++|+..|.+++++.+. |++++..++.+|++++++++|-
T Consensus 139 ~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 139 ETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred CCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 45778888886665 78999999999999998543 5999999999999999999874
No 384
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=79.72 E-value=27 Score=37.68 Aligned_cols=31 Identities=6% Similarity=-0.072 Sum_probs=14.8
Q ss_pred hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q 007401 486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAI 516 (605)
Q Consensus 486 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al 516 (605)
|=..+.+.+++...-.+|+.+-|-...++++
T Consensus 281 PYHvdsLLqva~~~r~qgD~e~aadLieR~L 311 (665)
T KOG2422|consen 281 PYHVDSLLQVADIFRFQGDREMAADLIERGL 311 (665)
T ss_pred CcchhHHHHHHHHHHHhcchhhHHHHHHHHH
Confidence 3344444444444444555554444444444
No 385
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=79.60 E-value=25 Score=33.18 Aligned_cols=94 Identities=13% Similarity=0.034 Sum_probs=68.6
Q ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH---HHHHHHHHHHHc--
Q 007401 496 GNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVK---AYLRRGTAREAL-- 570 (605)
Q Consensus 496 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~---~~~~la~~~~~~-- 570 (605)
...+.+.++.++|+...+.-++-+|.+......+-+.+.-.|+|++|...++-+-++.|++.. .|..+-.|....
T Consensus 8 ~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ea~R~e 87 (273)
T COG4455 8 ISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRCEAARNE 87 (273)
T ss_pred HHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHHH
Confidence 446778889999999999999999999988888888888999999999999999999887643 444444443211
Q ss_pred ------------cCHHHHHHHHHHHHHhCCC
Q 007401 571 ------------FCYNEALQDFKHAMVLEPQ 589 (605)
Q Consensus 571 ------------g~~~~A~~~~~~al~~~p~ 589 (605)
|...+=+..+..++.+..+
T Consensus 88 vfag~~~Pgflg~p~p~wva~L~aala~h~d 118 (273)
T COG4455 88 VFAGGAVPGFLGGPSPEWVAALLAALALHSD 118 (273)
T ss_pred HhccCCCCCCcCCCCHHHHHHHHHHHhcccC
Confidence 2344445556666666544
No 386
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=79.48 E-value=6.6 Score=34.52 Aligned_cols=50 Identities=16% Similarity=0.198 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 007401 489 SELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGC 538 (605)
Q Consensus 489 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~ 538 (605)
.+.....+...+..|+|.-|.+..+.++..+|++..+...++.++.+++.
T Consensus 70 ~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~ 119 (141)
T PF14863_consen 70 ADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGY 119 (141)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHH
Confidence 56666777777777777777777777777777777777777777665543
No 387
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=79.38 E-value=22 Score=34.61 Aligned_cols=61 Identities=15% Similarity=0.055 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 007401 489 SELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTS------ATYYSNRAAAYLELGCFQQAEEDCSKT 549 (605)
Q Consensus 489 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~a 549 (605)
.....++|..|++.|+|++|+++|+.+....-.. ..++..+-.|+..+++.+..+...-+.
T Consensus 178 ~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 178 SYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 4556678888888888888888888886543221 456667777888888877766655443
No 388
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=79.05 E-value=19 Score=35.01 Aligned_cols=62 Identities=15% Similarity=0.045 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC--CC----HHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 007401 523 ATYYSNRAAAYLELGCFQQAEEDCSKTISLDK--KN----VKAYLRRGTAREALFCYNEALQDFKHAM 584 (605)
Q Consensus 523 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p--~~----~~~~~~la~~~~~~g~~~~A~~~~~~al 584 (605)
..+...+|.-|+..|+|++|++.|+.+....- .. ......+..|+.++|+.++.+...-+.+
T Consensus 178 ~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leLl 245 (247)
T PF11817_consen 178 SYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLELL 245 (247)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 35567899999999999999999999965532 11 3477778899999999998877655443
No 389
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=78.93 E-value=6.2 Score=46.36 Aligned_cols=103 Identities=10% Similarity=0.067 Sum_probs=83.3
Q ss_pred ChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---
Q 007401 485 SIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKL--------NGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLD--- 553 (605)
Q Consensus 485 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--- 553 (605)
.++.+..|..++..+.+.+++++|+..-.++.-+ .|+....|.+++...+..++...|+..+.++.++.
T Consensus 969 h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls 1048 (1236)
T KOG1839|consen 969 HPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLS 1048 (1236)
T ss_pred chhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccc
Confidence 4667888999999999999999999988887643 24557788899988888888888988888887762
Q ss_pred -----CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Q 007401 554 -----KKNVKAYLRRGTAREALFCYNEALQDFKHAMVLE 587 (605)
Q Consensus 554 -----p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 587 (605)
|.-.....++..++...++++.|+.+++.|++++
T Consensus 1049 ~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~ 1087 (1236)
T KOG1839|consen 1049 SGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKN 1087 (1236)
T ss_pred cCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 3334466778888888899999999999998864
No 390
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=78.60 E-value=7.3 Score=34.22 Aligned_cols=53 Identities=30% Similarity=0.179 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHH
Q 007401 523 ATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNE 575 (605)
Q Consensus 523 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 575 (605)
.+....++...+..|+|+.|.+.++.++..+|+|..+...++.+|.++|.-.+
T Consensus 70 ~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~~~ 122 (141)
T PF14863_consen 70 ADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQSE 122 (141)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-S
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhcc
Confidence 45666777778889999999999999999999999999999999999886543
No 391
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=78.32 E-value=4.8 Score=41.93 Aligned_cols=90 Identities=18% Similarity=0.151 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCC---------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHH
Q 007401 491 LLKEKGNAAFKGKQWNKAVNYYSEAIKLNG---------TSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYL 561 (605)
Q Consensus 491 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p---------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 561 (605)
.+..+-..+.-.|||..|++.++.. +++. -+...++..|.+|+.+++|.+|++.|...+ .+.
T Consensus 124 SligLlRvh~LLGDY~~Alk~l~~i-dl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL--------~yi 194 (404)
T PF10255_consen 124 SLIGLLRVHCLLGDYYQALKVLENI-DLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL--------LYI 194 (404)
T ss_pred HHHHHHHHHHhccCHHHHHHHhhcc-CcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH--------HHH
Confidence 3445667778899999999987764 2222 235678899999999999999999997765 444
Q ss_pred HHHHH--HHHc-------cCHHHHHHHHHHHHHhCCC
Q 007401 562 RRGTA--REAL-------FCYNEALQDFKHAMVLEPQ 589 (605)
Q Consensus 562 ~la~~--~~~~-------g~~~~A~~~~~~al~~~p~ 589 (605)
.+..- +.+. +..++....+.-++.+.|.
T Consensus 195 ~r~k~~~~~~~~q~d~i~K~~eqMyaLlAic~~l~p~ 231 (404)
T PF10255_consen 195 QRTKNQYHQRSYQYDQINKKNEQMYALLAICLSLCPQ 231 (404)
T ss_pred HHhhhhhccccchhhHHHhHHHHHHHHHHHHHHhCCC
Confidence 44441 1121 2334444455555666674
No 392
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=78.17 E-value=10 Score=37.29 Aligned_cols=61 Identities=18% Similarity=0.109 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 007401 525 YYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMV 585 (605)
Q Consensus 525 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 585 (605)
.+...+..|...|.+.+|++..++++++||-+...+.-+-.++...|+--.+.+.|++.-+
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 4445677788899999999999999999999999999999999999998888888877643
No 393
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=76.91 E-value=15 Score=34.55 Aligned_cols=60 Identities=15% Similarity=0.062 Sum_probs=54.9
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH
Q 007401 532 AYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNK 591 (605)
Q Consensus 532 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 591 (605)
-+++.+..++++...+.-++-+|.+......+-..|.-.|+|++|+..++.+-+++|++.
T Consensus 10 eLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t 69 (273)
T COG4455 10 ELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDT 69 (273)
T ss_pred HHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccc
Confidence 456778899999999999999999999888889999999999999999999999999874
No 394
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=76.69 E-value=8.7 Score=40.07 Aligned_cols=32 Identities=13% Similarity=0.075 Sum_probs=28.0
Q ss_pred hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q 007401 486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIK 517 (605)
Q Consensus 486 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~ 517 (605)
.-....++-.|.+|+..++|.+|++.|...+.
T Consensus 161 ~~~is~~YyvGFaylMlrRY~DAir~f~~iL~ 192 (404)
T PF10255_consen 161 ACHISTYYYVGFAYLMLRRYADAIRTFSQILL 192 (404)
T ss_pred chheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567888999999999999999999999876
No 395
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=76.56 E-value=34 Score=38.33 Aligned_cols=58 Identities=10% Similarity=-0.056 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC---------CCHHHHHHHHHHHHHccCHHHHHHHHH
Q 007401 524 TYYSNRAAAYLELGCFQQAEEDCSKTISLDK---------KNVKAYLRRGTAREALFCYNEALQDFK 581 (605)
Q Consensus 524 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p---------~~~~~~~~la~~~~~~g~~~~A~~~~~ 581 (605)
..++.++.+.+-++++.+|....+....... -.+..+|..|..+...|+.+.|+..|.
T Consensus 362 ~~~~y~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~ 428 (608)
T PF10345_consen 362 YLLFYQIWCNFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQ 428 (608)
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHh
Confidence 3456678888889999999998887776532 237789999999999999999999998
No 396
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=76.21 E-value=48 Score=34.64 Aligned_cols=61 Identities=13% Similarity=0.110 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH--HHHHHHHHHH--HHcCCHHHHHHHHHHHHh
Q 007401 491 LLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSA--TYYSNRAAAY--LELGCFQQAEEDCSKTIS 551 (605)
Q Consensus 491 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~--~~~~~la~~~--~~~~~~~~A~~~~~~al~ 551 (605)
..+..+..+++.++|..|.+.++.....-|.+. ..+..+..+| ...-+|.+|.+.+++.+.
T Consensus 133 ~~~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~ 197 (379)
T PF09670_consen 133 REWRRAKELFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLK 197 (379)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 344445566666666666666666666422222 2333333333 345556666666665443
No 397
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=75.17 E-value=6.2 Score=41.77 Aligned_cols=70 Identities=19% Similarity=0.059 Sum_probs=60.0
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc---cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhh
Q 007401 535 ELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREAL---FCYNEALQDFKHAMVLEPQNKAANLAEKRLRKLI 604 (605)
Q Consensus 535 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~---g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~ 604 (605)
.......++.+|.++++..|.....+.+++.++.+. |+.-.|+..+-.+++++|....++..+.+++..+
T Consensus 386 y~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el 458 (758)
T KOG1310|consen 386 YESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNEL 458 (758)
T ss_pred hhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHH
Confidence 344577899999999999999999999999988765 5667788999999999999999999998887665
No 398
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=74.16 E-value=17 Score=33.82 Aligned_cols=48 Identities=23% Similarity=0.073 Sum_probs=28.9
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC
Q 007401 542 AEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQN 590 (605)
Q Consensus 542 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 590 (605)
.++..++.++..| ++..+.+++.++..+|+.++|....+++..+.|.+
T Consensus 130 ~~~~a~~~l~~~P-~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP~~ 177 (193)
T PF11846_consen 130 YIEWAERLLRRRP-DPNVYQRYALALALLGDPEEARQWLARARRLYPAD 177 (193)
T ss_pred HHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcH
Confidence 3344445555555 45666666666666666666666666666666643
No 399
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=72.45 E-value=9 Score=29.64 Aligned_cols=32 Identities=22% Similarity=0.276 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Q 007401 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKL 518 (605)
Q Consensus 487 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~ 518 (605)
+.+..+...|..+-+.|+|++|+.+|.++++.
T Consensus 4 ~~Ai~~a~~Ave~D~~g~y~eA~~~Y~~aie~ 35 (76)
T cd02681 4 RDAVQFARLAVQRDQEGRYSEAVFYYKEAAQL 35 (76)
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 34667778888888999999999999998874
No 400
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=72.29 E-value=10 Score=28.62 Aligned_cols=32 Identities=28% Similarity=0.357 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Q 007401 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKL 518 (605)
Q Consensus 487 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~ 518 (605)
+.+..+...|..+-+.|+|++|+.+|.+++..
T Consensus 3 ~~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~ 34 (69)
T PF04212_consen 3 DKAIELIKKAVEADEAGNYEEALELYKEAIEY 34 (69)
T ss_dssp HHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 34566777788888888888888888888763
No 401
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=72.03 E-value=11 Score=22.72 Aligned_cols=27 Identities=19% Similarity=0.211 Sum_probs=14.0
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 007401 504 QWNKAVNYYSEAIKLNGTSATYYSNRA 530 (605)
Q Consensus 504 ~~~~A~~~~~~al~~~p~~~~~~~~la 530 (605)
+++++...|++++...|.+...|....
T Consensus 2 ~~~~~r~i~e~~l~~~~~~~~~W~~y~ 28 (33)
T smart00386 2 DIERARKIYERALEKFPKSVELWLKYA 28 (33)
T ss_pred cHHHHHHHHHHHHHHCCCChHHHHHHH
Confidence 344555555555555555555554443
No 402
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=70.86 E-value=37 Score=39.71 Aligned_cols=102 Identities=15% Similarity=0.127 Sum_probs=71.7
Q ss_pred HHHHHHHHHHHHH----C---CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHH-
Q 007401 489 SELLKEKGNAAFK----G---KQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAY- 560 (605)
Q Consensus 489 a~~~~~~g~~~~~----~---g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~- 560 (605)
-++.+..|..+.. . ..+++|+..|++.-. .|.-+-=|...|.+|..+++|++-+++|.-|++..|+.|..-
T Consensus 512 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 590 (932)
T PRK13184 512 YEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHG-GVGAPLEYLGKALVYQRLGEYNEEIKSLLLALKRYSQHPEISR 590 (932)
T ss_pred hHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcC-CCCCchHHHhHHHHHHHhhhHHHHHHHHHHHHHhcCCCCccHH
Confidence 4455555555543 2 358888888887543 567777889999999999999999999999999999887633
Q ss_pred ------HHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHH
Q 007401 561 ------LRRGTAREALFCYNEALQDFKHAMVLEPQNKAA 593 (605)
Q Consensus 561 ------~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 593 (605)
|++=.+.+.. ...|....-.++.+-|.....
T Consensus 591 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 627 (932)
T PRK13184 591 LRDHLVYRLHESLYKH--RREALVFMLLALWIAPEKISS 627 (932)
T ss_pred HHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhCcccccc
Confidence 3333333322 344666666777888876443
No 403
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=70.82 E-value=81 Score=34.14 Aligned_cols=102 Identities=15% Similarity=0.125 Sum_probs=59.1
Q ss_pred CChHHHHHHHHHHHHHHHCC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCC
Q 007401 484 GSIDASELLKEKGNAAFKGK---QWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISL-----DKK 555 (605)
Q Consensus 484 ~~~~~a~~~~~~g~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-----~p~ 555 (605)
+..+.++....+=+.++..| +|.-|+..|-..-++.|.. .-..+++.|++||.. +..
T Consensus 252 d~~e~~~lqq~lLw~lyd~ghl~~YPmALg~LadLeEi~pt~---------------~r~~~~~l~~~AI~sa~~~Y~n~ 316 (618)
T PF05053_consen 252 DSVELAQLQQDLLWLLYDMGHLARYPMALGNLADLEEIDPTP---------------GRPTPLELFNEAISSARTYYNNH 316 (618)
T ss_dssp EEHHHHHHHHHHHHHHHHTTTTTT-HHHHHHHHHHHHHS--T---------------TS--HHHHHHHHHHHHHHHCTT-
T ss_pred chHHHHHHHHHHHHHHHhcCchhhCchhhhhhHhHHhhccCC---------------CCCCHHHHHHHHHHHHHHHhcCC
Confidence 34455566666667777665 5667777777766666542 122334444444432 234
Q ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHHh------CCCCHHHHHHHHHH
Q 007401 556 NVKAYLRRGTAREALFCYNEALQDFKHAMVL------EPQNKAANLAEKRL 600 (605)
Q Consensus 556 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~~~~~ 600 (605)
+...|.++|-.|++.++|.+|+.+|..+-+. ..+|.+++..+-.+
T Consensus 317 HvYPYty~gg~~yR~~~~~eA~~~Wa~aa~Vi~~YnY~reDeEiYKEfleI 367 (618)
T PF05053_consen 317 HVYPYTYLGGYYYRHKRYREALRSWAEAADVIRKYNYSREDEEIYKEFLEI 367 (618)
T ss_dssp -SHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHTTSB--GGGHHHHHHHHHH
T ss_pred ccccceehhhHHHHHHHHHHHHHHHHHHHHHHHHcccCccHHHHHHHHHHH
Confidence 5667888888888999999999888877544 23556666555544
No 404
>PF10858 DUF2659: Protein of unknown function (DUF2659); InterPro: IPR022588 This bacterial family of proteins has no known function.
Probab=70.29 E-value=79 Score=28.39 Aligned_cols=101 Identities=13% Similarity=0.048 Sum_probs=68.7
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCC----HHHHHHHHHHHHhcC----CCCHHHHHH
Q 007401 493 KEKGNAAFKGKQWNKAVNYYSEAIKLN--GTSATYYSNRAAAYLELGC----FQQAEEDCSKTISLD----KKNVKAYLR 562 (605)
Q Consensus 493 ~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~~~----~~~A~~~~~~al~~~----p~~~~~~~~ 562 (605)
.++-..-.+.|+|.+|.+.+.+.++.. .+...+|..+++|.+-.++ ++.-.+..+....-+ |-.+-+-..
T Consensus 97 leqva~kis~~~~~eaK~LlnkIi~nk~YSeistsYaRi~wc~~vidD~nl~i~dk~kL~kyL~yfdd~~kPFWatAtI~ 176 (220)
T PF10858_consen 97 LEQVAIKISEKKYSEAKQLLNKIIENKEYSEISTSYARINWCCMVIDDQNLNIQDKEKLIKYLNYFDDEKKPFWATATII 176 (220)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHheecccccChhhHHHHHHHHhhccCCCCchHHHHHHH
Confidence 334445677899999999999998864 4557889999999987764 443333333322222 333445566
Q ss_pred HHHHHHHccCHHHHHHHHHHHHHhCCCCHHH
Q 007401 563 RGTAREALFCYNEALQDFKHAMVLEPQNKAA 593 (605)
Q Consensus 563 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 593 (605)
.+..-.+.|...+|.+.++..+.-+-.....
T Consensus 177 kaiwdik~nm~~~aeknL~~l~~Snn~Sdll 207 (220)
T PF10858_consen 177 KAIWDIKNNMKNQAEKNLKNLLASNNVSDLL 207 (220)
T ss_pred HHHHHHHcCCcHHHHHHHHHHHhhcchHHHH
Confidence 7777788999999999999988765433333
No 405
>PHA01486 nonstructural protein
Probab=69.59 E-value=4.1 Score=23.99 Aligned_cols=27 Identities=22% Similarity=0.245 Sum_probs=16.2
Q ss_pred CCCccceeecCCCCchhHHHHHHHhhhh-HHHHHH
Q 007401 1 MSKSFNIIKTNTSNPKVWVVIGVSVVGF-VVLAET 34 (605)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 34 (605)
||||+||-+ -.+..|+.|..+ .|+.+.
T Consensus 1 msksldirr-------dlrsiairlrklpassdqm 28 (32)
T PHA01486 1 MSKSLDIRR-------DLRSIAIRLRKLPASSDQM 28 (32)
T ss_pred CCcchhHHH-------HHHHHHHHHHhCCCcHHHH
Confidence 899999843 334456666555 444443
No 406
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=69.47 E-value=1.8e+02 Score=31.80 Aligned_cols=97 Identities=12% Similarity=0.155 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------------CCCCHH---HHHHHHHHHHHcCCHHHHHHHHHHH
Q 007401 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKL--------------NGTSAT---YYSNRAAAYLELGCFQQAEEDCSKT 549 (605)
Q Consensus 487 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--------------~p~~~~---~~~~la~~~~~~~~~~~A~~~~~~a 549 (605)
..++.....|+.-+..+-.+.++-.+++++.- .|.|-. +++..-..+.+.|.+..|.++++-.
T Consensus 289 qva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKll 368 (665)
T KOG2422|consen 289 QVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCRLPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLL 368 (665)
T ss_pred HHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccccCcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHH
Confidence 34455555565555556666666666666642 233322 2233344445667777777777777
Q ss_pred HhcCCC-CHHHHHHHHHHH-HHccCHHHHHHHHHHH
Q 007401 550 ISLDKK-NVKAYLRRGTAR-EALFCYNEALQDFKHA 583 (605)
Q Consensus 550 l~~~p~-~~~~~~~la~~~-~~~g~~~~A~~~~~~a 583 (605)
++++|. +|.+...+-..| .+..+|+--++.++..
T Consensus 369 lsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~ 404 (665)
T KOG2422|consen 369 LSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEP 404 (665)
T ss_pred hhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 777776 666555444443 4445555555554443
No 407
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=69.06 E-value=11 Score=22.73 Aligned_cols=27 Identities=15% Similarity=0.212 Sum_probs=15.3
Q ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 007401 538 CFQQAEEDCSKTISLDKKNVKAYLRRG 564 (605)
Q Consensus 538 ~~~~A~~~~~~al~~~p~~~~~~~~la 564 (605)
+++++.+.|+++++..|.+...|...+
T Consensus 2 ~~~~~r~i~e~~l~~~~~~~~~W~~y~ 28 (33)
T smart00386 2 DIERARKIYERALEKFPKSVELWLKYA 28 (33)
T ss_pred cHHHHHHHHHHHHHHCCCChHHHHHHH
Confidence 445555566666666665555555444
No 408
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=68.01 E-value=6.3 Score=37.65 Aligned_cols=90 Identities=17% Similarity=0.081 Sum_probs=51.9
Q ss_pred HHCCCHHHHHHHHHHHHHhC---CCC---------HHHHHHHHHHHHHcCC-HHHH-HHHHHHHHh-cC-CCC--HHHHH
Q 007401 500 FKGKQWNKAVNYYSEAIKLN---GTS---------ATYYSNRAAAYLELGC-FQQA-EEDCSKTIS-LD-KKN--VKAYL 561 (605)
Q Consensus 500 ~~~g~~~~A~~~~~~al~~~---p~~---------~~~~~~la~~~~~~~~-~~~A-~~~~~~al~-~~-p~~--~~~~~ 561 (605)
+..|+|+.|++..+-+|+.+ |+. ++-...-+...+..|+ ++-. ...+..... .+ |+. ++.|-
T Consensus 94 ~D~Gd~~~AL~ia~yAI~~~l~~Pd~f~R~~~t~vaeev~~~A~~~~~ag~~~e~~~~~~~~~l~~~~dmpd~vrAKl~K 173 (230)
T PHA02537 94 FDIGDFDGALEIAEYALEHGLTMPDQFRRTLANFVAEEVANAALKAASAGESVEPYFLRVFLDLTTEWDMPDEVRAKLYK 173 (230)
T ss_pred eeccCHHHHHHHHHHHHHcCCCCCccccCCchHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHhcCCCChHHHHHHHH
Confidence 67889999999999999865 332 1122223333344444 1111 111222111 11 333 34555
Q ss_pred HHHHHHH---------HccCHHHHHHHHHHHHHhCCC
Q 007401 562 RRGTARE---------ALFCYNEALQDFKHAMVLEPQ 589 (605)
Q Consensus 562 ~la~~~~---------~~g~~~~A~~~~~~al~~~p~ 589 (605)
..|..+. ..++..+|+..+++|++++|+
T Consensus 174 ~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k 210 (230)
T PHA02537 174 AAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDK 210 (230)
T ss_pred HHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCC
Confidence 5666663 456788999999999999975
No 409
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=67.20 E-value=12 Score=29.01 Aligned_cols=31 Identities=16% Similarity=0.204 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q 007401 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIK 517 (605)
Q Consensus 487 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~ 517 (605)
..+..+...|..+-+.|+|++|+.+|.++|.
T Consensus 4 ~~a~~l~~~Ave~D~~g~y~eAl~~Y~~aie 34 (77)
T cd02683 4 LAAKEVLKRAVELDQEGRFQEALVCYQEGID 34 (77)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 3456677778888888888888888887775
No 410
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=66.35 E-value=45 Score=39.66 Aligned_cols=105 Identities=16% Similarity=0.109 Sum_probs=85.0
Q ss_pred CCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 007401 482 TNGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKL--------NGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLD 553 (605)
Q Consensus 482 ~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 553 (605)
-.+.++....+.+++...+..++...|+..+.++..+ .|.-+....+++..+...++++.|+++.+.|.+..
T Consensus 1008 g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~ 1087 (1236)
T KOG1839|consen 1008 GKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKN 1087 (1236)
T ss_pred cCCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 3567888999999999999999999999999998765 45666777899999999999999999999999864
Q ss_pred C--------CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q 007401 554 K--------KNVKAYLRRGTAREALFCYNEALQDFKHAMVL 586 (605)
Q Consensus 554 p--------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 586 (605)
. .+...+..+++.+..+++++.|+...+..+.+
T Consensus 1088 ~~v~g~~~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t~~i 1128 (1236)
T KOG1839|consen 1088 KKVLGPKELETALSYHALARLFESMKDFRNALEHEKVTYGI 1128 (1236)
T ss_pred hhhcCccchhhhhHHHHHHHHHhhhHHHHHHHHHHhhHHHH
Confidence 2 23456777888888888888877776666544
No 411
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=66.17 E-value=63 Score=29.45 Aligned_cols=75 Identities=9% Similarity=0.019 Sum_probs=57.9
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHH-HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 007401 494 EKGNAAFKGKQWNKAVNYYSEAI-KLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREA 569 (605)
Q Consensus 494 ~~g~~~~~~g~~~~A~~~~~~al-~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 569 (605)
.-+..+...|.|++-....+..- ..+|--..+...+|...++.|+|.+|.+.|.+... |.+-|....+++.++..
T Consensus 137 raa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~-Da~aprnirqRAq~mld 212 (221)
T COG4649 137 RAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN-DAQAPRNIRQRAQIMLD 212 (221)
T ss_pred HHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc-cccCcHHHHHHHHHHHH
Confidence 34777889999998777666542 23455577788899999999999999999998766 76777777788877654
No 412
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=66.07 E-value=62 Score=34.57 Aligned_cols=82 Identities=17% Similarity=0.071 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 007401 488 ASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAR 567 (605)
Q Consensus 488 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 567 (605)
....|.++|...+.+|+++-|.++|+++-. +..+...|...|+-++-.+..+.|......| ..-.++
T Consensus 346 ~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d--------~~~L~lLy~~~g~~~~L~kl~~~a~~~~~~n-----~af~~~ 412 (443)
T PF04053_consen 346 DPEKWKQLGDEALRQGNIELAEECYQKAKD--------FSGLLLLYSSTGDREKLSKLAKIAEERGDIN-----IAFQAA 412 (443)
T ss_dssp THHHHHHHHHHHHHTTBHHHHHHHHHHCT---------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-HH-----HHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC--------ccccHHHHHHhCCHHHHHHHHHHHHHccCHH-----HHHHHH
Confidence 355899999999999999999999998643 3466666777888766555555555443322 222345
Q ss_pred HHccCHHHHHHHHHH
Q 007401 568 EALFCYNEALQDFKH 582 (605)
Q Consensus 568 ~~~g~~~~A~~~~~~ 582 (605)
+.+|+.++.++.+.+
T Consensus 413 ~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 413 LLLGDVEECVDLLIE 427 (443)
T ss_dssp HHHT-HHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHH
Confidence 666777777666554
No 413
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=65.18 E-value=17 Score=27.94 Aligned_cols=40 Identities=15% Similarity=0.076 Sum_probs=20.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH-------hcCCCCHHHHHHHHH
Q 007401 526 YSNRAAAYLELGCFQQAEEDCSKTI-------SLDKKNVKAYLRRGT 565 (605)
Q Consensus 526 ~~~la~~~~~~~~~~~A~~~~~~al-------~~~p~~~~~~~~la~ 565 (605)
+..+|.-+-+.|++.+|+.+|+.++ +..|+++.-...+..
T Consensus 9 ~a~~AVe~D~~gr~~eAi~~Y~~aIe~L~q~~~~~pD~~~k~~yr~k 55 (75)
T cd02682 9 YAINAVKAEKEGNAEDAITNYKKAIEVLSQIVKNYPDSPTRLIYEQM 55 (75)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHH
Confidence 3444444555666665555555544 445666654443333
No 414
>PF13226 DUF4034: Domain of unknown function (DUF4034)
Probab=64.69 E-value=86 Score=31.04 Aligned_cols=28 Identities=21% Similarity=0.336 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 007401 573 YNEALQDFKHAMVLEPQNKAANLAEKRL 600 (605)
Q Consensus 573 ~~~A~~~~~~al~~~p~~~~~~~~~~~~ 600 (605)
.++|...+.+++.++|....+...+-.+
T Consensus 115 ~d~A~~~ll~A~~l~pr~~~A~~~m~~~ 142 (277)
T PF13226_consen 115 CDQAVAALLKAIELSPRPVAAAIGMINI 142 (277)
T ss_pred HHHHHHHHHHHHhcCCCchHHHHHHHHH
Confidence 3445555555666666555554444433
No 415
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=64.65 E-value=55 Score=33.02 Aligned_cols=99 Identities=14% Similarity=0.051 Sum_probs=72.9
Q ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHccCHHHHHHH
Q 007401 502 GKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISL--DKKNVKAYLRRGTAREALFCYNEALQD 579 (605)
Q Consensus 502 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~ 579 (605)
.-+|.+-..+|+....+.|+ +-+-.|++.+..+..-...++...+..... -..+...+-.+|..+.++|+.++|-+.
T Consensus 309 dtDW~~I~aLYdaL~~~apS-PvV~LNRAVAla~~~Gp~agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~a 387 (415)
T COG4941 309 DTDWPAIDALYDALEQAAPS-PVVTLNRAVALAMREGPAAGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAA 387 (415)
T ss_pred CCChHHHHHHHHHHHHhCCC-CeEeehHHHHHHHhhhHHhHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHH
Confidence 33666666677766666654 566678888887777777777777665544 123445777799999999999999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHH
Q 007401 580 FKHAMVLEPQNKAANLAEKRLR 601 (605)
Q Consensus 580 ~~~al~~~p~~~~~~~~~~~~~ 601 (605)
|++++.+.++..+..+...+.-
T Consensus 388 ydrAi~La~~~aer~~l~~r~~ 409 (415)
T COG4941 388 YDRAIALARNAAERAFLRQRLD 409 (415)
T ss_pred HHHHHHhcCChHHHHHHHHHHH
Confidence 9999999998877766665543
No 416
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=62.06 E-value=41 Score=27.94 Aligned_cols=52 Identities=21% Similarity=0.243 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 007401 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGC 538 (605)
Q Consensus 487 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~ 538 (605)
+.++.....|...+..|||++|.+...++-+..++..-.|..-+++-.++||
T Consensus 57 ~ka~~al~~Gl~al~~G~~~~A~k~~~~a~~~~~~~~l~~L~AA~AA~~~gd 108 (108)
T PF07219_consen 57 RKAQRALSRGLIALAEGDWQRAEKLLAKAAKLSDNPLLNYLLAARAAQAQGD 108 (108)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC
Confidence 4566667778888888888888888888866544444444445555555543
No 417
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=61.92 E-value=99 Score=34.01 Aligned_cols=59 Identities=15% Similarity=0.040 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 007401 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCS 547 (605)
Q Consensus 487 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~ 547 (605)
..+..+...+..+-..+.-++|-++|++.+..+|+ ..++..+.-+++.|-...|...++
T Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 98 (578)
T PRK15490 40 LTSLAMLKKAEFLHDVNETERAYALYETLIAQNND--EARYEYARRLYNTGLAKDAQLILK 98 (578)
T ss_pred hhHHHHHHHhhhhhhhhhhHhHHHHHHHHHHhCCc--chHHHHHHHHHhhhhhhHHHHHHH
Confidence 34555666666666777777777777777776666 556666666666666666655554
No 418
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=61.65 E-value=38 Score=28.80 Aligned_cols=101 Identities=18% Similarity=0.126 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHcCCHHHHHHHHHHH----H
Q 007401 490 ELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTS---------------ATYYSNRAAAYLELGCFQQAEEDCSKT----I 550 (605)
Q Consensus 490 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---------------~~~~~~la~~~~~~~~~~~A~~~~~~a----l 550 (605)
+.+..+|+..++.+++-.++-.|++|+.+..+- .-..-|+|..+...|+-+-.+++++-| +
T Consensus 2 e~htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlASE~Vl 81 (140)
T PF10952_consen 2 EKHTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLASEKVL 81 (140)
T ss_pred hhHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHHHHHH
Confidence 356788999999999999999999998753211 223468899999999988888888665 4
Q ss_pred hcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHH
Q 007401 551 SLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAANLA 596 (605)
Q Consensus 551 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 596 (605)
.+-|+.+..-.. .-...+|.-..|+-.|- +..|+ +.+...
T Consensus 82 tLiPQCp~~~C~--afi~sLGCCk~ALl~F~---KRHPN-P~iA~~ 121 (140)
T PF10952_consen 82 TLIPQCPNTECE--AFIDSLGCCKKALLDFM---KRHPN-PEIARL 121 (140)
T ss_pred HhccCCCCcchH--HHHHhhhccHHHHHHHH---HhCCC-HHHHHH
Confidence 455654331110 00224455556655543 44564 443333
No 419
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=61.49 E-value=1.3e+02 Score=27.62 Aligned_cols=135 Identities=16% Similarity=0.019 Sum_probs=83.6
Q ss_pred HHhHHHHHHhHHHHHHhhhccCCCCCCCCCChHHHHHHHHHHHHHHH-----CCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 007401 455 LLDTVLDLYDSLQEQVNIASNLVPLPDTNGSIDASELLKEKGNAAFK-----GKQWNKAVNYYSEAIKLNGTSATYYSNR 529 (605)
Q Consensus 455 ll~~a~~l~~~~~e~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~~-----~g~~~~A~~~~~~al~~~p~~~~~~~~l 529 (605)
|-.....+...++++........ +. -..+...+.+|+.++. .++...|++.|+.+.. -+.+.+..++
T Consensus 40 LgdYlEgi~knF~~A~kv~K~nC---de---n~y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~--~n~~~aC~~~ 111 (248)
T KOG4014|consen 40 LGDYLEGIQKNFQAAVKVFKKNC---DE---NSYPKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACD--ANIPQACRYL 111 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcc---cc---cCCcHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhc--cCCHHHHhhh
Confidence 33344444455555555553322 12 2335566777776653 5589999999999987 4667788888
Q ss_pred HHHHHHcC-------CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc------------------------cCHHHHHH
Q 007401 530 AAAYLELG-------CFQQAEEDCSKTISLDKKNVKAYLRRGTAREAL------------------------FCYNEALQ 578 (605)
Q Consensus 530 a~~~~~~~-------~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~------------------------g~~~~A~~ 578 (605)
|.++.... +..+|.+++.++-.++ +..+-++|.-.|..- .+.++|.+
T Consensus 112 gLl~~~g~~~r~~dpd~~Ka~~y~traCdl~--~~~aCf~LS~m~~~g~~k~~t~ap~~g~p~~~~~~~~~~kDMdka~q 189 (248)
T KOG4014|consen 112 GLLHWNGEKDRKADPDSEKAERYMTRACDLE--DGEACFLLSTMYMGGKEKFKTNAPGEGKPLDRAELGSLSKDMDKALQ 189 (248)
T ss_pred hhhhccCcCCccCCCCcHHHHHHHHHhccCC--CchHHHHHHHHHhccchhhcccCCCCCCCcchhhhhhhhHhHHHHHH
Confidence 88876432 3788999999987664 445555554444333 56777877
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHH
Q 007401 579 DFKHAMVLEPQNKAANLAEKRLR 601 (605)
Q Consensus 579 ~~~~al~~~p~~~~~~~~~~~~~ 601 (605)
.--++-+++ ++++-.++.+.+
T Consensus 190 fa~kACel~--~~~aCAN~SrMy 210 (248)
T KOG4014|consen 190 FAIKACELD--IPQACANVSRMY 210 (248)
T ss_pred HHHHHHhcC--ChHHHhhHHHHH
Confidence 777776664 455544444443
No 420
>PF12854 PPR_1: PPR repeat
Probab=61.48 E-value=19 Score=22.74 Aligned_cols=27 Identities=19% Similarity=0.049 Sum_probs=20.7
Q ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHH
Q 007401 556 NVKAYLRRGTAREALFCYNEALQDFKH 582 (605)
Q Consensus 556 ~~~~~~~la~~~~~~g~~~~A~~~~~~ 582 (605)
|...|..+-..|.+.|+.++|.+.|++
T Consensus 6 d~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 6 DVVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred cHhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 456777778888888888888887764
No 421
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=61.40 E-value=16 Score=24.92 Aligned_cols=25 Identities=32% Similarity=0.424 Sum_probs=22.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHh
Q 007401 527 SNRAAAYLELGCFQQAEEDCSKTIS 551 (605)
Q Consensus 527 ~~la~~~~~~~~~~~A~~~~~~al~ 551 (605)
+++|..|+.+|+++.|.+.++..+.
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH
Confidence 5789999999999999999999885
No 422
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=61.34 E-value=1.4e+02 Score=34.29 Aligned_cols=88 Identities=15% Similarity=-0.019 Sum_probs=69.4
Q ss_pred ChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc----CCC
Q 007401 485 SIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTS-----ATYYSNRAAAYLELGCFQQAEEDCSKTISL----DKK 555 (605)
Q Consensus 485 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~la~~~~~~~~~~~A~~~~~~al~~----~p~ 555 (605)
....++..-..|.+....+++++|++..+.++..-|.+ ..++...|.+++-.|++.+|....+++.++ +..
T Consensus 454 ~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~ 533 (894)
T COG2909 454 GDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVY 533 (894)
T ss_pred hhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccH
Confidence 33456666677888999999999999999999987765 457788999999999999999999988877 332
Q ss_pred CHH--HHHHHHHHHHHccC
Q 007401 556 NVK--AYLRRGTAREALFC 572 (605)
Q Consensus 556 ~~~--~~~~la~~~~~~g~ 572 (605)
... +.+..+.++..+|+
T Consensus 534 ~l~~~~~~~~s~il~~qGq 552 (894)
T COG2909 534 HLALWSLLQQSEILEAQGQ 552 (894)
T ss_pred HHHHHHHHHHHHHHHHhhH
Confidence 222 44556888888994
No 423
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=60.89 E-value=50 Score=28.65 Aligned_cols=48 Identities=21% Similarity=0.227 Sum_probs=17.4
Q ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 007401 502 GKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKT 549 (605)
Q Consensus 502 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a 549 (605)
+|+-++--+.++...+....++..+..+|.+|-++|+..++-+.+++|
T Consensus 99 ~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~A 146 (161)
T PF09205_consen 99 QGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEA 146 (161)
T ss_dssp TT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHH
Confidence 333333333344443333334444444444444444444444444443
No 424
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=60.78 E-value=2.3e+02 Score=30.95 Aligned_cols=112 Identities=13% Similarity=-0.059 Sum_probs=82.1
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH---HHHHHHhcCCCC----HHHHHH
Q 007401 490 ELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEE---DCSKTISLDKKN----VKAYLR 562 (605)
Q Consensus 490 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~---~~~~al~~~p~~----~~~~~~ 562 (605)
......+..--..|++..|...|++...-.|....+-.........+++.+.+.. .+.... -...+ ...+..
T Consensus 367 ~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~-~~~~~~~i~~~l~~~ 445 (577)
T KOG1258|consen 367 IIHLLEARFEESNGNFDDAKVILQRIESEYPGLVEVVLRKINWERRKGNLEDANYKNELYSSIY-EGKENNGILEKLYVK 445 (577)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhc-ccccCcchhHHHHHH
Confidence 3444456666778999999999999998889998888888888888998888774 222222 11222 334555
Q ss_pred HHHH-HHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 007401 563 RGTA-REALFCYNEALQDFKHAMVLEPQNKAANLAEKRLRK 602 (605)
Q Consensus 563 la~~-~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 602 (605)
.+.. +.-.++.+.|...+.++++..|.+...+..+..+..
T Consensus 446 ~~r~~~~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~ 486 (577)
T KOG1258|consen 446 FARLRYKIREDADLARIILLEANDILPDCKVLYLELIRFEL 486 (577)
T ss_pred HHHHHHHHhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHH
Confidence 5554 556688899999999999999999888777766543
No 425
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=60.74 E-value=17 Score=28.09 Aligned_cols=32 Identities=19% Similarity=0.315 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Q 007401 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKL 518 (605)
Q Consensus 487 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~ 518 (605)
+.+..+...|...-..|+|++|+.+|..+++.
T Consensus 4 ~kai~Lv~~A~~eD~~gny~eA~~lY~~ale~ 35 (75)
T cd02680 4 ERAHFLVTQAFDEDEKGNAEEAIELYTEAVEL 35 (75)
T ss_pred HHHHHHHHHHHHhhHhhhHHHHHHHHHHHHHH
Confidence 34566677777777788888888888888774
No 426
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=60.07 E-value=22 Score=27.36 Aligned_cols=31 Identities=23% Similarity=0.318 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q 007401 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIK 517 (605)
Q Consensus 487 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~ 517 (605)
..+..+...|..+-..|+|++|+.+|.++++
T Consensus 6 ~~A~~li~~Av~~d~~g~~~eAl~~Y~~a~e 36 (77)
T smart00745 6 SKAKELISKALKADEAGDYEEALELYKKAIE 36 (77)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3455566677777777888888887777765
No 427
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=59.64 E-value=22 Score=27.34 Aligned_cols=32 Identities=16% Similarity=0.235 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Q 007401 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKL 518 (605)
Q Consensus 487 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~ 518 (605)
+.+..+...|...-..|+|++|+.+|.+++..
T Consensus 4 ~~A~~l~~~Av~~D~~g~y~eA~~~Y~~aie~ 35 (75)
T cd02678 4 QKAIELVKKAIEEDNAGNYEEALRLYQHALEY 35 (75)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 34566777788888888888888888887763
No 428
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=58.80 E-value=19 Score=37.26 Aligned_cols=59 Identities=15% Similarity=0.088 Sum_probs=53.2
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 007401 492 LKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTI 550 (605)
Q Consensus 492 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al 550 (605)
--.+..+|++.++.+.|+..-.+.|.++|.+..-+...|.|+..+.+|.+|.+.+.-+.
T Consensus 231 etklv~CYL~~rkpdlALnh~hrsI~lnP~~frnHLrqAavfR~LeRy~eAarSamia~ 289 (569)
T PF15015_consen 231 ETKLVTCYLRMRKPDLALNHSHRSINLNPSYFRNHLRQAAVFRRLERYSEAARSAMIAD 289 (569)
T ss_pred HHHHHHhhhhcCCCchHHHHHhhhhhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34588999999999999999999999999999999999999999999999988766554
No 429
>COG5536 BET4 Protein prenyltransferase, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=58.33 E-value=36 Score=33.35 Aligned_cols=116 Identities=12% Similarity=0.111 Sum_probs=83.0
Q ss_pred hHHHHHHHHHHHHH--HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH------HHcCCHHHHHHHHHHHHhcCCCCH
Q 007401 486 IDASELLKEKGNAA--FKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAY------LELGCFQQAEEDCSKTISLDKKNV 557 (605)
Q Consensus 486 ~~~a~~~~~~g~~~--~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~------~~~~~~~~A~~~~~~al~~~p~~~ 557 (605)
|..-+.|.-.-.++ +...++..-+..-++.+..++.|...|..+-.+. ....++.+-.++-..+|..|+.|.
T Consensus 105 PK~YqiW~HR~~~Le~~p~~~~~rEl~itkklld~DsrNyH~W~YR~~vl~~ie~~~N~S~~k~e~eytt~~I~tdi~N~ 184 (328)
T COG5536 105 PKNYQIWHHRQWMLELFPKPSWGRELFITKKLLDSDSRNYHVWSYRRWVLRTIEDLFNFSDLKHELEYTTSLIETDIYNN 184 (328)
T ss_pred CchhhhhHHHHHHHHhCCCcccchhHHHHHHHhcccccccceeeeEeeeeecchhhccchhHHHHHHhHHHHHhhCCCCh
Confidence 33344444433333 4447788888999999999999999888777666 444456677888888999999999
Q ss_pred HHHHHH---HHHHHHccC------HHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 007401 558 KAYLRR---GTAREALFC------YNEALQDFKHAMVLEPQNKAANLAEKRLR 601 (605)
Q Consensus 558 ~~~~~l---a~~~~~~g~------~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 601 (605)
.+|.++ -...+..|+ +++-+++...++-.+|+|...+.+...+.
T Consensus 185 SaW~~r~~~~~~~~~~~~visqk~l~~eL~~i~~~if~~p~~~S~w~y~r~~~ 237 (328)
T COG5536 185 SAWHHRYIWIERRFNRGDVISQKYLEKELEYIFDKIFTDPDNQSVWGYLRGVS 237 (328)
T ss_pred HHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHhhhhcCccccchhhHHHHHh
Confidence 999887 444444554 55667777777888899988877766543
No 430
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=57.99 E-value=1.4e+02 Score=31.55 Aligned_cols=118 Identities=8% Similarity=-0.079 Sum_probs=78.2
Q ss_pred CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHH
Q 007401 483 NGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLR 562 (605)
Q Consensus 483 ~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 562 (605)
.++|.+...|+++-..+-.++.+++-.+.|++...-.|-.+.+|...-.--+..++|......|.+++...-+ ...|..
T Consensus 36 kdNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l~-ldLW~l 114 (660)
T COG5107 36 KDNPTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSLN-LDLWML 114 (660)
T ss_pred hcCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhcc-HhHHHH
Confidence 4578889999999999999999999999999999888887777766554445578899999999998875432 444433
Q ss_pred HHHHHHHcc-----C----HHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 007401 563 RGTAREALF-----C----YNEALQDFKHAMVLEPQNKAANLAEKRLR 601 (605)
Q Consensus 563 la~~~~~~g-----~----~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 601 (605)
.-..-.+.+ + .-+|-+..-.+.-.+|.....|...+..+
T Consensus 115 Yl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fl 162 (660)
T COG5107 115 YLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFL 162 (660)
T ss_pred HHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHH
Confidence 222111111 1 22333333333345666666666555443
No 431
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=57.29 E-value=45 Score=36.26 Aligned_cols=77 Identities=17% Similarity=0.063 Sum_probs=48.2
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCH
Q 007401 494 EKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREALFCY 573 (605)
Q Consensus 494 ~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 573 (605)
..+..+.++|-.++|+ ++.++. . .+=.+.+++|+++.|.+.. .+.++..-|-.||.+....+++
T Consensus 619 ~va~Fle~~g~~e~AL-------~~s~D~-d---~rFelal~lgrl~iA~~la-----~e~~s~~Kw~~Lg~~al~~~~l 682 (794)
T KOG0276|consen 619 KVAHFLESQGMKEQAL-------ELSTDP-D---QRFELALKLGRLDIAFDLA-----VEANSEVKWRQLGDAALSAGEL 682 (794)
T ss_pred hHHhHhhhccchHhhh-------hcCCCh-h---hhhhhhhhcCcHHHHHHHH-----HhhcchHHHHHHHHHHhhcccc
Confidence 3444555555555544 444332 1 2334456778887776543 3345677788888888888888
Q ss_pred HHHHHHHHHHHHh
Q 007401 574 NEALQDFKHAMVL 586 (605)
Q Consensus 574 ~~A~~~~~~al~~ 586 (605)
..|.+||.++..+
T Consensus 683 ~lA~EC~~~a~d~ 695 (794)
T KOG0276|consen 683 PLASECFLRARDL 695 (794)
T ss_pred hhHHHHHHhhcch
Confidence 8888888877544
No 432
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=55.24 E-value=29 Score=26.56 Aligned_cols=31 Identities=16% Similarity=0.289 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Q 007401 488 ASELLKEKGNAAFKGKQWNKAVNYYSEAIKL 518 (605)
Q Consensus 488 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~ 518 (605)
.+..+...|...-..|+|++|+.+|..+++.
T Consensus 5 ~a~~l~~~Av~~D~~g~~~~Al~~Y~~a~e~ 35 (75)
T cd02656 5 QAKELIKQAVKEDEDGNYEEALELYKEALDY 35 (75)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3555666777777788888888888887763
No 433
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=55.02 E-value=23 Score=27.27 Aligned_cols=33 Identities=21% Similarity=0.228 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 007401 505 WNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISL 552 (605)
Q Consensus 505 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 552 (605)
.++|+...++++..+ ..|+|++|+..|.++++.
T Consensus 3 l~kai~Lv~~A~~eD---------------~~gny~eA~~lY~~ale~ 35 (75)
T cd02680 3 LERAHFLVTQAFDED---------------EKGNAEEAIELYTEAVEL 35 (75)
T ss_pred HHHHHHHHHHHHHhh---------------HhhhHHHHHHHHHHHHHH
Confidence 456666666665543 568899999999888875
No 434
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=54.92 E-value=1.3e+02 Score=29.81 Aligned_cols=104 Identities=9% Similarity=0.005 Sum_probs=68.9
Q ss_pred CChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC---CHH---HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH
Q 007401 484 GSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGT---SAT---YYSNRAAAYLELGCFQQAEEDCSKTISLDKKNV 557 (605)
Q Consensus 484 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~---~~~---~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~ 557 (605)
...+.+++|.++|..|.+.++-+.+.+...+.+...-. ..+ .-..+|.+|-.+.-..+.++..+-.++..-++-
T Consensus 110 gE~e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWe 189 (412)
T COG5187 110 GETEGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWE 189 (412)
T ss_pred cchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHH
Confidence 35677899999999999999999999998888764311 122 234566666555556666666666666654321
Q ss_pred H---HHHHHHHHHHHccCHHHHHHHHHHHHHhC
Q 007401 558 K---AYLRRGTAREALFCYNEALQDFKHAMVLE 587 (605)
Q Consensus 558 ~---~~~~la~~~~~~g~~~~A~~~~~~al~~~ 587 (605)
. .--+.|.-.....++.+|...+-..+.-.
T Consensus 190 RrNRyK~Y~Gi~~m~~RnFkeAa~Ll~d~l~tF 222 (412)
T COG5187 190 RRNRYKVYKGIFKMMRRNFKEAAILLSDILPTF 222 (412)
T ss_pred hhhhHHHHHHHHHHHHHhhHHHHHHHHHHhccc
Confidence 1 22234555566677888888777666443
No 435
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=54.84 E-value=30 Score=26.62 Aligned_cols=32 Identities=13% Similarity=0.109 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Q 007401 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKL 518 (605)
Q Consensus 487 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~ 518 (605)
+.+..+...|...-..|+|++|+.+|.++++.
T Consensus 4 ~~Ai~lv~~Av~~D~~g~y~eA~~lY~~ale~ 35 (75)
T cd02684 4 EKAIALVVQAVKKDQRGDAAAALSLYCSALQY 35 (75)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 34566667777777788888888888777763
No 436
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=54.55 E-value=68 Score=34.27 Aligned_cols=29 Identities=21% Similarity=0.208 Sum_probs=21.4
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 007401 521 TSATYYSNRAAAYLELGCFQQAEEDCSKT 549 (605)
Q Consensus 521 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a 549 (605)
++...|..+|...+..|+++-|.++|+++
T Consensus 345 ~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~ 373 (443)
T PF04053_consen 345 DDPEKWKQLGDEALRQGNIELAEECYQKA 373 (443)
T ss_dssp STHHHHHHHHHHHHHTTBHHHHHHHHHHC
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHhh
Confidence 45677777777777777777777777664
No 437
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=53.59 E-value=2.3e+02 Score=27.81 Aligned_cols=95 Identities=12% Similarity=-0.024 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHHhc------CC
Q 007401 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKL-----NGTSATYYSNRAAAYLELGCFQ-QAEEDCSKTISL------DK 554 (605)
Q Consensus 487 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~~la~~~~~~~~~~-~A~~~~~~al~~------~p 554 (605)
+..+.++.=+..+++.+++.-|.+...-.++. .+.+.....++..++.....-+ +-.+..+++++- .-
T Consensus 8 eAidLL~~Ga~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p~r~~fi~~ai~WS~~~~~~~ 87 (260)
T PF04190_consen 8 EAIDLLYSGALILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEEPERKKFIKAAIKWSKFGSYKF 87 (260)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-TTHHHHHHHHHHHHHTSS-TT
T ss_pred HHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHccCCCCC
Confidence 34567777788888888888877765555543 3445555667777776664321 223333333332 23
Q ss_pred CCHHHHHHHHHHHHHccCHHHHHHHHH
Q 007401 555 KNVKAYLRRGTAREALFCYNEALQDFK 581 (605)
Q Consensus 555 ~~~~~~~~la~~~~~~g~~~~A~~~~~ 581 (605)
.++..+..+|..|.+.+++.+|..+|-
T Consensus 88 Gdp~LH~~~a~~~~~e~~~~~A~~Hfl 114 (260)
T PF04190_consen 88 GDPELHHLLAEKLWKEGNYYEAERHFL 114 (260)
T ss_dssp --HHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhccHHHHHHHHH
Confidence 578899999999999999999988774
No 438
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=52.96 E-value=44 Score=31.03 Aligned_cols=49 Identities=14% Similarity=0.127 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 007401 505 WNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDK 554 (605)
Q Consensus 505 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p 554 (605)
.+..++..++.++..| ++..+.+++.++...|+.++|.+..+++..+.|
T Consensus 127 l~~~~~~a~~~l~~~P-~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 127 LEAYIEWAERLLRRRP-DPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred HHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 3445566666777777 578899999999999999999999999999999
No 439
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=52.85 E-value=86 Score=27.07 Aligned_cols=79 Identities=18% Similarity=0.144 Sum_probs=46.3
Q ss_pred HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH---------HHhcCCCCHHHHHHHHHHHHHc
Q 007401 500 FKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSK---------TISLDKKNVKAYLRRGTAREAL 570 (605)
Q Consensus 500 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~---------al~~~p~~~~~~~~la~~~~~~ 570 (605)
.+.+.+...+.+++..+..++.+...+..+..+|.+. +-.+.++.++. ++++..+ ...|-....+|.+.
T Consensus 18 ~~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~-~~~~ll~~l~~~~~~yd~~~~~~~c~~-~~l~~~~~~l~~k~ 95 (140)
T smart00299 18 EKRNLLEELIPYLESALKLNSENPALQTKLIELYAKY-DPQKEIERLDNKSNHYDIEKVGKLCEK-AKLYEEAVELYKKD 95 (140)
T ss_pred HhCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHHH-CHHHHHHHHHhccccCCHHHHHHHHHH-cCcHHHHHHHHHhh
Confidence 4456788888888888888777777777787777654 33444555542 1111111 11233344455566
Q ss_pred cCHHHHHHHH
Q 007401 571 FCYNEALQDF 580 (605)
Q Consensus 571 g~~~~A~~~~ 580 (605)
|++++|++.+
T Consensus 96 ~~~~~Al~~~ 105 (140)
T smart00299 96 GNFKDAIVTL 105 (140)
T ss_pred cCHHHHHHHH
Confidence 6666665543
No 440
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=52.81 E-value=90 Score=27.13 Aligned_cols=61 Identities=18% Similarity=0.074 Sum_probs=39.7
Q ss_pred HHHHHHHH-HHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q 007401 526 YSNRAAAY-LELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVL 586 (605)
Q Consensus 526 ~~~la~~~-~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 586 (605)
|..+|.-+ ...+.-++-.+.++...+.+..++..++.+|.+|.+.|+..+|.+.+.+|-+.
T Consensus 88 ~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACek 149 (161)
T PF09205_consen 88 YVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEK 149 (161)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 33444333 34555555555666666666678999999999999999999999999998764
No 441
>PF01239 PPTA: Protein prenyltransferase alpha subunit repeat; InterPro: IPR002088 Protein prenylation is the posttranslational attachment of either a farnesyl group or a geranylgeranyl group via a thioether linkage (-C-S-C-) to a cysteine at or near the carboxyl terminus of the protein. Farnesyl and geranylgeranyl groups are polyisoprenes, unsaturated hydrocarbons with a multiple of five carbons; the chain is 15 carbons long in the farnesyl moiety and 20 carbons long in the geranylgeranyl moiety. There are three different protein prenyltransferases in humans: farnesyltransferase (FT) and geranylgeranyltransferase 1 (GGT1) share the same motif (the CaaX box) around the cysteine in their substrates, and are thus called CaaX prenyltransferases, whereas geranylgeranyltransferase 2 (GGT2, also called Rab geranylgeranyltransferase) recognises a different motif and is thus called a non-CaaX prenyltransferase. Protein prenyltransferases are currently known only in eukaryotes, but they are widespread, being found in vertebrates, insects, nematodes, plants, fungi and protozoa, including several parasites. Each protein consists of two subunits, alpha and beta; the alpha subunit of FT and GGT1 is encoded by the same gene, FNTA. The alpha subunit is thought to participate in a stable complex with the isoprenyl substrate; the beta subunit binds the peptide substrate. In the alpha subunits of both types of protein prenyltransferases, seven tetratricopeptide repeats are formed by pairs of helices that are stabilised by conserved intercalating residues. The alpha subunits of GGT2 in mammals and plants also have an immunoglobulin-like domain between the fifth and sixth tetratricopeptide repeat, as well as leucine-rich repeats at the carboxyl terminus. The functions of these additional domains in GGT2 are as yet undefined, but they are apparently not directly involved in the interaction with substrates and Rab escort proteins. The tetratricopeptide repeats of the alpha subunit form a right-handed superhelix, which embraces the (alpha-alpha)6 barrel of the beta subunit []. ; GO: 0008318 protein prenyltransferase activity, 0018342 protein prenylation; PDB: 1S63_A 1LD7_A 1LD8_A 2H6G_A 1SA4_A 1MZC_A 1TN6_A 2F0Y_A 2H6H_A 2H6F_A ....
Probab=51.81 E-value=44 Score=20.40 Aligned_cols=21 Identities=29% Similarity=0.189 Sum_probs=8.8
Q ss_pred HHHHHHhcCCCCHHHHHHHHH
Q 007401 545 DCSKTISLDKKNVKAYLRRGT 565 (605)
Q Consensus 545 ~~~~al~~~p~~~~~~~~la~ 565 (605)
...+++..+|.|..+|..+-.
T Consensus 5 ~~~~~l~~~pknys~W~yR~~ 25 (31)
T PF01239_consen 5 FTKKALEKDPKNYSAWNYRRW 25 (31)
T ss_dssp HHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHCcccccHHHHHHH
Confidence 334444444444444444333
No 442
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=51.50 E-value=1e+02 Score=26.49 Aligned_cols=60 Identities=13% Similarity=0.124 Sum_probs=39.9
Q ss_pred ChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 007401 485 SIDASELLKEKGNAAFKGKQWNKAVNYYSEAIK--LNGTSATYYSNRAAAYLELGCFQQAEEDCSKTI 550 (605)
Q Consensus 485 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al 550 (605)
.++....|...+.... ++.+.|+.+.. +.-..+..|..-|..+...+++++|.+.|+++|
T Consensus 65 D~RylkiWi~ya~~~~------~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~Gi 126 (126)
T PF08311_consen 65 DERYLKIWIKYADLSS------DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQLGI 126 (126)
T ss_dssp -HHHHHHHHHHHTTBS------HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcc------CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHhhC
Confidence 4455666666554322 66777666654 345677888888888888888888888887764
No 443
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=51.45 E-value=1.5e+02 Score=29.94 Aligned_cols=87 Identities=18% Similarity=0.136 Sum_probs=61.3
Q ss_pred HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-----------------------CC
Q 007401 500 FKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDK-----------------------KN 556 (605)
Q Consensus 500 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p-----------------------~~ 556 (605)
.+..+..+-++.-..+++++|+.+.+|..++.-- ..-..+|.+.+++|++... .|
T Consensus 195 WRERnp~~RI~~A~~ALeIN~eCA~AyvLLAEEE--a~Ti~~AE~l~k~ALka~e~~yr~sqq~qh~~~~~da~~rRDtn 272 (556)
T KOG3807|consen 195 WRERNPPARIKAAYQALEINNECATAYVLLAEEE--ATTIVDAERLFKQALKAGETIYRQSQQCQHQSPQHEAQLRRDTN 272 (556)
T ss_pred HHhcCcHHHHHHHHHHHhcCchhhhHHHhhhhhh--hhhHHHHHHHHHHHHHHHHHHHhhHHHHhhhccchhhhhhcccc
Confidence 5566677777778888999999999988887542 2235566666666554311 01
Q ss_pred H--HHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Q 007401 557 V--KAYLRRGTAREALFCYNEALQDFKHAMVLEP 588 (605)
Q Consensus 557 ~--~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 588 (605)
. ..-.+++.|-.++|+..+|++.++...+..|
T Consensus 273 vl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~p 306 (556)
T KOG3807|consen 273 VLVYIKRRLAMCARKLGRLREAVKIMRDLMKEFP 306 (556)
T ss_pred hhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcc
Confidence 1 2445689999999999999999988877666
No 444
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=51.30 E-value=23 Score=21.03 Aligned_cols=26 Identities=19% Similarity=0.108 Sum_probs=16.2
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHH
Q 007401 560 YLRRGTAREALFCYNEALQDFKHAMV 585 (605)
Q Consensus 560 ~~~la~~~~~~g~~~~A~~~~~~al~ 585 (605)
|..+-.+|.+.|++++|.+.|++..+
T Consensus 3 y~~li~~~~~~~~~~~a~~~~~~M~~ 28 (31)
T PF01535_consen 3 YNSLISGYCKMGQFEEALEVFDEMRE 28 (31)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHhH
Confidence 44555666666777777666665543
No 445
>PF13041 PPR_2: PPR repeat family
Probab=51.12 E-value=38 Score=23.30 Aligned_cols=32 Identities=22% Similarity=0.078 Sum_probs=26.4
Q ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Q 007401 556 NVKAYLRRGTAREALFCYNEALQDFKHAMVLE 587 (605)
Q Consensus 556 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 587 (605)
|...|..+-..+.+.|++++|.+.|++..+..
T Consensus 2 ~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g 33 (50)
T PF13041_consen 2 DVVTYNTLISGYCKAGKFEEALKLFKEMKKRG 33 (50)
T ss_pred chHHHHHHHHHHHHCcCHHHHHHHHHHHHHcC
Confidence 45577888888999999999999999888653
No 446
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=50.97 E-value=32 Score=26.82 Aligned_cols=30 Identities=13% Similarity=0.001 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q 007401 488 ASELLKEKGNAAFKGKQWNKAVNYYSEAIK 517 (605)
Q Consensus 488 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~ 517 (605)
.+..+.+.|..+-..|+.++|+.+|++++.
T Consensus 7 ~A~~~I~kaL~~dE~g~~e~Al~~Y~~gi~ 36 (79)
T cd02679 7 QAFEEISKALRADEWGDKEQALAHYRKGLR 36 (79)
T ss_pred HHHHHHHHHhhhhhcCCHHHHHHHHHHHHH
Confidence 345555566666666666666666666654
No 447
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=50.95 E-value=1.1e+02 Score=32.99 Aligned_cols=64 Identities=14% Similarity=0.011 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCC----CHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhc
Q 007401 489 SELLKEKGNAAFKGKQWNKAVNYYSEAIKL---NGT----SATYYSNRAAAYLELGC-FQQAEEDCSKTISL 552 (605)
Q Consensus 489 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~---~p~----~~~~~~~la~~~~~~~~-~~~A~~~~~~al~~ 552 (605)
.-.+..+|.++-..|+-..|..+|+..++. ..+ .+.++|.+|..|..++. ..++.+++.+|-..
T Consensus 449 ~lk~lL~g~~lR~Lg~~~~a~~~f~i~~~~e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~ 520 (546)
T KOG3783|consen 449 GLKYLLKGVILRNLGDSEVAPKCFKIQVEKESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREY 520 (546)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhh
Confidence 344444455555555555555555444421 111 13444555555555444 44555544444443
No 448
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=50.89 E-value=3.1e+02 Score=28.56 Aligned_cols=53 Identities=9% Similarity=-0.085 Sum_probs=28.4
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHH--HHcCCHHHHHHHHH
Q 007401 495 KGNAAFKGKQWNKAVNYYSEAIKLNGT-----SATYYSNRAAAY--LELGCFQQAEEDCS 547 (605)
Q Consensus 495 ~g~~~~~~g~~~~A~~~~~~al~~~p~-----~~~~~~~la~~~--~~~~~~~~A~~~~~ 547 (605)
++..+++.++|..|.+.|++++...++ ....+..+..+| ...=+|++|.+.++
T Consensus 136 ~~r~l~n~~dy~aA~~~~~~L~~r~l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~ 195 (380)
T TIGR02710 136 YARRAINAFDYLFAHARLETLLRRLLSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLN 195 (380)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhcccChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHh
Confidence 344556666666666666666655321 133344444443 33445666666665
No 449
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=50.70 E-value=1.2e+02 Score=35.42 Aligned_cols=58 Identities=12% Similarity=0.168 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 007401 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKT 549 (605)
Q Consensus 487 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a 549 (605)
+....|.++|....+.+...+|++.|-++ +++..|...-+..-+.|.|++-++++..|
T Consensus 1102 n~p~vWsqlakAQL~~~~v~dAieSyika-----dDps~y~eVi~~a~~~~~~edLv~yL~Ma 1159 (1666)
T KOG0985|consen 1102 NEPAVWSQLAKAQLQGGLVKDAIESYIKA-----DDPSNYLEVIDVASRTGKYEDLVKYLLMA 1159 (1666)
T ss_pred CChHHHHHHHHHHHhcCchHHHHHHHHhc-----CCcHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 44667888888888888888888887665 44455555555555555555555544443
No 450
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=50.40 E-value=2.5e+02 Score=29.70 Aligned_cols=97 Identities=18% Similarity=0.046 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCC--------------HHHHHHHHHHH
Q 007401 490 ELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTS------ATYYSNRAAAYLELGC--------------FQQAEEDCSKT 549 (605)
Q Consensus 490 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~~~--------------~~~A~~~~~~a 549 (605)
.....+|+.+|-.++|+-|...|+.+.+-..++ +.++-..|.+++..+. ++.|...|.++
T Consensus 209 ~q~R~LAD~aFml~Dy~~A~s~Y~~~k~Df~~Dkaw~~~A~~~Em~alsl~~~~~~~~~k~~~~~~~~~le~A~~~Y~~~ 288 (414)
T PF12739_consen 209 AQMRRLADLAFMLRDYELAYSTYRLLKKDFKNDKAWKYLAGAQEMAALSLLMQGQSISAKIRKDEIEPYLENAYYTYLKS 288 (414)
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHHHhhchhHHHHHhHHHHHHHHHHhcCCCCccccccccHHHHHHHHHHHHHhh
Confidence 346678999999999999999999987743322 2334445566655552 23344444442
Q ss_pred H----hcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q 007401 550 I----SLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVL 586 (605)
Q Consensus 550 l----~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 586 (605)
- .....-.......+.++...+.+.+|...+-+....
T Consensus 289 ~~~~~~~~~~a~R~~ll~~ell~~~~~~~~a~~~~~~~~~~ 329 (414)
T PF12739_consen 289 ALPRCSLPYYALRCALLLAELLKSRGGYWEAADQLIRWTSE 329 (414)
T ss_pred hccccccccchHHHHHHHHHHHHhcCccHHHHHHHHHHHHH
Confidence 1 111122346666777788889988887777666655
No 451
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=50.19 E-value=2.9e+02 Score=28.00 Aligned_cols=101 Identities=12% Similarity=0.060 Sum_probs=64.8
Q ss_pred ChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH
Q 007401 485 SIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNG------TSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVK 558 (605)
Q Consensus 485 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~ 558 (605)
..+..+++.+.+..|.+.||-+.|++.+.+.....- +-.-....+|..|....-..+-++-.+..++..-+ ++
T Consensus 100 E~ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgD-We 178 (393)
T KOG0687|consen 100 ESEVREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGD-WE 178 (393)
T ss_pred hHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCC-hh
Confidence 346678999999999999999999999888765321 11233445676665554455555555555554432 22
Q ss_pred ----HHHHHHHHHHHccCHHHHHHHHHHHHHh
Q 007401 559 ----AYLRRGTAREALFCYNEALQDFKHAMVL 586 (605)
Q Consensus 559 ----~~~~la~~~~~~g~~~~A~~~~~~al~~ 586 (605)
.--+.|.-.....++.+|...|-..+.-
T Consensus 179 RrNRlKvY~Gly~msvR~Fk~Aa~Lfld~vsT 210 (393)
T KOG0687|consen 179 RRNRLKVYQGLYCMSVRNFKEAADLFLDSVST 210 (393)
T ss_pred hhhhHHHHHHHHHHHHHhHHHHHHHHHHHccc
Confidence 2223455556677888888877766543
No 452
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=49.69 E-value=2.9e+02 Score=35.61 Aligned_cols=96 Identities=9% Similarity=-0.004 Sum_probs=71.7
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHH---hC----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHH
Q 007401 490 ELLKEKGNAAFKGKQWNKAVNYYSEAIK---LN----GTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLR 562 (605)
Q Consensus 490 ~~~~~~g~~~~~~g~~~~A~~~~~~al~---~~----p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 562 (605)
+.|.++...=....+..+-+-.+++++- .+ ..-.+.|...|.+....|+++.|-..+-+|.+.. -++++..
T Consensus 1630 d~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r--~~~i~~E 1707 (2382)
T KOG0890|consen 1630 DNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNALLNAKESR--LPEIVLE 1707 (2382)
T ss_pred hhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc--cchHHHH
Confidence 4454443332222234555555555542 23 2347899999999999999999999999988876 5889999
Q ss_pred HHHHHHHccCHHHHHHHHHHHHHhC
Q 007401 563 RGTAREALFCYNEALQDFKHAMVLE 587 (605)
Q Consensus 563 la~~~~~~g~~~~A~~~~~~al~~~ 587 (605)
+|..+-+.|+..+|+..+++.+.++
T Consensus 1708 ~AK~lW~~gd~~~Al~~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1708 RAKLLWQTGDELNALSVLQEILSKN 1732 (2382)
T ss_pred HHHHHHhhccHHHHHHHHHHHHHhh
Confidence 9999999999999999999999664
No 453
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=49.67 E-value=34 Score=26.35 Aligned_cols=30 Identities=10% Similarity=0.185 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q 007401 488 ASELLKEKGNAAFKGKQWNKAVNYYSEAIK 517 (605)
Q Consensus 488 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~ 517 (605)
.+..+...|...-..|+|++|+.+|.++++
T Consensus 5 ~A~~l~~~Ave~d~~~~y~eA~~~Y~~~i~ 34 (75)
T cd02677 5 QAAELIRLALEKEEEGDYEAAFEFYRAGVD 34 (75)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 345556666666667777777777777765
No 454
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=49.15 E-value=81 Score=26.17 Aligned_cols=46 Identities=26% Similarity=0.202 Sum_probs=31.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccC
Q 007401 527 SNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREALFC 572 (605)
Q Consensus 527 ~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 572 (605)
...|...+..||+.+|.+...++-+..++..-.|..-+++-..+||
T Consensus 63 l~~Gl~al~~G~~~~A~k~~~~a~~~~~~~~l~~L~AA~AA~~~gd 108 (108)
T PF07219_consen 63 LSRGLIALAEGDWQRAEKLLAKAAKLSDNPLLNYLLAARAAQAQGD 108 (108)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC
Confidence 3455666678888888888888877765555566666666666654
No 455
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=48.61 E-value=3.4e+02 Score=28.37 Aligned_cols=108 Identities=17% Similarity=0.203 Sum_probs=67.0
Q ss_pred CCCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHH------HHHHHHHcCCHHHHHHHHHHHHhcC
Q 007401 480 PDTNGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSN------RAAAYLELGCFQQAEEDCSKTISLD 553 (605)
Q Consensus 480 ~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~------la~~~~~~~~~~~A~~~~~~al~~~ 553 (605)
+....+.+.+..++-+|.+..-+.+|..|.+++-+++...|++...-+. .-.+-..+|++.+-..+.+..++.
T Consensus 238 pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~~alGf~q~v~k~~ivv~ll~geiPers~F~Qp~~~k- 316 (493)
T KOG2581|consen 238 PEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQHAALGFRQQVNKLMIVVELLLGEIPERSVFRQPGMRK- 316 (493)
T ss_pred ccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcchhhhhHHHHHHHHHHHHHHHcCCCcchhhhcCccHHH-
Confidence 3444455788999999999999999999999999999999985332221 122223467766543333222211
Q ss_pred CCCHHHHHHHHHH--HHHccCHHHHHHHHHHHHHhCCCC
Q 007401 554 KKNVKAYLRRGTA--REALFCYNEALQDFKHAMVLEPQN 590 (605)
Q Consensus 554 p~~~~~~~~la~~--~~~~g~~~~A~~~~~~al~~~p~~ 590 (605)
....|+.+..+ .-.+.+|.+-++.|..-+..+...
T Consensus 317 --sL~~Yf~Lt~AVr~gdlkkF~~~leq~k~~f~~D~ty 353 (493)
T KOG2581|consen 317 --SLRPYFKLTQAVRLGDLKKFNETLEQFKDKFQADGTY 353 (493)
T ss_pred --HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhCCcc
Confidence 23355555444 344555666666666666665543
No 456
>COG5091 SGT1 Suppressor of G2 allele of skp1 and related proteins [General function prediction only]
Probab=48.50 E-value=29 Score=33.57 Aligned_cols=93 Identities=23% Similarity=0.110 Sum_probs=63.4
Q ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH----------HcCCHHHHHHHHHHHHhcCCCC------HHHHH
Q 007401 498 AAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYL----------ELGCFQQAEEDCSKTISLDKKN------VKAYL 561 (605)
Q Consensus 498 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~----------~~~~~~~A~~~~~~al~~~p~~------~~~~~ 561 (605)
.++..++.=.|+..|.+.+.-.|.|..++..-+.|.- .--....|.+.+++|+-+.... ....+
T Consensus 4 ~L~D~~e~L~~L~~~~~~~~~~~~NL~~l~~~a~~lEk~~~~Fs~~~s~~~~~n~~e~~d~ALm~Ae~r~D~~~IG~~~~ 83 (368)
T COG5091 4 ALYDEKEPLKALHLYDEILKGSPTNLTALIFKAACLEKLYFGFSDWHSDATMENAKELLDKALMTAEGRGDRSKIGLVNF 83 (368)
T ss_pred chhcccchHHHhhhhhhhhccCCcceeEEeehhhhHHHHHhhhhhhhcccChhhHHHHHHHHHHhhhccCCcceeeeehh
Confidence 3455666667888888888877777444333333321 1223567888888888664321 23667
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHHhCCCC
Q 007401 562 RRGTAREALFCYNEALQDFKHAMVLEPQN 590 (605)
Q Consensus 562 ~la~~~~~~g~~~~A~~~~~~al~~~p~~ 590 (605)
+++..|+...+|+.|..||.+|+.+.-++
T Consensus 84 ~~~v~~~~ik~Ye~a~~~F~~A~~~~~~d 112 (368)
T COG5091 84 RYFVHFFNIKDYELAQSYFKKAKNLYVDD 112 (368)
T ss_pred hhHHHhhhHHHHHHHHHHHHHHHHHhhcc
Confidence 78888999999999999999999886554
No 457
>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=48.36 E-value=3e+02 Score=27.77 Aligned_cols=96 Identities=16% Similarity=0.098 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC--------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH--hcCCCCHH
Q 007401 489 SELLKEKGNAAFKGKQWNKAVNYYSEAIKLNG--------TSATYYSNRAAAYLELGCFQQAEEDCSKTI--SLDKKNVK 558 (605)
Q Consensus 489 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p--------~~~~~~~~la~~~~~~~~~~~A~~~~~~al--~~~p~~~~ 558 (605)
+.....++..|.+.++|.+|-..+.- +..+. .....+..+|..|++.++-.+|..+..++- ..+..|..
T Consensus 103 ~~irl~LAsiYE~Eq~~~~aaq~L~~-I~~~tg~~~~d~~~kl~l~iriarlyLe~~d~veae~~inRaSil~a~~~Ne~ 181 (399)
T KOG1497|consen 103 ASIRLHLASIYEKEQNWRDAAQVLVG-IPLDTGQKAYDVEQKLLLCIRIARLYLEDDDKVEAEAYINRASILQAESSNEQ 181 (399)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHhc-cCcccchhhhhhHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhcccCHH
Confidence 34455567777777777666554432 22221 013445666777777777777777766653 22344544
Q ss_pred HHHH----HHHHHHHccCHHHHHHHHHHHHH
Q 007401 559 AYLR----RGTAREALFCYNEALQDFKHAMV 585 (605)
Q Consensus 559 ~~~~----la~~~~~~g~~~~A~~~~~~al~ 585 (605)
.... .|+++-..++|-+|.+.|.+...
T Consensus 182 Lqie~kvc~ARvlD~krkFlEAAqrYyels~ 212 (399)
T KOG1497|consen 182 LQIEYKVCYARVLDYKRKFLEAAQRYYELSQ 212 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333 33344445556566555555443
No 458
>PF01239 PPTA: Protein prenyltransferase alpha subunit repeat; InterPro: IPR002088 Protein prenylation is the posttranslational attachment of either a farnesyl group or a geranylgeranyl group via a thioether linkage (-C-S-C-) to a cysteine at or near the carboxyl terminus of the protein. Farnesyl and geranylgeranyl groups are polyisoprenes, unsaturated hydrocarbons with a multiple of five carbons; the chain is 15 carbons long in the farnesyl moiety and 20 carbons long in the geranylgeranyl moiety. There are three different protein prenyltransferases in humans: farnesyltransferase (FT) and geranylgeranyltransferase 1 (GGT1) share the same motif (the CaaX box) around the cysteine in their substrates, and are thus called CaaX prenyltransferases, whereas geranylgeranyltransferase 2 (GGT2, also called Rab geranylgeranyltransferase) recognises a different motif and is thus called a non-CaaX prenyltransferase. Protein prenyltransferases are currently known only in eukaryotes, but they are widespread, being found in vertebrates, insects, nematodes, plants, fungi and protozoa, including several parasites. Each protein consists of two subunits, alpha and beta; the alpha subunit of FT and GGT1 is encoded by the same gene, FNTA. The alpha subunit is thought to participate in a stable complex with the isoprenyl substrate; the beta subunit binds the peptide substrate. In the alpha subunits of both types of protein prenyltransferases, seven tetratricopeptide repeats are formed by pairs of helices that are stabilised by conserved intercalating residues. The alpha subunits of GGT2 in mammals and plants also have an immunoglobulin-like domain between the fifth and sixth tetratricopeptide repeat, as well as leucine-rich repeats at the carboxyl terminus. The functions of these additional domains in GGT2 are as yet undefined, but they are apparently not directly involved in the interaction with substrates and Rab escort proteins. The tetratricopeptide repeats of the alpha subunit form a right-handed superhelix, which embraces the (alpha-alpha)6 barrel of the beta subunit []. ; GO: 0008318 protein prenyltransferase activity, 0018342 protein prenylation; PDB: 1S63_A 1LD7_A 1LD8_A 2H6G_A 1SA4_A 1MZC_A 1TN6_A 2F0Y_A 2H6H_A 2H6F_A ....
Probab=48.15 E-value=62 Score=19.71 Aligned_cols=30 Identities=27% Similarity=0.227 Sum_probs=25.3
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHhhC
Q 007401 576 ALQDFKHAMVLEPQNKAANLAEKRLRKLIG 605 (605)
Q Consensus 576 A~~~~~~al~~~p~~~~~~~~~~~~~~~~g 605 (605)
.++...+++..+|.|..++.+...+...++
T Consensus 2 El~~~~~~l~~~pknys~W~yR~~ll~~l~ 31 (31)
T PF01239_consen 2 ELEFTKKALEKDPKNYSAWNYRRWLLKQLN 31 (31)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHCcccccHHHHHHHHHHHcc
Confidence 466788899999999999999998877653
No 459
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=48.02 E-value=39 Score=20.45 Aligned_cols=26 Identities=23% Similarity=0.034 Sum_probs=18.8
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHH
Q 007401 560 YLRRGTAREALFCYNEALQDFKHAMV 585 (605)
Q Consensus 560 ~~~la~~~~~~g~~~~A~~~~~~al~ 585 (605)
|..+-.+|.+.|++++|.+.|++..+
T Consensus 3 ~n~li~~~~~~~~~~~a~~~~~~M~~ 28 (35)
T TIGR00756 3 YNTLIDGLCKAGRVEEALELFKEMLE 28 (35)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 55566677788888888888777654
No 460
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=47.46 E-value=97 Score=23.99 Aligned_cols=14 Identities=21% Similarity=0.252 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHhC
Q 007401 506 NKAVNYYSEAIKLN 519 (605)
Q Consensus 506 ~~A~~~~~~al~~~ 519 (605)
..|+++..+|++.+
T Consensus 4 ~~a~~l~~~Ave~D 17 (77)
T cd02683 4 LAAKEVLKRAVELD 17 (77)
T ss_pred HHHHHHHHHHHHHH
Confidence 45666666665543
No 461
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=47.09 E-value=1.9e+02 Score=33.85 Aligned_cols=62 Identities=19% Similarity=0.124 Sum_probs=52.9
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Q 007401 521 TSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLE 587 (605)
Q Consensus 521 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 587 (605)
+.+.+|..+|.+.++.+...+|++.|-+| +++..|...-.+..+.|.|++-+.++..+-+..
T Consensus 1102 n~p~vWsqlakAQL~~~~v~dAieSyika-----dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~ 1163 (1666)
T KOG0985|consen 1102 NEPAVWSQLAKAQLQGGLVKDAIESYIKA-----DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKV 1163 (1666)
T ss_pred CChHHHHHHHHHHHhcCchHHHHHHHHhc-----CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhh
Confidence 45789999999999999999999988553 577888888889999999999999998887654
No 462
>PF13041 PPR_2: PPR repeat family
Probab=47.05 E-value=91 Score=21.30 Aligned_cols=26 Identities=15% Similarity=0.213 Sum_probs=12.3
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH
Q 007401 492 LKEKGNAAFKGKQWNKAVNYYSEAIK 517 (605)
Q Consensus 492 ~~~~g~~~~~~g~~~~A~~~~~~al~ 517 (605)
|..+=..+.+.|++++|++.|++..+
T Consensus 6 yn~li~~~~~~~~~~~a~~l~~~M~~ 31 (50)
T PF13041_consen 6 YNTLISGYCKAGKFEEALKLFKEMKK 31 (50)
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 33344444455555555555555443
No 463
>COG2015 Alkyl sulfatase and related hydrolases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=46.68 E-value=73 Score=33.72 Aligned_cols=52 Identities=21% Similarity=0.087 Sum_probs=39.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHH
Q 007401 526 YSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEAL 577 (605)
Q Consensus 526 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 577 (605)
...+|.-.+..|+|.-+.+.+++++-.+|+|..+....+.++.++|--.++.
T Consensus 455 Vl~la~ea~~kGdyrW~a~lln~~VfAdp~n~~Ar~L~Ad~lEQLgYqaE~A 506 (655)
T COG2015 455 VLELAREAFDKGDYRWAAELLNQAVFADPGNKAARELQADALEQLGYQAESA 506 (655)
T ss_pred HHHHHHHHHhcccchHHHHHHhhHHhcCCccHHHHHHHHhHHHHhhhhhccc
Confidence 4456666677888888888888888888888888888888888888655543
No 464
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=46.56 E-value=1.5e+02 Score=32.69 Aligned_cols=82 Identities=11% Similarity=0.002 Sum_probs=67.1
Q ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHH
Q 007401 498 AAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEAL 577 (605)
Q Consensus 498 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 577 (605)
.+.+++..+++....+.-+......+......+..+...++.++|-.+|++.+..+|+ ..++-.+.-+.+.|-..+|.
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 94 (578)
T PRK15490 17 TLKQEKKLAQAVALIDSELPTEALTSLAMLKKAEFLHDVNETERAYALYETLIAQNND--EARYEYARRLYNTGLAKDAQ 94 (578)
T ss_pred HHHHHhhHHHHHHHHHHhCCccchhHHHHHHHhhhhhhhhhhHhHHHHHHHHHHhCCc--chHHHHHHHHHhhhhhhHHH
Confidence 4455667777777777666555566777788888888999999999999999999998 67888888899999888888
Q ss_pred HHHH
Q 007401 578 QDFK 581 (605)
Q Consensus 578 ~~~~ 581 (605)
..++
T Consensus 95 ~~~~ 98 (578)
T PRK15490 95 LILK 98 (578)
T ss_pred HHHH
Confidence 8877
No 465
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=46.47 E-value=3.3e+02 Score=31.44 Aligned_cols=111 Identities=14% Similarity=0.038 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC--------CC--HHHHHHHHHHHH------------HcCCHHHH--
Q 007401 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNG--------TS--ATYYSNRAAAYL------------ELGCFQQA-- 542 (605)
Q Consensus 487 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p--------~~--~~~~~~la~~~~------------~~~~~~~A-- 542 (605)
+....-.+.|..+...|++.+|+++|..+|-.-| +. ++-+...+.-|. ...+..++
T Consensus 989 ~~l~~kl~~gy~ltt~gKf~eAie~Frsii~~i~l~vvd~~~e~aea~~li~i~~eYi~gL~~E~~Rr~l~~~~~~~~~E 1068 (1202)
T KOG0292|consen 989 SQLNKKLQKGYKLTTEGKFGEAIEKFRSIIYSIPLLVVDSKEEEAEADELIKICREYIVGLSVELERRKLKKPNLEQQLE 1068 (1202)
T ss_pred HHHHHHHHHHHhhhccCcHHHHHHHHHHHHhheeEEEecchhhHHHHHHHHHHHHHHHhhheeeeeecccCCchHHHHHH
Confidence 3455667788889999999999999999986432 11 222222232221 11234444
Q ss_pred HHHHHHHHhcCCCCHH-HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 007401 543 EEDCSKTISLDKKNVK-AYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAANLAE 597 (605)
Q Consensus 543 ~~~~~~al~~~p~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 597 (605)
+..|-.-.++.|-+.- ++..--..+++++++..|.....+.+++.|..+.+....
T Consensus 1069 lAaYFt~~~Lqp~H~ilalrtA~n~ffK~kN~ktAs~fa~rLlel~~~~~~A~q~r 1124 (1202)
T KOG0292|consen 1069 LAAYFTHCKLQPMHRILALRTAMNVFFKLKNLKTAAEFARRLLELAPSPPVAEQAR 1124 (1202)
T ss_pred HHHHhhcCCCCcHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCChHHHHHH
Confidence 3333333445554443 333344468999999999999999999999776655443
No 466
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=46.21 E-value=1.3e+02 Score=39.88 Aligned_cols=114 Identities=16% Similarity=0.187 Sum_probs=72.8
Q ss_pred HHHHHHHHHHHHHCC-CHHHHHHHHHHHHH-h--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 007401 489 SELLKEKGNAAFKGK-QWNKAVNYYSEAIK-L--NGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRG 564 (605)
Q Consensus 489 a~~~~~~g~~~~~~g-~~~~A~~~~~~al~-~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la 564 (605)
...+.+.+.+|++.. .+..+++..+..-. . +...++.+..+|..+.+++++++|-+.|..|++++-.-.++|..-|
T Consensus 2774 F~K~req~~c~l~~~~e~~~gLevi~sTNl~yF~~~q~aeff~lkG~f~~kL~~~eeAn~~fs~AvQi~~~l~KaW~~Wg 2853 (3550)
T KOG0889|consen 2774 FQKLREQAKCYLQNKNELKTGLEVIESTNLMYFSDRQKAEFFTLKGMFLEKLGKFEEANKAFSAAVQIDDGLGKAWAEWG 2853 (3550)
T ss_pred HHHHHHHHHHHhcChHHHHHHHHHHhcccHHHHhhHHHHHHHHhhhHHHHHhcCcchhHHHHHHHHHHHhhhHHHHHHHH
Confidence 345555555555544 33444443332211 0 1233778888999999999999999999999999988899999888
Q ss_pred HHHHHc----cC----HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 007401 565 TAREAL----FC----YNEALQDFKHAMVLEPQNKAANLAEKRLRKL 603 (605)
Q Consensus 565 ~~~~~~----g~----~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~ 603 (605)
.-+.+. .. -..|+.||-+|.... ++..+...+++++..
T Consensus 2854 ~y~~~~f~~e~~ni~~a~~avsCyLqA~~~~-~~skaRk~iakvLwL 2899 (3550)
T KOG0889|consen 2854 KYLDNRFNKEPVNISFACNAVSCYLQAARLY-NSSKARKLIAKVLWL 2899 (3550)
T ss_pred HHHHHHHhccCcccHHHHHHHHHHHHHhccc-cchhhHHHHHHHHHH
Confidence 765332 22 245667677776654 345556666655443
No 467
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=45.66 E-value=1.8e+02 Score=28.53 Aligned_cols=79 Identities=11% Similarity=-0.020 Sum_probs=47.1
Q ss_pred hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH----HHHHHhcCCCCHHHHH
Q 007401 486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEED----CSKTISLDKKNVKAYL 561 (605)
Q Consensus 486 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~----~~~al~~~p~~~~~~~ 561 (605)
-.+.+.+..+|..+++.++|.+|..+|-.. +..++... +....+-+|.....+.
T Consensus 87 ~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~----------------------~~~~~~~~~~ll~~~~~~~~~~e~dlfi 144 (260)
T PF04190_consen 87 FGDPELHHLLAEKLWKEGNYYEAERHFLLG----------------------TDPSAFAYVMLLEEWSTKGYPSEADLFI 144 (260)
T ss_dssp T--HHHHHHHHHHHHHTT-HHHHHHHHHTS-----------------------HHHHHHHHHHHHHHHHHTSS--HHHHH
T ss_pred CCCHHHHHHHHHHHHhhccHHHHHHHHHhc----------------------CChhHHHHHHHHHHHHHhcCCcchhHHH
Confidence 356778888888888888877766554322 22111111 1223345566677777
Q ss_pred HHHHH-HHHccCHHHHHHHHHHHHHh
Q 007401 562 RRGTA-REALFCYNEALQDFKHAMVL 586 (605)
Q Consensus 562 ~la~~-~~~~g~~~~A~~~~~~al~~ 586 (605)
.++.. |...++...|...+....+.
T Consensus 145 ~RaVL~yL~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 145 ARAVLQYLCLGNLRDANELFDTFTSK 170 (260)
T ss_dssp HHHHHHHHHTTBHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 77765 67889999998888777765
No 468
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=45.65 E-value=29 Score=26.72 Aligned_cols=17 Identities=24% Similarity=0.202 Sum_probs=11.6
Q ss_pred cCCHHHHHHHHHHHHhc
Q 007401 536 LGCFQQAEEDCSKTISL 552 (605)
Q Consensus 536 ~~~~~~A~~~~~~al~~ 552 (605)
.++|++|..+|..++..
T Consensus 19 ~~~y~eA~~~Y~~~i~~ 35 (75)
T cd02677 19 EGDYEAAFEFYRAGVDL 35 (75)
T ss_pred HhhHHHHHHHHHHHHHH
Confidence 37777777777776654
No 469
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=44.25 E-value=1.2e+02 Score=34.59 Aligned_cols=33 Identities=18% Similarity=0.360 Sum_probs=29.1
Q ss_pred hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Q 007401 486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKL 518 (605)
Q Consensus 486 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~ 518 (605)
....+.+...|+.++++|+|++|...|-+.|..
T Consensus 365 d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~ 397 (933)
T KOG2114|consen 365 DTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF 397 (933)
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc
Confidence 345778899999999999999999999999864
No 470
>PF15469 Sec5: Exocyst complex component Sec5
Probab=43.66 E-value=1.5e+02 Score=27.09 Aligned_cols=81 Identities=12% Similarity=0.066 Sum_probs=40.9
Q ss_pred HHHCCCHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHH
Q 007401 499 AFKGKQWNKAVNYYSEAIKLNGTSA--TYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEA 576 (605)
Q Consensus 499 ~~~~g~~~~A~~~~~~al~~~p~~~--~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 576 (605)
+.+.|+|+.++..|.++-.+..+.. ...+.. -..+.++.+..|++.+. -.+. ......++.
T Consensus 96 ~i~~~dy~~~i~dY~kak~l~~~~~~~~~vf~~-----v~~eve~ii~~~r~~l~---------~~L~---~~~~s~~~~ 158 (182)
T PF15469_consen 96 CIKKGDYDQAINDYKKAKSLFEKYKQQVPVFQK-----VWSEVEKIIEEFREKLW---------EKLL---SPPSSQEEF 158 (182)
T ss_pred HHHcCcHHHHHHHHHHHHHHHHHhhhhHHHHHH-----HHHHHHHHHHHHHHHHH---------HHHh---CCCCCHHHH
Confidence 3568889999999988877643321 111111 11122222222222211 1000 011567777
Q ss_pred HHHHHHHHHhCCCCHHHHHH
Q 007401 577 LQDFKHAMVLEPQNKAANLA 596 (605)
Q Consensus 577 ~~~~~~al~~~p~~~~~~~~ 596 (605)
...+...++++++.-.++..
T Consensus 159 ~~~i~~Ll~L~~~~dPi~~~ 178 (182)
T PF15469_consen 159 LKLIRKLLELNVEEDPIWYW 178 (182)
T ss_pred HHHHHHHHhCCCCCCHHHHH
Confidence 77888888888865555444
No 471
>COG2015 Alkyl sulfatase and related hydrolases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=43.60 E-value=99 Score=32.81 Aligned_cols=48 Identities=21% Similarity=0.138 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhhC
Q 007401 558 KAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAANLAEKRLRKLIG 605 (605)
Q Consensus 558 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g 605 (605)
.....+|.--+..|+|.-+.+.+++++--+|+|..+....+.+++++|
T Consensus 453 drVl~la~ea~~kGdyrW~a~lln~~VfAdp~n~~Ar~L~Ad~lEQLg 500 (655)
T COG2015 453 DRVLELAREAFDKGDYRWAAELLNQAVFADPGNKAARELQADALEQLG 500 (655)
T ss_pred HHHHHHHHHHHhcccchHHHHHHhhHHhcCCccHHHHHHHHhHHHHhh
Confidence 344556777778888888888888888888888888888888877765
No 472
>PF12854 PPR_1: PPR repeat
Probab=43.30 E-value=57 Score=20.51 Aligned_cols=24 Identities=21% Similarity=0.220 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHH
Q 007401 524 TYYSNRAAAYLELGCFQQAEEDCS 547 (605)
Q Consensus 524 ~~~~~la~~~~~~~~~~~A~~~~~ 547 (605)
..|..+-..|.+.|+.++|.+.++
T Consensus 8 ~ty~~lI~~~Ck~G~~~~A~~l~~ 31 (34)
T PF12854_consen 8 VTYNTLIDGYCKAGRVDEAFELFD 31 (34)
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHH
Confidence 334444444445555555544443
No 473
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=41.17 E-value=2.2e+02 Score=30.63 Aligned_cols=62 Identities=16% Similarity=0.021 Sum_probs=32.1
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 007401 521 TSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAM 584 (605)
Q Consensus 521 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 584 (605)
++-.+|+.+++||.+. +-++=...+++.++.+-++...-..++..|.+ .+.+++...|.+++
T Consensus 97 e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa~~yEk-ik~sk~a~~f~Ka~ 158 (711)
T COG1747 97 ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELADKYEK-IKKSKAAEFFGKAL 158 (711)
T ss_pred chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHHHHHHH-hchhhHHHHHHHHH
Confidence 4445555566665555 33344445555555555555555555544443 55555555555554
No 474
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=40.87 E-value=1.7e+02 Score=28.89 Aligned_cols=93 Identities=17% Similarity=0.086 Sum_probs=54.2
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHcCCHHH----------HHHH---------
Q 007401 493 KEKGNAAFKGKQWNKAVNYYSEAIKLN--------GTSATYYSNRAAAYLELGCFQQ----------AEED--------- 545 (605)
Q Consensus 493 ~~~g~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~la~~~~~~~~~~~----------A~~~--------- 545 (605)
.++++...+.+++++|+..|.+.+... .+......+++..|...|++.. +...
T Consensus 7 le~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Ki 86 (421)
T COG5159 7 LELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKI 86 (421)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHH
Confidence 455677777778888888887777541 1123455667777776665322 2222
Q ss_pred HHHHHhcCC---CCH------------------------HHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 007401 546 CSKTISLDK---KNV------------------------KAYLRRGTAREALFCYNEALQDFKHAMV 585 (605)
Q Consensus 546 ~~~al~~~p---~~~------------------------~~~~~la~~~~~~g~~~~A~~~~~~al~ 585 (605)
.+..++..| ++. ..-..+..++++.|+|.+|+......+.
T Consensus 87 irtLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ 153 (421)
T COG5159 87 IRTLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLH 153 (421)
T ss_pred HHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 222233322 111 1233467788999999999887776653
No 475
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=40.50 E-value=1.5e+02 Score=32.03 Aligned_cols=72 Identities=17% Similarity=0.009 Sum_probs=34.1
Q ss_pred HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q 007401 515 AIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKK--NVKAYLRRGTAREALFCYNEALQDFKHAMVL 586 (605)
Q Consensus 515 al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 586 (605)
..+..|.++....+.+..+...|+.+.|+..++..+...-+ ..-.++-+|.++..+.+|.+|..++....+.
T Consensus 259 ~~~~~p~ga~wll~~ar~l~~~g~~eaa~~~~~~~v~~~~kQ~~~l~~fE~aw~~v~~~~~~~aad~~~~L~de 332 (546)
T KOG3783|consen 259 YRKRYPKGALWLLMEARILSIKGNSEAAIDMESLSIPIRMKQVKSLMVFERAWLSVGQHQYSRAADSFDLLRDE 332 (546)
T ss_pred HHHhCCCCccHHHHHHHHHHHcccHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhh
Confidence 33445555555555555555555544445544444441000 1124444555555555555555555544443
No 476
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=40.32 E-value=3.1e+02 Score=25.54 Aligned_cols=96 Identities=11% Similarity=-0.070 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH-
Q 007401 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNG-------TSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVK- 558 (605)
Q Consensus 487 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~- 558 (605)
.....+...+....+.|++++|...++++.+.-. ..++.| .-|.|-..+.+|.+|...|.-...-.-.+++
T Consensus 27 Rei~r~s~~aI~~~H~~~~eeA~~~l~~a~~~v~~Lk~~l~~~pel~-~ag~~~~a~QEyvEA~~l~~~l~~~~~ps~~E 105 (204)
T COG2178 27 REIVRLSGEAIFLLHRGDFEEAEKKLKKASEAVEKLKRLLAGFPELY-FAGFVTTALQEYVEATLLYSILKDGRLPSPEE 105 (204)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhhhHHHH-HHHhhcchHHHHHHHHHHHHHHhcCCCCCHHH
Confidence 4566777788888999999999999999876422 233333 3344444567899999888765544322221
Q ss_pred -----HHHHHH------------HHHHHccCHHHHHHHHHHH
Q 007401 559 -----AYLRRG------------TAREALFCYNEALQDFKHA 583 (605)
Q Consensus 559 -----~~~~la------------~~~~~~g~~~~A~~~~~~a 583 (605)
..|.+| ......|++++|...++-.
T Consensus 106 L~V~~~~YilGl~D~vGELrR~~le~l~~~~~~~Ae~~~~~M 147 (204)
T COG2178 106 LGVPPIAYILGLADAVGELRRHVLELLRKGSFEEAERFLKFM 147 (204)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 223333 3356778899987765543
No 477
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=40.06 E-value=2.2e+02 Score=30.19 Aligned_cols=79 Identities=14% Similarity=-0.059 Sum_probs=64.0
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Q 007401 511 YYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQ 589 (605)
Q Consensus 511 ~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 589 (605)
-+++-|+-+|++...|+.+-+-+-.++.+++-.+.|++...-.|--+.+|...-..-...++|+.-...|.++|...-+
T Consensus 30 rLRerIkdNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l~ 108 (660)
T COG5107 30 RLRERIKDNPTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSLN 108 (660)
T ss_pred HHHHHhhcCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhcc
Confidence 3555678899999999999999999999999999999998888877777766555555667888888888888875433
No 478
>COG5536 BET4 Protein prenyltransferase, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=39.75 E-value=73 Score=31.28 Aligned_cols=92 Identities=13% Similarity=0.071 Sum_probs=70.7
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH------HHccCHHHHH
Q 007401 506 NKAVNYYSEAIKLNGTSATYYSNRAAAYLEL--GCFQQAEEDCSKTISLDKKNVKAYLRRGTAR------EALFCYNEAL 577 (605)
Q Consensus 506 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~--~~~~~A~~~~~~al~~~p~~~~~~~~la~~~------~~~g~~~~A~ 577 (605)
+.-+.++..+++-+|.+-..|..+=.++-.- .++..-+...++.+..|+.|...|.++-.+. ..-.++++-.
T Consensus 91 dneld~~~~~lk~~PK~YqiW~HR~~~Le~~p~~~~~rEl~itkklld~DsrNyH~W~YR~~vl~~ie~~~N~S~~k~e~ 170 (328)
T COG5536 91 DNELDFLDEALKDNPKNYQIWHHRQWMLELFPKPSWGRELFITKKLLDSDSRNYHVWSYRRWVLRTIEDLFNFSDLKHEL 170 (328)
T ss_pred hcHHHHHHHHHhcCCchhhhhHHHHHHHHhCCCcccchhHHHHHHHhcccccccceeeeEeeeeecchhhccchhHHHHH
Confidence 4556678889999999999999998887544 5677778888999999999999888877666 3344445555
Q ss_pred HHHHHHHHhCCCCHHHHHHH
Q 007401 578 QDFKHAMVLEPQNKAANLAE 597 (605)
Q Consensus 578 ~~~~~al~~~p~~~~~~~~~ 597 (605)
++-..++..++.|..++.+.
T Consensus 171 eytt~~I~tdi~N~SaW~~r 190 (328)
T COG5536 171 EYTTSLIETDIYNNSAWHHR 190 (328)
T ss_pred HhHHHHHhhCCCChHHHHHH
Confidence 55566677788888877766
No 479
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=39.60 E-value=2.4e+02 Score=29.76 Aligned_cols=101 Identities=13% Similarity=0.135 Sum_probs=54.1
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCC-----CC---HHHH--------HHHHHHH-HHcCC-----HHHHHHHHHHH--
Q 007401 494 EKGNAAFKGKQWNKAVNYYSEAIKLNG-----TS---ATYY--------SNRAAAY-LELGC-----FQQAEEDCSKT-- 549 (605)
Q Consensus 494 ~~g~~~~~~g~~~~A~~~~~~al~~~p-----~~---~~~~--------~~la~~~-~~~~~-----~~~A~~~~~~a-- 549 (605)
+.|..++..|+|.+|+..|+.+|..-| +. .++. |-+|... ....+ .++..+.++-+
T Consensus 209 k~gyk~~t~gKF~eA~~~Fr~iL~~i~l~vv~~~~E~~e~~eli~icrEYilgl~iEl~Rr~l~~~~~~~~kR~lELAAY 288 (422)
T PF06957_consen 209 KEGYKLFTAGKFEEAIEIFRSILHSIPLLVVESREEEDEAKELIEICREYILGLSIELERRELPKDPVEDQKRNLELAAY 288 (422)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHHHC--BSSCHHHHHHHHHHHHHHHHHHHHHHHHHHCTS-TTTHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHhheeeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhHHHHHHHHHH
Confidence 447788999999999999999987522 11 1111 1222111 11111 22222222222
Q ss_pred ---HhcCCCCHHHHHHHHH-HHHHccCHHHHHHHHHHHHHhCCCCHHHH
Q 007401 550 ---ISLDKKNVKAYLRRGT-AREALFCYNEALQDFKHAMVLEPQNKAAN 594 (605)
Q Consensus 550 ---l~~~p~~~~~~~~la~-~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 594 (605)
.++.|.+...-++.|. ..++.++|..|....++.|++.|....+.
T Consensus 289 FThc~LQp~H~~LaLr~AM~~~~K~KNf~tAa~FArRLLel~p~~~~a~ 337 (422)
T PF06957_consen 289 FTHCKLQPSHLILALRSAMSQAFKLKNFITAASFARRLLELNPSPEVAE 337 (422)
T ss_dssp HCCS---HHHHHHHHHHHHHHCCCTTBHHHHHHHHHHHHCT--SCHHHH
T ss_pred HhcCCCcHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCHHHHH
Confidence 1223333333333443 34788999999999999999999876543
No 480
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=39.59 E-value=80 Score=19.08 Aligned_cols=27 Identities=22% Similarity=-0.043 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHH
Q 007401 559 AYLRRGTAREALFCYNEALQDFKHAMV 585 (605)
Q Consensus 559 ~~~~la~~~~~~g~~~~A~~~~~~al~ 585 (605)
.|..+-.++.+.|+++.|.+.|+...+
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~ 29 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKE 29 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 355566667777777777777766554
No 481
>smart00671 SEL1 Sel1-like repeats. These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
Probab=39.36 E-value=58 Score=20.13 Aligned_cols=26 Identities=27% Similarity=0.318 Sum_probs=13.1
Q ss_pred HHHHHHHHHH----CCCHHHHHHHHHHHHH
Q 007401 492 LKEKGNAAFK----GKQWNKAVNYYSEAIK 517 (605)
Q Consensus 492 ~~~~g~~~~~----~g~~~~A~~~~~~al~ 517 (605)
.+.+|..++. ..++++|+.+|+++.+
T Consensus 4 ~~~lg~~~~~G~g~~~d~~~A~~~~~~Aa~ 33 (36)
T smart00671 4 QYNLGQMYEYGLGVKKDLEKALEYYKKAAE 33 (36)
T ss_pred HHHHHHHHHcCCCCCcCHHHHHHHHHHHHH
Confidence 3444544443 1255666666666554
No 482
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=39.10 E-value=1.7e+02 Score=29.62 Aligned_cols=71 Identities=14% Similarity=0.127 Sum_probs=51.2
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 007401 495 KGNAAFKGKQWNKAVNYYSEAIKL--NGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGT 565 (605)
Q Consensus 495 ~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~ 565 (605)
.+....+..-.+.++...+..... -..+..++..+|..+.++|+..+|.+.|++++.+..+..+..+.+..
T Consensus 335 RAVAla~~~Gp~agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~aer~~l~~r 407 (415)
T COG4941 335 RAVALAMREGPAAGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIALARNAAERAFLRQR 407 (415)
T ss_pred HHHHHHHhhhHHhHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCChHHHHHHHHH
Confidence 344444444456666666655543 23456777889999999999999999999999999887776555444
No 483
>PF08238 Sel1: Sel1 repeat; InterPro: IPR006597 Sel1-like repeats are tetratricopeptide repeat sequences originally identified in a Caenorhabditis elegans receptor molecule which is a key negative regulator of the Notch pathway []. Mammalian homologues have since been identified although these mainly pancreatic proteins have yet to have a function assigned.; PDB: 2XM6_A 3RJV_A 1OUV_A 1KLX_A.
Probab=38.90 E-value=70 Score=20.23 Aligned_cols=13 Identities=23% Similarity=0.445 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHH
Q 007401 573 YNEALQDFKHAMV 585 (605)
Q Consensus 573 ~~~A~~~~~~al~ 585 (605)
+++|.++|+++-+
T Consensus 24 ~~~A~~~~~~Aa~ 36 (39)
T PF08238_consen 24 YEKAFKWYEKAAE 36 (39)
T ss_dssp HHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHH
Confidence 4555555555544
No 484
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=38.48 E-value=64 Score=35.43 Aligned_cols=132 Identities=17% Similarity=0.160 Sum_probs=66.7
Q ss_pred CCceeEEeeccCCchhHHhHHHHHHhHHHHHHhhhccCCCCCCCCCChHHHHHHH------HHHHHHHHCCCHHHHHHHH
Q 007401 439 HPISISFITYHGGDKFLLDTVLDLYDSLQEQVNIASNLVPLPDTNGSIDASELLK------EKGNAAFKGKQWNKAVNYY 512 (605)
Q Consensus 439 lp~g~~~~~~~~~d~~ll~~a~~l~~~~~e~~~~~~~~~~~~~~~~~~~~a~~~~------~~g~~~~~~g~~~~A~~~~ 512 (605)
.-..+-+++.++.-+.++++++.+...-.+......... ......+-.++.+. .+-..+...+++++|...-
T Consensus 719 ~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~yl--k~l~~~gLAaeIF~k~gD~ksiVqlHve~~~W~eAFalA 796 (1081)
T KOG1538|consen 719 HVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYL--KKLDSPGLAAEIFLKMGDLKSLVQLHVETQRWDEAFALA 796 (1081)
T ss_pred hhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHH--hhccccchHHHHHHHhccHHHHhhheeecccchHhHhhh
Confidence 345556677777777888888776554333222221111 11111111222222 2333444566777776654
Q ss_pred HHHHHhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHH
Q 007401 513 SEAIKLNGTS-ATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEAL 577 (605)
Q Consensus 513 ~~al~~~p~~-~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 577 (605)
++ .|+. .++|+-.|+.+.+..+|.+|-+.|.+|=+... -...+-++..-.....+|.+|-
T Consensus 797 e~----hPe~~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~E-A~~vLeQLtnnav~E~Rf~DA~ 857 (1081)
T KOG1538|consen 797 EK----HPEFKDDVYMPYAQWLAENDRFEEAQKAFHKAGRQRE-AVQVLEQLTNNAVAESRFNDAA 857 (1081)
T ss_pred hh----CccccccccchHHHHhhhhhhHHHHHHHHHHhcchHH-HHHHHHHhhhhhhhhhhhccch
Confidence 43 3332 45677777887788888888777766543321 1223333333334444454443
No 485
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=38.45 E-value=5.5e+02 Score=27.85 Aligned_cols=35 Identities=14% Similarity=0.066 Sum_probs=24.6
Q ss_pred HHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 007401 565 TAREALFCYNEALQDFKHAMVLEPQNKAANLAEKR 599 (605)
Q Consensus 565 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~ 599 (605)
.-|....++.+|+..+.-.++++..|..+...+..
T Consensus 213 ~~Ys~~eN~~eai~Ilk~il~~d~k~~~ar~~~i~ 247 (711)
T COG1747 213 KKYSENENWTEAIRILKHILEHDEKDVWARKEIIE 247 (711)
T ss_pred HHhccccCHHHHHHHHHHHhhhcchhhhHHHHHHH
Confidence 34556677888888888888887777766655543
No 486
>PF13226 DUF4034: Domain of unknown function (DUF4034)
Probab=38.39 E-value=1.6e+02 Score=29.22 Aligned_cols=68 Identities=12% Similarity=-0.046 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC----------------------CHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 007401 507 KAVNYYSEAIKLNGTSATYYSNRAAAYLELG----------------------CFQQAEEDCSKTISLDKKNVKAYLRRG 564 (605)
Q Consensus 507 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~~----------------------~~~~A~~~~~~al~~~p~~~~~~~~la 564 (605)
+-.+.++.-++..|++..++..+|..+.... ..++|..++.+|+.++|+...++..+-
T Consensus 61 ~~~~~LkaWv~a~P~Sy~A~La~g~~~~~~Aw~~RG~~~A~~V~~~~W~~~~~~~d~A~~~ll~A~~l~pr~~~A~~~m~ 140 (277)
T PF13226_consen 61 ARLAVLKAWVAACPKSYHAHLAMGMYWVHRAWDIRGSGYASTVTEAQWLGAHQACDQAVAALLKAIELSPRPVAAAIGMI 140 (277)
T ss_pred hHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHccchhcccCHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHH
Confidence 4567777788899999998888888876441 257788899999999999999888888
Q ss_pred HHHHHccCHH
Q 007401 565 TAREALFCYN 574 (605)
Q Consensus 565 ~~~~~~g~~~ 574 (605)
.+-...|+..
T Consensus 141 ~~s~~fgeP~ 150 (277)
T PF13226_consen 141 NISAYFGEPD 150 (277)
T ss_pred HHHhhcCCch
Confidence 8777777653
No 487
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=37.35 E-value=65 Score=24.81 Aligned_cols=32 Identities=19% Similarity=0.172 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 007401 505 WNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTIS 551 (605)
Q Consensus 505 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 551 (605)
.++|+....+|+..+ ..|+|++|+..|.++++
T Consensus 3 l~~Ai~lv~~Av~~D---------------~~g~y~eA~~lY~~ale 34 (75)
T cd02684 3 LEKAIALVVQAVKKD---------------QRGDAAAALSLYCSALQ 34 (75)
T ss_pred HHHHHHHHHHHHHHH---------------HhccHHHHHHHHHHHHH
Confidence 456666666665543 34555555555555443
No 488
>PF12753 Nro1: Nuclear pore complex subunit Nro1; InterPro: IPR024318 In fission yeast, Nro1 is a positive regulator of the stability of Sre1N, the sterol regulatory element-binding protein, which is an ER membrane-bound transcription factor that controls adaptation to low oxygen-growth []. In addition, the fission yeast Nro1 is a direct inhibitor of a protein that inhibits SreN1 degradation, Ofd1 (an oxoglutamate deoxygenase). The outcome of this reactivity is that Ofd1 acts as an oxygen sensor that regulates the binding of Nro1 to Ofd1 to control the stability of Sre1N []. This entry also represents ETT1, an Nro1 ortholog []. ETT1 is required for correct translation termination and probably involved in regulation of hypoxic gene expression in association TPA1 []. It inhibits replication of Brome mosaic virus [].; GO: 0005515 protein binding, 0005634 nucleus; PDB: 3QTM_B 3MSV_B 3QTN_B.
Probab=37.24 E-value=43 Score=34.55 Aligned_cols=13 Identities=38% Similarity=0.355 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHH
Q 007401 573 YNEALQDFKHAMV 585 (605)
Q Consensus 573 ~~~A~~~~~~al~ 585 (605)
|.+|.+++.+|-.
T Consensus 378 Y~eAE~iL~kAN~ 390 (404)
T PF12753_consen 378 YKEAEKILKKANK 390 (404)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhh
Confidence 4445555554443
No 489
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=36.80 E-value=71 Score=20.13 Aligned_cols=26 Identities=15% Similarity=0.308 Sum_probs=13.4
Q ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 007401 538 CFQQAEEDCSKTISLDKKNVKAYLRRG 564 (605)
Q Consensus 538 ~~~~A~~~~~~al~~~p~~~~~~~~la 564 (605)
+++.|...|++.+...| +++.|...|
T Consensus 2 E~dRAR~IyeR~v~~hp-~~k~WikyA 27 (32)
T PF02184_consen 2 EFDRARSIYERFVLVHP-EVKNWIKYA 27 (32)
T ss_pred hHHHHHHHHHHHHHhCC-CchHHHHHH
Confidence 34555555666555554 344444443
No 490
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=35.65 E-value=1.9e+02 Score=31.71 Aligned_cols=80 Identities=19% Similarity=0.085 Sum_probs=48.9
Q ss_pred HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--------CCCHHHHHH--------
Q 007401 499 AFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLD--------KKNVKAYLR-------- 562 (605)
Q Consensus 499 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~-------- 562 (605)
..+.|+++.|.+... ..++..-|..+|.+.++.+++..|.+++.++..+. .++.+.+..
T Consensus 647 al~lgrl~iA~~la~-----e~~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d~~~LlLl~t~~g~~~~l~~la~~~~~~ 721 (794)
T KOG0276|consen 647 ALKLGRLDIAFDLAV-----EANSEVKWRQLGDAALSAGELPLASECFLRARDLGSLLLLYTSSGNAEGLAVLASLAKKQ 721 (794)
T ss_pred hhhcCcHHHHHHHHH-----hhcchHHHHHHHHHHhhcccchhHHHHHHhhcchhhhhhhhhhcCChhHHHHHHHHHHhh
Confidence 355666666655432 23556677778888888888888888777765442 233332222
Q ss_pred ----HH-HHHHHccCHHHHHHHHHHH
Q 007401 563 ----RG-TAREALFCYNEALQDFKHA 583 (605)
Q Consensus 563 ----la-~~~~~~g~~~~A~~~~~~a 583 (605)
.| .+|+..|+++++++.+.+.
T Consensus 722 g~~N~AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 722 GKNNLAFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred cccchHHHHHHHcCCHHHHHHHHHhc
Confidence 22 3677788888887776654
No 491
>PRK11619 lytic murein transglycosylase; Provisional
Probab=35.12 E-value=3.4e+02 Score=30.71 Aligned_cols=96 Identities=11% Similarity=-0.030 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 007401 489 SELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTARE 568 (605)
Q Consensus 489 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 568 (605)
...+..+|......+.-.+|...+.++.... .+....-.+....+..++++.....+...-....+.....|=+|.++.
T Consensus 279 ~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~-~~~~~~e~r~r~Al~~~dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~~ 357 (644)
T PRK11619 279 QELRDIVAWRLMGNDVTDEQAKWRDDVIMRS-QSTSLLERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLL 357 (644)
T ss_pred HHHHHHHHHHHHhccCCHHHHHHHHhccccc-CCcHHHHHHHHHHHHccCHHHHHHHHHhcCHhhccCHhhHHHHHHHHH
Confidence 4445555655555543567777777655432 233334444445557778877766666643333345667777888888
Q ss_pred HccCHHHHHHHHHHHHH
Q 007401 569 ALFCYNEALQDFKHAMV 585 (605)
Q Consensus 569 ~~g~~~~A~~~~~~al~ 585 (605)
.+|+.++|...|+++..
T Consensus 358 ~~g~~~~A~~~~~~~a~ 374 (644)
T PRK11619 358 EQGRKAEAEEILRQLMQ 374 (644)
T ss_pred HcCCHHHHHHHHHHHhc
Confidence 88888888888888743
No 492
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=34.51 E-value=96 Score=23.15 Aligned_cols=13 Identities=38% Similarity=0.434 Sum_probs=5.0
Q ss_pred ccCHHHHHHHHHH
Q 007401 570 LFCYNEALQDFKH 582 (605)
Q Consensus 570 ~g~~~~A~~~~~~ 582 (605)
.|++++|+.+|.+
T Consensus 18 ~g~~~~A~~~Y~~ 30 (69)
T PF04212_consen 18 AGNYEEALELYKE 30 (69)
T ss_dssp TTSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 3344443333333
No 493
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=34.33 E-value=84 Score=28.90 Aligned_cols=49 Identities=8% Similarity=0.002 Sum_probs=37.1
Q ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 007401 496 GNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEED 545 (605)
Q Consensus 496 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~ 545 (605)
-.++.+.|.|++|.+.+++... +|++......|..+-.+.+.|..-++.
T Consensus 118 V~VCm~~g~Fk~A~eiLkr~~~-d~~~~~~r~kL~~II~~Kd~~h~~lqn 166 (200)
T cd00280 118 VAVCMENGEFKKAEEVLKRLFS-DPESQKLRMKLLMIIREKDPAHPVLQN 166 (200)
T ss_pred HHHHHhcCchHHHHHHHHHHhc-CCCchhHHHHHHHHHHccccccHHHHh
Confidence 4567899999999999999999 888877777777666666655554443
No 494
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=33.94 E-value=3.6e+02 Score=27.82 Aligned_cols=46 Identities=17% Similarity=0.052 Sum_probs=41.7
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 007401 503 KQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSK 548 (605)
Q Consensus 503 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~ 548 (605)
...-+|+..++.++...|.|......+..+|..+|-...|.+.|..
T Consensus 197 ~~l~~Ai~lLE~~l~~s~~n~~~~LlLvrlY~~LG~~~~A~~~~~~ 242 (365)
T PF09797_consen 197 EYLLQAIALLEHALKKSPHNYQLKLLLVRLYSLLGAGSLALEHYES 242 (365)
T ss_pred HHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 3467888999999999999999999999999999999999998865
No 495
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=33.86 E-value=99 Score=34.64 Aligned_cols=101 Identities=18% Similarity=0.181 Sum_probs=63.5
Q ss_pred HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhcCC--------CCHHHHHHHHH---HH
Q 007401 500 FKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGC-FQQAEEDCSKTISLDK--------KNVKAYLRRGT---AR 567 (605)
Q Consensus 500 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~-~~~A~~~~~~al~~~p--------~~~~~~~~la~---~~ 567 (605)
-..+..+.|+++|+++.+..|.. ..-.|++..+...|+ |+...+.-.-.++++. ++..-|+-.|. +.
T Consensus 298 tDa~s~~~a~~WyrkaFeveP~~-~sGIN~atLL~aaG~~Fens~Elq~IgmkLn~LlgrKG~leklq~YWdV~~y~~as 376 (1226)
T KOG4279|consen 298 TDAESLNHAIEWYRKAFEVEPLE-YSGINLATLLRAAGEHFENSLELQQIGMKLNSLLGRKGALEKLQEYWDVATYFEAS 376 (1226)
T ss_pred cchhhHHHHHHHHHHHhccCchh-hccccHHHHHHHhhhhccchHHHHHHHHHHHHHhhccchHHHHHHHHhHHHhhhhh
Confidence 33556788999999999998874 334566666655553 4444444333444432 11122222222 23
Q ss_pred HHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 007401 568 EALFCYNEALQDFKHAMVLEPQNKAANLAEKRLR 601 (605)
Q Consensus 568 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 601 (605)
.-.++|.+|++.-++.++++|-.......++.+.
T Consensus 377 VLAnd~~kaiqAae~mfKLk~P~WYLkS~meni~ 410 (1226)
T KOG4279|consen 377 VLANDYQKAIQAAEMMFKLKPPVWYLKSTMENIL 410 (1226)
T ss_pred hhccCHHHHHHHHHHHhccCCceehHHHHHHHHH
Confidence 4568999999999999999987776666666544
No 496
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=33.79 E-value=3.7e+02 Score=26.64 Aligned_cols=101 Identities=12% Similarity=0.049 Sum_probs=69.6
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC----------CHHHHHHH----HHHHHHcCCHHHHHHHHHHHHhcCCC
Q 007401 490 ELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGT----------SATYYSNR----AAAYLELGCFQQAEEDCSKTISLDKK 555 (605)
Q Consensus 490 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~----------~~~~~~~l----a~~~~~~~~~~~A~~~~~~al~~~p~ 555 (605)
..+-.-++.++-..||..|++..+++++.-.+ ..+.-..+ -+++.+++++.+++...-+-++.-.+
T Consensus 36 ~lLe~Aad~LvV~rdF~aal~tCerglqsL~~~a~~ee~~~~~~evK~sLcvvGIQALAEmnrWreVLsWvlqyYq~pEk 115 (309)
T PF07163_consen 36 SLLEEAADLLVVHRDFQAALETCERGLQSLASDADAEEPAGSSLEVKCSLCVVGIQALAEMNRWREVLSWVLQYYQVPEK 115 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchhhhhhhhhhhhHHHHHHHhhHHHHHHHHHHHhcCccc
Confidence 44555577778889999999999999874311 11222222 35677899999999888776654433
Q ss_pred -CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH
Q 007401 556 -NVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNK 591 (605)
Q Consensus 556 -~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 591 (605)
-++..-..-..|.+.++.....+.-..-++ +|+|.
T Consensus 116 lPpkIleLCILLysKv~Ep~amlev~~~WL~-~p~Nq 151 (309)
T PF07163_consen 116 LPPKILELCILLYSKVQEPAAMLEVASAWLQ-DPSNQ 151 (309)
T ss_pred CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHh-CcccC
Confidence 356777777788999998877666655554 67664
No 497
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=33.42 E-value=3.3e+02 Score=26.45 Aligned_cols=66 Identities=18% Similarity=0.087 Sum_probs=37.9
Q ss_pred hHHHHHHHHHHHHHHH-----CCC-----HHHHHHHHHHHHHh-----CCCCHH---HHHHHHHHHHH-cCCHHHHHHHH
Q 007401 486 IDASELLKEKGNAAFK-----GKQ-----WNKAVNYYSEAIKL-----NGTSAT---YYSNRAAAYLE-LGCFQQAEEDC 546 (605)
Q Consensus 486 ~~~a~~~~~~g~~~~~-----~g~-----~~~A~~~~~~al~~-----~p~~~~---~~~~la~~~~~-~~~~~~A~~~~ 546 (605)
...+..+...|+.|-. .|+ -++|.+.|++|+++ .|.++- ...|.+..|+. +++.++|++..
T Consensus 115 eskVFy~KmKGDYyRYlaE~~~~~e~~~~~~~a~~aY~~A~e~a~~~L~pt~PirLgLaLN~SVF~yEI~~~~~~A~~lA 194 (244)
T smart00101 115 ESKVFYLKMKGDYHRYLAEFKTGAERKEAAENTLVAYKSAQDIALAELPPTHPIRLGLALNFSVFYYEILNSPDRACNLA 194 (244)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 3456666666666532 222 34777888887754 355543 23444555554 57777777666
Q ss_pred HHHHh
Q 007401 547 SKTIS 551 (605)
Q Consensus 547 ~~al~ 551 (605)
++|+.
T Consensus 195 k~afd 199 (244)
T smart00101 195 KQAFD 199 (244)
T ss_pred HHHHH
Confidence 66553
No 498
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=33.31 E-value=90 Score=23.85 Aligned_cols=17 Identities=35% Similarity=0.415 Sum_probs=9.1
Q ss_pred HcCCHHHHHHHHHHHHh
Q 007401 535 ELGCFQQAEEDCSKTIS 551 (605)
Q Consensus 535 ~~~~~~~A~~~~~~al~ 551 (605)
..|++++|+.+|.++++
T Consensus 20 ~~g~~~eAl~~Y~~a~e 36 (77)
T smart00745 20 EAGDYEEALELYKKAIE 36 (77)
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 35566655555555443
No 499
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=33.17 E-value=82 Score=24.59 Aligned_cols=18 Identities=39% Similarity=0.601 Sum_probs=11.9
Q ss_pred CCHHHHHHHHHHHHhcCC
Q 007401 537 GCFQQAEEDCSKTISLDK 554 (605)
Q Consensus 537 ~~~~~A~~~~~~al~~~p 554 (605)
+.|++|.++.++|++.|.
T Consensus 3 ~~~~~A~~~I~kaL~~dE 20 (79)
T cd02679 3 GYYKQAFEEISKALRADE 20 (79)
T ss_pred hHHHHHHHHHHHHhhhhh
Confidence 356777777777776653
No 500
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=32.89 E-value=2.5e+02 Score=29.04 Aligned_cols=46 Identities=15% Similarity=-0.003 Sum_probs=42.0
Q ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 007401 538 CFQQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHA 583 (605)
Q Consensus 538 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 583 (605)
..-+|+..++.+++.+|.|......+..+|..+|-...|.+.|...
T Consensus 198 ~l~~Ai~lLE~~l~~s~~n~~~~LlLvrlY~~LG~~~~A~~~~~~L 243 (365)
T PF09797_consen 198 YLLQAIALLEHALKKSPHNYQLKLLLVRLYSLLGAGSLALEHYESL 243 (365)
T ss_pred HHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHhc
Confidence 4678999999999999999999999999999999999999988653
Done!