Query 007401
Match_columns 605
No_of_seqs 540 out of 3311
Neff 9.4
Searched_HMMs 29240
Date Tue Mar 26 00:53:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007401.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007401hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2dc0_A Probable amidase; struc 100.0 1.3E-91 4.4E-96 736.8 28.2 406 27-465 13-432 (434)
2 3ip4_A Glutamyl-tRNA(Gln) amid 100.0 2.9E-90 9.9E-95 737.5 27.8 424 20-465 6-475 (485)
3 3h0l_A Glutamyl-tRNA(Gln) amid 100.0 1.8E-89 6E-94 727.5 26.9 425 21-466 6-469 (478)
4 3kfu_E Glutamyl-tRNA(Gln) amid 100.0 3.2E-89 1.1E-93 723.2 28.5 416 27-465 13-457 (471)
5 1o9p_A Malonamidase E2; malona 100.0 2E-88 6.7E-93 707.5 34.0 394 27-467 14-411 (414)
6 3a2q_A 6-aminohexanoate-cyclic 100.0 3.5E-89 1.2E-93 731.4 25.6 420 21-465 9-473 (493)
7 2gi3_A Glutamyl-tRNA(Gln) amid 100.0 3.4E-88 1.2E-92 720.7 27.4 402 27-465 19-460 (476)
8 1m22_A Peptide amidase, PAM; e 100.0 3.2E-87 1.1E-91 717.2 24.1 406 21-466 12-484 (503)
9 3a1k_A Amidase; AS family enzy 100.0 2.6E-85 9E-90 701.8 28.5 414 29-464 27-499 (521)
10 3ppm_A Fatty-acid amide hydrol 100.0 8.7E-84 3E-88 691.6 24.2 441 9-468 60-568 (573)
11 4gco_A Protein STI-1; structur 99.8 3.6E-19 1.2E-23 154.7 17.2 118 484-601 8-125 (126)
12 3gyz_A Chaperone protein IPGC; 99.7 2.4E-16 8.3E-21 141.1 17.5 111 481-591 28-138 (151)
13 4ga2_A E3 SUMO-protein ligase 99.7 9.3E-17 3.2E-21 143.9 14.8 122 484-605 26-148 (150)
14 3upv_A Heat shock protein STI1 99.7 2.8E-16 9.5E-21 135.9 16.8 118 487-604 2-125 (126)
15 2hr2_A Hypothetical protein; a 99.7 1.4E-16 4.9E-21 141.3 10.6 115 487-601 9-146 (159)
16 2vgx_A Chaperone SYCD; alterna 99.7 1.6E-15 5.5E-20 135.4 16.5 116 485-600 17-132 (148)
17 3sz7_A HSC70 cochaperone (SGT) 99.7 1.4E-15 4.9E-20 138.0 16.2 113 483-595 5-117 (164)
18 4gcn_A Protein STI-1; structur 99.7 1.6E-15 5.3E-20 131.7 15.6 114 486-600 5-125 (127)
19 2xcb_A PCRH, regulatory protei 99.7 1.9E-15 6.6E-20 133.8 16.1 121 482-602 11-131 (142)
20 3rkv_A Putative peptidylprolyl 99.7 1.4E-15 4.9E-20 137.7 15.3 119 485-603 7-144 (162)
21 4gyw_A UDP-N-acetylglucosamine 99.6 6E-15 2.1E-19 164.9 18.4 146 455-605 12-159 (723)
22 4gyw_A UDP-N-acetylglucosamine 99.6 8.5E-15 2.9E-19 163.7 17.4 122 484-605 4-125 (723)
23 2lni_A Stress-induced-phosphop 99.6 2.3E-14 7.9E-19 124.0 15.6 124 482-605 9-132 (133)
24 2vyi_A SGTA protein; chaperone 99.6 6.7E-14 2.3E-18 120.3 18.4 122 484-605 7-128 (131)
25 2pl2_A Hypothetical conserved 99.6 1.8E-14 6E-19 137.5 15.6 146 454-605 7-165 (217)
26 2pl2_A Hypothetical conserved 99.6 3.5E-14 1.2E-18 135.4 16.8 120 485-605 69-199 (217)
27 3urz_A Uncharacterized protein 99.6 1.9E-14 6.6E-19 136.2 14.8 115 488-602 3-133 (208)
28 1hxi_A PEX5, peroxisome target 99.6 1.6E-14 5.6E-19 124.1 12.9 104 489-592 17-120 (121)
29 3q49_B STIP1 homology and U bo 99.6 2.9E-14 9.9E-19 124.6 14.7 117 486-602 6-127 (137)
30 1elw_A TPR1-domain of HOP; HOP 99.6 8.7E-14 3E-18 117.3 17.1 115 488-602 3-117 (118)
31 1p5q_A FKBP52, FK506-binding p 99.6 4.6E-14 1.6E-18 144.2 17.4 120 485-604 143-277 (336)
32 4ga2_A E3 SUMO-protein ligase 99.6 3.8E-15 1.3E-19 133.3 7.7 111 495-605 3-113 (150)
33 2dba_A Smooth muscle cell asso 99.6 7.9E-14 2.7E-18 123.1 16.1 119 485-603 24-145 (148)
34 2fbn_A 70 kDa peptidylprolyl i 99.6 9.4E-14 3.2E-18 130.2 17.1 119 486-604 35-169 (198)
35 2h6f_A Protein farnesyltransfe 99.5 5.4E-14 1.8E-18 145.8 15.9 133 466-603 113-246 (382)
36 2h6f_A Protein farnesyltransfe 99.5 3.8E-14 1.3E-18 147.0 14.0 122 484-605 161-288 (382)
37 1na0_A Designed protein CTPR3; 99.5 5E-13 1.7E-17 113.7 18.4 118 488-605 8-125 (125)
38 1kt0_A FKBP51, 51 kDa FK506-bi 99.5 8.3E-14 2.8E-18 148.5 15.7 120 485-604 264-398 (457)
39 3vtx_A MAMA; tetratricopeptide 99.5 3.2E-13 1.1E-17 124.5 17.5 135 466-605 21-155 (184)
40 2xev_A YBGF; tetratricopeptide 99.5 4.7E-13 1.6E-17 115.4 16.7 113 490-602 3-121 (129)
41 3vtx_A MAMA; tetratricopeptide 99.5 4.5E-13 1.6E-17 123.5 17.7 107 486-592 70-176 (184)
42 1a17_A Serine/threonine protei 99.5 7.5E-13 2.6E-17 119.2 18.4 115 486-600 10-124 (166)
43 4i17_A Hypothetical protein; T 99.5 4.2E-13 1.4E-17 128.5 16.9 116 489-604 7-130 (228)
44 1elr_A TPR2A-domain of HOP; HO 99.5 4.8E-13 1.7E-17 115.0 15.4 117 487-604 2-125 (131)
45 1ihg_A Cyclophilin 40; ppiase 99.5 2.5E-13 8.7E-18 140.4 15.4 119 486-604 220-354 (370)
46 1zu2_A Mitochondrial import re 99.5 1.2E-13 4.2E-18 122.1 10.2 102 500-601 13-135 (158)
47 4i17_A Hypothetical protein; T 99.4 6E-13 2E-17 127.4 13.8 116 489-604 42-166 (228)
48 2kck_A TPR repeat; tetratricop 99.4 3.4E-13 1.2E-17 112.5 10.4 104 487-590 4-110 (112)
49 3urz_A Uncharacterized protein 99.4 2.3E-12 7.7E-17 121.9 16.8 115 485-600 34-199 (208)
50 3as5_A MAMA; tetratricopeptide 99.4 1.1E-11 3.8E-16 113.2 20.5 120 486-605 39-158 (186)
51 3k9i_A BH0479 protein; putativ 99.4 2.5E-13 8.5E-18 115.7 8.7 101 501-601 2-105 (117)
52 3gyz_A Chaperone protein IPGC; 99.4 9.7E-14 3.3E-18 124.1 6.2 98 508-605 21-118 (151)
53 2e2e_A Formate-dependent nitri 99.4 1.9E-12 6.4E-17 118.6 14.7 114 486-599 41-157 (177)
54 2c2l_A CHIP, carboxy terminus 99.4 1.6E-12 5.4E-17 129.2 14.2 103 488-590 3-105 (281)
55 2fo7_A Synthetic consensus TPR 99.4 7.3E-12 2.5E-16 107.7 16.2 112 491-602 3-114 (136)
56 2if4_A ATFKBP42; FKBP-like, al 99.4 3.3E-13 1.1E-17 137.9 8.3 117 486-602 176-309 (338)
57 2vsy_A XCC0866; transferase, g 99.4 5.2E-12 1.8E-16 138.5 17.0 120 485-604 19-138 (568)
58 1wao_1 Serine/threonine protei 99.4 8.9E-13 3E-17 141.2 9.8 115 486-600 3-117 (477)
59 2pzi_A Probable serine/threoni 99.4 1.8E-12 6.2E-17 145.2 12.0 120 485-605 429-548 (681)
60 4gco_A Protein STI-1; structur 99.4 3.4E-12 1.2E-16 110.3 10.9 92 514-605 4-95 (126)
61 4abn_A Tetratricopeptide repea 99.4 4.3E-12 1.5E-16 135.9 14.1 116 489-604 170-305 (474)
62 3uq3_A Heat shock protein STI1 99.4 1.1E-11 3.9E-16 119.8 15.8 116 485-600 135-256 (258)
63 1hh8_A P67PHOX, NCF-2, neutrop 99.4 1.3E-11 4.3E-16 116.5 15.7 116 487-605 4-135 (213)
64 1xnf_A Lipoprotein NLPI; TPR, 99.3 2.3E-11 7.9E-16 119.1 18.0 114 485-598 39-152 (275)
65 3qky_A Outer membrane assembly 99.3 7.6E-12 2.6E-16 122.4 14.4 110 485-594 11-134 (261)
66 2q7f_A YRRB protein; TPR, prot 99.3 2.8E-11 9.5E-16 116.2 18.0 120 486-605 88-207 (243)
67 1hh8_A P67PHOX, NCF-2, neutrop 99.3 3.2E-11 1.1E-15 113.7 17.6 105 488-592 36-156 (213)
68 3qky_A Outer membrane assembly 99.3 8.3E-12 2.8E-16 122.2 14.0 153 450-604 13-198 (261)
69 3as5_A MAMA; tetratricopeptide 99.3 1.7E-11 5.7E-16 112.0 15.2 120 486-605 5-124 (186)
70 2q7f_A YRRB protein; TPR, prot 99.3 2.6E-11 8.7E-16 116.4 17.0 147 452-603 91-239 (243)
71 2vq2_A PILW, putative fimbrial 99.3 2.9E-11 1E-15 114.3 16.9 135 466-605 24-161 (225)
72 3uq3_A Heat shock protein STI1 99.3 2.3E-11 8E-16 117.6 16.3 119 487-605 77-221 (258)
73 3qou_A Protein YBBN; thioredox 99.3 1.8E-11 6E-16 122.0 15.5 119 487-605 115-269 (287)
74 2r5s_A Uncharacterized protein 99.3 9.2E-12 3.1E-16 114.2 12.3 147 453-605 7-158 (176)
75 2pzi_A Probable serine/threoni 99.3 1.3E-12 4.3E-17 146.4 7.5 116 485-601 463-578 (681)
76 4abn_A Tetratricopeptide repea 99.3 6.8E-12 2.3E-16 134.3 12.8 119 486-605 134-272 (474)
77 3u4t_A TPR repeat-containing p 99.3 3.4E-11 1.2E-15 117.9 16.7 117 488-604 73-189 (272)
78 1fch_A Peroxisomal targeting s 99.3 2.4E-11 8.1E-16 124.6 16.3 118 488-605 216-344 (368)
79 2vgx_A Chaperone SYCD; alterna 99.3 3.6E-12 1.2E-16 113.5 8.5 98 508-605 6-103 (148)
80 2ho1_A Type 4 fimbrial biogene 99.3 4.6E-11 1.6E-15 115.6 17.0 115 489-603 105-221 (252)
81 1w3b_A UDP-N-acetylglucosamine 99.3 1.7E-11 6E-16 127.1 14.7 120 486-605 268-387 (388)
82 2vq2_A PILW, putative fimbrial 99.3 5.6E-11 1.9E-15 112.3 16.7 120 485-604 72-195 (225)
83 3mkr_A Coatomer subunit epsilo 99.3 7.7E-11 2.6E-15 117.6 18.3 99 500-598 177-276 (291)
84 2l6j_A TPR repeat-containing p 99.3 2.9E-12 1E-16 107.1 6.6 95 488-582 3-103 (111)
85 2ho1_A Type 4 fimbrial biogene 99.3 3.9E-11 1.3E-15 116.1 15.5 121 485-605 67-189 (252)
86 1w3b_A UDP-N-acetylglucosamine 99.3 3.4E-11 1.2E-15 124.9 16.0 120 486-605 234-353 (388)
87 2yhc_A BAMD, UPF0169 lipoprote 99.3 2.3E-11 7.9E-16 116.3 13.6 120 486-605 38-198 (225)
88 4eqf_A PEX5-related protein; a 99.3 1.8E-11 6.3E-16 125.7 13.8 118 488-605 212-341 (365)
89 3cv0_A Peroxisome targeting si 99.3 6.7E-11 2.3E-15 118.8 16.5 119 487-605 170-300 (327)
90 2kat_A Uncharacterized protein 99.3 2.6E-11 8.8E-16 102.5 10.8 97 506-602 2-100 (115)
91 2fo7_A Synthetic consensus TPR 99.3 8.2E-11 2.8E-15 101.0 14.1 104 487-590 33-136 (136)
92 4eqf_A PEX5-related protein; a 99.3 3.8E-11 1.3E-15 123.3 14.1 117 489-605 177-295 (365)
93 3u4t_A TPR repeat-containing p 99.3 3.2E-11 1.1E-15 118.0 12.7 143 454-602 5-154 (272)
94 3hym_B Cell division cycle pro 99.2 5.4E-11 1.8E-15 119.6 14.5 117 486-602 190-315 (330)
95 3hym_B Cell division cycle pro 99.2 7.7E-11 2.7E-15 118.4 15.5 119 487-605 88-207 (330)
96 3ieg_A DNAJ homolog subfamily 99.2 8.8E-11 3E-15 119.3 16.1 111 488-598 2-115 (359)
97 2e2e_A Formate-dependent nitri 99.2 1.9E-11 6.4E-16 111.9 9.8 109 497-605 18-129 (177)
98 2yhc_A BAMD, UPF0169 lipoprote 99.2 6.8E-11 2.3E-15 113.0 13.6 107 489-595 4-134 (225)
99 2xcb_A PCRH, regulatory protei 99.2 2.2E-11 7.6E-16 107.3 9.0 96 510-605 5-100 (142)
100 1na3_A Designed protein CTPR2; 99.2 1.8E-10 6.3E-15 92.2 12.9 86 486-571 6-91 (91)
101 2y4t_A DNAJ homolog subfamily 99.2 2.2E-10 7.6E-15 120.9 17.2 117 483-599 20-139 (450)
102 2vsy_A XCC0866; transferase, g 99.2 1.8E-10 6E-15 126.3 15.7 110 485-594 53-165 (568)
103 1fch_A Peroxisomal targeting s 99.2 5.7E-10 1.9E-14 114.2 18.2 120 486-605 129-299 (368)
104 3ieg_A DNAJ homolog subfamily 99.2 3E-10 1E-14 115.3 16.0 116 488-603 36-166 (359)
105 1qqe_A Vesicular transport pro 99.2 2.2E-10 7.4E-15 114.3 13.5 120 486-605 74-213 (292)
106 1p5q_A FKBP52, FK506-binding p 99.1 4.6E-10 1.6E-14 114.4 14.4 100 487-586 194-294 (336)
107 2kc7_A BFR218_protein; tetratr 99.1 1E-10 3.5E-15 95.7 7.6 92 492-591 3-95 (99)
108 1a17_A Serine/threonine protei 99.1 6.8E-10 2.3E-14 99.5 13.8 101 486-586 44-146 (166)
109 3mkr_A Coatomer subunit epsilo 99.1 7.2E-10 2.5E-14 110.4 15.2 119 487-605 128-248 (291)
110 3edt_B KLC 2, kinesin light ch 99.1 2.4E-10 8.2E-15 111.8 11.5 121 485-605 39-183 (283)
111 3upv_A Heat shock protein STI1 99.1 4.4E-10 1.5E-14 96.4 11.9 86 520-605 1-86 (126)
112 1na3_A Designed protein CTPR2; 99.1 5.9E-10 2E-14 89.1 11.8 85 521-605 7-91 (91)
113 2y4t_A DNAJ homolog subfamily 99.1 1E-09 3.5E-14 115.8 17.2 120 486-605 57-191 (450)
114 3fp2_A TPR repeat-containing p 99.1 5.3E-10 1.8E-14 120.8 14.2 117 489-605 276-392 (537)
115 2gw1_A Mitochondrial precursor 99.1 8.4E-10 2.9E-14 118.3 15.7 106 486-592 3-108 (514)
116 2xpi_A Anaphase-promoting comp 99.1 1.3E-09 4.4E-14 119.5 17.3 120 486-605 370-489 (597)
117 2ond_A Cleavage stimulation fa 99.1 1E-09 3.5E-14 110.2 14.9 113 491-603 136-253 (308)
118 2xpi_A Anaphase-promoting comp 99.1 8.5E-10 2.9E-14 121.0 15.1 115 488-602 474-595 (597)
119 3dra_A Protein farnesyltransfe 99.1 3.9E-10 1.3E-14 112.5 11.1 121 484-604 62-193 (306)
120 3ma5_A Tetratricopeptide repea 99.1 6.3E-10 2.2E-14 91.5 10.5 70 519-588 3-72 (100)
121 1xnf_A Lipoprotein NLPI; TPR, 99.1 5.8E-10 2E-14 109.0 11.2 107 499-605 15-125 (275)
122 4g1t_A Interferon-induced prot 99.1 1.9E-09 6.4E-14 114.7 15.9 115 488-602 50-183 (472)
123 4gcn_A Protein STI-1; structur 99.1 3E-10 1E-14 98.0 7.9 84 521-604 6-96 (127)
124 3cv0_A Peroxisome targeting si 99.0 6E-10 2.1E-14 111.7 11.2 108 498-605 147-254 (327)
125 3edt_B KLC 2, kinesin light ch 99.0 7.5E-10 2.6E-14 108.2 11.6 102 485-586 81-198 (283)
126 2l6j_A TPR repeat-containing p 99.0 1.1E-09 3.7E-14 91.1 10.5 83 522-604 3-91 (111)
127 3sz7_A HSC70 cochaperone (SGT) 99.0 1.4E-09 4.9E-14 98.0 12.0 87 519-605 7-93 (164)
128 1ouv_A Conserved hypothetical 99.0 5.7E-09 2E-13 102.4 17.3 140 451-603 5-158 (273)
129 1qqe_A Vesicular transport pro 99.0 8.3E-10 2.9E-14 110.0 11.1 107 487-593 115-235 (292)
130 3fp2_A TPR repeat-containing p 99.0 2E-09 7E-14 116.2 15.0 117 488-605 242-358 (537)
131 3q49_B STIP1 homology and U bo 99.0 3.4E-09 1.2E-13 91.8 13.3 89 517-605 3-91 (137)
132 3dra_A Protein farnesyltransfe 99.0 3E-09 1E-13 106.1 14.5 121 485-605 99-234 (306)
133 1dce_A Protein (RAB geranylger 99.0 2E-09 6.8E-14 117.3 14.3 121 484-604 58-191 (567)
134 1hxi_A PEX5, peroxisome target 99.0 2.3E-09 7.9E-14 91.5 11.6 81 525-605 19-99 (121)
135 3k9i_A BH0479 protein; putativ 99.0 1.7E-09 5.9E-14 91.5 10.6 85 485-569 23-107 (117)
136 3q7a_A Farnesyltransferase alp 99.0 1.1E-09 3.8E-14 110.4 10.6 121 484-604 83-214 (349)
137 1zu2_A Mitochondrial import re 99.0 5.9E-10 2E-14 98.5 7.5 73 485-557 32-125 (158)
138 1dce_A Protein (RAB geranylger 99.0 2.3E-09 8E-14 116.7 13.5 120 485-604 103-239 (567)
139 2vyi_A SGTA protein; chaperone 99.0 3E-09 1E-13 90.7 11.3 88 486-573 43-130 (131)
140 2ond_A Cleavage stimulation fa 99.0 4.2E-09 1.4E-13 105.7 14.2 121 485-605 95-217 (308)
141 2fbn_A 70 kDa peptidylprolyl i 99.0 2.5E-09 8.4E-14 99.7 11.5 97 489-585 88-185 (198)
142 2kck_A TPR repeat; tetratricop 99.0 1.6E-09 5.6E-14 89.7 9.2 87 518-604 1-89 (112)
143 3ro3_A PINS homolog, G-protein 99.0 2.3E-09 8E-14 95.0 10.8 100 487-586 7-118 (164)
144 2gw1_A Mitochondrial precursor 99.0 1.4E-09 4.9E-14 116.5 11.0 111 488-598 371-490 (514)
145 3ulq_A Response regulator aspa 99.0 2.9E-09 9.9E-14 110.2 12.8 120 485-604 139-277 (383)
146 2hr2_A Hypothetical protein; a 99.0 3.5E-09 1.2E-13 93.8 11.4 83 523-605 11-116 (159)
147 2lni_A Stress-induced-phosphop 99.0 2.8E-09 9.6E-14 91.4 10.6 87 486-572 47-133 (133)
148 2r5s_A Uncharacterized protein 99.0 6.2E-09 2.1E-13 95.1 13.5 83 503-585 88-172 (176)
149 1wao_1 Serine/threonine protei 99.0 4.8E-10 1.7E-14 119.8 6.9 105 486-590 37-154 (477)
150 2if4_A ATFKBP42; FKBP-like, al 99.0 6.4E-10 2.2E-14 113.4 7.2 103 490-592 231-334 (338)
151 4a1s_A PINS, partner of inscut 99.0 3E-09 1E-13 110.8 12.3 120 485-604 44-179 (411)
152 3nf1_A KLC 1, kinesin light ch 99.0 2.3E-09 7.8E-14 106.6 11.0 121 485-605 65-209 (311)
153 4f3v_A ESX-1 secretion system 98.9 1.3E-08 4.4E-13 99.3 15.8 140 452-598 102-248 (282)
154 1ouv_A Conserved hypothetical 98.9 2.4E-08 8.3E-13 97.8 18.0 110 488-603 73-194 (273)
155 3nf1_A KLC 1, kinesin light ch 98.9 2.6E-09 8.7E-14 106.2 10.8 123 482-604 20-166 (311)
156 3rkv_A Putative peptidylprolyl 98.9 2.8E-09 9.7E-14 95.8 10.0 92 485-576 59-151 (162)
157 3dss_A Geranylgeranyl transfer 98.9 1.5E-08 5.2E-13 101.6 16.1 118 485-602 104-238 (331)
158 1kt0_A FKBP51, 51 kDa FK506-bi 98.9 4E-09 1.4E-13 112.2 12.5 92 488-579 316-407 (457)
159 2qfc_A PLCR protein; TPR, HTH, 98.9 1.5E-08 5.2E-13 100.7 16.0 118 488-605 114-250 (293)
160 3ma5_A Tetratricopeptide repea 98.9 4.1E-09 1.4E-13 86.6 9.6 86 485-570 3-90 (100)
161 4g1t_A Interferon-induced prot 98.9 7.2E-09 2.5E-13 110.1 13.9 118 485-602 90-220 (472)
162 3dss_A Geranylgeranyl transfer 98.9 2.1E-08 7E-13 100.7 15.9 122 483-604 58-192 (331)
163 3u3w_A Transcriptional activat 98.9 4.6E-09 1.6E-13 104.5 11.0 117 489-605 115-250 (293)
164 1ihg_A Cyclophilin 40; ppiase 98.9 8.6E-09 2.9E-13 106.3 12.9 94 486-579 270-363 (370)
165 3gw4_A Uncharacterized protein 98.9 5.9E-09 2E-13 96.8 10.1 101 487-587 24-137 (203)
166 3ulq_A Response regulator aspa 98.9 8.8E-09 3E-13 106.6 12.3 104 485-588 180-295 (383)
167 2ifu_A Gamma-SNAP; membrane fu 98.9 5.8E-09 2E-13 104.6 10.3 104 487-592 114-229 (307)
168 1pc2_A Mitochondria fission pr 98.9 2.3E-08 7.9E-13 87.3 12.1 100 504-603 13-117 (152)
169 3u3w_A Transcriptional activat 98.8 1E-08 3.6E-13 101.9 11.3 102 486-587 152-267 (293)
170 3q7a_A Farnesyltransferase alp 98.8 4.4E-08 1.5E-12 98.7 15.8 116 489-604 54-172 (349)
171 3ro2_A PINS homolog, G-protein 98.8 1.2E-08 4.2E-13 102.0 11.7 116 488-603 4-135 (338)
172 3rjv_A Putative SEL1 repeat pr 98.8 1.5E-08 5.2E-13 95.6 11.3 111 488-602 49-173 (212)
173 1na0_A Designed protein CTPR3; 98.8 3.4E-08 1.2E-12 83.2 12.4 85 487-571 41-125 (125)
174 3rjv_A Putative SEL1 repeat pr 98.8 1.3E-08 4.4E-13 96.1 10.4 112 487-603 16-137 (212)
175 2ifu_A Gamma-SNAP; membrane fu 98.8 1.3E-08 4.3E-13 102.2 10.5 103 486-589 73-187 (307)
176 1elw_A TPR1-domain of HOP; HOP 98.8 4.6E-08 1.6E-12 81.5 12.3 84 522-605 3-86 (118)
177 3sf4_A G-protein-signaling mod 98.8 1.9E-08 6.4E-13 104.0 11.9 117 487-603 7-139 (406)
178 3qou_A Protein YBBN; thioredox 98.8 3.6E-08 1.2E-12 97.8 13.3 99 487-585 183-283 (287)
179 2kc7_A BFR218_protein; tetratr 98.8 3.7E-08 1.3E-12 80.1 11.2 76 526-601 3-81 (99)
180 3sf4_A G-protein-signaling mod 98.8 1.2E-08 4.2E-13 105.4 10.3 119 486-604 184-320 (406)
181 3ro3_A PINS homolog, G-protein 98.8 3.1E-08 1.1E-12 87.6 11.4 104 486-589 46-161 (164)
182 3q15_A PSP28, response regulat 98.8 2.7E-08 9.4E-13 102.7 12.6 102 487-588 180-292 (378)
183 3q15_A PSP28, response regulat 98.8 4E-08 1.4E-12 101.4 13.7 139 466-605 198-350 (378)
184 2xev_A YBGF; tetratricopeptide 98.8 8E-08 2.7E-12 82.0 13.3 87 486-572 36-125 (129)
185 3bee_A Putative YFRE protein; 98.8 3.5E-08 1.2E-12 79.6 10.2 73 519-591 2-77 (93)
186 2dba_A Smooth muscle cell asso 98.8 5.2E-08 1.8E-12 85.1 12.2 89 517-605 22-113 (148)
187 2kat_A Uncharacterized protein 98.8 3.2E-08 1.1E-12 83.1 10.4 86 486-571 16-103 (115)
188 2qfc_A PLCR protein; TPR, HTH, 98.8 2.6E-07 8.9E-12 91.7 18.2 119 487-605 73-210 (293)
189 4a1s_A PINS, partner of inscut 98.7 1.2E-08 4E-13 106.2 8.1 120 486-605 220-357 (411)
190 2c2l_A CHIP, carboxy terminus 98.7 5.1E-08 1.8E-12 96.4 12.3 86 520-605 1-86 (281)
191 3ro2_A PINS homolog, G-protein 98.7 2.6E-08 9E-13 99.5 8.9 120 486-605 180-317 (338)
192 2ooe_A Cleavage stimulation fa 98.7 1.2E-07 4.2E-12 102.6 14.3 120 485-604 317-438 (530)
193 1elr_A TPR2A-domain of HOP; HO 98.7 6.6E-08 2.3E-12 82.2 9.5 85 521-605 2-93 (131)
194 4f3v_A ESX-1 secretion system 98.7 4.6E-08 1.6E-12 95.5 8.8 116 489-605 102-222 (282)
195 3gw4_A Uncharacterized protein 98.7 7.7E-08 2.6E-12 89.1 10.0 104 485-588 62-178 (203)
196 2v5f_A Prolyl 4-hydroxylase su 98.6 3.2E-07 1.1E-11 75.8 11.5 77 489-565 5-88 (104)
197 1klx_A Cysteine rich protein B 98.6 5.8E-07 2E-11 78.4 13.0 98 495-598 31-136 (138)
198 1hz4_A MALT regulatory protein 98.6 3.1E-07 1.1E-11 94.3 13.2 102 488-589 52-167 (373)
199 3ly7_A Transcriptional activat 98.6 5.9E-07 2E-11 90.4 14.5 105 488-593 195-346 (372)
200 3n71_A Histone lysine methyltr 98.5 1E-06 3.4E-11 93.8 15.8 107 489-595 309-436 (490)
201 2ooe_A Cleavage stimulation fa 98.5 4.7E-07 1.6E-11 97.9 13.4 113 486-598 269-397 (530)
202 2v5f_A Prolyl 4-hydroxylase su 98.5 1.1E-06 3.9E-11 72.4 12.1 80 522-601 4-90 (104)
203 3qww_A SET and MYND domain-con 98.5 1.5E-06 5.3E-11 90.8 15.1 106 495-600 304-430 (433)
204 3bee_A Putative YFRE protein; 98.4 8.4E-07 2.9E-11 71.4 9.0 72 485-556 2-76 (93)
205 1hz4_A MALT regulatory protein 98.4 9.2E-07 3.2E-11 90.7 10.7 118 487-604 12-148 (373)
206 2xm6_A Protein corresponding t 98.4 6.7E-06 2.3E-10 87.9 17.0 143 448-603 35-195 (490)
207 3qwp_A SET and MYND domain-con 98.3 3.1E-06 1.1E-10 88.6 13.4 109 489-597 287-416 (429)
208 3e4b_A ALGK; tetratricopeptide 98.3 2.7E-06 9.3E-11 90.0 13.2 107 491-602 178-294 (452)
209 2xm6_A Protein corresponding t 98.3 1E-05 3.4E-10 86.5 17.4 111 487-603 109-231 (490)
210 1nzn_A CGI-135 protein, fissio 98.3 6.2E-06 2.1E-10 69.3 12.0 102 502-603 14-120 (126)
211 3n71_A Histone lysine methyltr 98.3 1.2E-06 4E-11 93.2 9.6 109 482-590 344-468 (490)
212 1klx_A Cysteine rich protein B 98.3 4.8E-06 1.7E-10 72.5 11.3 93 503-603 9-105 (138)
213 1pc2_A Mitochondria fission pr 98.2 3.3E-06 1.1E-10 73.7 8.9 81 487-567 30-115 (152)
214 3e4b_A ALGK; tetratricopeptide 98.2 3.7E-06 1.3E-10 89.0 11.3 109 486-602 245-365 (452)
215 3u64_A Protein TP_0956; tetrat 98.1 6.8E-06 2.3E-10 79.3 9.1 85 505-589 179-272 (301)
216 3mv2_B Coatomer subunit epsilo 98.1 2.6E-05 8.9E-10 77.0 12.5 97 493-589 104-210 (310)
217 3mv2_B Coatomer subunit epsilo 98.1 5E-05 1.7E-09 74.9 14.0 143 456-604 106-268 (310)
218 3ffl_A Anaphase-promoting comp 98.0 3.2E-05 1.1E-09 67.8 9.5 113 489-602 20-166 (167)
219 1xi4_A Clathrin heavy chain; a 98.0 0.00012 4E-09 84.9 16.6 92 487-583 1103-1221(1630)
220 1xi4_A Clathrin heavy chain; a 97.9 5.5E-05 1.9E-09 87.5 12.9 106 490-603 1196-1326(1630)
221 1b89_A Protein (clathrin heavy 97.8 0.00014 4.9E-09 75.1 12.9 105 490-603 149-253 (449)
222 1y8m_A FIS1; mitochondria, unk 97.8 0.00053 1.8E-08 58.4 13.9 84 520-603 36-123 (144)
223 3o48_A Mitochondria fission 1 97.7 0.00031 1E-08 59.1 11.4 83 521-603 38-124 (134)
224 4b4t_Q 26S proteasome regulato 97.7 0.0001 3.5E-09 76.8 10.5 100 490-589 96-207 (434)
225 4b4t_Q 26S proteasome regulato 97.6 5.9E-05 2E-09 78.6 7.2 96 490-585 56-163 (434)
226 3qwp_A SET and MYND domain-con 97.6 0.00025 8.7E-09 74.0 10.7 89 482-570 322-426 (429)
227 1b89_A Protein (clathrin heavy 97.6 0.00012 3.9E-09 75.7 7.7 98 490-604 123-220 (449)
228 3qww_A SET and MYND domain-con 97.5 0.00016 5.5E-09 75.5 8.6 79 482-560 333-424 (433)
229 1nzn_A CGI-135 protein, fissio 97.5 0.00047 1.6E-08 57.8 8.8 80 488-567 34-118 (126)
230 3ly7_A Transcriptional activat 97.3 0.0008 2.7E-08 67.7 10.2 72 486-558 274-345 (372)
231 4h7y_A Dual specificity protei 97.3 0.003 1E-07 54.1 11.8 112 485-597 9-134 (161)
232 3u64_A Protein TP_0956; tetrat 97.2 0.001 3.4E-08 64.3 9.3 70 487-556 197-273 (301)
233 1y8m_A FIS1; mitochondria, unk 97.2 0.0039 1.3E-07 53.0 11.6 80 488-567 38-121 (144)
234 3o48_A Mitochondria fission 1 97.2 0.0038 1.3E-07 52.4 11.1 81 489-569 40-124 (134)
235 4e6h_A MRNA 3'-END-processing 97.1 0.0028 9.5E-08 70.0 12.2 99 488-586 342-463 (679)
236 4e6h_A MRNA 3'-END-processing 96.8 0.0053 1.8E-07 67.7 11.8 116 488-603 433-553 (679)
237 3ffl_A Anaphase-promoting comp 96.7 0.0073 2.5E-07 52.9 9.0 81 486-567 60-165 (167)
238 2uy1_A Cleavage stimulation fa 96.4 0.046 1.6E-06 58.0 14.8 111 488-600 212-363 (493)
239 2ff4_A Probable regulatory pro 96.3 0.056 1.9E-06 55.3 14.8 62 524-585 172-233 (388)
240 1zbp_A Hypothetical protein VP 95.8 0.1 3.4E-06 49.6 12.4 61 497-557 5-65 (273)
241 4gns_B Protein CSD3, chitin bi 95.2 0.042 1.4E-06 60.7 8.6 61 523-583 337-397 (754)
242 2uy1_A Cleavage stimulation fa 95.0 0.26 8.8E-06 52.2 13.8 95 488-583 285-380 (493)
243 4g26_A Pentatricopeptide repea 94.7 0.44 1.5E-05 50.5 14.8 98 489-586 105-204 (501)
244 1ya0_A SMG-7 transcript varian 94.7 0.14 4.9E-06 53.8 10.8 82 489-570 152-233 (497)
245 4h7y_A Dual specificity protei 94.6 0.41 1.4E-05 41.1 11.2 87 484-572 56-142 (161)
246 1ya0_A SMG-7 transcript varian 94.5 0.2 6.9E-06 52.7 11.3 79 524-602 153-231 (497)
247 4gns_B Protein CSD3, chitin bi 94.3 0.12 4.2E-06 57.0 9.5 62 488-549 336-397 (754)
248 3kae_A CDC27, possible protein 93.8 0.93 3.2E-05 39.5 11.9 100 490-594 34-151 (242)
249 3txn_A 26S proteasome regulato 93.1 0.96 3.3E-05 45.9 13.0 95 493-587 103-211 (394)
250 4b4t_R RPN7, 26S proteasome re 92.9 0.49 1.7E-05 48.9 10.9 99 490-588 132-239 (429)
251 4b4t_P 26S proteasome regulato 92.6 1.7 5.8E-05 45.1 14.5 102 485-586 133-247 (445)
252 1zbp_A Hypothetical protein VP 92.4 0.55 1.9E-05 44.6 9.4 63 532-594 6-68 (273)
253 4g26_A Pentatricopeptide repea 92.0 1.9 6.6E-05 45.5 14.3 100 503-602 84-186 (501)
254 3kae_A CDC27, possible protein 91.8 6.1 0.00021 34.5 15.2 101 489-589 62-240 (242)
255 2ff4_A Probable regulatory pro 90.4 0.92 3.1E-05 46.2 9.5 62 490-551 172-233 (388)
256 4b4t_S RPN3, 26S proteasome re 89.0 0.41 1.4E-05 50.1 5.4 104 488-591 180-304 (523)
257 3mkq_B Coatomer subunit alpha; 87.9 3.5 0.00012 36.5 10.0 44 500-548 16-59 (177)
258 3mkq_A Coatomer beta'-subunit; 87.8 1.9 6.5E-05 48.1 10.6 45 500-549 663-707 (814)
259 3spa_A Mtrpol, DNA-directed RN 87.4 8.7 0.0003 43.7 15.0 100 487-587 125-231 (1134)
260 3mkq_B Coatomer subunit alpha; 84.6 7.8 0.00027 34.2 10.5 80 489-581 34-113 (177)
261 3mkq_A Coatomer beta'-subunit; 84.4 5.3 0.00018 44.4 12.0 83 489-579 681-771 (814)
262 4fhn_B Nucleoporin NUP120; pro 75.9 7.8 0.00027 45.4 9.8 92 492-583 845-964 (1139)
263 3lpz_A GET4 (YOR164C homolog); 74.4 44 0.0015 32.7 13.2 95 487-581 33-160 (336)
264 4b4t_S RPN3, 26S proteasome re 73.4 5.8 0.0002 41.4 6.9 69 486-556 228-303 (523)
265 3txn_A 26S proteasome regulato 72.8 16 0.00054 36.9 9.8 61 527-587 103-169 (394)
266 4gq2_M Nucleoporin NUP120; bet 72.2 27 0.00094 39.8 12.9 94 495-592 816-933 (950)
267 2wpv_A GET4, UPF0363 protein Y 72.0 46 0.0016 32.3 12.6 27 555-581 132-158 (312)
268 1qsa_A Protein (soluble lytic 71.3 17 0.0006 39.1 10.4 97 488-585 251-347 (618)
269 4fhn_B Nucleoporin NUP120; pro 71.3 22 0.00075 41.6 12.1 92 495-590 818-932 (1139)
270 2crb_A Nuclear receptor bindin 70.9 7.6 0.00026 29.8 5.2 32 486-517 12-43 (97)
271 2w2u_A Hypothetical P60 katani 68.5 8.5 0.00029 29.3 5.2 32 487-518 17-48 (83)
272 3u84_A Menin; MLL, JUND, ledgf 67.2 84 0.0029 31.5 13.0 105 482-601 250-368 (550)
273 2ijq_A Hypothetical protein; s 67.2 34 0.0011 29.6 9.3 62 491-552 34-104 (161)
274 2v6y_A AAA family ATPase, P60 65.7 10 0.00035 28.8 5.2 30 488-517 10-39 (83)
275 4b4t_R RPN7, 26S proteasome re 64.3 13 0.00045 38.1 7.4 65 522-586 130-197 (429)
276 1wy6_A Hypothetical protein ST 61.7 30 0.001 29.1 7.5 51 500-550 102-152 (172)
277 3re2_A Predicted protein; meni 57.6 96 0.0033 30.4 11.3 102 484-600 230-345 (472)
278 4a5x_A MITD1, MIT domain-conta 57.5 17 0.0006 27.7 5.2 31 488-518 15-45 (86)
279 3ax2_A Mitochondrial import re 57.1 27 0.00092 25.7 5.8 34 492-525 20-53 (73)
280 1wfd_A Hypothetical protein 15 56.3 18 0.00062 28.1 5.2 33 486-518 12-44 (93)
281 2v6x_A Vacuolar protein sortin 56.1 19 0.00064 27.4 5.2 33 486-518 10-42 (85)
282 3ax2_A Mitochondrial import re 55.5 31 0.0011 25.4 5.9 28 528-555 22-49 (73)
283 3t5v_B Nuclear mRNA export pro 54.4 24 0.00082 36.3 7.2 63 494-556 181-254 (455)
284 1wy6_A Hypothetical protein ST 53.9 60 0.002 27.3 8.0 53 534-586 102-154 (172)
285 2cpt_A SKD1 protein, vacuolar 52.2 18 0.00062 29.5 4.7 31 487-517 16-46 (117)
286 4gq4_A Menin; tumor suppressor 51.1 1.8E+02 0.0062 29.2 12.2 29 556-584 302-330 (489)
287 2crb_A Nuclear receptor bindin 50.1 26 0.0009 26.9 4.9 28 523-550 15-42 (97)
288 2w2u_A Hypothetical P60 katani 49.9 21 0.00071 27.1 4.4 18 534-551 30-47 (83)
289 3t5x_A PCI domain-containing p 49.1 32 0.0011 31.0 6.4 82 486-575 11-97 (203)
290 2v6y_A AAA family ATPase, P60 48.9 22 0.00075 26.9 4.4 31 506-551 9-39 (83)
291 3t5x_A PCI domain-containing p 48.0 41 0.0014 30.3 7.0 35 523-557 14-48 (203)
292 2ijq_A Hypothetical protein; s 45.9 1E+02 0.0035 26.5 8.7 60 527-586 36-104 (161)
293 2cfu_A SDSA1; SDS-hydrolase, l 44.8 34 0.0012 37.2 6.9 49 489-537 449-497 (658)
294 3spa_A Mtrpol, DNA-directed RN 43.4 1.7E+02 0.0058 33.5 12.1 63 523-586 127-194 (1134)
295 2vkj_A TM1634; membrane protei 42.5 57 0.002 24.8 5.6 33 487-519 51-83 (106)
296 3t5v_B Nuclear mRNA export pro 41.8 45 0.0015 34.3 6.9 36 487-522 218-254 (455)
297 2cfu_A SDSA1; SDS-hydrolase, l 41.7 41 0.0014 36.6 6.9 51 523-573 449-499 (658)
298 2cwy_A Hypothetical protein TT 40.8 62 0.0021 25.0 6.0 56 494-551 6-67 (94)
299 1qsa_A Protein (soluble lytic 40.6 1.1E+02 0.0038 32.8 10.0 114 491-605 216-333 (618)
300 2rpa_A Katanin P60 ATPase-cont 39.7 31 0.0011 25.7 3.9 31 488-518 11-41 (78)
301 4gq2_M Nucleoporin NUP120; bet 38.3 66 0.0022 36.6 8.3 67 492-558 843-933 (950)
302 4b4t_P 26S proteasome regulato 36.8 1.5E+02 0.005 30.3 10.0 70 483-552 171-247 (445)
303 3mv2_A Coatomer subunit alpha; 35.1 3.2E+02 0.011 26.4 15.0 103 492-594 117-244 (325)
304 2pmr_A Uncharacterized protein 34.5 47 0.0016 25.3 4.2 29 486-514 36-64 (87)
305 1om2_A Protein (mitochondrial 34.3 48 0.0016 25.8 4.3 30 493-522 24-53 (95)
306 1om2_A Protein (mitochondrial 32.2 58 0.002 25.3 4.4 29 527-555 24-52 (95)
307 3esl_A Checkpoint serine/threo 30.2 3E+02 0.01 24.6 12.4 72 483-555 74-147 (202)
308 3re2_A Predicted protein; meni 29.8 1.2E+02 0.0042 29.7 7.1 63 489-551 255-324 (472)
309 2wvi_A Mitotic checkpoint seri 29.8 2.7E+02 0.0091 23.9 10.0 67 483-555 60-128 (164)
310 3mkr_B Coatomer subunit alpha; 28.5 4.1E+02 0.014 25.6 13.8 99 493-591 106-232 (320)
311 3esl_A Checkpoint serine/threo 27.9 3.3E+02 0.011 24.3 12.7 100 488-588 32-146 (202)
312 2o8p_A 14-3-3 domain containin 27.8 3.5E+02 0.012 24.6 13.6 65 487-551 118-196 (227)
313 4b4t_O 26S proteasome regulato 27.0 3.6E+02 0.012 26.7 10.8 89 498-586 85-198 (393)
314 1wfd_A Hypothetical protein 15 26.6 1.1E+02 0.0037 23.5 5.2 14 505-518 12-25 (93)
315 4a1g_A Mitotic checkpoint seri 26.5 94 0.0032 26.5 5.2 67 484-556 66-134 (152)
316 2oo2_A Hypothetical protein AF 26.4 1.5E+02 0.0051 22.5 5.7 31 485-515 31-61 (86)
317 2dl1_A Spartin; SPG20, MIT, st 26.4 43 0.0015 27.0 2.9 44 503-554 17-60 (116)
318 4a1g_A Mitotic checkpoint seri 26.0 3E+02 0.01 23.3 8.7 48 542-589 84-133 (152)
319 2rpa_A Katanin P60 ATPase-cont 25.0 63 0.0022 24.0 3.4 26 560-585 15-40 (78)
320 2cwy_A Hypothetical protein TT 24.8 1.6E+02 0.0056 22.6 6.0 56 528-585 6-67 (94)
321 3lpz_A GET4 (YOR164C homolog); 24.6 4.9E+02 0.017 25.2 15.0 115 488-602 135-293 (336)
322 2dl1_A Spartin; SPG20, MIT, st 24.5 99 0.0034 24.9 4.7 31 487-517 20-50 (116)
323 2cpt_A SKD1 protein, vacuolar 23.6 2E+02 0.0069 23.1 6.5 14 505-518 15-28 (117)
324 2wpv_A GET4, UPF0363 protein Y 22.6 1.8E+02 0.006 28.1 7.1 103 463-585 113-216 (312)
325 4a5x_A MITD1, MIT domain-conta 22.3 1.3E+02 0.0045 22.7 4.9 16 568-583 27-42 (86)
326 3mcx_A SUSD superfamily protei 22.2 2E+02 0.0068 29.5 8.0 56 459-518 176-231 (477)
327 4aez_C MAD3, mitotic spindle c 22.2 3.8E+02 0.013 24.3 8.7 81 483-569 114-196 (223)
328 4gq4_A Menin; tumor suppressor 22.2 2E+02 0.0067 28.9 7.1 76 489-564 262-350 (489)
329 3myv_A SUSD superfamily protei 20.8 1.8E+02 0.0063 29.6 7.3 29 557-585 190-218 (454)
330 3myv_A SUSD superfamily protei 20.4 1.9E+02 0.0065 29.4 7.3 56 458-517 163-218 (454)
331 3u84_A Menin; MLL, JUND, ledgf 20.1 1.6E+02 0.0055 29.5 6.0 63 489-551 277-346 (550)
332 2yhe_A SEC-alkyl sulfatase; hy 25.1 23 0.00077 38.6 0.0 52 489-540 461-512 (668)
No 1
>2dc0_A Probable amidase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Thermus thermophilus}
Probab=100.00 E-value=1.3e-91 Score=736.81 Aligned_cols=406 Identities=28% Similarity=0.331 Sum_probs=342.7
Q ss_pred hhHHHHHHHHHhhcCcccCCCCcCceeeecccCCCCCCC-------CCCCCCCCCCceEEEeeccCCCCcccCCCchhhh
Q 007401 27 GFVVLAETLRRRRNPKLNGRVDFGAFLERFELIPFPQPP-------PPAARQPLAGLKFAIKDVFDVKGYVTGFGSPDWK 99 (605)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~a~~~a~-------~~~~~gpL~Gvp~~vKD~~~~~G~~tt~Gs~~~~ 99 (605)
+.+|++|+++.+++||++.|| +|||++..+++++++|+ .++..||||||||+|||||+++|++||+||+.|
T Consensus 13 g~~s~~el~~a~l~ri~~~~~-lna~~~~~~~~Al~~A~~~d~~~~~g~~~gpL~GvPi~vKD~~~v~G~~tt~Gs~~~- 90 (434)
T 2dc0_A 13 GRTTPLALLEEALERAKAFQD-RNALAYLDEEAARKEALALTEELRRGQVRGPLHGLPLTVKDLFPVKGMPTRAGTKAP- 90 (434)
T ss_dssp TSCCHHHHHHHHHHHHHHTGG-GCCEEEECHHHHHHHHHHHHHHHHTTCCCSTTTTCEEEEETTSCBTTBCCCTTCSSC-
T ss_pred CCCCHHHHHHHHHHHHHHhCC-CcEEEEcCHHHHHHHHHHHHHHHhcCCCCCCcCCeeEEEEeccccCCcccCCCCccc-
Confidence 449999999999999999999 99999998877766553 355679999999999999999999999999998
Q ss_pred hcCCCCCCChHHHHHHHhCCCeEeeecccccccccCCCCCCCCCCCCCCCCCCCCCCCCchHHHHHHHhcCCceeeccCC
Q 007401 100 RDHHEAERTAVVVTLLLKNGATCIGKTVLDEFAFGITGENKHYGTPVNPQMPSHIPGGSSSGSAVAVAAQLVDFALGTDT 179 (605)
Q Consensus 100 ~~~~~~~~da~~V~rL~~aGai~~GKt~~~e~~~~~~~~n~~~G~~~NP~~~~~~~GGSSgGsaaaVAag~~~~a~GtD~ 179 (605)
. .++.+||++|+|||+|||||+||||||||+++.+|+|++||+|+||||++|+|||||||||||||+|++|+|+||||
T Consensus 91 ~--~~a~~dA~vV~rL~~aGAii~GKTn~~Efa~~~~~~n~~~G~t~NP~~~~~~pGGSSgGsAaaVAag~~~~alGtDt 168 (434)
T 2dc0_A 91 L--PPLPEEARAVRRLREAGALLFAKTNMHEIALGITGENPWTGPVRNAVDPSRQAGGSSGGSAVAVALGIGLASLGTDT 168 (434)
T ss_dssp C--CCCCSSCHHHHHHHHTTCEEEEEECCSGGGCCSSCCCTTTCCCBCSSCTTBBCCSSSHHHHHHHHHTSSSCEEEECS
T ss_pred C--CCCCCCHHHHHHHHHCCCEEEEEeChhHHhcCCCCCCCCCCCCCCCCCCCCCCcccHHHHHHHHHcCCCceeeecCC
Confidence 3 44489999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccchhhhhcccccccCCCCCccCCCCccCCCCCccccccccCHHHHHHHHHHHccCCCCCc--ccCceeeeccchhhh
Q 007401 180 IGCVRVPASFCGILGYRPSHGTVSMIGVLPNSQSLDTVGLLARNASILHRVGHVLLQLNAVEP--RRARRLIFADDIFQL 257 (605)
Q Consensus 180 gGSiR~PAa~~Gv~GlkPt~G~v~~~G~~p~~~~~d~~G~~ar~~~d~~~v~~~~~~~~~~~~--~~~~~l~~~~~~~~~ 257 (605)
|||||+||+||||||||||+||||+.|++|+++++|++|||+||++|++.+++++.+. ..++ ..+.++.+..+.+.
T Consensus 169 gGSIRiPAa~cGv~GlKPT~G~vs~~g~~~~~~s~d~~Gp~arsv~D~a~~l~~l~g~-~~d~~~~~~lrig~~~~~~~- 246 (434)
T 2dc0_A 169 GGSIRIPAGFNGVVGFKPSYGRVSLEGALPLSRSTDHAGPLTRSVRDAHFLTEILAGE-SIPLEGVQNPVFGVPLDFLE- 246 (434)
T ss_dssp SSTTHHHHHHHTCEEEECSTTSSCCTTSCCSCTTTCCEEEEESSHHHHHHHHHHHHTS-CCCCCCCCSCEEEECHHHHT-
T ss_pred ChhhhhhHHhCCCEEEECCCCCCCCCCCCCCCCccCeeCcccCCHHHHHHHHHHHhCC-CCCcccccCCEEEEECcccc-
Confidence 9999999999999999999999999999999999999999999999999999999876 3332 23346666554431
Q ss_pred cCCchhhHHHHHHHHHHHHhCCCCCccccccccccc-cCcchhhhhhcCCCCCCchhHHHHHHHHHHHhhhhhhHhhHHH
Q 007401 258 SKVPKLKTIHVISKAIESLSGYQNPEHMNVGQYIAS-NVPSLKGLRAQSTSPENGTATLKALSSVMLSLQRYEFKTIYEE 336 (605)
Q Consensus 258 ~~~~~~~~~~~~~~a~~~l~g~~~~~~~~l~~~v~~-~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~e~~~~~~~ 336 (605)
...++++.++++++++.|+..+ +.|++ ..| +.+. ...+..+...|....+..
T Consensus 247 -~~~~~~v~~a~~~a~~~L~~~G--------~~v~~~~~p-~~~~-----------------~~~~~~~~~~e~~~~~~~ 299 (434)
T 2dc0_A 247 -GRLGVEVRKAFTRLLEDLPALR--------AEVREVSLP-LEGV-----------------YEVYTRLVRYEAARIHEK 299 (434)
T ss_dssp -TCSCHHHHHHHHHHHHHTTTTT--------CEEEECCCC-CTTH-----------------HHHHHHHHHHHHHHHSHH
T ss_pred -CCCCHHHHHHHHHHHHHHHHCC--------CEEEEeCCC-cHHH-----------------HHHHHHHHHHHHHHHHHH
Confidence 2346789999999999996433 33322 223 2211 111222334455556666
Q ss_pred HHHhcCCCCChhHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEeCCCCCCccCCccccc---c-hhhhh
Q 007401 337 WVKSAKPRLGYNVFERVLEAINTTQDNIKILYKVRNEMRAALQRLLKDDKILVIPTVSDPPLKLNTKKTY---S-AEFHD 412 (605)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~a~~~r~~~~~~~~~~~~~~Dvll~Pt~~~~ap~~~~~~~~---~-~~~~~ 412 (605)
++......++|.++.+++.+..++..+|.++++.|..+++.+.++|+++|+||+||+|.+||++++.... . .....
T Consensus 300 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~r~~~~~~~~~~~~~~D~ll~Pt~~~~a~~~~~~~~~~~~~~~~~~~ 379 (434)
T 2dc0_A 300 ALKEHPEGFSPQVREALLAGLALTEKDYRDAVAEREALRLELVKALRGVDALLLPVQPLPAPPLGTEEVELESGRKGHRE 379 (434)
T ss_dssp HHHHCGGGSCHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTTSSEEEEESCSSSCCBTTCCEEEETTEEEEHHH
T ss_pred HHHhchhhcCHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHhcCCEEEECCCCCCCccCcccccccccchhhhhh
Confidence 6666667799999999999999999999999999999999999999999999999999999999864211 0 11112
Q ss_pred chhhhcccccccCCceeeeecccCCCCCceeEEeeccCCchhHHhHHHHHHhH
Q 007401 413 RTLVLSSIGSMSGCCQVAIPIGKYNEHPISISFITYHGGDKFLLDTVLDLYDS 465 (605)
Q Consensus 413 ~~~~~t~~~nl~G~PaisvP~G~~~glp~g~~~~~~~~~d~~ll~~a~~l~~~ 465 (605)
.+..||.++|++|+|++|||+|+.+|+|+|+|+++++++|..+++++..+++.
T Consensus 380 ~~~~~t~~~nl~G~PaisvP~g~~~GlPvGvqlvg~~~~d~~lL~~A~~lE~~ 432 (434)
T 2dc0_A 380 AFITLTLPFSLLGVPTLALPFAKVEGMPVGLQVVGAYGEDGKVLALGGWLEAR 432 (434)
T ss_dssp HHHTTTHHHHHTTCCEEEEEEEEETTEEEEEEEECCTTCHHHHHHHHHHHHTT
T ss_pred hhhhhhhhhhhhCCCeEEEecCCCCCCCeEEEEECCCCchHHHHHHHHHHHHh
Confidence 33568999999999999999999899999999999999999999999988763
No 2
>3ip4_A Glutamyl-tRNA(Gln) amidotransferase subunit A; multi protein complex, ligase, ATP-binding, nucleotide-bindi protein biosynthesis; 1.90A {Staphylococcus aureus subsp} SCOP: c.117.1.1 PDB: 2df4_A 2dqn_A* 2g5h_A 2g5i_A* 2f2a_A
Probab=100.00 E-value=2.9e-90 Score=737.50 Aligned_cols=424 Identities=23% Similarity=0.305 Sum_probs=333.4
Q ss_pred HHHHHhhhh-----HHHHHHHHHhhcCcccCCCCcCceeeecccCCCCCCC--------CCCCCCCCCCceEEEeeccCC
Q 007401 20 VIGVSVVGF-----VVLAETLRRRRNPKLNGRVDFGAFLERFELIPFPQPP--------PPAARQPLAGLKFAIKDVFDV 86 (605)
Q Consensus 20 ~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~a~~~a~--------~~~~~gpL~Gvp~~vKD~~~~ 86 (605)
.|+++|+++ +|++|+++.+++||++.||.+|||++.++++++++|+ .++. ||||||||+|||||++
T Consensus 6 ~~~~~l~~~i~~g~~s~~el~~a~l~ri~~~~~~lna~~~~~~~~Al~~A~~~d~~~~~~g~~-gpL~GvPi~vKD~~~v 84 (485)
T 3ip4_A 6 ESVENLLTLIKDKKIKPSDVVKDIYDAIEETDPTIKSFLALDKENAIKKAQELDELQAKDQMD-GKLFGIPMGIKDNIIT 84 (485)
T ss_dssp CCHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHCCEEEECHHHHHHHHHHHHHHHHTTCCC-STTTTCEEEEETTBCB
T ss_pred CCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCceEEEEECHHHHHHHHHHHHHHHHhcCCC-CCcCCCEEEEEcCccc
Confidence 356666644 9999999999999999999999999998877665542 3445 9999999999999999
Q ss_pred CCcccCCCchhhhhcCCCCCCChHHHHHHHhCCCeEeeecccccccccCCCCCCCCCCCCCCCCCCCCCCCCchHHHHHH
Q 007401 87 KGYVTGFGSPDWKRDHHEAERTAVVVTLLLKNGATCIGKTVLDEFAFGITGENKHYGTPVNPQMPSHIPGGSSSGSAVAV 166 (605)
Q Consensus 87 ~G~~tt~Gs~~~~~~~~~~~~da~~V~rL~~aGai~~GKt~~~e~~~~~~~~n~~~G~~~NP~~~~~~~GGSSgGsaaaV 166 (605)
+|++||+||+.+.+ .++.+||++|+|||+|||||+||||||||+++.+|+|++||+|+||||++|+||||||||||||
T Consensus 85 ~G~~tt~Gs~~~~~--~~~~~dA~vV~rLr~AGAii~GKTn~~Efa~~~~t~n~~~G~t~NP~~~~~~pGGSSgGsAaaV 162 (485)
T 3ip4_A 85 NGLETTCASKMLEG--FVPIYESTVMEKLHKENAVLIGKLNMDEFAMGGSTETSYFKKTVNPFDHKAVPGGSSGGSAAAV 162 (485)
T ss_dssp TTBCCCTTSGGGTT--CCCSSCCHHHHHHHHTTCEEEEEECCSGGGCCSSSTTCSSCCCCBTTBTTBCCCSSSHHHHHHH
T ss_pred CCCccCCCChhhcC--CCCCCCcHHHHHHHHCCCEEEEecCCcccccCCCCCCCCCCCcCCccccCcCCCCCccHHHHHh
Confidence 99999999999875 6788999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCceeeccCCCCccchhhhhcccccccCCCCCccCCCCccCCCCCccccccccCHHHHHHHHHHHccCCCCCc----
Q 007401 167 AAQLVDFALGTDTIGCVRVPASFCGILGYRPSHGTVSMIGVLPNSQSLDTVGLLARNASILHRVGHVLLQLNAVEP---- 242 (605)
Q Consensus 167 Aag~~~~a~GtD~gGSiR~PAa~~Gv~GlkPt~G~v~~~G~~p~~~~~d~~G~~ar~~~d~~~v~~~~~~~~~~~~---- 242 (605)
|+|++|+|+|||||||||+||+||||||||||+||||+.|++|+++++|++|||+||++|++.+++++.+.+..++
T Consensus 163 Aag~~~~alGtDtgGSIRiPAa~cGv~GlKPT~Grvs~~G~~p~~~sld~~Gp~aRsv~D~a~~l~vl~g~d~~d~~~~~ 242 (485)
T 3ip4_A 163 AAGLVPLSLGSDTGGSIRQPAAYCGVVGMKPTYGRVSRFGLVAFASSLDQIGPLTRNVKDNAIVLEAISGADVNDSTSAP 242 (485)
T ss_dssp HTTSCSEEEEECSSSTTHHHHHHTTCEEEECCTTSBCCTTBCCSCTTTCCEEEEESSHHHHHHHHHHHBSCCTTCTTSCC
T ss_pred hcCCCceeeeccCCcchhhhHHHhCCeeecCCCCcccCCCCCCcccccceeccccCCHHHHHHHHHHhcCCCcccccccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999987543221
Q ss_pred -------------ccCceeeeccchhhhcCCchhhHHHHHHHHHHHHhCCCCCcccccccccc-ccCcchhhhhhcCCCC
Q 007401 243 -------------RRARRLIFADDIFQLSKVPKLKTIHVISKAIESLSGYQNPEHMNVGQYIA-SNVPSLKGLRAQSTSP 308 (605)
Q Consensus 243 -------------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~~l~g~~~~~~~~l~~~v~-~~~p~~~~~~~~~~~~ 308 (605)
..+.|+.+..+.+. ...++++.++++++++.|+..+ +.|+ ..+|.+.+....+
T Consensus 243 ~~~~~~~~~~~~~~~~lrigv~~~~~~--~~~~~~v~~a~~~a~~~L~~~G--------~~v~~~~~p~~~~~~~~~--- 309 (485)
T 3ip4_A 243 VDDVDFTSEIGKDIKGLKVALPKEYLG--EGVADDVKEAVQNAVETLKSLG--------AVVEEVSLPNTKFGIPSY--- 309 (485)
T ss_dssp CCCCCCSTTTTCCCTTCEEEEEGGGGS--TTSCHHHHHHHHHHHHHHHHTT--------CEEEEECCTTGGGHHHHH---
T ss_pred cCccchhhhhccCccCcEEEEECCccc--CCCCHHHHHHHHHHHHHHHHCC--------CEEEEeCCCcHHHHHHHH---
Confidence 12345666555432 2346789999999999986332 2222 2233322111100
Q ss_pred CCchhHHHHHHHHHHHhhhhh----------hHhhHHHHHHhcCCCCChhHHHHHHHHhc-----CCHHHHHHHHHHHHH
Q 007401 309 ENGTATLKALSSVMLSLQRYE----------FKTIYEEWVKSAKPRLGYNVFERVLEAIN-----TTQDNIKILYKVRNE 373 (605)
Q Consensus 309 ~~~~~~~~~~~~~~~~l~~~e----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~s~~~~~~a~~~r~~ 373 (605)
......+....+..+. ....++.+.......+++.++.++..+.. ....+|.++++.|..
T Consensus 310 -----~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~a~~~r~~ 384 (485)
T 3ip4_A 310 -----YVIASSEASSNLSRFDGIRYGYHSKEAHSLEELYKMSRSEGFGKEVKRRIFLGTFALSSGYYDAYYKKSQKVRTL 384 (485)
T ss_dssp -----HHHHHHHHHHHTTTCSSSSSSCCCTTCCSHHHHHHHHHHHHSCHHHHHHHHHHHHHHSTTTTTTTHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHHhhhhhhccccccccccHHHHHHhhhhhhcCHHHHHHHHhccccccchhhHHHHHHHHHHHHH
Confidence 0000011111111100 00011222222234577888887776542 222458899999999
Q ss_pred HHHHHHHHhCCCcEEEEeCCCCCCccCCcccccchhhhhchhhhcccccccCCceeeeecccCCCCCceeEEeeccCCch
Q 007401 374 MRAALQRLLKDDKILVIPTVSDPPLKLNTKKTYSAEFHDRTLVLSSIGSMSGCCQVAIPIGKYNEHPISISFITYHGGDK 453 (605)
Q Consensus 374 ~~~~~~~~~~~~Dvll~Pt~~~~ap~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~G~~~glp~g~~~~~~~~~d~ 453 (605)
+++.+.++|+++|+||+||+|.+||++++......... ....||.++|++|+|++|||+|+.+|+|+|+|+++++++|.
T Consensus 385 ~~~~~~~~~~~~D~ll~Pt~~~~a~~~~~~~~~~~~~~-~~~~~t~~~nl~G~PaisvP~g~~~GlPvGlqlvg~~~~d~ 463 (485)
T 3ip4_A 385 IKNDFDKVFENYDVVVGPTAPTTAFNLGEEIDDPLTMY-ANDLLTTPVNLAGLPGISVPCGQSNGRPIGLQFIGKPFDEK 463 (485)
T ss_dssp HHHHHHHHHTTCSEEEEESSSSSCCBTTTSTTCHHHHH-GGGTTTHHHHHHTCCEEEEEEEEETTEEEEEEEECSTTCHH
T ss_pred HHHHHHHHHhcCCEEEeCCCCCCCCCcccccCChHHHh-hhhhhhhhhHhhCCCeEEEeCCcCCCCCEeEEEEcCCCCHH
Confidence 99999999999999999999999999986432221111 11248999999999999999999999999999999999999
Q ss_pred hHHhHHHHHHhH
Q 007401 454 FLLDTVLDLYDS 465 (605)
Q Consensus 454 ~ll~~a~~l~~~ 465 (605)
.+++++..+++.
T Consensus 464 ~lL~~A~~lE~~ 475 (485)
T 3ip4_A 464 TLYRVAYQYETQ 475 (485)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999999874
No 3
>3h0l_A Glutamyl-tRNA(Gln) amidotransferase subunit A; multi protein complex, ligase, protein biosynthesis; HET: ADP; 2.30A {Aquifex aeolicus} PDB: 3h0m_A 3h0r_A*
Probab=100.00 E-value=1.8e-89 Score=727.51 Aligned_cols=425 Identities=24% Similarity=0.320 Sum_probs=334.5
Q ss_pred HHHHhhhh-----HHHHHHHHHhhcCcccCCCCcCceeeecccCCCCCCCCCCC-CCCCCCceEEEeeccCCCCcccCCC
Q 007401 21 IGVSVVGF-----VVLAETLRRRRNPKLNGRVDFGAFLERFELIPFPQPPPPAA-RQPLAGLKFAIKDVFDVKGYVTGFG 94 (605)
Q Consensus 21 ~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~a~~~a~~~~~-~gpL~Gvp~~vKD~~~~~G~~tt~G 94 (605)
|+++|+++ +|++|+++.+++||++.||.+|||++.++++++++|+.... .||||||||+|||||+++|++||+|
T Consensus 6 sa~~l~~~i~~g~~s~~el~~a~l~ri~~~~~~lna~~~~~~~~Al~~A~~~d~~~gpL~GvPi~vKD~~~~~G~~tt~G 85 (478)
T 3h0l_A 6 SLSELRELLKRGEVSPKEVVESFYDRYNQTEEKVKAYITPLYGKALKQAESLKERELPLFGIPIAVKDNILVEGEKTTCA 85 (478)
T ss_dssp CHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHCCEEEECHHHHHHHHHTCCCTTSTTTTCEEEEETTBCCTTSBCCTT
T ss_pred CHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCcCcEEEEeChHHHHHHHHhhchhcCCcCCceEEEEcCccCCCCCcCCc
Confidence 45556543 99999999999999999999999999988877665543222 7999999999999999999999999
Q ss_pred chhhhhcCCCCCCChHHHHHHHhCCCeEeeecccccccccCCCCCCCCCCCCCCCCCCCCCCCCchHHHHHHHhcCCcee
Q 007401 95 SPDWKRDHHEAERTAVVVTLLLKNGATCIGKTVLDEFAFGITGENKHYGTPVNPQMPSHIPGGSSSGSAVAVAAQLVDFA 174 (605)
Q Consensus 95 s~~~~~~~~~~~~da~~V~rL~~aGai~~GKt~~~e~~~~~~~~n~~~G~~~NP~~~~~~~GGSSgGsaaaVAag~~~~a 174 (605)
|+.+.+ .++.+||++|+||++|||||+||||||||+++.+|+|++||+|+||||++|+|||||||||||||+|++|+|
T Consensus 86 s~~~~~--~~~~~da~~V~rL~~aGaii~GKTn~~E~~~~~~~~n~~~G~t~NP~~~~~~~GGSSgGsaaaVAag~~~~a 163 (478)
T 3h0l_A 86 SKILEN--FVAPYDATVIERLKKAGALIVGKTNLDEFAMGSSTEYSAFFPTKNPWDLERVPGGSSGGSAASVAVLSAPVS 163 (478)
T ss_dssp CGGGTT--CBCSSCCHHHHHHHHTTCEEEEEECCSGGGCCSSSTTCSSCCCCCTTCTTBCCCSSSHHHHHHHHHTSSSCE
T ss_pred CHhhcC--CCCCCCHHHHHHHHHCCCEEEEEeCchhhhcCCCCCCCCCCCcCCCccCCCCCCcchHHHHHHHHCCCCcee
Confidence 999875 678899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccCCCCccchhhhhcccccccCCCCCccCCCCccCCCCCccccccccCHHHHHHHHHHHccCCCCCc------------
Q 007401 175 LGTDTIGCVRVPASFCGILGYRPSHGTVSMIGVLPNSQSLDTVGLLARNASILHRVGHVLLQLNAVEP------------ 242 (605)
Q Consensus 175 ~GtD~gGSiR~PAa~~Gv~GlkPt~G~v~~~G~~p~~~~~d~~G~~ar~~~d~~~v~~~~~~~~~~~~------------ 242 (605)
+|||||||||+||+||||||||||+||||+.|++|+++++|++|||+||++|++.+++++.+.+..++
T Consensus 164 ~GtDtgGSiR~PAa~cGv~GlKPT~G~v~~~g~~~~~~~~d~~Gp~arsv~D~a~~l~vl~g~d~~d~~~~~~p~~~~~~ 243 (478)
T 3h0l_A 164 LGSDTGGSIRQPASFCGVIGIKPTYGRVSRYGLVAFASSLDQIGVFGRRTEDVALVLEVISGWDEKDSTSAKVPVPEWSE 243 (478)
T ss_dssp EEECSSSTTHHHHHHHTCEEEECCTTSBCCTTBCCSCTTTCCEEEEESSHHHHHHHHHHHBSCCTTCTTSCCCCCCCHHH
T ss_pred eecCCCCcchhhhHHhCCeeEeCCCCcccCCCCCCCccCCCeecceeCCHHHHHHHHHHhcCCCcccccccccCccchhh
Confidence 99999999999999999999999999999999999999999999999999999999999987543221
Q ss_pred -----ccCceeeeccchhhhcCCchhhHHHHHHHHHHHHhCCCCCcccccccccc-ccCcchhhhhhcCCCCCCchhHHH
Q 007401 243 -----RRARRLIFADDIFQLSKVPKLKTIHVISKAIESLSGYQNPEHMNVGQYIA-SNVPSLKGLRAQSTSPENGTATLK 316 (605)
Q Consensus 243 -----~~~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~~l~g~~~~~~~~l~~~v~-~~~p~~~~~~~~~~~~~~~~~~~~ 316 (605)
..+.||.+..+.+. ...++++.++++++++.|+..+ +.|+ ..+|.+.+....+ ...
T Consensus 244 ~~~~~~~~lrIgv~~~~~~--~~~~p~v~~a~~~a~~~L~~~G--------~~v~~v~~p~~~~~~~~~--------~~~ 305 (478)
T 3h0l_A 244 EVKKEVKGLKIGLPKEFFE--YELQPQVKEAFENFIKELEKEG--------FEIKEVSLPHVKYSIPTY--------YII 305 (478)
T ss_dssp HTTCCCTTCEEEEEGGGGG--SCCCHHHHHHHHHHHHHHHHTT--------CEEEEECCTTGGGHHHHH--------HHH
T ss_pred hhccCCCCCEEEEECCccc--CCCCHHHHHHHHHHHHHHHHCC--------CEEEEeCCCcHHHHHHHH--------HHH
Confidence 12345666655432 2346789999999999986332 2222 2333332111100 000
Q ss_pred HHHHHHHHhhhhh----------hHhhHHHHHHhcCCCCChhHHHHHHHHhc-----CCHHHHHHHHHHHHHHHHHHHHH
Q 007401 317 ALSSVMLSLQRYE----------FKTIYEEWVKSAKPRLGYNVFERVLEAIN-----TTQDNIKILYKVRNEMRAALQRL 381 (605)
Q Consensus 317 ~~~~~~~~l~~~e----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~s~~~~~~a~~~r~~~~~~~~~~ 381 (605)
...+....+..+. ....++.+.......+++.++.++..+.. ....+|.++++.|..+++.+.++
T Consensus 306 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~a~~~r~~~~~~~~~~ 385 (478)
T 3h0l_A 306 APSEASSNLARYDGVRYGYRAKEYKDIFEMYARTRDEGFGPEVKRRIMLGTFALSAGYYDAYYLKAQKVRRLITNDFLKA 385 (478)
T ss_dssp HHHHHHHHTTTCSSSSSSCCCSCCSSHHHHHHHHHHHHSCHHHHHHHHHHHHHTSTTTTTTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhhhcccccccccHHHHHHHhhhhhcCHHHHHHHHhhchhccchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 0011111111110 00011222222234578888888876642 22346889999999999999999
Q ss_pred hCCCcEEEEeCCCCCCccCCcccccchhhhhchhhhcccccccCCceeeeecccCCCCCceeEEeeccCCchhHHhHHHH
Q 007401 382 LKDDKILVIPTVSDPPLKLNTKKTYSAEFHDRTLVLSSIGSMSGCCQVAIPIGKYNEHPISISFITYHGGDKFLLDTVLD 461 (605)
Q Consensus 382 ~~~~Dvll~Pt~~~~ap~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~G~~~glp~g~~~~~~~~~d~~ll~~a~~ 461 (605)
|+++|+||+||+|.+||++++......... ....||.++|++|+|++|||+|+.+|+|+|+|+++++++|..+++++..
T Consensus 386 ~~~~D~ll~Pt~~~~a~~~~~~~~~~~~~~-~~~~~t~~~nl~G~PaisvP~g~~~GlPvGlQlvg~~~~D~~LL~~A~~ 464 (478)
T 3h0l_A 386 FEEVDVIASPTTPTLPFKFGERLENPIEMY-LSDILTVPANLAGLPAISIPIAWKDGLPVGGQLIGKHWDETTLLQISYL 464 (478)
T ss_dssp TTTCSEEEEESCSSSCCBTTTTSSSHHHHH-GGGTTTHHHHHHTCCEEEEEEEEETTEEEEEEEEECTTCHHHHHHHHHH
T ss_pred HhcCCEEEcCCCCCCCCCcccccCChHhhh-hhhhhhhhhHhhCCCeEEEeCCCCCCCCeEEEEECCCCCHHHHHHHHHH
Confidence 999999999999999999986432221111 1224899999999999999999999999999999999999999999999
Q ss_pred HHhHH
Q 007401 462 LYDSL 466 (605)
Q Consensus 462 l~~~~ 466 (605)
+++..
T Consensus 465 lE~~~ 469 (478)
T 3h0l_A 465 WEQKF 469 (478)
T ss_dssp HHHHS
T ss_pred HHHhc
Confidence 98753
No 4
>3kfu_E Glutamyl-tRNA(Gln) amidotransferase subunit A; ASPRS, gatcab, ATP-binding, aminoacyl-tRNA synthetase, ligas nucleotide-binding, protein biosynthesis, ligase-RNA comple; HET: H2U 5MU PSU; 3.00A {Thermus thermophilus}
Probab=100.00 E-value=3.2e-89 Score=723.25 Aligned_cols=416 Identities=26% Similarity=0.355 Sum_probs=332.2
Q ss_pred hhHHHHHHHHHhhcCcccCCCCcCceeeecccCCCCCCCCCCCCCCCCCceEEEeeccCCCCcccCCCchhhhhcCCCCC
Q 007401 27 GFVVLAETLRRRRNPKLNGRVDFGAFLERFELIPFPQPPPPAARQPLAGLKFAIKDVFDVKGYVTGFGSPDWKRDHHEAE 106 (605)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~a~~~a~~~~~~gpL~Gvp~~vKD~~~~~G~~tt~Gs~~~~~~~~~~~ 106 (605)
+.+|++|+++.+++||++.||.+|||++.+ ++++++|+......|||||||+|||||+++|++||+||+.|.+ .++.
T Consensus 13 g~~s~~el~~a~l~ri~~~~~~lna~~~~~-~~al~~A~~~d~~~pL~GvPi~vKD~~~~~G~~tt~Gs~~~~~--~~~~ 89 (471)
T 3kfu_E 13 GEVSPLEVAQAYLKRVQELDPGLGAFLSLN-ERLLEEAEAVDPGLPLAGLVVAVKDNIATRGLRTTAGSRLLEN--FVPP 89 (471)
T ss_dssp TSSCHHHHHHHHHHHHHHHHHHHCCEEEEC-CTTTHHHHTSCCSCTTTTCEEEEETTBCCTTSCCCTTCSTTTT--CCCS
T ss_pred CCCCHHHHHHHHHHHHHHhCCCccEEEEeC-HHHHHHHHhcCccCCcCCCeEEEECCcccCCccccccCHhHcC--CCCC
Confidence 449999999999999999999999999999 8888776654444599999999999999999999999999875 5788
Q ss_pred CChHHHHHHHhCCCeEeeecccccccccCCCCCCCCCCCCCCCCCCCCCCCCchHHHHHHHhcCCceeeccCCCCccchh
Q 007401 107 RTAVVVTLLLKNGATCIGKTVLDEFAFGITGENKHYGTPVNPQMPSHIPGGSSSGSAVAVAAQLVDFALGTDTIGCVRVP 186 (605)
Q Consensus 107 ~da~~V~rL~~aGai~~GKt~~~e~~~~~~~~n~~~G~~~NP~~~~~~~GGSSgGsaaaVAag~~~~a~GtD~gGSiR~P 186 (605)
+||++|+||++|||||+||||||||+++.+|+|++||+|+||||++|+|||||||||||||+|++|+|+|||||||||+|
T Consensus 90 ~da~~V~rL~~aGaii~GKTn~~E~~~~~~~~n~~~G~t~NP~~~~~~~GGSSgGsaaaVAag~~~~a~GtDtgGSiR~P 169 (471)
T 3kfu_E 90 YEATAVARLKALGALVLGKTNLDEFGMGSSTEHSAFFPTKNPFDPDRVPGGSSGGSAAALAADLAPLALGSDTGGSVRQP 169 (471)
T ss_dssp SCCHHHHHHHTTTCEEEEEECCSGGGCCSSSTTCSSCCCCBTTBTTBCCCSSSHHHHHHHHTTSCSEEEEEESSSTTHHH
T ss_pred CChHHHHHHHHCCCEEEeecCcCchhcCCCCCCCCCCCcCCCCccCcCCCCCcHHHHHHHHCCCCccccccCCCCccccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcccccccCCCCCccCCCCccCCCCCccccccccCHHHHHHHHHHHccCCCCCc----------------ccCceeee
Q 007401 187 ASFCGILGYRPSHGTVSMIGVLPNSQSLDTVGLLARNASILHRVGHVLLQLNAVEP----------------RRARRLIF 250 (605)
Q Consensus 187 Aa~~Gv~GlkPt~G~v~~~G~~p~~~~~d~~G~~ar~~~d~~~v~~~~~~~~~~~~----------------~~~~~l~~ 250 (605)
|+||||||||||+||||+.|++|+++++|++|||+||++|++.+++++.+.+..++ ..+.|+.+
T Consensus 170 Aa~cGv~GlKPT~G~v~~~g~~~~~~~~d~~Gp~arsv~D~a~~~~~l~g~d~~d~~~~~~~~~~~~~~~~~~~~lrIgv 249 (471)
T 3kfu_E 170 AAFCGVYGLKPTYGRVSRFGLIAYASSLDQIGPMARSVRDLALLMDAAAGPDPLDATSLDLPPRFQEALEGPLPPLRLGV 249 (471)
T ss_dssp HHHTTCEEEECCTTSSCCTTBCCSCTTTCEEEEEESSHHHHHHHHHHHCSCCTTCTTCCCCCCCTTCCSCCCCSSCEEEE
T ss_pred hhhcCceeeeCCCCCccCCCCCCcccccCeecceeCCHHHHHHHHHHhcCCCcccccccCCCcchhhhhccCCCCCEEEE
Confidence 99999999999999999999999999999999999999999999999987543221 12345566
Q ss_pred ccchhhhcCCchhhHHHHHHHHHHHHhCCCCCccccccccccccCcchhhhhhcCCCCCCchhHHHHHHHHHHHhhhhhh
Q 007401 251 ADDIFQLSKVPKLKTIHVISKAIESLSGYQNPEHMNVGQYIASNVPSLKGLRAQSTSPENGTATLKALSSVMLSLQRYEF 330 (605)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~a~~~l~g~~~~~~~~l~~~v~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~e~ 330 (605)
..+.+ ...++++.++++++++.|+..+. +.++...|.+.+....+ ......+....+..+..
T Consensus 250 ~~~~~---~~~~p~v~~a~~~a~~~L~~~G~-------~v~~v~~p~~~~~~~~~--------~~~~~~e~~~~~~~~~~ 311 (471)
T 3kfu_E 250 VREAL---AGNSPGVERALEEALKVFRELGL-------SVREVSWPSLPQALAAY--------YILAPAEASSNLARYDG 311 (471)
T ss_dssp EGGGT---TTCCHHHHHHHHHHHHHHHTTTC-------EEEEECCTTGGGHHHHH--------HHHHHHHHHHHGGGCST
T ss_pred ECCcc---CCCCHHHHHHHHHHHHHHHHcCC-------eeeeecCccHHHHHHHH--------HHHHHHHHHHHHHHhhh
Confidence 55543 23467899999999999964332 11222334332211100 00001111111111100
Q ss_pred --------HhhHHHHHHhcCCCCChhHHHHHHHHhcC-----CHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEeCCCCCC
Q 007401 331 --------KTIYEEWVKSAKPRLGYNVFERVLEAINT-----TQDNIKILYKVRNEMRAALQRLLKDDKILVIPTVSDPP 397 (605)
Q Consensus 331 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----s~~~~~~a~~~r~~~~~~~~~~~~~~Dvll~Pt~~~~a 397 (605)
...+.+++...+..+++.++.++..+... +..+|.++++.|..+++.+.++|+++|+||+||+|.+|
T Consensus 312 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~a~~~r~~~~~~~~~~~~~~Dvll~Pt~~~~a 391 (471)
T 3kfu_E 312 TLYGRRAAGEEVEGMMEATRALFGLEVKRRVLVGTFVLSSGYYEAYYGRAQAFRRRLKAEAQALFREVDLLLLPTTPHPA 391 (471)
T ss_dssp TTTSCCCCCSSSHHHHHHHHTTSCHHHHHHHHHHHHHHSTTTTTTTHHHHHHHHHHHHHHHHHHTTTCSEEEEESCSSSC
T ss_pred hccccccchhhHHHHHHhhhhhcCHHHHHHHHhcccccccccCHHHHHHHHHHHHHHHHHHHHHHhcCCEEEeCCcCCCC
Confidence 01122222222233899998888776433 33589999999999999999999999999999999999
Q ss_pred ccCCcccccchhhhhchhhhcccccccCCceeeeecccCCCCCceeEEeeccCCchhHHhHHHHHHhH
Q 007401 398 LKLNTKKTYSAEFHDRTLVLSSIGSMSGCCQVAIPIGKYNEHPISISFITYHGGDKFLLDTVLDLYDS 465 (605)
Q Consensus 398 p~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~G~~~glp~g~~~~~~~~~d~~ll~~a~~l~~~ 465 (605)
|++++.......+.. ..||.++|++|+|++|||+|+.+|+|+|+|+++++++|..+++++..+++.
T Consensus 392 ~~~~~~~~~~~~~~~--~~~t~~~nl~G~PaisvP~g~~~GlPvGlQlvg~~~~D~~LL~~A~~lE~~ 457 (471)
T 3kfu_E 392 FPFGARRDPLAMYRE--DLYTVGANLTGLPALSFPAGFEGHLPVGLQLLAPWGEDERLLRAALAFEEA 457 (471)
T ss_dssp CBTTTTCSHHHHHGG--GTTTHHHHHHCCCEEEEEEEEETTEEEEEEEECSTTCHHHHHHHHHHHHHH
T ss_pred CccccccchHHHHHH--hhhhhcchhhCCCeEEEeCCCCCCCCeEEEEECCCCCHHHHHHHHHHHHHH
Confidence 999864321111221 238999999999999999999889999999999999999999999999864
No 5
>1o9p_A Malonamidase E2; malonate; 1.8A {Bradyrhizobium japonicum} SCOP: c.117.1.1 PDB: 1o9o_A 1obl_A 1och_A 1obk_A 1obi_A 1o9q_A* 1obj_A 1o9n_A 1ock_A 1ocl_A 1ocm_A
Probab=100.00 E-value=2e-88 Score=707.53 Aligned_cols=394 Identities=24% Similarity=0.305 Sum_probs=334.0
Q ss_pred hhHHHHHHHHHhhcCcccCCCCcCceeeecccCCCCCCCCCCCCCCCCCceEEEeeccCCCCcccCCCchhhhhcCCCCC
Q 007401 27 GFVVLAETLRRRRNPKLNGRVDFGAFLERFELIPFPQPPPPAARQPLAGLKFAIKDVFDVKGYVTGFGSPDWKRDHHEAE 106 (605)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~a~~~a~~~~~~gpL~Gvp~~vKD~~~~~G~~tt~Gs~~~~~~~~~~~ 106 (605)
+.+|++|+++.+++||++.||.+|||++..++++ + ...||||||||+|||||+++|++||+||+.|.+ .++.
T Consensus 14 g~~s~~el~~a~l~ri~~~~~~lna~~~~~~~~a-~-----~~~gpL~GvPi~vKD~~~v~G~~tt~Gs~~~~~--~~~~ 85 (414)
T 1o9p_A 14 GELSPNAAIAQSHAAIEAREKEVHAFVRHDKSAR-A-----QASGPLRGIAVGIKDIIDTANMPTEMGSEIYRG--WQPR 85 (414)
T ss_dssp TSSCHHHHHHHHHHHHHHHHHHHCCEEEECTTCC-C-----CSSSTTTTCEEEEETTBCCSSSCCCTTSGGGTT--CCCS
T ss_pred CCCCHHHHHHHHHHHHHHhCccccEEEEeCHHHh-c-----ccCCCcCCCEEEEEcccccCCcccCcCCHhhcc--CCCC
Confidence 4499999999999999999999999999988876 2 457999999999999999999999999999975 5778
Q ss_pred CChHHHHHHHhCCCeEeeecccccccccCCCCCCCCCCCCCCCCCCCCCCCCchHHHHHHHhcCCceeeccCCCCccchh
Q 007401 107 RTAVVVTLLLKNGATCIGKTVLDEFAFGITGENKHYGTPVNPQMPSHIPGGSSSGSAVAVAAQLVDFALGTDTIGCVRVP 186 (605)
Q Consensus 107 ~da~~V~rL~~aGai~~GKt~~~e~~~~~~~~n~~~G~~~NP~~~~~~~GGSSgGsaaaVAag~~~~a~GtD~gGSiR~P 186 (605)
+||++|+|||+|||||+||||||||++ .|+ |+|+||||++|+|||||||||||||+|++|+|+|||||||||+|
T Consensus 86 ~dA~~V~rL~~aGAii~GKTn~~Efa~----~n~--G~t~NP~~~~~~pGGSSgGsAaaVAag~~~~alGtDtgGSIRiP 159 (414)
T 1o9p_A 86 SDAPVVMMLKRAGATIIGKTTTTAFAS----RDP--TATLNPHNTGHSPGGASSGSAAAVGAGMIPLALGTQTGGSVIRP 159 (414)
T ss_dssp SCCHHHHHHHHTTCEEEEEECCCGGGS----SCC--CSCCBTTBTTBCCCSSSHHHHHHHHTTSCSEEEEEESSSTTHHH
T ss_pred CCHHHHHHHHHCCCEEEEecCCchhhc----CCC--CCCCCCCCCCCCCCcchHHHHHHHHcCCCceEEeeCCchhhhHh
Confidence 999999999999999999999999998 455 99999999999999999999999999999999999999999999
Q ss_pred hhhcccccccCCCCCccCCCCccCCCCCccccccccCHHHHHHHHHHHccCCCC---CcccCceeeeccchhhhcCCchh
Q 007401 187 ASFCGILGYRPSHGTVSMIGVLPNSQSLDTVGLLARNASILHRVGHVLLQLNAV---EPRRARRLIFADDIFQLSKVPKL 263 (605)
Q Consensus 187 Aa~~Gv~GlkPt~G~v~~~G~~p~~~~~d~~G~~ar~~~d~~~v~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~~~~ 263 (605)
|+||||||||||+||||+.|++|+++++|++|||+||++|++.+++++.+.+.. ....+.++.+..+.+. ...++
T Consensus 160 Aa~cGv~GlKPT~G~vs~~G~~~~~~s~d~~Gp~arsv~D~a~~~~~l~g~~~~~~~~~~~~lrig~~~~~~~--~~~~~ 237 (414)
T 1o9p_A 160 AAYCGTAAIKPSFRMLPTVGVKCYSWALDTVGLFGARAEDLARGLLAMTGRSEFSGIVPAKAPRIGVVRQEFA--GAVEP 237 (414)
T ss_dssp HHHHTCEEEECSTTSSCCTTBCCSCTTTCEEEEEESSHHHHHHHHHHHHCCGGGSSCCCCSSCEEEECCCGGG--CCCCH
T ss_pred HHHhCCeeEECCCCCCCCCCCCCCCCccCeeccccCCHHHHHHHHHHhcCCCccccccCCCCCEEEEECcccc--CCCCH
Confidence 999999999999999999999999999999999999999999999999875411 1123446666554431 23467
Q ss_pred hHHHHHHHHHHHHhCCCCCccccccccccc-cCcchhhhhhcCCCCCCchhHHHHHHHHHHHhhhhhhHhhHHHHHHhcC
Q 007401 264 KTIHVISKAIESLSGYQNPEHMNVGQYIAS-NVPSLKGLRAQSTSPENGTATLKALSSVMLSLQRYEFKTIYEEWVKSAK 342 (605)
Q Consensus 264 ~~~~~~~~a~~~l~g~~~~~~~~l~~~v~~-~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~ 342 (605)
++.++++++++.|+.. |+.|++ ..|... ..+...+..+..+|....+..++....
T Consensus 238 ~v~~a~~~a~~~L~~~--------G~~v~~~~~~~~~----------------~~~~~~~~~~~~~e~~~~~~~~~~~~~ 293 (414)
T 1o9p_A 238 AAEQGLQAAIKAAERA--------GASVQAIDLPEAV----------------HEAWRIHPIIQDFEAHRALAWEFSEHH 293 (414)
T ss_dssp HHHHHHHHHHHHHHHT--------TCEEEECCCCHHH----------------HHHHHHHHHHHHHHHHHHTHHHHHHSG
T ss_pred HHHHHHHHHHHHHHHC--------CCEEEEecCcchH----------------HHHHHHHHHHHHHHHHHHHHHHHHhCh
Confidence 8999999999988632 233322 222211 111222233445566666777777777
Q ss_pred CCCChhHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEeCCCCCCccCCcccccchhhhhchhhhccccc
Q 007401 343 PRLGYNVFERVLEAINTTQDNIKILYKVRNEMRAALQRLLKDDKILVIPTVSDPPLKLNTKKTYSAEFHDRTLVLSSIGS 422 (605)
Q Consensus 343 ~~~~~~~~~~~~~~~~~s~~~~~~a~~~r~~~~~~~~~~~~~~Dvll~Pt~~~~ap~~~~~~~~~~~~~~~~~~~t~~~n 422 (605)
..++|.++.+++.+..++..+|.++++.|..+++.+.++|+++|+||+||+|.+||+++..... ...||.++|
T Consensus 294 ~~~~~~~~~~~~~g~~~~~~~~~~a~~~r~~~~~~~~~~~~~~D~ll~Pt~~~~a~~~~~~~~~-------~~~~t~~~n 366 (414)
T 1o9p_A 294 DEIAPMLRASLDATVGLTPKEYDEARRIGRRGRRELGEVFEGVDVLLTYSAPGTAPAKALASTG-------DPRYNRLWT 366 (414)
T ss_dssp GGSCHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHTTTCSEEEEESSSSSCCBGGGCCCC-------CGGGTHHHH
T ss_pred hhcCHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHcCCCEEEeCCCCCCCCcccccCCc-------ccchhhhhH
Confidence 7899999999999999999999999999999999999999999999999999999998653211 125799999
Q ss_pred ccCCceeeeecccCCCCCceeEEeeccCCchhHHhHHHHHHhHHH
Q 007401 423 MSGCCQVAIPIGKYNEHPISISFITYHGGDKFLLDTVLDLYDSLQ 467 (605)
Q Consensus 423 l~G~PaisvP~G~~~glp~g~~~~~~~~~d~~ll~~a~~l~~~~~ 467 (605)
++|+|++|||+|+..|+|+|+|+++++++|..+++++..++..+.
T Consensus 367 l~G~PaisvP~g~~~GlPvGvqlvg~~~~d~~lL~~a~~le~~~~ 411 (414)
T 1o9p_A 367 LMGNPCVNVPVLKVGGLPIGVQVIARFGNDAHALATAWFLEDALA 411 (414)
T ss_dssp HHCCCEEEEEEEEETTEEEEEEEEESTTCHHHHHHHHHHHHHHHH
T ss_pred hcCCCeEEeeCCCCCCCCeEEEEECCCCChHHHHHHHHHHHHHhc
Confidence 999999999999877999999999999999999999999987543
No 6
>3a2q_A 6-aminohexanoate-cyclic-dimer hydrolase; alpha/beta fold, nylon degradation; 1.80A {Arthrobacter SP} PDB: 3a2p_A
Probab=100.00 E-value=3.5e-89 Score=731.40 Aligned_cols=420 Identities=20% Similarity=0.225 Sum_probs=340.7
Q ss_pred HHHHhhhh-----HHHHHHHHHhhcCcccCCCCcCceeeecccCCCCCCCCCCCCCCCCCceEEEeecc-CCCCcccCCC
Q 007401 21 IGVSVVGF-----VVLAETLRRRRNPKLNGRVDFGAFLERFELIPFPQPPPPAARQPLAGLKFAIKDVF-DVKGYVTGFG 94 (605)
Q Consensus 21 ~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~a~~~a~~~~~~gpL~Gvp~~vKD~~-~~~G~~tt~G 94 (605)
|+.+|+++ +|++|+++.+++||++.||.+|||++..+++++++|+. . .||||||||+||||| +++|++||+|
T Consensus 9 ~~~~l~~~i~~g~~s~~el~~a~l~ri~~~~~~lna~~~~~~~~Al~~A~~-d-~gpL~GvPi~vKD~~~~v~G~~Tt~G 86 (493)
T 3a2q_A 9 DATAQAELVRSGEISRTELLEATIAHVQAVNPEINAVIIPLFEKARRESEL-A-SGPFAGVPYLLKDLTVVSQGDINTSS 86 (493)
T ss_dssp CHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHCCEEEECHHHHHHHHHH-C-CSTTTTCEEEEESSSSCCTTSBCCTT
T ss_pred hHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCccCeEEecCHHHHHHHhhh-c-CCCcCCcEEEEecCCcCcCCCccccc
Confidence 55566543 99999999999999999999999999988877766654 3 699999999999999 9999999999
Q ss_pred chhhhhcCCCCCCChHHHHHHHhCCCeEeeecccccccccCCCCCCCCCCCCCCCCCCCCCCCCchHHHHHHHhcCCcee
Q 007401 95 SPDWKRDHHEAERTAVVVTLLLKNGATCIGKTVLDEFAFGITGENKHYGTPVNPQMPSHIPGGSSSGSAVAVAAQLVDFA 174 (605)
Q Consensus 95 s~~~~~~~~~~~~da~~V~rL~~aGai~~GKt~~~e~~~~~~~~n~~~G~~~NP~~~~~~~GGSSgGsaaaVAag~~~~a 174 (605)
|+.|...+.++.+||++|+||++|||||+||||||||+++.+|+|++||+|+||||++|+|||||||||||||+|++|+|
T Consensus 87 s~~~~~~~~~~~~dA~vV~rLr~AGAii~GKTn~~Efa~~~~~~n~~~G~t~NP~~~~~~pGGSSgGsAAAVAaG~~~~a 166 (493)
T 3a2q_A 87 IKGMKESGYRADHDAYFVQRMRAAGFVLLGKTNTPEMGNQVTTEPEAWGATRNPWNLGRSVGGSSGGSGAAVAAALSPVA 166 (493)
T ss_dssp CHHHHHHTCBCSSCCHHHHHHHHHTCEEEEEECCSGGGCSSSCCCTTTCCCCBTTBTTBCCCSSSHHHHHHHHTTSCSEE
T ss_pred ChhhhhcCCCCCCCHHHHHHHHHCCCceEEEcChhhhhcCCCCCCCCCCCCCCCCCCCCCCCcCcHHHHHHHHcCCCcee
Confidence 99997212678899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccCCCCccchhhhhcccccccCCCCCccCCCC--c-cCCCCCccccccccCHHHHHHHHHHHccCCCCCc---------
Q 007401 175 LGTDTIGCVRVPASFCGILGYRPSHGTVSMIGV--L-PNSQSLDTVGLLARNASILHRVGHVLLQLNAVEP--------- 242 (605)
Q Consensus 175 ~GtD~gGSiR~PAa~~Gv~GlkPt~G~v~~~G~--~-p~~~~~d~~G~~ar~~~d~~~v~~~~~~~~~~~~--------- 242 (605)
+|||||||||+||+||||||||||+||||+.|+ + |.++++|++|||+||++|++.+++++.+.+..++
T Consensus 167 lGtDtgGSIRiPAa~cGv~GlKPT~Grvs~~g~~~~~~~~~sld~~Gp~arsv~D~a~~l~~l~g~d~~d~~~~~~p~~~ 246 (493)
T 3a2q_A 167 HGNDAAGAVRIPASVCGVVGLKPTRGRISPGPLVTDSDNVAGAAHEGLFARSVRDIAALLDVVSGHRPGDTFCAPTASRP 246 (493)
T ss_dssp EEEESSSTTHHHHHHHTSEEEECSTTSBCCCSSCCHHHHHHTTCEEEEEESSHHHHHHHHHHHBSCCTTCSCCCCCCSSC
T ss_pred eecCCCcccccchhhcCcceEEcCCCccCCCCCcccccccccCceecCccCCHHHHHHHHHHHcCCCCCCcccccCCCcc
Confidence 999999999999999999999999999999998 5 7788999999999999999999999987542211
Q ss_pred --------ccCceeeeccchhhhcCCchhhHHHHHHHHHHHHhCCCCCccccccccccc-cCcchhhhhhcCCCCCCchh
Q 007401 243 --------RRARRLIFADDIFQLSKVPKLKTIHVISKAIESLSGYQNPEHMNVGQYIAS-NVPSLKGLRAQSTSPENGTA 313 (605)
Q Consensus 243 --------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~~l~g~~~~~~~~l~~~v~~-~~p~~~~~~~~~~~~~~~~~ 313 (605)
..+.++.+..+.+......++++.++++++++.|+.. |+.|++ ..|.+.. .
T Consensus 247 ~~~~~~~~~~~lrIgv~~~~~~~~~~~~~~v~~a~~~a~~~L~~~--------G~~v~~~~~~~~~~--~---------- 306 (493)
T 3a2q_A 247 YAQGISENPGSLRVGVLTHNPVGDFALDPECAAAARGAAAALAAL--------GHDVNDAYPEALGD--R---------- 306 (493)
T ss_dssp HHHHTTSCCCSCEEEECCSCTTCSSCCCHHHHHHHHHHHHHHHHT--------TCEEEECCCGGGGC--C----------
T ss_pred hhhhcccCCCCCEEEEECCccccCCCCCHHHHHHHHHHHHHHHHC--------CCEEEEeCCCccCH--H----------
Confidence 1223555555432101124678999999999998632 222222 2221210 0
Q ss_pred HHHHHHHHHHHhhhhhhHh---hHHHHHH--hcCCCCChhHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHh-CCCcE
Q 007401 314 TLKALSSVMLSLQRYEFKT---IYEEWVK--SAKPRLGYNVFERVLEAINTTQDNIKILYKVRNEMRAALQRLL-KDDKI 387 (605)
Q Consensus 314 ~~~~~~~~~~~l~~~e~~~---~~~~~~~--~~~~~~~~~~~~~~~~~~~~s~~~~~~a~~~r~~~~~~~~~~~-~~~Dv 387 (605)
.+...+..+...|+.. .+..++. .....+++.++.+++.+..++..+|.++++.|..+++.+.++| +++|+
T Consensus 307 ---~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~r~~~~~~~~~~~~~~~D~ 383 (493)
T 3a2q_A 307 ---SFLKDYSTICDVAIAREIERNGELIGRPLTEDDVEWTSWEMVKRADQVTGRAFAACVDELRYYAGKVERWWEAGWDL 383 (493)
T ss_dssp ---THHHHHHHHHHHHHHHHHHHHHHHHTSCCCTTTSCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHTTCCE
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHhcCccChhhcCHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHhcCCCE
Confidence 0011112223334433 2333331 2345688999999999999999999999999999999999999 99999
Q ss_pred EEEeCCCCCCccCCccccc-c-------hh-h--hhchhhhcccccccCCceeeeecccC-CCCCceeEEeeccCCchhH
Q 007401 388 LVIPTVSDPPLKLNTKKTY-S-------AE-F--HDRTLVLSSIGSMSGCCQVAIPIGKY-NEHPISISFITYHGGDKFL 455 (605)
Q Consensus 388 ll~Pt~~~~ap~~~~~~~~-~-------~~-~--~~~~~~~t~~~nl~G~PaisvP~G~~-~glp~g~~~~~~~~~d~~l 455 (605)
||+||+|.+||++++.... . .. + ...+..||.++|++|+|++|||+|++ +|+|+|+|+++++++|..+
T Consensus 384 ll~Pt~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~~~~GlPvGvQlvg~~~~d~~l 463 (493)
T 3a2q_A 384 LILPTVTRQTPEIGELMLAKGTDLEGRQSAFISGSLQMLAFTVPFNVSGQPAISLPIGMSSDGMPIGVQIVAAYGREDLL 463 (493)
T ss_dssp EEEESCSSCCCBTTTTCCCTTCCCCSSCGGGSHHHHHHHTTTTHHHHHCCCEEEEEEEECTTSCEEEEEEEESTTCHHHH
T ss_pred EEcCCCCCCCCCCcccccccccccccccchhhhhhhhhhcccccccccCCCceeccCCcCCCCCCeEEEEecCCCChHHH
Confidence 9999999999999864321 0 01 1 12345689999999999999999986 9999999999999999999
Q ss_pred HhHHHHHHhH
Q 007401 456 LDTVLDLYDS 465 (605)
Q Consensus 456 l~~a~~l~~~ 465 (605)
++++..+++.
T Consensus 464 L~~A~~lE~~ 473 (493)
T 3a2q_A 464 LQVAAQLEGA 473 (493)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999998874
No 7
>2gi3_A Glutamyl-tRNA(Gln) amidotransferase subunit A; TM1272, structural genomics, joint center for structura genomics, JCSG; HET: MSE MPD; 1.80A {Thermotoga maritima} SCOP: c.117.1.1 PDB: 3al0_A*
Probab=100.00 E-value=3.4e-88 Score=720.72 Aligned_cols=402 Identities=23% Similarity=0.290 Sum_probs=325.6
Q ss_pred hhHHHHHHHHHhhcCcccCCCCcCceeeecccCCCCCCCCCCCCCCCCCceEEEeeccCCCCcccCCCchhhhhcCCCCC
Q 007401 27 GFVVLAETLRRRRNPKLNGRVDFGAFLERFELIPFPQPPPPAARQPLAGLKFAIKDVFDVKGYVTGFGSPDWKRDHHEAE 106 (605)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~a~~~a~~~~~~gpL~Gvp~~vKD~~~~~G~~tt~Gs~~~~~~~~~~~ 106 (605)
+.+|++|+++.+++||++.||.+|||++..+++++.+ . ||||||||+|||||+++|++||+||+.|.+ .++.
T Consensus 19 g~~s~~el~~a~l~ri~~~~~~lna~~~~~~~~ald~-----~-gpL~GvPi~vKD~~~v~G~~Tt~Gs~~~~~--~~~~ 90 (476)
T 2gi3_A 19 SEEEREKLPQLSLETIKRLDPHVKAFISVRENVSVEK-----K-GKFWGIPVAIKDNILTLGMRTTCASRILEN--YESV 90 (476)
T ss_dssp CHHHHTTHHHHHHHHHHHHHHHHCCEEEECCCCCCCC-----C-STTTTCEEEEETTBCCSSSCCCTTCGGGTT--CCCC
T ss_pred CCCCHHHHHHHHHHHHHHhCCceeEEEecChhhhhhc-----c-CCcCCceEEEEcCccCCCCccCccChhhcC--CCCC
Confidence 4599999999999999999999999999998887732 2 999999999999999999999999999975 6788
Q ss_pred CChHHHHHHHhCCCeEeeecccccccccCCCCCCCCCCCCCCCCCCCCCCCCchHHHHHHHhcCCceeeccCCCCccchh
Q 007401 107 RTAVVVTLLLKNGATCIGKTVLDEFAFGITGENKHYGTPVNPQMPSHIPGGSSSGSAVAVAAQLVDFALGTDTIGCVRVP 186 (605)
Q Consensus 107 ~da~~V~rL~~aGai~~GKt~~~e~~~~~~~~n~~~G~~~NP~~~~~~~GGSSgGsaaaVAag~~~~a~GtD~gGSiR~P 186 (605)
+||++|+|||+|||||+||||||||+++.+|+|++||+|+||||++|+|||||||||||||+|++|+|+|||||||||+|
T Consensus 91 ~dA~vV~rLr~AGAii~GKTn~~Efa~~~~~~n~~~G~t~NP~~~~~~pGGSSgGsAaAVAag~~~~alGtDtgGSIRiP 170 (476)
T 2gi3_A 91 FDATVVKKMKEAGFVVVGKANLDEFAMGSSTERSAFFPTRNPWDLERVPGGSSGGSAAAVSAGMVVAALGSDTGGSVRQP 170 (476)
T ss_dssp SCCHHHHHHHHHTCEEEEEECCSGGGCCSSSTTCSSCCCCBTTBTTBCCCSSSHHHHHHHHTTSSSEEEEEESSSTTHHH
T ss_pred CChHHHHHHHHCCCEEEEecCchhhhcCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHcCCCceEeecCCCchhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcccccccCCCCCccCCCCccCCCCCccccccccCHHHHHHHHHHHccCCCCCc----------------ccCceeee
Q 007401 187 ASFCGILGYRPSHGTVSMIGVLPNSQSLDTVGLLARNASILHRVGHVLLQLNAVEP----------------RRARRLIF 250 (605)
Q Consensus 187 Aa~~Gv~GlkPt~G~v~~~G~~p~~~~~d~~G~~ar~~~d~~~v~~~~~~~~~~~~----------------~~~~~l~~ 250 (605)
|+||||||||||+||||+.|++|+++++|++|||+||++|++.+++++.+.+..++ ..+.|+.+
T Consensus 171 Aa~cGv~GlKPT~G~vs~~G~~p~~~sld~~Gp~arsv~D~a~~l~~l~g~d~~d~~~~~~p~~~~~~~~~~~~~lrig~ 250 (476)
T 2gi3_A 171 ASLCGVVGYKPTYGLVSRYGLVAFASSLDQIGPITKTVRDAAILMEIISGRDENDATTVNRKVDFLSEIEEGVSGMKFAV 250 (476)
T ss_dssp HHHHTSEEEECCTTSBCCTTBCCSCTTTCEEEEEESSHHHHHHHHHHHBSCBTTBTTCCSCCCCSSTTTTSCCTTCEEEE
T ss_pred HHHcCCeEEeCCCCcCCCCCCCCcccCCCeeeeeeCCHHHHHHHHHHhhCCCCCCccccCCCcchhhhhhcCCCCCEEEE
Confidence 99999999999999999999999999999999999999999999999986532211 12345666
Q ss_pred ccchhhhcCCchhhHHHHHHHHHHHHhCCCCCcccccccccc-ccCcchhhhhhcCCCCCCchhHHHHHHHHHHHhhhhh
Q 007401 251 ADDIFQLSKVPKLKTIHVISKAIESLSGYQNPEHMNVGQYIA-SNVPSLKGLRAQSTSPENGTATLKALSSVMLSLQRYE 329 (605)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~a~~~l~g~~~~~~~~l~~~v~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~e 329 (605)
..+.+. ...++++.++++++++.|+..+ +.|+ ...|.+..... .+..+...|
T Consensus 251 ~~~~~~--~~~~~~v~~a~~~a~~~L~~~G--------~~v~~~~~p~~~~~~~-----------------~~~~~~~~e 303 (476)
T 2gi3_A 251 PEEIYE--HDIEEGVSERFEEALKLLERLG--------AKVERVKIPHIKYSVA-----------------TYYVIAPAE 303 (476)
T ss_dssp EGGGGG--SCCCHHHHHHHHHHHHHHHHTT--------CEEEEECCTTGGGHHH-----------------HHHHHHHHH
T ss_pred ECcccc--CCCCHHHHHHHHHHHHHHHHCC--------CEEEEeCCCchHHHHH-----------------HHHHHHHHH
Confidence 555431 2346789999999999886332 2222 22333221110 011111112
Q ss_pred hHhhH-----------------HHHHHh-cCCCCChhHHHHHHHHhcCCH-----HHHHHHHHHHHHHHHHHHHHhCCCc
Q 007401 330 FKTIY-----------------EEWVKS-AKPRLGYNVFERVLEAINTTQ-----DNIKILYKVRNEMRAALQRLLKDDK 386 (605)
Q Consensus 330 ~~~~~-----------------~~~~~~-~~~~~~~~~~~~~~~~~~~s~-----~~~~~a~~~r~~~~~~~~~~~~~~D 386 (605)
....+ .+++.. ....+++.++.++..+..++. .+|.++++.|..+++.++++|+++|
T Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~a~~~r~~~~~~~~~~~~~~D 383 (476)
T 2gi3_A 304 ASSNLARFDGVKYGLRIKEKGLREMYMKTRNVGFGEEVRRRIMIGTFTLSAAYYEAYFNKAMKVRRKISDELNEVLSQYD 383 (476)
T ss_dssp HHTC------------------------CCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHhhccccccccccccHHHHHHhhhhhhcCHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 21111 112221 234577888888877755443 3788899999999999999999999
Q ss_pred EEEEeCCCCCCccCCcccccchhhhhchhhhcccccccCCceeeeecccCCCCCceeEEeeccCCchhHHhHHHHHHhH
Q 007401 387 ILVIPTVSDPPLKLNTKKTYSAEFHDRTLVLSSIGSMSGCCQVAIPIGKYNEHPISISFITYHGGDKFLLDTVLDLYDS 465 (605)
Q Consensus 387 vll~Pt~~~~ap~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~G~~~glp~g~~~~~~~~~d~~ll~~a~~l~~~ 465 (605)
+||+||+|.+||++++.......+. ...||.++|++|+|++|||+|+.+|||+|+|+++++++|..|++++..+++.
T Consensus 384 ~ll~Pt~~~~a~~~~~~~~~~~~~~--~~~~t~~~nl~G~PaisvP~g~~~GlPvGvqlvg~~~~d~~lL~~A~~lE~~ 460 (476)
T 2gi3_A 384 AILTPTSPVTAFKIGEIKDPLTYYL--MDIFTIPANLAGLPAISVPFGFSNNLPVGVQVIGRRFADGKVFRIARAIEKN 460 (476)
T ss_dssp EEEEESCSSCCCBTTTCCCHHHHHT--TTTTTHHHHHHTCCEEEEEEEEETTEEEEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred EEEeCCCCCCCCcccccccchhhhh--ccceeccccccCCceEEEecccCCCCCeEEEEEcCCCCHHHHHHHHHHHHHh
Confidence 9999999999999986211111121 1358999999999999999999999999999999999999999999998875
No 8
>1m22_A Peptide amidase, PAM; eleven-stranded beta sheet, covered double layers of alpha helices on TOP and bottom, hydrolase; HET: EPE; 1.40A {Stenotrophomonas maltophilia} SCOP: c.117.1.1 PDB: 1m21_A*
Probab=100.00 E-value=3.2e-87 Score=717.17 Aligned_cols=406 Identities=23% Similarity=0.281 Sum_probs=325.7
Q ss_pred HHHHhh-----hhHHHHHHHHHhhcCcccCC---CCcCceeeecccCCCCCCC-------CCCCCCCCCCceEEEeeccC
Q 007401 21 IGVSVV-----GFVVLAETLRRRRNPKLNGR---VDFGAFLERFELIPFPQPP-------PPAARQPLAGLKFAIKDVFD 85 (605)
Q Consensus 21 ~~~~~~-----~~~~~~~~~~~~~~~~~~~~---~~~~a~~~~~~~~a~~~a~-------~~~~~gpL~Gvp~~vKD~~~ 85 (605)
++.+|+ +.+|++|+++.+++||++.| |.+|||++..++ ++++|+ .+...||||||||+|||||+
T Consensus 12 ~~~~l~~~l~~g~~s~~el~~a~l~ri~~~~~~~~~lna~~~~~~~-Al~~A~~~d~~~~~g~~~gpL~GvPi~vKD~~~ 90 (503)
T 1m22_A 12 DVADLQARMTAGELDSTTLTQAYLQRIAALDRTGPRLRAVIELNPD-ALKEAAERDRERRDGRLRGPLHGIPLLLKDNIN 90 (503)
T ss_dssp CHHHHHHHHHTTSCCHHHHHHHHHHHHHHHTTSTTCCCCEEEECTT-HHHHHHHHHHHHHTTCCCSTTTTCEEEEETTBC
T ss_pred CHHHHHHHHHcCCCCHHHHHHHHHHHHHHhcCCCCceEEEEECCHH-HHHHHHHHHHHHHcCCCCCCcCCceeEeecccc
Confidence 455555 34999999999999999999 999999999877 665553 34567999999999999999
Q ss_pred CCCcccCCCchhhhhcCCCCCCChHHHHHHHhCCCeEeeecccccccc-----cCCCCCCCCCCCCCCCCCCCCCCCCch
Q 007401 86 VKGYVTGFGSPDWKRDHHEAERTAVVVTLLLKNGATCIGKTVLDEFAF-----GITGENKHYGTPVNPQMPSHIPGGSSS 160 (605)
Q Consensus 86 ~~G~~tt~Gs~~~~~~~~~~~~da~~V~rL~~aGai~~GKt~~~e~~~-----~~~~~n~~~G~~~NP~~~~~~~GGSSg 160 (605)
++|++||+||+.|.+ .++ +||++|+|||+|||||+||||||||++ +.+|+|++||+|+||||++|+||||||
T Consensus 91 v~G~~Tt~Gs~~~~~--~~~-~dA~vV~rLr~AGAii~GKTn~~Efa~~~~~~~~~~~n~~~G~t~NP~~~~~~pGGSSg 167 (503)
T 1m22_A 91 AAPMATSAGSLALQG--FRP-DDAYLVRRLRDAGAVVLGKTNLSEWANFRGNDSISGWSARGGQTRNPYRISHSPCGSSS 167 (503)
T ss_dssp CTTSCCCTTCGGGTT--CCC-CCCHHHHHHHHTTCEEEEEECCSHHHHCSCTTCCTTEETTTEECCCTTSTTBCCCSSSH
T ss_pred cCCCCcCCCCHhhcC--CCC-CCcHHHHHHHHCCCEEEeccCHHHHhcccCCCCCCCCCCCCCCCCCCCCCCCCCCccHH
Confidence 999999999999975 577 999999999999999999999999998 778999999999999999999999999
Q ss_pred HHHHHHHhcCCceeeccCCCCccchhhhhcccccccCCCCCccCCCCccCCCCCccccccccCHHHHHHHHHHHccCCCC
Q 007401 161 GSAVAVAAQLVDFALGTDTIGCVRVPASFCGILGYRPSHGTVSMIGVLPNSQSLDTVGLLARNASILHRVGHVLLQLNAV 240 (605)
Q Consensus 161 GsaaaVAag~~~~a~GtD~gGSiR~PAa~~Gv~GlkPt~G~v~~~G~~p~~~~~d~~G~~ar~~~d~~~v~~~~~~~~~~ 240 (605)
|||||||+|++|+|+|||||||||+||+||||||||||+||||+.|++|+++++|++|||+||++|++.+++++.+.+..
T Consensus 168 GsAaAVAag~~~~alGtDtgGSIRiPAa~cGvvGlKPT~Grvs~~G~~p~~~sld~~Gp~arsv~D~a~~l~vl~g~d~~ 247 (503)
T 1m22_A 168 GSAVAVAANLASVAIGTETDGSIVCPAAINGVVGLKPTVGLVSRDGIIPISFSQDTAGPMARSVADAAAVLTAIAGRDDA 247 (503)
T ss_dssp HHHHHHHTTSSSEEEEEESSSTTHHHHHHTTSEEEECCTTSSCCTTBCCSCTTTCEEEEEESSHHHHHHHHHHHCCCCTT
T ss_pred HHHHHHHcCCCceeeecCCCchhhhhHHHhCceEEECCCCCcCCCCcCCccCCCCeeCcccCCHHHHHHHHHHHcCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999865322
Q ss_pred Cc---------------------ccCceeeeccchhhhcCCchhhHHHHHHHHHHHHhCCCCCcccccccccc-ccCcch
Q 007401 241 EP---------------------RRARRLIFADDIFQLSKVPKLKTIHVISKAIESLSGYQNPEHMNVGQYIA-SNVPSL 298 (605)
Q Consensus 241 ~~---------------------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~~l~g~~~~~~~~l~~~v~-~~~p~~ 298 (605)
++ ..+.|+.+..+.+. .++++.++++++++.|+..+ +.|+ ..+|.+
T Consensus 248 d~~~~~~~~~~~~~~~~~~~~~~~~~lrIgv~~~~~~----~~~~v~~a~~~a~~~L~~~G--------~~v~~~~~p~~ 315 (503)
T 1m22_A 248 DPATATMPGRAVYDYTARLDPQGLRGKRIGLLQTPLL----KYRGMPPLIEQAATELRRAG--------AVVVPVELPNQ 315 (503)
T ss_dssp CGGGGGCTTCCCCCGGGGCCTTTTTTCEEEEECSGGG----GSTTHHHHHHHHHHHHHHTT--------CEEEEECCTTT
T ss_pred CccccccccccccchhhhccccCCCCCEEEEECcccc----CCHHHHHHHHHHHHHHHHcC--------CEEEEeCCCcH
Confidence 21 12345666555431 35678899999999886332 2222 222322
Q ss_pred hhhhhcCCCCCCchhHHHHHHHHHHHhhhhhhHhhHHHHHH---------------------hcCCCCChhHHHHHHHHh
Q 007401 299 KGLRAQSTSPENGTATLKALSSVMLSLQRYEFKTIYEEWVK---------------------SAKPRLGYNVFERVLEAI 357 (605)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~e~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~ 357 (605)
.++.. .+..+..+|+...+..|+. .....+++.++.++..+.
T Consensus 316 ~~~~~-----------------~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (503)
T 1m22_A 316 GAWAE-----------------AERTLLLYEFKAGLERYFNTHRAPLRSLADLIAFNQAHSKQELGLFGQELLVEADATA 378 (503)
T ss_dssp TTTHH-----------------HHHHHHHHHHHHHHHHHHHHTTCSCCSHHHHHHHHHHTHHHHSSSSCCHHHHHHHTCC
T ss_pred HHHHH-----------------HHHHHHHHHHHHHHHHHHHhcCcccccHHHHHHHhhhcchhcccccCHHHHHHHHhcC
Confidence 11100 0001111122221111111 113457888888888888
Q ss_pred cCCHHHHHHHHHHHHHHHHH--HHHHhCC--CcEEEEeCCCCCCccCCcccccchhhhhchhhhcccccccCCceeeeec
Q 007401 358 NTTQDNIKILYKVRNEMRAA--LQRLLKD--DKILVIPTVSDPPLKLNTKKTYSAEFHDRTLVLSSIGSMSGCCQVAIPI 433 (605)
Q Consensus 358 ~~s~~~~~~a~~~r~~~~~~--~~~~~~~--~Dvll~Pt~~~~ap~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~ 433 (605)
.++..+|.++++.|+++++. +.++|++ +|+||+||+ .++|+++.... .+ ...||.++|++|+|++|||+
T Consensus 379 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~D~ll~Pt~-~~a~~~~~~~~---~~---~~~~t~~~nl~G~PaisvP~ 451 (503)
T 1m22_A 379 GLADPAYIRARSDARRLAGPEGIDAALAAHQLDALVAPTT-GVAWPIRSEGD---DF---PGESYSAAAVAGYPSLTVPM 451 (503)
T ss_dssp CTTCHHHHHHHHHHHHHHTTTTHHHHHHHTTCSEEEEECC-CCCCBTTC------CC---TTCCHHHHHHHTCCEEEEEE
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCEEEeCCC-ccCcccccccC---cc---cccccccchhhCCCeEEecc
Confidence 88999999999888888766 9999974 999999999 56776652111 11 14689999999999999999
Q ss_pred ccCCCCCceeEEeeccCCchhHHhHHHHHHhHH
Q 007401 434 GKYNEHPISISFITYHGGDKFLLDTVLDLYDSL 466 (605)
Q Consensus 434 G~~~glp~g~~~~~~~~~d~~ll~~a~~l~~~~ 466 (605)
|+.+|+|+|+|+++++++|..|++++..++...
T Consensus 452 g~~~GlPvGvqlvg~~~~d~~lL~~A~~~E~~~ 484 (503)
T 1m22_A 452 GQIDGLPVGLLFMGTAWSEPKLIEMAYAYEQRT 484 (503)
T ss_dssp EEETTEEEEEEEECSTTCHHHHHHHHHHHHHHH
T ss_pred ccCCCCCeEEEEECCCCChHHHHHHHHHHHHhh
Confidence 999999999999999999999999999998754
No 9
>3a1k_A Amidase; AS family enzyme, hydrolase; 2.17A {Rhodococcus SP} PDB: 3a1i_A
Probab=100.00 E-value=2.6e-85 Score=701.82 Aligned_cols=414 Identities=23% Similarity=0.265 Sum_probs=323.7
Q ss_pred HHH-HHHHHHhhcCcccCCCCcCcee-eecccCCCCCCC----------------CCCCCCCCCCceEEEeeccCCCCcc
Q 007401 29 VVL-AETLRRRRNPKLNGRVDFGAFL-ERFELIPFPQPP----------------PPAARQPLAGLKFAIKDVFDVKGYV 90 (605)
Q Consensus 29 ~~~-~~~~~~~~~~~~~~~~~~~a~~-~~~~~~a~~~a~----------------~~~~~gpL~Gvp~~vKD~~~~~G~~ 90 (605)
++. +|+++.+++++++.++.+|+++ ...++++ .++. .+...||||||||+|||||+|+|++
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~a~~~~~~~~g~~~gpL~GvPi~vKD~i~v~G~~ 105 (521)
T 3a1k_A 27 RLEWPALIDGALGSYDVVDQLYADEATPPTTSRE-HAVPSASENPLSAWYVTTSIPPTSDGVLTGRRVAIKDNVTVAGVP 105 (521)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHHHSCCCCCCCC-EECCCTTTCTTSCEEEEEEECCSSCCTTTTCEEEEETTBCCTTSC
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcccccccCchhh-hhccccccchhhhhHHHHhhcCCCCCCCCCCEEEEEcCcccCCcc
Confidence 666 7777777777777776666666 3333322 1111 1445799999999999999999999
Q ss_pred cCCCchhhhhcCCCCCCChHHHHHHHhCCCeEeeecccccccccCCCCCCCCCCCCCCCCCCCCCCCCchHHHHHHHhcC
Q 007401 91 TGFGSPDWKRDHHEAERTAVVVTLLLKNGATCIGKTVLDEFAFGITGENKHYGTPVNPQMPSHIPGGSSSGSAVAVAAQL 170 (605)
Q Consensus 91 tt~Gs~~~~~~~~~~~~da~~V~rL~~aGai~~GKt~~~e~~~~~~~~n~~~G~~~NP~~~~~~~GGSSgGsaaaVAag~ 170 (605)
||+||+.|.+ .++.+||++|+|||+|||||+||||||||+++.+|+|++||+|+||||++|+|||||||||||||+|+
T Consensus 106 Tt~Gs~~~~~--~~~~~DA~vV~rLr~AGAvilGKTn~~Efa~~~~~~n~~~G~t~NP~~~~~~pGGSSgGSAAAVAag~ 183 (521)
T 3a1k_A 106 MMNGSRTVEG--FTPSRDATVVTRLLAAGATVAGKAVCEDLCFSGSSFTPASGPVRNPWDRQREAGGSSGGSAALVANGD 183 (521)
T ss_dssp BCTTCTTTTT--BCCSSCCHHHHHHHHTTCEEEEEECCCGGGCCSSSSCCTTCCCEETTEEEEECCSSSHHHHHHHHTTS
T ss_pred cCCCChhhcC--CCCCCchHHHHHHHHCCCEEEEeeChhhHhhCCCCCCCCCCCcCCCCCCCCCCCCCCchHHHHHhcCC
Confidence 9999999975 57889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceeeccCCCCccchhhhhcccccccCCCCCccCCCCccCCCCCccccccccCHHHHHHHHHHHccCCCCCc--------
Q 007401 171 VDFALGTDTIGCVRVPASFCGILGYRPSHGTVSMIGVLPNSQSLDTVGLLARNASILHRVGHVLLQLNAVEP-------- 242 (605)
Q Consensus 171 ~~~a~GtD~gGSiR~PAa~~Gv~GlkPt~G~v~~~G~~p~~~~~d~~G~~ar~~~d~~~v~~~~~~~~~~~~-------- 242 (605)
+|+|+|||||||||+||+||||||||||+||||+.|++|+++++|++|||+||++|++.+++++.+.+..++
T Consensus 184 ~~~alGtDtgGSIR~PAa~cGvvGlKPT~Grvs~~G~~p~~~sld~~Gp~aRsv~D~a~~l~vlag~d~~D~~~~~~~~~ 263 (521)
T 3a1k_A 184 VDFAIGGDQGGSIRIPAAFCGVVGHKPTFGLVPYTGAFPIERTIDHLGPITRTVHDAALMLSVIAGRDGNDPRQADSVEA 263 (521)
T ss_dssp SSEEEEEESSSTTHHHHHHHTSEEEECSTTTSCCTTBCCSCGGGCEEEEEESSHHHHHHHHHHHCSCCSSCTTSCTTCCC
T ss_pred cceecccCCCCCCCcChHHcCCeeEecCCCcCCCCCCCCcccccCeeCceeCcHHHHHHHHHHHhCCCCCCccccccCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999987543221
Q ss_pred ----------ccCceeeeccchhhhcCCchhhHHHHHHHHHHHHhCCCCCccccccccccc-cCcchhhhhhcCCCCCCc
Q 007401 243 ----------RRARRLIFADDIFQLSKVPKLKTIHVISKAIESLSGYQNPEHMNVGQYIAS-NVPSLKGLRAQSTSPENG 311 (605)
Q Consensus 243 ----------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~~l~g~~~~~~~~l~~~v~~-~~p~~~~~~~~~~~~~~~ 311 (605)
..+.|+.++.+.+.. ...++++.++++++++.|+.. |+.|++ .+|.+......
T Consensus 264 ~~~~~~l~~~~~~lrIgv~~~~~~~-~~~~~~v~~a~~~a~~~L~~~--------Ga~v~ev~~p~~~~~~~~------- 327 (521)
T 3a1k_A 264 GDYLSTLDSDVDGLRIGIVREGFGH-AVSQPEVDDAVRAAAHSLTEI--------GCTVEEVNIPWHLHAFHI------- 327 (521)
T ss_dssp CCSSTTTTSCCTTCEEEEEGGGSCC-SSSCHHHHHHHHHHHHGGGGG--------TCEEEEECCTHHHHHHHH-------
T ss_pred cchhhhhccCccCcEEEEECccccc-cCCCHHHHHHHHHHHHHHHHC--------CCEEEEeCCCchHhHHHH-------
Confidence 122355555543321 123578999999999988633 333322 33332211100
Q ss_pred hhHHHHH--HHHHHHhh-------------hhhhHhhHHHHHHhcCCCCChhHHHHHHHHh----cCCHHHHHHHHHHHH
Q 007401 312 TATLKAL--SSVMLSLQ-------------RYEFKTIYEEWVKSAKPRLGYNVFERVLEAI----NTTQDNIKILYKVRN 372 (605)
Q Consensus 312 ~~~~~~~--~~~~~~l~-------------~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~s~~~~~~a~~~r~ 372 (605)
+..+ .+....+. ..+....+..|.......+++.++.++..+. .++..+|.++++.|.
T Consensus 328 ---~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~~~~~~~a~~~r~ 404 (521)
T 3a1k_A 328 ---WNVIATDGGAYQMLDGNGYGMNAEGLYDPELMAHFASRRIQHADALSETVKLVALTGHHGITTLGGASYGKARNLVP 404 (521)
T ss_dssp ---HHHHHHHHHHHHTTTTTTTCSSSCSCCCHHHHHHHHHHHHHSGGGSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHhhhhhccccccchhhhhhHHHHHHHHHHhhhhhhhcCHHHHHHHHhchhhhccCCHHHHHHHHHHHH
Confidence 0000 00001110 0122233445555556678999998887764 356779999999999
Q ss_pred HHHHHHHHHhCCCcEEEEeCCCCCCccCCcccccchhhhh---chhhhcccccccCCceeeeecccCCCCCceeEEeecc
Q 007401 373 EMRAALQRLLKDDKILVIPTVSDPPLKLNTKKTYSAEFHD---RTLVLSSIGSMSGCCQVAIPIGKYNEHPISISFITYH 449 (605)
Q Consensus 373 ~~~~~~~~~~~~~Dvll~Pt~~~~ap~~~~~~~~~~~~~~---~~~~~t~~~nl~G~PaisvP~G~~~glp~g~~~~~~~ 449 (605)
.+++.++++|+++|+||+||+|.+||++++.......+.. .++.||.++|++|+|++|||+|+.+|+|+|+|+++++
T Consensus 405 ~~~~~~~~~~~~~Dvll~Pt~p~~a~~~~~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~~~GlPvGlQlvg~~ 484 (521)
T 3a1k_A 405 LARAAYDTALRQFDVLVMPTLPYVASELPAKDVDRATFITKALGMIANTAPFDVTGHPSLSVPAGLVNGLPVGMMITGRH 484 (521)
T ss_dssp HHHHHHHHHHHHCSEEEEESCSSCCCBCCCTTCCHHHHHHHHHTTCTTTHHHHHHCCCEEEEEEEEETTEEEEEEEECST
T ss_pred HHHHHHHHHhcCCCEEEECCCCCCCcccccccCchhhHHHHHHhhhcccccchhcCCCcEEeecccCCCCCeeEEEEcCC
Confidence 9999999999999999999999999999864322211111 2346799999999999999999999999999999999
Q ss_pred CCchhHHhHHHHHHh
Q 007401 450 GGDKFLLDTVLDLYD 464 (605)
Q Consensus 450 ~~d~~ll~~a~~l~~ 464 (605)
++|..+++++..+++
T Consensus 485 ~~d~~LL~~A~~~E~ 499 (521)
T 3a1k_A 485 FDDATVLRVGRAFEK 499 (521)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999999999987
No 10
>3ppm_A Fatty-acid amide hydrolase 1; protein-inhibitor complex, FAAH, oxazole, oxadiazole, endoca degradation, membrane protein; HET: JG1 1DO; 1.78A {Rattus norvegicus} PDB: 2wj2_A* 3k7f_A* 3k83_A* 3k84_A* 3lj6_A* 3lj7_A 3oj8_A* 2wj1_A* 3pr0_A* 2wap_A* 1mt5_A* 2vya_A* 3qk5_A* 3qj8_A* 3qj9_A* 3qkv_A*
Probab=100.00 E-value=8.7e-84 Score=691.60 Aligned_cols=441 Identities=16% Similarity=0.174 Sum_probs=330.8
Q ss_pred ecCCCCchhHHHHHHHhhhh-----HHHHHHHHHhhcCcccCCCCcCceeeecccCCCCCCCCCCCCCCCCCceEEEeec
Q 007401 9 KTNTSNPKVWVVIGVSVVGF-----VVLAETLRRRRNPKLNGRVDFGAFLERFELIPFPQPPPPAARQPLAGLKFAIKDV 83 (605)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~a~~~a~~~~~~gpL~Gvp~~vKD~ 83 (605)
.+.+...+++..|+++|++. +|++|+++++++||.+.|+.+|||++.+++. .++++.....||||||||+||||
T Consensus 60 ~~~~~~~~i~~~~~~~l~~~l~~g~~s~~ev~~a~l~ri~~~~~~~na~~~~~~~a-~~~a~~~~~~gpL~GvPi~vKD~ 138 (573)
T 3ppm_A 60 NPDLDSEALLTLPLLQLVQKLQSGELSPEAVFFTYLGKAWEVNKGTNCVTSYLTDC-ETQLSQAPRQGLLYGVPVSLKEC 138 (573)
T ss_dssp CTTCCHHHHHHSCHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHCCEEEECTTH-HHHHHHCCTTCTTTTCEEEEETT
T ss_pred CCCCChhhhhhCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCccCEEEEECHHH-HHHHHhhhhcCCcCCCeEEEEcc
Confidence 34455567777789888855 9999999999999999999999999987653 22222223359999999999999
Q ss_pred cCCCCcccCCCchhhhhcCCCCCCChHHHHHHHhCCCeEeeecccccccccCCCCCCCCCCCCCCCCCCCCCCCCchHHH
Q 007401 84 FDVKGYVTGFGSPDWKRDHHEAERTAVVVTLLLKNGATCIGKTVLDEFAFGITGENKHYGTPVNPQMPSHIPGGSSSGSA 163 (605)
Q Consensus 84 ~~~~G~~tt~Gs~~~~~~~~~~~~da~~V~rL~~aGai~~GKt~~~e~~~~~~~~n~~~G~~~NP~~~~~~~GGSSgGsa 163 (605)
|+++|++||+||..|.+ .++.+||++|+||++||||++||||||||+++.+|.|++||+|+||||++++|||||||||
T Consensus 139 ~~~~G~~tt~Gs~~~~~--~~~~~da~vV~~L~~aGAv~~gKTn~pe~~~~~~~~n~~~G~t~NP~~~~~~~GGSSgGsa 216 (573)
T 3ppm_A 139 FSYKGHDSTLGLSLNEG--MPSESDCVVVQVLKLQGAVPFVHTNVPQSMFSYDCSNPLFGQTMNPWKSSKSPGGSSGGEG 216 (573)
T ss_dssp BCCBTCCCCTTCGGGTT--CCBSSCCHHHHHHHHTTCEEEEEECCCTTSCSSSCEETTTEECCCTTCTTBCCCSSSHHHH
T ss_pred cCCCCCCcCCcChhhcC--CCCCcchHHHHHHHHCCCEEEEecCCccccccCCCCCCCCCCcCCCCCCCCCCCCCCchHH
Confidence 99999999999999975 6788999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCceeeccCCCCccchhhhhcccccccCCCCCccCCCCccCCCC----CccccccccCHHHHHHHHHHHccCC-
Q 007401 164 VAVAAQLVDFALGTDTIGCVRVPASFCGILGYRPSHGTVSMIGVLPNSQS----LDTVGLLARNASILHRVGHVLLQLN- 238 (605)
Q Consensus 164 aaVAag~~~~a~GtD~gGSiR~PAa~~Gv~GlkPt~G~v~~~G~~p~~~~----~d~~G~~ar~~~d~~~v~~~~~~~~- 238 (605)
||||+|++|+|+|||||||||+||+||||||||||+||||+.|++|.+.+ +|++|||+||++|++.+++++.+.+
T Consensus 217 aaVAag~~~~alGtDtgGSIRiPAa~cGv~GlKPT~Grvs~~G~~~~~~~~~~~~~~~Gp~arsv~D~a~~l~~l~~~d~ 296 (573)
T 3ppm_A 217 ALIGSGGSPLGLGTDIGGSIRFPSAFCGICGLKPTGNRLSKSGLKGCVYGQTAVQLSLGPMARDVESLALCLKALLCEHL 296 (573)
T ss_dssp HHHHTTSCSEEEEEESSSTTHHHHHHHTCEEEECCGGGSCCTTBCCSCCSCCSSCCEEEEEESSHHHHHHHHHHHSSHHH
T ss_pred HHHHcCCCcEEEecCCCcchhhhhHHhCeeEEeCCCCcccCCCCCCcccccCcccccccceeCcHHHHHHHHHHHhcccc
Confidence 99999999999999999999999999999999999999999999998765 8999999999999999999876421
Q ss_pred -----------CC----CcccCceeeeccchhhhcCCchhhHHHHHHHHHHHHhCCCCCccccccccc-cccCcchhhhh
Q 007401 239 -----------AV----EPRRARRLIFADDIFQLSKVPKLKTIHVISKAIESLSGYQNPEHMNVGQYI-ASNVPSLKGLR 302 (605)
Q Consensus 239 -----------~~----~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~~l~g~~~~~~~~l~~~v-~~~~p~~~~~~ 302 (605)
+. ....+.++++..+.. ...+++++.++++++++.|+..+ +.| +..+|.+.+..
T Consensus 297 ~~~d~~~~~~~~~~~~~~~~~~lrigv~~~~~--~~~~~p~v~~a~~~a~~~L~~~G--------~~v~~~~~p~~~~~~ 366 (573)
T 3ppm_A 297 FTLDPTVPPLPFREEVYRSSRPLRVGYYETDN--YTMPSPAMRRALIETKQRLEAAG--------HTLIPFLPNNIPYAL 366 (573)
T ss_dssp HHHCTTSCCCCCCHHHHTCCCCCEEEECSCCS--SSCCCHHHHHHHHHHHHHHHHTT--------CEEEECCCTTHHHHH
T ss_pred cccCCCCCccccchhhcccCCCCEEEEEcccC--CCCCCHHHHHHHHHHHHHHHHCC--------CEEEEecCccHHHHH
Confidence 10 012234566554432 12346789999999999986322 222 22334332211
Q ss_pred hcC----CCCCCchhHHHHHHH-----HHH-HhhhhhhHhhHHHHHHhcCCCCChhHHHHHHHHhcCCHHHHHHHHHHHH
Q 007401 303 AQS----TSPENGTATLKALSS-----VML-SLQRYEFKTIYEEWVKSAKPRLGYNVFERVLEAINTTQDNIKILYKVRN 372 (605)
Q Consensus 303 ~~~----~~~~~~~~~~~~~~~-----~~~-~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~a~~~r~ 372 (605)
... ...+........+.. ... ..............+......+.|.+...+..+...+..+++++...|.
T Consensus 367 ~~~~~~~~~~dg~~~~~~~~~~e~~~p~~~~~~~~~~lp~~l~~~~~~~~~~~~p~~~~~~~~~~~~s~~e~~~~~~~r~ 446 (573)
T 3ppm_A 367 EVLSTGGLFSDGGRSFLQNFKGDFVDPCLGDLILILRLPSWFKRLLSLLLKPLFPRLAAFLNNMRPRSAEKLWKLQHEIE 446 (573)
T ss_dssp HTHHHHHHTTBTTHHHHGGGTTSCCCGGGTTHHHHHTSCHHHHHHHHHHHTTTCHHHHHHHHHTSBCBHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhHHHHHHHhccCcccHHHHHHhhhccchHHHHHHHHHHhhhcchHHHHHHhhcccccHHHHHHHHHHHH
Confidence 100 000000000000000 000 0000000000011111111234455555566667788999999999999
Q ss_pred HHHHHHHHHhC--CCcEEEEeCCCCCCccCCcccccchhhhhchhhhcccccccCCceeeeecccC--------------
Q 007401 373 EMRAALQRLLK--DDKILVIPTVSDPPLKLNTKKTYSAEFHDRTLVLSSIGSMSGCCQVAIPIGKY-------------- 436 (605)
Q Consensus 373 ~~~~~~~~~~~--~~Dvll~Pt~~~~ap~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~G~~-------------- 436 (605)
.+++.+.+.|. ++|+||+|+ +.+|++++.... ...+..||.+||++|+|+++||+|+.
T Consensus 447 ~~r~~~~~~w~~~~lDaLL~Pt-~~pA~~h~~~~~-----~~~~~~YT~l~NLLDyPA~vVPvg~v~~~~d~~~~~~~~~ 520 (573)
T 3ppm_A 447 MYRQSVIAQWKAMNLDVLLTPM-LGPALDLNTPGR-----ATGAVSYTMLYNCLDFPAGVVPVTTVTAEDDAQMELYKGY 520 (573)
T ss_dssp HHHHHHHHHHHHTTCSEEEEEC-CCSCCBTTCGGG-----CGGGGHHHHHHHHTTCCEEEEEEEECCHHHHHHHTTCCCS
T ss_pred HHHHHHHHHHhhcCCCEeeCCC-CCCCcCCccccc-----cccccchhhhhHhhCCCeEEEecccccccccccccccccc
Confidence 99999999995 599999999 558888874211 11345799999999999999999953
Q ss_pred ----------------CCCCceeEEeeccCCchhHHhHHHHHHhHHHH
Q 007401 437 ----------------NEHPISISFITYHGGDKFLLDTVLDLYDSLQE 468 (605)
Q Consensus 437 ----------------~glp~g~~~~~~~~~d~~ll~~a~~l~~~~~e 468 (605)
+|+|+|+|+++++++|+.+++++..+++.+..
T Consensus 521 ~~~~~d~~~~~~~~~~~GlPVgVQiVGrr~~EEklL~~a~~IE~~l~~ 568 (573)
T 3ppm_A 521 FGDIWDIILKKAMKNSVGLPVAVQCVALPWQEELCLRFMREVEQLMTP 568 (573)
T ss_dssp SCSHHHHHHHHHTCSCTTCEEEEEEECCTTCHHHHHHHHHHHHHHHCT
T ss_pred cchhhhhhhhhhhhccCCCceEEEEeCCCCcHHHHHHHHHHHHHHHhc
Confidence 69999999999999999999999999876543
No 11
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.82 E-value=3.6e-19 Score=154.67 Aligned_cols=118 Identities=31% Similarity=0.461 Sum_probs=114.6
Q ss_pred CChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 007401 484 GSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRR 563 (605)
Q Consensus 484 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 563 (605)
-+|+.++.+.++|+.+++.|+|++|++.|+++++++|+++.+|+++|.+|+.+|++++|+++|+++++++|+++.+|+++
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l 87 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRK 87 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence 36899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 007401 564 GTAREALFCYNEALQDFKHAMVLEPQNKAANLAEKRLR 601 (605)
Q Consensus 564 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 601 (605)
|.++..+|++++|+++|+++++++|++..++..++.++
T Consensus 88 g~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~l 125 (126)
T 4gco_A 88 AACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNCL 125 (126)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence 99999999999999999999999999999999988764
No 12
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.71 E-value=2.4e-16 Score=141.06 Aligned_cols=111 Identities=15% Similarity=0.089 Sum_probs=107.0
Q ss_pred CCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHH
Q 007401 481 DTNGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAY 560 (605)
Q Consensus 481 ~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 560 (605)
...-.|+....++.+|..+++.|+|++|+..|++++.++|+++.+|+++|.+|..+|+|++|+++|+++++++|+++.+|
T Consensus 28 al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~ 107 (151)
T 3gyz_A 28 INAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPV 107 (151)
T ss_dssp GCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHH
T ss_pred HhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHH
Confidence 34557899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhCCCCH
Q 007401 561 LRRGTAREALFCYNEALQDFKHAMVLEPQNK 591 (605)
Q Consensus 561 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 591 (605)
+++|.+|..+|++++|+.+|++++++.|+..
T Consensus 108 ~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 108 FHTGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 9999999999999999999999999999765
No 13
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.71 E-value=9.3e-17 Score=143.90 Aligned_cols=122 Identities=13% Similarity=0.024 Sum_probs=114.8
Q ss_pred CChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 007401 484 GSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRR 563 (605)
Q Consensus 484 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 563 (605)
..|+....++.+|.+|++.|+|++|+++|+++++++|+++.+|+++|.+|..+|++++|+.+|+++++++|+++.+|+++
T Consensus 26 ~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 105 (150)
T 4ga2_A 26 SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTDKAVECYRRSVELNPTQKDLVLKI 105 (150)
T ss_dssp SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 35677888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHccCHHHHHHH-HHHHHHhCCCCHHHHHHHHHHHHhhC
Q 007401 564 GTAREALFCYNEALQD-FKHAMVLEPQNKAANLAEKRLRKLIG 605 (605)
Q Consensus 564 a~~~~~~g~~~~A~~~-~~~al~~~p~~~~~~~~~~~~~~~~g 605 (605)
|.+|...|++++|.+. ++++++++|+++.++...+.++...|
T Consensus 106 a~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 106 AELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEG 148 (150)
T ss_dssp HHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCC
T ss_pred HHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence 9999999999887765 59999999999999999999887665
No 14
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.71 E-value=2.8e-16 Score=135.85 Aligned_cols=118 Identities=31% Similarity=0.412 Sum_probs=113.9
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 007401 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTA 566 (605)
Q Consensus 487 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~ 566 (605)
..++.|+.+|..+++.|+|++|+..|+++++++|+++.+|+++|.+|+.++++++|+.+|+++++++|+++.+|+++|.+
T Consensus 2 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 81 (126)
T 3upv_A 2 MKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATA 81 (126)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHccCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHhh
Q 007401 567 REALFCYNEALQDFKHAMVLE------PQNKAANLAEKRLRKLI 604 (605)
Q Consensus 567 ~~~~g~~~~A~~~~~~al~~~------p~~~~~~~~~~~~~~~~ 604 (605)
+..+|++++|+++|+++++++ |++..++..+..+...+
T Consensus 82 ~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~~l 125 (126)
T 3upv_A 82 QIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQQR 125 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHC
T ss_pred HHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHHhh
Confidence 999999999999999999999 99999999999887764
No 15
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.68 E-value=1.4e-16 Score=141.32 Aligned_cols=115 Identities=17% Similarity=0.233 Sum_probs=105.6
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-------CHH-----HHHHHHHHHHHcCCHHHHHHHHHHHHhc--
Q 007401 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGT-------SAT-----YYSNRAAAYLELGCFQQAEEDCSKTISL-- 552 (605)
Q Consensus 487 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-------~~~-----~~~~la~~~~~~~~~~~A~~~~~~al~~-- 552 (605)
..+..+.++|+.+++.|+|++|+..|+++++++|+ +.. +|.++|.++..+|+|++|+.+|++++++
T Consensus 9 ~~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n 88 (159)
T 2hr2_A 9 VGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFN 88 (159)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhh
Confidence 46788999999999999999999999999999999 544 9999999999999999999999999999
Q ss_pred -----CCCCHHHH----HHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 007401 553 -----DKKNVKAY----LRRGTAREALFCYNEALQDFKHAMVLEPQNKAANLAEKRLR 601 (605)
Q Consensus 553 -----~p~~~~~~----~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 601 (605)
+|++..+| +++|.++..+|++++|+++|+++++++|++..+...+..+.
T Consensus 89 ~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~~~ 146 (159)
T 2hr2_A 89 RRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERMM 146 (159)
T ss_dssp HHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHHHH
T ss_pred ccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Confidence 99999999 99999999999999999999999999998865555444443
No 16
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.67 E-value=1.6e-15 Score=135.45 Aligned_cols=116 Identities=14% Similarity=0.074 Sum_probs=108.8
Q ss_pred ChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 007401 485 SIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRG 564 (605)
Q Consensus 485 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la 564 (605)
.|.....++.+|..++..|+|++|+..|++++..+|+++.+|+++|.++..+|++++|+++|+++++++|+++.+++++|
T Consensus 17 ~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg 96 (148)
T 2vgx_A 17 SSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAA 96 (148)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHH
T ss_pred CHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHH
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 007401 565 TAREALFCYNEALQDFKHAMVLEPQNKAANLAEKRL 600 (605)
Q Consensus 565 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 600 (605)
.+|..+|++++|+++|+++++++|+++........+
T Consensus 97 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 132 (148)
T 2vgx_A 97 ECLLQXGELAEAESGLFLAQELIANXPEFXELSTRV 132 (148)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHTTCGGGHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCcCCCcchHHHHHH
Confidence 999999999999999999999999876654444443
No 17
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.66 E-value=1.4e-15 Score=138.03 Aligned_cols=113 Identities=31% Similarity=0.450 Sum_probs=107.7
Q ss_pred CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHH
Q 007401 483 NGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLR 562 (605)
Q Consensus 483 ~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 562 (605)
...+..+..|+.+|..+++.|+|++|+.+|+++++++|++..+|+++|.+|+.+++|++|+.+|+++++++|+++.+|++
T Consensus 5 ~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 84 (164)
T 3sz7_A 5 MAPTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSR 84 (164)
T ss_dssp SSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred chhhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHH
Q 007401 563 RGTAREALFCYNEALQDFKHAMVLEPQNKAANL 595 (605)
Q Consensus 563 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 595 (605)
+|.+|..+|++++|+++|+++++++|++..++.
T Consensus 85 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 117 (164)
T 3sz7_A 85 LGLARFDMADYKGAKEAYEKGIEAEGNGGSDAM 117 (164)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHSSSCCHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHhCCCchHHHH
Confidence 999999999999999999999999999977433
No 18
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.66 E-value=1.6e-15 Score=131.72 Aligned_cols=114 Identities=31% Similarity=0.389 Sum_probs=103.3
Q ss_pred hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-------HH
Q 007401 486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKN-------VK 558 (605)
Q Consensus 486 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~-------~~ 558 (605)
.+.+..+.++|+.++++|+|++|+++|+++++++|+++.+|+++|.+|+.+++|++|+++|+++++++|++ ..
T Consensus 5 ~d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~ 84 (127)
T 4gcn_A 5 TDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAK 84 (127)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHH
Confidence 46688999999999999999999999999999999999999999999999999999999999999998865 35
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 007401 559 AYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAANLAEKRL 600 (605)
Q Consensus 559 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 600 (605)
+|+++|.++..+|++++|+++|+++++..|+ +.....+..+
T Consensus 85 ~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~-~~~~~~l~~l 125 (127)
T 4gcn_A 85 AMSRAGNAFQKQNDLSLAVQWFHRSLSEFRD-PELVKKVKEL 125 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSCC-HHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC-HHHHHHHHHh
Confidence 8999999999999999999999999999885 5555444443
No 19
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.66 E-value=1.9e-15 Score=133.77 Aligned_cols=121 Identities=20% Similarity=0.202 Sum_probs=112.1
Q ss_pred CCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHH
Q 007401 482 TNGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYL 561 (605)
Q Consensus 482 ~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 561 (605)
....|.....++.+|..+++.|+|++|+..|++++..+|+++.+|+++|.+|..+++|++|+.+|+++++++|+++.+++
T Consensus 11 l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 90 (142)
T 2xcb_A 11 RGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPF 90 (142)
T ss_dssp TTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHH
T ss_pred HcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHH
Confidence 34568889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 007401 562 RRGTAREALFCYNEALQDFKHAMVLEPQNKAANLAEKRLRK 602 (605)
Q Consensus 562 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 602 (605)
++|.++..+|++++|+++|+++++++|+++........+..
T Consensus 91 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 131 (142)
T 2xcb_A 91 HAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAARAGA 131 (142)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHH
Confidence 99999999999999999999999999988766555554443
No 20
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.66 E-value=1.4e-15 Score=137.73 Aligned_cols=119 Identities=28% Similarity=0.442 Sum_probs=110.8
Q ss_pred ChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh------------------CCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 007401 485 SIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKL------------------NGTSATYYSNRAAAYLELGCFQQAEEDC 546 (605)
Q Consensus 485 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~------------------~p~~~~~~~~la~~~~~~~~~~~A~~~~ 546 (605)
....+..+.++|+.+++.|+|++|+..|++++.+ +|.+..+|+++|.||+.+++|++|+.++
T Consensus 7 ~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~ 86 (162)
T 3rkv_A 7 KLKSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETS 86 (162)
T ss_dssp -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 3467899999999999999999999999999999 7778899999999999999999999999
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHh
Q 007401 547 SKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNK-AANLAEKRLRKL 603 (605)
Q Consensus 547 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~~~~~~~~ 603 (605)
+++++++|+++.+|+++|.+|..+|++++|+.+|+++++++|++. .+...+..+...
T Consensus 87 ~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~ 144 (162)
T 3rkv_A 87 SEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTER 144 (162)
T ss_dssp HHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHH
T ss_pred HHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999998 667777776554
No 21
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.62 E-value=6e-15 Score=164.93 Aligned_cols=146 Identities=16% Similarity=0.131 Sum_probs=123.4
Q ss_pred HHhHHHHHH--hHHHHHHhhhccCCCCCCCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 007401 455 LLDTVLDLY--DSLQEQVNIASNLVPLPDTNGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAA 532 (605)
Q Consensus 455 ll~~a~~l~--~~~~e~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 532 (605)
+..++..+. ..+.+++....+.. ..+|+.+..|+++|.++.++|++++|+++|+++++++|+++.+|+++|.+
T Consensus 12 l~nLG~~~~~~G~~~eAi~~~~kAl-----~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~ 86 (723)
T 4gyw_A 12 LNNLANIKREQGNIEEAVRLYRKAL-----EVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNT 86 (723)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH-----HHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH-----HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 334443333 33566666665543 23456788999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhhC
Q 007401 533 YLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAANLAEKRLRKLIG 605 (605)
Q Consensus 533 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g 605 (605)
|.++|++++|+++|+++++++|+++.+|+++|.+|..+|++++|+++|+++++++|++..++..++.++..+|
T Consensus 87 l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g 159 (723)
T 4gyw_A 87 LKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVC 159 (723)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTT
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcc
Confidence 9999999999999999999999999999999999999999999999999999999999999999998887664
No 22
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.60 E-value=8.5e-15 Score=163.72 Aligned_cols=122 Identities=20% Similarity=0.201 Sum_probs=117.7
Q ss_pred CChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 007401 484 GSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRR 563 (605)
Q Consensus 484 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 563 (605)
..|+.++.|.++|.++.++|++++|+++|+++++++|+++.+|+++|.+|.++|++++|+++|+++++++|+++.+|+++
T Consensus 4 s~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nL 83 (723)
T 4gyw_A 4 SCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNM 83 (723)
T ss_dssp --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 46889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhhC
Q 007401 564 GTAREALFCYNEALQDFKHAMVLEPQNKAANLAEKRLRKLIG 605 (605)
Q Consensus 564 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g 605 (605)
|.+|.++|++++|+++|+++++++|++..++..++.++..+|
T Consensus 84 g~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g 125 (723)
T 4gyw_A 84 GNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSG 125 (723)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 999999999999999999999999999999999999988765
No 23
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.59 E-value=2.3e-14 Score=123.99 Aligned_cols=124 Identities=34% Similarity=0.456 Sum_probs=117.7
Q ss_pred CCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHH
Q 007401 482 TNGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYL 561 (605)
Q Consensus 482 ~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 561 (605)
....+.....|+.+|..++..|+|++|+..|+++++.+|++..+++++|.++...+++++|+++++++++++|+++.+++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~ 88 (133)
T 2lni_A 9 SHMNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYT 88 (133)
T ss_dssp CCSSSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred CCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHH
Confidence 34456789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhhC
Q 007401 562 RRGTAREALFCYNEALQDFKHAMVLEPQNKAANLAEKRLRKLIG 605 (605)
Q Consensus 562 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g 605 (605)
++|.++..+|++++|+++|+++++++|++..++..++.++...|
T Consensus 89 ~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 89 RKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999998887654
No 24
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.59 E-value=6.7e-14 Score=120.28 Aligned_cols=122 Identities=35% Similarity=0.506 Sum_probs=117.0
Q ss_pred CChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 007401 484 GSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRR 563 (605)
Q Consensus 484 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 563 (605)
..+..+..++.+|..++..|++++|+..|++++..+|++..++..+|.++...+++++|++.++++++++|+++.+++.+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 86 (131)
T 2vyi_A 7 EDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRM 86 (131)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred cchhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHH
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhhC
Q 007401 564 GTAREALFCYNEALQDFKHAMVLEPQNKAANLAEKRLRKLIG 605 (605)
Q Consensus 564 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g 605 (605)
|.++...|++++|+..|+++++++|++..++..++.++..+|
T Consensus 87 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 128 (131)
T 2vyi_A 87 GLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLR 128 (131)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999887664
No 25
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.59 E-value=1.8e-14 Score=137.48 Aligned_cols=146 Identities=18% Similarity=0.137 Sum_probs=125.5
Q ss_pred hHHhHHHHHHh--HHHHHHhhhccCCCCCCCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 007401 454 FLLDTVLDLYD--SLQEQVNIASNLVPLPDTNGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAA 531 (605)
Q Consensus 454 ~ll~~a~~l~~--~~~e~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 531 (605)
.....+..+.. ...++.....+.. ...|.....++.+|.++.+.|++++|+..|+++++++|+++.+++++|.
T Consensus 7 ~~~~lg~~~~~~g~~~~A~~~~~~al-----~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~ 81 (217)
T 2pl2_A 7 NPLRLGVQLYALGRYDAALTLFERAL-----KENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSE 81 (217)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH-----TTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH-----HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 33444444433 3455555554443 3356678899999999999999999999999999999999999999999
Q ss_pred HHHHc-----------CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 007401 532 AYLEL-----------GCFQQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAANLAEKRL 600 (605)
Q Consensus 532 ~~~~~-----------~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 600 (605)
++..+ |++++|+..|+++++++|+++.+++++|.++..+|++++|++.|+++++++ +++.++..++.+
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~la~~ 160 (217)
T 2pl2_A 82 AYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE-DTPEIRSALAEL 160 (217)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHHHHHHH
T ss_pred HHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cchHHHHHHHHH
Confidence 99999 999999999999999999999999999999999999999999999999999 999999999998
Q ss_pred HHhhC
Q 007401 601 RKLIG 605 (605)
Q Consensus 601 ~~~~g 605 (605)
+..+|
T Consensus 161 ~~~~g 165 (217)
T 2pl2_A 161 YLSMG 165 (217)
T ss_dssp HHHHT
T ss_pred HHHcC
Confidence 87664
No 26
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.58 E-value=3.5e-14 Score=135.42 Aligned_cols=120 Identities=16% Similarity=0.099 Sum_probs=112.6
Q ss_pred ChHHHHHHHHHHHHHHHC-----------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 007401 485 SIDASELLKEKGNAAFKG-----------KQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLD 553 (605)
Q Consensus 485 ~~~~a~~~~~~g~~~~~~-----------g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 553 (605)
.|+....++.+|.++... |++++|+..|+++++++|+++.+++++|.++..+|++++|++.|+++++++
T Consensus 69 ~P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 148 (217)
T 2pl2_A 69 TPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE 148 (217)
T ss_dssp CTTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred CCCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc
Confidence 466788999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhhC
Q 007401 554 KKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAANLAEKRLRKLIG 605 (605)
Q Consensus 554 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g 605 (605)
+++.+++++|.++..+|++++|+..|+++++++|++..++..++.++...|
T Consensus 149 -~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g 199 (217)
T 2pl2_A 149 -DTPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKG 199 (217)
T ss_dssp -CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC--
T ss_pred -cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcc
Confidence 999999999999999999999999999999999999999999998876654
No 27
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.58 E-value=1.9e-14 Score=136.22 Aligned_cols=115 Identities=22% Similarity=0.182 Sum_probs=108.6
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHH----------------HHHHHHHcCCHHHHHHHHHHHHh
Q 007401 488 ASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSN----------------RAAAYLELGCFQQAEEDCSKTIS 551 (605)
Q Consensus 488 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~----------------la~~~~~~~~~~~A~~~~~~al~ 551 (605)
.++.++..|..++..|+|++|+..|+++++.+|+++.+++. +|.+|..+|++++|+..|+++++
T Consensus 3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 82 (208)
T 3urz_A 3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQ 82 (208)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 36678899999999999999999999999999999999999 99999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 007401 552 LDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAANLAEKRLRK 602 (605)
Q Consensus 552 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 602 (605)
++|+++.+++++|.++...|++++|+.+|+++++++|++..++..++.++.
T Consensus 83 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~ 133 (208)
T 3urz_A 83 KAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYY 133 (208)
T ss_dssp HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999888764
No 28
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.58 E-value=1.6e-14 Score=124.08 Aligned_cols=104 Identities=14% Similarity=0.058 Sum_probs=94.6
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 007401 489 SELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTARE 568 (605)
Q Consensus 489 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 568 (605)
...++.+|..+++.|++++|+..|+++++.+|+++.+|+.+|.++..+|++++|+..|+++++++|+++.+++++|.++.
T Consensus 17 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~ 96 (121)
T 1hxi_A 17 HENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHT 96 (121)
T ss_dssp CSCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 34588999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HccCHHHHHHHHHHHHHhCCCCHH
Q 007401 569 ALFCYNEALQDFKHAMVLEPQNKA 592 (605)
Q Consensus 569 ~~g~~~~A~~~~~~al~~~p~~~~ 592 (605)
..|++++|+..|+++++++|++..
T Consensus 97 ~~g~~~~A~~~~~~al~~~P~~~~ 120 (121)
T 1hxi_A 97 NEHNANAALASLRAWLLSQPQYEQ 120 (121)
T ss_dssp HHHHHHHHHHHHHHHHC-------
T ss_pred HcCCHHHHHHHHHHHHHhCcCCCC
Confidence 999999999999999999998753
No 29
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.57 E-value=2.9e-14 Score=124.59 Aligned_cols=117 Identities=32% Similarity=0.485 Sum_probs=109.6
Q ss_pred hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 007401 486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGT 565 (605)
Q Consensus 486 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~ 565 (605)
+..+..++.+|..++..|+|++|+..|++++..+|++..+++++|.+++.++++++|+.+|+++++++|+++.+++++|.
T Consensus 6 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 85 (137)
T 3q49_B 6 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 85 (137)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHH
Confidence 34588999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHccCHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHH
Q 007401 566 AREALFCYNEALQDFKHAMVLEPQ-----NKAANLAEKRLRK 602 (605)
Q Consensus 566 ~~~~~g~~~~A~~~~~~al~~~p~-----~~~~~~~~~~~~~ 602 (605)
++..+|++++|+..|+++++++|+ +..+...+..+..
T Consensus 86 ~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~~ 127 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKK 127 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999998 6777766666554
No 30
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.57 E-value=8.7e-14 Score=117.30 Aligned_cols=115 Identities=35% Similarity=0.444 Sum_probs=110.8
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 007401 488 ASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAR 567 (605)
Q Consensus 488 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 567 (605)
.+..++.+|..++..|++++|+..|++++..+|++..++..+|.++...+++++|+..++++++++|+++.+++++|.++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 007401 568 EALFCYNEALQDFKHAMVLEPQNKAANLAEKRLRK 602 (605)
Q Consensus 568 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 602 (605)
...|++++|.+.|+++++++|++..++..++.+..
T Consensus 83 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 117 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNMEA 117 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhhc
Confidence 99999999999999999999999999998887754
No 31
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.57 E-value=4.6e-14 Score=144.18 Aligned_cols=120 Identities=30% Similarity=0.405 Sum_probs=114.9
Q ss_pred ChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 007401 485 SIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTS---------------ATYYSNRAAAYLELGCFQQAEEDCSKT 549 (605)
Q Consensus 485 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---------------~~~~~~la~~~~~~~~~~~A~~~~~~a 549 (605)
.+..+..++.+|..+++.|+|++|+.+|++++.+.|++ ..+|+++|.+|+++++|++|+.+|+++
T Consensus 143 ~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~a 222 (336)
T 1p5q_A 143 KLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKA 222 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 35678899999999999999999999999999999998 799999999999999999999999999
Q ss_pred HhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhh
Q 007401 550 ISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAANLAEKRLRKLI 604 (605)
Q Consensus 550 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~ 604 (605)
++++|+++.+|+++|.+|..+|++++|+.+|+++++++|++..++..++.++..+
T Consensus 223 l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~ 277 (336)
T 1p5q_A 223 LELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRI 277 (336)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHH
T ss_pred HHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999887654
No 32
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.56 E-value=3.8e-15 Score=133.34 Aligned_cols=111 Identities=14% Similarity=0.053 Sum_probs=103.5
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHH
Q 007401 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYN 574 (605)
Q Consensus 495 ~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 574 (605)
+|..+..+|++++|++.|++++..+|+++..++.+|.+|+++++|++|+++|+++++++|+++.+|+++|.+|..+|+++
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~ 82 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTD 82 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred hHHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchH
Confidence 57888889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHhhC
Q 007401 575 EALQDFKHAMVLEPQNKAANLAEKRLRKLIG 605 (605)
Q Consensus 575 ~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g 605 (605)
+|+.+|+++++++|++..++..++.++...|
T Consensus 83 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 113 (150)
T 4ga2_A 83 KAVECYRRSVELNPTQKDLVLKIAELLCKND 113 (150)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 9999999999999999999999999887654
No 33
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.56 E-value=7.9e-14 Score=123.13 Aligned_cols=119 Identities=34% Similarity=0.452 Sum_probs=113.2
Q ss_pred ChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHH
Q 007401 485 SIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTS---ATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYL 561 (605)
Q Consensus 485 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 561 (605)
.+..+..++.+|..++..|+|++|+..|+++++.+|++ ..+++++|.+|..++++++|++.++++++++|+++.+++
T Consensus 24 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 103 (148)
T 2dba_A 24 GASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALY 103 (148)
T ss_dssp TCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHH
T ss_pred chHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHH
Confidence 45678899999999999999999999999999999998 899999999999999999999999999999999999999
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 007401 562 RRGTAREALFCYNEALQDFKHAMVLEPQNKAANLAEKRLRKL 603 (605)
Q Consensus 562 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~ 603 (605)
++|.++..+|++++|+.+|+++++++|++..++..+..+...
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 145 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISGP 145 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHCS
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999988887654
No 34
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.55 E-value=9.4e-14 Score=130.16 Aligned_cols=119 Identities=26% Similarity=0.303 Sum_probs=113.2
Q ss_pred hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH----------------HHHHHHHHHHHHcCCHHHHHHHHHHH
Q 007401 486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSA----------------TYYSNRAAAYLELGCFQQAEEDCSKT 549 (605)
Q Consensus 486 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~----------------~~~~~la~~~~~~~~~~~A~~~~~~a 549 (605)
+..+..+..+|..++..|+|++|+..|++++.+.|+++ .++.++|.+|+.+++|++|+.+|+++
T Consensus 35 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 114 (198)
T 2fbn_A 35 VQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKV 114 (198)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 45678899999999999999999999999999999887 89999999999999999999999999
Q ss_pred HhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhh
Q 007401 550 ISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAANLAEKRLRKLI 604 (605)
Q Consensus 550 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~ 604 (605)
++++|++..+++++|.+|..+|++++|+++|+++++++|++..++..++.++..+
T Consensus 115 l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 169 (198)
T 2fbn_A 115 LKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKL 169 (198)
T ss_dssp HHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred HHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999998887654
No 35
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.54 E-value=5.4e-14 Score=145.83 Aligned_cols=133 Identities=11% Similarity=0.052 Sum_probs=121.8
Q ss_pred HHHHHhhhccCCCCCCCCCChHHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 007401 466 LQEQVNIASNLVPLPDTNGSIDASELLKEKGNAAFKGKQ-WNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEE 544 (605)
Q Consensus 466 ~~e~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~ 544 (605)
..+++....+.. ..+|.....|+.+|.++...|+ +++|+..|++++.++|++..+|+++|.++..+|++++|+.
T Consensus 113 ~~~Al~~~~~al-----~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~g~~~eAl~ 187 (382)
T 2h6f_A 113 SERAFKLTRDAI-----ELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELE 187 (382)
T ss_dssp CHHHHHHHHHHH-----HHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHH
T ss_pred hHHHHHHHHHHH-----HhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHH
Confidence 445555554443 3467788999999999999997 9999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 007401 545 DCSKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAANLAEKRLRKL 603 (605)
Q Consensus 545 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~ 603 (605)
+|+++++++|++..+|+++|.++..+|++++|+++|+++++++|++..++..++.++..
T Consensus 188 ~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~ 246 (382)
T 2h6f_A 188 FIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISN 246 (382)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999998876
No 36
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.54 E-value=3.8e-14 Score=146.96 Aligned_cols=122 Identities=11% Similarity=0.057 Sum_probs=104.6
Q ss_pred CChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 007401 484 GSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRR 563 (605)
Q Consensus 484 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 563 (605)
.+|+....|+.+|.++...|+|++|+..|+++++++|++..+|+++|.++..+|++++|+++|+++++++|++..+|+++
T Consensus 161 l~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~l 240 (382)
T 2h6f_A 161 EQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQR 240 (382)
T ss_dssp HCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 35667888899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHH-ccCHHHH-----HHHHHHHHHhCCCCHHHHHHHHHHHHhhC
Q 007401 564 GTAREA-LFCYNEA-----LQDFKHAMVLEPQNKAANLAEKRLRKLIG 605 (605)
Q Consensus 564 a~~~~~-~g~~~~A-----~~~~~~al~~~p~~~~~~~~~~~~~~~~g 605 (605)
|.++.. .|.+++| +++|+++++++|++..++..++.++...|
T Consensus 241 g~~l~~l~~~~~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g 288 (382)
T 2h6f_A 241 YFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRG 288 (382)
T ss_dssp HHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTC
T ss_pred HHHHHHhcCcchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccC
Confidence 999888 4554777 58899999999999999988888876543
No 37
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.53 E-value=5e-13 Score=113.69 Aligned_cols=118 Identities=28% Similarity=0.444 Sum_probs=113.6
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 007401 488 ASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAR 567 (605)
Q Consensus 488 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 567 (605)
....|+.+|..+...|++++|++.|+++++..|++..++..+|.++...+++++|+..++++++.+|+++..++.+|.++
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 87 (125)
T 1na0_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHH
Confidence 47889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhhC
Q 007401 568 EALFCYNEALQDFKHAMVLEPQNKAANLAEKRLRKLIG 605 (605)
Q Consensus 568 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g 605 (605)
...|++++|+..|+++++++|++..++..++.++...|
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999887765
No 38
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.52 E-value=8.3e-14 Score=148.46 Aligned_cols=120 Identities=32% Similarity=0.473 Sum_probs=110.4
Q ss_pred ChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 007401 485 SIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTS---------------ATYYSNRAAAYLELGCFQQAEEDCSKT 549 (605)
Q Consensus 485 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---------------~~~~~~la~~~~~~~~~~~A~~~~~~a 549 (605)
.+..+..|+++|+.+++.|+|++|+..|+++++++|++ ..+|+++|.||+++++|++|+.+|+++
T Consensus 264 ~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~a 343 (457)
T 1kt0_A 264 KLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKA 343 (457)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 35678899999999999999999999999999999998 799999999999999999999999999
Q ss_pred HhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhh
Q 007401 550 ISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAANLAEKRLRKLI 604 (605)
Q Consensus 550 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~ 604 (605)
++++|+++.+|+++|.+|..+|++++|+.+|+++++++|++..++..++.++..+
T Consensus 344 l~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~ 398 (457)
T 1kt0_A 344 LGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKA 398 (457)
T ss_dssp HHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHH
T ss_pred HhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999988887654
No 39
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.52 E-value=3.2e-13 Score=124.51 Aligned_cols=135 Identities=16% Similarity=0.169 Sum_probs=120.0
Q ss_pred HHHHHhhhccCCCCCCCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 007401 466 LQEQVNIASNLVPLPDTNGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEED 545 (605)
Q Consensus 466 ~~e~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~ 545 (605)
+.+++....+.. ..+|+....|..+|.++.+.|++++|+..+++++...|++..++..+|.++...+++++|.+.
T Consensus 21 ~~~A~~~~~~al-----~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 95 (184)
T 3vtx_A 21 FDGAIRAYKKVL-----KADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSANFMIDEKQAAIDA 95 (184)
T ss_dssp HHHHHHHHHHHH-----HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHH-----HhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHcCCHHHHHHH
Confidence 556666665543 235667888999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhhC
Q 007401 546 CSKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAANLAEKRLRKLIG 605 (605)
Q Consensus 546 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g 605 (605)
+.++++++|++..+++.+|.++..+|++++|++.|+++++++|++..++..++.++..+|
T Consensus 96 ~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g 155 (184)
T 3vtx_A 96 LQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKG 155 (184)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCC
Confidence 999999999999999999999999999999999999999999999999999999988765
No 40
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.51 E-value=4.7e-13 Score=115.42 Aligned_cols=113 Identities=19% Similarity=0.184 Sum_probs=105.8
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---HHHHHHH
Q 007401 490 ELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSA---TYYSNRAAAYLELGCFQQAEEDCSKTISLDKKN---VKAYLRR 563 (605)
Q Consensus 490 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~l 563 (605)
+.++.+|..++..|+|++|+..|+++++.+|++. .+++.+|.+++..|++++|+..|+++++.+|++ +.+++.+
T Consensus 3 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l 82 (129)
T 2xev_A 3 RTAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKL 82 (129)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHH
Confidence 3478899999999999999999999999999988 899999999999999999999999999999999 8999999
Q ss_pred HHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 007401 564 GTAREALFCYNEALQDFKHAMVLEPQNKAANLAEKRLRK 602 (605)
Q Consensus 564 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 602 (605)
|.++..+|++++|+..|+++++..|++..+......+..
T Consensus 83 a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~ 121 (129)
T 2xev_A 83 GLSQYGEGKNTEAQQTLQQVATQYPGSDAARVAQERLQS 121 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHH
Confidence 999999999999999999999999999988777766544
No 41
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.51 E-value=4.5e-13 Score=123.52 Aligned_cols=107 Identities=28% Similarity=0.282 Sum_probs=97.8
Q ss_pred hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 007401 486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGT 565 (605)
Q Consensus 486 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~ 565 (605)
+.....+..+|..+...+++++|+..+++++..+|++..++..+|.+|..+|++++|++.|+++++++|+++.+|+++|.
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~ 149 (184)
T 3vtx_A 70 TTSAEAYYILGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGL 149 (184)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHH
Confidence 44577888899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHccCHHHHHHHHHHHHHhCCCCHH
Q 007401 566 AREALFCYNEALQDFKHAMVLEPQNKA 592 (605)
Q Consensus 566 ~~~~~g~~~~A~~~~~~al~~~p~~~~ 592 (605)
+|..+|++++|+++|+++++++|+++.
T Consensus 150 ~~~~~g~~~~A~~~~~~al~~~p~~a~ 176 (184)
T 3vtx_A 150 AYEGKGLRDEAVKYFKKALEKEEKKAK 176 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTTHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHhCCccCHH
Confidence 999999999999999999999987643
No 42
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.51 E-value=7.5e-13 Score=119.22 Aligned_cols=115 Identities=37% Similarity=0.642 Sum_probs=109.2
Q ss_pred hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 007401 486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGT 565 (605)
Q Consensus 486 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~ 565 (605)
...+..++.+|..++..|+|++|+..|+++++.+|++..++.++|.++..++++++|++.++++++++|+++.+++++|.
T Consensus 10 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~ 89 (166)
T 1a17_A 10 LKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAA 89 (166)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 45688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 007401 566 AREALFCYNEALQDFKHAMVLEPQNKAANLAEKRL 600 (605)
Q Consensus 566 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 600 (605)
++..+|++++|+.+|+++++++|++..++..+..+
T Consensus 90 ~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~ 124 (166)
T 1a17_A 90 SNMALGKFRAALRDYETVVKVKPHDKDAKMKYQEC 124 (166)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 99999999999999999999999999887655554
No 43
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.50 E-value=4.2e-13 Score=128.49 Aligned_cols=116 Identities=20% Similarity=0.235 Sum_probs=108.4
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 007401 489 SELLKEKGNAAFKGKQWNKAVNYYSEAIKLNG-TSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAR 567 (605)
Q Consensus 489 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 567 (605)
++.++.+|..++..|+|++|+..|+++++++| .+..+++++|.++..++++++|+++|+++++++|++..+++.+|.++
T Consensus 7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 86 (228)
T 4i17_A 7 PNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAAY 86 (228)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHHH
Confidence 58899999999999999999999999999999 89999999999999999999999999999999999999999999999
Q ss_pred HHccCHHHHHHHHHHHHHhCCCCH-------HHHHHHHHHHHhh
Q 007401 568 EALFCYNEALQDFKHAMVLEPQNK-------AANLAEKRLRKLI 604 (605)
Q Consensus 568 ~~~g~~~~A~~~~~~al~~~p~~~-------~~~~~~~~~~~~~ 604 (605)
..+|++++|++.|+++++++|++. .++..++.++...
T Consensus 87 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~ 130 (228)
T 4i17_A 87 RDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQA 130 (228)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHh
Confidence 999999999999999999999999 4466666665443
No 44
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.50 E-value=4.8e-13 Score=114.96 Aligned_cols=117 Identities=28% Similarity=0.434 Sum_probs=109.1
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-------HHH
Q 007401 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKN-------VKA 559 (605)
Q Consensus 487 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~-------~~~ 559 (605)
+.+..++.+|..++..|++++|+.+|++++..+|++..+++++|.++...+++++|+.+++++++++|++ ..+
T Consensus 2 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 81 (131)
T 1elr_A 2 KQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKA 81 (131)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHH
Confidence 4578899999999999999999999999999999999999999999999999999999999999998877 899
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhh
Q 007401 560 YLRRGTAREALFCYNEALQDFKHAMVLEPQNKAANLAEKRLRKLI 604 (605)
Q Consensus 560 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~ 604 (605)
++++|.++...|++++|+++|++++++.| +......+..+...+
T Consensus 82 ~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~ 125 (131)
T 1elr_A 82 YARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKIL 125 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHH
Confidence 99999999999999999999999999998 688888777776543
No 45
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.49 E-value=2.5e-13 Score=140.37 Aligned_cols=119 Identities=29% Similarity=0.479 Sum_probs=112.3
Q ss_pred hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH----------------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 007401 486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIK----------------LNGTSATYYSNRAAAYLELGCFQQAEEDCSKT 549 (605)
Q Consensus 486 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~----------------~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a 549 (605)
.+.+..|+.+|+.+++.|+|++|+..|+++++ .+|.+..+|+++|.+|+++++|++|+++|+++
T Consensus 220 ~~~a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~a 299 (370)
T 1ihg_A 220 LLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEA 299 (370)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 34577899999999999999999999999998 77888999999999999999999999999999
Q ss_pred HhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhh
Q 007401 550 ISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAANLAEKRLRKLI 604 (605)
Q Consensus 550 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~ 604 (605)
++++|+++.+|+++|.+|..+|++++|+++|+++++++|++..++..+..++..+
T Consensus 300 l~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~ 354 (370)
T 1ihg_A 300 LEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKI 354 (370)
T ss_dssp HTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999988887654
No 46
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=99.48 E-value=1.2e-13 Score=122.14 Aligned_cols=102 Identities=20% Similarity=0.143 Sum_probs=93.7
Q ss_pred HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 007401 500 FKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCF----------QQAEEDCSKTISLDKKNVKAYLRRGTAREA 569 (605)
Q Consensus 500 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~----------~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 569 (605)
.+.++|++|++.|+++++++|+++++|+++|.++..++++ ++|+..|++|++++|++..+|+++|.+|..
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~ 92 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTS 92 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH
Confidence 4556899999999999999999999999999999999875 599999999999999999999999999998
Q ss_pred cc-----------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 007401 570 LF-----------CYNEALQDFKHAMVLEPQNKAANLAEKRLR 601 (605)
Q Consensus 570 ~g-----------~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 601 (605)
+| ++++|+++|+++++++|++..+...+..+.
T Consensus 93 lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~al~~~~ 135 (158)
T 1zu2_A 93 FAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTA 135 (158)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 85 899999999999999999988877766543
No 47
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.45 E-value=6e-13 Score=127.37 Aligned_cols=116 Identities=23% Similarity=0.186 Sum_probs=109.9
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH-------HHHH
Q 007401 489 SELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNV-------KAYL 561 (605)
Q Consensus 489 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~-------~~~~ 561 (605)
...++.+|.+++..|+|++|+..|+++++.+|++..++..+|.+|..+|++++|++.|+++++++|+++ .+|+
T Consensus 42 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 121 (228)
T 4i17_A 42 SVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYL 121 (228)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHH
Confidence 467788999999999999999999999999999999999999999999999999999999999999999 6799
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHhh
Q 007401 562 RRGTAREALFCYNEALQDFKHAMVLEPQ--NKAANLAEKRLRKLI 604 (605)
Q Consensus 562 ~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~~~~~~~~~ 604 (605)
++|.++..+|++++|++.|+++++++|+ +..++..++.++...
T Consensus 122 ~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~ 166 (228)
T 4i17_A 122 KEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLFYNN 166 (228)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999 889999988887653
No 48
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.44 E-value=3.4e-13 Score=112.52 Aligned_cols=104 Identities=14% Similarity=0.197 Sum_probs=99.8
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--CHHHHHHHH
Q 007401 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKK--NVKAYLRRG 564 (605)
Q Consensus 487 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~la 564 (605)
.....++.+|..++..|++++|+..|+++++.+|++..+++++|.++..++++++|++.++++++++|+ +..+++.+|
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~ 83 (112)
T 2kck_A 4 QNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKA 83 (112)
T ss_dssp SSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHH
Confidence 445678899999999999999999999999999999999999999999999999999999999999999 999999999
Q ss_pred HHHHHc-cCHHHHHHHHHHHHHhCCCC
Q 007401 565 TAREAL-FCYNEALQDFKHAMVLEPQN 590 (605)
Q Consensus 565 ~~~~~~-g~~~~A~~~~~~al~~~p~~ 590 (605)
.++..+ |++++|+++++++++..|.+
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~~p~~ 110 (112)
T 2kck_A 84 DALRYIEGKEVEAEIAEARAKLEHHHH 110 (112)
T ss_dssp HHHTTCSSCSHHHHHHHHHHGGGCCCC
T ss_pred HHHHHHhCCHHHHHHHHHHHhhcccCC
Confidence 999999 99999999999999999875
No 49
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.44 E-value=2.3e-12 Score=121.88 Aligned_cols=115 Identities=18% Similarity=0.188 Sum_probs=100.2
Q ss_pred ChHHHHHHHH----------------HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 007401 485 SIDASELLKE----------------KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSK 548 (605)
Q Consensus 485 ~~~~a~~~~~----------------~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~ 548 (605)
.|+....|+. +|.++.+.|+|++|+..|+++++++|++..+++++|.++..+|++++|+++|++
T Consensus 34 ~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 113 (208)
T 3urz_A 34 NIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEK 113 (208)
T ss_dssp CHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred CCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4566666776 999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCCHHHHHHHHHHHHH-----------------------------------ccCHHHHHHHHHHHHHhCCCCHHH
Q 007401 549 TISLDKKNVKAYLRRGTAREA-----------------------------------LFCYNEALQDFKHAMVLEPQNKAA 593 (605)
Q Consensus 549 al~~~p~~~~~~~~la~~~~~-----------------------------------~g~~~~A~~~~~~al~~~p~~~~~ 593 (605)
+++++|+++.+|+++|.+|+. +|+|++|+.+|+++++++|++ ..
T Consensus 114 al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~-~~ 192 (208)
T 3urz_A 114 ILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPST-EA 192 (208)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCH-HH
T ss_pred HHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCH-HH
Confidence 999999999988888877643 346889999999999999974 34
Q ss_pred HHHHHHH
Q 007401 594 NLAEKRL 600 (605)
Q Consensus 594 ~~~~~~~ 600 (605)
...+..+
T Consensus 193 ~~~l~~i 199 (208)
T 3urz_A 193 QKTLDKI 199 (208)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444443
No 50
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.43 E-value=1.1e-11 Score=113.18 Aligned_cols=120 Identities=17% Similarity=0.154 Sum_probs=114.1
Q ss_pred hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 007401 486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGT 565 (605)
Q Consensus 486 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~ 565 (605)
+.....+..+|..+...|++++|+..|+++++..|++..++..+|.++...+++++|++.++++++.+|+++.+++.+|.
T Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~ 118 (186)
T 3as5_A 39 AFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGV 118 (186)
T ss_dssp SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHH
Confidence 34578899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhhC
Q 007401 566 AREALFCYNEALQDFKHAMVLEPQNKAANLAEKRLRKLIG 605 (605)
Q Consensus 566 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g 605 (605)
++...|++++|+..++++++.+|++..++..++.++...|
T Consensus 119 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~ 158 (186)
T 3as5_A 119 ALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMG 158 (186)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcC
Confidence 9999999999999999999999999999999998887654
No 51
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=99.43 E-value=2.5e-13 Score=115.67 Aligned_cols=101 Identities=14% Similarity=0.118 Sum_probs=90.9
Q ss_pred HCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHH
Q 007401 501 KGKQWNKAVNYYSEAIKL---NGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEAL 577 (605)
Q Consensus 501 ~~g~~~~A~~~~~~al~~---~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 577 (605)
..|++++|+..|++++++ +|++..+++++|.+|+.+|+|++|++.|+++++++|+++.+++++|.++..+|++++|+
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 468999999999999999 68999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHH
Q 007401 578 QDFKHAMVLEPQNKAANLAEKRLR 601 (605)
Q Consensus 578 ~~~~~al~~~p~~~~~~~~~~~~~ 601 (605)
..|+++++.+|+++........+.
T Consensus 82 ~~~~~al~~~p~~~~~~~~~~ai~ 105 (117)
T 3k9i_A 82 ELLLKIIAETSDDETIQSYKQAIL 105 (117)
T ss_dssp HHHHHHHHHHCCCHHHHHTHHHHH
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHH
Confidence 999999999999988876665554
No 52
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.43 E-value=9.7e-14 Score=124.06 Aligned_cols=98 Identities=10% Similarity=0.002 Sum_probs=93.0
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Q 007401 508 AVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLE 587 (605)
Q Consensus 508 A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 587 (605)
+-..|++++.++|++..+++++|.++++.|+|++|++.|+++++++|+++.+|+++|.++..+|+|++|+.+|+++++++
T Consensus 21 ~~~~l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~ 100 (151)
T 3gyz_A 21 SGATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG 100 (151)
T ss_dssp TSCCTGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred CCCCHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC
Confidence 33557888889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhhC
Q 007401 588 PQNKAANLAEKRLRKLIG 605 (605)
Q Consensus 588 p~~~~~~~~~~~~~~~~g 605 (605)
|+++.++..++.++..+|
T Consensus 101 P~~~~~~~~lg~~~~~lg 118 (151)
T 3gyz_A 101 KNDYTPVFHTGQCQLRLK 118 (151)
T ss_dssp SSCCHHHHHHHHHHHHTT
T ss_pred CCCcHHHHHHHHHHHHcC
Confidence 999999999999998775
No 53
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.42 E-value=1.9e-12 Score=118.65 Aligned_cols=114 Identities=18% Similarity=0.233 Sum_probs=105.4
Q ss_pred hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH-HHHcCCH--HHHHHHHHHHHhcCCCCHHHHHH
Q 007401 486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAA-YLELGCF--QQAEEDCSKTISLDKKNVKAYLR 562 (605)
Q Consensus 486 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~-~~~~~~~--~~A~~~~~~al~~~p~~~~~~~~ 562 (605)
|.....|+.+|.+++..|+|++|+.+|+++++++|+++.++..+|.+ +...+++ ++|+..|+++++++|+++.+++.
T Consensus 41 p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 120 (177)
T 2e2e_A 41 PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALML 120 (177)
T ss_dssp CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCCcHHHHHH
Confidence 34578999999999999999999999999999999999999999999 8899999 99999999999999999999999
Q ss_pred HHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 007401 563 RGTAREALFCYNEALQDFKHAMVLEPQNKAANLAEKR 599 (605)
Q Consensus 563 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~ 599 (605)
+|.++...|++++|+..|+++++++|++.........
T Consensus 121 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~ 157 (177)
T 2e2e_A 121 LASDAFMQANYAQAIELWQKVMDLNSPRINRTQLVES 157 (177)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHHHHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHhhCCCCccHHHHHHH
Confidence 9999999999999999999999999988655444433
No 54
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.41 E-value=1.6e-12 Score=129.20 Aligned_cols=103 Identities=34% Similarity=0.556 Sum_probs=100.3
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 007401 488 ASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAR 567 (605)
Q Consensus 488 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 567 (605)
.+..++.+|..+++.|+|++|+..|+++++.+|+++.+++++|.+|..+|++++|+++|+++++++|+++.+++++|.+|
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 82 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ 82 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHccCHHHHHHHHHHHHHhCCCC
Q 007401 568 EALFCYNEALQDFKHAMVLEPQN 590 (605)
Q Consensus 568 ~~~g~~~~A~~~~~~al~~~p~~ 590 (605)
..+|++++|+..|+++++++|++
T Consensus 83 ~~~g~~~~A~~~~~~al~l~p~~ 105 (281)
T 2c2l_A 83 LEMESYDEAIANLQRAYSLAKEQ 105 (281)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHcCCHHHHHHHHHHHHHhCccc
Confidence 99999999999999999999876
No 55
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.40 E-value=7.3e-12 Score=107.71 Aligned_cols=112 Identities=27% Similarity=0.403 Sum_probs=65.5
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Q 007401 491 LLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREAL 570 (605)
Q Consensus 491 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 570 (605)
.|+.+|..+...|++++|+..|+++++..|++...+..+|.++...+++++|++.++++++.+|++...++.+|.++...
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 82 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQ 82 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHh
Confidence 34555555555566666666666665555555555555566555556666666666666555555555555566666566
Q ss_pred cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 007401 571 FCYNEALQDFKHAMVLEPQNKAANLAEKRLRK 602 (605)
Q Consensus 571 g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 602 (605)
|++++|++.++++++..|++...+..++.++.
T Consensus 83 ~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 114 (136)
T 2fo7_A 83 GDYDEAIEYYQKALELDPRSAEAWYNLGNAYY 114 (136)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 66666666666665555555555555555443
No 56
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.40 E-value=3.3e-13 Score=137.91 Aligned_cols=117 Identities=30% Similarity=0.412 Sum_probs=96.3
Q ss_pred hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH-----------------HHHHHHHHHHHHcCCHHHHHHHHHH
Q 007401 486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSA-----------------TYYSNRAAAYLELGCFQQAEEDCSK 548 (605)
Q Consensus 486 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~-----------------~~~~~la~~~~~~~~~~~A~~~~~~ 548 (605)
+..+..++.+|+.+++.|+|++|+.+|++++.+.|++. .+|+++|.+|+++++|++|+.+|++
T Consensus 176 ~~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~ 255 (338)
T 2if4_A 176 IGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNI 255 (338)
T ss_dssp HHHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 56688899999999999999999999999999999887 4899999999999999999999999
Q ss_pred HHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 007401 549 TISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAANLAEKRLRK 602 (605)
Q Consensus 549 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 602 (605)
+++++|++..+|+++|.+|..+|++++|+.+|+++++++|++..++..+..+..
T Consensus 256 al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~ 309 (338)
T 2if4_A 256 VLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAE 309 (338)
T ss_dssp HHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-----------------
T ss_pred HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999998888877643
No 57
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.38 E-value=5.2e-12 Score=138.48 Aligned_cols=120 Identities=10% Similarity=-0.056 Sum_probs=107.2
Q ss_pred ChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 007401 485 SIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRG 564 (605)
Q Consensus 485 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la 564 (605)
.+.....|+.+|..+++.|+|++|++.|+++++++|++..+++++|.+|..+|++++|++.|+++++++|+++.+++++|
T Consensus 19 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 98 (568)
T 2vsy_A 19 RPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLG 98 (568)
T ss_dssp --CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 45567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhh
Q 007401 565 TAREALFCYNEALQDFKHAMVLEPQNKAANLAEKRLRKLI 604 (605)
Q Consensus 565 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~ 604 (605)
.+|..+|++++|++.|+++++++|++..++..++.++..+
T Consensus 99 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 138 (568)
T 2vsy_A 99 HALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRL 138 (568)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Confidence 9999999999999999999999999998888888887665
No 58
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.37 E-value=8.9e-13 Score=141.16 Aligned_cols=115 Identities=37% Similarity=0.642 Sum_probs=109.6
Q ss_pred hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 007401 486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGT 565 (605)
Q Consensus 486 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~ 565 (605)
++.+..++.+|..++++|+|++|+++|+++++++|+++.+++++|.+|.++++|++|+++|+++++++|+++.+++++|.
T Consensus 3 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~ 82 (477)
T 1wao_1 3 LKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAA 82 (477)
T ss_dssp HHHHTTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 45667788889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 007401 566 AREALFCYNEALQDFKHAMVLEPQNKAANLAEKRL 600 (605)
Q Consensus 566 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 600 (605)
+|..+|++++|++.|+++++++|++..++..++.+
T Consensus 83 ~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~ 117 (477)
T 1wao_1 83 SNMALGKFRAALRDYETVVKVKPHDKDAKMKYQEC 117 (477)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 99999999999999999999999999888888776
No 59
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.36 E-value=1.8e-12 Score=145.17 Aligned_cols=120 Identities=16% Similarity=0.042 Sum_probs=107.4
Q ss_pred ChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 007401 485 SIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRG 564 (605)
Q Consensus 485 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la 564 (605)
.++....++.+|..+++.|+|++|++.|+++++.+|+++.+|+++|.+|+.+|++++|+++|+++++++|+++.+|+++|
T Consensus 429 ~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg 508 (681)
T 2pzi_A 429 FSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALA 508 (681)
T ss_dssp CTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHH
T ss_pred cccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHH
Confidence 45667788899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhhC
Q 007401 565 TAREALFCYNEALQDFKHAMVLEPQNKAANLAEKRLRKLIG 605 (605)
Q Consensus 565 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g 605 (605)
.++.++|++++ +++|+++++++|++..++..++.++..+|
T Consensus 509 ~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g 548 (681)
T 2pzi_A 509 ATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEG 548 (681)
T ss_dssp HHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcC
Confidence 99999999999 99999999999999999988888887654
No 60
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.35 E-value=3.4e-12 Score=110.28 Aligned_cols=92 Identities=16% Similarity=0.221 Sum_probs=86.2
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHH
Q 007401 514 EAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAA 593 (605)
Q Consensus 514 ~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 593 (605)
++..++|+.+..+.++|..|++.|+|++|++.|+++++++|+++.+|+++|.++..+|++++|+++|+++++++|++..+
T Consensus 4 r~a~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a 83 (126)
T 4gco_A 4 RLAYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKG 83 (126)
T ss_dssp ---CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHH
Confidence 45568999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhC
Q 007401 594 NLAEKRLRKLIG 605 (605)
Q Consensus 594 ~~~~~~~~~~~g 605 (605)
+..++.++..+|
T Consensus 84 ~~~lg~~~~~~~ 95 (126)
T 4gco_A 84 YIRKAACLVAMR 95 (126)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHCC
Confidence 999999988765
No 61
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.35 E-value=4.3e-12 Score=135.90 Aligned_cols=116 Identities=22% Similarity=0.222 Sum_probs=111.7
Q ss_pred HHHHHHHHHHHHHC---------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc--------CCHHHHHHHHHHHHh
Q 007401 489 SELLKEKGNAAFKG---------KQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLEL--------GCFQQAEEDCSKTIS 551 (605)
Q Consensus 489 a~~~~~~g~~~~~~---------g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~--------~~~~~A~~~~~~al~ 551 (605)
...+..+|.++... |++++|++.|+++++++|++..+|+++|.+|..+ +++++|+++|+++++
T Consensus 170 ~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~ 249 (474)
T 4abn_A 170 KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEK 249 (474)
T ss_dssp HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHH
Confidence 58999999999999 9999999999999999999999999999999999 999999999999999
Q ss_pred cCC---CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhh
Q 007401 552 LDK---KNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAANLAEKRLRKLI 604 (605)
Q Consensus 552 ~~p---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~ 604 (605)
++| +++.+|+++|.+|..+|++++|+++|+++++++|++..++..++.++..+
T Consensus 250 ~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~l 305 (474)
T 4abn_A 250 VDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFL 305 (474)
T ss_dssp HCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred hCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 999 99999999999999999999999999999999999999999988887654
No 62
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.35 E-value=1.1e-11 Score=119.83 Aligned_cols=116 Identities=32% Similarity=0.438 Sum_probs=111.3
Q ss_pred ChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 007401 485 SIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRG 564 (605)
Q Consensus 485 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la 564 (605)
.+.....+..+|..++..|++++|+..|+++++.+|++..++..+|.++...|++++|++.++++++++|+++.+++.+|
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~ 214 (258)
T 3uq3_A 135 NPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKA 214 (258)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHccCHHHHHHHHHHHHHhC------CCCHHHHHHHHHH
Q 007401 565 TAREALFCYNEALQDFKHAMVLE------PQNKAANLAEKRL 600 (605)
Q Consensus 565 ~~~~~~g~~~~A~~~~~~al~~~------p~~~~~~~~~~~~ 600 (605)
.++..+|++++|++.|+++++++ |++..++..+..+
T Consensus 215 ~~~~~~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~~~ 256 (258)
T 3uq3_A 215 TAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKA 256 (258)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHT
T ss_pred HHHHHHhhHHHHHHHHHHHHHhChhhcCCCchHHHHHHHHHh
Confidence 99999999999999999999999 9998888877664
No 63
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.35 E-value=1.3e-11 Score=116.47 Aligned_cols=116 Identities=22% Similarity=0.232 Sum_probs=107.0
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 007401 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTA 566 (605)
Q Consensus 487 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~ 566 (605)
..+..++.+|..++..|+|++|+..|++++ ++ ++.+++++|.+|..+|++++|++.|+++++++|+++.+++++|.+
T Consensus 4 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~--~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~ 80 (213)
T 1hh8_A 4 VEAISLWNEGVLAADKKDWKGALDAFSAVQ--DP-HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGML 80 (213)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHTSS--SC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHc--CC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHH
Confidence 456678999999999999999999999995 33 789999999999999999999999999999999999999999999
Q ss_pred HHHccCHHHHHHHHHHHHHhCCCCH----------------HHHHHHHHHHHhhC
Q 007401 567 REALFCYNEALQDFKHAMVLEPQNK----------------AANLAEKRLRKLIG 605 (605)
Q Consensus 567 ~~~~g~~~~A~~~~~~al~~~p~~~----------------~~~~~~~~~~~~~g 605 (605)
+..+|++++|++.|++++++.|++. .++..++.++..+|
T Consensus 81 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 135 (213)
T 1hh8_A 81 YYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKE 135 (213)
T ss_dssp HHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTT
T ss_pred HHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHcc
Confidence 9999999999999999999988877 88888888877654
No 64
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.35 E-value=2.3e-11 Score=119.10 Aligned_cols=114 Identities=20% Similarity=0.093 Sum_probs=107.7
Q ss_pred ChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 007401 485 SIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRG 564 (605)
Q Consensus 485 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la 564 (605)
.+..+..++.+|..++..|++++|+..|+++++.+|++..++..+|.++...|++++|+++|+++++++|++..+++.+|
T Consensus 39 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la 118 (275)
T 1xnf_A 39 DDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRG 118 (275)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCccccHHHHHHH
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 007401 565 TAREALFCYNEALQDFKHAMVLEPQNKAANLAEK 598 (605)
Q Consensus 565 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 598 (605)
.++...|++++|+..|+++++++|++........
T Consensus 119 ~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 152 (275)
T 1xnf_A 119 IALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLY 152 (275)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHH
Confidence 9999999999999999999999999985554433
No 65
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.35 E-value=7.6e-12 Score=122.44 Aligned_cols=110 Identities=14% Similarity=0.168 Sum_probs=102.9
Q ss_pred ChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---HH
Q 007401 485 SIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTS---ATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKN---VK 558 (605)
Q Consensus 485 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~ 558 (605)
.+..++.++.+|..+++.|+|++|+..|+++++.+|++ ..+++.+|.+|+.+|+|++|+..|+++++++|++ +.
T Consensus 11 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 90 (261)
T 3qky_A 11 RHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQ 90 (261)
T ss_dssp CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHH
T ss_pred CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHH
Confidence 34568899999999999999999999999999999999 9999999999999999999999999999998854 67
Q ss_pred HHHHHHHHHHH--------ccCHHHHHHHHHHHHHhCCCCHHHH
Q 007401 559 AYLRRGTAREA--------LFCYNEALQDFKHAMVLEPQNKAAN 594 (605)
Q Consensus 559 ~~~~la~~~~~--------~g~~~~A~~~~~~al~~~p~~~~~~ 594 (605)
+++.+|.++.. +|++++|+..|+++++.+|++..+.
T Consensus 91 a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~ 134 (261)
T 3qky_A 91 AEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVD 134 (261)
T ss_dssp HHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHH
T ss_pred HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHH
Confidence 99999999999 9999999999999999999987665
No 66
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.35 E-value=2.8e-11 Score=116.16 Aligned_cols=120 Identities=13% Similarity=0.133 Sum_probs=96.8
Q ss_pred hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 007401 486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGT 565 (605)
Q Consensus 486 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~ 565 (605)
+.....+..+|..+...|++++|++.|+++++..|++..++..+|.++...|++++|++.++++++.+|+++.+++.+|.
T Consensus 88 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 167 (243)
T 2q7f_A 88 SSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGM 167 (243)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHH
Confidence 34567777888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhhC
Q 007401 566 AREALFCYNEALQDFKHAMVLEPQNKAANLAEKRLRKLIG 605 (605)
Q Consensus 566 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g 605 (605)
++...|++++|+..|+++++.+|++..++..++.++...|
T Consensus 168 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~ 207 (243)
T 2q7f_A 168 CLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKE 207 (243)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcc
Confidence 8888888888888888888888888888877777776553
No 67
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.34 E-value=3.2e-11 Score=113.69 Aligned_cols=105 Identities=13% Similarity=0.097 Sum_probs=100.0
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH----------
Q 007401 488 ASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNV---------- 557 (605)
Q Consensus 488 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~---------- 557 (605)
....++.+|.+++..|+|++|+..|++++..+|++..+++++|.+|..++++++|+++|++++++.|++.
T Consensus 36 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 115 (213)
T 1hh8_A 36 HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQ 115 (213)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBC
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccc
Confidence 3679999999999999999999999999999999999999999999999999999999999999888776
Q ss_pred ------HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHH
Q 007401 558 ------KAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKA 592 (605)
Q Consensus 558 ------~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 592 (605)
.+++++|.++..+|++++|+++|+++++++|++..
T Consensus 116 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 156 (213)
T 1hh8_A 116 FKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRH 156 (213)
T ss_dssp CEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGGG
T ss_pred cCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccccc
Confidence 99999999999999999999999999999997643
No 68
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.34 E-value=8.3e-12 Score=122.15 Aligned_cols=153 Identities=12% Similarity=0.080 Sum_probs=122.6
Q ss_pred CCchhHHhHHHHHHhH--HHHHHhhhccCCCCCCCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC---HH
Q 007401 450 GGDKFLLDTVLDLYDS--LQEQVNIASNLVPLPDTNGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTS---AT 524 (605)
Q Consensus 450 ~~d~~ll~~a~~l~~~--~~e~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---~~ 524 (605)
.....++..+..+... ..+++....... ...+..+.....++.+|.++++.|+|++|+..|+++++..|++ ..
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l--~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 90 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVF--TYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQ 90 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHG--GGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHH--HhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHH
Confidence 3445555555555443 445555544432 2223334458899999999999999999999999999998854 77
Q ss_pred HHHHHHHHHHH--------cCCHHHHHHHHHHHHhcCCCCHHHH-----------------HHHHHHHHHccCHHHHHHH
Q 007401 525 YYSNRAAAYLE--------LGCFQQAEEDCSKTISLDKKNVKAY-----------------LRRGTAREALFCYNEALQD 579 (605)
Q Consensus 525 ~~~~la~~~~~--------~~~~~~A~~~~~~al~~~p~~~~~~-----------------~~la~~~~~~g~~~~A~~~ 579 (605)
+++.+|.+++. ++++++|+..|+++++.+|++..++ +.+|.+|...|++++|+..
T Consensus 91 a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 170 (261)
T 3qky_A 91 AEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVT 170 (261)
T ss_dssp HHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHH
Confidence 89999999999 9999999999999999999987665 8899999999999999999
Q ss_pred HHHHHHhCCCC---HHHHHHHHHHHHhh
Q 007401 580 FKHAMVLEPQN---KAANLAEKRLRKLI 604 (605)
Q Consensus 580 ~~~al~~~p~~---~~~~~~~~~~~~~~ 604 (605)
|+++++.+|++ ..++..++.++..+
T Consensus 171 ~~~~l~~~p~~~~~~~a~~~l~~~~~~~ 198 (261)
T 3qky_A 171 YEAVFDAYPDTPWADDALVGAMRAYIAY 198 (261)
T ss_dssp HHHHHHHCTTSTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCchHHHHHHHHHHHHHHh
Confidence 99999999984 56788887776543
No 69
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.34 E-value=1.7e-11 Score=111.96 Aligned_cols=120 Identities=15% Similarity=0.127 Sum_probs=114.0
Q ss_pred hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 007401 486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGT 565 (605)
Q Consensus 486 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~ 565 (605)
......+..+|..++..|++++|+..|+++++..|++..++..+|.++...+++++|++.++++++.+|++..+++.+|.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~ 84 (186)
T 3as5_A 5 DIRQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGL 84 (186)
T ss_dssp CHHHHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 35678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhhC
Q 007401 566 AREALFCYNEALQDFKHAMVLEPQNKAANLAEKRLRKLIG 605 (605)
Q Consensus 566 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g 605 (605)
++...|++++|.+.++++++.+|++...+..++.++...|
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 124 (186)
T 3as5_A 85 TYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLG 124 (186)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcC
Confidence 9999999999999999999999999999999988876654
No 70
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.33 E-value=2.6e-11 Score=116.41 Aligned_cols=147 Identities=16% Similarity=0.134 Sum_probs=120.7
Q ss_pred chhHHhHHHHHHh--HHHHHHhhhccCCCCCCCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 007401 452 DKFLLDTVLDLYD--SLQEQVNIASNLVPLPDTNGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNR 529 (605)
Q Consensus 452 d~~ll~~a~~l~~--~~~e~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 529 (605)
......++..+.. ...++.....+... ..+.....+..+|..+...|++++|+..|+++++..|++..++..+
T Consensus 91 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~-----~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 165 (243)
T 2q7f_A 91 ATAYYGAGNVYVVKEMYKEAKDMFEKALR-----AGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQF 165 (243)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----HTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHH-----hCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHH
Confidence 3333444443332 24455555544422 2234567899999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 007401 530 AAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAANLAEKRLRKL 603 (605)
Q Consensus 530 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~ 603 (605)
|.++...|++++|++.++++++.+|+++.+++.+|.++...|++++|++.|+++++++|++..++..+..+...
T Consensus 166 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~ 239 (243)
T 2q7f_A 166 GMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLLGHH 239 (243)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHTC----
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999888766543
No 71
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.33 E-value=2.9e-11 Score=114.27 Aligned_cols=135 Identities=14% Similarity=0.046 Sum_probs=115.6
Q ss_pred HHHHHhhhccCCCCCCCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-CCHHHHHH
Q 007401 466 LQEQVNIASNLVPLPDTNGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLEL-GCFQQAEE 544 (605)
Q Consensus 466 ~~e~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-~~~~~A~~ 544 (605)
..++......... ..+.....+..+|.++...|++++|++.|+++++.+|++..++..+|.++... +++++|++
T Consensus 24 ~~~A~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~ 98 (225)
T 2vq2_A 24 YRQATASIEDALK-----SDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMA 98 (225)
T ss_dssp HHHHHHHHHHHHH-----HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHH
T ss_pred HHHHHHHHHHHHH-----hCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHH
Confidence 4455555544322 23445778999999999999999999999999999999999999999999999 99999999
Q ss_pred HHHHHHh--cCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhhC
Q 007401 545 DCSKTIS--LDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAANLAEKRLRKLIG 605 (605)
Q Consensus 545 ~~~~al~--~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g 605 (605)
.++++++ .+|.+..+++.+|.++...|++++|+..|+++++.+|++..++..++.++...|
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~ 161 (225)
T 2vq2_A 99 YFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAG 161 (225)
T ss_dssp HHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcC
Confidence 9999999 667778999999999999999999999999999999999999999888877654
No 72
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.33 E-value=2.3e-11 Score=117.61 Aligned_cols=119 Identities=19% Similarity=0.278 Sum_probs=111.3
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--------------------------hCCCCHHHHHHHHHHHHHcCCHH
Q 007401 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIK--------------------------LNGTSATYYSNRAAAYLELGCFQ 540 (605)
Q Consensus 487 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~--------------------------~~p~~~~~~~~la~~~~~~~~~~ 540 (605)
..+..+..+|..+...|++++|+..|++++. .+|++..++..+|.++...|+++
T Consensus 77 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (258)
T 3uq3_A 77 VISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWP 156 (258)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHH
Confidence 3478899999999999999999999999998 67778899999999999999999
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhhC
Q 007401 541 QAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAANLAEKRLRKLIG 605 (605)
Q Consensus 541 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g 605 (605)
+|++.|+++++++|+++.+++.+|.++...|++++|+..|+++++++|++..++..++.++..+|
T Consensus 157 ~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g 221 (258)
T 3uq3_A 157 NAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVK 221 (258)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999887664
No 73
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.32 E-value=1.8e-11 Score=121.96 Aligned_cols=119 Identities=11% Similarity=0.102 Sum_probs=104.0
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH----------------------
Q 007401 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEE---------------------- 544 (605)
Q Consensus 487 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~---------------------- 544 (605)
...+.+..+|..+.+.|++++|+..|+++++.+|++..+++++|.++...|++++|++
T Consensus 115 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~ 194 (287)
T 3qou_A 115 REEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIE 194 (287)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHH
T ss_pred CchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHH
Confidence 4567788889999999999999999999999999999999999999988888887654
Q ss_pred ------------HHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHhhC
Q 007401 545 ------------DCSKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQN--KAANLAEKRLRKLIG 605 (605)
Q Consensus 545 ------------~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~~~~~~~~~g 605 (605)
.|+++++++|+++.+++++|.++...|++++|+..|+++++.+|++ ..++..++.++..+|
T Consensus 195 l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g 269 (287)
T 3qou_A 195 LLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALG 269 (287)
T ss_dssp HHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHC
T ss_pred HHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcC
Confidence 4555677789999999999999999999999999999999999998 888999888887765
No 74
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.32 E-value=9.2e-12 Score=114.17 Aligned_cols=147 Identities=13% Similarity=0.094 Sum_probs=117.3
Q ss_pred hhHHhHHHHHHhH--HHHHHhhhccCCCCCCCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 007401 453 KFLLDTVLDLYDS--LQEQVNIASNLVPLPDTNGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRA 530 (605)
Q Consensus 453 ~~ll~~a~~l~~~--~~e~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 530 (605)
..++..+..+... ..++....... ....|+....++.+|.++.+.|++++|+..|++++..+| ++..+..++
T Consensus 7 ~~~~~~a~~~~~~g~~~~A~~~~~~a-----l~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~ 80 (176)
T 2r5s_A 7 EQLLKQVSELLQQGEHAQALNVIQTL-----SDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIA 80 (176)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHTS-----CHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHH-----HHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHH
Confidence 3445555444433 44555555443 344677789999999999999999999999999999999 887777766
Q ss_pred HHHH-HcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHhhC
Q 007401 531 AAYL-ELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQN--KAANLAEKRLRKLIG 605 (605)
Q Consensus 531 ~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~~~~~~~~~g 605 (605)
.+.+ ...+..+|++.++++++++|+++.+++++|.++...|++++|+..|+++++.+|+. ..++..++.++..+|
T Consensus 81 ~~~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g 158 (176)
T 2r5s_A 81 KLELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALG 158 (176)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHC
T ss_pred HHHHHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhC
Confidence 5543 33344568999999999999999999999999999999999999999999999975 568888888877654
No 75
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.32 E-value=1.3e-12 Score=146.42 Aligned_cols=116 Identities=13% Similarity=-0.034 Sum_probs=111.6
Q ss_pred ChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 007401 485 SIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRG 564 (605)
Q Consensus 485 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la 564 (605)
.|+....|+.+|.++++.|+|++|++.|+++++++|+++.+++++|.+|.++|++++ +++|+++++++|++..+|+++|
T Consensus 463 ~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg 541 (681)
T 2pzi_A 463 VGWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLA 541 (681)
T ss_dssp HCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHH
Confidence 355688999999999999999999999999999999999999999999999999999 9999999999999999999999
Q ss_pred HHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 007401 565 TAREALFCYNEALQDFKHAMVLEPQNKAANLAEKRLR 601 (605)
Q Consensus 565 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 601 (605)
.++..+|++++|+++|+++++++|++..++..++.++
T Consensus 542 ~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~ 578 (681)
T 2pzi_A 542 RARSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTL 578 (681)
T ss_dssp HHHHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHT
T ss_pred HHHHHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHH
Confidence 9999999999999999999999999999998888875
No 76
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.31 E-value=6.8e-12 Score=134.34 Aligned_cols=119 Identities=16% Similarity=0.165 Sum_probs=113.8
Q ss_pred hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHhcCCCC
Q 007401 486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLEL---------GCFQQAEEDCSKTISLDKKN 556 (605)
Q Consensus 486 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~---------~~~~~A~~~~~~al~~~p~~ 556 (605)
|.....|+.+|.++++.|++++|+++|+++++++|+ ..++.++|.++..+ +++++|++.|+++++++|++
T Consensus 134 p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~ 212 (474)
T 4abn_A 134 PELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKN-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLD 212 (474)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCC-HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCC
Confidence 455789999999999999999999999999999999 79999999999999 99999999999999999999
Q ss_pred HHHHHHHHHHHHHc--------cCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHhhC
Q 007401 557 VKAYLRRGTAREAL--------FCYNEALQDFKHAMVLEP---QNKAANLAEKRLRKLIG 605 (605)
Q Consensus 557 ~~~~~~la~~~~~~--------g~~~~A~~~~~~al~~~p---~~~~~~~~~~~~~~~~g 605 (605)
+.+|+++|.+|..+ |++++|+++|+++++++| ++..++..++.++..+|
T Consensus 213 ~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g 272 (474)
T 4abn_A 213 GRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEE 272 (474)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcC
Confidence 99999999999999 999999999999999999 99999999999987764
No 77
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.31 E-value=3.4e-11 Score=117.91 Aligned_cols=117 Identities=21% Similarity=0.178 Sum_probs=109.3
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 007401 488 ASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAR 567 (605)
Q Consensus 488 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 567 (605)
....|..+|.++...|++++|+..|+++++.+|++..++..+|.+|..+|++++|++.|+++++++|+++.+++++|...
T Consensus 73 ~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~ 152 (272)
T 3u4t_A 73 KSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAY 152 (272)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHH
Confidence 47789999999999999999999999999999999999999999999999999999999999999999999999999555
Q ss_pred HHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhh
Q 007401 568 EALFCYNEALQDFKHAMVLEPQNKAANLAEKRLRKLI 604 (605)
Q Consensus 568 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~ 604 (605)
+..+++++|++.|+++++++|++..++..++.++..+
T Consensus 153 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~ 189 (272)
T 3u4t_A 153 YYNKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQ 189 (272)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHc
Confidence 5667999999999999999999999999888887654
No 78
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.31 E-value=2.4e-11 Score=124.63 Aligned_cols=118 Identities=13% Similarity=0.165 Sum_probs=113.4
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 007401 488 ASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAR 567 (605)
Q Consensus 488 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 567 (605)
.+..+..+|..+...|++++|+..|++++..+|++..+++++|.++...|++++|++.|+++++++|+++.+++++|.++
T Consensus 216 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~ 295 (368)
T 1fch_A 216 DPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISC 295 (368)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHccCHHHHHHHHHHHHHhCCCC-----------HHHHHHHHHHHHhhC
Q 007401 568 EALFCYNEALQDFKHAMVLEPQN-----------KAANLAEKRLRKLIG 605 (605)
Q Consensus 568 ~~~g~~~~A~~~~~~al~~~p~~-----------~~~~~~~~~~~~~~g 605 (605)
..+|++++|+..|+++++++|++ ..++..++.++..+|
T Consensus 296 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 344 (368)
T 1fch_A 296 INLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLG 344 (368)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHT
T ss_pred HHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhC
Confidence 99999999999999999999988 889999998887765
No 79
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.31 E-value=3.6e-12 Score=113.48 Aligned_cols=98 Identities=13% Similarity=0.151 Sum_probs=93.1
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Q 007401 508 AVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLE 587 (605)
Q Consensus 508 A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 587 (605)
+-..|++++.++|++...++.+|.+++..|+|++|+..|+++++++|+++.+|+++|.++..+|++++|+++|+++++++
T Consensus 6 ~~~~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~ 85 (148)
T 2vgx_A 6 GGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD 85 (148)
T ss_dssp CCCSHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred hhhhHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 34568899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhhC
Q 007401 588 PQNKAANLAEKRLRKLIG 605 (605)
Q Consensus 588 p~~~~~~~~~~~~~~~~g 605 (605)
|+++.++..++.++..+|
T Consensus 86 p~~~~~~~~lg~~~~~~g 103 (148)
T 2vgx_A 86 IXEPRFPFHAAECLLQXG 103 (148)
T ss_dssp TTCTHHHHHHHHHHHHTT
T ss_pred CCCchHHHHHHHHHHHcC
Confidence 999999999999987765
No 80
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.31 E-value=4.6e-11 Score=115.62 Aligned_cols=115 Identities=21% Similarity=0.171 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 007401 489 SELLKEKGNAAFKGKQWNKAVNYYSEAIK--LNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTA 566 (605)
Q Consensus 489 a~~~~~~g~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~ 566 (605)
...+..+|..++..|++++|+++|++++. ..|.+..++..+|.++...|++++|++.++++++.+|++..+++.+|.+
T Consensus 105 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 184 (252)
T 2ho1_A 105 ARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADL 184 (252)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHH
Confidence 44555555555555555555555555555 4455555555555555555555555555555555555555555555555
Q ss_pred HHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 007401 567 REALFCYNEALQDFKHAMVLEPQNKAANLAEKRLRKL 603 (605)
Q Consensus 567 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~ 603 (605)
+...|++++|+..|+++++.+|++...+..++.++..
T Consensus 185 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (252)
T 2ho1_A 185 LYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKV 221 (252)
T ss_dssp HHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH
Confidence 5555555555555555555555555555555554443
No 81
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.30 E-value=1.7e-11 Score=127.05 Aligned_cols=120 Identities=19% Similarity=0.097 Sum_probs=111.5
Q ss_pred hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 007401 486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGT 565 (605)
Q Consensus 486 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~ 565 (605)
|.....|..+|..+.+.|++++|++.|+++++.+|++...+.++|.++...|++++|++.|+++++++|++..+++++|.
T Consensus 268 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 347 (388)
T 1w3b_A 268 PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLAS 347 (388)
T ss_dssp SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence 44567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhhC
Q 007401 566 AREALFCYNEALQDFKHAMVLEPQNKAANLAEKRLRKLIG 605 (605)
Q Consensus 566 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g 605 (605)
++...|++++|++.|+++++++|++..++..++.++..+|
T Consensus 348 ~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~ 387 (388)
T 1w3b_A 348 VLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQ 387 (388)
T ss_dssp HHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTC
T ss_pred HHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHcc
Confidence 9999999999999999999999999999999999887764
No 82
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.30 E-value=5.6e-11 Score=112.31 Aligned_cols=120 Identities=14% Similarity=0.081 Sum_probs=109.2
Q ss_pred ChHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHH
Q 007401 485 SIDASELLKEKGNAAFKG-KQWNKAVNYYSEAIK--LNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYL 561 (605)
Q Consensus 485 ~~~~a~~~~~~g~~~~~~-g~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 561 (605)
.+.....+..+|..+... |++++|+..|+++++ ..|.+..++..+|.++...|++++|++.++++++.+|++..+++
T Consensus 72 ~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 151 (225)
T 2vq2_A 72 KPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFK 151 (225)
T ss_dssp CTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHH
T ss_pred CCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHH
Confidence 345577899999999999 999999999999999 66777899999999999999999999999999999999999999
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhh
Q 007401 562 RRGTAREALFCYNEALQDFKHAMVLEP-QNKAANLAEKRLRKLI 604 (605)
Q Consensus 562 ~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~ 604 (605)
.+|.++...|++++|...++++++.+| ++...+.....++...
T Consensus 152 ~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (225)
T 2vq2_A 152 ELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKAL 195 (225)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhc
Confidence 999999999999999999999999999 9988887777776554
No 83
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.29 E-value=7.7e-11 Score=117.55 Aligned_cols=99 Identities=11% Similarity=0.047 Sum_probs=72.8
Q ss_pred HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHH-HHH
Q 007401 500 FKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNE-ALQ 578 (605)
Q Consensus 500 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~-A~~ 578 (605)
...|++++|+..|+++++.+|+++.+++++|.++.++|++++|++.|+++++++|+++.+++++|.++...|++++ +..
T Consensus 177 ~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~ 256 (291)
T 3mkr_A 177 AGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNR 256 (291)
T ss_dssp HCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred hCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHH
Confidence 3456777777777777777777777777777777777777777777777777777777777777777777777765 456
Q ss_pred HHHHHHHhCCCCHHHHHHHH
Q 007401 579 DFKHAMVLEPQNKAANLAEK 598 (605)
Q Consensus 579 ~~~~al~~~p~~~~~~~~~~ 598 (605)
+++++++++|+++.+.....
T Consensus 257 ~~~~~~~~~P~~~~~~d~~~ 276 (291)
T 3mkr_A 257 YLSQLKDAHRSHPFIKEYRA 276 (291)
T ss_dssp HHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHhCCCChHHHHHHH
Confidence 77777777777776655443
No 84
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=99.29 E-value=2.9e-12 Score=107.06 Aligned_cols=95 Identities=26% Similarity=0.346 Sum_probs=89.8
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC------HHHHH
Q 007401 488 ASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKN------VKAYL 561 (605)
Q Consensus 488 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~ 561 (605)
.+..|+.+|..++..|+|++|++.|+++++.+|+++.+++++|.++..+|++++|+++|+++++++|++ ..+++
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 467899999999999999999999999999999999999999999999999999999999999999999 99999
Q ss_pred HHHHHHHHccCHHHHHHHHHH
Q 007401 562 RRGTAREALFCYNEALQDFKH 582 (605)
Q Consensus 562 ~la~~~~~~g~~~~A~~~~~~ 582 (605)
++|.++..+|++++|+..+++
T Consensus 83 ~~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 83 RLELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp HHHHHHHHHHCCCCCSSSSSS
T ss_pred HHHHHHHHHHhHhhhHhHHHH
Confidence 999999999998888776654
No 85
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.29 E-value=3.9e-11 Score=116.12 Aligned_cols=121 Identities=12% Similarity=0.049 Sum_probs=114.2
Q ss_pred ChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCCHHHHHH
Q 007401 485 SIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTIS--LDKKNVKAYLR 562 (605)
Q Consensus 485 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~ 562 (605)
.+.....+..+|..+...|++++|++.|+++++.+|++..++..+|.++...+++++|++.++++++ .+|.+..+++.
T Consensus 67 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 146 (252)
T 2ho1_A 67 DPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFEN 146 (252)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHH
Confidence 3456789999999999999999999999999999999999999999999999999999999999999 88989999999
Q ss_pred HHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhhC
Q 007401 563 RGTAREALFCYNEALQDFKHAMVLEPQNKAANLAEKRLRKLIG 605 (605)
Q Consensus 563 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g 605 (605)
+|.++...|++++|++.|+++++.+|++..++..++.++...|
T Consensus 147 la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g 189 (252)
T 2ho1_A 147 LGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKER 189 (252)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcC
Confidence 9999999999999999999999999999999999998887654
No 86
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.29 E-value=3.4e-11 Score=124.89 Aligned_cols=120 Identities=18% Similarity=0.174 Sum_probs=108.5
Q ss_pred hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 007401 486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGT 565 (605)
Q Consensus 486 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~ 565 (605)
|+....+..+|..+.+.|++++|++.|+++++.+|+++.++.++|.++...|++++|++.|+++++++|+++.++++++.
T Consensus 234 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 313 (388)
T 1w3b_A 234 PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLAN 313 (388)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHH
Confidence 45577888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhhC
Q 007401 566 AREALFCYNEALQDFKHAMVLEPQNKAANLAEKRLRKLIG 605 (605)
Q Consensus 566 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g 605 (605)
++...|++++|+..|+++++++|++..++..++.++...|
T Consensus 314 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g 353 (388)
T 1w3b_A 314 IKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQG 353 (388)
T ss_dssp HHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTT
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC
Confidence 9999999999999999999999999999988888876654
No 87
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.29 E-value=2.3e-11 Score=116.32 Aligned_cols=120 Identities=12% Similarity=-0.023 Sum_probs=106.6
Q ss_pred hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHH------------------cCCHHHHHH
Q 007401 486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSAT---YYSNRAAAYLE------------------LGCFQQAEE 544 (605)
Q Consensus 486 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~---~~~~la~~~~~------------------~~~~~~A~~ 544 (605)
+.....++.+|.++++.|+|++|+..|+++++.+|++.. +++.+|.++.. .+++++|+.
T Consensus 38 ~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~ 117 (225)
T 2yhc_A 38 PYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFS 117 (225)
T ss_dssp TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHH
Confidence 445678999999999999999999999999999999864 89999999986 468999999
Q ss_pred HHHHHHhcCCCCHHHH-----------------HHHHHHHHHccCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHhh
Q 007401 545 DCSKTISLDKKNVKAY-----------------LRRGTAREALFCYNEALQDFKHAMVLEPQNK---AANLAEKRLRKLI 604 (605)
Q Consensus 545 ~~~~al~~~p~~~~~~-----------------~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~~~~~~~~~ 604 (605)
.|+++++.+|++..++ +.+|.+|...|++++|+..|+++++..|+++ .++..++.++..+
T Consensus 118 ~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~ 197 (225)
T 2yhc_A 118 DFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQM 197 (225)
T ss_dssp HHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHc
Confidence 9999999999987554 6789999999999999999999999999986 5688888887776
Q ss_pred C
Q 007401 605 G 605 (605)
Q Consensus 605 g 605 (605)
|
T Consensus 198 g 198 (225)
T 2yhc_A 198 Q 198 (225)
T ss_dssp T
T ss_pred C
Confidence 5
No 88
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.29 E-value=1.8e-11 Score=125.66 Aligned_cols=118 Identities=15% Similarity=0.212 Sum_probs=109.7
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 007401 488 ASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAR 567 (605)
Q Consensus 488 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 567 (605)
....+..+|..+...|++++|+..|+++++.+|+++.+|.++|.+|...|++++|++.|+++++++|+++.+++++|.++
T Consensus 212 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 291 (365)
T 4eqf_A 212 DPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISC 291 (365)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHH
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHccCHHHHHHHHHHHHHhCCCC------------HHHHHHHHHHHHhhC
Q 007401 568 EALFCYNEALQDFKHAMVLEPQN------------KAANLAEKRLRKLIG 605 (605)
Q Consensus 568 ~~~g~~~~A~~~~~~al~~~p~~------------~~~~~~~~~~~~~~g 605 (605)
..+|++++|+..|+++++++|++ ..++..++.++..+|
T Consensus 292 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 341 (365)
T 4eqf_A 292 INLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMD 341 (365)
T ss_dssp HHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHT
T ss_pred HHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcC
Confidence 99999999999999999999873 566777777766553
No 89
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.27 E-value=6.7e-11 Score=118.76 Aligned_cols=119 Identities=12% Similarity=0.145 Sum_probs=113.3
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 007401 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTA 566 (605)
Q Consensus 487 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~ 566 (605)
.....+..+|..+...|++++|+..|+++++.+|++..++..+|.++...|++++|++.|+++++++|++..+++.+|.+
T Consensus 170 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~ 249 (327)
T 3cv0_A 170 NDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVS 249 (327)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 35788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHccCHHHHHHHHHHHHHhCCC------------CHHHHHHHHHHHHhhC
Q 007401 567 REALFCYNEALQDFKHAMVLEPQ------------NKAANLAEKRLRKLIG 605 (605)
Q Consensus 567 ~~~~g~~~~A~~~~~~al~~~p~------------~~~~~~~~~~~~~~~g 605 (605)
+...|++++|++.|+++++++|+ +..++..++.++..+|
T Consensus 250 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 300 (327)
T 3cv0_A 250 YSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMN 300 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTT
T ss_pred HHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcC
Confidence 99999999999999999999999 7888988888887664
No 90
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=99.26 E-value=2.6e-11 Score=102.52 Aligned_cols=97 Identities=9% Similarity=0.039 Sum_probs=87.3
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 007401 506 NKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMV 585 (605)
Q Consensus 506 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 585 (605)
++|++.|+++++.+|+++.+++++|.+|+..|++++|+..|+++++++|++..+|+++|.++..+|++++|+..|+++++
T Consensus 2 ~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 2 QAITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp CCHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 36899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCC--CHHHHHHHHHHHH
Q 007401 586 LEPQ--NKAANLAEKRLRK 602 (605)
Q Consensus 586 ~~p~--~~~~~~~~~~~~~ 602 (605)
++|+ +......+...+.
T Consensus 82 ~~~~~~~~~~~~~l~~~l~ 100 (115)
T 2kat_A 82 AAQSRGDQQVVKELQVFLR 100 (115)
T ss_dssp HHHHHTCHHHHHHHHHHHH
T ss_pred hccccccHHHHHHHHHHHH
Confidence 9874 4555555544443
No 91
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.26 E-value=8.2e-11 Score=101.00 Aligned_cols=104 Identities=29% Similarity=0.485 Sum_probs=99.4
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 007401 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTA 566 (605)
Q Consensus 487 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~ 566 (605)
.....+..+|..+...|++++|+..|++++...|++...+..+|.++...+++++|++.++++++.+|++...++.+|.+
T Consensus 33 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 112 (136)
T 2fo7_A 33 RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNA 112 (136)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Confidence 34678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHccCHHHHHHHHHHHHHhCCCC
Q 007401 567 REALFCYNEALQDFKHAMVLEPQN 590 (605)
Q Consensus 567 ~~~~g~~~~A~~~~~~al~~~p~~ 590 (605)
+...|++++|...++++++.+|++
T Consensus 113 ~~~~~~~~~A~~~~~~~~~~~~~~ 136 (136)
T 2fo7_A 113 YYKQGDYDEAIEYYQKALELDPRS 136 (136)
T ss_dssp HHTTTCHHHHHHHHHHHHHHSTTC
T ss_pred HHHHccHHHHHHHHHHHHccCCCC
Confidence 999999999999999999999863
No 92
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.25 E-value=3.8e-11 Score=123.25 Aligned_cols=117 Identities=14% Similarity=0.168 Sum_probs=102.3
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 007401 489 SELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGT--SATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTA 566 (605)
Q Consensus 489 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~ 566 (605)
+..+..+|..+...|++++|+..|+++++.+|+ ++.+++++|.+|...|++++|++.|+++++++|+++.+|+++|.+
T Consensus 177 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 256 (365)
T 4eqf_A 177 PGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGAT 256 (365)
T ss_dssp ------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 445667799999999999999999999999999 999999999999999999999999999999999999999999999
Q ss_pred HHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhhC
Q 007401 567 REALFCYNEALQDFKHAMVLEPQNKAANLAEKRLRKLIG 605 (605)
Q Consensus 567 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g 605 (605)
+...|++++|+..|+++++++|++..++..++.++..+|
T Consensus 257 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g 295 (365)
T 4eqf_A 257 LANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLG 295 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT
T ss_pred HHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCC
Confidence 999999999999999999999999999999999887764
No 93
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.25 E-value=3.2e-11 Score=118.03 Aligned_cols=143 Identities=8% Similarity=0.047 Sum_probs=116.5
Q ss_pred hHHhHHHHHHhH--HHHHHhhhccCCCCCCCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC----HHHHH
Q 007401 454 FLLDTVLDLYDS--LQEQVNIASNLVPLPDTNGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTS----ATYYS 527 (605)
Q Consensus 454 ~ll~~a~~l~~~--~~e~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~ 527 (605)
.++..+..+... ..++......... ..|.....+..+|.+++..|+|++|+..|+++++ .+.+ ..++.
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~-----~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~ 78 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEA-----KKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFE 78 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHH-----TTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHH-----hCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHH
Confidence 344455444443 4556666555432 2334456899999999999999999999999999 4433 55699
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHH-HHHH
Q 007401 528 NRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAANLAEK-RLRK 602 (605)
Q Consensus 528 ~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~-~~~~ 602 (605)
.+|.++..+|++++|++.|+++++++|+++.+++.+|.++...|++++|+++|+++++++|++..++..++ .++.
T Consensus 79 ~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~ 154 (272)
T 3u4t_A 79 YYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYY 154 (272)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999888 5543
No 94
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.25 E-value=5.4e-11 Score=119.60 Aligned_cols=117 Identities=15% Similarity=0.216 Sum_probs=110.4
Q ss_pred hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 007401 486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLN---------GTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKN 556 (605)
Q Consensus 486 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~---------p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~ 556 (605)
+.....+..+|..+...|++++|+..|+++++.. |.+..++.++|.++...|++++|++.|+++++++|++
T Consensus 190 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 269 (330)
T 3hym_B 190 PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQN 269 (330)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC
T ss_pred CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccc
Confidence 4557889999999999999999999999999986 6778999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 007401 557 VKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAANLAEKRLRK 602 (605)
Q Consensus 557 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 602 (605)
+.+++.+|.++..+|++++|+++|+++++++|++..++..++.++.
T Consensus 270 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 315 (330)
T 3hym_B 270 ASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIE 315 (330)
T ss_dssp SHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999998773
No 95
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.25 E-value=7.7e-11 Score=118.44 Aligned_cols=119 Identities=15% Similarity=0.007 Sum_probs=106.0
Q ss_pred HHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 007401 487 DASELLKEKGNAAFKGK-QWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGT 565 (605)
Q Consensus 487 ~~a~~~~~~g~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~ 565 (605)
.....|+.+|..+...| ++++|+.+|+++++.+|++..++..+|.++...+++++|++.|+++++++|++...++.+|.
T Consensus 88 ~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~ 167 (330)
T 3hym_B 88 SNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGL 167 (330)
T ss_dssp TSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHH
Confidence 44678888999999999 89999999999999999999999999999999999999999999999999998889999999
Q ss_pred HHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhhC
Q 007401 566 AREALFCYNEALQDFKHAMVLEPQNKAANLAEKRLRKLIG 605 (605)
Q Consensus 566 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g 605 (605)
++...|++++|++.|+++++.+|++..++..++.++...|
T Consensus 168 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~ 207 (330)
T 3hym_B 168 EYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNG 207 (330)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcc
Confidence 9999999999999999999999999888888888776553
No 96
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.25 E-value=8.8e-11 Score=119.31 Aligned_cols=111 Identities=25% Similarity=0.260 Sum_probs=106.5
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 007401 488 ASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAR 567 (605)
Q Consensus 488 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 567 (605)
+++.++.+|..++..|+|++|+..|+++++.+|+++.+++.+|.++..+|++++|++.|+++++++|++..+++.+|.++
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 81 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLL 81 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHccCHHHHHHHHHHHHHhCC---CCHHHHHHHH
Q 007401 568 EALFCYNEALQDFKHAMVLEP---QNKAANLAEK 598 (605)
Q Consensus 568 ~~~g~~~~A~~~~~~al~~~p---~~~~~~~~~~ 598 (605)
...|++++|+..|+++++++| ++...+..++
T Consensus 82 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~ 115 (359)
T 3ieg_A 82 LKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLV 115 (359)
T ss_dssp HHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHH
T ss_pred HHcCChHHHHHHHHHHHhcCCcccChHHHHHHHH
Confidence 999999999999999999999 8888877664
No 97
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.24 E-value=1.9e-11 Score=111.92 Aligned_cols=109 Identities=10% Similarity=0.046 Sum_probs=98.4
Q ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH-HHHccCH--
Q 007401 497 NAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTA-REALFCY-- 573 (605)
Q Consensus 497 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~-~~~~g~~-- 573 (605)
..+...|+|++|+..|+++++.+|++..+++.+|.+|...+++++|+..|+++++++|+++.+++.+|.+ +...|++
T Consensus 18 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 18 HQFASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp CCCC-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCC
T ss_pred hhhhhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcch
Confidence 3456788999999999999999999999999999999999999999999999999999999999999999 8899999
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhhC
Q 007401 574 NEALQDFKHAMVLEPQNKAANLAEKRLRKLIG 605 (605)
Q Consensus 574 ~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g 605 (605)
++|+..|+++++++|++..++..++.++...|
T Consensus 98 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 129 (177)
T 2e2e_A 98 AQTRAMIDKALALDSNEITALMLLASDAFMQA 129 (177)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcc
Confidence 99999999999999999999999999887654
No 98
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.23 E-value=6.8e-11 Score=113.02 Aligned_cols=107 Identities=13% Similarity=0.120 Sum_probs=98.2
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH---HHHH
Q 007401 489 SELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTS---ATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVK---AYLR 562 (605)
Q Consensus 489 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~---~~~~ 562 (605)
+..++.+|..+++.|+|++|+..|+++++..|++ ..+++.+|.+|+.+|+|++|++.|+++++.+|+++. +++.
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence 5678999999999999999999999999999876 479999999999999999999999999999999864 8999
Q ss_pred HHHHHHH------------------ccCHHHHHHHHHHHHHhCCCCHHHHH
Q 007401 563 RGTAREA------------------LFCYNEALQDFKHAMVLEPQNKAANL 595 (605)
Q Consensus 563 la~~~~~------------------~g~~~~A~~~~~~al~~~p~~~~~~~ 595 (605)
+|.++.. .|++++|+..|+++++.+|++..+..
T Consensus 84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~ 134 (225)
T 2yhc_A 84 RGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTD 134 (225)
T ss_dssp HHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHH
T ss_pred HHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHH
Confidence 9999987 57999999999999999999876543
No 99
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.23 E-value=2.2e-11 Score=107.32 Aligned_cols=96 Identities=15% Similarity=0.185 Sum_probs=89.0
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Q 007401 510 NYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQ 589 (605)
Q Consensus 510 ~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 589 (605)
..|++++.++|++...++.+|.+++..|+|++|+..|+++++++|+++.+|+.+|.++..+|++++|+.+|+++++++|+
T Consensus 5 ~~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 84 (142)
T 2xcb_A 5 GTLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN 84 (142)
T ss_dssp ----CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred hhHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence 56788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhhC
Q 007401 590 NKAANLAEKRLRKLIG 605 (605)
Q Consensus 590 ~~~~~~~~~~~~~~~g 605 (605)
++.++..++.++..+|
T Consensus 85 ~~~~~~~lg~~~~~~g 100 (142)
T 2xcb_A 85 EPRFPFHAAECHLQLG 100 (142)
T ss_dssp CTHHHHHHHHHHHHTT
T ss_pred CcHHHHHHHHHHHHcC
Confidence 9999999999987765
No 100
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=99.21 E-value=1.8e-10 Score=92.18 Aligned_cols=86 Identities=28% Similarity=0.423 Sum_probs=72.1
Q ss_pred hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 007401 486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGT 565 (605)
Q Consensus 486 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~ 565 (605)
+..+..++.+|..++..|+|++|+..|+++++.+|++..+++++|.++...+++++|++.|+++++++|+++.+++++|.
T Consensus 6 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~ 85 (91)
T 1na3_A 6 GNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGN 85 (91)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 34577888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHcc
Q 007401 566 AREALF 571 (605)
Q Consensus 566 ~~~~~g 571 (605)
++..+|
T Consensus 86 ~~~~~g 91 (91)
T 1na3_A 86 AKQKQG 91 (91)
T ss_dssp HHHHHC
T ss_pred HHHhcC
Confidence 877654
No 101
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.20 E-value=2.2e-10 Score=120.87 Aligned_cols=117 Identities=24% Similarity=0.240 Sum_probs=108.8
Q ss_pred CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHH
Q 007401 483 NGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLR 562 (605)
Q Consensus 483 ~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 562 (605)
...|..+..++.+|..+++.|+|++|+..|+++++.+|++..+++.+|.++..+|++++|++.|+++++++|++..+++.
T Consensus 20 ~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 99 (450)
T 2y4t_A 20 FQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQ 99 (450)
T ss_dssp ---CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHH
Confidence 34678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHccCHHHHHHHHHHHHHhCCCCH---HHHHHHHH
Q 007401 563 RGTAREALFCYNEALQDFKHAMVLEPQNK---AANLAEKR 599 (605)
Q Consensus 563 la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~~~~ 599 (605)
+|.+|..+|++++|++.|+++++++|++. .++..+..
T Consensus 100 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~ 139 (450)
T 2y4t_A 100 RGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIK 139 (450)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHH
Confidence 99999999999999999999999999988 66655533
No 102
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.19 E-value=1.8e-10 Score=126.30 Aligned_cols=110 Identities=10% Similarity=-0.018 Sum_probs=104.3
Q ss_pred ChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 007401 485 SIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRG 564 (605)
Q Consensus 485 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la 564 (605)
.++....+..+|.++...|++++|+++|+++++++|++..+++++|.+|..+|++++|++.|+++++++|++..++++++
T Consensus 53 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 132 (568)
T 2vsy_A 53 HPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLL 132 (568)
T ss_dssp STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 45568899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHc---cCHHHHHHHHHHHHHhCCCCHHHH
Q 007401 565 TAREAL---FCYNEALQDFKHAMVLEPQNKAAN 594 (605)
Q Consensus 565 ~~~~~~---g~~~~A~~~~~~al~~~p~~~~~~ 594 (605)
.++..+ |++++|.+.|+++++.+|++...+
T Consensus 133 ~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 165 (568)
T 2vsy_A 133 NWRRRLCDWRALDVLSAQVRAAVAQGVGAVEPF 165 (568)
T ss_dssp HHHHHTTCCTTHHHHHHHHHHHHHHTCCCSCHH
T ss_pred HHHHHhhccccHHHHHHHHHHHHhcCCcccChH
Confidence 999999 999999999999999999874443
No 103
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.18 E-value=5.7e-10 Score=114.22 Aligned_cols=120 Identities=11% Similarity=0.079 Sum_probs=91.2
Q ss_pred hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC--------------------------------------------
Q 007401 486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGT-------------------------------------------- 521 (605)
Q Consensus 486 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-------------------------------------------- 521 (605)
|.....+..+|.++...|++++|++.|++++...|+
T Consensus 129 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~ 208 (368)
T 1fch_A 129 PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAV 208 (368)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHH
Confidence 445667777788888888888888888888765543
Q ss_pred -------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHH
Q 007401 522 -------SATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAAN 594 (605)
Q Consensus 522 -------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 594 (605)
++.++..+|.+|...|++++|++.|+++++++|+++.+++++|.++...|++++|+..|+++++++|++..++
T Consensus 209 ~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 288 (368)
T 1fch_A 209 RLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSR 288 (368)
T ss_dssp HHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHH
Confidence 4566777777777778888888888888877777777888888888888888888888888888888777777
Q ss_pred HHHHHHHHhhC
Q 007401 595 LAEKRLRKLIG 605 (605)
Q Consensus 595 ~~~~~~~~~~g 605 (605)
..++.++...|
T Consensus 289 ~~l~~~~~~~g 299 (368)
T 1fch_A 289 YNLGISCINLG 299 (368)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHCC
Confidence 77777766553
No 104
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.18 E-value=3e-10 Score=115.31 Aligned_cols=116 Identities=11% Similarity=0.007 Sum_probs=70.4
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC---CCHHHHHHH-
Q 007401 488 ASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDK---KNVKAYLRR- 563 (605)
Q Consensus 488 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p---~~~~~~~~l- 563 (605)
....+..+|.+++..|++++|+..|+++++.+|++..++..+|.++...|++++|+..|+++++++| ++..++..+
T Consensus 36 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~ 115 (359)
T 3ieg_A 36 NYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLV 115 (359)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHH
Confidence 3456666666666666666666666666666666666666666666666666666666666666666 555555544
Q ss_pred -----------HHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 007401 564 -----------GTAREALFCYNEALQDFKHAMVLEPQNKAANLAEKRLRKL 603 (605)
Q Consensus 564 -----------a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~ 603 (605)
|.++...|++++|++.|+++++.+|++..++..++.++..
T Consensus 116 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (359)
T 3ieg_A 116 KADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIK 166 (359)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHH
Confidence 4555555666666666666555555555555555555443
No 105
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.16 E-value=2.2e-10 Score=114.26 Aligned_cols=120 Identities=13% Similarity=0.006 Sum_probs=104.1
Q ss_pred hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHc-CCHHHHHHHHHHHHhcCCCC--
Q 007401 486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTS------ATYYSNRAAAYLEL-GCFQQAEEDCSKTISLDKKN-- 556 (605)
Q Consensus 486 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~-~~~~~A~~~~~~al~~~p~~-- 556 (605)
...+..|.++|.++.+.|+|++|+.+|++++++.+.. +.++.++|.+|... |++++|+.+|++++++.|++
T Consensus 74 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~ 153 (292)
T 1qqe_A 74 DEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQS 153 (292)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCC
Confidence 3457899999999999999999999999999987653 57899999999996 99999999999999998754
Q ss_pred ----HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHH-------HHHHHHHHHHhhC
Q 007401 557 ----VKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKA-------ANLAEKRLRKLIG 605 (605)
Q Consensus 557 ----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~-------~~~~~~~~~~~~g 605 (605)
..++.++|.++..+|++++|+.+|++++++.|++.. .+..++.++..+|
T Consensus 154 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g 213 (292)
T 1qqe_A 154 VALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAAT 213 (292)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcC
Confidence 568999999999999999999999999999987653 4566666665543
No 106
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.13 E-value=4.6e-10 Score=114.38 Aligned_cols=100 Identities=15% Similarity=0.112 Sum_probs=93.9
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 007401 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTA 566 (605)
Q Consensus 487 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~ 566 (605)
..+..|.++|.++++.|+|++|+.+|+++++++|++..+++++|.+|+.++++++|+.+|+++++++|++..++++++.+
T Consensus 194 ~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~ 273 (336)
T 1p5q_A 194 LRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVC 273 (336)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 34788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHccCHHHH-HHHHHHHHHh
Q 007401 567 REALFCYNEA-LQDFKHAMVL 586 (605)
Q Consensus 567 ~~~~g~~~~A-~~~~~~al~~ 586 (605)
+..+|++++| .+.|++++..
T Consensus 274 ~~~~~~~~~a~~~~~~~~~~~ 294 (336)
T 1p5q_A 274 QQRIRRQLAREKKLYANMFER 294 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999 5577777654
No 107
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=99.12 E-value=1e-10 Score=95.72 Aligned_cols=92 Identities=15% Similarity=0.147 Sum_probs=83.9
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Q 007401 492 LKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSAT-YYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREAL 570 (605)
Q Consensus 492 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~-~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 570 (605)
.+++|..+++.|+|++|+..|+++++.+|++.. +++++|.+|+.++++++|+++|+++++++|++..++++
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~-------- 74 (99)
T 2kc7_A 3 QLKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR-------- 74 (99)
T ss_dssp THHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------
Confidence 357899999999999999999999999999999 99999999999999999999999999999999988865
Q ss_pred cCHHHHHHHHHHHHHhCCCCH
Q 007401 571 FCYNEALQDFKHAMVLEPQNK 591 (605)
Q Consensus 571 g~~~~A~~~~~~al~~~p~~~ 591 (605)
+.+.+++..|+++...+|++.
T Consensus 75 ~~~~~a~~~~~~~~~~~p~~~ 95 (99)
T 2kc7_A 75 KMVMDILNFYNKDMYNQLEHH 95 (99)
T ss_dssp HHHHHHHHHHCCTTHHHHCCS
T ss_pred HHHHHHHHHHHHHhccCcccc
Confidence 677888999998888887653
No 108
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.12 E-value=6.8e-10 Score=99.54 Aligned_cols=101 Identities=17% Similarity=0.204 Sum_probs=92.8
Q ss_pred hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 007401 486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGT 565 (605)
Q Consensus 486 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~ 565 (605)
+.....+..+|.++...|+|++|+..|+++++.+|++..+++++|.++..+|++++|++.|+++++++|++..++..++.
T Consensus 44 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~ 123 (166)
T 1a17_A 44 PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQE 123 (166)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 34578899999999999999999999999999999999999999999999999999999999999999999998855555
Q ss_pred H--HHHccCHHHHHHHHHHHHHh
Q 007401 566 A--REALFCYNEALQDFKHAMVL 586 (605)
Q Consensus 566 ~--~~~~g~~~~A~~~~~~al~~ 586 (605)
+ +...|++++|++.+++...+
T Consensus 124 ~~~~~~~~~~~~A~~~~~~~~~~ 146 (166)
T 1a17_A 124 CNKIVKQKAFERAIAGDEHKRSV 146 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcccchHHH
Confidence 5 88899999999999987654
No 109
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.12 E-value=7.2e-10 Score=110.45 Aligned_cols=119 Identities=10% Similarity=-0.055 Sum_probs=105.8
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH--HHcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 007401 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAY--LELGCFQQAEEDCSKTISLDKKNVKAYLRRG 564 (605)
Q Consensus 487 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~--~~~~~~~~A~~~~~~al~~~p~~~~~~~~la 564 (605)
.....+..+|.++.+.|++++|++.|+++++.+|++.......+.+. ...+++++|+..|+++++.+|+++.+++++|
T Consensus 128 ~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la 207 (291)
T 3mkr_A 128 DSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQA 207 (291)
T ss_dssp CSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence 45778999999999999999999999999999999865544444333 3348899999999999999999999999999
Q ss_pred HHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhhC
Q 007401 565 TAREALFCYNEALQDFKHAMVLEPQNKAANLAEKRLRKLIG 605 (605)
Q Consensus 565 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g 605 (605)
.++.++|++++|++.|+++++++|+++.++..++.++...|
T Consensus 208 ~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g 248 (291)
T 3mkr_A 208 ACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLG 248 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999998876654
No 110
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.12 E-value=2.4e-10 Score=111.84 Aligned_cols=121 Identities=14% Similarity=0.151 Sum_probs=108.9
Q ss_pred ChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc----
Q 007401 485 SIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLN--------GTSATYYSNRAAAYLELGCFQQAEEDCSKTISL---- 552 (605)
Q Consensus 485 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~---- 552 (605)
.+..+..+..+|..++..|+|++|+.+|++++.+. |....++.++|.+|...|++++|++.|++++++
T Consensus 39 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 118 (283)
T 3edt_B 39 HPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKV 118 (283)
T ss_dssp SHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence 46788999999999999999999999999999873 566889999999999999999999999999998
Q ss_pred ----CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHhhC
Q 007401 553 ----DKKNVKAYLRRGTAREALFCYNEALQDFKHAMVL--------EPQNKAANLAEKRLRKLIG 605 (605)
Q Consensus 553 ----~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~~~~~~~~~g 605 (605)
+|....+++++|.++...|++++|+..|++++++ .|....++..++.++...|
T Consensus 119 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g 183 (283)
T 3edt_B 119 LGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQG 183 (283)
T ss_dssp HCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHT
T ss_pred cCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcC
Confidence 4667789999999999999999999999999999 6666778888888876654
No 111
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.12 E-value=4.4e-10 Score=96.37 Aligned_cols=86 Identities=16% Similarity=0.230 Sum_probs=81.4
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 007401 520 GTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAANLAEKR 599 (605)
Q Consensus 520 p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~ 599 (605)
|..+..+..+|..++..++|++|+..|+++++++|+++.+|+++|.++..+|++++|+.+|+++++++|++..++..++.
T Consensus 1 p~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 80 (126)
T 3upv_A 1 SMKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKAT 80 (126)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 34578899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhC
Q 007401 600 LRKLIG 605 (605)
Q Consensus 600 ~~~~~g 605 (605)
++..+|
T Consensus 81 ~~~~~~ 86 (126)
T 3upv_A 81 AQIAVK 86 (126)
T ss_dssp HHHHTT
T ss_pred HHHHHh
Confidence 887764
No 112
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=99.12 E-value=5.9e-10 Score=89.14 Aligned_cols=85 Identities=28% Similarity=0.385 Sum_probs=81.1
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 007401 521 TSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAANLAEKRL 600 (605)
Q Consensus 521 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 600 (605)
.+...++.+|.++...+++++|++.|+++++++|+++.+++++|.++...|++++|++.|+++++++|++..++..++.+
T Consensus 7 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~ 86 (91)
T 1na3_A 7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNA 86 (91)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhC
Q 007401 601 RKLIG 605 (605)
Q Consensus 601 ~~~~g 605 (605)
+..+|
T Consensus 87 ~~~~g 91 (91)
T 1na3_A 87 KQKQG 91 (91)
T ss_dssp HHHHC
T ss_pred HHhcC
Confidence 88765
No 113
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.12 E-value=1e-09 Score=115.78 Aligned_cols=120 Identities=13% Similarity=0.027 Sum_probs=94.9
Q ss_pred hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH---HHHHH
Q 007401 486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNV---KAYLR 562 (605)
Q Consensus 486 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~ 562 (605)
|.....|+.+|.+++..|++++|+..|+++++.+|++..++..+|.+|..+|++++|++.|+++++++|++. .++..
T Consensus 57 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 136 (450)
T 2y4t_A 57 PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQ 136 (450)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHH
Confidence 344778888888888888888888888888888888888888888888888888888888888888888777 65544
Q ss_pred H------------HHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhhC
Q 007401 563 R------------GTAREALFCYNEALQDFKHAMVLEPQNKAANLAEKRLRKLIG 605 (605)
Q Consensus 563 l------------a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g 605 (605)
+ |.++...|++++|+..|+++++.+|.+..++..++.++...|
T Consensus 137 l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 191 (450)
T 2y4t_A 137 LIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEG 191 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCC
Confidence 4 566788888888888888888888888887777777766543
No 114
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.10 E-value=5.3e-10 Score=120.80 Aligned_cols=117 Identities=17% Similarity=0.156 Sum_probs=99.6
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 007401 489 SELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTARE 568 (605)
Q Consensus 489 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 568 (605)
...+..+|..+...|++++|++.|+++++.+|+++.++..+|.++...+++++|++.|+++++++|++..+++.+|.++.
T Consensus 276 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~ 355 (537)
T 3fp2_A 276 PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLY 355 (537)
T ss_dssp HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 56778888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhhC
Q 007401 569 ALFCYNEALQDFKHAMVLEPQNKAANLAEKRLRKLIG 605 (605)
Q Consensus 569 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g 605 (605)
..|++++|++.|+++++.+|++..++..++.++...|
T Consensus 356 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 392 (537)
T 3fp2_A 356 KQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRG 392 (537)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTT
T ss_pred HcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhC
Confidence 8888888888888888888888888888887776543
No 115
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.10 E-value=8.4e-10 Score=118.30 Aligned_cols=106 Identities=30% Similarity=0.470 Sum_probs=100.9
Q ss_pred hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 007401 486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGT 565 (605)
Q Consensus 486 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~ 565 (605)
.+.++.|+.+|..+++.|+|++|+..|+++++.+| ++.++..+|.++..+|++++|+++|+++++++|++..+++.+|.
T Consensus 3 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 81 (514)
T 2gw1_A 3 DKYALALKDKGNQFFRNKKYDDAIKYYNWALELKE-DPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRAS 81 (514)
T ss_dssp HHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCc-cHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHH
Confidence 35688999999999999999999999999999999 69999999999999999999999999999999999999999999
Q ss_pred HHHHccCHHHHHHHHHHHHHhCCCCHH
Q 007401 566 AREALFCYNEALQDFKHAMVLEPQNKA 592 (605)
Q Consensus 566 ~~~~~g~~~~A~~~~~~al~~~p~~~~ 592 (605)
++..+|++++|+..|+++++.+|.+..
T Consensus 82 ~~~~~g~~~~A~~~~~~~~~~~~~~~~ 108 (514)
T 2gw1_A 82 ANEGLGKFADAMFDLSVLSLNGDFNDA 108 (514)
T ss_dssp HHHHTTCHHHHHHHHHHHHHSSSCCGG
T ss_pred HHHHHhhHHHHHHHHHHHHhcCCCccc
Confidence 999999999999999999999986643
No 116
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.09 E-value=1.3e-09 Score=119.54 Aligned_cols=120 Identities=13% Similarity=-0.016 Sum_probs=112.8
Q ss_pred hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 007401 486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGT 565 (605)
Q Consensus 486 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~ 565 (605)
+.....|..+|..+.+.|++++|++.|+++++.+|++...|+.++.+|.+.|++++|++.|+++++.+|++..+|+.++.
T Consensus 370 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 449 (597)
T 2xpi_A 370 PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGM 449 (597)
T ss_dssp TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 45578899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhhC
Q 007401 566 AREALFCYNEALQDFKHAMVLEPQNKAANLAEKRLRKLIG 605 (605)
Q Consensus 566 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g 605 (605)
+|.+.|++++|++.|+++++++|++...+..++.++...|
T Consensus 450 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 489 (597)
T 2xpi_A 450 QHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKS 489 (597)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTT
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999988877654
No 117
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.09 E-value=1e-09 Score=110.20 Aligned_cols=113 Identities=10% Similarity=-0.123 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 007401 491 LLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLE-LGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREA 569 (605)
Q Consensus 491 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 569 (605)
.|..+|..+.+.|++++|+..|+++++..|.+..+|...+...+. .|++++|.+.|+++++++|+++.+|..++..+..
T Consensus 136 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~ 215 (308)
T 2ond_A 136 VYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSH 215 (308)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 455555555555555555555555555555555555544444332 4555666666666666666556666666655555
Q ss_pred ccCHHHHHHHHHHHHHh---CCC-CHHHHHHHHHHHHh
Q 007401 570 LFCYNEALQDFKHAMVL---EPQ-NKAANLAEKRLRKL 603 (605)
Q Consensus 570 ~g~~~~A~~~~~~al~~---~p~-~~~~~~~~~~~~~~ 603 (605)
.|++++|...|+++++. .|+ ....+.....++..
T Consensus 216 ~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~ 253 (308)
T 2ond_A 216 LNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESN 253 (308)
T ss_dssp TCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHH
Confidence 56666666666666553 332 44455554444443
No 118
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.08 E-value=8.5e-10 Score=121.02 Aligned_cols=115 Identities=20% Similarity=0.234 Sum_probs=96.4
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh------CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHH
Q 007401 488 ASELLKEKGNAAFKGKQWNKAVNYYSEAIKL------NGTS-ATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAY 560 (605)
Q Consensus 488 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~------~p~~-~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 560 (605)
....|..+|..+.+.|++++|++.|+++++. +|++ ..+|..+|.+|...|++++|++.|+++++++|+++.+|
T Consensus 474 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 553 (597)
T 2xpi_A 474 DPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVH 553 (597)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHH
T ss_pred ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHH
Confidence 4567888888888888888888888888887 5554 77888888888888888888888888888888888888
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 007401 561 LRRGTAREALFCYNEALQDFKHAMVLEPQNKAANLAEKRLRK 602 (605)
Q Consensus 561 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 602 (605)
+.++.+|...|++++|.+.|+++++++|++..++..++.++.
T Consensus 554 ~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~ 595 (597)
T 2xpi_A 554 TAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRALE 595 (597)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTC
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHh
Confidence 888888888888888888888888888888888888877653
No 119
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.08 E-value=3.9e-10 Score=112.46 Aligned_cols=121 Identities=12% Similarity=-0.088 Sum_probs=113.1
Q ss_pred CChHHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHH----HHc---CCHHHHHHHHHHHHhcCC
Q 007401 484 GSIDASELLKEKGNAAFKGK--QWNKAVNYYSEAIKLNGTSATYYSNRAAAY----LEL---GCFQQAEEDCSKTISLDK 554 (605)
Q Consensus 484 ~~~~~a~~~~~~g~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~la~~~----~~~---~~~~~A~~~~~~al~~~p 554 (605)
.+|+...+|+.++.++...+ +++++++.+++++..+|++..+|+.++.++ ..+ +++++++++++++++.+|
T Consensus 62 ~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~p 141 (306)
T 3dra_A 62 ELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDP 141 (306)
T ss_dssp HCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCT
T ss_pred HCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCC
Confidence 36778899999999999999 999999999999999999999999999999 667 789999999999999999
Q ss_pred CCHHHHHHHHHHHHHccCHH--HHHHHHHHHHHhCCCCHHHHHHHHHHHHhh
Q 007401 555 KNVKAYLRRGTAREALFCYN--EALQDFKHAMVLEPQNKAANLAEKRLRKLI 604 (605)
Q Consensus 555 ~~~~~~~~la~~~~~~g~~~--~A~~~~~~al~~~p~~~~~~~~~~~~~~~~ 604 (605)
+|..+|++++.++..+++++ +++++++++++.+|.|..++.+.+.+...+
T Consensus 142 kny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l 193 (306)
T 3dra_A 142 KNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSK 193 (306)
T ss_dssp TCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSS
T ss_pred CCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Confidence 99999999999999999998 999999999999999999999988876543
No 120
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=99.07 E-value=6.3e-10 Score=91.50 Aligned_cols=70 Identities=14% Similarity=0.108 Sum_probs=47.8
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Q 007401 519 NGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEP 588 (605)
Q Consensus 519 ~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 588 (605)
+|+++.+++++|.+|+..|+|++|++.|+++++++|+++.+|+++|.+|..+|++++|++.|++++++.|
T Consensus 3 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~ 72 (100)
T 3ma5_A 3 DPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAR 72 (100)
T ss_dssp --CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhh
Confidence 5666677777777777777777777777777777777777777777777777777777777777766654
No 121
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.06 E-value=5.8e-10 Score=108.99 Aligned_cols=107 Identities=16% Similarity=0.139 Sum_probs=99.3
Q ss_pred HHHCCCHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHH
Q 007401 499 AFKGKQWNKAVNYYSEAIKLN----GTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYN 574 (605)
Q Consensus 499 ~~~~g~~~~A~~~~~~al~~~----p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 574 (605)
+...++|++|+..|+++++.. |.++.+++.+|.++...|++++|++.|+++++++|+++.+++.+|.++...|+++
T Consensus 15 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~ 94 (275)
T 1xnf_A 15 LQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFD 94 (275)
T ss_dssp CCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHH
T ss_pred cCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHH
Confidence 344678999999999999973 5678899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHhhC
Q 007401 575 EALQDFKHAMVLEPQNKAANLAEKRLRKLIG 605 (605)
Q Consensus 575 ~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g 605 (605)
+|+.+|+++++++|++..++..++.++...|
T Consensus 95 ~A~~~~~~al~~~~~~~~~~~~la~~~~~~g 125 (275)
T 1xnf_A 95 AAYEAFDSVLELDPTYNYAHLNRGIALYYGG 125 (275)
T ss_dssp HHHHHHHHHHHHCTTCTHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhcCccccHHHHHHHHHHHHhc
Confidence 9999999999999999999999999887654
No 122
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.05 E-value=1.9e-09 Score=114.66 Aligned_cols=115 Identities=15% Similarity=0.042 Sum_probs=95.3
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-----
Q 007401 488 ASELLKEKGNAAFKGKQWNKAVNYYSEAIKL---------NGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLD----- 553 (605)
Q Consensus 488 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~---------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~----- 553 (605)
.+..|..+|.++..+|+|++|+++|++++++ +|.....|.++|.+|..+|++++|+.+|++++++.
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 3667888999999999999999999999876 56678888999999999999999999999988763
Q ss_pred ---CCCHHHHHHHHHHHHHcc--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 007401 554 ---KKNVKAYLRRGTAREALF--CYNEALQDFKHAMVLEPQNKAANLAEKRLRK 602 (605)
Q Consensus 554 ---p~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 602 (605)
+..+..+.++|.++...+ +|++|+++|+++++++|+++.++..++.+..
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~ 183 (472)
T 4g1t_A 130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASY 183 (472)
T ss_dssp SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 356778888888776654 6899999999999999999888877776543
No 123
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.05 E-value=3e-10 Score=98.01 Aligned_cols=84 Identities=17% Similarity=0.109 Sum_probs=73.7
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH-------HH
Q 007401 521 TSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNK-------AA 593 (605)
Q Consensus 521 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-------~~ 593 (605)
+.+.++.++|..+++.|+|++|+++|++|++++|+++.+|+++|.+|..+|++++|+++|+++++++|++. .+
T Consensus 6 d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~ 85 (127)
T 4gcn_A 6 DAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKA 85 (127)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHH
Confidence 34677889999999999999999999999999999999999999999999999999999999999988764 34
Q ss_pred HHHHHHHHHhh
Q 007401 594 NLAEKRLRKLI 604 (605)
Q Consensus 594 ~~~~~~~~~~~ 604 (605)
+..++.++..+
T Consensus 86 ~~~lg~~~~~~ 96 (127)
T 4gcn_A 86 MSRAGNAFQKQ 96 (127)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHc
Confidence 55555555443
No 124
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.05 E-value=6e-10 Score=111.68 Aligned_cols=108 Identities=11% Similarity=0.126 Sum_probs=103.6
Q ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHH
Q 007401 498 AAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEAL 577 (605)
Q Consensus 498 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 577 (605)
.+...|++++|+..|+++++..|++..++..+|.++...|++++|++.++++++.+|+++.+++.+|.++...|++++|+
T Consensus 147 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 226 (327)
T 3cv0_A 147 FFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEAL 226 (327)
T ss_dssp CTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHH
Confidence 47888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHhhC
Q 007401 578 QDFKHAMVLEPQNKAANLAEKRLRKLIG 605 (605)
Q Consensus 578 ~~~~~al~~~p~~~~~~~~~~~~~~~~g 605 (605)
+.|+++++.+|++..++..++.++...|
T Consensus 227 ~~~~~a~~~~~~~~~~~~~l~~~~~~~g 254 (327)
T 3cv0_A 227 DAYNRALDINPGYVRVMYNMAVSYSNMS 254 (327)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHhc
Confidence 9999999999999999999998887654
No 125
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.05 E-value=7.5e-10 Score=108.23 Aligned_cols=102 Identities=14% Similarity=0.071 Sum_probs=95.6
Q ss_pred ChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc----
Q 007401 485 SIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKL--------NGTSATYYSNRAAAYLELGCFQQAEEDCSKTISL---- 552 (605)
Q Consensus 485 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~---- 552 (605)
.+..+..+..+|.++...|++++|+++|++++.+ +|....++.++|.+|..+|++++|++.+++++++
T Consensus 81 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 160 (283)
T 3edt_B 81 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATR 160 (283)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence 4677899999999999999999999999999998 4667889999999999999999999999999998
Q ss_pred ----CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q 007401 553 ----DKKNVKAYLRRGTAREALFCYNEALQDFKHAMVL 586 (605)
Q Consensus 553 ----~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 586 (605)
+|....+++++|.++..+|++++|+..|++++++
T Consensus 161 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 198 (283)
T 3edt_B 161 LGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTR 198 (283)
T ss_dssp SCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 6777889999999999999999999999999987
No 126
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=99.04 E-value=1.1e-09 Score=91.13 Aligned_cols=83 Identities=12% Similarity=0.135 Sum_probs=77.5
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC------HHHHH
Q 007401 522 SATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQN------KAANL 595 (605)
Q Consensus 522 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~ 595 (605)
++..++.+|.+++..|+|++|++.|+++++++|+++.+++++|.++..+|++++|+++|+++++++|++ ..++.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 467899999999999999999999999999999999999999999999999999999999999999999 78888
Q ss_pred HHHHHHHhh
Q 007401 596 AEKRLRKLI 604 (605)
Q Consensus 596 ~~~~~~~~~ 604 (605)
.++.++..+
T Consensus 83 ~~~~~~~~~ 91 (111)
T 2l6j_A 83 RLELAQGAV 91 (111)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888777654
No 127
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.03 E-value=1.4e-09 Score=98.01 Aligned_cols=87 Identities=16% Similarity=0.065 Sum_probs=82.5
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 007401 519 NGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAANLAEK 598 (605)
Q Consensus 519 ~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 598 (605)
++.++..++.+|.+++..++|++|++.|+++++++|+++.+|+++|.+|..+|++++|+.+|+++++++|++..++..++
T Consensus 7 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg 86 (164)
T 3sz7_A 7 PTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLG 86 (164)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 34568899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhC
Q 007401 599 RLRKLIG 605 (605)
Q Consensus 599 ~~~~~~g 605 (605)
.++..+|
T Consensus 87 ~~~~~~g 93 (164)
T 3sz7_A 87 LARFDMA 93 (164)
T ss_dssp HHHHHTT
T ss_pred HHHHHcc
Confidence 9987764
No 128
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.03 E-value=5.7e-09 Score=102.36 Aligned_cols=140 Identities=16% Similarity=0.118 Sum_probs=110.4
Q ss_pred CchhHHhHHHHHHh--HHHHHHhhhccCCCCCCCCCChHHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHhCCCCHH
Q 007401 451 GDKFLLDTVLDLYD--SLQEQVNIASNLVPLPDTNGSIDASELLKEKGNAAFK----GKQWNKAVNYYSEAIKLNGTSAT 524 (605)
Q Consensus 451 ~d~~ll~~a~~l~~--~~~e~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~~----~g~~~~A~~~~~~al~~~p~~~~ 524 (605)
.......++..+.. ...++.....+... +.....++.+|..+.. .+++++|+.+|+++++.+ ++.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~-------~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~ 75 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACD-------LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSN 75 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-------TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHH-------CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHH
Confidence 33444444544433 24455555544421 3456788999999999 999999999999998875 789
Q ss_pred HHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHhCCCCHHHHHH
Q 007401 525 YYSNRAAAYLE----LGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREA----LFCYNEALQDFKHAMVLEPQNKAANLA 596 (605)
Q Consensus 525 ~~~~la~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~ 596 (605)
+++++|.+|.. .+++++|++.|+++++.+ ++.+++++|.+|.. .+++++|+++|+++++.+ +..++..
T Consensus 76 a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~ 151 (273)
T 1ouv_A 76 GCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK--YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN--DGDGCTI 151 (273)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--CHHHHHH
T ss_pred HHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC--CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC--cHHHHHH
Confidence 99999999999 999999999999999884 88999999999999 999999999999999875 6778888
Q ss_pred HHHHHHh
Q 007401 597 EKRLRKL 603 (605)
Q Consensus 597 ~~~~~~~ 603 (605)
++.++..
T Consensus 152 lg~~~~~ 158 (273)
T 1ouv_A 152 LGSLYDA 158 (273)
T ss_dssp HHHHHHH
T ss_pred HHHHHHc
Confidence 8877654
No 129
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.03 E-value=8.3e-10 Score=109.98 Aligned_cols=107 Identities=17% Similarity=0.147 Sum_probs=91.9
Q ss_pred HHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH-
Q 007401 487 DASELLKEKGNAAFKG-KQWNKAVNYYSEAIKLNGTS------ATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVK- 558 (605)
Q Consensus 487 ~~a~~~~~~g~~~~~~-g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~- 558 (605)
..+..+.++|.++... |++++|+.+|++++++.|.+ ..++.++|.+|..+|+|++|+.+|+++++++|++..
T Consensus 115 ~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 194 (292)
T 1qqe_A 115 RGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLS 194 (292)
T ss_dssp HHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTT
T ss_pred HHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcc
Confidence 4577899999999996 99999999999999998754 578999999999999999999999999999987643
Q ss_pred ------HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHH
Q 007401 559 ------AYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAA 593 (605)
Q Consensus 559 ------~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 593 (605)
+++++|.++..+|++++|+.+|+++++++|+....
T Consensus 195 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~ 235 (292)
T 1qqe_A 195 QWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADS 235 (292)
T ss_dssp GGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-------
T ss_pred cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCc
Confidence 68999999999999999999999999999987653
No 130
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.02 E-value=2e-09 Score=116.16 Aligned_cols=117 Identities=24% Similarity=0.187 Sum_probs=112.0
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 007401 488 ASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAR 567 (605)
Q Consensus 488 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 567 (605)
.+..+..+|..++..|++++|+..|+++++.+|+ ..++..+|.++...+++++|++.|+++++.+|+++.+++.+|.++
T Consensus 242 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 320 (537)
T 3fp2_A 242 AALALCYTGIFHFLKNNLLDAQVLLQESINLHPT-PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMY 320 (537)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHH
Confidence 4678999999999999999999999999999999 999999999999999999999999999999999999999999999
Q ss_pred HHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhhC
Q 007401 568 EALFCYNEALQDFKHAMVLEPQNKAANLAEKRLRKLIG 605 (605)
Q Consensus 568 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g 605 (605)
...|++++|++.|+++++++|++..++..++.++...|
T Consensus 321 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g 358 (537)
T 3fp2_A 321 FILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQG 358 (537)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTT
T ss_pred HhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999998887654
No 131
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.02 E-value=3.4e-09 Score=91.83 Aligned_cols=89 Identities=15% Similarity=0.118 Sum_probs=83.0
Q ss_pred HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHH
Q 007401 517 KLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAANLA 596 (605)
Q Consensus 517 ~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 596 (605)
..++.++..++.+|.+++..++|++|+..|+++++++|+++.+|+++|.++..+|++++|+..|+++++++|++..++..
T Consensus 3 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 82 (137)
T 3q49_B 3 HMKSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFF 82 (137)
T ss_dssp ---CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CCccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHH
Confidence 35678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhC
Q 007401 597 EKRLRKLIG 605 (605)
Q Consensus 597 ~~~~~~~~g 605 (605)
++.++..+|
T Consensus 83 l~~~~~~~~ 91 (137)
T 3q49_B 83 LGQCQLEME 91 (137)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHHHh
Confidence 999887664
No 132
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.02 E-value=3e-09 Score=106.05 Aligned_cols=121 Identities=13% Similarity=-0.001 Sum_probs=112.7
Q ss_pred ChHHHHHHHHHHHHH----HHC---CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH--HHHHHHHHHHhcCCC
Q 007401 485 SIDASELLKEKGNAA----FKG---KQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQ--QAEEDCSKTISLDKK 555 (605)
Q Consensus 485 ~~~~a~~~~~~g~~~----~~~---g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~--~A~~~~~~al~~~p~ 555 (605)
+|+....|..++.++ ... +++++++++++++++.+|.+..+|..++.+...++.++ +++++++++++.||.
T Consensus 99 nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~ 178 (306)
T 3dra_A 99 NEKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK 178 (306)
T ss_dssp CTTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT
T ss_pred CcccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC
Confidence 456677899889888 666 89999999999999999999999999999999999998 999999999999999
Q ss_pred CHHHHHHHHHHHHHccC------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhhC
Q 007401 556 NVKAYLRRGTAREALFC------YNEALQDFKHAMVLEPQNKAANLAEKRLRKLIG 605 (605)
Q Consensus 556 ~~~~~~~la~~~~~~g~------~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g 605 (605)
|..+|.+++.++...++ ++++++++++++..+|+|..++.++..++...|
T Consensus 179 N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~ 234 (306)
T 3dra_A 179 NNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFD 234 (306)
T ss_dssp CHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcC
Confidence 99999999999999998 999999999999999999999999999887654
No 133
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.01 E-value=2e-09 Score=117.27 Aligned_cols=121 Identities=12% Similarity=0.095 Sum_probs=114.7
Q ss_pred CChHHHHHHHHHHHHHHHCCC----------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHh
Q 007401 484 GSIDASELLKEKGNAAFKGKQ----------WNKAVNYYSEAIKLNGTSATYYSNRAAAYLELG--CFQQAEEDCSKTIS 551 (605)
Q Consensus 484 ~~~~~a~~~~~~g~~~~~~g~----------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~--~~~~A~~~~~~al~ 551 (605)
.+|+...+|+.++.++...++ |+++++.|+++++.+|++..+|+.+++++.+++ ++++++++++++++
T Consensus 58 ~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~ 137 (567)
T 1dce_A 58 ANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLE 137 (567)
T ss_dssp HCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHH
T ss_pred HCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHh
Confidence 357778999999999999888 999999999999999999999999999999999 77999999999999
Q ss_pred cCCCCHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhh
Q 007401 552 LDKKNVKAYLRRGTAREALF-CYNEALQDFKHAMVLEPQNKAANLAEKRLRKLI 604 (605)
Q Consensus 552 ~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~ 604 (605)
+||+|..+|++++.++...| .+++++++++++++.+|.|..+|.+.+.++..+
T Consensus 138 ~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l 191 (567)
T 1dce_A 138 ADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQL 191 (567)
T ss_dssp HCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHH
T ss_pred hccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhh
Confidence 99999999999999999999 999999999999999999999999999887653
No 134
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.01 E-value=2.3e-09 Score=91.54 Aligned_cols=81 Identities=15% Similarity=0.088 Sum_probs=76.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhh
Q 007401 525 YYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAANLAEKRLRKLI 604 (605)
Q Consensus 525 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~ 604 (605)
.++.+|..+++.|++++|+..|+++++++|+++.+|+.+|.++...|++++|+.+|+++++++|++..++..++.++...
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 47889999999999999999999999999999999999999999999999999999999999999999999999887765
Q ss_pred C
Q 007401 605 G 605 (605)
Q Consensus 605 g 605 (605)
|
T Consensus 99 g 99 (121)
T 1hxi_A 99 H 99 (121)
T ss_dssp H
T ss_pred C
Confidence 3
No 135
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=99.00 E-value=1.7e-09 Score=91.53 Aligned_cols=85 Identities=15% Similarity=0.038 Sum_probs=77.0
Q ss_pred ChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 007401 485 SIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRG 564 (605)
Q Consensus 485 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la 564 (605)
.|.....++.+|.+++..|+|++|+..|+++++++|+++.+++++|.++..+|++++|++.++++++.+|+++.......
T Consensus 23 ~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 102 (117)
T 3k9i_A 23 GKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVELLLKIIAETSDDETIQSYKQ 102 (117)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHTHH
T ss_pred CccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence 47789999999999999999999999999999999999999999999999999999999999999999999988765444
Q ss_pred HHHHH
Q 007401 565 TAREA 569 (605)
Q Consensus 565 ~~~~~ 569 (605)
.+...
T Consensus 103 ai~~~ 107 (117)
T 3k9i_A 103 AILFY 107 (117)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 33333
No 136
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.00 E-value=1.1e-09 Score=110.38 Aligned_cols=121 Identities=11% Similarity=-0.075 Sum_probs=113.8
Q ss_pred CChHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-C-CHHHHHHHHHHHHhcCCCCHHHH
Q 007401 484 GSIDASELLKEKGNAAFKGK-QWNKAVNYYSEAIKLNGTSATYYSNRAAAYLEL-G-CFQQAEEDCSKTISLDKKNVKAY 560 (605)
Q Consensus 484 ~~~~~a~~~~~~g~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-~-~~~~A~~~~~~al~~~p~~~~~~ 560 (605)
.+|+....|..++.++...+ +++++++.+++++..+|++..+|+.|+.++..+ + ++++++++++++++.+|+|..+|
T Consensus 83 ~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpkNy~AW 162 (349)
T 3q7a_A 83 MNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPKNYHTW 162 (349)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTTCHHHH
T ss_pred hCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCHHHH
Confidence 35677899999999999999 599999999999999999999999999999998 7 89999999999999999999999
Q ss_pred HHHHHHHHHccCHH--------HHHHHHHHHHHhCCCCHHHHHHHHHHHHhh
Q 007401 561 LRRGTAREALFCYN--------EALQDFKHAMVLEPQNKAANLAEKRLRKLI 604 (605)
Q Consensus 561 ~~la~~~~~~g~~~--------~A~~~~~~al~~~p~~~~~~~~~~~~~~~~ 604 (605)
++++.++.+.++++ +++++++++++.+|.|..++.+.+.+...+
T Consensus 163 ~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l 214 (349)
T 3q7a_A 163 AYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSR 214 (349)
T ss_dssp HHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Confidence 99999999999888 999999999999999999999999887654
No 137
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=98.99 E-value=5.9e-10 Score=98.54 Aligned_cols=73 Identities=15% Similarity=0.184 Sum_probs=68.0
Q ss_pred ChHHHHHHHHHHHHHHHCCCH----------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-----------CHHHHH
Q 007401 485 SIDASELLKEKGNAAFKGKQW----------NKAVNYYSEAIKLNGTSATYYSNRAAAYLELG-----------CFQQAE 543 (605)
Q Consensus 485 ~~~~a~~~~~~g~~~~~~g~~----------~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~-----------~~~~A~ 543 (605)
+|+.++.|+++|.++...+++ ++|+..|+++|+++|++..+|+++|.+|..++ +|++|+
T Consensus 32 ~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~ 111 (158)
T 1zu2_A 32 NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLAT 111 (158)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHH
Confidence 467799999999999998875 59999999999999999999999999999885 899999
Q ss_pred HHHHHHHhcCCCCH
Q 007401 544 EDCSKTISLDKKNV 557 (605)
Q Consensus 544 ~~~~~al~~~p~~~ 557 (605)
++|++|++++|++.
T Consensus 112 ~~~~kAl~l~P~~~ 125 (158)
T 1zu2_A 112 QFFQQAVDEQPDNT 125 (158)
T ss_dssp HHHHHHHHHCTTCH
T ss_pred HHHHHHHHhCCCCH
Confidence 99999999999985
No 138
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.99 E-value=2.3e-09 Score=116.69 Aligned_cols=120 Identities=9% Similarity=0.074 Sum_probs=112.6
Q ss_pred ChHHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhcCCCCHHHHH
Q 007401 485 SIDASELLKEKGNAAFKGK--QWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELG-CFQQAEEDCSKTISLDKKNVKAYL 561 (605)
Q Consensus 485 ~~~~a~~~~~~g~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~ 561 (605)
+|+..++|..+++++.+.+ +|++++++++++++.+|.+..+|..++.+...++ .++++++++.++++.+|+|..+|+
T Consensus 103 ~pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~ 182 (567)
T 1dce_A 103 NPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWH 182 (567)
T ss_dssp CTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHH
Confidence 4667899999999999999 7799999999999999999999999999999999 899999999999999999999999
Q ss_pred HHHHHHHHc--------------cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhh
Q 007401 562 RRGTAREAL--------------FCYNEALQDFKHAMVLEPQNKAANLAEKRLRKLI 604 (605)
Q Consensus 562 ~la~~~~~~--------------g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~ 604 (605)
+++.++..+ +.++++++++++++.++|+|..+|.+.+.++...
T Consensus 183 ~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~ 239 (567)
T 1dce_A 183 YRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRA 239 (567)
T ss_dssp HHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCC
T ss_pred HHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcC
Confidence 999999885 6789999999999999999999999999887543
No 139
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.98 E-value=3e-09 Score=90.67 Aligned_cols=88 Identities=18% Similarity=0.056 Sum_probs=83.9
Q ss_pred hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 007401 486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGT 565 (605)
Q Consensus 486 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~ 565 (605)
+.....+..+|.++...|++++|+..|++++..+|++..+++.+|.++..++++++|++.|+++++++|++..+++.++.
T Consensus 43 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 122 (131)
T 2vyi_A 43 PANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKI 122 (131)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHH
Confidence 34478899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHccCH
Q 007401 566 AREALFCY 573 (605)
Q Consensus 566 ~~~~~g~~ 573 (605)
++..+|++
T Consensus 123 ~~~~~~~~ 130 (131)
T 2vyi_A 123 AELKLREA 130 (131)
T ss_dssp HHHHHTTC
T ss_pred HHHHHhcC
Confidence 99998875
No 140
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=98.98 E-value=4.2e-09 Score=105.70 Aligned_cols=121 Identities=9% Similarity=-0.035 Sum_probs=100.4
Q ss_pred ChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 007401 485 SIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSAT-YYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRR 563 (605)
Q Consensus 485 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~-~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 563 (605)
.|.....|..+|..+.+.|++++|...|++++++.|+++. +|.++|.++...|++++|.+.|+++++.+|.+..+|...
T Consensus 95 ~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~ 174 (308)
T 2ond_A 95 LKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTA 174 (308)
T ss_dssp TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHH
T ss_pred CcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 3556778888888888889999999999999988888876 888888888888889999999999998888888887766
Q ss_pred HHHHHH-ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhhC
Q 007401 564 GTAREA-LFCYNEALQDFKHAMVLEPQNKAANLAEKRLRKLIG 605 (605)
Q Consensus 564 a~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g 605 (605)
+..... .|++++|.+.|+++++.+|++..++..++.++...|
T Consensus 175 a~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g 217 (308)
T 2ond_A 175 ALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLN 217 (308)
T ss_dssp HHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCC
Confidence 665443 688999999999999999988888888887776543
No 141
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.98 E-value=2.5e-09 Score=99.73 Aligned_cols=97 Identities=16% Similarity=0.123 Sum_probs=84.9
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 007401 489 SELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTARE 568 (605)
Q Consensus 489 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 568 (605)
...+.++|.++++.|+|++|+.+|+++++++|++..+++++|.+|..++++++|+++|+++++++|++..++..++.++.
T Consensus 88 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 167 (198)
T 2fbn_A 88 ISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVN 167 (198)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHH
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HccCHHHHH-HHHHHHHH
Q 007401 569 ALFCYNEAL-QDFKHAMV 585 (605)
Q Consensus 569 ~~g~~~~A~-~~~~~al~ 585 (605)
.+++++++. ..|.+.+.
T Consensus 168 ~~~~~~~~~~~~~~~~f~ 185 (198)
T 2fbn_A 168 KLKEARKKDKLTFGGMFD 185 (198)
T ss_dssp HHHHHHC-----------
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 999998887 45554443
No 142
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.98 E-value=1.6e-09 Score=89.74 Aligned_cols=87 Identities=21% Similarity=0.250 Sum_probs=82.7
Q ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC--CHHHHH
Q 007401 518 LNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQ--NKAANL 595 (605)
Q Consensus 518 ~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~ 595 (605)
++|++...++.+|.+++..+++++|+..|+++++++|++..+++++|.++...|++++|+++|+++++++|+ +..++.
T Consensus 1 l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~ 80 (112)
T 2kck_A 1 MVDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWA 80 (112)
T ss_dssp CCCSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHH
Confidence 368889999999999999999999999999999999999999999999999999999999999999999999 999999
Q ss_pred HHHHHHHhh
Q 007401 596 AEKRLRKLI 604 (605)
Q Consensus 596 ~~~~~~~~~ 604 (605)
.++.++..+
T Consensus 81 ~l~~~~~~~ 89 (112)
T 2kck_A 81 AKADALRYI 89 (112)
T ss_dssp HHHHHHTTC
T ss_pred HHHHHHHHH
Confidence 999887665
No 143
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.97 E-value=2.3e-09 Score=94.97 Aligned_cols=100 Identities=21% Similarity=0.261 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC----
Q 007401 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTS------ATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKN---- 556 (605)
Q Consensus 487 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---- 556 (605)
..+..+..+|..++..|++++|+.+|++++++.+.. ..++.++|.++...+++++|++.+++++++.++.
T Consensus 7 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 86 (164)
T 3ro3_A 7 AQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRA 86 (164)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcH
Confidence 345666666777777777777777777766654321 2356666777777777777777777666654322
Q ss_pred --HHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q 007401 557 --VKAYLRRGTAREALFCYNEALQDFKHAMVL 586 (605)
Q Consensus 557 --~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 586 (605)
..+++++|.++...|++++|++.+++++++
T Consensus 87 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 118 (164)
T 3ro3_A 87 VEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAI 118 (164)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 446666677777777777777777666655
No 144
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=98.97 E-value=1.4e-09 Score=116.47 Aligned_cols=111 Identities=18% Similarity=0.129 Sum_probs=73.2
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH------HHHHHHHHHHH---cCCHHHHHHHHHHHHhcCCCCHH
Q 007401 488 ASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSAT------YYSNRAAAYLE---LGCFQQAEEDCSKTISLDKKNVK 558 (605)
Q Consensus 488 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~------~~~~la~~~~~---~~~~~~A~~~~~~al~~~p~~~~ 558 (605)
....+..+|..+...|++++|+..|++++...|++.. ++..+|.++.. .|++++|++.|+++++++|++..
T Consensus 371 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~ 450 (514)
T 2gw1_A 371 APEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQ 450 (514)
T ss_dssp CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHH
Confidence 3455666666666666666666666666666665533 66666666666 66666666666666666666666
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 007401 559 AYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAANLAEK 598 (605)
Q Consensus 559 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 598 (605)
+++.+|.++...|++++|...|+++++++|++..++..+.
T Consensus 451 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 490 (514)
T 2gw1_A 451 AKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAIT 490 (514)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhccccHHHHHHHH
Confidence 6666666666666666666666666666666666555443
No 145
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=98.97 E-value=2.9e-09 Score=110.20 Aligned_cols=120 Identities=18% Similarity=0.218 Sum_probs=80.5
Q ss_pred ChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-
Q 007401 485 SIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGT-------SATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKN- 556 (605)
Q Consensus 485 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~- 556 (605)
.+..+..+..+|.+++..|++++|+.+|++++++.+. ...++.++|.+|..+|++++|++.|++++++.++.
T Consensus 139 ~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~ 218 (383)
T 3ulq_A 139 RIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEK 218 (383)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcC
Confidence 3446677777777777777777777777777766332 24567777777777777777777777777664322
Q ss_pred -----HHHHHHHHHHHHHccCHHHHHHHHHHHHH-----hC-CCCHHHHHHHHHHHHhh
Q 007401 557 -----VKAYLRRGTAREALFCYNEALQDFKHAMV-----LE-PQNKAANLAEKRLRKLI 604 (605)
Q Consensus 557 -----~~~~~~la~~~~~~g~~~~A~~~~~~al~-----~~-p~~~~~~~~~~~~~~~~ 604 (605)
..+++++|.+|..+|++++|+.+|+++++ .+ |....++..++.++..+
T Consensus 219 ~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~ 277 (383)
T 3ulq_A 219 QPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKL 277 (383)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHC
Confidence 23677777777777777777777777777 34 55566666666666544
No 146
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.97 E-value=3.5e-09 Score=93.77 Aligned_cols=83 Identities=16% Similarity=0.197 Sum_probs=77.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-------CHH-----HHHHHHHHHHHccCHHHHHHHHHHHHHh----
Q 007401 523 ATYYSNRAAAYLELGCFQQAEEDCSKTISLDKK-------NVK-----AYLRRGTAREALFCYNEALQDFKHAMVL---- 586 (605)
Q Consensus 523 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-------~~~-----~~~~la~~~~~~g~~~~A~~~~~~al~~---- 586 (605)
+..+.++|..+++.|+|++|+..|++|++++|+ +.. +|+++|.++..+|+|++|+.+|++++++
T Consensus 11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~ 90 (159)
T 2hr2_A 11 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR 90 (159)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence 567899999999999999999999999999999 544 9999999999999999999999999999
Q ss_pred ---CCCCHHHH----HHHHHHHHhhC
Q 007401 587 ---EPQNKAAN----LAEKRLRKLIG 605 (605)
Q Consensus 587 ---~p~~~~~~----~~~~~~~~~~g 605 (605)
+|++..++ +..+.++..+|
T Consensus 91 ~e~~pd~~~A~~~~~~~rG~aL~~lg 116 (159)
T 2hr2_A 91 GELNQDEGKLWISAVYSRALALDGLG 116 (159)
T ss_dssp CCTTSTHHHHHHHHHHHHHHHHHHTT
T ss_pred ccCCCchHHHHHHHHHhHHHHHHHCC
Confidence 99999999 99999887765
No 147
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.96 E-value=2.8e-09 Score=91.43 Aligned_cols=87 Identities=20% Similarity=0.166 Sum_probs=82.8
Q ss_pred hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 007401 486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGT 565 (605)
Q Consensus 486 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~ 565 (605)
+.....++.+|.+++..|++++|+.+|+++++.+|++..+++++|.++..++++++|++.|+++++++|++..+++.++.
T Consensus 47 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 126 (133)
T 2lni_A 47 PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQR 126 (133)
T ss_dssp TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence 44578999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHccC
Q 007401 566 AREALFC 572 (605)
Q Consensus 566 ~~~~~g~ 572 (605)
++..+|+
T Consensus 127 ~~~~~~~ 133 (133)
T 2lni_A 127 CMMAQYN 133 (133)
T ss_dssp HHHHHTC
T ss_pred HHHHhcC
Confidence 9988774
No 148
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.96 E-value=6.2e-09 Score=95.06 Aligned_cols=83 Identities=11% Similarity=0.002 Sum_probs=77.4
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC--HHHHHHHHHHHHHccCHHHHHHHH
Q 007401 503 KQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKN--VKAYLRRGTAREALFCYNEALQDF 580 (605)
Q Consensus 503 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~ 580 (605)
++..+|+..|+++++.+|++..+++++|.++...|++++|+..|+++++++|++ ..++++++.++..+|++++|+..|
T Consensus 88 ~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y 167 (176)
T 2r5s_A 88 AAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKY 167 (176)
T ss_dssp HTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHH
T ss_pred cccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHH
Confidence 344568999999999999999999999999999999999999999999999976 669999999999999999999999
Q ss_pred HHHHH
Q 007401 581 KHAMV 585 (605)
Q Consensus 581 ~~al~ 585 (605)
++++.
T Consensus 168 ~~al~ 172 (176)
T 2r5s_A 168 RRQLY 172 (176)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99875
No 149
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.96 E-value=4.8e-10 Score=119.84 Aligned_cols=105 Identities=17% Similarity=0.218 Sum_probs=93.9
Q ss_pred hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 007401 486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGT 565 (605)
Q Consensus 486 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~ 565 (605)
|..+..|.++|.++.++|+|++|++.|+++++++|+++.+++++|.+|..+|++++|++.|+++++++|++..++.+++.
T Consensus 37 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~ 116 (477)
T 1wao_1 37 PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQE 116 (477)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCTTHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 45588999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred H--HHHccCHHHHHHHHH-----------HHHHhCCCC
Q 007401 566 A--REALFCYNEALQDFK-----------HAMVLEPQN 590 (605)
Q Consensus 566 ~--~~~~g~~~~A~~~~~-----------~al~~~p~~ 590 (605)
+ +..+|++++|++.++ ++++++|+.
T Consensus 117 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~~ 154 (477)
T 1wao_1 117 CNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDEY 154 (477)
T ss_dssp HHHHHHHHHHCCC------CCSTTTCCTTSSCCCCTTC
T ss_pred HHHHHHHHHHHHHhccccccchhHhhhhhhhccccccc
Confidence 9 889999999999999 777777653
No 150
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.96 E-value=6.4e-10 Score=113.39 Aligned_cols=103 Identities=14% Similarity=0.104 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH-HH
Q 007401 490 ELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTA-RE 568 (605)
Q Consensus 490 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~-~~ 568 (605)
..|+++|.++++.|+|++|+.+|+++++++|++..+|+++|.+|+.+++|++|+.+|+++++++|++..++..++.+ ..
T Consensus 231 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~ 310 (338)
T 2if4_A 231 PCHLNIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQ 310 (338)
T ss_dssp HHHHHHHHHHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999998 45
Q ss_pred HccCHHHHHHHHHHHHHhCCCCHH
Q 007401 569 ALFCYNEALQDFKHAMVLEPQNKA 592 (605)
Q Consensus 569 ~~g~~~~A~~~~~~al~~~p~~~~ 592 (605)
..++++++.+.|++++..+|++..
T Consensus 311 ~~~~~~~a~~~~~~~l~~~p~~~~ 334 (338)
T 2if4_A 311 EKALYQKQKEMYKGIFKGKDEGGA 334 (338)
T ss_dssp ------------------------
T ss_pred HHHHHHHHHHHHHHhhCCCCCCCC
Confidence 567788899999999999998764
No 151
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=98.95 E-value=3e-09 Score=110.78 Aligned_cols=120 Identities=16% Similarity=0.166 Sum_probs=107.0
Q ss_pred ChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhc------CC
Q 007401 485 SIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSA----TYYSNRAAAYLELGCFQQAEEDCSKTISL------DK 554 (605)
Q Consensus 485 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~~~~~~A~~~~~~al~~------~p 554 (605)
.+..+..+..+|..++..|+|++|+.+|+++++..|++. .+++.+|.+|+.+|++++|++.|++++++ ++
T Consensus 44 ~~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 123 (411)
T 4a1s_A 44 GSSMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRL 123 (411)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred hhHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCch
Confidence 456788899999999999999999999999999999986 58999999999999999999999999988 56
Q ss_pred CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHhh
Q 007401 555 KNVKAYLRRGTAREALFCYNEALQDFKHAMVL------EPQNKAANLAEKRLRKLI 604 (605)
Q Consensus 555 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~~~~~~~~~ 604 (605)
....+++.+|.+|...|++++|+.+|++++++ .+....++..++.++...
T Consensus 124 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~ 179 (411)
T 4a1s_A 124 GEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAK 179 (411)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHc
Confidence 67889999999999999999999999999998 455566777777766543
No 152
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=98.95 E-value=2.3e-09 Score=106.56 Aligned_cols=121 Identities=16% Similarity=0.181 Sum_probs=107.3
Q ss_pred ChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---
Q 007401 485 SIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKL--------NGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLD--- 553 (605)
Q Consensus 485 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--- 553 (605)
.+..+..+..+|.++...|++++|+.+|++++.. .+....++.++|.+|...|++++|++.+++++++.
T Consensus 65 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~ 144 (311)
T 3nf1_A 65 HPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKV 144 (311)
T ss_dssp SHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHh
Confidence 5678899999999999999999999999999987 35567899999999999999999999999999884
Q ss_pred -----CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHhhC
Q 007401 554 -----KKNVKAYLRRGTAREALFCYNEALQDFKHAMVL--------EPQNKAANLAEKRLRKLIG 605 (605)
Q Consensus 554 -----p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~~~~~~~~~g 605 (605)
|....+++++|.++...|++++|+++|++++++ .|....++..++.++...|
T Consensus 145 ~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g 209 (311)
T 3nf1_A 145 LGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQG 209 (311)
T ss_dssp HCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHT
T ss_pred cCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcC
Confidence 556678999999999999999999999999998 6666777888888776654
No 153
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.95 E-value=1.3e-08 Score=99.32 Aligned_cols=140 Identities=11% Similarity=-0.003 Sum_probs=110.4
Q ss_pred chhHHhHHHHHHh--HHHHHHhhhccCCCCCCCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC--HHHHH
Q 007401 452 DKFLLDTVLDLYD--SLQEQVNIASNLVPLPDTNGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTS--ATYYS 527 (605)
Q Consensus 452 d~~ll~~a~~l~~--~~~e~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~ 527 (605)
+..-+..+..+.. ...++.+...... ...|... .++.+|..+++.++|++|+.+|++++...+.. ..+++
T Consensus 102 ~dl~LayA~~L~~~g~y~eA~~~l~~~~-----~~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~ 175 (282)
T 4f3v_A 102 LAITMGFAACEAAQGNYADAMEALEAAP-----VAGSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGV 175 (282)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTSSC-----CTTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHH-----hcCCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHH
Confidence 4444555554533 3455555554432 2345666 89999999999999999999999887753221 45899
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcC--CC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 007401 528 NRAAAYLELGCFQQAEEDCSKTISLD--KK-NVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAANLAEK 598 (605)
Q Consensus 528 ~la~~~~~~~~~~~A~~~~~~al~~~--p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 598 (605)
++|.++..+|++++|+++|++++... |. .+.+++++|.++.++|+.++|...|++++..+|+ ..+...+.
T Consensus 176 ~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL~ 248 (282)
T 4f3v_A 176 AHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAALK 248 (282)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHHh
Confidence 99999999999999999999998654 65 6679999999999999999999999999999999 77766553
No 154
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.95 E-value=2.4e-08 Score=97.81 Aligned_cols=110 Identities=22% Similarity=0.229 Sum_probs=97.6
Q ss_pred HHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCCHHH
Q 007401 488 ASELLKEKGNAAFK----GKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLE----LGCFQQAEEDCSKTISLDKKNVKA 559 (605)
Q Consensus 488 ~a~~~~~~g~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~~~p~~~~~ 559 (605)
....++.+|..+.. .+++++|+.+|+++++. +++.+++++|.+|.. .+++++|+++|+++++.+ ++.+
T Consensus 73 ~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a 148 (273)
T 1ouv_A 73 YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDL--KYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN--DGDG 148 (273)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--CHHH
T ss_pred CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHc--CCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC--cHHH
Confidence 57788899999999 99999999999999987 488999999999999 999999999999999876 6889
Q ss_pred HHHHHHHHHH----ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 007401 560 YLRRGTAREA----LFCYNEALQDFKHAMVLEPQNKAANLAEKRLRKL 603 (605)
Q Consensus 560 ~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~ 603 (605)
++++|.+|.. .+++++|+++|+++++. ++..++..++.++..
T Consensus 149 ~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~ 194 (273)
T 1ouv_A 149 CTILGSLYDAGRGTPKDLKKALASYDKACDL--KDSPGCFNAGNMYHH 194 (273)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHc
Confidence 9999999998 99999999999999987 467888888887765
No 155
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=98.94 E-value=2.6e-09 Score=106.22 Aligned_cols=123 Identities=13% Similarity=-0.000 Sum_probs=107.7
Q ss_pred CCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-
Q 007401 482 TNGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKL--------NGTSATYYSNRAAAYLELGCFQQAEEDCSKTISL- 552 (605)
Q Consensus 482 ~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~- 552 (605)
..+.+..+..+..+|..++..|++++|+.+|++++++ .+....++..+|.+|...|++++|+..+++++++
T Consensus 20 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 99 (311)
T 3nf1_A 20 GYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIR 99 (311)
T ss_dssp CTTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred CCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 4456788999999999999999999999999999995 5667889999999999999999999999999987
Q ss_pred -------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHhh
Q 007401 553 -------DKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLE--------PQNKAANLAEKRLRKLI 604 (605)
Q Consensus 553 -------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~~~~~~~~~ 604 (605)
++....+++++|.++...|++++|+..|++++++. |....++..++.++...
T Consensus 100 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~ 166 (311)
T 3nf1_A 100 EKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQ 166 (311)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTT
T ss_pred HHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHc
Confidence 35567899999999999999999999999999884 44456677777776554
No 156
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.94 E-value=2.8e-09 Score=95.81 Aligned_cols=92 Identities=15% Similarity=0.018 Sum_probs=82.9
Q ss_pred ChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH-HHHHHH
Q 007401 485 SIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNV-KAYLRR 563 (605)
Q Consensus 485 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~l 563 (605)
.+.....|.++|.++++.|+|++|+..|++++.++|+++.+|+.+|.+|..+|+|++|+.+|+++++++|++. .+...+
T Consensus 59 ~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l 138 (162)
T 3rkv_A 59 DRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREM 138 (162)
T ss_dssp HHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 3556789999999999999999999999999999999999999999999999999999999999999999999 677778
Q ss_pred HHHHHHccCHHHH
Q 007401 564 GTAREALFCYNEA 576 (605)
Q Consensus 564 a~~~~~~g~~~~A 576 (605)
..+....+++++.
T Consensus 139 ~~~~~~~~~~~~~ 151 (162)
T 3rkv_A 139 KIVTERRAEKKAD 151 (162)
T ss_dssp HHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHH
Confidence 8887766555443
No 157
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.94 E-value=1.5e-08 Score=101.61 Aligned_cols=118 Identities=9% Similarity=0.082 Sum_probs=109.4
Q ss_pred ChHHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhcCCCCHHHHH
Q 007401 485 SIDASELLKEKGNAAFKGK--QWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGC-FQQAEEDCSKTISLDKKNVKAYL 561 (605)
Q Consensus 485 ~~~~a~~~~~~g~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~-~~~A~~~~~~al~~~p~~~~~~~ 561 (605)
+|.....|..++.++...+ ++++++++++++++.+|.|..+|..++.+....+. ++++++++.++++.+|+|..+|+
T Consensus 104 ~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~ 183 (331)
T 3dss_A 104 NPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWH 183 (331)
T ss_dssp CTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHH
T ss_pred CCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHH
Confidence 4667899999999999998 49999999999999999999999999999999998 69999999999999999999999
Q ss_pred HHHHHHHHc--------------cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 007401 562 RRGTAREAL--------------FCYNEALQDFKHAMVLEPQNKAANLAEKRLRK 602 (605)
Q Consensus 562 ~la~~~~~~--------------g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 602 (605)
+++.++..+ +.++++++++.+++..+|+|..++.+...++.
T Consensus 184 ~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~ 238 (331)
T 3dss_A 184 YRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLG 238 (331)
T ss_dssp HHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 999999888 56999999999999999999999987766543
No 158
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.93 E-value=4e-09 Score=112.16 Aligned_cols=92 Identities=20% Similarity=0.199 Sum_probs=84.5
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 007401 488 ASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAR 567 (605)
Q Consensus 488 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 567 (605)
....|.++|.++++.|+|++|+.+|+++++++|++..+|+++|.+|+.+++|++|+.+|+++++++|++..++.+++.++
T Consensus 316 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~ 395 (457)
T 1kt0_A 316 LLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQ 395 (457)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 37899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHccCHHHHHHH
Q 007401 568 EALFCYNEALQD 579 (605)
Q Consensus 568 ~~~g~~~~A~~~ 579 (605)
..++++++|...
T Consensus 396 ~~~~~~~~a~~~ 407 (457)
T 1kt0_A 396 KKAKEHNERDRR 407 (457)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999988753
No 159
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.93 E-value=1.5e-08 Score=100.73 Aligned_cols=118 Identities=11% Similarity=0.018 Sum_probs=93.4
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHH---hcCCCCH-
Q 007401 488 ASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTS------ATYYSNRAAAYLELGCFQQAEEDCSKTI---SLDKKNV- 557 (605)
Q Consensus 488 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~al---~~~p~~~- 557 (605)
....++.+|..+...|+|++|+.+|++++...+.. ..+++++|.+|..+++|++|+.+|++++ +..+++.
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~ 193 (293)
T 2qfc_A 114 FLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEE 193 (293)
T ss_dssp HHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHH
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCcccc
Confidence 44556778888888899999999999998765443 5688899999999999999999999998 4455543
Q ss_pred ---HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHhhC
Q 007401 558 ---KAYLRRGTAREALFCYNEALQDFKHAMVLEPQ------NKAANLAEKRLRKLIG 605 (605)
Q Consensus 558 ---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~~~~~~~~~g 605 (605)
.+++++|.+|..+|+|++|++++++++++.++ -..++..++.++..+|
T Consensus 194 ~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g 250 (293)
T 2qfc_A 194 FDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLE 250 (293)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTT
T ss_pred chHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcC
Confidence 58889999999999999999999999887532 1566777777776554
No 160
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.92 E-value=4.1e-09 Score=86.55 Aligned_cols=86 Identities=12% Similarity=0.104 Sum_probs=72.5
Q ss_pred ChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--CHHHHHH
Q 007401 485 SIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKK--NVKAYLR 562 (605)
Q Consensus 485 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~ 562 (605)
+|+....|+.+|.++++.|+|++|+..|+++++++|++..+|+++|.+|..+|++++|++.|++++++.|+ +......
T Consensus 3 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~ 82 (100)
T 3ma5_A 3 DPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKDLSE 82 (100)
T ss_dssp --CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCHHHHHH
T ss_pred CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCchhHHHH
Confidence 45678899999999999999999999999999999999999999999999999999999999999998663 3444444
Q ss_pred HHHHHHHc
Q 007401 563 RGTAREAL 570 (605)
Q Consensus 563 la~~~~~~ 570 (605)
+...+...
T Consensus 83 l~~~l~~~ 90 (100)
T 3ma5_A 83 LQDAKLKA 90 (100)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHc
Confidence 44444333
No 161
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=98.92 E-value=7.2e-09 Score=110.07 Aligned_cols=118 Identities=13% Similarity=0.030 Sum_probs=96.1
Q ss_pred ChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhcCC
Q 007401 485 SIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLN--------GTSATYYSNRAAAYLELG--CFQQAEEDCSKTISLDK 554 (605)
Q Consensus 485 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~la~~~~~~~--~~~~A~~~~~~al~~~p 554 (605)
.+..+..|.++|.+|+.+|+|++|+.+|++++++. ++.+..+.++|.++...+ +|++|+++|+++++++|
T Consensus 90 ~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p 169 (472)
T 4g1t_A 90 EIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKP 169 (472)
T ss_dssp TTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHST
T ss_pred chHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCC
Confidence 34557788899999999999999999999998763 356788888888877654 68999999999999999
Q ss_pred CCHHHHHHHHHHHHH---ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 007401 555 KNVKAYLRRGTAREA---LFCYNEALQDFKHAMVLEPQNKAANLAEKRLRK 602 (605)
Q Consensus 555 ~~~~~~~~la~~~~~---~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 602 (605)
+++.++..++.++.. .+++++|++.|+++++++|++..++..++..+.
T Consensus 170 ~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~~~l~~~~~ 220 (472)
T 4g1t_A 170 KNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLH 220 (472)
T ss_dssp TCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHHHHHHHHHHH
Confidence 999999888887544 466788889999999999988888777765443
No 162
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.91 E-value=2.1e-08 Score=100.66 Aligned_cols=122 Identities=12% Similarity=0.094 Sum_probs=112.5
Q ss_pred CCChHHHHHHHHHHHHHHHCCC----------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHH
Q 007401 483 NGSIDASELLKEKGNAAFKGKQ----------WNKAVNYYSEAIKLNGTSATYYSNRAAAYLELG--CFQQAEEDCSKTI 550 (605)
Q Consensus 483 ~~~~~~a~~~~~~g~~~~~~g~----------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~--~~~~A~~~~~~al 550 (605)
..+|+....|+..+.++...++ +++++.++++++..+|.+..+|+.++.++..++ .++++++++.+++
T Consensus 58 ~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l 137 (331)
T 3dss_A 58 GANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFL 137 (331)
T ss_dssp TTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHH
T ss_pred HHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHH
Confidence 3467788899999999887765 799999999999999999999999999999999 4999999999999
Q ss_pred hcCCCCHHHHHHHHHHHHHccC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhh
Q 007401 551 SLDKKNVKAYLRRGTAREALFC-YNEALQDFKHAMVLEPQNKAANLAEKRLRKLI 604 (605)
Q Consensus 551 ~~~p~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~ 604 (605)
++||.|..+|++++.++...|. ++++++++.++++.+|.|..++.+...++..+
T Consensus 138 ~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l 192 (331)
T 3dss_A 138 EADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQL 192 (331)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHH
T ss_pred HhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHh
Confidence 9999999999999999999999 69999999999999999999999998877654
No 163
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.90 E-value=4.6e-09 Score=104.54 Aligned_cols=117 Identities=11% Similarity=0.043 Sum_probs=98.2
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-------CCC
Q 007401 489 SELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTS------ATYYSNRAAAYLELGCFQQAEEDCSKTISL-------DKK 555 (605)
Q Consensus 489 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~al~~-------~p~ 555 (605)
...+..+|..+...++|++|+.+|++++...+.. ..++.++|.+|..+|+|++|+.+|+++++. .+.
T Consensus 115 ~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 194 (293)
T 3u3w_A 115 LQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEF 194 (293)
T ss_dssp HHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHH
T ss_pred HHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhH
Confidence 4455569999999999999999999999965432 447999999999999999999999999953 222
Q ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHhhC
Q 007401 556 NVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQN------KAANLAEKRLRKLIG 605 (605)
Q Consensus 556 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~~~~~~~~~g 605 (605)
...+++++|.+|..+|+|++|++++++++++.++. ..++..++.++..+|
T Consensus 195 ~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g 250 (293)
T 3u3w_A 195 DVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLE 250 (293)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhC
Confidence 34589999999999999999999999999987544 678888888887664
No 164
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.89 E-value=8.6e-09 Score=106.28 Aligned_cols=94 Identities=16% Similarity=0.183 Sum_probs=90.0
Q ss_pred hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 007401 486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGT 565 (605)
Q Consensus 486 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~ 565 (605)
+.....|.++|.++++.|+|++|+++|+++++++|+++.+++++|.+|..++++++|+++|+++++++|++..++..++.
T Consensus 270 ~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~ 349 (370)
T 1ihg_A 270 PVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLK 349 (370)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 56788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHccCHHHHHHH
Q 007401 566 AREALFCYNEALQD 579 (605)
Q Consensus 566 ~~~~~g~~~~A~~~ 579 (605)
++..+++++++.+.
T Consensus 350 ~~~~~~~~~~a~k~ 363 (370)
T 1ihg_A 350 VKQKIKAQKDKEKA 363 (370)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999888654
No 165
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.88 E-value=5.9e-09 Score=96.81 Aligned_cols=101 Identities=11% Similarity=-0.004 Sum_probs=77.1
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCCC-
Q 007401 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKL------NGTSATYYSNRAAAYLELGCFQQAEEDCSKTISL---DKKN- 556 (605)
Q Consensus 487 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~---~p~~- 556 (605)
..+..+..+|..+...|+|++|+.+|++++.+ .+....++.++|.+|...|++++|++.+++++++ .+++
T Consensus 24 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 103 (203)
T 3gw4_A 24 TASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDP 103 (203)
T ss_dssp THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCH
T ss_pred HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccH
Confidence 45777888888888888888888888888873 3445677888888888888888888888888877 3322
Q ss_pred ---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Q 007401 557 ---VKAYLRRGTAREALFCYNEALQDFKHAMVLE 587 (605)
Q Consensus 557 ---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 587 (605)
..+++++|.++...|++++|+..+++++++.
T Consensus 104 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 137 (203)
T 3gw4_A 104 LAASANAYEVATVALHFGDLAGARQEYEKSLVYA 137 (203)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 4567788888888888888888888887653
No 166
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=98.87 E-value=8.8e-09 Score=106.55 Aligned_cols=104 Identities=13% Similarity=0.046 Sum_probs=94.4
Q ss_pred ChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHh-----cC
Q 007401 485 SIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTS------ATYYSNRAAAYLELGCFQQAEEDCSKTIS-----LD 553 (605)
Q Consensus 485 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~al~-----~~ 553 (605)
.+..+..+..+|.++...|+|++|+++|++++++.+.. ..++.++|.+|..+|++++|+++++++++ .+
T Consensus 180 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~ 259 (383)
T 3ulq_A 180 NIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNI 259 (383)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcc
Confidence 45678899999999999999999999999999885533 35899999999999999999999999999 46
Q ss_pred -CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Q 007401 554 -KKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEP 588 (605)
Q Consensus 554 -p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 588 (605)
|..+.+++++|.++..+|++++|+.++++++++.+
T Consensus 260 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 295 (383)
T 3ulq_A 260 LPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQ 295 (383)
T ss_dssp GGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 77889999999999999999999999999998843
No 167
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.87 E-value=5.8e-09 Score=104.64 Aligned_cols=104 Identities=17% Similarity=0.124 Sum_probs=82.4
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC----
Q 007401 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTS------ATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKN---- 556 (605)
Q Consensus 487 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---- 556 (605)
..+..+.++|.++.. |+|++|+++|++++.+.+.. ..++.++|.+|..+|+|++|+++|++++++.+++
T Consensus 114 ~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 192 (307)
T 2ifu_A 114 TAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYP 192 (307)
T ss_dssp HHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChh
Confidence 346778888888877 88888888888888876543 5678888888888888888888888888876543
Q ss_pred --HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHH
Q 007401 557 --VKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKA 592 (605)
Q Consensus 557 --~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 592 (605)
..+++.++.++..+|++++|+.+|++++ ++|+...
T Consensus 193 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~~ 229 (307)
T 2ifu_A 193 TCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGFSG 229 (307)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTSTT
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCCC
Confidence 3477778888888888888888888888 8887754
No 168
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=98.85 E-value=2.3e-08 Score=87.32 Aligned_cols=100 Identities=15% Similarity=0.068 Sum_probs=89.6
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhcC-C-CCHHHHHHHHHHHHHccCHHHHHH
Q 007401 504 QWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELG---CFQQAEEDCSKTISLD-K-KNVKAYLRRGTAREALFCYNEALQ 578 (605)
Q Consensus 504 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~---~~~~A~~~~~~al~~~-p-~~~~~~~~la~~~~~~g~~~~A~~ 578 (605)
....+.+.|++.+..++.+.++.+++|+++.+.+ ++++++..++..++.+ | ++.+.+|++|..++++|+|++|.+
T Consensus 13 ~l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~ 92 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALK 92 (152)
T ss_dssp HHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHH
Confidence 3456777888888888999999999999999988 6789999999999998 7 578999999999999999999999
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHh
Q 007401 579 DFKHAMVLEPQNKAANLAEKRLRKL 603 (605)
Q Consensus 579 ~~~~al~~~p~~~~~~~~~~~~~~~ 603 (605)
+++++++++|+|.++......+..+
T Consensus 93 y~~~lL~ieP~n~QA~~Lk~~ie~~ 117 (152)
T 1pc2_A 93 YVRGLLQTEPQNNQAKELERLIDKA 117 (152)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 9999999999999998887776554
No 169
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.85 E-value=1e-08 Score=101.91 Aligned_cols=102 Identities=15% Similarity=0.127 Sum_probs=89.6
Q ss_pred hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC--
Q 007401 486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKL-------NGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKN-- 556 (605)
Q Consensus 486 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~-------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~-- 556 (605)
...+..+..+|.++...|+|++|+.+|+++++. .+....+++++|.+|..+++|++|++++++++++.++.
T Consensus 152 ~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~ 231 (293)
T 3u3w_A 152 YQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINS 231 (293)
T ss_dssp THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTB
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCc
Confidence 356778999999999999999999999999953 22335689999999999999999999999999886543
Q ss_pred ----HHHHHHHHHHHHHcc-CHHHHHHHHHHHHHhC
Q 007401 557 ----VKAYLRRGTAREALF-CYNEALQDFKHAMVLE 587 (605)
Q Consensus 557 ----~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~ 587 (605)
+.+++++|.++..+| ++++|+++|++++.+.
T Consensus 232 ~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~ 267 (293)
T 3u3w_A 232 MALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFF 267 (293)
T ss_dssp CTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 789999999999999 5799999999999764
No 170
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.85 E-value=4.4e-08 Score=98.75 Aligned_cols=116 Identities=10% Similarity=0.060 Sum_probs=103.1
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 007401 489 SELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELG-CFQQAEEDCSKTISLDKKNVKAYLRRGTAR 567 (605)
Q Consensus 489 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 567 (605)
.+.+..+.....+.+..++|++.+++++.++|++..+|+.++.++..++ .+++++++++++++.+|++..+|+.++.++
T Consensus 54 ~~~~~~~r~~~~~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL 133 (349)
T 3q7a_A 54 KDAMDYFRAIAAKEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLL 133 (349)
T ss_dssp HHHHHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 3344444445555666689999999999999999999999999999999 599999999999999999999999999999
Q ss_pred HHc-c-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhh
Q 007401 568 EAL-F-CYNEALQDFKHAMVLEPQNKAANLAEKRLRKLI 604 (605)
Q Consensus 568 ~~~-g-~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~ 604 (605)
... + ++++++++++++++.+|+|..++.+.+.+...+
T Consensus 134 ~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l 172 (349)
T 3q7a_A 134 DRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHF 172 (349)
T ss_dssp HHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHH
T ss_pred HHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Confidence 998 8 899999999999999999999999998887654
No 171
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=98.84 E-value=1.2e-08 Score=101.99 Aligned_cols=116 Identities=17% Similarity=0.196 Sum_probs=100.1
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc------CCCCH
Q 007401 488 ASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTS----ATYYSNRAAAYLELGCFQQAEEDCSKTISL------DKKNV 557 (605)
Q Consensus 488 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~~~~~~A~~~~~~al~~------~p~~~ 557 (605)
....++..|..++..|++++|+..|+++++..|++ ..++..+|.++...|++++|++.+++++++ .+...
T Consensus 4 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 83 (338)
T 3ro2_A 4 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEA 83 (338)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHH
Confidence 45678889999999999999999999999999998 578899999999999999999999999887 44557
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHh
Q 007401 558 KAYLRRGTAREALFCYNEALQDFKHAMVLEPQN------KAANLAEKRLRKL 603 (605)
Q Consensus 558 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~~~~~~~~ 603 (605)
.+++.+|.++...|++++|+..+++++++.+.. ..++..++.++..
T Consensus 84 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~ 135 (338)
T 3ro2_A 84 KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHA 135 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHH
Confidence 799999999999999999999999999886543 2255556655543
No 172
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.83 E-value=1.5e-08 Score=95.65 Aligned_cols=111 Identities=13% Similarity=0.002 Sum_probs=86.7
Q ss_pred HHHHHHHHHHHHHHCC----CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCC--CCH
Q 007401 488 ASELLKEKGNAAFKGK----QWNKAVNYYSEAIKLNGTSATYYSNRAAAYLE----LGCFQQAEEDCSKTISLDK--KNV 557 (605)
Q Consensus 488 ~a~~~~~~g~~~~~~g----~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~~~p--~~~ 557 (605)
.+..++.+|..|.. + ++++|+.+|+++++ +.++.+++++|.+|.. .+++++|+++|+++.+.++ +++
T Consensus 49 ~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~--~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~ 125 (212)
T 3rjv_A 49 DGDALALLAQLKIR-NPQQADYPQARQLAEKAVE--AGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAV 125 (212)
T ss_dssp CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHH--TTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHH
T ss_pred CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchH
Confidence 46777888888777 6 78888888888854 4678888888888876 7788888888888888777 347
Q ss_pred HHHHHHHHHHHH----ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 007401 558 KAYLRRGTAREA----LFCYNEALQDFKHAMVLEPQNKAANLAEKRLRK 602 (605)
Q Consensus 558 ~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 602 (605)
.+++++|.+|.. .+++++|+.+|+++.++ +++..+...++.++.
T Consensus 126 ~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~~Lg~~y~ 173 (212)
T 3rjv_A 126 DAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAEYWAGMMFQ 173 (212)
T ss_dssp HHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHHHHHHHHH
Confidence 888888888888 77888888888888887 566677777777664
No 173
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.83 E-value=3.4e-08 Score=83.18 Aligned_cols=85 Identities=28% Similarity=0.440 Sum_probs=80.5
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 007401 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTA 566 (605)
Q Consensus 487 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~ 566 (605)
.....++.+|..+...|++++|+..|++++...|++...+..+|.++...+++++|+..++++++++|+++.++..++.+
T Consensus 41 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 120 (125)
T 1na0_A 41 NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNA 120 (125)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 44678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcc
Q 007401 567 REALF 571 (605)
Q Consensus 567 ~~~~g 571 (605)
+...|
T Consensus 121 ~~~~g 125 (125)
T 1na0_A 121 KQKQG 125 (125)
T ss_dssp HHHHC
T ss_pred HHhcc
Confidence 87764
No 174
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.82 E-value=1.3e-08 Score=96.14 Aligned_cols=112 Identities=9% Similarity=-0.035 Sum_probs=100.8
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC----CHHHHHHHHHHHHhcCCCCHHHHHH
Q 007401 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELG----CFQQAEEDCSKTISLDKKNVKAYLR 562 (605)
Q Consensus 487 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~----~~~~A~~~~~~al~~~p~~~~~~~~ 562 (605)
..+..++.+|..++..+++++|+++|+++++. .++.+++++|.+|.. + ++++|+++|+++.+ +.++.++++
T Consensus 16 g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~--~g~~~a~~~ 90 (212)
T 3rjv_A 16 GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ--GDGDALALLAQLKIR-NPQQADYPQARQLAEKAVE--AGSKSGEIV 90 (212)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHH--TTCHHHHHH
T ss_pred CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHH--CCCHHHHHH
Confidence 34788999999999999999999999999875 689999999999988 7 89999999999965 578999999
Q ss_pred HHHHHHH----ccCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHh
Q 007401 563 RGTAREA----LFCYNEALQDFKHAMVLEPQ--NKAANLAEKRLRKL 603 (605)
Q Consensus 563 la~~~~~----~g~~~~A~~~~~~al~~~p~--~~~~~~~~~~~~~~ 603 (605)
+|.+|.. .+++++|+++|+++.+..+. ++.++..++.++..
T Consensus 91 Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~ 137 (212)
T 3rjv_A 91 LARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYAS 137 (212)
T ss_dssp HHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHc
Confidence 9999988 89999999999999998873 48888888888754
No 175
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.81 E-value=1.3e-08 Score=102.16 Aligned_cols=103 Identities=10% Similarity=0.035 Sum_probs=69.5
Q ss_pred hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---
Q 007401 486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGT------SATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKN--- 556 (605)
Q Consensus 486 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~--- 556 (605)
...+..+.++|.++.+.|+|++|+.+|++++++.+. ...++.++|.+|.. +++++|+.+|++++++.+..
T Consensus 73 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~ 151 (307)
T 2ifu_A 73 FHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERL 151 (307)
T ss_dssp HHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCCh
Confidence 455667777777777777777777777777766432 14566677777766 77777777777777665432
Q ss_pred ---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Q 007401 557 ---VKAYLRRGTAREALFCYNEALQDFKHAMVLEPQ 589 (605)
Q Consensus 557 ---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 589 (605)
..++.++|.+|..+|+|++|+.+|++++++.++
T Consensus 152 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~ 187 (307)
T 2ifu_A 152 RQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKE 187 (307)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 456677777777777777777777777776543
No 176
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.80 E-value=4.6e-08 Score=81.50 Aligned_cols=84 Identities=19% Similarity=0.186 Sum_probs=79.4
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 007401 522 SATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAANLAEKRLR 601 (605)
Q Consensus 522 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 601 (605)
.+..++.+|.+++..+++++|+..|+++++.+|+++.+++.+|.++...|++++|+..++++++++|++..++..++.++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred HhhC
Q 007401 602 KLIG 605 (605)
Q Consensus 602 ~~~g 605 (605)
...|
T Consensus 83 ~~~~ 86 (118)
T 1elw_A 83 EFLN 86 (118)
T ss_dssp HHTT
T ss_pred HHHh
Confidence 7654
No 177
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=98.80 E-value=1.9e-08 Score=104.03 Aligned_cols=117 Identities=17% Similarity=0.194 Sum_probs=101.4
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc------CCCC
Q 007401 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTS----ATYYSNRAAAYLELGCFQQAEEDCSKTISL------DKKN 556 (605)
Q Consensus 487 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~~~~~~A~~~~~~al~~------~p~~ 556 (605)
..+..+..+|..++..|+|++|+.+|+++++..|++ ..++..+|.+++..|++++|+..+++++++ .+..
T Consensus 7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 86 (406)
T 3sf4_A 7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGE 86 (406)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHH
Confidence 346788999999999999999999999999999998 468999999999999999999999999887 3445
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHh
Q 007401 557 VKAYLRRGTAREALFCYNEALQDFKHAMVLEPQN------KAANLAEKRLRKL 603 (605)
Q Consensus 557 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~~~~~~~~ 603 (605)
..+++.+|.++...|++++|+..+++++++.+.. ..++..++.++..
T Consensus 87 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~ 139 (406)
T 3sf4_A 87 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHA 139 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHH
Confidence 7799999999999999999999999999987643 3356666665544
No 178
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.80 E-value=3.6e-08 Score=97.84 Aligned_cols=99 Identities=10% Similarity=-0.031 Sum_probs=88.9
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC--HHHHHHHH
Q 007401 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKN--VKAYLRRG 564 (605)
Q Consensus 487 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~la 564 (605)
+....+...+..+.+.+++++|+..|++++..+|++..+++++|.++...|++++|++.|+++++.+|++ ..++.+++
T Consensus 183 ~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~ 262 (287)
T 3qou_A 183 DTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQ 262 (287)
T ss_dssp SHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHH
T ss_pred chHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHH
Confidence 3345555666667777777888888999999999999999999999999999999999999999999998 88999999
Q ss_pred HHHHHccCHHHHHHHHHHHHH
Q 007401 565 TAREALFCYNEALQDFKHAMV 585 (605)
Q Consensus 565 ~~~~~~g~~~~A~~~~~~al~ 585 (605)
.++..+|+.++|...|++++.
T Consensus 263 ~~~~~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 263 EILAALGTGDALASXYRRQLY 283 (287)
T ss_dssp HHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHcCCCCcHHHHHHHHHH
Confidence 999999999999999999885
No 179
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=98.80 E-value=3.7e-08 Score=80.12 Aligned_cols=76 Identities=17% Similarity=0.215 Sum_probs=69.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH-HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHH--HHHHHHH
Q 007401 526 YSNRAAAYLELGCFQQAEEDCSKTISLDKKNVK-AYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAAN--LAEKRLR 601 (605)
Q Consensus 526 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~--~~~~~~~ 601 (605)
.+.+|.+++..+++++|++.|+++++++|+++. +++++|.++..+|++++|+++|+++++++|++..++ ..+..++
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~a~ 81 (99)
T 2kc7_A 3 QLKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQARKMVMDIL 81 (99)
T ss_dssp THHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 367899999999999999999999999999999 999999999999999999999999999999998877 4444443
No 180
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=98.80 E-value=1.2e-08 Score=105.39 Aligned_cols=119 Identities=18% Similarity=0.199 Sum_probs=75.5
Q ss_pred hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---
Q 007401 486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTS------ATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKN--- 556 (605)
Q Consensus 486 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~--- 556 (605)
+..+..+..+|..+...|++++|+.+|++++++.++. ..++.++|.+|..+|++++|+.++++++++.++.
T Consensus 184 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 263 (406)
T 3sf4_A 184 AAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDR 263 (406)
T ss_dssp HHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCc
Confidence 4455666777777777777777777777776654433 2266677777777777777777777776665544
Q ss_pred ---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHhh
Q 007401 557 ---VKAYLRRGTAREALFCYNEALQDFKHAMVLEPQN------KAANLAEKRLRKLI 604 (605)
Q Consensus 557 ---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~~~~~~~~~ 604 (605)
..+++.+|.++...|++++|+..|++++++.+.. ..++..++.++...
T Consensus 264 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~ 320 (406)
T 3sf4_A 264 AVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTAL 320 (406)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHc
Confidence 5566667777777777777777777776664432 34455555554443
No 181
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.79 E-value=3.1e-08 Score=87.58 Aligned_cols=104 Identities=17% Similarity=0.177 Sum_probs=91.0
Q ss_pred hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC----
Q 007401 486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTS------ATYYSNRAAAYLELGCFQQAEEDCSKTISLDKK---- 555 (605)
Q Consensus 486 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~---- 555 (605)
...+..+..+|..+...|++++|+++|++++.+.+.. ..++.++|.++...+++++|++.+++++++.+.
T Consensus 46 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~ 125 (164)
T 3ro3_A 46 AAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDR 125 (164)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccch
Confidence 3456789999999999999999999999999876543 678999999999999999999999999987432
Q ss_pred --CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Q 007401 556 --NVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQ 589 (605)
Q Consensus 556 --~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 589 (605)
...+++.+|.++...|++++|.+.+++++++...
T Consensus 126 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 161 (164)
T 3ro3_A 126 IGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 161 (164)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT
T ss_pred HhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence 2568999999999999999999999999987543
No 182
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=98.79 E-value=2.7e-08 Score=102.69 Aligned_cols=102 Identities=18% Similarity=-0.014 Sum_probs=80.7
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-----cCCC
Q 007401 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNG------TSATYYSNRAAAYLELGCFQQAEEDCSKTIS-----LDKK 555 (605)
Q Consensus 487 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~-----~~p~ 555 (605)
..+..+..+|.++...|+|++|+++|++++++.+ ....++.++|.+|..+|++++|+++++++++ .+|.
T Consensus 180 ~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~ 259 (378)
T 3q15_A 180 RTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDL 259 (378)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGG
T ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChh
Confidence 4577788888888888888888888888887632 1245777888888888888888888888888 6777
Q ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Q 007401 556 NVKAYLRRGTAREALFCYNEALQDFKHAMVLEP 588 (605)
Q Consensus 556 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 588 (605)
...+++++|.++..+|++++|+.++++++++.+
T Consensus 260 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 292 (378)
T 3q15_A 260 LPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHIT 292 (378)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 777888888888888888888888888888754
No 183
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=98.79 E-value=4e-08 Score=101.44 Aligned_cols=139 Identities=10% Similarity=-0.056 Sum_probs=100.1
Q ss_pred HHHHHhhhccCCCCC-CCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-----hCCCCHHHHHHHHHHHHHcCCH
Q 007401 466 LQEQVNIASNLVPLP-DTNGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIK-----LNGTSATYYSNRAAAYLELGCF 539 (605)
Q Consensus 466 ~~e~~~~~~~~~~~~-~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~-----~~p~~~~~~~~la~~~~~~~~~ 539 (605)
..++.....+..... ........+..+.++|.++...|++++|+.+|++++. .+|....++.++|.+|..+|++
T Consensus 198 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~ 277 (378)
T 3q15_A 198 YDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQT 277 (378)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCH
Confidence 445555554443222 2233445678899999999999999999999999999 7788899999999999999999
Q ss_pred HHHHHHHHHHHhcC-----CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHhhC
Q 007401 540 QQAEEDCSKTISLD-----KKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQN---KAANLAEKRLRKLIG 605 (605)
Q Consensus 540 ~~A~~~~~~al~~~-----p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~~~~~~~~~g 605 (605)
++|+.++++++++. +.....+..++.++...++.+...+.+...-+ .... ......++.++...|
T Consensus 278 ~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~-~~~~~~~~~~~~~la~~y~~~g 350 (378)
T 3q15_A 278 QKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEK-KNLHAYIEACARSAAAVFESSC 350 (378)
T ss_dssp HHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh-CCChhHHHHHHHHHHHHHHHCC
Confidence 99999999999984 44455677788888888888444444433333 3222 234555666665543
No 184
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.78 E-value=8e-08 Score=82.04 Aligned_cols=87 Identities=9% Similarity=0.028 Sum_probs=77.3
Q ss_pred hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHH
Q 007401 486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTS---ATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLR 562 (605)
Q Consensus 486 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 562 (605)
+.....++.+|.++++.|+|++|+..|+++++.+|++ +.+++.+|.++..+|++++|++.|+++++.+|+++.+...
T Consensus 36 ~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a 115 (129)
T 2xev_A 36 VYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQYPGSDAARVA 115 (129)
T ss_dssp TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTSHHHHHH
T ss_pred cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHH
Confidence 3445889999999999999999999999999999999 8999999999999999999999999999999999988777
Q ss_pred HHHHHHHccC
Q 007401 563 RGTAREALFC 572 (605)
Q Consensus 563 la~~~~~~g~ 572 (605)
+..+....++
T Consensus 116 ~~~l~~l~~~ 125 (129)
T 2xev_A 116 QERLQSIRLG 125 (129)
T ss_dssp HHHHHHHC--
T ss_pred HHHHHHHHhh
Confidence 7666555443
No 185
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.78 E-value=3.5e-08 Score=79.62 Aligned_cols=73 Identities=16% Similarity=0.117 Sum_probs=65.0
Q ss_pred CCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH
Q 007401 519 NGTSATYYSNRAAAYLELGC---FQQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNK 591 (605)
Q Consensus 519 ~p~~~~~~~~la~~~~~~~~---~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 591 (605)
+|+++..+..+|.+++..++ .++|...+++++++||+++.+++.+|..+++.|+|++|+..|+++++.+|.++
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~ 77 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNL 77 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTC
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCc
Confidence 58889999999999987666 78999999999999999999999999999999999999999999999988853
No 186
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.78 E-value=5.2e-08 Score=85.15 Aligned_cols=89 Identities=13% Similarity=0.136 Sum_probs=83.1
Q ss_pred HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHH
Q 007401 517 KLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKN---VKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAA 593 (605)
Q Consensus 517 ~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 593 (605)
...+.+...++.+|.+++..++|++|++.|+++++++|++ ..+++++|.++...|++++|+..|+++++++|++..+
T Consensus 22 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 101 (148)
T 2dba_A 22 TPGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKA 101 (148)
T ss_dssp CTTCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHH
T ss_pred ccchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHH
Confidence 3467889999999999999999999999999999999988 8999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhC
Q 007401 594 NLAEKRLRKLIG 605 (605)
Q Consensus 594 ~~~~~~~~~~~g 605 (605)
+..++.++..+|
T Consensus 102 ~~~~a~~~~~~~ 113 (148)
T 2dba_A 102 LYRRSQALEKLG 113 (148)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHcC
Confidence 999998887654
No 187
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.78 E-value=3.2e-08 Score=83.13 Aligned_cols=86 Identities=12% Similarity=0.045 Sum_probs=74.2
Q ss_pred hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--CHHHHHHH
Q 007401 486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKK--NVKAYLRR 563 (605)
Q Consensus 486 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~l 563 (605)
|.....++.+|..++..|++++|+..|+++++.+|++..+++++|.+|..+|++++|+..|+++++++|+ +......+
T Consensus 16 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~l 95 (115)
T 2kat_A 16 TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAAAQSRGDQQVVKEL 95 (115)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccccHHHHHHH
Confidence 4557899999999999999999999999999999999999999999999999999999999999999874 44555555
Q ss_pred HHHHHHcc
Q 007401 564 GTAREALF 571 (605)
Q Consensus 564 a~~~~~~g 571 (605)
...+..++
T Consensus 96 ~~~l~~l~ 103 (115)
T 2kat_A 96 QVFLRRLA 103 (115)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhc
Confidence 54444443
No 188
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.76 E-value=2.6e-07 Score=91.71 Aligned_cols=119 Identities=10% Similarity=0.013 Sum_probs=99.2
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC----
Q 007401 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSA------TYYSNRAAAYLELGCFQQAEEDCSKTISLDKKN---- 556 (605)
Q Consensus 487 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~------~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---- 556 (605)
.....+...+..++..|+|++|++.|+++++..+... ..++.+|.++...+++++|+..+++++++.+..
T Consensus 73 ~~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~ 152 (293)
T 2qfc_A 73 ERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVY 152 (293)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTT
T ss_pred hHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchH
Confidence 3456677889999999999999999999999887654 446778999999999999999999999875443
Q ss_pred --HHHHHHHHHHHHHccCHHHHHHHHHHHH---HhCCCCH----HHHHHHHHHHHhhC
Q 007401 557 --VKAYLRRGTAREALFCYNEALQDFKHAM---VLEPQNK----AANLAEKRLRKLIG 605 (605)
Q Consensus 557 --~~~~~~la~~~~~~g~~~~A~~~~~~al---~~~p~~~----~~~~~~~~~~~~~g 605 (605)
..+++++|.+|..+|++++|+.+|++++ +..|++. .++..++.++..+|
T Consensus 153 ~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~ 210 (293)
T 2qfc_A 153 QNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDS 210 (293)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHh
Confidence 5699999999999999999999999999 5566653 56777777776543
No 189
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=98.74 E-value=1.2e-08 Score=106.23 Aligned_cols=120 Identities=17% Similarity=0.196 Sum_probs=89.8
Q ss_pred hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---
Q 007401 486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTS------ATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKN--- 556 (605)
Q Consensus 486 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~--- 556 (605)
+..+..+..+|..++..|+|++|+.+|++++++.++. ..++.++|.+|..+|++++|++.|++++++.++.
T Consensus 220 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 299 (411)
T 4a1s_A 220 GAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGER 299 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCH
Confidence 4566788888888888888888888888888776543 2377888888888888888888888888876643
Q ss_pred ---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHhhC
Q 007401 557 ---VKAYLRRGTAREALFCYNEALQDFKHAMVLEPQN------KAANLAEKRLRKLIG 605 (605)
Q Consensus 557 ---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~~~~~~~~~g 605 (605)
..+++.+|.++...|++++|+++|++++++.++. ..++..++.++..+|
T Consensus 300 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 357 (411)
T 4a1s_A 300 EVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIG 357 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhc
Confidence 5678888888888888888888888888775432 345666666665543
No 190
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.74 E-value=5.1e-08 Score=96.39 Aligned_cols=86 Identities=15% Similarity=0.106 Sum_probs=82.4
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 007401 520 GTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAANLAEKR 599 (605)
Q Consensus 520 p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~ 599 (605)
|+++..++.+|..++..|+|++|+..|+++++++|+++.+|+++|.+|..+|++++|++.|+++++++|++..++..++.
T Consensus 1 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 80 (281)
T 2c2l_A 1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 80 (281)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhC
Q 007401 600 LRKLIG 605 (605)
Q Consensus 600 ~~~~~g 605 (605)
++..+|
T Consensus 81 ~~~~~g 86 (281)
T 2c2l_A 81 CQLEME 86 (281)
T ss_dssp HHHHTT
T ss_pred HHHHcC
Confidence 887764
No 191
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=98.70 E-value=2.6e-08 Score=99.52 Aligned_cols=120 Identities=19% Similarity=0.216 Sum_probs=97.9
Q ss_pred hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---
Q 007401 486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTS------ATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKN--- 556 (605)
Q Consensus 486 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~--- 556 (605)
+..+..+..+|..++..|++++|+.+|++++++.+.. ..++.++|.++...|++++|++.+++++++.++.
T Consensus 180 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 259 (338)
T 3ro2_A 180 AAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDR 259 (338)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcch
Confidence 4567889999999999999999999999999875432 3488999999999999999999999999886654
Q ss_pred ---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHhhC
Q 007401 557 ---VKAYLRRGTAREALFCYNEALQDFKHAMVLEPQN------KAANLAEKRLRKLIG 605 (605)
Q Consensus 557 ---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~~~~~~~~~g 605 (605)
..+++.+|.++...|++++|+..+++++++.+.. ..++..++.++...|
T Consensus 260 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g 317 (338)
T 3ro2_A 260 AVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALG 317 (338)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcC
Confidence 6788999999999999999999999998875532 345666666665543
No 192
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=98.69 E-value=1.2e-07 Score=102.56 Aligned_cols=120 Identities=8% Similarity=-0.045 Sum_probs=103.1
Q ss_pred ChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 007401 485 SIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSA-TYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRR 563 (605)
Q Consensus 485 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 563 (605)
.|+....|..++..+.+.|++++|...|+++++..|+++ .+|.+++.++...+++++|.+.|++|++..|.+...+...
T Consensus 317 ~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~ 396 (530)
T 2ooe_A 317 LKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTA 396 (530)
T ss_dssp CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHH
T ss_pred CcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHH
Confidence 345688999999999999999999999999999999985 6899999999889999999999999999888877777776
Q ss_pred HHH-HHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhh
Q 007401 564 GTA-REALFCYNEALQDFKHAMVLEPQNKAANLAEKRLRKLI 604 (605)
Q Consensus 564 a~~-~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~ 604 (605)
+.+ +...|++++|.+.|+++++.+|++..++..++.++...
T Consensus 397 a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~ 438 (530)
T 2ooe_A 397 ALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHL 438 (530)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT
T ss_pred HHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhC
Confidence 655 44689999999999999999999888888887776544
No 193
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.68 E-value=6.6e-08 Score=82.22 Aligned_cols=85 Identities=14% Similarity=-0.014 Sum_probs=78.1
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC-------HHH
Q 007401 521 TSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQN-------KAA 593 (605)
Q Consensus 521 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~ 593 (605)
+.+..++.+|.+++..+++++|+..|+++++.+|+++.+++++|.++...|++++|+.+|++++++.|++ ..+
T Consensus 2 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 81 (131)
T 1elr_A 2 KQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKA 81 (131)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHH
Confidence 3467899999999999999999999999999999999999999999999999999999999999998877 888
Q ss_pred HHHHHHHHHhhC
Q 007401 594 NLAEKRLRKLIG 605 (605)
Q Consensus 594 ~~~~~~~~~~~g 605 (605)
+..++.++...|
T Consensus 82 ~~~la~~~~~~~ 93 (131)
T 1elr_A 82 YARIGNSYFKEE 93 (131)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHhc
Confidence 888888876654
No 194
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.66 E-value=4.6e-08 Score=95.46 Aligned_cols=116 Identities=13% Similarity=0.022 Sum_probs=100.6
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC--HHHHHHHHHH
Q 007401 489 SELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKN--VKAYLRRGTA 566 (605)
Q Consensus 489 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~la~~ 566 (605)
-+.+..++..+...|+|++|.+.|+..+...|++. .++.+|.++++.++|++|+..|+++.+...+. ..+++++|.+
T Consensus 102 ~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~a 180 (282)
T 4f3v_A 102 LAITMGFAACEAAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVA 180 (282)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHH
Confidence 45667789999999999999999999999999888 99999999999999999999999887764221 3589999999
Q ss_pred HHHccCHHHHHHHHHHHHHhC--CC-CHHHHHHHHHHHHhhC
Q 007401 567 REALFCYNEALQDFKHAMVLE--PQ-NKAANLAEKRLRKLIG 605 (605)
Q Consensus 567 ~~~~g~~~~A~~~~~~al~~~--p~-~~~~~~~~~~~~~~~g 605 (605)
+..+|++++|+.+|++++.-. |. ...++...+.++..+|
T Consensus 181 l~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lG 222 (282)
T 4f3v_A 181 AANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQG 222 (282)
T ss_dssp HHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHT
T ss_pred HHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcC
Confidence 999999999999999998544 54 5568888888887765
No 195
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.66 E-value=7.7e-08 Score=89.14 Aligned_cols=104 Identities=16% Similarity=0.162 Sum_probs=90.2
Q ss_pred ChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC--C
Q 007401 485 SIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKL---NGT----SATYYSNRAAAYLELGCFQQAEEDCSKTISLDK--K 555 (605)
Q Consensus 485 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~---~p~----~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p--~ 555 (605)
.+..+..+..+|..+...|++++|+.+|++++.+ .++ ...++.++|.++..+|++++|+..+++++++.+ .
T Consensus 62 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~ 141 (203)
T 3gw4_A 62 HTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQAD 141 (203)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcc
Confidence 4567889999999999999999999999999988 443 356789999999999999999999999997632 2
Q ss_pred C----HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Q 007401 556 N----VKAYLRRGTAREALFCYNEALQDFKHAMVLEP 588 (605)
Q Consensus 556 ~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 588 (605)
+ ..++.++|.++...|++++|..++++++++..
T Consensus 142 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 178 (203)
T 3gw4_A 142 DQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFA 178 (203)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 2 23578999999999999999999999998753
No 196
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=98.62 E-value=3.2e-07 Score=75.77 Aligned_cols=77 Identities=16% Similarity=0.098 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHH
Q 007401 489 SELLKEKGNAAFKGKQWNKAVNYYSEAIKLN-------GTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYL 561 (605)
Q Consensus 489 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 561 (605)
+..++.+|..+++.++|.+|+.+|++|++.. .....++..+|.+++++|++++|+..++++++++|++..+..
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~ 84 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANG 84 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHh
Confidence 5678899999999999999999999999863 345789999999999999999999999999999999999888
Q ss_pred HHHH
Q 007401 562 RRGT 565 (605)
Q Consensus 562 ~la~ 565 (605)
++..
T Consensus 85 n~~~ 88 (104)
T 2v5f_A 85 NLKY 88 (104)
T ss_dssp HHHH
T ss_pred hHHH
Confidence 8873
No 197
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.59 E-value=5.8e-07 Score=78.43 Aligned_cols=98 Identities=19% Similarity=0.106 Sum_probs=88.3
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-
Q 007401 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLE----LGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREA- 569 (605)
Q Consensus 495 ~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~- 569 (605)
+|..|...+.+++|+++|+++.+. .++.+++++|.+|.. .+++++|+++|+++.+. .++.+++++|.+|..
T Consensus 31 lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G 106 (138)
T 1klx_A 31 LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAG 106 (138)
T ss_dssp HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHCC
Confidence 899999999999999999999987 789999999999999 89999999999999987 689999999999999
Q ss_pred ---ccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 007401 570 ---LFCYNEALQDFKHAMVLEPQNKAANLAEK 598 (605)
Q Consensus 570 ---~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 598 (605)
.+++++|+++|+++.+. .+..+...++
T Consensus 107 ~g~~~d~~~A~~~~~~Aa~~--g~~~A~~~l~ 136 (138)
T 1klx_A 107 KGVVKNEKQAVKTFEKACRL--GSEDACGILN 136 (138)
T ss_dssp SSSCCCHHHHHHHHHHHHHT--TCHHHHHHC-
T ss_pred CCCCcCHHHHHHHHHHHHHC--CCHHHHHHHh
Confidence 99999999999999987 4555555443
No 198
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=98.59 E-value=3.1e-07 Score=94.26 Aligned_cols=102 Identities=11% Similarity=-0.004 Sum_probs=70.2
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--------
Q 007401 488 ASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTS------ATYYSNRAAAYLELGCFQQAEEDCSKTISLD-------- 553 (605)
Q Consensus 488 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-------- 553 (605)
.+..+..+|..++..|++++|+..|++++.+.+.. ..++.++|.++...|++++|++.+++++++.
T Consensus 52 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~ 131 (373)
T 1hz4_A 52 RIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQL 131 (373)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTS
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccC
Confidence 44566777777777777777777777777654432 2345677777777777777777777777654
Q ss_pred CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Q 007401 554 KKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQ 589 (605)
Q Consensus 554 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 589 (605)
|....++.++|.++...|++++|...+++++++.+.
T Consensus 132 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 167 (373)
T 1hz4_A 132 PMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSS 167 (373)
T ss_dssp THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTT
T ss_pred cHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhc
Confidence 223456666777777777777777777777777654
No 199
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=98.58 E-value=5.9e-07 Score=90.35 Aligned_cols=105 Identities=16% Similarity=0.089 Sum_probs=86.3
Q ss_pred HHHHHHHHHHHHHHCCC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHH-------------------------------
Q 007401 488 ASELLKEKGNAAFKGKQ---WNKAVNYYSEAIKLNGTSATYYSNRAAAY------------------------------- 533 (605)
Q Consensus 488 ~a~~~~~~g~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~la~~~------------------------------- 533 (605)
.+-.++.+|..++..++ +.+|+.+|+++++++|+++.++..++.+|
T Consensus 195 ~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~~~ 274 (372)
T 3ly7_A 195 ALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELN 274 (372)
T ss_dssp GGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcccCC
Confidence 35566677888877654 58999999999999999988877655544
Q ss_pred -------------HHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHH
Q 007401 534 -------------LELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAA 593 (605)
Q Consensus 534 -------------~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 593 (605)
...|++++|+..+++|+.++| ++.+|..+|.++...|++++|++.|++|+.++|..+..
T Consensus 275 ~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~-s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~t~ 346 (372)
T 3ly7_A 275 NLSIIYQIKAVSALVKGKTDESYQAINTGIDLEM-SWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGANTL 346 (372)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHHHH
T ss_pred cCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcChH
Confidence 236889999999999999986 57788889999999999999999999999999977643
No 200
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.54 E-value=1e-06 Score=93.75 Aligned_cols=107 Identities=15% Similarity=0.095 Sum_probs=89.3
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCC
Q 007401 489 SELLKEKGNAAFKGKQWNKAVNYYSEAIKL-----NGTS---ATYYSNRAAAYLELGCFQQAEEDCSKTISL-----DKK 555 (605)
Q Consensus 489 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~-----~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~-----~p~ 555 (605)
+....+.+..+..+|+|++|+..|++++++ .+++ ...+.++|.+|..+|+|++|+..+++++++ .|+
T Consensus 309 a~~~le~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~ 388 (490)
T 3n71_A 309 SKDTLEKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHN 388 (490)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTT
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCC
Confidence 344555667788899999999999999985 3444 678899999999999999999999999876 456
Q ss_pred CH---HHHHHHHHHHHHccCHHHHHHHHHHHHHh-----CCCCHHHHH
Q 007401 556 NV---KAYLRRGTAREALFCYNEALQDFKHAMVL-----EPQNKAANL 595 (605)
Q Consensus 556 ~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~ 595 (605)
++ ..++++|.+|..+|+|++|+..|++++++ .|+++....
T Consensus 389 Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~ 436 (490)
T 3n71_A 389 NAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKD 436 (490)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHH
T ss_pred CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHH
Confidence 65 48999999999999999999999999976 467765544
No 201
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=98.53 E-value=4.7e-07 Score=97.94 Aligned_cols=113 Identities=12% Similarity=0.053 Sum_probs=101.7
Q ss_pred hHHHHHHHHHHHHHHH-------CCCHH-------HHHHHHHHHHH-hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 007401 486 IDASELLKEKGNAAFK-------GKQWN-------KAVNYYSEAIK-LNGTSATYYSNRAAAYLELGCFQQAEEDCSKTI 550 (605)
Q Consensus 486 ~~~a~~~~~~g~~~~~-------~g~~~-------~A~~~~~~al~-~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al 550 (605)
|.....|+.+|..+.+ .|+++ +|+..|+++++ ..|++..+|..++..+...|++++|.+.|++++
T Consensus 269 p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al 348 (530)
T 2ooe_A 269 GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLL 348 (530)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Confidence 4557899999999986 79987 99999999997 899999999999999999999999999999999
Q ss_pred hcCCCCH-HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 007401 551 SLDKKNV-KAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAANLAEK 598 (605)
Q Consensus 551 ~~~p~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 598 (605)
+++|.++ .+|..++..+.+.|++++|.+.|+++++..|.+...+...+
T Consensus 349 ~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a 397 (530)
T 2ooe_A 349 AIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAA 397 (530)
T ss_dssp HSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHH
T ss_pred CccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHH
Confidence 9999986 69999999999999999999999999999887655544433
No 202
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=98.51 E-value=1.1e-06 Score=72.39 Aligned_cols=80 Identities=15% Similarity=-0.019 Sum_probs=71.0
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-------CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHH
Q 007401 522 SATYYSNRAAAYLELGCFQQAEEDCSKTISLD-------KKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAAN 594 (605)
Q Consensus 522 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 594 (605)
++.-++.+|..+++.++|.+|+..|++|++.. .....++.++|.+++++|++++|+..++++++++|++..+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~ 83 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRAN 83 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHH
Confidence 46678899999999999999999999999863 34578999999999999999999999999999999999887
Q ss_pred HHHHHHH
Q 007401 595 LAEKRLR 601 (605)
Q Consensus 595 ~~~~~~~ 601 (605)
.....+.
T Consensus 84 ~n~~~~~ 90 (104)
T 2v5f_A 84 GNLKYFE 90 (104)
T ss_dssp HHHHHHH
T ss_pred hhHHHHH
Confidence 7766443
No 203
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=98.48 E-value=1.5e-06 Score=90.78 Aligned_cols=106 Identities=10% Similarity=0.029 Sum_probs=87.1
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHh-----CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCCCH---H
Q 007401 495 KGNAAFKGKQWNKAVNYYSEAIKL-----NGTS---ATYYSNRAAAYLELGCFQQAEEDCSKTISL-----DKKNV---K 558 (605)
Q Consensus 495 ~g~~~~~~g~~~~A~~~~~~al~~-----~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~-----~p~~~---~ 558 (605)
........|+|++|+..|++++++ .|++ ...+.++|.+|..+|+|++|+..+++++++ .|+++ .
T Consensus 304 ~~~~~~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~ 383 (433)
T 3qww_A 304 EFRRAKHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVAS 383 (433)
T ss_dssp HHHHHTTTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHH
T ss_pred HHHHhhhccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHH
Confidence 344444578999999999999985 3454 567899999999999999999999999976 45565 4
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHH
Q 007401 559 AYLRRGTAREALFCYNEALQDFKHAMVL-----EPQNKAANLAEKRL 600 (605)
Q Consensus 559 ~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~~~~~~ 600 (605)
.++++|.+|..+|+|++|+..|++++++ .|+++........+
T Consensus 384 ~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~l~~~l 430 (433)
T 3qww_A 384 MWLKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYISEIKQEI 430 (433)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHH
Confidence 8999999999999999999999999976 47777766655443
No 204
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.43 E-value=8.4e-07 Score=71.45 Aligned_cols=72 Identities=14% Similarity=0.058 Sum_probs=66.4
Q ss_pred ChHHHHHHHHHHHHHHHCCC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 007401 485 SIDASELLKEKGNAAFKGKQ---WNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKN 556 (605)
Q Consensus 485 ~~~~a~~~~~~g~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~ 556 (605)
.+++++.+..+|..++..++ .++|...++++++++|++..+++.+|..+++.|+|++|+..|+++++.+|.+
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~ 76 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPN 76 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTT
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 35668899999999987666 7999999999999999999999999999999999999999999999999984
No 205
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=98.40 E-value=9.2e-07 Score=90.67 Aligned_cols=118 Identities=10% Similarity=-0.063 Sum_probs=97.0
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC--H--
Q 007401 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSA-----TYYSNRAAAYLELGCFQQAEEDCSKTISLDKKN--V-- 557 (605)
Q Consensus 487 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~-----~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~--~-- 557 (605)
.....+..+|..++..|++++|+..+++++...|.+. .++..+|.++...|++++|.+.+++++++.+.. .
T Consensus 12 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 91 (373)
T 1hz4_A 12 MHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHY 91 (373)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHH
Confidence 3467788899999999999999999999999877552 367899999999999999999999999876533 2
Q ss_pred --HHHHHHHHHHHHccCHHHHHHHHHHHHHhCC--------CCHHHHHHHHHHHHhh
Q 007401 558 --KAYLRRGTAREALFCYNEALQDFKHAMVLEP--------QNKAANLAEKRLRKLI 604 (605)
Q Consensus 558 --~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--------~~~~~~~~~~~~~~~~ 604 (605)
.+++++|.++...|++++|+..+++++++.+ .....+..++.++...
T Consensus 92 ~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~ 148 (373)
T 1hz4_A 92 ALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAW 148 (373)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHh
Confidence 3578899999999999999999999998752 2344556666665544
No 206
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=98.37 E-value=6.7e-06 Score=87.88 Aligned_cols=143 Identities=13% Similarity=-0.029 Sum_probs=111.5
Q ss_pred ccCCchhHHhHHHHHHh------HHHHHHhhhccCCCCCCCCCChHHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHH
Q 007401 448 YHGGDKFLLDTVLDLYD------SLQEQVNIASNLVPLPDTNGSIDASELLKEKGNAAFK----GKQWNKAVNYYSEAIK 517 (605)
Q Consensus 448 ~~~~d~~ll~~a~~l~~------~~~e~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~~----~g~~~~A~~~~~~al~ 517 (605)
..++......++..+.. ...++.....+... ...+..++.+|..|.. .+++++|+++|+++++
T Consensus 35 ~~g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~-------~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~ 107 (490)
T 2xm6_A 35 ESGEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAE-------QGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAAL 107 (490)
T ss_dssp HTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH-------TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHH-------CCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Confidence 34455555555555433 23444444433321 1356788899999999 9999999999999987
Q ss_pred hCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHhCCC
Q 007401 518 LNGTSATYYSNRAAAYLE----LGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREA----LFCYNEALQDFKHAMVLEPQ 589 (605)
Q Consensus 518 ~~p~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~ 589 (605)
. .++.+++++|.+|.. .+++++|++.|+++.+. +++.+++++|.+|.. .+++++|+++|+++.+. +
T Consensus 108 ~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~--~ 181 (490)
T 2xm6_A 108 K--GLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ--GRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ--G 181 (490)
T ss_dssp T--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--T
T ss_pred C--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--C
Confidence 5 588999999999998 88999999999998876 579999999999988 88999999999999886 5
Q ss_pred CHHHHHHHHHHHHh
Q 007401 590 NKAANLAEKRLRKL 603 (605)
Q Consensus 590 ~~~~~~~~~~~~~~ 603 (605)
+..++..++.++..
T Consensus 182 ~~~a~~~Lg~~y~~ 195 (490)
T 2xm6_A 182 NVWSCNQLGYMYSR 195 (490)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhc
Confidence 78888888887754
No 207
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=98.35 E-value=3.1e-06 Score=88.60 Aligned_cols=109 Identities=10% Similarity=0.080 Sum_probs=90.4
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCC
Q 007401 489 SELLKEKGNAAFKGKQWNKAVNYYSEAIKL-----NGTS---ATYYSNRAAAYLELGCFQQAEEDCSKTISL-----DKK 555 (605)
Q Consensus 489 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~-----~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~-----~p~ 555 (605)
.+.....-..+.++|+|++|++.|+++++. .|++ ...+.++|.+|..+|+|++|+..+++++++ .|+
T Consensus 287 ~~~ll~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~ 366 (429)
T 3qwp_A 287 VQESLKKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGS 366 (429)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSS
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCC
Confidence 455556666778899999999999999975 3444 567899999999999999999999999876 355
Q ss_pred CHH---HHHHHHHHHHHccCHHHHHHHHHHHHHh-----CCCCHHHHHHH
Q 007401 556 NVK---AYLRRGTAREALFCYNEALQDFKHAMVL-----EPQNKAANLAE 597 (605)
Q Consensus 556 ~~~---~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~~~ 597 (605)
++. .++++|.+|..+|++++|+..|++++++ .|+++.....+
T Consensus 367 Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~ 416 (429)
T 3qwp_A 367 HPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLI 416 (429)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHH
Confidence 654 8999999999999999999999999976 47776655443
No 208
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=98.35 E-value=2.7e-06 Score=90.05 Aligned_cols=107 Identities=10% Similarity=-0.018 Sum_probs=70.0
Q ss_pred HHHHHHHHHHHCC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 007401 491 LLKEKGNAAFKGK---QWNKAVNYYSEAIKLNGTSATYYSNRAAAYLEL----GCFQQAEEDCSKTISLDKKNVKAYLRR 563 (605)
Q Consensus 491 ~~~~~g~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~----~~~~~A~~~~~~al~~~p~~~~~~~~l 563 (605)
.++.+|..+.+.| ++++|+++|+++++..+.++..++++|.+|... +++++|+++|+++. |+++.+++++
T Consensus 178 a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~~~a~~~L 254 (452)
T 3e4b_A 178 CYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA---PGYPASWVSL 254 (452)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGSTHHHHHH
T ss_pred HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCCHHHHHHH
Confidence 5666677777777 677777777777777666666666677666544 56667777776665 6666666666
Q ss_pred HHH-H--HHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 007401 564 GTA-R--EALFCYNEALQDFKHAMVLEPQNKAANLAEKRLRK 602 (605)
Q Consensus 564 a~~-~--~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 602 (605)
|.+ + ...+++++|+++|+++.+. ++..++..++.++.
T Consensus 255 g~~~~~~~~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~ 294 (452)
T 3e4b_A 255 AQLLYDFPELGDVEQMMKYLDNGRAA--DQPRAELLLGKLYY 294 (452)
T ss_dssp HHHHHHSGGGCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHH
T ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHH
Confidence 666 3 3566666666666666643 35666666666554
No 209
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=98.33 E-value=1e-05 Score=86.48 Aligned_cols=111 Identities=14% Similarity=0.048 Sum_probs=99.8
Q ss_pred HHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCCHH
Q 007401 487 DASELLKEKGNAAFK----GKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLE----LGCFQQAEEDCSKTISLDKKNVK 558 (605)
Q Consensus 487 ~~a~~~~~~g~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~~~p~~~~ 558 (605)
.....++.+|..+.. .+++++|+.+|+++++. .++.+++++|.+|.. .+++++|++.|+++++. +++.
T Consensus 109 ~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~--~~~~ 184 (490)
T 2xm6_A 109 GLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ--GRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ--GNVW 184 (490)
T ss_dssp TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHH
T ss_pred CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHH
Confidence 356788999999999 89999999999999875 689999999999998 88999999999999987 5899
Q ss_pred HHHHHHHHHHH----ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 007401 559 AYLRRGTAREA----LFCYNEALQDFKHAMVLEPQNKAANLAEKRLRKL 603 (605)
Q Consensus 559 ~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~ 603 (605)
+++++|.+|.. .+++++|+++|+++.+. ++..++..++.++..
T Consensus 185 a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~ 231 (490)
T 2xm6_A 185 SCNQLGYMYSRGLGVERNDAISAQWYRKSATS--GDELGQLHLADMYYF 231 (490)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHc
Confidence 99999999999 99999999999999985 578888888887753
No 210
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=98.33 E-value=6.2e-06 Score=69.27 Aligned_cols=102 Identities=15% Similarity=0.054 Sum_probs=87.7
Q ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH---HHHHHHHHHhcC-C-CCHHHHHHHHHHHHHccCHHHH
Q 007401 502 GKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQ---AEEDCSKTISLD-K-KNVKAYLRRGTAREALFCYNEA 576 (605)
Q Consensus 502 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~---A~~~~~~al~~~-p-~~~~~~~~la~~~~~~g~~~~A 576 (605)
......+.+.|++.+..++.+....+++|+++....+... ++..++..++.+ | ..-+.+|++|..++++|+|++|
T Consensus 14 ~~~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A 93 (126)
T 1nzn_A 14 VEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKA 93 (126)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHH
Confidence 3455667778888888888999999999999998876555 999999988877 5 5668999999999999999999
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 007401 577 LQDFKHAMVLEPQNKAANLAEKRLRKL 603 (605)
Q Consensus 577 ~~~~~~al~~~p~~~~~~~~~~~~~~~ 603 (605)
..+++..|+++|+|.++......+..+
T Consensus 94 ~~~~~~lL~~eP~n~QA~~Lk~~i~~~ 120 (126)
T 1nzn_A 94 LKYVRGLLQTEPQNNQAKELERLIDKA 120 (126)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 999999999999999998887777654
No 211
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.32 E-value=1.2e-06 Score=93.20 Aligned_cols=109 Identities=8% Similarity=0.020 Sum_probs=93.6
Q ss_pred CCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-
Q 007401 482 TNGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKL-----NGTS---ATYYSNRAAAYLELGCFQQAEEDCSKTISL- 552 (605)
Q Consensus 482 ~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~-----~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~- 552 (605)
-+..+..+..+.++|..|..+|+|++|+.+|++++.+ .+++ +..++++|.+|..+|+|++|+..|++|+++
T Consensus 344 g~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~ 423 (490)
T 3n71_A 344 ADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAIL 423 (490)
T ss_dssp CTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 3567888999999999999999999999999999975 3444 667899999999999999999999999976
Q ss_pred ----CCCCHH---HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC
Q 007401 553 ----DKKNVK---AYLRRGTAREALFCYNEALQDFKHAMVLEPQN 590 (605)
Q Consensus 553 ----~p~~~~---~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 590 (605)
.|+++. ...+++.++..++.|++|...|+++.+..-+|
T Consensus 424 ~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~~~~ 468 (490)
T 3n71_A 424 LVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAALNN 468 (490)
T ss_dssp HHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 466654 66789999999999999999999987654333
No 212
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.29 E-value=4.8e-06 Score=72.45 Aligned_cols=93 Identities=20% Similarity=0.070 Sum_probs=83.2
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----ccCHHHHHH
Q 007401 503 KQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREA----LFCYNEALQ 578 (605)
Q Consensus 503 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~ 578 (605)
+++++|+++|+++.+.....+. +|.+|.....+++|+++|+++.+. .++.+++++|.+|.. .+++++|++
T Consensus 9 ~d~~~A~~~~~~aa~~g~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~ 82 (138)
T 1klx_A 9 KDLKKAIQYYVKACELNEMFGC----LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQ 82 (138)
T ss_dssp HHHHHHHHHHHHHHHTTCTTHH----HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHH
T ss_pred cCHHHHHHHHHHHHcCCCHhhh----HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHHH
Confidence 4789999999999998755444 999999999999999999999987 689999999999999 999999999
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHh
Q 007401 579 DFKHAMVLEPQNKAANLAEKRLRKL 603 (605)
Q Consensus 579 ~~~~al~~~p~~~~~~~~~~~~~~~ 603 (605)
+|+++.+. +++.+...++.++..
T Consensus 83 ~~~~Aa~~--g~~~a~~~Lg~~y~~ 105 (138)
T 1klx_A 83 YYSKACGL--NDQDGCLILGYKQYA 105 (138)
T ss_dssp HHHHHHHT--TCHHHHHHHHHHHHH
T ss_pred HHHHHHcC--CCHHHHHHHHHHHHC
Confidence 99999986 689999999888764
No 213
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=98.24 E-value=3.3e-06 Score=73.68 Aligned_cols=81 Identities=12% Similarity=0.037 Sum_probs=73.0
Q ss_pred HHHHHHHHHHHHHHHCC---CHHHHHHHHHHHHHhC-C-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHH
Q 007401 487 DASELLKEKGNAAFKGK---QWNKAVNYYSEAIKLN-G-TSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYL 561 (605)
Q Consensus 487 ~~a~~~~~~g~~~~~~g---~~~~A~~~~~~al~~~-p-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 561 (605)
...+..+++|+++.+.+ +.++++..++++++.+ | ++.+++|++|..|+++++|++|.++++++++++|+|.++..
T Consensus 30 ~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP~n~QA~~ 109 (152)
T 1pc2_A 30 VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKE 109 (152)
T ss_dssp CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHH
Confidence 34788999999999988 7779999999999998 7 56899999999999999999999999999999999999887
Q ss_pred HHHHHH
Q 007401 562 RRGTAR 567 (605)
Q Consensus 562 ~la~~~ 567 (605)
.+-.+-
T Consensus 110 Lk~~ie 115 (152)
T 1pc2_A 110 LERLID 115 (152)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 765554
No 214
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=98.24 E-value=3.7e-06 Score=88.96 Aligned_cols=109 Identities=14% Similarity=0.037 Sum_probs=67.4
Q ss_pred hHHHHHHHHHHHH-H--HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHhcCCCCH
Q 007401 486 IDASELLKEKGNA-A--FKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELG-----CFQQAEEDCSKTISLDKKNV 557 (605)
Q Consensus 486 ~~~a~~~~~~g~~-~--~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~-----~~~~A~~~~~~al~~~p~~~ 557 (605)
+.....++++|.. + ...+++++|+.+|+++++. .++.+++++|.+|. .| ++++|+++|+++. +.++
T Consensus 245 ~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa---~g~~ 318 (452)
T 3e4b_A 245 PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA--DQPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV---GREV 318 (452)
T ss_dssp GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT---TTCH
T ss_pred CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh---CCCH
Confidence 3445556666666 3 3466677777777766643 36666667776665 33 6677777776666 6666
Q ss_pred HHHHHHHHHHHH----ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 007401 558 KAYLRRGTAREA----LFCYNEALQDFKHAMVLEPQNKAANLAEKRLRK 602 (605)
Q Consensus 558 ~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 602 (605)
.+++++|.+|.. ..++++|..+|+++.+ .++..+...++.++.
T Consensus 319 ~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~ 365 (452)
T 3e4b_A 319 AADYYLGQIYRRGYLGKVYPQKALDHLLTAAR--NGQNSADFAIAQLFS 365 (452)
T ss_dssp HHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHT--TTCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHh--hChHHHHHHHHHHHH
Confidence 677777766655 3366777777776655 345555666665543
No 215
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=98.12 E-value=6.8e-06 Score=79.30 Aligned_cols=85 Identities=13% Similarity=0.095 Sum_probs=78.8
Q ss_pred HHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHH-ccCHHH
Q 007401 505 WNKAVNYYSEAIKLNGT--SATYYSNRAAAYLEL-----GCFQQAEEDCSKTISLDKKN-VKAYLRRGTAREA-LFCYNE 575 (605)
Q Consensus 505 ~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~-----~~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~-~g~~~~ 575 (605)
..+|...++++++++|+ +..+|..+|..|.+. |+.++|.++|++|++++|+. ...++.+|..+.. .|++++
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~ 258 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG 258 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence 57899999999999999 677999999999995 99999999999999999975 9999999999988 599999
Q ss_pred HHHHHHHHHHhCCC
Q 007401 576 ALQDFKHAMVLEPQ 589 (605)
Q Consensus 576 A~~~~~~al~~~p~ 589 (605)
|...++++++.+|.
T Consensus 259 a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 259 FDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHHCCGG
T ss_pred HHHHHHHHHcCCCC
Confidence 99999999998776
No 216
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.08 E-value=2.6e-05 Score=76.99 Aligned_cols=97 Identities=9% Similarity=-0.068 Sum_probs=55.2
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC------CHHHHHHHH
Q 007401 493 KEKGNAAFKGKQWNKAVNYYSEAIKLNG--TSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKK------NVKAYLRRG 564 (605)
Q Consensus 493 ~~~g~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~la 564 (605)
..+|.++...|++++|++.+.+.+..+| ++.+++..++++++++|+.+.|.+.+++..+.+|+ .....+.-+
T Consensus 104 ~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~~~d~~l~~Laea 183 (310)
T 3mv2_B 104 YLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTVSGDNEMILNLAES 183 (310)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccccccchHHHHHHHHH
Confidence 4556666666666666666666666554 55666666666666666666666666666666552 122222223
Q ss_pred HHHHHcc--CHHHHHHHHHHHHHhCCC
Q 007401 565 TAREALF--CYNEALQDFKHAMVLEPQ 589 (605)
Q Consensus 565 ~~~~~~g--~~~~A~~~~~~al~~~p~ 589 (605)
++....| ++++|...|+++.+..|+
T Consensus 184 ~v~l~~g~~~~q~A~~~f~El~~~~p~ 210 (310)
T 3mv2_B 184 YIKFATNKETATSNFYYYEELSQTFPT 210 (310)
T ss_dssp HHHHHHTCSTTTHHHHHHHHHHTTSCS
T ss_pred HHHHHhCCccHHHHHHHHHHHHHhCCC
Confidence 3344444 566666666666555554
No 217
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.05 E-value=5e-05 Score=74.92 Aligned_cols=143 Identities=9% Similarity=-0.066 Sum_probs=102.9
Q ss_pred HhHHHHHHhHHHHHHhhhccCCCCCCCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC----CHHHHHHH--
Q 007401 456 LDTVLDLYDSLQEQVNIASNLVPLPDTNGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGT----SATYYSNR-- 529 (605)
Q Consensus 456 l~~a~~l~~~~~e~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~l-- 529 (605)
+..+........++.......... .+ .....+.+...+.++.++|+.+.|.+.+++..+.+|+ +-.....+
T Consensus 106 la~i~~~~g~~eeAL~~l~~~i~~--~~-~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~~~d~~l~~Lae 182 (310)
T 3mv2_B 106 LATAQAILGDLDKSLETCVEGIDN--DE-AEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTVSGDNEMILNLAE 182 (310)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHTS--SC-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHhcc--CC-CcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccccccchHHHHHHHH
Confidence 333344444455555555433111 11 1367888999999999999999999999999999883 22334444
Q ss_pred HHHHHHcC--CHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHccCHHHHHHHHHHHHHh----------CCCCHHHHH
Q 007401 530 AAAYLELG--CFQQAEEDCSKTISLDKK--NVKAYLRRGTAREALFCYNEALQDFKHAMVL----------EPQNKAANL 595 (605)
Q Consensus 530 a~~~~~~~--~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~----------~p~~~~~~~ 595 (605)
+++.+..| ++++|...|+++....|+ ....+++ ++.++|++++|.+.++++++. +|+|+.++.
T Consensus 183 a~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln---~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~La 259 (310)
T 3mv2_B 183 SYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLN---LHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLA 259 (310)
T ss_dssp HHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHH---HHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHH
T ss_pred HHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHH---HHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHH
Confidence 55566666 899999999999888886 3445555 899999999999999988876 488999887
Q ss_pred HHHHHHHhh
Q 007401 596 AEKRLRKLI 604 (605)
Q Consensus 596 ~~~~~~~~~ 604 (605)
++..+...+
T Consensus 260 N~i~l~~~l 268 (310)
T 3mv2_B 260 NQITLALMQ 268 (310)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHh
Confidence 775555443
No 218
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=97.96 E-value=3.2e-05 Score=67.79 Aligned_cols=113 Identities=9% Similarity=0.020 Sum_probs=87.2
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC---------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---CCC
Q 007401 489 SELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTS---------ATYYSNRAAAYLELGCFQQAEEDCSKTISLD---KKN 556 (605)
Q Consensus 489 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~---p~~ 556 (605)
...++.....++..+.|+.|+-.++.++.+..++ ..+++.+|+.++..++|.+|...|++|+++. +++
T Consensus 20 ~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~ 99 (167)
T 3ffl_A 20 HMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKT 99 (167)
T ss_dssp -CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC---
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcC
Confidence 3457778888999999999999999987764333 3488999999999999999999999987652 111
Q ss_pred ----------------------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 007401 557 ----------------------VKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAANLAEKRLRK 602 (605)
Q Consensus 557 ----------------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 602 (605)
.+..|.++.||.+++++++|+..++..-. .-..+.....+++++.
T Consensus 100 ~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~-k~Rt~kvnm~LakLy~ 166 (167)
T 3ffl_A 100 SKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPS-RQRTPKINMLLANLYK 166 (167)
T ss_dssp -----------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCG-GGCCHHHHHHHHHHCC
T ss_pred CCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCc-hhcCHHHHHHHHHHhc
Confidence 26889999999999999999999875322 2345777777776653
No 219
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=97.96 E-value=0.00012 Score=84.86 Aligned_cols=92 Identities=12% Similarity=0.111 Sum_probs=74.4
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-----------
Q 007401 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKK----------- 555 (605)
Q Consensus 487 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~----------- 555 (605)
+....|+++|..+.+.|++++|++.|.++ +++..|...+.++.++|+|++|+++|..|.+.+++
T Consensus 1103 n~p~vWsqLAKAql~~G~~kEAIdsYiKA-----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaY 1177 (1630)
T 1xi4_A 1103 NEPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFAL 1177 (1630)
T ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHH
Confidence 45788999999999999999999999886 88999999999999999999999999888766533
Q ss_pred ----------------CHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 007401 556 ----------------NVKAYLRRGTAREALFCYNEALQDFKHA 583 (605)
Q Consensus 556 ----------------~~~~~~~la~~~~~~g~~~~A~~~~~~a 583 (605)
+...++++|..++..|+|++|..+|+++
T Consensus 1178 AKl~rleele~fI~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA 1221 (1630)
T 1xi4_A 1178 AKTNRLAELEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV 1221 (1630)
T ss_pred HhhcCHHHHHHHHhCCCHHHHHHHHHHHHhcCCHHHHHHHHHhh
Confidence 1234556777777777777777777664
No 220
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=97.91 E-value=5.5e-05 Score=87.49 Aligned_cols=106 Identities=15% Similarity=0.165 Sum_probs=90.2
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC---------------
Q 007401 490 ELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDK--------------- 554 (605)
Q Consensus 490 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p--------------- 554 (605)
..|...|+.++..|+|++|+.+|+++ ..|..++.+|.++|+|++|++.+++|...++
T Consensus 1196 ad~~~iGd~le~eg~YeeA~~~Y~kA--------~ny~rLA~tLvkLge~q~AIEaarKA~n~~aWkev~~acve~~Ef~ 1267 (1630)
T 1xi4_A 1196 AHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFR 1267 (1630)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhh--------hHHHHHHHHHHHhCCHHHHHHHHHHhCCHHHHHHHHHHHhhhhHHH
Confidence 45668999999999999999999996 5889999999999999999999999854443
Q ss_pred ----------CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 007401 555 ----------KNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAANLAEKRLRKL 603 (605)
Q Consensus 555 ----------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~ 603 (605)
.+++.+..++..|...|.|++|+..+++++.+++.+...+..++.++.+
T Consensus 1268 LA~~cgl~Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaK 1326 (1630)
T 1xi4_A 1268 LAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSK 1326 (1630)
T ss_pred HHHHHHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHh
Confidence 2445566778889999999999999999999999988888777776654
No 221
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=97.82 E-value=0.00014 Score=75.06 Aligned_cols=105 Identities=12% Similarity=0.011 Sum_probs=90.9
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 007401 490 ELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREA 569 (605)
Q Consensus 490 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 569 (605)
..|..+|.++.+.|+|++|++.|+++ +++..|.....++...|+++.|..+..+ +.. +++-...+..+|.+
T Consensus 149 ~n~~~LA~~L~~Lg~yq~AVea~~KA-----~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-L~~---~ad~l~~lv~~Yek 219 (449)
T 1b89_A 149 SNFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVDGKEFRLAQMCGLH-IVV---HADELEELINYYQD 219 (449)
T ss_dssp TCHHHHHHHHHTTTCHHHHHHHHHHH-----TCHHHHHHHHHHHHHTTCHHHHHHTTTT-TTT---CHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHhccHHHHHHHHHHc-----CCchhHHHHHHHHHHcCcHHHHHHHHHH-HHh---CHhhHHHHHHHHHH
Confidence 46889999999999999999999999 4789999999999999999999877765 334 44445568889999
Q ss_pred ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 007401 570 LFCYNEALQDFKHAMVLEPQNKAANLAEKRLRKL 603 (605)
Q Consensus 570 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~ 603 (605)
.|++++|+..+++++.+++.+...+..++.++.+
T Consensus 220 ~G~~eEai~lLe~aL~le~ah~~~ftel~il~~k 253 (449)
T 1b89_A 220 RGYFEELITMLEAALGLERAHMGMFTELAILYSK 253 (449)
T ss_dssp TTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999988888877654
No 222
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=97.80 E-value=0.00053 Score=58.41 Aligned_cols=84 Identities=10% Similarity=-0.082 Sum_probs=71.2
Q ss_pred CCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHH
Q 007401 520 GTSATYYSNRAAAYLELGC---FQQAEEDCSKTISLDKK-NVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAANL 595 (605)
Q Consensus 520 p~~~~~~~~la~~~~~~~~---~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 595 (605)
.-+....+++|+++....+ ..+++..++..++.+|. .-+.+|++|..++++|+|++|..+.+..|+++|+|.++..
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~ 115 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA 115 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHH
Confidence 4568889999999988775 56789999999988884 5578999999999999999999999999999999998888
Q ss_pred HHHHHHHh
Q 007401 596 AEKRLRKL 603 (605)
Q Consensus 596 ~~~~~~~~ 603 (605)
....+..+
T Consensus 116 Lk~~Ie~~ 123 (144)
T 1y8m_A 116 LKSMVEDK 123 (144)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77766554
No 223
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=97.74 E-value=0.00031 Score=59.07 Aligned_cols=83 Identities=10% Similarity=-0.079 Sum_probs=63.4
Q ss_pred CCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHH
Q 007401 521 TSATYYSNRAAAYLELGC---FQQAEEDCSKTISLDKK-NVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAANLA 596 (605)
Q Consensus 521 ~~~~~~~~la~~~~~~~~---~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 596 (605)
-.+...+++|+++.+..+ ..+++..++..++.+|. ..+.+|.+|..++++|+|++|..+.+.+|+++|+|.++...
T Consensus 38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~L 117 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGAL 117 (134)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHH
T ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHH
Confidence 356778888888877664 45678888888877774 45688888888888888888888888888888888887777
Q ss_pred HHHHHHh
Q 007401 597 EKRLRKL 603 (605)
Q Consensus 597 ~~~~~~~ 603 (605)
...+..+
T Consensus 118 k~~Ie~k 124 (134)
T 3o48_A 118 KSMVEDK 124 (134)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6666544
No 224
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.72 E-value=0.0001 Score=76.76 Aligned_cols=100 Identities=7% Similarity=-0.044 Sum_probs=75.2
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc------CCCCH
Q 007401 490 ELLKEKGNAAFKGKQWNKAVNYYSEAIKLNG------TSATYYSNRAAAYLELGCFQQAEEDCSKTISL------DKKNV 557 (605)
Q Consensus 490 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~------~p~~~ 557 (605)
.....++..+...|++++|+.+|++++...+ ....++.++|.+|...|+|.+|+..+++++.. .+...
T Consensus 96 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~ 175 (434)
T 4b4t_Q 96 VLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLV 175 (434)
T ss_dssp HHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHH
Confidence 3445566666667777777777777766432 22667888899999999999999988888765 22335
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Q 007401 558 KAYLRRGTAREALFCYNEALQDFKHAMVLEPQ 589 (605)
Q Consensus 558 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 589 (605)
.++..++.+|..+|++++|...+++++.+.+.
T Consensus 176 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~ 207 (434)
T 4b4t_Q 176 DVHLLESKVYHKLRNLAKSKASLTAARTAANS 207 (434)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhc
Confidence 68888899999999999999999999888643
No 225
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.65 E-value=5.9e-05 Score=78.61 Aligned_cols=96 Identities=10% Similarity=0.010 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC------CCH
Q 007401 490 ELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTS------ATYYSNRAAAYLELGCFQQAEEDCSKTISLDK------KNV 557 (605)
Q Consensus 490 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p------~~~ 557 (605)
..+.++|..|...|+|++|+++|++++...+.. ..++..++.++...+++++|++.+++++...+ ...
T Consensus 56 ~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 135 (434)
T 4b4t_Q 56 TSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKH 135 (434)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHH
Confidence 344444555555555555555555544433221 12233344444444445555555544443311 113
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 007401 558 KAYLRRGTAREALFCYNEALQDFKHAMV 585 (605)
Q Consensus 558 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 585 (605)
..+.++|.+|...|+|++|+..+++++.
T Consensus 136 ~~~~~la~~~~~~g~~~~A~~~l~~~~~ 163 (434)
T 4b4t_Q 136 SLSIKLATLHYQKKQYKDSLALINDLLR 163 (434)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccChHHHHHHHHHHHH
Confidence 3444455555555555555555544443
No 226
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.57 E-value=0.00025 Score=74.01 Aligned_cols=89 Identities=13% Similarity=0.122 Sum_probs=73.5
Q ss_pred CCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-
Q 007401 482 TNGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKL-----NGTS---ATYYSNRAAAYLELGCFQQAEEDCSKTISL- 552 (605)
Q Consensus 482 ~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~-----~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~- 552 (605)
-+.++..+..+.++|..|..+|+|++|+.+|++++.+ .|++ ...++++|.+|..+|+|++|+..|++|+++
T Consensus 322 g~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~ 401 (429)
T 3qwp_A 322 PDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIM 401 (429)
T ss_dssp CTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred CccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 4567888999999999999999999999999999975 2444 667899999999999999999999999876
Q ss_pred ----CCCCHH---HHHHHHHHHHHc
Q 007401 553 ----DKKNVK---AYLRRGTAREAL 570 (605)
Q Consensus 553 ----~p~~~~---~~~~la~~~~~~ 570 (605)
.|+++. .+.+++.+...+
T Consensus 402 ~~~lG~~Hp~~~~~~~~l~~~~~e~ 426 (429)
T 3qwp_A 402 RVTHGREHSLIEDLILLLEECDANI 426 (429)
T ss_dssp HHHTCTTSHHHHHHHHHHHHHHHHH
T ss_pred HHhcCCCChHHHHHHHHHHHHHHHH
Confidence 467664 445566665443
No 227
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=97.56 E-value=0.00012 Score=75.74 Aligned_cols=98 Identities=14% Similarity=0.150 Sum_probs=68.3
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 007401 490 ELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREA 569 (605)
Q Consensus 490 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 569 (605)
..|..+|+.++..|+|++|+.+|.++ ..|..+|.|+.++|+|++|++.++++ +++..|.....++..
T Consensus 123 ~a~~~IGd~~~~~g~yeeA~~~Y~~a--------~n~~~LA~~L~~Lg~yq~AVea~~KA-----~~~~~Wk~v~~aCv~ 189 (449)
T 1b89_A 123 AHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVD 189 (449)
T ss_dssp --------------CTTTHHHHHHHT--------TCHHHHHHHHHTTTCHHHHHHHHHHH-----TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHh--------hhHHHHHHHHHHhccHHHHHHHHHHc-----CCchhHHHHHHHHHH
Confidence 48999999999999999999999987 47899999999999999999999999 589999999999999
Q ss_pred ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhh
Q 007401 570 LFCYNEALQDFKHAMVLEPQNKAANLAEKRLRKLI 604 (605)
Q Consensus 570 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~ 604 (605)
.|+++.|..+... +..+|++ ...+..++.+.
T Consensus 190 ~~ef~lA~~~~l~-L~~~ad~---l~~lv~~Yek~ 220 (449)
T 1b89_A 190 GKEFRLAQMCGLH-IVVHADE---LEELINYYQDR 220 (449)
T ss_dssp TTCHHHHHHTTTT-TTTCHHH---HHHHHHHHHHT
T ss_pred cCcHHHHHHHHHH-HHhCHhh---HHHHHHHHHHC
Confidence 9999999877664 3344433 33344444443
No 228
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.54 E-value=0.00016 Score=75.47 Aligned_cols=79 Identities=15% Similarity=0.204 Sum_probs=68.2
Q ss_pred CCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-
Q 007401 482 TNGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKL-----NGT---SATYYSNRAAAYLELGCFQQAEEDCSKTISL- 552 (605)
Q Consensus 482 ~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~-----~p~---~~~~~~~la~~~~~~~~~~~A~~~~~~al~~- 552 (605)
-++.+..+..+.++|..|..+|+|++|+.+|++++++ .|+ -+..++++|.+|..+|+|++|+..|++|+++
T Consensus 333 g~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~ 412 (433)
T 3qww_A 333 EDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIM 412 (433)
T ss_dssp CTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred ChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHH
Confidence 3567888999999999999999999999999999975 344 4667999999999999999999999999886
Q ss_pred ----CCCCHHHH
Q 007401 553 ----DKKNVKAY 560 (605)
Q Consensus 553 ----~p~~~~~~ 560 (605)
.|+++..-
T Consensus 413 ~~~lG~~Hp~~~ 424 (433)
T 3qww_A 413 EVAHGKDHPYIS 424 (433)
T ss_dssp HHHTCTTCHHHH
T ss_pred HHHcCCCChHHH
Confidence 46776543
No 229
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=97.47 E-value=0.00047 Score=57.80 Aligned_cols=80 Identities=10% Similarity=0.020 Sum_probs=70.2
Q ss_pred HHHHHHHHHHHHHHCCCHHH---HHHHHHHHHHhC-C-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHH
Q 007401 488 ASELLKEKGNAAFKGKQWNK---AVNYYSEAIKLN-G-TSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLR 562 (605)
Q Consensus 488 ~a~~~~~~g~~~~~~g~~~~---A~~~~~~al~~~-p-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 562 (605)
..+..+++|+.+.+..+..+ ++..++..+..+ | ..-++++.+|..++++++|.+|.++++..++.+|+|.++...
T Consensus 34 s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n~QA~~L 113 (126)
T 1nzn_A 34 SKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKEL 113 (126)
T ss_dssp CHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 36788999999999888777 999999998876 4 567899999999999999999999999999999999998776
Q ss_pred HHHHH
Q 007401 563 RGTAR 567 (605)
Q Consensus 563 la~~~ 567 (605)
...+-
T Consensus 114 k~~i~ 118 (126)
T 1nzn_A 114 ERLID 118 (126)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 65544
No 230
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.33 E-value=0.0008 Score=67.65 Aligned_cols=72 Identities=15% Similarity=0.084 Sum_probs=65.5
Q ss_pred hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH
Q 007401 486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVK 558 (605)
Q Consensus 486 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~ 558 (605)
+..+..+..++..++..|++++|+..+++++.++| +...|..+|.++...|++++|++.|++|+.++|....
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~-s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~t 345 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEM-SWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGANT 345 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHHH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcCh
Confidence 45677888889888889999999999999999996 4788899999999999999999999999999997764
No 231
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=97.30 E-value=0.003 Score=54.13 Aligned_cols=112 Identities=13% Similarity=-0.118 Sum_probs=94.7
Q ss_pred ChHHHHHHHHHHHHHHHCCCH------HHHHHHHHHHHHhCCC--------CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 007401 485 SIDASELLKEKGNAAFKGKQW------NKAVNYYSEAIKLNGT--------SATYYSNRAAAYLELGCFQQAEEDCSKTI 550 (605)
Q Consensus 485 ~~~~a~~~~~~g~~~~~~g~~------~~A~~~~~~al~~~p~--------~~~~~~~la~~~~~~~~~~~A~~~~~~al 550 (605)
.+++.+.|+.....+.+.|+. ++-.+.|++++..-|- +...|...|.. ...++.++|.+.|+.++
T Consensus 9 ~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a~ 87 (161)
T 4h7y_A 9 MANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQMAR 87 (161)
T ss_dssp -CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHHH
Confidence 356678888888888888998 8889999999987654 25567777755 56689999999999999
Q ss_pred hcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 007401 551 SLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAANLAE 597 (605)
Q Consensus 551 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 597 (605)
+++..+++.|...|.--.++|+..+|.+.+.+++.+.|.........
T Consensus 88 ~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~le~a 134 (161)
T 4h7y_A 88 ANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEMLEIA 134 (161)
T ss_dssp HHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHHHHH
Confidence 99999999999999999999999999999999999999887655443
No 232
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=97.24 E-value=0.001 Score=64.26 Aligned_cols=70 Identities=10% Similarity=0.039 Sum_probs=64.0
Q ss_pred HHHHHHHHHHHHHHHC-----CCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHH-cCCHHHHHHHHHHHHhcCCCC
Q 007401 487 DASELLKEKGNAAFKG-----KQWNKAVNYYSEAIKLNGTS-ATYYSNRAAAYLE-LGCFQQAEEDCSKTISLDKKN 556 (605)
Q Consensus 487 ~~a~~~~~~g~~~~~~-----g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~-~~~~~~A~~~~~~al~~~p~~ 556 (605)
.....|..+|..|.+. |+.++|.++|+++++++|+. ...++.+|..+.. .++++++.+.++++++.+|+.
T Consensus 197 ~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~ 273 (301)
T 3u64_A 197 QEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPES 273 (301)
T ss_dssp HHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGG
T ss_pred ccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCC
Confidence 3677999999999995 99999999999999999975 9999999999988 599999999999999998863
No 233
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=97.20 E-value=0.0039 Score=53.05 Aligned_cols=80 Identities=9% Similarity=0.035 Sum_probs=69.6
Q ss_pred HHHHHHHHHHHHHHCCCH---HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 007401 488 ASELLKEKGNAAFKGKQW---NKAVNYYSEAIKLNGT-SATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRR 563 (605)
Q Consensus 488 ~a~~~~~~g~~~~~~g~~---~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 563 (605)
..+..+++++++.+..+- .+++..++..+...|. .-+.++.+|..++++++|.+|.++++..++.+|+|.++....
T Consensus 38 s~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~Lk 117 (144)
T 1y8m_A 38 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALK 117 (144)
T ss_dssp CHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHHHH
T ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 477889999999998765 5799999999998884 578999999999999999999999999999999999887765
Q ss_pred HHHH
Q 007401 564 GTAR 567 (605)
Q Consensus 564 a~~~ 567 (605)
..+-
T Consensus 118 ~~Ie 121 (144)
T 1y8m_A 118 SMVE 121 (144)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5544
No 234
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=97.18 E-value=0.0038 Score=52.43 Aligned_cols=81 Identities=9% Similarity=0.042 Sum_probs=70.1
Q ss_pred HHHHHHHHHHHHHCCCH---HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 007401 489 SELLKEKGNAAFKGKQW---NKAVNYYSEAIKLNGT-SATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRG 564 (605)
Q Consensus 489 a~~~~~~g~~~~~~g~~---~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la 564 (605)
.+..+++|+.+.+..+. .+++..++..++.+|. .-+.++.+|..++++|+|.+|.++++.+++.+|+|.++.....
T Consensus 40 ~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~Lk~ 119 (134)
T 3o48_A 40 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKS 119 (134)
T ss_dssp HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHHHH
T ss_pred hhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHHHH
Confidence 67889999999987754 5799999999998884 5889999999999999999999999999999999998877666
Q ss_pred HHHHH
Q 007401 565 TAREA 569 (605)
Q Consensus 565 ~~~~~ 569 (605)
.+-.+
T Consensus 120 ~Ie~k 124 (134)
T 3o48_A 120 MVEDK 124 (134)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55433
No 235
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=97.08 E-value=0.0028 Score=69.96 Aligned_cols=99 Identities=13% Similarity=0.004 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHHHHCCCHHHHH-HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----------CCC
Q 007401 488 ASELLKEKGNAAFKGKQWNKAV-NYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISL-----------DKK 555 (605)
Q Consensus 488 ~a~~~~~~g~~~~~~g~~~~A~-~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-----------~p~ 555 (605)
..+.|+..+..+...|+.++|. ..|++++...|.+..+|..++......+++++|.+.|++++.. .|.
T Consensus 342 ~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~ 421 (679)
T 4e6h_A 342 APEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPT 421 (679)
T ss_dssp CHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTT
T ss_pred CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCc
Confidence 3556666666666666666665 6666666666666666666666666666666666666666653 132
Q ss_pred -----------CHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q 007401 556 -----------NVKAYLRRGTAREALFCYNEALQDFKHAMVL 586 (605)
Q Consensus 556 -----------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 586 (605)
+..+|..++....+.|+.+.|.+.|.+|++.
T Consensus 422 ~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~ 463 (679)
T 4e6h_A 422 NESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRL 463 (679)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHT
T ss_pred chhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 2335555555555556666666666666554
No 236
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=96.84 E-value=0.0053 Score=67.70 Aligned_cols=116 Identities=6% Similarity=-0.133 Sum_probs=91.8
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 007401 488 ASELLKEKGNAAFKGKQWNKAVNYYSEAIKL-NGTSATYYSNRAAAYLELG-CFQQAEEDCSKTISLDKKNVKAYLRRGT 565 (605)
Q Consensus 488 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~la~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~la~ 565 (605)
....|...+....+.++.+.|...|.+|++. .+....+|...+....+.+ +++.|.+.|+++++..|+++..|...+.
T Consensus 433 ~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~ 512 (679)
T 4e6h_A 433 LTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLD 512 (679)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHH
Confidence 3557888888888889999999999999987 4455677777777766654 4899999999999999999999888888
Q ss_pred HHHHccCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHh
Q 007401 566 AREALFCYNEALQDFKHAMVLEPQ---NKAANLAEKRLRKL 603 (605)
Q Consensus 566 ~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~~~~~~~~ 603 (605)
.....|+.+.|...|++++...|+ ....+.........
T Consensus 513 fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~ 553 (679)
T 4e6h_A 513 FLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESK 553 (679)
T ss_dssp HHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 888889999999999999998873 34455544444433
No 237
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=96.68 E-value=0.0073 Score=52.92 Aligned_cols=81 Identities=17% Similarity=0.147 Sum_probs=65.8
Q ss_pred hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-------------------------CCHHHHHHHHHHHHHcCCHH
Q 007401 486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNG-------------------------TSATYYSNRAAAYLELGCFQ 540 (605)
Q Consensus 486 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-------------------------~~~~~~~~la~~~~~~~~~~ 540 (605)
...++.+..+|+.+|.+++|.+|+..|+++++... .+.++.+.++.||.+++++.
T Consensus 60 ~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~ 139 (167)
T 3ffl_A 60 PQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDK 139 (167)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC--------------------CCCCHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHH
Confidence 35688999999999999999999999999986421 11278899999999999999
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 007401 541 QAEEDCSKTISLDKKNVKAYLRRGTAR 567 (605)
Q Consensus 541 ~A~~~~~~al~~~p~~~~~~~~la~~~ 567 (605)
+|+..++. |-.....++....+|..|
T Consensus 140 ~Ai~~Le~-Ip~k~Rt~kvnm~LakLy 165 (167)
T 3ffl_A 140 DAIAILDG-IPSRQRTPKINMLLANLY 165 (167)
T ss_dssp HHHHHHHT-SCGGGCCHHHHHHHHHHC
T ss_pred HHHHHHhc-CCchhcCHHHHHHHHHHh
Confidence 99988754 333446788888888776
No 238
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=96.36 E-value=0.046 Score=58.00 Aligned_cols=111 Identities=8% Similarity=-0.059 Sum_probs=85.2
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH-----------------------------------
Q 007401 488 ASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAA----------------------------------- 532 (605)
Q Consensus 488 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~----------------------------------- 532 (605)
....|+..+..+.+.|+.++|...|++++.. |.+...+...+..
T Consensus 212 ~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~ 290 (493)
T 2uy1_A 212 AEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYYGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRI 290 (493)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHTTCTHHHHHHHHHTC----------CHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhcchhHHHHHHHHHHHhhccchhhhhcccccHHHHH
Confidence 3788999999999999999999999999999 9886555444332
Q ss_pred -----HHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 007401 533 -----YLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREALF-CYNEALQDFKHAMVLEPQNKAANLAEKRL 600 (605)
Q Consensus 533 -----~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 600 (605)
....++.+.|.+.|.+| +..+.....|...|..-...+ +.+.|...|+++++..|+++..+......
T Consensus 291 ~y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~ 363 (493)
T 2uy1_A 291 NHLNYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLF 363 (493)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 22355678899999999 444445677777777766666 69999999999999999887665544443
No 239
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=96.33 E-value=0.056 Score=55.33 Aligned_cols=62 Identities=11% Similarity=-0.046 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 007401 524 TYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMV 585 (605)
Q Consensus 524 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 585 (605)
.+...++..+...|++.+++..+++++..+|-+-.+|..+-.+|...|+..+|++.|+++-+
T Consensus 172 ~a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~ 233 (388)
T 2ff4_A 172 LAHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT 233 (388)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34556788888999999999999999999999999999999999999999999999988755
No 240
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=95.81 E-value=0.1 Score=49.60 Aligned_cols=61 Identities=25% Similarity=0.232 Sum_probs=57.1
Q ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH
Q 007401 497 NAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNV 557 (605)
Q Consensus 497 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~ 557 (605)
..+++.|+.++|++.....++.+|.|+.....+-+.+.-.|++++|.+.++.+.+++|+..
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~ 65 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYL 65 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGH
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhh
Confidence 4678899999999999999999999999999999999999999999999999999999764
No 241
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=95.17 E-value=0.042 Score=60.69 Aligned_cols=61 Identities=11% Similarity=0.108 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 007401 523 ATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHA 583 (605)
Q Consensus 523 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 583 (605)
...+...+..++.+++|+-|+++.++|+.+-|.....|+.|+.||..+|+|+.|+-.++.+
T Consensus 337 ~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 337 SDLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred hHHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 3466667888889999999999999999999999999999999999999999999887765
No 242
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=94.95 E-value=0.26 Score=52.17 Aligned_cols=95 Identities=11% Similarity=-0.136 Sum_probs=78.1
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 007401 488 ASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELG-CFQQAEEDCSKTISLDKKNVKAYLRRGTA 566 (605)
Q Consensus 488 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~la~~ 566 (605)
....|...+....+.++.+.|...|+++ ...+.....|...|...+..+ +.+.|.+.|+++++..|+++..|...+..
T Consensus 285 ~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~ 363 (493)
T 2uy1_A 285 LDLLRINHLNYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLF 363 (493)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 3467888888888888899999999999 433346677777777766655 69999999999999999999888888888
Q ss_pred HHHccCHHHHHHHHHHH
Q 007401 567 REALFCYNEALQDFKHA 583 (605)
Q Consensus 567 ~~~~g~~~~A~~~~~~a 583 (605)
....|+.+.|...|+++
T Consensus 364 e~~~~~~~~aR~l~er~ 380 (493)
T 2uy1_A 364 LLRIGDEENARALFKRL 380 (493)
T ss_dssp HHHHTCHHHHHHHHHHS
T ss_pred HHHcCCHHHHHHHHHHH
Confidence 88899999998888876
No 243
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=94.69 E-value=0.44 Score=50.46 Aligned_cols=98 Identities=7% Similarity=-0.022 Sum_probs=84.6
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHH
Q 007401 489 SELLKEKGNAAFKGKQWNKAVNYYSEAIKLN-GTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDK-KNVKAYLRRGTA 566 (605)
Q Consensus 489 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~ 566 (605)
...|..+-..+.+.|++++|++.|++..+.. .-+...|..+-..|.+.|+.++|.+.|++..+..- -+...|..+-.+
T Consensus 105 ~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~ 184 (501)
T 4g26_A 105 EATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKV 184 (501)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Confidence 5678888899999999999999999988753 22578888899999999999999999999887642 267899999999
Q ss_pred HHHccCHHHHHHHHHHHHHh
Q 007401 567 REALFCYNEALQDFKHAMVL 586 (605)
Q Consensus 567 ~~~~g~~~~A~~~~~~al~~ 586 (605)
+.+.|+.++|.+.|++..+.
T Consensus 185 ~~~~g~~d~A~~ll~~Mr~~ 204 (501)
T 4g26_A 185 SMDTKNADKVYKTLQRLRDL 204 (501)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HhhCCCHHHHHHHHHHHHHh
Confidence 99999999999999998765
No 244
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=94.69 E-value=0.14 Score=53.81 Aligned_cols=82 Identities=18% Similarity=0.075 Sum_probs=75.2
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 007401 489 SELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTARE 568 (605)
Q Consensus 489 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 568 (605)
-..+..+|+.......+..|..+|.+|+.+.|++...|+.+|.++...+++-+|+-+|.+++.....++.+..++...+.
T Consensus 152 hr~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~ 231 (497)
T 1ya0_A 152 QHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALS 231 (497)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Confidence 45778899999999999999999999999999999999999999999999999999999999887779999999988876
Q ss_pred Hc
Q 007401 569 AL 570 (605)
Q Consensus 569 ~~ 570 (605)
..
T Consensus 232 ~~ 233 (497)
T 1ya0_A 232 KA 233 (497)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 245
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=94.60 E-value=0.41 Score=41.06 Aligned_cols=87 Identities=11% Similarity=-0.032 Sum_probs=72.3
Q ss_pred CChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 007401 484 GSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRR 563 (605)
Q Consensus 484 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 563 (605)
.....+..|...+.. ...++.++|-+.|+.+++++..++.+|...|+.-...|+..+|.+.+.+|+-+.|...+. +..
T Consensus 56 ~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~-le~ 133 (161)
T 4h7y_A 56 QNESFARIQVRFAEL-KAIQEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEM-LEI 133 (161)
T ss_dssp TCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHH-HHH
T ss_pred cHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHH-HHH
Confidence 455678888888865 566999999999999999988899999999999999999999999999999999975543 344
Q ss_pred HHHHHHccC
Q 007401 564 GTAREALFC 572 (605)
Q Consensus 564 a~~~~~~g~ 572 (605)
+..-.+.|.
T Consensus 134 a~~nl~~~~ 142 (161)
T 4h7y_A 134 ALRNLNLQK 142 (161)
T ss_dssp HHHHHHTTC
T ss_pred HHHhhhcCC
Confidence 555555554
No 246
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=94.47 E-value=0.2 Score=52.67 Aligned_cols=79 Identities=10% Similarity=-0.073 Sum_probs=66.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 007401 524 TYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAANLAEKRLRK 602 (605)
Q Consensus 524 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 602 (605)
..+..+|++......+..|..+|.+|..+.|++...|+.+|.+....|+.-+|+.+|.+++....-.+.+..++..+..
T Consensus 153 r~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~ 231 (497)
T 1ya0_A 153 HCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALS 231 (497)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Confidence 3677888888888888999999999999999999999999999988999989999988888877667777777766554
No 247
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=94.28 E-value=0.12 Score=57.01 Aligned_cols=62 Identities=16% Similarity=0.119 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 007401 488 ASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKT 549 (605)
Q Consensus 488 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a 549 (605)
....+..++..+..+|+|+-|+++-++++...|++...|+.|+.||..+++|+.|+-.++-+
T Consensus 336 ~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 336 MSDLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred chHHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 34578889999999999999999999999999999999999999999999999999777665
No 248
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=93.82 E-value=0.93 Score=39.49 Aligned_cols=100 Identities=7% Similarity=-0.014 Sum_probs=79.0
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH--hcC--------------
Q 007401 490 ELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTI--SLD-------------- 553 (605)
Q Consensus 490 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al--~~~-------------- 553 (605)
+.-..++..++-.|.|..++-.+. .-+.....+....||.++.+|.+|+.+++..+ +.+
T Consensus 34 eY~lL~~I~LyyngEY~R~Lf~L~-----~lNT~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffv 108 (242)
T 3kae_A 34 EYRMLMSIVLYLNGEYTRALFHLH-----KLNTCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFV 108 (242)
T ss_dssp CTHHHHHHHHHHTTCHHHHHHHHH-----TCCBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSC
T ss_pred HHHhhhhhhhhhcchHhHHHHHHH-----hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeee
Confidence 344567888999999999887543 33567888889999999999999999999998 332
Q ss_pred -CCCHH-HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHH
Q 007401 554 -KKNVK-AYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAAN 594 (605)
Q Consensus 554 -p~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 594 (605)
|.+-+ .+..+|..+.+.|+.++|+..|......+|-...+.
T Consensus 109 d~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~lf~~vE 151 (242)
T 3kae_A 109 DPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGKSFLFSPVE 151 (242)
T ss_dssp CTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHH
T ss_pred ccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCccccchHH
Confidence 34444 556689999999999999999999998887554443
No 249
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=93.11 E-value=0.96 Score=45.93 Aligned_cols=95 Identities=11% Similarity=-0.002 Sum_probs=75.8
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---CCC----HHH
Q 007401 493 KEKGNAAFKGKQWNKAVNYYSEAIKLNGT------SATYYSNRAAAYLELGCFQQAEEDCSKTISLD---KKN----VKA 559 (605)
Q Consensus 493 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~---p~~----~~~ 559 (605)
..+|..|+..|+|.+|++.+.+..+--.. -.+++..-...|..++++.++...|.+|.... +.+ +..
T Consensus 103 ~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i 182 (394)
T 3txn_A 103 ARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGAL 182 (394)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHH
Confidence 47899999999999999999998874221 24667778888999999999999999986553 122 346
Q ss_pred HHHHHHHHH-HccCHHHHHHHHHHHHHhC
Q 007401 560 YLRRGTARE-ALFCYNEALQDFKHAMVLE 587 (605)
Q Consensus 560 ~~~la~~~~-~~g~~~~A~~~~~~al~~~ 587 (605)
...-|..+. ..++|++|..+|-++++-.
T Consensus 183 ~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f 211 (394)
T 3txn_A 183 DLQSGILHAADERDFKTAFSYFYEAFEGF 211 (394)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHhccCHHHHHHHHHHHHhcc
Confidence 667888888 8999999999999987543
No 250
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.93 E-value=0.49 Score=48.94 Aligned_cols=99 Identities=9% Similarity=-0.090 Sum_probs=80.2
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCCH----HHH
Q 007401 490 ELLKEKGNAAFKGKQWNKAVNYYSEAIKLNG---TSATYYSNRAAAYLELGCFQQAEEDCSKTISLD--KKNV----KAY 560 (605)
Q Consensus 490 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--p~~~----~~~ 560 (605)
..+..+|..+++.|++++|.+.|.++..... +-.+.+.....++...+++..+...+.++-.+. ..++ ...
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk 211 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYK 211 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHH
Confidence 4567889999999999999999999987543 347888899999999999999999999986652 1222 355
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhCC
Q 007401 561 LRRGTAREALFCYNEALQDFKHAMVLEP 588 (605)
Q Consensus 561 ~~la~~~~~~g~~~~A~~~~~~al~~~p 588 (605)
.+.|..+...++|.+|...|..++.-..
T Consensus 212 ~~~gl~~l~~r~f~~Aa~~f~e~~~t~~ 239 (429)
T 4b4t_R 212 TYYGIHCLAVRNFKEAAKLLVDSLATFT 239 (429)
T ss_dssp HHHHHGGGGTSCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHhChHHHHHHHHHHHhccCC
Confidence 5678888899999999999988876654
No 251
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.60 E-value=1.7 Score=45.08 Aligned_cols=102 Identities=13% Similarity=0.049 Sum_probs=80.3
Q ss_pred ChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-hCC-C----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---cCCC
Q 007401 485 SIDASELLKEKGNAAFKGKQWNKAVNYYSEAIK-LNG-T----SATYYSNRAAAYLELGCFQQAEEDCSKTIS---LDKK 555 (605)
Q Consensus 485 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~-~~p-~----~~~~~~~la~~~~~~~~~~~A~~~~~~al~---~~p~ 555 (605)
..+.+.....++..+...|+|.+|...+..... ... . -.+.+......|+..++|.+|...++++-. -.+.
T Consensus 133 E~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~ 212 (445)
T 4b4t_P 133 EVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPK 212 (445)
T ss_dssp CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCC
Confidence 345677888899999999999999999998753 211 1 156778888999999999999999988632 2333
Q ss_pred CH----HHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q 007401 556 NV----KAYLRRGTAREALFCYNEALQDFKHAMVL 586 (605)
Q Consensus 556 ~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~ 586 (605)
++ ..+...|..+...++|.+|..+|..++..
T Consensus 213 ~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~ 247 (445)
T 4b4t_P 213 YESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQT 247 (445)
T ss_dssp CHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 33 36777899999999999999999998864
No 252
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=92.45 E-value=0.55 Score=44.55 Aligned_cols=63 Identities=17% Similarity=0.010 Sum_probs=57.9
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHH
Q 007401 532 AYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAAN 594 (605)
Q Consensus 532 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 594 (605)
.+++.++.++|++.+...++.+|.|......+-..+.-.|+++.|.+.++.+.+++|+.....
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a 68 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGA 68 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHH
Confidence 455778999999999999999999999999999999999999999999999999999886543
No 253
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=92.01 E-value=1.9 Score=45.45 Aligned_cols=100 Identities=9% Similarity=-0.022 Sum_probs=77.2
Q ss_pred CCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHccCHHHHHHHH
Q 007401 503 KQWNKAVNYYSEAIKLNG-TSATYYSNRAAAYLELGCFQQAEEDCSKTISLD-KKNVKAYLRRGTAREALFCYNEALQDF 580 (605)
Q Consensus 503 g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~ 580 (605)
++.++|.+.|++.....- -+...|..+-..|.+.|++++|.+.+++..+.. .-+...|..+-..|.+.|+.++|.+.|
T Consensus 84 ~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~ 163 (501)
T 4g26_A 84 PGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVD 163 (501)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHH
Confidence 346888999998876532 257889999999999999999999999988753 226889999999999999999999999
Q ss_pred HHHHHhCC-CCHHHHHHHHHHHH
Q 007401 581 KHAMVLEP-QNKAANLAEKRLRK 602 (605)
Q Consensus 581 ~~al~~~p-~~~~~~~~~~~~~~ 602 (605)
++..+..- -|...+..+-..+.
T Consensus 164 ~~M~~~G~~Pd~~ty~~Li~~~~ 186 (501)
T 4g26_A 164 AHMVESEVVPEEPELAALLKVSM 186 (501)
T ss_dssp HHHHHTTCCCCHHHHHHHHHHHH
T ss_pred HHHHhcCCCCCHHHHHHHHHHHh
Confidence 99887531 13444444444433
No 254
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=91.83 E-value=6.1 Score=34.47 Aligned_cols=101 Identities=9% Similarity=-0.035 Sum_probs=76.0
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHH--h---------------CCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHH
Q 007401 489 SELLKEKGNAAFKGKQWNKAVNYYSEAIK--L---------------NGTSAT-YYSNRAAAYLELGCFQQAEEDCSKTI 550 (605)
Q Consensus 489 a~~~~~~g~~~~~~g~~~~A~~~~~~al~--~---------------~p~~~~-~~~~la~~~~~~~~~~~A~~~~~~al 550 (605)
+-..+-...++.+.++|..|+..+++.+. . +|.+.+ .+..+|..+.+.++-++|+.++....
T Consensus 62 ~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf 141 (242)
T 3kae_A 62 CTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSF 141 (242)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhc
Confidence 44555568899999999999999999993 2 344444 45678999999999999999998877
Q ss_pred hcCCCC------------------------------------------------------------HHHHHHHHHHHHHc
Q 007401 551 SLDKKN------------------------------------------------------------VKAYLRRGTAREAL 570 (605)
Q Consensus 551 ~~~p~~------------------------------------------------------------~~~~~~la~~~~~~ 570 (605)
..+|-. ....-+.+..|+.+
T Consensus 142 ~~~~lf~~vEnliyeN~vp~~~d~~~i~~~~~~~i~~~y~~d~~~lHe~~s~~~ikkY~n~iPGiGSY~va~aa~~yf~l 221 (242)
T 3kae_A 142 GKSFLFSPVENLLLENKVPQKRDKENVRQTGRRGIEEEYVSDSIEFHESLSPSLVKKYMEHVPGIGSYFISNAARRYFNL 221 (242)
T ss_dssp HHCCCHHHHHHHHHTTCCCCCC-----------CHHHHHHHHHHHHHHHCCHHHHHHHHTSTTTHHHHHHHHHHHHHHHT
T ss_pred CCccccchHHHHHhhcCCCcccchHHHHhhhhccchhhhhhhHHHHHHhccHHHHHHHHHhCCCchhHHHHHHHHHHHhc
Confidence 765411 11222356677888
Q ss_pred cCHHHHHHHHHHHHHhCCC
Q 007401 571 FCYNEALQDFKHAMVLEPQ 589 (605)
Q Consensus 571 g~~~~A~~~~~~al~~~p~ 589 (605)
|-.++...+|...-+.+|.
T Consensus 222 g~~d~s~~lf~~lR~kDP~ 240 (242)
T 3kae_A 222 GMNDKSKACFELVRRKDPM 240 (242)
T ss_dssp TCHHHHHHHHHHHHHHSTT
T ss_pred ccchhHHHHHHHHHhcCCC
Confidence 8888888888888888875
No 255
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=90.42 E-value=0.92 Score=46.19 Aligned_cols=62 Identities=8% Similarity=-0.037 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 007401 490 ELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTIS 551 (605)
Q Consensus 490 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 551 (605)
.....++..+...|++.+|+..+++++..+|-+..++..+..+|+..|+..+|++.|+++-+
T Consensus 172 ~a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~ 233 (388)
T 2ff4_A 172 LAHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT 233 (388)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34556678889999999999999999999999999999999999999999999999988654
No 256
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=88.96 E-value=0.41 Score=50.07 Aligned_cols=104 Identities=14% Similarity=0.072 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHH----------HHHHHHHh-----CC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 007401 488 ASELLKEKGNAAFKGKQWNKAVN----------YYSEAIKL-----NG-TSATYYSNRAAAYLELGCFQQAEEDCSKTIS 551 (605)
Q Consensus 488 ~a~~~~~~g~~~~~~g~~~~A~~----------~~~~al~~-----~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 551 (605)
.+..|+-....+...|+..+... .+-.++.. +. ..+..++.+-..|+..+.|++|....+++.-
T Consensus 180 ~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rta~lr~D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~f 259 (523)
T 4b4t_S 180 NAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKIASLKHDNETKAMLINLILRDFLNNGEVDSASDFISKLEY 259 (523)
T ss_dssp -----------------------CHHHHHHHHTHHHHHHHHCCSCSSSCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhcccCcchhHHHHHHHHHHHHccCcHHHHHHHHhcCcC
Confidence 35566666666666666554321 22222221 22 1367788889999999999999999999853
Q ss_pred cCC--CC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH
Q 007401 552 LDK--KN---VKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNK 591 (605)
Q Consensus 552 ~~p--~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 591 (605)
-.. .| ...+|++|.++..+++|.+|.+++..|++..|.+.
T Consensus 260 P~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~~ 304 (523)
T 4b4t_S 260 PHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHNS 304 (523)
T ss_dssp CTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCSS
T ss_pred CcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcch
Confidence 221 12 44788899999999999999999999999887653
No 257
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=87.87 E-value=3.5 Score=36.52 Aligned_cols=44 Identities=11% Similarity=0.031 Sum_probs=22.9
Q ss_pred HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 007401 500 FKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSK 548 (605)
Q Consensus 500 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~ 548 (605)
.+.|+++.|.+..++. ++...|..+|...+..++++-|..+|++
T Consensus 16 L~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~ 59 (177)
T 3mkq_B 16 LEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQT 59 (177)
T ss_dssp HHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 4455555555544432 3445555555555555555555555544
No 258
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=87.81 E-value=1.9 Score=48.08 Aligned_cols=45 Identities=18% Similarity=0.130 Sum_probs=31.7
Q ss_pred HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 007401 500 FKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKT 549 (605)
Q Consensus 500 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a 549 (605)
...|++++|.+..+ .-++...|..+|..+.+.++++.|+++|.++
T Consensus 663 l~~~~~~~A~~~~~-----~~~~~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 663 LKVGQLTLARDLLT-----DESAEMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHHTCHHHHHHHHT-----TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhcCCHHHHHHHHH-----hhCcHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 44555555555432 2356788888888888888888888888775
No 259
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=87.40 E-value=8.7 Score=43.67 Aligned_cols=100 Identities=7% Similarity=-0.095 Sum_probs=83.6
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCCHHHH
Q 007401 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKL----NGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLD--KKNVKAY 560 (605)
Q Consensus 487 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~ 560 (605)
..-..|..+=+.+.+.|+.++|.+.|++.-+. ..-+...|+.+-..|.+.|++++|.+.|++..+.. | |...|
T Consensus 125 ~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~P-DvvTY 203 (1134)
T 3spa_A 125 GQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTP-DLLSY 203 (1134)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCC-CHHHH
T ss_pred hHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-cHHHH
Confidence 45567888999999999999999999775432 23467889999999999999999999999988753 5 78899
Q ss_pred HHHHHHHHHccC-HHHHHHHHHHHHHhC
Q 007401 561 LRRGTAREALFC-YNEALQDFKHAMVLE 587 (605)
Q Consensus 561 ~~la~~~~~~g~-~~~A~~~~~~al~~~ 587 (605)
..+-.++.+.|+ .++|.+.|++..+..
T Consensus 204 ntLI~glcK~G~~~e~A~~Ll~EM~~kG 231 (1134)
T 3spa_A 204 AAALQCMGRQDQDAGTIERCLEQMSQEG 231 (1134)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHcC
Confidence 999999999998 478889999887764
No 260
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=84.56 E-value=7.8 Score=34.22 Aligned_cols=80 Identities=11% Similarity=-0.077 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 007401 489 SELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTARE 568 (605)
Q Consensus 489 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 568 (605)
...|..+|...+.+|+++-|.++|+++-.. ..+-..|...|+.++-.+..+.+...+..+. .-.+++
T Consensus 34 ~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D~--------~~L~~Ly~~tg~~e~L~kla~iA~~~g~~n~-----af~~~l 100 (177)
T 3mkq_B 34 SITWERLIQEALAQGNASLAEMIYQTQHSF--------DKLSFLYLVTGDVNKLSKMQNIAQTREDFGS-----MLLNTF 100 (177)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHTTCH--------HHHHHHHHHHTCHHHHHHHHHHHHHTTCHHH-----HHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHhCCH--------HHHHHHHHHhCCHHHHHHHHHHHHHCccHHH-----HHHHHH
Confidence 568999999999999999999999986432 2333344445555544444444433322111 122344
Q ss_pred HccCHHHHHHHHH
Q 007401 569 ALFCYNEALQDFK 581 (605)
Q Consensus 569 ~~g~~~~A~~~~~ 581 (605)
.+|+++++++.|.
T Consensus 101 ~lGdv~~~i~lL~ 113 (177)
T 3mkq_B 101 YNNSTKERSSIFA 113 (177)
T ss_dssp HHTCHHHHHHHHH
T ss_pred HcCCHHHHHHHHH
Confidence 4555555554443
No 261
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=84.40 E-value=5.3 Score=44.39 Aligned_cols=83 Identities=13% Similarity=0.029 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHH
Q 007401 489 SELLKEKGNAAFKGKQWNKAVNYYSEAIKL--------NGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAY 560 (605)
Q Consensus 489 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 560 (605)
...|.++|..+.+.++++.|+++|.++-.. ...+.+.+..++......+++..|...|.+. ++.
T Consensus 681 ~~~W~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~~~~~~~~~~~~~a~~~~~~~~A~~~~~~~-----g~~--- 752 (814)
T 3mkq_A 681 EMKWRALGDASLQRFNFKLAIEAFTNAHDLESLFLLHSSFNNKEGLVTLAKDAETTGKFNLAFNAYWIA-----GDI--- 752 (814)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH-----TCH---
T ss_pred HhHHHHHHHHHHHcCCHHHHHHHHHHccChhhhHHHHHHcCCHHHHHHHHHHHHHcCchHHHHHHHHHc-----CCH---
Confidence 568999999999999999999999986221 2344555556666666666666655554331 111
Q ss_pred HHHHHHHHHccCHHHHHHH
Q 007401 561 LRRGTAREALFCYNEALQD 579 (605)
Q Consensus 561 ~~la~~~~~~g~~~~A~~~ 579 (605)
...-.+|.+.+++++|...
T Consensus 753 ~~a~~~~~~~~~~~~A~~l 771 (814)
T 3mkq_A 753 QGAKDLLIKSQRFSEAAFL 771 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHcCChHHHHHH
Confidence 1123345566666666544
No 262
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=75.85 E-value=7.8 Score=45.37 Aligned_cols=92 Identities=14% Similarity=0.031 Sum_probs=71.8
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh-----------------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 007401 492 LKEKGNAAFKGKQWNKAVNYYSEAIKL-----------------------NGTSATYYSNRAAAYLELGCFQQAEEDCSK 548 (605)
Q Consensus 492 ~~~~g~~~~~~g~~~~A~~~~~~al~~-----------------------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~ 548 (605)
-+.+|.+++..|++++|.++|+++..- ....+..|......+.+.+.++.+++..+.
T Consensus 845 ~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~l 924 (1139)
T 4fhn_B 845 VYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLL 924 (1139)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 477899999999999999999987421 011245677778888888999999999999
Q ss_pred HHhcCC-CCH----HHHHHHHHHHHHccCHHHHHHHHHHH
Q 007401 549 TISLDK-KNV----KAYLRRGTAREALFCYNEALQDFKHA 583 (605)
Q Consensus 549 al~~~p-~~~----~~~~~la~~~~~~g~~~~A~~~~~~a 583 (605)
|++..+ ++. ..|.++=..+..+++|++|...+...
T Consensus 925 Ai~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~ 964 (1139)
T 4fhn_B 925 ADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVL 964 (1139)
T ss_dssp HHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHH
T ss_pred HHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhC
Confidence 998653 433 26777888899999999997777543
No 263
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=74.42 E-value=44 Score=32.69 Aligned_cols=95 Identities=11% Similarity=-0.001 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-h-C-----------------------CCCHHHHHHHHHHHHHcCC---
Q 007401 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIK-L-N-----------------------GTSATYYSNRAAAYLELGC--- 538 (605)
Q Consensus 487 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~-~-~-----------------------p~~~~~~~~la~~~~~~~~--- 538 (605)
+.-+.+..+.+-|.++++|++|++.+..... + . +-+.+....+..++.....
T Consensus 33 EAHQ~~RTi~~Ry~~~k~y~eAidLL~~GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~~~~~~p 112 (336)
T 3lpz_A 33 EAAQETRLVAARYSKQGNWAAAVDILASVSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRLFQPGEP 112 (336)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTSCTTCH
T ss_pred HHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCCc
Confidence 3456777788888888888888886544322 1 1 1112222233333322221
Q ss_pred -----HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHH
Q 007401 539 -----FQQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEALQDFK 581 (605)
Q Consensus 539 -----~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 581 (605)
..+|+++-.+.=...-.++..+..+|..|.+.+++.+|...|-
T Consensus 113 ~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i 160 (336)
T 3lpz_A 113 VRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV 160 (336)
T ss_dssp HHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Confidence 1122222221111123578899999999999999999988873
No 264
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=73.44 E-value=5.8 Score=41.41 Aligned_cols=69 Identities=13% Similarity=0.037 Sum_probs=58.2
Q ss_pred hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 007401 486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTS-------ATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKN 556 (605)
Q Consensus 486 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~ 556 (605)
...+..+..+=..|...+.|++|..+..++. .|.+ ...++.+|.++.-.++|.+|.+++..|++..|.+
T Consensus 228 ~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~ 303 (523)
T 4b4t_S 228 ETKAMLINLILRDFLNNGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHN 303 (523)
T ss_dssp CHHHHHHHHHHHHHHHSSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCS
T ss_pred chhHHHHHHHHHHHHccCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcc
Confidence 4667888889999999999999999999984 3322 5677889999999999999999999999887643
No 265
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=72.76 E-value=16 Score=36.94 Aligned_cols=61 Identities=18% Similarity=0.137 Sum_probs=49.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhc----CCC--CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Q 007401 527 SNRAAAYLELGCFQQAEEDCSKTISL----DKK--NVKAYLRRGTAREALFCYNEALQDFKHAMVLE 587 (605)
Q Consensus 527 ~~la~~~~~~~~~~~A~~~~~~al~~----~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 587 (605)
..+|..|+..|+|.+|.+.+.+..+- |.. -.+.+.....+|..++++.++...|.++....
T Consensus 103 ~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~ 169 (394)
T 3txn_A 103 ARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTA 169 (394)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhh
Confidence 37899999999999999999887763 211 13577888889999999999999999997664
No 266
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=72.17 E-value=27 Score=39.81 Aligned_cols=94 Identities=19% Similarity=0.061 Sum_probs=71.9
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-c--C------------------
Q 007401 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTIS-L--D------------------ 553 (605)
Q Consensus 495 ~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~-~--~------------------ 553 (605)
+...+...+.++-+. +.+...|.++..-|.+|.+|+..|++++|..+|++|-. + +
T Consensus 816 l~~~L~~~~~~~~a~----eL~~~~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~~~e 891 (950)
T 4gq2_M 816 LVEKLFLFKQYNACM----QLIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYH 891 (950)
T ss_dssp HHHHHHHTTCHHHHH----HHGGGCCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHHHTT
T ss_pred HHHHHHHhcHHHHHH----HHHhhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhhccCccc
Confidence 456677788877554 35677888888889999999999999999999988642 1 1
Q ss_pred CCC--HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHH
Q 007401 554 KKN--VKAYLRRGTAREALFCYNEALQDFKHAMVLE-PQNKA 592 (605)
Q Consensus 554 p~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~ 592 (605)
++. ...|+.....+.+.+-++.+++..+.|++.- +++..
T Consensus 892 ~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~ 933 (950)
T 4gq2_M 892 HQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDED 933 (950)
T ss_dssp TCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHH
T ss_pred ccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCcc
Confidence 111 2366668888999999999999999999754 45554
No 267
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=71.99 E-value=46 Score=32.28 Aligned_cols=27 Identities=15% Similarity=-0.167 Sum_probs=24.2
Q ss_pred CCHHHHHHHHHHHHHccCHHHHHHHHH
Q 007401 555 KNVKAYLRRGTAREALFCYNEALQDFK 581 (605)
Q Consensus 555 ~~~~~~~~la~~~~~~g~~~~A~~~~~ 581 (605)
.++..+..+|..|.+.+++.+|..+|-
T Consensus 132 Gdp~LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 132 GDPYLHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 478899999999999999999998774
No 268
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=71.29 E-value=17 Score=39.08 Aligned_cols=97 Identities=11% Similarity=-0.038 Sum_probs=69.3
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 007401 488 ASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAR 567 (605)
Q Consensus 488 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 567 (605)
....+..++..++..+...++...+.+......++ .....++...+..++++.|...+++.-..........|=+|.++
T Consensus 251 ~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~~~r~Alr~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~ 329 (618)
T 1qsa_A 251 IQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQST-SLIERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLL 329 (618)
T ss_dssp HHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCH-HHHHHHHHHHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCChHHHHHHHhccccCCCh-HHHHHHHHHHHHCCCHHHHHHHHHHccccccccHhHHHHHHHHH
Confidence 34455556666666664667777788766544433 33444444456779999999999776554445677888899999
Q ss_pred HHccCHHHHHHHHHHHHH
Q 007401 568 EALFCYNEALQDFKHAMV 585 (605)
Q Consensus 568 ~~~g~~~~A~~~~~~al~ 585 (605)
..+|+.++|...|+++.+
T Consensus 330 ~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 330 LERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHTTCHHHHHHHHHHHHT
T ss_pred HHcCCHHHHHHHHHHHhc
Confidence 999999999999999875
No 269
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=71.27 E-value=22 Score=41.55 Aligned_cols=92 Identities=17% Similarity=0.005 Sum_probs=69.4
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---C------------------
Q 007401 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISL---D------------------ 553 (605)
Q Consensus 495 ~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~---~------------------ 553 (605)
+...+.+.+.++-+.+ .+...+.++...+.+|.+++..|++++|.++|+++-.- +
T Consensus 818 l~~~l~~~~~~~~~~~----l~~~~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~ 893 (1139)
T 4fhn_B 818 LVEKLFLFKQYNACMQ----LIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYH 893 (1139)
T ss_dssp HHHHHHHHSCTTHHHH----HHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTT
T ss_pred HHHHHHHhhhHHHHHH----HhhhccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhccccccccccc
Confidence 3445667777766544 45567888888899999999999999999999886321 1
Q ss_pred --CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC
Q 007401 554 --KKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQN 590 (605)
Q Consensus 554 --p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 590 (605)
...+..|+.....+.+.+.++.+++..+.|++..+.+
T Consensus 894 ~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~ 932 (1139)
T 4fhn_B 894 HQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETD 932 (1139)
T ss_dssp SCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSC
T ss_pred ccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCC
Confidence 1123456667778889999999999999999887533
No 270
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=70.95 E-value=7.6 Score=29.84 Aligned_cols=32 Identities=6% Similarity=0.226 Sum_probs=26.5
Q ss_pred hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q 007401 486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIK 517 (605)
Q Consensus 486 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~ 517 (605)
.+.+..+-..++.+.+.|+|++||++.+++..
T Consensus 12 Ln~AH~~~RrAe~ll~~gkydeAIech~kAa~ 43 (97)
T 2crb_A 12 LNLAHQQSRRADRLLAAGKYEEAISCHRKATT 43 (97)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhhhhHhhhHHHHHHhcCCHHHHHHHHHHHHH
Confidence 45677788889999999999999998887764
No 271
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=68.52 E-value=8.5 Score=29.26 Aligned_cols=32 Identities=19% Similarity=0.195 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Q 007401 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKL 518 (605)
Q Consensus 487 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~ 518 (605)
+.+..+...|...-+.|+|++|+.+|.++++.
T Consensus 17 ~~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie~ 48 (83)
T 2w2u_A 17 EMARKYAINAVKADKEGNAEEAITNYKKAIEV 48 (83)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 45666777888888888988888888888763
No 272
>3u84_A Menin; MLL, JUND, ledgf, TPR, transglutaminase-like, transcription, epigenetics, cancer; 2.50A {Homo sapiens} PDB: 3u85_A 3u86_A 3u88_A*
Probab=67.20 E-value=84 Score=31.46 Aligned_cols=105 Identities=11% Similarity=0.048 Sum_probs=64.4
Q ss_pred CCCChHHHHHHHHHHHHHHHCCC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----C
Q 007401 482 TNGSIDASELLKEKGNAAFKGKQ---WNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISL-----D 553 (605)
Q Consensus 482 ~~~~~~~a~~~~~~g~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-----~ 553 (605)
..+..+.++..-++=+.++..|. |.-|+..+-..-+..|..- + ..++..|.+|+.. .
T Consensus 250 ~tds~el~~LQq~LLWlLyd~GhL~rYPmALgnLgDLEe~~pt~g--------------r-~~~~~L~~~AI~sa~~~Y~ 314 (550)
T 3u84_A 250 HTDSLELLQLQQKLLWLLYDLGHLERYPMALGNLADLEELEPTPG--------------R-PDPLTLYHKGIASAKTYYR 314 (550)
T ss_dssp SCBCHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHSCCTT--------------C-CCHHHHHHHHHHHHHHHST
T ss_pred cccHHHHHHHHHHHHHHHHhccchhhCchhhcchhhHhhcCCCCC--------------C-CCHHHHHHHHHHHHHHHhc
Confidence 34455666666777777777764 5555555555555444321 0 1134444444432 3
Q ss_pred CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHH
Q 007401 554 KKNVKAYLRRGTAREALFCYNEALQDFKHAMVL------EPQNKAANLAEKRLR 601 (605)
Q Consensus 554 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~~~~~~ 601 (605)
..+...|.++|-.+++.+++.+|+.++..+-.. ..+|.+++..+-++.
T Consensus 315 n~HvYPYtYlgGy~yR~~~~reAl~~WA~Aa~Vi~~YNY~reDeEIYKEf~eIA 368 (550)
T 3u84_A 315 DEHIYPYMYLAGYHCRNRNVREALQAWADTATVIQDYNYCREDEEIYKEFFEVA 368 (550)
T ss_dssp TCCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCCCGGGHHHHHHHHHHH
T ss_pred cCCccceeecchhhhhcchHHHHHHHHHHHHHHHHHcCCCcchHHHHHHHHHHH
Confidence 346678888888999999999999988887544 245666666655543
No 273
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=67.17 E-value=34 Score=29.58 Aligned_cols=62 Identities=5% Similarity=0.090 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC---HHHHHHH------HHHHHHcCCHHHHHHHHHHHHhc
Q 007401 491 LLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTS---ATYYSNR------AAAYLELGCFQQAEEDCSKTISL 552 (605)
Q Consensus 491 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~l------a~~~~~~~~~~~A~~~~~~al~~ 552 (605)
.-+..|..+|..|+|-+|-+.++.+.+..+.. ...|..+ |..+++.|+...|...+.+++..
T Consensus 34 ~~~~~~i~lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~~ 104 (161)
T 2ijq_A 34 RAVVHGVRLYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQY 104 (161)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 34556888999999999999999998876543 2333333 33556789999999999999873
No 274
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=65.75 E-value=10 Score=28.78 Aligned_cols=30 Identities=23% Similarity=0.240 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q 007401 488 ASELLKEKGNAAFKGKQWNKAVNYYSEAIK 517 (605)
Q Consensus 488 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~ 517 (605)
.+..+...|...-+.|+|++|+.+|.++++
T Consensus 10 ~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie 39 (83)
T 2v6y_A 10 MARKYAILAVKADKEGKVEDAITYYKKAIE 39 (83)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 455667777788888888888888888776
No 275
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=64.35 E-value=13 Score=38.05 Aligned_cols=65 Identities=14% Similarity=0.066 Sum_probs=56.1
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC---CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q 007401 522 SATYYSNRAAAYLELGCFQQAEEDCSKTISLDK---KNVKAYLRRGTAREALFCYNEALQDFKHAMVL 586 (605)
Q Consensus 522 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 586 (605)
-..++..+|..|+..|++++|.+.|.++..... .....++....++...+++..+...++++..+
T Consensus 130 ~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~ 197 (429)
T 4b4t_R 130 QAQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSM 197 (429)
T ss_dssp CSSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 356788999999999999999999999886543 23578889999999999999999999999765
No 276
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=61.69 E-value=30 Score=29.08 Aligned_cols=51 Identities=20% Similarity=0.046 Sum_probs=23.1
Q ss_pred HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 007401 500 FKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTI 550 (605)
Q Consensus 500 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al 550 (605)
..+|+-++--+.+...+...+-+++.++.+|.+|.+.|+..+|.+.+.+|=
T Consensus 102 v~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC 152 (172)
T 1wy6_A 102 VIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEAC 152 (172)
T ss_dssp HHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHH
Confidence 334444444444444334333445555555555555555555554444443
No 277
>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}
Probab=57.62 E-value=96 Score=30.45 Aligned_cols=102 Identities=17% Similarity=0.133 Sum_probs=54.6
Q ss_pred CChHHHHHHHHHHHHHHHCCC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCC
Q 007401 484 GSIDASELLKEKGNAAFKGKQ---WNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISL-----DKK 555 (605)
Q Consensus 484 ~~~~~a~~~~~~g~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-----~p~ 555 (605)
+..+.++..-++=+.++..|. |.-|+..+-..-++.|.. ....++..|.+|+.. +..
T Consensus 230 Ds~El~~LQq~LLWLLyD~GhL~rYPmALgnLgDLEe~~pt~---------------gr~~~l~L~~~AI~sa~~yY~n~ 294 (472)
T 3re2_A 230 DSIQLSQLQQELLWLLYDMGHIKTYPMAIANLGDLEEISPTP---------------GRPPAEELFKEAITVAKREYSDH 294 (472)
T ss_dssp ECHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHSCCT---------------TSCCHHHHHHHHHHHHHHHSTTC
T ss_pred chHHHHHHHHHHHHHHHhccchhhCchhhcchhhHHhcCCCC---------------CCCCHHHHHHHHHHHHHHHhccC
Confidence 344555555666666666653 444444444443333321 111134444444432 234
Q ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHHh------CCCCHHHHHHHHHH
Q 007401 556 NVKAYLRRGTAREALFCYNEALQDFKHAMVL------EPQNKAANLAEKRL 600 (605)
Q Consensus 556 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~~~~~ 600 (605)
+...|.++|-.+++.+++.+|+.++..+-.. ..+|.+++..+-.+
T Consensus 295 HvYPYtylgGy~yR~~~~reAl~~WA~Aa~Vi~~YNY~reDeEIYKEf~eI 345 (472)
T 3re2_A 295 HIYPYTYLGGYYYRKKKYYEAIASWVDAGYVAGKYNYSKDDEEMYKEFHEI 345 (472)
T ss_dssp CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCCCGGGHHHHHHHHHH
T ss_pred CccchhhhhhhhhhcchHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHH
Confidence 5567777777888888888888877776543 23455555554443
No 278
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=57.54 E-value=17 Score=27.69 Aligned_cols=31 Identities=19% Similarity=0.282 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Q 007401 488 ASELLKEKGNAAFKGKQWNKAVNYYSEAIKL 518 (605)
Q Consensus 488 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~ 518 (605)
.+..+...|..+-..|+|++|+.+|.++++.
T Consensus 15 ~A~~lv~~Ave~D~~g~y~eAl~lY~~Aie~ 45 (86)
T 4a5x_A 15 AAATVLKRAVELDSESRYPQALVCYQEGIDL 45 (86)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4566777788888888888888888888763
No 279
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=57.15 E-value=27 Score=25.71 Aligned_cols=34 Identities=18% Similarity=0.283 Sum_probs=24.7
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHH
Q 007401 492 LKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATY 525 (605)
Q Consensus 492 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 525 (605)
...+|..+...|++++|+.+|-+|+...|+=...
T Consensus 20 eV~~GE~L~~~g~~~~~~~hf~nAl~Vc~qP~~L 53 (73)
T 3ax2_A 20 EIQLGEELLAQGDYEKGVDHLTNAIAVCGQPQQL 53 (73)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHcCCHHHH
Confidence 3457778888888888888888888877665443
No 280
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=56.26 E-value=18 Score=28.05 Aligned_cols=33 Identities=15% Similarity=0.228 Sum_probs=25.5
Q ss_pred hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Q 007401 486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKL 518 (605)
Q Consensus 486 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~ 518 (605)
.+.+..+...|...-..|+|++|+.+|.++++.
T Consensus 12 l~~Ai~lv~~Ave~D~~g~y~eAl~~Y~~Aie~ 44 (93)
T 1wfd_A 12 STAAVAVLKRAVELDAESRYQQALVCYQEGIDM 44 (93)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 345667777888888888888888888887763
No 281
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=56.13 E-value=19 Score=27.37 Aligned_cols=33 Identities=15% Similarity=0.164 Sum_probs=25.8
Q ss_pred hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Q 007401 486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKL 518 (605)
Q Consensus 486 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~ 518 (605)
...+..+...|...-..|+|++|+.+|.++++.
T Consensus 10 l~~A~~l~~~Av~~D~~g~y~eAl~~Y~~aie~ 42 (85)
T 2v6x_A 10 LTKGIELVQKAIDLDTATQYEEAYTAYYNGLDY 42 (85)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 345667777888888888988888888888763
No 282
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=55.48 E-value=31 Score=25.35 Aligned_cols=28 Identities=11% Similarity=0.243 Sum_probs=13.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 007401 528 NRAAAYLELGCFQQAEEDCSKTISLDKK 555 (605)
Q Consensus 528 ~la~~~~~~~~~~~A~~~~~~al~~~p~ 555 (605)
.+|..+...|++++|..+|-+|++..|+
T Consensus 22 ~~GE~L~~~g~~~~~~~hf~nAl~Vc~q 49 (73)
T 3ax2_A 22 QLGEELLAQGDYEKGVDHLTNAIAVCGQ 49 (73)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCSS
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHcCC
Confidence 3444444555555555555555555443
No 283
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=54.37 E-value=24 Score=36.33 Aligned_cols=63 Identities=11% Similarity=-0.030 Sum_probs=38.3
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCC----------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCC
Q 007401 494 EKGNAAFKGKQWNKAVNYYSEAIKLNG----------TSATYYSNRAAAYLELGCFQQAEEDCSKTISL-DKKN 556 (605)
Q Consensus 494 ~~g~~~~~~g~~~~A~~~~~~al~~~p----------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-~p~~ 556 (605)
++-..||+.++...+...++..-.... +-...+|.+|..++..++|.+|.+++..|++. .|.+
T Consensus 181 ~L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~lcp~~ 254 (455)
T 3t5v_B 181 KLNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQIEYRYLLGRYYLLNSQVHNAFVQFNEAFQSLLNLP 254 (455)
T ss_dssp HHHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccceEeeeHHHHHHHHHHccHHHHHHHHHHHHHhcCCcc
Confidence 344667777777776666654332221 11455666777777777777777777777766 5543
No 284
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=53.91 E-value=60 Score=27.34 Aligned_cols=53 Identities=11% Similarity=-0.050 Sum_probs=41.6
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q 007401 534 LELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVL 586 (605)
Q Consensus 534 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 586 (605)
...|.-++-.+.+...+.-++-++..++.+|.+|.+.|+..+|.+.+.+|-+.
T Consensus 102 v~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~k 154 (172)
T 1wy6_A 102 VIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKK 154 (172)
T ss_dssp HHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 35666666666666655656667999999999999999999999999999874
No 285
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=52.23 E-value=18 Score=29.46 Aligned_cols=31 Identities=19% Similarity=0.294 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q 007401 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIK 517 (605)
Q Consensus 487 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~ 517 (605)
+.+..+...|...-..|+|++|+.+|.++++
T Consensus 16 ~kAi~lv~~Ave~D~ag~y~eAl~lY~~Aie 46 (117)
T 2cpt_A 16 QKAIDLASKAAQEDKAGNYEEALQLYQHAVQ 46 (117)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 4556666777777777888888888877766
No 286
>4gq4_A Menin; tumor suppressor, nucleus, transcription-transcription inhib complex; HET: 0RT EPE PE4; 1.27A {Homo sapiens} PDB: 4gq3_A* 4gpq_A* 4gq6_A*
Probab=51.12 E-value=1.8e+02 Score=29.18 Aligned_cols=29 Identities=17% Similarity=0.122 Sum_probs=15.6
Q ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 007401 556 NVKAYLRRGTAREALFCYNEALQDFKHAM 584 (605)
Q Consensus 556 ~~~~~~~la~~~~~~g~~~~A~~~~~~al 584 (605)
....|.++|-.+++.++|.+|+.++..+-
T Consensus 302 hvYPYtYlgG~~~R~~~~~eAl~~wa~aa 330 (489)
T 4gq4_A 302 HIYPYMYLAGYHCRNRNVREALQAWADTA 330 (489)
T ss_dssp CSHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cccceeecchHHHHhhhHHHHHHHhhhhh
Confidence 34455555555555555555555555543
No 287
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=50.06 E-value=26 Score=26.88 Aligned_cols=28 Identities=29% Similarity=0.250 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 007401 523 ATYYSNRAAAYLELGCFQQAEEDCSKTI 550 (605)
Q Consensus 523 ~~~~~~la~~~~~~~~~~~A~~~~~~al 550 (605)
+..+..++..+...|.|++||++.++|.
T Consensus 15 AH~~~RrAe~ll~~gkydeAIech~kAa 42 (97)
T 2crb_A 15 AHQQSRRADRLLAAGKYEEAISCHRKAT 42 (97)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hhHhhhHHHHHHhcCCHHHHHHHHHHHH
Confidence 5566677777777777777777776654
No 288
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=49.93 E-value=21 Score=27.06 Aligned_cols=18 Identities=22% Similarity=0.182 Sum_probs=10.3
Q ss_pred HHcCCHHHHHHHHHHHHh
Q 007401 534 LELGCFQQAEEDCSKTIS 551 (605)
Q Consensus 534 ~~~~~~~~A~~~~~~al~ 551 (605)
-+.|+|++|+.+|.++++
T Consensus 30 D~~g~y~eAl~lY~~aie 47 (83)
T 2w2u_A 30 DKEGNAEEAITNYKKAIE 47 (83)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHH
Confidence 355666666666655543
No 289
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=49.10 E-value=32 Score=31.05 Aligned_cols=82 Identities=15% Similarity=-0.010 Sum_probs=55.1
Q ss_pred hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHH-----HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHH
Q 007401 486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATY-----YSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAY 560 (605)
Q Consensus 486 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~-----~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 560 (605)
.+.+...+-+|..++.+++|.+|.+.+.+|+...|..... +..+--+.+.+|++..- +.+++ .+. ..|
T Consensus 11 ~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~~~~~k~~IL~yLIp~~Ll~G~iP~~-~ll~~----~~~--~~y 83 (203)
T 3t5x_A 11 AQRVTYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRSSQKNKRMILIYLLPVKMLLGHMPTV-ELLKK----YHL--MQF 83 (203)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTTCEECH-HHHHH----TTC--GGG
T ss_pred HHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHcCCCCCH-HHhhh----Cch--hHH
Confidence 4567889999999999999999999999999998876433 33344444567876542 23332 111 245
Q ss_pred HHHHHHHHHccCHHH
Q 007401 561 LRRGTAREALFCYNE 575 (605)
Q Consensus 561 ~~la~~~~~~g~~~~ 575 (605)
..+..++ +.||...
T Consensus 84 ~~L~~Av-r~Gdl~~ 97 (203)
T 3t5x_A 84 AEVTRAV-SEGNLLL 97 (203)
T ss_dssp HHHHHHH-HHTCHHH
T ss_pred HHHHHHH-HhCCHHH
Confidence 6666554 6777543
No 290
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=48.86 E-value=22 Score=26.91 Aligned_cols=31 Identities=26% Similarity=0.172 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 007401 506 NKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTIS 551 (605)
Q Consensus 506 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 551 (605)
++|+++..+|++. -+.|+|++|+.+|.++++
T Consensus 9 ~~Ai~lv~~Ave~---------------D~~g~y~eAl~lY~~aie 39 (83)
T 2v6y_A 9 DMARKYAILAVKA---------------DKEGKVEDAITYYKKAIE 39 (83)
T ss_dssp HHHHHHHHHHHHH---------------HHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH---------------HHhccHHHHHHHHHHHHH
Confidence 3566666666554 355666666666655543
No 291
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=47.96 E-value=41 Score=30.27 Aligned_cols=35 Identities=23% Similarity=0.076 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH
Q 007401 523 ATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNV 557 (605)
Q Consensus 523 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~ 557 (605)
...++.+|..++..++|.+|.+++.+|++..|...
T Consensus 14 v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~~ 48 (203)
T 3t5x_A 14 VTYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRSS 48 (203)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTTC
T ss_pred HHHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHhH
Confidence 45667778888888888888888888887766543
No 292
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=45.94 E-value=1e+02 Score=26.49 Aligned_cols=60 Identities=5% Similarity=0.011 Sum_probs=46.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCC------HHHHHH-HH--HHHHHccCHHHHHHHHHHHHHh
Q 007401 527 SNRAAAYLELGCFQQAEEDCSKTISLDKKN------VKAYLR-RG--TAREALFCYNEALQDFKHAMVL 586 (605)
Q Consensus 527 ~~la~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~-la--~~~~~~g~~~~A~~~~~~al~~ 586 (605)
+..+..++..++|-+|-+.++.+.+..+.. .+.+.+ ++ ..+.+.|+.+-|...+.+++..
T Consensus 36 ~~~~i~lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~~ 104 (161)
T 2ijq_A 36 VVHGVRLYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQY 104 (161)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 456777788899999999999999887654 233333 33 3456789999999999999874
No 293
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*
Probab=44.78 E-value=34 Score=37.18 Aligned_cols=49 Identities=18% Similarity=0.198 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 007401 489 SELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELG 537 (605)
Q Consensus 489 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 537 (605)
++.....|..++..|+|.-|.+..+.++..+|+|..+...++.+|.+++
T Consensus 449 ~~~~~~~a~~~~~~g~~~wa~~l~~~~~~~~p~~~~a~~l~a~~~~~l~ 497 (658)
T 2cfu_A 449 AERLLEQARASYARGEYRWVVEVVNRLVFAEPDNRAARELQADALEQLG 497 (658)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence 5667778888888899999999999988889998888888888776665
No 294
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=43.39 E-value=1.7e+02 Score=33.50 Aligned_cols=63 Identities=6% Similarity=-0.202 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHh-----cCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q 007401 523 ATYYSNRAAAYLELGCFQQAEEDCSKTIS-----LDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVL 586 (605)
Q Consensus 523 ~~~~~~la~~~~~~~~~~~A~~~~~~al~-----~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 586 (605)
...|..+-..|.+.|+.++|.+.++...+ ..| |...|..+-..|.+.|+.++|.+.|++..+.
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~P-dvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~ 194 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLL-TLDMYNAVMLGWARQGAFKELVYVLFMVKDA 194 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCC-CHhHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 45677888899999999999999976543 244 7889999999999999999999999998765
No 295
>2vkj_A TM1634; membrane protein, TPR motif joint center for structural GENO JCSG, structural genomics; 1.65A {Thermotoga maritima} PDB: 2vko_A*
Probab=42.52 E-value=57 Score=24.77 Aligned_cols=33 Identities=18% Similarity=0.467 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Q 007401 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLN 519 (605)
Q Consensus 487 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~ 519 (605)
..++.+...|..+++.++|.+|+..|+++....
T Consensus 51 ~~~r~~i~eak~~y~~~ny~ea~~l~~k~~n~t 83 (106)
T 2vkj_A 51 KKARSLIAEGKDLFETANYGEALVFFEKALNLS 83 (106)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHHhcchhHHHHHHHHHHccc
Confidence 567888889999999999999999999987654
No 296
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=41.83 E-value=45 Score=34.29 Aligned_cols=36 Identities=17% Similarity=0.056 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCC
Q 007401 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKL-NGTS 522 (605)
Q Consensus 487 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~-~p~~ 522 (605)
+.+..++-+|..++.+++|.+|.+.+.+|+.. .|.+
T Consensus 218 q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~lcp~~ 254 (455)
T 3t5v_B 218 QQIEYRYLLGRYYLLNSQVHNAFVQFNEAFQSLLNLP 254 (455)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCC
T ss_pred ceEeeeHHHHHHHHHHccHHHHHHHHHHHHHhcCCcc
Confidence 56788899999999999999999999999998 7765
No 297
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*
Probab=41.70 E-value=41 Score=36.55 Aligned_cols=51 Identities=20% Similarity=0.071 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCH
Q 007401 523 ATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREALFCY 573 (605)
Q Consensus 523 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 573 (605)
.+....+|...+..|+|..|.+.++.++..+|+|.++...++.+|.++|..
T Consensus 449 ~~~~~~~a~~~~~~g~~~wa~~l~~~~~~~~p~~~~a~~l~a~~~~~l~~~ 499 (658)
T 2cfu_A 449 AERLLEQARASYARGEYRWVVEVVNRLVFAEPDNRAARELQADALEQLGYQ 499 (658)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHh
Confidence 455666777788899999999999999999999999999999999998854
No 298
>2cwy_A Hypothetical protein TTHA0068; structural genomics, conserved hypothetical protein, NPPSFA; 1.85A {Thermus thermophilus} SCOP: a.246.2.1 PDB: 2cxd_A
Probab=40.76 E-value=62 Score=25.04 Aligned_cols=56 Identities=9% Similarity=-0.084 Sum_probs=36.2
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCC-HH---HHHHH--HHHHHHcCCHHHHHHHHHHHHh
Q 007401 494 EKGNAAFKGKQWNKAVNYYSEAIKLNGTS-AT---YYSNR--AAAYLELGCFQQAEEDCSKTIS 551 (605)
Q Consensus 494 ~~g~~~~~~g~~~~A~~~~~~al~~~p~~-~~---~~~~l--a~~~~~~~~~~~A~~~~~~al~ 551 (605)
..|..+|..|+|-+|-+.++......+.. -. .+..+ |..+...|+. |...+.+++.
T Consensus 6 ~~~~~lfn~g~~~eaHEvlE~~W~~~~~~~~~~~qGLIq~Ava~~h~~~gn~--a~~ll~~a~~ 67 (94)
T 2cwy_A 6 EEVLGLWRAGRYYEVHEVLEPYWLKATGEERRLLQGVILLAAALHQRRLGRP--GLRNLRKAEA 67 (94)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHTTCC--CHHHHHHHHH
T ss_pred HHHHHHHhCCChHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHHHcCcH--HHHHHHHHHH
Confidence 45777888889988888888888776542 11 22222 3334456666 7777777765
No 299
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=40.63 E-value=1.1e+02 Score=32.78 Aligned_cols=114 Identities=6% Similarity=-0.155 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-H---HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 007401 491 LLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSAT-Y---YSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTA 566 (605)
Q Consensus 491 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~-~---~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~ 566 (605)
.....+...+...+.++|...+.+......-+.. . +..++.-++..+...++...+.+......++....+..+.
T Consensus 216 ~~~~~~~~rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~r~- 294 (618)
T 1qsa_A 216 QMAAVAFASVARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQSTSLIERRVRM- 294 (618)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCHHHHHHHHHH-
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccCCChHHHHHHHHH-
Confidence 3445556666677999999999887654333322 2 2222323333343557777777766554444333344444
Q ss_pred HHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhhC
Q 007401 567 REALFCYNEALQDFKHAMVLEPQNKAANLAEKRLRKLIG 605 (605)
Q Consensus 567 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g 605 (605)
..+.|+++.|...|++.-........+.+..++.+..+|
T Consensus 295 Alr~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g 333 (618)
T 1qsa_A 295 ALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERG 333 (618)
T ss_dssp HHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTT
T ss_pred HHHCCCHHHHHHHHHHccccccccHhHHHHHHHHHHHcC
Confidence 446799999999998765433345777777777766544
No 300
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=39.68 E-value=31 Score=25.70 Aligned_cols=31 Identities=10% Similarity=0.020 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Q 007401 488 ASELLKEKGNAAFKGKQWNKAVNYYSEAIKL 518 (605)
Q Consensus 488 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~ 518 (605)
..-....+|..+...|+|+.|+.+|+.+++.
T Consensus 11 ~i~e~~k~ARe~Al~GnYdta~~yY~g~~~q 41 (78)
T 2rpa_A 11 MIVENVKLAREYALLGNYDSAMVYYQGVLDQ 41 (78)
T ss_dssp HHHHHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcChHHHHHHHHHHHHH
Confidence 3445566788888889999999999988863
No 301
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=38.30 E-value=66 Score=36.64 Aligned_cols=67 Identities=18% Similarity=0.134 Sum_probs=51.8
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH-hCC--------------------C--CHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 007401 492 LKEKGNAAFKGKQWNKAVNYYSEAIK-LNG--------------------T--SATYYSNRAAAYLELGCFQQAEEDCSK 548 (605)
Q Consensus 492 ~~~~g~~~~~~g~~~~A~~~~~~al~-~~p--------------------~--~~~~~~~la~~~~~~~~~~~A~~~~~~ 548 (605)
-+-+|.+++..|++++|.++|+++-. +.. + ...+|.....++.+.+-|+.+++..+.
T Consensus 843 ~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~~~e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~l 922 (950)
T 4gq2_M 843 VYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLL 922 (950)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHHHTTTCSHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhhccCcccccchhHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 37789999999999999999998752 110 1 134677888888889999999999999
Q ss_pred HHhc-CCCCHH
Q 007401 549 TISL-DKKNVK 558 (605)
Q Consensus 549 al~~-~p~~~~ 558 (605)
||+. ++++..
T Consensus 923 AI~~~~~dd~~ 933 (950)
T 4gq2_M 923 ADASKETDDED 933 (950)
T ss_dssp HHHTCCSCCHH
T ss_pred HHhhcccCCcc
Confidence 9974 455554
No 302
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=36.76 E-value=1.5e+02 Score=30.27 Aligned_cols=70 Identities=10% Similarity=0.074 Sum_probs=56.7
Q ss_pred CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 007401 483 NGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIK---LNGTS----ATYYSNRAAAYLELGCFQQAEEDCSKTISL 552 (605)
Q Consensus 483 ~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~---~~p~~----~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 552 (605)
.+.....+.+..+...++..++|.+|...++++-. ..+.. ...+...|..+...++|.+|.++|..++..
T Consensus 171 ~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~ 247 (445)
T 4b4t_P 171 MEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQT 247 (445)
T ss_dssp SCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 34456789999999999999999999999999742 23333 346678899999999999999999998764
No 303
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=35.11 E-value=3.2e+02 Score=26.41 Aligned_cols=103 Identities=17% Similarity=0.057 Sum_probs=56.8
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCC-----CC---HHH--HHHHHHHHH-----Hc-------CCHHHHHHH--HH
Q 007401 492 LKEKGNAAFKGKQWNKAVNYYSEAIKLNG-----TS---ATY--YSNRAAAYL-----EL-------GCFQQAEED--CS 547 (605)
Q Consensus 492 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p-----~~---~~~--~~~la~~~~-----~~-------~~~~~A~~~--~~ 547 (605)
..+.|..++..|++++|+..|+.++..-| +. .++ +..++.-|. ++ .+....++. |-
T Consensus 117 ~Lk~gyk~~t~gKf~eAl~~Fr~iL~~i~l~~v~~~~e~~e~~eli~icrEYilal~iEl~Rr~l~~~~~kR~lELAAYF 196 (325)
T 3mv2_A 117 KMNEGYKNFKLNKPDIAIECFREAIYRITLLMVDDAEDEKLAHKILETAREYILGLSIELERRSLKEGNTVRMLELAAYF 196 (325)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCCBCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHHG
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHhheeeeccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHh
Confidence 34458888999999999999999987532 11 122 111111111 11 111111110 10
Q ss_pred HHHhcCCCCHHHHHHHHH-HHHHccCHHHHHHHHHHHHHhCCCCHHHH
Q 007401 548 KTISLDKKNVKAYLRRGT-AREALFCYNEALQDFKHAMVLEPQNKAAN 594 (605)
Q Consensus 548 ~al~~~p~~~~~~~~la~-~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 594 (605)
.-.++.|.+...-++.|. ..++.++|..|....++.+++.|....+.
T Consensus 197 T~c~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~~~a~ 244 (325)
T 3mv2_A 197 TKAKLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKIISSGPRAE 244 (325)
T ss_dssp GGSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSHHHH
T ss_pred ccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCHHHHH
Confidence 011222322223333333 46789999999999999999998655443
No 304
>2pmr_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein struct initiative; 1.32A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.8.11.1
Probab=34.53 E-value=47 Score=25.32 Aligned_cols=29 Identities=0% Similarity=-0.023 Sum_probs=21.9
Q ss_pred hHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Q 007401 486 IDASELLKEKGNAAFKGKQWNKAVNYYSE 514 (605)
Q Consensus 486 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~ 514 (605)
.+.+..|++-|..+++.||+..|+.++.=
T Consensus 36 l~mA~~Y~~Da~~fl~kGD~v~Ala~isY 64 (87)
T 2pmr_A 36 VERALNYRDDSVYYLEKGDHITSFGCITY 64 (87)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 45677788888888888888888876543
No 305
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=34.29 E-value=48 Score=25.75 Aligned_cols=30 Identities=20% Similarity=0.354 Sum_probs=24.7
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Q 007401 493 KEKGNAAFKGKQWNKAVNYYSEAIKLNGTS 522 (605)
Q Consensus 493 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~~ 522 (605)
..+|..+...|+++.|+.+|-+|+...|+=
T Consensus 24 V~lGE~L~~~g~~e~av~Hf~nAl~Vc~qP 53 (95)
T 1om2_A 24 IQLGEELLAQGDYEKGVDHLTNAIAVCGQP 53 (95)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHSCH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHcCCH
Confidence 358888889999999999888888877653
No 306
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=32.19 E-value=58 Score=25.25 Aligned_cols=29 Identities=10% Similarity=0.214 Sum_probs=21.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 007401 527 SNRAAAYLELGCFQQAEEDCSKTISLDKK 555 (605)
Q Consensus 527 ~~la~~~~~~~~~~~A~~~~~~al~~~p~ 555 (605)
..+|..+...|+++.|+.+|-+|+...|+
T Consensus 24 V~lGE~L~~~g~~e~av~Hf~nAl~Vc~q 52 (95)
T 1om2_A 24 IQLGEELLAQGDYEKGVDHLTNAIAVCGQ 52 (95)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHcCC
Confidence 45677777777777777777777777764
No 307
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=30.19 E-value=3e+02 Score=24.58 Aligned_cols=72 Identities=7% Similarity=-0.024 Sum_probs=58.4
Q ss_pred CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 007401 483 NGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKL--NGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKK 555 (605)
Q Consensus 483 ~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~ 555 (605)
.+.++....|...+..+ ..++..++.+.|.-+... .-..+..|...|..+...|+|.+|.+.|+..++.+-.
T Consensus 74 kND~RYLklWl~Ya~~~-~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~ 147 (202)
T 3esl_A 74 RNDPRFLKIWIWYINLF-LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCR 147 (202)
T ss_dssp TTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred cCCHHHHHHHHHHHHhh-cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc
Confidence 34678888898888765 344477888888887764 5677899999999999999999999999999998754
No 308
>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}
Probab=29.84 E-value=1.2e+02 Score=29.74 Aligned_cols=63 Identities=13% Similarity=0.074 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHCC--CHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 007401 489 SELLKEKGNAAFKGK--QWNKAVNYYSEAIKL-----NGTSATYYSNRAAAYLELGCFQQAEEDCSKTIS 551 (605)
Q Consensus 489 a~~~~~~g~~~~~~g--~~~~A~~~~~~al~~-----~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 551 (605)
.-++-++|+.--..- ....++..|.++|.. .......|..+|.+|++.+++.+|++.+..|-.
T Consensus 255 PmALgnLgDLEe~~pt~gr~~~l~L~~~AI~sa~~yY~n~HvYPYtylgGy~yR~~~~reAl~~WA~Aa~ 324 (472)
T 3re2_A 255 PMAIANLGDLEEISPTPGRPPAEELFKEAITVAKREYSDHHIYPYTYLGGYYYRKKKYYEAIASWVDAGY 324 (472)
T ss_dssp HHHHHHHHHHHHHSCCTTSCCHHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred chhhcchhhHHhcCCCCCCCCHHHHHHHHHHHHHHHhccCCccchhhhhhhhhhcchHHHHHHHHHHHHH
Confidence 445666666654433 333488889998864 345567788899999999999999999887643
No 309
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=29.84 E-value=2.7e+02 Score=23.94 Aligned_cols=67 Identities=16% Similarity=0.200 Sum_probs=52.6
Q ss_pred CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 007401 483 NGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIK--LNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKK 555 (605)
Q Consensus 483 ~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~ 555 (605)
.+.+.....|...+... + ++.+.|..+.. +.-..+..|...|..+-..+++.+|.+.|+.+++.+..
T Consensus 60 knD~RyLklWl~ya~~~---~---~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~ 128 (164)
T 2wvi_A 60 YSDPRFLNLWLKLGRLC---N---EPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAE 128 (164)
T ss_dssp TTCHHHHHHHHHHHHHC---S---CHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred ccCHHHHHHHHHHHHhc---C---CHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Confidence 34677888888888663 3 35666666655 45677899999999999999999999999999998754
No 310
>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=28.46 E-value=4.1e+02 Score=25.60 Aligned_cols=99 Identities=13% Similarity=0.051 Sum_probs=56.4
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCC----CC----HHH--H------HHHHHHHH-HcCCH-----HHHHHHHHHH-
Q 007401 493 KEKGNAAFKGKQWNKAVNYYSEAIKLNG----TS----ATY--Y------SNRAAAYL-ELGCF-----QQAEEDCSKT- 549 (605)
Q Consensus 493 ~~~g~~~~~~g~~~~A~~~~~~al~~~p----~~----~~~--~------~~la~~~~-~~~~~-----~~A~~~~~~a- 549 (605)
.+.|..++..|++++|+..|+.++..-| ++ .++ + |-+|...- ...+. ++-.+.++-+
T Consensus 106 Lk~gyk~~t~gKf~eAl~~Fr~iL~~i~l~~v~~~~e~~e~~eli~icreYilal~iEl~Rr~l~~~~~~~~kR~lELAA 185 (320)
T 3mkr_B 106 LQLCYQLTTVGKFEEAVEKFRSILLSVPLLVVDNKQEIAEAQQLITICREYIVGLSMETERKKLPKETLEQQKRICEMAA 185 (320)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHGGGCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCSHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHhhheeeccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCchhHHHHHHHHH
Confidence 4558889999999999999999987643 22 122 1 11221110 11111 1211111111
Q ss_pred ----HhcCCCCHHHHHHHHH-HHHHccCHHHHHHHHHHHHHhCCCCH
Q 007401 550 ----ISLDKKNVKAYLRRGT-AREALFCYNEALQDFKHAMVLEPQNK 591 (605)
Q Consensus 550 ----l~~~p~~~~~~~~la~-~~~~~g~~~~A~~~~~~al~~~p~~~ 591 (605)
.++.|.+...-++.|. ..++.++|..|...-++.|++.|...
T Consensus 186 YFT~c~Lqp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~~ 232 (320)
T 3mkr_B 186 YFTHSNLQPVHMILVLRTALNLFFKLKNFRTAAAFARRLLELGPKPE 232 (320)
T ss_dssp HHTTSCCCHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHTCCCHH
T ss_pred HhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCHH
Confidence 1223333333333333 46789999999999999999988533
No 311
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=27.87 E-value=3.3e+02 Score=24.31 Aligned_cols=100 Identities=7% Similarity=-0.111 Sum_probs=66.4
Q ss_pred HHHHHHHHHHHHHHCCCH--HH-HH-HHHHHHHHhC---------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--
Q 007401 488 ASELLKEKGNAAFKGKQW--NK-AV-NYYSEAIKLN---------GTSATYYSNRAAAYLELGCFQQAEEDCSKTISL-- 552 (605)
Q Consensus 488 ~a~~~~~~g~~~~~~g~~--~~-A~-~~~~~al~~~---------p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-- 552 (605)
....|...-...+-.|.- +. =+ ..+++++... |....+|...+..+ ..++..++.+.|......
T Consensus 32 ~w~~YIkW~ee~yP~g~~~~~s~L~~~lLErc~~~F~~~~rYkND~RYLklWl~Ya~~~-~~~~~~~p~~if~~L~~~~I 110 (202)
T 3esl_A 32 LFLDYMIWISTSYIEVDSESGQEVLRSTMERCLIYIQDMETYRNDPRFLKIWIWYINLF-LSNNFHESENTFKYMFNKGI 110 (202)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCGGGTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHhCCCCCCcchhchHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHhh-cccccCCHHHHHHHHHHCCC
Confidence 344444444455544443 11 23 5677777632 22345555666554 233477888888877654
Q ss_pred CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Q 007401 553 DKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEP 588 (605)
Q Consensus 553 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 588 (605)
.-..+..|-..|..+...|++++|.+.|+..++..-
T Consensus 111 G~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A 146 (202)
T 3esl_A 111 GTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNC 146 (202)
T ss_dssp STTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 567788888999999999999999999999998764
No 312
>2o8p_A 14-3-3 domain containing protein; signaling protein, 14-3-3, cell regulator protein, cryptospo parvum, structural genomics; HET: MSE; 1.82A {Cryptosporidium parvum} SCOP: a.118.7.1
Probab=27.82 E-value=3.5e+02 Score=24.62 Aligned_cols=65 Identities=15% Similarity=-0.018 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHH-----HCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHh
Q 007401 487 DASELLKEKGNAAF-----KGKQWNKAVNYYSEAIKL--------NGTSATYYSNRAAAYLE-LGCFQQAEEDCSKTIS 551 (605)
Q Consensus 487 ~~a~~~~~~g~~~~-----~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~-~~~~~~A~~~~~~al~ 551 (605)
..+..+...|+.|- ..|+-++|...|++|..+ +|-......|.+..|+. +++.++|.+..++|+.
T Consensus 118 skVFY~KMKGDYyRYlAE~~~g~~e~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEIln~p~~Ac~lAk~Afd 196 (227)
T 2o8p_A 118 SKFFKLKVKSDISRYKLEFGLCSLEDSKKIHQDAFTLLCEHPDKIEQLPLGFIQNLAYILSEKYGEKKQVFNMLNSLGK 196 (227)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHCGGGGGGSCHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHccccHHHHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 45667777777653 366778888999988764 23334556666666665 6788889888888865
No 313
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=26.96 E-value=3.6e+02 Score=26.71 Aligned_cols=89 Identities=10% Similarity=-0.013 Sum_probs=59.0
Q ss_pred HHHHCCCHHHHHHHHHHHHHhC---------------CCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-------C
Q 007401 498 AAFKGKQWNKAVNYYSEAIKLN---------------GTS--ATYYSNRAAAYLELGCFQQAEEDCSKTISL-------D 553 (605)
Q Consensus 498 ~~~~~g~~~~A~~~~~~al~~~---------------p~~--~~~~~~la~~~~~~~~~~~A~~~~~~al~~-------~ 553 (605)
......+.++|++.+++....- ... ..+....+..|+..++..+|...++++-.. +
T Consensus 85 ~~~~~~d~~~al~~L~~~~~~~~~~~~~~~~~~~~~~~~ea~l~i~~~i~~~yl~~~d~~~a~~~l~~~~~~l~~~~~~~ 164 (393)
T 4b4t_O 85 SLKDSKDFDESLKYLDDLKAQFQELDSKKQRNNGSKDHGDGILLIDSEIARTYLLKNDLVKARDLLDDLEKTLDKKDSIP 164 (393)
T ss_dssp HHHHTTCHHHHHHHHHHHTTTSHHHHSSCCCCCCSSSSCCSHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCCSS
T ss_pred HHhhcCCHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhccCCcc
Confidence 3445678888988888764321 011 344556788888899999999988887643 1
Q ss_pred CC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q 007401 554 KK-NVKAYLRRGTAREALFCYNEALQDFKHAMVL 586 (605)
Q Consensus 554 p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 586 (605)
|. ....|...+..|...++|.++....-.++..
T Consensus 165 ~~v~~~~y~~~~~~~~~~~~~a~~y~~~l~~l~~ 198 (393)
T 4b4t_O 165 LRITNSFYSTNSQYFKFKNDFNSFYYTSLLYLST 198 (393)
T ss_dssp SHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 21 2345555677778888888877776666653
No 314
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=26.62 E-value=1.1e+02 Score=23.53 Aligned_cols=14 Identities=29% Similarity=0.297 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHh
Q 007401 505 WNKAVNYYSEAIKL 518 (605)
Q Consensus 505 ~~~A~~~~~~al~~ 518 (605)
.++|+....+|++.
T Consensus 12 l~~Ai~lv~~Ave~ 25 (93)
T 1wfd_A 12 STAAVAVLKRAVEL 25 (93)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 45677777777665
No 315
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=26.46 E-value=94 Score=26.47 Aligned_cols=67 Identities=10% Similarity=0.024 Sum_probs=52.3
Q ss_pred CChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 007401 484 GSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKL--NGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKN 556 (605)
Q Consensus 484 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~ 556 (605)
+.++....|...+... +++.+.|.-+... .-..+..|..-|..+-..|++.+|.+.|+..++.+..-
T Consensus 66 nD~RyLklWl~ya~~~------~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 66 NDPRFISYCLKFAEYN------SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp TCHHHHHHHHHHHTTB------SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred CCHHHHHHHHHHHHhc------CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 4567778888777553 3367777777654 56778999999999999999999999999999986543
No 316
>2oo2_A Hypothetical protein AF_1782; structural genomics, unknown function, PSI-2, protein struct initiative; 1.80A {Archaeoglobus fulgidus dsm 4304} SCOP: a.8.11.1
Probab=26.43 E-value=1.5e+02 Score=22.48 Aligned_cols=31 Identities=10% Similarity=-0.050 Sum_probs=24.8
Q ss_pred ChHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q 007401 485 SIDASELLKEKGNAAFKGKQWNKAVNYYSEA 515 (605)
Q Consensus 485 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~a 515 (605)
-.+.+..|++-|..++++|++..|+.++.=+
T Consensus 31 ~l~mA~~Y~~Da~~fl~kGD~v~Ala~isYa 61 (86)
T 2oo2_A 31 FMRNIEAYISDSRYFLEKGDLVRAFECVVWA 61 (86)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3567888999999999999999998876543
No 317
>2dl1_A Spartin; SPG20, MIT, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=26.35 E-value=43 Score=27.01 Aligned_cols=44 Identities=11% Similarity=0.178 Sum_probs=25.0
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 007401 503 KQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDK 554 (605)
Q Consensus 503 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p 554 (605)
..|++|.++..++|+++. .+.-...+..|.+++..+.+++.+..
T Consensus 17 ~~h~~AF~~Is~AL~~DE--------~g~k~~Al~lYk~GI~eLe~Gl~I~~ 60 (116)
T 2dl1_A 17 EAYKKAFLFVNKGLNTDE--------LGQKEEAKNYYKQGIGHLLRGISISS 60 (116)
T ss_dssp HHHHHHHHHHHHHHHHHH--------HTCHHHHHHHHHHHHHHHHHHHSSCC
T ss_pred HHHHHHHHHHHHHhhhhh--------cCCHHHHHHHHHHHHHHHHHhccccc
Confidence 356677777777777652 23333334445555555666666554
No 318
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=26.01 E-value=3e+02 Score=23.28 Aligned_cols=48 Identities=8% Similarity=-0.058 Sum_probs=35.2
Q ss_pred HHHHHHHHHhc--CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Q 007401 542 AEEDCSKTISL--DKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQ 589 (605)
Q Consensus 542 A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 589 (605)
+.+.|...... .-..+..|-..|..+...|++++|.+.|+..++.+..
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~ 133 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAE 133 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc
Confidence 56666665543 4556777777888888888888888888888886543
No 319
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=24.99 E-value=63 Score=24.04 Aligned_cols=26 Identities=12% Similarity=0.149 Sum_probs=15.9
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHH
Q 007401 560 YLRRGTAREALFCYNEALQDFKHAMV 585 (605)
Q Consensus 560 ~~~la~~~~~~g~~~~A~~~~~~al~ 585 (605)
...+|+=|...|+|+.|+.+|+.+++
T Consensus 15 ~~k~ARe~Al~GnYdta~~yY~g~~~ 40 (78)
T 2rpa_A 15 NVKLAREYALLGNYDSAMVYYQGVLD 40 (78)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcChHHHHHHHHHHHH
Confidence 34456666666666666666666654
No 320
>2cwy_A Hypothetical protein TTHA0068; structural genomics, conserved hypothetical protein, NPPSFA; 1.85A {Thermus thermophilus} SCOP: a.246.2.1 PDB: 2cxd_A
Probab=24.84 E-value=1.6e+02 Score=22.57 Aligned_cols=56 Identities=9% Similarity=0.039 Sum_probs=40.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCH----HHHHHHHH--HHHHccCHHHHHHHHHHHHH
Q 007401 528 NRAAAYLELGCFQQAEEDCSKTISLDKKNV----KAYLRRGT--AREALFCYNEALQDFKHAMV 585 (605)
Q Consensus 528 ~la~~~~~~~~~~~A~~~~~~al~~~p~~~----~~~~~la~--~~~~~g~~~~A~~~~~~al~ 585 (605)
..|..++..++|-+|-+.++...+..++.. +.+.+++. .+.+.|+. |...+.+++.
T Consensus 6 ~~~~~lfn~g~~~eaHEvlE~~W~~~~~~~~~~~qGLIq~Ava~~h~~~gn~--a~~ll~~a~~ 67 (94)
T 2cwy_A 6 EEVLGLWRAGRYYEVHEVLEPYWLKATGEERRLLQGVILLAAALHQRRLGRP--GLRNLRKAEA 67 (94)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHTTCC--CHHHHHHHHH
T ss_pred HHHHHHHhCCChHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHHHcCcH--HHHHHHHHHH
Confidence 456777888999999999999998886432 23333443 34567777 8888988876
No 321
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=24.62 E-value=4.9e+02 Score=25.24 Aligned_cols=115 Identities=13% Similarity=0.048 Sum_probs=68.2
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHH-------HHH---------HhCCCCHHHHHHHHHH-HHHcCCHHHHHHHHHHHH
Q 007401 488 ASELLKEKGNAAFKGKQWNKAVNYYS-------EAI---------KLNGTSATYYSNRAAA-YLELGCFQQAEEDCSKTI 550 (605)
Q Consensus 488 ~a~~~~~~g~~~~~~g~~~~A~~~~~-------~al---------~~~p~~~~~~~~la~~-~~~~~~~~~A~~~~~~al 550 (605)
+.+.+..+|..+++.++|.+|..+|- +.+ +..|...+.+..++.. |+.+++...|...++...
T Consensus 135 dp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~~~~e~dlfiaRaVL~yL~l~n~~~A~~~~~~f~ 214 (336)
T 3lpz_A 135 DPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQDESHTAPLYCARAVLPYLLVANVRAANTAYRIFT 214 (336)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 35666677777777777777766651 011 1134567777777665 567889888877655544
Q ss_pred h----cCC------------------CCHHH-HHHHHHHHHHccC---HHHHHHHHHHHHHhCC-CCHHHHHHHHHHHH
Q 007401 551 S----LDK------------------KNVKA-YLRRGTAREALFC---YNEALQDFKHAMVLEP-QNKAANLAEKRLRK 602 (605)
Q Consensus 551 ~----~~p------------------~~~~~-~~~la~~~~~~g~---~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~ 602 (605)
+ .+| ..+.. +..+-..-.+.+. |..-.+.|+..++.+| ........++.++-
T Consensus 215 ~~l~~~~p~L~~q~~~~~~~~~~~~p~~PLLNFl~lLllt~q~~~~~lF~~L~~~Y~~~l~rd~~~~~~~L~~IG~~YF 293 (336)
T 3lpz_A 215 SALVEDNKGLTVQNIGSQSAELRIFPSLPLLNFISMLLLSVQKGSPDLFRQLKSKYEANLNELNGIWDTALELIAEMYF 293 (336)
T ss_dssp HHHHHHCTTSCCEESCC--CCCEECTTCHHHHHHHHHHHHHHSCCHHHHHHHHHHTHHHHHTTTTTTHHHHHHHHHHHH
T ss_pred HHHhhcCCCccccccccCCcccccCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHc
Confidence 3 222 23321 2223333445553 4555667777777777 67777777777653
No 322
>2dl1_A Spartin; SPG20, MIT, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.54 E-value=99 Score=24.91 Aligned_cols=31 Identities=29% Similarity=0.296 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q 007401 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIK 517 (605)
Q Consensus 487 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~ 517 (605)
..+..+.+.|...-..|+-++|+++|++.|.
T Consensus 20 ~~AF~~Is~AL~~DE~g~k~~Al~lYk~GI~ 50 (116)
T 2dl1_A 20 KKAFLFVNKGLNTDELGQKEEAKNYYKQGIG 50 (116)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhhcCCHHHHHHHHHHHHH
Confidence 4466677777777778888888888888775
No 323
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=23.56 E-value=2e+02 Score=23.11 Aligned_cols=14 Identities=29% Similarity=0.297 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHh
Q 007401 505 WNKAVNYYSEAIKL 518 (605)
Q Consensus 505 ~~~A~~~~~~al~~ 518 (605)
+++|+.+..+|++.
T Consensus 15 l~kAi~lv~~Ave~ 28 (117)
T 2cpt_A 15 LQKAIDLASKAAQE 28 (117)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 45677777777643
No 324
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=22.62 E-value=1.8e+02 Score=28.09 Aligned_cols=103 Identities=13% Similarity=0.054 Sum_probs=57.0
Q ss_pred HhHHHHHHhhhccCCCCCCCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Q 007401 463 YDSLQEQVNIASNLVPLPDTNGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQA 542 (605)
Q Consensus 463 ~~~~~e~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A 542 (605)
...+.+.+....+... ..-.+.+.+..+|..+++.+++.+|..+|-.. +.+++..+..+=.-++...
T Consensus 113 ~~fi~~ai~WS~~~g~-----~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~---~~~s~~~~a~~l~~w~~~~----- 179 (312)
T 2wpv_A 113 KDVITGMNNWSIKFSE-----YKFGDPYLHNTIGSKLLEGDFVYEAERYFMLG---THDSMIKYVDLLWDWLCQV----- 179 (312)
T ss_dssp HHHHHHHHHHHHHTSS-----CTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTS---CHHHHHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHhhcCC-----CCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhC---CCccHHHHHHHHHHHHHhc-----
Confidence 3445566666544421 12345788889999999999998888876411 1112333333222222220
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHH-HHHHccCHHHHHHHHHHHHH
Q 007401 543 EEDCSKTISLDKKNVKAYLRRGT-AREALFCYNEALQDFKHAMV 585 (605)
Q Consensus 543 ~~~~~~al~~~p~~~~~~~~la~-~~~~~g~~~~A~~~~~~al~ 585 (605)
-.-+|.....+..++. .|..+++.+.|...++...+
T Consensus 180 -------~~~~~~e~dlf~~RaVL~yL~l~n~~~A~~~~~~f~~ 216 (312)
T 2wpv_A 180 -------DDIEDSTVAEFFSRLVFNYLFISNISFAHESKDIFLE 216 (312)
T ss_dssp -------TCCCHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHH
T ss_pred -------CCCCcchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 0012223444445554 46788888888888776654
No 325
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=22.33 E-value=1.3e+02 Score=22.69 Aligned_cols=16 Identities=19% Similarity=0.289 Sum_probs=6.4
Q ss_pred HHccCHHHHHHHHHHH
Q 007401 568 EALFCYNEALQDFKHA 583 (605)
Q Consensus 568 ~~~g~~~~A~~~~~~a 583 (605)
-..|+|++|+.+|..+
T Consensus 27 D~~g~y~eAl~lY~~A 42 (86)
T 4a5x_A 27 DSESRYPQALVCYQEG 42 (86)
T ss_dssp HHTTCHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHH
Confidence 3334444444433333
No 326
>3mcx_A SUSD superfamily protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE GOL; 1.49A {Bacteroides thetaiotaomicron}
Probab=22.18 E-value=2e+02 Score=29.49 Aligned_cols=56 Identities=13% Similarity=0.098 Sum_probs=38.8
Q ss_pred HHHHHhHHHHHHhhhccCCCCCCCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Q 007401 459 VLDLYDSLQEQVNIASNLVPLPDTNGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKL 518 (605)
Q Consensus 459 a~~l~~~~~e~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~ 518 (605)
...+...+.+++..+.. ...........++..++.+|+..++|++|+++.+++|..
T Consensus 176 y~~I~~DL~~A~~~L~~----~~~~gr~tk~aa~allarvyL~~~~~~~A~~~a~~vi~~ 231 (477)
T 3mcx_A 176 YEQVVSDMSNALSGLRQ----ETSNGYINYWAAQALLSRVYLNMGEYQKAYDAATDVIKN 231 (477)
T ss_dssp HHHHHHHHHHHGGGSCS----SCCTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcc----cccCCcCcHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhC
Confidence 34444445555444321 222345566778888999999999999999999999864
No 327
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=22.17 E-value=3.8e+02 Score=24.33 Aligned_cols=81 Identities=16% Similarity=0.203 Sum_probs=0.0
Q ss_pred CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHH
Q 007401 483 NGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIK--LNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAY 560 (605)
Q Consensus 483 ~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 560 (605)
.+.++....|..++... +++.+.|.-+.. +.-..+..|...|..+-..|+|.+|.+.|+..++..-.-..-+
T Consensus 114 knD~RyLklWl~Ya~~~------~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~rL 187 (223)
T 4aez_C 114 KDDVRYLRIWMQYVNYI------DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKPFLRF 187 (223)
T ss_dssp TTCHHHHHHHHHHHTTC------SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBSHHHH
T ss_pred cCCHHHHHHHHHHHHcc------CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHHHH
Q ss_pred HHHHHHHHH
Q 007401 561 LRRGTAREA 569 (605)
Q Consensus 561 ~~la~~~~~ 569 (605)
...-.-+..
T Consensus 188 ~~~~~~F~~ 196 (223)
T 4aez_C 188 QQKYQQFTH 196 (223)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
No 328
>4gq4_A Menin; tumor suppressor, nucleus, transcription-transcription inhib complex; HET: 0RT EPE PE4; 1.27A {Homo sapiens} PDB: 4gq3_A* 4gpq_A* 4gq6_A*
Probab=22.16 E-value=2e+02 Score=28.93 Aligned_cols=76 Identities=11% Similarity=0.007 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHHCC--CHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc------CCC
Q 007401 489 SELLKEKGNAAFKGK--QWNKAVNYYSEAIKL-----NGTSATYYSNRAAAYLELGCFQQAEEDCSKTISL------DKK 555 (605)
Q Consensus 489 a~~~~~~g~~~~~~g--~~~~A~~~~~~al~~-----~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~------~p~ 555 (605)
.-++.++|+.....- ....+++.|+++|.. .......|..+|-.++..++|.+|++.+..+-.. ..+
T Consensus 262 PmALgnLgDLEei~pt~grp~~~~Lf~~AI~~ar~~Y~~~hvYPYtYlgG~~~R~~~~~eAl~~wa~aa~Vi~~YnY~re 341 (489)
T 4gq4_A 262 PMALGNLADLEELEPTPGRPDPLTLYHKGIASAKTYYRDEHIYPYMYLAGYHCRNRNVREALQAWADTATVIQDYNYCRE 341 (489)
T ss_dssp HHHHHHHHHHHHHSCCTTSCCHHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCCCTT
T ss_pred chhhhcccCHhhcCCCCCCCCHHHHHHHHHHHHHHhcccCcccceeecchHHHHhhhHHHHHHHhhhhhhhhhhcccccc
Confidence 445566666554332 223477888888873 3445677888899999999999999999887432 344
Q ss_pred CHHHHHHHH
Q 007401 556 NVKAYLRRG 564 (605)
Q Consensus 556 ~~~~~~~la 564 (605)
+.+.|-.+-
T Consensus 342 DeEiYke~~ 350 (489)
T 4gq4_A 342 DEEIYKEFF 350 (489)
T ss_dssp CHHHHHHHH
T ss_pred hHHHHHHHH
Confidence 555554443
No 329
>3myv_A SUSD superfamily protein; RAGB, SUSD and hypothetical proteins, structural genomics, J center for structural genomics, JCSG; HET: MSE; 1.80A {Bacteroides vulgatus}
Probab=20.84 E-value=1.8e+02 Score=29.56 Aligned_cols=29 Identities=7% Similarity=-0.261 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 007401 557 VKAYLRRGTAREALFCYNEALQDFKHAMV 585 (605)
Q Consensus 557 ~~~~~~la~~~~~~g~~~~A~~~~~~al~ 585 (605)
..++-.+|++|+..++|++|++..++++.
T Consensus 190 ~aa~allarvyL~~~~~~~A~~~a~~vi~ 218 (454)
T 3myv_A 190 YAARALLARIYLYHDDNRKAFDLADQLIK 218 (454)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHh
Confidence 44666777777777777777777777764
No 330
>3myv_A SUSD superfamily protein; RAGB, SUSD and hypothetical proteins, structural genomics, J center for structural genomics, JCSG; HET: MSE; 1.80A {Bacteroides vulgatus}
Probab=20.36 E-value=1.9e+02 Score=29.44 Aligned_cols=56 Identities=18% Similarity=0.170 Sum_probs=39.0
Q ss_pred HHHHHHhHHHHHHhhhccCCCCCCCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q 007401 458 TVLDLYDSLQEQVNIASNLVPLPDTNGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIK 517 (605)
Q Consensus 458 ~a~~l~~~~~e~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~ 517 (605)
+...+...+.+++..+.. ...........++..++.+++..++|++|+++.+++|.
T Consensus 163 vy~~I~~DL~~A~~~L~~----~~~~gr~tk~aa~allarvyL~~~~~~~A~~~a~~vi~ 218 (454)
T 3myv_A 163 AYDFIIETLEEAVTLMSE----EKNNGRMNKYAARALLARIYLYHDDNRKAFDLADQLIK 218 (454)
T ss_dssp HHHHHHHHHHHHHHHCCC----SCCTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccc----cccCCeecHHHHHHHHHHHHHhcccHHHHHHHHHHHHh
Confidence 334455555555554422 12234556677888899999999999999999999986
No 331
>3u84_A Menin; MLL, JUND, ledgf, TPR, transglutaminase-like, transcription, epigenetics, cancer; 2.50A {Homo sapiens} PDB: 3u85_A 3u86_A 3u88_A*
Probab=20.14 E-value=1.6e+02 Score=29.50 Aligned_cols=63 Identities=11% Similarity=-0.009 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHCCCH--HHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 007401 489 SELLKEKGNAAFKGKQW--NKAVNYYSEAIKL-----NGTSATYYSNRAAAYLELGCFQQAEEDCSKTIS 551 (605)
Q Consensus 489 a~~~~~~g~~~~~~g~~--~~A~~~~~~al~~-----~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 551 (605)
.-++-++|+.--..-.. ..++..|.++|.. ...+...|..+|.+|+..++|.+|+..+..+-.
T Consensus 277 PmALgnLgDLEe~~pt~gr~~~~~L~~~AI~sa~~~Y~n~HvYPYtYlgGy~yR~~~~reAl~~WA~Aa~ 346 (550)
T 3u84_A 277 PMALGNLADLEELEPTPGRPDPLTLYHKGIASAKTYYRDEHIYPYMYLAGYHCRNRNVREALQAWADTAT 346 (550)
T ss_dssp HHHHHHHHHHHHHSCCTTCCCHHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred chhhcchhhHhhcCCCCCCCCHHHHHHHHHHHHHHHhccCCccceeecchhhhhcchHHHHHHHHHHHHH
Confidence 44556666655443222 2478888888864 345567788899999999999999999887643
No 332
>2yhe_A SEC-alkyl sulfatase; hydrolase, inversion, metallo-beta-lactamase fold; 2.70A {Pseudomonas SP}
Probab=25.10 E-value=23 Score=38.60 Aligned_cols=52 Identities=15% Similarity=0.111 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Q 007401 489 SELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQ 540 (605)
Q Consensus 489 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~ 540 (605)
++.....+..++..|+|.-|.+..+.++..+|+|..+...++.+|.+++.-.
T Consensus 461 ~~~~~~~a~~~~~~g~~~wa~~l~~~~~~a~p~~~~ar~l~a~~~~~l~~~~ 512 (668)
T 2yhe_A 461 ADAVLKQMRAAIDKGDYRWAVQLGNHLVFADPANKDARALQADAMEQLGYQT 512 (668)
Confidence 4455556666666666666666666666666666666666666666665433
Done!