RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 007401
(605 letters)
>1o9p_A Malonamidase E2; malonate; 1.8A {Bradyrhizobium japonicum} SCOP:
c.117.1.1 PDB: 1o9o_A 1obl_A 1och_A 1obk_A 1obi_A
1o9q_A* 1obj_A 1o9n_A 1ock_A 1ocl_A 1ocm_A
Length = 414
Score = 194 bits (495), Expect = 4e-56
Identities = 61/157 (38%), Positives = 75/157 (47%), Gaps = 8/157 (5%)
Query: 68 AARQPLAGLKFAIKDVFDVKGYVTGFGSPDWKRDHHEAERTAVVVTLLLKNGATCIGKTV 127
A PL G+ IKD+ D T GS + A VV +L + GAT IGKT
Sbjct: 49 QASGPLRGIAVGIKDIIDTANMPTEMGSE--IYRGWQPRSDAPVVMMLKRAGATIIGKTT 106
Query: 128 LDEFAFGITGENKHYGTPVNPQMPSHIPGGSSSGSAVAVAAQLVDFALGTDTIGCVRVPA 187
FA NP H PGG+SSGSA AV A ++ ALGT T G V PA
Sbjct: 107 TTAFASRDPTATL------NPHNTGHSPGGASSGSAAAVGAGMIPLALGTQTGGSVIRPA 160
Query: 188 SFCGILGYRPSHGTVSMIGVLPNSQSLDTVGLLARNA 224
++CG +PS + +GV S +LDTVGL A
Sbjct: 161 AYCGTAAIKPSFRMLPTVGVKCYSWALDTVGLFGARA 197
Score = 30.2 bits (69), Expect = 1.9
Identities = 15/90 (16%), Positives = 30/90 (33%), Gaps = 7/90 (7%)
Query: 369 KVRNEMRAALQRLLKDDKILVIPTVSDPPLKLNTKKTYSAEFHDRTLVLSSIGSMSGCCQ 428
++ R L + + +L+ + T + + + ++ G
Sbjct: 320 RIGRRGRRELGEVFEGVDVLLTYSAPGTAPAKALASTGDPRY-------NRLWTLMGNPC 372
Query: 429 VAIPIGKYNEHPISISFITYHGGDKFLLDT 458
V +P+ K PI + I G D L T
Sbjct: 373 VNVPVLKVGGLPIGVQVIARFGNDAHALAT 402
>2dc0_A Probable amidase; structural genomics, NPPSFA, national project on
protein structural and functional analyses; 2.00A
{Thermus thermophilus}
Length = 434
Score = 178 bits (455), Expect = 3e-50
Identities = 74/170 (43%), Positives = 92/170 (54%), Gaps = 10/170 (5%)
Query: 69 ARQPLAGLKFAIKDVFDVKGYVTGFGSPDWK-RDHHEAERTAVVVTLLLKNGATCIGKTV 127
R PL GL +KD+F VKG T G+ K E A V L + GA KT
Sbjct: 61 VRGPLHGLPLTVKDLFPVKGMPTRAGT---KAPLPPLPE-EARAVRRLREAGALLFAKTN 116
Query: 128 LDEFAFGITGENKHYGTPVNPQMPSHIPGGSSSGSAVAVAAQLVDFALGTDTIGCVRVPA 187
+ E A GITGEN G N PS GGSS GSAVAVA + +LGTDT G +R+PA
Sbjct: 117 MHEIALGITGENPWTGPVRNAVDPSRQAGGSSGGSAVAVALGIGLASLGTDTGGSIRIPA 176
Query: 188 SFCGILGYRPSHGTVSMIGVLPNSQSLDTVGLLARN---ASILHRV--GH 232
F G++G++PS+G VS+ G LP S+S D G L R+ A L + G
Sbjct: 177 GFNGVVGFKPSYGRVSLEGALPLSRSTDHAGPLTRSVRDAHFLTEILAGE 226
Score = 30.6 bits (70), Expect = 1.8
Identities = 19/93 (20%), Positives = 38/93 (40%), Gaps = 4/93 (4%)
Query: 368 YKVRNEMRAALQRLLKDDKILVIPTVSDPPLKLNTKK----TYSAEFHDRTLVLSSIGSM 423
R +R L + L+ L++P P L T++ + + + L+ S+
Sbjct: 331 VAEREALRLELVKALRGVDALLLPVQPLPAPPLGTEEVELESGRKGHREAFITLTLPFSL 390
Query: 424 SGCCQVAIPIGKYNEHPISISFITYHGGDKFLL 456
G +A+P K P+ + + +G D +L
Sbjct: 391 LGVPTLALPFAKVEGMPVGLQVVGAYGEDGKVL 423
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein
interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP:
a.118.8.1 PDB: 2bug_A
Length = 166
Score = 169 bits (430), Expect = 6e-50
Identities = 45/125 (36%), Positives = 75/125 (60%)
Query: 480 PDTNGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCF 539
P +G++ +E LK + N FK K + A+ +YS+AI+LN ++A YY NR+ AYL C+
Sbjct: 4 PPADGALKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECY 63
Query: 540 QQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAANLAEKR 599
A D ++ I LDKK +K Y RR + AL + AL+D++ + ++P +K A + +
Sbjct: 64 GYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQE 123
Query: 600 LRKLI 604
K++
Sbjct: 124 CNKIV 128
>3a2q_A 6-aminohexanoate-cyclic-dimer hydrolase; alpha/beta fold, nylon
degradation; 1.80A {Arthrobacter SP} PDB: 3a2p_A
Length = 493
Score = 176 bits (449), Expect = 7e-49
Identities = 60/201 (29%), Positives = 87/201 (43%), Gaps = 18/201 (8%)
Query: 30 VLAETLRR--RRNPKLNG--RVDFGAFLERFELIPFPQPPPPAARQPLAGLKFAIKDVFD 85
+L T+ NP++N F E A P AG+ + +KD+
Sbjct: 27 LLEATIAHVQAVNPEINAVIIPLFEKARRESE----------LASGPFAGVPYLLKDLTV 76
Query: 86 V-KGYVTGFGSPDWKRDHHEAERTAVVVTLLLKNGATCIGKTVLDEFAFGITGENKHYGT 144
V +G + K + A+ A V + G +GKT E +T E + +G
Sbjct: 77 VSQGDINTSSIKGMKESGYRADHDAYFVQRMRAAGFVLLGKTNTPEMGNQVTTEPEAWGA 136
Query: 145 PVNPQMPSHIPGGSSSGSAVAVAAQLVDFALGTDTIGCVRVPASFCGILGYRPSHGTVSM 204
NP GGSS GS AVAA L A G D G VR+PAS CG++G +P+ G +S
Sbjct: 137 TRNPWNLGRSVGGSSGGSGAAVAAALSPVAHGNDAAGAVRIPASVCGVVGLKPTRGRISP 196
Query: 205 IGVLPNSQS---LDTVGLLAR 222
++ +S + GL AR
Sbjct: 197 GPLVTDSDNVAGAAHEGLFAR 217
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical
repeat, HSP70, protein binding, chaperone; 1.60A {Homo
sapiens} SCOP: a.118.8.1
Length = 118
Score = 163 bits (416), Expect = 2e-48
Identities = 40/117 (34%), Positives = 59/117 (50%)
Query: 486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEED 545
++ LKEKGN A + A+ YSEAIKL+ + YSNR+AAY + G +Q+A ED
Sbjct: 1 MEQVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYED 60
Query: 546 CSKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAANLAEKRLRK 602
KT+ L K Y R+ A E L + EA + ++ + E N + +
Sbjct: 61 GCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNMEA 117
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast
structural genomics consortiu PSI-biology, protein
structure initiative, chaperone; NMR {Homo sapiens}
Length = 133
Score = 164 bits (417), Expect = 2e-48
Identities = 42/116 (36%), Positives = 65/116 (56%)
Query: 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDC 546
D + ++K KGN F+ + +A+ +Y+EAIK N A YSNRAA Y +L FQ A +DC
Sbjct: 14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDC 73
Query: 547 SKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAANLAEKRLRK 602
+ I L+ +K Y R+ A EA+ Y +A+ ++ A+ L+ K A +R
Sbjct: 74 EECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMM 129
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for
structu genomics, MCSG, tetratricopeptide repeat domain;
1.60A {Caenorhabditis elegans}
Length = 126
Score = 162 bits (412), Expect = 7e-48
Identities = 37/116 (31%), Positives = 66/116 (56%)
Query: 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDC 546
+ ++ K KGN FK + A+ +Y+EA+K + +A YSNRAA +L FQ+A +DC
Sbjct: 11 ELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDC 70
Query: 547 SKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAANLAEKRLRK 602
I LD K +K Y+R+ A+ +++A + ++ A+ ++P N+ A + +
Sbjct: 71 DTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNCLR 126
>3a1k_A Amidase; AS family enzyme, hydrolase; 2.17A {Rhodococcus SP} PDB:
3a1i_A
Length = 521
Score = 173 bits (440), Expect = 2e-47
Identities = 61/178 (34%), Positives = 83/178 (46%), Gaps = 23/178 (12%)
Query: 68 AARQPLAGLKFAIKDVFDVKGYVT--------GFGSPDWKRDHHEAERTAVVVTLLLKNG 119
+ L G + AIKD V G GF R A VVT LL G
Sbjct: 83 TSDGVLTGRRVAIKDNVTVAGVPMMNGSRTVEGFTPS----------RDATVVTRLLAAG 132
Query: 120 ATCIGKTVLDEFAFGITGENKHYGTPVNPQMPSHIPGGSSSGSAVAVAAQLVDFALGTDT 179
AT GK V ++ F + G NP GGSS GSA VA VDFA+G D
Sbjct: 133 ATVAGKAVCEDLCFSGSSFTPASGPVRNPWDRQREAGGSSGGSAALVANGDVDFAIGGDQ 192
Query: 180 IGCVRVPASFCGILGYRPSHGTVSMIGVLPNSQSLDTVGLLARN---ASILHRV--GH 232
G +R+PA+FCG++G++P+ G V G P +++D +G + R A+++ V G
Sbjct: 193 GGSIRIPAAFCGVVGHKPTFGLVPYTGAFPIERTIDHLGPITRTVHDAALMLSVIAGR 250
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase,
ligase-chaperone complex; 1.54A {Mus musculus} PDB:
3q47_B 3q4a_B*
Length = 137
Score = 161 bits (410), Expect = 2e-47
Identities = 35/111 (31%), Positives = 61/111 (54%)
Query: 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDC 546
+++ LKE+GN F G+++ +A Y AI N A YY+NRA YL++ +QA DC
Sbjct: 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADC 66
Query: 547 SKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAANLAE 597
+ + LD ++VKA+ G + + Y+EA+ + + A L + + +
Sbjct: 67 RRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDD 117
>2dba_A Smooth muscle cell associated protein-1, isoform 2;
tetratricopeptide repeat, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 148
Score = 161 bits (410), Expect = 3e-47
Identities = 40/120 (33%), Positives = 65/120 (54%), Gaps = 3/120 (2%)
Query: 486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTS---ATYYSNRAAAYLELGCFQQA 542
+ E L+++GN FK + A+ Y++A+ L+ T A + NRAA +L+L + +A
Sbjct: 25 ASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKA 84
Query: 543 EEDCSKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAANLAEKRLRK 602
E + SK I D +VKA RR A E L ++A+ D + + LEP+NK A + +
Sbjct: 85 ETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISG 144
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and
HSP90, C-terminal PA HSP70, peptide binding protein;
1.60A {Saccharomyces cerevisiae}
Length = 126
Score = 159 bits (404), Expect = 1e-46
Identities = 38/110 (34%), Positives = 55/110 (50%)
Query: 489 SELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSK 548
+E + +G F W AV Y+E IK A YSNRAAA +L F +A DC+K
Sbjct: 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNK 63
Query: 549 TISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAANLAEK 598
I D V+AY+R+ TA+ A+ Y AL+ A + + + A +
Sbjct: 64 AIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSARE 113
Score = 29.2 bits (66), Expect = 1.9
Identities = 10/47 (21%), Positives = 14/47 (29%)
Query: 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQ 541
K A K++ A+ A + S R L QQ
Sbjct: 78 KATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQQ 124
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein,
tetratricopeptide repeat protein, HOST-virus
interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Length = 131
Score = 159 bits (404), Expect = 1e-46
Identities = 46/120 (38%), Positives = 71/120 (59%), Gaps = 4/120 (3%)
Query: 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDC 546
+E LK +GN K + + AV++Y +AI+LN +A Y+ NRAAAY +LG + A +DC
Sbjct: 10 AEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDC 69
Query: 547 SKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAA----NLAEKRLRK 602
+ I +D KAY R G A +L + EA+ +K A+ L+P N+ +AE +LR+
Sbjct: 70 ERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLRE 129
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1,
SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Length = 164
Score = 159 bits (404), Expect = 4e-46
Identities = 36/129 (27%), Positives = 65/129 (50%), Gaps = 6/129 (4%)
Query: 480 PDTNGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCF 539
P + S+ LK +GNAA K+++KA++ Y++A+ + + Y SNRAAAY G
Sbjct: 2 PRSMAPTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQH 61
Query: 540 QQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAANL---- 595
++A ED +D K KA+ R G AR + Y A + ++ + E + +
Sbjct: 62 EKAAEDAELATVVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGL 121
Query: 596 --AEKRLRK 602
++++ +
Sbjct: 122 ETTKRKIEE 130
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3
ligase, ubiquitinylation, TPR, heat-shock protein
complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Length = 281
Score = 158 bits (402), Expect = 2e-44
Identities = 36/118 (30%), Positives = 62/118 (52%)
Query: 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDC 546
+++ LKE+GN F G+++ +A Y AI N A YY+NRA YL++ +QA DC
Sbjct: 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADC 61
Query: 547 SKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAANLAEKRLRKLI 604
+ + LD ++VKA+ G + + Y+EA+ + + A L + + + I
Sbjct: 62 RRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRI 119
>3ppm_A Fatty-acid amide hydrolase 1; protein-inhibitor complex, FAAH,
oxazole, oxadiazole, endoca degradation, membrane
protein; HET: JG1 1DO; 1.78A {Rattus norvegicus} PDB:
2wj2_A* 3k7f_A* 3k83_A* 3k84_A* 3lj6_A* 3lj7_A 3oj8_A*
2wj1_A* 3pr0_A* 2wap_A* 1mt5_A* 2vya_A* 3qk5_A* 3qj8_A*
3qj9_A* 3qkv_A*
Length = 573
Score = 161 bits (410), Expect = 5e-43
Identities = 70/398 (17%), Positives = 134/398 (33%), Gaps = 47/398 (11%)
Query: 72 PLAGLKFAIKDVFDVKGYVTGFGSPDWKRDHHEAERTAVVVTLLLKNGATCIGKTVLDEF 131
L G+ ++K+ F KG+ + G + +E VVV +L GA T + +
Sbjct: 127 LLYGVPVSLKECFSYKGHDSTLGLSLNE--GMPSESDCVVVQVLKLQGAVPFVHTNVPQS 184
Query: 132 AFGITGENKHYGTPVNPQMPSHIPGGSSSGSAVAVAAQLVDFALGTDTIGCVRVPASFCG 191
F N +G +NP S PGGSS G + + LGTD G +R P++FCG
Sbjct: 185 MFSYDCSNPLFGQTMNPWKSSKSPGGSSGGEGALIGSGGSPLGLGTDIGGSIRFPSAFCG 244
Query: 192 ILGYRPSHGTVSMIGVLP----NSQSLDTVGLLARNAS---ILHRV-----------GHV 233
I G +P+ +S G+ + ++G +AR+ + +
Sbjct: 245 ICGLKPTGNRLSKSGLKGCVYGQTAVQLSLGPMARDVESLALCLKALLCEHLFTLDPTVP 304
Query: 234 LLQLNAVEPRRARRLIFA----DDIFQLSKVPKLKTIHVISKAIESLS--GYQ-----NP 282
L R +R L D+ S P ++ + + + L G+
Sbjct: 305 PLPFREEVYRSSRPLRVGYYETDNYTMPS--PAMR--RALIETKQRLEAAGHTLIPFLPN 360
Query: 283 EHMNVGQYIASNVPSLKGLRAQSTSPENGTATLKALSSVMLSLQRYEFKTIYEEWVKSAK 342
+ +++ G R+ + + +++ FK + +K
Sbjct: 361 NIPYALEVLSTGGLFSDGGRSFLQNFKGDFVDPCLGDLILILRLPSWFKRLLSLLLKPLF 420
Query: 343 PRLGYNVFERVLEAINTTQDNIKILYKVRNEMRAALQRLLKDDKILVI--PTVSDPPLKL 400
PRL + + + K L R ++ K + V+ P +
Sbjct: 421 PRLAA-FLNNMRPR--SAEKLWK-LQHEIEMYRQSVIAQWKAMNLDVLLTPMLGPALDLN 476
Query: 401 NTKKTYSAEFHDRTLVLSSIGSMSGCCQVAIPIGKYNE 438
+ A + + + + +P+
Sbjct: 477 TPGRATGAVSY------TMLYNCLDFPAGVVPVTTVTA 508
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical
repeat, protein binding, chaperone; 1.90A {Homo sapiens}
SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Length = 131
Score = 145 bits (367), Expect = 2e-41
Identities = 36/123 (29%), Positives = 60/123 (48%), Gaps = 10/123 (8%)
Query: 490 ELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKT 549
KE GN A+K K ++ A+ +Y +A +L+ T+ TY +N+AA Y E G + + E C K
Sbjct: 5 LKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKA 64
Query: 550 ISLDKKN-------VKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAAN---LAEKR 599
I + ++N KAY R G + Y +A+ + ++ AEK
Sbjct: 65 IEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVLKKCQQAEKI 124
Query: 600 LRK 602
L++
Sbjct: 125 LKE 127
>1m22_A Peptide amidase, PAM; eleven-stranded beta sheet, covered double
layers of alpha helices on TOP and bottom, hydrolase;
HET: EPE; 1.40A {Stenotrophomonas maltophilia} SCOP:
c.117.1.1 PDB: 1m21_A*
Length = 503
Score = 155 bits (394), Expect = 4e-41
Identities = 64/182 (35%), Positives = 86/182 (47%), Gaps = 29/182 (15%)
Query: 69 ARQPLAGLKFAIKDVFDVKGYVT--------GFGSPDWKRDHHEAERTAVVVTLLLKNGA 120
R PL G+ +KD + T GF D A +V L GA
Sbjct: 74 LRGPLHGIPLLLKDNINAAPMATSAGSLALQGFRPDD-----------AYLVRRLRDAGA 122
Query: 121 TCIGKTVLDEFAFGITGENK-----HYGTPVNPQMPSHIPGGSSSGSAVAVAAQLVDFAL 175
+GKT L E+A ++ G NP SH P GSSSGSAVAVAA L A+
Sbjct: 123 VVLGKTNLSEWANFRGNDSISGWSARGGQTRNPYRISHSPCGSSSGSAVAVAANLASVAI 182
Query: 176 GTDTIGCVRVPASFCGILGYRPSHGTVSMIGVLPNSQSLDTVGLLARN---ASILHRV-- 230
GT+T G + PA+ G++G +P+ G VS G++P S S DT G +AR+ A+ +
Sbjct: 183 GTETDGSIVCPAAINGVVGLKPTVGLVSRDGIIPISFSQDTAGPMARSVADAAAVLTAIA 242
Query: 231 GH 232
G
Sbjct: 243 GR 244
>3kfu_E Glutamyl-tRNA(Gln) amidotransferase subunit A; ASPRS, gatcab,
ATP-binding, aminoacyl-tRNA synthetase, ligas
nucleotide-binding, protein biosynthesis, ligase-RNA
comple; HET: H2U 5MU PSU; 3.00A {Thermus thermophilus}
Length = 471
Score = 152 bits (387), Expect = 2e-40
Identities = 68/177 (38%), Positives = 90/177 (50%), Gaps = 23/177 (12%)
Query: 69 ARQPLAGLKFAIKDVFDVKGYVT--------GFGSPDWKRDHHEAERTAVVVTLLLKNGA 120
PLAGL A+KD +G T F P A V L GA
Sbjct: 54 PGLPLAGLVVAVKDNIATRGLRTTAGSRLLENFVPP----------YEATAVARLKALGA 103
Query: 121 TCIGKTVLDEFAFGITGENKHYGTPVNPQMPSHIPGGSSSGSAVAVAAQLVDFALGTDTI 180
+GKT LDEF G + E+ + NP P +PGGSS GSA A+AA L ALG+DT
Sbjct: 104 LVLGKTNLDEFGMGSSTEHSAFFPTKNPFDPDRVPGGSSGGSAAALAADLAPLALGSDTG 163
Query: 181 GCVRVPASFCGILGYRPSHGTVSMIGVLPNSQSLDTVGLLARN---ASILHRV--GH 232
G VR PA+FCG+ G +P++G VS G++ + SLD +G +AR+ ++L G
Sbjct: 164 GSVRQPAAFCGVYGLKPTYGRVSRFGLIAYASSLDQIGPMARSVRDLALLMDAAAGP 220
>3h0l_A Glutamyl-tRNA(Gln) amidotransferase subunit A; multi protein
complex, ligase, protein biosynthesis; HET: ADP; 2.30A
{Aquifex aeolicus} PDB: 3h0m_A 3h0r_A*
Length = 478
Score = 152 bits (386), Expect = 3e-40
Identities = 64/178 (35%), Positives = 90/178 (50%), Gaps = 23/178 (12%)
Query: 68 AARQPLAGLKFAIKDVFDVKGYVT--------GFGSPDWKRDHHEAERTAVVVTLLLKNG 119
PL G+ A+KD V+G T F +P A V+ L K G
Sbjct: 59 ERELPLFGIPIAVKDNILVEGEKTTCASKILENFVAP----------YDATVIERLKKAG 108
Query: 120 ATCIGKTVLDEFAFGITGENKHYGTPVNPQMPSHIPGGSSSGSAVAVAAQLVDFALGTDT 179
A +GKT LDEFA G + E + NP +PGGSS GSA +VA +LG+DT
Sbjct: 109 ALIVGKTNLDEFAMGSSTEYSAFFPTKNPWDLERVPGGSSGGSAASVAVLSAPVSLGSDT 168
Query: 180 IGCVRVPASFCGILGYRPSHGTVSMIGVLPNSQSLDTVGLLARN---ASILHRV--GH 232
G +R PASFCG++G +P++G VS G++ + SLD +G+ R +++ V G
Sbjct: 169 GGSIRQPASFCGVIGIKPTYGRVSRYGLVAFASSLDQIGVFGRRTEDVALVLEVISGW 226
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for
structu genomics, MCSG, tetratricopeptide repeat domain;
HET: PGE; 1.85A {Caenorhabditis elegans}
Length = 127
Score = 141 bits (358), Expect = 3e-40
Identities = 36/127 (28%), Positives = 62/127 (48%), Gaps = 10/127 (7%)
Query: 482 TNGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQ 541
+N DA+ K+ GNAA+K K + KA +Y +AI+L+ ++ T+Y+N+AA Y E F +
Sbjct: 1 SNAMTDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAE 60
Query: 542 AEEDCSKTISLDKKN-------VKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAAN 594
+ C K + + ++ KA R G A + + A+Q F ++ +
Sbjct: 61 CVQFCEKAVEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRDPELVK 120
Query: 595 L---AEK 598
EK
Sbjct: 121 KVKELEK 127
>2gi3_A Glutamyl-tRNA(Gln) amidotransferase subunit A; TM1272, structural
genomics, joint center for structura genomics, JCSG;
HET: MSE MPD; 1.80A {Thermotoga maritima} SCOP:
c.117.1.1 PDB: 3al0_A*
Length = 476
Score = 151 bits (383), Expect = 7e-40
Identities = 63/178 (35%), Positives = 88/178 (49%), Gaps = 23/178 (12%)
Query: 68 AARQPLAGLKFAIKDVFDVKGYVT--------GFGSPDWKRDHHEAERTAVVVTLLLKNG 119
+ G+ AIKD G T + S A VV + + G
Sbjct: 54 EKKGKFWGIPVAIKDNILTLGMRTTCASRILENYESV----------FDATVVKKMKEAG 103
Query: 120 ATCIGKTVLDEFAFGITGENKHYGTPVNPQMPSHIPGGSSSGSAVAVAAQLVDFALGTDT 179
+GK LDEFA G + E + NP +PGGSS GSA AV+A +V ALG+DT
Sbjct: 104 FVVVGKANLDEFAMGSSTERSAFFPTRNPWDLERVPGGSSGGSAAAVSAGMVVAALGSDT 163
Query: 180 IGCVRVPASFCGILGYRPSHGTVSMIGVLPNSQSLDTVGLLARN---ASILHRV--GH 232
G VR PAS CG++GY+P++G VS G++ + SLD +G + + A+IL + G
Sbjct: 164 GGSVRQPASLCGVVGYKPTYGLVSRYGLVAFASSLDQIGPITKTVRDAAILMEIISGR 221
>3ip4_A Glutamyl-tRNA(Gln) amidotransferase subunit A; multi protein
complex, ligase, ATP-binding, nucleotide-bindi protein
biosynthesis; 1.90A {Staphylococcus aureus subsp} PDB:
2df4_A 2dqn_A* 2g5h_A 2g5i_A* 2f2a_A
Length = 485
Score = 151 bits (383), Expect = 7e-40
Identities = 64/177 (36%), Positives = 88/177 (49%), Gaps = 23/177 (12%)
Query: 69 ARQPLAGLKFAIKDVFDVKGYVT--------GFGSPDWKRDHHEAERTAVVVTLLLKNGA 120
L G+ IKD G T GF + V+ L K A
Sbjct: 67 MDGKLFGIPMGIKDNIITNGLETTCASKMLEGFVPI----------YESTVMEKLHKENA 116
Query: 121 TCIGKTVLDEFAFGITGENKHYGTPVNPQMPSHIPGGSSSGSAVAVAAQLVDFALGTDTI 180
IGK +DEFA G + E ++ VNP +PGGSS GSA AVAA LV +LG+DT
Sbjct: 117 VLIGKLNMDEFAMGGSTETSYFKKTVNPFDHKAVPGGSSGGSAAAVAAGLVPLSLGSDTG 176
Query: 181 GCVRVPASFCGILGYRPSHGTVSMIGVLPNSQSLDTVGLLARN---ASILHRV--GH 232
G +R PA++CG++G +P++G VS G++ + SLD +G L RN +I+ G
Sbjct: 177 GSIRQPAAYCGVVGMKPTYGRVSRFGLVAFASSLDQIGPLTRNVKDNAIVLEAISGA 233
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156,
PSI-biology, midwest center structural genomics, MCSG;
2.41A {Caenorhabditis elegans}
Length = 162
Score = 138 bits (349), Expect = 2e-38
Identities = 34/135 (25%), Positives = 62/135 (45%), Gaps = 18/135 (13%)
Query: 486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAI------------------KLNGTSATYYS 527
+ + E L++KGN F K + +A++ Y +A+ +L+ + Y+
Sbjct: 8 LKSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYA 67
Query: 528 NRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLE 587
N + YL +G +AEE S+ + ++ N KA RR AR A + +EA +D K +
Sbjct: 68 NMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNH 127
Query: 588 PQNKAANLAEKRLRK 602
P + E ++
Sbjct: 128 PAAASVVAREMKIVT 142
>2l6j_A TPR repeat-containing protein associated with HSP;
tetratricopeptide repeat (TPR), HSP90 CO-factor, protein
BIN; NMR {Saccharomyces cerevisiae}
Length = 111
Score = 135 bits (341), Expect = 6e-38
Identities = 24/101 (23%), Positives = 43/101 (42%), Gaps = 6/101 (5%)
Query: 489 SELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSK 548
E KE+GN+ FK + +AV+ Y + I + YSN+A A ++LG + QA + C +
Sbjct: 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQ 63
Query: 549 TISLDKKNVKAYLRR------GTAREALFCYNEALQDFKHA 583
+ +R A+ A+ + +
Sbjct: 64 GLRYTSTAEHVAIRSKLQYRLELAQGAVGSVQIPVVEVDEL 104
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C,
TPR-containing domain, structural genomics; 1.63A
{Plasmodium falciparum} SCOP: a.118.8.1
Length = 198
Score = 131 bits (331), Expect = 1e-35
Identities = 32/135 (23%), Positives = 54/135 (40%), Gaps = 16/135 (11%)
Query: 486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAI----------------KLNGTSATYYSNR 529
+ ++ +KE+GN FK + N+A+ Y EA+ K + N
Sbjct: 35 VQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNL 94
Query: 530 AAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQ 589
A Y + + +A + SK + +DK NVKA + G A EA ++ A L P
Sbjct: 95 ATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPN 154
Query: 590 NKAANLAEKRLRKLI 604
N + + +
Sbjct: 155 NLDIRNSYELCVNKL 169
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein
interactions, TPR, super-helix,; 2.9A {Homo sapiens}
SCOP: a.118.8.1 d.159.1.3
Length = 477
Score = 136 bits (344), Expect = 9e-35
Identities = 44/121 (36%), Positives = 73/121 (60%)
Query: 484 GSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAE 543
G++ +E LK + N FK K + A+ +YS+AI+LN ++A YY NR+ AYL C+ A
Sbjct: 1 GALKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYAL 60
Query: 544 EDCSKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAANLAEKRLRKL 603
D ++ I LDKK +K Y RR + AL + AL+D++ + ++P +K A + + K+
Sbjct: 61 GDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKI 120
Query: 604 I 604
+
Sbjct: 121 V 121
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens}
SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Length = 336
Score = 127 bits (321), Expect = 9e-33
Identities = 37/134 (27%), Positives = 59/134 (44%), Gaps = 15/134 (11%)
Query: 486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAI---------------KLNGTSATYYSNRA 530
++ S ++KE+G FK ++ +A+ Y + + K + N A
Sbjct: 144 LEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLA 203
Query: 531 AAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQN 590
+L+L F A E C+K + LD N K RRG A A+ + A DF+ + L P N
Sbjct: 204 MCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNN 263
Query: 591 KAANLAEKRLRKLI 604
KAA ++ I
Sbjct: 264 KAAKTQLAVCQQRI 277
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic
reticulum, protein folding, tetratricopeptiderepeat, J
domain, unfolded protein respons; 3.00A {Homo sapiens}
PDB: 2y4u_A
Length = 450
Score = 123 bits (310), Expect = 2e-30
Identities = 31/133 (23%), Positives = 49/133 (36%)
Query: 471 NIASNLVPLPDTNGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRA 530
+ +L S+ E E G Q A++ + A+ + + Y RA
Sbjct: 8 SSGVDLGTENLYFQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRA 67
Query: 531 AAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQN 590
+L +G + A D +K I L A L+RG +EA DFK + P
Sbjct: 68 TVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSE 127
Query: 591 KAANLAEKRLRKL 603
A+ +L K
Sbjct: 128 NEEKEAQSQLIKS 140
Score = 103 bits (258), Expect = 1e-23
Identities = 23/127 (18%), Positives = 47/127 (37%), Gaps = 8/127 (6%)
Query: 484 GSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATY----YSNRAAAYLELGCF 539
+ L E + ++ A + Y +K + A Y + +
Sbjct: 252 KQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKP 311
Query: 540 QQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAAN----L 595
+A CS+ + ++ NV A R A Y+EA+QD++ A ++
Sbjct: 312 VEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEK 371
Query: 596 AEKRLRK 602
A++ L++
Sbjct: 372 AQRLLKQ 378
Score = 100 bits (251), Expect = 1e-22
Identities = 22/119 (18%), Positives = 50/119 (42%)
Query: 485 SIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEE 544
D + L+ + AF + A+ + + +++ A RA +++ G ++A
Sbjct: 139 KSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAIS 198
Query: 545 DCSKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAANLAEKRLRKL 603
D L N +A+ + T L + +L + + + L+ +K K+++KL
Sbjct: 199 DLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKL 257
Score = 80.9 bits (200), Expect = 2e-16
Identities = 20/120 (16%), Positives = 43/120 (35%), Gaps = 12/120 (10%)
Query: 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDC 546
+EL + + K + KA++ A KL + + + Y +LG + + +
Sbjct: 175 WDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEV 234
Query: 547 SKTISLDKKNVKAYLRRGTAR---------EALF---CYNEALQDFKHAMVLEPQNKAAN 594
+ + LD+ + + + + E L Y +A ++ M EP
Sbjct: 235 RECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYT 294
Score = 76.6 bits (189), Expect = 5e-15
Identities = 14/116 (12%), Positives = 40/116 (34%)
Query: 481 DTNGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQ 540
+ + + + + K ++ +A+ SE +++ + +RA AYL +
Sbjct: 287 EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYD 346
Query: 541 QAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAANLA 596
+A +D ++ + + A+ L + + + + A
Sbjct: 347 EAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKA 402
Score = 70.1 bits (172), Expect = 7e-13
Identities = 17/114 (14%), Positives = 37/114 (32%), Gaps = 15/114 (13%)
Query: 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYS---------------NRAAAYLELGCF 539
+G+ K + ++A + + + +K N + ++A G +
Sbjct: 100 RGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDY 159
Query: 540 QQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAA 593
A K + + + + R +A+ D K A L+ N A
Sbjct: 160 TAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEA 213
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A
{Saccharomyces cerevisiae}
Length = 258
Score = 118 bits (298), Expect = 3e-30
Identities = 37/107 (34%), Positives = 53/107 (49%)
Query: 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDC 546
+ +E + +G F W AV Y+E IK A YSNRAAA +L F +A DC
Sbjct: 137 EKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADC 196
Query: 547 SKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAA 593
+K I D V+AY+R+ TA+ A+ Y AL+ A + +
Sbjct: 197 NKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNG 243
Score = 99.2 bits (248), Expect = 2e-23
Identities = 23/106 (21%), Positives = 50/106 (47%), Gaps = 1/106 (0%)
Query: 489 SELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSK 548
++ K +GN +K +Q+++A+ +Y++A +L+ TY +NRAAA E G ++ A +
Sbjct: 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLND 63
Query: 549 TISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAAN 594
+ ++ Y + + L D K + ++ +
Sbjct: 64 AVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEH 109
Score = 82.6 bits (205), Expect = 8e-18
Identities = 17/99 (17%), Positives = 32/99 (32%)
Query: 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDK 554
+ K + K + +N A Y + A + ++ I
Sbjct: 111 TADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAP 170
Query: 555 KNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAA 593
++ + Y R A L + EA+ D A+ +P A
Sbjct: 171 EDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRA 209
Score = 76.8 bits (190), Expect = 7e-16
Identities = 14/99 (14%), Positives = 38/99 (38%), Gaps = 1/99 (1%)
Query: 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDK 554
+ A ++ ++ A++ ++A++ Y + ++ +G D KTI +
Sbjct: 44 RAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQ 103
Query: 555 KNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAA 593
K++ + R L + L+ + + P+
Sbjct: 104 KSLTEH-RTADILTKLRNAEKELKKAEAEAYVNPEKAEE 141
Score = 74.5 bits (184), Expect = 4e-15
Identities = 10/104 (9%), Positives = 31/104 (29%), Gaps = 3/104 (2%)
Query: 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDK 554
+ + + + I+ S T + A +L ++ + ++
Sbjct: 78 ISKSFARIGNAYHKLGDLKKTIEYYQKSLTEH-RTADILTKLRNAEKELKKAEAEAYVNP 136
Query: 555 KNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAA--NLA 596
+ + G + A++ + + P++ N A
Sbjct: 137 EKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRA 180
Score = 68.7 bits (169), Expect = 4e-13
Identities = 15/84 (17%), Positives = 31/84 (36%), Gaps = 4/84 (4%)
Query: 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDK 554
+ A K + +A+ ++AI+ + Y +A A + + + A E + D
Sbjct: 179 RAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDA 238
Query: 555 KNVKAYLRRGTAREALFCYNEALQ 578
+ R + Y +A Q
Sbjct: 239 EVNNGSSAREIDQL----YYKASQ 258
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone,
endoplasmic reticulum, TPR repeat, UNF protein response;
2.51A {Mus musculus}
Length = 359
Score = 117 bits (295), Expect = 7e-29
Identities = 30/114 (26%), Positives = 46/114 (40%)
Query: 490 ELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKT 549
E E G Q A++ + A+ + + Y RA +L +G + A D +K
Sbjct: 4 EKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKV 63
Query: 550 ISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAANLAEKRLRKL 603
I+L A L+RG +EA DFK + P + AE +L K
Sbjct: 64 IALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKA 117
Score = 107 bits (269), Expect = 2e-25
Identities = 24/127 (18%), Positives = 48/127 (37%), Gaps = 8/127 (6%)
Query: 484 GSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATY----YSNRAAAYLELGCF 539
+ L E + ++ A + Y +K + A Y + +
Sbjct: 229 KQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKP 288
Query: 540 QQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAA--NL-- 595
+A CS+ + ++ NV A R A Y+EA+QD++ A ++ L
Sbjct: 289 VEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEK 348
Query: 596 AEKRLRK 602
A++ L++
Sbjct: 349 AQRLLKQ 355
Score = 99.3 bits (248), Expect = 1e-22
Identities = 23/118 (19%), Positives = 51/118 (43%)
Query: 486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEED 545
D + L+ + AF G + A+ + + +++ A RA +++ G ++A D
Sbjct: 117 ADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISD 176
Query: 546 CSKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAANLAEKRLRKL 603
L N +A+ + T L + +L + + + L+ +K K+++KL
Sbjct: 177 LKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKL 234
Score = 81.5 bits (202), Expect = 7e-17
Identities = 20/120 (16%), Positives = 43/120 (35%), Gaps = 12/120 (10%)
Query: 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDC 546
+EL + + K + KA++ A KL + + + Y +LG + + +
Sbjct: 152 WDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEV 211
Query: 547 SKTISLDKKNVKAYLRRGTAR---------EALFC---YNEALQDFKHAMVLEPQNKAAN 594
+ + LD+ + + + + E L Y +A ++ M EP
Sbjct: 212 RECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYT 271
Score = 71.5 bits (176), Expect = 1e-13
Identities = 13/90 (14%), Positives = 35/90 (38%)
Query: 481 DTNGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQ 540
+ + + + + K ++ +A+ SE +++ + +RA AYL +
Sbjct: 264 EPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYD 323
Query: 541 QAEEDCSKTISLDKKNVKAYLRRGTAREAL 570
+A +D ++ + + A+ L
Sbjct: 324 EAIQDYEAAQEHNENDQQIREGLEKAQRLL 353
Score = 68.8 bits (169), Expect = 1e-12
Identities = 16/114 (14%), Positives = 35/114 (30%), Gaps = 15/114 (13%)
Query: 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNR---------------AAAYLELGCF 539
+G+ K + ++A + + + +K N + A + +
Sbjct: 77 RGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADY 136
Query: 540 QQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAA 593
A K + + + + R +A+ D K A L+ N A
Sbjct: 137 TAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEA 190
Score = 33.8 bits (78), Expect = 0.14
Identities = 12/43 (27%), Positives = 18/43 (41%), Gaps = 2/43 (4%)
Query: 556 NVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAA--NLA 596
+V+ +L G A +AL F A+ +P N A A
Sbjct: 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRA 44
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein
transport; 3.00A {Saccharomyces cerevisiae}
Length = 514
Score = 115 bits (289), Expect = 2e-27
Identities = 31/120 (25%), Positives = 59/120 (49%), Gaps = 2/120 (1%)
Query: 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDC 546
+ LK+KGN F+ K+++ A+ YY+ A++L +YSN +A Y+ +G ++ E
Sbjct: 4 KYALALKDKGNQFFRNKKYDDAIKYYNWALELKED-PVFYSNLSACYVSVGDLKKVVEMS 62
Query: 547 SKTISLDKKNVKAYLRRGTAREALFCYNEALQDF-KHAMVLEPQNKAANLAEKRLRKLIG 605
+K + L K LRR +A E L + +A+ D ++ + + + +R
Sbjct: 63 TKALELKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQA 122
Score = 94.8 bits (236), Expect = 9e-21
Identities = 27/112 (24%), Positives = 39/112 (34%), Gaps = 3/112 (2%)
Query: 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDC 546
+ L+ G F A +AI+L Y A + +
Sbjct: 235 KLAISLEHTGIFKFLKNDPLGAHEDIKKAIELF-PRVNSYIYMALIMADRNDSTEYYNYF 293
Query: 547 SKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAA--NLA 596
K + LD N Y RG L Y++A +DF A L+P+N LA
Sbjct: 294 DKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLA 345
Score = 91.0 bits (226), Expect = 2e-19
Identities = 21/119 (17%), Positives = 40/119 (33%), Gaps = 9/119 (7%)
Query: 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLE---------LG 537
+A E+ ++KA+ Y AI+L Y A + +
Sbjct: 370 EAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVE 429
Query: 538 CFQQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAANLA 596
F +A K LD ++ +A + + +EA+ F+ + L + A
Sbjct: 430 NFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQA 488
Score = 86.3 bits (214), Expect = 5e-18
Identities = 16/104 (15%), Positives = 37/104 (35%), Gaps = 2/104 (1%)
Query: 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDK 554
+G F + +++A + +A +L+ + Y A F E S+
Sbjct: 310 RGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFP 369
Query: 555 KNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAA--NLA 596
+ + +++AL+ + A+ LE + +A
Sbjct: 370 EAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIA 413
Score = 85.6 bits (212), Expect = 1e-17
Identities = 19/113 (16%), Positives = 40/113 (35%), Gaps = 11/113 (9%)
Query: 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDK 554
A++ +++ +SEA + + + A + F +A + I L+
Sbjct: 344 LACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELEN 403
Query: 555 KNVKAYLRRGTA---------REALFCYNEALQDFKHAMVLEPQNKAA--NLA 596
K Y+ + + EA + A L+P+++ A LA
Sbjct: 404 KLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLA 456
Score = 83.3 bits (206), Expect = 5e-17
Identities = 21/105 (20%), Positives = 40/105 (38%), Gaps = 2/105 (1%)
Query: 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDK 554
+ NY+ +A+KL+ +++ Y +R L + QA +D K LD
Sbjct: 276 MALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDP 335
Query: 555 KNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAA--NLAE 597
+N+ Y++ +++ F A P+ AE
Sbjct: 336 ENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAE 380
Score = 58.2 bits (141), Expect = 4e-09
Identities = 19/143 (13%), Positives = 39/143 (27%), Gaps = 13/143 (9%)
Query: 463 YDSLQEQVNIASNLVPLPDTNGSIDASELL-KEKGNAAFKGKQWNKAVNYYSEAIKLNGT 521
+ + + L P L + F + Y E+ + +
Sbjct: 130 FGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKE 189
Query: 522 SATYYSNRAAAYLE------------LGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREA 569
SN E F++ + ++ L +K + G +
Sbjct: 190 LMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFL 249
Query: 570 LFCYNEALQDFKHAMVLEPQNKA 592
A +D K A+ L P+ +
Sbjct: 250 KNDPLGAHEDIKKAIELFPRVNS 272
Score = 57.8 bits (140), Expect = 5e-09
Identities = 12/77 (15%), Positives = 26/77 (33%), Gaps = 2/77 (2%)
Query: 503 KQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLR 562
+ + +A N +A KL+ S A L+ +A ++ L + +
Sbjct: 429 ENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQA 488
Query: 563 RGTAREALFCYNEALQD 579
A A + ++
Sbjct: 489 ITFAEAAK--VQQRIRS 503
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling
protein; 2.85A {Arabidopsis thaliana}
Length = 338
Score = 110 bits (275), Expect = 1e-26
Identities = 32/132 (24%), Positives = 54/132 (40%), Gaps = 17/132 (12%)
Query: 490 ELLKEKGNAAFKGKQWNKAVNYYSEAI-----------------KLNGTSATYYSNRAAA 532
+ K GN+ FK ++ +A+ Y AI + N AA
Sbjct: 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAAC 239
Query: 533 YLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKA 592
++L + +A C+ ++ ++KN KA RRG A+ L + A DF+ A P +KA
Sbjct: 240 LIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKA 299
Query: 593 ANLAEKRLRKLI 604
+ L +
Sbjct: 300 IRRELRALAEQE 311
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria
translocation, allosteric REG phosphoprotein, TPR
repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae}
PDB: 3fp3_A 3fp4_A 3lca_A
Length = 537
Score = 109 bits (274), Expect = 2e-25
Identities = 35/115 (30%), Positives = 59/115 (51%), Gaps = 1/115 (0%)
Query: 489 SELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSK 548
+ LK +GN F K +N+A+ YY AI+L+ +YSN +A Y+ G ++ E +K
Sbjct: 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTK 84
Query: 549 TISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAANLAEKRLRKL 603
+ + + KA LRR +A E+L + +A+ D + L A++ R L
Sbjct: 85 ALEIKPDHSKALLRRASANESLGNFTDAMFDLS-VLSLNGDFDGASIEPMLERNL 138
Score = 89.4 bits (222), Expect = 6e-19
Identities = 33/139 (23%), Positives = 49/139 (35%), Gaps = 11/139 (7%)
Query: 460 LDLYDSLQEQVNIASNLVPLPDTNGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLN 519
D+Y SL + L +A+ L G F A E+I L+
Sbjct: 222 TDMYHSLLSANTVDDPLRE--------NAALALCYTGIFHFLKNNLLDAQVLLQESINLH 273
Query: 520 GTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEALQD 579
T +Y A + Q+ + K + L+ + Y RG L Y A +D
Sbjct: 274 PTPNSYI-FLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKED 332
Query: 580 FKHAMVLEPQNKAA--NLA 596
F+ A L P+N LA
Sbjct: 333 FQKAQSLNPENVYPYIQLA 351
Score = 89.0 bits (221), Expect = 7e-19
Identities = 21/105 (20%), Positives = 38/105 (36%), Gaps = 2/105 (1%)
Query: 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDK 554
+ + ++ +A+ LN Y +R Y L ++ A+ED K SL+
Sbjct: 282 LALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNP 341
Query: 555 KNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAA--NLAE 597
+NV Y++ + E+ F + P AE
Sbjct: 342 ENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAE 386
Score = 82.8 bits (205), Expect = 6e-17
Identities = 16/99 (16%), Positives = 34/99 (34%)
Query: 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDK 554
+G F + + A + +A LN + Y A + G F ++E ++T
Sbjct: 316 RGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFP 375
Query: 555 KNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAA 593
+ ++ A++ + A LE +
Sbjct: 376 TLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKI 414
Score = 81.7 bits (202), Expect = 2e-16
Identities = 18/120 (15%), Positives = 40/120 (33%), Gaps = 18/120 (15%)
Query: 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDK 554
+K ++ ++ +++E T + A + G F A + L++
Sbjct: 350 LACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEE 409
Query: 555 KNVKAYLRRGTAREALFC----------------YNEALQDFKHAMVLEPQNKAA--NLA 596
K ++ G +N A++ A L+P+++ A LA
Sbjct: 410 VQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLA 469
Score = 81.7 bits (202), Expect = 2e-16
Identities = 16/123 (13%), Positives = 37/123 (30%), Gaps = 16/123 (13%)
Query: 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAA-------------- 532
E+ ++ A+ Y A +L +
Sbjct: 376 TLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQD 435
Query: 533 --YLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQN 590
L+ F A + +K LD ++ +A + + + +EA++ F+ + +L
Sbjct: 436 PTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTM 495
Query: 591 KAA 593
Sbjct: 496 DEK 498
Score = 70.9 bits (174), Expect = 5e-13
Identities = 12/110 (10%), Positives = 30/110 (27%), Gaps = 3/110 (2%)
Query: 489 SELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSK 548
L ++ ++ + L +A + A+ +
Sbjct: 209 EGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQE 268
Query: 549 TISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAA--NLA 596
+I+L +Y+ E + F+ A+ L P+ +
Sbjct: 269 SINLH-PTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRG 317
Score = 66.7 bits (163), Expect = 9e-12
Identities = 14/96 (14%), Positives = 28/96 (29%), Gaps = 6/96 (6%)
Query: 507 KAVNYYSEAIKLN----GTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLR 562
++ L+ A NR + F +A + I LD Y
Sbjct: 5 NGEPDIAQLKGLSPSQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSN 64
Query: 563 RGTAREALFCYNEALQDFKHAMVLEPQNKAA--NLA 596
+ + ++ A+ ++P + A A
Sbjct: 65 ISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRA 100
Score = 64.7 bits (158), Expect = 4e-11
Identities = 11/100 (11%), Positives = 29/100 (29%), Gaps = 2/100 (2%)
Query: 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLE--LGCFQQAEEDCSKTISL 552
+ ++ ++ A S+A++ ++ A L + + L
Sbjct: 179 EVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPL 238
Query: 553 DKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKA 592
+ A G +A + ++ L P +
Sbjct: 239 RENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPTPNS 278
Score = 60.1 bits (146), Expect = 1e-09
Identities = 13/107 (12%), Positives = 31/107 (28%), Gaps = 2/107 (1%)
Query: 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDC 546
+ +++N A+ ++A +L+ S A L++ +A E
Sbjct: 426 TILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELF 485
Query: 547 SKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAA 593
+ L + + + T + L+ A
Sbjct: 486 EDSAILARTMDEKL--QATTFAEAAKIQKRLRADPIISAKMELTLAR 530
Score = 42.0 bits (99), Expect = 4e-04
Identities = 7/70 (10%), Positives = 22/70 (31%), Gaps = 2/70 (2%)
Query: 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDK 554
+ ++ ++A+ + ++ L T + E Q+ + +
Sbjct: 468 LAQLKLQMEKIDEAIELFEDSAILARTMDEKLQATT--FAEAAKIQKRLRADPIISAKME 525
Query: 555 KNVKAYLRRG 564
+ Y +G
Sbjct: 526 LTLARYRAKG 535
Score = 40.5 bits (95), Expect = 0.001
Identities = 13/66 (19%), Positives = 26/66 (39%), Gaps = 6/66 (9%)
Query: 537 GCFQQAEEDCSKTISLDKKNVK----AYLRRGTAREALFCYNEALQDFKHAMVLEPQNKA 592
G E D ++ L + RG +NEA++ +++A+ L+P
Sbjct: 1 GSHMNGEPDIAQLKGLSPSQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPV 60
Query: 593 A--NLA 596
N++
Sbjct: 61 FYSNIS 66
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase;
1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Length = 370
Score = 99.0 bits (247), Expect = 1e-22
Identities = 39/144 (27%), Positives = 65/144 (45%), Gaps = 16/144 (11%)
Query: 477 VPLPDTNGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAI----------------KLNG 520
V L D + + SE LK GN FK + W A+ Y++ + KL
Sbjct: 211 VDLKDVDKILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQP 270
Query: 521 TSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEALQDF 580
+ + N A L++ +Q A + C + + +D N KA RR + L Y++AL D
Sbjct: 271 VALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADL 330
Query: 581 KHAMVLEPQNKAANLAEKRLRKLI 604
K A + P++KA ++++ I
Sbjct: 331 KKAQEIAPEDKAIQAELLKVKQKI 354
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR
repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1
d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Length = 457
Score = 99.0 bits (246), Expect = 3e-22
Identities = 38/128 (29%), Positives = 56/128 (43%), Gaps = 15/128 (11%)
Query: 492 LKEKGNAAFKGKQWNKAVNYYSEAI---------------KLNGTSATYYSNRAAAYLEL 536
+KEKG FKG ++ +AV Y + + + N A YL+L
Sbjct: 271 VKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKL 330
Query: 537 GCFQQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAANLA 596
+ +A E C K + LD N K RRG A+ + + A DF+ + + PQNKAA L
Sbjct: 331 REYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQ 390
Query: 597 EKRLRKLI 604
+K
Sbjct: 391 ISMCQKKA 398
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin,
type III secretion, protein binding; 1.85A {Pseudomonas
aeruginosa} PDB: 2xcc_A
Length = 142
Score = 84.4 bits (209), Expect = 1e-19
Identities = 23/118 (19%), Positives = 38/118 (32%)
Query: 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDC 546
D E L G ++ +W+ A + L+ A Y+ A LG ++QA +
Sbjct: 16 DTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSY 75
Query: 547 SKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAANLAEKRLRKLI 604
S +D + L + A F A L A R ++
Sbjct: 76 SYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAARAGAML 133
Score = 59.8 bits (145), Expect = 5e-11
Identities = 15/88 (17%), Positives = 34/88 (38%), Gaps = 2/88 (2%)
Query: 512 YSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREALF 571
+ L+ + + G + A++ LD + + +L G R++L
Sbjct: 7 LAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLG 66
Query: 572 CYNEALQDFKHAMVLEPQNKAA--NLAE 597
Y +ALQ + + +++ + AE
Sbjct: 67 LYEQALQSYSYGALMDINEPRFPFHAAE 94
Score = 29.3 bits (66), Expect = 1.7
Identities = 8/44 (18%), Positives = 14/44 (31%), Gaps = 2/44 (4%)
Query: 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYS--NRAAAYLEL 536
+ + A + + A L + + RA A LE
Sbjct: 92 AAECHLQLGDLDGAESGFYSARALAAAQPAHEALAARAGAMLEA 135
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide
repeat, TPR, chapero virulence; 2.15A {Shigella
flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Length = 151
Score = 82.9 bits (205), Expect = 6e-19
Identities = 19/117 (16%), Positives = 39/117 (33%)
Query: 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDC 546
D + + + + +A ++ + + Y AA Y FQQA +
Sbjct: 34 DMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLY 93
Query: 547 SKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAANLAEKRLRKL 603
+ +L K + G + L +A + F+ + K A+ L +
Sbjct: 94 AVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEKLKIKAQSYLDAI 150
Score = 53.6 bits (129), Expect = 1e-08
Identities = 10/88 (11%), Positives = 24/88 (27%), Gaps = 2/88 (2%)
Query: 512 YSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREALF 571
+ + + A + G ++AE D NV + +
Sbjct: 25 LKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKE 84
Query: 572 CYNEALQDFKHAMVLEPQNKAA--NLAE 597
+ +A + A L + + +
Sbjct: 85 QFQQAADLYAVAFALGKNDYTPVFHTGQ 112
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase
110; OGT, glcnac, nucleoporin, O-linked glycosylation,
TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP:
a.118.8.1
Length = 388
Score = 86.1 bits (214), Expect = 3e-18
Identities = 26/112 (23%), Positives = 46/112 (41%), Gaps = 2/112 (1%)
Query: 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDC 546
D + +L + F+ ++ +++ ++ + AIK N A YSN Y E G Q+A E
Sbjct: 31 DNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHY 90
Query: 547 SKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAA--NLA 596
+ L + Y+ A A A+Q + A+ P +L
Sbjct: 91 RHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLG 142
Score = 82.2 bits (204), Expect = 6e-17
Identities = 27/104 (25%), Positives = 42/104 (40%), Gaps = 2/104 (1%)
Query: 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDK 554
GN + + +++AV Y A+ L+ A + N A Y E G A + + I L
Sbjct: 209 LGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQP 268
Query: 555 KNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAA--NLA 596
AY A + EA + A+ L P + + NLA
Sbjct: 269 HFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLA 312
Score = 80.7 bits (200), Expect = 1e-16
Identities = 24/104 (23%), Positives = 39/104 (37%), Gaps = 2/104 (1%)
Query: 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDK 554
GN + Q +A+ +Y A++L Y N AAA + G + A + + +
Sbjct: 73 LGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNP 132
Query: 555 KNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAA--NLA 596
G +AL EA + A+ +P A NL
Sbjct: 133 DLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLG 176
Score = 80.7 bits (200), Expect = 2e-16
Identities = 23/104 (22%), Positives = 42/104 (40%), Gaps = 2/104 (1%)
Query: 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDK 554
NA + +A + Y+ A++L T A +N A E G ++A K + +
Sbjct: 277 LANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFP 336
Query: 555 KNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAA--NLA 596
+ A+ + + EAL +K A+ + P A N+
Sbjct: 337 EFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMG 380
Score = 79.9 bits (198), Expect = 3e-16
Identities = 23/104 (22%), Positives = 43/104 (41%), Gaps = 2/104 (1%)
Query: 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDK 554
++ + A++ Y AI+L Y N A A E G +AE+ + + L
Sbjct: 243 LACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCP 302
Query: 555 KNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAA--NLA 596
+ + + EA++ ++ A+ + P+ AA NLA
Sbjct: 303 THADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLA 346
Score = 79.5 bits (197), Expect = 4e-16
Identities = 19/104 (18%), Positives = 38/104 (36%), Gaps = 2/104 (1%)
Query: 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDK 554
G + A++++ +A+ L+ Y N E F +A + +SL
Sbjct: 175 LGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSP 234
Query: 555 KNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAA--NLA 596
+ + + A+ ++ A+ L+P A NLA
Sbjct: 235 NHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLA 278
Score = 77.6 bits (192), Expect = 2e-15
Identities = 24/104 (23%), Positives = 41/104 (39%), Gaps = 2/104 (1%)
Query: 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDK 554
GN + +A Y +AI+ A +SN + G A K ++LD
Sbjct: 141 LGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDP 200
Query: 555 KNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAA--NLA 596
+ AY+ G + ++ A+ + A+ L P + NLA
Sbjct: 201 NFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLA 244
Score = 76.4 bits (189), Expect = 4e-15
Identities = 23/104 (22%), Positives = 34/104 (32%), Gaps = 2/104 (1%)
Query: 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDK 554
A AV Y A++ N S+ LG ++A+ K I
Sbjct: 107 LAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQP 166
Query: 555 KNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAA--NLA 596
A+ G A A+ F+ A+ L+P A NL
Sbjct: 167 NFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLG 210
Score = 75.3 bits (186), Expect = 1e-14
Identities = 15/105 (14%), Positives = 39/105 (37%), Gaps = 2/105 (1%)
Query: 494 EKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLD 553
E + ++ + A + + + + ++ + + ++ + I +
Sbjct: 4 ELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN 63
Query: 554 KKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAA--NLA 596
+AY G + EA++ ++HA+ L+P NLA
Sbjct: 64 PLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLA 108
Score = 62.2 bits (152), Expect = 2e-10
Identities = 16/76 (21%), Positives = 30/76 (39%)
Query: 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDK 554
N + +AV Y +A+++ A +SN A+ + G Q+A + I +
Sbjct: 311 LANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISP 370
Query: 555 KNVKAYLRRGTAREAL 570
AY G + +
Sbjct: 371 TFADAYSNMGNTLKEM 386
Score = 56.0 bits (136), Expect = 2e-08
Identities = 13/73 (17%), Positives = 21/73 (28%), Gaps = 2/73 (2%)
Query: 526 YSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMV 585
A + G F+ AE C + + N L + + + A+
Sbjct: 2 PMELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIK 61
Query: 586 LEPQNKAA--NLA 596
P A NL
Sbjct: 62 QNPLLAEAYSNLG 74
Score = 41.8 bits (99), Expect = 5e-04
Identities = 11/43 (25%), Positives = 21/43 (48%)
Query: 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELG 537
+ + + +A+ +Y EAI+++ T A YSN E+
Sbjct: 345 LASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQ 387
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein
structure initiative, northeast structural genomics
consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Length = 272
Score = 84.2 bits (209), Expect = 3e-18
Identities = 21/99 (21%), Positives = 33/99 (33%)
Query: 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDK 554
G K Q + A+ Y A+ + T Y + + G F A + K I
Sbjct: 80 YGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTT 139
Query: 555 KNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAA 593
+ K + G A Y +A F + L+P
Sbjct: 140 TDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIYIG 178
Score = 82.3 bits (204), Expect = 1e-17
Identities = 17/111 (15%), Positives = 35/111 (31%), Gaps = 3/111 (2%)
Query: 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDC 546
++ + G+ + + A+ Y + I+ T + AY + +A+
Sbjct: 106 TRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSF 165
Query: 547 SKTISLDKKNVKAYLRRGTAREAL---FCYNEALQDFKHAMVLEPQNKAAN 594
K + L YL R A A A ++ + + A
Sbjct: 166 VKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKY 216
Score = 81.2 bits (201), Expect = 3e-17
Identities = 17/107 (15%), Positives = 38/107 (35%), Gaps = 5/107 (4%)
Query: 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCS---KTIS 551
+ FK + +A+ +++ S Y+ RA Y EL + A++D ++
Sbjct: 9 YADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVN 68
Query: 552 LDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAA--NLA 596
K + G + A+Q ++ A+ + +
Sbjct: 69 ATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIG 115
Score = 79.2 bits (196), Expect = 1e-16
Identities = 10/115 (8%), Positives = 34/115 (29%), Gaps = 5/115 (4%)
Query: 487 DASELLKEKGNAAFKGKQWNKAVNY---YSEAIKLNGTSATYYSNRAAAYLELGCFQQAE 543
++ + + ++ +++ A Y + + + ++ G A
Sbjct: 35 NSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQDSLAI 94
Query: 544 EDCSKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAA--NLA 596
+ + D + Y + G+ + A+Q + + + L
Sbjct: 95 QQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELG 149
Score = 71.5 bits (176), Expect = 6e-14
Identities = 21/110 (19%), Positives = 38/110 (34%), Gaps = 11/110 (10%)
Query: 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGC---FQQAEEDCSKTIS 551
G A + K++ KA + + + ++L Y RA A A+ K I
Sbjct: 148 LGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIE 207
Query: 552 LDKKN--------VKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAA 593
+ ++A +A +K+ + L+P NK A
Sbjct: 208 VCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKA 257
Score = 52.3 bits (126), Expect = 1e-07
Identities = 14/83 (16%), Positives = 22/83 (26%), Gaps = 11/83 (13%)
Query: 495 KGNAAFKGKQWNK---AVNYYSEAIKLNGTSATY--------YSNRAAAYLELGCFQQAE 543
+ A K A YY + I++ A Y +A+
Sbjct: 182 RARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKAD 241
Query: 544 EDCSKTISLDKKNVKAYLRRGTA 566
++LD N KA
Sbjct: 242 AAWKNILALDPTNKKAIDGLKMK 264
Score = 50.3 bits (121), Expect = 6e-07
Identities = 12/75 (16%), Positives = 23/75 (30%), Gaps = 3/75 (4%)
Query: 522 SATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEALQD-- 579
+ A + + +A E +K + + Y RR L Y+ A +D
Sbjct: 2 NDDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIE 61
Query: 580 -FKHAMVLEPQNKAA 593
+ + A
Sbjct: 62 TYFSKVNATKAKSAD 76
Score = 37.6 bits (88), Expect = 0.007
Identities = 5/65 (7%), Positives = 13/65 (20%)
Query: 473 ASNLVPLPDTNGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAA 532
+ + E + + KA + + L+ T+
Sbjct: 205 LIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMK 264
Query: 533 YLELG 537
Sbjct: 265 LEHHH 269
Score = 30.7 bits (70), Expect = 1.1
Identities = 6/39 (15%), Positives = 10/39 (25%)
Query: 556 NVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAAN 594
N R Y EA++ F + +
Sbjct: 2 NDDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIY 40
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte
oxidase factor, SH3 domain, repeat, TPR repeat cell
cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1
PDB: 1wm5_A 1e96_B*
Length = 213
Score = 80.9 bits (200), Expect = 1e-17
Identities = 24/98 (24%), Positives = 43/98 (43%), Gaps = 3/98 (3%)
Query: 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDK 554
+G A K W A++ +S + + N Y L +AE+ +++I+ DK
Sbjct: 12 EGVLAADKKDWKGALDAFS---AVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDK 68
Query: 555 KNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKA 592
AY +RG Y+ A++D K A++ N+
Sbjct: 69 HLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQL 106
Score = 52.8 bits (127), Expect = 6e-08
Identities = 21/132 (15%), Positives = 47/132 (35%), Gaps = 40/132 (30%)
Query: 495 KGNAAFKGKQWNKAVNYYSEAIK-LNGTSATYYS---------------NRAAAYLELGC 538
+G ++ ++++ A+ EA+ L G Y N A Y +
Sbjct: 77 RGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEE 136
Query: 539 FQQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEP---------- 588
+++AEE + S+ + + + ++A++ + EP
Sbjct: 137 WKKAEEQLALATSMKSEPRHSKI------------DKAMECVWKQKLYEPVVIPVGRLFR 184
Query: 589 --QNKAANLAEK 598
+ + A LA+K
Sbjct: 185 PNERQVAQLAKK 196
Score = 47.0 bits (112), Expect = 4e-06
Identities = 10/71 (14%), Positives = 21/71 (29%), Gaps = 3/71 (4%)
Query: 523 ATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKH 582
A N + ++ A + S + + + G L EA + F
Sbjct: 6 AISLWNEGVLAADKKDWKGALDAFSA---VQDPHSRICFNIGCMYTILKNMTEAEKAFTR 62
Query: 583 AMVLEPQNKAA 593
++ + A
Sbjct: 63 SINRDKHLAVA 73
Score = 33.5 bits (77), Expect = 0.12
Identities = 9/49 (18%), Positives = 17/49 (34%)
Query: 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLE 535
A E+L K ++W KA + A + ++A +
Sbjct: 119 FACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRHSKIDKAMECVW 167
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown
function, PSI-2, protein structure initiative; NMR
{Methanococcus maripaludis}
Length = 112
Score = 77.1 bits (191), Expect = 2e-17
Identities = 14/98 (14%), Positives = 42/98 (42%), Gaps = 2/98 (2%)
Query: 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISL-- 552
+G + + ++++ + +AI+L+ + Y+ + A L +++A + + I++
Sbjct: 12 EGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIE 71
Query: 553 DKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQN 590
D+ N + + A + + + LE +
Sbjct: 72 DEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHHH 109
Score = 55.5 bits (135), Expect = 9e-10
Identities = 14/67 (20%), Positives = 28/67 (41%)
Query: 522 SATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEALQDFK 581
+ Y + G + ++ + K I LD + K +L +G A L Y EA+ +
Sbjct: 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYN 64
Query: 582 HAMVLEP 588
+ + +
Sbjct: 65 YVINVIE 71
Score = 33.6 bits (78), Expect = 0.038
Identities = 9/42 (21%), Positives = 19/42 (45%)
Query: 552 LDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAA 593
+ +N + Y G + Y E++ F+ A+ L+P+
Sbjct: 1 MVDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKY 42
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown
function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Length = 275
Score = 81.2 bits (201), Expect = 3e-17
Identities = 31/139 (22%), Positives = 49/139 (35%), Gaps = 9/139 (6%)
Query: 462 LYDSLQEQVNIAS-----NLVPLPDTNGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAI 516
L +LQ++V +A L D A +LL E+G A N +S+A+
Sbjct: 15 LQPTLQQEVILARMEQILASRALTDDE---RA-QLLYERGVLYDSLGLRALARNDFSQAL 70
Query: 517 KLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEA 576
+ ++ + G F A E + LD A+L RG A A
Sbjct: 71 AIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLA 130
Query: 577 LQDFKHAMVLEPQNKAANL 595
D +P + +L
Sbjct: 131 QDDLLAFYQDDPNDPFRSL 149
Score = 67.7 bits (166), Expect = 1e-12
Identities = 19/110 (17%), Positives = 38/110 (34%), Gaps = 2/110 (1%)
Query: 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDK 554
G + ++ A + ++L+ T + NR A G + A++D D
Sbjct: 83 LGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDP 142
Query: 555 KNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAA-NLAEKRLRKL 603
+ L A + L +A + K + + N+ E L +
Sbjct: 143 NDPFRSLWLYLAEQKLD-EKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNI 191
Score = 62.7 bits (153), Expect = 5e-11
Identities = 11/87 (12%), Positives = 23/87 (26%), Gaps = 1/87 (1%)
Query: 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDK 554
GN + + + ++ L + YL LG A ++ +
Sbjct: 188 LGNISEQTL-MERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNV 246
Query: 555 KNVKAYLRRGTAREALFCYNEALQDFK 581
N + L + L +
Sbjct: 247 HNFVEHRYALLELSLLGQDQDDLAESD 273
Score = 56.5 bits (137), Expect = 5e-09
Identities = 13/98 (13%), Positives = 29/98 (29%), Gaps = 3/98 (3%)
Query: 499 AFKGKQWNKAVNYYSEAIKLNGTSATYYSNRA---AAYLELGCFQQAEEDCSKTISLDKK 555
A + +A + + + ++ E ++ + D + SL +
Sbjct: 154 AEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEH 213
Query: 556 NVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAA 593
+ G +L + A FK A+ N
Sbjct: 214 LSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVE 251
Score = 44.6 bits (106), Expect = 5e-05
Identities = 7/54 (12%), Positives = 14/54 (25%)
Query: 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSK 548
G + A + A+ N + + LG Q + +
Sbjct: 221 LGKYYLSLGDLDSATALFKLAVANNVHNFVEHRYALLELSLLGQDQDDLAESDQ 274
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP:
k.38.1.1
Length = 243
Score = 79.9 bits (198), Expect = 6e-17
Identities = 20/104 (19%), Positives = 42/104 (40%), Gaps = 2/104 (1%)
Query: 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDK 554
N + +A+ +Y +A++L+ ++AT Y Y+ +++A++ K +
Sbjct: 63 FANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGM 122
Query: 555 KNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAA--NLA 596
+N + GT L AL + A+ L + A
Sbjct: 123 ENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFG 166
Score = 79.5 bits (197), Expect = 6e-17
Identities = 18/104 (17%), Positives = 32/104 (30%), Gaps = 2/104 (1%)
Query: 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDK 554
G K +Q A+ Y A++LN G +A + D
Sbjct: 131 LGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDP 190
Query: 555 KNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAA--NLA 596
+ A+ G +AL+ A+ ++P + A
Sbjct: 191 GHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKK 234
Score = 79.1 bits (196), Expect = 9e-17
Identities = 15/99 (15%), Positives = 38/99 (38%)
Query: 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDK 554
GN + + +A + + +A++ + + ++L + A + + L++
Sbjct: 97 AGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNE 156
Query: 555 KNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAA 593
+ +A + G +EAL F +P + A
Sbjct: 157 NDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADA 195
Score = 79.1 bits (196), Expect = 1e-16
Identities = 23/103 (22%), Positives = 36/103 (34%), Gaps = 2/103 (1%)
Query: 496 GNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKK 555
+ + KA +++AI+ N A Y N A + ++A K + LD
Sbjct: 30 MGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSS 89
Query: 556 NVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAA--NLA 596
AY G Y EA F+ A+ +N L
Sbjct: 90 AATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLG 132
Score = 66.4 bits (163), Expect = 2e-12
Identities = 15/96 (15%), Positives = 35/96 (36%), Gaps = 6/96 (6%)
Query: 507 KAVNYYSEAIKLNGTSATYYSNRAAAYL----ELGCFQQAEEDCSKTISLDKKNVKAYLR 562
+ +++ + L + S + E G +++A E +K I +K++ Y+
Sbjct: 3 SSHHHHHHSSGLVPRGSHMASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYIN 62
Query: 563 RGTAREALFCYNEALQDFKHAMVLEPQNKAA--NLA 596
++ AL + A+ L+ A
Sbjct: 63 FANLLSSVNELERALAFYDKALELDSSAATAYYGAG 98
Score = 61.8 bits (151), Expect = 6e-11
Identities = 10/76 (13%), Positives = 25/76 (32%)
Query: 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDK 554
G ++A++ ++ + + A + N Y ++A E K I +
Sbjct: 165 FGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQP 224
Query: 555 KNVKAYLRRGTAREAL 570
++ A +
Sbjct: 225 DHMLALHAKKLLGHHH 240
Score = 37.5 bits (88), Expect = 0.007
Identities = 5/43 (11%), Positives = 10/43 (23%)
Query: 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELG 537
G + KA+ +AI + +
Sbjct: 199 AGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLLGHHHH 241
>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding
DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A
2kq5_A
Length = 499
Score = 81.3 bits (201), Expect = 2e-16
Identities = 19/124 (15%), Positives = 34/124 (27%), Gaps = 7/124 (5%)
Query: 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDC 546
+ + G + + + +A L ++ L Q+
Sbjct: 376 EQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQRLLPVL 435
Query: 547 SKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKA---ANL----AEKR 599
+ L + V A G R AL L A+ + A L A
Sbjct: 436 CQAHGLTPQQVVAIASNGGGRPALESIVAQLSRPDPALAALTNDHLVALACLGGRPALDA 495
Query: 600 LRKL 603
++KL
Sbjct: 496 VKKL 499
Score = 80.6 bits (199), Expect = 3e-16
Identities = 15/107 (14%), Positives = 27/107 (25%)
Query: 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDC 546
+ + + + +A L ++ L Q+
Sbjct: 342 QQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVL 401
Query: 547 SKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAA 593
+ L + V A ++AL L A L PQ A
Sbjct: 402 CQAHGLTPEQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQVVA 448
Score = 80.6 bits (199), Expect = 4e-16
Identities = 16/104 (15%), Positives = 28/104 (26%)
Query: 490 ELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKT 549
+ G + + + +A L ++ L Q+ +
Sbjct: 209 VAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQA 268
Query: 550 ISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAA 593
L + V A ++AL L A L PQ A
Sbjct: 269 HGLTPQQVVAIASNSGGKQALETVQRLLPVLCQAHGLTPQQVVA 312
Score = 79.4 bits (196), Expect = 7e-16
Identities = 16/107 (14%), Positives = 29/107 (27%)
Query: 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDC 546
+ G + + + +A L ++ L Q+
Sbjct: 308 QQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVL 367
Query: 547 SKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAA 593
+ L + V A G ++AL L A L P+ A
Sbjct: 368 CQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPEQVVA 414
Score = 79.4 bits (196), Expect = 8e-16
Identities = 17/107 (15%), Positives = 30/107 (28%)
Query: 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDC 546
+ G + + + +A L ++ + L Q+
Sbjct: 240 QQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNSGGKQALETVQRLLPVL 299
Query: 547 SKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAA 593
+ L + V A G ++AL L A L PQ A
Sbjct: 300 CQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVA 346
Score = 79.0 bits (195), Expect = 1e-15
Identities = 17/104 (16%), Positives = 29/104 (27%)
Query: 490 ELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKT 549
+ G + + + +A L ++ L Q+ +
Sbjct: 175 VAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQA 234
Query: 550 ISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAA 593
L + V A G ++AL L A L PQ A
Sbjct: 235 HGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVA 278
Score = 77.5 bits (191), Expect = 3e-15
Identities = 16/104 (15%), Positives = 27/104 (25%)
Query: 490 ELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKT 549
+ + + + +A L ++ L Q +
Sbjct: 107 VAIASHDGGKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQALLPVLCQA 166
Query: 550 ISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAA 593
L + V A G ++AL L A L PQ A
Sbjct: 167 HGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVA 210
Score = 77.1 bits (190), Expect = 4e-15
Identities = 14/99 (14%), Positives = 26/99 (26%)
Query: 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDK 554
+ + + +A L ++ L Q+ + L
Sbjct: 282 NSGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTP 341
Query: 555 KNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAA 593
+ V A ++AL L A L P+ A
Sbjct: 342 QQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQVVA 380
Score = 77.1 bits (190), Expect = 4e-15
Identities = 16/107 (14%), Positives = 28/107 (26%)
Query: 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDC 546
+ + + + +A L ++ L Q+
Sbjct: 138 EQVVAIASHDGGKQALETVQALLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVL 197
Query: 547 SKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAA 593
+ L + V A G ++AL L A L PQ A
Sbjct: 198 CQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVA 244
Score = 76.7 bits (189), Expect = 5e-15
Identities = 14/104 (13%), Positives = 27/104 (25%)
Query: 490 ELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKT 549
+ + + + +A L ++ L Q+ +
Sbjct: 73 VAIASHDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQA 132
Query: 550 ISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAA 593
L + V A ++AL L A L P+ A
Sbjct: 133 HGLTPEQVVAIASHDGGKQALETVQALLPVLCQAHGLTPEQVVA 176
Score = 68.6 bits (168), Expect = 2e-12
Identities = 18/101 (17%), Positives = 30/101 (29%), Gaps = 5/101 (4%)
Query: 498 AAFKGKQWNKAVNYYSEA-----IKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISL 552
A G +AV+ + A + L ++ L Q+ + L
Sbjct: 42 AKRGGVTAVEAVHAWRNALTGAPLNLTPEQVVAIASHDGGKQALETVQRLLPVLCQAHGL 101
Query: 553 DKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAA 593
+ V A ++AL L A L P+ A
Sbjct: 102 TPQQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQVVA 142
Score = 52.1 bits (125), Expect = 3e-07
Identities = 15/108 (13%), Positives = 27/108 (25%)
Query: 486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEED 545
++ + A A ++L+ + R
Sbjct: 1 LEHHHHHHQWSGARALEALLTVAGELRGPPLQLDTGQLLKIAKRGGVTAVEAVHAWRNAL 60
Query: 546 CSKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAA 593
++L + V A ++AL L A L PQ A
Sbjct: 61 TGAPLNLTPEQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQVVA 108
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing
protein, structur genomics, joint center for structural
genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Length = 208
Score = 76.7 bits (189), Expect = 3e-16
Identities = 25/122 (20%), Positives = 48/122 (39%), Gaps = 16/122 (13%)
Query: 490 ELLKEKGNAAFKGKQWNKAVNYYSEAIKLN----------------GTSATYYSNRAAAY 533
+ + +K +AA + Q +AV+Y+ + I LN S+ + A AY
Sbjct: 5 DEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAY 64
Query: 534 LELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAA 593
+ + +A + + NV + +AL+ ++ + LE N AA
Sbjct: 65 KKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAA 124
Query: 594 NL 595
N+
Sbjct: 125 NI 126
Score = 76.7 bits (189), Expect = 4e-16
Identities = 19/107 (17%), Positives = 39/107 (36%), Gaps = 1/107 (0%)
Query: 488 ASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCS 547
+S+L E A K + ++KA +Y E ++ + A + G + A
Sbjct: 53 SSKLATELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYE 112
Query: 548 KTISLDKKNVKAYLRRGTA-REALFCYNEALQDFKHAMVLEPQNKAA 593
K + L+ N+ A + G + L+ + + + A
Sbjct: 113 KILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYA 159
Score = 72.5 bits (178), Expect = 8e-15
Identities = 17/109 (15%), Positives = 35/109 (32%), Gaps = 1/109 (0%)
Query: 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGC-FQQAEED 545
+ + L+ Q A+ Y + ++L + Y ++ E
Sbjct: 86 NNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLET 145
Query: 546 CSKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAAN 594
K +S K A R G ++ Y +A + ++ P +A
Sbjct: 146 DYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTEAQK 194
Score = 45.9 bits (109), Expect = 1e-05
Identities = 18/96 (18%), Positives = 31/96 (32%), Gaps = 18/96 (18%)
Query: 520 GTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREALFC------- 572
G S + +A +E G QA +TI+L+ + Y + +
Sbjct: 1 GQSVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATEL 60
Query: 573 ---------YNEALQDFKHAMVLEPQNKAA--NLAE 597
Y++A +K + P N AE
Sbjct: 61 ALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAE 96
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT
protein-protein interactions, protein binding; 2.00A
{Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A
3asg_A 3ash_A 3as8_A 3asf_A
Length = 186
Score = 74.4 bits (184), Expect = 1e-15
Identities = 18/103 (17%), Positives = 36/103 (34%), Gaps = 2/103 (1%)
Query: 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDK 554
KG + K ++++AV + + + AY++ G + E ++++
Sbjct: 14 KGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAP 73
Query: 555 KNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAA--NL 595
NVK G + Y+ A+ P N L
Sbjct: 74 DNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRL 116
Score = 72.1 bits (178), Expect = 7e-15
Identities = 21/102 (20%), Positives = 38/102 (37%), Gaps = 1/102 (0%)
Query: 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDK 554
G + ++++ AV + + N + A LG F +A + + L
Sbjct: 82 LGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRP 141
Query: 555 KNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAANLA 596
K + + E + + EAL FK A L+ + LA
Sbjct: 142 NEGKVHRAIAFSYEQMGRHEEALPHFKKANELDEGA-SVELA 182
Score = 72.1 bits (178), Expect = 8e-15
Identities = 19/104 (18%), Positives = 36/104 (34%), Gaps = 2/104 (1%)
Query: 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDK 554
G A K ++ ++ + + Y+++ + A K +
Sbjct: 48 LGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANP 107
Query: 555 KNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAA--NLA 596
N R G A + L ++EA+ FK A+ L P +A
Sbjct: 108 INFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIA 151
Score = 57.1 bits (139), Expect = 1e-09
Identities = 13/82 (15%), Positives = 28/82 (34%), Gaps = 2/82 (2%)
Query: 516 IKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNE 575
+ + YY ++ ++ + G + QA + D +V L G A +
Sbjct: 1 MGNDDIRQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDR 60
Query: 576 ALQDFKHAMVLEPQNKAA--NL 595
+ + ++ P N L
Sbjct: 61 GTELLERSLADAPDNVKVATVL 82
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin
ligase; 2.60A {Schizosaccharomyces pombe}
Length = 597
Score = 79.1 bits (195), Expect = 1e-15
Identities = 15/96 (15%), Positives = 32/96 (33%)
Query: 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDK 554
G + ++A Y+S++ ++ + A ++ G QA + L +
Sbjct: 379 VGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQ 438
Query: 555 KNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQN 590
YL G L A + + + L +
Sbjct: 439 GTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYD 474
Score = 72.9 bits (179), Expect = 1e-13
Identities = 21/118 (17%), Positives = 39/118 (33%), Gaps = 9/118 (7%)
Query: 489 SELLKEKGNAAFKGKQWNKAVNYYSEAIKL-------NGTSATYYSNRAAAYLELGCFQQ 541
LL E G AF A+N++ A+ L A ++N AY +L +
Sbjct: 475 PLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDA 534
Query: 542 AEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAA--NLAE 597
A + ++ + L + + A+ ++ + P A L
Sbjct: 535 AIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKR 592
Score = 72.2 bits (177), Expect = 2e-13
Identities = 21/134 (15%), Positives = 50/134 (37%), Gaps = 6/134 (4%)
Query: 460 LDLYDSLQEQVNIASNLVPLPDTNGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLN 519
D L+ + S++ L + S+LL K + F ++ + ++ ++++
Sbjct: 282 TSHEDELRRAEDYLSSINGLEKS------SDLLLCKADTLFVRSRFIDVLAITTKILEID 335
Query: 520 GTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEALQD 579
+ Y A+ E G + + + + +L G + +EA +
Sbjct: 336 PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRY 395
Query: 580 FKHAMVLEPQNKAA 593
F + ++PQ A
Sbjct: 396 FSKSSTMDPQFGPA 409
Score = 71.0 bits (174), Expect = 5e-13
Identities = 13/101 (12%), Positives = 37/101 (36%)
Query: 490 ELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKT 549
++ + + + NK ++ + + A + YL + +A SK+
Sbjct: 340 DVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKS 399
Query: 550 ISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQN 590
++D + A++ + +++A+ + A L
Sbjct: 400 STMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGT 440
Score = 70.3 bits (172), Expect = 7e-13
Identities = 15/100 (15%), Positives = 40/100 (40%)
Query: 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDK 554
++ + ++A++ Y+ A +L + Y +++LG A E + +L +
Sbjct: 413 FAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQ 472
Query: 555 KNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAAN 594
+ G A+ F++A++L + ++
Sbjct: 473 YDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNE 512
Score = 69.5 bits (170), Expect = 1e-12
Identities = 14/126 (11%), Positives = 32/126 (25%)
Query: 465 SLQEQVNIASNLVPLPDTNGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSAT 524
+ E+ ++ L + L + + Y +I S+
Sbjct: 247 TADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSD 306
Query: 525 YYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAM 584
+A F +K + +D N+ Y + N+ +
Sbjct: 307 LLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLV 366
Query: 585 VLEPQN 590
P+
Sbjct: 367 DRHPEK 372
Score = 62.9 bits (153), Expect = 2e-10
Identities = 13/72 (18%), Positives = 30/72 (41%)
Query: 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDK 554
G+A K K ++ A++ ++ + L+ A ++ A YL A +++++
Sbjct: 522 LGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISP 581
Query: 555 KNVKAYLRRGTA 566
+ A A
Sbjct: 582 NEIMASDLLKRA 593
Score = 50.2 bits (120), Expect = 1e-06
Identities = 21/173 (12%), Positives = 46/173 (26%), Gaps = 40/173 (23%)
Query: 460 LDLYDSLQEQVNIASNLVPLPDTNGSID-ASELLKEKGNAAFKGKQWNKAVNYYSEAIKL 518
L+L N L +G I + + +G +++A Y EA+ +
Sbjct: 170 LNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMV 229
Query: 519 NGTSA--------------------------------------TYYSNRAAAYLELGCFQ 540
+ + Y + +
Sbjct: 230 DAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELR 289
Query: 541 QAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAA 593
+AE D +I+ +K+ L + + + L + ++P N
Sbjct: 290 RAE-DYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDV 341
Score = 41.0 bits (96), Expect = 0.001
Identities = 20/126 (15%), Positives = 38/126 (30%), Gaps = 5/126 (3%)
Query: 480 PDTNGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCF 539
S+ + L+ + A +Q+ A + + + G + A Y G +
Sbjct: 75 AQNTDSLSREDYLRLWRHDALMQQQYKCAAFVGEKVLDITGNPNDAF-WLAQVYCCTGDY 133
Query: 540 QQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAANLAEKR 599
+A+ L ++ L+ + AL P K A K
Sbjct: 134 ARAKC-LLTKEDLYNRSSACRYLAAFCLVKLYDWQGALNLLGET---NPFRKDEKNANKL 189
Query: 600 LRKLIG 605
L + G
Sbjct: 190 LMQDGG 195
Score = 32.9 bits (75), Expect = 0.30
Identities = 5/41 (12%), Positives = 11/41 (26%)
Query: 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLE 535
K A+ + E++ ++ A E
Sbjct: 556 IALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRALEE 596
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide
repeat, type III secretion; HET: MLY; 1.95A {Yersinia
enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Length = 148
Score = 72.6 bits (178), Expect = 2e-15
Identities = 15/118 (12%), Positives = 30/118 (25%)
Query: 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDC 546
D E L ++ + A + L+ + ++ A +G + A
Sbjct: 19 DTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSY 78
Query: 547 SKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAANLAEKRLRKLI 604
S +D + EA A L R+ ++
Sbjct: 79 SYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFXELSTRVSSML 136
Score = 54.5 bits (131), Expect = 4e-09
Identities = 12/82 (14%), Positives = 32/82 (39%)
Query: 512 YSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREALF 571
+ +++ + + A + G ++ A LD + + +L G R+A+
Sbjct: 10 IAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMG 69
Query: 572 CYNEALQDFKHAMVLEPQNKAA 593
Y+ A+ + + V++
Sbjct: 70 QYDLAIHSYSYGAVMDIXEPRF 91
Score = 28.0 bits (62), Expect = 5.5
Identities = 6/57 (10%), Positives = 15/57 (26%)
Query: 537 GCFQQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAA 593
G + + ++ + Y +A F+ VL+ +
Sbjct: 1 GPLGSGGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRF 57
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat,
consensus protein, superhelix, de novo protein; 2.30A
{Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Length = 136
Score = 72.0 bits (178), Expect = 3e-15
Identities = 29/96 (30%), Positives = 56/96 (58%)
Query: 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDK 554
GNA +K +++A+ YY +A++L+ SA + N AY + G + +A E K + LD
Sbjct: 41 LGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 100
Query: 555 KNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQN 590
++ +A+ G A Y+EA++ ++ A+ L+P++
Sbjct: 101 RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS 136
Score = 71.3 bits (176), Expect = 4e-15
Identities = 33/113 (29%), Positives = 61/113 (53%), Gaps = 4/113 (3%)
Query: 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDK 554
GNA +K +++A+ YY +A++L+ SA + N AY + G + +A E K + LD
Sbjct: 7 LGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 66
Query: 555 KNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAA--NL--AEKRLRKL 603
++ +A+ G A Y+EA++ ++ A+ L+P++ A NL A +
Sbjct: 67 RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDY 119
Score = 54.3 bits (132), Expect = 4e-09
Identities = 22/76 (28%), Positives = 40/76 (52%), Gaps = 2/76 (2%)
Query: 523 ATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKH 582
A + N AY + G + +A E K + LD ++ +A+ G A Y+EA++ ++
Sbjct: 1 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQK 60
Query: 583 AMVLEPQNKAA--NLA 596
A+ L+P++ A NL
Sbjct: 61 ALELDPRSAEAWYNLG 76
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A
{Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Length = 125
Score = 69.0 bits (170), Expect = 2e-14
Identities = 33/103 (32%), Positives = 57/103 (55%), Gaps = 2/103 (1%)
Query: 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDK 554
GNA +K +++A+ YY +A++L+ +A + N AY + G + +A E K + LD
Sbjct: 15 LGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 74
Query: 555 KNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAA--NL 595
N +A+ G A Y+EA++ ++ A+ L+P N A NL
Sbjct: 75 NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNL 117
Score = 57.8 bits (141), Expect = 2e-10
Identities = 23/76 (30%), Positives = 41/76 (53%)
Query: 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDK 554
GNA +K +++A+ YY +A++L+ +A + N AY + G + +A E K + LD
Sbjct: 49 LGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 108
Query: 555 KNVKAYLRRGTAREAL 570
N +A G A++
Sbjct: 109 NNAEAKQNLGNAKQKQ 124
Score = 52.4 bits (127), Expect = 2e-08
Identities = 24/75 (32%), Positives = 38/75 (50%), Gaps = 2/75 (2%)
Query: 523 ATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKH 582
A + N AY + G + +A E K + LD N +A+ G A Y+EA++ ++
Sbjct: 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQK 68
Query: 583 AMVLEPQNKAA--NL 595
A+ L+P N A NL
Sbjct: 69 ALELDPNNAEAWYNL 83
Score = 34.7 bits (81), Expect = 0.020
Identities = 13/43 (30%), Positives = 24/43 (55%)
Query: 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELG 537
GNA +K +++A+ YY +A++L+ +A N A + G
Sbjct: 83 LGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR
protein, peroxin 5, PEX5, PTS1 binding domain,
protein-peptide complex, receptor; 2.00A {Trypanosoma
brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Length = 327
Score = 73.1 bits (180), Expect = 3e-14
Identities = 12/99 (12%), Positives = 33/99 (33%)
Query: 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDK 554
G ++ A A++L A ++ A Q+A + ++ + ++
Sbjct: 178 LGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINP 237
Query: 555 KNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAA 593
V+ + + Y+ A + A+ ++
Sbjct: 238 GYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTP 276
Score = 73.1 bits (180), Expect = 3e-14
Identities = 15/104 (14%), Positives = 32/104 (30%)
Query: 490 ELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKT 549
E E+G + K +A + + + + E A +
Sbjct: 22 ENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHA 81
Query: 550 ISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAA 593
LD K++ + + N AL + ++ +PQ +
Sbjct: 82 RMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQL 125
Score = 68.1 bits (167), Expect = 2e-12
Identities = 14/104 (13%), Positives = 36/104 (34%), Gaps = 2/104 (1%)
Query: 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDK 554
+ ++ + A+++N A +++ Y + A + + + L
Sbjct: 144 EDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRP 203
Query: 555 KNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAA--NLA 596
+ + + + G EAL + A+ + P N+A
Sbjct: 204 DDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMA 247
Score = 63.1 bits (154), Expect = 6e-11
Identities = 13/106 (12%), Positives = 29/106 (27%), Gaps = 19/106 (17%)
Query: 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDK 554
G G + +A++ Y+ A+ +N N A +Y + + A + + I +
Sbjct: 212 LGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQV 271
Query: 555 KNVKAYLRRGTAR-------------------EALFCYNEALQDFK 581
Y + ++ F
Sbjct: 272 GGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVEPFA 317
Score = 60.8 bits (148), Expect = 4e-10
Identities = 12/119 (10%), Positives = 30/119 (25%), Gaps = 17/119 (14%)
Query: 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDK 554
G + ++ A+ + A L+ ++ A ++ A +
Sbjct: 61 LGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQP 120
Query: 555 KNVKAYLRRGTAREALFC---------------YNEALQDFKHAMVLEPQNKAA--NLA 596
+ + A + Y E A+ + P + +L
Sbjct: 121 QYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLG 179
Score = 57.7 bits (140), Expect = 4e-09
Identities = 14/95 (14%), Positives = 27/95 (28%), Gaps = 2/95 (2%)
Query: 504 QWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRR 563
+ Y + L+L +A + +A+
Sbjct: 2 HMLQNNTDYPFEANNPYMYHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSL 61
Query: 564 GTAREALFCYNEALQDFKHAMVLEPQNKAA--NLA 596
G + A+ HA +L+P++ A LA
Sbjct: 62 GLTQAENEKDGLAIIALNHARMLDPKDIAVHAALA 96
Score = 54.6 bits (132), Expect = 3e-08
Identities = 11/124 (8%), Positives = 29/124 (23%), Gaps = 21/124 (16%)
Query: 495 KGNAAFKGKQWNKAVNYYSEAIKLN---------------GTSATYYSNRAAAYLELGCF 539
+ N A+ + + + +
Sbjct: 95 LAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEY 154
Query: 540 QQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQ------NKAA 593
++ + ++ + + + G Y+ A + + A+ L P A
Sbjct: 155 RECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGA 214
Query: 594 NLAE 597
LA
Sbjct: 215 TLAN 218
Score = 29.6 bits (67), Expect = 2.7
Identities = 10/57 (17%), Positives = 17/57 (29%)
Query: 537 GCFQQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAA 593
G Q D + + + G + L EA F+ P+ + A
Sbjct: 1 GHMLQNNTDYPFEANNPYMYHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEA 57
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat,
TPR; 3.00A {Mus musculus}
Length = 365
Score = 72.8 bits (179), Expect = 5e-14
Identities = 15/99 (15%), Positives = 44/99 (44%)
Query: 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDK 554
G ++N+A++ ++ A+ + + ++ A ++A E ++ + +
Sbjct: 219 LGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQP 278
Query: 555 KNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAA 593
+++ G + L Y EA+ +F A+ L+ +++
Sbjct: 279 GFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQ 317
Score = 71.2 bits (175), Expect = 2e-13
Identities = 22/144 (15%), Positives = 44/144 (30%), Gaps = 3/144 (2%)
Query: 452 DKFLLDTVLDLYDSLQEQVNIASNLVPLP--DTNGSIDASELLKEKGNAAFKGKQWNKAV 509
++ + Q QV ++++ N D E+G K +
Sbjct: 27 EEMARRNWISENQEAQNQVTVSASEKGYYFHTENPFKDWPGAF-EEGLKRLKEGDLPVTI 85
Query: 510 NYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREA 569
+ AI + A + E Q A + + L N+KA + +
Sbjct: 86 LFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTN 145
Query: 570 LFCYNEALQDFKHAMVLEPQNKAA 593
+A + K+ + P+ K
Sbjct: 146 TSHQQDACEALKNWIKQNPKYKYL 169
Score = 66.6 bits (163), Expect = 6e-12
Identities = 14/110 (12%), Positives = 33/110 (30%), Gaps = 1/110 (0%)
Query: 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDC 546
+E + G + + A+ ++L + A +Y Q A E
Sbjct: 97 GDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEAL 156
Query: 547 SKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQ-NKAANL 595
I + K + + +++ D ++ +AA+
Sbjct: 157 KNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQ 206
Score = 66.6 bits (163), Expect = 6e-12
Identities = 17/113 (15%), Positives = 38/113 (33%), Gaps = 4/113 (3%)
Query: 488 ASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTS--ATYYSNRAAAYLELGCFQQAEED 545
+ L + + Y EA NG + + G F +A +
Sbjct: 176 SPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDA 235
Query: 546 CSKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAA--NLA 596
+ +++ ++ + R G EA++ + A+ ++P + NL
Sbjct: 236 FNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLG 288
Score = 61.2 bits (149), Expect = 3e-10
Identities = 18/105 (17%), Positives = 36/105 (34%), Gaps = 5/105 (4%)
Query: 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDK 554
G G + +AV Y+ A+++ N + + LG +++A + +SL +
Sbjct: 253 LGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQR 312
Query: 555 KNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAANLAEKR 599
K+ A + A+ L Q + A
Sbjct: 313 KSRNQQQVPHPAI-----SGNIWAALRIALSLMDQPELFQAANLG 352
Score = 48.9 bits (117), Expect = 3e-06
Identities = 16/121 (13%), Positives = 31/121 (25%), Gaps = 18/121 (14%)
Query: 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDK 554
+ A IK N N+ + ++ D S + +
Sbjct: 139 LAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKE 198
Query: 555 KNVKAYLRRGTAREALFCYN------------EALQDFKHAMVLEPQ------NKAANLA 596
++A + G + A+ F A+ + P+ A LA
Sbjct: 199 LYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLA 258
Query: 597 E 597
Sbjct: 259 N 259
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting
complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin,
ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Length = 330
Score = 72.3 bits (178), Expect = 6e-14
Identities = 18/97 (18%), Positives = 28/97 (28%), Gaps = 1/97 (1%)
Query: 495 KGNAAF-KGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLD 553
G G + A Y S+A L T + ++ QA L
Sbjct: 96 VGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM 155
Query: 554 KKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQN 590
K L G A + F A+ + P++
Sbjct: 156 KGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPED 192
Score = 70.4 bits (173), Expect = 2e-13
Identities = 19/120 (15%), Positives = 42/120 (35%), Gaps = 11/120 (9%)
Query: 489 SELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTS---------ATYYSNRAAAYLELGCF 539
++ E G AF+ +W A ++ +A++ +N +L +
Sbjct: 193 PFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKY 252
Query: 540 QQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAA--NLAE 597
+A + + + L +N Y G + + A+ F A+ L + + L
Sbjct: 253 AEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGH 312
Score = 66.5 bits (163), Expect = 4e-12
Identities = 20/103 (19%), Positives = 42/103 (40%)
Query: 478 PLPDTNGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELG 537
+ + LL G+ K K++ +A++Y+ +A+ L +A+ YS + +G
Sbjct: 225 AIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMG 284
Query: 538 CFQQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEALQDF 580
F+ A + + L + + + G E +EA
Sbjct: 285 NFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDSEAYIGA 327
Score = 66.2 bits (162), Expect = 6e-12
Identities = 21/113 (18%), Positives = 35/113 (30%), Gaps = 11/113 (9%)
Query: 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDK 554
G A ++S+A+ + + G ++ AE+ + K
Sbjct: 165 IGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIK 224
Query: 555 ---------KNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAA--NLA 596
K G L Y EAL + A+VL PQN + +
Sbjct: 225 AIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIG 277
Score = 66.2 bits (162), Expect = 7e-12
Identities = 15/104 (14%), Positives = 32/104 (30%)
Query: 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDK 554
G++ + ++A+ Y A +L Y + AE S+ +S+
Sbjct: 131 YGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAP 190
Query: 555 KNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAANLAEK 598
++ G + A + F A+ +K
Sbjct: 191 EDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDK 234
Score = 62.7 bits (153), Expect = 7e-11
Identities = 16/105 (15%), Positives = 36/105 (34%), Gaps = 1/105 (0%)
Query: 490 ELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGC-FQQAEEDCSK 548
L + + N+ + + L ++ + YL +G + A SK
Sbjct: 57 SCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSK 116
Query: 549 TISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAA 593
+L+K A++ G + +++A+ + A L
Sbjct: 117 ATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLP 161
Score = 62.7 bits (153), Expect = 8e-11
Identities = 15/108 (13%), Positives = 32/108 (29%), Gaps = 1/108 (0%)
Query: 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDC 546
+ +++ + + S ++ + A+ +EL +
Sbjct: 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLS 79
Query: 547 SKTISLDKKNVKAYLRRGTAREALFCYNE-ALQDFKHAMVLEPQNKAA 593
K + L N ++ G + NE A + A LE A
Sbjct: 80 HKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPA 127
Score = 57.3 bits (139), Expect = 4e-09
Identities = 11/81 (13%), Positives = 21/81 (25%)
Query: 510 NYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREA 569
E++ + + A + F+ + S + D +
Sbjct: 9 TVIPESVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVE 68
Query: 570 LFCYNEALQDFKHAMVLEPQN 590
L NE + L P N
Sbjct: 69 LNKANELFYLSHKLVDLYPSN 89
>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae}
Length = 1047
Score = 74.3 bits (182), Expect = 7e-14
Identities = 17/107 (15%), Positives = 28/107 (26%)
Query: 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDC 546
D + G + + + +A L ++ L Q+
Sbjct: 292 DQVVAIASHGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVL 351
Query: 547 SKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAA 593
+ L V A G ++AL L A L P A
Sbjct: 352 CQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQVVA 398
Score = 73.1 bits (179), Expect = 1e-13
Identities = 14/104 (13%), Positives = 25/104 (24%)
Query: 490 ELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKT 549
+ + + + +A L ++ L Q+ +
Sbjct: 193 VAIASNNGGKQALETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALETMQRLLPVLCQA 252
Query: 550 ISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAA 593
L V A ++AL L A L P A
Sbjct: 253 HGLPPDQVVAIASNIGGKQALETVQRLLPVLCQAHGLTPDQVVA 296
Score = 72.4 bits (177), Expect = 2e-13
Identities = 15/104 (14%), Positives = 26/104 (25%)
Query: 490 ELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKT 549
+ + + + +A L ++ L Q+ +
Sbjct: 227 VAIASHDGGKQALETMQRLLPVLCQAHGLPPDQVVAIASNIGGKQALETVQRLLPVLCQA 286
Query: 550 ISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAA 593
L V A G ++AL L A L P A
Sbjct: 287 HGLTPDQVVAIASHGGGKQALETVQRLLPVLCQAHGLTPDQVVA 330
Score = 72.0 bits (176), Expect = 3e-13
Identities = 14/104 (13%), Positives = 27/104 (25%)
Query: 490 ELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKT 549
+ + + + +A L ++ L Q+ +
Sbjct: 634 VAIASHDGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQA 693
Query: 550 ISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAA 593
L ++ V A ++AL L A L P A
Sbjct: 694 HGLTQEQVVAIASNNGGKQALETVQRLLPVLCQAHGLTPDQVVA 737
Score = 70.8 bits (173), Expect = 6e-13
Identities = 15/107 (14%), Positives = 26/107 (24%)
Query: 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDC 546
D + + + + +A L ++ L Q+
Sbjct: 258 DQVVAIASNIGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHGGGKQALETVQRLLPVL 317
Query: 547 SKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAA 593
+ L V A ++AL L A L P A
Sbjct: 318 CQAHGLTPDQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQVVA 364
Score = 70.1 bits (171), Expect = 1e-12
Identities = 16/107 (14%), Positives = 27/107 (25%)
Query: 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDC 546
D + G + + + +A L ++ L Q+
Sbjct: 563 DQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQVQVVAIASNIGGKQALETVQRLLPVL 622
Query: 547 SKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAA 593
+ L V A ++AL L A L P A
Sbjct: 623 CQAHGLTPAQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQVVA 669
Score = 68.1 bits (166), Expect = 5e-12
Identities = 14/102 (13%), Positives = 26/102 (25%)
Query: 492 LKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTIS 551
+ + + + +A L ++ L Q+ +
Sbjct: 602 IASNIGGKQALETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALETVQRLLPVLCQAHG 661
Query: 552 LDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAA 593
L V A G ++AL L A L + A
Sbjct: 662 LTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQEQVVA 703
Score = 68.1 bits (166), Expect = 5e-12
Identities = 17/107 (15%), Positives = 28/107 (26%)
Query: 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDC 546
D + G + + + +A L ++ L Q+
Sbjct: 665 DQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQEQVVAIASNNGGKQALETVQRLLPVL 724
Query: 547 SKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAA 593
+ L V A G ++AL L A L P A
Sbjct: 725 CQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPAQVVA 771
Score = 68.1 bits (166), Expect = 5e-12
Identities = 15/109 (13%), Positives = 26/109 (23%)
Query: 485 SIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEE 544
+ D + + + +A L ++ L Q+
Sbjct: 493 TPDQVVAIASNIGGKQALATVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLP 552
Query: 545 DCSKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAA 593
+ L V A G ++AL L A L A
Sbjct: 553 VLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQVQVVA 601
Score = 66.6 bits (162), Expect = 2e-11
Identities = 16/107 (14%), Positives = 28/107 (26%)
Query: 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDC 546
D + G + + + +A L ++ L Q+
Sbjct: 529 DQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVL 588
Query: 547 SKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAA 593
+ L + V A ++AL L A L P A
Sbjct: 589 CQAHGLTQVQVVAIASNIGGKQALETVQRLLPVLCQAHGLTPAQVVA 635
Score = 66.2 bits (161), Expect = 2e-11
Identities = 15/107 (14%), Positives = 26/107 (24%)
Query: 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDC 546
+ + + + +A L ++ L Q+
Sbjct: 461 AQVVAIASHDGGKQALETVQQLLPVLCQAHGLTPDQVVAIASNIGGKQALATVQRLLPVL 520
Query: 547 SKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAA 593
+ L V A G ++AL L A L P A
Sbjct: 521 CQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQVVA 567
Score = 65.4 bits (159), Expect = 3e-11
Identities = 16/107 (14%), Positives = 26/107 (24%), Gaps = 1/107 (0%)
Query: 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDC 546
D + + + + +A L ++ L Q+
Sbjct: 326 DQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVL 385
Query: 547 SKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAA 593
+ L V A G + AL L A L P A
Sbjct: 386 CQAHGLTPDQVVAIASNGGKQ-ALETVQRLLPVLCQAHGLTPDQVVA 431
Score = 65.1 bits (158), Expect = 4e-11
Identities = 15/107 (14%), Positives = 26/107 (24%), Gaps = 1/107 (0%)
Query: 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDC 546
D + G + + + +A L ++ L Q+
Sbjct: 360 DQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGKQ-ALETVQRLLPVL 418
Query: 547 SKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAA 593
+ L V A ++AL L L P A
Sbjct: 419 CQAHGLTPDQVVAIASHDGGKQALETVQRLLPVLCQTHGLTPAQVVA 465
Score = 63.5 bits (154), Expect = 1e-10
Identities = 15/107 (14%), Positives = 25/107 (23%)
Query: 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDC 546
D + + + + + L ++ L QQ
Sbjct: 427 DQVVAIASHDGGKQALETVQRLLPVLCQTHGLTPAQVVAIASHDGGKQALETVQQLLPVL 486
Query: 547 SKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAA 593
+ L V A ++AL L A L P A
Sbjct: 487 CQAHGLTPDQVVAIASNIGGKQALATVQRLLPVLCQAHGLTPDQVVA 533
Score = 62.7 bits (152), Expect = 3e-10
Identities = 15/90 (16%), Positives = 25/90 (27%)
Query: 504 QWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRR 563
+ + +A L ++ L Q+ +T L V A
Sbjct: 410 TVQRLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVLCQTHGLTPAQVVAIASH 469
Query: 564 GTAREALFCYNEALQDFKHAMVLEPQNKAA 593
++AL + L A L P A
Sbjct: 470 DGGKQALETVQQLLPVLCQAHGLTPDQVVA 499
Score = 61.2 bits (148), Expect = 7e-10
Identities = 14/90 (15%), Positives = 22/90 (24%), Gaps = 2/90 (2%)
Query: 504 QWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRR 563
A+ + L ++ L Q+ + L V A
Sbjct: 175 ASRNAL--TGAPLNLTPAQVVAIASNNGGKQALETVQRLLPVLCQAHGLTPAQVVAIASH 232
Query: 564 GTAREALFCYNEALQDFKHAMVLEPQNKAA 593
++AL L A L P A
Sbjct: 233 DGGKQALETMQRLLPVLCQAHGLPPDQVVA 262
Score = 60.8 bits (147), Expect = 8e-10
Identities = 12/107 (11%), Positives = 24/107 (22%)
Query: 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDC 546
+ + + + + +A L ++ L Q+
Sbjct: 699 EQVVAIASNNGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVL 758
Query: 547 SKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAA 593
+ L V A ++AL L L A
Sbjct: 759 CQAHGLTPAQVVAIASNIGGKQALETVQRLLPVLCQDHGLTLAQVVA 805
Score = 53.5 bits (128), Expect = 2e-07
Identities = 13/98 (13%), Positives = 24/98 (24%)
Query: 506 NKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGT 565
+ + +A L ++ L Q+ + L V A
Sbjct: 820 QRLLPVLCQAHGLTQDQVVAIASNIGGKQALETVQRLLPVLCQDHGLTPDQVVAIASNIG 879
Query: 566 AREALFCYNEALQDFKHAMVLEPQNKAANLAEKRLRKL 603
++AL L L A + + L
Sbjct: 880 GKQALETVQRLLPVLCQDHGLTLDQVVAIASNGGKQAL 917
Score = 51.2 bits (122), Expect = 8e-07
Identities = 15/119 (12%), Positives = 30/119 (25%)
Query: 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDC 546
D + G + + + +A L ++ L Q+
Sbjct: 733 DQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPAQVVAIASNIGGKQALETVQRLLPVL 792
Query: 547 SKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAANLAEKRLRKLIG 605
+ L V A ++AL L A L A + ++ +
Sbjct: 793 CQDHGLTLAQVVAIASNIGGKQALETVQRLLPVLCQAHGLTQDQVVAIASNIGGKQALE 851
Score = 46.2 bits (109), Expect = 3e-05
Identities = 15/86 (17%), Positives = 22/86 (25%), Gaps = 3/86 (3%)
Query: 508 AVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAR 567
V + L+ A + A L Q+ + L V A +
Sbjct: 892 PVLCQDHGLTLDQVVAIASNGGKQA---LETVQRLLPVLCQDHGLTPDQVVAIASNSGGK 948
Query: 568 EALFCYNEALQDFKHAMVLEPQNKAA 593
+AL L L P A
Sbjct: 949 QALETVQRLLPVLCQDHGLTPNQVVA 974
Score = 46.2 bits (109), Expect = 3e-05
Identities = 12/102 (11%), Positives = 24/102 (23%)
Query: 492 LKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTIS 551
+ + + + + L ++ L Q+ +
Sbjct: 772 IASNIGGKQALETVQRLLPVLCQDHGLTLAQVVAIASNIGGKQALETVQRLLPVLCQAHG 831
Query: 552 LDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAA 593
L + V A ++AL L L P A
Sbjct: 832 LTQDQVVAIASNIGGKQALETVQRLLPVLCQDHGLTPDQVVA 873
Score = 45.4 bits (107), Expect = 5e-05
Identities = 13/87 (14%), Positives = 21/87 (24%)
Query: 507 KAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTA 566
A ++L+ + R ++L V A
Sbjct: 142 DAGELRGPPLQLDTGQLVKIAKRGGVTAMEAVHASRNALTGAPLNLTPAQVVAIASNNGG 201
Query: 567 REALFCYNEALQDFKHAMVLEPQNKAA 593
++AL L A L P A
Sbjct: 202 KQALETVQRLLPVLCQAHGLTPAQVVA 228
>2kat_A Uncharacterized protein; NESG, structure, structural genomics,
PSI-2, protein structure initiative; NMR {Bordetella
parapertussis}
Length = 115
Score = 67.4 bits (165), Expect = 8e-14
Identities = 12/101 (11%), Positives = 23/101 (22%), Gaps = 3/101 (2%)
Query: 506 NKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGT 565
+ + Y E F A + D A+ G
Sbjct: 2 QAITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGK 61
Query: 566 AREALFCYNEALQDFKHAMVLEPQN---KAANLAEKRLRKL 603
+ A Q ++ + + + LR+L
Sbjct: 62 TLQGQGDRAGARQAWESGLAAAQSRGDQQVVKELQVFLRRL 102
Score = 46.9 bits (112), Expect = 9e-07
Identities = 13/87 (14%), Positives = 32/87 (36%), Gaps = 8/87 (9%)
Query: 496 GNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLD-- 553
G + +Q++ A+ + A+ + T + + G A + ++
Sbjct: 26 GKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAAAQS 85
Query: 554 ------KKNVKAYLRRGTAREALFCYN 574
K ++ +LRR +AL ++
Sbjct: 86 RGDQQVVKELQVFLRRLAREDALEHHH 112
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 72.0 bits (176), Expect = 3e-13
Identities = 91/518 (17%), Positives = 144/518 (27%), Gaps = 205/518 (39%)
Query: 60 PFPQPPPPA----ARQPLAGLKFAIKDVFDVKGYVTGFGSPD--WK--RDHHEAERTAVV 111
PF + A + A L AI F G G G+ D ++ RD ++ +
Sbjct: 136 PFDKKSNSALFRAVGEGNAQL-VAI---F---G---GQGNTDDYFEELRDLYQTYHV--L 183
Query: 112 VTLLLKNGATCIGKTVLDEFAFGITGENKHYGTPVNP----QMPSHIPGGSSSGSAVAVA 167
V L+K A L E K + +N + PS+ P S ++
Sbjct: 184 VGDLIKFSAE-----TLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSI-PIS 237
Query: 168 ------AQLVDFALGTDTIGCVRVPASFCGILGYRPSHGTVSMIGVLPNSQSLDTVGLLA 221
QL + + +LG+ P + G +SQ L T +A
Sbjct: 238 CPLIGVIQLAHYVV-------------TAKLLGFTPGELRSYLKGATGHSQGLVTAVAIA 284
Query: 222 RNASILHRVGHVLLQLNAVEPRRARRLIFADDIFQLSKVPKLKTIHVISKAIESLSGYQN 281
S + F + KAI L
Sbjct: 285 ETDS-------------------------WESFFVSVR-----------KAITVLF---- 304
Query: 282 PEHMNVGQYIASNVPSLKGLRAQSTSP-------------ENGTATLKALSSVMLSLQRY 328
+I G+R P EN + + S MLS+
Sbjct: 305 --------FI--------GVRCYEAYPNTSLPPSILEDSLENN----EGVPSPMLSISNL 344
Query: 329 EFKTIYEEWVKSAKPRLGYNVFERVLEAINT---TQDNIKI-LYKVRNEMRAALQRLLKD 384
+ + + + N+ ++I L N +
Sbjct: 345 TQEQV-----------------QDYVNKTNSHLPAGKQVEISLV---NGAKN-------- 376
Query: 385 DKILVIPTVSDPPLKLNTKKTYSAEFHDRTLVLSSIGSMSGCCQVAIPIGKYNEHP-ISI 443
LV VS PP L Y L + SG Q IP + S
Sbjct: 377 ---LV---VSGPPQSL-----YGLNLT-----LRKAKAPSGLDQSRIPFSE--RKLKFSN 418
Query: 444 SF--IT--YHGGDKFLLDTVLDLY--DSLQEQVNI-ASNL-VPLPDTNGSIDASELLKEK 495
F + +H LL DL D ++ V+ A ++ +P+ DT D S+L
Sbjct: 419 RFLPVASPFHS---HLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTF---DGSDLRVLS 472
Query: 496 GNAAFKGKQ--------WNKAVNYYSEAIKLNGTSATY 525
G+ + + W AT+
Sbjct: 473 GSISERIVDCIIRLPVKWETTTQ----------FKATH 500
Score = 46.2 bits (109), Expect = 3e-05
Identities = 49/303 (16%), Positives = 90/303 (29%), Gaps = 124/303 (40%)
Query: 245 ARRLIF--ADDI------FQLSKV----PKLKTIHVISKAIESLSGYQNPEHMNVGQYIA 292
A+ ++ AD+ F + + P TIH G + G+ I
Sbjct: 1642 AQD-VWNRADNHFKDTYGFSILDIVINNPVNLTIH--------FGGEK-------GKRIR 1685
Query: 293 SNVPSLKGLRAQSTSPENGTATLKALSSVMLSLQRYEF--------KT------------ 332
N ++ T + T K + Y F T
Sbjct: 1686 ENYSAMIF----ETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEK 1741
Query: 333 -IYEEWVKSA--KPR--------LG-Y-------NVFERVLEAINTTQDNIKILYKVRNE 373
+E+ KS P LG Y +V +E +++++
Sbjct: 1742 AAFEDL-KSKGLIPADATFAGHSLGEYAALASLADVMS--IE------SLVEVVFY---- 1788
Query: 374 MRA-ALQRLLKDDK--------ILVIPTVSDPPLKLNTKKTYSAEFHDRTL--VLSSIGS 422
R +Q + D+ I + P +A F L V+ +G
Sbjct: 1789 -RGMTMQVAVPRDELGRSNYGMIAINPG------------RVAASFSQEALQYVVERVGK 1835
Query: 423 MSGC-CQVAIPIGKYNEHP--ISISFITYHGGDKFLLDTVLDLYDSLQEQVNIASNLVPL 479
+G ++ YN + GD LDTV ++ + ++ Q I +++ L
Sbjct: 1836 RTGWLVEIV----NYNVENQQYVAA------GDLRALDTVTNVLNFIKLQ-KI--DIIEL 1882
Query: 480 PDT 482
+
Sbjct: 1883 QKS 1885
Score = 43.9 bits (103), Expect = 2e-04
Identities = 32/174 (18%), Positives = 57/174 (32%), Gaps = 57/174 (32%)
Query: 181 GCVRVPASFCGILGYRPSH--G----TVSMIGVLPNSQSLDTV---GLLARNASILHRVG 231
G + A+F G H G S+ V+ ++ V G+ + A +G
Sbjct: 1751 GLIPADATFAG-------HSLGEYAALASLADVMSIESLVEVVFYRGMTMQVAVPRDELG 1803
Query: 232 HVLLQLNAVEPRRARRLIFADDIFQLSKVPKLKTIHVISKAIESLSGYQ----NPEHMNV 287
+ A+ P R F+ + + + + + +G+ N NV
Sbjct: 1804 RSNYGMIAINPGRV-AASFSQE-----------ALQYVVERVGKRTGWLVEIVN---YNV 1848
Query: 288 --GQYIAS----------NVPSLKGLRAQSTSPENGTATLKALSSVMLSLQRYE 329
QY+A+ NV L ++ Q + L LSL+ E
Sbjct: 1849 ENQQYVAAGDLRALDTVTNV--LNFIKLQKI-------DIIEL-QKSLSLEEVE 1892
Score = 38.1 bits (88), Expect = 0.009
Identities = 51/269 (18%), Positives = 84/269 (31%), Gaps = 104/269 (38%)
Query: 367 LYKVRNEMRAALQR---LLKDD---KILVIPTVSDPPLKL----------NTKKTYSAEF 410
LYK + R KD IL I V + P+ L ++ YSA
Sbjct: 1635 LYKTSKAAQDVWNRADNHFKDTYGFSILDI--VINNPVNLTIHFGGEKGKRIRENYSAMI 1692
Query: 411 HDRTLVLSSIGSMSGCCQVAIPIGKYNEHPISISFITYHGGDKFLLD----TVLDLYDSL 466
+ + G + + NEH S +F +K LL T
Sbjct: 1693 FETIV--------DGKLKTEKIFKEINEHSTSYTF----RSEKGLLSATQFT-------- 1732
Query: 467 QEQVNIASNLVPLPDTNGSIDASELLKEKG----NAAFKGKQWNKAVNYYS--EAIKLNG 520
Q + L+ A E LK KG +A F G +S E
Sbjct: 1733 --QPALT--LM-------EKAAFEDLKSKGLIPADATFAG---------HSLGE------ 1766
Query: 521 TSATYYSNRA----AAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEA 576
Y+ A A + + E + + V RG + +E
Sbjct: 1767 -----YA--ALASLADVMSI-------ES---LVEV----VFY---RGMTMQVAVPRDEL 1802
Query: 577 LQDFKHAMV-LEPQNKAANLAEKRLRKLI 604
+ + M+ + P AA+ +++ L+ ++
Sbjct: 1803 GRS-NYGMIAINPGRVAASFSQEALQYVV 1830
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A
{Thermus thermophilus}
Length = 217
Score = 67.9 bits (167), Expect = 4e-13
Identities = 18/109 (16%), Positives = 41/109 (37%), Gaps = 3/109 (2%)
Query: 490 ELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKT 549
L ++ + +A++ +A ++N A + R Y LG +AE +
Sbjct: 85 ALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQA 144
Query: 550 ISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAA--NLA 596
++L + + ++ +EAL + A+ P++ A
Sbjct: 145 LAL-EDTPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYA 192
Score = 67.9 bits (167), Expect = 4e-13
Identities = 21/124 (16%), Positives = 40/124 (32%), Gaps = 15/124 (12%)
Query: 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDK 554
G + +++ A+ + A+K N A L+LG A E+ ++
Sbjct: 11 LGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTP 70
Query: 555 KNVKAYLRRGTAREALFC-----------YNEALQDFKHAMVLEPQNKAA--NL--AEKR 599
+ + Y+ A AL+ +AL K A + P+
Sbjct: 71 RYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYAL 130
Query: 600 LRKL 603
L +
Sbjct: 131 LGER 134
Score = 61.4 bits (150), Expect = 6e-11
Identities = 17/87 (19%), Positives = 32/87 (36%), Gaps = 1/87 (1%)
Query: 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDK 554
+G + +KA +A+ L + S A YL +G +A +K +
Sbjct: 124 RGLVYALLGERDKAEASLKQALALE-DTPEIRSALAELYLSMGRLDEALAQYAKALEQAP 182
Query: 555 KNVKAYLRRGTAREALFCYNEALQDFK 581
K++ +R +A EA +
Sbjct: 183 KDLDLRVRYASALLLKGKAEEAARAAA 209
Score = 49.5 bits (119), Expect = 7e-07
Identities = 12/78 (15%), Positives = 26/78 (33%), Gaps = 2/78 (2%)
Query: 521 TSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEALQDF 580
T+ LG + A + + + ++ +A + L N AL++
Sbjct: 3 TAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENG 62
Query: 581 KHAMVLEPQNKAA--NLA 596
K + P+ L+
Sbjct: 63 KTLVARTPRYLGGYMVLS 80
Score = 43.3 bits (103), Expect = 8e-05
Identities = 8/59 (13%), Positives = 20/59 (33%)
Query: 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLD 553
+ ++A+ Y++A++ A+A L G ++A +
Sbjct: 157 LAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEHHHH 215
>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase
110 kDa subunit...; thiocarbamate crosslink, covalent
inhibitor, gylcosyltransfe inhibitor, O-GLCNAC
transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A*
3pe4_A*
Length = 723
Score = 71.4 bits (174), Expect = 4e-13
Identities = 24/103 (23%), Positives = 47/103 (45%), Gaps = 2/103 (1%)
Query: 496 GNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKK 555
+ + + +A+ +Y EAI+++ T A YSN E+ Q A + ++ I ++
Sbjct: 50 ASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPA 109
Query: 556 NVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAA--NLA 596
A+ + + EA+ ++ A+ L+P A NLA
Sbjct: 110 FADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLA 152
Score = 69.5 bits (169), Expect = 2e-12
Identities = 26/112 (23%), Positives = 44/112 (39%), Gaps = 4/112 (3%)
Query: 496 GNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKK 555
N + +AV Y +A+++ A +SN A+ + G Q+A + I +
Sbjct: 16 ANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT 75
Query: 556 NVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAA--NLAE--KRLRKL 603
AY G + + ALQ + A+ + P A NLA K +
Sbjct: 76 FADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNI 127
Score = 56.0 bits (134), Expect = 2e-08
Identities = 18/108 (16%), Positives = 39/108 (36%)
Query: 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDC 546
++ GN + + A+ Y+ AI++N A +SN A+ + + G +A
Sbjct: 75 TFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASY 134
Query: 547 SKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAAN 594
+ L AY + + + + + K + + N
Sbjct: 135 RTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQLEKN 182
Score = 47.5 bits (112), Expect = 1e-05
Identities = 14/69 (20%), Positives = 26/69 (37%)
Query: 522 SATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEALQDFK 581
A +N A E G ++A K + + + A+ + + EAL +K
Sbjct: 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYK 67
Query: 582 HAMVLEPQN 590
A+ + P
Sbjct: 68 EAIRISPTF 76
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex,
tetratricopeptide repeat, TPR, helical repeat, signaling
protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB:
2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Length = 368
Score = 70.1 bits (172), Expect = 4e-13
Identities = 14/111 (12%), Positives = 30/111 (27%), Gaps = 1/111 (0%)
Query: 483 NGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQA 542
N D + E+G + AV + A++ + + E A
Sbjct: 59 NPLRDHPQPF-EEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLA 117
Query: 543 EEDCSKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAA 593
+ + L N A + + +A + + + P
Sbjct: 118 ISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHL 168
Score = 69.7 bits (171), Expect = 6e-13
Identities = 14/99 (14%), Positives = 41/99 (41%)
Query: 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDK 554
G +++KAV+ ++ A+ + ++ A ++A + + L
Sbjct: 223 LGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQP 282
Query: 555 KNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAA 593
+++ G + L + EA++ F A+ ++ +++
Sbjct: 283 GYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGP 321
Score = 65.1 bits (159), Expect = 2e-11
Identities = 15/106 (14%), Positives = 38/106 (35%), Gaps = 4/106 (3%)
Query: 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTS--ATYYSNRAAAYLELGCFQQAEEDCSKTISL 552
+ + + + A++L+ TS + G + +A + + +S+
Sbjct: 187 ILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV 246
Query: 553 DKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAA--NLA 596
+ + + G EA+ ++ A+ L+P + NL
Sbjct: 247 RPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLG 292
Score = 61.6 bits (150), Expect = 2e-10
Identities = 16/107 (14%), Positives = 29/107 (27%), Gaps = 18/107 (16%)
Query: 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDK 554
G G Q +AV Y A++L N + + LG ++A E + +++ +
Sbjct: 257 LGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQR 316
Query: 555 KNVKAYLRRGTAR------------------EALFCYNEALQDFKHA 583
K+ G L
Sbjct: 317 KSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDLSTLLTM 363
Score = 61.2 bits (149), Expect = 3e-10
Identities = 14/114 (12%), Positives = 30/114 (26%), Gaps = 15/114 (13%)
Query: 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDK 554
G + +Q A++ ++L + T A ++ +QA E +
Sbjct: 104 LGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTP 163
Query: 555 KNVKAYLRRGTAREALFC---------------YNEALQDFKHAMVLEPQNKAA 593
+ E + F A+ L+P +
Sbjct: 164 AYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDP 217
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 69.5 bits (169), Expect = 2e-12
Identities = 88/567 (15%), Positives = 172/567 (30%), Gaps = 179/567 (31%)
Query: 172 DFALGTDTIGCVRVPASFCGILGYRPSHGTVSMIGVLPNSQS-----LDTVGLLARNASI 226
F D C V IL S + I + ++ S T LL++ +
Sbjct: 28 AFVDNFD---CKDVQDMPKSIL----SKEEIDHIIMSKDAVSGTLRLFWT--LLSKQEEM 78
Query: 227 LHRVGHVLLQLN--------AVEPRR----------ARRLIFAD-DIFQLSKVPKLKTIH 267
+ + +L++N E R+ R ++ D +F V +L+
Sbjct: 79 VQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYL 138
Query: 268 VISKAIESLSGYQNPEHMNVGQYIASNVPSLKGLRAQSTSPENGTATL--KALSSVMLSL 325
+ +A+ L + + + + G G + S +
Sbjct: 139 KLRQALLELR---------PAKNVL--IDGVLGS---------GKTWVALDVCLSYKV-Q 177
Query: 326 QRYEFKTIYEEWVKSAKPRLGYNVFERVLEAINTTQDNIKILYKVR-----------NEM 374
+ +FK I+ W+ N E VLE + I + R + +
Sbjct: 178 CKMDFK-IF--WLNLKN----CNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSI 230
Query: 375 RAALQRLLK-----------DD--------------KILVI---PTVSDPPLKLNTKKTY 406
+A L+RLLK + KIL+ V+D L T
Sbjct: 231 QAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTD-FLSAATTTHI 289
Query: 407 SAEFHDRTL-------VLSSIGSMSG------CCQVAIP-----IGK-YNEHPISISFIT 447
S + H TL +L P I + + +
Sbjct: 290 SLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTN-PRRLSIIAESIRDGLATWDNWK 348
Query: 448 YHGGDKF--LLDTVLD---------LYDSL---QEQVNIASNLVPL-----PDTNGSIDA 488
+ DK ++++ L+ ++D L +I + L+ L ++ +
Sbjct: 349 HVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVV 408
Query: 489 SELLK----EKGNAAF-----------KGKQWNKA------VNYYS--EAIKLNGTSATY 525
++L K EK K K N+ V++Y+ + + Y
Sbjct: 409 NKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPY 468
Query: 526 YSNRAAAYL--ELGCFQQAEE-DCSKTISLDKKNVKAYLRR-GTAREALFCYNEALQDFK 581
+++ L + E + + LD + ++ +R TA A LQ K
Sbjct: 469 LDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLK 528
Query: 582 ----HAMVLEPQNKAANLAEKRLRKLI 604
+ +P+ E+ + ++
Sbjct: 529 FYKPYICDNDPKY------ERLVNAIL 549
Score = 61.8 bits (149), Expect = 4e-10
Identities = 80/602 (13%), Positives = 161/602 (26%), Gaps = 168/602 (27%)
Query: 31 LAETLRRR-RNPKLNGRVDFGAFLERFELIPFPQPPPPAAR-QPLAGLKFAIKDVFDVKG 88
L ++ R P + + +R +R QP L+ A+ ++
Sbjct: 94 LMSPIKTEQRQPSMM-TRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLEL-RPAK 151
Query: 89 YVT-----GFGSPDWKRDHHEAERTAVVVTLLLKNGATCIGKTVLDEFAFGITGENKHYG 143
V G G K T V + C+ V + F I +
Sbjct: 152 NVLIDGVLGSG----K--------TWVAL-------DVCLSYKVQCKMDFKI-----FW- 186
Query: 144 TPVNPQMPSHIPGGSSSGSAVAVAAQLVDFALGTDTIGCVRVPASFCGILGYRPSHGTVS 203
+ + + S V L ++ ++ R H +
Sbjct: 187 ----------LNLKNCN-SPETVLEMLQKL--------LYQIDPNWTS----RSDHSS-- 221
Query: 204 MIGVLPNSQSLDTVGLLARNASILHRVGHVLLQLNAV-EPR-------RARRLIFADDIF 255
+ ++ R + LL L V + + L+
Sbjct: 222 -----NIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQ 276
Query: 256 QLSKVPKLKTIHVISKAIESLSGYQNPEHMNV-GQYIASNVPSLKGLRAQSTSPENGTAT 314
+ T H+ E ++ +Y+ L +T+P
Sbjct: 277 VTDFLSAATTTHISLD--HHSMTLTPDEVKSLLLKYLDCRPQDLP-REVLTTNP------ 327
Query: 315 LKALSSVMLSLQRYEFKTIYEEWVKSAKPRLGYNVFERVLEAINTT------------QD 362
+ LS + S++ + ++ W +L + E L +
Sbjct: 328 -RRLSIIAESIR--DGLATWDNWKHVNCDKLT-TIIESSLNVLEPAEYRKMFDRLSVFPP 383
Query: 363 NIKILYKV---------RNEMRAALQRLLK--------DDKILVIPTVSDPPLKLNTKKT 405
+ I + ++++ + +L K + + IP++ L+L K
Sbjct: 384 SAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIY---LELKVKLE 440
Query: 406 YSAEFHDRTLVLSSIGSMSGCCQ---VAIPIGKYNEHPISISFITYH-----GGDKFLL- 456
H ++ + + +Y S I +H ++ L
Sbjct: 441 NEYALHRS--IVDHYNIPKTFDSDDLIPPYLDQY-----FYSHIGHHLKNIEHPERMTLF 493
Query: 457 -DTVLDLYDSLQEQVNIASNLVPLPDTNGSIDASELLKEKGNAAFKGKQWNKAVNYYSEA 515
LD L++++ S N S L++ + +Y
Sbjct: 494 RMVFLDF-RFLEQKIRHDS-----TAWNASGSILNTLQQ--------------LKFYKPY 533
Query: 516 IKLNGTSATYYSNRAAAYLELGCF-QQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYN 574
I N Y A L+ F + EE+ + D LR E +
Sbjct: 534 ICDN---DPKYERLVNAILD---FLPKIEENLICSKYTD------LLRIALMAEDEAIFE 581
Query: 575 EA 576
EA
Sbjct: 582 EA 583
Score = 54.5 bits (130), Expect = 9e-08
Identities = 49/441 (11%), Positives = 116/441 (26%), Gaps = 132/441 (29%)
Query: 14 NPKVWVVI-GVSVVGFVVLA-ETLRRRRNPKLNGRVDFGAF------LERFELIPFPQPP 65
P V+I GV G +A + + K+ ++DF F E +
Sbjct: 148 RPAKNVLIDGVLGSGKTWVALDVCL---SYKVQCKMDFKIFWLNLKNCNSPETVL----- 199
Query: 66 PPAARQPLAGLKFAIKDVFDVKGYVTGFGSPDWKRDHHEAERTAVVVTLLLKNGATCI-- 123
+ L L + I + + + + + + L K C+
Sbjct: 200 -----EMLQKLLYQID-----PNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLV 249
Query: 124 -----GKTVLDEFAFG----ITGENKHYGTPVNPQMPSHIP-----GGSSSGSAVAVAAQ 169
+ F +T K ++ +HI + ++ +
Sbjct: 250 LLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLK 309
Query: 170 LVDFALGTDTIGCVRVPASFCGILGYRPSHGTVSMIGVL----PN-SQSLDTVGLLARNA 224
+D +P P +S+I + V N
Sbjct: 310 YLD-------CRPQDLPREVLTTN---PRR--LSIIAESIRDGLATWDNWKHV-----NC 352
Query: 225 SILHRVGHVLLQLNAVEPRRARRL-----IFADDIFQLSKVPKLKTIHVISKAIESL--- 276
L + + LN +EP R++ +F +P + + +
Sbjct: 353 DKLTTI--IESSLNVLEPAEYRKMFDRLSVFPPSA----HIP--------TILLSLIWFD 398
Query: 277 SGYQNPEHMNVGQYIASNVPSLKGLRAQS---TSPENGTATLKALSSVMLS--------- 324
+ + + L S P+ T ++ ++ +
Sbjct: 399 VIKSDVMVV------------VNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALH 446
Query: 325 ---LQRYEFKTIYEEWVKSAKPRLGYNVFERV---LEAINTTQ--DNIKILY-------- 368
+ Y ++ Y + + L+ I + ++++
Sbjct: 447 RSIVDHYNIPKTFDSDDLIPPYLDQY-FYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQ 505
Query: 369 KVRNE-----MRAALQRLLKD 384
K+R++ ++ L+
Sbjct: 506 KIRHDSTAWNASGSILNTLQQ 526
Score = 41.4 bits (96), Expect = 0.001
Identities = 42/295 (14%), Positives = 87/295 (29%), Gaps = 75/295 (25%)
Query: 323 LSLQRYEFKTIYEEWVKSAKPRLGYNVFERVLEAINTTQDNIKILYKVRNEMRAALQRLL 382
+Y++K I + + + + ++I + ++ I + ++ +
Sbjct: 11 TGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEE-IDHIIMSKDA----VSGT- 64
Query: 383 KDDKILVIPTVSDPPLKLNTKKTYSAEFHDRTL------VLSSIGSMSGCCQVAIPIGKY 436
++ L ++ +F + L ++S I + Q ++ Y
Sbjct: 65 --LRLFWT-------LLSKQEEMV-QKFVEEVLRINYKFLMSPIKTE--QRQPSMMTRMY 112
Query: 437 NEHPISISFITYHGGDKFLLDTV--LDLYDSLQE---QVNIASNLVPLPDTNGSIDASEL 491
E Y+ F V L Y L++ ++ A N++ ID
Sbjct: 113 IEQ----RDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVL--------ID---- 156
Query: 492 LKEKGNAAFKGKQW--NKAVNYYSEAIKLNG-----TSATYYSNRA------AAYLELGC 538
G GK W Y K++ S ++
Sbjct: 157 ----GVLGS-GKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDP 211
Query: 539 FQQAEEDCSKTISLDKKNVKAYLRRGTAREALFC---YNEAL---QDFKHAMVLE 587
+ D S I L +++A LRR L Y L + ++A
Sbjct: 212 NWTSRSDHSSNIKLRIHSIQAELRR------LLKSKPYENCLLVLLNVQNAKAWN 260
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural
genomics, joint CENT structural genomics, JCSG, protein
structure initiative; 2.54A {Chlorobium tepidum} SCOP:
a.118.8.8
Length = 159
Score = 63.4 bits (153), Expect = 4e-12
Identities = 21/139 (15%), Positives = 47/139 (33%), Gaps = 23/139 (16%)
Query: 489 SELLKEKGNAAFKGKQWNKAVNYYSEAIKLN------------GTSATYYSNRAAAYLEL 536
+ L ++++A A++++ G A ++ A A L
Sbjct: 11 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGL 70
Query: 537 GCFQQAEEDCSKTISLDKKN-----------VKAYLRRGTAREALFCYNEALQDFKHAMV 585
F +A K + + + A R A + L EA+ +FK +
Sbjct: 71 RSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130
Query: 586 LEPQNKAANLAEKRLRKLI 604
+ + K ++R+ ++
Sbjct: 131 MIEERKGETPGKERMMEVA 149
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha
helix, antivirus, antiviral protein; 2.80A {Homo
sapiens}
Length = 472
Score = 66.1 bits (161), Expect = 1e-11
Identities = 25/145 (17%), Positives = 50/145 (34%), Gaps = 11/145 (7%)
Query: 463 YDSLQEQVNIASNLVPLPDTNGSIDASELLKEKGNAAFK--GKQWNKAVNYYSEAIKLNG 520
+Q V+ ++ + I++ EL E+G K G Q +A + +A++
Sbjct: 110 LSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKP 169
Query: 521 TSATYYSNRAAAYLELGCF---QQAEEDCSKTISLDKKNVKAYLRRGTAREALFC----Y 573
+ + S A A L + Q A + + I L+ N + +
Sbjct: 170 KNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEE 229
Query: 574 NEALQDFKHAMVLEPQNKAA--NLA 596
E + + A+ P + A
Sbjct: 230 GEGEKLVEEALEKAPGVTDVLRSAA 254
Score = 64.2 bits (156), Expect = 6e-11
Identities = 19/106 (17%), Positives = 44/106 (41%), Gaps = 4/106 (3%)
Query: 503 KQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKA--- 559
+ AV + +A + N S A+ + +++AE K S + V
Sbjct: 314 ELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLL 373
Query: 560 YLRRGTARE-ALFCYNEALQDFKHAMVLEPQNKAANLAEKRLRKLI 604
+LR G + + C ++A+ F + + +++ + +L+K+
Sbjct: 374 HLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQKIA 419
Score = 60.0 bits (145), Expect = 1e-09
Identities = 15/116 (12%), Positives = 35/116 (30%), Gaps = 9/116 (7%)
Query: 490 ELLKEKGNAAFKGKQWNK---AVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQ----QA 542
E A+++ W A++ +AI+LN + A ++ +
Sbjct: 173 EFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEG 232
Query: 543 EEDCSKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAA--NLA 596
E+ + + ++A++ K A+ P N +
Sbjct: 233 EKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIG 288
Score = 57.3 bits (138), Expect = 7e-09
Identities = 17/118 (14%), Positives = 30/118 (25%), Gaps = 21/118 (17%)
Query: 501 KGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAY 560
+G++ + EA++ + A Y +A E K + N +
Sbjct: 225 EGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLH 284
Query: 561 LRRGTA-------------------REALFCYNEALQDFKHAMVLEPQNKAA--NLAE 597
+ G R+ L A+ K A LA
Sbjct: 285 CQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILAS 342
Score = 56.1 bits (135), Expect = 2e-08
Identities = 16/129 (12%), Positives = 33/129 (25%), Gaps = 19/129 (14%)
Query: 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLE----------- 535
+++L+ + + +KA+ +A++ +A + Y
Sbjct: 245 GVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLREN 304
Query: 536 --------LGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLE 587
L A K + + + Y EA F+ E
Sbjct: 305 GMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKE 364
Query: 588 PQNKAANLA 596
A L
Sbjct: 365 LTPVAKQLL 373
Score = 47.2 bits (112), Expect = 1e-05
Identities = 13/94 (13%), Positives = 35/94 (37%), Gaps = 10/94 (10%)
Query: 500 FKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKA 559
++ K +KA++++ E +K+N S + ++ +S + + +A
Sbjct: 383 YQMKCEDKAIHHFIEGVKINQKSREKEK----------MKDKLQKIAKMRLSKNGADSEA 432
Query: 560 YLRRGTAREALFCYNEALQDFKHAMVLEPQNKAA 593
+E +A +D + + +A
Sbjct: 433 LHVLAFLQELNEKMQQADEDSERGLESGSLIPSA 466
Score = 46.9 bits (111), Expect = 2e-05
Identities = 20/122 (16%), Positives = 32/122 (26%), Gaps = 21/122 (17%)
Query: 496 GNAAFKGKQWNKAVNYYSEAIKL---------NGTSATYYSNRAAAYLELGCFQQAEEDC 546
Q A+ +A +L S + N A Y +G +
Sbjct: 58 AYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYV 117
Query: 547 SKTISLDKKNVKA--------YLRRGTAREALFC--YNEALQDFKHAMVLEPQNKAA--N 594
K + +K G R A F+ A+ +P+N
Sbjct: 118 DKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSG 177
Query: 595 LA 596
LA
Sbjct: 178 LA 179
Score = 34.1 bits (78), Expect = 0.12
Identities = 9/108 (8%), Positives = 25/108 (23%), Gaps = 11/108 (10%)
Query: 497 NAAFKGKQWNKAVNYYSEAIKLNGTS--ATYYSNRAAAYLELGCFQQAEEDCSKTISL-- 552
N + + + AT + A G + A E K L
Sbjct: 23 NLMEGENSLDDFEDKVFYRTEFQNREFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQ 82
Query: 553 -------DKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAA 593
+ +++ + + ++ + + +
Sbjct: 83 QEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSP 130
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein
O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB:
2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Length = 568
Score = 64.9 bits (158), Expect = 4e-11
Identities = 16/95 (16%), Positives = 31/95 (32%), Gaps = 2/95 (2%)
Query: 504 QWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRR 563
+ + A++ + A A L +G E + ++L + +A R
Sbjct: 4 DGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARL 63
Query: 564 GTAREALFCYNEALQDFKHAMVLEPQNKAA--NLA 596
G R + EA + A P++ L
Sbjct: 64 GRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLG 98
Score = 64.1 bits (156), Expect = 6e-11
Identities = 14/117 (11%), Positives = 24/117 (20%), Gaps = 2/117 (1%)
Query: 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDC 546
+A + L+ + +A
Sbjct: 21 QDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLL 80
Query: 547 SKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAA--NLAEKRLR 601
+ ++ L G A E A + A L P+ L R R
Sbjct: 81 QQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRR 137
Score = 48.7 bits (116), Expect = 4e-06
Identities = 12/107 (11%), Positives = 25/107 (23%)
Query: 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDC 546
E + G + ++ +A +A A + G + A
Sbjct: 55 GHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAY 114
Query: 547 SKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAA 593
++ L + + R L + Q A
Sbjct: 115 TRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGA 161
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein;
secretin, TPR repeat, type IV pilus, bacterail
virulence; 1.54A {Neisseria meningitidis}
Length = 225
Score = 61.5 bits (150), Expect = 7e-11
Identities = 16/107 (14%), Positives = 36/107 (33%), Gaps = 4/107 (3%)
Query: 501 KGKQWNKAVNYYSEAIK--LNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVK 558
+ + +++ Y+ +A+ T N+ + G F AE ++++ +
Sbjct: 89 RLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPP 148
Query: 559 AYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAA--NLAEKRLRKL 603
A+ + +A FK +A L K + L
Sbjct: 149 AFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKAL 195
Score = 60.7 bits (148), Expect = 1e-10
Identities = 17/101 (16%), Positives = 40/101 (39%), Gaps = 8/101 (7%)
Query: 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDC 546
S + + +G+ + +A +A+K + + + RA Y L +A+E
Sbjct: 6 QVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESF 65
Query: 547 SKTISLDKKNVKAYLRRGTA--------REALFCYNEALQD 579
+ +S+ + + G E++ +++AL D
Sbjct: 66 RQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALAD 106
Score = 51.9 bits (125), Expect = 1e-07
Identities = 16/73 (21%), Positives = 32/73 (43%)
Query: 522 SATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEALQDFK 581
+ + A Y+ ++QA + D KN A+L R + L ++A + F+
Sbjct: 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFR 66
Query: 582 HAMVLEPQNKAAN 594
A+ ++P + N
Sbjct: 67 QALSIKPDSAEIN 79
Score = 51.9 bits (125), Expect = 1e-07
Identities = 15/94 (15%), Positives = 27/94 (28%), Gaps = 2/94 (2%)
Query: 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDK 554
KG + K Q+ A Y ++ + A + G A+ K S +
Sbjct: 119 KGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVE 178
Query: 555 KNVKAYLRRGTAREALFCYNEALQDFKHAMVLEP 588
L G A +++ L+
Sbjct: 179 VLQADDLLLGWKIAKA--LGNAQAAYEYEAQLQA 210
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response,
DNA repair, gene regulation; 2.05A {Mus musculus}
Length = 474
Score = 63.9 bits (155), Expect = 7e-11
Identities = 22/113 (19%), Positives = 43/113 (38%), Gaps = 3/113 (2%)
Query: 491 LLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATY---YSNRAAAYLELGCFQQAEEDCS 547
L N K +A++ Y++A K++ +++ + NRA + + +A E S
Sbjct: 223 YLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFS 282
Query: 548 KTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAANLAEKRL 600
+ +LD + R E L L+ + Q+ +L L
Sbjct: 283 QAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGKTKPKKLQSMLGSLRPAHL 335
Score = 61.6 bits (149), Expect = 4e-10
Identities = 19/118 (16%), Positives = 41/118 (34%), Gaps = 10/118 (8%)
Query: 487 DASELLKEKGNA-AFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEED 545
++ L KG A +A S+A+KL ++ Y + G A
Sbjct: 100 VEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTC 159
Query: 546 CSKTISLDKK--------NVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQN-KAAN 594
S ++ K V L+ + E ++++ K A+ ++ + ++
Sbjct: 160 FSGALTHCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWY 217
Score = 58.9 bits (142), Expect = 2e-09
Identities = 22/111 (19%), Positives = 39/111 (35%), Gaps = 11/111 (9%)
Query: 494 EKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYL--------ELGCFQQAEED 545
+ + + +V A++++ + AYL QQA
Sbjct: 184 QTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSA 243
Query: 546 CSKTISLDKK---NVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAA 593
++ +D+K N +L R T + Y EAL+ F A L+P
Sbjct: 244 YAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEP 294
Score = 47.7 bits (113), Expect = 7e-06
Identities = 19/129 (14%), Positives = 43/129 (33%), Gaps = 8/129 (6%)
Query: 473 ASNLVPLPDTNGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIK-LNGTSATYYSNRAA 531
+S LVP S+ + + A + ++ + + L +Y+ +
Sbjct: 11 SSGLVPRGSHMASMTGGQQMGRGSMMADEEEEAKHVLQKLQGLVDRLYCFRDSYFETHSV 70
Query: 532 AYLE------LGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYN-EALQDFKHAM 584
++ + + + + +A + +G A Y+ EA A+
Sbjct: 71 EDAGRKQQDVQEEMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAV 130
Query: 585 VLEPQNKAA 593
LEP+ A
Sbjct: 131 KLEPELVEA 139
Score = 39.2 bits (91), Expect = 0.003
Identities = 12/103 (11%), Positives = 26/103 (25%), Gaps = 3/103 (2%)
Query: 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDK 554
+ + + +A+ +S+A L+ L E K
Sbjct: 264 RATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGK---TKP 320
Query: 555 KNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAANLAE 597
K +++ L C + Q + + L
Sbjct: 321 KKLQSMLGSLRPAHLGPCGDGRYQSASGQKMTLELKPLSTLQP 363
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical,
transport protein; 1.60A {Trypanosoma brucei} SCOP:
a.118.8.1
Length = 121
Score = 58.2 bits (141), Expect = 1e-10
Identities = 14/96 (14%), Positives = 30/96 (31%)
Query: 494 EKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLD 553
E+G + K +A + + + + E A + LD
Sbjct: 22 EEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD 81
Query: 554 KKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQ 589
K++ + + N AL + ++ +PQ
Sbjct: 82 PKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQ 117
Score = 47.1 bits (112), Expect = 1e-06
Identities = 13/71 (18%), Positives = 26/71 (36%), Gaps = 2/71 (2%)
Query: 528 NRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLE 587
+ L+L +A + + +A+ G + A+ HA +L+
Sbjct: 22 EEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD 81
Query: 588 PQNKAA--NLA 596
P++ A LA
Sbjct: 82 PKDIAVHAALA 92
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis,
TPR, superhelix, protein binding; HET: MSE; 2.00A
{Pseudomonas aeruginosa} PDB: 2fi7_A
Length = 252
Score = 60.0 bits (146), Expect = 3e-10
Identities = 14/102 (13%), Positives = 35/102 (34%), Gaps = 2/102 (1%)
Query: 497 NAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKN 556
++ + + + K + Y YL+ G +QA+ K + +D +
Sbjct: 11 SSGLVPRGSHMGDQNPLKTDKGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSS 70
Query: 557 VKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAA--NLA 596
A+ + A ++++ A+ + +N N
Sbjct: 71 ADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYG 112
Score = 60.0 bits (146), Expect = 3e-10
Identities = 18/97 (18%), Positives = 39/97 (40%)
Query: 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDC 546
+A + + G + +A +A++++ +SA ++ A + + A+E+
Sbjct: 35 EARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEY 94
Query: 547 SKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHA 583
K ++ D +N + G Y EA Q A
Sbjct: 95 RKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEA 131
Score = 59.2 bits (144), Expect = 5e-10
Identities = 19/100 (19%), Positives = 36/100 (36%), Gaps = 2/100 (2%)
Query: 496 GNAAFKGKQWNKAVNYYSEAIK--LNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLD 553
G ++ K++ +A EA + L + + N L++ QA+E K++ L+
Sbjct: 112 GGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN 171
Query: 554 KKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAA 593
+ L Y A Q + QN +
Sbjct: 172 RNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARS 211
Score = 59.2 bits (144), Expect = 6e-10
Identities = 13/106 (12%), Positives = 37/106 (34%), Gaps = 4/106 (3%)
Query: 496 GNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTI--SLD 553
+ A Y +A+ + +A +N E +++A + + +L
Sbjct: 78 AVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLY 137
Query: 554 KKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAA--NLAE 597
+ + + G + +A + F+ ++ L + +A+
Sbjct: 138 PERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMAD 183
Score = 58.8 bits (143), Expect = 8e-10
Identities = 13/98 (13%), Positives = 32/98 (32%)
Query: 496 GNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKK 555
G + + K+ +A Y+ ++++LN + A + + A + +
Sbjct: 148 GLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQ 207
Query: 556 NVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAA 593
N ++ L + + A L P +
Sbjct: 208 NARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEY 245
Score = 36.9 bits (86), Expect = 0.013
Identities = 9/75 (12%), Positives = 20/75 (26%), Gaps = 2/75 (2%)
Query: 490 ELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKT 549
+ E + +K +++ A YY + G +A A +
Sbjct: 176 SVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQL 235
Query: 550 ISL--DKKNVKAYLR 562
L + +
Sbjct: 236 KRLYPGSLEYQEFQA 250
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A
{Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Length = 91
Score = 54.7 bits (133), Expect = 1e-09
Identities = 23/76 (30%), Positives = 41/76 (53%)
Query: 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDK 554
GNA +K +++A+ YY +A++L+ +A + N AY + G + +A E K + LD
Sbjct: 15 LGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 74
Query: 555 KNVKAYLRRGTAREAL 570
N +A G A++
Sbjct: 75 NNAEAKQNLGNAKQKQ 90
Score = 48.2 bits (116), Expect = 2e-07
Identities = 23/72 (31%), Positives = 37/72 (51%), Gaps = 2/72 (2%)
Query: 526 YSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMV 585
+ N AY + G + +A E K + LD N +A+ G A Y+EA++ ++ A+
Sbjct: 12 WYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 71
Query: 586 LEPQNKAA--NL 595
L+P N A NL
Sbjct: 72 LDPNNAEAKQNL 83
Score = 35.1 bits (82), Expect = 0.007
Identities = 13/43 (30%), Positives = 24/43 (55%)
Query: 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELG 537
GNA +K +++A+ YY +A++L+ +A N A + G
Sbjct: 49 LGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 91
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha
subunit; ftase, farnesyltransferase, farnesyl
transferase, prenyltransferase, CAAX, RAS, lipid
modification, prenylation; HET: SUC FAR; 1.50A {Homo
sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A*
1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A*
2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A*
3ksq_A* 1o1t_A* 1o1s_A* ...
Length = 382
Score = 57.4 bits (138), Expect = 6e-09
Identities = 16/89 (17%), Positives = 34/89 (38%)
Query: 502 GKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYL 561
K ++ +NY + I+ + + +R L Q E + ++ D KN A+
Sbjct: 145 QKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQ 204
Query: 562 RRGTAREALFCYNEALQDFKHAMVLEPQN 590
R + ++ LQ + + +N
Sbjct: 205 HRQWVIQEFKLWDNELQYVDQLLKEDVRN 233
Score = 52.0 bits (124), Expect = 3e-07
Identities = 20/127 (15%), Positives = 45/127 (35%), Gaps = 10/127 (7%)
Query: 474 SNLVPLPDTNG-----SI----DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSAT 524
+++ P+P +G I ++ + ++ +A +AI+LN + T
Sbjct: 73 ADIDPVPQNDGPNPVVQIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYT 132
Query: 525 YYSNRAAAYLELG-CFQQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHA 583
+ R L + + I KN + + R E L ++ L+
Sbjct: 133 VWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADI 192
Query: 584 MVLEPQN 590
+ + +N
Sbjct: 193 LNQDAKN 199
Score = 41.6 bits (97), Expect = 6e-04
Identities = 11/105 (10%), Positives = 33/105 (31%), Gaps = 7/105 (6%)
Query: 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAE------EDCSK 548
+ + K W+ + Y + +K + + + ++ R + + +
Sbjct: 206 RQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLE 265
Query: 549 TISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAA 593
I L N A+ + ++ + L+P + +
Sbjct: 266 MIKLVPHNESAWNYLKGILQDRG-LSKYPNLLNQLLDLQPSHSSP 309
Score = 34.7 bits (79), Expect = 0.089
Identities = 12/80 (15%), Positives = 25/80 (31%), Gaps = 1/80 (1%)
Query: 515 AIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREAL-FCY 573
I + Y A ++A + I L+ N + R ++L
Sbjct: 89 QIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDL 148
Query: 574 NEALQDFKHAMVLEPQNKAA 593
+E + + +P+N
Sbjct: 149 HEEMNYITAIIEEQPKNYQV 168
>3k9i_A BH0479 protein; putative protein binding protein, structural
genomics, joint for structural genomics, JCSG; 2.71A
{Bacillus halodurans}
Length = 117
Score = 53.2 bits (128), Expect = 7e-09
Identities = 13/89 (14%), Positives = 30/89 (33%), Gaps = 3/89 (3%)
Query: 507 KAVNYYSEAIKLNGTSATY---YSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRR 563
+AV YY +AI Y + + LG +++AE + + + +
Sbjct: 8 QAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFY 67
Query: 564 GTAREALFCYNEALQDFKHAMVLEPQNKA 592
L Y + ++ + ++
Sbjct: 68 AMVLYNLGRYEQGVELLLKIIAETSDDET 96
Score = 41.2 bits (97), Expect = 9e-05
Identities = 16/84 (19%), Positives = 32/84 (38%), Gaps = 8/84 (9%)
Query: 496 GNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISL--D 553
G+ ++ KA + +K A LG ++Q E K I+ D
Sbjct: 34 GSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVELLLKIIAETSD 93
Query: 554 KKNVKAYLRRGTAREALFCYNEAL 577
+ +++Y ++A+ Y + L
Sbjct: 94 DETIQSY------KQAILFYADKL 111
Score = 34.7 bits (80), Expect = 0.016
Identities = 16/66 (24%), Positives = 24/66 (36%), Gaps = 5/66 (7%)
Query: 536 LGCFQQAEEDCSKTISL---DKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKA 592
LG QA K I+ K + YL G+ L Y +A + + P ++A
Sbjct: 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQA 62
Query: 593 A--NLA 596
A
Sbjct: 63 LRVFYA 68
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural
genomics, PSI-2, protein structure initiative; NMR
{Bacteroides fragilis}
Length = 99
Score = 52.4 bits (126), Expect = 8e-09
Identities = 15/85 (17%), Positives = 29/85 (34%), Gaps = 2/85 (2%)
Query: 494 EKGNAAFKGKQWNKAVNYYSEAIKLNGTS-ATYYSNRAAAYLELGCFQQAEEDCSKTISL 552
+ A+ E ++ Y AY +LG +Q+A + I L
Sbjct: 5 KTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64
Query: 553 DKKNVKAYLRRGTAREALFCYNEAL 577
+ + R+ + L YN+ +
Sbjct: 65 NPDSPALQARKMVM-DILNFYNKDM 88
Score = 47.0 bits (112), Expect = 7e-07
Identities = 15/79 (18%), Positives = 32/79 (40%), Gaps = 2/79 (2%)
Query: 528 NRAAAYLELGCFQQAEEDCSKTISLDKKNV-KAYLRRGTAREALFCYNEALQDFKHAMVL 586
+ G + A + + + + +AY G A L + +AL +++ A+ L
Sbjct: 5 KTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64
Query: 587 EPQNKAANLAEKRLRKLIG 605
P + A A K + ++
Sbjct: 65 NPDSPALQ-ARKMVMDILN 82
Score = 35.0 bits (81), Expect = 0.009
Identities = 15/43 (34%), Positives = 19/43 (44%)
Query: 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNR 529
E GNA K W KA+N Y AI+LN S + +
Sbjct: 33 GKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQARK 75
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C
biogenesis, O157:H7 EDL933, formate- nitrite reductase
complex, lyase; 2.05A {Escherichia coli}
Length = 177
Score = 54.5 bits (131), Expect = 8e-09
Identities = 20/117 (17%), Positives = 44/117 (37%), Gaps = 10/117 (8%)
Query: 496 GNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELG---CFQQAEEDCSKTISL 552
G ++ ++ Y +A++L G +A Y+ A Q K ++L
Sbjct: 51 GEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDKALAL 110
Query: 553 DKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQN-------KAANLAEKRLRK 602
D + A + + Y +A++ ++ M L ++ N+A+ R+
Sbjct: 111 DSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRTQLVESINMAKLLQRR 167
Score = 36.8 bits (85), Expect = 0.008
Identities = 12/86 (13%), Positives = 25/86 (29%), Gaps = 3/86 (3%)
Query: 487 DASELLKEKGNAAF---KGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAE 543
+ +EL + + +A+ L+ T A+ + QA
Sbjct: 76 ENAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAI 135
Query: 544 EDCSKTISLDKKNVKAYLRRGTAREA 569
E K + L+ + + A
Sbjct: 136 ELWQKVMDLNSPRINRTQLVESINMA 161
Score = 36.4 bits (84), Expect = 0.011
Identities = 10/72 (13%), Positives = 24/72 (33%), Gaps = 2/72 (2%)
Query: 528 NRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLE 587
+ + + + I + +N + + G Y+ +L ++ A+ L
Sbjct: 15 DPLHQFASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR 74
Query: 588 PQNKAA--NLAE 597
+N LA
Sbjct: 75 GENAELYAALAT 86
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics,
PSI-2, protein structure initiative; 2.80A {Salinibacter
ruber} PDB: 2kcl_A 2kcv_A
Length = 100
Score = 51.5 bits (124), Expect = 2e-08
Identities = 13/86 (15%), Positives = 27/86 (31%), Gaps = 3/86 (3%)
Query: 523 ATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKH 582
A +L+ +A + + D V Y G E L ++A+ +
Sbjct: 7 PFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQ 66
Query: 583 AMVLEPQN---KAANLAEKRLRKLIG 605
+ + + K + + K G
Sbjct: 67 GIEVAREEGTQKDLSELQDAKLKAEG 92
Score = 51.5 bits (124), Expect = 2e-08
Identities = 10/88 (11%), Positives = 27/88 (30%), Gaps = 5/88 (5%)
Query: 496 GNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKK 555
K ++A+ + E ++ + Y + Y L A + ++ I + ++
Sbjct: 14 AQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVARE 73
Query: 556 NVKAYLRRGTAREALFCYNEALQDFKHA 583
E + + +H
Sbjct: 74 EGTQK----DLSELQDAKLK-AEGLEHH 96
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain,
DNA-binding, transcription regulation, transmembrane;
1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Length = 372
Score = 54.7 bits (131), Expect = 3e-08
Identities = 18/101 (17%), Positives = 30/101 (29%), Gaps = 3/101 (2%)
Query: 499 AFKGKQWNKAVNYYSEAIKLNGT--SATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKN 556
KQ + L + Y +A + L G ++ + + I L+ +
Sbjct: 251 PLDEKQLAALNTEIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEM-S 309
Query: 557 VKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAANLAE 597
Y+ G E EA + A L P E
Sbjct: 310 WLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGANTLYWIE 350
Score = 40.9 bits (95), Expect = 0.001
Identities = 15/101 (14%), Positives = 32/101 (31%), Gaps = 7/101 (6%)
Query: 464 DSLQEQVNIASNLVPLPDTNGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSA 523
+L +++ L L + S + + K +A + +++ + I L S
Sbjct: 258 AALNTEIDNIVTLPELNNL------SIIYQIKAVSALVKGKTDESYQAINTGIDLE-MSW 310
Query: 524 TYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRG 564
Y Y G ++A + +L Y
Sbjct: 311 LNYVLLGKVYEMKGMNREAADAYLTAFNLRPGANTLYWIEN 351
Score = 28.5 bits (63), Expect = 6.8
Identities = 7/38 (18%), Positives = 11/38 (28%)
Query: 496 GNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAY 533
G +A + Y A L + T Y +
Sbjct: 317 GKVYEMKGMNREAADAYLTAFNLRPGANTLYWIENGIF 354
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like
repeat, protein transport; 2.90A {Saccharomyces
cerevisiae} SCOP: a.118.8.1
Length = 292
Score = 52.3 bits (125), Expect = 2e-07
Identities = 18/136 (13%), Positives = 38/136 (27%), Gaps = 24/136 (17%)
Query: 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTS------ATYYSNRAAAYLELGCFQ 540
+A++L + K+ N A + + +A + Y + G
Sbjct: 35 EAADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSV 94
Query: 541 QAEEDCSKTISLDKKNVK--------------AYLRRGTAREALFCYNEALQDFK----H 582
A + I + + +A+ CY A + +
Sbjct: 95 NAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSV 154
Query: 583 AMVLEPQNKAANLAEK 598
A+ + K A+L
Sbjct: 155 ALSNKCFIKCADLKAL 170
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein
structure initiative, PSI, center for eukaryotic
structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Length = 307
Score = 51.0 bits (122), Expect = 4e-07
Identities = 19/134 (14%), Positives = 40/134 (29%), Gaps = 22/134 (16%)
Query: 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLN------GTSATYYSNRAAAYLELGCFQ 540
A+ + A KQ +A + Y + + + +A + +L
Sbjct: 34 SAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMP 93
Query: 541 QAEEDCSKTISLDKKNVK------------AYLRRGTAREALFCYNEALQDF----KHAM 584
+A + K + +N + +A+ Y +A F +
Sbjct: 94 EAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEPLDLSKAVHLYQQAAAVFENEERLRQ 153
Query: 585 VLEPQNKAANLAEK 598
E KA+ L +
Sbjct: 154 AAELIGKASRLLVR 167
Score = 45.3 bits (107), Expect = 3e-05
Identities = 20/116 (17%), Positives = 37/116 (31%), Gaps = 19/116 (16%)
Query: 483 NGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKL------NGTSATYYSNRAAAYLEL 536
NG+ D + + ++ + +KAV+ Y +A + +A + +
Sbjct: 109 NGTPDTAAMALDRAGKLMEPLDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQ 168
Query: 537 GCFQQAEEDCSKTISLDKKN-------------VKAYLRRGTAREALFCYNEALQD 579
F +A K S+ K+ V L R A C E+
Sbjct: 169 QKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESYSI 224
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR,
cell polarity, asymmetric CEL division, mitotic spindle
orientation; 2.60A {Homo sapiens}
Length = 406
Score = 48.1 bits (115), Expect = 5e-06
Identities = 19/104 (18%), Positives = 33/104 (31%), Gaps = 17/104 (16%)
Query: 492 LKEKGNAAFKGKQWNKAVNYYSEAIKLNGTS----ATYYSNRAAAYLELGCFQQAEEDCS 547
L +G K V+++ A+++ + YS AY L + +A E
Sbjct: 12 LALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHH 71
Query: 548 KTISL-----DKKNV--------KAYLRRGTAREALFCYNEALQ 578
++L D+ G EA+ C L
Sbjct: 72 HDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLD 115
Score = 41.9 bits (99), Expect = 4e-04
Identities = 21/102 (20%), Positives = 35/102 (34%), Gaps = 19/102 (18%)
Query: 496 GNAAFKGKQWNKAVNYYSEAIKL------NGTSATYYSNRAAAYLELGCFQQAEEDCSKT 549
GN + + AV + + + + YSN AY+ LG F+ A E KT
Sbjct: 194 GNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKT 253
Query: 550 ISL-----DKKNV--------KAYLRRGTAREALFCYNEALQ 578
+ L D+ Y +A+ + + L
Sbjct: 254 LLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLA 295
Score = 38.4 bits (90), Expect = 0.006
Identities = 26/146 (17%), Positives = 42/146 (28%), Gaps = 31/146 (21%)
Query: 460 LDLYDSLQEQVNIASNLVPLPDTNGSI--------DASELLKEKGNAAFKGKQWNKAVNY 511
LD+ L ++V A L L G++ AV++
Sbjct: 114 LDISRELNDKVGEARALYNL----GNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDF 169
Query: 512 YSEAIKLNGTS------ATYYSNRAAAYLELGCFQQAEEDCSKTISL-----DKKNV--- 557
Y E + L + N + LG F+ A + + + DK
Sbjct: 170 YEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRA 229
Query: 558 -----KAYLRRGTAREALFCYNEALQ 578
AY+ G A Y + L
Sbjct: 230 YSNLGNAYIFLGEFETASEYYKKTLL 255
Score = 37.3 bits (87), Expect = 0.014
Identities = 18/131 (13%), Positives = 41/131 (31%), Gaps = 28/131 (21%)
Query: 496 GNAAFKGKQWNKAVNYYSEAIKLNGTS------ATYYSNRAAAYLELGCFQQAEEDCSKT 549
GN + + KA++Y+ + + + + AY LG QA K
Sbjct: 274 GNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKH 333
Query: 550 ISLDKK------------NV--------KAYLRRGTAREALFCYNEALQDFKHAMVLEPQ 589
+ + ++ N+ +Y + + +L + L +
Sbjct: 334 LEISREVGDKSGELTARLNLSDLQMVLGLSYSTNNSIMSENTEIDSSLNGVR--PKLGRR 391
Query: 590 NKAANLAEKRL 600
+ N+ +L
Sbjct: 392 HSMENMELMKL 402
Score = 36.1 bits (84), Expect = 0.028
Identities = 19/78 (24%), Positives = 30/78 (38%), Gaps = 9/78 (11%)
Query: 496 GNAAFKGKQWNKAVNYYSEAIKLNGTS------ATYYSNRAAAYLELGCFQQAEEDCSKT 549
GNA F + KA+ Y+ + L T A N LG F +A C +
Sbjct: 54 GNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRH 113
Query: 550 ISLDKKNVKAYLRRGTAR 567
+ + + + + G AR
Sbjct: 114 LDISR---ELNDKVGEAR 128
Score = 35.7 bits (83), Expect = 0.038
Identities = 13/90 (14%), Positives = 23/90 (25%), Gaps = 15/90 (16%)
Query: 496 GNAAFKGKQWNKAVNYYSEAIKLN-------GTSATYYSNRAAAYLELGCFQQAEEDCSK 548
GN +++A+ + ++ G + Y N Y G
Sbjct: 94 GNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALY-NLGNVYHAKG-------KSFG 145
Query: 549 TISLDKKNVKAYLRRGTAREALFCYNEALQ 578
R + A+ Y E L
Sbjct: 146 CPGPQDVGEFPEEVRDALQAAVDFYEENLS 175
Score = 33.8 bits (78), Expect = 0.16
Identities = 8/68 (11%), Positives = 19/68 (27%), Gaps = 11/68 (16%)
Query: 522 SATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVK-----------AYLRRGTAREAL 570
S + + G + + + +++K AY +AL
Sbjct: 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKAL 67
Query: 571 FCYNEALQ 578
++ L
Sbjct: 68 EYHHHDLT 75
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR),
beta-hairpin, alpha-solenoi transport protein; 2.60A
{Bos taurus}
Length = 291
Score = 46.7 bits (110), Expect = 1e-05
Identities = 12/106 (11%), Positives = 25/106 (23%), Gaps = 4/106 (3%)
Query: 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGC--FQQAEEDCSKTISL 552
K + + A + + + A L G Q A +
Sbjct: 136 TVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK 195
Query: 553 DKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAA--NLA 596
+ + A + A + A+ + + NL
Sbjct: 196 CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLV 241
Score = 40.1 bits (93), Expect = 0.001
Identities = 17/132 (12%), Positives = 34/132 (25%), Gaps = 7/132 (5%)
Query: 461 DLYDSLQEQVNIASNLVPLPDTNGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNG 520
+ S + I + L + + + L + F + + A+ G
Sbjct: 73 EYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLH-----QG 127
Query: 521 TSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREALFC--YNEALQ 578
S + L+L A ++ K D+ L A +A
Sbjct: 128 DSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYY 187
Query: 579 DFKHAMVLEPQN 590
F+
Sbjct: 188 IFQEMADKCSPT 199
Score = 37.4 bits (86), Expect = 0.011
Identities = 15/123 (12%), Positives = 35/123 (28%), Gaps = 7/123 (5%)
Query: 485 SIDASELLKEKGNAAFKGKQWNKAVNYYSE--AIKLNGTSATYYSNRAAAYLELGCFQQA 542
S + ++ + + V + ++ T+ T+ A+ Y A
Sbjct: 61 SAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAA 120
Query: 543 EEDCSKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAANLAEKRLRK 602
+ SL+ + + R + A ++ K + LA +
Sbjct: 121 LRTLHQGDSLECMAMTVQILLKLDR-----LDLARKELKKMQDQDEDATLTQLATAWVSL 175
Query: 603 LIG 605
G
Sbjct: 176 AAG 178
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein
structure initiative, no structural genomics consortium,
NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Length = 203
Score = 45.7 bits (109), Expect = 1e-05
Identities = 15/106 (14%), Positives = 28/106 (26%), Gaps = 20/106 (18%)
Query: 496 GNAAFKGKQWNKAVNYYSEAIKL-------NGTSATYYSNRAAAYLELGCFQQAEEDCSK 548
G W+ A + E +L ++ A L G A ++ K
Sbjct: 73 GMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEK 132
Query: 549 TISL-----DKKNV--------KAYLRRGTAREALFCYNEALQDFK 581
++ D+ + + EA + A F
Sbjct: 133 SLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFA 178
Score = 37.6 bits (88), Expect = 0.006
Identities = 11/103 (10%), Positives = 23/103 (22%), Gaps = 20/103 (19%)
Query: 496 GNAAFKGKQWNKAVNYYSEAIKLNGTS------ATYYSNRAAAYLELGCFQQAEEDCSKT 549
G ++++A + + S G + A +
Sbjct: 33 GYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEE 92
Query: 550 ISL-----DKKNVKA---------YLRRGTAREALFCYNEALQ 578
L + + L G A Y ++L
Sbjct: 93 RELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLV 135
Score = 32.6 bits (75), Expect = 0.19
Identities = 13/94 (13%), Positives = 22/94 (23%), Gaps = 13/94 (13%)
Query: 498 AAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISL----- 552
AAF+ + A + T++ Y + F +A
Sbjct: 1 AAFEAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSG 60
Query: 553 DKKNV--------KAYLRRGTAREALFCYNEALQ 578
D G A C+ E +
Sbjct: 61 DHTAEHRALHQVGMVERMAGNWDAARRCFLEERE 94
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat,
protein-protein interaction, protein-binding, PR
binding; 2.30A {Mus musculus}
Length = 338
Score = 46.5 bits (111), Expect = 1e-05
Identities = 23/112 (20%), Positives = 36/112 (32%), Gaps = 18/112 (16%)
Query: 484 GSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTS----ATYYSNRAAAYLELGCF 539
GS EL E G K V+++ A+++ + YS AY L +
Sbjct: 1 GSASCLELALE-GERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDY 59
Query: 540 QQAEEDCSKTISL-----DKKNV--------KAYLRRGTAREALFCYNEALQ 578
+A E ++L D+ G EA+ C L
Sbjct: 60 AKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLD 111
Score = 41.8 bits (99), Expect = 4e-04
Identities = 21/102 (20%), Positives = 35/102 (34%), Gaps = 19/102 (18%)
Query: 496 GNAAFKGKQWNKAVNYYSEAIKL------NGTSATYYSNRAAAYLELGCFQQAEEDCSKT 549
GN + + AV + + + + YSN AY+ LG F+ A E KT
Sbjct: 190 GNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKT 249
Query: 550 ISL-----DKKNV--------KAYLRRGTAREALFCYNEALQ 578
+ L D+ Y +A+ + + L
Sbjct: 250 LLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLA 291
Score = 39.2 bits (92), Expect = 0.003
Identities = 18/102 (17%), Positives = 35/102 (34%), Gaps = 19/102 (18%)
Query: 496 GNAAFKGKQWNKAVNYYSEAIKLNGTS------ATYYSNRAAAYLELGCFQQAEEDCSKT 549
GNA ++ A YY + + L A + Y L +++A + K
Sbjct: 230 GNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKH 289
Query: 550 ISL-----DKKNV--------KAYLRRGTAREALFCYNEALQ 578
+++ D+ AY G +A+ + L+
Sbjct: 290 LAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 331
Score = 38.4 bits (90), Expect = 0.005
Identities = 26/146 (17%), Positives = 41/146 (28%), Gaps = 31/146 (21%)
Query: 460 LDLYDSLQEQVNIASNLVPLPDTNGSI--------DASELLKEKGNAAFKGKQWNKAVNY 511
LD+ L ++V A L L G++ AV+
Sbjct: 110 LDISRELNDKVGEARALYNL----GNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDL 165
Query: 512 YSEAIKLNGTS------ATYYSNRAAAYLELGCFQQAEEDCSKTISL-----DKKNV--- 557
Y E + L + N + LG F+ A + + + DK
Sbjct: 166 YEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRA 225
Query: 558 -----KAYLRRGTAREALFCYNEALQ 578
AY+ G A Y + L
Sbjct: 226 YSNLGNAYIFLGEFETASEYYKKTLL 251
Score = 36.1 bits (84), Expect = 0.028
Identities = 13/90 (14%), Positives = 23/90 (25%), Gaps = 15/90 (16%)
Query: 496 GNAAFKGKQWNKAVNYYSEAIKLN-------GTSATYYSNRAAAYLELGCFQQAEEDCSK 548
GN +++A+ + ++ G + Y N Y G
Sbjct: 90 GNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALY-NLGNVYHAKG-------KSFG 141
Query: 549 TISLDKKNVKAYLRRGTAREALFCYNEALQ 578
R + A+ Y E L
Sbjct: 142 CPGPQDTGEFPEDVRNALQAAVDLYEENLS 171
Score = 34.5 bits (80), Expect = 0.084
Identities = 19/78 (24%), Positives = 30/78 (38%), Gaps = 9/78 (11%)
Query: 496 GNAAFKGKQWNKAVNYYSEAIKLNGTS------ATYYSNRAAAYLELGCFQQAEEDCSKT 549
GNA F + KA+ Y+ + L T A N LG F +A C +
Sbjct: 50 GNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRH 109
Query: 550 ISLDKKNVKAYLRRGTAR 567
+ + + + + G AR
Sbjct: 110 LDISR---ELNDKVGEAR 124
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide
repeat, response regulator helix-turn-HELX binding,
3-helix bundle; 2.30A {Bacillus subtilis}
Length = 383
Score = 46.4 bits (110), Expect = 2e-05
Identities = 19/124 (15%), Positives = 44/124 (35%), Gaps = 20/124 (16%)
Query: 479 LPDTNGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKL-------NGTSATYYSNRAA 531
L I+ +E + + + KQ +++Y +A ++ N +S A
Sbjct: 133 LIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFAT 192
Query: 532 AYLELGCFQQAEEDCSKTISLDKK------------NV-KAYLRRGTAREALFCYNEALQ 578
+L+L ++ A K S+ + N+ + +A+ + A+
Sbjct: 193 NFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIA 252
Query: 579 DFKH 582
F+
Sbjct: 253 VFEE 256
Score = 44.4 bits (105), Expect = 8e-05
Identities = 9/107 (8%), Positives = 32/107 (29%), Gaps = 20/107 (18%)
Query: 495 KGNAAFKGKQWNKAVNYYSEAIKL------NGTSATYYSNRAAAYLELGCFQQAEE---- 544
+G +++ A+ ++ +A A ++ + +Y + + +
Sbjct: 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQ 168
Query: 545 --DCSKTISLDKKNV--------KAYLRRGTAREALFCYNEALQDFK 581
+ K + +L +A+ + +A +
Sbjct: 169 AYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAE 215
Score = 41.0 bits (96), Expect = 9e-04
Identities = 9/102 (8%), Positives = 32/102 (31%), Gaps = 19/102 (18%)
Query: 496 GNAAFKGKQWNKAVNYYSEAIKLNGTS------ATYYSNRAAAYLELGCFQQAEEDCSKT 549
KQ+ A++++ +A + N ++ A +
Sbjct: 191 ATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRA 250
Query: 550 ISLDKKN-------------VKAYLRRGTAREALFCYNEALQ 578
I++ +++ + + + G +A +++ +
Sbjct: 251 IAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMA 292
Score = 39.4 bits (92), Expect = 0.003
Identities = 22/110 (20%), Positives = 40/110 (36%), Gaps = 8/110 (7%)
Query: 496 GNAAFKGKQWNKAVNYYSEAIKLNGTS------ATYYSNRAAAYLELGCFQQAEEDCSKT 549
G Q+ A+ Y+ AI + S Y + +LG +A E SK
Sbjct: 231 GLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKG 290
Query: 550 ISLDKK-NVKAYLRRGTAREALFCYNEALQDFKHAM-VLEPQNKAANLAE 597
++ +K YL ++L+ + + LE + A+L +
Sbjct: 291 MAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLED 340
Score = 35.6 bits (82), Expect = 0.047
Identities = 16/97 (16%), Positives = 29/97 (29%), Gaps = 14/97 (14%)
Query: 496 GNAAFKGKQWNKAVNYYSEAIKL-NGTSATYYSNRAAAYLELGCFQQAEEDCSKTIS-LD 553
+K + +KA Y+S+ + Y + L EE L+
Sbjct: 271 TQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLE 330
Query: 554 KKNV------------KAYLRRGTAREALFCYNEALQ 578
K + K Y R ++A + + Q
Sbjct: 331 SKMLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQ 367
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle
orientation, asymmetric CEL divisions; 2.10A {Drosophila
melanogaster}
Length = 411
Score = 46.1 bits (110), Expect = 2e-05
Identities = 18/100 (18%), Positives = 28/100 (28%), Gaps = 17/100 (17%)
Query: 496 GNAAFKGKQWNKAVNYYSEAIKLNGTS----ATYYSNRAAAYLELGCFQQAEEDCSKTIS 551
G V ++ AI+ + YS AY LG + +A + ++
Sbjct: 55 GERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLT 114
Query: 552 L-----DKKNV--------KAYLRRGTAREALFCYNEALQ 578
L D+ G EA C L
Sbjct: 115 LAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLT 154
Score = 44.2 bits (105), Expect = 9e-05
Identities = 8/92 (8%), Positives = 20/92 (21%), Gaps = 17/92 (18%)
Query: 504 QWNKAVNYYSEAIKL------NGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNV 557
N + + + + G + I +++
Sbjct: 23 SGGGGTNSHDGNSQQGSGSDGGSSMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDL 82
Query: 558 K-----------AYLRRGTAREALFCYNEALQ 578
+ AY G +A+ + L
Sbjct: 83 RTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLT 114
Score = 43.1 bits (102), Expect = 2e-04
Identities = 17/102 (16%), Positives = 37/102 (36%), Gaps = 19/102 (18%)
Query: 496 GNAAFKGKQWNKAVNYYSEAIKL------NGTSATYYSNRAAAYLELGCFQQAEEDCSKT 549
GN + + A+ ++ E +++ SN +++ LG F+ A E +T
Sbjct: 230 GNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRT 289
Query: 550 ISL-----DKKNV--------KAYLRRGTAREALFCYNEALQ 578
++L +++ Y A+ +N L
Sbjct: 290 LALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLA 331
Score = 41.9 bits (99), Expect = 5e-04
Identities = 26/143 (18%), Positives = 44/143 (30%), Gaps = 28/143 (19%)
Query: 460 LDLYDSLQEQVNIASNLVPLPDTNGSI-----DASELLKEKGNAAFKGKQWNKAVNYYSE 514
L L L ++++ L L G++ + +AV +Y E
Sbjct: 153 LTLARQLGDRLSEGRALYNL----GNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQE 208
Query: 515 AIKL------NGTSATYYSNRAAAYLELGCFQQAEEDCSKTISL-----DKKNV------ 557
+KL G N Y LG FQ A E + + + D+
Sbjct: 209 NLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSN 268
Query: 558 --KAYLRRGTAREALFCYNEALQ 578
+++ G +A Y L
Sbjct: 269 LGNSHIFLGQFEDAAEHYKRTLA 291
Score = 40.0 bits (94), Expect = 0.002
Identities = 19/102 (18%), Positives = 32/102 (31%), Gaps = 19/102 (18%)
Query: 496 GNAAFKGKQWNKAVNYYSEAIKL------NGTSATYYSNRAAAYLELGCFQQAEEDCSKT 549
GN+ Q+ A +Y + L A + Y L F A E ++
Sbjct: 270 GNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRH 329
Query: 550 ISL-----DKKNV--------KAYLRRGTAREALFCYNEALQ 578
+++ D+ A+ G AL + LQ
Sbjct: 330 LAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQ 371
Score = 35.7 bits (83), Expect = 0.038
Identities = 18/78 (23%), Positives = 30/78 (38%), Gaps = 9/78 (11%)
Query: 496 GNAAFKGKQWNKAVNYYSEAIKLNGTS------ATYYSNRAAAYLELGCFQQAEEDCSKT 549
GNA F +NKA+ Y+ + L + A N +G F +A C +
Sbjct: 93 GNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERH 152
Query: 550 ISLDKKNVKAYLRRGTAR 567
++L + + R R
Sbjct: 153 LTLAR---QLGDRLSEGR 167
Score = 33.0 bits (76), Expect = 0.25
Identities = 15/91 (16%), Positives = 31/91 (34%), Gaps = 22/91 (24%)
Query: 460 LDLYDSLQEQVNIASNLVPLPDTNGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLN 519
L L L E+ A + S+ GN ++N A+ Y++ + +
Sbjct: 290 LALAVELGEREVEAQSC-------YSL---------GNTYTLLHEFNTAIEYHNRHLAIA 333
Query: 520 GTS------ATYYSNRAAAYLELGCFQQAEE 544
A + A+ +G ++A +
Sbjct: 334 QELGDRIGEARACWSLGNAHSAIGGHERALK 364
>3q15_A PSP28, response regulator aspartate phosphatase H;
tetratricopeptide repeat, 3-helix bundle, phosphorelay
signa transduction, phosphatase; 2.19A {Bacillus
subtilis}
Length = 378
Score = 45.6 bits (108), Expect = 3e-05
Identities = 18/124 (14%), Positives = 44/124 (35%), Gaps = 20/124 (16%)
Query: 479 LPDTNGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKL-------NGTSATYYSNRAA 531
LP + I+ +E + A + KQ + ++ + +A+ + + + A
Sbjct: 131 LPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAG 190
Query: 532 AYLELGCFQQAEEDCSKTISLDKK------------NV-KAYLRRGTAREALFCYNEALQ 578
Y + + +A + L N+ +Y R G + A+ + +A +
Sbjct: 191 NYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAK 250
Query: 579 DFKH 582
+
Sbjct: 251 VSRE 254
Score = 45.6 bits (108), Expect = 3e-05
Identities = 20/139 (14%), Positives = 40/139 (28%), Gaps = 20/139 (14%)
Query: 463 YDSLQEQVNIASNLVPLPDTNGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTS 522
Y + + + + L +G F K++ +A+ YY EA K
Sbjct: 75 YGNRPTVTELLETIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFV 134
Query: 523 ------ATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVK--------------AYLR 562
A ++ A AY + + + + + + + Y
Sbjct: 135 SDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDD 194
Query: 563 RGTAREALFCYNEALQDFK 581
+AL AL+
Sbjct: 195 FKHYDKALPHLEAALELAM 213
Score = 44.0 bits (104), Expect = 8e-05
Identities = 19/120 (15%), Positives = 33/120 (27%), Gaps = 18/120 (15%)
Query: 496 GNAAFKGKQWNKAVNYYSEAIKLNGTS------ATYYSNRAAAYLELGCFQQAEEDCSKT 549
K ++KA+ + A++L A N A +Y G Q A E K
Sbjct: 189 AGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKA 248
Query: 550 ISLDKKN------------VKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAANLAE 597
+ ++ + G ++A E L + L
Sbjct: 249 AKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQA 308
Score = 39.4 bits (92), Expect = 0.002
Identities = 13/97 (13%), Positives = 23/97 (23%), Gaps = 14/97 (14%)
Query: 496 GNAAFKGKQWNKAVNYYSEAIKL-NGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDK 554
K Q KA + E + S +Y + E +S +
Sbjct: 268 SWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFE 327
Query: 555 KNV-------------KAYLRRGTAREALFCYNEALQ 578
K + +A Y + L+
Sbjct: 328 KKNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364
Score = 32.9 bits (75), Expect = 0.33
Identities = 10/65 (15%), Positives = 23/65 (35%), Gaps = 1/65 (1%)
Query: 491 LLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTI 550
L+ ++ + ++Y+ E L+ + AA + F+QA K +
Sbjct: 305 FLQAVYKETVDERKIHDLLSYF-EKKNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVL 363
Query: 551 SLDKK 555
+
Sbjct: 364 KAQED 368
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell
division, protein binding; 1.10A {Mus musculus}
Length = 164
Score = 40.6 bits (96), Expect = 4e-04
Identities = 18/105 (17%), Positives = 36/105 (34%), Gaps = 19/105 (18%)
Query: 496 GNAAFKGKQWNKAVNYYSEAIKLNGTS------ATYYSNRAAAYLELGCFQQAEEDCSKT 549
GNA ++ A YY + + L A + Y L +++A + K
Sbjct: 56 GNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKH 115
Query: 550 ISL-----DKKNV--------KAYLRRGTAREALFCYNEALQDFK 581
+++ D+ AY G +A+ + L+ +
Sbjct: 116 LAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISR 160
Score = 39.4 bits (93), Expect = 0.001
Identities = 21/102 (20%), Positives = 35/102 (34%), Gaps = 19/102 (18%)
Query: 496 GNAAFKGKQWNKAVNYYSEAIKLNGTS------ATYYSNRAAAYLELGCFQQAEEDCSKT 549
GN + + AV + + + + YSN AY+ LG F+ A E KT
Sbjct: 16 GNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKT 75
Query: 550 ISL-----DKKNV--------KAYLRRGTAREALFCYNEALQ 578
+ L D+ Y +A+ + + L
Sbjct: 76 LLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLA 117
Score = 28.7 bits (65), Expect = 4.0
Identities = 13/69 (18%), Positives = 23/69 (33%), Gaps = 13/69 (18%)
Query: 523 ATYYSNRAAAYLELGCFQQAEEDCSKTISLDKK------------NV-KAYLRRGTAREA 569
+ N + LG F+ A + + + K+ N+ AY+ G A
Sbjct: 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETA 68
Query: 570 LFCYNEALQ 578
Y + L
Sbjct: 69 SEYYKKTLL 77
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus
thuringiensis serovar ISRAELE35646}
Length = 293
Score = 41.3 bits (96), Expect = 5e-04
Identities = 24/183 (13%), Positives = 55/183 (30%), Gaps = 17/183 (9%)
Query: 435 KYNEHPISISFITYHGGDKFLLDTVLDLYDSLQEQVNIASNLVPLPDTNGSIDASELLKE 494
K HP F+ + + +D + E + + + D ++
Sbjct: 104 KEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYI---ENA 160
Query: 495 KGNAAFKGKQWNKAVNYYSEAIKL-------NGTSATYYSNRAAAYLELGCFQQAEEDCS 547
N + K ++ + + +K N A A ++++ +
Sbjct: 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVN 220
Query: 548 KTISLDKKN------VKAYLRRGTAREALFCYNEALQD-FKHAMVLEPQNKAANLAEKRL 600
K I + + + Y +RG L ++D +K A + E +
Sbjct: 221 KAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFDILEMHAYKEALV 280
Query: 601 RKL 603
K+
Sbjct: 281 NKI 283
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase,
ATP-binding, microtubule INT and trafficking domain,
nucleotide-binding; HET: SRT; 2.40A {Sulfolobus
solfataricus} PDB: 2v6y_B*
Length = 83
Score = 36.9 bits (85), Expect = 0.002
Identities = 15/74 (20%), Positives = 28/74 (37%), Gaps = 12/74 (16%)
Query: 529 RAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEP 588
A LE A + + DK G +A+ Y +A++ +VL P
Sbjct: 2 SAQVMLE----DMARKYAILAVKADK--------EGKVEDAITYYKKAIEVLSQIIVLYP 49
Query: 589 QNKAANLAEKRLRK 602
++ A E+ + +
Sbjct: 50 ESVARTAYEQMINE 63
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex,
nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis,
ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Length = 83
Score = 34.6 bits (79), Expect = 0.009
Identities = 9/41 (21%), Positives = 19/41 (46%)
Query: 562 RRGTAREALFCYNEALQDFKHAMVLEPQNKAANLAEKRLRK 602
+ G A EA+ Y +A++ + L A + E+ + +
Sbjct: 31 KEGNAEEAITNYKKAIEVLAQLVSLYRDGSTAAIYEQMINE 71
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A
{Xanthomonas campestris}
Length = 129
Score = 35.1 bits (81), Expect = 0.015
Identities = 24/118 (20%), Positives = 44/118 (37%), Gaps = 10/118 (8%)
Query: 494 EKGNAAFKGKQWNKAVNYYSEAIKLNGTS-----ATYYSNRAAAYLELGCFQQAEEDCSK 548
A K +++ A + ++L A Y+ +Y FQ AE
Sbjct: 7 NVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYW--LGESYYATRNFQLAEAQFRD 64
Query: 549 TISLDKKNVK---AYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAANLAEKRLRKL 603
+S + K L+ G ++ EA Q + P + AA +A++RL+ +
Sbjct: 65 LVSRYPTHDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQYPGSDAARVAQERLQSI 122
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio
parahaemolyticus RIMD 22 structural genomics, PSI-2,
protein structure initiative; HET: MES; 2.14A {Vibrio
parahaemolyticus}
Length = 176
Score = 34.6 bits (79), Expect = 0.040
Identities = 10/55 (18%), Positives = 21/55 (38%)
Query: 490 ELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEE 544
E L ++ + + + +A+N + +A LE F+ A+E
Sbjct: 7 EQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQE 61
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
a.7.14.1
Length = 117
Score = 31.2 bits (70), Expect = 0.30
Identities = 17/51 (33%), Positives = 21/51 (41%), Gaps = 8/51 (15%)
Query: 540 QQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQN 590
Q+A + SK DK G EAL Y A+Q F H + E Q
Sbjct: 16 QKAIDLASKAAQEDKA--------GNYEEALQLYQHAVQYFLHVVKYEAQG 58
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium
(SGC), motor PR transport protein; 2.80A {Homo sapiens}
Length = 311
Score = 32.5 bits (75), Expect = 0.35
Identities = 16/98 (16%), Positives = 34/98 (34%), Gaps = 23/98 (23%)
Query: 504 QWNKAVNYYSEAIKLNGTS--------ATYYSNRAAAYLELGCFQQAEEDCSKTISLDKK 555
++ +A A+++ A +N A G +++ E + + + +
Sbjct: 126 KYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQT 185
Query: 556 -------NV--------KAYLRRGTAREALFCYNEALQ 578
NV YL++G ++A Y E L
Sbjct: 186 KLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT 223
Score = 30.6 bits (70), Expect = 1.2
Identities = 18/101 (17%), Positives = 40/101 (39%), Gaps = 23/101 (22%)
Query: 504 QWNKAVNYYSEAIKLNGTS--------ATYYSNRAAAYLELGCFQQAEEDCSKTISLDKK 555
++ A N ++A+ + + A +N A Y + G +++AE C + + + +K
Sbjct: 84 KYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREK 143
Query: 556 --------------NV-KAYLRRGTAREALFCYNEALQDFK 581
N+ +G E + Y AL+ ++
Sbjct: 144 VLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQ 184
Score = 28.7 bits (65), Expect = 5.0
Identities = 13/102 (12%), Positives = 26/102 (25%), Gaps = 22/102 (21%)
Query: 504 QWNKAVNYYSEAI-----KLNGTS----ATYYSNRAAAYLELGCFQQAEEDCSKTISLDK 554
++ +A Y E + + G+ + + G +
Sbjct: 210 KFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKA 269
Query: 555 ------------KNV-KAYLRRGTAREALFCYNEALQDFKHA 583
KN+ Y R+G A A++ K
Sbjct: 270 CKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQG 311
Score = 28.7 bits (65), Expect = 5.7
Identities = 17/95 (17%), Positives = 27/95 (28%), Gaps = 24/95 (25%)
Query: 523 ATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNV---------------KAYLRRGTAR 567
N Y G ++ A C + + +K Y + +
Sbjct: 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYK 86
Query: 568 EALFCYNEALQDFK------HAMVLEPQNKAANLA 596
+A N+AL + H V N NLA
Sbjct: 87 DAANLLNDALAIREKTLGKDHPAVAATLN---NLA 118
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat
motif, helis-turn-helix, cell cycle division, mitosis,
TPR repeat; 2.50A {Homo sapiens}
Length = 167
Score = 31.6 bits (71), Expect = 0.37
Identities = 22/122 (18%), Positives = 47/122 (38%), Gaps = 8/122 (6%)
Query: 455 LLDTVLDLYDS-LQEQVNIASNLV-----PLPDTNGSIDASELLKEKGNAAFKGKQWNKA 508
++D V D+ + L V + S+L+ P+ +LL ++ F K++ A
Sbjct: 23 VIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNA 82
Query: 509 VNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTARE 568
V+ Y+ A++ + R + Q + I + K + Y ++
Sbjct: 83 VSKYTMALQQKKALSKTSKVRPSTGNSASTPQS--QCLPSEIEVKYKLAECYTVLKQDKD 140
Query: 569 AL 570
A+
Sbjct: 141 AI 142
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide
repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo
sapiens} SCOP: a.118.8.1
Length = 497
Score = 32.2 bits (72), Expect = 0.45
Identities = 15/78 (19%), Positives = 28/78 (35%)
Query: 465 SLQEQVNIASNLVPLPDTNGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSAT 524
+ + S +V ++ S L G+ A Q ++A +YY A +L ++
Sbjct: 128 IISNKQTHTSAIVKPQSSSCSYICQHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQ 187
Query: 525 YYSNRAAAYLELGCFQQA 542
Y+ A G
Sbjct: 188 PYNQLAILASSKGDHLTT 205
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics,
structural genomics conso SGC, microtubule, motor
protein, phosphoprotein; 2.70A {Homo sapiens} PDB:
3ceq_A
Length = 283
Score = 31.7 bits (73), Expect = 0.54
Identities = 17/122 (13%), Positives = 34/122 (27%), Gaps = 30/122 (24%)
Query: 504 QWNKAVNYYSEAIKLNGTS--------ATYYSNRAAAYLELGCFQQAEEDCSKTISLDKK 555
++ +A A+++ A +N A G ++ E + + +
Sbjct: 100 KYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYAT 159
Query: 556 -------NV--------KAYLRRGTAREALFCYNEALQDFK-------HAMVLEPQNKAA 593
NV YL++G ++A Y E L + A
Sbjct: 160 RLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAE 219
Query: 594 NL 595
Sbjct: 220 ER 221
Score = 29.8 bits (68), Expect = 2.1
Identities = 22/122 (18%), Positives = 42/122 (34%), Gaps = 32/122 (26%)
Query: 504 QWNKAVNYYSEAIKLNGTS--------ATYYSNRAAAYLELGCFQQAEEDCSKTISLDKK 555
AV +A++ + AT + A Y + +++A + +++ +K
Sbjct: 16 PRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREK 75
Query: 556 NV---------------KAYLRRGTAREALFCYNEALQDFK------HAMVLEPQNKAAN 594
+ Y +RG +EA AL+ + H V + N N
Sbjct: 76 TLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLN---N 132
Query: 595 LA 596
LA
Sbjct: 133 LA 134
Score = 27.9 bits (63), Expect = 9.2
Identities = 7/47 (14%), Positives = 11/47 (23%), Gaps = 6/47 (12%)
Query: 504 QWNKAVNYYSEA--IKLNGTS----ATYYSNRAAAYLELGCFQQAEE 544
+ + Y K T + A Y G + A
Sbjct: 227 KRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHT 273
Score = 27.9 bits (63), Expect = 9.8
Identities = 12/99 (12%), Positives = 23/99 (23%), Gaps = 26/99 (26%)
Query: 504 QWNKAVNYYSEAI-----KLNGTS----ATYYSNRAAAYLELGCFQQAEEDCSKTISLDK 554
++ A Y E + K G+ + + + +
Sbjct: 184 KYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEY--GSWY 241
Query: 555 KNVK---------------AYLRRGTAREALFCYNEALQ 578
K K Y R+G A + A +
Sbjct: 242 KACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASR 280
>2nn6_A Polymyositis/scleroderma autoantigen 1; RNA, exosome, PM/SCL,
phosphorolytic, hydrolase/transferase complex; 3.35A
{Homo sapiens} SCOP: d.14.1.4 d.101.1.1
Length = 358
Score = 31.5 bits (71), Expect = 0.82
Identities = 15/86 (17%), Positives = 34/86 (39%), Gaps = 8/86 (9%)
Query: 437 NEHPISISFITYHGGDKFLLDTVLDLYDSLQEQVNIASN----LVPLPDTNG-SIDASEL 491
+ PI +SF + G L+D + + IA N + + + G + ++
Sbjct: 205 HHMPICVSFAFFQQGTYLLVDPNEREERVMDGLLVIAMNKHREICTIQSSGGIMLLKDQV 264
Query: 492 LKEKGNAAFKGKQWNKAVNYYSEAIK 517
L+ A K + + + +A++
Sbjct: 265 LRCSKIAGVKVAEITELIL---KALE 287
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics,
riken structural genomics/proteomics initiative, RSGI,
unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Length = 93
Score = 27.9 bits (62), Expect = 3.2
Identities = 8/61 (13%), Positives = 24/61 (39%), Gaps = 1/61 (1%)
Query: 542 AEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAANLAEKRLR 601
+ D + +++ K+ V+ ++AL CY E + + ++ + ++
Sbjct: 8 QDSDSTAAVAVLKRAVELD-AESRYQQALVCYQEGIDMLLQVLKGTKESSKRCVLRTKIS 66
Query: 602 K 602
Sbjct: 67 G 67
>3qnk_A Putative lipoprotein; alpha-alpha superhelix, structural genomics,
joint center FO structural genomics, JCSG, protein
structure initiative; 2.70A {Bacteroides fragilis}
Length = 517
Score = 29.3 bits (66), Expect = 3.7
Identities = 23/120 (19%), Positives = 42/120 (35%), Gaps = 35/120 (29%)
Query: 455 LLDTVLDLYDSLQ------EQV--------NIASNLVPLPDTNGSID---ASELLKEKGN 497
LLD VL + D+ + ++ A+ + LP + GS + A+ KG
Sbjct: 131 LLDKVLTMEDNWEIPRSSEKECYDFILEDLKKATEM--LPASYGSREKGRAT-----KGA 183
Query: 498 A-AFKGK------QWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTI 550
A A K + ++ + +E KL Y + + +D + I
Sbjct: 184 AYALKSRVELYDKRYEDVIKSCAEVYKLGYEL--VDGTTPEKYRSI--WWTTNKDNKEII 239
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein
superhelix, transc activator; 1.45A {Escherichia coli}
SCOP: a.118.8.2
Length = 373
Score = 28.8 bits (64), Expect = 4.9
Identities = 13/99 (13%), Positives = 20/99 (20%), Gaps = 20/99 (20%)
Query: 504 QWNKAVNYYSEAIKLNGT--------SATYYSNRAAAYLELGCFQQAEEDCSKTISLDKK 555
A +A +L RA +AE I +
Sbjct: 108 FLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSS 167
Query: 556 N------------VKAYLRRGTAREALFCYNEALQDFKH 582
++ L RG A N +
Sbjct: 168 YQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGN 206
>2gkp_A Hypothetical protein NMB0488; structural genomics, APC83854, PSI,
PR structure initiative; HET: MSE; 1.35A {Neisseria
meningitidis} SCOP: d.351.1.1
Length = 167
Score = 28.1 bits (62), Expect = 5.0
Identities = 19/92 (20%), Positives = 30/92 (32%), Gaps = 28/92 (30%)
Query: 311 GTATLKALS-SVMLSLQRYEFKTI---------YEEWVKSAKPRLGYNVFERVLEAINTT 360
GT L+AL+ S E + YE+WV LGY
Sbjct: 55 GTTVLQALANSRTFVYDSPEDQDFFDTEKIRQRYEDWVAKLCGNLGYK------------ 102
Query: 361 QDNIKILYKVRNEMRAALQRLLKDDKILVIPT 392
+ L+K N M + + + + P+
Sbjct: 103 --TRRALFK--NMMSVDIWLH--NGCLKISPS 128
>3e9l_A PRE-mRNA-processing-splicing factor 8; nucleotidyl transfer,
disease mutation, MRN splicing, nucleus, phosphoprotein,
retinitis pigmentosa; 1.95A {Homo sapiens} SCOP:
c.55.3.14
Length = 257
Score = 28.1 bits (62), Expect = 7.0
Identities = 19/124 (15%), Positives = 51/124 (41%), Gaps = 10/124 (8%)
Query: 256 QLSKVPKLKTIHVISKAIESLSGYQNPEH--------MNVGQYIASNVPSLKGLRAQSTS 307
+L ++ K KT ++ I SL + P+ ++ + + P++ ++
Sbjct: 73 RLGQLAKWKTAEEVAALIRSLPVEEQPKQIIVTRKGMLDPLEVHLLDFPNIVIKGSELQL 132
Query: 308 PENGTATLKALSSVMLSLQRYEFK--TIYEEWVKSAKPRLGYNVFERVLEAINTTQDNIK 365
P ++ ++L + +Y++W+K+ ++ +L A++ D K
Sbjct: 133 PFQACLKVEKFGDLILKATEPQMVLFNLYDDWLKTISSYTAFSRLILILRALHVNNDRAK 192
Query: 366 ILYK 369
++ K
Sbjct: 193 VILK 196
>3enb_A PRE-mRNA-processing-splicing factor 8; PRP8 domain IV, beta finger,
RNAse H, spliceosome, U5-220K, mutation, mRNA splicing,
nucleus; 1.85A {Homo sapiens} SCOP: c.55.3.14 PDB:
3lru_A
Length = 222
Score = 28.1 bits (62), Expect = 8.3
Identities = 19/124 (15%), Positives = 51/124 (41%), Gaps = 10/124 (8%)
Query: 256 QLSKVPKLKTIHVISKAIESLSGYQNPEH--------MNVGQYIASNVPSLKGLRAQSTS 307
+L ++ K KT ++ I SL + P+ ++ + + P++ ++
Sbjct: 64 RLGQLAKWKTAEEVAALIRSLPVEEQPKQIIVTRKGMLDPLEVHLLDFPNIVIKGSELQL 123
Query: 308 PENGTATLKALSSVMLSLQRYEFK--TIYEEWVKSAKPRLGYNVFERVLEAINTTQDNIK 365
P ++ ++L + +Y++W+K+ ++ +L A++ D K
Sbjct: 124 PFQACLKVEKFGDLILKATEPQMVLFNLYDDWLKTISSYTAFSRLILILRALHVNNDRAK 183
Query: 366 ILYK 369
++ K
Sbjct: 184 VILK 187
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA
ATPase, ATP-binding, coiled coil, membrane,
nucleotide-binding, phosphorylation; HET: ATP; 3.00A
{Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A
2jq9_A 2k3w_A 1yxr_A
Length = 444
Score = 28.0 bits (62), Expect = 9.5
Identities = 18/56 (32%), Positives = 22/56 (39%), Gaps = 8/56 (14%)
Query: 539 FQQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAAN 594
Q+A + SK DK G EAL Y A+Q F H + E Q A
Sbjct: 8 LQKAIDLASKAAQEDKA--------GNYEEALQLYQHAVQYFLHVVKYEAQGDKAK 55
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.134 0.390
Gapped
Lambda K H
0.267 0.0778 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 9,412,394
Number of extensions: 593300
Number of successful extensions: 2614
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2085
Number of HSP's successfully gapped: 360
Length of query: 605
Length of database: 6,701,793
Length adjustment: 99
Effective length of query: 506
Effective length of database: 3,937,614
Effective search space: 1992432684
Effective search space used: 1992432684
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (26.8 bits)