Your job contains 1 sequence.
>007402
MGKSKEIPSKEVKQAEEEEAEAEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLI
LEGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVM
ALIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSD
SLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYIL
TLPEVGDVKDEVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLK
LFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSR
KSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLV
SPDEMKIFEEIKSFVGDDENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESR
AQDLRNEILNSEKLKAHFEVNPKDLDLLKHDKDLSKKPPASHLRDVPDYLLDAKTQEACK
MVKLARAAMGNKNSSRRQGPRRKFRKSDPLKSFSAEPTKRAGKGRMKREGRNGDDTGKHK
KKKSL
The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 007402
(605 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2116920 - symbol:AT4G34910 species:3702 "Arabi... 1911 2.3e-197 1
DICTYBASE|DDB_G0280407 - symbol:ddx56 "DEAD/DEAH box heli... 648 2.6e-98 2
ZFIN|ZDB-GENE-040825-3 - symbol:ddx56 "DEAD (Asp-Glu-Ala-... 951 1.2e-95 1
ASPGD|ASPL0000000390 - symbol:AN6374 species:162425 "Emer... 646 2.1e-94 2
SGD|S000004266 - symbol:DBP9 "DEAD-box protein required f... 589 1.6e-92 2
MGI|MGI:1277172 - symbol:Ddx56 "DEAD (Asp-Glu-Ala-Asp) bo... 918 3.9e-92 1
UNIPROTKB|G3V6M5 - symbol:Ddx56 "Protein Ddx56" species:1... 917 5.0e-92 1
UNIPROTKB|Q3SZ40 - symbol:DDX56 "Probable ATP-dependent R... 898 5.1e-90 1
UNIPROTKB|Q9NY93 - symbol:DDX56 "Probable ATP-dependent R... 883 2.0e-88 1
FB|FBgn0001565 - symbol:Hlc "Helicase" species:7227 "Dros... 848 1.0e-84 1
UNIPROTKB|F1SSH6 - symbol:DDX56 "Uncharacterized protein"... 847 1.3e-84 1
RGD|1303195 - symbol:Ddx56 "DEAD (Asp-Glu-Ala-Asp) box he... 760 2.1e-75 1
CGD|CAL0004220 - symbol:orf19.3393 species:5476 "Candida ... 716 9.9e-71 1
UNIPROTKB|Q5A4P9 - symbol:DBP9 "ATP-dependent RNA helicas... 716 9.9e-71 1
WB|WBGene00016073 - symbol:C24H12.4 species:6239 "Caenorh... 702 3.0e-69 1
UNIPROTKB|G3V0G3 - symbol:DDX56 "DEAD (Asp-Glu-Ala-Asp) b... 697 1.0e-68 1
UNIPROTKB|J9NSI3 - symbol:DDX56 "Uncharacterized protein"... 669 9.4e-66 1
POMBASE|SPCC1494.06c - symbol:SPCC1494.06c "ATP-dependent... 650 9.7e-64 1
UNIPROTKB|H7C3E9 - symbol:DDX56 "Probable ATP-dependent R... 650 9.7e-64 1
UNIPROTKB|Q8EDC4 - symbol:SO_2838 "ATP-dependent RNA heli... 401 1.3e-51 2
TIGR_CMR|SO_2838 - symbol:SO_2838 "ATP-dependent RNA heli... 401 1.3e-51 2
UNIPROTKB|Q48AV0 - symbol:CPS_0042 "ATP-dependent RNA hel... 375 4.2e-49 2
TIGR_CMR|CPS_0042 - symbol:CPS_0042 "ATP-dependent RNA he... 375 4.2e-49 2
UNIPROTKB|Q9KNA4 - symbol:VC_A0061 "ATP-dependent RNA hel... 367 1.5e-47 2
TIGR_CMR|VC_A0061 - symbol:VC_A0061 "ATP-dependent RNA he... 367 1.5e-47 2
UNIPROTKB|Q83DM8 - symbol:rhlE "ATP-dependent RNA helicas... 354 1.4e-46 2
TIGR_CMR|CBU_0670 - symbol:CBU_0670 "ATP-dependent RNA he... 354 1.4e-46 2
UNIPROTKB|Q8ECL2 - symbol:SO_3125 "ATP-dependent RNA heli... 375 1.8e-46 2
TIGR_CMR|SO_3125 - symbol:SO_3125 "ATP-dependent RNA heli... 375 1.8e-46 2
UNIPROTKB|Q9KLH6 - symbol:VC_A0768 "ATP-dependent RNA hel... 363 3.1e-46 2
TIGR_CMR|VC_A0768 - symbol:VC_A0768 "ATP-dependent RNA he... 363 3.1e-46 2
TIGR_CMR|CPS_1418 - symbol:CPS_1418 "ATP-dependent RNA he... 369 1.3e-45 2
UNIPROTKB|Q9KS53 - symbol:VC1407 "ATP-dependent RNA helic... 363 4.5e-45 2
TIGR_CMR|VC_1407 - symbol:VC_1407 "ATP-dependent RNA heli... 363 4.5e-45 2
UNIPROTKB|P25888 - symbol:rhlE "ATP-dependent RNA helicas... 355 6.2e-45 2
WB|WBGene00022148 - symbol:Y71G12B.8 species:6239 "Caenor... 362 8.1e-45 2
TAIR|locus:2173517 - symbol:AT5G60990 species:3702 "Arabi... 343 3.1e-44 2
UNIPROTKB|Q47Z59 - symbol:CPS_3215 "Putative ATP-dependen... 342 8.3e-44 2
TIGR_CMR|CPS_3215 - symbol:CPS_3215 "putative ATP-depende... 342 8.3e-44 2
UNIPROTKB|Q8EBV7 - symbol:SO_3388 "ATP-dependent RNA heli... 347 1.2e-43 2
TIGR_CMR|SO_3388 - symbol:SO_3388 "ATP-dependent RNA heli... 347 1.2e-43 2
TIGR_CMR|CPS_3401 - symbol:CPS_3401 "ATP-dependent RNA he... 359 1.3e-43 2
TIGR_CMR|CPS_1125 - symbol:CPS_1125 "ATP-dependent RNA he... 351 1.3e-43 2
UNIPROTKB|Q8EHT1 - symbol:SO_1136 "ATP-dependent RNA heli... 364 3.4e-43 2
TIGR_CMR|SO_1136 - symbol:SO_1136 "ATP-dependent RNA heli... 364 3.4e-43 2
UNIPROTKB|Q8EI96 - symbol:srmB "ATP-dependent RNA helicas... 329 1.7e-42 2
TIGR_CMR|SO_0947 - symbol:SO_0947 "ATP-dependent RNA heli... 329 1.7e-42 2
TAIR|locus:2130918 - symbol:AT4G16630 species:3702 "Arabi... 379 3.7e-42 2
TIGR_CMR|SO_1383 - symbol:SO_1383 "ATP-dependent RNA heli... 330 4.3e-42 2
UNIPROTKB|Q9KMW4 - symbol:VC_A0204 "ATP-dependent RNA hel... 337 5.9e-42 2
TIGR_CMR|VC_A0204 - symbol:VC_A0204 "ATP-dependent RNA he... 337 5.9e-42 2
UNIPROTKB|Q48PB7 - symbol:PSPPH_0449 "ATP-dependent RNA h... 350 1.0e-41 3
UNIPROTKB|Q4K4H4 - symbol:rhlE_2 "Putative ATP-dependent ... 356 1.2e-41 2
DICTYBASE|DDB_G0281711 - symbol:ddx27 "DEAD/DEAH box heli... 351 3.1e-41 3
UNIPROTKB|F1NQV5 - symbol:DDX27 "Uncharacterized protein"... 338 3.1e-41 3
SGD|S000001767 - symbol:TIF1 "Translation initiation fact... 331 1.2e-40 2
SGD|S000003674 - symbol:TIF2 "Translation initiation fact... 331 1.2e-40 2
UNIPROTKB|Q96GQ7 - symbol:DDX27 "Probable ATP-dependent R... 346 1.9e-40 3
UNIPROTKB|Q8EE19 - symbol:SO_2571 "ATP-dependent RNA heli... 337 2.1e-40 2
TIGR_CMR|SO_2571 - symbol:SO_2571 "ATP-dependent RNA heli... 337 2.1e-40 2
MGI|MGI:2385884 - symbol:Ddx27 "DEAD (Asp-Glu-Ala-Asp) bo... 347 2.1e-40 3
UNIPROTKB|J9P9C6 - symbol:DDX27 "Uncharacterized protein"... 347 2.8e-40 3
UNIPROTKB|F1Q073 - symbol:DDX27 "Uncharacterized protein"... 347 4.0e-40 2
UNIPROTKB|E1C187 - symbol:DDX27 "Uncharacterized protein"... 329 4.5e-40 3
UNIPROTKB|A1A4H6 - symbol:DDX27 "Probable ATP-dependent R... 345 5.2e-40 3
ASPGD|ASPL0000062195 - symbol:AN10125 species:162425 "Eme... 357 9.3e-40 2
TIGR_CMR|SO_3783 - symbol:SO_3783 "ATP-dependent RNA heli... 327 3.1e-39 2
CGD|CAL0004095 - symbol:TIF species:5476 "Candida albican... 318 3.9e-39 2
UNIPROTKB|P87206 - symbol:TIF1 "ATP-dependent RNA helicas... 318 3.9e-39 2
CGD|CAL0000864 - symbol:DRS1 species:5476 "Candida albica... 362 5.0e-39 3
UNIPROTKB|Q5ACK7 - symbol:DRS1 "ATP-dependent RNA helicas... 362 5.0e-39 3
ZFIN|ZDB-GENE-031001-8 - symbol:ddx27 "DEAD (Asp-Glu-Ala-... 340 6.2e-39 2
GENEDB_PFALCIPARUM|PFL2010c - symbol:PFL2010c "DEAD/DEAH ... 258 6.4e-39 3
UNIPROTKB|Q8I511 - symbol:PFL2010c "DEAD/DEAH box helicas... 258 6.4e-39 3
UNIPROTKB|A4QYM6 - symbol:DRS1 "ATP-dependent RNA helicas... 349 7.6e-39 2
ASPGD|ASPL0000037981 - symbol:AN2932 species:162425 "Emer... 304 8.3e-39 2
UNIPROTKB|A4QVP2 - symbol:TIF1 "ATP-dependent RNA helicas... 303 1.1e-38 2
TAIR|locus:2032910 - symbol:RH36 "RNA helicase 36" specie... 327 3.3e-38 3
UNIPROTKB|O05855 - symbol:rhlE "PROBABLE ATP-DEPENDENT RN... 331 4.9e-38 2
TIGR_CMR|GSU_0491 - symbol:GSU_0491 "ATP-dependent RNA he... 319 5.7e-38 2
POMBASE|SPAC30D11.03 - symbol:ddx27 "ATP-dependent RNA he... 342 9.1e-38 2
FB|FBgn0021995 - symbol:Rs1 "Rs1" species:7227 "Drosophil... 325 4.2e-37 3
TAIR|locus:2087832 - symbol:PMH1 "putative mitochondrial ... 332 8.3e-37 2
UNIPROTKB|F1NA53 - symbol:DDX49 "Uncharacterized protein"... 321 9.4e-37 2
TAIR|locus:2087852 - symbol:PMH2 "putative mitochondrial ... 334 1.1e-36 2
POMBASE|SPAC1006.07 - symbol:SPAC1006.07 "translation ini... 287 1.6e-36 2
ASPGD|ASPL0000072637 - symbol:AN4903 species:162425 "Emer... 318 2.1e-36 2
DICTYBASE|DDB_G0269192 - symbol:tifA "eukaryotic translat... 297 2.9e-36 2
UNIPROTKB|Q9KU63 - symbol:VC_0660 "ATP-dependent RNA heli... 300 4.5e-36 2
TIGR_CMR|VC_0660 - symbol:VC_0660 "ATP-dependent RNA heli... 300 4.5e-36 2
TIGR_CMR|BA_4509 - symbol:BA_4509 "ATP-dependent RNA heli... 313 5.6e-36 2
POMBASE|SPCC10H11.01 - symbol:prp11 "ATP-dependent RNA he... 321 8.5e-36 2
TAIR|locus:504955106 - symbol:emb1138 "embryo defective 1... 343 1.3e-35 2
TIGR_CMR|CPS_4097 - symbol:CPS_4097 "ATP-dependent RNA he... 301 1.5e-35 2
UNIPROTKB|Q8EJQ5 - symbol:rhlB "ATP-dependent RNA helicas... 314 2.0e-35 2
TIGR_CMR|SO_0407 - symbol:SO_0407 "ATP-dependent RNA heli... 314 2.0e-35 2
UNIPROTKB|Q0C354 - symbol:rhlE "ATP-dependent RNA helicas... 320 4.5e-35 2
UNIPROTKB|P21507 - symbol:srmB "SrmB, DEAD-box RNA helica... 311 4.7e-35 2
TAIR|locus:2065215 - symbol:AT2G47330 species:3702 "Arabi... 332 6.0e-35 3
SGD|S000003931 - symbol:DRS1 "Nucleolar DEAD-box protein ... 330 7.8e-35 3
WARNING: Descriptions of 768 database sequences were not reported due to the
limiting value of parameter V = 100.
>TAIR|locus:2116920 [details] [associations]
symbol:AT4G34910 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0006606
"protein import into nucleus" evidence=RCA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:CP002687
GenomeReviews:CT486007_GR GO:GO:0003723 EMBL:AL161586
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 EMBL:AL079347
KO:K14810 HOGENOM:HOG000253015 OMA:TFLMSAT EMBL:BT002816
EMBL:BT004442 EMBL:AJ010467 IPI:IPI00520936 PIR:T10237 PIR:T51745
RefSeq:NP_195217.1 UniGene:At.24924 ProteinModelPortal:Q9SW44
SMR:Q9SW44 STRING:Q9SW44 PaxDb:Q9SW44 PRIDE:Q9SW44
EnsemblPlants:AT4G34910.1 GeneID:829643 KEGG:ath:AT4G34910
KEGG:dosa:Os03t0728800-01 GeneFarm:933 TAIR:At4g34910
InParanoid:Q9SW44 PhylomeDB:Q9SW44 ProtClustDB:CLSN2685920
Genevestigator:Q9SW44 GermOnline:AT4G34910 Uniprot:Q9SW44
Length = 626
Score = 1911 (677.8 bits), Expect = 2.3e-197, P = 2.3e-197
Identities = 386/579 (66%), Positives = 463/579 (79%)
Query: 31 LGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFN 90
LGLD RL+ AL KKGI+KPTLIQQ++IP ILEGKDVVARAKTGSGKT AYLLPLL +LF+
Sbjct: 51 LGLDSRLIRALTKKGIEKPTLIQQSAIPYILEGKDVVARAKTGSGKTLAYLLPLLQKLFS 110
Query: 91 -ESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAA 149
+S K KLAP+A +LVP+RELCQQVY+EV +LIELC+ VQLK VQLTSSM ASD+R A
Sbjct: 111 ADSVSKKKLAPSAFILVPSRELCQQVYTEVSSLIELCR--VQLKAVQLTSSMSASDMRNA 168
Query: 150 LAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVI 209
LAG P+I+++TP C+PKC + GVL+ + S+SL ILVLDEADLLLSYGYED+L++++++I
Sbjct: 169 LAGLPEILVSTPACIPKCFAAGVLEPTAVSESLSILVLDEADLLLSYGYEDNLRSVTSII 228
Query: 210 PRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDK 269
PR CQCLLMSAT+SSDV+KLKKLILHNP +LTL E D K+E +P NVQQFWISCS +DK
Sbjct: 229 PRRCQCLLMSATTSSDVEKLKKLILHNPIVLTLTEDND-KEEAVPSNVQQFWISCSAQDK 287
Query: 270 XXXXXXXXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEF 329
VQKK LIF NTIDM FRLKLFLEKFGIKSAILN ELPQNSRLHILE+F
Sbjct: 288 LLHILALLKLEVVQKKILIFINTIDMGFRLKLFLEKFGIKSAILNGELPQNSRLHILEQF 347
Query: 330 NAGLFDYLIATDD-TQTKEKDQSDEG-GHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHT 387
NAGLFDYLIATDD +QTK++ + +G + +++K+ K K KLD+EFGVVRGIDFK VHT
Sbjct: 348 NAGLFDYLIATDDNSQTKKQKEEAKGEANKENKKNNKRSKPKLDAEFGVVRGIDFKKVHT 407
Query: 388 VINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDDENEDSNIIA 447
VINF+MPQ+ GY+HRIGRTGRAY++G+SVSL+SPDEM+ FE+IKSF+ D+N+D +II
Sbjct: 408 VINFDMPQSVTGYIHRIGRTGRAYSSGSSVSLISPDEMEGFEDIKSFLASDKNKDIDIIT 467
Query: 448 PFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPXXXXX 507
PFPLL +NAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEI+NSEKLKAHFE NP
Sbjct: 468 PFPLLTENAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEIINSEKLKAHFEANPRDLDL 527
Query: 508 XXXXXXXXXXPPASHLRDVPDYLLDAKTQEACKMVKLARAAMGNKNSSRRQGPR-----R 562
PA HL+D+P+YL+DAKTQEA KMVKLARAAMGN S G R +
Sbjct: 528 LRHDKPLSKTAPAPHLKDIPEYLVDAKTQEASKMVKLARAAMGNTRRSGGGGGRNNKNKK 587
Query: 563 KFRK-SDPLKSFSAEPTKRAGKGRMKREGRNGDDTGKHK 600
+ RK SDPLK+F+ +KR G+ ++G++ T K K
Sbjct: 588 RSRKGSDPLKTFNPNGSKRGAVGQ--KDGKDSSSTKKQK 624
>DICTYBASE|DDB_G0280407 [details] [associations]
symbol:ddx56 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0006364 "rRNA processing"
evidence=IEA;ISS] [GO:0005730 "nucleolus" evidence=IEA;ISS]
[GO:0000027 "ribosomal large subunit assembly" evidence=ISS]
[GO:0042254 "ribosome biogenesis" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 dictyBase:DDB_G0280407 GO:GO:0005524 GO:GO:0005730
GenomeReviews:CM000152_GR GO:GO:0003723 EMBL:AAFI02000036
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0000027 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K14810 HSSP:P10081 RefSeq:XP_641158.1
STRING:Q54VF1 EnsemblProtists:DDB0234216 GeneID:8622538
KEGG:ddi:DDB_G0280407 OMA:CARETEM ProtClustDB:CLSZ2730700
Uniprot:Q54VF1
Length = 685
Score = 648 (233.2 bits), Expect = 2.6e-98, Sum P(2) = 2.6e-98
Identities = 134/323 (41%), Positives = 204/323 (63%)
Query: 31 LGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFN 90
+GLD R++ AL K G Q P+L+Q SIPL L+GKD++A+A+TGSGKT AY +P++ ++
Sbjct: 28 MGLDNRILRALKKMGFQNPSLVQSKSIPLSLQGKDILAKARTGSGKTAAYSIPIIQKVLM 87
Query: 91 ESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAAL 150
+ A+VLVPTRELC+QV + + C Q + VVQL + + + L
Sbjct: 88 AKEKSNIKGVKAVVLVPTRELCEQVKNHFNQVSYYC--QQLVSVVQLGNDKTLDEQKGLL 145
Query: 151 AGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIP 210
PD++++TP + + L +Q +S +L ILV+DEADL+L+YG+++D+ + + +P
Sbjct: 146 RDIPDVIVSTPTRLVQHLENKTIQLQS---TLDILVIDEADLVLNYGHQNDINIIKSFLP 202
Query: 211 RGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKX 270
+ CQC LMSAT + +V++LKKL+LH P +L L E D+ I N+ ++ I C+E DK
Sbjct: 203 KVCQCFLMSATLTKEVEELKKLVLHTPAVLKLEE-----DKAIQTNLSEYSIKCAEVDKF 257
Query: 271 XXXXXXXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFN 330
+Q K L F N + ++LKLF E+F IK A+LN+ELP NSR I+ +FN
Sbjct: 258 LLVFSLLRLRLMQGKILFFVNDTNNCYKLKLFFERFHIKCAVLNSELPINSRHDIILQFN 317
Query: 331 AGLFDYLIATDDTQTKEKDQSDE 353
GLFDYLIATD++ + ++ +E
Sbjct: 318 KGLFDYLIATDESFKSDSNKKEE 340
Score = 348 (127.6 bits), Expect = 2.6e-98, Sum P(2) = 2.6e-98
Identities = 84/244 (34%), Positives = 132/244 (54%)
Query: 341 DDTQTKEKDQSDEGGHVDSRKSK--KHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAA 398
+D + +E D +E D +K+K K +K D E+GV RGIDF+NV V+NF+ P+
Sbjct: 390 EDEENEEDDDEEENEEDDDKKNKNKKINNSKGDKEYGVARGIDFRNVDIVVNFDFPRTIK 449
Query: 399 GYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDDENEDSNIIAPFPLLAQNAVE 458
Y+HRIGRT R N G ++S V+ ++ +++ GD N+ PF NA+E
Sbjct: 450 NYIHRIGRTARGTNKGIALSFVTYHNEELLKKVSKTRGD---AGYNL-KPFEF-KMNAIE 504
Query: 459 SLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPXXXXXXXXXXXXXXXP 518
RYR EDV +++ A++E++ +L+ E+LN+EKLK+HF NP
Sbjct: 505 GFRYRVEDVLRTIGIRAIKEAKKTELKQELLNNEKLKSHFSENPQDLLALKHDTTLIKKQ 564
Query: 519 PASHLRDVPDYLLDAKTQE-ACKMVKL--ARAAMGNKNSSRRQ-GPRRKF----RKSDPL 570
HLR VP+YLL + + A + +++ +R G+ ++ R G +K RK D L
Sbjct: 565 VPLHLRVVPEYLLPTQFKNHADQKLEIIPSRPQSGHHGTTGRSLGVNKKLEQKKRKKDIL 624
Query: 571 KSFS 574
K+ S
Sbjct: 625 KTLS 628
Score = 45 (20.9 bits), Expect = 2.3e-66, Sum P(2) = 2.3e-66
Identities = 10/37 (27%), Positives = 17/37 (45%)
Query: 563 KFRKSDPLKSFSAEPTKRAGKGRMKREGRNGDDTGKH 599
++R D L++ K A K +K+E N + H
Sbjct: 507 RYRVEDVLRTIGIRAIKEAKKTELKQELLNNEKLKSH 543
>ZFIN|ZDB-GENE-040825-3 [details] [associations]
symbol:ddx56 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
56" species:7955 "Danio rerio" [GO:0004386 "helicase activity"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
ZFIN:ZDB-GENE-040825-3 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 KO:K14810 OMA:TFLMSAT
GeneTree:ENSGT00550000074946 CTD:54606 HOVERGEN:HBG051334
EMBL:CR394525 EMBL:AY648812 IPI:IPI00491475 RefSeq:NP_001003876.1
UniGene:Dr.79779 STRING:Q6DRE7 Ensembl:ENSDART00000034555
GeneID:445399 KEGG:dre:445399 InParanoid:Q6DRE7 NextBio:20832104
Uniprot:Q6DRE7
Length = 557
Score = 951 (339.8 bits), Expect = 1.2e-95, P = 1.2e-95
Identities = 215/554 (38%), Positives = 315/554 (56%)
Query: 31 LGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFN 90
+GLD RL+ AL G +PTLIQ+ +IPL LEGKD++ARA+TGSGKT AY +PL+ R+
Sbjct: 11 MGLDDRLLKALADLGWSQPTLIQEKAIPLALEGKDLLARARTGSGKTAAYAVPLIQRVLT 70
Query: 91 ESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAAL 150
+ A A+VLVPT+EL QQV + + L C V +V ++ S + L
Sbjct: 71 SKQTVREQAVRAVVLVPTKELGQQVQTMIRQLTAYCSRDV--RVADISGKADLSAQKPIL 128
Query: 151 AGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIP 210
PDIV++TP + ++ LQ S SL++LV+DEADLL S+G+E DLK L +P
Sbjct: 129 MEKPDIVVSTPSRIQAHINAQNLQLHS---SLEMLVIDEADLLFSFGFEADLKNLLCHLP 185
Query: 211 RGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKX 270
+ Q LMSAT + DV LK+L+LHNP L L + + D +QQF I C E DK
Sbjct: 186 KIYQAFLMSATLNDDVQALKELVLHNPVTLKL-QGSQLPDS---SQLQQFSIKCEEEDKF 241
Query: 271 XXXXXXXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFN 330
+Q K L+F + +D ++RLKLFLE+F I + +LN+ELP +SR HI+ +FN
Sbjct: 242 LLIYTMLKLGLIQGKTLLFVSDVDRSYRLKLFLEQFSIPACVLNSELPVHSRCHIISQFN 301
Query: 331 AGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVIN 390
G ++Y+IA+D+ + S + +K K K D E+GV RGIDF NV VIN
Sbjct: 302 QGFYNYIIASDEQGLESPAGSSQKTQEKGKKKKGTGKKGKDKEYGVSRGIDFHNVSNVIN 361
Query: 391 FEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDDENEDSNIIAPFP 450
F+ P + Y+HR+GRT RA N G ++S +S E+ + E+++ + D N + ++ P+
Sbjct: 362 FDFPTSVESYIHRVGRTARADNPGTALSFISHAELSMLSEVENALTGDSN--NCVLKPYE 419
Query: 451 LLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPXXXXXXXX 510
+ +E RYR D +SVTK AV+E+R ++++ E+LNSEKLK +FE NP
Sbjct: 420 FRMEE-IEGFRYRCRDGMRSVTKQAVKEARLKEIKQELLNSEKLKTYFEDNPRDLQLLRH 478
Query: 511 XXXXXXXPPASHLRDVPDYLLDAKTQEACKMVKLARAAMGNKNSSRRQGPRRK-FRKSDP 569
H+++VP+YL+ + + R K+S +K +R +P
Sbjct: 479 DKDLHPAIIKPHMKNVPEYLIPTALKSLVNPLNQRRKRKKVKSSGVMLSSFKKNYRGRNP 538
Query: 570 LKSFSAEPTKRAGK 583
LKSF +R K
Sbjct: 539 LKSFRYAKKRRGEK 552
>ASPGD|ASPL0000000390 [details] [associations]
symbol:AN6374 species:162425 "Emericella nidulans"
[GO:0000463 "maturation of LSU-rRNA from tricistronic rRNA
transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0005829 "cytosol" evidence=IEA] [GO:0004004 "ATP-dependent RNA
helicase activity" evidence=IEA] [GO:0033680 "ATP-dependent DNA/RNA
helicase activity" evidence=IEA] [GO:0004003 "ATP-dependent DNA
helicase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0003723 EMBL:AACD01000107 EMBL:BN001301 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 KO:K14810
RefSeq:XP_663978.1 ProteinModelPortal:Q5AZA6 STRING:Q5AZA6
EnsemblFungi:CADANIAT00006610 GeneID:2871271 KEGG:ani:AN6374.2
HOGENOM:HOG000253015 OMA:TFLMSAT OrthoDB:EOG4DFSWQ Uniprot:Q5AZA6
Length = 610
Score = 646 (232.5 bits), Expect = 2.1e-94, Sum P(2) = 2.1e-94
Identities = 147/316 (46%), Positives = 198/316 (62%)
Query: 31 LGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFN 90
L LD RL AL K+ KPT +Q +IPL LEGKD++ARAKTGSGKT AY+LP+L +
Sbjct: 33 LNLDPRLRQALVKEKFSKPTPVQAKAIPLALEGKDILARAKTGSGKTAAYVLPILQTILQ 92
Query: 91 ESS--PKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRA 148
+ + P K A L+LVPTREL +QV + C G+ ++ V LT + + +A
Sbjct: 93 KKAIDPSMK-ATTGLILVPTRELAEQVQKVITTFAAFC-GK-DVRSVNLTQKVSDAVQKA 149
Query: 149 ALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAV 208
LA PDIV++TP + L T L ++L LV+DEADL+LSYGYEDD+ ALS
Sbjct: 150 MLADYPDIVVSTPARVIANLGTSALSL----ENLTHLVIDEADLVLSYGYEDDINALSKA 205
Query: 209 IPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERD 268
IPRG Q LMSAT +++VD LK L +P IL L + KD+ V QF + C+E +
Sbjct: 206 IPRGVQTFLMSATLTAEVDTLKGLFCRSPVILKLED----KDDH-GAGVSQFVVKCAEDE 260
Query: 269 KXXXXXXXXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEE 328
K ++ K +IF ID ++RLKLFLE+FGIKS ILN+ELP NSR+H++EE
Sbjct: 261 KFLLTYVIFKLQLIKGKVIIFVGDIDRSYRLKLFLEQFGIKSCILNSELPVNSRIHVVEE 320
Query: 329 FNAGLFDYLIATDDTQ 344
FN G++D +IA D+ +
Sbjct: 321 FNKGVYDIIIAADEQE 336
Score = 313 (115.2 bits), Expect = 2.1e-94, Sum P(2) = 2.1e-94
Identities = 77/259 (29%), Positives = 128/259 (49%)
Query: 341 DDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGY 400
DD ++D+ +R K+ + + ++G+ RGIDF+NV V+NF++P ++ Y
Sbjct: 353 DDELLSDEDEETSAKAASTRTDKRRKLSSKEKDYGISRGIDFQNVACVLNFDLPTSSKSY 412
Query: 401 VHRIGRTGRAYNTGASVSLVSP-DEMKIFEEIK-SFVGDDENEDSNIIAPFPLLAQNA-- 456
HRIGRTGR TG ++S V P D+ + S DE + II L
Sbjct: 413 THRIGRTGRGGKTGMALSFVIPADKYGKHKPTSISSAKHDEAVLAKIIKRQAKLGHEVKP 472
Query: 457 -------VESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPXXXXXXX 509
V++ RYR D +++T++A++E+RA+++R E++ SEKLK HFE NP
Sbjct: 473 YHFDMTQVDAFRYRMSDALRAITRLAIQEARAREIRQELVKSEKLKRHFEENPEELRQLR 532
Query: 510 XXXXXXXXPPASHLRDVPDYLLDAKTQEACKMVKLARAAM---GNKNSSRRQGPRRKFRK 566
HL+ +P+YL+ AK ++ + ++ G +N R+ R + R
Sbjct: 533 HDGELRAARIQPHLKHIPEYLMPAKGKKGISNEDVGFVSLRKTGPENRIRKARDRNRGRG 592
Query: 567 SDPLKSFSAEPTKRAGKGR 585
P + +P K +GR
Sbjct: 593 KKPGRKI--DPLKTFNRGR 609
Score = 56 (24.8 bits), Expect = 2.6e-67, Sum P(2) = 2.6e-67
Identities = 46/230 (20%), Positives = 88/230 (38%)
Query: 388 VINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDDENEDSNIIA 447
++N E+P N+ +H + +N G +++ DE ++ KS D E +
Sbjct: 304 ILNSELPVNSR--IHVV----EEFNKGVYDIIIAADEQEVLGVSKSRKSKDATEGDD--- 354
Query: 448 PFPLLAQNAVESLRYRAEDVAKSVTKIAVRE-----SRAQDLRNE--ILN-----SEKLK 495
LL+ E+ A K++ +E SR D +N +LN S K
Sbjct: 355 --ELLSDEDEETSAKAASTRTDKRRKLSSKEKDYGISRGIDFQNVACVLNFDLPTSSKSY 412
Query: 496 AHFEVNPXXXXXXXXXXXXXXXPPASHLRDVPDYLLDAKTQEA--CKMVKLARAAMGNK- 552
H + P + + P + AK EA K++K +A +G++
Sbjct: 413 TH-RIGRTGRGGKTGMALSFVIPADKYGKHKPTSISSAKHDEAVLAKIIK-RQAKLGHEV 470
Query: 553 ---NSSRRQGPRRKFRKSDPLKSFSAEPTKRAGKGRMKREGRNGDDTGKH 599
+ Q ++R SD L++ + + A +++E + +H
Sbjct: 471 KPYHFDMTQVDAFRYRMSDALRAITRLAIQEARAREIRQELVKSEKLKRH 520
>SGD|S000004266 [details] [associations]
symbol:DBP9 "DEAD-box protein required for 27S rRNA
processing" species:4932 "Saccharomyces cerevisiae" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0042254 "ribosome
biogenesis" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA;IDA] [GO:0000463 "maturation
of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA,
LSU-rRNA)" evidence=IMP] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=IDA] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=IDA] [GO:0033680 "ATP-dependent DNA/RNA helicase
activity" evidence=IDA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0006364 "rRNA processing"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 SGD:S000004266 GO:GO:0005524
GO:GO:0005730 EMBL:BK006945 GO:GO:0003723 GO:GO:0004003
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0000463
GO:GO:0004004 GO:GO:0033680 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 EMBL:U17245 KO:K14810 HOGENOM:HOG000253015
OMA:TFLMSAT OrthoDB:EOG4DFSWQ EMBL:AY723847 PIR:S51412
RefSeq:NP_013378.1 ProteinModelPortal:Q06218 SMR:Q06218
DIP:DIP-4771N IntAct:Q06218 MINT:MINT-487200 STRING:Q06218
PaxDb:Q06218 PeptideAtlas:Q06218 EnsemblFungi:YLR276C GeneID:850982
KEGG:sce:YLR276C CYGD:YLR276c GeneTree:ENSGT00550000074946
NextBio:967498 Genevestigator:Q06218 GermOnline:YLR276C
Uniprot:Q06218
Length = 594
Score = 589 (212.4 bits), Expect = 1.6e-92, Sum P(2) = 1.6e-92
Identities = 138/342 (40%), Positives = 198/342 (57%)
Query: 33 LDLRLVHALNKKGIQKPTLIQQASIPLILEGK-DVVARAKTGSGKTFAYLLPLLHRLFNE 91
LD RL+ A+ G Q PTLIQ +IPL L+ K D++A+A TGSGKT AYL+P++ +
Sbjct: 24 LDSRLLQAIKNIGFQYPTLIQSHAIPLALQQKRDIIAKAATGSGKTLAYLIPVIETILEY 83
Query: 92 SSP---KSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRA 148
+ ++LVPTREL QQVY+ + L+ C + + + ++S M S L
Sbjct: 84 KKTIDNGEENGTLGIILVPTRELAQQVYNVLEKLVLYCSKDI--RTLNISSDMSDSVLST 141
Query: 149 ALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAV 208
L P+I++ TPG + L T + S S ++ LK LV+DE DL+L++GY+DDL +
Sbjct: 142 LLMDQPEIIVGTPGKLLDLLQTKI-NSISLNE-LKFLVVDEVDLVLTFGYQDDLNKIGEY 199
Query: 209 IP--RGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKN---VQQFWIS 263
+P + Q LMSAT + D+ LK+ +P IL DE I KN + Q+++
Sbjct: 200 LPLKKNLQTFLMSATLNDDIQALKQKFCRSPAILKF------NDEEINKNQNKLLQYYVK 253
Query: 264 CSERDKXXXXXXXXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRL 323
SE DK ++ K LIF N ID +RLKL +E+FGIKS ILN+ELP NSR
Sbjct: 254 VSEFDKFLLCYVIFKLNLIKGKTLIFVNNIDRGYRLKLVMEQFGIKSCILNSELPVNSRQ 313
Query: 324 HILEEFNAGLFDYLIATDDTQ-TKEKDQSDEGGHVDSRKSKK 364
HI+++FN ++ LIATDDT+ KE+D E GH + +K
Sbjct: 314 HIVDQFNKNVYQLLIATDDTEYIKEEDDEIEEGHNTENQEEK 355
Score = 352 (129.0 bits), Expect = 1.6e-92, Sum P(2) = 1.6e-92
Identities = 91/250 (36%), Positives = 131/250 (52%)
Query: 342 DTQTKEKDQSDEGGHVDSRK--SKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAG 399
+T+ +E ++S EG + +K KK + K D E+GV RG+DFKNV V+NF++P A
Sbjct: 348 NTENQE-EKSLEGEPENDKKPSKKKKVQVKKDKEYGVSRGVDFKNVACVLNFDLPTTAKS 406
Query: 400 YVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDDENEDSNIIA------------ 447
YVHR+GRT R TG ++S V P +K F + K + +D I++
Sbjct: 407 YVHRVGRTARGGKTGTAISFVVP--LKEFGKHKPSMLQTAKKDERILSRIIKQQSKLGLE 464
Query: 448 --PFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPXXX 505
P+ Q VE+ RYR ED ++VT++A+RE+R ++L+ E+L SEKLK HFE NP
Sbjct: 465 LQPYKF-DQKQVEAFRYRMEDGFRAVTQVAIREARVKELKQELLASEKLKRHFEENPKEL 523
Query: 506 XXXXXXXXXXXXPPASHLRDVPDYLLDAKTQEACKMVKLARAAMGNKNSSRRQG--PRRK 563
HL+ VPDYLL + VK K S ++G + K
Sbjct: 524 QSLRHDKELHPARVQQHLKRVPDYLLPESARGNGTKVKFVPFHNAKKRHSHKKGRVSKPK 583
Query: 564 FRKSDPLKSF 573
K DPLK+F
Sbjct: 584 NGKVDPLKNF 593
>MGI|MGI:1277172 [details] [associations]
symbol:Ddx56 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 56"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0006364 "rRNA processing" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0042254 "ribosome
biogenesis" evidence=IEA] InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
MGI:MGI:1277172 GO:GO:0005524 GO:GO:0005730 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K14810 HOGENOM:HOG000253015 OMA:TFLMSAT
GeneTree:ENSGT00550000074946 CTD:54606 HOVERGEN:HBG051334
OrthoDB:EOG47H5PT EMBL:AK011136 EMBL:AK077514 EMBL:BC018291
IPI:IPI00132957 RefSeq:NP_080814.1 UniGene:Mm.29810
ProteinModelPortal:Q9D0R4 SMR:Q9D0R4 STRING:Q9D0R4
PhosphoSite:Q9D0R4 PaxDb:Q9D0R4 PRIDE:Q9D0R4
Ensembl:ENSMUST00000004507 GeneID:52513 KEGG:mmu:52513
InParanoid:Q9D0R4 ChiTaRS:DDX56 NextBio:309069 Bgee:Q9D0R4
CleanEx:MM_DDX56 Genevestigator:Q9D0R4
GermOnline:ENSMUSG00000004393 Uniprot:Q9D0R4
Length = 546
Score = 918 (328.2 bits), Expect = 3.9e-92, P = 3.9e-92
Identities = 219/553 (39%), Positives = 315/553 (56%)
Query: 31 LGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFN 90
+GLD RL+ A+ G +PTLIQ+ +IPL LEGKD++ARA+TGSGKT AY +P+L L +
Sbjct: 12 MGLDPRLLQAVTDLGWSRPTLIQEKAIPLALEGKDLLARARTGSGKTAAYAIPMLQSLLH 71
Query: 91 ESS--PKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRA 148
+ + P + A LVLVPT+EL +Q + + L C V +V ++++ ++ RA
Sbjct: 72 KKATGPVMEQAVRGLVLVPTKELARQAQAMIQQLAAYCARDV--RVANVSAAEDSASQRA 129
Query: 149 ALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAV 208
L PD+V+ TP + L L+ + DSL++LV+DEADLL S+G+ED+LK+L
Sbjct: 130 VLMEKPDVVVGTPSRVLSHLQQNTLKLR---DSLELLVVDEADLLFSFGFEDELKSLLCH 186
Query: 209 IPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISC-SER 267
+PR Q LMSAT + DV LK+L+LHNP L L E + P +QQF + C +E
Sbjct: 187 LPRIYQAFLMSATFNEDVQTLKELVLHNPVTLKLQE-SQLPG---PDQLQQFQVVCETEE 242
Query: 268 DKXXXXXXXXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILE 327
DK ++ KAL+F NT++ +RL+LFLE+F I S +LN ELP SR HI+
Sbjct: 243 DKFLLLYALLKLSLIRGKALLFVNTLERGYRLRLFLEQFSIPSCVLNGELPLRSRCHIIS 302
Query: 328 EFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHT 387
+FN GL+D +IATD + + G R SK + KA D E GV RGIDF +V
Sbjct: 303 QFNQGLYDCVIATDAEILGPQVKGKRRG----RGSKGN-KAS-DPESGVARGIDFHHVSA 356
Query: 388 VINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDDENEDSNIIA 447
V+NF++P A YVHR GRT RA N G ++ V P E +I+ + E E + I+
Sbjct: 357 VLNFDLPPTAEAYVHRAGRTARANNPGIVLTFVLPAEQPFLGKIEDLLSG-EGE-APILL 414
Query: 448 PFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPXXXXX 507
P+ + +ES RYR D +SVTK A+RE+R ++++ E+L+SEKLK +FE NP
Sbjct: 415 PYQFQMEE-IESFRYRCRDAMRSVTKQAIREARLKEIKEELLHSEKLKTYFEDNPRDLQL 473
Query: 508 XXXXXXXXXXPPASHLRDVPDYLLDAKTQEACKMVKLARAAMGNKNSSR--RQGPRRKFR 565
HL VPDYL+ A + K R ++ + + Q P R F+
Sbjct: 474 LRHDLPLHPAVVKPHLGHVPDYLVPAALRGLVHPRKKRRKVPFSRKAKKVKAQNPLRDFK 533
Query: 566 KSDPLKSFSAEPT 578
+A+P+
Sbjct: 534 HRGKKPKPAAKPS 546
>UNIPROTKB|G3V6M5 [details] [associations]
symbol:Ddx56 "Protein Ddx56" species:10116 "Rattus
norvegicus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 RGD:1303195
GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
OMA:TFLMSAT GeneTree:ENSGT00550000074946 EMBL:CH473963
UniGene:Rn.39458 Ensembl:ENSRNOT00000006642 Uniprot:G3V6M5
Length = 546
Score = 917 (327.9 bits), Expect = 5.0e-92, P = 5.0e-92
Identities = 218/555 (39%), Positives = 316/555 (56%)
Query: 31 LGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFN 90
+GLD RL+ A+ G +PTLIQ+ +IPL LEGKD++ARA+TGSGKT AY +P+L L +
Sbjct: 12 MGLDPRLLQAVTDLGWSRPTLIQEKAIPLALEGKDLLARARTGSGKTAAYAIPMLQLLLH 71
Query: 91 ESS--PKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRA 148
+ + P + A LVLVPT+EL +Q S + L C V +V ++++ ++ RA
Sbjct: 72 KKATGPVMEQAVRGLVLVPTKELARQAQSMIQQLASYCARDV--RVANVSAAEDSASQRA 129
Query: 149 ALAGPPDIVIATPGCMPKCLSTGVLQSKSFS--DSLKILVLDEADLLLSYGYEDDLKALS 206
L PD+V+ TP + L+ LQ K+ DSL++LV+DEADLL S+G+ED+LK+L
Sbjct: 130 VLMEKPDVVVGTPS---RILNH--LQQKNLKLRDSLELLVVDEADLLFSFGFEDELKSLL 184
Query: 207 AVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISC-S 265
+PR Q LMSAT + DV LK+L+LHNP L L E + P +QQF + C +
Sbjct: 185 CHLPRIYQAFLMSATFNEDVQTLKELVLHNPVTLKLQE-SQLPG---PDQLQQFQVVCET 240
Query: 266 ERDKXXXXXXXXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHI 325
E DK ++ KAL+F NT++ +RL+LFLE+F I S +LN ELP SR HI
Sbjct: 241 EEDKFLLLYALLKLSLIRGKALLFVNTLERGYRLRLFLEQFSIPSCVLNGELPLRSRCHI 300
Query: 326 LEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNV 385
+ +FN GL+D +IATD + ++ G + K KA D E GV RGIDF +V
Sbjct: 301 ISQFNQGLYDCVIATDAEILGPQVKAKRQG-----RGSKGDKAS-DPESGVARGIDFHHV 354
Query: 386 HTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDDENEDSNI 445
V+NF++P A YVHR GRT RA N G ++ V P E +I+ + + + I
Sbjct: 355 SAVLNFDLPPTAEAYVHRAGRTARANNPGIVLTFVLPTEQSSLGKIEELLSGEGQ--API 412
Query: 446 IAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPXXX 505
+ P+ + +ES RYR D +SVTK A+RE+R ++++ E+L+SEKLK +FE NP
Sbjct: 413 LLPYQFQMEE-IESFRYRCRDAMRSVTKQAIREARLKEIKEELLHSEKLKTYFEDNPRDL 471
Query: 506 XXXXXXXXXXXXPPASHLRDVPDYLLDAKTQEACKMVKLARAAMGNKNSSR--RQGPRRK 563
HL +VPDYL+ A + K R ++ + + Q P R
Sbjct: 472 QLLRHDLPLHPAVVKPHLGNVPDYLVPAALRGLVHPRKKRRKMPFSRKAKKVKTQNPLRD 531
Query: 564 FRKSDPLKSFSAEPT 578
F+ +A+P+
Sbjct: 532 FKHRGKKPKPTAKPS 546
>UNIPROTKB|Q3SZ40 [details] [associations]
symbol:DDX56 "Probable ATP-dependent RNA helicase DDX56"
species:9913 "Bos taurus" [GO:0005730 "nucleolus" evidence=IEA]
[GO:0006364 "rRNA processing" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K14810 HOGENOM:HOG000253015 OMA:TFLMSAT
GeneTree:ENSGT00550000074946 HSSP:P60842 EMBL:BC103169
IPI:IPI00695179 RefSeq:NP_001029501.1 UniGene:Bt.48952
ProteinModelPortal:Q3SZ40 STRING:Q3SZ40 PRIDE:Q3SZ40
Ensembl:ENSBTAT00000014014 GeneID:508728 KEGG:bta:508728 CTD:54606
HOVERGEN:HBG051334 InParanoid:Q3SZ40 OrthoDB:EOG47H5PT
NextBio:20868656 Uniprot:Q3SZ40
Length = 546
Score = 898 (321.2 bits), Expect = 5.1e-90, P = 5.1e-90
Identities = 207/540 (38%), Positives = 308/540 (57%)
Query: 31 LGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFN 90
+GLD RL+ A+ G +PTLIQ+ +IPL LEGKD++ARA+TGSGKT AY +P+L L +
Sbjct: 12 MGLDHRLLQAVTDLGWSRPTLIQEKAIPLALEGKDLLARARTGSGKTAAYAIPMLQLLLH 71
Query: 91 ESS--PKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRA 148
+ P + A ALVLVPT+EL +Q S + L C + +V ++++ ++ RA
Sbjct: 72 RKATGPVVEQAVRALVLVPTKELARQAQSMIQQLAAYCARDI--RVANVSAAEDSASQRA 129
Query: 149 ALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAV 208
L PD+V+ TP + L L+ + DS+++LV+DEADLL S+G+E++LK+L
Sbjct: 130 VLMEKPDVVVGTPSRILNHLQQDNLKLR---DSMELLVVDEADLLFSFGFEEELKSLLCH 186
Query: 209 IPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISC-SER 267
+PR Q LMSAT + DV LK+L+LHNP L L E + P +QQF + C +E
Sbjct: 187 LPRIYQAFLMSATFNEDVQALKELVLHNPVTLKLQE-SQLPG---PDQLQQFQVVCETEE 242
Query: 268 DKXXXXXXXXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILE 327
DK ++ K+L+F NT++ ++RL+LFLE+F I + +LN ELP SR HI+
Sbjct: 243 DKFLLLYALLKLSLIRGKSLLFVNTLERSYRLRLFLEQFSIPACVLNGELPLRSRCHIIS 302
Query: 328 EFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHT 387
+FN G +D +IATD + +G H K K KA D E GV RGIDF +V
Sbjct: 303 QFNQGFYDCVIATD---AEVLGPPVKGKH--RGKGPKRDKAS-DPEAGVARGIDFHHVCA 356
Query: 388 VINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDDENEDSNIIA 447
V+NF++P Y+HR GRT RA N G ++ V P E +I+ + D + ++
Sbjct: 357 VLNFDLPPTPEAYIHRAGRTARANNPGIVLTFVLPTEQSQLGKIEELLSGDSG--APVLL 414
Query: 448 PFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPXXXXX 507
P+ + +E RYR D +SVTK A+RE+R ++++ E+L+SEKLK +FE NP
Sbjct: 415 PYQFHMEE-IEGFRYRCRDAMRSVTKQAIREARLKEIKEELLHSEKLKTYFEDNPRDLQL 473
Query: 508 XXXXXXXXXXPPASHLRDVPDYLLDAKTQEACKMVKLARAAMGNKNS--SRRQGPRRKFR 565
HL +VPDYL+ + K + + +K + ++ Q P R F+
Sbjct: 474 LRHDLPLHPAVVKPHLGNVPDYLVPPALRGLVHPHKKRKKPLASKKAKKAKTQNPLRSFK 533
>UNIPROTKB|Q9NY93 [details] [associations]
symbol:DDX56 "Probable ATP-dependent RNA helicase DDX56"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006364 "rRNA
processing" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=TAS] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0003676 GO:GO:0003723 EMBL:CH236960 EMBL:CH471128
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0004004 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K14810 HOGENOM:HOG000253015 OMA:TFLMSAT
CleanEx:HS_DDX21 CTD:54606 HOVERGEN:HBG051334 OrthoDB:EOG47H5PT
EMBL:AJ131712 EMBL:AF247666 EMBL:AL136700 EMBL:AK022774
EMBL:AK315363 EMBL:CR457213 EMBL:AC004938 EMBL:BC001235
IPI:IPI00302281 IPI:IPI00925037 RefSeq:NP_001244118.1
RefSeq:NP_061955.1 UniGene:Hs.654762 ProteinModelPortal:Q9NY93
SMR:Q9NY93 IntAct:Q9NY93 STRING:Q9NY93 PhosphoSite:Q9NY93
DMDM:20139238 SWISS-2DPAGE:Q9NY93 PaxDb:Q9NY93 PRIDE:Q9NY93
DNASU:54606 Ensembl:ENST00000258772 Ensembl:ENST00000431640
GeneID:54606 KEGG:hsa:54606 UCSC:uc003tlg.3 GeneCards:GC07M044571
HGNC:HGNC:18193 HPA:HPA019749 MIM:608023 neXtProt:NX_Q9NY93
PharmGKB:PA134916346 InParanoid:Q9NY93 PhylomeDB:Q9NY93
GenomeRNAi:54606 NextBio:57133 ArrayExpress:Q9NY93 Bgee:Q9NY93
CleanEx:HS_DDX56 Genevestigator:Q9NY93 GermOnline:ENSG00000136271
Uniprot:Q9NY93
Length = 547
Score = 883 (315.9 bits), Expect = 2.0e-88, P = 2.0e-88
Identities = 212/554 (38%), Positives = 306/554 (55%)
Query: 31 LGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFN 90
+GLD RL+ A+ G +PTLIQ+ +IPL LEGKD++ARA+TGSGKT AY +P+L L +
Sbjct: 12 MGLDPRLLQAVTDLGWSRPTLIQEKAIPLALEGKDLLARARTGSGKTAAYAIPMLQLLLH 71
Query: 91 ESS--PKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRA 148
+ P + A LVLVPT+EL +Q S + L C V +V ++++ + RA
Sbjct: 72 RKATGPVVEQAVRGLVLVPTKELARQAQSMIQQLATYCARDV--RVANVSAAEDSVSQRA 129
Query: 149 ALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAV 208
L PD+V+ TP + LS S DSL++LV+DEADLL S+G+E++LK+L
Sbjct: 130 VLMEKPDVVVGTPS---RILSHLQQDSLKLRDSLELLVVDEADLLFSFGFEEELKSLLCH 186
Query: 209 IPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISC-SER 267
+PR Q LMSAT + DV LK+LILHNP L L E + P +QQF + C +E
Sbjct: 187 LPRIYQAFLMSATFNEDVQALKELILHNPVTLKLQE-SQLPG---PDQLQQFQVVCETEE 242
Query: 268 DKXXXXXXXXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILE 327
DK ++ K+L+F NT++ ++RL+LFLE+F I + +LN ELP SR HI+
Sbjct: 243 DKFLLLYALLKLSLIRGKSLLFVNTLERSYRLRLFLEQFSIPTCVLNGELPLRSRCHIIS 302
Query: 328 EFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHT 387
+FN G +D +IATD + G + K KA D E GV RGIDF +V
Sbjct: 303 QFNQGFYDCVIATDAEVLGAPVKGKRRG-----RGPKGDKAS-DPEAGVARGIDFHHVSA 356
Query: 388 VINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDDENEDSNIIA 447
V+NF++P Y+HR GRT RA N G ++ V P E +I+ + EN I+
Sbjct: 357 VLNFDLPPTPEAYIHRAGRTARANNPGIVLTFVLPTEQFHLGKIEELLSG-ENRGP-ILL 414
Query: 448 PFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPXXXXX 507
P+ + +E RYR D +SVTK A+RE+R ++++ E+L+SEKLK +FE NP
Sbjct: 415 PYQFRMEE-IEGFRYRCRDAMRSVTKQAIREARLKEIKEELLHSEKLKTYFEDNPRDLQL 473
Query: 508 XXXXXXXXXXPPASHLRDVPDYLLDAKTQEACKMVKLARAAMGNKNSSRR---QGPRRKF 564
HL VPDYL+ + + K + + ++R Q P R F
Sbjct: 474 LRHDLPLHPAVVKPHLGHVPDYLVPPALRGLVRPHKKRKKLSSSCRKAKRAKSQNPLRSF 533
Query: 565 RKSDPLKSFSAEPT 578
+ +A+P+
Sbjct: 534 KHKGKKFRPTAKPS 547
>FB|FBgn0001565 [details] [associations]
symbol:Hlc "Helicase" species:7227 "Drosophila melanogaster"
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0022008 "neurogenesis" evidence=IMP]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0022008
EMBL:AE014298 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 EMBL:AF017777 InterPro:IPR014014
PROSITE:PS51195 KO:K14810 GeneTree:ENSGT00550000074946 HSSP:P10081
FlyBase:FBgn0001565 EMBL:AY070624 PIR:T08433 RefSeq:NP_523434.2
UniGene:Dm.2805 SMR:Q9VRI0 STRING:Q9VRI0 EnsemblMetazoa:FBtr0077221
GeneID:33118 KEGG:dme:Dmel_CG1666 UCSC:CG1666-RA CTD:33118
InParanoid:Q9VRI0 OMA:THRIGRA GenomeRNAi:33118 NextBio:781998
Uniprot:Q9VRI0
Length = 560
Score = 848 (303.6 bits), Expect = 1.0e-84, P = 1.0e-84
Identities = 208/566 (36%), Positives = 316/566 (55%)
Query: 31 LGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFN 90
L LD R++ A+ + G Q+PTLIQ +IPL+LEGKDVV RA+TGSGKT Y LPL+ ++ N
Sbjct: 14 LELDQRILKAVAQLGWQQPTLIQSTAIPLLLEGKDVVVRARTGSGKTATYALPLIQKILN 73
Query: 91 ESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLT-SSMPASDLRAA 149
S+ +A+VL PT+ELC+Q + L+E C G+V ++V + SS R A
Sbjct: 74 SKLNASEQYVSAVVLAPTKELCRQSRKVIEQLVESC-GKV-VRVADIADSSNDTVTQRHA 131
Query: 150 LAGPPDIVIATPGCMPKCLSTG-VLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAV 208
L+ PDIV+ATP + G V+ K ++ LV+DEADL+ +YGYE D K L
Sbjct: 132 LSESPDIVVATPANLLAYAEAGSVVDLKH----VETLVVDEADLVFAYGYEKDFKRLIKH 187
Query: 209 IPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKN-VQQFWISCSER 267
+P Q +L+SAT + DV ++K L L+NP L L E E++P++ + I E
Sbjct: 188 LPPIYQAVLVSATLTDDVVRMKGLCLNNPVTLKLEE-----PELVPQDQLSHQRILAEEN 242
Query: 268 DKXXXXXXXXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILE 327
DK ++ K++IF N+ID ++++LFLE+FGI++ +LN+ELP N R+H +
Sbjct: 243 DKPAILYALLKLRLIRGKSIIFVNSIDRCYKVRLFLEQFGIRACVLNSELPANIRIHTIS 302
Query: 328 EFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHT 387
+FN G +D +IA+D+ EK GG S ++K P++ D E RGIDF+ V+
Sbjct: 303 QFNKGTYDIIIASDEHHM-EKP----GGK--SATNRKSPRSG-DMESSASRGIDFQCVNN 354
Query: 388 VINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDD--ENEDSNI 445
VINF+ P++ Y+HR GRT R N G+ +S VS E K+ + ++ + D E I
Sbjct: 355 VINFDFPRDVTSYIHRAGRTARGNNKGSVLSFVSMKESKVNDSVEKKLCDSFAAQEGEQI 414
Query: 446 IAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPXXX 505
I + + VES RYRA+D ++ T++AV ++R ++++ EILN EKLKA FE N
Sbjct: 415 IKNYQFKMEE-VESFRYRAQDCWRAATRVAVHDTRIREIKIEILNCEKLKAFFEENKRDL 473
Query: 506 XXXXXXXXXXXXPPASHLRDVPDYLLDAKTQEACKMVKLARAAMGNKNSSRRQGPRRKFR 565
SHL D+P+Y++ K + + R+ + F
Sbjct: 474 QALRHDKPLRAIKVQSHLSDMPEYIVP-KALKRVVGTSSSPVGASEAKQPRQSAAKAAFE 532
Query: 566 K--SDPLKSFSAEPTKRAGKGRMKRE 589
+ +DPL + + KR R K++
Sbjct: 533 RQVNDPLMASQVDFGKRRPAHRRKKK 558
>UNIPROTKB|F1SSH6 [details] [associations]
symbol:DDX56 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005730 "nucleolus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005730 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
OMA:TFLMSAT GeneTree:ENSGT00550000074946 EMBL:CU856650
Ensembl:ENSSSCT00000018227 Uniprot:F1SSH6
Length = 545
Score = 847 (303.2 bits), Expect = 1.3e-84, P = 1.3e-84
Identities = 204/553 (36%), Positives = 302/553 (54%)
Query: 31 LGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFN 90
+GLD RL+ A+ G +PTLIQ+ IPL LEGKD A G GKT AY +P+L L +
Sbjct: 12 MGLDPRLLQAVTDLGWSRPTLIQE-KIPLALEGKDSWLGAARGQGKTAAYAIPMLQLLLH 70
Query: 91 ESS--PKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRA 148
+ P + A LVLVPT++L +Q S + L C + +V ++++ ++ RA
Sbjct: 71 RKAIGPAVEQAVRGLVLVPTKDLARQAQSMIQQLAAYCARDI--RVANVSAAEDSASQRA 128
Query: 149 ALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAV 208
L PDIV+ TP + L L+ + DSL++LV+DEADLL S+G+E++LK+L
Sbjct: 129 VLMEKPDIVVGTPSRILNHLQQDNLKLR---DSLELLVVDEADLLFSFGFEEELKSLLCH 185
Query: 209 IPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISC-SER 267
+PR Q LMSAT + DV LK+L+LHNP L L E + P +QQF + C +E
Sbjct: 186 LPRIYQAFLMSATFNEDVQALKELVLHNPVTLKLQE-SQLPG---PDQLQQFQVVCETEE 241
Query: 268 DKXXXXXXXXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILE 327
DK ++ K+L+F NT++ ++RL+LFLE+F I + +LN ELP SR HI+
Sbjct: 242 DKFLLLYALLKLSLIRGKSLLFVNTLERSYRLRLFLEQFSIPACVLNGELPLRSRCHIIS 301
Query: 328 EFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHT 387
+FN GL+D +IATD + +G K K +A D E GV RGIDF +V
Sbjct: 302 QFNQGLYDCVIATD---AEVLGPPVKGKGKQRGKGPKGERAS-DPEAGVARGIDFHHVCA 357
Query: 388 VINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDDENEDSNIIA 447
V+NF++P Y+HR GRT RA N G ++ V P E +I+ + + + +
Sbjct: 358 VLNFDLPPTPEAYIHRAGRTARANNPGIVLTFVLPTEQSHLGKIEELLSGENGAPA--LL 415
Query: 448 PFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPXXXXX 507
P+ + +E RYR D +SVTK A+RE+R ++++ E+L+SEKLK +FE NP
Sbjct: 416 PYQFRMEE-IEGFRYRCRDAMRSVTKQAIREARLKEIKEELLHSEKLKTYFEDNPRDLQL 474
Query: 508 XXXXXXXXXXPPASHLRDVPDYLLDAKTQEACKMVKLARAAMGNKNSSRRQGPRRKFRKS 567
HL +VPDYL+ + + K + + K + +K +
Sbjct: 475 LRHDLPLHPAVVKPHLGNVPDYLVPPALRGLVRPHKKRKKPLSAKKA-------KKVKTQ 527
Query: 568 DPLKSFSAEPTKR 580
+PL+SF KR
Sbjct: 528 NPLRSFKHRGEKR 540
>RGD|1303195 [details] [associations]
symbol:Ddx56 "DEAD (Asp-Glu-Ala-Asp) box helicase 56"
species:10116 "Rattus norvegicus" [GO:0003723 "RNA binding"
evidence=TAS] [GO:0004386 "helicase activity" evidence=TAS]
[GO:0005524 "ATP binding" evidence=TAS] [GO:0005634 "nucleus"
evidence=TAS] [GO:0005730 "nucleolus" evidence=ISO;TAS] [GO:0006364
"rRNA processing" evidence=TAS] [GO:0008026 "ATP-dependent helicase
activity" evidence=TAS] InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 RGD:1303195
GO:GO:0005524 GO:GO:0005730 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
eggNOG:COG0513 KO:K14810 HOGENOM:HOG000253015 CTD:54606
HOVERGEN:HBG051334 OrthoDB:EOG47H5PT UniGene:Rn.39458 EMBL:BC078919
IPI:IPI00949738 RefSeq:NP_001004211.1 STRING:Q6AYT6
Ensembl:ENSRNOT00000065205 GeneID:289780 KEGG:rno:289780
UCSC:RGD:1303195 InParanoid:Q6AYT6 NextBio:630330
Genevestigator:Q6AYT6 Uniprot:Q6AYT6
Length = 482
Score = 760 (272.6 bits), Expect = 2.1e-75, P = 2.1e-75
Identities = 187/500 (37%), Positives = 273/500 (54%)
Query: 84 LLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPA 143
LLH+ + P + A LVLVPT+EL +Q S + L C V +V ++++ +
Sbjct: 5 LLHK--KATGPVMEQAVRGLVLVPTKELARQAQSMIQQLASYCARDV--RVANVSAAEDS 60
Query: 144 SDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS--DSLKILVLDEADLLLSYGYEDD 201
+ RA L PD+V+ TP + L+ LQ K+ DSL++LV+DEADLL S+G+ED+
Sbjct: 61 ASQRAVLMEKPDVVVGTPS---RILNH--LQQKNLKLRDSLELLVVDEADLLFSFGFEDE 115
Query: 202 LKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFW 261
LK+L +PR Q LMSAT + DV LK+L+LHNP L L E + P +QQF
Sbjct: 116 LKSLLCHLPRIYQAFLMSATFNEDVQTLKELVLHNPVTLKLQE-SQLPG---PDQLQQFQ 171
Query: 262 ISC-SERDKXXXXXXXXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQN 320
+ C +E DK ++ KAL+F NT++ +RL+LFLE+F I S +LN ELP
Sbjct: 172 VVCETEEDKFLLLYALLKLSLIRGKALLFVNTLERGYRLRLFLEQFSIPSCVLNGELPLR 231
Query: 321 SRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGI 380
SR HI+ +FN GL+D +IATD + ++ G + K KA D E GV RGI
Sbjct: 232 SRCHIISQFNQGLYDCVIATDAEILGPQVKAKRQG-----RGSKGDKAS-DPESGVARGI 285
Query: 381 DFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDDEN 440
DF +V V+NF++P A YVHR GRT RA N G ++ V P E +I+ + +
Sbjct: 286 DFHHVSAVLNFDLPPTAEAYVHRAGRTARANNPGIVLTFVLPTEQSSLGKIEELLSGEGQ 345
Query: 441 EDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEV 500
+ I+ P+ + +ES RYR D +SVTK A+RE+R ++++ E+L+SEKLK +FE
Sbjct: 346 --APILLPYQFQMEE-IESFRYRCRDAMRSVTKQAIREARLKEIKEELLHSEKLKTYFED 402
Query: 501 NPXXXXXXXXXXXXXXXPPASHLRDVPDYLLDAKTQEACKMVKLARAAMGNKNSSR--RQ 558
NP HL +VPDYL+ A + K R ++ + + Q
Sbjct: 403 NPRDLQLLRHDLPLHPAVVKPHLGNVPDYLVPAALRGLVHPRKKRRKMPFSRKAKKVKTQ 462
Query: 559 GPRRKFRKSDPLKSFSAEPT 578
P R F+ +A+P+
Sbjct: 463 NPLRDFKHRGKKPKPTAKPS 482
>CGD|CAL0004220 [details] [associations]
symbol:orf19.3393 species:5476 "Candida albicans" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0000463 "maturation of LSU-rRNA from tricistronic rRNA
transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA]
[GO:0033680 "ATP-dependent DNA/RNA helicase activity" evidence=IEA]
[GO:0004003 "ATP-dependent DNA helicase activity" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 CGD:CAL0004220
GO:GO:0005524 GO:GO:0005730 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:AL033391 EMBL:AACQ01000064
EMBL:AACQ01000065 GO:GO:0006364 GO:GO:0004004 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 RefSeq:XP_716643.1
RefSeq:XP_716703.1 ProteinModelPortal:Q5A4P9 STRING:Q5A4P9
GeneID:3641598 GeneID:3641657 KEGG:cal:CaO19.10896
KEGG:cal:CaO19.3393 KO:K14810 Uniprot:Q5A4P9
Length = 574
Score = 716 (257.1 bits), Expect = 9.9e-71, P = 9.9e-71
Identities = 165/403 (40%), Positives = 238/403 (59%)
Query: 33 LDLRLVHALNKKGIQKPTLIQQASIPLILEGK-DVVARAKTGSGKTFAYLLPLLHRLFNE 91
LD RL+ A+++ G PTLIQ ++IPL LE K D++A+A TGSGKT AY +P+++ L +
Sbjct: 21 LDPRLLQAIDQLGFSNPTLIQSSAIPLALEEKRDIIAKASTGSGKTAAYCIPIVNNLLTD 80
Query: 92 SSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAALA 151
S + +++LVPTREL QV+ V L+ ++ V+ L+SS L + L
Sbjct: 81 DSAQGI---KSIILVPTRELSNQVFQFVEKLLTFSTNKIN--VLNLSSSYSDQVLNSLLV 135
Query: 152 GPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIP- 210
P+I+I+TP + + L + ++K L +DE DL+LS+GY DDLK L + +P
Sbjct: 136 NKPEIIISTPAKLIQILEKN--EKNIDLSTVKNLTIDEVDLVLSFGYLDDLKKLESYLPV 193
Query: 211 -RGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDK 269
+ Q LMSAT + D+D LK+ P IL L E D N+ Q++ +E DK
Sbjct: 194 KKNLQTFLMSATVNDDLDDLKQRYCTKPAILKLNE-----DSANQNNLVQYYAKTTEFDK 248
Query: 270 XXXXXXXXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEF 329
++ K + F N ID +RLKLFLE+FGI+ ILN+ELP NSRLHI+EEF
Sbjct: 249 FLLAYVIFKLNLIKGKTIAFVNNIDRGYRLKLFLEQFGIRCCILNSELPINSRLHIVEEF 308
Query: 330 NAGLFDYLIATDDTQTKEKDQSD-EGGHVDSR-------KSKKHPKAKL--DSEFGVVRG 379
N ++ LIATD+T ++Q D E G D++ K KK K+K D E+GV RG
Sbjct: 309 NKNVYHLLIATDETNELNEEQDDNEDGDEDTKDKGNAETKPKKSKKSKFKQDKEYGVSRG 368
Query: 380 IDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSP 422
+DF+NV V+NF++P ++ Y+HRIGRT RA G ++S V P
Sbjct: 369 VDFRNVACVLNFDLPTSSKAYIHRIGRTARAGKAGMALSFVLP 411
Score = 361 (132.1 bits), Expect = 6.9e-31, P = 6.9e-31
Identities = 87/245 (35%), Positives = 128/245 (52%)
Query: 341 DDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGY 400
DD + ++D D+G K K K K D E+GV RG+DF+NV V+NF++P ++ Y
Sbjct: 330 DDNEDGDEDTKDKGNAETKPKKSKKSKFKQDKEYGVSRGVDFRNVACVLNFDLPTSSKAY 389
Query: 401 VHRIGRTGRAYNTGASVSLVSP-DEM-----------KIFEEIKSFVGDDENEDSNIIAP 448
+HRIGRT RA G ++S V P E K E++ + ++++ I P
Sbjct: 390 IHRIGRTARAGKAGMALSFVLPLSEFGKHKTASLASAKKDEKVLGRIVKQQSKNGFEIKP 449
Query: 449 FPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPXXXXXX 508
+ VE RYRA+D ++VT+ AVRE+R ++L+NE++NSEKLK FE NP
Sbjct: 450 YQF-DMKQVEGFRYRADDAFRAVTQTAVREARVKELKNELINSEKLKRFFEENPQDLASL 508
Query: 509 XXXXXXXXXPPASHLRDVPDYLLDAKTQEACKMVKLARAAMGNKNSSRRQGPRRKFRKSD 568
S L++VP YLL ++ K + NK R+G + +K D
Sbjct: 509 RHDKELHPARIQSQLKNVPQYLLPESARQDVKNIGFVPFHK-NKIHKHRKGKGKGRKKVD 567
Query: 569 PLKSF 573
PLKSF
Sbjct: 568 PLKSF 572
>UNIPROTKB|Q5A4P9 [details] [associations]
symbol:DBP9 "ATP-dependent RNA helicase DBP9"
species:237561 "Candida albicans SC5314" [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=ISS] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 CGD:CAL0004220 GO:GO:0005524
GO:GO:0005730 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 EMBL:AL033391 EMBL:AACQ01000064 EMBL:AACQ01000065
GO:GO:0006364 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 RefSeq:XP_716643.1 RefSeq:XP_716703.1
ProteinModelPortal:Q5A4P9 STRING:Q5A4P9 GeneID:3641598
GeneID:3641657 KEGG:cal:CaO19.10896 KEGG:cal:CaO19.3393 KO:K14810
Uniprot:Q5A4P9
Length = 574
Score = 716 (257.1 bits), Expect = 9.9e-71, P = 9.9e-71
Identities = 165/403 (40%), Positives = 238/403 (59%)
Query: 33 LDLRLVHALNKKGIQKPTLIQQASIPLILEGK-DVVARAKTGSGKTFAYLLPLLHRLFNE 91
LD RL+ A+++ G PTLIQ ++IPL LE K D++A+A TGSGKT AY +P+++ L +
Sbjct: 21 LDPRLLQAIDQLGFSNPTLIQSSAIPLALEEKRDIIAKASTGSGKTAAYCIPIVNNLLTD 80
Query: 92 SSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAALA 151
S + +++LVPTREL QV+ V L+ ++ V+ L+SS L + L
Sbjct: 81 DSAQGI---KSIILVPTRELSNQVFQFVEKLLTFSTNKIN--VLNLSSSYSDQVLNSLLV 135
Query: 152 GPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIP- 210
P+I+I+TP + + L + ++K L +DE DL+LS+GY DDLK L + +P
Sbjct: 136 NKPEIIISTPAKLIQILEKN--EKNIDLSTVKNLTIDEVDLVLSFGYLDDLKKLESYLPV 193
Query: 211 -RGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDK 269
+ Q LMSAT + D+D LK+ P IL L E D N+ Q++ +E DK
Sbjct: 194 KKNLQTFLMSATVNDDLDDLKQRYCTKPAILKLNE-----DSANQNNLVQYYAKTTEFDK 248
Query: 270 XXXXXXXXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEF 329
++ K + F N ID +RLKLFLE+FGI+ ILN+ELP NSRLHI+EEF
Sbjct: 249 FLLAYVIFKLNLIKGKTIAFVNNIDRGYRLKLFLEQFGIRCCILNSELPINSRLHIVEEF 308
Query: 330 NAGLFDYLIATDDTQTKEKDQSD-EGGHVDSR-------KSKKHPKAKL--DSEFGVVRG 379
N ++ LIATD+T ++Q D E G D++ K KK K+K D E+GV RG
Sbjct: 309 NKNVYHLLIATDETNELNEEQDDNEDGDEDTKDKGNAETKPKKSKKSKFKQDKEYGVSRG 368
Query: 380 IDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSP 422
+DF+NV V+NF++P ++ Y+HRIGRT RA G ++S V P
Sbjct: 369 VDFRNVACVLNFDLPTSSKAYIHRIGRTARAGKAGMALSFVLP 411
Score = 361 (132.1 bits), Expect = 6.9e-31, P = 6.9e-31
Identities = 87/245 (35%), Positives = 128/245 (52%)
Query: 341 DDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGY 400
DD + ++D D+G K K K K D E+GV RG+DF+NV V+NF++P ++ Y
Sbjct: 330 DDNEDGDEDTKDKGNAETKPKKSKKSKFKQDKEYGVSRGVDFRNVACVLNFDLPTSSKAY 389
Query: 401 VHRIGRTGRAYNTGASVSLVSP-DEM-----------KIFEEIKSFVGDDENEDSNIIAP 448
+HRIGRT RA G ++S V P E K E++ + ++++ I P
Sbjct: 390 IHRIGRTARAGKAGMALSFVLPLSEFGKHKTASLASAKKDEKVLGRIVKQQSKNGFEIKP 449
Query: 449 FPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPXXXXXX 508
+ VE RYRA+D ++VT+ AVRE+R ++L+NE++NSEKLK FE NP
Sbjct: 450 YQF-DMKQVEGFRYRADDAFRAVTQTAVREARVKELKNELINSEKLKRFFEENPQDLASL 508
Query: 509 XXXXXXXXXPPASHLRDVPDYLLDAKTQEACKMVKLARAAMGNKNSSRRQGPRRKFRKSD 568
S L++VP YLL ++ K + NK R+G + +K D
Sbjct: 509 RHDKELHPARIQSQLKNVPQYLLPESARQDVKNIGFVPFHK-NKIHKHRKGKGKGRKKVD 567
Query: 569 PLKSF 573
PLKSF
Sbjct: 568 PLKSF 572
>WB|WBGene00016073 [details] [associations]
symbol:C24H12.4 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0040007 GO:GO:0002119
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K14810 HOGENOM:HOG000253015 OMA:TFLMSAT
GeneTree:ENSGT00550000074946 HSSP:P10081 EMBL:FO080318 PIR:T32328
RefSeq:NP_740966.1 ProteinModelPortal:O17157 SMR:O17157
STRING:O17157 PaxDb:O17157 PRIDE:O17157 EnsemblMetazoa:C24H12.4a
GeneID:173432 KEGG:cel:CELE_C24H12.4 UCSC:C24H12.4a CTD:173432
WormBase:C24H12.4a InParanoid:O17157 NextBio:879633
ArrayExpress:O17157 Uniprot:O17157
Length = 634
Score = 702 (252.2 bits), Expect = 3.0e-69, P = 3.0e-69
Identities = 174/557 (31%), Positives = 293/557 (52%)
Query: 32 GLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNE 91
GLD R++ ++ + G +K +Q++ I L LE K+++ RA+TGSGKT A+L+PL+ +L E
Sbjct: 95 GLDERILKSIGELGWEKANQVQESVISLALENKNIMGRARTGSGKTGAFLIPLVQKLIAE 154
Query: 92 SSPKS-KLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAAL 150
S + P+A+++ PT+EL Q+Y ++L + L+ + L + + L
Sbjct: 155 SKTNDGSVGPSAVIIAPTKELITQIYK---LFVKLSQALPFLQAINLCD-INEEENSVWL 210
Query: 151 AGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIP 210
+V+ TPG K L L+ + + + LV+DEADLLLS+GYE+++ + + +P
Sbjct: 211 EDRSHVVVTTPG---KLLRMCSLRPE-YCTLVSYLVMDEADLLLSFGYEEEMIKIRSKLP 266
Query: 211 RGCQCLLMSATSSSDVDKLKKLILHNPYI-LTLPEVGDVKDEVIPKNVQQFWISC-SERD 268
QCL+ SAT D+ LKKL + P I + L E GD+ + + Q+ ++C S+ +
Sbjct: 267 PTYQCLMTSATLKDDMTTLKKLFMTGPVITIKLTE-GDLPNS---DQLTQYQLTCGSDEE 322
Query: 269 KXXXXXXXXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEE 328
+ + ++++F NTID ++L L L FG+KS ILN+ +P NSR H++ +
Sbjct: 323 RFAILVAMFKLKLIVGRSILFVNTIDRCYKLMLILRVFGLKSCILNSAMPANSRCHVINQ 382
Query: 329 FNAGLFDYLIATD--DTQ-TKEKDQ----SDEGGHVDSRKSKKHPKAKLDSEFGVVRGID 381
FN G + +IA+D D +K K++ SDE D +K KK +KLD E GV RGID
Sbjct: 383 FNEGSYQIVIASDVSDADGSKLKEEIAGKSDEKPEKDEKKGKK--ASKLDKESGVSRGID 440
Query: 382 FKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDDENE 441
F +V V+NF+ P+ Y+HR+GRT R +N G ++S P E E+I+ + ++
Sbjct: 441 FHHVSNVVNFDFPETTDAYIHRVGRTARGFNKGTALSFCIPSERAHLEQIQEEI--NQQM 498
Query: 442 DSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVN 501
++ P+ + +++ R + TK ++++R +++R E++ S L+ F N
Sbjct: 499 GRKVLQPYEFRIKE-LDTFLLRTREALSKCTKGVIKKARLKEIRQELMRSANLQTFFAKN 557
Query: 502 PXXXXXXXXX---XXXXXXPPASHLRDVPDYLLDAKTQEACKMVKLARAAMGNKNSSRRQ 558
PA + DV Y++ + A+ N RQ
Sbjct: 558 EREKLLMQTDCHPVMLKINSPA--IADVTSYMVPEALRGMDFSAPGAKNRRYNMGQKHRQ 615
Query: 559 GPRRKFRKS--DPLKSF 573
+ KF+K DPLK+F
Sbjct: 616 KLKHKFQKKGKDPLKTF 632
>UNIPROTKB|G3V0G3 [details] [associations]
symbol:DDX56 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 56,
isoform CRA_a" species:9606 "Homo sapiens" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005730 GO:GO:0003676
EMBL:CH471128 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 EMBL:AC004938
UniGene:Hs.654762 HGNC:HGNC:18193 ProteinModelPortal:G3V0G3
SMR:G3V0G3 Ensembl:ENST00000421223 ArrayExpress:G3V0G3 Bgee:G3V0G3
Uniprot:G3V0G3
Length = 375
Score = 697 (250.4 bits), Expect = 1.0e-68, P = 1.0e-68
Identities = 160/379 (42%), Positives = 224/379 (59%)
Query: 31 LGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFN 90
+GLD RL+ A+ G +PTLIQ+ +IPL LEGKD++ARA+TGSGKT AY +P+L L +
Sbjct: 12 MGLDPRLLQAVTDLGWSRPTLIQEKAIPLALEGKDLLARARTGSGKTAAYAIPMLQLLLH 71
Query: 91 ESS--PKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRA 148
+ P + A LVLVPT+EL +Q S + L C V +V ++++ + RA
Sbjct: 72 RKATGPVVEQAVRGLVLVPTKELARQAQSMIQQLATYCARDV--RVANVSAAEDSVSQRA 129
Query: 149 ALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAV 208
L PD+V+ TP + LS S DSL++LV+DEADLL S+G+E++LK+L
Sbjct: 130 VLMEKPDVVVGTPS---RILSHLQQDSLKLRDSLELLVVDEADLLFSFGFEEELKSLLCH 186
Query: 209 IPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISC-SER 267
+PR Q LMSAT + DV LK+LILHNP L L E + P +QQF + C +E
Sbjct: 187 LPRIYQAFLMSATFNEDVQALKELILHNPVTLKLQE-SQLPG---PDQLQQFQVVCETEE 242
Query: 268 DKXXXXXXXXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILE 327
DK ++ K+L+F NT++ ++RL+LFLE+F I + +LN ELP SR HI+
Sbjct: 243 DKFLLLYALLKLSLIRGKSLLFVNTLERSYRLRLFLEQFSIPTCVLNGELPLRSRCHIIS 302
Query: 328 EFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHT 387
+FN G +D +IATD + G + K KA D E GV RGIDF +V
Sbjct: 303 QFNQGFYDCVIATDAEVLGAPVKGKRRG-----RGPKGDKAS-DPEAGVARGIDFHHVSA 356
Query: 388 VINFEMPQNAAGYVHRIGR 406
V+NF++P Y+HR GR
Sbjct: 357 VLNFDLPPTPEAYIHRAGR 375
>UNIPROTKB|J9NSI3 [details] [associations]
symbol:DDX56 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
PROSITE:PS51192 GO:GO:0008026 GeneTree:ENSGT00550000074946
Ensembl:ENSCAFT00000050014 OMA:YGYEDDL Uniprot:J9NSI3
Length = 445
Score = 669 (240.6 bits), Expect = 9.4e-66, P = 9.4e-66
Identities = 163/449 (36%), Positives = 243/449 (54%)
Query: 132 LKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEAD 191
++V ++++ ++ RA L PDIV+ TP + L+ S DSL++LVLDEAD
Sbjct: 13 IRVADVSAAEDSASQRAVLMEKPDIVVGTPS---RILNHLQQDSLVLRDSLELLVLDEAD 69
Query: 192 LLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDE 251
LL S+G+E++LK L +PR Q LMSAT + DV LK+L+LHNP L L E +
Sbjct: 70 LLFSFGFEEELKGLLCHLPRIYQAFLMSATFNEDVQALKELVLHNPVTLKLQE-SQLPG- 127
Query: 252 VIPKNVQQFWISC-SERDKXXXXXXXXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGIKS 310
P ++QF + C +E DK ++ K L+F NT++ ++RL+LFLE+F I +
Sbjct: 128 --PDQLRQFQVVCETEEDKFLLLYALLKLSLIRGKCLLFVNTLERSYRLRLFLEQFSIPA 185
Query: 311 AILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKL 370
+LN ELP SR HI+ +FN G +D +IATD E S G R S+ +A
Sbjct: 186 CVLNGELPLCSRCHIISQFNQGFYDCVIATD----AEVLGSLVKGRRRGRGSRG-TRAS- 239
Query: 371 DSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEE 430
D E GV RGIDF +V +V+NF++P Y+HR GRT RA N G ++ V P E +
Sbjct: 240 DPEAGVARGIDFHHVSSVLNFDLPPTPEAYIHRAGRTARANNPGMVLTFVLPTEQSHLDT 299
Query: 431 IKSFVGDDENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILN 490
I+ + EN + ++ P+ + +E RYR D +SVTK A+RE+R ++++ E+L+
Sbjct: 300 IEELLSG-ENR-APVLLPYQFRMEE-IEGFRYRCRDAMRSVTKQAIREARLKEIKEELLH 356
Query: 491 SEKLKAHFEVNPXXXXXXXXXXXXXXXPPASHLRDVPDYLLDAKTQEACKMVKLARAAMG 550
SE+LK +FE NP HL VPDYL+ + + K +
Sbjct: 357 SERLKTYFEDNPRDLQLLRHDLPLHPAIVKPHLGHVPDYLVPPALRGLVRPHKKRKKLAS 416
Query: 551 NK-NSSRRQGPRRKFRKSDPLKSFSAEPT 578
K ++ Q P R FR + +A P+
Sbjct: 417 KKVKKAKTQNPLRSFRHRKERRRPTAVPS 445
>POMBASE|SPCC1494.06c [details] [associations]
symbol:SPCC1494.06c "ATP-dependent RNA helicase Dbp9
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISO] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005730 "nucleolus" evidence=ISO;IDA] [GO:0005829 "cytosol"
evidence=IDA] [GO:0006364 "rRNA processing" evidence=ISO]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 PomBase:SPCC1494.06c
GO:GO:0005829 GO:GO:0005524 GO:GO:0005730 EMBL:CU329672
GenomeReviews:CU329672_GR GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 KO:K14810
HOGENOM:HOG000253015 OMA:TFLMSAT OrthoDB:EOG4DFSWQ PIR:T41007
RefSeq:NP_588531.1 ProteinModelPortal:O60080 SMR:O60080
STRING:O60080 EnsemblFungi:SPCC1494.06c.1 GeneID:2538776
KEGG:spo:SPCC1494.06c NextBio:20799959 Uniprot:O60080
Length = 595
Score = 650 (233.9 bits), Expect = 9.7e-64, P = 9.7e-64
Identities = 145/312 (46%), Positives = 197/312 (63%)
Query: 33 LDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNES 92
LD RL A++K +KPT +Q +IPL LEGKD+VA+A+TGSGKT AYL+P+L L +
Sbjct: 21 LDPRLQRAIHKCEFEKPTSVQSETIPLALEGKDLVAQARTGSGKTAAYLIPILELLLKQK 80
Query: 93 S-PKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAALA 151
+++ AL+LVPTREL QQVY+ + L C ++ V SS R L
Sbjct: 81 QIDENQRGIFALLLVPTRELAQQVYNVLEKLTAFCSKHIRFINVATNSSDTVQ--RPLLL 138
Query: 152 GPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPR 211
PDIVIATP +++GVL D LK LV+DEADL+LS+GY +D+K LS +PR
Sbjct: 139 DLPDIVIATPSRCVVHVASGVLPL----DKLKFLVIDEADLMLSFGYNEDMKTLSRSLPR 194
Query: 212 GCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKXX 271
G Q LMSAT S ++ L+KL+ NP+IL VKD+ + Q+ + CSE+DK
Sbjct: 195 GTQSFLMSATLSKNIASLQKLVCRNPFILA------VKDKEASGKLTQYVVKCSEQDKFL 248
Query: 272 XXXXXXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNA 331
++ K LIF N I+ +RLKLFLE+FG+KS +LN+ELP NSRLHILE++N
Sbjct: 249 LAYILLKLRLIKGKILIFVNEINRCYRLKLFLEQFGLKSLVLNSELPVNSRLHILEQYNK 308
Query: 332 GLFDYLIATDDT 343
GL+ +IATD++
Sbjct: 309 GLYQIIIATDES 320
Score = 332 (121.9 bits), Expect = 2.2e-27, P = 2.2e-27
Identities = 101/310 (32%), Positives = 157/310 (50%)
Query: 285 KALIFTNTIDMAFRLKLFLEKF--GIKSAILNAELPQNSRLHILEEFNAGL-F--DYLIA 339
K+L+ + + + RL + LE++ G+ I+ + ++ + +EE + F + +I+
Sbjct: 286 KSLVLNSELPVNSRLHI-LEQYNKGLYQIIIATD--ESGMMGEIEELENNVDFVEEEVIS 342
Query: 340 TDD-TQTKEKDQ-----SDEGGHVDSR-KSKKHPKAKLDSEFGVVRGIDFKNVHTVINFE 392
TD T K KDQ +DE ++ KSKK + K D E+GV RG+DF+NV V+NF+
Sbjct: 343 TDQPTLDKMKDQENADVNDESILAAAKDKSKKKKRVKQDKEYGVARGLDFENVACVLNFD 402
Query: 393 MPQNAAGYVHRIGRTGRAYNTGASVSLVSP-DEMKIFE--EIKSFVGDDEN----EDSNI 445
MP N Y+HRIGRT RA G ++S V P E+ + ++S D+ E I
Sbjct: 403 MPSNTKSYIHRIGRTARAGKPGTAMSFVVPKSEVGKHKPTSLESCKKDESVLRRLEKKQI 462
Query: 446 -IAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPXX 504
+ P+ +N +++ RYR ED ++VT +AV +RA +L+ E+L SEKLK++F NP
Sbjct: 463 SLQPYSF-DKNQIDAFRYRMEDALRAVTTVAVSAARAAELKQELLISEKLKSYFAENPDE 521
Query: 505 XXXXXXXXXXXXX--PPASHLRDVPDYLLDAKTQEACKMVKLARAAMGNKNSSRRQGPRR 562
HLR VP+YLL Q K + N+ +
Sbjct: 522 LLSLTHDTVSSVRLGHTQRHLRHVPEYLLPKGMQAVNKDIGFVPFKKNNRRKVFKSRKNP 581
Query: 563 KFRKSDPLKS 572
K R DPL+S
Sbjct: 582 KHRH-DPLRS 590
>UNIPROTKB|H7C3E9 [details] [associations]
symbol:DDX56 "Probable ATP-dependent RNA helicase DDX56"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
EMBL:AC004938 HGNC:HGNC:18193 ProteinModelPortal:H7C3E9
Ensembl:ENST00000433257 Uniprot:H7C3E9
Length = 396
Score = 650 (233.9 bits), Expect = 9.7e-64, P = 9.7e-64
Identities = 157/400 (39%), Positives = 223/400 (55%)
Query: 67 VARAKTGSGKTFAYLLPLLHRLFNESS--PKSKLAPAALVLVPTRELCQQVYSEVMALIE 124
+ARA+TGSGKT AY +P+L L + + P + A LVLVPT+EL +Q S + L
Sbjct: 2 LARARTGSGKTAAYAIPMLQLLLHRKATGPVVEQAVRGLVLVPTKELARQAQSMIQQLAT 61
Query: 125 LCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKI 184
C V +V ++++ + RA L PD+V+ TP + LS S DSL++
Sbjct: 62 YCARDV--RVANVSAAEDSVSQRAVLMEKPDVVVGTPS---RILSHLQQDSLKLRDSLEL 116
Query: 185 LVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPE 244
LV+DEADLL S+G+E++LK+L +PR Q LMSAT + DV LK+LILHNP L L E
Sbjct: 117 LVVDEADLLFSFGFEEELKSLLCHLPRIYQAFLMSATFNEDVQALKELILHNPVTLKLQE 176
Query: 245 VGDVKDEVIPKNVQQFWISC-SERDKXXXXXXXXXXXXVQKKALIFTNTIDMAFRLKLFL 303
+ P +QQF + C +E DK ++ K+L+F NT++ ++RL+LFL
Sbjct: 177 -SQLPG---PDQLQQFQVVCETEEDKFLLLYALLKLSLIRGKSLLFVNTLERSYRLRLFL 232
Query: 304 EKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSK 363
E+F I + +LN ELP SR HI+ +FN G +D +IATD + G +
Sbjct: 233 EQFSIPTCVLNGELPLRSRCHIISQFNQGFYDCVIATDAEVLGAPVKGKRRG-----RGP 287
Query: 364 KHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPD 423
K KA D E GV RGIDF +V V+NF++P Y+HR GRT RA N G ++ V P
Sbjct: 288 KGDKAS-DPEAGVARGIDFHHVSAVLNFDLPPTPEAYIHRAGRTARANNPGIVLTFVLPT 346
Query: 424 EMKIFEEIKSFVGDDENEDSNIIAPFPLLAQNAVESLRYR 463
E +I+ + EN I+ P+ + +E RYR
Sbjct: 347 EQFHLGKIEELLSG-ENRGP-ILLPYQFRMEE-IEGFRYR 383
>UNIPROTKB|Q8EDC4 [details] [associations]
symbol:SO_2838 "ATP-dependent RNA helicase DEAD box family"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
ProtClustDB:CLSK869483 RefSeq:NP_718410.1 ProteinModelPortal:Q8EDC4
GeneID:1170534 KEGG:son:SO_2838 PATRIC:23525314 OMA:LAGHDIF
Uniprot:Q8EDC4
Length = 449
Score = 401 (146.2 bits), Expect = 1.3e-51, Sum P(2) = 1.3e-51
Identities = 107/311 (34%), Positives = 161/311 (51%)
Query: 33 LDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNES 92
LD RL+ +L GI PT IQ+ ++P+ L GKD++A +KTGSGKT A+LLP L R+ +
Sbjct: 8 LDQRLLQSLKHMGIATPTAIQEQALPIALAGKDLMASSKTGSGKTLAFLLPALQRVISTR 67
Query: 93 SPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAALAG 152
+ SK P L+L+PTREL QVYS++ L+ Q K + + +D ALA
Sbjct: 68 A-LSKRDPRVLILLPTRELAHQVYSQLRLLV----ANTQYKAISVLGGENFNDQAKALAK 122
Query: 153 PPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALS-AVIPR 211
P ++ATPG + L Q F + L++L+LDEAD +L G+ LKA++ A +
Sbjct: 123 EPHFIVATPGRIADHLE----QKNLFLNGLELLILDEADRMLDLGFAPQLKAINEAADHK 178
Query: 212 GCQCLLMSAT-SSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKX 270
Q L+ SAT S+++++ +L NP + +G E +++ Q C D
Sbjct: 179 RRQTLMFSATLDHSEINEIAAALLKNPLHVA---IGTAHAE--HQDISQRIYLCDHLDHK 233
Query: 271 XXXXXXXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFN 330
K+ +IFT T RL L G +A L+ EL Q +R I+++F
Sbjct: 234 EALLSRLLSDESHKQVIIFTATRADTERLAAKLSAQGFATAALSGELKQAARNQIMDQFA 293
Query: 331 AGLFDYLIATD 341
G L+ TD
Sbjct: 294 RGQQQILVTTD 304
Score = 152 (58.6 bits), Expect = 1.3e-51, Sum P(2) = 1.3e-51
Identities = 30/58 (51%), Positives = 41/58 (70%)
Query: 378 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 435
RG+D NV VINF+MP+ A YVHRIGRTGRA G ++SLV P + F++++ F+
Sbjct: 308 RGLDLLNVSLVINFDMPKFAEEYVHRIGRTGRAGAKGDAISLVGPKDWDSFKKVQLFL 365
>TIGR_CMR|SO_2838 [details] [associations]
symbol:SO_2838 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
ProtClustDB:CLSK869483 RefSeq:NP_718410.1 ProteinModelPortal:Q8EDC4
GeneID:1170534 KEGG:son:SO_2838 PATRIC:23525314 OMA:LAGHDIF
Uniprot:Q8EDC4
Length = 449
Score = 401 (146.2 bits), Expect = 1.3e-51, Sum P(2) = 1.3e-51
Identities = 107/311 (34%), Positives = 161/311 (51%)
Query: 33 LDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNES 92
LD RL+ +L GI PT IQ+ ++P+ L GKD++A +KTGSGKT A+LLP L R+ +
Sbjct: 8 LDQRLLQSLKHMGIATPTAIQEQALPIALAGKDLMASSKTGSGKTLAFLLPALQRVISTR 67
Query: 93 SPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAALAG 152
+ SK P L+L+PTREL QVYS++ L+ Q K + + +D ALA
Sbjct: 68 A-LSKRDPRVLILLPTRELAHQVYSQLRLLV----ANTQYKAISVLGGENFNDQAKALAK 122
Query: 153 PPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALS-AVIPR 211
P ++ATPG + L Q F + L++L+LDEAD +L G+ LKA++ A +
Sbjct: 123 EPHFIVATPGRIADHLE----QKNLFLNGLELLILDEADRMLDLGFAPQLKAINEAADHK 178
Query: 212 GCQCLLMSAT-SSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKX 270
Q L+ SAT S+++++ +L NP + +G E +++ Q C D
Sbjct: 179 RRQTLMFSATLDHSEINEIAAALLKNPLHVA---IGTAHAE--HQDISQRIYLCDHLDHK 233
Query: 271 XXXXXXXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFN 330
K+ +IFT T RL L G +A L+ EL Q +R I+++F
Sbjct: 234 EALLSRLLSDESHKQVIIFTATRADTERLAAKLSAQGFATAALSGELKQAARNQIMDQFA 293
Query: 331 AGLFDYLIATD 341
G L+ TD
Sbjct: 294 RGQQQILVTTD 304
Score = 152 (58.6 bits), Expect = 1.3e-51, Sum P(2) = 1.3e-51
Identities = 30/58 (51%), Positives = 41/58 (70%)
Query: 378 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 435
RG+D NV VINF+MP+ A YVHRIGRTGRA G ++SLV P + F++++ F+
Sbjct: 308 RGLDLLNVSLVINFDMPKFAEEYVHRIGRTGRAGAKGDAISLVGPKDWDSFKKVQLFL 365
>UNIPROTKB|Q48AV0 [details] [associations]
symbol:CPS_0042 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0016070
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 RefSeq:YP_266818.1 ProteinModelPortal:Q48AV0
GeneID:3521124 KEGG:cps:CPS_0042 PATRIC:21463513 OMA:AITESAY
BioCyc:CPSY167879:GI48-153-MONOMER Uniprot:Q48AV0
Length = 420
Score = 375 (137.1 bits), Expect = 4.2e-49, Sum P(2) = 4.2e-49
Identities = 105/309 (33%), Positives = 163/309 (52%)
Query: 33 LDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNES 92
LD L+ A+ + +PT IQ+ SIPLIL DV+ARA+TG+GKT A+ LP+L +L +
Sbjct: 12 LDSTLLKAITESAYDEPTEIQKQSIPLILAKHDVMARAQTGTGKTAAFALPILQQLISVQ 71
Query: 93 SPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAALAG 152
K +L ALVL PTREL QQV+ + + + +++ S+L+ +
Sbjct: 72 PCKPELR--ALVLTPTRELAQQVHKSFCHYGQFTDVTIGIAYGGVSTKKQISELKVGV-- 127
Query: 153 PPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRG 212
DI+IATPG + L T +S S S+ ++ LV DEAD +L G+++++ ++ +P+
Sbjct: 128 --DILIATPGRLLDLLRT---ESVSLSN-IETLVFDEADRMLDMGFKEEIDQITQYLPKT 181
Query: 213 CQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKXXX 272
Q LL SAT + D+ K+ K IL P ++ + E D+V +Q + + D+
Sbjct: 182 KQTLLFSATFADDIYKMSKNILVEPKMVEIDEKNKAADDV-----EQL-VYGVDADRKRE 235
Query: 273 XXXXXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAG 332
K+ L+FT T A L + K G+KS ++ + Q +R L EF G
Sbjct: 236 LTSFLIGSRNWKQVLVFTRTKQCADDLAKEMTKDGVKSLAIHGDKSQGAREKALHEFKEG 295
Query: 333 LFDYLIATD 341
LIATD
Sbjct: 296 KVRALIATD 304
Score = 157 (60.3 bits), Expect = 4.2e-49, Sum P(2) = 4.2e-49
Identities = 32/58 (55%), Positives = 40/58 (68%)
Query: 378 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 435
RGID K + VIN+E+P NA YVHRIGRT RA N+G +VSLVSP E + I+ +
Sbjct: 308 RGIDIKGLSHVINYELPYNAEDYVHRIGRTARAGNSGLAVSLVSPGEEWLLTAIEELL 365
>TIGR_CMR|CPS_0042 [details] [associations]
symbol:CPS_0042 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0016070
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 RefSeq:YP_266818.1 ProteinModelPortal:Q48AV0
GeneID:3521124 KEGG:cps:CPS_0042 PATRIC:21463513 OMA:AITESAY
BioCyc:CPSY167879:GI48-153-MONOMER Uniprot:Q48AV0
Length = 420
Score = 375 (137.1 bits), Expect = 4.2e-49, Sum P(2) = 4.2e-49
Identities = 105/309 (33%), Positives = 163/309 (52%)
Query: 33 LDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNES 92
LD L+ A+ + +PT IQ+ SIPLIL DV+ARA+TG+GKT A+ LP+L +L +
Sbjct: 12 LDSTLLKAITESAYDEPTEIQKQSIPLILAKHDVMARAQTGTGKTAAFALPILQQLISVQ 71
Query: 93 SPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAALAG 152
K +L ALVL PTREL QQV+ + + + +++ S+L+ +
Sbjct: 72 PCKPELR--ALVLTPTRELAQQVHKSFCHYGQFTDVTIGIAYGGVSTKKQISELKVGV-- 127
Query: 153 PPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRG 212
DI+IATPG + L T +S S S+ ++ LV DEAD +L G+++++ ++ +P+
Sbjct: 128 --DILIATPGRLLDLLRT---ESVSLSN-IETLVFDEADRMLDMGFKEEIDQITQYLPKT 181
Query: 213 CQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKXXX 272
Q LL SAT + D+ K+ K IL P ++ + E D+V +Q + + D+
Sbjct: 182 KQTLLFSATFADDIYKMSKNILVEPKMVEIDEKNKAADDV-----EQL-VYGVDADRKRE 235
Query: 273 XXXXXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAG 332
K+ L+FT T A L + K G+KS ++ + Q +R L EF G
Sbjct: 236 LTSFLIGSRNWKQVLVFTRTKQCADDLAKEMTKDGVKSLAIHGDKSQGAREKALHEFKEG 295
Query: 333 LFDYLIATD 341
LIATD
Sbjct: 296 KVRALIATD 304
Score = 157 (60.3 bits), Expect = 4.2e-49, Sum P(2) = 4.2e-49
Identities = 32/58 (55%), Positives = 40/58 (68%)
Query: 378 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 435
RGID K + VIN+E+P NA YVHRIGRT RA N+G +VSLVSP E + I+ +
Sbjct: 308 RGIDIKGLSHVINYELPYNAEDYVHRIGRTARAGNSGLAVSLVSPGEEWLLTAIEELL 365
>UNIPROTKB|Q9KNA4 [details] [associations]
symbol:VC_A0061 "ATP-dependent RNA helicase, DEAD box
family" species:243277 "Vibrio cholerae O1 biovar El Tor str.
N16961" [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISS] [GO:0016070 "RNA metabolic process" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:AE003853
GenomeReviews:AE003853_GR GO:GO:0016070 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 InterPro:IPR014014
PROSITE:PS51195 HSSP:P10081 OMA:PKFIVAT ProtClustDB:CLSK869483
PIR:C82506 RefSeq:NP_232462.1 ProteinModelPortal:Q9KNA4
DNASU:2612119 GeneID:2612119 KEGG:vch:VCA0061 PATRIC:20084709
Uniprot:Q9KNA4
Length = 452
Score = 367 (134.2 bits), Expect = 1.5e-47, Sum P(2) = 1.5e-47
Identities = 104/313 (33%), Positives = 162/313 (51%)
Query: 31 LGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFN 90
LGLD RL+ L ++ T IQQ +IPL + G+D++A +KTGSGKT A++LP+LH+
Sbjct: 10 LGLDNRLLKNLAHYNFKQATEIQQQAIPLTIAGRDLLASSKTGSGKTLAFVLPMLHKSLK 69
Query: 91 ESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAAL 150
+ +K P L+LVPTREL +QVY E+ +++ G + +T +D AL
Sbjct: 70 TKAFSAK-DPRGLILVPTRELAKQVYGELRSML----GGLSYTATLITGGENFNDQVKAL 124
Query: 151 AGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKAL-SAVI 209
A P ++ATPG + L L F + L+ LVLDEAD +L G+ +L+ + +A
Sbjct: 125 ARGPRFIVATPGRLADHLDHRSL----FLEGLETLVLDEADRMLDLGFAKELRRIHNAAK 180
Query: 210 PRGCQCLLMSAT-SSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERD 268
R Q L+ SAT +DV+ + +L+ P + + VG + + I Q F++ C D
Sbjct: 181 HRRRQTLMFSATLDHADVNDMAMELLNEPKRIAIG-VGSEEHKDI---TQHFYL-CDHLD 235
Query: 269 KXXXXXXXXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEE 328
++ +IFT T RL L + +K+ L+ L Q R I+ +
Sbjct: 236 HKEALLDRILADAEYRQVIIFTATRADTDRLTEKLNQNNLKAVALSGNLNQTQRNTIMGQ 295
Query: 329 FNAGLFDYLIATD 341
F +F L+ TD
Sbjct: 296 FERAVFKILVTTD 308
Score = 152 (58.6 bits), Expect = 1.5e-47, Sum P(2) = 1.5e-47
Identities = 28/58 (48%), Positives = 42/58 (72%)
Query: 378 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 435
RG+D V VINF+MP++ YVHR+GRTGRA N G ++SLV P + + F+ +++F+
Sbjct: 312 RGLDIPAVTHVINFDMPKHTEEYVHRVGRTGRAGNKGDAMSLVGPKDWESFKRVEAFL 369
>TIGR_CMR|VC_A0061 [details] [associations]
symbol:VC_A0061 "ATP-dependent RNA helicase, DEAD box
family" species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE003853 GenomeReviews:AE003853_GR GO:GO:0016070
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 OMA:PKFIVAT
ProtClustDB:CLSK869483 PIR:C82506 RefSeq:NP_232462.1
ProteinModelPortal:Q9KNA4 DNASU:2612119 GeneID:2612119
KEGG:vch:VCA0061 PATRIC:20084709 Uniprot:Q9KNA4
Length = 452
Score = 367 (134.2 bits), Expect = 1.5e-47, Sum P(2) = 1.5e-47
Identities = 104/313 (33%), Positives = 162/313 (51%)
Query: 31 LGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFN 90
LGLD RL+ L ++ T IQQ +IPL + G+D++A +KTGSGKT A++LP+LH+
Sbjct: 10 LGLDNRLLKNLAHYNFKQATEIQQQAIPLTIAGRDLLASSKTGSGKTLAFVLPMLHKSLK 69
Query: 91 ESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAAL 150
+ +K P L+LVPTREL +QVY E+ +++ G + +T +D AL
Sbjct: 70 TKAFSAK-DPRGLILVPTRELAKQVYGELRSML----GGLSYTATLITGGENFNDQVKAL 124
Query: 151 AGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKAL-SAVI 209
A P ++ATPG + L L F + L+ LVLDEAD +L G+ +L+ + +A
Sbjct: 125 ARGPRFIVATPGRLADHLDHRSL----FLEGLETLVLDEADRMLDLGFAKELRRIHNAAK 180
Query: 210 PRGCQCLLMSAT-SSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERD 268
R Q L+ SAT +DV+ + +L+ P + + VG + + I Q F++ C D
Sbjct: 181 HRRRQTLMFSATLDHADVNDMAMELLNEPKRIAIG-VGSEEHKDI---TQHFYL-CDHLD 235
Query: 269 KXXXXXXXXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEE 328
++ +IFT T RL L + +K+ L+ L Q R I+ +
Sbjct: 236 HKEALLDRILADAEYRQVIIFTATRADTDRLTEKLNQNNLKAVALSGNLNQTQRNTIMGQ 295
Query: 329 FNAGLFDYLIATD 341
F +F L+ TD
Sbjct: 296 FERAVFKILVTTD 308
Score = 152 (58.6 bits), Expect = 1.5e-47, Sum P(2) = 1.5e-47
Identities = 28/58 (48%), Positives = 42/58 (72%)
Query: 378 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 435
RG+D V VINF+MP++ YVHR+GRTGRA N G ++SLV P + + F+ +++F+
Sbjct: 312 RGLDIPAVTHVINFDMPKHTEEYVHRVGRTGRAGNKGDAMSLVGPKDWESFKRVEAFL 369
>UNIPROTKB|Q83DM8 [details] [associations]
symbol:rhlE "ATP-dependent RNA helicase" species:227377
"Coxiella burnetii RSA 493" [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
EMBL:AE016828 GenomeReviews:AE016828_GR InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927 OMA:HLIKQHN
RefSeq:NP_819700.2 ProteinModelPortal:Q83DM8 GeneID:1208557
KEGG:cbu:CBU_0670 PATRIC:17930019 ProtClustDB:CLSK914228
BioCyc:CBUR227377:GJ7S-666-MONOMER Uniprot:Q83DM8
Length = 420
Score = 354 (129.7 bits), Expect = 1.4e-46, Sum P(2) = 1.4e-46
Identities = 100/314 (31%), Positives = 158/314 (50%)
Query: 31 LGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFN 90
LGL L+ A+ ++G +PT +Q+ +IP+IL+ +DV+ A+TG+GKT + LPLL RLF
Sbjct: 15 LGLSAELLRAIREQGYVEPTPVQRQAIPVILQARDVMVTAQTGTGKTAGFTLPLLQRLFV 74
Query: 91 ESSPKSKLA-PA--ALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLR 147
P + A P AL+L PTREL QV+ V A + + LK + +
Sbjct: 75 SRPPLQRSAKPVIRALILTPTRELAVQVFECVRAYGKY----LPLKATVVHGGVSIKPQI 130
Query: 148 AALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSA 207
L DI++ATPG + ++ GVL ++ VLDEAD +L G+ D++ +
Sbjct: 131 NHLRRGVDILVATPGRLLDLVNQGVLNLSR----VEFFVLDEADRMLDMGFLPDIRRILK 186
Query: 208 VIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSER 267
++P Q LL SAT S ++ +L +LH+P ++ EV + + + +R
Sbjct: 187 LLPESRQNLLFSATFSKEIKELTDKLLHSPALI---EVA--RRNTAAARITHV-VHPVDR 240
Query: 268 DKXXXXXXXXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILE 327
+ ++ L+FT T A RL LE G+ SA ++ Q +R+ L
Sbjct: 241 QRKRELLSFMIGSKNWRQVLVFTRTKHGANRLSQQLESDGLSSAAIHGNKSQAARMRALT 300
Query: 328 EFNAGLFDYLIATD 341
+F G L+ATD
Sbjct: 301 QFKQGKIRVLVATD 314
Score = 158 (60.7 bits), Expect = 1.4e-46, Sum P(2) = 1.4e-46
Identities = 29/58 (50%), Positives = 41/58 (70%)
Query: 378 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 435
RG+D + VINFE+P A YVHR+GRTGRA N G ++SLVS DE+++ +I+ +
Sbjct: 318 RGLDIDKLPHVINFELPDAAKDYVHRVGRTGRASNDGVAISLVSGDEVRLLRDIEKLL 375
>TIGR_CMR|CBU_0670 [details] [associations]
symbol:CBU_0670 "ATP-dependent RNA helicase RhlE,
putative" species:227377 "Coxiella burnetii RSA 493" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE016828 GenomeReviews:AE016828_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927
OMA:HLIKQHN RefSeq:NP_819700.2 ProteinModelPortal:Q83DM8
GeneID:1208557 KEGG:cbu:CBU_0670 PATRIC:17930019
ProtClustDB:CLSK914228 BioCyc:CBUR227377:GJ7S-666-MONOMER
Uniprot:Q83DM8
Length = 420
Score = 354 (129.7 bits), Expect = 1.4e-46, Sum P(2) = 1.4e-46
Identities = 100/314 (31%), Positives = 158/314 (50%)
Query: 31 LGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFN 90
LGL L+ A+ ++G +PT +Q+ +IP+IL+ +DV+ A+TG+GKT + LPLL RLF
Sbjct: 15 LGLSAELLRAIREQGYVEPTPVQRQAIPVILQARDVMVTAQTGTGKTAGFTLPLLQRLFV 74
Query: 91 ESSPKSKLA-PA--ALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLR 147
P + A P AL+L PTREL QV+ V A + + LK + +
Sbjct: 75 SRPPLQRSAKPVIRALILTPTRELAVQVFECVRAYGKY----LPLKATVVHGGVSIKPQI 130
Query: 148 AALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSA 207
L DI++ATPG + ++ GVL ++ VLDEAD +L G+ D++ +
Sbjct: 131 NHLRRGVDILVATPGRLLDLVNQGVLNLSR----VEFFVLDEADRMLDMGFLPDIRRILK 186
Query: 208 VIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSER 267
++P Q LL SAT S ++ +L +LH+P ++ EV + + + +R
Sbjct: 187 LLPESRQNLLFSATFSKEIKELTDKLLHSPALI---EVA--RRNTAAARITHV-VHPVDR 240
Query: 268 DKXXXXXXXXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILE 327
+ ++ L+FT T A RL LE G+ SA ++ Q +R+ L
Sbjct: 241 QRKRELLSFMIGSKNWRQVLVFTRTKHGANRLSQQLESDGLSSAAIHGNKSQAARMRALT 300
Query: 328 EFNAGLFDYLIATD 341
+F G L+ATD
Sbjct: 301 QFKQGKIRVLVATD 314
Score = 158 (60.7 bits), Expect = 1.4e-46, Sum P(2) = 1.4e-46
Identities = 29/58 (50%), Positives = 41/58 (70%)
Query: 378 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 435
RG+D + VINFE+P A YVHR+GRTGRA N G ++SLVS DE+++ +I+ +
Sbjct: 318 RGLDIDKLPHVINFELPDAAKDYVHRVGRTGRASNDGVAISLVSGDEVRLLRDIEKLL 375
>UNIPROTKB|Q8ECL2 [details] [associations]
symbol:SO_3125 "ATP-dependent RNA helicase DEAD box family"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
ProtClustDB:CLSK907013 RefSeq:NP_718686.1 ProteinModelPortal:Q8ECL2
GeneID:1170814 KEGG:son:SO_3125 PATRIC:23525896 OMA:AHLIKQH
Uniprot:Q8ECL2
Length = 427
Score = 375 (137.1 bits), Expect = 1.8e-46, Sum P(2) = 1.8e-46
Identities = 108/314 (34%), Positives = 156/314 (49%)
Query: 31 LGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFN 90
LG+ L + L + G PT +Q A+IP +L G+DV+A A TGSGKT A+ LPLL RL
Sbjct: 14 LGIIAPLGNRLTELGYVSPTPVQAATIPAVLSGRDVLAGANTGSGKTAAFALPLLQRLSE 73
Query: 91 -ESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAA 149
+S+ KS LVLVPTREL QQV ++ GQ LK+V + + +
Sbjct: 74 AKSADKSAGVVRCLVLVPTRELAQQVADSFLSYASHFNGQ--LKIVAAFGGVSVNLQMQS 131
Query: 150 LAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVI 209
L D+++ATPG + L++ L+ S VLDEAD +LS G+ ++L+ + A +
Sbjct: 132 LRAGADVLVATPGRLLDLLASNALKLTQVS----AFVLDEADRMLSLGFTEELEQVLAAL 187
Query: 210 PRGCQCLLMSATSSSDVDKLKKLILHNP--YILTLPEVGDVKDEVIPKNVQQFWISCSER 267
PR Q LL SAT +V L +LH P Y L + ++ VI N R
Sbjct: 188 PRQKQTLLFSATFPEEVRALTTKLLHQPLEYHLQSEQESTIEQRVITVN----------R 237
Query: 268 DKXXXXXXXXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILE 327
++ +ALIF + + L L K GI + + + + Q +R +L+
Sbjct: 238 EQKTALLAHLIKQHQWSQALIFVSAKNTCNHLAQKLSKRGISAEVFHGDKAQGARTRVLD 297
Query: 328 EFNAGLFDYLIATD 341
F G LIATD
Sbjct: 298 GFKNGEISVLIATD 311
Score = 132 (51.5 bits), Expect = 1.8e-46, Sum P(2) = 1.8e-46
Identities = 26/55 (47%), Positives = 38/55 (69%)
Query: 378 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIK 432
RGID + VINF++P++ A Y+HRIGR+GRA G +V+L+S +E F I+
Sbjct: 315 RGIDIDKLPVVINFDLPRSPADYMHRIGRSGRAGEAGLAVTLISHEEYHHFGVIE 369
>TIGR_CMR|SO_3125 [details] [associations]
symbol:SO_3125 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
ProtClustDB:CLSK907013 RefSeq:NP_718686.1 ProteinModelPortal:Q8ECL2
GeneID:1170814 KEGG:son:SO_3125 PATRIC:23525896 OMA:AHLIKQH
Uniprot:Q8ECL2
Length = 427
Score = 375 (137.1 bits), Expect = 1.8e-46, Sum P(2) = 1.8e-46
Identities = 108/314 (34%), Positives = 156/314 (49%)
Query: 31 LGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFN 90
LG+ L + L + G PT +Q A+IP +L G+DV+A A TGSGKT A+ LPLL RL
Sbjct: 14 LGIIAPLGNRLTELGYVSPTPVQAATIPAVLSGRDVLAGANTGSGKTAAFALPLLQRLSE 73
Query: 91 -ESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAA 149
+S+ KS LVLVPTREL QQV ++ GQ LK+V + + +
Sbjct: 74 AKSADKSAGVVRCLVLVPTRELAQQVADSFLSYASHFNGQ--LKIVAAFGGVSVNLQMQS 131
Query: 150 LAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVI 209
L D+++ATPG + L++ L+ S VLDEAD +LS G+ ++L+ + A +
Sbjct: 132 LRAGADVLVATPGRLLDLLASNALKLTQVS----AFVLDEADRMLSLGFTEELEQVLAAL 187
Query: 210 PRGCQCLLMSATSSSDVDKLKKLILHNP--YILTLPEVGDVKDEVIPKNVQQFWISCSER 267
PR Q LL SAT +V L +LH P Y L + ++ VI N R
Sbjct: 188 PRQKQTLLFSATFPEEVRALTTKLLHQPLEYHLQSEQESTIEQRVITVN----------R 237
Query: 268 DKXXXXXXXXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILE 327
++ +ALIF + + L L K GI + + + + Q +R +L+
Sbjct: 238 EQKTALLAHLIKQHQWSQALIFVSAKNTCNHLAQKLSKRGISAEVFHGDKAQGARTRVLD 297
Query: 328 EFNAGLFDYLIATD 341
F G LIATD
Sbjct: 298 GFKNGEISVLIATD 311
Score = 132 (51.5 bits), Expect = 1.8e-46, Sum P(2) = 1.8e-46
Identities = 26/55 (47%), Positives = 38/55 (69%)
Query: 378 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIK 432
RGID + VINF++P++ A Y+HRIGR+GRA G +V+L+S +E F I+
Sbjct: 315 RGIDIDKLPVVINFDLPRSPADYMHRIGRSGRAGEAGLAVTLISHEEYHHFGVIE 369
>UNIPROTKB|Q9KLH6 [details] [associations]
symbol:VC_A0768 "ATP-dependent RNA helicase, DEAD box
family" species:243277 "Vibrio cholerae O1 biovar El Tor str.
N16961" [GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
[GO:0008152 "metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE003853 GenomeReviews:AE003853_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 KO:K11927
OMA:LECVINY PIR:H82418 RefSeq:NP_233154.1 ProteinModelPortal:Q9KLH6
DNASU:2612338 GeneID:2612338 KEGG:vch:VCA0768 PATRIC:20086092
ProtClustDB:CLSK869757 Uniprot:Q9KLH6
Length = 422
Score = 363 (132.8 bits), Expect = 3.1e-46, Sum P(2) = 3.1e-46
Identities = 113/314 (35%), Positives = 160/314 (50%)
Query: 31 LGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFN 90
LGLD RL++ L++ GI PT IQQ +IP +L+GKDV+A A+TG+GKT A+ LPL+ R
Sbjct: 11 LGLDSRLLNTLSELGIANPTPIQQQAIPHVLQGKDVLAGAQTGTGKTAAFGLPLIQRFIE 70
Query: 91 ESSPKSKLAPA--ALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRA 148
+ + + ALVLVPTREL QQV + A KG +LK+V +
Sbjct: 71 QPWQREANSKEIRALVLVPTRELAQQVLDSLQAY---AKG-TELKIVAVYGGTSMKVQLN 126
Query: 149 ALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDL-KALSA 207
L G DI+IATPG + L ++S F +++LVLDEAD +L G+ DL + L
Sbjct: 127 HLRGGVDILIATPG---RLLDHAHVKSL-FLGKVEVLVLDEADRMLDMGFMPDLQRVLRR 182
Query: 208 VIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSER 267
+ P Q L SAT S + + I+ +P EV + VQQ ++
Sbjct: 183 LSPLR-QTLFFSATFDSKIKAVAYRIMRDPI-----EVQVTPSNSTAETVQQMVYPVDKK 236
Query: 268 DKXXXXXXXXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILE 327
K Q+ L+FT T + L L+ GIK+ +N + Q +R L+
Sbjct: 237 RKRELLSYLIGSKNWQQ-VLVFTKTRQGSDALAEELKLDGIKAVSINGDKSQGARQKALD 295
Query: 328 EFNAGLFDYLIATD 341
+F AG LIATD
Sbjct: 296 DFKAGKVRALIATD 309
Score = 144 (55.7 bits), Expect = 3.1e-46, Sum P(2) = 3.1e-46
Identities = 42/141 (29%), Positives = 68/141 (48%)
Query: 347 EKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGR 406
+K Q +D K+ K +A + ++ RG+D + V+N++MP A YVHRIGR
Sbjct: 284 DKSQGARQKALDDFKAGK-VRALIATDVAA-RGLDIAQLEQVVNYDMPFKAEDYVHRIGR 341
Query: 407 TGRAYNTGASVSLVSPDEMKIFEEIKSFVGDD-ENEDSNIIAPFPLL-AQNAVESLRYRA 464
TGRA G +VSL+S DE E I+ + E P P++ +N+ R+
Sbjct: 342 TGRAGLAGLAVSLLSHDEQPQLEAIERLLNTRLPQEWLKGFEPSPVVHEENSPRRSAGRS 401
Query: 465 EDVAKSVTKIAVRESRAQDLR 485
+ K ++ + R + R
Sbjct: 402 SEKRKLKAQLKIHAQRGKKAR 422
>TIGR_CMR|VC_A0768 [details] [associations]
symbol:VC_A0768 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008152
"metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE003853 GenomeReviews:AE003853_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 KO:K11927
OMA:LECVINY PIR:H82418 RefSeq:NP_233154.1 ProteinModelPortal:Q9KLH6
DNASU:2612338 GeneID:2612338 KEGG:vch:VCA0768 PATRIC:20086092
ProtClustDB:CLSK869757 Uniprot:Q9KLH6
Length = 422
Score = 363 (132.8 bits), Expect = 3.1e-46, Sum P(2) = 3.1e-46
Identities = 113/314 (35%), Positives = 160/314 (50%)
Query: 31 LGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFN 90
LGLD RL++ L++ GI PT IQQ +IP +L+GKDV+A A+TG+GKT A+ LPL+ R
Sbjct: 11 LGLDSRLLNTLSELGIANPTPIQQQAIPHVLQGKDVLAGAQTGTGKTAAFGLPLIQRFIE 70
Query: 91 ESSPKSKLAPA--ALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRA 148
+ + + ALVLVPTREL QQV + A KG +LK+V +
Sbjct: 71 QPWQREANSKEIRALVLVPTRELAQQVLDSLQAY---AKG-TELKIVAVYGGTSMKVQLN 126
Query: 149 ALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDL-KALSA 207
L G DI+IATPG + L ++S F +++LVLDEAD +L G+ DL + L
Sbjct: 127 HLRGGVDILIATPG---RLLDHAHVKSL-FLGKVEVLVLDEADRMLDMGFMPDLQRVLRR 182
Query: 208 VIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSER 267
+ P Q L SAT S + + I+ +P EV + VQQ ++
Sbjct: 183 LSPLR-QTLFFSATFDSKIKAVAYRIMRDPI-----EVQVTPSNSTAETVQQMVYPVDKK 236
Query: 268 DKXXXXXXXXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILE 327
K Q+ L+FT T + L L+ GIK+ +N + Q +R L+
Sbjct: 237 RKRELLSYLIGSKNWQQ-VLVFTKTRQGSDALAEELKLDGIKAVSINGDKSQGARQKALD 295
Query: 328 EFNAGLFDYLIATD 341
+F AG LIATD
Sbjct: 296 DFKAGKVRALIATD 309
Score = 144 (55.7 bits), Expect = 3.1e-46, Sum P(2) = 3.1e-46
Identities = 42/141 (29%), Positives = 68/141 (48%)
Query: 347 EKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGR 406
+K Q +D K+ K +A + ++ RG+D + V+N++MP A YVHRIGR
Sbjct: 284 DKSQGARQKALDDFKAGK-VRALIATDVAA-RGLDIAQLEQVVNYDMPFKAEDYVHRIGR 341
Query: 407 TGRAYNTGASVSLVSPDEMKIFEEIKSFVGDD-ENEDSNIIAPFPLL-AQNAVESLRYRA 464
TGRA G +VSL+S DE E I+ + E P P++ +N+ R+
Sbjct: 342 TGRAGLAGLAVSLLSHDEQPQLEAIERLLNTRLPQEWLKGFEPSPVVHEENSPRRSAGRS 401
Query: 465 EDVAKSVTKIAVRESRAQDLR 485
+ K ++ + R + R
Sbjct: 402 SEKRKLKAQLKIHAQRGKKAR 422
>TIGR_CMR|CPS_1418 [details] [associations]
symbol:CPS_1418 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 OMA:FRNLCAI
HOGENOM:HOG000268807 RefSeq:YP_268161.1 ProteinModelPortal:Q485V4
GeneID:3523021 KEGG:cps:CPS_1418 PATRIC:21466051
BioCyc:CPSY167879:GI48-1499-MONOMER Uniprot:Q485V4
Length = 401
Score = 369 (135.0 bits), Expect = 1.3e-45, Sum P(2) = 1.3e-45
Identities = 105/314 (33%), Positives = 167/314 (53%)
Query: 31 LGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRL-- 88
L L +++A+ G KPT IQQ +IP++L GKD++A A+TG+GKT +++LPLL +L
Sbjct: 6 LKLSTPILNAIADLGYTKPTAIQQKAIPVVLAGKDIIAAAQTGTGKTASFVLPLLEQLNS 65
Query: 89 -FNESSPKSKLAPA-ALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDL 146
+ E+ K + AL+LVPTREL QV + + + K + + + + + A +
Sbjct: 66 QYKETGKKLRAKRIRALILVPTRELAVQVEASIS---QYAK-YLDISSMAMYGGVDAQEQ 121
Query: 147 RAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALS 206
+ L DI++ATPG + VL F D L +LVLDEAD +L G+ DD+ +
Sbjct: 122 KQRLIWGVDILVATPGRLLDMTHQRVLH---F-DELDMLVLDEADRMLDMGFIDDINKII 177
Query: 207 AVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSE 266
+P Q LL SAT S +V L K +H P ++ +G D+ ++Q+ ++ +
Sbjct: 178 ERLPEHRQNLLFSATMSEEVRGLAKRTIHKPVEIS---IG--ADKASKPKIEQWLVTVDK 232
Query: 267 RDKXXXXXXXXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHIL 326
+K Q+ ALIF T A +L LEK GI + +++ Q+ R IL
Sbjct: 233 ANKSALLSHIITTQNWQQ-ALIFIETKHGAAKLVSQLEKRGIVAESIHSGRAQDIREKIL 291
Query: 327 EEFNAGLFDYLIAT 340
+F +G +L+AT
Sbjct: 292 NDFKSGKIKFLVAT 305
Score = 131 (51.2 bits), Expect = 1.3e-45, Sum P(2) = 1.3e-45
Identities = 26/59 (44%), Positives = 38/59 (64%)
Query: 378 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVG 436
RG+D + VIN+++P Y+HRIGRTGRA +G ++SLVS D + I+S +G
Sbjct: 310 RGLDIGELSRVINYDLPAQVDDYIHRIGRTGRAGASGEAISLVSKDNFRELCAIESRLG 368
>UNIPROTKB|Q9KS53 [details] [associations]
symbol:VC1407 "ATP-dependent RNA helicase RhlE"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
[GO:0008152 "metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GenomeReviews:AE003852_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 OMA:FRNLCAI HSSP:P10081 EMBL:AE004219 PIR:D82203
RefSeq:NP_231050.1 ProteinModelPortal:Q9KS53 DNASU:2614039
GeneID:2614039 KEGG:vch:VC1407 PATRIC:20081876
ProtClustDB:CLSK874358 Uniprot:Q9KS53
Length = 397
Score = 363 (132.8 bits), Expect = 4.5e-45, Sum P(2) = 4.5e-45
Identities = 99/310 (31%), Positives = 158/310 (50%)
Query: 31 LGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFN 90
LGL LV + + G QKPT IQ +IP+IL+G+D++A A+TG+GKT +++LP+L +L
Sbjct: 6 LGLSDVLVQTVAQLGYQKPTHIQTQAIPVILQGRDLIAAAQTGTGKTASFVLPILEKL-R 64
Query: 91 ESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAAL 150
+ + K AL+LVPTREL QV +V E LK + + + + L
Sbjct: 65 QGQTQRKKRVRALILVPTRELAMQVAEKV----EQYGKDTGLKSLAVFGGVDEQAQKQRL 120
Query: 151 AGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIP 210
D+++ATPG + Q + + ++++VLDEAD +L G+ + + + +P
Sbjct: 121 IDGVDVLVATPGRLMDLYG----QRAVYFEEIEMVVLDEADRMLDMGFIESINKIIDCLP 176
Query: 211 RGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKX 270
Q LL SAT S V +L K + +P+ E+ ++ N+ Q W+ ++D
Sbjct: 177 SEVQFLLFSATLSRKVRELAKTAVRDPH-----EISIAANQASKSNISQ-WLITVDKDTK 230
Query: 271 XXXXXXXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFN 330
+ALIF T A +L LEK GI + ++ Q R +LE+F
Sbjct: 231 SALLSHLINEQQWDQALIFIETKHGAAKLVSQLEKRGIHAEAFHSGRSQAIRAQLLEDFK 290
Query: 331 AGLFDYLIAT 340
+G YL+AT
Sbjct: 291 SGKIKYLVAT 300
Score = 133 (51.9 bits), Expect = 4.5e-45, Sum P(2) = 4.5e-45
Identities = 33/74 (44%), Positives = 42/74 (56%)
Query: 364 KHPKAKLDSEFGVV-RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSP 422
K K K GV RGID + V+N+++P A YVHRIGRTGRA G ++S VS
Sbjct: 290 KSGKIKYLVATGVAARGIDIDQLSRVVNYDLPFPADEYVHRIGRTGRAEAVGEAISFVSK 349
Query: 423 DEMKIFEEIKSFVG 436
D K I+S +G
Sbjct: 350 DNFKNLCMIESRLG 363
>TIGR_CMR|VC_1407 [details] [associations]
symbol:VC_1407 "ATP-dependent RNA helicase RhlE"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008152
"metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GenomeReviews:AE003852_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 OMA:FRNLCAI HSSP:P10081 EMBL:AE004219 PIR:D82203
RefSeq:NP_231050.1 ProteinModelPortal:Q9KS53 DNASU:2614039
GeneID:2614039 KEGG:vch:VC1407 PATRIC:20081876
ProtClustDB:CLSK874358 Uniprot:Q9KS53
Length = 397
Score = 363 (132.8 bits), Expect = 4.5e-45, Sum P(2) = 4.5e-45
Identities = 99/310 (31%), Positives = 158/310 (50%)
Query: 31 LGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFN 90
LGL LV + + G QKPT IQ +IP+IL+G+D++A A+TG+GKT +++LP+L +L
Sbjct: 6 LGLSDVLVQTVAQLGYQKPTHIQTQAIPVILQGRDLIAAAQTGTGKTASFVLPILEKL-R 64
Query: 91 ESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAAL 150
+ + K AL+LVPTREL QV +V E LK + + + + L
Sbjct: 65 QGQTQRKKRVRALILVPTRELAMQVAEKV----EQYGKDTGLKSLAVFGGVDEQAQKQRL 120
Query: 151 AGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIP 210
D+++ATPG + Q + + ++++VLDEAD +L G+ + + + +P
Sbjct: 121 IDGVDVLVATPGRLMDLYG----QRAVYFEEIEMVVLDEADRMLDMGFIESINKIIDCLP 176
Query: 211 RGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKX 270
Q LL SAT S V +L K + +P+ E+ ++ N+ Q W+ ++D
Sbjct: 177 SEVQFLLFSATLSRKVRELAKTAVRDPH-----EISIAANQASKSNISQ-WLITVDKDTK 230
Query: 271 XXXXXXXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFN 330
+ALIF T A +L LEK GI + ++ Q R +LE+F
Sbjct: 231 SALLSHLINEQQWDQALIFIETKHGAAKLVSQLEKRGIHAEAFHSGRSQAIRAQLLEDFK 290
Query: 331 AGLFDYLIAT 340
+G YL+AT
Sbjct: 291 SGKIKYLVAT 300
Score = 133 (51.9 bits), Expect = 4.5e-45, Sum P(2) = 4.5e-45
Identities = 33/74 (44%), Positives = 42/74 (56%)
Query: 364 KHPKAKLDSEFGVV-RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSP 422
K K K GV RGID + V+N+++P A YVHRIGRTGRA G ++S VS
Sbjct: 290 KSGKIKYLVATGVAARGIDIDQLSRVVNYDLPFPADEYVHRIGRTGRAEAVGEAISFVSK 349
Query: 423 DEMKIFEEIKSFVG 436
D K I+S +G
Sbjct: 350 DNFKNLCMIESRLG 363
>UNIPROTKB|P25888 [details] [associations]
symbol:rhlE "ATP-dependent RNA helicase" species:83333
"Escherichia coli K-12" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0042255 "ribosome assembly" evidence=IGI]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=IDA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:U00096 EMBL:AP009048
GenomeReviews:AP009048_GR GenomeReviews:U00096_GR GO:GO:0003723
GO:GO:0005840 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0042255 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 EMBL:L02123 HOGENOM:HOG000268807 EMBL:X56307
PIR:E64816 RefSeq:NP_415318.1 RefSeq:YP_489070.1
ProteinModelPortal:P25888 SMR:P25888 DIP:DIP-10697N IntAct:P25888
MINT:MINT-1313387 PRIDE:P25888 EnsemblBacteria:EBESCT00000003075
EnsemblBacteria:EBESCT00000017437 GeneID:12930968 GeneID:945425
KEGG:ecj:Y75_p0770 KEGG:eco:b0797 PATRIC:32116795 EchoBASE:EB1217
EcoGene:EG11235 KO:K11927 OMA:HLIKQHN ProtClustDB:PRK10590
BioCyc:EcoCyc:EG11235-MONOMER BioCyc:ECOL316407:JW0781-MONOMER
Genevestigator:P25888 Uniprot:P25888
Length = 454
Score = 355 (130.0 bits), Expect = 6.2e-45, Sum P(2) = 6.2e-45
Identities = 101/312 (32%), Positives = 158/312 (50%)
Query: 31 LGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLL-HRLF 89
LGL ++ A+ ++G ++PT IQQ +IP +LEG+D++A A+TG+GKT + LPLL H +
Sbjct: 6 LGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLIT 65
Query: 90 NESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAA 149
+ K + AL+L PTREL Q+ V + K + ++ + + + +
Sbjct: 66 RQPHAKGRRPVRALILTPTRELAAQIGENVR---DYSK-YLNIRSLVVFGGVSINPQMMK 121
Query: 150 LAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVI 209
L G D+++ATPG + L Q+ D ++ILVLDEAD +L G+ D++ + +
Sbjct: 122 LRGGVDVLVATPG---RLLDLEH-QNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKL 177
Query: 210 PRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDK 269
P Q LL SAT S D+ L + +LHNP + + D+V Q +R +
Sbjct: 178 PAKRQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASDQV----TQHVHFVDKKRKR 233
Query: 270 XXXXXXXXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEF 329
Q L+FT T A L L K GI+SA ++ Q +R L +F
Sbjct: 234 ELLSHMIGKGNWQQ--VLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADF 291
Query: 330 NAGLFDYLIATD 341
+G L+ATD
Sbjct: 292 KSGDIRVLVATD 303
Score = 141 (54.7 bits), Expect = 6.2e-45, Sum P(2) = 6.2e-45
Identities = 27/58 (46%), Positives = 39/58 (67%)
Query: 378 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 435
RG+D + + V+N+E+P YVHRIGRTGRA TG ++SLV DE K+ +I+ +
Sbjct: 307 RGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLL 364
>WB|WBGene00022148 [details] [associations]
symbol:Y71G12B.8 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0040010 "positive regulation of growth rate"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0040007 GO:GO:0040010 GO:GO:0002119 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00550000074997 EMBL:FO080942 RefSeq:NP_490891.2
ProteinModelPortal:Q95XM9 SMR:Q95XM9 PaxDb:Q95XM9
EnsemblMetazoa:Y71G12B.8 GeneID:171743 KEGG:cel:CELE_Y71G12B.8
UCSC:Y71G12B.8 CTD:171743 WormBase:Y71G12B.8 InParanoid:Q95XM9
OMA:ETDREAM NextBio:872509 Uniprot:Q95XM9
Length = 739
Score = 362 (132.5 bits), Expect = 8.1e-45, Sum P(2) = 8.1e-45
Identities = 98/312 (31%), Positives = 150/312 (48%)
Query: 31 LGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFN 90
+ L +++ A + G PT IQQA IP+ L GKD+ A A TG+GKT A++LP+L R+
Sbjct: 153 MNLSRQILKACSGAGYSDPTPIQQACIPVALTGKDICACAATGTGKTAAFVLPILERMIY 212
Query: 91 ESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAAL 150
PK LVLVPTREL QV+ L +QL+V + AAL
Sbjct: 213 R--PKGASCTRVLVLVPTRELAIQVFQVFRKLSTF----IQLEVCLCAGGLDLKAQEAAL 266
Query: 151 AGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLKALSAVI 209
PD+V+ATPG + L S SF+ ++++LVLDEAD +L + D + L +
Sbjct: 267 RSGPDVVVATPGRLIDHLHN----SPSFNLSNIEVLVLDEADRMLEEAFRDQMNELIRLC 322
Query: 210 PRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDK 269
+ Q LL SAT + ++D+L + L P + + E D ++ + ++ I
Sbjct: 323 AQNRQTLLFSATMTEEIDELASMSLQKPVKIFINENTDTALKLRQEFIR---IRAGRETD 379
Query: 270 XXXXXXXXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEF 329
Q ++F T R+++ L GIK + + L Q R+ L +F
Sbjct: 380 REAMVAALVTRTFQTNTIVFVRTKKDCQRMQILLGLLGIKVGQMQSSLTQGQRIESLSKF 439
Query: 330 NAGLFDYLIATD 341
D L++TD
Sbjct: 440 KKAEIDVLVSTD 451
Score = 177 (67.4 bits), Expect = 8.1e-45, Sum P(2) = 8.1e-45
Identities = 48/151 (31%), Positives = 78/151 (51%)
Query: 353 EGGHVDSRKSKKHPKAKLD---SEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGR 409
+G ++S K KA++D S RG+D + V TVIN MP++ Y+HR+GRT R
Sbjct: 429 QGQRIESLS--KFKKAEIDVLVSTDLASRGLDIEGVQTVINMNMPKSIKQYIHRVGRTAR 486
Query: 410 AYNTGASVSLVSPDEMKIFEEIKSFVGDDENEDSNIIAPFPLLAQNAVESLRYRAEDVAK 469
A G S+SLV DE K+ +EI + D ++AP VE+ R R +++ +
Sbjct: 487 AGKAGRSISLVGEDERKLLKEIVNS-NADRTLKQRLVAP------EVVEAYRRRIDELEE 539
Query: 470 SVTKIAVRESRAQDLRNEILNSEKLKAHFEV 500
++ +I + ++LR + K + EV
Sbjct: 540 TIQQIDEEDRAEKELRIAEASMAKTQNALEV 570
>TAIR|locus:2173517 [details] [associations]
symbol:AT5G60990 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0009220
"pyrimidine ribonucleotide biosynthetic process" evidence=RCA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:CP002688 GenomeReviews:BA000015_GR
GO:GO:0003723 EMBL:AB008269 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268802 KO:K14777 OMA:IFIPSKF
EMBL:AK117799 EMBL:BT005375 EMBL:AY088068 EMBL:AJ010462
IPI:IPI00518446 PIR:T51342 RefSeq:NP_568931.1 UniGene:At.20430
ProteinModelPortal:Q8GY84 SMR:Q8GY84 STRING:Q8GY84 PaxDb:Q8GY84
PRIDE:Q8GY84 EnsemblPlants:AT5G60990.1 GeneID:836220
KEGG:ath:AT5G60990 GeneFarm:923 TAIR:At5g60990 InParanoid:Q8GY84
PhylomeDB:Q8GY84 ProtClustDB:CLSN2690059 Genevestigator:Q8GY84
GermOnline:AT5G60990 Uniprot:Q8GY84
Length = 456
Score = 343 (125.8 bits), Expect = 3.1e-44, Sum P(2) = 3.1e-44
Identities = 106/320 (33%), Positives = 157/320 (49%)
Query: 31 LGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFN 90
LG+ LV A + G + P+ IQ ++P LEGKDV+ A+TGSGKT A+ +P+L L
Sbjct: 14 LGVREELVKACERLGWKNPSKIQAEALPFALEGKDVIGLAQTGSGKTGAFAIPILQALLE 73
Query: 91 ---ESSPKS--KLAPA--ALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPA 143
+S PK + PA A VL PTREL Q+ + AL + L+ L +
Sbjct: 74 YVYDSEPKKGRRPDPAFFACVLSPTRELAIQIAEQFEAL----GADISLRCAVLVGGIDR 129
Query: 144 SDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDL 202
AL P +++ATPG + +S +K FS SLK LVLDEAD LL+ +E L
Sbjct: 130 MQQTIALGKRPHVIVATPGRLWDHMS----DTKGFSLKSLKYLVLDEADRLLNEDFEKSL 185
Query: 203 KALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQF-W 261
+ IP + L SAT + V KL++ L NP + E K + QQ+ +
Sbjct: 186 NQILEEIPLERKTFLFSATMTKKVRKLQRACLRNPVKI---EAAS-KYSTVDTLKQQYRF 241
Query: 262 ISCSERDKXXXXXXXXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNS 321
++ +D + ++IFT T D L L L G ++ ++ ++ Q+
Sbjct: 242 VAAKYKD---CYLVYILSEMPESTSMIFTRTCDGTRFLALVLRSLGFRAIPISGQMTQSK 298
Query: 322 RLHILEEFNAGLFDYLIATD 341
RL L +F AG + L+ TD
Sbjct: 299 RLGALNKFKAGECNILVCTD 318
Score = 148 (57.2 bits), Expect = 3.1e-44, Sum P(2) = 3.1e-44
Identities = 36/110 (32%), Positives = 63/110 (57%)
Query: 378 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGD 437
RG+D +V VIN+++P N+ Y+HR+GRT RA +G +SLV+ E++ + +I+ +G
Sbjct: 322 RGLDIPSVDVVINYDIPTNSKDYIHRVGRTARAGRSGVGISLVNQYELEWYIQIEKLIGK 381
Query: 438 DENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNE 487
E +P ++ V SL R + AK ++ + ++ES + R E
Sbjct: 382 KLPE-------YPA-EEDEVLSLLERVAE-AKKLSAMNMKESGGRKRRGE 422
Score = 43 (20.2 bits), Expect = 3.3e-33, Sum P(2) = 3.3e-33
Identities = 7/19 (36%), Positives = 12/19 (63%)
Query: 346 KEKDQSDEGGHVDSRKSKK 364
K++ + GG+ D + SKK
Sbjct: 435 KDRGNKERGGNKDKKSSKK 453
>UNIPROTKB|Q47Z59 [details] [associations]
symbol:CPS_3215 "Putative ATP-dependent RNA helicase SrmB"
species:167879 "Colwellia psychrerythraea 34H" [GO:0042254
"ribosome biogenesis" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GO:GO:0042254 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 RefSeq:YP_269911.1 ProteinModelPortal:Q47Z59
STRING:Q47Z59 GeneID:3520324 KEGG:cps:CPS_3215 PATRIC:21469413
OMA:PKFIVAT ProtClustDB:CLSK869483
BioCyc:CPSY167879:GI48-3264-MONOMER Uniprot:Q47Z59
Length = 448
Score = 342 (125.4 bits), Expect = 8.3e-44, Sum P(2) = 8.3e-44
Identities = 98/312 (31%), Positives = 155/312 (49%)
Query: 32 GLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNE 91
GLD L+ + G +PT IQQ +IP + G D++A +KTGSGKT A+++P L RL ++
Sbjct: 7 GLDSALMSTIEHMGFNEPTQIQQQAIPAAMAGHDLIASSKTGSGKTLAFIIPALQRL-SK 65
Query: 92 SSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAALA 151
+ SK P ++L PTREL +QV+S+ + L Q K V + +D L
Sbjct: 66 NRALSKRDPRVVILTPTRELAKQVFSQ----LRLFTANTQYKAVLILGGENFNDQVKVLQ 121
Query: 152 GPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALS-AVIP 210
P+ ++ATPG + L+ G + L++L+LDEAD +L G+ +L ++ A
Sbjct: 122 KEPEFIVATPGRLADHLTQGHFHL----NGLELLILDEADRMLDLGFSKELTQINKAADH 177
Query: 211 RGCQCLLMSAT-SSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDK 269
R Q LL SAT + V++ +L P + + G + I K +F+++ + K
Sbjct: 178 RKRQTLLFSATLDHAQVNEFATELLTKPKRIAI-NAGHSEHVDIAK---RFYLADNLTQK 233
Query: 270 XXXXXXXXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEF 329
Q+ +IFT T RL L + + + L+ EL Q R I+E F
Sbjct: 234 EALLQHFLVTEKSQQ-IIIFTATRSDTDRLAKLLTEQNLNAVALSGELNQGQRNQIMESF 292
Query: 330 NAGLFDYLIATD 341
+ G L+ TD
Sbjct: 293 SKGQHKILVTTD 304
Score = 145 (56.1 bits), Expect = 8.3e-44, Sum P(2) = 8.3e-44
Identities = 27/58 (46%), Positives = 41/58 (70%)
Query: 378 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 435
RG+D NV VINF+MP++ +VHRIGRTGRA G ++SLV P++ + +++F+
Sbjct: 308 RGLDLINVSHVINFDMPKHTEEFVHRIGRTGRAGTKGDAISLVGPNDWLSLKNVEAFL 365
>TIGR_CMR|CPS_3215 [details] [associations]
symbol:CPS_3215 "putative ATP-dependent RNA helicase SrmB"
species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0008186
"RNA-dependent ATPase activity" evidence=ISS] [GO:0042254 "ribosome
biogenesis" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
GO:GO:0042254 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 RefSeq:YP_269911.1 ProteinModelPortal:Q47Z59
STRING:Q47Z59 GeneID:3520324 KEGG:cps:CPS_3215 PATRIC:21469413
OMA:PKFIVAT ProtClustDB:CLSK869483
BioCyc:CPSY167879:GI48-3264-MONOMER Uniprot:Q47Z59
Length = 448
Score = 342 (125.4 bits), Expect = 8.3e-44, Sum P(2) = 8.3e-44
Identities = 98/312 (31%), Positives = 155/312 (49%)
Query: 32 GLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNE 91
GLD L+ + G +PT IQQ +IP + G D++A +KTGSGKT A+++P L RL ++
Sbjct: 7 GLDSALMSTIEHMGFNEPTQIQQQAIPAAMAGHDLIASSKTGSGKTLAFIIPALQRL-SK 65
Query: 92 SSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAALA 151
+ SK P ++L PTREL +QV+S+ + L Q K V + +D L
Sbjct: 66 NRALSKRDPRVVILTPTRELAKQVFSQ----LRLFTANTQYKAVLILGGENFNDQVKVLQ 121
Query: 152 GPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALS-AVIP 210
P+ ++ATPG + L+ G + L++L+LDEAD +L G+ +L ++ A
Sbjct: 122 KEPEFIVATPGRLADHLTQGHFHL----NGLELLILDEADRMLDLGFSKELTQINKAADH 177
Query: 211 RGCQCLLMSAT-SSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDK 269
R Q LL SAT + V++ +L P + + G + I K +F+++ + K
Sbjct: 178 RKRQTLLFSATLDHAQVNEFATELLTKPKRIAI-NAGHSEHVDIAK---RFYLADNLTQK 233
Query: 270 XXXXXXXXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEF 329
Q+ +IFT T RL L + + + L+ EL Q R I+E F
Sbjct: 234 EALLQHFLVTEKSQQ-IIIFTATRSDTDRLAKLLTEQNLNAVALSGELNQGQRNQIMESF 292
Query: 330 NAGLFDYLIATD 341
+ G L+ TD
Sbjct: 293 SKGQHKILVTTD 304
Score = 145 (56.1 bits), Expect = 8.3e-44, Sum P(2) = 8.3e-44
Identities = 27/58 (46%), Positives = 41/58 (70%)
Query: 378 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 435
RG+D NV VINF+MP++ +VHRIGRTGRA G ++SLV P++ + +++F+
Sbjct: 308 RGLDLINVSHVINFDMPKHTEEFVHRIGRTGRAGTKGDAISLVGPNDWLSLKNVEAFL 365
>UNIPROTKB|Q8EBV7 [details] [associations]
symbol:SO_3388 "ATP-dependent RNA helicase DEAD box family"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
RefSeq:NP_718942.1 ProteinModelPortal:Q8EBV7 GeneID:1171066
KEGG:son:SO_3388 PATRIC:23526456 OMA:SHLVRSK ProtClustDB:CLSK907144
Uniprot:Q8EBV7
Length = 409
Score = 347 (127.2 bits), Expect = 1.2e-43, Sum P(2) = 1.2e-43
Identities = 104/313 (33%), Positives = 156/313 (49%)
Query: 31 LGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLF- 89
L L+ +LV L + G Q+PT IQ +IP IL +DV+A A+TG+GKT A+ LP+L L
Sbjct: 6 LSLNTQLVDTLAELGYQQPTPIQVEAIPAILTKQDVMAGAQTGTGKTAAFALPILQLLMA 65
Query: 90 -NESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRA 148
N+S +K A ALVLVPTREL QV + ++ KG ++V + +A
Sbjct: 66 DNQSDHAAK-AIRALVLVPTRELALQVQQ---SFVKYAKG-TDIRVGIAYGGVSIEAQQA 120
Query: 149 ALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAV 208
D++IATPG + L G L + L LV DEAD +L G+ D+++A+
Sbjct: 121 VFNAGIDVLIATPGRLLDHLRQGALNL----NQLNTLVFDEADRMLDMGFMDEIQAVLKQ 176
Query: 209 IPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERD 268
+P Q LL SAT + K +L +P + EV K ++Q + + D
Sbjct: 177 VPAQRQTLLFSATLDDSIFSFSKNLLRDPKRI---EVA--KPNTTAAQIEQR-VYAIDSD 230
Query: 269 KXXXXXXXXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEE 328
+ ++ LIF+ T +L L K G+ + + +L Q +R +L+E
Sbjct: 231 RKTEFVSHLVRSKNWQQVLIFSRTKQGVDKLTAQLNKLGVATQSFHGDLSQGAREKVLQE 290
Query: 329 FNAGLFDYLIATD 341
F GL L+ATD
Sbjct: 291 FKQGLVQVLVATD 303
Score = 138 (53.6 bits), Expect = 1.2e-43, Sum P(2) = 1.2e-43
Identities = 25/58 (43%), Positives = 40/58 (68%)
Query: 378 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 435
RG+D + VINFE+P A Y+HRIGRTGRA + G +++L S ++ + EE+++ +
Sbjct: 307 RGLDIAELQYVINFELPFIAEDYIHRIGRTGRAGSAGLAITLFSQEDALLLEEVETLL 364
>TIGR_CMR|SO_3388 [details] [associations]
symbol:SO_3388 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
RefSeq:NP_718942.1 ProteinModelPortal:Q8EBV7 GeneID:1171066
KEGG:son:SO_3388 PATRIC:23526456 OMA:SHLVRSK ProtClustDB:CLSK907144
Uniprot:Q8EBV7
Length = 409
Score = 347 (127.2 bits), Expect = 1.2e-43, Sum P(2) = 1.2e-43
Identities = 104/313 (33%), Positives = 156/313 (49%)
Query: 31 LGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLF- 89
L L+ +LV L + G Q+PT IQ +IP IL +DV+A A+TG+GKT A+ LP+L L
Sbjct: 6 LSLNTQLVDTLAELGYQQPTPIQVEAIPAILTKQDVMAGAQTGTGKTAAFALPILQLLMA 65
Query: 90 -NESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRA 148
N+S +K A ALVLVPTREL QV + ++ KG ++V + +A
Sbjct: 66 DNQSDHAAK-AIRALVLVPTRELALQVQQ---SFVKYAKG-TDIRVGIAYGGVSIEAQQA 120
Query: 149 ALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAV 208
D++IATPG + L G L + L LV DEAD +L G+ D+++A+
Sbjct: 121 VFNAGIDVLIATPGRLLDHLRQGALNL----NQLNTLVFDEADRMLDMGFMDEIQAVLKQ 176
Query: 209 IPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERD 268
+P Q LL SAT + K +L +P + EV K ++Q + + D
Sbjct: 177 VPAQRQTLLFSATLDDSIFSFSKNLLRDPKRI---EVA--KPNTTAAQIEQR-VYAIDSD 230
Query: 269 KXXXXXXXXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEE 328
+ ++ LIF+ T +L L K G+ + + +L Q +R +L+E
Sbjct: 231 RKTEFVSHLVRSKNWQQVLIFSRTKQGVDKLTAQLNKLGVATQSFHGDLSQGAREKVLQE 290
Query: 329 FNAGLFDYLIATD 341
F GL L+ATD
Sbjct: 291 FKQGLVQVLVATD 303
Score = 138 (53.6 bits), Expect = 1.2e-43, Sum P(2) = 1.2e-43
Identities = 25/58 (43%), Positives = 40/58 (68%)
Query: 378 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 435
RG+D + VINFE+P A Y+HRIGRTGRA + G +++L S ++ + EE+++ +
Sbjct: 307 RGLDIAELQYVINFELPFIAEDYIHRIGRTGRAGSAGLAITLFSQEDALLLEEVETLL 364
>TIGR_CMR|CPS_3401 [details] [associations]
symbol:CPS_3401 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 RefSeq:YP_270076.1 ProteinModelPortal:Q47YP4
STRING:Q47YP4 GeneID:3521057 KEGG:cps:CPS_3401 PATRIC:21469753
OMA:HLIKEHQ ProtClustDB:CLSK907013
BioCyc:CPSY167879:GI48-3430-MONOMER Uniprot:Q47YP4
Length = 432
Score = 359 (131.4 bits), Expect = 1.3e-43, Sum P(2) = 1.3e-43
Identities = 107/315 (33%), Positives = 162/315 (51%)
Query: 31 LGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFN 90
LGL L+ L + +PT IQ +IP + G+D++A A TGSGKT + LP+L +L
Sbjct: 13 LGLITPLLARLAELEYHQPTPIQARAIPSVFAGRDLIAGANTGSGKTATFALPMLQKLRE 72
Query: 91 ESSPKSKLAPA----ALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDL 146
+ S SK + LVLVPTREL +QV + + G++ K + + + +
Sbjct: 73 DISSGSKNSKGNFVTGLVLVPTRELAKQVADSIKSYAVHFNGEI--KTLAVFGGVSVNIQ 130
Query: 147 RAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALS 206
AL G DI++ATPG + +S+ ++ D +K LVLDEAD +LS G+ ++L AL
Sbjct: 131 MLALRGGVDILVATPGRLLDLISSNAIKL----DKVKTLVLDEADRMLSLGFTEELTALL 186
Query: 207 AVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSE 266
A+ P+ Q LL SAT V L + +L+NP + L + D V + V F ++ E
Sbjct: 187 ALTPKKKQTLLFSATFPEQVTTLTQELLNNPIEIQL-QSADASTLV--QRV--FTVNKGE 241
Query: 267 RDKXXXXXXXXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHIL 326
+ ++ALIF N L L K GI +A+ + + Q+ R +L
Sbjct: 242 K---TAVLAHLIQQEQWRQALIFVNAKHHCEHLAEKLAKRGITAAVFHGDKGQSERSRVL 298
Query: 327 EEFNAGLFDYLIATD 341
+ F AG + LIATD
Sbjct: 299 DGFKAGDIEVLIATD 313
Score = 124 (48.7 bits), Expect = 1.3e-43, Sum P(2) = 1.3e-43
Identities = 22/55 (40%), Positives = 37/55 (67%)
Query: 378 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIK 432
RG+D + + VINF +P++ + Y+HRIGR+GRA G ++SL+ ++ F I+
Sbjct: 317 RGLDIEKLPVVINFNLPRSPSDYMHRIGRSGRAGEVGLAISLIDHEDYHHFSVIE 371
>TIGR_CMR|CPS_1125 [details] [associations]
symbol:CPS_1125 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 KO:K11927 RefSeq:YP_267868.1
ProteinModelPortal:Q486Z7 STRING:Q486Z7 GeneID:3520292
KEGG:cps:CPS_1125 PATRIC:21465509 OMA:AYSKYLR
BioCyc:CPSY167879:GI48-1206-MONOMER Uniprot:Q486Z7
Length = 466
Score = 351 (128.6 bits), Expect = 1.3e-43, Sum P(2) = 1.3e-43
Identities = 100/312 (32%), Positives = 160/312 (51%)
Query: 31 LGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFN 90
LGL L+ A+ KG + P+ IQ +IP ++ G+DV+A A+TG+GKT + LPLL RL +
Sbjct: 11 LGLSEALLKAVRDKGYETPSPIQAQAIPAVISGRDVMAAAQTGTGKTAGFTLPLLQRLSS 70
Query: 91 ESSPK-SKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAA 149
K S AL+L PTREL Q+ SE IE+ + L + + + + A
Sbjct: 71 SKGNKVSSNNVRALILTPTRELAAQI-SES---IEVYGKYLNLHSMVVFGGVKINPQIAR 126
Query: 150 LAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVI 209
L D+++ATPG + L ++ FS L++ +LDEAD +L G+ D+K L +
Sbjct: 127 LRQGVDVLVATPG---RLLDLYNQRAVKFSQ-LEVFILDEADRMLDMGFIRDIKKLMTAL 182
Query: 210 PRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDK 269
P+ Q LL SAT S ++ L K +++NP +++ D ++ K Q W++ ++ +
Sbjct: 183 PKDRQNLLFSATFSPEIRALAKGMVNNPLEISV----DAENSTAEKVTQ--WLTAVDKKR 236
Query: 270 XXXXXXXXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEF 329
++ L+FT T A +L LE G+ +A ++ Q +R L F
Sbjct: 237 KPAVLTHLIKENNWQQVLVFTKTKHGANKLTKHLEAEGLTAAAIHGNKSQGARTKALAAF 296
Query: 330 NAGLFDYLIATD 341
G L+ATD
Sbjct: 297 KDGSVKILVATD 308
Score = 133 (51.9 bits), Expect = 1.3e-43, Sum P(2) = 1.3e-43
Identities = 29/72 (40%), Positives = 43/72 (59%)
Query: 378 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGD 437
RGID + V+NF++P YVHRIGRT RA NTG ++SLV DE+ + I+ +
Sbjct: 312 RGIDIDLLPQVVNFDLPNVPEDYVHRIGRTARAGNTGQALSLVCADELDLLWGIEHVI-- 369
Query: 438 DENEDSNIIAPF 449
++ + +I F
Sbjct: 370 QQHIERKVIEKF 381
>UNIPROTKB|Q8EHT1 [details] [associations]
symbol:SO_1136 "ATP-dependent RNA helicase DEAD box family"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
RefSeq:NP_716761.1 ProteinModelPortal:Q8EHT1 GeneID:1168967
KEGG:son:SO_1136 PATRIC:23521912 OMA:IGAKENA ProtClustDB:CLSK869861
Uniprot:Q8EHT1
Length = 447
Score = 364 (133.2 bits), Expect = 3.4e-43, Sum P(2) = 3.4e-43
Identities = 112/318 (35%), Positives = 163/318 (51%)
Query: 31 LGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFN 90
LGL+ L AL + ++ PT +QQ +IP IL G+D++A ++TGSGKTFA+ LPLL L+
Sbjct: 22 LGLNAALRKALPTR-LKHPTRVQQLAIPAILAGRDLLALSQTGSGKTFAFGLPLLQILWQ 80
Query: 91 E----SSPKSKLA--PAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPAS 144
+ ++ KS A P ALVLVPTREL QV + AL L + L +
Sbjct: 81 QIAVQTTAKSVPAAKPLALVLVPTRELALQVSEALHALASQLSTSAPLNIQLLCGGVALE 140
Query: 145 DLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKA 204
A L+ P +V+ATPG + L T QS D++K LVLDEAD LL G+ D++
Sbjct: 141 QQLADLSAKPQLVVATPGRLLD-LCT---QSHISLDAIKHLVLDEADRLLEMGFWPDMQK 196
Query: 205 LSAVIPRGCQCLLMSATSSSDVDKLK-KLILHNPYILTLPEVGDVKDEVIPKNVQQFWIS 263
L A++P+ Q LL SAT +D L KL+ ++P L ++ V+ + +Q ++
Sbjct: 197 LMAMMPKRKQTLLFSATLPEALDSLAGKLLTNDP----LKVEASTRNAVVGEIEEQLYLV 252
Query: 264 CSERDKXXXXXXXXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRL 323
+ + L+F + D A + L K GI +A L+ E Q R
Sbjct: 253 --NKGSKAQALIALLKQYQWPQVLVFISARDDADAIAKRLVKAGINAAALHGEKDQTVRS 310
Query: 324 HILEEFNAGLFDYLIATD 341
L +F A L+ATD
Sbjct: 311 QTLADFKADRIQVLVATD 328
Score = 114 (45.2 bits), Expect = 3.4e-43, Sum P(2) = 3.4e-43
Identities = 40/121 (33%), Positives = 59/121 (48%)
Query: 376 VVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 435
+ RGI + VIN ++P +A YVHRIGRT RA G ++SLV EM I++
Sbjct: 330 MARGIHVDALPVVINLDLPTSAPVYVHRIGRTARAGAKGLAISLVCHGEMPNLTAIRNLT 389
Query: 436 GDDENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLK 495
+A FP+ + + E + AE+ K + K R+ +A R I N +K
Sbjct: 390 A--RALPLVFLADFPVTDKPS-EKIIDGAEN--KVIPKRPPRDKQAN--RRSI-NKHSVK 441
Query: 496 A 496
A
Sbjct: 442 A 442
>TIGR_CMR|SO_1136 [details] [associations]
symbol:SO_1136 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
RefSeq:NP_716761.1 ProteinModelPortal:Q8EHT1 GeneID:1168967
KEGG:son:SO_1136 PATRIC:23521912 OMA:IGAKENA ProtClustDB:CLSK869861
Uniprot:Q8EHT1
Length = 447
Score = 364 (133.2 bits), Expect = 3.4e-43, Sum P(2) = 3.4e-43
Identities = 112/318 (35%), Positives = 163/318 (51%)
Query: 31 LGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFN 90
LGL+ L AL + ++ PT +QQ +IP IL G+D++A ++TGSGKTFA+ LPLL L+
Sbjct: 22 LGLNAALRKALPTR-LKHPTRVQQLAIPAILAGRDLLALSQTGSGKTFAFGLPLLQILWQ 80
Query: 91 E----SSPKSKLA--PAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPAS 144
+ ++ KS A P ALVLVPTREL QV + AL L + L +
Sbjct: 81 QIAVQTTAKSVPAAKPLALVLVPTRELALQVSEALHALASQLSTSAPLNIQLLCGGVALE 140
Query: 145 DLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKA 204
A L+ P +V+ATPG + L T QS D++K LVLDEAD LL G+ D++
Sbjct: 141 QQLADLSAKPQLVVATPGRLLD-LCT---QSHISLDAIKHLVLDEADRLLEMGFWPDMQK 196
Query: 205 LSAVIPRGCQCLLMSATSSSDVDKLK-KLILHNPYILTLPEVGDVKDEVIPKNVQQFWIS 263
L A++P+ Q LL SAT +D L KL+ ++P L ++ V+ + +Q ++
Sbjct: 197 LMAMMPKRKQTLLFSATLPEALDSLAGKLLTNDP----LKVEASTRNAVVGEIEEQLYLV 252
Query: 264 CSERDKXXXXXXXXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRL 323
+ + L+F + D A + L K GI +A L+ E Q R
Sbjct: 253 --NKGSKAQALIALLKQYQWPQVLVFISARDDADAIAKRLVKAGINAAALHGEKDQTVRS 310
Query: 324 HILEEFNAGLFDYLIATD 341
L +F A L+ATD
Sbjct: 311 QTLADFKADRIQVLVATD 328
Score = 114 (45.2 bits), Expect = 3.4e-43, Sum P(2) = 3.4e-43
Identities = 40/121 (33%), Positives = 59/121 (48%)
Query: 376 VVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 435
+ RGI + VIN ++P +A YVHRIGRT RA G ++SLV EM I++
Sbjct: 330 MARGIHVDALPVVINLDLPTSAPVYVHRIGRTARAGAKGLAISLVCHGEMPNLTAIRNLT 389
Query: 436 GDDENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLK 495
+A FP+ + + E + AE+ K + K R+ +A R I N +K
Sbjct: 390 A--RALPLVFLADFPVTDKPS-EKIIDGAEN--KVIPKRPPRDKQAN--RRSI-NKHSVK 441
Query: 496 A 496
A
Sbjct: 442 A 442
>UNIPROTKB|Q8EI96 [details] [associations]
symbol:srmB "ATP-dependent RNA helicase SrmB"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 OMA:PLAMDQR
HOGENOM:HOG000268807 KO:K05590 ProtClustDB:PRK11192
RefSeq:NP_716576.1 ProteinModelPortal:Q8EI96 GeneID:1168793
KEGG:son:SO_0947 PATRIC:23521551 Uniprot:Q8EI96
Length = 420
Score = 329 (120.9 bits), Expect = 1.7e-42, Sum P(2) = 1.7e-42
Identities = 99/311 (31%), Positives = 155/311 (49%)
Query: 33 LDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNES 92
LD L+ +L G PT IQQ ++P LE +D++ARA TG+GKT ++LLP L L +
Sbjct: 8 LDPSLLESLKAMGHLSPTTIQQETLPHALEQRDILARAPTGTGKTASFLLPALQHLIDFP 67
Query: 93 SPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAALAG 152
S A L+L PTREL Q++ L Q L + +T +P + AL G
Sbjct: 68 RRYSGQA-RVLILTPTRELASQIHRYAC---HLATDQ-GLNIAIITGGVPYAPQEEALKG 122
Query: 153 PPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRG 212
DI++ATPG + + L G K ++S+ IL++DEAD +L G+ +KA++
Sbjct: 123 NIDILVATPGRLMEYLDKG----KFSAESVDILIIDEADRMLDMGFSAVVKAIALEAQGR 178
Query: 213 CQCLLMSAT-SSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSE-RDKX 270
Q +L SAT S V + + +L++P + +V + E + Q WI ++ +D
Sbjct: 179 KQNMLFSATLEGSGVIRFAREVLNDPIEI---DVDAPRKE--KAKIHQ-WIHLADDKDHK 232
Query: 271 XXXXXXXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFN 330
K+A++F T D+ L+ L + GI A + ++ Q R L F
Sbjct: 233 FALLCHLLKQEDVKRAIVFVKTRDVVSSLEGQLLQAGIPCAFMRGDMEQKKRFQALSRFT 292
Query: 331 AGLFDYLIATD 341
G + L+ATD
Sbjct: 293 KGEVNVLLATD 303
Score = 147 (56.8 bits), Expect = 1.7e-42, Sum P(2) = 1.7e-42
Identities = 31/77 (40%), Positives = 48/77 (62%)
Query: 359 SRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVS 418
SR +K L ++ RGID ++ VINF+MP++A Y+HRIGRTGRA G ++S
Sbjct: 289 SRFTKGEVNVLLATDVAA-RGIDIDDISHVINFDMPRSADTYIHRIGRTGRAGAKGTAIS 347
Query: 419 LVSPDEMKIFEEIKSFV 435
L +M+I +I+ ++
Sbjct: 348 LAEAHDMRIVGKIERYI 364
>TIGR_CMR|SO_0947 [details] [associations]
symbol:SO_0947 "ATP-dependent RNA helicase SrmB"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 OMA:PLAMDQR
HOGENOM:HOG000268807 KO:K05590 ProtClustDB:PRK11192
RefSeq:NP_716576.1 ProteinModelPortal:Q8EI96 GeneID:1168793
KEGG:son:SO_0947 PATRIC:23521551 Uniprot:Q8EI96
Length = 420
Score = 329 (120.9 bits), Expect = 1.7e-42, Sum P(2) = 1.7e-42
Identities = 99/311 (31%), Positives = 155/311 (49%)
Query: 33 LDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNES 92
LD L+ +L G PT IQQ ++P LE +D++ARA TG+GKT ++LLP L L +
Sbjct: 8 LDPSLLESLKAMGHLSPTTIQQETLPHALEQRDILARAPTGTGKTASFLLPALQHLIDFP 67
Query: 93 SPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAALAG 152
S A L+L PTREL Q++ L Q L + +T +P + AL G
Sbjct: 68 RRYSGQA-RVLILTPTRELASQIHRYAC---HLATDQ-GLNIAIITGGVPYAPQEEALKG 122
Query: 153 PPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRG 212
DI++ATPG + + L G K ++S+ IL++DEAD +L G+ +KA++
Sbjct: 123 NIDILVATPGRLMEYLDKG----KFSAESVDILIIDEADRMLDMGFSAVVKAIALEAQGR 178
Query: 213 CQCLLMSAT-SSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSE-RDKX 270
Q +L SAT S V + + +L++P + +V + E + Q WI ++ +D
Sbjct: 179 KQNMLFSATLEGSGVIRFAREVLNDPIEI---DVDAPRKE--KAKIHQ-WIHLADDKDHK 232
Query: 271 XXXXXXXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFN 330
K+A++F T D+ L+ L + GI A + ++ Q R L F
Sbjct: 233 FALLCHLLKQEDVKRAIVFVKTRDVVSSLEGQLLQAGIPCAFMRGDMEQKKRFQALSRFT 292
Query: 331 AGLFDYLIATD 341
G + L+ATD
Sbjct: 293 KGEVNVLLATD 303
Score = 147 (56.8 bits), Expect = 1.7e-42, Sum P(2) = 1.7e-42
Identities = 31/77 (40%), Positives = 48/77 (62%)
Query: 359 SRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVS 418
SR +K L ++ RGID ++ VINF+MP++A Y+HRIGRTGRA G ++S
Sbjct: 289 SRFTKGEVNVLLATDVAA-RGIDIDDISHVINFDMPRSADTYIHRIGRTGRAGAKGTAIS 347
Query: 419 LVSPDEMKIFEEIKSFV 435
L +M+I +I+ ++
Sbjct: 348 LAEAHDMRIVGKIERYI 364
>TAIR|locus:2130918 [details] [associations]
symbol:AT4G16630 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:CP002687 GenomeReviews:CT486007_GR
GO:GO:0003723 EMBL:Z97341 EMBL:AL161544 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000265456 KO:K13181
OMA:RIRKRDH EMBL:AJ010475 EMBL:AK228353 IPI:IPI00542014 PIR:D71433
PIR:T51310 RefSeq:NP_193396.3 UniGene:At.49
ProteinModelPortal:Q9ZRZ8 SMR:Q9ZRZ8 IntAct:Q9ZRZ8 STRING:Q9ZRZ8
PaxDb:Q9ZRZ8 PRIDE:Q9ZRZ8 EnsemblPlants:AT4G16630.1 GeneID:827364
KEGG:ath:AT4G16630 GeneFarm:955 TAIR:At4g16630 InParanoid:Q9ZRZ8
PhylomeDB:Q9ZRZ8 ProtClustDB:CLSN2690957 Genevestigator:Q9ZRZ8
GermOnline:AT4G16630 Uniprot:Q9ZRZ8
Length = 789
Score = 379 (138.5 bits), Expect = 3.7e-42, Sum P(2) = 3.7e-42
Identities = 109/311 (35%), Positives = 152/311 (48%)
Query: 31 LGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFN 90
L L L+ A G +KPT IQ A IPL L G+D+ A A TGSGKT A+ LP L RL
Sbjct: 172 LNLSRPLLRACETLGYKKPTPIQAACIPLALTGRDLCASAITGSGKTAAFALPTLERLLF 231
Query: 91 ESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAAL 150
PK A L+L PTREL Q++S + L + +K + + + L
Sbjct: 232 R--PKRVFATRVLILTPTRELAVQIHSMIQNLAQF----TDIKCGLIVGGLSVREQEVVL 285
Query: 151 AGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIP 210
PDIV+ATPG M L + S D L +L+LDEAD LL G+ ++ L + P
Sbjct: 286 RSMPDIVVATPGRMIDHLRNSM--SVDLDD-LAVLILDEADRLLQTGFATEITELVRLCP 342
Query: 211 RGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKX 270
+ Q +L SAT + +V +L KL L+ P L+ + + + + V + I +
Sbjct: 343 KRRQTMLFSATMTEEVKELVKLSLNKPLRLSA-DPSARRPPGLTEEVVR--IRRTREANQ 399
Query: 271 XXXXXXXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFN 330
+ K +IF+ T A RLK+ G+K+A L+ L Q RL LE F
Sbjct: 400 EAVLLSLCTRTFKSKVIIFSGTKQAAHRLKILFGLAGLKAAELHGNLTQAQRLDSLELFR 459
Query: 331 AGLFDYLIATD 341
D+LIATD
Sbjct: 460 KQEVDFLIATD 470
Score = 132 (51.5 bits), Expect = 3.7e-42, Sum P(2) = 3.7e-42
Identities = 63/233 (27%), Positives = 94/233 (40%)
Query: 378 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGD 437
RG+D V TVIN+ P+ YVHR+GRT RA G +V+ V+ + + + I VG
Sbjct: 474 RGLDIIGVQTVINYACPREIDSYVHRVGRTARAGREGYAVTFVTDSDRSLLKVIAKKVGS 533
Query: 438 DENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRA-QDLRNEILNSEKLKA 496
S +I ++ + + ED +V A R+ RA + E +E +
Sbjct: 534 KLK--SRVIPEQSIVKWSQIID---EMEDQYSAVIS-AERDERALRKAEMEFAKAENMLE 587
Query: 497 HFE---VNPXXXXXXXXXXXXXXXPPASHLRDVP--DYLLDAKTQEACKMVKLARAAMGN 551
H + P P L+ A E KM K R
Sbjct: 588 HRDEIYARPKRTWFMTEKEKKLVAQAEKDSAGNPAGGELVSADRAEDLKM-KEKRKRERE 646
Query: 552 KNSSRRQGPRRKFRKS-DPLKSFSAEPTKRAGKGRMKREGRNGDDTGKHKKKK 603
KN R++ RRK + + L+ E + +G KR GR+ GK KKK+
Sbjct: 647 KNLPRKK--RRKLEAAREMLEDNEGEEEEEDEEGDEKR-GRS---RGKDKKKQ 693
Score = 43 (20.2 bits), Expect = 0.00013, Sum P(2) = 0.00013
Identities = 10/31 (32%), Positives = 19/31 (61%)
Query: 221 TSSSDVDKLKKLILHNPYILTLPEVGDVKDE 251
T+S D +K+ K I H P +++ E + ++E
Sbjct: 91 TTSID-EKISKAIQHRPVPISINEEEEEEEE 120
Score = 41 (19.5 bits), Expect = 1.3e-32, Sum P(2) = 1.3e-32
Identities = 10/45 (22%), Positives = 24/45 (53%)
Query: 341 DDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNV 385
+D + +E+++ +EG D ++ + K K E +G+ K++
Sbjct: 665 EDNEGEEEEEDEEG---DEKRGRSRGKDKKKQETDK-KGLTLKDL 705
>TIGR_CMR|SO_1383 [details] [associations]
symbol:SO_1383 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0006139
"nucleobase-containing compound metabolic process" evidence=ISS]
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:AE014299
GenomeReviews:AE014299_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
HSSP:Q58083 HOGENOM:HOG000268807 RefSeq:NP_717003.1
ProteinModelPortal:Q8EH47 GeneID:1169204 KEGG:son:SO_1383
PATRIC:23522420 OMA:SEVVHGE ProtClustDB:CLSK906234 Uniprot:Q8EH47
Length = 433
Score = 330 (121.2 bits), Expect = 4.3e-42, Sum P(2) = 4.3e-42
Identities = 101/305 (33%), Positives = 148/305 (48%)
Query: 37 LVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKS 96
++ A++ G QK T IQQ +IP I G+DV+A A+TG+GKT A+ LP+L ++ S
Sbjct: 12 ILRAISDCGYQKMTPIQQQAIPAIRRGQDVLASAQTGTGKTAAFALPILQKMVENPSETL 71
Query: 97 KLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDI 156
K L+L PTREL QV V A + + V+ + + L DI
Sbjct: 72 KSNTRVLILTPTRELAAQVAENVEAYSKY----LNFSVLTIYGGVKVETQAQKLKRGADI 127
Query: 157 VIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCL 216
++ATPG + + L+ L S S S+ LVLDEAD +L G+ D++ + + + Q L
Sbjct: 128 IVATPGRLLEHLTACNL---SLS-SVDFLVLDEADRMLDMGFSADIQKILQAVNKKRQNL 183
Query: 217 LMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKXXXXXXX 276
L SAT SS V KL ++ P +++ + D V Q +R K
Sbjct: 184 LFSATFSSAVKKLANEMMIKPQVISADKQNTTAD-----TVSQVVYPVEQRRKRELLSEL 238
Query: 277 XXXXXVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDY 336
Q+ L+FT T D A L L GI S +++ E Q SR L EF +G
Sbjct: 239 IGKKNWQQ-VLVFTATRDAADTLVKELNLDGIPSEVVHGEKAQGSRRRALREFVSGKVRV 297
Query: 337 LIATD 341
L+AT+
Sbjct: 298 LVATE 302
Score = 142 (55.0 bits), Expect = 4.3e-42, Sum P(2) = 4.3e-42
Identities = 26/59 (44%), Positives = 40/59 (67%)
Query: 378 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVG 436
RG+D ++ V+NF++P A YVHRIGRTGRA +G ++S VS +E + +I+ +G
Sbjct: 306 RGLDIPSLEYVVNFDLPFLAEDYVHRIGRTGRAGKSGVAISFVSREEERTLADIEKLIG 364
>UNIPROTKB|Q9KMW4 [details] [associations]
symbol:VC_A0204 "ATP-dependent RNA helicase RhlE"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
[GO:0008152 "metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE003853 GenomeReviews:AE003853_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 KO:K11927 PIR:E82488
RefSeq:NP_232603.1 ProteinModelPortal:Q9KMW4 DNASU:2612352
GeneID:2612352 KEGG:vch:VCA0204 PATRIC:20084977 OMA:AISFCDA
ProtClustDB:CLSK869561 Uniprot:Q9KMW4
Length = 451
Score = 337 (123.7 bits), Expect = 5.9e-42, Sum P(2) = 5.9e-42
Identities = 98/312 (31%), Positives = 155/312 (49%)
Query: 31 LGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFN 90
LGL ++ A+ +KG P+ IQ +IP +L GKDV+A A+TG+GKT + LP+L L
Sbjct: 6 LGLSAPILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPILELL-- 63
Query: 91 ESSPKSKLAPA-ALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAA 149
PK + AL+L PTREL Q+ VM L + LK + + +
Sbjct: 64 AKGPKVRANQVRALILTPTRELAAQIQDNVM----LYGRHLPLKSAVVFGGVKINPQMQR 119
Query: 150 LAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVI 209
+ DI++ATPG + + ++ F D L+ILVLDEAD +L G+ D+ + ++
Sbjct: 120 MCKGADILVATPGRLMDLYNQNAVK---F-DQLEILVLDEADRMLDMGFIRDIHKILKLL 175
Query: 210 PRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDK 269
P Q LL SAT S+++ +L K +++NP +++ + V+Q + K
Sbjct: 176 PEKRQNLLFSATFSTEIRELAKGLVNNPVEISVSPANSTA-----RTVEQCIYPADVKKK 230
Query: 270 XXXXXXXXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEF 329
Q+ L+F T A RL +L + G+ +A ++ Q +R L +F
Sbjct: 231 PDMLVKLVKEGNWQQ-VLVFMRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADF 289
Query: 330 NAGLFDYLIATD 341
AG L+ATD
Sbjct: 290 KAGEVRILVATD 301
Score = 133 (51.9 bits), Expect = 5.9e-42, Sum P(2) = 5.9e-42
Identities = 27/47 (57%), Positives = 33/47 (70%)
Query: 378 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDE 424
RGID + V+NFE+P+ A YVHRIGRTGRA G ++SLVS E
Sbjct: 305 RGIDIPQLPQVVNFELPKIAEDYVHRIGRTGRAGEVGKAISLVSAIE 351
>TIGR_CMR|VC_A0204 [details] [associations]
symbol:VC_A0204 "ATP-dependent RNA helicase RhlE"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008152
"metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE003853 GenomeReviews:AE003853_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 KO:K11927 PIR:E82488
RefSeq:NP_232603.1 ProteinModelPortal:Q9KMW4 DNASU:2612352
GeneID:2612352 KEGG:vch:VCA0204 PATRIC:20084977 OMA:AISFCDA
ProtClustDB:CLSK869561 Uniprot:Q9KMW4
Length = 451
Score = 337 (123.7 bits), Expect = 5.9e-42, Sum P(2) = 5.9e-42
Identities = 98/312 (31%), Positives = 155/312 (49%)
Query: 31 LGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFN 90
LGL ++ A+ +KG P+ IQ +IP +L GKDV+A A+TG+GKT + LP+L L
Sbjct: 6 LGLSAPILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPILELL-- 63
Query: 91 ESSPKSKLAPA-ALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAA 149
PK + AL+L PTREL Q+ VM L + LK + + +
Sbjct: 64 AKGPKVRANQVRALILTPTRELAAQIQDNVM----LYGRHLPLKSAVVFGGVKINPQMQR 119
Query: 150 LAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVI 209
+ DI++ATPG + + ++ F D L+ILVLDEAD +L G+ D+ + ++
Sbjct: 120 MCKGADILVATPGRLMDLYNQNAVK---F-DQLEILVLDEADRMLDMGFIRDIHKILKLL 175
Query: 210 PRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDK 269
P Q LL SAT S+++ +L K +++NP +++ + V+Q + K
Sbjct: 176 PEKRQNLLFSATFSTEIRELAKGLVNNPVEISVSPANSTA-----RTVEQCIYPADVKKK 230
Query: 270 XXXXXXXXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEF 329
Q+ L+F T A RL +L + G+ +A ++ Q +R L +F
Sbjct: 231 PDMLVKLVKEGNWQQ-VLVFMRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADF 289
Query: 330 NAGLFDYLIATD 341
AG L+ATD
Sbjct: 290 KAGEVRILVATD 301
Score = 133 (51.9 bits), Expect = 5.9e-42, Sum P(2) = 5.9e-42
Identities = 27/47 (57%), Positives = 33/47 (70%)
Query: 378 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDE 424
RGID + V+NFE+P+ A YVHRIGRTGRA G ++SLVS E
Sbjct: 305 RGIDIPQLPQVVNFELPKIAEDYVHRIGRTGRAGEVGKAISLVSAIE 351
>UNIPROTKB|Q48PB7 [details] [associations]
symbol:PSPPH_0449 "ATP-dependent RNA helicase RhlE,
putative" species:264730 "Pseudomonas syringae pv. phaseolicola
1448A" [GO:0006139 "nucleobase-containing compound metabolic
process" evidence=ISS] [GO:0008026 "ATP-dependent helicase
activity" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
EMBL:CP000058 GenomeReviews:CP000058_GR InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927
RefSeq:YP_272752.1 ProteinModelPortal:Q48PB7 GeneID:3558820
KEGG:psp:PSPPH_0449 PATRIC:19969930 OMA:DGDLMGF
ProtClustDB:CLSK865855 Uniprot:Q48PB7
Length = 625
Score = 350 (128.3 bits), Expect = 1.0e-41, Sum P(3) = 1.0e-41
Identities = 103/316 (32%), Positives = 158/316 (50%)
Query: 31 LGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFN 90
LGL LV A+ G +PT +QQ +IP +L+G+D++ A+TG+GKT + LP+L RLF
Sbjct: 6 LGLSEALVRAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPILERLFP 65
Query: 91 ESSP-KSKL----APAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASD 145
P KS+ P LVL PTREL QV+ +L ++ + + +
Sbjct: 66 NGVPDKSQRHGPRQPRVLVLTPTRELAAQVHES----FKLYARDLKFVSACIFGGVGMNP 121
Query: 146 LRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKAL 205
A++ D+++A PG + G S S ++ILVLDEAD +L G+ D+K +
Sbjct: 122 QVQAMSRGVDVLVACPGRLLDLAGQG---SVDLSH-VEILVLDEADRMLDMGFVHDVKKV 177
Query: 206 SAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCS 265
A +P Q LL SAT S+D+ L +LHNP + EV V + ++Q +
Sbjct: 178 LARLPAKRQNLLFSATFSNDITSLAGKLLHNPERI---EVTPPNTTV--ERIEQRVFRLA 232
Query: 266 ERDKXXXXXXXXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHI 325
K ++ L+FT T A RL +L+K G+ + ++ QN+R
Sbjct: 233 ANHKRSLLAHLITVGAWEQ-VLVFTRTKHGANRLAEYLDKHGLAAVAIHGNKSQNARTKA 291
Query: 326 LEEFNAGLFDYLIATD 341
L +F AG ++ATD
Sbjct: 292 LADFKAGDVRIMVATD 307
Score = 150 (57.9 bits), Expect = 1.0e-41, Sum P(3) = 1.0e-41
Identities = 37/94 (39%), Positives = 55/94 (58%)
Query: 378 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGD 437
RG+D + V+NFE+P YVHRIGRTGRA +G ++SLV+PDE K+ + I+
Sbjct: 311 RGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAPDEEKLLKSIERMT-K 369
Query: 438 DENEDSNIIAPFPLLAQNAVE-SLRYRAEDVAKS 470
+ D +++ F + A A + +R R DV S
Sbjct: 370 QKIADGDLMG-FDITAVEAEKPEVRERP-DVRNS 401
Score = 42 (19.8 bits), Expect = 1.0e-41, Sum P(3) = 1.0e-41
Identities = 13/36 (36%), Positives = 15/36 (41%)
Query: 569 PLKSFSAEPTKRAGKGRMKREGRNGDDTGKHKKKKS 604
P +A P A GR RNG TG K+ S
Sbjct: 511 PAAGGAARP---ANSGRPAGGARNGSGTGAPKRNGS 543
Score = 41 (19.5 bits), Expect = 1.3e-41, Sum P(3) = 1.3e-41
Identities = 16/54 (29%), Positives = 22/54 (40%)
Query: 538 ACKMVKLARAAMGNKNSSRRQGPRRKFRKSDPLKSFSAEPTKRAGKGRMKREGR 591
A + R A G +N S P+R S S+ P R G+ R +R R
Sbjct: 516 AARPANSGRPAGGARNGSGTGAPKRN-------GSGSSAPRSRDGQPRGRRPAR 562
Score = 40 (19.1 bits), Expect = 1.7e-41, Sum P(3) = 1.7e-41
Identities = 12/46 (26%), Positives = 19/46 (41%)
Query: 545 ARAAMGNKNSSRRQGPRRKFRKSDPLKSFSAEPTKRAGKGRMKREG 590
AR A N RR + K ++ + + E R + + REG
Sbjct: 404 ARPAGDKNNGGRRDKGKDKGKEKPAAAAATGERPARQPREKKPREG 449
Score = 39 (18.8 bits), Expect = 2.1e-41, Sum P(3) = 2.1e-41
Identities = 14/39 (35%), Positives = 16/39 (41%)
Query: 546 RAAMGNKNSSRRQG-PR--RKFRKSDPLKSFSAEPTKRA 581
R G+ R G PR R R+ PL EP RA
Sbjct: 540 RNGSGSSAPRSRDGQPRGRRPAREDQPLPREGQEPAVRA 578
>UNIPROTKB|Q4K4H4 [details] [associations]
symbol:rhlE_2 "Putative ATP-dependent RNA helicase"
species:220664 "Pseudomonas protegens Pf-5" [GO:0006139
"nucleobase-containing compound metabolic process" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0006139 GO:GO:0003676
EMBL:CP000076 GenomeReviews:CP000076_GR InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927
OMA:DGDLMGF ProtClustDB:CLSK865855 RefSeq:YP_262859.1
ProteinModelPortal:Q4K4H4 GeneID:3480173 KEGG:pfl:PFL_5801
PATRIC:19881109 BioCyc:PFLU220664:GIX8-5841-MONOMER Uniprot:Q4K4H4
Length = 622
Score = 356 (130.4 bits), Expect = 1.2e-41, Sum P(2) = 1.2e-41
Identities = 108/317 (34%), Positives = 158/317 (49%)
Query: 31 LGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFN 90
LGL LV A+ G +PT +QQ +IP +L+G+D++ A+TG+GKT + LP+L RLF
Sbjct: 6 LGLSEALVGAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPILERLFP 65
Query: 91 ESSP-KSKL----APAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASD 145
P KS+ P LVL PTREL QV+ +L ++ + + +
Sbjct: 66 NGHPDKSQRHGPRQPRVLVLTPTRELAAQVHDS----FKLYARDLKFVSACIFGGVGMNP 121
Query: 146 LRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKAL 205
A+A D+++A PG + G S S ++ILVLDEAD +L G+ D+K +
Sbjct: 122 QVQAMARGVDVLVACPGRLLDLAGQG---SVDLSH-VEILVLDEADRMLDMGFVHDVKKV 177
Query: 206 SAVIPRGCQCLLMSATSSSDVDKLKKLILHNPY-ILTLPEVGDVKDEVIPKNVQQFWISC 264
A +P Q LL SAT S D+ L +LHNP I P V E I + V F +
Sbjct: 178 LARLPAKRQNLLFSATFSKDITDLAGKLLHNPERIEVTPPNTTV--ERIEQRV--FRLPA 233
Query: 265 SERDKXXXXXXXXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLH 324
S + ++ L+FT T A RL +L+K G+ + ++ QN+R
Sbjct: 234 SHK---RALLAHLITAGAWEQVLVFTRTKHGANRLAEYLDKHGLSAVAIHGNKSQNARTK 290
Query: 325 ILEEFNAGLFDYLIATD 341
L +F AG L+ATD
Sbjct: 291 ALADFKAGEVRILVATD 307
Score = 149 (57.5 bits), Expect = 1.2e-41, Sum P(2) = 1.2e-41
Identities = 28/55 (50%), Positives = 39/55 (70%)
Query: 378 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIK 432
RG+D + V+NFE+P YVHRIGRTGRA +G ++SLV+PDE K+ + I+
Sbjct: 311 RGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAPDEEKLLKSIE 365
>DICTYBASE|DDB_G0281711 [details] [associations]
symbol:ddx27 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0042254 "ribosome biogenesis" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
dictyBase:DDB_G0281711 GO:GO:0005524 GO:GO:0005634
GenomeReviews:CM000152_GR GO:GO:0042254 GO:GO:0003723
EMBL:AAFI02000042 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K13181 RefSeq:XP_640597.1 HSSP:Q5STU4 ProteinModelPortal:Q54TJ4
STRING:Q54TJ4 EnsemblProtists:DDB0234201 GeneID:8623207
KEGG:ddi:DDB_G0281711 OMA:SEYRAIR Uniprot:Q54TJ4
Length = 783
Score = 351 (128.6 bits), Expect = 3.1e-41, Sum P(3) = 3.1e-41
Identities = 107/313 (34%), Positives = 157/313 (50%)
Query: 31 LGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRL-F 89
L L L+ A+ K G +PT IQ +IPL L GKD++A A TGSGKT A+LLP+L RL F
Sbjct: 195 LHLSRPLLKAVQKLGFSQPTPIQAKAIPLALNGKDILASASTGSGKTAAFLLPVLERLLF 254
Query: 90 NESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAA 149
+S + A L+L+PTREL Q S + L + L V L++ +LR +
Sbjct: 255 RDSEYR---AIRVLILLPTRELALQCQSVMENLAQFSNITSCLIVGGLSNKAQEVELRKS 311
Query: 150 LAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLKALSAV 208
PD+VIATPG L +L + D L+IL+LDEAD LL G++D++ +
Sbjct: 312 ----PDVVIATPGR----LIDHLLNAHGIGLDDLEILILDEADRLLDMGFKDEINKIVES 363
Query: 209 IPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERD 268
P Q +L SAT + +V L KL L P + + + V + + V+ S+R
Sbjct: 364 CPTNRQTMLFSATLNDEVKTLAKLSLQQPIRVQVDALMQVTSTLEQEFVKIKPQHLSDRP 423
Query: 269 KXXXXXXXXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEE 328
Q +IF + RL++ +K+A L+ L Q R L++
Sbjct: 424 AILLSLCTRVFN--QGGTIIFCRSKKEVHRLRIIFGLSDLKAAELHGNLSQEQRFDSLQQ 481
Query: 329 FNAGLFDYLIATD 341
F G +YL+A+D
Sbjct: 482 FRDGQVNYLLASD 494
Score = 158 (60.7 bits), Expect = 3.1e-41, Sum P(3) = 3.1e-41
Identities = 42/127 (33%), Positives = 69/127 (54%)
Query: 378 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGD 437
RG+D V TVIN+ MP N A Y+HR+GRT RA G S S ++ ++ K+ ++I V
Sbjct: 498 RGLDIIGVKTVINYNMPNNMANYIHRVGRTARAGMDGKSCSFITDNDRKLLKDI---VTK 554
Query: 438 DENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRN--EILN-SEKL 494
N+ A ++Q+ V R R E++ + + I E + DLR + L+ +EK+
Sbjct: 555 ARNK-----AKSRSVSQDNVNFWRNRIEELTEDIKSIVREEMKEADLRKAEKTLDKAEKI 609
Query: 495 KAHFEVN 501
++ + N
Sbjct: 610 ISNADAN 616
Score = 37 (18.1 bits), Expect = 3.1e-41, Sum P(3) = 3.1e-41
Identities = 9/31 (29%), Positives = 15/31 (48%)
Query: 565 RKSDPLKSFSAEPTKRAGKGRMKREGRNGDD 595
RK + F E + + R ++ G +GDD
Sbjct: 680 RKQRRHRQFKEEFEREQQEERKRKGGDDGDD 710
>UNIPROTKB|F1NQV5 [details] [associations]
symbol:DDX27 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00550000074997 EMBL:AADN02019007 IPI:IPI00579774
Ensembl:ENSGALT00000039062 ArrayExpress:F1NQV5 Uniprot:F1NQV5
Length = 758
Score = 338 (124.0 bits), Expect = 3.1e-41, Sum P(3) = 3.1e-41
Identities = 103/313 (32%), Positives = 150/313 (47%)
Query: 31 LGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFN 90
+ L L+ A+ G ++PT IQ+A IP+ L GKD+ A A TG+GKT A++LP+L RL
Sbjct: 185 MNLSRPLLKAITALGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFILPVLERLIY 244
Query: 91 ESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAAL 150
+ P+ LVLVPTREL QV+S L + L V + AAL
Sbjct: 245 K--PRQAPITRVLVLVPTRELGIQVHSVTKQLAQFSSVTTCLAV----GGLDVKTQEAAL 298
Query: 151 AGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLKALSAVI 209
PDI+IATPG + L SF S+++L+LDEAD +L +E+ +K + +
Sbjct: 299 RSGPDILIATPGRLIDHLHN----CPSFHLSSVEVLILDEADRMLDEYFEEQMKEIIRLC 354
Query: 210 PRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFW-ISCSERD 268
R Q +L SAT + +V L + L NP + + + +V P Q+F I +
Sbjct: 355 SRHRQTMLFSATMTEEVKDLASVSLKNPTRIFV----NSNTDVAPFLRQEFIRIRPNREG 410
Query: 269 KXXXXXXXXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEE 328
++FT T A R+ + L G++ L+ L Q RL L
Sbjct: 411 DREAIVSALLTRTFPDHVMLFTQTKKQAHRMHILLGLMGLRVGELHGNLSQAQRLEALRR 470
Query: 329 FNAGLFDYLIATD 341
F D L+ATD
Sbjct: 471 FKDEQIDILVATD 483
Score = 159 (61.0 bits), Expect = 3.1e-41, Sum P(3) = 3.1e-41
Identities = 41/122 (33%), Positives = 60/122 (49%)
Query: 378 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGD 437
RG+D + V TVINF MP YVHR+GRT RA G SVSLV +E K+ +EI
Sbjct: 487 RGLDIEGVKTVINFTMPNTTKHYVHRVGRTARAGRAGRSVSLVGEEERKMLKEIVKAA-- 544
Query: 438 DENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAH 497
+ + A +L Q+ + R + E++ K V + E ++++ K K
Sbjct: 545 ----KTPVKAR--ILPQDVILKFREKIENLEKDVYAVLCLEREEREMQQSEAQINKAKKQ 598
Query: 498 FE 499
E
Sbjct: 599 LE 600
Score = 51 (23.0 bits), Expect = 3.1e-41, Sum P(3) = 3.1e-41
Identities = 23/78 (29%), Positives = 38/78 (48%)
Query: 540 KMVKLARAAMGNKNSSRRQGPRRKFRKS--DP---------LKSFSAEPT----KRAGKG 584
+ VK ARA + ++ +GP+RK + S D LK + A P+ KR G
Sbjct: 682 RRVKRARALPEEEPAAAPKGPKRKKKVSVFDEELTNTSRKALKQYRAGPSFEDRKRLGMA 741
Query: 585 RMKREGRNGDDTGKHKKK 602
+ +R+G N ++K+K
Sbjct: 742 Q-RRKGGNFKSKSRYKRK 758
Score = 42 (19.8 bits), Expect = 2.7e-40, Sum P(3) = 2.7e-40
Identities = 14/48 (29%), Positives = 24/48 (50%)
Query: 534 KTQEACKMVKLARAAMGNKNSSRRQGPRRKFRKSDPLKSFSAEPTKRA 581
+T+E K KLA+A + R + R+KF + D + P +R+
Sbjct: 617 QTREERKKEKLAKALQEFDLALRGKKKRKKFMQ-DTQRKAQMTPEERS 663
>SGD|S000001767 [details] [associations]
symbol:TIF1 "Translation initiation factor eIF4A"
species:4932 "Saccharomyces cerevisiae" [GO:0003743 "translation
initiation factor activity" evidence=IEA;IMP;IDA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0006413 "translational
initiation" evidence=IEA;IMP;IDA] [GO:0006412 "translation"
evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IMP;IDA] [GO:0005840 "ribosome" evidence=TAS] [GO:0016281
"eukaryotic translation initiation factor 4F complex"
evidence=IGI;ISS] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 SGD:S000001767
SGD:S000003674 GO:GO:0005524 GO:GO:0005737 EMBL:BK006943
EMBL:BK006944 GO:GO:0003743 EMBL:X87371 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 KO:K03854
eggNOG:COG0513 HOGENOM:HOG000268797 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00530000062880 EMBL:U25436 KO:K03257
OMA:IKMFILD OrthoDB:EOG4PG98F EMBL:X12813 EMBL:X12814 EMBL:X58099
EMBL:Z49413 EMBL:Z28284 PIR:S05835 RefSeq:NP_012397.1
RefSeq:NP_012985.3 RefSeq:NP_012987.3 PDB:1FUK PDB:1FUU PDB:1QDE
PDB:1QVA PDB:2VSO PDB:2VSX PDBsum:1FUK PDBsum:1FUU PDBsum:1QDE
PDBsum:1QVA PDBsum:2VSO PDBsum:2VSX ProteinModelPortal:P10081
SMR:P10081 DIP:DIP-4571N IntAct:P10081 MINT:MINT-546056
STRING:P10081 SWISS-2DPAGE:P10081 PaxDb:P10081 EnsemblFungi:YJL138C
EnsemblFungi:YKR059W GeneID:853303 GeneID:853933 GeneID:853935
KEGG:sce:YJL138C KEGG:sce:YKR059W KEGG:sce:YKR061W SABIO-RK:P10081
EvolutionaryTrace:P10081 NextBio:973627 Genevestigator:P10081
GermOnline:YJL138C GermOnline:YKR059W Uniprot:P10081
Length = 395
Score = 331 (121.6 bits), Expect = 1.2e-40, Sum P(2) = 1.2e-40
Identities = 102/312 (32%), Positives = 166/312 (53%)
Query: 33 LDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNES 92
LD L+ + G ++P+ IQQ +I I+EG DV+A+A++G+GKT + + L R+ ++
Sbjct: 29 LDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRI--DT 86
Query: 93 SPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAALAG 152
S K AP AL+L PTREL Q+ VMAL +V + + A LR A
Sbjct: 87 SVK---APQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLRDA--- 140
Query: 153 PPDIVIATPGCMPKCLSTGVLQSKSF-SDSLKILVLDEADLLLSYGYEDDLKALSAVIPR 211
IV+ TPG + +Q + F +D +K+ +LDEAD +LS G+++ + + ++P
Sbjct: 141 --QIVVGTPG---RVFDN--IQRRRFRTDKIKMFILDEADEMLSSGFKEQIYQIFTLLPP 193
Query: 212 GCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKXX 271
Q +L+SAT +DV ++ + NP + + KDE+ + ++QF+++ E +
Sbjct: 194 TTQVVLLSATMPNDVLEVTTKFMRNPVRILVK-----KDELTLEGIKQFYVNVEEEEYKY 248
Query: 272 XXXXXXXXXXVQKKALIFTNTIDMAFRL--KLFLEKFGIKSAILNAELPQNSRLHILEEF 329
+A+IF NT L KL +KF + SAI + +LPQ R I++EF
Sbjct: 249 ECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRNDKFTV-SAIYS-DLPQQERDTIMKEF 306
Query: 330 NAGLFDYLIATD 341
+G LI+TD
Sbjct: 307 RSGSSRILISTD 318
Score = 127 (49.8 bits), Expect = 1.2e-40, Sum P(2) = 1.2e-40
Identities = 25/72 (34%), Positives = 41/72 (56%)
Query: 376 VVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 435
+ RGID + V VIN+++P N Y+HRIGR GR G +++ V+ +++ E++ F
Sbjct: 320 LARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELEKFY 379
Query: 436 GDDENEDSNIIA 447
E + IA
Sbjct: 380 STQIEELPSDIA 391
>SGD|S000003674 [details] [associations]
symbol:TIF2 "Translation initiation factor eIF4A"
species:4932 "Saccharomyces cerevisiae" [GO:0003743 "translation
initiation factor activity" evidence=IEA;ISS;IDA;TAS] [GO:0005886
"plasma membrane" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IEA;ISS;IDA] [GO:0006446 "regulation of translational
initiation" evidence=ISS] [GO:0005840 "ribosome" evidence=TAS]
[GO:0016281 "eukaryotic translation initiation factor 4F complex"
evidence=IGI;ISS] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IMP] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006412 "translation"
evidence=IEA] [GO:0006413 "translational initiation"
evidence=IEA;TAS] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 SGD:S000001767 SGD:S000003674 GO:GO:0005524
GO:GO:0005737 EMBL:BK006943 EMBL:BK006944 GO:GO:0003743 EMBL:X87371
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
KO:K03854 eggNOG:COG0513 HOGENOM:HOG000268797 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00530000062880 EMBL:U25436 KO:K03257
OMA:IKMFILD OrthoDB:EOG4PG98F EMBL:X12813 EMBL:X12814 EMBL:X58099
EMBL:Z49413 EMBL:Z28284 PIR:S05835 RefSeq:NP_012397.1
RefSeq:NP_012985.3 RefSeq:NP_012987.3 PDB:1FUK PDB:1FUU PDB:1QDE
PDB:1QVA PDB:2VSO PDB:2VSX PDBsum:1FUK PDBsum:1FUU PDBsum:1QDE
PDBsum:1QVA PDBsum:2VSO PDBsum:2VSX ProteinModelPortal:P10081
SMR:P10081 DIP:DIP-4571N IntAct:P10081 MINT:MINT-546056
STRING:P10081 SWISS-2DPAGE:P10081 PaxDb:P10081 EnsemblFungi:YJL138C
EnsemblFungi:YKR059W GeneID:853303 GeneID:853933 GeneID:853935
KEGG:sce:YJL138C KEGG:sce:YKR059W KEGG:sce:YKR061W SABIO-RK:P10081
EvolutionaryTrace:P10081 NextBio:973627 Genevestigator:P10081
GermOnline:YJL138C GermOnline:YKR059W Uniprot:P10081
Length = 395
Score = 331 (121.6 bits), Expect = 1.2e-40, Sum P(2) = 1.2e-40
Identities = 102/312 (32%), Positives = 166/312 (53%)
Query: 33 LDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNES 92
LD L+ + G ++P+ IQQ +I I+EG DV+A+A++G+GKT + + L R+ ++
Sbjct: 29 LDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRI--DT 86
Query: 93 SPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAALAG 152
S K AP AL+L PTREL Q+ VMAL +V + + A LR A
Sbjct: 87 SVK---APQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLRDA--- 140
Query: 153 PPDIVIATPGCMPKCLSTGVLQSKSF-SDSLKILVLDEADLLLSYGYEDDLKALSAVIPR 211
IV+ TPG + +Q + F +D +K+ +LDEAD +LS G+++ + + ++P
Sbjct: 141 --QIVVGTPG---RVFDN--IQRRRFRTDKIKMFILDEADEMLSSGFKEQIYQIFTLLPP 193
Query: 212 GCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKXX 271
Q +L+SAT +DV ++ + NP + + KDE+ + ++QF+++ E +
Sbjct: 194 TTQVVLLSATMPNDVLEVTTKFMRNPVRILVK-----KDELTLEGIKQFYVNVEEEEYKY 248
Query: 272 XXXXXXXXXXVQKKALIFTNTIDMAFRL--KLFLEKFGIKSAILNAELPQNSRLHILEEF 329
+A+IF NT L KL +KF + SAI + +LPQ R I++EF
Sbjct: 249 ECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRNDKFTV-SAIYS-DLPQQERDTIMKEF 306
Query: 330 NAGLFDYLIATD 341
+G LI+TD
Sbjct: 307 RSGSSRILISTD 318
Score = 127 (49.8 bits), Expect = 1.2e-40, Sum P(2) = 1.2e-40
Identities = 25/72 (34%), Positives = 41/72 (56%)
Query: 376 VVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 435
+ RGID + V VIN+++P N Y+HRIGR GR G +++ V+ +++ E++ F
Sbjct: 320 LARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELEKFY 379
Query: 436 GDDENEDSNIIA 447
E + IA
Sbjct: 380 STQIEELPSDIA 391
>UNIPROTKB|Q96GQ7 [details] [associations]
symbol:DDX27 "Probable ATP-dependent RNA helicase DDX27"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
CTD:55661 HOVERGEN:HBG106162 KO:K13181 OMA:TRTFTDH EMBL:AY044431
EMBL:AF336851 EMBL:AL049766 EMBL:AL357560 EMBL:BC009304
EMBL:BC011927 EMBL:BC016060 EMBL:BC126287 EMBL:BC130275
EMBL:BC144125 EMBL:AK022979 EMBL:AK000603 EMBL:AF193054
EMBL:AF161377 IPI:IPI00293078 RefSeq:NP_060365.7 UniGene:Hs.129261
UniGene:Hs.65234 ProteinModelPortal:Q96GQ7 SMR:Q96GQ7 IntAct:Q96GQ7
MINT:MINT-1420816 STRING:Q96GQ7 PhosphoSite:Q96GQ7 DMDM:29427946
SWISS-2DPAGE:Q96GQ7 PaxDb:Q96GQ7 PeptideAtlas:Q96GQ7 PRIDE:Q96GQ7
DNASU:55661 Ensembl:ENST00000371764 GeneID:55661 KEGG:hsa:55661
UCSC:uc002xuh.3 GeneCards:GC20P047835 HGNC:HGNC:15837 HPA:HPA047087
neXtProt:NX_Q96GQ7 PharmGKB:PA27213 InParanoid:Q96GQ7
OrthoDB:EOG4NVZJV PhylomeDB:Q96GQ7 ChiTaRS:DDX27 GenomeRNAi:55661
NextBio:60399 ArrayExpress:Q96GQ7 Bgee:Q96GQ7 CleanEx:HS_DDX27
Genevestigator:Q96GQ7 GermOnline:ENSG00000124228 Uniprot:Q96GQ7
Length = 796
Score = 346 (126.9 bits), Expect = 1.9e-40, Sum P(3) = 1.9e-40
Identities = 105/313 (33%), Positives = 151/313 (48%)
Query: 31 LGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFN 90
+ L L+ A+ G ++PT IQ+A IP+ L GKD+ A A TG+GKT A+ LP+L RL
Sbjct: 223 MNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVLERLIY 282
Query: 91 ESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAAL 150
+ P+ LVLVPTREL QV+S L + C L V L + LRAA
Sbjct: 283 K--PRQAPVTRVLVLVPTRELGIQVHSVTRQLAQFCNITTCLAVGGLDVKSQEAALRAA- 339
Query: 151 AGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLKALSAVI 209
PDI+IATPG + L SF S+++L+LDEAD +L +E+ +K + +
Sbjct: 340 ---PDILIATPGRLIDHLHN----CPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMC 392
Query: 210 PRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFW-ISCSERD 268
Q +L SAT + +V L + L NP + + + +V P Q+F I +
Sbjct: 393 SHHRQTMLFSATMTDEVKDLASVSLKNPVRIFV----NSNTDVAPFLRQEFIRIRPNREG 448
Query: 269 KXXXXXXXXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEE 328
++FT T A R+ + L G++ L+ L Q RL L
Sbjct: 449 DREAIVAALLTRTFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRR 508
Query: 329 FNAGLFDYLIATD 341
F D L+ATD
Sbjct: 509 FKDEQIDILVATD 521
Score = 154 (59.3 bits), Expect = 1.9e-40, Sum P(3) = 1.9e-40
Identities = 31/54 (57%), Positives = 36/54 (66%)
Query: 378 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEI 431
RG+D + V TVINF MP YVHR+GRT RA G SVSLV DE K+ +EI
Sbjct: 525 RGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEDERKMLKEI 578
Score = 40 (19.1 bits), Expect = 1.9e-40, Sum P(3) = 1.9e-40
Identities = 14/44 (31%), Positives = 22/44 (50%)
Query: 534 KTQEACKMVKLARAAMGNKNSSRRQGPRRKFRKSDPLKS-FSAE 576
+T+E K K+A+A + R + R+KF K K +AE
Sbjct: 654 QTKEERKKEKIAKALQEFDLALRGKKKRKKFMKDAKKKGEMTAE 697
>UNIPROTKB|Q8EE19 [details] [associations]
symbol:SO_2571 "ATP-dependent RNA helicase DEAD box family"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 OMA:FRNLCAI
HOGENOM:HOG000268807 RefSeq:NP_718157.1 ProteinModelPortal:Q8EE19
GeneID:1170275 KEGG:son:SO_2571 PATRIC:23524769
ProtClustDB:CLSK906777 Uniprot:Q8EE19
Length = 475
Score = 337 (123.7 bits), Expect = 2.1e-40, Sum P(2) = 2.1e-40
Identities = 100/310 (32%), Positives = 157/310 (50%)
Query: 31 LGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFN 90
LGL LV A+ + G Q PT IQ +IP IL GK+V+A A+TG+GKT +++LPLLHR +
Sbjct: 6 LGLHSALVKAVTELGYQSPTPIQTQAIPSILAGKNVLAAAQTGTGKTASFVLPLLHRFAD 65
Query: 91 ESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAAL 150
+ K +++L PTREL QV + + K + L + + + A+ + L
Sbjct: 66 APKIRPKRV-RSIILTPTRELALQVEQNIN---QYAK-YLPLTAMAMYGGVDAAPQKKRL 120
Query: 151 AGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIP 210
D+++ATPG + L ++ F D + +LVLDEAD +L G+ +D+ + +P
Sbjct: 121 IEGVDLLVATPG---RLLDMYTQRAIRF-DEVSVLVLDEADRMLDMGFIEDINNIIEKLP 176
Query: 211 RGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKX 270
Q LL SAT S V L K + P + + E+ + + Q W++ ++D+
Sbjct: 177 EQRQNLLFSATLSKQVKALAKTAI--PDAIEI-EIS--RKNAASTQIDQ-WLTTVDKDRK 230
Query: 271 XXXXXXXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFN 330
+ALIF T A +L LEK GI + ++ Q R +L +F
Sbjct: 231 SALLSHLIKENNWAQALIFIQTKHGAAKLVSQLEKRGIVAEAFHSGRSQAIREQLLIDFK 290
Query: 331 AGLFDYLIAT 340
AG +L+AT
Sbjct: 291 AGKVPFLVAT 300
Score = 142 (55.0 bits), Expect = 2.1e-40, Sum P(2) = 2.1e-40
Identities = 28/53 (52%), Positives = 37/53 (69%)
Query: 375 GVV-RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMK 426
GVV RGID + VIN+++P A Y+HRIGRTGRA N G ++S VS D+ +
Sbjct: 301 GVVSRGIDIDALERVINYDLPDEADDYIHRIGRTGRAGNQGEAISFVSKDDFR 353
>TIGR_CMR|SO_2571 [details] [associations]
symbol:SO_2571 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 OMA:FRNLCAI
HOGENOM:HOG000268807 RefSeq:NP_718157.1 ProteinModelPortal:Q8EE19
GeneID:1170275 KEGG:son:SO_2571 PATRIC:23524769
ProtClustDB:CLSK906777 Uniprot:Q8EE19
Length = 475
Score = 337 (123.7 bits), Expect = 2.1e-40, Sum P(2) = 2.1e-40
Identities = 100/310 (32%), Positives = 157/310 (50%)
Query: 31 LGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFN 90
LGL LV A+ + G Q PT IQ +IP IL GK+V+A A+TG+GKT +++LPLLHR +
Sbjct: 6 LGLHSALVKAVTELGYQSPTPIQTQAIPSILAGKNVLAAAQTGTGKTASFVLPLLHRFAD 65
Query: 91 ESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAAL 150
+ K +++L PTREL QV + + K + L + + + A+ + L
Sbjct: 66 APKIRPKRV-RSIILTPTRELALQVEQNIN---QYAK-YLPLTAMAMYGGVDAAPQKKRL 120
Query: 151 AGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIP 210
D+++ATPG + L ++ F D + +LVLDEAD +L G+ +D+ + +P
Sbjct: 121 IEGVDLLVATPG---RLLDMYTQRAIRF-DEVSVLVLDEADRMLDMGFIEDINNIIEKLP 176
Query: 211 RGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKX 270
Q LL SAT S V L K + P + + E+ + + Q W++ ++D+
Sbjct: 177 EQRQNLLFSATLSKQVKALAKTAI--PDAIEI-EIS--RKNAASTQIDQ-WLTTVDKDRK 230
Query: 271 XXXXXXXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFN 330
+ALIF T A +L LEK GI + ++ Q R +L +F
Sbjct: 231 SALLSHLIKENNWAQALIFIQTKHGAAKLVSQLEKRGIVAEAFHSGRSQAIREQLLIDFK 290
Query: 331 AGLFDYLIAT 340
AG +L+AT
Sbjct: 291 AGKVPFLVAT 300
Score = 142 (55.0 bits), Expect = 2.1e-40, Sum P(2) = 2.1e-40
Identities = 28/53 (52%), Positives = 37/53 (69%)
Query: 375 GVV-RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMK 426
GVV RGID + VIN+++P A Y+HRIGRTGRA N G ++S VS D+ +
Sbjct: 301 GVVSRGIDIDALERVINYDLPDEADDYIHRIGRTGRAGNQGEAISFVSKDDFR 353
>MGI|MGI:2385884 [details] [associations]
symbol:Ddx27 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 27"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0005634 "nucleus" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0016787 "hydrolase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 MGI:MGI:2385884 GO:GO:0005524
GO:GO:0005634 EMBL:CH466551 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 CTD:55661
GeneTree:ENSGT00550000074997 HOGENOM:HOG000265456
HOVERGEN:HBG106162 KO:K13181 OMA:TRTFTDH OrthoDB:EOG4NVZJV
EMBL:AK134274 EMBL:AK138442 EMBL:AL591711 EMBL:BC011321
EMBL:BC024730 EMBL:BC026381 IPI:IPI00122038 IPI:IPI00230236
RefSeq:NP_694705.2 UniGene:Mm.295031 ProteinModelPortal:Q921N6
SMR:Q921N6 PhosphoSite:Q921N6 PaxDb:Q921N6 PRIDE:Q921N6
Ensembl:ENSMUST00000018143 Ensembl:ENSMUST00000150571 GeneID:228889
KEGG:mmu:228889 UCSC:uc008nza.1 InParanoid:Q3UUG2 NextBio:379240
Bgee:Q921N6 CleanEx:MM_DDX27 Genevestigator:Q921N6
GermOnline:ENSMUSG00000017999 Uniprot:Q921N6
Length = 760
Score = 347 (127.2 bits), Expect = 2.1e-40, Sum P(3) = 2.1e-40
Identities = 105/313 (33%), Positives = 151/313 (48%)
Query: 31 LGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFN 90
+ L L+ A+ G ++PT IQ+A IP+ L GKD+ A A TG+GKT A+ LP+L RL
Sbjct: 189 MNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVLERLIY 248
Query: 91 ESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAAL 150
+ P+ LVLVPTREL QV+S L + C L V L + LRAA
Sbjct: 249 K--PRQAAVTRVLVLVPTRELGIQVHSVTKQLAQFCSITTCLAVGGLDVKSQEAALRAA- 305
Query: 151 AGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLKALSAVI 209
PDI+IATPG + L SF S+++L+LDEAD +L +E+ +K + +
Sbjct: 306 ---PDILIATPGRLIDHLHN----CPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMC 358
Query: 210 PRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFW-ISCSERD 268
Q +L SAT + +V L + L NP + + + +V P Q+F I +
Sbjct: 359 SHHRQTMLFSATMTDEVKDLASVSLKNPVRIFV----NSNTDVAPFLRQEFIRIRPNREG 414
Query: 269 KXXXXXXXXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEE 328
++FT T A R+ + L G++ L+ L Q RL L
Sbjct: 415 DREAIVAALLMRTFTDHVMLFTQTKKQAHRMHILLGLLGLQVGELHGNLSQTQRLEALRR 474
Query: 329 FNAGLFDYLIATD 341
F D L+ATD
Sbjct: 475 FKDEQIDILVATD 487
Score = 151 (58.2 bits), Expect = 2.1e-40, Sum P(3) = 2.1e-40
Identities = 30/54 (55%), Positives = 36/54 (66%)
Query: 378 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEI 431
RG+D + V TVINF MP YVHR+GRT RA G SVSLV +E K+ +EI
Sbjct: 491 RGLDIEGVKTVINFTMPNTVKHYVHRVGRTARAGRAGRSVSLVGEEERKMLKEI 544
Score = 40 (19.1 bits), Expect = 2.1e-40, Sum P(3) = 2.1e-40
Identities = 14/44 (31%), Positives = 22/44 (50%)
Query: 534 KTQEACKMVKLARAAMGNKNSSRRQGPRRKFRKSDPLKS-FSAE 576
+T+E K K+A+A + R + R+KF K K +AE
Sbjct: 620 QTKEERKKEKIAKALQEFDLALRGKKKRKKFMKDAKKKGEMTAE 663
>UNIPROTKB|J9P9C6 [details] [associations]
symbol:DDX27 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00550000074997 OMA:TRTFTDH EMBL:AAEX03013992
Ensembl:ENSCAFT00000046251 Uniprot:J9P9C6
Length = 788
Score = 347 (127.2 bits), Expect = 2.8e-40, Sum P(3) = 2.8e-40
Identities = 105/313 (33%), Positives = 151/313 (48%)
Query: 31 LGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFN 90
+ L L+ A+ G ++PT IQ+A IP+ L GKD+ A A TG+GKT A+ LP+L RL
Sbjct: 213 MNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVLERLIY 272
Query: 91 ESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAAL 150
+ P+ LVLVPTREL QV+S L + C L V L + LRAA
Sbjct: 273 K--PRQSPVTRVLVLVPTRELGIQVHSVTKQLAQFCNITTCLAVGGLDVKSQEAALRAA- 329
Query: 151 AGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLKALSAVI 209
PDI+IATPG + L SF S+++L+LDEAD +L +E+ +K + +
Sbjct: 330 ---PDILIATPGRLIDHLHN----CPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMC 382
Query: 210 PRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFW-ISCSERD 268
Q +L SAT + +V L + L NP + + + +V P Q+F I +
Sbjct: 383 SHHRQTMLFSATMTDEVKDLASVSLKNPVRIFV----NSNTDVAPFLRQEFVRIRPNREG 438
Query: 269 KXXXXXXXXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEE 328
++FT T A R+ + L G++ L+ L Q RL L
Sbjct: 439 DREAIVAALLTRTFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRR 498
Query: 329 FNAGLFDYLIATD 341
F D L+ATD
Sbjct: 499 FKDEQIDILVATD 511
Score = 151 (58.2 bits), Expect = 2.8e-40, Sum P(3) = 2.8e-40
Identities = 39/108 (36%), Positives = 57/108 (52%)
Query: 378 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGD 437
RG+D + V TVINF MP YVHR+GRT RA G SVSLV +E K+ +EI
Sbjct: 515 RGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEEERKMLKEIVKAA-- 572
Query: 438 DENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLR 485
+ + A +L Q+ + R + E + K V + E+ ++L+
Sbjct: 573 ----KAPVKAR--ILPQDVILKFRDKIEKMEKDVYAVLQLEAEEKELQ 614
Score = 40 (19.1 bits), Expect = 2.8e-40, Sum P(3) = 2.8e-40
Identities = 14/44 (31%), Positives = 22/44 (50%)
Query: 534 KTQEACKMVKLARAAMGNKNSSRRQGPRRKFRKSDPLKS-FSAE 576
+T+E K K+A+A + R + R+KF K K +AE
Sbjct: 646 QTKEERKKEKIAKALQEFDLALRGKKKRKKFMKDAKKKGEMTAE 689
>UNIPROTKB|F1Q073 [details] [associations]
symbol:DDX27 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00550000074997 EMBL:AAEX03013992
Ensembl:ENSCAFT00000018089 Uniprot:F1Q073
Length = 767
Score = 347 (127.2 bits), Expect = 4.0e-40, Sum P(2) = 4.0e-40
Identities = 105/313 (33%), Positives = 151/313 (48%)
Query: 31 LGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFN 90
+ L L+ A+ G ++PT IQ+A IP+ L GKD+ A A TG+GKT A+ LP+L RL
Sbjct: 192 MNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVLERLIY 251
Query: 91 ESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAAL 150
+ P+ LVLVPTREL QV+S L + C L V L + LRAA
Sbjct: 252 K--PRQSPVTRVLVLVPTRELGIQVHSVTKQLAQFCNITTCLAVGGLDVKSQEAALRAA- 308
Query: 151 AGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLKALSAVI 209
PDI+IATPG + L SF S+++L+LDEAD +L +E+ +K + +
Sbjct: 309 ---PDILIATPGRLIDHLHN----CPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMC 361
Query: 210 PRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFW-ISCSERD 268
Q +L SAT + +V L + L NP + + + +V P Q+F I +
Sbjct: 362 SHHRQTMLFSATMTDEVKDLASVSLKNPVRIFV----NSNTDVAPFLRQEFVRIRPNREG 417
Query: 269 KXXXXXXXXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEE 328
++FT T A R+ + L G++ L+ L Q RL L
Sbjct: 418 DREAIVAALLTRTFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRR 477
Query: 329 FNAGLFDYLIATD 341
F D L+ATD
Sbjct: 478 FKDEQIDILVATD 490
Score = 151 (58.2 bits), Expect = 4.0e-40, Sum P(2) = 4.0e-40
Identities = 39/108 (36%), Positives = 57/108 (52%)
Query: 378 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGD 437
RG+D + V TVINF MP YVHR+GRT RA G SVSLV +E K+ +EI
Sbjct: 494 RGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEEERKMLKEIVKAA-- 551
Query: 438 DENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLR 485
+ + A +L Q+ + R + E + K V + E+ ++L+
Sbjct: 552 ----KAPVKAR--ILPQDVILKFRDKIEKMEKDVYAVLQLEAEEKELQ 593
>UNIPROTKB|E1C187 [details] [associations]
symbol:DDX27 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00550000074997 OMA:TRTFTDH EMBL:AADN02019007
IPI:IPI00822640 Ensembl:ENSGALT00000011297 ArrayExpress:E1C187
Uniprot:E1C187
Length = 759
Score = 329 (120.9 bits), Expect = 4.5e-40, Sum P(3) = 4.5e-40
Identities = 103/314 (32%), Positives = 150/314 (47%)
Query: 31 LGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGS-GKTFAYLLPLLHRLF 89
+ L L+ A+ G ++PT IQ+A IP+ L GKD+ A A TG+ GKT A++LP+L RL
Sbjct: 185 MNLSRPLLKAITALGFKQPTPIQKACIPVGLLGKDICACAATGTVGKTAAFILPVLERLI 244
Query: 90 NESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAA 149
+ P+ LVLVPTREL QV+S L + L V + AA
Sbjct: 245 YK--PRQAPITRVLVLVPTRELGIQVHSVTKQLAQFSSVTTCLAV----GGLDVKTQEAA 298
Query: 150 LAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLKALSAV 208
L PDI+IATPG + L SF S+++L+LDEAD +L +E+ +K + +
Sbjct: 299 LRSGPDILIATPGRLIDHLHN----CPSFHLSSVEVLILDEADRMLDEYFEEQMKEIIRL 354
Query: 209 IPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFW-ISCSER 267
R Q +L SAT + +V L + L NP + + + +V P Q+F I +
Sbjct: 355 CSRHRQTMLFSATMTEEVKDLASVSLKNPTRIFV----NSNTDVAPFLRQEFIRIRPNRE 410
Query: 268 DKXXXXXXXXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILE 327
++FT T A R+ + L G++ L+ L Q RL L
Sbjct: 411 GDREAIVSALLTRTFPDHVMLFTQTKKQAHRMHILLGLMGLRVGELHGNLSQAQRLEALR 470
Query: 328 EFNAGLFDYLIATD 341
F D L+ATD
Sbjct: 471 RFKDEQIDILVATD 484
Score = 159 (61.0 bits), Expect = 4.5e-40, Sum P(3) = 4.5e-40
Identities = 41/122 (33%), Positives = 60/122 (49%)
Query: 378 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGD 437
RG+D + V TVINF MP YVHR+GRT RA G SVSLV +E K+ +EI
Sbjct: 488 RGLDIEGVKTVINFTMPNTTKHYVHRVGRTARAGRAGRSVSLVGEEERKMLKEIVKAA-- 545
Query: 438 DENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAH 497
+ + A +L Q+ + R + E++ K V + E ++++ K K
Sbjct: 546 ----KTPVKAR--ILPQDVILKFREKIENLEKDVYAVLCLEREEREMQQSEAQINKAKKQ 599
Query: 498 FE 499
E
Sbjct: 600 LE 601
Score = 51 (23.0 bits), Expect = 4.5e-40, Sum P(3) = 4.5e-40
Identities = 23/78 (29%), Positives = 38/78 (48%)
Query: 540 KMVKLARAAMGNKNSSRRQGPRRKFRKS--DP---------LKSFSAEPT----KRAGKG 584
+ VK ARA + ++ +GP+RK + S D LK + A P+ KR G
Sbjct: 683 RRVKRARALPEEEPAAAPKGPKRKKKVSVFDEELTNTSRKALKQYRAGPSFEDRKRLGMA 742
Query: 585 RMKREGRNGDDTGKHKKK 602
+ +R+G N ++K+K
Sbjct: 743 Q-RRKGGNFKSKSRYKRK 759
Score = 42 (19.8 bits), Expect = 3.9e-39, Sum P(3) = 3.9e-39
Identities = 14/48 (29%), Positives = 24/48 (50%)
Query: 534 KTQEACKMVKLARAAMGNKNSSRRQGPRRKFRKSDPLKSFSAEPTKRA 581
+T+E K KLA+A + R + R+KF + D + P +R+
Sbjct: 618 QTREERKKEKLAKALQEFDLALRGKKKRKKFMQ-DTQRKAQMTPEERS 664
>UNIPROTKB|A1A4H6 [details] [associations]
symbol:DDX27 "Probable ATP-dependent RNA helicase DDX27"
species:9913 "Bos taurus" [GO:0005634 "nucleus" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
EMBL:BC126497 IPI:IPI00734460 RefSeq:NP_001073740.1 UniGene:Bt.2644
ProteinModelPortal:A1A4H6 PRIDE:A1A4H6 Ensembl:ENSBTAT00000057089
GeneID:514567 KEGG:bta:514567 CTD:55661
GeneTree:ENSGT00550000074997 HOGENOM:HOG000265456
HOVERGEN:HBG106162 KO:K13181 OMA:TRTFTDH NextBio:20871404
Uniprot:A1A4H6
Length = 765
Score = 345 (126.5 bits), Expect = 5.2e-40, Sum P(3) = 5.2e-40
Identities = 105/313 (33%), Positives = 151/313 (48%)
Query: 31 LGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFN 90
+ L L+ A+ G ++PT IQ+A IP+ L GKD+ A A TG+GKT A+ LP+L RL
Sbjct: 192 MNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVLERLIY 251
Query: 91 ESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAAL 150
+ P+ LVLVPTREL QV+S L + C L V L + LRAA
Sbjct: 252 K--PRQAPVTRVLVLVPTRELGIQVHSVTKQLAQFCSITTCLAVGGLDVKSQEAALRAA- 308
Query: 151 AGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLKALSAVI 209
PDI+IATPG + L SF S+++L+LDEAD +L +E+ +K + +
Sbjct: 309 ---PDILIATPGRLIDHLHN----CPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMC 361
Query: 210 PRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFW-ISCSERD 268
Q +L SAT + +V L + L NP + + + +V P Q+F I +
Sbjct: 362 SHHRQTMLFSATMTDEVKDLASVSLKNPVRIFV----NSNTDVAPFLRQEFIRIRPNREG 417
Query: 269 KXXXXXXXXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEE 328
++FT T A R+ + L G++ L+ L Q RL L
Sbjct: 418 DREAIVAALLMRTFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRR 477
Query: 329 FNAGLFDYLIATD 341
F D L+ATD
Sbjct: 478 FKDEQIDILVATD 490
Score = 150 (57.9 bits), Expect = 5.2e-40, Sum P(3) = 5.2e-40
Identities = 30/54 (55%), Positives = 36/54 (66%)
Query: 378 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEI 431
RG+D + V TVINF MP YVHR+GRT RA G SVSLV +E K+ +EI
Sbjct: 494 RGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEEERKMLKEI 547
Score = 41 (19.5 bits), Expect = 2.9e-06, Sum P(3) = 2.9e-06
Identities = 11/36 (30%), Positives = 19/36 (52%)
Query: 342 DTQTKEKDQSDEGGHVDSRKSK---KHPKAKLDSEF 374
+ +T +D+ +EG V RK K K+ A + +F
Sbjct: 20 EPETDSEDEEEEGPIVLGRKQKALQKNRSADFNPDF 55
Score = 40 (19.1 bits), Expect = 5.2e-40, Sum P(3) = 5.2e-40
Identities = 14/44 (31%), Positives = 22/44 (50%)
Query: 534 KTQEACKMVKLARAAMGNKNSSRRQGPRRKFRKSDPLKS-FSAE 576
+T+E K K+A+A + R + R+KF K K +AE
Sbjct: 623 QTKEERKKEKIAKALQEFDLALRGKKKRKKFMKEAKKKGEMTAE 666
>ASPGD|ASPL0000062195 [details] [associations]
symbol:AN10125 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005730
"nucleolus" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:BN001308 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
OMA:RIRKRDH EnsemblFungi:CADANIAT00001822 Uniprot:C8VQD7
Length = 814
Score = 357 (130.7 bits), Expect = 9.3e-40, Sum P(2) = 9.3e-40
Identities = 102/309 (33%), Positives = 154/309 (49%)
Query: 37 LVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRL-FNESS-P 94
++ L PT IQQ +IP+ L GKD+V A TGSGKT A+++P+L RL F P
Sbjct: 309 ILRGLAAVNFTNPTPIQQKTIPVALLGKDIVGSAVTGSGKTAAFVVPILERLLFRPRKVP 368
Query: 95 KSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAALAGPP 154
S++A +L+PTREL Q Y+ L + QL + L P
Sbjct: 369 TSRVA----ILMPTRELAVQCYNVATKLATY----TDITFCQLVGGFSLREQENVLKKRP 420
Query: 155 DIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLKALSAVIPRGC 213
D++IATPG + + + S SF+ D+L+ILVLDEAD +L G+ D+L + IP+
Sbjct: 421 DVIIATPG---RFIDH-MRNSASFTVDTLEILVLDEADRMLEDGFADELNEILTTIPKSR 476
Query: 214 QCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFW-ISCSERDKXXX 272
Q +L SAT + VDKL ++ L+ P L + D K VQ+F + DK
Sbjct: 477 QTMLFSATMTDSVDKLIRVGLNRPVRLMV----DTKKNTAVTLVQEFVRLRPGREDKRLG 532
Query: 273 XXXXXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAG 332
+ ++F A R+++ G+K+A L+ + Q R+ +E F G
Sbjct: 533 YLLHLCKEVYTGRVIVFFRQKKEAHRVRIVFGLLGLKAAELHGSMSQEQRIKSVESFRDG 592
Query: 333 LFDYLIATD 341
++L+ATD
Sbjct: 593 NVNFLLATD 601
Score = 137 (53.3 bits), Expect = 9.3e-40, Sum P(2) = 9.3e-40
Identities = 33/123 (26%), Positives = 64/123 (52%)
Query: 378 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGD 437
RG+D K V TVIN+E PQ+ YVHR+GRT RA +G + ++ + + K+ +K+ V
Sbjct: 605 RGLDIKGVETVINYEAPQSHEIYVHRVGRTARAGRSGRACTIAAEPDRKV---VKAAVKA 661
Query: 438 DENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRN---EILNSEKL 494
+ + + I++ ++ + + +A+D+ + + + E + L ++ E L
Sbjct: 662 GKAQGAKIVSR--VVDPSVADDWASKAKDMEEEIDAVLEEEKLEKQLAQAEMQVTKGENL 719
Query: 495 KAH 497
H
Sbjct: 720 IKH 722
Score = 43 (20.2 bits), Expect = 4.1e-05, Sum P(2) = 4.1e-05
Identities = 7/20 (35%), Positives = 14/20 (70%)
Query: 340 TDDTQTKEKDQSDEGGHVDS 359
+DD + +E+D ++ G +DS
Sbjct: 85 SDDEEEEEQDAGEDDGALDS 104
>TIGR_CMR|SO_3783 [details] [associations]
symbol:SO_3783 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0006139
"nucleobase-containing compound metabolic process" evidence=ISS]
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:AE014299
GenomeReviews:AE014299_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
HSSP:Q58083 HOGENOM:HOG000268807 KO:K11927 OMA:HLIKQHN
RefSeq:NP_719320.1 ProteinModelPortal:Q8EAV8 GeneID:1171430
KEGG:son:SO_3783 PATRIC:23527244 ProtClustDB:CLSK2393932
Uniprot:Q8EAV8
Length = 535
Score = 327 (120.2 bits), Expect = 3.1e-39, Sum P(2) = 3.1e-39
Identities = 101/311 (32%), Positives = 155/311 (49%)
Query: 31 LGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFN 90
LGL L A++++G P+ IQ +IP +L GKDV+A A+TG+GKT + LPLL L
Sbjct: 6 LGLSAPLQKAVSEQGYDTPSPIQAQAIPAVLTGKDVMAAAQTGTGKTAGFTLPLLELLAK 65
Query: 91 ESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAAL 150
KS ALVL PTREL QV V E + L+ + +P + L
Sbjct: 66 GHKAKSGQT-RALVLTPTRELAAQVGESV----ETYGKYLPLRSAVVFGGVPINPQINKL 120
Query: 151 AGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIP 210
D+++ATPG + L V Q+ + L+ILVLDEAD +L G+ D+K + A++P
Sbjct: 121 RHGVDVLVATPG---RLLDL-VQQNAVKFNQLEILVLDEADRMLDMGFIRDIKKILALLP 176
Query: 211 RGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKX 270
Q L+ SAT S ++ +L K ++++P E+ V+Q WI ++ +
Sbjct: 177 AKRQNLMFSATFSDEIRELAKGLVNHPV-----EISVTPRNAAATTVKQ-WICPVDKTQK 230
Query: 271 XXXXXXXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFN 330
++ L+F+ T A RL L + I +A ++ Q +R L +F
Sbjct: 231 SALLIQLIKQENWQQVLVFSRTKHGANRLAKSLIQAEISAAAIHGNKSQGARTKALADFK 290
Query: 331 AGLFDYLIATD 341
+G L+ATD
Sbjct: 291 SGEVRVLVATD 301
Score = 155 (59.6 bits), Expect = 3.1e-39, Sum P(2) = 3.1e-39
Identities = 57/220 (25%), Positives = 92/220 (41%)
Query: 378 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGD 437
RG+D + V+NF++P YVHRIGRTGRA TG +VSLVS +E+K+ ++I+ +
Sbjct: 305 RGLDIDQLPQVVNFDLPNVPEDYVHRIGRTGRAGATGQAVSLVSSEEIKLLKDIERLINR 364
Query: 438 D-ENEDSNIIAPFPLLAQNAV--ESLRYRAEDVA-----KSVTKIAVRESRAQDLRNEIL 489
E ++ +P L + + + + + VA +S K A R +D +
Sbjct: 365 VLERQEVEGFSPVHALPETTLNPQGKDTKVKAVANHRKHRSAGKPAPRSGSGRDTQGNRE 424
Query: 490 NSEKLKAHFEVNPXXXXXXXXXXXXXXXPPASH-LRD-------VPDYLLDAKTQEACKM 541
NS++ + N P + H RD AK +
Sbjct: 425 NSQRQNSASSRNSNEHNNTEAAVARSPKPKSKHPQRDGGTANSATAGNNAKAKPHSGAQQ 484
Query: 542 VKLARAAMGNKNSSRRQGPRRKFRKSDPLKSFSAEPTKRA 581
A + + N RRQ + K R K S +P + +
Sbjct: 485 RSHAERSEKSNNDGRRQ-EQPKGRNPQSAKPASNQPKQHS 523
>CGD|CAL0004095 [details] [associations]
symbol:TIF species:5476 "Candida albicans" [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0006413
"translational initiation" evidence=ISS] [GO:0005829 "cytosol"
evidence=IEA] [GO:0005886 "plasma membrane" evidence=IEA]
[GO:0016281 "eukaryotic translation initiation factor 4F complex"
evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 CGD:CAL0004095 GO:GO:0005524
GO:GO:0005737 GO:GO:0003743 EMBL:AACQ01000045 EMBL:AACQ01000042
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 KO:K03257
EMBL:D84472 RefSeq:XP_718147.1 RefSeq:XP_718416.1
ProteinModelPortal:P87206 STRING:P87206 PRIDE:P87206 GeneID:3639917
GeneID:3640190 KEGG:cal:CaO19.10834 KEGG:cal:CaO19.3324
Uniprot:P87206
Length = 397
Score = 318 (117.0 bits), Expect = 3.9e-39, Sum P(2) = 3.9e-39
Identities = 99/313 (31%), Positives = 166/313 (53%)
Query: 31 LGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFN 90
L L +V + G + P+ IQQ +I I EG+DV+A+A++G+GKT + + L R+ N
Sbjct: 28 LNLKPNIVRGIFGYGYETPSAIQQRAILPITEGRDVLAQAQSGTGKTATFTISALQRI-N 86
Query: 91 ESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAAL 150
E+ A AL+L PTREL Q+ + + A+ K V + +SM + D+ A
Sbjct: 87 ENEK----ATQALILAPTRELALQIKNVITAIGLYLKVTVHASIGG--TSM-SDDIEAFR 139
Query: 151 AGPPDIVIATPGCMPKCLSTGVLQSKSF-SDSLKILVLDEADLLLSYGYEDDLKALSAVI 209
+G IV+ TPG + L +++ + F +D +K+ +LDEAD +LS G+++ + + ++
Sbjct: 140 SGV-QIVVGTPG---RVLD--MIERRYFKTDKVKMFILDEADEMLSSGFKEQIYNIFRLL 193
Query: 210 PRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDK 269
P Q +L+SAT DV ++ ++NP + + KDE+ + ++QF+I+ D
Sbjct: 194 PETTQIVLLSATMPQDVLEVTTKFMNNPVRILVK-----KDELTLEGIKQFYINVELEDY 248
Query: 270 XXXXXXXXXXXXVQKKALIFTNTID-MAFRLKLFLEKFGIKSAILNAELPQNSRLHILEE 328
+A+IF NT + F E+ SAI +A+LPQ R I++E
Sbjct: 249 KFDCLCDLYDSISVTQAVIFCNTRSKVEFLTNKLREQHFTVSAI-HADLPQAERDTIMKE 307
Query: 329 FNAGLFDYLIATD 341
F +G LI+TD
Sbjct: 308 FRSGSSRILISTD 320
Score = 127 (49.8 bits), Expect = 3.9e-39, Sum P(2) = 3.9e-39
Identities = 23/59 (38%), Positives = 37/59 (62%)
Query: 376 VVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSF 434
+ RGID + V VIN+++P N Y+HRIGR GR G +++ V+ ++ + EI+ F
Sbjct: 322 LARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTDRDVGMMREIEKF 380
>UNIPROTKB|P87206 [details] [associations]
symbol:TIF1 "ATP-dependent RNA helicase eIF4A"
species:237561 "Candida albicans SC5314" [GO:0003743 "translation
initiation factor activity" evidence=ISS] [GO:0006413
"translational initiation" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 CGD:CAL0004095
GO:GO:0005524 GO:GO:0005737 GO:GO:0003743 EMBL:AACQ01000045
EMBL:AACQ01000042 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K03257 EMBL:D84472 RefSeq:XP_718147.1 RefSeq:XP_718416.1
ProteinModelPortal:P87206 STRING:P87206 PRIDE:P87206 GeneID:3639917
GeneID:3640190 KEGG:cal:CaO19.10834 KEGG:cal:CaO19.3324
Uniprot:P87206
Length = 397
Score = 318 (117.0 bits), Expect = 3.9e-39, Sum P(2) = 3.9e-39
Identities = 99/313 (31%), Positives = 166/313 (53%)
Query: 31 LGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFN 90
L L +V + G + P+ IQQ +I I EG+DV+A+A++G+GKT + + L R+ N
Sbjct: 28 LNLKPNIVRGIFGYGYETPSAIQQRAILPITEGRDVLAQAQSGTGKTATFTISALQRI-N 86
Query: 91 ESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAAL 150
E+ A AL+L PTREL Q+ + + A+ K V + +SM + D+ A
Sbjct: 87 ENEK----ATQALILAPTRELALQIKNVITAIGLYLKVTVHASIGG--TSM-SDDIEAFR 139
Query: 151 AGPPDIVIATPGCMPKCLSTGVLQSKSF-SDSLKILVLDEADLLLSYGYEDDLKALSAVI 209
+G IV+ TPG + L +++ + F +D +K+ +LDEAD +LS G+++ + + ++
Sbjct: 140 SGV-QIVVGTPG---RVLD--MIERRYFKTDKVKMFILDEADEMLSSGFKEQIYNIFRLL 193
Query: 210 PRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDK 269
P Q +L+SAT DV ++ ++NP + + KDE+ + ++QF+I+ D
Sbjct: 194 PETTQIVLLSATMPQDVLEVTTKFMNNPVRILVK-----KDELTLEGIKQFYINVELEDY 248
Query: 270 XXXXXXXXXXXXVQKKALIFTNTID-MAFRLKLFLEKFGIKSAILNAELPQNSRLHILEE 328
+A+IF NT + F E+ SAI +A+LPQ R I++E
Sbjct: 249 KFDCLCDLYDSISVTQAVIFCNTRSKVEFLTNKLREQHFTVSAI-HADLPQAERDTIMKE 307
Query: 329 FNAGLFDYLIATD 341
F +G LI+TD
Sbjct: 308 FRSGSSRILISTD 320
Score = 127 (49.8 bits), Expect = 3.9e-39, Sum P(2) = 3.9e-39
Identities = 23/59 (38%), Positives = 37/59 (62%)
Query: 376 VVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSF 434
+ RGID + V VIN+++P N Y+HRIGR GR G +++ V+ ++ + EI+ F
Sbjct: 322 LARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTDRDVGMMREIEKF 380
>CGD|CAL0000864 [details] [associations]
symbol:DRS1 species:5476 "Candida albicans" [GO:0035690
"cellular response to drug" evidence=IMP] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0030687 "preribosome, large subunit precursor"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 CGD:CAL0000864 GO:GO:0005524
GO:GO:0005730 GO:GO:0042254 GO:GO:0003723 GO:GO:0035690
EMBL:AACQ01000032 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K13181 RefSeq:XP_719395.1 ProteinModelPortal:Q5ACK7
STRING:Q5ACK7 GeneID:3639045 KEGG:cal:CaO19.7635 Uniprot:Q5ACK7
Length = 613
Score = 362 (132.5 bits), Expect = 5.0e-39, Sum P(3) = 5.0e-39
Identities = 105/297 (35%), Positives = 154/297 (51%)
Query: 48 KPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVP 107
KPT IQ ASIP+ L GKD+VA A+TGSGKT AY++P++ RL + S +K+ ++L P
Sbjct: 152 KPTPIQSASIPIALLGKDIVAGAQTGSGKTGAYMIPIIERLLYKPSTSTKV----IILTP 207
Query: 108 TRELCQQVYSEVMALIELCKG-QVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPK 166
TREL QVY L + L V L L+ PDIVIATPG
Sbjct: 208 TRELALQVYEFGKKLSHHVNNLNIGLAVGGLNLRQQEEQLKTR----PDIVIATPGR--- 260
Query: 167 CLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLKALSAVIPRGC-QCLLMSATSSS 224
L + S SFS +++LV+DEAD +L G++D+L + ++IP+ Q LL SAT ++
Sbjct: 261 -LIDHIRNSPSFSVQDIQVLVIDEADRMLEEGFQDELTEILSLIPKHKRQTLLFSATMNT 319
Query: 225 DVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKXXXXXXXXXXXXVQK 284
+ L +L L P + + D V K +QQF + +RD+ V
Sbjct: 320 RIQDLIQLSLQKPVRIMI----DPPKSVASKLLQQF-VRIRKRDQLKPALLYQLLKGVSS 374
Query: 285 KALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATD 341
+ ++F + A RL++ L G+K + L+ L Q RL ++ F + LI TD
Sbjct: 375 RVVVFVARKETAHRLRIVLGLLGLKVSELHGALTQEQRLQNVKNFKSLEVPVLICTD 431
Score = 108 (43.1 bits), Expect = 5.0e-39, Sum P(3) = 5.0e-39
Identities = 19/43 (44%), Positives = 28/43 (65%)
Query: 378 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLV 420
RG+D + VIN++MP+ Y+HR+GRT RA G S++ V
Sbjct: 435 RGLDIPKIELVINYDMPKTFEIYLHRVGRTARAGRDGTSITFV 477
Score = 41 (19.5 bits), Expect = 5.0e-39, Sum P(3) = 5.0e-39
Identities = 12/45 (26%), Positives = 21/45 (46%)
Query: 560 PRRKFRKSDPLKSFSAEPTKRAGKGRMKREGRNGDDTGKHKKKKS 604
P+R + K + ++ + K K R E R D+ +KK K+
Sbjct: 557 PKRTWFKGEVMEQLTKHGKKVNSKKRKANEVRK-DEGRSYKKTKT 600
>UNIPROTKB|Q5ACK7 [details] [associations]
symbol:DRS1 "ATP-dependent RNA helicase DRS1"
species:237561 "Candida albicans SC5314" [GO:0035690 "cellular
response to drug" evidence=IMP] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 CGD:CAL0000864
GO:GO:0005524 GO:GO:0005730 GO:GO:0042254 GO:GO:0003723
GO:GO:0035690 EMBL:AACQ01000032 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K13181 RefSeq:XP_719395.1
ProteinModelPortal:Q5ACK7 STRING:Q5ACK7 GeneID:3639045
KEGG:cal:CaO19.7635 Uniprot:Q5ACK7
Length = 613
Score = 362 (132.5 bits), Expect = 5.0e-39, Sum P(3) = 5.0e-39
Identities = 105/297 (35%), Positives = 154/297 (51%)
Query: 48 KPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVP 107
KPT IQ ASIP+ L GKD+VA A+TGSGKT AY++P++ RL + S +K+ ++L P
Sbjct: 152 KPTPIQSASIPIALLGKDIVAGAQTGSGKTGAYMIPIIERLLYKPSTSTKV----IILTP 207
Query: 108 TRELCQQVYSEVMALIELCKG-QVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPK 166
TREL QVY L + L V L L+ PDIVIATPG
Sbjct: 208 TRELALQVYEFGKKLSHHVNNLNIGLAVGGLNLRQQEEQLKTR----PDIVIATPGR--- 260
Query: 167 CLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLKALSAVIPRGC-QCLLMSATSSS 224
L + S SFS +++LV+DEAD +L G++D+L + ++IP+ Q LL SAT ++
Sbjct: 261 -LIDHIRNSPSFSVQDIQVLVIDEADRMLEEGFQDELTEILSLIPKHKRQTLLFSATMNT 319
Query: 225 DVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKXXXXXXXXXXXXVQK 284
+ L +L L P + + D V K +QQF + +RD+ V
Sbjct: 320 RIQDLIQLSLQKPVRIMI----DPPKSVASKLLQQF-VRIRKRDQLKPALLYQLLKGVSS 374
Query: 285 KALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATD 341
+ ++F + A RL++ L G+K + L+ L Q RL ++ F + LI TD
Sbjct: 375 RVVVFVARKETAHRLRIVLGLLGLKVSELHGALTQEQRLQNVKNFKSLEVPVLICTD 431
Score = 108 (43.1 bits), Expect = 5.0e-39, Sum P(3) = 5.0e-39
Identities = 19/43 (44%), Positives = 28/43 (65%)
Query: 378 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLV 420
RG+D + VIN++MP+ Y+HR+GRT RA G S++ V
Sbjct: 435 RGLDIPKIELVINYDMPKTFEIYLHRVGRTARAGRDGTSITFV 477
Score = 41 (19.5 bits), Expect = 5.0e-39, Sum P(3) = 5.0e-39
Identities = 12/45 (26%), Positives = 21/45 (46%)
Query: 560 PRRKFRKSDPLKSFSAEPTKRAGKGRMKREGRNGDDTGKHKKKKS 604
P+R + K + ++ + K K R E R D+ +KK K+
Sbjct: 557 PKRTWFKGEVMEQLTKHGKKVNSKKRKANEVRK-DEGRSYKKTKT 600
>ZFIN|ZDB-GENE-031001-8 [details] [associations]
symbol:ddx27 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
27" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-031001-8 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 CTD:55661 HOGENOM:HOG000265456
HOVERGEN:HBG106162 KO:K13181 EMBL:AY648729 IPI:IPI00501087
RefSeq:NP_001002869.1 UniGene:Dr.76523 ProteinModelPortal:Q6DRN0
PRIDE:Q6DRN0 GeneID:378844 KEGG:dre:378844 InParanoid:Q6DRN0
NextBio:20813841 ArrayExpress:Q6DRN0 Bgee:Q6DRN0 Uniprot:Q6DRN0
Length = 776
Score = 340 (124.7 bits), Expect = 6.2e-39, Sum P(2) = 6.2e-39
Identities = 102/313 (32%), Positives = 152/313 (48%)
Query: 31 LGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFN 90
+ L L+ A++ G ++PT IQ+A +P+ L GKD+ A A TG+GKT A++LP+L RL
Sbjct: 206 MNLSRPLLKAISTMGFKQPTPIQKACVPVGLLGKDICACAATGTGKTAAFMLPVLERLIY 265
Query: 91 ESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAAL 150
+ P+ LVLVPTREL QV++ L + L V + AAL
Sbjct: 266 K--PRETQVTRVLVLVPTRELGIQVHTVARQLAQFTTISTCLAV----GGLDLKSQEAAL 319
Query: 151 AGPPDIVIATPGCMPKCLSTGVLQSKSFSDS-LKILVLDEADLLLSYGYEDDLKALSAVI 209
PD++IATPG + L + SF S ++IL+LDEAD +L +E+ +K + +
Sbjct: 320 RAGPDVLIATPGRLIDHLHN----TPSFELSQIEILILDEADRMLDEYFEEQMKEIIRMC 375
Query: 210 PRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFW-ISCSERD 268
Q +L SAT S +V L + L P + + + +V P Q+F I ++
Sbjct: 376 AYQRQTMLFSATMSEEVKDLASVSLKQPVRIFV----NSNTDVAPYLRQEFVRIRPNKEG 431
Query: 269 KXXXXXXXXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEE 328
Q ++FT T A R+ + L G+K L+ L Q RL L
Sbjct: 432 DREAIVAALLTRTFQDHVMLFTQTKKQAHRMHILLGLMGLKVGELHGNLSQTQRLESLRR 491
Query: 329 FNAGLFDYLIATD 341
F D L+ATD
Sbjct: 492 FKDEQIDILVATD 504
Score = 148 (57.2 bits), Expect = 6.2e-39, Sum P(2) = 6.2e-39
Identities = 30/54 (55%), Positives = 35/54 (64%)
Query: 378 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEI 431
RG+D + V TVINF MP YVHR+GRT RA G SVSLV E K+ +EI
Sbjct: 508 RGLDIEGVKTVINFTMPNTVKHYVHRVGRTARAGKVGRSVSLVGETERKMLKEI 561
Score = 38 (18.4 bits), Expect = 7.8e-06, Sum P(2) = 7.8e-06
Identities = 8/22 (36%), Positives = 13/22 (59%)
Query: 54 QASIPLILEGKDVVARAKTGSG 75
+A P++L+ K+ A GSG
Sbjct: 24 EADQPIVLKSKEKQALKARGSG 45
>GENEDB_PFALCIPARUM|PFL2010c [details] [associations]
symbol:PFL2010c "DEAD/DEAH box helicase,
putative" species:5833 "Plasmodium falciparum" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:AE014188
GO:GO:0016070 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 InterPro:IPR014014 PROSITE:PS51195 KO:K01509
RefSeq:XP_001350806.2 ProteinModelPortal:Q8I511 IntAct:Q8I511
MINT:MINT-1630263 EnsemblProtists:PFL2010c:mRNA GeneID:811454
KEGG:pfa:PFL2010c EuPathDB:PlasmoDB:PF3D7_1241800
HOGENOM:HOG000283512 ProtClustDB:CLSZ2848517 Uniprot:Q8I511
Length = 878
Score = 258 (95.9 bits), Expect = 6.4e-39, Sum P(3) = 6.4e-39
Identities = 80/221 (36%), Positives = 121/221 (54%)
Query: 33 LDLRLVHALNKK-GIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRL--F 89
LD+RL AL Q PT+IQ+ SI IL G DV+ +KTGSGKT AYL+P++H L F
Sbjct: 118 LDVRLRKALLYLFKYQHPTIIQKMSICKILNGHDVIISSKTGSGKTMAYLIPVVHNLIKF 177
Query: 90 N-ESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRA 148
N K +++ PT ELC Q+Y +LC LK + +T + ++
Sbjct: 178 NLNEKDHLKFFYKCIIICPTEELCLQIYDVTK---KLC---TYLKDI-ITVN---HNVNN 227
Query: 149 ALAGPPDIVIATPGCMPKCLSTGVLQSKSFSD-----SLKILVLDEADLLLSYGYEDDLK 203
P I+I+TP K L T +++ K ++ +LKIL+LDEAD+L + ++ LK
Sbjct: 228 TFYEHPTILISTP----KDLCTHIIEKKKKNNLDILMNLKILILDEADVLHTQEFQSYLK 283
Query: 204 ALSAVIPRGC----QCLLMSATSSSDVDKLKKLILHNP-YI 239
L++ +P+ Q ++ SAT ++ + KL LHNP Y+
Sbjct: 284 TLTSYLPKKFNKKYQIVMASATLKRNILEKTKLFLHNPIYV 324
Score = 181 (68.8 bits), Expect = 6.4e-39, Sum P(3) = 6.4e-39
Identities = 55/168 (32%), Positives = 79/168 (47%)
Query: 341 DDTQTKEKDQSDEGG----HVDSRKSKKHPKAKLDSE--FGVVRGIDFKNVHTVINFEMP 394
+D QT + SD + D K KL+ E F RG+DF +V V+NF+MP
Sbjct: 551 NDDQTLNEPLSDNNSCRTYNSDDENEKTDDTTKLNEEKDFLYSRGLDFYDVKCVVNFDMP 610
Query: 395 QNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDDENEDSNIIAPFPLLAQ 454
++ ++HRIGRT R N G +S V+ E+ E K F+ ED NI Q
Sbjct: 611 SDSETFIHRIGRTCRLNNKGKCISFVN--ELNYGE--KEFL-QKLIEDKNICTMIKKNIQ 665
Query: 455 -NAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVN 501
N VE RYR E T ++ +++ + L S++LK F N
Sbjct: 666 YNIVEKYRYRVESTLNKCTNKKIKLFIQKEILYQSLKSKELKDFFNTN 713
Score = 103 (41.3 bits), Expect = 6.4e-39, Sum P(3) = 6.4e-39
Identities = 22/54 (40%), Positives = 33/54 (61%)
Query: 285 KALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLI 338
K++IFT TI A+++K+FL + S+ILN P R +I+ FN F +LI
Sbjct: 404 KSIIFTTTIHDAYKIKIFLTYLNVSSSILNPNHPILIRQNIISAFNNSKFHFLI 457
>UNIPROTKB|Q8I511 [details] [associations]
symbol:PFL2010c "DEAD/DEAH box helicase, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0005575
"cellular_component" evidence=ND] [GO:0016070 "RNA metabolic
process" evidence=ISS] InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0003676 EMBL:AE014188 GO:GO:0016070
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
InterPro:IPR014014 PROSITE:PS51195 KO:K01509 RefSeq:XP_001350806.2
ProteinModelPortal:Q8I511 IntAct:Q8I511 MINT:MINT-1630263
EnsemblProtists:PFL2010c:mRNA GeneID:811454 KEGG:pfa:PFL2010c
EuPathDB:PlasmoDB:PF3D7_1241800 HOGENOM:HOG000283512
ProtClustDB:CLSZ2848517 Uniprot:Q8I511
Length = 878
Score = 258 (95.9 bits), Expect = 6.4e-39, Sum P(3) = 6.4e-39
Identities = 80/221 (36%), Positives = 121/221 (54%)
Query: 33 LDLRLVHALNKK-GIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRL--F 89
LD+RL AL Q PT+IQ+ SI IL G DV+ +KTGSGKT AYL+P++H L F
Sbjct: 118 LDVRLRKALLYLFKYQHPTIIQKMSICKILNGHDVIISSKTGSGKTMAYLIPVVHNLIKF 177
Query: 90 N-ESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRA 148
N K +++ PT ELC Q+Y +LC LK + +T + ++
Sbjct: 178 NLNEKDHLKFFYKCIIICPTEELCLQIYDVTK---KLC---TYLKDI-ITVN---HNVNN 227
Query: 149 ALAGPPDIVIATPGCMPKCLSTGVLQSKSFSD-----SLKILVLDEADLLLSYGYEDDLK 203
P I+I+TP K L T +++ K ++ +LKIL+LDEAD+L + ++ LK
Sbjct: 228 TFYEHPTILISTP----KDLCTHIIEKKKKNNLDILMNLKILILDEADVLHTQEFQSYLK 283
Query: 204 ALSAVIPRGC----QCLLMSATSSSDVDKLKKLILHNP-YI 239
L++ +P+ Q ++ SAT ++ + KL LHNP Y+
Sbjct: 284 TLTSYLPKKFNKKYQIVMASATLKRNILEKTKLFLHNPIYV 324
Score = 181 (68.8 bits), Expect = 6.4e-39, Sum P(3) = 6.4e-39
Identities = 55/168 (32%), Positives = 79/168 (47%)
Query: 341 DDTQTKEKDQSDEGG----HVDSRKSKKHPKAKLDSE--FGVVRGIDFKNVHTVINFEMP 394
+D QT + SD + D K KL+ E F RG+DF +V V+NF+MP
Sbjct: 551 NDDQTLNEPLSDNNSCRTYNSDDENEKTDDTTKLNEEKDFLYSRGLDFYDVKCVVNFDMP 610
Query: 395 QNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDDENEDSNIIAPFPLLAQ 454
++ ++HRIGRT R N G +S V+ E+ E K F+ ED NI Q
Sbjct: 611 SDSETFIHRIGRTCRLNNKGKCISFVN--ELNYGE--KEFL-QKLIEDKNICTMIKKNIQ 665
Query: 455 -NAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVN 501
N VE RYR E T ++ +++ + L S++LK F N
Sbjct: 666 YNIVEKYRYRVESTLNKCTNKKIKLFIQKEILYQSLKSKELKDFFNTN 713
Score = 103 (41.3 bits), Expect = 6.4e-39, Sum P(3) = 6.4e-39
Identities = 22/54 (40%), Positives = 33/54 (61%)
Query: 285 KALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLI 338
K++IFT TI A+++K+FL + S+ILN P R +I+ FN F +LI
Sbjct: 404 KSIIFTTTIHDAYKIKIFLTYLNVSSSILNPNHPILIRQNIISAFNNSKFHFLI 457
>UNIPROTKB|A4QYM6 [details] [associations]
symbol:DRS1 "ATP-dependent RNA helicase DRS1"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
EMBL:CM001233 GO:GO:0042254 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 KO:K13181 RefSeq:XP_003712922.1
ProteinModelPortal:A4QYM6 STRING:A4QYM6 GeneID:2683645
KEGG:mgr:MGG_07718 OrthoDB:EOG4B01XM Uniprot:A4QYM6
Length = 790
Score = 349 (127.9 bits), Expect = 7.6e-39, Sum P(2) = 7.6e-39
Identities = 99/313 (31%), Positives = 156/313 (49%)
Query: 31 LGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFN 90
+ L ++ L G KPT IQ +IP+ L GKDVV A TGSGKT A+++P+L RL
Sbjct: 260 MSLSRPILRGLTSVGFAKPTPIQSKTIPIALMGKDVVGGAVTGSGKTAAFVVPILERLLY 319
Query: 91 ESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAAL 150
PK ++L PTREL Q ++ L + L V L+ + S+LR
Sbjct: 320 R--PKKVPTSRVVILAPTRELAIQCHAVATKLASHTDIKFCLAVGGLSLKVQESELRLR- 376
Query: 151 AGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLKALSAVI 209
PD++IATPG + + + S SF+ D+++ILVLDEAD +L G+ D+L + +
Sbjct: 377 ---PDVIIATPG---RFIDH-MRNSASFAVDTVEILVLDEADRMLEDGFADELNEILTTL 429
Query: 210 PRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFW-ISCSERD 268
P+ Q +L SAT +S VD L ++ L+ P L + D + + + Q+F + +
Sbjct: 430 PKSRQTMLFSATMTSSVDNLIRVGLNKPVRLMV----DSQKKTVVTLTQEFVRLRPGREE 485
Query: 269 KXXXXXXXXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEE 328
K ++ +IF +A ++ G+ A L+ + Q R+ +E
Sbjct: 486 KRMGYLVYLCKNLYTERVIIFFRQKKIAHHARIIFGLLGLSCAELHGSMSQIQRIQSVEA 545
Query: 329 FNAGLFDYLIATD 341
F G +L+ATD
Sbjct: 546 FRDGKVSFLLATD 558
Score = 137 (53.3 bits), Expect = 7.6e-39, Sum P(2) = 7.6e-39
Identities = 39/124 (31%), Positives = 60/124 (48%)
Query: 378 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVS-PDEMKIFEEIKSFVG 436
RG+D K V TVIN+E PQ+ YVHR+GRT RA +G +++L + PD + +K+
Sbjct: 562 RGLDIKGVDTVINYEAPQSLEIYVHRVGRTARAGRSGTAITLAAEPDRKVVKAAVKAGKA 621
Query: 437 DDENEDSNIIAPFPLLAQNA-VESLRYRAEDVAKSVTKIAVRESRAQDLR---NEILNSE 492
S II + A ++ L E V + + V ++R N I +
Sbjct: 622 QGAKISSRIIDAADADSWQAKIDELEDEVEAVMREEKEEKVLAQADMEMRKGENMIRYED 681
Query: 493 KLKA 496
+KA
Sbjct: 682 DIKA 685
>ASPGD|ASPL0000037981 [details] [associations]
symbol:AN2932 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005829 "cytosol"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 EMBL:BN001306 EMBL:AACD01000051 GO:GO:0003743
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 HOGENOM:HOG000268797 InterPro:IPR014014
PROSITE:PS51195 KO:K03257 OMA:TENDARQ RefSeq:XP_660536.1
PRIDE:Q5B948 GeneID:2874390 KEGG:ani:AN2932.2 OrthoDB:EOG4PG98F
Uniprot:Q5B948
Length = 398
Score = 304 (112.1 bits), Expect = 8.3e-39, Sum P(2) = 8.3e-39
Identities = 89/307 (28%), Positives = 158/307 (51%)
Query: 37 LVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKS 96
L+ + G ++P+ IQQ +I I++G DV+A+A++G+GKT + + L +L P
Sbjct: 36 LLRGVYAYGFERPSAIQQRAILPIVKGNDVIAQAQSGTGKTATFSISALQKL----DPNV 91
Query: 97 KLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDI 156
K A AL++ PTREL QQ+ V+A+ + +Q + + D+ A GP I
Sbjct: 92 K-ACQALIVAPTRELAQQIQKVVIAIGDFMN--IQCHAC-IGGTAVRDDMNALREGP-QI 146
Query: 157 VIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCL 216
V+ TPG + + VL++ D +K+ +LDEAD +LS G+ + + + ++P+ Q +
Sbjct: 147 VVGTPGRIHDMIQRRVLKT----DQMKMFILDEADEMLSRGFTEQIYDIFQLLPQSTQVV 202
Query: 217 LMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKXXXXXXX 276
L+SAT DV ++ + +P + + K E+ + ++QF+I+ + +
Sbjct: 203 LLSATMPQDVLEVTTKFMRDPVRILVK-----KQELTLEGIKQFYIAVEKEEWKLDTLSD 257
Query: 277 XXXXXVQKKALIFTNTIDMAFRL--KLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLF 334
+A+IF NT L KL F + + ++ ++ Q R I++EF +G
Sbjct: 258 LYETVTITQAVIFCNTRRKVDWLTDKLTARDFTVSA--MHGDMEQAQRDVIMKEFRSGSS 315
Query: 335 DYLIATD 341
LIATD
Sbjct: 316 RVLIATD 322
Score = 139 (54.0 bits), Expect = 8.3e-39, Sum P(2) = 8.3e-39
Identities = 24/59 (40%), Positives = 39/59 (66%)
Query: 376 VVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSF 434
+ RGID + V VIN+++P N Y+HRIGR GR G +++ V+ D++++ EI+ F
Sbjct: 324 LARGIDVQQVSLVINYDLPANRENYIHRIGRGGRFGRKGVAINFVTADDVRMMREIEQF 382
>UNIPROTKB|A4QVP2 [details] [associations]
symbol:TIF1 "ATP-dependent RNA helicase eIF4A"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0043581 "mycelium
development" evidence=IEP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
GO:GO:0003743 EMBL:CM001231 GO:GO:0043581 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 KO:K03257 OrthoDB:EOG4PG98F
RefSeq:XP_003711015.1 ProteinModelPortal:A4QVP2 SMR:A4QVP2
EnsemblFungi:MGG_04400T0 GeneID:2677872 KEGG:mgr:MGG_04400
Uniprot:A4QVP2
Length = 396
Score = 303 (111.7 bits), Expect = 1.1e-38, Sum P(2) = 1.1e-38
Identities = 86/313 (27%), Positives = 163/313 (52%)
Query: 31 LGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFN 90
+ L L+ + G ++P+ IQQ +I +++G DV+A+A++G+GKT + + +L ++
Sbjct: 28 MNLKSELLRGIYAYGFERPSAIQQRAIMPVIKGHDVIAQAQSGTGKTATFSISVLQKI-- 85
Query: 91 ESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAAL 150
+++ K AL+L PTREL QQ+ V+A+ + ++ + + D++A
Sbjct: 86 DTNVKQC---QALILAPTRELAQQIQKVVVAIGDFMN--IECHAC-IGGTSVRDDMKALQ 139
Query: 151 AGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIP 210
GP +V+ TPG + + L++ D +K+ VLDEAD +LS G+ + + + ++P
Sbjct: 140 DGP-QVVVGTPGRVHDMIQRRFLKT----DGMKMFVLDEADEMLSRGFTEQIYDIFQLLP 194
Query: 211 RGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKX 270
+ Q +L+SAT DV ++ + +P + + KDE+ + ++QF+I+ + +
Sbjct: 195 QSTQVVLLSATMPQDVLEVTTKFMRDPVRILVK-----KDELTLEGIKQFYIAVEKEEWK 249
Query: 271 XXXXXXXXXXXVQKKALIFTNTIDMAFRL--KLFLEKFGIKSAILNAELPQNSRLHILEE 328
+A+IF NT L KL F + + ++ ++ Q R I++E
Sbjct: 250 LDTLSDLYETVTITQAVIFCNTRRKVDWLTDKLTARDFTVSA--MHGDMDQAQRDLIMKE 307
Query: 329 FNAGLFDYLIATD 341
F +G LIATD
Sbjct: 308 FRSGSSRVLIATD 320
Score = 139 (54.0 bits), Expect = 1.1e-38, Sum P(2) = 1.1e-38
Identities = 24/59 (40%), Positives = 39/59 (66%)
Query: 376 VVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSF 434
+ RGID + V VIN+++P N Y+HRIGR GR G +++ V+ D++++ EI+ F
Sbjct: 322 LARGIDVQQVSLVINYDLPANRENYIHRIGRGGRFGRKGVAINFVTADDVRMMREIEQF 380
>TAIR|locus:2032910 [details] [associations]
symbol:RH36 "RNA helicase 36" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM;IDA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA;ISS]
[GO:0006364 "rRNA processing" evidence=IMP] [GO:0009553 "embryo sac
development" evidence=IMP] [GO:0009791 "post-embryonic development"
evidence=IMP] [GO:0090406 "pollen tube" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0009561 "megagametogenesis"
evidence=IMP] [GO:0006606 "protein import into nucleus"
evidence=RCA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005524 GO:GO:0005634 GO:GO:0003676
GO:GO:0009791 GO:GO:0009561 EMBL:AC006341 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 KO:K14778
HOGENOM:HOG000268802 OMA:EVRTVEQ GO:GO:0090406 IPI:IPI00521131
PIR:G86297 RefSeq:NP_173078.1 UniGene:At.51634
ProteinModelPortal:Q9SA27 SMR:Q9SA27 PaxDb:Q9SA27 PRIDE:Q9SA27
EnsemblPlants:AT1G16280.1 GeneID:838197 KEGG:ath:AT1G16280
KEGG:dosa:Os07t0633500-00 GeneFarm:1012 TAIR:At1g16280
InParanoid:Q9SA27 PhylomeDB:Q9SA27 ProtClustDB:CLSN2679781
Genevestigator:Q9SA27 GermOnline:AT1G16280 Uniprot:Q9SA27
Length = 491
Score = 327 (120.2 bits), Expect = 3.3e-38, Sum P(3) = 3.3e-38
Identities = 100/312 (32%), Positives = 152/312 (48%)
Query: 31 LGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFN 90
LGL V + G++KPT +Q +P IL G+DV+ A+TGSGKT A+ LP+LHRL
Sbjct: 63 LGLAEWAVETCKELGMRKPTPVQTHCVPKILAGRDVLGLAQTGSGKTAAFALPILHRLAE 122
Query: 91 ESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAAL 150
+ P A LV+ PTREL Q+ + AL C + L+ + M +L
Sbjct: 123 D--PYGVFA---LVVTPTRELAFQLAEQFKALGS-C---LNLRCSVIVGGMDMLTQTMSL 173
Query: 151 AGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIP 210
P IVI TPG + L FS + K LVLDEAD +L G++D+L+ + +P
Sbjct: 174 VSRPHIVITTPGRIKVLLENNPDVPPVFSRT-KFLVLDEADRVLDVGFQDELRTIFQCLP 232
Query: 211 RGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSE-RDK 269
+ Q LL SAT +S++ L + + Y E D + QQF + ++
Sbjct: 233 KSRQTLLFSATMTSNLQALLEHSSNKAYFYEAYEGLKTVDTL----TQQFIFEDKDAKEL 288
Query: 270 XXXXXXXXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEF 329
+ A+IF +T RL L L++ +++ +++ Q+ RL L +F
Sbjct: 289 YLVHILSQMEDKGIRSAMIFVSTCRTCQRLSLMLDELEVENIAMHSLNSQSMRLSALSKF 348
Query: 330 NAGLFDYLIATD 341
+G L+ATD
Sbjct: 349 KSGKVPILLATD 360
Score = 134 (52.2 bits), Expect = 3.3e-38, Sum P(3) = 3.3e-38
Identities = 24/59 (40%), Positives = 40/59 (67%)
Query: 378 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVG 436
RG+D V VIN+++P++ YVHR+GRT RA G +VS+++ ++K+ +I+ VG
Sbjct: 364 RGLDIPTVDLVINYDIPRDPRDYVHRVGRTARAGRGGLAVSIITETDVKLIHKIEEEVG 422
Score = 43 (20.2 bits), Expect = 3.2e-05, Sum P(3) = 3.2e-05
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 346 KEKDQSDEGGHVDSRKSKKHPK 367
+E +EGG KS+K+PK
Sbjct: 2 EEPTPEEEGGITIMSKSRKNPK 23
Score = 37 (18.1 bits), Expect = 3.3e-38, Sum P(3) = 3.3e-38
Identities = 7/21 (33%), Positives = 13/21 (61%)
Query: 543 KLARAAMGNKNSSRRQGPRRK 563
KL R + +K +++G R+K
Sbjct: 467 KLKRKTLADKGLLKKRGKRQK 487
>UNIPROTKB|O05855 [details] [associations]
symbol:rhlE "PROBABLE ATP-DEPENDENT RNA HELICASE RHLE"
species:83332 "Mycobacterium tuberculosis H37Rv" [GO:0005618 "cell
wall" evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005618
GenomeReviews:AE000516_GR GenomeReviews:AL123456_GR GO:GO:0003676
EMBL:BX842582 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081
HOGENOM:HOG000268807 EMBL:CP003248 PIR:D70595 RefSeq:NP_217727.1
RefSeq:NP_337835.1 RefSeq:YP_006516683.1 SMR:O05855
EnsemblBacteria:EBMYCT00000003215 EnsemblBacteria:EBMYCT00000071518
GeneID:13318029 GeneID:888840 GeneID:923099 KEGG:mtc:MT3307
KEGG:mtu:Rv3211 KEGG:mtv:RVBD_3211 PATRIC:18129030
TubercuList:Rv3211 OMA:RWQLIDK ProtClustDB:CLSK792349
Uniprot:O05855
Length = 527
Score = 331 (121.6 bits), Expect = 4.9e-38, Sum P(2) = 4.9e-38
Identities = 104/324 (32%), Positives = 156/324 (48%)
Query: 31 LGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFN 90
LG+ +V AL ++GI++P IQ+ ++PL L+G+DV+ +A+TG GKTFA+ +PLL R+ +
Sbjct: 15 LGVRDEIVRALGEEGIKRPFAIQELTLPLALDGEDVIGQARTGMGKTFAFGVPLLQRITS 74
Query: 91 ESSPKSKL-APAALVLVPTRELCQQVYSEVMALIE-LCKG---------QVQLKVVQLTS 139
+ AP ALV+VPTRELC QV ++ + L G + +L VV +
Sbjct: 75 GDGTRPLTGAPRALVVVPTRELCLQVTDDLATAGKYLTAGPDTDDAAAVRRRLSVVSIYG 134
Query: 140 SMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYE 199
P AL D+V+ TPG + G LQ L +LVLDEAD +L G+
Sbjct: 135 GRPYEPQIEALRAGADVVVGTPGRLLDLCQQGHLQL----GGLSVLVLDEADEMLDLGFL 190
Query: 200 DDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNP-YILT-LPEVGDVKDEVIPKNV 257
D++ + IP Q +L SAT + L + + P +I P V D
Sbjct: 191 PDIERILRQIPADRQSMLFSATMPDPIITLARTFMVRPTHIRAEAPHSSAVHDAT----- 245
Query: 258 QQFWISCSERDKXXXXXXXXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAEL 317
+QF DK + +IFT T A ++ L + G ++ +L
Sbjct: 246 EQFVYRAHALDKVELVSRVLQARD-RGATMIFTRTKRTAQKVADELTERGFAVGAVHGDL 304
Query: 318 PQNSRLHILEEFNAGLFDYLIATD 341
Q +R L+ F G D L+ATD
Sbjct: 305 GQLAREKALKAFRTGGIDVLVATD 328
Score = 138 (53.6 bits), Expect = 4.9e-38, Sum P(2) = 4.9e-38
Identities = 33/81 (40%), Positives = 48/81 (59%)
Query: 378 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGD 437
RGID +V VIN++ P++ YVHRIGRTGRA TG +V+LV DE+ + I +G
Sbjct: 332 RGIDIDDVTHVINYQCPEDEKMYVHRIGRTGRAGRTGVAVTLVDWDELPRWSMIDQALGL 391
Query: 438 DENEDSNIIAPFP-LLAQNAV 457
+ + + P L A+ A+
Sbjct: 392 GSPDPAETYSNSPHLYAELAI 412
>TIGR_CMR|GSU_0491 [details] [associations]
symbol:GSU_0491 "ATP-dependent RNA helicase RhlE"
species:243231 "Geobacter sulfurreducens PCA" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008152
"metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE017180 GenomeReviews:AE017180_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807
RefSeq:NP_951550.1 ProteinModelPortal:Q74FW1 GeneID:2686040
KEGG:gsu:GSU0491 PATRIC:22023733 OMA:TTHEHIE ProtClustDB:CLSK827872
BioCyc:GSUL243231:GH27-490-MONOMER Uniprot:Q74FW1
Length = 450
Score = 319 (117.4 bits), Expect = 5.7e-38, Sum P(2) = 5.7e-38
Identities = 97/312 (31%), Positives = 152/312 (48%)
Query: 31 LGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFN 90
L L ++ A+ G +PT +Q A++P LE D++A A+TG+GKT A++LP L RL
Sbjct: 6 LKLAPHILKAVAACGYTEPTPVQAAAVPRALENVDLLATAQTGTGKTAAFVLPALQRL-- 63
Query: 91 ESSPKSK-LAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAA 149
S P+ P LVL PTREL QQV V ++++ + MP
Sbjct: 64 SSPPQGPGRGPRVLVLTPTRELAQQVTDAVRTYGAF----MRVRSGAILGGMPYHAQLRL 119
Query: 150 LAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVI 209
L+ P D ++ATPG + L +S S L++LVLDEAD +L G+ DD+ ++A
Sbjct: 120 LSAPVDFIVATPGRLVDLLDR---RSLDLS-RLELLVLDEADRMLDMGFSDDVDRIAAAS 175
Query: 210 PRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDK 269
P Q LL +AT S + +L +L P + + + + Q+ ++ K
Sbjct: 176 PATRQTLLFTATMDSAMARLAGRLLREPERIDIAGTKTTHEHI----EQRLHVADDLHHK 231
Query: 270 XXXXXXXXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEF 329
+ ++A+IF+ T A L L L+ G +A L+ ++PQN+R +
Sbjct: 232 NRLLRHLITDESL-RRAIIFSATKRDAENLALELKAQGHSAAALHGDMPQNARNRTIAAM 290
Query: 330 NAGLFDYLIATD 341
G L+ATD
Sbjct: 291 KQGRIRLLVATD 302
Score = 138 (53.6 bits), Expect = 5.7e-38, Sum P(2) = 5.7e-38
Identities = 26/59 (44%), Positives = 39/59 (66%)
Query: 378 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVG 436
RG+D + VINF++P+ A YVHRIGRTGRA +G ++S S +E+ I+ ++G
Sbjct: 306 RGLDVTGISHVINFDLPKFAEDYVHRIGRTGRAGASGIAISFASLNEVNYLARIERYIG 364
>POMBASE|SPAC30D11.03 [details] [associations]
symbol:ddx27 "ATP-dependent RNA helicase Ddx27/Drs1
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISO] [GO:0005524 "ATP binding" evidence=ISM]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=ISO;IDA] [GO:0006364 "rRNA processing" evidence=ISO]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 PomBase:SPAC30D11.03 GO:GO:0005524 EMBL:CU329670
GO:GO:0005730 GenomeReviews:CU329670_GR GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000265456 KO:K13181 OrthoDB:EOG4B01XM PIR:S62561
RefSeq:NP_593214.1 ProteinModelPortal:Q09903 STRING:Q09903
EnsemblFungi:SPAC30D11.03.1 GeneID:2543155 KEGG:spo:SPAC30D11.03
NextBio:20804181 Uniprot:Q09903
Length = 754
Score = 342 (125.4 bits), Expect = 9.1e-38, Sum P(2) = 9.1e-38
Identities = 96/313 (30%), Positives = 156/313 (49%)
Query: 31 LGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFN 90
+ L ++ L+ G + PT IQ +IPL L GKD+V A TGSGKT A+++P+L RL
Sbjct: 264 MNLSRPILKGLSNLGFEVPTQIQDKTIPLALLGKDIVGAAVTGSGKTAAFIVPILERLLY 323
Query: 91 ESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAAL 150
PK L+L PTREL Q +S + V L + L+ + +LR
Sbjct: 324 R--PKKVPTTRVLILCPTRELAMQCHSVATKIASFTDIMVCLCIGGLSLKLQEQELRKR- 380
Query: 151 AGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLKALSAVI 209
PDIVIATPG + + + S+ F+ ++++I+V+DEAD +L G+ D+L +
Sbjct: 381 ---PDIVIATPG---RFIDH-MRNSQGFTVENIEIMVMDEADRMLEDGFADELNEIIQAC 433
Query: 210 PRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDK 269
P+ Q +L SAT + VD L +L L+ P + + D K Q+F +R+
Sbjct: 434 PKSRQTMLFSATMTDKVDDLIRLSLNRPVRVFV----DNKKTTAKLLTQEFVRVRPQREL 489
Query: 270 XXXXXXXXXXXXV-QKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEE 328
+ ++ +IF + A ++++ + + ++ L Q R+ LE+
Sbjct: 490 LRPAMLIYLCKELFHRRTIIFFRSKAFAHKMRVIFGLLSLNATEIHGSLSQEQRVRALED 549
Query: 329 FNAGLFDYLIATD 341
F G +YL+ATD
Sbjct: 550 FRDGKCNYLLATD 562
Score = 134 (52.2 bits), Expect = 9.1e-38, Sum P(2) = 9.1e-38
Identities = 48/196 (24%), Positives = 82/196 (41%)
Query: 378 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGD 437
RGID K + VIN+E P Y+HR+GRT RA +G +++L + K+ +K +
Sbjct: 566 RGIDIKGIEVVINYEAPATHEVYLHRVGRTARAGRSGRAITLAGEGDRKV---LKGVFKN 622
Query: 438 DENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLR---NEILNSEKL 494
+++ ++ L N VE E++ V K+ E + ++L+ ++ E +
Sbjct: 623 SSAQNTKLVNRN--LDFNKVEKFGKEIEELEPVVQKVLDEEKQERELKIAERDLKKGENI 680
Query: 495 -KAHFEVNPXXXXXXXXXXXXXXXPPASHLRDVPDYLLDAKTQE------ACKMVKLARA 547
K E+ AS +D K E A K K R
Sbjct: 681 MKYGDEIRSRPARTWFQSEKDKQASKASEAKDKKSLAKRKKQMEKEEVPRAYKKTKNDR- 739
Query: 548 AMGNKNSSRRQGPRRK 563
+ NK S+++ +RK
Sbjct: 740 -LSNKKSTKKSKSKRK 754
>FB|FBgn0021995 [details] [associations]
symbol:Rs1 "Rs1" species:7227 "Drosophila melanogaster"
[GO:0003724 "RNA helicase activity" evidence=ISS] [GO:0042254
"ribosome biogenesis" evidence=NAS] [GO:0004004 "ATP-dependent RNA
helicase activity" evidence=ISS] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 EMBL:AE013599 GO:GO:0005524 GO:GO:0003676
GO:GO:0042254 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
GO:GO:0016779 HSSP:P10081 GeneTree:ENSGT00550000074997 KO:K13181
CTD:6247 EMBL:BT004908 RefSeq:NP_651970.1 UniGene:Dm.11481
SMR:Q7JQN4 STRING:Q7JQN4 EnsemblMetazoa:FBtr0088788 GeneID:44087
KEGG:dme:Dmel_CG2173 UCSC:CG2173-RA FlyBase:FBgn0021995
InParanoid:Q7JQN4 OMA:EHYIHRV OrthoDB:EOG42NGFQ GenomeRNAi:44087
NextBio:836725 Uniprot:Q7JQN4
Length = 782
Score = 325 (119.5 bits), Expect = 4.2e-37, Sum P(3) = 4.2e-37
Identities = 105/315 (33%), Positives = 152/315 (48%)
Query: 31 LGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFN 90
+ L L+ A+ G PT IQ ++IP+ L G+D+ A TG+GKT AY+LP L RL
Sbjct: 162 MNLSRPLMRAIGVLGYIYPTPIQASTIPVALLGRDICGCAATGTGKTAAYMLPTLERLLY 221
Query: 91 ESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAAL 150
+K LVLVPTREL QVY L + V L + L + A + A L
Sbjct: 222 RPL-NNKAITRVLVLVPTRELGAQVYQVTKQLCQFTTIDVGLAIGGL--DVKAQE--AVL 276
Query: 151 AGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLKALSAVI 209
PDIVIATPG L + + SF+ DS+++L+LDEAD +L + + +K +
Sbjct: 277 RQNPDIVIATPGR----LIDHIKNTPSFTLDSIEVLILDEADRMLDEYFAEQMKEIINSC 332
Query: 210 PRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDK 269
+ Q +L SAT S V L + L P +V ++ + N++Q +I E DK
Sbjct: 333 CKTRQTMLFSATMSEQVKDLAAVSLDKPI-----KVFVNNNQQVAFNLRQEFIRIRE-DK 386
Query: 270 XXXXXXXXXXXXVQK---KALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHIL 326
+ ++F T A RL + L G+++ L+ L Q RL L
Sbjct: 387 EGDREPILASLICRTFHDHCMVFVQTKKQAHRLHILLGLLGVRAGELHGNLTQQQRLESL 446
Query: 327 EEFNAGLFDYLIATD 341
++F D LIATD
Sbjct: 447 KKFKEEQIDVLIATD 461
Score = 142 (55.0 bits), Expect = 4.2e-37, Sum P(3) = 4.2e-37
Identities = 35/92 (38%), Positives = 49/92 (53%)
Query: 378 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGD 437
RG+D V TVINF MP Y+HR+GRT RA G SVSL E KI +K + +
Sbjct: 465 RGLDIVGVKTVINFVMPITTEHYIHRVGRTARAGRAGISVSLAGEKERKI---VKDIIKN 521
Query: 438 DENEDSNIIAPFPLLAQ--NAVESLRYRAEDV 467
E+ N I P ++ + N + SL +++
Sbjct: 522 AESTIKNRIIPPEIIEKYRNKLTSLEPEIQNI 553
Score = 45 (20.9 bits), Expect = 4.2e-37, Sum P(3) = 4.2e-37
Identities = 13/35 (37%), Positives = 19/35 (54%)
Query: 571 KSFSAEPTKRAGKGRMKREGRN--GDDTGKHKKKK 603
K+ S + T +AGK + + G+N G K KKK
Sbjct: 749 KASSVKLTNKAGKNKFNK-GKNFGGPRHAKKDKKK 782
Score = 40 (19.1 bits), Expect = 1.4e-36, Sum P(3) = 1.4e-36
Identities = 19/74 (25%), Positives = 35/74 (47%)
Query: 533 AKTQEACKMVKLARAAMGNKNSSRR--QGPRRKFRKSDPLKSFSAEPTKRAG-KGRMKRE 589
AKT++ ++ K R +G N R Q +++ + D L + + K +G KG+ K
Sbjct: 564 AKTEQ--QLSKTERKLLGQTNERRGWFQTKQQREAEKDRLALTTGDEDKASGGKGKGKTA 621
Query: 590 GR--------NGDD 595
G+ +G+D
Sbjct: 622 GKRKRPEYGGDGED 635
>TAIR|locus:2087832 [details] [associations]
symbol:PMH1 "putative mitochondrial RNA helicase 1"
species:3702 "Arabidopsis thaliana" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA;ISS] [GO:0003677 "DNA binding" evidence=IDA]
[GO:0003723 "RNA binding" evidence=IDA] [GO:0009409 "response to
cold" evidence=IEP] [GO:0009414 "response to water deprivation"
evidence=IMP] [GO:0009651 "response to salt stress" evidence=IMP]
[GO:0043234 "protein complex" evidence=IDA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0043234 GO:GO:0003677 GO:GO:0009651
GO:GO:0009409 GO:GO:0009414 GO:GO:0003723 EMBL:AB022215
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268800 ProtClustDB:CLSN2684125 EMBL:AY091091
EMBL:AJ010461 IPI:IPI00517476 PIR:T51341 RefSeq:NP_188870.1
UniGene:At.25190 ProteinModelPortal:Q9LUW6 SMR:Q9LUW6 IntAct:Q9LUW6
STRING:Q9LUW6 PaxDb:Q9LUW6 PRIDE:Q9LUW6 EnsemblPlants:AT3G22310.1
GeneID:821800 KEGG:ath:AT3G22310 GeneFarm:922 TAIR:At3g22310
InParanoid:Q9LUW6 OMA:VSQGRQV PhylomeDB:Q9LUW6
Genevestigator:Q9LUW6 GermOnline:AT3G22310 Uniprot:Q9LUW6
Length = 610
Score = 332 (121.9 bits), Expect = 8.3e-37, Sum P(2) = 8.3e-37
Identities = 97/313 (30%), Positives = 152/313 (48%)
Query: 31 LGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRL-- 88
LG+ +V AL +GI+K IQ+A + +EG+D++ RA+TG+GKT A+ +P++ ++
Sbjct: 121 LGISPEIVKALKGRGIEKLFPIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPIIDKIIK 180
Query: 89 FNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRA 148
FN + K P LVL PTREL +QV E + L + L P
Sbjct: 181 FNAKHGRGK-NPQCLVLAPTRELARQVEKEFR------ESAPSLDTICLYGGTPIGQQMR 233
Query: 149 ALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAV 208
L D+ + TPG + + G L + S+ ++ +VLDEAD +L G+ +D++ +
Sbjct: 234 ELNYGIDVAVGTPGRIIDLMKRGAL---NLSE-VQFVVLDEADQMLQVGFAEDVEIILQK 289
Query: 209 IPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERD 268
+P Q ++ SAT S + L K L+NP LT+ VGD D+ + + + I+
Sbjct: 290 LPAKRQSMMFSATMPSWIRSLTKKYLNNP--LTIDLVGD-SDQKLADGITMYSIAADSYG 346
Query: 269 KXXXXXXXXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEE 328
+ K ++FT T A RL L K K L+ ++ Q R L
Sbjct: 347 RASIIGPLVKEHGKGGKCIVFTQTKRDADRLAFGLAK-SYKCEALHGDISQAQRERTLAG 405
Query: 329 FNAGLFDYLIATD 341
F G F L+ATD
Sbjct: 406 FRDGNFSILVATD 418
Score = 131 (51.2 bits), Expect = 8.3e-37, Sum P(2) = 8.3e-37
Identities = 26/64 (40%), Positives = 39/64 (60%)
Query: 378 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGD 437
RG+D NV VI++E+P N +VHR GRTGRA G+++ + D+ + + I+ VG
Sbjct: 422 RGLDVPNVDLVIHYELPNNTETFVHRTGRTGRAGKKGSAILIHGQDQTRAVKMIEKEVGS 481
Query: 438 DENE 441
NE
Sbjct: 482 RFNE 485
>UNIPROTKB|F1NA53 [details] [associations]
symbol:DDX49 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00670000098028 EMBL:AADN02071779 EMBL:AADN02071780
IPI:IPI00684751 ProteinModelPortal:F1NA53
Ensembl:ENSGALT00000004949 ArrayExpress:F1NA53 Uniprot:F1NA53
Length = 402
Score = 321 (118.1 bits), Expect = 9.4e-37, Sum P(2) = 9.4e-37
Identities = 111/319 (34%), Positives = 155/319 (48%)
Query: 31 LGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFN 90
LGL LV + G+ +PT +Q + IP IL+G+D + AKTGSGKT A++LP+L L
Sbjct: 7 LGLAPWLVEQARQMGLSRPTPVQASCIPPILQGRDCLGCAKTGSGKTAAFVLPVLQVLSE 66
Query: 91 ESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAAL 150
+ P LVL PTREL Q+ +E ++ G VV M A L L
Sbjct: 67 D--PYGIFC---LVLTPTRELAYQI-AEQFRVLGKPLGLKDCVVVG-GLDMVAQALE--L 117
Query: 151 AGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYED---DLKALS 206
+ P +VIATPG + L + S +FS LK LVLDEAD LL G D DL+ +
Sbjct: 118 SRKPHVVIATPGRLADHLRS----SNTFSLKKLKFLVLDEADRLLEQGCADFTADLEVIL 173
Query: 207 AVIPRGCQCLLMSATSSSDVDKLKKLILHNPYIL-TLPEVGDVKDEVIPKNVQQFWISCS 265
+P Q LL SAT + +++LK L ++ P+ EV V DE+ Q ++
Sbjct: 174 EAVPARRQTLLFSATLTDTLNELKSLAMNRPFFWEAASEVRTV-DEL-----DQRYLLVP 227
Query: 266 ERDKXXXXXXXXXXXXVQKK---ALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSR 322
E K + + +IFT T L + L KF S L++ + Q R
Sbjct: 228 EAVKDAYLVHLIQTFQDEHEDWSIIIFTKTCKECQILNMMLRKFSFPSVALHSMMKQRQR 287
Query: 323 LHILEEFNAGLFDYLIATD 341
L +F + +F LIATD
Sbjct: 288 FAALAKFKSSIFKILIATD 306
Score = 101 (40.6 bits), Expect = 9.4e-37, Sum P(2) = 9.4e-37
Identities = 20/55 (36%), Positives = 31/55 (56%)
Query: 378 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIK 432
RG+D V VIN P Y+HR+GRT RA G S+++V+ ++ + I+
Sbjct: 310 RGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRNGISITMVTQYDIHLVHAIE 364
>TAIR|locus:2087852 [details] [associations]
symbol:PMH2 "putative mitochondrial RNA helicase 2"
species:3702 "Arabidopsis thaliana" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA;ISS] [GO:0005739 "mitochondrion"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005618
"cell wall" evidence=IDA] [GO:0000373 "Group II intron splicing"
evidence=IMP] [GO:0009409 "response to cold" evidence=IEP]
[GO:0043234 "protein complex" evidence=IDA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005739 GO:GO:0005524
GO:GO:0005618 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0043234
GO:GO:0005730 GO:GO:0009409 GO:GO:0003723 EMBL:AB022215
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GO:GO:0000373 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
EMBL:AY062502 EMBL:AY093256 IPI:IPI00524382 RefSeq:NP_188872.2
UniGene:At.27322 ProteinModelPortal:Q9LUW5 SMR:Q9LUW5 STRING:Q9LUW5
PaxDb:Q9LUW5 PRIDE:Q9LUW5 EnsemblPlants:AT3G22330.1 GeneID:821802
KEGG:ath:AT3G22330 GeneFarm:1033 TAIR:At3g22330
HOGENOM:HOG000268800 InParanoid:Q9LUW5 OMA:HGRGRNP PhylomeDB:Q9LUW5
ProtClustDB:CLSN2684125 Genevestigator:Q9LUW5 GermOnline:AT3G22330
Uniprot:Q9LUW5
Length = 616
Score = 334 (122.6 bits), Expect = 1.1e-36, Sum P(2) = 1.1e-36
Identities = 94/312 (30%), Positives = 153/312 (49%)
Query: 31 LGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFN 90
LG+ +V AL+ KGI+K IQ+A + +EG+D++ RA+TG+GKT A+ +P++ ++
Sbjct: 109 LGISPEIVKALSSKGIEKLFPIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPIIDKIIK 168
Query: 91 ESSPKSK-LAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAA 149
++ + P LVL PTREL +QV E + L + L P
Sbjct: 169 YNAKHGRGRNPLCLVLAPTRELARQVEKEFR------ESAPSLDTICLYGGTPIGQQMRQ 222
Query: 150 LAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVI 209
L D+ + TPG + + G L + S+ ++ +VLDEAD +L G+ +D++ + +
Sbjct: 223 LDYGVDVAVGTPGRVIDLMKRGAL---NLSE-VQFVVLDEADQMLQVGFAEDVEIILEKL 278
Query: 210 PRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDK 269
P Q ++ SAT S + L K L+NP LT+ VGD D+ + + + I +
Sbjct: 279 PEKRQSMMFSATMPSWIRSLTKKYLNNP--LTVDLVGD-SDQKLADGITTYSIIADSYGR 335
Query: 270 XXXXXXXXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEF 329
K ++FT T A RL L + K L+ ++ Q+ R L F
Sbjct: 336 ASIIGPLVTEHAKGGKCIVFTQTKRDADRLSYALAR-SFKCEALHGDISQSQRERTLAGF 394
Query: 330 NAGLFDYLIATD 341
G F+ L+ATD
Sbjct: 395 RDGHFNILVATD 406
Score = 128 (50.1 bits), Expect = 1.1e-36, Sum P(2) = 1.1e-36
Identities = 24/59 (40%), Positives = 38/59 (64%)
Query: 378 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVG 436
RG+D NV +I++E+P N +VHR GRTGRA G+++ + S D+ + + I+ VG
Sbjct: 410 RGLDVPNVDLIIHYELPNNTETFVHRTGRTGRAGKKGSAILIYSQDQSRAVKIIEREVG 468
>POMBASE|SPAC1006.07 [details] [associations]
symbol:SPAC1006.07 "translation initiation factor eIF4A
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0002183
"cytoplasmic translational initiation" evidence=NAS] [GO:0003743
"translation initiation factor activity" evidence=ISO] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISO] [GO:0005524
"ATP binding" evidence=IC] [GO:0005829 "cytosol" evidence=IDA]
[GO:0006413 "translational initiation" evidence=ISO] [GO:0016281
"eukaryotic translation initiation factor 4F complex" evidence=ISO]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 PomBase:SPAC1006.07 GO:GO:0005829 GO:GO:0005524
EMBL:CU329670 GenomeReviews:CU329670_GR GO:GO:0016281 GO:GO:0003743
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 HOGENOM:HOG000268797 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0002183 KO:K03257 OrthoDB:EOG4PG98F
EMBL:X80796 EMBL:L40627 PIR:S71745 RefSeq:NP_594854.1
ProteinModelPortal:P47943 SMR:P47943 STRING:P47943 PRIDE:P47943
EnsemblFungi:SPAC1006.07.1 GeneID:2542948 KEGG:spo:SPAC1006.07
OMA:PILEMED NextBio:20803983 Uniprot:P47943
Length = 392
Score = 287 (106.1 bits), Expect = 1.6e-36, Sum P(2) = 1.6e-36
Identities = 88/314 (28%), Positives = 161/314 (51%)
Query: 31 LGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFN 90
+ L L+ + G ++P+ IQQ +I IL +DV+A+A++G+GKT + + +L ++
Sbjct: 24 MNLKPELLRGIYAYGFERPSAIQQRAIMPILGERDVLAQAQSGTGKTATFSISVLQKI-- 81
Query: 91 ESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAAL 150
++S K AL+L PTREL QQ+ V+AL +L V+ + ++ D+ A
Sbjct: 82 DTSLKQC---QALILAPTRELAQQIQKVVVALGDLMN--VECHAC-IGGTLVRDDMAALQ 135
Query: 151 AGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIP 210
AG +V+ TPG + + L + D++++ VLDEAD +LS G++D + + ++P
Sbjct: 136 AGV-HVVVGTPGRVHDMIQRRALPT----DAVQMFVLDEADEMLSRGFKDQIYDIFQLLP 190
Query: 211 RGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKX 270
Q +L+SAT DV ++ + +P + + KDE+ + ++QF+++ + +
Sbjct: 191 PTAQVVLLSATMPQDVLEVTTKFMRDPIRILVK-----KDELTLEGIKQFYVAVEKEEWK 245
Query: 271 XXXXXXXXXXXVQKKALIFTNT---IDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILE 327
+A+IF NT +D +L F + S ++ ++ Q R ++
Sbjct: 246 LDTLCDLYETVTVTQAVIFCNTRRKVDWLTE-QLTERDFTVSS--MHGDMDQAQRDTLMH 302
Query: 328 EFNAGLFDYLIATD 341
EF G LI TD
Sbjct: 303 EFRTGSSRILITTD 316
Score = 141 (54.7 bits), Expect = 1.6e-36, Sum P(2) = 1.6e-36
Identities = 25/59 (42%), Positives = 39/59 (66%)
Query: 376 VVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSF 434
+ RGID + V VIN+++P N Y+HRIGR GR G S++ V+ D++++ EI+ F
Sbjct: 318 LARGIDVQQVSLVINYDLPANRENYIHRIGRGGRFGRKGVSINFVTNDDVRMMREIEQF 376
>ASPGD|ASPL0000072637 [details] [associations]
symbol:AN4903 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005730
"nucleolus" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005730 GO:GO:0003723 EMBL:BN001303 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:AACD01000084 GO:GO:0006364
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K14778 RefSeq:XP_662507.1 ProteinModelPortal:Q5B3H7
EnsemblFungi:CADANIAT00005498 GeneID:2872706 KEGG:ani:AN4903.2
HOGENOM:HOG000268802 OMA:EVRTVEQ OrthoDB:EOG4PP1RW Uniprot:Q5B3H7
Length = 525
Score = 318 (117.0 bits), Expect = 2.1e-36, Sum P(2) = 2.1e-36
Identities = 96/313 (30%), Positives = 151/313 (48%)
Query: 37 LVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKS 96
LV +L ++KPT IQ+A IP IL+G+D + ++TGSGKT A+ +P+L + + P
Sbjct: 106 LVGSLTTMAVRKPTAIQRACIPEILKGRDCIGGSRTGSGKTIAFSVPILQKWAED--P-- 161
Query: 97 KLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDI 156
A++L PTREL Q++ ++ A+ +K V +T LAG P +
Sbjct: 162 -FGIFAVILTPTRELALQIFEQIKAI----SAPQSMKPVLITGGTDMRSQAIELAGRPHV 216
Query: 157 VIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYED---DLKALSAVIPRGC 213
V+ATPG + ++T + + ++++VLDEAD LLS G D++ + +P
Sbjct: 217 VVATPGRLADHINTSGTDTVAGLKRVRMVVLDEADRLLSPGPGSMLPDVETCLSFLPGPS 276
Query: 214 Q--CLLMSATSSSDVDKLKKL--ILHNPYILTLPEVGDVKDEVIPK-NVQQFWISCSERD 268
Q LL +AT + +V LK + P I + KD V P + + R+
Sbjct: 277 QRQTLLFTATLTPEVRALKSMPQTPGKPPIFVTEISTEAKDTVPPTLRTTYVQVPLTHRE 336
Query: 269 KXXXXXXXXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEE 328
+ K A++FTNT A L+ L G + L++ LPQ+ R L
Sbjct: 337 -AFLHVLLSTESNITKSAIVFTNTTKSADLLERLLRSLGHRVTSLHSLLPQSERNSNLAR 395
Query: 329 FNAGLFDYLIATD 341
F A L+ATD
Sbjct: 396 FRASAARVLVATD 408
Score = 138 (53.6 bits), Expect = 2.1e-36, Sum P(2) = 2.1e-36
Identities = 26/59 (44%), Positives = 40/59 (67%)
Query: 378 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVG 436
RG+D +V V+NFE+P+N YVHR+GRT RA TG +V+LV ++++ I+ +G
Sbjct: 412 RGLDIPSVSLVVNFEVPRNPDDYVHRVGRTARAGRTGEAVTLVGQRDVQLVLAIEERIG 470
>DICTYBASE|DDB_G0269192 [details] [associations]
symbol:tifA "eukaryotic translation initiation factor
4A" species:44689 "Dictyostelium discoideum" [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0006413
"translational initiation" evidence=IEA] [GO:0006412 "translation"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0003743
"translation initiation factor activity" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0044351 "macropinocytosis" evidence=RCA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 dictyBase:DDB_G0269192 GO:GO:0005524 GO:GO:0005737
EMBL:AAFI02000005 GenomeReviews:CM000150_GR GO:GO:0003743
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081
KO:K13025 OMA:LALGDFM RefSeq:XP_646270.1 ProteinModelPortal:Q55D61
SMR:Q55D61 PRIDE:Q55D61 EnsemblProtists:DDB0191511 GeneID:8617226
KEGG:ddi:DDB_G0269192 Uniprot:Q55D61
Length = 405
Score = 297 (109.6 bits), Expect = 2.9e-36, Sum P(2) = 2.9e-36
Identities = 89/311 (28%), Positives = 153/311 (49%)
Query: 31 LGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFN 90
+GL L+ + G +KP+ IQQ +I I++G+D +A+A++G+GKT + + L +
Sbjct: 37 MGLREELLRGIFNYGFEKPSAIQQRAILPIIKGRDTIAQAQSGTGKTATFSIGALQCV-- 94
Query: 91 ESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAAL 150
E + +S P L+L PTREL QQ+ +AL E QV V S D++
Sbjct: 95 EVNVRS---PQVLILSPTRELAQQIQKVALALSEFMNIQVHACVGGKNLS---DDVKKLE 148
Query: 151 AGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIP 210
G IV TPG + ++ L ++ +K+++LDEAD +LS G++ + + +P
Sbjct: 149 TGV-HIVSGTPGRVLDMITRKSLPTRH----IKMMILDEADEMLSLGFQQQINDVYRYLP 203
Query: 211 RGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKX 270
G Q +L+SAT + DV + + + P + L +DE+ ++QF++S + D
Sbjct: 204 NGTQIVLVSATLTQDVVSMTEKFMTKPVRILLK-----RDELTLDGIKQFFVSVEKEDWK 258
Query: 271 XXXXXXXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFN 330
+A+IF NT +L + A ++ ++ Q R I++ F
Sbjct: 259 FGTLCDIYDSLTITQAVIFCNTKKKVDQLTEQMRDANFTVASMHGDMVQKEREEIIKSFR 318
Query: 331 AGLFDYLIATD 341
+G LI TD
Sbjct: 319 SGENRVLITTD 329
Score = 128 (50.1 bits), Expect = 2.9e-36, Sum P(2) = 2.9e-36
Identities = 23/66 (34%), Positives = 40/66 (60%)
Query: 376 VVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 435
+ RGID + V VIN+++P + Y+HRIGR+GR G +++ V +++I +I+ F
Sbjct: 331 LARGIDVQQVSLVINYDLPIDRENYIHRIGRSGRFGRKGVAINFVKNSDIRILRDIEQFY 390
Query: 436 GDDENE 441
+E
Sbjct: 391 STQIDE 396
>UNIPROTKB|Q9KU63 [details] [associations]
symbol:VC_0660 "ATP-dependent RNA helicase SrmB"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0016070 "RNA metabolic process" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:AE003852 GenomeReviews:AE003852_GR
GO:GO:0003676 GO:GO:0016070 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 InterPro:IPR014014 PROSITE:PS51195
HSSP:P10081 OMA:PLAMDQR KO:K05590 ProtClustDB:PRK11192 PIR:F82295
RefSeq:NP_230309.1 ProteinModelPortal:Q9KU63 DNASU:2615450
GeneID:2615450 KEGG:vch:VC0660 PATRIC:20080435 Uniprot:Q9KU63
Length = 423
Score = 300 (110.7 bits), Expect = 4.5e-36, Sum P(2) = 4.5e-36
Identities = 93/313 (29%), Positives = 151/313 (48%)
Query: 31 LGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFN 90
L LD L+ A+ + G +PT +Q +IP L+G+DV+A A TG+GKT A+++P L L +
Sbjct: 8 LELDPILLEAIEEMGFSRPTQVQAEAIPQALDGRDVLASAPTGTGKTAAFVIPALQYLLD 67
Query: 91 ESSPKSKLAPAA-LVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAA 149
P+ K PA L+L PTREL QV + AL + +L + +T + +
Sbjct: 68 --FPRRKAGPARILILTPTRELAMQVAEQAQALAK----NTRLNIFTITGGVQYQEHADI 121
Query: 150 LAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVI 209
LA DIV+ATPG + + + ++ ++ L+LDEAD +L G+ + LS
Sbjct: 122 LATTQDIVVATPGRLLEYIDAERFDCRA----IEWLILDEADRMLDMGFGPTVDRLSTEC 177
Query: 210 PRGCQCLLMSAT-SSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERD 268
Q LL SAT V+ +L +P + + + E K + Q W ++
Sbjct: 178 RWRKQTLLFSATLEGRGVEGFTADLLKDPAHV---DAEPPRRE--RKKISQ-WYHRADDM 231
Query: 269 KXXXXXXXXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEE 328
+++++F T + L+ LEK I A + E+PQ+ R + +
Sbjct: 232 PHKVELLKKILTEQAERSIVFLKTRERLADLRAELEKAQIPCAWIQGEMPQDRRNNAISR 291
Query: 329 FNAGLFDYLIATD 341
F G + L+ATD
Sbjct: 292 FREGDVNILLATD 304
Score = 140 (54.3 bits), Expect = 4.5e-36, Sum P(2) = 4.5e-36
Identities = 32/101 (31%), Positives = 58/101 (57%)
Query: 378 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGD 437
RGID ++ VINF++P++A Y+HRIGRTGRA G ++SLV + + ++ ++ +
Sbjct: 308 RGIDVPDISHVINFDLPRSADVYLHRIGRTGRAGKKGIAISLVEAHDQPMMARVERYIKE 367
Query: 438 DENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRE 478
+ E I L ++ + + +D+ K+ K AV++
Sbjct: 368 EVKE--RFIDG--LRPKHKKPVFKKKKKDIKKTADKGAVKK 404
>TIGR_CMR|VC_0660 [details] [associations]
symbol:VC_0660 "ATP-dependent RNA helicase SrmB"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0003676 GO:GO:0016070
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 OMA:PLAMDQR
KO:K05590 ProtClustDB:PRK11192 PIR:F82295 RefSeq:NP_230309.1
ProteinModelPortal:Q9KU63 DNASU:2615450 GeneID:2615450
KEGG:vch:VC0660 PATRIC:20080435 Uniprot:Q9KU63
Length = 423
Score = 300 (110.7 bits), Expect = 4.5e-36, Sum P(2) = 4.5e-36
Identities = 93/313 (29%), Positives = 151/313 (48%)
Query: 31 LGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFN 90
L LD L+ A+ + G +PT +Q +IP L+G+DV+A A TG+GKT A+++P L L +
Sbjct: 8 LELDPILLEAIEEMGFSRPTQVQAEAIPQALDGRDVLASAPTGTGKTAAFVIPALQYLLD 67
Query: 91 ESSPKSKLAPAA-LVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAA 149
P+ K PA L+L PTREL QV + AL + +L + +T + +
Sbjct: 68 --FPRRKAGPARILILTPTRELAMQVAEQAQALAK----NTRLNIFTITGGVQYQEHADI 121
Query: 150 LAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVI 209
LA DIV+ATPG + + + ++ ++ L+LDEAD +L G+ + LS
Sbjct: 122 LATTQDIVVATPGRLLEYIDAERFDCRA----IEWLILDEADRMLDMGFGPTVDRLSTEC 177
Query: 210 PRGCQCLLMSAT-SSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERD 268
Q LL SAT V+ +L +P + + + E K + Q W ++
Sbjct: 178 RWRKQTLLFSATLEGRGVEGFTADLLKDPAHV---DAEPPRRE--RKKISQ-WYHRADDM 231
Query: 269 KXXXXXXXXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEE 328
+++++F T + L+ LEK I A + E+PQ+ R + +
Sbjct: 232 PHKVELLKKILTEQAERSIVFLKTRERLADLRAELEKAQIPCAWIQGEMPQDRRNNAISR 291
Query: 329 FNAGLFDYLIATD 341
F G + L+ATD
Sbjct: 292 FREGDVNILLATD 304
Score = 140 (54.3 bits), Expect = 4.5e-36, Sum P(2) = 4.5e-36
Identities = 32/101 (31%), Positives = 58/101 (57%)
Query: 378 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGD 437
RGID ++ VINF++P++A Y+HRIGRTGRA G ++SLV + + ++ ++ +
Sbjct: 308 RGIDVPDISHVINFDLPRSADVYLHRIGRTGRAGKKGIAISLVEAHDQPMMARVERYIKE 367
Query: 438 DENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRE 478
+ E I L ++ + + +D+ K+ K AV++
Sbjct: 368 EVKE--RFIDG--LRPKHKKPVFKKKKKDIKKTADKGAVKK 404
>TIGR_CMR|BA_4509 [details] [associations]
symbol:BA_4509 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:198094 "Bacillus anthracis str. Ames" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008152
"metabolic process" evidence=ISS] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:AE016879 EMBL:AE017334
EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268806 OMA:YAHVEPK HSSP:P10081
RefSeq:NP_846734.1 RefSeq:YP_021153.1 RefSeq:YP_030436.1
ProteinModelPortal:Q81LV0 SMR:Q81LV0
EnsemblBacteria:EBBACT00000013143 EnsemblBacteria:EBBACT00000016547
EnsemblBacteria:EBBACT00000022918 GeneID:1088235 GeneID:2818505
GeneID:2850064 KEGG:ban:BA_4509 KEGG:bar:GBAA_4509 KEGG:bat:BAS4187
ProtClustDB:CLSK887589 BioCyc:BANT260799:GJAJ-4244-MONOMER
BioCyc:BANT261594:GJ7F-4386-MONOMER Uniprot:Q81LV0
Length = 436
Score = 313 (115.2 bits), Expect = 5.6e-36, Sum P(2) = 5.6e-36
Identities = 87/306 (28%), Positives = 148/306 (48%)
Query: 37 LVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKS 96
L+ A+ + +PT IQQ P++ +G V+ +++TGSGKT AYLLP L+R+ N +
Sbjct: 15 LIDAVRELRFTEPTGIQQKIFPVVKKGVSVIGQSQTGSGKTHAYLLPTLNRI-NPGREEV 73
Query: 97 KLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDI 156
+L ++ PTREL QQ+Y E++ L + C + L L P I
Sbjct: 74 QL----VITAPTRELAQQIYEEIVKLTKFCAEDQMITARCLIGGTDKQRSIEKLKKQPHI 129
Query: 157 VIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCL 216
V+ TPG + + L F +++DEADL+L G+ D+ ++A +P+ Q L
Sbjct: 130 VVGTPGRIKDLVEEQAL----FVHKANTIIVDEADLMLDMGFIHDVDKIAARMPKNLQML 185
Query: 217 LMSATSSSDVDKLKKLILHNP-YILTLPEVGDVKDEVIPKNVQQFWISCSERDKXXXXXX 275
+ SAT + K + NP +I P+ +V N++ + + R+K
Sbjct: 186 VFSATIPQKLKPFLKKYMENPEHIHINPK------QVAAGNIEHYLVPSKHRNKIDLVNK 239
Query: 276 XXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFD 335
A++FTNT MA ++ L + G+K ++ +L R ++++ F
Sbjct: 240 MLLQFKPYL-AVVFTNTKKMADQVADGLMERGLKVGRIHGDLSPRDRKKMMKQIRDLEFQ 298
Query: 336 YLIATD 341
Y++ATD
Sbjct: 299 YIVATD 304
Score = 122 (48.0 bits), Expect = 5.6e-36, Sum P(2) = 5.6e-36
Identities = 28/85 (32%), Positives = 46/85 (54%)
Query: 355 GHVDSRKSKKHPKAKLDSEFGVV-------RGIDFKNVHTVINFEMPQNAAGYVHRIGRT 407
G + R KK K D EF + RGID + + VIN+E+P + +VHR+GRT
Sbjct: 278 GDLSPRDRKKMMKQIRDLEFQYIVATDLAARGIDIEGISHVINYELPSDLDFFVHRVGRT 337
Query: 408 GRAYNTGASVSLVSPDEMKIFEEIK 432
RA ++G +V++ P + + ++
Sbjct: 338 ARAGHSGIAVTIYDPANEEALDSLE 362
Score = 37 (18.1 bits), Expect = 4.5e-27, Sum P(2) = 4.5e-27
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 349 DQSDEGGHVDSRKSKKHPKAKLD 371
D+ + G RKS+K P +LD
Sbjct: 377 DEWADLGERRRRKSRKKPNDELD 399
>POMBASE|SPCC10H11.01 [details] [associations]
symbol:prp11 "ATP-dependent RNA helicase Prp11"
species:4896 "Schizosaccharomyces pombe" [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=ISO] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005681
"spliceosomal complex" evidence=ISO] [GO:0005829 "cytosol"
evidence=IDA] [GO:0044732 "mitotic spindle pole body" evidence=IDA]
[GO:0045292 "mRNA cis splicing, via spliceosome" evidence=ISO]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 PomBase:SPCC10H11.01 GO:GO:0005829 GO:GO:0005524
EMBL:CU329672 GenomeReviews:CU329672_GR GO:GO:0044732 GO:GO:0005681
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 GO:GO:0045292 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K12811 HOGENOM:HOG000007229 EMBL:AB027964
RefSeq:NP_587856.1 ProteinModelPortal:Q9P7C7 DIP:DIP-59804N
IntAct:Q9P7C7 PRIDE:Q9P7C7 EnsemblFungi:SPCC10H11.01.1
GeneID:2538936 KEGG:spo:SPCC10H11.01 OMA:SLVIIYN OrthoDB:EOG40CMR1
NextBio:20800113 Uniprot:Q9P7C7
Length = 1014
Score = 321 (118.1 bits), Expect = 8.5e-36, Sum P(2) = 8.5e-36
Identities = 91/309 (29%), Positives = 146/309 (47%)
Query: 32 GLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNE 91
GL + + +N G +KPT IQ +IP I G+DV+ AKTGSGKT A+LLP+ + ++
Sbjct: 424 GLSAQTISVINSLGYEKPTSIQAQAIPAITSGRDVIGVAKTGSGKTIAFLLPMFRHIKDQ 483
Query: 92 SSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAALA 151
K+ P A+++ PTREL Q++ E ++L + ++ P D A L
Sbjct: 484 RPLKTGEGPIAIIMTPTRELAVQIFRECKPFLKL----LNIRACCAYGGAPIKDQIADLK 539
Query: 152 GPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPR 211
+IV+ TPG M LS + + LVLDEAD + G+E + + I
Sbjct: 540 RGAEIVVCTPGRMIDVLSANAGRVTNLH-RCTYLVLDEADRMFDLGFEPQVMRIINNIRP 598
Query: 212 GCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKXX 271
Q +L SAT ++ L + +L P +T+ V EV + + + S+ +
Sbjct: 599 DRQTVLFSATFPRAMEALARKVLKKPVEITVGGRSVVASEV--EQIVEVRPEESKFSRLL 656
Query: 272 XXXXXXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNA 331
+ + L+F + + A L L K G S ++ Q+ R + ++ A
Sbjct: 657 ELLGELYNNQLDVRTLVFVDRQESADALLSDLMKRGYTSNSIHGGKDQHDRDSTISDYKA 716
Query: 332 GLFDYLIAT 340
G+FD LIAT
Sbjct: 717 GVFDVLIAT 725
Score = 144 (55.7 bits), Expect = 8.5e-36, Sum P(2) = 8.5e-36
Identities = 30/84 (35%), Positives = 48/84 (57%)
Query: 348 KDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRT 407
KDQ D + K+ S V RG+D K++ V+N++ P + YVHR+GRT
Sbjct: 702 KDQHDRDSTISDYKAGVFDVLIATSV--VARGLDVKSLQLVVNYDCPNHMEDYVHRVGRT 759
Query: 408 GRAYNTGASVSLVSPDEMKIFEEI 431
GRA +TG +V+ ++P++ K +I
Sbjct: 760 GRAGHTGVAVTFITPEQEKYAVDI 783
>TAIR|locus:504955106 [details] [associations]
symbol:emb1138 "embryo defective 1138" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0009507 "chloroplast"
evidence=ISM;IDA] [GO:0009793 "embryo development ending in seed
dormancy" evidence=NAS] [GO:0009570 "chloroplast stroma"
evidence=IDA] [GO:0016020 "membrane" evidence=IDA] [GO:0009941
"chloroplast envelope" evidence=IDA] InterPro:IPR001650
InterPro:IPR001878 InterPro:IPR011545 InterPro:IPR012562
Pfam:PF00098 Pfam:PF00270 Pfam:PF00271 Pfam:PF08152 PROSITE:PS00039
PROSITE:PS50158 PROSITE:PS51194 SMART:SM00343 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR
GO:GO:0009570 GO:GO:0016020 GO:GO:0046872 GO:GO:0008270
GO:GO:0009941 GO:GO:0003723 EMBL:AF058914 Gene3D:4.10.60.10
SUPFAM:SSF57756 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268805 UniGene:At.23875 EMBL:AJ010457 EMBL:AC137518
EMBL:AY080625 EMBL:AY091068 EMBL:AY094485 EMBL:AY123000
EMBL:AY128278 EMBL:BT000713 EMBL:BT002289 EMBL:BT002456
EMBL:AY102126 EMBL:BT004533 EMBL:AK229821 IPI:IPI00523172
IPI:IPI00656967 PIR:T01202 PIR:T51738 RefSeq:NP_001031943.1
RefSeq:NP_680225.2 UniGene:At.66764 ProteinModelPortal:Q8L7S8
SMR:Q8L7S8 STRING:Q8L7S8 PaxDb:Q8L7S8 PRIDE:Q8L7S8
EnsemblPlants:AT5G26742.2 GeneID:832713 KEGG:ath:AT5G26742
GeneFarm:1570 TAIR:At5g26742 InParanoid:Q8L7S8 OMA:ISHEQGW
PhylomeDB:Q8L7S8 ProtClustDB:CLSN2680279 Genevestigator:Q8L7S8
Uniprot:Q8L7S8
Length = 748
Score = 343 (125.8 bits), Expect = 1.3e-35, Sum P(2) = 1.3e-35
Identities = 100/317 (31%), Positives = 162/317 (51%)
Query: 31 LGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFN 90
L L RL +L K+GI IQ+A + L+G+D++ARAKTG+GKT A+ +P++ RL
Sbjct: 107 LSLPQRLEESLEKRGITHLFPIQRAVLVPALQGRDIIARAKTGTGKTLAFGIPIIKRLTE 166
Query: 91 ESSP-----KSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASD 145
E+ +S P LVL PTREL +QV E+ + L V + + +
Sbjct: 167 EAGDYTAFRRSGRLPKFLVLAPTRELAKQVEKEIK------ESAPYLSTVCVYGGVSYTI 220
Query: 146 LRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLKA 204
++AL D+V+ TPG + +++ +S ++ LVLDEAD +L+ G+E+ +++
Sbjct: 221 QQSALTRGVDVVVGTPGRI-----IDLIEGRSLKLGEVEYLVLDEADQMLAVGFEEAVES 275
Query: 205 LSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISC 264
+ +P Q +L SAT + V KL + L NP L + VGD +DE + + ++ + I+
Sbjct: 276 ILENLPTKRQSMLFSATMPTWVKKLARKYLDNP--LNIDLVGD-QDEKLAEGIKLYAIAT 332
Query: 265 SERDKXXXXXXXXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLH 324
+ K K ++FT T A + L L I + L+ ++ Q+ R
Sbjct: 333 TSTSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALSN-SIATEALHGDISQHQRER 391
Query: 325 ILEEFNAGLFDYLIATD 341
L F G F L+ATD
Sbjct: 392 TLNAFRQGKFTVLVATD 408
Score = 112 (44.5 bits), Expect = 1.3e-35, Sum P(2) = 1.3e-35
Identities = 21/59 (35%), Positives = 36/59 (61%)
Query: 378 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVG 436
RG+D NV VI++E+P + +VHR GRTGRA G+++ + + + + ++ VG
Sbjct: 412 RGLDIPNVDLVIHYELPNDPETFVHRSGRTGRAGKEGSAILMHTSSQKRTVRSLERDVG 470
>TIGR_CMR|CPS_4097 [details] [associations]
symbol:CPS_4097 "ATP-dependent RNA helicase SrmB"
species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0008186
"RNA-dependent ATPase activity" evidence=ISS] [GO:0042254 "ribosome
biogenesis" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
EMBL:CP000083 GenomeReviews:CP000083_GR InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807 KO:K05590
ProtClustDB:PRK11192 RefSeq:YP_270752.2 ProteinModelPortal:Q47WS0
STRING:Q47WS0 PRIDE:Q47WS0 GeneID:3520098 KEGG:cps:CPS_4097
PATRIC:21471063 OMA:YLDKGHF BioCyc:CPSY167879:GI48-4110-MONOMER
Uniprot:Q47WS0
Length = 430
Score = 301 (111.0 bits), Expect = 1.5e-35, Sum P(2) = 1.5e-35
Identities = 100/316 (31%), Positives = 154/316 (48%)
Query: 33 LDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNES 92
LD L+ ++NK G KPT IQ+ IP + GKDV+A A TG+GKT A+LLP+ L +
Sbjct: 20 LDSELLASINKIGYTKPTSIQELVIPQAMVGKDVLASAPTGTGKTAAFLLPIAQHLLDY- 78
Query: 93 SPKSKLA-PAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAALA 151
P++K P L+L PTREL Q+ + L EL K +K +T + L
Sbjct: 79 -PRTKPGFPRVLILTPTRELAIQIGEDSEQLTELTK----IKTGVITGGVNYGSHADILT 133
Query: 152 GPPDIVIATPGCMPKCLSTGVLQSKSF-SDSLKILVLDEADLLLSYGYEDDLKALSAVIP 210
DI++ATPG + L ++++ F + ++ILVLDEAD +L G+ + + + A
Sbjct: 134 STTDILVATPG---RLLE--YIENEQFDAREIEILVLDEADRMLDLGFSETINRIVAEAR 188
Query: 211 RGCQCLLMSAT-SSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSE--R 267
Q +L SAT S V + +L+ P L E + E K V W+ ++
Sbjct: 189 WRKQTMLFSATLESPGVQLFAEEVLNEPVFL---ESKPSRKE---KAVIHQWLHLADDAN 242
Query: 268 DKXXXXXXXXXXXXVQKKALIFTNTIDMAFRL--KLFLEKFGIKSAILNAELPQNSRLHI 325
K V++ ++F N + L KL+ E+ + L ++PQ+ R
Sbjct: 243 HKLNLLVNTLKQEGVER-TVVFANKRETVQYLSGKLYAEE--LPCVWLEGKMPQDKRNKA 299
Query: 326 LEEFNAGLFDYLIATD 341
+E F G L+ATD
Sbjct: 300 IERFKKGEVKVLVATD 315
Score = 136 (52.9 bits), Expect = 1.5e-35, Sum P(2) = 1.5e-35
Identities = 25/57 (43%), Positives = 38/57 (66%)
Query: 378 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSF 434
RG+D ++ VINF+MP+ Y+HRIGRTGRA G ++SLV +M + +I+ +
Sbjct: 319 RGLDIDDISHVINFDMPRKVDIYIHRIGRTGRAGKKGTAISLVEAHDMGVIGKIERY 375
>UNIPROTKB|Q8EJQ5 [details] [associations]
symbol:rhlB "ATP-dependent RNA helicase RhlB"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] HAMAP:MF_00661 InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR023554
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003723 EMBL:AE014299
GenomeReviews:AE014299_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268807 KO:K03732 ProtClustDB:PRK04837
RefSeq:NP_716045.1 ProteinModelPortal:Q8EJQ5 GeneID:1168284
KEGG:son:SO_0407 PATRIC:23520517 OMA:PANAERQ Uniprot:Q8EJQ5
Length = 439
Score = 314 (115.6 bits), Expect = 2.0e-35, Sum P(2) = 2.0e-35
Identities = 94/315 (29%), Positives = 157/315 (49%)
Query: 31 LGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFN 90
L L + AL + G + T IQ S+P++L+ KD+ +A+TG+GKT A+L+ + L +
Sbjct: 14 LPLHPEVKQALAENGFEFCTPIQALSLPVLLQSKDIAGQAQTGTGKTMAFLVATFNHLLS 73
Query: 91 ESSPKSKLA--PAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRA 148
S P+ + P A+++ PTREL Q+ + + L + +LKV + R
Sbjct: 74 SSIPEGRQLNQPRAIIMAPTRELAIQIAKDAILLAK----HTRLKVGIVYGGESYDVQRK 129
Query: 149 ALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAV 208
L DI+I T G + + G++ ++++ +VLDEAD + G+ D++ L
Sbjct: 130 VLDQGVDILIGTTGRIIDYVRQGIINL----NAIQAVVLDEADRMFDLGFIKDIRFLFRR 185
Query: 209 IPRGCQCL--LMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSE 266
+P Q L L SAT S V +L +++P +V +E KN+++ S+
Sbjct: 186 MPNADQRLNMLFSATLSMKVQELAYDHMNDPV-----KVEIAPEEKTSKNIKEEIFYPSQ 240
Query: 267 RDKXXXXXXXXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHIL 326
DK +K A++F+NT L +LE G + +L ++PQ R+ IL
Sbjct: 241 EDKMRLLLTLIEEDWPEK-AIVFSNTKHSCENLWSWLEGDGHRVGLLTGDVPQKKRIRIL 299
Query: 327 EEFNAGLFDYLIATD 341
E+F G D L+ATD
Sbjct: 300 EQFTQGQLDILVATD 314
Score = 117 (46.2 bits), Expect = 2.0e-35, Sum P(2) = 2.0e-35
Identities = 23/58 (39%), Positives = 34/58 (58%)
Query: 378 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 435
RG+ +V V N+++P + YVHRIGRTGRA N G SVS + I++++
Sbjct: 318 RGLHISDVSHVYNYDLPDDCEDYVHRIGRTGRAGNKGVSVSFACEEYALNLPAIETYI 375
>TIGR_CMR|SO_0407 [details] [associations]
symbol:SO_0407 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] HAMAP:MF_00661 InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR023554
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003723 EMBL:AE014299
GenomeReviews:AE014299_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268807 KO:K03732 ProtClustDB:PRK04837
RefSeq:NP_716045.1 ProteinModelPortal:Q8EJQ5 GeneID:1168284
KEGG:son:SO_0407 PATRIC:23520517 OMA:PANAERQ Uniprot:Q8EJQ5
Length = 439
Score = 314 (115.6 bits), Expect = 2.0e-35, Sum P(2) = 2.0e-35
Identities = 94/315 (29%), Positives = 157/315 (49%)
Query: 31 LGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFN 90
L L + AL + G + T IQ S+P++L+ KD+ +A+TG+GKT A+L+ + L +
Sbjct: 14 LPLHPEVKQALAENGFEFCTPIQALSLPVLLQSKDIAGQAQTGTGKTMAFLVATFNHLLS 73
Query: 91 ESSPKSKLA--PAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRA 148
S P+ + P A+++ PTREL Q+ + + L + +LKV + R
Sbjct: 74 SSIPEGRQLNQPRAIIMAPTRELAIQIAKDAILLAK----HTRLKVGIVYGGESYDVQRK 129
Query: 149 ALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAV 208
L DI+I T G + + G++ ++++ +VLDEAD + G+ D++ L
Sbjct: 130 VLDQGVDILIGTTGRIIDYVRQGIINL----NAIQAVVLDEADRMFDLGFIKDIRFLFRR 185
Query: 209 IPRGCQCL--LMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSE 266
+P Q L L SAT S V +L +++P +V +E KN+++ S+
Sbjct: 186 MPNADQRLNMLFSATLSMKVQELAYDHMNDPV-----KVEIAPEEKTSKNIKEEIFYPSQ 240
Query: 267 RDKXXXXXXXXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHIL 326
DK +K A++F+NT L +LE G + +L ++PQ R+ IL
Sbjct: 241 EDKMRLLLTLIEEDWPEK-AIVFSNTKHSCENLWSWLEGDGHRVGLLTGDVPQKKRIRIL 299
Query: 327 EEFNAGLFDYLIATD 341
E+F G D L+ATD
Sbjct: 300 EQFTQGQLDILVATD 314
Score = 117 (46.2 bits), Expect = 2.0e-35, Sum P(2) = 2.0e-35
Identities = 23/58 (39%), Positives = 34/58 (58%)
Query: 378 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 435
RG+ +V V N+++P + YVHRIGRTGRA N G SVS + I++++
Sbjct: 318 RGLHISDVSHVYNYDLPDDCEDYVHRIGRTGRAGNKGVSVSFACEEYALNLPAIETYI 375
>UNIPROTKB|Q0C354 [details] [associations]
symbol:rhlE "ATP-dependent RNA helicase RhlE"
species:228405 "Hyphomonas neptunium ATCC 15444" [GO:0006139
"nucleobase-containing compound metabolic process" evidence=ISS]
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 EMBL:CP000158
GenomeReviews:CP000158_GR GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927
RefSeq:YP_759839.1 ProteinModelPortal:Q0C354 STRING:Q0C354
GeneID:4290097 KEGG:hne:HNE_1118 PATRIC:32215041 OMA:KHGSEKL
BioCyc:HNEP228405:GI69-1155-MONOMER Uniprot:Q0C354
Length = 464
Score = 320 (117.7 bits), Expect = 4.5e-35, Sum P(2) = 4.5e-35
Identities = 95/312 (30%), Positives = 146/312 (46%)
Query: 31 LGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFN 90
LGL R++ +L K G PT IQ+ +IPL+++G+D+V A+TG+GKT A+ P+L RL
Sbjct: 12 LGLTGRILTSLTKAGYTAPTPIQEQAIPLVIQGRDIVGLAQTGTGKTLAFAAPILDRLSR 71
Query: 91 ESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAAL 150
+SP LVL PTREL Q+ + + L+VV + L
Sbjct: 72 NASPAPVRGTRVLVLAPTRELAGQIATSFGTY----GAGLNLRVVMVCGGAKIGGQIRQL 127
Query: 151 AGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLKALSAVI 209
I++ATPG + +++ ++ S D ++ L+LDEAD +L G+ L+A++ +
Sbjct: 128 ERGAHILVATPGRL-----IDLMEQRAVSLDKVETLILDEADQMLDLGFIHALRAIAKNV 182
Query: 210 PRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDK 269
P Q L SAT V+ L L NP EV ++Q + +K
Sbjct: 183 PSKRQTLFFSATMPKAVESLAATFLRNP-----AEVSVAPPATTAGRIEQRVCFVEQPEK 237
Query: 270 XXXXXXXXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEF 329
+ + A++FT T A + L K I S ++ Q+ R LE F
Sbjct: 238 ASLLIEKIRDPEL-RSAIVFTRTKHGADGVVKRLAKADIDSVAIHGNKSQSQREKALEAF 296
Query: 330 NAGLFDYLIATD 341
AG L+ATD
Sbjct: 297 KAGRVPILVATD 308
Score = 114 (45.2 bits), Expect = 4.5e-35, Sum P(2) = 4.5e-35
Identities = 24/59 (40%), Positives = 33/59 (55%)
Query: 378 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVG 436
RGI + VIN+++P +VHRIGRT RA N+G ++S S DE I+ G
Sbjct: 312 RGIHVDALTHVINYDLPDVPEQFVHRIGRTARAGNSGVAISFCSRDERPTLRAIEKLTG 370
Score = 41 (19.5 bits), Expect = 2.0e-27, Sum P(2) = 2.0e-27
Identities = 27/88 (30%), Positives = 35/88 (39%)
Query: 523 LRDVPDY-LLDAKTQEACKMVKLARAAMGNKN-----SSRRQGPR-RKFRKSDPLK---- 571
L V +Y L D Q ++ + ARA GN SR + P R K LK
Sbjct: 319 LTHVINYDLPDVPEQFVHRIGRTARA--GNSGVAISFCSRDERPTLRAIEKLTGLKLAPN 376
Query: 572 --SFSAEPTKRAGKGRMKREGRNGDDTG 597
S EP ++ GK + R G G G
Sbjct: 377 GVSLPDEPLRKPGKPQGNRSGNGGGRGG 404
>UNIPROTKB|P21507 [details] [associations]
symbol:srmB "SrmB, DEAD-box RNA helicase" species:83333
"Escherichia coli K-12" [GO:0033592 "RNA strand annealing activity"
evidence=IDA] [GO:0030687 "preribosome, large subunit precursor"
evidence=IDA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IDA] [GO:0000027 "ribosomal large subunit assembly"
evidence=IGI;IMP] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:U00096
EMBL:AP009048 GenomeReviews:AP009048_GR GenomeReviews:U00096_GR
EMBL:D64044 GO:GO:0030687 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 GO:GO:0000027 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0033592 EMBL:D13169
OMA:PLAMDQR HOGENOM:HOG000268807 PDB:2YJT PDBsum:2YJT EMBL:X14152
PIR:G65035 RefSeq:NP_417071.1 RefSeq:YP_490804.1
ProteinModelPortal:P21507 SMR:P21507 DIP:DIP-10920N IntAct:P21507
MINT:MINT-1225512 PRIDE:P21507 EnsemblBacteria:EBESCT00000003180
EnsemblBacteria:EBESCT00000015098 GeneID:12934372 GeneID:947055
KEGG:ecj:Y75_p2529 KEGG:eco:b2576 PATRIC:32120551 EchoBASE:EB0968
EcoGene:EG10975 KO:K05590 ProtClustDB:PRK11192
BioCyc:EcoCyc:EG10975-MONOMER BioCyc:ECOL316407:JW2560-MONOMER
Genevestigator:P21507 Uniprot:P21507
Length = 444
Score = 311 (114.5 bits), Expect = 4.7e-35, Sum P(2) = 4.7e-35
Identities = 93/313 (29%), Positives = 145/313 (46%)
Query: 31 LGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFN 90
L LD L+ AL KG +PT IQ A+IP L+G+DV+ A TG+GKT AYLLP L L +
Sbjct: 9 LELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQHLLD 68
Query: 91 ESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAAL 150
KS P L+L PTREL QV EL K L + +T + +
Sbjct: 69 FPRKKSG-PPRILILTPTRELAMQVSDHAR---ELAK-HTHLDIATITGGVAYMNHAEVF 123
Query: 151 AGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLKALSAVI 209
+ DIV+AT G + L ++ ++F +++ L+LDEAD +L G+ D++ ++
Sbjct: 124 SENQDIVVATTG---RLLQ--YIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGET 178
Query: 210 PRGCQCLLMSATSSSD-VDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERD 268
Q LL SAT D + + +L +P EV K + Q++ + +
Sbjct: 179 RWRKQTLLFSATLEGDAIQDFAERLLEDPV-----EVSANPSTRERKKIHQWYYRADDLE 233
Query: 269 KXXXXXXXXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEE 328
++++F + L +L + GI + L E+ Q R ++
Sbjct: 234 HKTALLVHLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKR 293
Query: 329 FNAGLFDYLIATD 341
G + L+ATD
Sbjct: 294 LTEGRVNVLVATD 306
Score = 121 (47.7 bits), Expect = 4.7e-35, Sum P(2) = 4.7e-35
Identities = 23/58 (39%), Positives = 36/58 (62%)
Query: 378 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 435
RGID +V V NF+MP++ Y+HRIGRT RA G ++SLV + + ++ ++
Sbjct: 310 RGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVGRYI 367
Score = 41 (19.5 bits), Expect = 1.1e-26, Sum P(2) = 1.1e-26
Identities = 20/84 (23%), Positives = 35/84 (41%)
Query: 520 ASHLRDVPDYLLDAKTQEACKMVKLARAAMGNKNSSRRQGPRRKFRKSDPLKSFSAEP-- 577
A L + D+LL K + AR + +R ++ + S + + AE
Sbjct: 348 AISLVEAHDHLLLGKVGRYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVLAKRAEKKK 407
Query: 578 TKRAGKGRMKREGRNGDDTGKHKK 601
K K R+K+ R+ + GK +K
Sbjct: 408 AKEKEKPRVKKRHRDTKNIGKRRK 431
>TAIR|locus:2065215 [details] [associations]
symbol:AT2G47330 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0003723 EMBL:AC002337 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 UniGene:At.12226 UniGene:At.25582
HOGENOM:HOG000268793 KO:K12835 EMBL:AY057700 EMBL:AY124871
IPI:IPI00516775 PIR:H84913 RefSeq:NP_566099.1
ProteinModelPortal:O22907 SMR:O22907 STRING:O22907 PaxDb:O22907
PRIDE:O22907 EnsemblPlants:AT2G47330.1 GeneID:819346
KEGG:ath:AT2G47330 GeneFarm:942 TAIR:At2g47330 InParanoid:O22907
OMA:QEYANLM PhylomeDB:O22907 ProtClustDB:CLSN2688982
Genevestigator:O22907 GermOnline:AT2G47330 Uniprot:O22907
Length = 760
Score = 332 (121.9 bits), Expect = 6.0e-35, Sum P(3) = 6.0e-35
Identities = 96/313 (30%), Positives = 156/313 (49%)
Query: 32 GLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNE 91
G +++ A+ K+ +KPT IQ ++P++L G+DV+ AKTGSGKT A++LP++ + ++
Sbjct: 234 GFSSQIMSAIKKQAYEKPTAIQCQALPIVLSGRDVIGIAKTGSGKTAAFVLPMIVHIMDQ 293
Query: 92 SSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAALA 151
+ P ++ PTREL Q++ E + G L+V + M + L
Sbjct: 294 PELQRDEGPIGVICAPTRELAHQIFLEAKKFSK-AYG---LRVSAVYGGMSKHEQFKELK 349
Query: 152 GPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPR 211
+IV+ATPG + L L S LVLDEAD + G+E ++++ I
Sbjct: 350 AGCEIVVATPGRLIDMLKMKALTMMRAS----YLVLDEADRMFDLGFEPQVRSIVGQIRP 405
Query: 212 GCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKXX 271
Q LL SAT V+KL + IL +P +T+ EVG +++ Q + S+ +K
Sbjct: 406 DRQTLLFSATMPWKVEKLAREILSDPIRVTVGEVGMANEDI----TQVVNVIPSDAEKLP 461
Query: 272 XXXXXXXXXXVQKKALIFTN---TIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEE 328
+ L+F + T+D +L L F K A L+ + Q SR+ L++
Sbjct: 462 WLLEKLPGMIDEGDVLVFASKKATVD-EIEAQLTLNSF--KVAALHGDKDQASRMETLQK 518
Query: 329 FNAGLFDYLIATD 341
F +G+ LIATD
Sbjct: 519 FKSGVHHVLIATD 531
Score = 117 (46.2 bits), Expect = 6.0e-35, Sum P(3) = 6.0e-35
Identities = 31/96 (32%), Positives = 54/96 (56%)
Query: 347 EKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGR 406
+KDQ+ + KS H + ++ RG+D K++ TV+N+++ ++ +VHRIGR
Sbjct: 506 DKDQASRMETLQKFKSGVH-HVLIATDVAA-RGLDIKSLKTVVNYDIAKDMDMHVHRIGR 563
Query: 407 TGRAYNT-GASVSLVSPDEMKIFEE-IKSFVGDDEN 440
TGRA + G + +LV+ E + E + S V +N
Sbjct: 564 TGRAGDRDGVAYTLVTQREARFAGELVNSLVAAGQN 599
Score = 40 (19.1 bits), Expect = 6.0e-35, Sum P(3) = 6.0e-35
Identities = 7/17 (41%), Positives = 11/17 (64%)
Query: 582 GKGRMKREGRNGDDTGK 598
G+ + KR+GR G G+
Sbjct: 612 GRFKSKRDGRKGGKKGR 628
>SGD|S000003931 [details] [associations]
symbol:DRS1 "Nucleolar DEAD-box protein required for ribosome
assembly and function" species:4932 "Saccharomyces cerevisiae"
[GO:0000027 "ribosomal large subunit assembly" evidence=TAS]
[GO:0005730 "nucleolus" evidence=IEA;IDA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0042254
"ribosome biogenesis" evidence=IEA] [GO:0030687 "preribosome, large
subunit precursor" evidence=IDA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0006364 "rRNA processing" evidence=TAS]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=TAS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 SGD:S000003931 GO:GO:0005524 GO:GO:0005730
EMBL:BK006945 GO:GO:0003723 GO:GO:0030687 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 EMBL:X91488
GO:GO:0004004 GO:GO:0000027 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00550000074997 HOGENOM:HOG000265456
KO:K13181 OrthoDB:EOG4B01XM EMBL:L00683 EMBL:Z73113 PIR:S64750
RefSeq:NP_013093.1 ProteinModelPortal:P32892 SMR:P32892
DIP:DIP-6471N IntAct:P32892 MINT:MINT-648259 STRING:P32892
PaxDb:P32892 PeptideAtlas:P32892 EnsemblFungi:YLL008W GeneID:850652
KEGG:sce:YLL008W CYGD:YLL008w OMA:RIRKRDH NextBio:966605
Genevestigator:P32892 GermOnline:YLL008W Uniprot:P32892
Length = 752
Score = 330 (121.2 bits), Expect = 7.8e-35, Sum P(3) = 7.8e-35
Identities = 99/316 (31%), Positives = 152/316 (48%)
Query: 31 LGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFN 90
L L ++ L G KP+ IQ A+IP+ L GKD++A A TGSGKT A+++P++ RL
Sbjct: 236 LSLSRPVLKGLASLGYVKPSPIQSATIPIALLGKDIIAGAVTGSGKTAAFMIPIIERLLY 295
Query: 91 ESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAAL 150
+ P + +VL+PTREL QV + G + + L
Sbjct: 296 K--PAKIASTRVIVLLPTRELAIQVADVGKQIARFVSG---ITFGLAVGGLNLRQQEQML 350
Query: 151 AGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLKALSAVI 209
PDIVIATPG + + + S SF+ DS++ILV+DEAD +L G++D+L + ++
Sbjct: 351 KSRPDIVIATPG---RFIDH-IRNSASFNVDSVEILVMDEADRMLEEGFQDELNEIMGLL 406
Query: 210 PRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDK 269
P Q LL SAT +S + L L L P + + D + K Q+F + +RD
Sbjct: 407 PSNRQNLLFSATMNSKIKSLVSLSLKKPVRIMI----DPPKKAATKLTQEF-VRIRKRDH 461
Query: 270 XXXXXXXXXXXXV----QKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHI 325
+ QK+ ++F + A RL++ + G+ L+ L Q RL
Sbjct: 462 LKPALLFNLIRKLDPTGQKRIVVFVARKETAHRLRIIMGLLGMSVGELHGSLTQEQRLDS 521
Query: 326 LEEFNAGLFDYLIATD 341
+ +F LI TD
Sbjct: 522 VNKFKNLEVPVLICTD 537
Score = 118 (46.6 bits), Expect = 7.8e-35, Sum P(3) = 7.8e-35
Identities = 37/119 (31%), Positives = 58/119 (48%)
Query: 378 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLV---SPDEMKIFEEIKSF 434
RG+D + VIN++MP++ Y+HR+GRT RA G SV+ V S D + IKS
Sbjct: 541 RGLDIPKIEVVINYDMPKSYEIYLHRVGRTARAGREGRSVTFVGESSQDRSIVRAAIKSV 600
Query: 435 VGDDENEDSNIIAPFPLLAQNA----VESLRYRAEDVAKSVTKIAVRESRAQD-LRNEI 488
+EN+ + L +N +E E + ++ I V E ++ LR E+
Sbjct: 601 ---EENKS---LTQGKALGRNVDWVQIEETNKLVESMNDTIEDILVEEKEEKEILRAEM 653
Score = 40 (19.1 bits), Expect = 7.8e-35, Sum P(3) = 7.8e-35
Identities = 16/63 (25%), Positives = 26/63 (41%)
Query: 540 KMVKLARAAMGNKNSSRRQGPRRKFRKSDPLKSFSAEPTKRAGKGRMKREGRNGDDTGKH 599
K K+ A NK + + +R+ K+D + S TK +R + T +
Sbjct: 684 KNSKVLGALSRNKKVTNSKKRKREEAKADGNGARSYRKTKTDRIADQERTFKKQKSTNSN 743
Query: 600 KKK 602
KKK
Sbjct: 744 KKK 746
>TIGR_CMR|SPO_1443 [details] [associations]
symbol:SPO_1443 "ATP-dependent RNA helicase RhlE"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] [GO:0008152 "metabolic process"
evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:CP000031
GenomeReviews:CP000031_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927 RefSeq:YP_166684.1
ProteinModelPortal:Q5LTH1 GeneID:3193638 KEGG:sil:SPO1443
PATRIC:23376201 OMA:VPTHAED ProtClustDB:CLSK933557 Uniprot:Q5LTH1
Length = 471
Score = 289 (106.8 bits), Expect = 1.1e-34, Sum P(3) = 1.1e-34
Identities = 89/318 (27%), Positives = 154/318 (48%)
Query: 31 LGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFN 90
L L+ +++ A+ + G + PT IQ +IP LEG+DV+ A+TG+GKT ++ LP++ L
Sbjct: 7 LNLNPKVLKAIEEAGYETPTPIQAGAIPPALEGRDVLGIAQTGTGKTASFTLPMI-TLLA 65
Query: 91 ESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAAL 150
++++ P +LVL PTREL QV + ++L L + + A +
Sbjct: 66 RGRARARM-PRSLVLCPTRELAAQVAEN----FDTYTKHLKLTKALLIGGVSFKEQDALI 120
Query: 151 AGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIP 210
D++IATPG + G K ++I+V+DEAD +L G+ D++ + ++ P
Sbjct: 121 DRGVDVLIATPGRLLDHFERG----KLLLTGVQIMVVDEADRMLDMGFIPDIERIFSLTP 176
Query: 211 RGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKX 270
Q L SAT + +++++ L P + + E I + V F S RD+
Sbjct: 177 FTRQTLFFSATMAPEIERITNTFLSAPARIEVARQATAS-ETIEQGVVLF--KGSRRDRE 233
Query: 271 XXXXXXXXXXXVQKK------ALIFTNT-IDMAFRLKLFLEKFGIKSAILNAELPQNSRL 323
+ + A+IF N D+ K L+K+G +A ++ +L Q+ R
Sbjct: 234 ASEKRAVLRALIDAEGEKCTNAIIFCNRKTDVDIVAKS-LQKYGYDAAPIHGDLDQSQRT 292
Query: 324 HILEEFNAGLFDYLIATD 341
L+ F G L+A+D
Sbjct: 293 RTLDGFREGKLRLLVASD 310
Score = 128 (50.1 bits), Expect = 1.1e-34, Sum P(3) = 1.1e-34
Identities = 25/61 (40%), Positives = 37/61 (60%)
Query: 378 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGD 437
RG+D +V V NF++P + YVHRIGRTGRA G +++L P + K + I+ +
Sbjct: 314 RGLDVPSVSHVFNFDVPGHPEDYVHRIGRTGRAGRDGKAITLCIPRDEKALDAIEKLIQK 373
Query: 438 D 438
D
Sbjct: 374 D 374
Score = 58 (25.5 bits), Expect = 1.1e-34, Sum P(3) = 1.1e-34
Identities = 23/80 (28%), Positives = 40/80 (50%)
Query: 524 RDVPDYLLDAKTQEA--CKMVKLARAAMGNK----NSSRRQGPRRKFRKSDPLKSFSAEP 577
+D+P A+T+E K + + A +K ++ +R+ +R+ K DP+K E
Sbjct: 373 KDIPRLENPARTEEKPEAKPRREEKPARADKPARSDADKREPVKREADKRDPVKR---EA 429
Query: 578 TKRAGKGRMKREGRNGDDTG 597
KR KG +R+ + DD G
Sbjct: 430 DKRDRKGGERRDRK--DDRG 447
>UNIPROTKB|G3V727 [details] [associations]
symbol:Ddx47 "Protein Ddx47" species:10116 "Rattus
norvegicus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0006364 "rRNA processing" evidence=IEA]
[GO:0006915 "apoptotic process" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 EMBL:CH473964
GeneTree:ENSGT00670000098028 CTD:51202 KO:K14777 OMA:IFIPSKF
RefSeq:NP_001015005.2 UniGene:Rn.73790 Ensembl:ENSRNOT00000011096
GeneID:297685 KEGG:rno:297685 RGD:1310437 NextBio:642541
Uniprot:G3V727
Length = 455
Score = 289 (106.8 bits), Expect = 1.2e-34, Sum P(3) = 1.2e-34
Identities = 79/208 (37%), Positives = 116/208 (55%)
Query: 31 LGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFN 90
LG+ L A ++ G KPT IQ +IPL L+G+D++ A+TGSGKT A+ LP+L+ L
Sbjct: 29 LGVTDVLCEACDQLGWAKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLE 88
Query: 91 ESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAAL 150
+P+ A LVL PTREL Q+ + AL + ++ + + + AL
Sbjct: 89 --TPQRLFA---LVLTPTRELAFQISEQFEAL----GSSIGVQCAVIVGGIDSMSQSLAL 139
Query: 151 AGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLKALSAVI 209
A P IVIATPG + L +K F+ +LK LV+DEAD +L+ +E ++ + VI
Sbjct: 140 AKKPHIVIATPGRLIDHLEN----TKGFNLRALKYLVMDEADRILNMDFETEVDKILKVI 195
Query: 210 PRGCQCLLMSATSSSDVDKLKKLILHNP 237
PR + L SAT + V KL++ L NP
Sbjct: 196 PRDRKTFLFSATMTKKVQKLQRAALKNP 223
Score = 227 (85.0 bits), Expect = 1.3e-26, Sum P(3) = 1.3e-26
Identities = 73/241 (30%), Positives = 114/241 (47%)
Query: 102 ALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATP 161
ALVL PTREL Q+ + AL + ++ + + + ALA P IVIATP
Sbjct: 95 ALVLTPTRELAFQISEQFEAL----GSSIGVQCAVIVGGIDSMSQSLALAKKPHIVIATP 150
Query: 162 GCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSA 220
G + L +K F+ +LK LV+DEAD +L+ +E ++ + VIPR + L SA
Sbjct: 151 GRLIDHLEN----TKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKTFLFSA 206
Query: 221 TSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKXXXXXXXXXXX 280
T + V KL++ L NP + K + + K +QQ+++ + K
Sbjct: 207 TMTKKVQKLQRAALKNPVKCAVSS----KYQTVEK-LQQYYLFIPSKFKDTYLVYILNEL 261
Query: 281 XVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIAT 340
+IF +T + R L L G + L+ ++ Q+ RL L +F A L+AT
Sbjct: 262 A-GNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSILLAT 320
Query: 341 D 341
D
Sbjct: 321 D 321
Score = 137 (53.3 bits), Expect = 1.2e-34, Sum P(3) = 1.2e-34
Identities = 21/59 (35%), Positives = 42/59 (71%)
Query: 378 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVG 436
RG+D +V V+NF++P ++ Y+HR+GRT RA +G +++ V+ ++++F+ I+ +G
Sbjct: 325 RGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRIEHLIG 383
Score = 46 (21.3 bits), Expect = 1.2e-34, Sum P(3) = 1.2e-34
Identities = 19/74 (25%), Positives = 30/74 (40%)
Query: 519 PASHLRDVPDYLLDAKTQEACKMVKLARAAMGNKNSSRRQGPRRKFRKSDPLKSFSAEPT 578
P +D +L + EA + ++ G K +R+ P D +
Sbjct: 387 PVFPTQDEEVMMLTERVSEAQRFARMELREHGEKKKRKREDPG----DDDDTEGAIGVRN 442
Query: 579 KRAGKGRMK-REGR 591
K AG G+MK R+GR
Sbjct: 443 KVAG-GKMKKRKGR 455
>POMBASE|SPBC543.06c [details] [associations]
symbol:dbp8 "ATP-dependent RNA helicase Dbp8
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISO] [GO:0005524 "ATP binding" evidence=ISM]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=ISO;IDA] [GO:0006364 "rRNA processing" evidence=ISO]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 PomBase:SPBC543.06c GO:GO:0005524 GO:GO:0005730
EMBL:CU329671 GenomeReviews:CU329671_GR GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K14778 HOGENOM:HOG000268802 OMA:EVRTVEQ OrthoDB:EOG4PP1RW
RefSeq:NP_596794.1 ProteinModelPortal:Q9HGM5 STRING:Q9HGM5
EnsemblFungi:SPBC543.06c.1 GeneID:2541069 KEGG:spo:SPBC543.06c
NextBio:20802183 Uniprot:Q9HGM5
Length = 453
Score = 298 (110.0 bits), Expect = 1.8e-34, Sum P(2) = 1.8e-34
Identities = 97/315 (30%), Positives = 152/315 (48%)
Query: 31 LGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFN 90
LG+ L+ L I +PT IQ+ I ILEG++ + AKTGSGKT A+ LP++ +
Sbjct: 12 LGISPWLIDTLKALAIYEPTDIQEGVIAQILEGRNCIGGAKTGSGKTAAFALPIIEKWSK 71
Query: 91 ESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAAL 150
+ S AL+L PTREL Q+ + AL + LK + M L
Sbjct: 72 DPS-----GIFALILTPTRELAIQIDEQFAAL----GANLNLKHALIVGGMDMIRQSIDL 122
Query: 151 AGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIP 210
+ P +V+ATPG + + + ++ + +K LV+DEAD LLS + DDL +V+P
Sbjct: 123 SKRPHVVVATPGRLADLIRSNGEETIAGLRRIKFLVMDEADRLLSPTFADDLDDCFSVLP 182
Query: 211 RG--CQCLLMSATSSSDVDKLK-KLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSER 267
Q LL +AT + + +LK + +N L L EV + + +P +QQ +I S +
Sbjct: 183 ASEDRQTLLFTATVTDAIRQLKYQPQKNNKPPLWLYEV-ETDNISVPSTLQQSYIFVSSQ 241
Query: 268 DKXXXXXXXXXX-XXVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHIL 326
+ +K A+IF N A + L ++ L++E+ Q R++ L
Sbjct: 242 VREAYLVHLLTIPENAKKSAIIFVNRTRTAELIYSILRLLELRVTELHSEMVQRERINSL 301
Query: 327 EEFNAGLFDYLIATD 341
F A L+ATD
Sbjct: 302 GRFRAEAAKILVATD 316
Score = 136 (52.9 bits), Expect = 1.8e-34, Sum P(2) = 1.8e-34
Identities = 25/68 (36%), Positives = 44/68 (64%)
Query: 378 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGD 437
RG+D +V VINF++P++ Y+HR+GRT RA +G S+S+V+ ++ + I+ VG
Sbjct: 320 RGLDIPSVQLVINFDLPRDPDDYIHRVGRTARAGRSGESISIVTERDVDLVHAIEDRVGT 379
Query: 438 DENEDSNI 445
+E ++
Sbjct: 380 KLSEYEHV 387
>UNIPROTKB|Q81JK1 [details] [associations]
symbol:BAS5307 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:1392 "Bacillus anthracis" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 HOGENOM:HOG000268809
InterPro:IPR005580 Pfam:PF03880 OMA:ENRFLEE RefSeq:NP_847849.1
RefSeq:YP_022388.1 RefSeq:YP_031544.1 ProteinModelPortal:Q81JK1
SMR:Q81JK1 IntAct:Q81JK1 DNASU:1085452
EnsemblBacteria:EBBACT00000008202 EnsemblBacteria:EBBACT00000014623
EnsemblBacteria:EBBACT00000021322 GeneID:1085452 GeneID:2819774
GeneID:2852974 KEGG:ban:BA_5703 KEGG:bar:GBAA_5703 KEGG:bat:BAS5307
ProtClustDB:CLSK883265 BioCyc:BANT260799:GJAJ-5380-MONOMER
BioCyc:BANT261594:GJ7F-5556-MONOMER Uniprot:Q81JK1
Length = 481
Score = 279 (103.3 bits), Expect = 2.5e-34, Sum P(2) = 2.5e-34
Identities = 83/303 (27%), Positives = 142/303 (46%)
Query: 40 ALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLA 99
AL G + PT +Q IP+ L+ KD+V +++TGSGKT ++ +PL + E +
Sbjct: 18 ALTGLGYEHPTEVQGEVIPVALQKKDLVVKSQTGSGKTASFGIPLCEMVEWEENK----- 72
Query: 100 PAALVLVPTRELCQQVYSEVMALIELCKGQVQ-LKVVQLTSSMPASDLRAALAGPPDIVI 158
P ALVL PTREL QV ++ + G+ + +K + P + + L IV+
Sbjct: 73 PQALVLTPTRELAVQVKEDITNI-----GRFKRIKAAAIYGKSPFARQKLELKQKTHIVV 127
Query: 159 ATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLM 218
TPG + + G L + LK LV+DEAD +L+ G+ D ++A+ +P +L
Sbjct: 128 GTPGRVLDHIEKGTLSL----ERLKYLVIDEADEMLNMGFIDQVEAIIDELPTKRMTMLF 183
Query: 219 SATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKXXXXXXXXX 278
SAT DV++L + ++ P + + G D++ + E +K
Sbjct: 184 SATLPEDVERLSRTYMNAPTHIEIKAAGITTDKI-----EHTLFEVREEEKLSLLKDVTT 238
Query: 279 XXXVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLI 338
+IF T + + L++ ++ + Q R ++++F G F YL+
Sbjct: 239 IENPDS-CIIFCRTQENVDHVYRQLDRVNYPCDKIHGGMVQEDRFGVMDDFRKGKFRYLV 297
Query: 339 ATD 341
ATD
Sbjct: 298 ATD 300
Score = 161 (61.7 bits), Expect = 2.5e-34, Sum P(2) = 2.5e-34
Identities = 35/88 (39%), Positives = 51/88 (57%)
Query: 350 QSDEGGHVDS-RKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTG 408
Q D G +D RK K D RGID N+ VIN+++P YVHR GRTG
Sbjct: 278 QEDRFGVMDDFRKGKFRYLVATDV---AARGIDIDNITHVINYDIPLEKESYVHRTGRTG 334
Query: 409 RAYNTGASVSLVSPDEMKIFEEIKSFVG 436
RA N+G +++ ++P E + EEI++++G
Sbjct: 335 RAGNSGKAITFITPYEDRFLEEIEAYIG 362
>TIGR_CMR|BA_5703 [details] [associations]
symbol:BA_5703 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:198094 "Bacillus anthracis str. Ames" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 HOGENOM:HOG000268809
InterPro:IPR005580 Pfam:PF03880 OMA:ENRFLEE RefSeq:NP_847849.1
RefSeq:YP_022388.1 RefSeq:YP_031544.1 ProteinModelPortal:Q81JK1
SMR:Q81JK1 IntAct:Q81JK1 DNASU:1085452
EnsemblBacteria:EBBACT00000008202 EnsemblBacteria:EBBACT00000014623
EnsemblBacteria:EBBACT00000021322 GeneID:1085452 GeneID:2819774
GeneID:2852974 KEGG:ban:BA_5703 KEGG:bar:GBAA_5703 KEGG:bat:BAS5307
ProtClustDB:CLSK883265 BioCyc:BANT260799:GJAJ-5380-MONOMER
BioCyc:BANT261594:GJ7F-5556-MONOMER Uniprot:Q81JK1
Length = 481
Score = 279 (103.3 bits), Expect = 2.5e-34, Sum P(2) = 2.5e-34
Identities = 83/303 (27%), Positives = 142/303 (46%)
Query: 40 ALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLA 99
AL G + PT +Q IP+ L+ KD+V +++TGSGKT ++ +PL + E +
Sbjct: 18 ALTGLGYEHPTEVQGEVIPVALQKKDLVVKSQTGSGKTASFGIPLCEMVEWEENK----- 72
Query: 100 PAALVLVPTRELCQQVYSEVMALIELCKGQVQ-LKVVQLTSSMPASDLRAALAGPPDIVI 158
P ALVL PTREL QV ++ + G+ + +K + P + + L IV+
Sbjct: 73 PQALVLTPTRELAVQVKEDITNI-----GRFKRIKAAAIYGKSPFARQKLELKQKTHIVV 127
Query: 159 ATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLM 218
TPG + + G L + LK LV+DEAD +L+ G+ D ++A+ +P +L
Sbjct: 128 GTPGRVLDHIEKGTLSL----ERLKYLVIDEADEMLNMGFIDQVEAIIDELPTKRMTMLF 183
Query: 219 SATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKXXXXXXXXX 278
SAT DV++L + ++ P + + G D++ + E +K
Sbjct: 184 SATLPEDVERLSRTYMNAPTHIEIKAAGITTDKI-----EHTLFEVREEEKLSLLKDVTT 238
Query: 279 XXXVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLI 338
+IF T + + L++ ++ + Q R ++++F G F YL+
Sbjct: 239 IENPDS-CIIFCRTQENVDHVYRQLDRVNYPCDKIHGGMVQEDRFGVMDDFRKGKFRYLV 297
Query: 339 ATD 341
ATD
Sbjct: 298 ATD 300
Score = 161 (61.7 bits), Expect = 2.5e-34, Sum P(2) = 2.5e-34
Identities = 35/88 (39%), Positives = 51/88 (57%)
Query: 350 QSDEGGHVDS-RKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTG 408
Q D G +D RK K D RGID N+ VIN+++P YVHR GRTG
Sbjct: 278 QEDRFGVMDDFRKGKFRYLVATDV---AARGIDIDNITHVINYDIPLEKESYVHRTGRTG 334
Query: 409 RAYNTGASVSLVSPDEMKIFEEIKSFVG 436
RA N+G +++ ++P E + EEI++++G
Sbjct: 335 RAGNSGKAITFITPYEDRFLEEIEAYIG 362
>UNIPROTKB|Q5T1V6 [details] [associations]
symbol:DDX59 "Probable ATP-dependent RNA helicase DDX59"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0005622 "intracellular" evidence=IDA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0046872
GO:GO:0003723 GO:GO:0005622 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR007529 Pfam:PF04438 PROSITE:PS51083
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
EMBL:AL136611 EMBL:AL445483 EMBL:BC014183 EMBL:BC041801
IPI:IPI00010449 IPI:IPI00217157 RefSeq:NP_001026895.2
UniGene:Hs.497332 PDB:2YQP PDBsum:2YQP ProteinModelPortal:Q5T1V6
SMR:Q5T1V6 PhosphoSite:Q5T1V6 DMDM:74762230 PaxDb:Q5T1V6
PRIDE:Q5T1V6 DNASU:83479 Ensembl:ENST00000331314
Ensembl:ENST00000447706 GeneID:83479 KEGG:hsa:83479 UCSC:uc009wzk.3
CTD:83479 GeneCards:GC01M200594 HGNC:HGNC:25360 HPA:HPA047166
neXtProt:NX_Q5T1V6 PharmGKB:PA142672000 HOGENOM:HOG000006599
HOVERGEN:HBG106120 InParanoid:Q5T1V6 OMA:VTRPIID PhylomeDB:Q5T1V6
EvolutionaryTrace:Q5T1V6 GenomeRNAi:83479 NextBio:72419
ArrayExpress:Q5T1V6 Bgee:Q5T1V6 CleanEx:HS_DDX59
Genevestigator:Q5T1V6 Uniprot:Q5T1V6
Length = 619
Score = 320 (117.7 bits), Expect = 3.0e-34, Sum P(2) = 3.0e-34
Identities = 99/310 (31%), Positives = 156/310 (50%)
Query: 37 LVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKS 96
L H L K G + PT IQ IP+ L G+D++A A TGSGKT A+LLP++ R ES
Sbjct: 214 LNHNLKKSGYEVPTPIQMQMIPVGLLGRDILASADTGSGKTAAFLLPVIMRALFESK--- 270
Query: 97 KLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDI 156
P+AL+L PTREL Q+ + EL G ++K V L +P L +
Sbjct: 271 --TPSALILTPTRELAIQIERQAK---ELMSGLPRMKTVLLVGGLPLPPQLYRLQQHVKV 325
Query: 157 VIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCL 216
+IATPG + L + QS +KI+V+DEAD +L G++ + + IP CQ +
Sbjct: 326 IIATPG---RLLDI-IKQSSVELCGVKIVVVDEADTMLKMGFQQQVLDILENIPNDCQTI 381
Query: 217 LMSATSSSDVDKLKKLILHNPY-ILT----LPEVGDVKDEVIPKNVQQFWISCSERDKXX 271
L+SAT + +++L +LHNP I+T LP +V+ ++ W+ + K
Sbjct: 382 LVSATIPTSIEQLASQLLHNPVRIITGEKNLP-CANVRQIIL-------WVEDPAKKKKL 433
Query: 272 XXXXXXXXXXVQKKALIFTNTIDMAFRLKLFLEKF-GIKSAILNAELPQNSRLHILEEFN 330
+ L+F + A L ++K G+KS +++E Q R +IL+
Sbjct: 434 FEILNDKKLF-KPPVLVFVDCKLGADLLSEAVQKITGLKSISIHSEKSQIERKNILKGLL 492
Query: 331 AGLFDYLIAT 340
G ++ +++T
Sbjct: 493 EGDYEVVVST 502
Score = 121 (47.7 bits), Expect = 3.0e-34, Sum P(2) = 3.0e-34
Identities = 33/122 (27%), Positives = 61/122 (50%)
Query: 375 GVV-RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKS 433
GV+ RG+D +V V+NF+MP + YVH+IGR GR G +++ ++ + ++F +I
Sbjct: 503 GVLGRGLDLISVRLVVNFDMPSSMDEYVHQIGRVGRLGQNGTAITFINNNSKRLFWDIAK 562
Query: 434 FVGDDENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDL--RNEILNS 491
V + + I P LL + + + + K V + D+ +++ NS
Sbjct: 563 RV-----KPTGSILPPQLLNSPYLHDQKRKEQQKDKQTQNDLVTGANLMDIIRKHDKSNS 617
Query: 492 EK 493
+K
Sbjct: 618 QK 619
>WB|WBGene00000479 [details] [associations]
symbol:cgh-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0040007 "growth" evidence=IMP]
[GO:0002119 "nematode larval development" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0002009 "morphogenesis of an
epithelium" evidence=IMP] [GO:0008340 "determination of adult
lifespan" evidence=IMP] [GO:0040035 "hermaphrodite genitalia
development" evidence=IMP] [GO:0006915 "apoptotic process"
evidence=IMP] [GO:0051729 "germline cell cycle switching, mitotic
to meiotic cell cycle" evidence=IMP] [GO:0008219 "cell death"
evidence=IMP] [GO:0006898 "receptor-mediated endocytosis"
evidence=IMP] [GO:0010467 "gene expression" evidence=IMP]
[GO:0007052 "mitotic spindle organization" evidence=IMP]
[GO:0007276 "gamete generation" evidence=IMP] [GO:0043066 "negative
regulation of apoptotic process" evidence=IMP] [GO:0016071 "mRNA
metabolic process" evidence=TAS] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0043186 "P granule" evidence=IDA] [GO:0000932
"cytoplasmic mRNA processing body" evidence=IDA] [GO:0003724 "RNA
helicase activity" evidence=ISS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0017148 "negative regulation of translation"
evidence=IMP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0008340
GO:GO:0009792 GO:GO:0002009 GO:GO:0006898 GO:GO:0040007
GO:GO:0006915 GO:GO:0010467 GO:GO:0016071 GO:GO:0043066
GO:GO:0030154 GO:GO:0007052 GO:GO:0002119 GO:GO:0017148
GO:GO:0048477 GO:GO:0007283 GO:GO:0051729 GO:GO:0003723
GO:GO:0040035 GO:GO:0000932 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0007276 GO:GO:0008026 EMBL:FO080423
RefSeq:NP_498646.1 ProteinModelPortal:Q95YF3 SMR:Q95YF3
DIP:DIP-25457N IntAct:Q95YF3 MINT:MINT-250782 STRING:Q95YF3
PaxDb:Q95YF3 EnsemblMetazoa:C07H6.5.1 EnsemblMetazoa:C07H6.5.2
GeneID:176061 KEGG:cel:CELE_C07H6.5 UCSC:C07H6.5.1 CTD:176061
WormBase:C07H6.5 eggNOG:COG0513 GeneTree:ENSGT00530000063986
HOGENOM:HOG000268797 InParanoid:Q95YF3 KO:K12614 OMA:YSHARMK
NextBio:890944 GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195
Uniprot:Q95YF3
Length = 430
Score = 298 (110.0 bits), Expect = 3.6e-34, Sum P(2) = 3.6e-34
Identities = 84/214 (39%), Positives = 121/214 (56%)
Query: 31 LGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFN 90
LG DL + + +KG +KP+ IQ+ASI + L G+D++ARAK G+GKT AY +P++ ++
Sbjct: 50 LGRDLLM--GIFEKGWEKPSPIQEASIGVALTGQDILARAKNGTGKTGAYCIPVIEKI-- 105
Query: 91 ESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAAL 150
P K A A+V+VPTREL Q S++ +EL K +QLKV+ T D L
Sbjct: 106 --QPALK-AIQAMVIVPTRELALQT-SQIC--VELSK-HIQLKVMVTTGGTDLRDDIMRL 158
Query: 151 AGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIP 210
G +VIATPG + + GV + + K LVLDEAD LLS ++ L L +P
Sbjct: 159 NGTVHLVIATPGRILDLMEKGVAKM----EHCKTLVLDEADKLLSQDFQGILDRLINFLP 214
Query: 211 RGCQCLLMSATSSSDVDKLKKLILHNPYILTLPE 244
+ Q +L SAT + V + +H PY + L E
Sbjct: 215 KERQVMLYSATFPNTVTSFMQKHMHKPYEINLME 248
Score = 218 (81.8 bits), Expect = 6.3e-24, Sum P(2) = 6.3e-24
Identities = 71/240 (29%), Positives = 112/240 (46%)
Query: 102 ALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATP 161
A+V+VPTREL Q S++ +EL K +QLKV+ T D L G +VIATP
Sbjct: 114 AMVIVPTRELALQT-SQIC--VELSK-HIQLKVMVTTGGTDLRDDIMRLNGTVHLVIATP 169
Query: 162 GCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSAT 221
G + + GV + + K LVLDEAD LLS ++ L L +P+ Q +L SAT
Sbjct: 170 GRILDLMEKGVAKM----EHCKTLVLDEADKLLSQDFQGILDRLINFLPKERQVMLYSAT 225
Query: 222 SSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKXXXXXXXXXXXX 281
+ V + +H PY + L E E+ V Q++ E+ K
Sbjct: 226 FPNTVTSFMQKHMHKPYEINLME------ELTLLGVTQYYAFVQEKQKVHCLNTLFRKLQ 279
Query: 282 VQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATD 341
+ + ++IF N+ L + + G +++++ QN R + +F G L+ +D
Sbjct: 280 INQ-SIIFCNSTQRVELLAKKITEIGYSCYYIHSKMAQNHRNRVFHDFRQGNCRNLVCSD 338
Score = 128 (50.1 bits), Expect = 3.6e-34, Sum P(2) = 3.6e-34
Identities = 23/57 (40%), Positives = 39/57 (68%)
Query: 376 VVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIK 432
+ RGID + V+ VINF+ P+NA Y+HRIGR+GR + G +++L++ ++ I+
Sbjct: 340 LTRGIDIQAVNVVINFDFPRNAETYLHRIGRSGRFGHLGVAINLITYEDRHTLRRIE 396
Score = 37 (18.1 bits), Expect = 1.2e-24, Sum P(2) = 1.2e-24
Identities = 6/28 (21%), Positives = 16/28 (57%)
Query: 310 SAILNAELPQNSRLHILEEFNAGLFDYL 337
+ ++N + P+N+ ++ +G F +L
Sbjct: 350 NVVINFDFPRNAETYLHRIGRSGRFGHL 377
>UNIPROTKB|Q95YF3 [details] [associations]
symbol:cgh-1 "ATP-dependent RNA helicase cgh-1"
species:6239 "Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0008340
GO:GO:0009792 GO:GO:0002009 GO:GO:0006898 GO:GO:0040007
GO:GO:0006915 GO:GO:0010467 GO:GO:0016071 GO:GO:0043066
GO:GO:0030154 GO:GO:0007052 GO:GO:0002119 GO:GO:0017148
GO:GO:0048477 GO:GO:0007283 GO:GO:0051729 GO:GO:0003723
GO:GO:0040035 GO:GO:0000932 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0007276 GO:GO:0008026 EMBL:FO080423
RefSeq:NP_498646.1 ProteinModelPortal:Q95YF3 SMR:Q95YF3
DIP:DIP-25457N IntAct:Q95YF3 MINT:MINT-250782 STRING:Q95YF3
PaxDb:Q95YF3 EnsemblMetazoa:C07H6.5.1 EnsemblMetazoa:C07H6.5.2
GeneID:176061 KEGG:cel:CELE_C07H6.5 UCSC:C07H6.5.1 CTD:176061
WormBase:C07H6.5 eggNOG:COG0513 GeneTree:ENSGT00530000063986
HOGENOM:HOG000268797 InParanoid:Q95YF3 KO:K12614 OMA:YSHARMK
NextBio:890944 GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195
Uniprot:Q95YF3
Length = 430
Score = 298 (110.0 bits), Expect = 3.6e-34, Sum P(2) = 3.6e-34
Identities = 84/214 (39%), Positives = 121/214 (56%)
Query: 31 LGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFN 90
LG DL + + +KG +KP+ IQ+ASI + L G+D++ARAK G+GKT AY +P++ ++
Sbjct: 50 LGRDLLM--GIFEKGWEKPSPIQEASIGVALTGQDILARAKNGTGKTGAYCIPVIEKI-- 105
Query: 91 ESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAAL 150
P K A A+V+VPTREL Q S++ +EL K +QLKV+ T D L
Sbjct: 106 --QPALK-AIQAMVIVPTRELALQT-SQIC--VELSK-HIQLKVMVTTGGTDLRDDIMRL 158
Query: 151 AGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIP 210
G +VIATPG + + GV + + K LVLDEAD LLS ++ L L +P
Sbjct: 159 NGTVHLVIATPGRILDLMEKGVAKM----EHCKTLVLDEADKLLSQDFQGILDRLINFLP 214
Query: 211 RGCQCLLMSATSSSDVDKLKKLILHNPYILTLPE 244
+ Q +L SAT + V + +H PY + L E
Sbjct: 215 KERQVMLYSATFPNTVTSFMQKHMHKPYEINLME 248
Score = 218 (81.8 bits), Expect = 6.3e-24, Sum P(2) = 6.3e-24
Identities = 71/240 (29%), Positives = 112/240 (46%)
Query: 102 ALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATP 161
A+V+VPTREL Q S++ +EL K +QLKV+ T D L G +VIATP
Sbjct: 114 AMVIVPTRELALQT-SQIC--VELSK-HIQLKVMVTTGGTDLRDDIMRLNGTVHLVIATP 169
Query: 162 GCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSAT 221
G + + GV + + K LVLDEAD LLS ++ L L +P+ Q +L SAT
Sbjct: 170 GRILDLMEKGVAKM----EHCKTLVLDEADKLLSQDFQGILDRLINFLPKERQVMLYSAT 225
Query: 222 SSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKXXXXXXXXXXXX 281
+ V + +H PY + L E E+ V Q++ E+ K
Sbjct: 226 FPNTVTSFMQKHMHKPYEINLME------ELTLLGVTQYYAFVQEKQKVHCLNTLFRKLQ 279
Query: 282 VQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATD 341
+ + ++IF N+ L + + G +++++ QN R + +F G L+ +D
Sbjct: 280 INQ-SIIFCNSTQRVELLAKKITEIGYSCYYIHSKMAQNHRNRVFHDFRQGNCRNLVCSD 338
Score = 128 (50.1 bits), Expect = 3.6e-34, Sum P(2) = 3.6e-34
Identities = 23/57 (40%), Positives = 39/57 (68%)
Query: 376 VVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIK 432
+ RGID + V+ VINF+ P+NA Y+HRIGR+GR + G +++L++ ++ I+
Sbjct: 340 LTRGIDIQAVNVVINFDFPRNAETYLHRIGRSGRFGHLGVAINLITYEDRHTLRRIE 396
Score = 37 (18.1 bits), Expect = 1.2e-24, Sum P(2) = 1.2e-24
Identities = 6/28 (21%), Positives = 16/28 (57%)
Query: 310 SAILNAELPQNSRLHILEEFNAGLFDYL 337
+ ++N + P+N+ ++ +G F +L
Sbjct: 350 NVVINFDFPRNAETYLHRIGRSGRFGHL 377
>TIGR_CMR|CPS_0174 [details] [associations]
symbol:CPS_0174 "ATP-dependent RNA helicase RhlB"
species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0006402
"mRNA catabolic process" evidence=ISS] HAMAP:MF_00661
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR023554 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003723
GO:GO:0006401 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 KO:K03732 OMA:HIDGIKY ProtClustDB:PRK04837
RefSeq:YP_266942.1 ProteinModelPortal:Q48AH1 STRING:Q48AH1
GeneID:3521970 KEGG:cps:CPS_0174 PATRIC:21463765
BioCyc:CPSY167879:GI48-277-MONOMER Uniprot:Q48AH1
Length = 428
Score = 296 (109.3 bits), Expect = 3.7e-34, Sum P(2) = 3.7e-34
Identities = 94/314 (29%), Positives = 154/314 (49%)
Query: 31 LGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFN 90
L L ++V L G T IQ S+P++L+G D+ +A+TG GKT A+L H L
Sbjct: 14 LNLAPQVVTGLEAMGFDYCTSIQAKSLPVLLQGTDLAGQAQTGEGKTIAFLAATFHHLLQ 73
Query: 91 ESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQ-VQLKVVQLTSSMPASDLRAA 149
+ +P P AL++ PTREL Q++ + E+ K ++L VV + R
Sbjct: 74 KEAPTHN-QPRALIMAPTRELAIQIHRDAT---EMAKSTGLRLGVVYGGEGYESQ--RLE 127
Query: 150 LAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVI 209
L DI+I T G + + G+ K+ ++++VLDEAD + G+ D++ + +
Sbjct: 128 LEAGVDILIGTCGRLIDYMKQGIYNLKN----IEVIVLDEADRMFDLGFIKDIRYMFDKM 183
Query: 210 PRGCQCL--LMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSER 267
P + L L SAT S V +L +++P T EV + + + + ++ + +E
Sbjct: 184 PPATERLSMLFSATLSFRVKELAFDHMNDP---TSVEV-EPEQKTNSRISEELFYPSNE- 238
Query: 268 DKXXXXXXXXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILE 327
DK +K A++F NT + ++ L I+ +L ++PQ RL ILE
Sbjct: 239 DKMTLLQTLIEEDWPEK-AIVFANTKHVCEKVFDHLNADKIRVGLLTGDVPQKKRLKILE 297
Query: 328 EFNAGLFDYLIATD 341
EF G D L+ATD
Sbjct: 298 EFTDGTVDILVATD 311
Score = 130 (50.8 bits), Expect = 3.7e-34, Sum P(2) = 3.7e-34
Identities = 25/61 (40%), Positives = 38/61 (62%)
Query: 378 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGD 437
RG+ +V V N+++P + YVHRIGRTGRA TG ++SL + EI++++G
Sbjct: 315 RGLHIPSVTHVFNYDLPDDCQDYVHRIGRTGRAGETGHAISLACEQYVFNLPEIETYIGH 374
Query: 438 D 438
D
Sbjct: 375 D 375
>CGD|CAL0004058 [details] [associations]
symbol:DBP8 species:5476 "Candida albicans" [GO:0030686 "90S
preribosome" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0000472 "endonucleolytic cleavage to generate mature 5'-end of
SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA]
[GO:0000447 "endonucleolytic cleavage in ITS1 to separate SSU-rRNA
from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript
(SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA] [GO:0000480
"endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript
(SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 CGD:CAL0004058 GO:GO:0005524 GO:GO:0005730
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 EMBL:AACQ01000165 EMBL:AACQ01000186
RefSeq:XP_711718.1 RefSeq:XP_712192.1 ProteinModelPortal:Q59PR3
STRING:Q59PR3 GeneID:3646191 GeneID:3646692 KEGG:cal:CaO19.13973
KEGG:cal:CaO19.6652 KO:K14778 Uniprot:Q59PR3
Length = 440
Score = 307 (113.1 bits), Expect = 3.8e-34, Sum P(2) = 3.8e-34
Identities = 105/316 (33%), Positives = 146/316 (46%)
Query: 31 LGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFN 90
LG+ L +L+ I PT IQ A IP IL+G D + AKTGSGKT A+ P+L + ++
Sbjct: 6 LGVAKWLSESLDAMKIYTPTAIQSACIPAILKGHDCIGGAKTGSGKTIAFAAPMLTQ-WS 64
Query: 91 ESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAAL 150
E P L+L PTREL Q+ + AL + +KV + AL
Sbjct: 65 ED-P---FGIFGLILTPTRELALQIAEQFAAL----GANMNIKVAVVVGGEDFVQQTLAL 116
Query: 151 AGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIP 210
P VIATPG + + ++ S +K LVLDEAD LLS + DL+ V+P
Sbjct: 117 QRKPHFVIATPGRLADHILNSGEETISGLRRVKYLVLDEADRLLSNSFGSDLQRCFDVLP 176
Query: 211 RGC--QCLLMSATSSSDVDKLKKL--ILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSE 266
Q LL +AT + V LK+ P + + EV V IP +Q ++
Sbjct: 177 TSDKRQTLLFTATITDAVRALKEKPPTPGKPPVF-MHEVETVDKVAIPSTLQISYVFVPS 235
Query: 267 RDKXXXXXXXXXXXXVQKK-ALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHI 325
K + A+IF N A L+ L K + A L++E+PQ+ R +
Sbjct: 236 YVKEAYLNSILHLEQFKDSTAVIFVNRTTTAEVLRRMLRKLDFRVASLHSEMPQSERTNS 295
Query: 326 LEEFNAGLFDYLIATD 341
L F AG LIATD
Sbjct: 296 LHRFKAGAARILIATD 311
Score = 117 (46.2 bits), Expect = 3.8e-34, Sum P(2) = 3.8e-34
Identities = 25/75 (33%), Positives = 43/75 (57%)
Query: 378 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVG- 436
RG+D V VINF++P + ++HR+GRT RA G +VS++ ++ + I+ +
Sbjct: 315 RGLDIPTVELVINFDIPADPDDFIHRVGRTARAGRKGDAVSIIGEKDIDRIQSIEERINK 374
Query: 437 -----DDENEDSNII 446
+D N+D N+I
Sbjct: 375 KMELLEDVNDD-NVI 388
>UNIPROTKB|P54475 [details] [associations]
symbol:cshB "DEAD-box ATP-dependent RNA helicase CshB"
species:224308 "Bacillus subtilis subsp. subtilis str. 168"
[GO:0003723 "RNA binding" evidence=ISS] [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=ISS] [GO:0005524 "ATP binding"
evidence=ISS] [GO:0009409 "response to cold" evidence=IGI]
[GO:0043590 "bacterial nucleoid" evidence=IDA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
GO:GO:0009409 GO:GO:0003723 EMBL:AL009126 GenomeReviews:AL009126_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043590
EMBL:D84432 PIR:D69954 RefSeq:NP_390393.1 ProteinModelPortal:P54475
SMR:P54475 IntAct:P54475 EnsemblBacteria:EBBACT00000001897
GeneID:937908 KEGG:bsu:BSU25140 PATRIC:18976864 GenoList:BSU25140
HOGENOM:HOG000268806 OMA:YAHVEPK ProtClustDB:CLSK2301471
BioCyc:BSUB:BSU25140-MONOMER Uniprot:P54475
Length = 438
Score = 297 (109.6 bits), Expect = 4.9e-34, Sum P(3) = 4.9e-34
Identities = 89/308 (28%), Positives = 152/308 (49%)
Query: 37 LVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKS 96
++ A+++ G +PT IQ+ IP +L+ + V+ +++TG+GKT AYLLPLL+++ P +
Sbjct: 15 IIDAVHRLGFYEPTDIQKRLIPAVLKKESVIGQSQTGTGKTHAYLLPLLNKI----DP-A 69
Query: 97 KLAPAALVLVPTRELCQQVYSEVMALIELCKG-QVQLKV-VQLTSSMPASDLRAALAGPP 154
K ++ PTREL Q+Y E + + + +G Q++ K + T + D L P
Sbjct: 70 KDVVQVVITAPTRELANQIYQEALKITQGEEGSQIRSKCFIGGTDKQKSID---KLKIQP 126
Query: 155 DIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQ 214
+V+ TPG + + L S ++SL V+DEADL+L G+ D+ + + +P Q
Sbjct: 127 HLVVGTPGRIADLIKEQAL-SVHKAESL---VIDEADLMLDMGFLADVDYIGSRMPEDLQ 182
Query: 215 CLLMSATSSSDVDKLKKLILHNP-YILTLPEVGDVKDEVIPKNVQQFWISCSERDKXXXX 273
L+ SAT + K + NP Y P+ +V ++ I RDK
Sbjct: 183 MLVFSATIPEKLKPFLKKYMENPKYAHVEPK------QVTAAKIEHILIPSKHRDKDKLL 236
Query: 274 XXXXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGL 333
++F NT + A + +L G+K +L+ L R ++++ N
Sbjct: 237 FDIMSHLNPYL-GIVFANTKNTADHIAQYLTGKGMKIGLLHGGLTPRERKKVMKQINDLE 295
Query: 334 FDYLIATD 341
F Y+IATD
Sbjct: 296 FTYIIATD 303
Score = 119 (46.9 bits), Expect = 4.9e-34, Sum P(3) = 4.9e-34
Identities = 29/72 (40%), Positives = 42/72 (58%)
Query: 355 GHVDSRKSKKHPKAKLDSEFGVV-------RGIDFKNVHTVINFEMPQNAAGYVHRIGRT 407
G + R+ KK K D EF + RGID K V VIN+E+P + YVHR+GRT
Sbjct: 277 GGLTPRERKKVMKQINDLEFTYIIATDLAARGIDIKGVSHVINYELPDDLDFYVHRVGRT 336
Query: 408 GRAYNTGASVSL 419
RA ++G ++++
Sbjct: 337 ARAGSSGQAMTI 348
Score = 42 (19.8 bits), Expect = 4.9e-34, Sum P(3) = 4.9e-34
Identities = 8/17 (47%), Positives = 11/17 (64%)
Query: 587 KREGRNGDDTGKHKKKK 603
K E + GDD + KK+K
Sbjct: 374 KGEWKKGDDRQRRKKRK 390
>WB|WBGene00002083 [details] [associations]
symbol:inf-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0040011
"locomotion" evidence=IMP] [GO:0008340 "determination of adult
lifespan" evidence=IMP] [GO:0019915 "lipid storage" evidence=IMP]
[GO:0040010 "positive regulation of growth rate" evidence=IMP]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0008340 GO:GO:0009792
GO:GO:0040007 GO:GO:0040010 GO:GO:0002119 GO:GO:0040011
GO:GO:0000003 GO:GO:0019915 GO:GO:0003743 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:FO081266 GO:GO:0008026
eggNOG:COG0513 HOGENOM:HOG000268797 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00530000062880 KO:K03257 OMA:TENDARQ
EMBL:Z12116 PIR:S26281 RefSeq:NP_001022623.1 RefSeq:NP_001022624.1
UniGene:Cel.6803 ProteinModelPortal:P27639 SMR:P27639
DIP:DIP-27102N IntAct:P27639 MINT:MINT-1112147 STRING:P27639
PaxDb:P27639 PRIDE:P27639 EnsemblMetazoa:F57B9.6a.1
EnsemblMetazoa:F57B9.6a.2 GeneID:175966 KEGG:cel:CELE_F57B9.6
UCSC:F57B9.6a.1 CTD:175966 WormBase:F57B9.6a WormBase:F57B9.6b
InParanoid:P27639 NextBio:890522 Uniprot:P27639
Length = 402
Score = 286 (105.7 bits), Expect = 5.5e-34, Sum P(2) = 5.5e-34
Identities = 93/300 (31%), Positives = 155/300 (51%)
Query: 45 GIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALV 104
G +KP+ IQ+ +I GKDV+A+A++G+GKT + + +L R+ +E P + ALV
Sbjct: 48 GFEKPSAIQKRAIVPCTTGKDVIAQAQSGTGKTATFSVSILQRIDHED-PHVQ----ALV 102
Query: 105 LVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCM 164
+ PTREL QQ+ + AL E + L + TS D R AG +V+ TPG +
Sbjct: 103 MAPTRELAQQIQKVMSALGEYLNVNI-LPCIGGTSVR--DDQRKLEAGI-HVVVGTPGRV 158
Query: 165 PKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSS 224
++ L + +K+ VLDEAD +LS G++D + + +P+ Q +L+SAT S
Sbjct: 159 GDMINRNALDTSR----IKMFVLDEADEMLSRGFKDQIYEVFRSMPQDVQVVLLSATMPS 214
Query: 225 DVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKXXXXXXXXXXXXVQ- 283
+V + + NP + + KDE+ + ++QF+I+ ++D+ V
Sbjct: 215 EVLDVTNRFMRNPIRILVK-----KDELTLEGIRQFYINV-QKDEWKFDCLCDLYNVVNV 268
Query: 284 KKALIFTNTIDMAFRL--KLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATD 341
+A+IF NT L K+ +F + + L+ ++ Q R I+ EF +G LI TD
Sbjct: 269 TQAVIFCNTRRKVDTLTEKMTENQFTV--SCLHGDMDQAERDTIMREFRSGSSRVLITTD 326
Score = 134 (52.2 bits), Expect = 5.5e-34, Sum P(2) = 5.5e-34
Identities = 23/59 (38%), Positives = 40/59 (67%)
Query: 376 VVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSF 434
+ RGID + V VIN+++P N Y+HRIGR+GR G +++ V+ ++ + +EI+S+
Sbjct: 328 LARGIDVQQVSLVINYDLPSNRENYIHRIGRSGRFGRKGVAINFVTENDARQLKEIESY 386
>POMBASE|SPAC823.08c [details] [associations]
symbol:SPAC823.08c "ATP-dependent RNA helicase Rrp3
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISS] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=ISS] [GO:0005829 "cytosol" evidence=IDA] [GO:0006364 "rRNA
processing" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 PomBase:SPAC823.08c GO:GO:0005829
GO:GO:0005524 EMBL:CU329670 GO:GO:0005730 GenomeReviews:CU329670_GR
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268802 KO:K14777 OMA:IFIPSKF
OrthoDB:EOG4ZPJ3P RefSeq:NP_593835.1 ProteinModelPortal:Q9P6N8
SMR:Q9P6N8 STRING:Q9P6N8 EnsemblFungi:SPAC823.08c.1 GeneID:2543571
KEGG:spo:SPAC823.08c NextBio:20804578 Uniprot:Q9P6N8
Length = 465
Score = 298 (110.0 bits), Expect = 5.8e-34, Sum P(2) = 5.8e-34
Identities = 78/226 (34%), Positives = 120/226 (53%)
Query: 31 LGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFN 90
LG+ L A K G + PT IQQ +IP++L +DV+ A+TGSGKT A+ LP++ L+N
Sbjct: 51 LGVIDELCEACEKLGFKTPTPIQQEAIPVVLNKRDVIGLAQTGSGKTAAFALPVIQELWN 110
Query: 91 ESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAAL 150
SP A+VL PTREL Q+ + A+ G + ++ V + M AL
Sbjct: 111 NPSPFF-----AVVLAPTRELAYQISEQFEAI----GGSIGVRSVVIVGGMDMVTQAVAL 161
Query: 151 AGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLKALSAVI 209
+ P +++ TPG + L +K FS +LK L++DEAD LL + + + +I
Sbjct: 162 SKKPHVLVCTPGRLMDHLEN----TKGFSLKNLKYLIMDEADRLLDMDFGPIIDKILKII 217
Query: 210 PRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPK 255
P + LL SAT +S V+KL++ LH P + + D +I +
Sbjct: 218 PHERRTLLFSATMTSKVEKLQRASLHQPVRVAVSSKFSTVDTLIQR 263
Score = 228 (85.3 bits), Expect = 2.0e-25, Sum P(2) = 2.0e-25
Identities = 68/241 (28%), Positives = 113/241 (46%)
Query: 102 ALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATP 161
A+VL PTREL Q+ + A+ G + ++ V + M AL+ P +++ TP
Sbjct: 117 AVVLAPTRELAYQISEQFEAI----GGSIGVRSVVIVGGMDMVTQAVALSKKPHVLVCTP 172
Query: 162 GCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSA 220
G + L +K FS +LK L++DEAD LL + + + +IP + LL SA
Sbjct: 173 GRLMDHLEN----TKGFSLKNLKYLIMDEADRLLDMDFGPIIDKILKIIPHERRTLLFSA 228
Query: 221 TSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKXXXXXXXXXXX 280
T +S V+KL++ LH P + + D +I + + + +D
Sbjct: 229 TMTSKVEKLQRASLHQPVRVAVSSKFSTVDTLIQRYL---FFPFKHKDTYLVYLVNELAG 285
Query: 281 XVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIAT 340
+IF T++ RL + L G + L+ +L Q++RL L +F +G L+AT
Sbjct: 286 ---NSIIIFARTVNDTQRLAILLRTLGFSAIPLHGQLSQSNRLGALNKFKSGARSTLVAT 342
Query: 341 D 341
D
Sbjct: 343 D 343
Score = 133 (51.9 bits), Expect = 5.8e-34, Sum P(2) = 5.8e-34
Identities = 30/92 (32%), Positives = 53/92 (57%)
Query: 350 QSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGR 409
QS+ G ++ K K ++ L + RG+D V VIN+++P ++ Y+HR+GRT R
Sbjct: 321 QSNRLGALN--KFKSGARSTLVATDVAARGLDIPLVDVVINYDIPTDSKAYIHRVGRTAR 378
Query: 410 AYNTGASVSLVSPDEMKIFEEIKSFVGDDENE 441
A G S++LV+ +++ F I++ +G E
Sbjct: 379 AGRAGKSIALVTQYDLEPFLRIEATIGKKMQE 410
>UNIPROTKB|I3LQ10 [details] [associations]
symbol:LOC100626268 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00550000074997 Ensembl:ENSSSCT00000028964 OMA:RYLVALC
Uniprot:I3LQ10
Length = 684
Score = 315 (115.9 bits), Expect = 6.5e-34, Sum P(2) = 6.5e-34
Identities = 107/320 (33%), Positives = 153/320 (47%)
Query: 31 LGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFN 90
+ L L+ A+ G ++PT IQ+A IP+ L GKD+ A A TG+GKT A+ LP+L RL
Sbjct: 216 MNLSRPLLKAITVMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVLERLIY 275
Query: 91 ESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDL---- 146
+ P+ LVLVPTREL QV+S L Q L V+ S + A L
Sbjct: 276 K--PRQAPVTRVLVLVPTRELGIQVHSVTKQL-----AQSSLCVITTISGLFAGGLDVKS 328
Query: 147 -RAAL-AGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLK 203
AAL A PDI+IATPG + L SF S+++L+LDEAD +L +E+ +K
Sbjct: 329 QEAALRAAXPDILIATPGRLIDHLHN----CPSFHLSSIEVLILDEADRMLDEYFEEQMK 384
Query: 204 ALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFW-I 262
+ + Q +L SAT + +V L + L NP + + + +V P Q+F I
Sbjct: 385 EIIRMCSLHRQTMLFSATMTDEVKDLASVSLKNPVRIFV----NSNTDVAPFLRQEFIRI 440
Query: 263 SCSERDKXXXXXXXXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSR 322
+ ++FT T A R+ + L G++ L+ L Q R
Sbjct: 441 RPNREGDREAIVAALLMRTFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQR 500
Query: 323 -LHILEEFNAGLFDYLIATD 341
L L F D L+ATD
Sbjct: 501 XLEALWRFKDEQIDILVATD 520
Score = 126 (49.4 bits), Expect = 6.5e-34, Sum P(2) = 6.5e-34
Identities = 25/43 (58%), Positives = 29/43 (67%)
Query: 378 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLV 420
RG+D + V TVINF MP YVHR+GRT RA G SVSL+
Sbjct: 524 RGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLL 566
Score = 41 (19.5 bits), Expect = 0.00063, Sum P(2) = 0.00063
Identities = 11/36 (30%), Positives = 19/36 (52%)
Query: 342 DTQTKEKDQSDEGGHVDSRKSK---KHPKAKLDSEF 374
+ +T +D+ +EG V RK K K+ A + +F
Sbjct: 45 EPETDSEDEEEEGPIVLGRKQKALQKNRSADFNPDF 80
>DICTYBASE|DDB_G0288501 [details] [associations]
symbol:ddx42 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
dictyBase:DDB_G0288501 GO:GO:0005524 GO:GO:0005634
GenomeReviews:CM000154_GR GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:AAFI02000112 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 HSSP:P09052
KO:K12835 RefSeq:XP_636700.1 ProteinModelPortal:Q54IV3
STRING:Q54IV3 EnsemblProtists:DDB0233432 GeneID:8626657
KEGG:ddi:DDB_G0288501 OMA:DRDKRGG Uniprot:Q54IV3
Length = 986
Score = 330 (121.2 bits), Expect = 7.5e-34, Sum P(2) = 7.5e-34
Identities = 91/310 (29%), Positives = 155/310 (50%)
Query: 32 GLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNE 91
G D L+ A+ K+ I+ PT IQ+ +IP+ L G+D++A AKTGSGKT ++ P + + ++
Sbjct: 311 GFDDILLQAIAKQSIETPTPIQKQAIPIALSGRDLIAIAKTGSGKTATFIWPSISHIMDQ 370
Query: 92 SSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAALA 151
+ P AL L PTREL Q+Y E + + K + + ++ +L+A
Sbjct: 371 PYLEKGDGPIALFLAPTRELAHQIYLETLKYSKYFKLKTTVLYGGVSKQQQCKELKAGC- 429
Query: 152 GPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPR 211
+I++ATPG + + L++ + + LVLDEAD + +G+ + ++ +
Sbjct: 430 ---EIIVATPGRLIDMIK---LKATKLN-RVSYLVLDEADKMFDFGFGPQVLSIVNHVRP 482
Query: 212 GCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKXX 271
Q LL SAT +V++ + IL +P +++ +G + I + VQ + S+ DK
Sbjct: 483 DRQTLLFSATFKPNVEEFARTILSDPIKISIGMIGSANSD-ITQIVQ---VLKSDSDKWN 538
Query: 272 XXXXXXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNA 331
Q LIF +T +L L KFG ++ L+ + Q R ++ F
Sbjct: 539 WLTNQLALLLSQGSVLIFVSTKVAVEQLSSNLTKFGFQTCTLHGDKNQIERSQTIQTFKE 598
Query: 332 GLFDYLIATD 341
G + LIATD
Sbjct: 599 GKINILIATD 608
Score = 115 (45.5 bits), Expect = 7.5e-34, Sum P(2) = 7.5e-34
Identities = 19/48 (39%), Positives = 33/48 (68%)
Query: 378 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEM 425
RG+D + V+N++ ++ + HRIGRTGRA NTG + +L++P ++
Sbjct: 612 RGLDIPLIKNVVNYDTSRDIESHTHRIGRTGRAGNTGVAYTLITPKDI 659
>WB|WBGene00010260 [details] [associations]
symbol:F58E10.3 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0040010 "positive regulation of
growth rate" evidence=IMP] [GO:0040007 "growth" evidence=IMP]
[GO:0002119 "nematode larval development" evidence=IMP]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0009792 GO:GO:0040007
GO:GO:0040010 GO:GO:0002119 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268804 KO:K12823
GeneTree:ENSGT00660000095174 HSSP:P10081 EMBL:Z81555 PIR:T22917
RefSeq:NP_001041134.1 ProteinModelPortal:Q9XUW5 SMR:Q9XUW5
STRING:Q9XUW5 PaxDb:Q9XUW5 PRIDE:Q9XUW5 EnsemblMetazoa:F58E10.3a.1
EnsemblMetazoa:F58E10.3a.2 EnsemblMetazoa:F58E10.3a.3
EnsemblMetazoa:F58E10.3a.4 EnsemblMetazoa:F58E10.3a.5 GeneID:179897
KEGG:cel:CELE_F58E10.3 UCSC:F58E10.3a.1 CTD:179897
WormBase:F58E10.3a InParanoid:Q9XUW5 OMA:YVLQEIT NextBio:907314
ArrayExpress:Q9XUW5 Uniprot:Q9XUW5
Length = 561
Score = 318 (117.0 bits), Expect = 8.3e-34, Sum P(2) = 8.3e-34
Identities = 101/306 (33%), Positives = 142/306 (46%)
Query: 38 VHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSK 97
+H L QKPT+IQ S P+ + G+D+++ AKTGSGKT A++LP L + ++ +
Sbjct: 141 IHELLYGKFQKPTVIQSISWPIAMSGRDIISIAKTGSGKTLAFMLPALVHITKQAHRQRG 200
Query: 98 LAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIV 157
PA LVL+PTREL QQV EV I+ C + LK+ L L DIV
Sbjct: 201 EGPAVLVLLPTRELAQQV-QEVS--IDFCHS-LGLKMTCLFGGASKGPQARDLERGVDIV 256
Query: 158 IATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLL 217
+ATPG + L G K S LVLDEAD +L G+E +K + I Q L+
Sbjct: 257 VATPGRLLDFLDNGTTNMKKCS----YLVLDEADRMLDMGFEPQIKKIIGQIRPDRQTLM 312
Query: 218 MSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKXXXXXXXX 277
SAT +V L + L VG + + N+ Q E K
Sbjct: 313 FSATWPKEVRALASDFQKDAAFLN---VGSL-ELAANHNITQVVDILEEHAKQAKLMELL 368
Query: 278 XXXXVQK--KALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFD 335
QK K +IF T A L + + G + ++ + Q R +L+EF AG
Sbjct: 369 NHIMNQKECKTIIFVETKRKADELTRAMRRDGWPTLCIHGDKNQGERDWVLQEFKAGKTP 428
Query: 336 YLIATD 341
++ATD
Sbjct: 429 IMLATD 434
Score = 116 (45.9 bits), Expect = 8.3e-34, Sum P(2) = 8.3e-34
Identities = 30/96 (31%), Positives = 50/96 (52%)
Query: 347 EKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGR 406
+K+Q + + K+ K P L ++ RG+D ++ VIN++ P N+ YVHRIGR
Sbjct: 409 DKNQGERDWVLQEFKAGKTP-IMLATDVAA-RGLDVDDIKFVINYDYPNNSEDYVHRIGR 466
Query: 407 TGRAYNTGASVSLVS-------PDEMKIFEEIKSFV 435
TGR+ G + + + D +K+ +E K V
Sbjct: 467 TGRSDKKGTAYTFFTHTNASKAKDLLKVLDEAKQTV 502
Score = 38 (18.4 bits), Expect = 1.2e-25, Sum P(2) = 1.2e-25
Identities = 12/40 (30%), Positives = 18/40 (45%)
Query: 520 ASHLRDVPDYLLDAKTQEACKMVKLARAAMGNKNSSRRQG 559
AS +D+ L +AK + +A + G NS R G
Sbjct: 485 ASKAKDLLKVLDEAKQTVPQALRDMANRSYGGSNSRGRYG 524
>UNIPROTKB|F1NYX0 [details] [associations]
symbol:DDX49 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00670000098028 OMA:CQLLSMT EMBL:AADN02071779
EMBL:AADN02071780 IPI:IPI00822654 Ensembl:ENSGALT00000035055
ArrayExpress:F1NYX0 Uniprot:F1NYX0
Length = 482
Score = 321 (118.1 bits), Expect = 8.9e-34, Sum P(2) = 8.9e-34
Identities = 111/319 (34%), Positives = 155/319 (48%)
Query: 31 LGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFN 90
LGL LV + G+ +PT +Q + IP IL+G+D + AKTGSGKT A++LP+L L
Sbjct: 10 LGLAPWLVEQARQMGLSRPTPVQASCIPPILQGRDCLGCAKTGSGKTAAFVLPVLQVLSE 69
Query: 91 ESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAAL 150
+ P LVL PTREL Q+ +E ++ G VV M A L L
Sbjct: 70 D--PYGIFC---LVLTPTRELAYQI-AEQFRVLGKPLGLKDCVVVG-GLDMVAQALE--L 120
Query: 151 AGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYED---DLKALS 206
+ P +VIATPG + L + S +FS LK LVLDEAD LL G D DL+ +
Sbjct: 121 SRKPHVVIATPGRLADHLRS----SNTFSLKKLKFLVLDEADRLLEQGCADFTADLEVIL 176
Query: 207 AVIPRGCQCLLMSATSSSDVDKLKKLILHNPYIL-TLPEVGDVKDEVIPKNVQQFWISCS 265
+P Q LL SAT + +++LK L ++ P+ EV V DE+ Q ++
Sbjct: 177 EAVPARRQTLLFSATLTDTLNELKSLAMNRPFFWEAASEVRTV-DEL-----DQRYLLVP 230
Query: 266 ERDKXXXXXXXXXXXXVQKK---ALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSR 322
E K + + +IFT T L + L KF S L++ + Q R
Sbjct: 231 EAVKDAYLVHLIQTFQDEHEDWSIIIFTKTCKECQILNMMLRKFSFPSVALHSMMKQRQR 290
Query: 323 LHILEEFNAGLFDYLIATD 341
L +F + +F LIATD
Sbjct: 291 FAALAKFKSSIFKILIATD 309
Score = 104 (41.7 bits), Expect = 8.9e-34, Sum P(2) = 8.9e-34
Identities = 33/119 (27%), Positives = 54/119 (45%)
Query: 378 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIF----EEIKS 433
RG+D V VIN P Y+HR+GRT RA G S+++V+ ++ + EEIK
Sbjct: 313 RGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRNGISITMVTQYDIHLVHAIEEEIKL 372
Query: 434 FVGDDENEDS---NIIAPFPLLAQNAVESLRYRAEDVAKSVTKIA--VRESRAQDLRNE 487
+ + E+ +I+ + + L Y D K + K + E + DL +
Sbjct: 373 KLQEFSVEEKLVLDILTHVNVTRRECEIELEYMDFDEKKEINKRKQMILEGKDPDLEEK 431
>POMBASE|SPAC22F3.08c [details] [associations]
symbol:rok1 "ATP-dependent RNA helicase Rok1
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISO] [GO:0005524 "ATP binding" evidence=IC]
[GO:0005730 "nucleolus" evidence=ISO] [GO:0005829 "cytosol"
evidence=IDA] [GO:0006364 "rRNA processing" evidence=ISO]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 PomBase:SPAC22F3.08c GO:GO:0005829 GO:GO:0005524
EMBL:CU329670 GO:GO:0005730 GenomeReviews:CU329670_GR GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0004004 eggNOG:COG0513 HOGENOM:HOG000242486 KO:K14779
PIR:T38183 RefSeq:NP_593033.1 ProteinModelPortal:Q09775
STRING:Q09775 EnsemblFungi:SPAC22F3.08c.1 GeneID:2541786
KEGG:spo:SPAC22F3.08c OMA:ERESINT OrthoDB:EOG425926
NextBio:20802875 Uniprot:Q09775
Length = 481
Score = 277 (102.6 bits), Expect = 9.0e-34, Sum P(2) = 9.0e-34
Identities = 98/307 (31%), Positives = 147/307 (47%)
Query: 37 LVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKS 96
L L K+ I + T IQ+ +IP I +D++A A TGSGKT AYL P+L +L P
Sbjct: 57 LCENLKKQNITECTTIQRYAIPTIGSKRDLLACAPTGSGKTIAYLFPILQKL-QLHVPGG 115
Query: 97 KLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAA-LAGPPD 155
A+++ PTRELC+Q+Y + +L G LK+++L+ S +A L D
Sbjct: 116 Y---RAIIVAPTRELCEQIYRQAE---KLSFG-TSLKIIELSKSNEKIQEKAPKLREKYD 168
Query: 156 IVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGY-EDDLKALSAVIPRGCQ 214
+ I TP + + + TG+ SF + ++ V+DEAD L G+ E LSA
Sbjct: 169 MCIGTPMRLVQAIQTGL----SF-EKVEFFVMDEADRLFEPGFIEQTDHILSACTSSNIC 223
Query: 215 CLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKXXXXX 274
L SAT S V++L K++ +P + VG +KD Q+ S+ K
Sbjct: 224 KSLFSATIPSRVEELAKVVTVDPIRII---VG-LKDAATDSIDQRLLFVGSDTSKIVILR 279
Query: 275 XXXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLF 334
++ + +IF I+ A L L I +++ ELPQ R L +F G
Sbjct: 280 QMISNGELKPRVVIFVQDIERAKALYTELLFDEIHVGVIHGELPQAKREEALAKFRKGEI 339
Query: 335 DYLIATD 341
LIATD
Sbjct: 340 WVLIATD 346
Score = 158 (60.7 bits), Expect = 9.0e-34, Sum P(2) = 9.0e-34
Identities = 37/121 (30%), Positives = 63/121 (52%)
Query: 376 VVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 435
+ RGIDF V VINF+ PQ+ Y+HRIGRTGRA NTG +V+ + ++ + + I +
Sbjct: 348 LARGIDFHGVKMVINFDFPQSVHSYIHRIGRTGRAGNTGQAVTFFTKEDGEYIKLIAGVM 407
Query: 436 GDDENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLK 495
E N + P ++ + L+ ++ K +T A + + + + E + K +
Sbjct: 408 RSSGCEVPNWVMALPKPSKEMKKKLK-KSPPKRKRITTRASYDRQKEQRKKEYIKKVKKE 466
Query: 496 A 496
A
Sbjct: 467 A 467
>FB|FBgn0001942 [details] [associations]
symbol:eIF-4a "Eukaryotic initiation factor 4a" species:7227
"Drosophila melanogaster" [GO:0003724 "RNA helicase activity"
evidence=ISS] [GO:0006413 "translational initiation"
evidence=ISS;NAS] [GO:0016281 "eukaryotic translation initiation
factor 4F complex" evidence=ISS] [GO:0003743 "translation
initiation factor activity" evidence=ISS;NAS] [GO:0005829 "cytosol"
evidence=ISS;NAS] [GO:0017116 "single-stranded DNA-dependent
ATP-dependent DNA helicase activity" evidence=NAS] [GO:0006268 "DNA
unwinding involved in replication" evidence=NAS] [GO:0000339 "RNA
cap binding" evidence=NAS] [GO:0003729 "mRNA binding" evidence=NAS]
[GO:0007446 "imaginal disc growth" evidence=TAS] [GO:0002168
"instar larval development" evidence=TAS] [GO:0009950
"dorsal/ventral axis specification" evidence=IMP] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0000381 "regulation of alternative mRNA
splicing, via spliceosome" evidence=IMP] [GO:0005634 "nucleus"
evidence=IC] [GO:0000022 "mitotic spindle elongation" evidence=IMP]
[GO:0007052 "mitotic spindle organization" evidence=IMP]
[GO:0005875 "microtubule associated complex" evidence=IDA]
[GO:0007067 "mitosis" evidence=IMP] [GO:0006974 "response to DNA
damage stimulus" evidence=IMP] [GO:0048132 "female germ-line stem
cell division" evidence=IGI;IMP] [GO:0030718 "germ-line stem cell
maintenance" evidence=IMP] [GO:0048477 "oogenesis" evidence=IGI]
[GO:0072686 "mitotic spindle" evidence=IDA] [GO:0051297 "centrosome
organization" evidence=IMP] [GO:0005813 "centrosome" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005829 GO:GO:0005524 GO:GO:0005634
GO:GO:0005813 GO:GO:0005875 GO:GO:0007067 EMBL:AE014134
GO:GO:0051297 GO:GO:0016281 GO:GO:0006974 GO:GO:0003743
GO:GO:0030718 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0000022 GO:GO:0072686 GO:GO:0048132 GO:GO:0002168
GO:GO:0008026 GO:GO:0000381 eggNOG:COG0513 GO:GO:0003724
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0007446
GeneTree:ENSGT00530000062880 KO:K03257 OMA:TENDARQ EMBL:X69045
EMBL:AF145621 EMBL:AY069283 EMBL:AY121623 PIR:S30278
RefSeq:NP_001245907.1 RefSeq:NP_476595.1 RefSeq:NP_723137.1
RefSeq:NP_723138.1 RefSeq:NP_723139.1 UniGene:Dm.7226
ProteinModelPortal:Q02748 SMR:Q02748 DIP:DIP-18113N IntAct:Q02748
MINT:MINT-892982 STRING:Q02748 PaxDb:Q02748 PRIDE:Q02748
EnsemblMetazoa:FBtr0079175 EnsemblMetazoa:FBtr0079176
EnsemblMetazoa:FBtr0079177 EnsemblMetazoa:FBtr0079178
EnsemblMetazoa:FBtr0307068 EnsemblMetazoa:FBtr0331201 GeneID:33835
KEGG:dme:Dmel_CG9075 CTD:33835 FlyBase:FBgn0001942
InParanoid:Q02748 OrthoDB:EOG4B8GVF PhylomeDB:Q02748 ChiTaRS:eIF-4a
GenomeRNAi:33835 NextBio:785508 Bgee:Q02748 GermOnline:CG9075
Uniprot:Q02748
Length = 403
Score = 282 (104.3 bits), Expect = 1.2e-33, Sum P(2) = 1.2e-33
Identities = 84/311 (27%), Positives = 162/311 (52%)
Query: 33 LDLR--LVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFN 90
++LR L+ + G +KP+ IQQ +I + G+DV+A+A++G+GKT + + +L ++
Sbjct: 35 MNLREELLRGIYGYGFEKPSAIQQRAIIPCVRGRDVIAQAQSGTGKTATFSIAILQQI-- 92
Query: 91 ESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAAL 150
++S + AL+L PTREL Q+ VMAL E K V + + D R
Sbjct: 93 DTSIREC---QALILAPTRELATQIQRVVMALGEYMK--VHSHAC-IGGTNVREDARILE 146
Query: 151 AGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIP 210
+G +V+ TPG + ++ VL+++ +K+ VLDEAD +LS G++D ++ + ++P
Sbjct: 147 SGC-HVVVGTPGRVYDMINRKVLRTQY----IKLFVLDEADEMLSRGFKDQIQDVFKMLP 201
Query: 211 RGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKX 270
Q +L+SAT DV ++ + + +P + + K+E+ + ++QF+++ + +
Sbjct: 202 PDVQVILLSATMPPDVLEVSRCFMRDPVSILVK-----KEELTLEGIKQFYVNVKQENWK 256
Query: 271 XXXXXXXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFN 330
+++IF NT +L + + ++ ++ Q R I+++F
Sbjct: 257 LGTLCDLYDTLSITQSVIFCNTRRKVDQLTQEMSIHNFTVSAMHGDMEQRDREVIMKQFR 316
Query: 331 AGLFDYLIATD 341
+G LI TD
Sbjct: 317 SGSSRVLITTD 327
Score = 138 (53.6 bits), Expect = 1.2e-33, Sum P(2) = 1.2e-33
Identities = 23/59 (38%), Positives = 39/59 (66%)
Query: 376 VVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSF 434
+ RGID + V VIN+++P N Y+HRIGR GR G +++ ++ D+ +I ++I+ F
Sbjct: 329 LARGIDVQQVSLVINYDLPSNRENYIHRIGRGGRFGRKGVAINFITDDDRRILKDIEQF 387
>UNIPROTKB|Q81QF0 [details] [associations]
symbol:BAS2301 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:1392 "Bacillus anthracis" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:AE016879 EMBL:AE017334
EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HSSP:Q58083 HOGENOM:HOG000268807 RefSeq:NP_844851.1
RefSeq:YP_019115.1 RefSeq:YP_028562.1 ProteinModelPortal:Q81QF0
DNASU:1085525 EnsemblBacteria:EBBACT00000011128
EnsemblBacteria:EBBACT00000014583 EnsemblBacteria:EBBACT00000019769
GeneID:1085525 GeneID:2816610 GeneID:2853183 KEGG:ban:BA_2475
KEGG:bar:GBAA_2475 KEGG:bat:BAS2301 OMA:DNKGRPG
ProtClustDB:CLSK916648 BioCyc:BANT260799:GJAJ-2367-MONOMER
BioCyc:BANT261594:GJ7F-2455-MONOMER Uniprot:Q81QF0
Length = 450
Score = 283 (104.7 bits), Expect = 2.2e-33, Sum P(3) = 2.2e-33
Identities = 74/227 (32%), Positives = 123/227 (54%)
Query: 31 LGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFN 90
LG+ H L + GI + T IQ+ +IP+IL GKD++ +AKTG+GKT A++LP+L ++
Sbjct: 10 LGISETFNHTLRENGITEATPIQEKAIPVILSGKDIIGQAKTGTGKTLAFVLPILEKIDP 69
Query: 91 ESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAAL 150
ESS AL++ PTREL Q+ +E+ ++ + + V+ + + L
Sbjct: 70 ESSDVQ-----ALIVAPTRELALQITTEIKKMLVQ---REDINVLAIYGGQDVAQQLRKL 121
Query: 151 AGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIP 210
G IV+ATPG + L ++ S+ L +VLDEAD +L +G+ D++ + P
Sbjct: 122 KGNTHIVVATPG---RLLDHIRRETIDLSN-LSTIVLDEADQMLYFGFLYDIEDILDETP 177
Query: 211 RGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNV 257
Q +L SAT D+ KL K + P ++ + + +V + I + V
Sbjct: 178 GSKQTMLFSATIPKDIKKLAKRYMDEPQMIQV-QSEEVTVDTIEQRV 223
Score = 203 (76.5 bits), Expect = 2.9e-23, Sum P(3) = 2.9e-23
Identities = 67/240 (27%), Positives = 111/240 (46%)
Query: 102 ALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATP 161
AL++ PTREL Q+ +E+ ++ + + V+ + + L G IV+ATP
Sbjct: 76 ALIVAPTRELALQITTEIKKMLVQ---REDINVLAIYGGQDVAQQLRKLKGNTHIVVATP 132
Query: 162 GCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSAT 221
G + L ++ S+ L +VLDEAD +L +G+ D++ + P Q +L SAT
Sbjct: 133 G---RLLDHIRRETIDLSN-LSTIVLDEADQMLYFGFLYDIEDILDETPGSKQTMLFSAT 188
Query: 222 SSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKXXXXXXXXXXXX 281
D+ KL K + P ++ + +EV ++Q I ++R K
Sbjct: 189 IPKDIKKLAKRYMDEPQMIQVQS-----EEVTVDTIEQRVIETTDRAKPDALRFVMDRDQ 243
Query: 282 VQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATD 341
A+IF T A +L L+ G A L+ ++PQ R +++ F YLIATD
Sbjct: 244 -PFLAVIFCRTKVRASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLIATD 302
Score = 133 (51.9 bits), Expect = 2.2e-33, Sum P(3) = 2.2e-33
Identities = 24/59 (40%), Positives = 39/59 (66%)
Query: 378 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVG 436
RG+D V V N+++P++ Y+HRIGRTGRA +G +++ V+ + K EEI+ +G
Sbjct: 306 RGLDVDGVTHVFNYDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKDEKHLEEIEKTLG 364
Score = 45 (20.9 bits), Expect = 2.2e-33, Sum P(3) = 2.2e-33
Identities = 19/74 (25%), Positives = 34/74 (45%)
Query: 522 HLRDVPDYLLDAKTQ-EACKMVKLARAAMGNKNSSRRQGPRR--KFRKSDPLKSFSAEPT 578
HL ++ + L A Q E + K+ R K + P++ ++R+ D S E +
Sbjct: 355 HLEEI-EKTLGAPIQREIIEQPKIKRVDENGKPLPK-PAPKKSGEYRQRD-----SREGS 407
Query: 579 KRAGKGRMKREGRN 592
+ KGR + + RN
Sbjct: 408 RSGSKGRTRNDSRN 421
>TIGR_CMR|BA_2475 [details] [associations]
symbol:BA_2475 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:198094 "Bacillus anthracis str. Ames" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:AE016879 EMBL:AE017334
EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HSSP:Q58083 HOGENOM:HOG000268807 RefSeq:NP_844851.1
RefSeq:YP_019115.1 RefSeq:YP_028562.1 ProteinModelPortal:Q81QF0
DNASU:1085525 EnsemblBacteria:EBBACT00000011128
EnsemblBacteria:EBBACT00000014583 EnsemblBacteria:EBBACT00000019769
GeneID:1085525 GeneID:2816610 GeneID:2853183 KEGG:ban:BA_2475
KEGG:bar:GBAA_2475 KEGG:bat:BAS2301 OMA:DNKGRPG
ProtClustDB:CLSK916648 BioCyc:BANT260799:GJAJ-2367-MONOMER
BioCyc:BANT261594:GJ7F-2455-MONOMER Uniprot:Q81QF0
Length = 450
Score = 283 (104.7 bits), Expect = 2.2e-33, Sum P(3) = 2.2e-33
Identities = 74/227 (32%), Positives = 123/227 (54%)
Query: 31 LGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFN 90
LG+ H L + GI + T IQ+ +IP+IL GKD++ +AKTG+GKT A++LP+L ++
Sbjct: 10 LGISETFNHTLRENGITEATPIQEKAIPVILSGKDIIGQAKTGTGKTLAFVLPILEKIDP 69
Query: 91 ESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAAL 150
ESS AL++ PTREL Q+ +E+ ++ + + V+ + + L
Sbjct: 70 ESSDVQ-----ALIVAPTRELALQITTEIKKMLVQ---REDINVLAIYGGQDVAQQLRKL 121
Query: 151 AGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIP 210
G IV+ATPG + L ++ S+ L +VLDEAD +L +G+ D++ + P
Sbjct: 122 KGNTHIVVATPG---RLLDHIRRETIDLSN-LSTIVLDEADQMLYFGFLYDIEDILDETP 177
Query: 211 RGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNV 257
Q +L SAT D+ KL K + P ++ + + +V + I + V
Sbjct: 178 GSKQTMLFSATIPKDIKKLAKRYMDEPQMIQV-QSEEVTVDTIEQRV 223
Score = 203 (76.5 bits), Expect = 2.9e-23, Sum P(3) = 2.9e-23
Identities = 67/240 (27%), Positives = 111/240 (46%)
Query: 102 ALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATP 161
AL++ PTREL Q+ +E+ ++ + + V+ + + L G IV+ATP
Sbjct: 76 ALIVAPTRELALQITTEIKKMLVQ---REDINVLAIYGGQDVAQQLRKLKGNTHIVVATP 132
Query: 162 GCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSAT 221
G + L ++ S+ L +VLDEAD +L +G+ D++ + P Q +L SAT
Sbjct: 133 G---RLLDHIRRETIDLSN-LSTIVLDEADQMLYFGFLYDIEDILDETPGSKQTMLFSAT 188
Query: 222 SSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKXXXXXXXXXXXX 281
D+ KL K + P ++ + +EV ++Q I ++R K
Sbjct: 189 IPKDIKKLAKRYMDEPQMIQVQS-----EEVTVDTIEQRVIETTDRAKPDALRFVMDRDQ 243
Query: 282 VQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATD 341
A+IF T A +L L+ G A L+ ++PQ R +++ F YLIATD
Sbjct: 244 -PFLAVIFCRTKVRASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLIATD 302
Score = 133 (51.9 bits), Expect = 2.2e-33, Sum P(3) = 2.2e-33
Identities = 24/59 (40%), Positives = 39/59 (66%)
Query: 378 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVG 436
RG+D V V N+++P++ Y+HRIGRTGRA +G +++ V+ + K EEI+ +G
Sbjct: 306 RGLDVDGVTHVFNYDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKDEKHLEEIEKTLG 364
Score = 45 (20.9 bits), Expect = 2.2e-33, Sum P(3) = 2.2e-33
Identities = 19/74 (25%), Positives = 34/74 (45%)
Query: 522 HLRDVPDYLLDAKTQ-EACKMVKLARAAMGNKNSSRRQGPRR--KFRKSDPLKSFSAEPT 578
HL ++ + L A Q E + K+ R K + P++ ++R+ D S E +
Sbjct: 355 HLEEI-EKTLGAPIQREIIEQPKIKRVDENGKPLPK-PAPKKSGEYRQRD-----SREGS 407
Query: 579 KRAGKGRMKREGRN 592
+ KGR + + RN
Sbjct: 408 RSGSKGRTRNDSRN 421
>DICTYBASE|DDB_G0293064 [details] [associations]
symbol:DDB_G0293064 species:44689 "Dictyostelium
discoideum" [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 dictyBase:DDB_G0293064 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 EMBL:AAFI02000199
RefSeq:XP_629301.1 ProteinModelPortal:Q54CB8
EnsemblProtists:DDB0191757 GeneID:8629024 KEGG:ddi:DDB_G0293064
InParanoid:Q54CB8 OMA:VLYWSAT Uniprot:Q54CB8
Length = 573
Score = 302 (111.4 bits), Expect = 2.3e-33, Sum P(2) = 2.3e-33
Identities = 91/307 (29%), Positives = 146/307 (47%)
Query: 41 LNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAP 100
L+KK +KPT +Q P+ L G D++ +KTGSGKT +++LP + + + P
Sbjct: 155 LSKK-FEKPTPVQSLGWPIALSGSDMLGISKTGSGKTLSFILPAIEHILAQPRQSYYPGP 213
Query: 101 AALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIAT 160
+ LV+ PTREL Q+ E + L V +++ + P + L+ P IV+ T
Sbjct: 214 SVLVVAPTRELANQINQEAEQYLRL----VNIEIATIYGGAPRRSQQLQLSRRPKIVVGT 269
Query: 161 PGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSA 220
PG + + +G L K+ S LV+DEAD L+ G+E + + I Q L SA
Sbjct: 270 PGRIIDFMESGDLSLKNIS----FLVVDEADRLMEMGFEQQIDGIFNSIRPDRQVLYWSA 325
Query: 221 TSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNV-QQFWISCSERDKXXXXXXXXXX 279
T V + + P L ++G KN+ Q+F I ++ DK
Sbjct: 326 TWPKKVSSFAEKHIRTPIRL---QIGS-SQLTANKNISQKFKIVPTDADKVDALMDTLGE 381
Query: 280 X-XVQKKA--LIFTNTIDMAFRLKLFLEKFG--IKSAILNAELPQNSRLHILEEFNAGLF 334
+KA LIFT T A LK +++ G ++ L+ ++ QN R I+++F
Sbjct: 382 IYSADEKAQTLIFTMTKKGADTLKHYIQSNGDNVRIDTLHGDVDQNRRERIVQDFKNKRL 441
Query: 335 DYLIATD 341
D ++ATD
Sbjct: 442 DIVVATD 448
Score = 131 (51.2 bits), Expect = 2.3e-33, Sum P(2) = 2.3e-33
Identities = 28/67 (41%), Positives = 41/67 (61%)
Query: 378 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSP---DEMKIFEEIKSF 434
RG+D K + VINF +P + YVHRIGRTGRA G S S++S D+M++ ++ +
Sbjct: 452 RGLDIKGISHVINFSLPSDCETYVHRIGRTGRAGALGTSHSILSNNSLDDMELVGDLTNL 511
Query: 435 VGDDENE 441
+ E E
Sbjct: 512 LQRSEQE 518
>MGI|MGI:1915005 [details] [associations]
symbol:Ddx47 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 47"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005730 "nucleolus"
evidence=ISO] [GO:0006364 "rRNA processing" evidence=ISO]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0006915 "apoptotic
process" evidence=ISO] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0008380 "RNA splicing" evidence=ISO]
[GO:0016787 "hydrolase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 MGI:MGI:1915005
GO:GO:0005524 GO:GO:0006915 GO:GO:0005730 GO:GO:0008380
GO:GO:0006397 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268802
GeneTree:ENSGT00670000098028 CTD:51202 HOVERGEN:HBG100512 KO:K14777
OMA:IFIPSKF OrthoDB:EOG4TXBRS ChiTaRS:DDX47 EMBL:AK010310
EMBL:AK076982 IPI:IPI00187240 RefSeq:NP_080636.2 UniGene:Mm.166524
ProteinModelPortal:Q9CWX9 SMR:Q9CWX9 IntAct:Q9CWX9
PhosphoSite:Q9CWX9 PaxDb:Q9CWX9 PRIDE:Q9CWX9
Ensembl:ENSMUST00000032326 GeneID:67755 KEGG:mmu:67755
InParanoid:Q9CWX9 NextBio:325481 Bgee:Q9CWX9 CleanEx:MM_DDX47
Genevestigator:Q9CWX9 GermOnline:ENSMUSG00000030204 Uniprot:Q9CWX9
Length = 455
Score = 289 (106.8 bits), Expect = 2.4e-33, Sum P(2) = 2.4e-33
Identities = 79/208 (37%), Positives = 116/208 (55%)
Query: 31 LGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFN 90
LG+ L A ++ G KPT IQ +IPL L+G+D++ A+TGSGKT A+ LP+L+ L
Sbjct: 29 LGVTDVLCEACDQLGWAKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLE 88
Query: 91 ESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAAL 150
+P+ A LVL PTREL Q+ + AL + ++ + + + AL
Sbjct: 89 --TPQRLFA---LVLTPTRELAFQISEQFEAL----GSSIGVQCAVIVGGIDSMSQSLAL 139
Query: 151 AGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLKALSAVI 209
A P IVIATPG + L +K F+ +LK LV+DEAD +L+ +E ++ + VI
Sbjct: 140 AKKPHIVIATPGRLIDHLEN----TKGFNLRALKYLVMDEADRILNMDFETEVDKILKVI 195
Query: 210 PRGCQCLLMSATSSSDVDKLKKLILHNP 237
PR + L SAT + V KL++ L NP
Sbjct: 196 PRDRKTFLFSATMTKKVQKLQRAALKNP 223
Score = 227 (85.0 bits), Expect = 9.0e-26, Sum P(2) = 9.0e-26
Identities = 73/241 (30%), Positives = 114/241 (47%)
Query: 102 ALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATP 161
ALVL PTREL Q+ + AL + ++ + + + ALA P IVIATP
Sbjct: 95 ALVLTPTRELAFQISEQFEAL----GSSIGVQCAVIVGGIDSMSQSLALAKKPHIVIATP 150
Query: 162 GCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSA 220
G + L +K F+ +LK LV+DEAD +L+ +E ++ + VIPR + L SA
Sbjct: 151 GRLIDHLEN----TKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKTFLFSA 206
Query: 221 TSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKXXXXXXXXXXX 280
T + V KL++ L NP + K + + K +QQ+++ + K
Sbjct: 207 TMTKKVQKLQRAALKNPVKCAVSS----KYQTVEK-LQQYYLFIPSKFKDTYLVYILNEL 261
Query: 281 XVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIAT 340
+IF +T + R L L G + L+ ++ Q+ RL L +F A L+AT
Sbjct: 262 A-GNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSILLAT 320
Query: 341 D 341
D
Sbjct: 321 D 321
Score = 137 (53.3 bits), Expect = 2.4e-33, Sum P(2) = 2.4e-33
Identities = 21/59 (35%), Positives = 42/59 (71%)
Query: 378 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVG 436
RG+D +V V+NF++P ++ Y+HR+GRT RA +G +++ V+ ++++F+ I+ +G
Sbjct: 325 RGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRIEHLIG 383
>UNIPROTKB|Q29S22 [details] [associations]
symbol:DDX47 "Probable ATP-dependent RNA helicase DDX47"
species:9913 "Bos taurus" [GO:0005730 "nucleolus" evidence=ISS]
[GO:0008380 "RNA splicing" evidence=ISS] [GO:0006915 "apoptotic
process" evidence=ISS] [GO:0006364 "rRNA processing" evidence=ISS]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0006915 GO:GO:0005730
GO:GO:0008380 GO:GO:0006397 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268802 GeneTree:ENSGT00670000098028 EMBL:BC113207
IPI:IPI00688068 RefSeq:NP_001039850.1 UniGene:Bt.23258
ProteinModelPortal:Q29S22 SMR:Q29S22 PRIDE:Q29S22
Ensembl:ENSBTAT00000003058 GeneID:534721 KEGG:bta:534721 CTD:51202
HOVERGEN:HBG100512 InParanoid:Q29S22 KO:K14777 OMA:IFIPSKF
OrthoDB:EOG4TXBRS NextBio:20876515 Uniprot:Q29S22
Length = 457
Score = 289 (106.8 bits), Expect = 2.6e-33, Sum P(2) = 2.6e-33
Identities = 79/208 (37%), Positives = 116/208 (55%)
Query: 31 LGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFN 90
LG+ L A ++ G KPT IQ +IPL L+G+D++ A+TGSGKT A+ LP+L+ L
Sbjct: 31 LGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLE 90
Query: 91 ESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAAL 150
+P+ A LVL PTREL Q+ + AL + ++ + + + AL
Sbjct: 91 --TPQRLFA---LVLTPTRELAFQISEQFEAL----GSSIGVQCAVIVGGIDSMSQSLAL 141
Query: 151 AGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLKALSAVI 209
A P IVIATPG + L +K F+ +LK LV+DEAD +L+ +E ++ + VI
Sbjct: 142 AKKPHIVIATPGRLIDHLEN----TKGFNLRALKYLVMDEADRILNMDFETEVDKILKVI 197
Query: 210 PRGCQCLLMSATSSSDVDKLKKLILHNP 237
PR + L SAT + V KL++ L NP
Sbjct: 198 PRDRKTFLFSATMTKKVQKLQRAALKNP 225
Score = 227 (85.0 bits), Expect = 9.2e-26, Sum P(2) = 9.2e-26
Identities = 73/241 (30%), Positives = 114/241 (47%)
Query: 102 ALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATP 161
ALVL PTREL Q+ + AL + ++ + + + ALA P IVIATP
Sbjct: 97 ALVLTPTRELAFQISEQFEAL----GSSIGVQCAVIVGGIDSMSQSLALAKKPHIVIATP 152
Query: 162 GCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSA 220
G + L +K F+ +LK LV+DEAD +L+ +E ++ + VIPR + L SA
Sbjct: 153 GRLIDHLEN----TKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKTFLFSA 208
Query: 221 TSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKXXXXXXXXXXX 280
T + V KL++ L NP + K + + K +QQ+++ + K
Sbjct: 209 TMTKKVQKLQRAALKNPVKCAVSS----KYQTVEK-LQQYYLFIPSKFKDTYLVYILNEL 263
Query: 281 XVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIAT 340
+IF +T + R L L G + L+ ++ Q+ RL L +F A L+AT
Sbjct: 264 A-GNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSILLAT 322
Query: 341 D 341
D
Sbjct: 323 D 323
Score = 137 (53.3 bits), Expect = 2.6e-33, Sum P(2) = 2.6e-33
Identities = 21/59 (35%), Positives = 42/59 (71%)
Query: 378 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVG 436
RG+D +V V+NF++P ++ Y+HR+GRT RA +G +++ V+ ++++F+ I+ +G
Sbjct: 327 RGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRIEHLIG 385
>UNIPROTKB|Q9H0S4 [details] [associations]
symbol:DDX47 "Probable ATP-dependent RNA helicase DDX47"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0006915 "apoptotic process" evidence=IDA]
[GO:0008380 "RNA splicing" evidence=IMP] [GO:0006364 "rRNA
processing" evidence=IMP] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0006915 GO:GO:0005730
GO:GO:0008380 GO:GO:0006397 GO:GO:0003676 GO:GO:0003723
EMBL:CH471094 UniGene:Hs.719938 GermOnline:ENSG00000178878
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268802 CTD:51202 HOVERGEN:HBG100512 KO:K14777
OMA:IFIPSKF EMBL:AF078843 EMBL:AL136666 EMBL:AK054574 EMBL:AK127712
EMBL:AC007215 EMBL:BC009379 EMBL:BC068009 IPI:IPI00023972
IPI:IPI00397372 RefSeq:NP_057439.2 RefSeq:NP_957518.1 PDB:3BER
PDBsum:3BER ProteinModelPortal:Q9H0S4 SMR:Q9H0S4 IntAct:Q9H0S4
MINT:MINT-3056694 STRING:Q9H0S4 PhosphoSite:Q9H0S4 DMDM:52782792
SWISS-2DPAGE:Q9H0S4 PaxDb:Q9H0S4 PRIDE:Q9H0S4 DNASU:51202
Ensembl:ENST00000352940 Ensembl:ENST00000358007 GeneID:51202
KEGG:hsa:51202 UCSC:uc001rav.3 GeneCards:GC12P012966
HGNC:HGNC:18682 HPA:HPA014855 neXtProt:NX_Q9H0S4
PharmGKB:PA134918403 InParanoid:Q9H0S4 PhylomeDB:Q9H0S4
ChiTaRS:DDX47 EvolutionaryTrace:Q9H0S4 GenomeRNAi:51202
NextBio:54238 ArrayExpress:Q9H0S4 Bgee:Q9H0S4 CleanEx:HS_DDX47
Genevestigator:Q9H0S4 Uniprot:Q9H0S4
Length = 455
Score = 288 (106.4 bits), Expect = 3.2e-33, Sum P(2) = 3.2e-33
Identities = 83/208 (39%), Positives = 116/208 (55%)
Query: 31 LGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFN 90
LG+ L A ++ G KPT IQ +IPL L+G+D++ A+TGSGKT A+ LP+L+ L
Sbjct: 29 LGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLE 88
Query: 91 ESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAAL 150
+P+ A LVL PTREL Q+ SE + G +V SM S AL
Sbjct: 89 --TPQRLFA---LVLTPTRELAFQI-SEQFEALGSSIGVQSAVIVGGIDSMSQS---LAL 139
Query: 151 AGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLKALSAVI 209
A P I+IATPG + L +K F+ +LK LV+DEAD +L+ +E ++ + VI
Sbjct: 140 AKKPHIIIATPGRLIDHLEN----TKGFNLRALKYLVMDEADRILNMDFETEVDKILKVI 195
Query: 210 PRGCQCLLMSATSSSDVDKLKKLILHNP 237
PR + L SAT + V KL++ L NP
Sbjct: 196 PRDRKTFLFSATMTKKVQKLQRAALKNP 223
Score = 228 (85.3 bits), Expect = 6.8e-26, Sum P(2) = 6.8e-26
Identities = 78/241 (32%), Positives = 114/241 (47%)
Query: 102 ALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATP 161
ALVL PTREL Q+ SE + G +V SM S ALA P I+IATP
Sbjct: 95 ALVLTPTRELAFQI-SEQFEALGSSIGVQSAVIVGGIDSMSQS---LALAKKPHIIIATP 150
Query: 162 GCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSA 220
G + L +K F+ +LK LV+DEAD +L+ +E ++ + VIPR + L SA
Sbjct: 151 GRLIDHLEN----TKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKTFLFSA 206
Query: 221 TSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKXXXXXXXXXXX 280
T + V KL++ L NP + K + + K +QQ++I + K
Sbjct: 207 TMTKKVQKLQRAALKNPVKCAVSS----KYQTVEK-LQQYYIFIPSKFKDTYLVYILNEL 261
Query: 281 XVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIAT 340
+IF +T + R L L G + L+ ++ Q+ RL L +F A L+AT
Sbjct: 262 A-GNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSILLAT 320
Query: 341 D 341
D
Sbjct: 321 D 321
Score = 137 (53.3 bits), Expect = 3.2e-33, Sum P(2) = 3.2e-33
Identities = 21/59 (35%), Positives = 42/59 (71%)
Query: 378 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVG 436
RG+D +V V+NF++P ++ Y+HR+GRT RA +G +++ V+ ++++F+ I+ +G
Sbjct: 325 RGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRIEHLIG 383
>MGI|MGI:1915247 [details] [associations]
symbol:Ddx59 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 59"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 MGI:MGI:1915247
GO:GO:0005524 GO:GO:0046872 GO:GO:0003723 GO:GO:0005622
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR007529
Pfam:PF04438 PROSITE:PS51083 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HSSP:P09052
GeneTree:ENSGT00610000086076 CTD:83479 HOGENOM:HOG000006599
HOVERGEN:HBG106120 OMA:VTRPIID EMBL:AK004833 EMBL:AK013179
EMBL:AK076462 EMBL:BC023840 IPI:IPI00119928 IPI:IPI00226119
RefSeq:NP_080776.1 UniGene:Mm.385462 UniGene:Mm.486546
ProteinModelPortal:Q9DBN9 SMR:Q9DBN9 PhosphoSite:Q9DBN9
PRIDE:Q9DBN9 Ensembl:ENSMUST00000027655 GeneID:67997 KEGG:mmu:67997
UCSC:uc007cut.1 UCSC:uc007cuu.2 InParanoid:Q9DBN9 OrthoDB:EOG4K9BBZ
ChiTaRS:DDX59 NextBio:326168 Bgee:Q9DBN9 CleanEx:MM_DDX59
Genevestigator:Q9DBN9 Uniprot:Q9DBN9
Length = 619
Score = 310 (114.2 bits), Expect = 3.7e-33, Sum P(2) = 3.7e-33
Identities = 94/302 (31%), Positives = 146/302 (48%)
Query: 41 LNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAP 100
L K G + PT IQ IP+ L G+D++A A TGSGKT A+LLP++ R F+E P
Sbjct: 218 LKKSGYEVPTPIQMQMIPVGLLGRDILASADTGSGKTAAFLLPVIIRAFSEDK-----TP 272
Query: 101 AALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIAT 160
+AL+L PTREL Q+ + EL G ++K V L +P L ++IAT
Sbjct: 273 SALILTPTRELAIQIERQAK---ELMSGLPRMKTVLLVGGLPLPPQLYRLRQHVKVIIAT 329
Query: 161 PGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSA 220
PG + L + QS +KI+V+DEAD +L G++ + + P CQ +L+SA
Sbjct: 330 PG---RLLDI-IKQSSVSLSGIKIVVVDEADTMLKMGFQQQVLDVLEHTPGDCQTILVSA 385
Query: 221 TSSSDVDKLKKLILHNPY-ILTLPEVGDVKDEVIPKNVQQFWISCSERDKXXXXXXXXXX 279
T +++L +LHNP I+T GD W+ + K
Sbjct: 386 TIPDSIEQLTDQLLHNPVRIIT----GDKNLPCASVRQIILWVEDPAKKKKLFEILNDQK 441
Query: 280 XXVQKKALIFTNTIDMAFRLKLFLEKF-GIKSAILNAELPQNSRLHILEEFNAGLFDYLI 338
+ L+F + A L ++K G+ S +++E Q R IL+ G ++ ++
Sbjct: 442 LF-KPPVLVFVDCKLGADLLSEAVQKITGLNSTSIHSEKSQVERRDILKGLLEGDYEVVV 500
Query: 339 AT 340
+T
Sbjct: 501 ST 502
Score = 122 (48.0 bits), Expect = 3.7e-33, Sum P(2) = 3.7e-33
Identities = 21/58 (36%), Positives = 38/58 (65%)
Query: 375 GVV-RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEI 431
GV+ RG+D NV V+NF+MP + YVH++GR GR G +++ ++ + ++F ++
Sbjct: 503 GVLGRGLDLVNVKLVVNFDMPSSMDEYVHQVGRVGRLGQNGTAITFINNNSKRLFWDV 560
>UNIPROTKB|E2RN03 [details] [associations]
symbol:DDX47 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0006915 "apoptotic process" evidence=IEA] [GO:0006364 "rRNA
processing" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0006915
GO:GO:0005730 GO:GO:0008380 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00670000098028
OMA:IFIPSKF EMBL:AAEX03015248 Ensembl:ENSCAFT00000020996
NextBio:20853120 Uniprot:E2RN03
Length = 482
Score = 289 (106.8 bits), Expect = 4.9e-33, Sum P(2) = 4.9e-33
Identities = 84/208 (40%), Positives = 116/208 (55%)
Query: 31 LGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFN 90
LG+ L A ++ G KPT IQ +IPL L+G+D++ A+TGSGKT A+ LP+L+ L
Sbjct: 55 LGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLE 114
Query: 91 ESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAAL 150
+P+ A LVL PTREL Q+ SE + G +V SM S AL
Sbjct: 115 --TPQRLFA---LVLTPTRELAFQI-SEQFEALGSSIGVQSAVIVGGIDSMSQS---LAL 165
Query: 151 AGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLKALSAVI 209
A P IVIATPG + L +K F+ +LK LV+DEAD +L+ +E ++ + VI
Sbjct: 166 AKKPHIVIATPGRLIDHLEN----TKGFNLRALKYLVMDEADRILNMDFETEVDKILKVI 221
Query: 210 PRGCQCLLMSATSSSDVDKLKKLILHNP 237
PR + L SAT + V KL++ L NP
Sbjct: 222 PRDRKTFLFSATMTKKVQKLQRAALKNP 249
Score = 227 (85.0 bits), Expect = 1.3e-25, Sum P(2) = 1.3e-25
Identities = 78/241 (32%), Positives = 114/241 (47%)
Query: 102 ALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATP 161
ALVL PTREL Q+ SE + G +V SM S ALA P IVIATP
Sbjct: 121 ALVLTPTRELAFQI-SEQFEALGSSIGVQSAVIVGGIDSMSQS---LALAKKPHIVIATP 176
Query: 162 GCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSA 220
G + L +K F+ +LK LV+DEAD +L+ +E ++ + VIPR + L SA
Sbjct: 177 GRLIDHLEN----TKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKTFLFSA 232
Query: 221 TSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKXXXXXXXXXXX 280
T + V KL++ L NP + K + + K +QQ+++ + K
Sbjct: 233 TMTKKVQKLQRAALKNPVKCAVSS----KYQTVEK-LQQYYLFIPSKFKDTYLVYILNEL 287
Query: 281 XVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIAT 340
+IF +T + R L L G + L+ ++ Q+ RL L +F A L+AT
Sbjct: 288 A-GNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSILLAT 346
Query: 341 D 341
D
Sbjct: 347 D 347
Score = 137 (53.3 bits), Expect = 4.9e-33, Sum P(2) = 4.9e-33
Identities = 21/59 (35%), Positives = 42/59 (71%)
Query: 378 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVG 436
RG+D +V V+NF++P ++ Y+HR+GRT RA +G +++ V+ ++++F+ I+ +G
Sbjct: 351 RGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRIEHLIG 409
>TIGR_CMR|CPS_2658 [details] [associations]
symbol:CPS_2658 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:CP000083
GenomeReviews:CP000083_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268807 RefSeq:YP_269372.1
ProteinModelPortal:Q480Z7 GeneID:3520428 KEGG:cps:CPS_2658
PATRIC:21468367 OMA:ERNFDSS BioCyc:CPSY167879:GI48-2720-MONOMER
Uniprot:Q480Z7
Length = 399
Score = 284 (105.0 bits), Expect = 5.0e-33, Sum P(2) = 5.0e-33
Identities = 87/306 (28%), Positives = 156/306 (50%)
Query: 37 LVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLF-NESSPK 95
++ +N KG ++PT IQ+ IP ++ G D++ A+TG+GKT A+ LP++++ N+ K
Sbjct: 13 IIDRVNLKGYKQPTPIQKECIPALINGNDLLGIAQTGTGKTAAFSLPIINKFGRNKIDIK 72
Query: 96 SKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAALAGPPD 155
+K + +L+L PTREL S++M I+ + LK + + ++ D
Sbjct: 73 AK-STRSLILTPTRELA----SQIMQNIDDYSDGLGLKTKVVYGGVGRQAQVDSIELGLD 127
Query: 156 IVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQC 215
I++ATPG + + TG + K+ L++ VLDEAD +L G+ D++++ + +P+ Q
Sbjct: 128 ILVATPGRLLDLIETGDINFKA----LEVFVLDEADTMLDMGFFKDVQSIISKLPKSRQT 183
Query: 216 LLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKXXXXXX 275
LL SAT ++++ L + IL +P + + V +++ ++V ++
Sbjct: 184 LLFSATMPAEIEILAEAILTDPTKIQIT-AETVTIDLVNQSVYHL-----DKSNKVPLLF 237
Query: 276 XXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFD 335
+K LIF T A + LEK I +A L++ Q R L+ F
Sbjct: 238 NILTKADYEKVLIFCKTKYGADIIVKALEKASITAASLHSGKTQAVREEALQNFKDSTLR 297
Query: 336 YLIATD 341
L+ATD
Sbjct: 298 VLVATD 303
Score = 127 (49.8 bits), Expect = 5.0e-33, Sum P(2) = 5.0e-33
Identities = 22/59 (37%), Positives = 38/59 (64%)
Query: 378 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVG 436
RGID N+ VIN+ +P++ Y+HRIGRT RA +G ++S ++++ I++ +G
Sbjct: 307 RGIDVDNITLVINYNLPEDPRNYIHRIGRTARAGKSGMAISFAVENDIRQLTNIENSIG 365
>UNIPROTKB|I3LV06 [details] [associations]
symbol:DDX59 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005622 "intracellular" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GO:GO:0005622 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR007529 Pfam:PF04438 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00610000086076
CTD:83479 OMA:VTRPIID EMBL:FP312674 RefSeq:XP_003357711.1
Ensembl:ENSSSCT00000031167 GeneID:100621580 KEGG:ssc:100621580
Uniprot:I3LV06
Length = 607
Score = 312 (114.9 bits), Expect = 5.1e-33, Sum P(2) = 5.1e-33
Identities = 96/302 (31%), Positives = 152/302 (50%)
Query: 41 LNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAP 100
L G + PT IQ IP+ L G+D++A A TGSGKT A+LLP++ R +S AP
Sbjct: 206 LKTAGYEVPTPIQMQMIPVGLLGRDLLASADTGSGKTAAFLLPVITRALVQSK-----AP 260
Query: 101 AALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIAT 160
+ALVL PTREL Q+ + EL G +++ L +PA L ++IAT
Sbjct: 261 SALVLTPTRELAIQIERQAK---ELMGGLPRMRTALLVGGLPAPPQLHRLRQRVQVIIAT 317
Query: 161 PGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSA 220
PG + + QS ++KI+V+DEAD +L G+++ + + +P+ CQ +L+SA
Sbjct: 318 PGRLLDIMK----QSSVDLGNIKIVVVDEADTMLKMGFQEQVLDVLENVPQDCQTILVSA 373
Query: 221 TSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQ-QFWISCSERDKXXXXXXXXXX 279
T + +++L +LH+P + L G+ K+ P Q W+ K
Sbjct: 374 TIPTRIEQLASRLLHDP-VRVL--AGE-KNLPCPSVRQIVLWVE-EPAKKKKLFEILNDK 428
Query: 280 XXVQKKALIFTNTIDMAFRLKLFLEKF-GIKSAILNAELPQNSRLHILEEFNAGLFDYLI 338
+ L+F + A L +EK G+KS +++E Q R ILE G +D ++
Sbjct: 429 KLFKPPVLVFVDCKLGADLLSEAVEKITGLKSTSMHSEKSQIERKTILEGLLEGDYDVVV 488
Query: 339 AT 340
+T
Sbjct: 489 ST 490
Score = 118 (46.6 bits), Expect = 5.1e-33, Sum P(2) = 5.1e-33
Identities = 31/122 (25%), Positives = 62/122 (50%)
Query: 375 GVV-RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKS 433
GV+ RG+D +V V+NF+MP + YVH++GR GR G +++ ++ + ++F +I
Sbjct: 491 GVLGRGLDLISVKLVVNFDMPSSMDEYVHQVGRVGRLGQNGTAITFINNNSKRLFWDIAK 550
Query: 434 FVGDDENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDL--RNEILNS 491
V + + + P LL + + + + K + V + D+ +++ NS
Sbjct: 551 RV-----KPTGSLLPPQLLNSPYLHEQKRKEQQKDKQMQNDLVTGANLMDIIRKHDKSNS 605
Query: 492 EK 493
+K
Sbjct: 606 QK 607
>UNIPROTKB|Q5ZLB0 [details] [associations]
symbol:DDX47 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0006364 "rRNA processing" evidence=IEA]
[GO:0006915 "apoptotic process" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0006915
GO:GO:0005730 GO:GO:0008380 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268802 GeneTree:ENSGT00670000098028 CTD:51202
HOVERGEN:HBG100512 KO:K14777 OMA:IFIPSKF OrthoDB:EOG4TXBRS
EMBL:AADN02006011 EMBL:AADN02006010 EMBL:AJ719824 IPI:IPI00584081
RefSeq:NP_001007854.1 UniGene:Gga.13941 SMR:Q5ZLB0 STRING:Q5ZLB0
Ensembl:ENSGALT00000019245 GeneID:417959 KEGG:gga:417959
InParanoid:Q5ZLB0 NextBio:20821184 Uniprot:Q5ZLB0
Length = 453
Score = 283 (104.7 bits), Expect = 5.1e-33, Sum P(2) = 5.1e-33
Identities = 81/208 (38%), Positives = 116/208 (55%)
Query: 31 LGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFN 90
LG+ L A ++ G + PT IQ +IP+ L+G+D++ A+TGSGKT A+ LP+L L +
Sbjct: 30 LGVTDVLCEACDQLGWKVPTKIQVEAIPVALQGRDIIGLAETGSGKTGAFALPILQALLD 89
Query: 91 ESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAAL 150
+P+ A LVL PTREL Q+ SE + G +V SM S AL
Sbjct: 90 --APQRLFA---LVLTPTRELAFQI-SEQFEALGSSIGVHSAVIVGGIDSMSQS---LAL 140
Query: 151 AGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLKALSAVI 209
A P I+IATPG + L +K F+ +LK LV+DEAD +L+ +E ++ + VI
Sbjct: 141 AKKPHIIIATPGRLVDHLEN----TKGFNLRALKFLVMDEADRILNMDFETEVDKILKVI 196
Query: 210 PRGCQCLLMSATSSSDVDKLKKLILHNP 237
PR + L SAT + V KL++ L NP
Sbjct: 197 PRDRKTFLFSATMTKQVQKLQRAALKNP 224
Score = 235 (87.8 bits), Expect = 3.8e-27, Sum P(2) = 3.8e-27
Identities = 79/241 (32%), Positives = 114/241 (47%)
Query: 102 ALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATP 161
ALVL PTREL Q+ SE + G +V SM S ALA P I+IATP
Sbjct: 96 ALVLTPTRELAFQI-SEQFEALGSSIGVHSAVIVGGIDSMSQS---LALAKKPHIIIATP 151
Query: 162 GCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSA 220
G + L +K F+ +LK LV+DEAD +L+ +E ++ + VIPR + L SA
Sbjct: 152 GRLVDHLEN----TKGFNLRALKFLVMDEADRILNMDFETEVDKILKVIPRDRKTFLFSA 207
Query: 221 TSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKXXXXXXXXXXX 280
T + V KL++ L NP + K + + K +QQ++I + K
Sbjct: 208 TMTKQVQKLQRAALKNPVKCAVSS----KYQTVEK-LQQYYIFIPSKFKDSYLVYILNEL 262
Query: 281 XVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIAT 340
+IF +T + R L L G + L+ ++ QN RL L +F A L+AT
Sbjct: 263 A-GNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQNKRLGSLNKFKAKARSILLAT 321
Query: 341 D 341
D
Sbjct: 322 D 322
Score = 141 (54.7 bits), Expect = 5.1e-33, Sum P(2) = 5.1e-33
Identities = 23/59 (38%), Positives = 42/59 (71%)
Query: 378 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVG 436
RG+D +V VINF++P ++ Y+HR+GRT RA +G S++ V+ ++++F+ I+ +G
Sbjct: 326 RGLDIPHVDVVINFDIPTHSKDYIHRVGRTARAGRSGKSITFVTQYDVELFQRIEHLIG 384
>SGD|S000001212 [details] [associations]
symbol:DBP8 "ATPase, putative RNA helicase" species:4932
"Saccharomyces cerevisiae" [GO:0030686 "90S preribosome"
evidence=IDA] [GO:0000472 "endonucleolytic cleavage to generate
mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IMP] [GO:0005730 "nucleolus" evidence=IEA;IDA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006364 "rRNA processing" evidence=IEA] [GO:0000447
"endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S
rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S
rRNA, LSU-rRNA)" evidence=IMP] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=IMP] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0000480 "endonucleolytic cleavage in 5'-ETS of
tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IMP] [GO:0016887 "ATPase activity" evidence=IDA]
[GO:0042254 "ribosome biogenesis" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 SGD:S000001212 GO:GO:0005524
GO:GO:0005730 EMBL:BK006934 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:U00027 GO:GO:0030686
GO:GO:0004004 GO:GO:0000447 GO:GO:0000472 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 KO:K14778 HOGENOM:HOG000268802
OrthoDB:EOG4PP1RW PIR:S48908 RefSeq:NP_012039.1
ProteinModelPortal:P38719 SMR:P38719 DIP:DIP-5628N IntAct:P38719
MINT:MINT-485349 STRING:P38719 PaxDb:P38719 PeptideAtlas:P38719
EnsemblFungi:YHR169W GeneID:856574 KEGG:sce:YHR169W CYGD:YHR169w
GeneTree:ENSGT00700000105515 OMA:FRNLCAI NextBio:982426
Genevestigator:P38719 GermOnline:YHR169W GO:GO:0000480
Uniprot:P38719
Length = 431
Score = 306 (112.8 bits), Expect = 5.7e-33, Sum P(2) = 5.7e-33
Identities = 103/316 (32%), Positives = 153/316 (48%)
Query: 31 LGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFN 90
LGL L +L I +PT IQ+A IP ILEG+D + AKTGSGKT A+ P+L + ++
Sbjct: 7 LGLSKWLTESLRAMKITQPTAIQKACIPKILEGRDCIGGAKTGSGKTIAFAGPMLTK-WS 65
Query: 91 ESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAAL 150
E P +VL PTREL Q+ + AL +V + V + A DL+
Sbjct: 66 ED-PSGMFG---VVLTPTRELAMQIAEQFTALGSSMNIRVSVIVGGESIVQQALDLQRK- 120
Query: 151 AGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKA-LSAVI 209
P +IATPG + + + + K LVLDEAD+LL+ + D L +SA+
Sbjct: 121 ---PHFIIATPGRLAHHIMSSGDDTVGGLMRAKYLVLDEADILLTSTFADHLATCISALP 177
Query: 210 PRGC-QCLLMSATSSSDVDKLKKLILHN--PYILTLPEVGDVKDEVIPKNVQQFWISCSE 266
P+ Q LL +AT + V L+ + P + +V V + IP ++ +I E
Sbjct: 178 PKDKRQTLLFTATITDQVKSLQNAPVQKGKPPLFAY-QVESVDNVAIPSTLKIEYILVPE 236
Query: 267 RDKXXXXXXXXXXXXVQKK-ALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHI 325
K + K A+IF N A L+ L++ ++ A L++++PQ R +
Sbjct: 237 HVKEAYLYQLLTCEEYENKTAIIFVNRTMTAEILRRTLKQLEVRVASLHSQMPQQERTNS 296
Query: 326 LEEFNAGLFDYLIATD 341
L F A LIATD
Sbjct: 297 LHRFRANAARILIATD 312
Score = 104 (41.7 bits), Expect = 5.7e-33, Sum P(2) = 5.7e-33
Identities = 19/68 (27%), Positives = 37/68 (54%)
Query: 378 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGD 437
RG+D V V+N+++P + ++HR GRT RA G ++S V+ ++ + I+ +
Sbjct: 316 RGLDIPTVELVVNYDIPSDPDVFIHRSGRTARAGRIGDAISFVTQRDVSRIQAIEDRINK 375
Query: 438 DENEDSNI 445
E + +
Sbjct: 376 KMTETNKV 383
>UNIPROTKB|E2R4Y9 [details] [associations]
symbol:DDX59 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR007529 Pfam:PF04438
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00610000086076 OMA:VTRPIID EMBL:AAEX03005031
Ensembl:ENSCAFT00000017696 Uniprot:E2R4Y9
Length = 623
Score = 312 (114.9 bits), Expect = 6.0e-33, Sum P(2) = 6.0e-33
Identities = 94/310 (30%), Positives = 152/310 (49%)
Query: 32 GLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNE 91
G L H L G + PT IQ IP+ L G+DV+A A TGSGKT A+LLP++ R E
Sbjct: 210 GFPEALNHNLKTSGYEVPTPIQMQMIPVGLLGRDVLASADTGSGKTAAFLLPVITRALCE 269
Query: 92 SSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAALA 151
S P+AL+L PTREL Q+ ++ EL G ++K V L +P L
Sbjct: 270 SK-----TPSALILTPTRELAIQIENQAK---ELMSGLPRMKTVLLVGGLPLPPQLYRLR 321
Query: 152 GPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPR 211
++IATPG + L + QS +KI+V+DEAD +L G++ + + +P
Sbjct: 322 QHVKVIIATPG---RLLDI-IKQSSVELCGIKIVVVDEADTMLKMGFQQQVLDILEHVPN 377
Query: 212 GCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKXX 271
Q +L+SAT + +++L +LHNP + E ++ + + + W+ K
Sbjct: 378 DSQTILVSATIPTSIEQLASQLLHNPVRIITGEK-NLPCSSVRQII--LWVE-EPAKKKK 433
Query: 272 XXXXXXXXXXVQKKALIFTNTIDMAFRLKLFLEKF-GIKSAILNAELPQNSRLHILEEFN 330
+ L+F + A L ++K G+KS +++E Q R +IL+
Sbjct: 434 LFEILNDKKLFKPPVLVFVDCKLGADLLSEAVQKITGLKSVSIHSEKSQTERKNILKGLL 493
Query: 331 AGLFDYLIAT 340
G ++ +++T
Sbjct: 494 EGDYEVVVST 503
Score = 118 (46.6 bits), Expect = 6.0e-33, Sum P(2) = 6.0e-33
Identities = 21/58 (36%), Positives = 38/58 (65%)
Query: 375 GVV-RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEI 431
GV+ RG+D +V V+NF+MP + YVH++GR GR G +++ ++ + ++F +I
Sbjct: 504 GVLGRGLDLISVRLVVNFDMPSSMDEYVHQVGRVGRLGQNGTAITFINNNSKRLFWDI 561
>TAIR|locus:2084178 [details] [associations]
symbol:DRH1 "DEAD box RNA helicase 1" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IDA] [GO:0016887 "ATPase activity" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001202 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 Pfam:PF00397
PROSITE:PS00039 PROSITE:PS01159 PROSITE:PS50020 PROSITE:PS51194
SMART:SM00456 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000184 GO:GO:0003723
EMBL:AC009325 SUPFAM:SSF51045 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006364 GO:GO:0004004 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268804 KO:K12823
EMBL:AB010259 EMBL:AY062591 EMBL:AF428313 EMBL:AY050375
EMBL:BT000795 EMBL:BT009670 IPI:IPI00544638 IPI:IPI00545196
PIR:T52137 RefSeq:NP_001030619.1 RefSeq:NP_566141.1
RefSeq:NP_850492.1 RefSeq:NP_974206.1 UniGene:At.22096
ProteinModelPortal:Q8H136 SMR:Q8H136 IntAct:Q8H136 STRING:Q8H136
PaxDb:Q8H136 PRIDE:Q8H136 EnsemblPlants:AT3G01540.2
EnsemblPlants:AT3G01540.3 EnsemblPlants:AT3G01540.4 GeneID:821116
KEGG:ath:AT3G01540 GeneFarm:931 TAIR:At3g01540 InParanoid:Q8H136
OMA:DPSTEAY PhylomeDB:Q8H136 ProtClustDB:CLSN2687967
Genevestigator:Q8H136 GermOnline:AT3G01540 Uniprot:Q8H136
Length = 619
Score = 310 (114.2 bits), Expect = 6.0e-33, Sum P(2) = 6.0e-33
Identities = 98/315 (31%), Positives = 152/315 (48%)
Query: 32 GLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLP-LLH--RL 88
G L+ + G PT IQ S P+ ++G+D+VA AKTGSGKT YL+P LH R+
Sbjct: 164 GFPPELLREVLSAGFSAPTPIQAQSWPIAMQGRDIVAIAKTGSGKTLGYLIPGFLHLQRI 223
Query: 89 FNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRA 148
N+S ++ P LVL PTREL Q+ E ++ + ++ L P
Sbjct: 224 RNDS----RMGPTILVLSPTRELATQIQEEA---VKFGRSS-RISCTCLYGGAPKGPQLR 275
Query: 149 ALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLKALSA 207
L DIV+ATPG + +L+ + S + LVLDEAD +L G+E ++ +
Sbjct: 276 DLERGADIVVATPGRL-----NDILEMRRISLRQISYLVLDEADRMLDMGFEPQIRKIVK 330
Query: 208 VIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSER 267
IP Q L+ +AT V K+ +L NP + +G+V + V K++ Q +
Sbjct: 331 EIPTKRQTLMYTATWPKGVRKIAADLLVNPAQVN---IGNVDELVANKSITQHIEVVAPM 387
Query: 268 DKXXXXXXXXXXXXVQKKALIFTNTIDMAFRLKLFLEK-FGIKSAILNAELPQNSRLHIL 326
+K K +IF +T M +L L + FG +A ++ + Q R ++L
Sbjct: 388 EKQRRLEQILRSQEPGSKVIIFCSTKRMCDQLTRNLTRQFG--AAAIHGDKSQPERDNVL 445
Query: 327 EEFNAGLFDYLIATD 341
+F +G L+ATD
Sbjct: 446 NQFRSGRTPVLVATD 460
Score = 120 (47.3 bits), Expect = 6.0e-33, Sum P(2) = 6.0e-33
Identities = 26/80 (32%), Positives = 42/80 (52%)
Query: 347 EKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGR 406
+K Q + ++ +S + P L + RG+D K++ V+N++ P YVHRIGR
Sbjct: 435 DKSQPERDNVLNQFRSGRTPV--LVATDVAARGLDVKDIRAVVNYDFPNGVEDYVHRIGR 492
Query: 407 TGRAYNTGASVSLVSPDEMK 426
TGRA TG + + + K
Sbjct: 493 TGRAGATGQAFTFFGDQDSK 512
>UNIPROTKB|F1S7D9 [details] [associations]
symbol:DDX49 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 KO:K14778 OMA:EVRTVEQ
GeneTree:ENSGT00670000098028 CTD:54555 EMBL:CU640483
RefSeq:XP_003123587.1 UniGene:Ssc.79767 Ensembl:ENSSSCT00000025399
GeneID:100526038 KEGG:ssc:100526038 Uniprot:F1S7D9
Length = 483
Score = 317 (116.6 bits), Expect = 7.0e-33, Sum P(2) = 7.0e-33
Identities = 102/318 (32%), Positives = 154/318 (48%)
Query: 31 LGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFN 90
LGL LV + G+++PT +Q IP ILEG+D + AKTGSGKT A++LP+L +L
Sbjct: 7 LGLSSWLVEQCRQLGLKQPTPVQLGCIPAILEGRDCLGCAKTGSGKTAAFVLPILQKLSE 66
Query: 91 ESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAAL 150
+ P LVL PTREL Q+ + L + + LK + M L
Sbjct: 67 D--PYGIFC---LVLTPTRELAYQIAEQFRVLGK----PLGLKDCIIVGGMDMVAQALEL 117
Query: 151 AGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYED---DLKALS 206
+ P +VIATPG + L + S +FS ++ LV+DEAD LL G D DL+A+
Sbjct: 118 SRKPHVVIATPGRLADHLRS----SNTFSIKKIRFLVMDEADRLLEQGCTDFTVDLEAIL 173
Query: 207 AVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSE 266
A +P Q LL SAT + + +L+ L + P+ V+ + + Q ++ E
Sbjct: 174 AAVPARRQTLLFSATLTDTLRELQSLATNQPFFWEAQ--APVRTV---EQLDQRYLLVPE 228
Query: 267 RDKXXXXXXXXXXXXVQKK---ALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRL 323
+ K + + +IFTNT L + L KF + L++ + Q R
Sbjct: 229 KVKDAYLVHLIQNFQDEHEDWSIIIFTNTCKTCQILCMMLRKFNFPTVALHSMMKQKERF 288
Query: 324 HILEEFNAGLFDYLIATD 341
L +F + ++ LIATD
Sbjct: 289 AALAKFKSSIYRILIATD 306
Score = 101 (40.6 bits), Expect = 7.0e-33, Sum P(2) = 7.0e-33
Identities = 23/73 (31%), Positives = 40/73 (54%)
Query: 378 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIF----EEIKS 433
RG+D V VIN P Y+HR+GRT RA G +++LV+ ++ + E+IK
Sbjct: 310 RGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRQGQAITLVTQYDIHLVHAIEEQIKK 369
Query: 434 FVGDDENEDSNII 446
+ + E++ ++
Sbjct: 370 KLEEFSVEEAEVL 382
>MGI|MGI:2136689 [details] [associations]
symbol:Ddx49 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 49"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0016787 "hydrolase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 MGI:MGI:2136689 GO:GO:0005524
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K14778 HOGENOM:HOG000268802 OMA:EVRTVEQ
GeneTree:ENSGT00670000098028 HOVERGEN:HBG100512 CTD:54555
OrthoDB:EOG4C87SC EMBL:BC099554 IPI:IPI00354271
RefSeq:NP_001020093.2 UniGene:Mm.388127 UniGene:Mm.440659
ProteinModelPortal:Q4FZF3 SMR:Q4FZF3 PhosphoSite:Q4FZF3
PRIDE:Q4FZF3 Ensembl:ENSMUST00000008004 GeneID:234374
KEGG:mmu:234374 UCSC:uc009lzu.1 InParanoid:Q4FZF3 NextBio:382139
Bgee:Q4FZF3 CleanEx:MM_DDX49 Genevestigator:Q4FZF3
GermOnline:ENSMUSG00000057788 Uniprot:Q4FZF3
Length = 480
Score = 310 (114.2 bits), Expect = 8.4e-33, Sum P(3) = 8.4e-33
Identities = 101/318 (31%), Positives = 153/318 (48%)
Query: 31 LGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFN 90
+GL LV + G+++PT +Q IP ILEG+D + AKTGSGKT A++LP+L +L
Sbjct: 7 IGLSSWLVEQCRQLGLKQPTPVQLGCIPAILEGRDCLGCAKTGSGKTAAFVLPILQKLSE 66
Query: 91 ESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAAL 150
+ P LVL PTREL Q+ + L + + LK + M L
Sbjct: 67 D--PYGIFC---LVLTPTRELAYQIAEQFRVLGK----PLGLKDCIIVGGMDMVAQALEL 117
Query: 151 AGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYED---DLKALS 206
+ P +VIATPG + L + S +F+ ++ LV+DEAD LL G D DL+ +
Sbjct: 118 SRKPHVVIATPGRLADHLRS----SNTFNMKKIQFLVMDEADRLLEQGCTDFTTDLETIL 173
Query: 207 AVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSE 266
A +P Q LL SAT + + +L+ L + P+ E V + + Q ++ E
Sbjct: 174 AAVPARRQTLLFSATLTDTLKELQGLATNEPFFW---EAQATVRTV--EQLDQRYLLVPE 228
Query: 267 RDKXXXXXXXXXXXXVQKK---ALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRL 323
+ K Q + +IFTNT L + L KF + L++ + Q R
Sbjct: 229 KVKDAYLVHLVQTFQDQLEDCSIIIFTNTCKTCQILCMMLRKFNFPTVALHSMMKQKERF 288
Query: 324 HILEEFNAGLFDYLIATD 341
L +F + ++ LIATD
Sbjct: 289 AALAKFKSSIYRILIATD 306
Score = 101 (40.6 bits), Expect = 8.4e-33, Sum P(3) = 8.4e-33
Identities = 23/73 (31%), Positives = 40/73 (54%)
Query: 378 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIF----EEIKS 433
RG+D V VIN P Y+HR+GRT RA G +++LV+ ++ + E+IK
Sbjct: 310 RGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRQGQAITLVTQYDIHLLHAIEEQIKQ 369
Query: 434 FVGDDENEDSNII 446
+ + E++ ++
Sbjct: 370 QLAELVVEEAEVL 382
Score = 40 (19.1 bits), Expect = 8.4e-33, Sum P(3) = 8.4e-33
Identities = 16/55 (29%), Positives = 23/55 (41%)
Query: 527 PDYLLDAKTQEACKMVKLARAAMGNK--NSSRRQGPRRKFRKSDPLKSFSAEPTK 579
PD L+AK + +K K + RRQ R+S P +S EP +
Sbjct: 423 PD--LEAKRKAELAKIKQQNRRFKEKVGQTLRRQKAGSTVRRSRPPRSRPQEPAQ 475
>UNIPROTKB|Q9Y6V7 [details] [associations]
symbol:DDX49 "Probable ATP-dependent RNA helicase DDX49"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
EMBL:AC002985 KO:K14778 HOGENOM:HOG000268802 OMA:EVRTVEQ
HOVERGEN:HBG100512 EMBL:AK223294 EMBL:BC002674 IPI:IPI00003739
RefSeq:NP_061943.2 UniGene:Hs.143187 ProteinModelPortal:Q9Y6V7
SMR:Q9Y6V7 IntAct:Q9Y6V7 STRING:Q9Y6V7 PhosphoSite:Q9Y6V7
DMDM:74753527 PaxDb:Q9Y6V7 PRIDE:Q9Y6V7 DNASU:54555
Ensembl:ENST00000247003 GeneID:54555 KEGG:hsa:54555 UCSC:uc002nkq.2
CTD:54555 GeneCards:GC19P019030 HGNC:HGNC:18684 neXtProt:NX_Q9Y6V7
PharmGKB:PA134956171 InParanoid:Q9Y6V7 OrthoDB:EOG4C87SC
PhylomeDB:Q9Y6V7 GenomeRNAi:54555 NextBio:57032 ArrayExpress:Q9Y6V7
Bgee:Q9Y6V7 CleanEx:HS_DDX49 Genevestigator:Q9Y6V7
GermOnline:ENSG00000105671 Uniprot:Q9Y6V7
Length = 483
Score = 316 (116.3 bits), Expect = 9.4e-33, Sum P(2) = 9.4e-33
Identities = 103/318 (32%), Positives = 154/318 (48%)
Query: 31 LGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFN 90
LGL LV + G+++PT +Q IP ILEG+D + AKTGSGKT A++LP+L +L
Sbjct: 7 LGLSSWLVEQCRQLGLKQPTPVQLGCIPAILEGRDCLGCAKTGSGKTAAFVLPILQKLSE 66
Query: 91 ESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAAL 150
+ P LVL PTREL Q+ + L + + LK + M L
Sbjct: 67 D--PYGIFC---LVLTPTRELAYQIAEQFRVLGK----PLGLKDCIIVGGMDMVAQALEL 117
Query: 151 AGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYED---DLKALS 206
+ P +VIATPG + L + S +FS ++ LV+DEAD LL G D DL+A+
Sbjct: 118 SRKPHVVIATPGRLADHLRS----SNTFSIKKIRFLVMDEADRLLEQGCTDFTVDLEAIL 173
Query: 207 AVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSE 266
A +P Q LL SAT + + +L+ L + P+ E V + + Q ++ E
Sbjct: 174 AAVPARRQTLLFSATLTDTLRELQGLATNQPFFW---EAQAPVSTV--EQLDQRYLLVPE 228
Query: 267 RDKXXXXXXXXXXXXVQKK---ALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRL 323
+ K + + +IFTNT L + L KF + L++ + Q R
Sbjct: 229 KVKDAYLVHLIQRFQDEHEDWSIIIFTNTCKTCQILCMMLRKFSFPTVALHSMMKQKERF 288
Query: 324 HILEEFNAGLFDYLIATD 341
L +F + ++ LIATD
Sbjct: 289 AALAKFKSSIYRILIATD 306
Score = 101 (40.6 bits), Expect = 9.4e-33, Sum P(2) = 9.4e-33
Identities = 23/73 (31%), Positives = 40/73 (54%)
Query: 378 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIF----EEIKS 433
RG+D V VIN P Y+HR+GRT RA G +++LV+ ++ + E+IK
Sbjct: 310 RGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRQGQAITLVTQYDIHLVHAIEEQIKK 369
Query: 434 FVGDDENEDSNII 446
+ + E++ ++
Sbjct: 370 KLEEFSVEEAEVL 382
>ZFIN|ZDB-GENE-031030-3 [details] [associations]
symbol:ddx49 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
49" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-031030-3 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 KO:K14778
HOVERGEN:HBG100512 CTD:54555 EMBL:BC047834 IPI:IPI00551936
RefSeq:NP_938179.1 UniGene:Dr.77634 ProteinModelPortal:Q7ZUT9
STRING:Q7ZUT9 GeneID:386632 KEGG:dre:386632 InParanoid:Q7ZUT9
NextBio:20813961 ArrayExpress:Q7ZUT9 Uniprot:Q7ZUT9
Length = 468
Score = 311 (114.5 bits), Expect = 9.7e-33, Sum P(2) = 9.7e-33
Identities = 97/318 (30%), Positives = 155/318 (48%)
Query: 31 LGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFN 90
LGL L+ + GI +PT +Q+ IP IL+G+D + AKTGSGKT A++LP+L +L
Sbjct: 7 LGLSEWLIQQCKQMGISRPTAVQEKCIPAILDGRDCMGCAKTGSGKTAAFVLPVLQKLSE 66
Query: 91 ESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAAL 150
+ P LVL PTREL Q+ + L + + LK + M L
Sbjct: 67 D--PYGVFC---LVLTPTRELAYQIAEQFRVLGK----PLGLKDCIIVGGMDMVTQGLEL 117
Query: 151 AGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYED---DLKALS 206
+ P +V+ATPG L+ + S + + + ++ L++DEAD LL G D DL+ +
Sbjct: 118 SKKPHVVVATPGR----LADHIRSSDTINLNRIQFLIMDEADRLLEQGCTDFTKDLEVIL 173
Query: 207 AVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSE 266
+ +P Q LL SAT + + +L+ + ++ P+ DV + + + Q+F I E
Sbjct: 174 SAVPAKRQTLLFSATLTDTLQQLQSIAMNRPFFWE--HKSDV--QTVEELDQRF-ILTPE 228
Query: 267 RDKXXXXXXXXXXXXVQK---KALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRL 323
+ K + +IFTNT L + L +F + L++ + Q R
Sbjct: 229 KVKDAYLVHLIQTFQDEHDDWSIIIFTNTCKSCQILTMMLREFNFPTISLHSMMKQRQRF 288
Query: 324 HILEEFNAGLFDYLIATD 341
L +F + +F LIATD
Sbjct: 289 ANLAKFKSNVFKILIATD 306
Score = 105 (42.0 bits), Expect = 9.7e-33, Sum P(2) = 9.7e-33
Identities = 21/55 (38%), Positives = 31/55 (56%)
Query: 378 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIK 432
RG+D V VIN P Y+HR+GRT RA G S++LV+ ++ + I+
Sbjct: 310 RGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRNGVSITLVTQYDIHLINAIE 364
>SGD|S000003046 [details] [associations]
symbol:DBP3 "RNA-Dependent ATPase, member of DExD/H-box
family" species:4932 "Saccharomyces cerevisiae" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=IDA] [GO:0005730
"nucleolus" evidence=IEA;IDA] [GO:0030687 "preribosome, large
subunit precursor" evidence=IDA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006364 "rRNA
processing" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0042254 "ribosome biogenesis" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0008186 "RNA-dependent ATPase activity" evidence=IDA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000464
"endonucleolytic cleavage in ITS1 upstream of 5.8S rRNA from
tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IMP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 SGD:S000003046 GO:GO:0005524
GO:GO:0005730 EMBL:BK006941 GO:GO:0003723 GO:GO:0030687
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268804 KO:K14811 OrthoDB:EOG42JS0S EMBL:M80437
EMBL:Z72600 PIR:S30805 RefSeq:NP_011437.3 RefSeq:NP_011442.3
ProteinModelPortal:P20447 SMR:P20447 DIP:DIP-2668N IntAct:P20447
MINT:MINT-1164200 STRING:P20447 PaxDb:P20447 PeptideAtlas:P20447
EnsemblFungi:YGL078C GeneID:852802 GeneID:852806 KEGG:sce:YGL073W
KEGG:sce:YGL078C CYGD:YGL078c GeneTree:ENSGT00680000100003
KO:K09419 OMA:EEEWPEK NextBio:972321 Genevestigator:P20447
GermOnline:YGL078C GO:GO:0000464 Uniprot:P20447
Length = 523
Score = 302 (111.4 bits), Expect = 9.9e-33, Sum P(2) = 9.9e-33
Identities = 96/313 (30%), Positives = 151/313 (48%)
Query: 31 LGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFN 90
L LD + ++K KPT IQ + P +L GKDVV A+TGSGKTFA+ +P + L N
Sbjct: 119 LSLDSSIQAEISK--FPKPTPIQAVAWPYLLSGKDVVGVAETGSGKTFAFGVPAISHLMN 176
Query: 91 ESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAAL 150
+ + K LV+ PTREL Q+Y ++ L + +V ++ + +P + R L
Sbjct: 177 D---QKKRGIQVLVISPTRELASQIYDNLIVLTD----KVGMQCCCVYGGVPKDEQRIQL 229
Query: 151 AGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIP 210
+V+ATPG + L G S S + LVLDEAD +L G+E+D+K +
Sbjct: 230 K-KSQVVVATPGRLLDLLQEG---SVDLSQ-VNYLVLDEADRMLEKGFEEDIKNIIRETD 284
Query: 211 RGC-QCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVK-DEVIPKNVQQFWISCSERD 268
Q L+ +AT +V +L ++NP +++ + ++ I + V+ ER
Sbjct: 285 ASKRQTLMFTATWPKEVRELASTFMNNPIKVSIGNTDQLTANKRITQIVEVVDPRGKERK 344
Query: 269 KXXXXXXXXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEE 328
+K LIF A R++ L+ G A ++ +L Q R L E
Sbjct: 345 LLELLKKYHSGPKKNEKVLIFALYKKEAARVERNLKYNGYNVAAIHGDLSQQQRTQALNE 404
Query: 329 FNAGLFDYLIATD 341
F +G + L+ATD
Sbjct: 405 FKSGKSNLLLATD 417
Score = 122 (48.0 bits), Expect = 9.9e-33, Sum P(2) = 9.9e-33
Identities = 25/47 (53%), Positives = 29/47 (61%)
Query: 378 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDE 424
RG+D NV TVIN P YVHRIGRTGRA TG + +L + E
Sbjct: 421 RGLDIPNVKTVINLTFPLTVEDYVHRIGRTGRAGQTGTAHTLFTEQE 467
Score = 47 (21.6 bits), Expect = 0.00020, Sum P(2) = 0.00020
Identities = 11/33 (33%), Positives = 19/33 (57%)
Query: 341 DDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSE 373
++ K++ DE ++ +KSKKH K K D +
Sbjct: 4 EEIADKKRKVVDEEV-IEKKKSKKHKKDKKDKK 35
>UNIPROTKB|Q9KLE2 [details] [associations]
symbol:VC_A0804 "ATP-dependent RNA helicase DeaD"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0000910 "cytokinesis" evidence=ISS] [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=ISS] [GO:0016070 "RNA metabolic
process" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
GO:GO:0000910 EMBL:AE003853 GenomeReviews:AE003853_GR GO:GO:0016070
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
InterPro:IPR014014 PROSITE:PS51195 KO:K05592 InterPro:IPR005580
Pfam:PF03880 HSSP:P10081 OMA:ILFMTPR PIR:C82415 RefSeq:NP_233190.1
ProteinModelPortal:Q9KLE2 DNASU:2612819 GeneID:2612819
KEGG:vch:VCA0804 PATRIC:20086156 ProtClustDB:CLSK789062
Uniprot:Q9KLE2
Length = 663
Score = 308 (113.5 bits), Expect = 1.0e-32, Sum P(3) = 1.0e-32
Identities = 84/232 (36%), Positives = 127/232 (54%)
Query: 31 LGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFN 90
L L+ ++ AL + G PT IQ A+IP++LEG+D + +A+TG+GKT A+ LPLL++L N
Sbjct: 31 LALNSAILSALTEMGFVSPTPIQAAAIPVLLEGRDALGKAQTGTGKTAAFSLPLLNKL-N 89
Query: 91 ESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAAL 150
S K P A+V+ PTREL QV +E+ L + KG LKV+++ D AL
Sbjct: 90 LSQYK----PQAIVMAPTRELAIQVAAEIKNLGQNIKG---LKVLEIYGGASILDQMRAL 142
Query: 151 AGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIP 210
IV+ TPG + K L T + + D +LDEAD +L G+ DD+ + P
Sbjct: 143 KSGAHIVVGTPGRV-KDLIT---RDRLHLDECHTFILDEADEMLKMGFVDDVTWIMEQAP 198
Query: 211 RGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWI 262
Q +L SAT V ++ + L NP + + G ++ + K QQ+W+
Sbjct: 199 ESAQRVLFSATMPPMVKEIVERFLRNPECVDV--AGS--NQTVAKVEQQYWV 246
Score = 242 (90.2 bits), Expect = 7.2e-25, Sum P(3) = 7.2e-25
Identities = 74/247 (29%), Positives = 118/247 (47%)
Query: 96 SKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAALAGPPD 155
S+ P A+V+ PTREL QV +E+ L + KG LKV+++ D AL
Sbjct: 91 SQYKPQAIVMAPTRELAIQVAAEIKNLGQNIKG---LKVLEIYGGASILDQMRALKSGAH 147
Query: 156 IVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQC 215
IV+ TPG + K L T + + D +LDEAD +L G+ DD+ + P Q
Sbjct: 148 IVVGTPGRV-KDLIT---RDRLHLDECHTFILDEADEMLKMGFVDDVTWIMEQAPESAQR 203
Query: 216 LLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCS-ERDKXXXXX 274
+L SAT V ++ + L NP + + G ++ + K QQ+W+ E+D+
Sbjct: 204 VLFSATMPPMVKEIVERFLRNPECVDV--AGS--NQTVAKVEQQYWVVKGVEKDEAMARL 259
Query: 275 XXXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLF 334
+++F T RL +L G K+A L+ ++PQ+ R ++ G+
Sbjct: 260 LETEETDA---SIVFVRTRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIKQGVI 316
Query: 335 DYLIATD 341
D L+ATD
Sbjct: 317 DILVATD 323
Score = 117 (46.2 bits), Expect = 1.0e-32, Sum P(3) = 1.0e-32
Identities = 21/57 (36%), Positives = 36/57 (63%)
Query: 376 VVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIK 432
V RG+D + V N+++P + Y+HRIGRTGRA G ++ LV +++++ I+
Sbjct: 325 VARGLDVPRITHVYNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRTIE 381
Score = 43 (20.2 bits), Expect = 1.0e-32, Sum P(3) = 1.0e-32
Identities = 15/58 (25%), Positives = 27/58 (46%)
Query: 546 RAAMGNKNSSRRQGPRRKFRKSDPLKSFSAEPTKRAGKGRMKREGRNGDDTGKHKKKK 603
R GN+ R G R R+ + P R G+ R +R R+G+ +G ++ ++
Sbjct: 600 RRPEGNREGGFRGG-REGGREGGRGRGGEGRPF-REGERRFERN-RSGESSGSYRGER 654
>TIGR_CMR|VC_A0804 [details] [associations]
symbol:VC_A0804 "ATP-dependent RNA helicase DeaD"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0000910
"cytokinesis" evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISS] [GO:0016070 "RNA metabolic process"
evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
GO:GO:0000910 EMBL:AE003853 GenomeReviews:AE003853_GR GO:GO:0016070
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
InterPro:IPR014014 PROSITE:PS51195 KO:K05592 InterPro:IPR005580
Pfam:PF03880 HSSP:P10081 OMA:ILFMTPR PIR:C82415 RefSeq:NP_233190.1
ProteinModelPortal:Q9KLE2 DNASU:2612819 GeneID:2612819
KEGG:vch:VCA0804 PATRIC:20086156 ProtClustDB:CLSK789062
Uniprot:Q9KLE2
Length = 663
Score = 308 (113.5 bits), Expect = 1.0e-32, Sum P(3) = 1.0e-32
Identities = 84/232 (36%), Positives = 127/232 (54%)
Query: 31 LGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFN 90
L L+ ++ AL + G PT IQ A+IP++LEG+D + +A+TG+GKT A+ LPLL++L N
Sbjct: 31 LALNSAILSALTEMGFVSPTPIQAAAIPVLLEGRDALGKAQTGTGKTAAFSLPLLNKL-N 89
Query: 91 ESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAAL 150
S K P A+V+ PTREL QV +E+ L + KG LKV+++ D AL
Sbjct: 90 LSQYK----PQAIVMAPTRELAIQVAAEIKNLGQNIKG---LKVLEIYGGASILDQMRAL 142
Query: 151 AGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIP 210
IV+ TPG + K L T + + D +LDEAD +L G+ DD+ + P
Sbjct: 143 KSGAHIVVGTPGRV-KDLIT---RDRLHLDECHTFILDEADEMLKMGFVDDVTWIMEQAP 198
Query: 211 RGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWI 262
Q +L SAT V ++ + L NP + + G ++ + K QQ+W+
Sbjct: 199 ESAQRVLFSATMPPMVKEIVERFLRNPECVDV--AGS--NQTVAKVEQQYWV 246
Score = 242 (90.2 bits), Expect = 7.2e-25, Sum P(3) = 7.2e-25
Identities = 74/247 (29%), Positives = 118/247 (47%)
Query: 96 SKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAALAGPPD 155
S+ P A+V+ PTREL QV +E+ L + KG LKV+++ D AL
Sbjct: 91 SQYKPQAIVMAPTRELAIQVAAEIKNLGQNIKG---LKVLEIYGGASILDQMRALKSGAH 147
Query: 156 IVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQC 215
IV+ TPG + K L T + + D +LDEAD +L G+ DD+ + P Q
Sbjct: 148 IVVGTPGRV-KDLIT---RDRLHLDECHTFILDEADEMLKMGFVDDVTWIMEQAPESAQR 203
Query: 216 LLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCS-ERDKXXXXX 274
+L SAT V ++ + L NP + + G ++ + K QQ+W+ E+D+
Sbjct: 204 VLFSATMPPMVKEIVERFLRNPECVDV--AGS--NQTVAKVEQQYWVVKGVEKDEAMARL 259
Query: 275 XXXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLF 334
+++F T RL +L G K+A L+ ++PQ+ R ++ G+
Sbjct: 260 LETEETDA---SIVFVRTRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIKQGVI 316
Query: 335 DYLIATD 341
D L+ATD
Sbjct: 317 DILVATD 323
Score = 117 (46.2 bits), Expect = 1.0e-32, Sum P(3) = 1.0e-32
Identities = 21/57 (36%), Positives = 36/57 (63%)
Query: 376 VVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIK 432
V RG+D + V N+++P + Y+HRIGRTGRA G ++ LV +++++ I+
Sbjct: 325 VARGLDVPRITHVYNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRTIE 381
Score = 43 (20.2 bits), Expect = 1.0e-32, Sum P(3) = 1.0e-32
Identities = 15/58 (25%), Positives = 27/58 (46%)
Query: 546 RAAMGNKNSSRRQGPRRKFRKSDPLKSFSAEPTKRAGKGRMKREGRNGDDTGKHKKKK 603
R GN+ R G R R+ + P R G+ R +R R+G+ +G ++ ++
Sbjct: 600 RRPEGNREGGFRGG-REGGREGGRGRGGEGRPF-REGERRFERN-RSGESSGSYRGER 654
>UNIPROTKB|F1NVJ6 [details] [associations]
symbol:DDX43 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR001650 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR011545 Pfam:PF00013 Pfam:PF00270
Pfam:PF00271 PROSITE:PS50084 PROSITE:PS51194 SMART:SM00322
SMART:SM00490 GO:GO:0005524 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00660000095174 OMA:VLDITHV
EMBL:AADN02002507 EMBL:AADN02002508 IPI:IPI00594090
Ensembl:ENSGALT00000025673 Uniprot:F1NVJ6
Length = 642
Score = 292 (107.8 bits), Expect = 1.0e-32, Sum P(2) = 1.0e-32
Identities = 102/304 (33%), Positives = 143/304 (47%)
Query: 41 LNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLA- 99
+ K G QKPT IQ + P+IL+G D++ A+TG+GKT AYL+P L ++ PK K
Sbjct: 255 IRKTGFQKPTPIQSQAWPIILQGIDLIGIAQTGTGKTLAYLMPGFIHLASQPIPKDKRGG 314
Query: 100 PAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIA 159
P LVL PTREL QV +E + KG + + + + G DIVIA
Sbjct: 315 PGMLVLAPTRELALQVEAECLKYTY--KGFKSICIYG--GGDRKAQINVVTKGV-DIVIA 369
Query: 160 TPGCMPKCLSTGVLQSKSFSDSLKILVL-DEADLLLSYGYEDDL-KALSAVIPRGCQCLL 217
TPG + LQ +F + I L +EAD +L G+E + K L V P Q ++
Sbjct: 370 TPGRLND------LQMNNFINLKSITYLANEADRMLDMGFEPQIMKILIDVRPDR-QTVM 422
Query: 218 MSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKXXXXXXXX 277
MSAT V +L K L NP I+ VG + D V+Q I +E +K
Sbjct: 423 MSATWPDGVRRLAKSYLRNPMIVY---VGTL-DLAAVNTVEQKVIVINEEEKKAFMENFI 478
Query: 278 XXXXVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYL 337
+ KA+IF A + L G+ L+ + Q R L++F G L
Sbjct: 479 DSMKPKDKAIIFVGKKSTADDIASDLGVQGVPVQSLHGDREQCDREQALDDFKKGKVRIL 538
Query: 338 IATD 341
+ATD
Sbjct: 539 VATD 542
Score = 139 (54.0 bits), Expect = 1.0e-32, Sum P(2) = 1.0e-32
Identities = 37/134 (27%), Positives = 68/134 (50%)
Query: 347 EKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGR 406
+++Q D +D K K + + ++ RG+D ++ V NF+ P+N YVHR+GR
Sbjct: 517 DREQCDREQALDDFKKGK-VRILVATDLAS-RGLDVHDITHVFNFDFPRNIEEYVHRVGR 574
Query: 407 TGRAYNTGASVSLVSPDEMKIFEEIKSFVGDDENEDSNIIAPFPLLAQNAVESLRYRAED 466
TGRA TG +V+L++ + K E+ + + + + P L++ + RY+
Sbjct: 575 TGRAGRTGKAVTLITKKDWKAASELIDIL-----QRAKQVVPDELISM----AERYKQHQ 625
Query: 467 VAKSVTKIAVRESR 480
+ K + K +R R
Sbjct: 626 IRKEMEKDILRPQR 639
>DICTYBASE|DDB_G0280147 [details] [associations]
symbol:ddx47 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0042254 "ribosome biogenesis"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0006364 "rRNA processing" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0280147 GO:GO:0005524
GO:GO:0005730 GenomeReviews:CM000152_GR GO:GO:0003723
EMBL:AAFI02000035 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HSSP:Q5STU4 KO:K14777 OMA:IFIPSKF
RefSeq:XP_641271.1 ProteinModelPortal:Q54VT4 SMR:Q54VT4
EnsemblProtists:DDB0234204 GeneID:8622403 KEGG:ddi:DDB_G0280147
Uniprot:Q54VT4
Length = 546
Score = 282 (104.3 bits), Expect = 1.1e-32, Sum P(2) = 1.1e-32
Identities = 72/208 (34%), Positives = 114/208 (54%)
Query: 31 LGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFN 90
LG+ +++ A NK G KP IQ+ SIP L+G+D++ A+TGSGKT A+++P+L +L
Sbjct: 124 LGVHPQIIDACNKLGFNKPKEIQRESIPWALKGRDIIGLAQTGSGKTAAFVIPVLQKLLE 183
Query: 91 ESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAAL 150
+P+ L L PTREL Q+ + A+ + +K L + + AL
Sbjct: 184 --APQGLFC---LALAPTRELAYQIADQFNAI----GSTIGVKTCVLVGGIDSMSQSLAL 234
Query: 151 AGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLKALSAVI 209
A P +V+ +PG + L +K F+ S+K ++DEAD L S +E+++ + VI
Sbjct: 235 AKKPHVVVGSPGRVLHHLE----HTKGFNLRSIKYFIMDEADRLFSADFEEEVNNILKVI 290
Query: 210 PRGCQCLLMSATSSSDVDKLKKLILHNP 237
P+ L SAT +S V KL++ L NP
Sbjct: 291 PKERNTYLFSATMTSKVAKLQRASLVNP 318
Score = 207 (77.9 bits), Expect = 5.0e-24, Sum P(2) = 5.0e-24
Identities = 65/241 (26%), Positives = 112/241 (46%)
Query: 103 LVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPG 162
L L PTREL Q+ + A+ + +K L + + ALA P +V+ +PG
Sbjct: 191 LALAPTRELAYQIADQFNAI----GSTIGVKTCVLVGGIDSMSQSLALAKKPHVVVGSPG 246
Query: 163 CMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSAT 221
+ L +K F+ S+K ++DEAD L S +E+++ + VIP+ L SAT
Sbjct: 247 RVLHHLE----HTKGFNLRSIKYFIMDEADRLFSADFEEEVNNILKVIPKERNTYLFSAT 302
Query: 222 SSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQF-WISCSERDKXXXXXXXXXXX 280
+S V KL++ L NP + + K + + +QQ+ ++ +D
Sbjct: 303 MTSKVAKLQRASLVNPVKVQVAS----KYQTVDTLLQQYLFVPFKYKDCYLAYILNELAG 358
Query: 281 XVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIAT 340
+ +IFT+T + ++ + L G + +N ++ Q RL L +F G L+AT
Sbjct: 359 NL---TIIFTSTCASSTKIAMMLRNLGFGAIPINGDMDQGKRLASLNKFKQGTKSILVAT 415
Query: 341 D 341
D
Sbjct: 416 D 416
Score = 146 (56.5 bits), Expect = 1.1e-32, Sum P(2) = 1.1e-32
Identities = 31/85 (36%), Positives = 56/85 (65%)
Query: 352 DEGGHVDS-RKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRA 410
D+G + S K K+ K+ L + RG+D +V VIN+++P N+ YVHR+GRT RA
Sbjct: 393 DQGKRLASLNKFKQGTKSILVATDVAARGLDIPSVDLVINYDVPTNSKEYVHRVGRTARA 452
Query: 411 YNTGASVSLVSPDEMKIFEEIKSFV 435
N+G ++++V+ ++++++ I+ FV
Sbjct: 453 GNSGRAITIVTQYDVEMYQRIE-FV 476
>SGD|S000006040 [details] [associations]
symbol:DBP1 "Putative ATP-dependent RNA helicase of the
DEAD-box protein family" species:4932 "Saccharomyces cerevisiae"
[GO:0005737 "cytoplasm" evidence=IEA;IDA] [GO:0006413
"translational initiation" evidence=IEA;IMP] [GO:0003724 "RNA
helicase activity" evidence=ISS] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003743
"translation initiation factor activity" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006412 "translation" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 SGD:S000006040 GO:GO:0005524
GO:GO:0005737 GO:GO:0006413 EMBL:BK006949 GO:GO:0003743 EMBL:U43503
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195
EMBL:X55993 PIR:S62003 RefSeq:NP_015206.1 ProteinModelPortal:P24784
SMR:P24784 DIP:DIP-2576N IntAct:P24784 MINT:MINT-426870
STRING:P24784 PaxDb:P24784 EnsemblFungi:YPL119C GeneID:855984
KEGG:sce:YPL119C CYGD:YPL119c GeneTree:ENSGT00620000087942
HOGENOM:HOG000268804 KO:K11594 OMA:DELLMEN OrthoDB:EOG4XPTQ4
NextBio:980825 Genevestigator:P24784 GermOnline:YPL119C
Uniprot:P24784
Length = 617
Score = 293 (108.2 bits), Expect = 1.3e-32, Sum P(2) = 1.3e-32
Identities = 100/322 (31%), Positives = 153/322 (47%)
Query: 33 LDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNES 92
LD L+ + KPT +Q+ SIP++ +G+D++A A+TGSGKT +L PL LF
Sbjct: 161 LDELLMENIKLASFTKPTPVQKYSIPIVTKGRDLMACAQTGSGKTGGFLFPLFTELFRSG 220
Query: 93 -SPKSKLA---------PAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMP 142
SP + A P+ALVL PTREL Q++ E + V+ VV + +
Sbjct: 221 PSPVPEKAQSFYSRKGYPSALVLAPTRELATQIFEEARKFTY--RSWVRPCVVYGGAPI- 277
Query: 143 ASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDL 202
+ +R G D+++ATPG + L G + S ++ +K LVLDEAD +L G+E +
Sbjct: 278 GNQMREVDRGC-DLLVATPGRLNDLLERGKV---SLAN-IKYLVLDEADRMLDMGFEPQI 332
Query: 203 KAL--SAVIP--RGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQ 258
+ + +P Q L+ SAT D+ L + L N L++ VG + N+
Sbjct: 333 RHIVEECDMPSVENRQTLMFSATFPVDIQHLARDFLDNYIFLSVGRVGSTSE-----NIT 387
Query: 259 QFWISCSERDKXXXXXXXXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELP 318
Q + + DK + LIF T MA +L FL K+ ++ +
Sbjct: 388 QRILYVDDMDKKSALLDLLSAEH-KGLTLIFVETKRMADQLTDFLIMQNFKATAIHGDRT 446
Query: 319 QNSRLHILEEFNAGLFDYLIAT 340
Q R L F A + D L+AT
Sbjct: 447 QAERERALSAFKANVADILVAT 468
Score = 136 (52.9 bits), Expect = 1.3e-32, Sum P(2) = 1.3e-32
Identities = 26/64 (40%), Positives = 38/64 (59%)
Query: 378 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGD 437
RG+D NV VIN+++P + YVHRIGRTGRA NTG + S + + I + + + +
Sbjct: 473 RGLDIPNVTHVINYDLPSDIDDYVHRIGRTGRAGNTGVATSFFNSNNQNIVKGLMEILNE 532
Query: 438 DENE 441
E
Sbjct: 533 ANQE 536
>UNIPROTKB|I3LHW0 [details] [associations]
symbol:I3LHW0 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR011545
Pfam:PF00013 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS50084 PROSITE:PS51194 SMART:SM00322 SMART:SM00490
GO:GO:0005524 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00660000095174 Ensembl:ENSSSCT00000032137 OMA:FESQIMK
Uniprot:I3LHW0
Length = 621
Score = 286 (105.7 bits), Expect = 1.3e-32, Sum P(2) = 1.3e-32
Identities = 104/321 (32%), Positives = 154/321 (47%)
Query: 37 LVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLP-LLHRLFNESSPK 95
L+ ++ K G QKPT IQ + P++L+G D++ A+TG+GKT +YL+P +H S
Sbjct: 226 LMKSIKKAGFQKPTPIQSQAWPIVLQGIDLIGIAQTGTGKTLSYLMPGFIHLNSQPVSRG 285
Query: 96 SKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSS-MPASDLRAALAGPP 154
+ P LVL PTREL QV +E KG LK V + ++ + G
Sbjct: 286 KRNGPGMLVLTPTRELALQVGAECSKYSY--KG---LKSVCIYGGGNRKGQIQDIMKGV- 339
Query: 155 DIVIATPGCMPKCLSTGVLQSKSFSD--SLKILVLDEADLLLSYGYEDDL-KALSAVIPR 211
DI+IATPG + LQ +F + S+ LVLDEAD +L G+E + K L V P
Sbjct: 340 DIIIATPGRLND------LQMNNFVNLRSITYLVLDEADKMLDLGFEHQIMKILLDVRPD 393
Query: 212 GCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKXX 271
Q ++ SAT + +L L P ++ VG + D V V+Q I +E +K
Sbjct: 394 R-QTIMTSATWPDTIRQLAHSYLKEPMLVY---VGTL-DLVAVDTVKQNIIITTEEEKRS 448
Query: 272 XXXXXXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNA 331
+ K ++F + +A L L GI L+ + Q+ R L++F
Sbjct: 449 LFQEFLQSLSPKDKVIVFVSRKLIADDLSSDLSIQGIPVQSLHGDREQSDRERALDDFKT 508
Query: 332 GLFDYLIATDDTQTKEKDQSD 352
G LIATD ++ D SD
Sbjct: 509 GKVKILIATD-LASRGLDVSD 528
Score = 144 (55.7 bits), Expect = 1.3e-32, Sum P(2) = 1.3e-32
Identities = 32/85 (37%), Positives = 51/85 (60%)
Query: 347 EKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGR 406
+++QSD +D K+ K K + ++ RG+D +V V N+ P+N YVHR+GR
Sbjct: 493 DREQSDRERALDDFKTGK-VKILIATDLAS-RGLDVSDVTHVFNYNFPRNIEEYVHRVGR 550
Query: 407 TGRAYNTGASVSLVSPDEMKIFEEI 431
TGRA G SV+L++ D+ K+ E+
Sbjct: 551 TGRAGKMGESVTLMTQDDWKVAGEL 575
>UNIPROTKB|F1SQ03 [details] [associations]
symbol:LOC100524536 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR011545
Pfam:PF00013 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS50084 PROSITE:PS51194 SMART:SM00322 SMART:SM00490
GO:GO:0005524 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
OMA:GLKSICI EMBL:CU927956 RefSeq:XP_003135023.1
ProteinModelPortal:F1SQ03 Ensembl:ENSSSCT00000013311
GeneID:100524536 Uniprot:F1SQ03
Length = 630
Score = 286 (105.7 bits), Expect = 1.4e-32, Sum P(2) = 1.4e-32
Identities = 104/321 (32%), Positives = 154/321 (47%)
Query: 37 LVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLP-LLHRLFNESSPK 95
L+ ++ K G QKPT IQ + P++L+G D++ A+TG+GKT +YL+P +H S
Sbjct: 235 LMKSIKKAGFQKPTPIQSQAWPIVLQGIDLIGIAQTGTGKTLSYLMPGFIHLNSQPVSRG 294
Query: 96 SKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSS-MPASDLRAALAGPP 154
+ P LVL PTREL QV +E KG LK V + ++ + G
Sbjct: 295 KRNGPGMLVLTPTRELALQVGAECSKYSY--KG---LKSVCIYGGGNRKGQIQDIMKGV- 348
Query: 155 DIVIATPGCMPKCLSTGVLQSKSFSD--SLKILVLDEADLLLSYGYEDDL-KALSAVIPR 211
DI+IATPG + LQ +F + S+ LVLDEAD +L G+E + K L V P
Sbjct: 349 DIIIATPGRLND------LQMNNFVNLRSITYLVLDEADKMLDLGFEHQIMKILLDVRPD 402
Query: 212 GCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKXX 271
Q ++ SAT + +L L P ++ VG + D V V+Q I +E +K
Sbjct: 403 R-QTIMTSATWPDTIRQLAHSYLKEPMLVY---VGTL-DLVAVDTVKQNIIITTEEEKRS 457
Query: 272 XXXXXXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNA 331
+ K ++F + +A L L GI L+ + Q+ R L++F
Sbjct: 458 LFQEFLQSLSPKDKVIVFVSRKLIADDLSSDLSIQGIPVQSLHGDREQSDRERALDDFKT 517
Query: 332 GLFDYLIATDDTQTKEKDQSD 352
G LIATD ++ D SD
Sbjct: 518 GKVKILIATD-LASRGLDVSD 537
Score = 144 (55.7 bits), Expect = 1.4e-32, Sum P(2) = 1.4e-32
Identities = 32/85 (37%), Positives = 51/85 (60%)
Query: 347 EKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGR 406
+++QSD +D K+ K K + ++ RG+D +V V N+ P+N YVHR+GR
Sbjct: 502 DREQSDRERALDDFKTGK-VKILIATDLAS-RGLDVSDVTHVFNYNFPRNIEEYVHRVGR 559
Query: 407 TGRAYNTGASVSLVSPDEMKIFEEI 431
TGRA G SV+L++ D+ K+ E+
Sbjct: 560 TGRAGKMGESVTLMTQDDWKVAGEL 584
>UNIPROTKB|E2RBM7 [details] [associations]
symbol:DDX49 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 KO:K14778
OMA:EVRTVEQ GeneTree:ENSGT00670000098028 CTD:54555
EMBL:AAEX03012274 RefSeq:XP_541930.1 ProteinModelPortal:E2RBM7
Ensembl:ENSCAFT00000023054 GeneID:484814 KEGG:cfa:484814
NextBio:20858886 Uniprot:E2RBM7
Length = 488
Score = 316 (116.3 bits), Expect = 1.4e-32, Sum P(2) = 1.4e-32
Identities = 102/318 (32%), Positives = 154/318 (48%)
Query: 31 LGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFN 90
LGL LV + G+++PT +Q IP ILEG+D + AKTGSGKT A++LP+L +L
Sbjct: 7 LGLSSWLVEQCRQLGLKQPTPVQLGCIPAILEGRDCLGCAKTGSGKTAAFVLPILQKLSE 66
Query: 91 ESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAAL 150
+ P LVL PTREL Q+ + L + + LK + M L
Sbjct: 67 D--PYGIFC---LVLTPTRELAYQIAEQFRVLGK----PLGLKDCIIVGGMDMVAQALEL 117
Query: 151 AGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYED---DLKALS 206
+ P +VIATPG + L + S +FS ++ LV+DEAD LL G D DL+A+
Sbjct: 118 SRKPHVVIATPGRLADHLRS----SNTFSIKKIRFLVMDEADRLLEQGCTDFTVDLEAIL 173
Query: 207 AVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSE 266
A +P Q LL SAT + + +L+ L + P+ V+ + + Q ++ E
Sbjct: 174 AAVPTRRQTLLFSATLTDTLKELQGLATNQPFFWEAQ--APVRTV---EQLDQRYLLVPE 228
Query: 267 RDKXXXXXXXXXXXXVQKK---ALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRL 323
+ K + + +IFTNT L + L KF + L++ + Q R
Sbjct: 229 KVKDAYLVHLIQNFQDEHEDWSIIIFTNTCKTCQILCMMLRKFNFPTVALHSMMKQKERF 288
Query: 324 HILEEFNAGLFDYLIATD 341
L +F + ++ LIATD
Sbjct: 289 AALAKFKSSIYRILIATD 306
Score = 100 (40.3 bits), Expect = 1.4e-32, Sum P(2) = 1.4e-32
Identities = 23/73 (31%), Positives = 40/73 (54%)
Query: 378 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIF----EEIKS 433
RG+D V VIN P Y+HR+GRT RA G +++LV+ ++ + E+IK
Sbjct: 310 RGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRQGQAITLVTQYDIHLVHAIEEQIKK 369
Query: 434 FVGDDENEDSNII 446
+ + E++ ++
Sbjct: 370 QLEELSVEEAKVL 382
>FB|FBgn0010220 [details] [associations]
symbol:Dbp45A "DEAD box protein 45A" species:7227 "Drosophila
melanogaster" [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISS;NAS] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000381 "regulation of
alternative mRNA splicing, via spliceosome" evidence=IMP]
[GO:0005634 "nucleus" evidence=IC] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 EMBL:AE013599
GO:GO:0005524 GO:GO:0005634 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 GO:GO:0000381
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 KO:K14778
GeneTree:ENSGT00670000098028 EMBL:L13612 EMBL:Z23266 EMBL:AY058728
PIR:S38329 RefSeq:NP_476927.1 UniGene:Dm.4231
ProteinModelPortal:Q07886 SMR:Q07886 PaxDb:Q07886
EnsemblMetazoa:FBtr0088564 GeneID:35917 KEGG:dme:Dmel_CG12759
CTD:35917 FlyBase:FBgn0010220 InParanoid:Q07886 OMA:CQLLSMT
OrthoDB:EOG431ZDJ PhylomeDB:Q07886 GenomeRNAi:35917 NextBio:795815
Bgee:Q07886 GermOnline:CG12759 Uniprot:Q07886
Length = 521
Score = 314 (115.6 bits), Expect = 1.9e-32, Sum P(2) = 1.9e-32
Identities = 109/315 (34%), Positives = 152/315 (48%)
Query: 31 LGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFN 90
LGL LV L K G++ T IQQ IP IL G+D + AKTGSGKTFA+ LP+L RL
Sbjct: 12 LGLRPWLVKQLTKLGLKGATPIQQKCIPAILAGQDCIGAAKTGSGKTFAFALPILERLSE 71
Query: 91 ESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQL-TSSMPASDLRAA 149
E P S A LVL PT EL Q+ SE + G V++ VV T M S
Sbjct: 72 E--PVSHFA---LVLTPTHELAYQI-SEQFLVAGQAMG-VRVCVVSGGTDQMVESQ---K 121
Query: 150 LAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVI 209
L P IV+A PG + L TG + SF D+LK LV+DEAD +L+ +++ L + +
Sbjct: 122 LMQRPHIVVAMPGRLADHL-TGC-DTFSF-DNLKYLVVDEADRMLNGDFDESLSIIERCL 178
Query: 210 PRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDK 269
P+ Q L SAT D +K+ + P E D + + Q ++ C++ D+
Sbjct: 179 PKTRQNLFFSATMK---DFIKESSIF-PIASDCFEWSQDSDVATVETLDQRYLLCADYDR 234
Query: 270 XXXXXXXXXXXXVQKK---ALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHIL 326
+ + +IFTNT L + L+ I + L+ + Q R+ L
Sbjct: 235 DMVLIEALRKYREENENANVMIFTNTKKYCQLLSMTLKNMEIDNVCLHGFMRQKERVAAL 294
Query: 327 EEFNAGLFDYLIATD 341
F + LIATD
Sbjct: 295 SRFKSNQIRTLIATD 309
Score = 105 (42.0 bits), Expect = 1.9e-32, Sum P(2) = 1.9e-32
Identities = 20/56 (35%), Positives = 34/56 (60%)
Query: 378 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVS-PDEMKIFEEIK 432
RG+D +V V+N +P+ Y+HR+GRT RA G S+S+ P ++++ I+
Sbjct: 313 RGLDIPSVELVMNHMLPRTPKEYIHRVGRTARAGRKGMSISIFRFPRDLELLAAIE 368
>DICTYBASE|DDB_G0270396 [details] [associations]
symbol:ddx49 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
dictyBase:DDB_G0270396 GO:GO:0005524 EMBL:AAFI02000005
GenomeReviews:CM000150_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 KO:K14778 OMA:FRNLCAI
RefSeq:XP_646762.1 HSSP:P60842 ProteinModelPortal:Q55BR9
PRIDE:Q55BR9 EnsemblProtists:DDB0234206 GeneID:8617735
KEGG:ddi:DDB_G0270396 ProtClustDB:CLSZ2846935 Uniprot:Q55BR9
Length = 508
Score = 297 (109.6 bits), Expect = 1.9e-32, Sum P(2) = 1.9e-32
Identities = 98/313 (31%), Positives = 149/313 (47%)
Query: 31 LGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFN 90
LGL LV + G + P+ IQ +IP IL+G+D++A AKTGSGKT ++ +P+L++L
Sbjct: 9 LGLTTWLVANCKQLGFKAPSNIQANTIPEILKGRDIIASAKTGSGKTASFAIPILNQLSE 68
Query: 91 ESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAAL 150
+ P A ++L PTREL Q+ + A+ V VV + L
Sbjct: 69 D--PYGVFA---VILTPTRELAVQIGEQFNAIG--APMNVNCSVV--IGGIDNVTQALIL 119
Query: 151 AGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIP 210
P I++ATPG + L+ G+ + F K LVLDEAD LL +E ++ ++ +P
Sbjct: 120 DKRPHIIVATPGRLASHLNNGLKIALKFC---KFLVLDEADRLLGEDFELEIASILEHLP 176
Query: 211 --RGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERD 268
Q LL SAT + ++ KL + L+ P+I E D V + ++ +D
Sbjct: 177 PPEKRQTLLFSATMTKNLTKLDSIALNKPFIF---EDNSKYDTVDTLKQEYIYMPAPTKD 233
Query: 269 KXXXXXXXXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEE 328
A++F N +K L K I S L++ L Q SRL L+
Sbjct: 234 CYLVYILKKHEGS---SAIVFVNNCYAVEAVKGMLNKLDIPSVSLHSFLDQKSRLAALKT 290
Query: 329 FNAGLFDYLIATD 341
F +G L+ATD
Sbjct: 291 FKSGKVKVLVATD 303
Score = 124 (48.7 bits), Expect = 1.9e-32, Sum P(2) = 1.9e-32
Identities = 24/85 (28%), Positives = 49/85 (57%)
Query: 352 DEGGHVDSRKSKKHPKAKLDSEFGVV-RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRA 410
D+ + + K+ K K K+ V RG+D +V VIN+++ ++ Y+HR+GRT R
Sbjct: 280 DQKSRLAALKTFKSGKVKVLVATDVASRGLDIPDVQIVINYKLSNSSKDYIHRVGRTARF 339
Query: 411 YNTGASVSLVSPDEMKIFEEIKSFV 435
+G ++S ++P ++ + + I+ +
Sbjct: 340 GRSGRAISFITPHDVSLIKGIEEII 364
>ASPGD|ASPL0000069536 [details] [associations]
symbol:AN7424 species:162425 "Emericella nidulans"
[GO:0000464 "endonucleolytic cleavage in ITS1 upstream of 5.8S rRNA
from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0030687 "preribosome, large subunit precursor"
evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0003723 EMBL:AACD01000129 EMBL:BN001304 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
eggNOG:COG0513 HOGENOM:HOG000268804 KO:K14811 RefSeq:XP_680693.1
GeneID:2869574 KEGG:ani:AN7424.2 OrthoDB:EOG42JS0S Uniprot:Q5AWA6
Length = 488
Score = 314 (115.6 bits), Expect = 2.1e-32, Sum P(2) = 2.1e-32
Identities = 91/301 (30%), Positives = 145/301 (48%)
Query: 45 GIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALV 104
G PT IQ A+ PL+ G+DV+ A+TGSGKT A+ LP L ++ + + + P A+V
Sbjct: 92 GFASPTAIQSATWPLLFAGRDVIGIAETGSGKTLAFGLPCLKKVLDLKTKQKSCRPLAVV 151
Query: 105 LVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCM 164
+ PTREL Q+Y +++ E +V ++V + + + R AL +V+ATPG +
Sbjct: 152 ISPTRELAMQIYDQLVKFAE----KVDIQVACIFGGVKKDEQREALKSAA-VVVATPGRL 206
Query: 165 PKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGC-QCLLMSATSS 223
+ G L +K LVLDEAD +L G+E D+K + + +P Q ++ +AT
Sbjct: 207 KDLQNDGSLDL----GRVKYLVLDEADRMLDKGFEQDIKDIISPMPVSKRQTVMFTATWP 262
Query: 224 SDVDKLKKLILHNPYILTLPEVGDVK-DEVIPKNVQQFW--ISCSERDKXXXXXXXXXXX 280
V L + +P +T+ GD D ++Q + E+++
Sbjct: 263 PIVRNLASTFMTSPVTVTIG--GDPSADPRANSRIKQVVEVVKPHEKEQRLVQILNRHQR 320
Query: 281 XVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIAT 340
K L F A R++ L G K A ++ +L Q R LE F +G L+AT
Sbjct: 321 GTPDKVLAFCLYKKEAMRVERLLRTKGFKVAGIHGDLSQQERFRSLEAFKSGAATVLVAT 380
Query: 341 D 341
D
Sbjct: 381 D 381
Score = 101 (40.6 bits), Expect = 2.1e-32, Sum P(2) = 2.1e-32
Identities = 20/42 (47%), Positives = 26/42 (61%)
Query: 378 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSL 419
RG+D +V V+N P YVHRIGRTGRA G +++L
Sbjct: 385 RGLDIPHVKLVVNVTFPLTVEDYVHRIGRTGRAGADGHAITL 426
>UNIPROTKB|Q0C4B9 [details] [associations]
symbol:HNE_0695 "Putative ATP-dependent RNA helicase RhlE"
species:228405 "Hyphomonas neptunium ATCC 15444" [GO:0006139
"nucleobase-containing compound metabolic process" evidence=ISS]
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:CP000158
GenomeReviews:CP000158_GR GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807
RefSeq:YP_759424.1 ProteinModelPortal:Q0C4B9 STRING:Q0C4B9
GeneID:4287361 KEGG:hne:HNE_0695 PATRIC:32214196 OMA:LPMITIL
BioCyc:HNEP228405:GI69-738-MONOMER Uniprot:Q0C4B9
Length = 536
Score = 301 (111.0 bits), Expect = 2.6e-32, Sum P(2) = 2.6e-32
Identities = 96/328 (29%), Positives = 153/328 (46%)
Query: 32 GLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNE 91
GL ++ A+ + G PT IQ+ +IP IL G DV A+TG+GKT A++LP++ RL +
Sbjct: 10 GLAENILKAVTESGYTIPTPIQREAIPHILMGGDVTGVAQTGTGKTAAFVLPMIQRL-ST 68
Query: 92 SSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAALA 151
++++ P L+L PTREL QV E ++L + L + + L
Sbjct: 69 GRARARM-PRCLILCPTRELAAQVAEN----FEKYGKYLKLTMALLIGGVSFKEQETLLQ 123
Query: 152 GPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPR 211
D++IATPG + G K ++ L++DEAD +L G+ D++ + A +P
Sbjct: 124 RGVDVLIATPGRLMDQFDRG----KLLMMGVETLIIDEADRMLDMGFIPDIEKICAKLPA 179
Query: 212 GCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERD-KX 270
Q LL SAT +D+ +L K +P + EV + + + QF + D K
Sbjct: 180 NRQTLLFSATFPTDIQRLAKTFQKDPKKI---EV--TRPAQTAETISQFVVKLPTNDGKA 234
Query: 271 XXXXXXXXXXXVQ-KKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEF 329
K ++F N + L K G +A ++ +LPQ+ R L+ F
Sbjct: 235 RRTALRRVIEATNVKNGIVFCNRKVEVDIVAASLTKHGHDAAPIHGDLPQSVRSETLQRF 294
Query: 330 NAGLFDYLIATDDTQTKEKDQSDEGGHV 357
G L+A+D + D D G HV
Sbjct: 295 RDGKLKLLVASD-VAARGLDIPDVG-HV 320
Score = 120 (47.3 bits), Expect = 2.6e-32, Sum P(2) = 2.6e-32
Identities = 27/64 (42%), Positives = 36/64 (56%)
Query: 378 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGD 437
RG+D +V V NF P YVHRIGRTGRA TG S ++V+P + K + + +
Sbjct: 310 RGLDIPDVGHVFNFGPPPKDEDYVHRIGRTGRAGRTGESYTVVTPADDKSWGFVVKMIKK 369
Query: 438 DENE 441
D E
Sbjct: 370 DVPE 373
>GENEDB_PFALCIPARUM|PFB0860c [details] [associations]
symbol:PFB0860c "RNA helicase, putative"
species:5833 "Plasmodium falciparum" [GO:0004004 "ATP-dependent RNA
helicase activity" evidence=ISS] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 EMBL:AE001362
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268802 HSSP:P10081
KO:K14777 PIR:C71604 RefSeq:XP_001349688.1
ProteinModelPortal:O96264 EnsemblProtists:PFB0860c:mRNA
GeneID:812770 KEGG:pfa:PFB0860c EuPathDB:PlasmoDB:PF3D7_0218400
OMA:KHRAKRV ProtClustDB:CLSZ2432676 Uniprot:O96264
Length = 562
Score = 311 (114.5 bits), Expect = 4.3e-32, Sum P(2) = 4.3e-32
Identities = 93/305 (30%), Positives = 150/305 (49%)
Query: 37 LVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKS 96
++ ++ + G +KPT IQ+ +P KD++ ++TGSGKT +++P+L L +
Sbjct: 167 ILESIKELGWKKPTEIQREILPHAFLKKDIIGLSETGSGKTACFIIPILQDL-----KVN 221
Query: 97 KLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDI 156
K + ALV+ PTRELC Q+ AL + + + + + LA P++
Sbjct: 222 KQSFYALVISPTRELCIQISQNFQAL----GMNLLINICTIYGGVDIVTQSLNLAKKPNV 277
Query: 157 VIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQC 215
+++TPG + L+ +K F+ +LK LV DEAD LLS +E + L ++P
Sbjct: 278 IVSTPGRILDHLNN----TKGFNLKNLKYLVFDEADKLLSQDFESSINKLLLILPPNRIT 333
Query: 216 LLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKXXXXXX 275
L SAT + +V KLKK L NP + EV + K + ++ + I + K
Sbjct: 334 FLFSATMTKNVAKLKKACLKNPVKV---EVSN-KYSTVSTLIETY-IFLPLKYKYTYLSS 388
Query: 276 XXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFD 335
+ +IFTNT A +L F G+KS L+ +L QN RL L F ++
Sbjct: 389 LCFHYQT-RNIIIFTNTCATAQKLNFFCRNLGLKSICLHGKLTQNQRLSSLNSFKVNKYN 447
Query: 336 YLIAT 340
LI+T
Sbjct: 448 ILIST 452
Score = 108 (43.1 bits), Expect = 4.3e-32, Sum P(2) = 4.3e-32
Identities = 37/139 (26%), Positives = 74/139 (53%)
Query: 350 QSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGR 409
Q+ ++S K K+ + ++ G RG+D +++ VINF++ + Y+HR+GRT R
Sbjct: 431 QNQRLSSLNSFKVNKY-NILISTQVGA-RGLDLQDIKIVINFDIC-SCKEYIHRVGRTAR 487
Query: 410 AYNTGASVSLVSPDEMKIFEEIKSFVGDDENEDSNIIAPFPLLAQNAVESLRYRAEDV-A 468
A +G S++ V+ +++ F I E + + I F L +N V L Y + + A
Sbjct: 488 AGRSGKSITFVTQYDVENFLAI-------EKQLNKKIDKFTDLDENDV--LLYHEQTIEA 538
Query: 469 KSVTKIAVRESRAQDLRNE 487
+++I ++E++ +N+
Sbjct: 539 LRLSEIEMKENQELYKKNK 557
>UNIPROTKB|O96264 [details] [associations]
symbol:PFB0860c "DEAD/DEAH box helicase, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
EMBL:AE001362 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268802 HSSP:P10081 KO:K14777 PIR:C71604
RefSeq:XP_001349688.1 ProteinModelPortal:O96264
EnsemblProtists:PFB0860c:mRNA GeneID:812770 KEGG:pfa:PFB0860c
EuPathDB:PlasmoDB:PF3D7_0218400 OMA:KHRAKRV ProtClustDB:CLSZ2432676
Uniprot:O96264
Length = 562
Score = 311 (114.5 bits), Expect = 4.3e-32, Sum P(2) = 4.3e-32
Identities = 93/305 (30%), Positives = 150/305 (49%)
Query: 37 LVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKS 96
++ ++ + G +KPT IQ+ +P KD++ ++TGSGKT +++P+L L +
Sbjct: 167 ILESIKELGWKKPTEIQREILPHAFLKKDIIGLSETGSGKTACFIIPILQDL-----KVN 221
Query: 97 KLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDI 156
K + ALV+ PTRELC Q+ AL + + + + + LA P++
Sbjct: 222 KQSFYALVISPTRELCIQISQNFQAL----GMNLLINICTIYGGVDIVTQSLNLAKKPNV 277
Query: 157 VIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQC 215
+++TPG + L+ +K F+ +LK LV DEAD LLS +E + L ++P
Sbjct: 278 IVSTPGRILDHLNN----TKGFNLKNLKYLVFDEADKLLSQDFESSINKLLLILPPNRIT 333
Query: 216 LLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKXXXXXX 275
L SAT + +V KLKK L NP + EV + K + ++ + I + K
Sbjct: 334 FLFSATMTKNVAKLKKACLKNPVKV---EVSN-KYSTVSTLIETY-IFLPLKYKYTYLSS 388
Query: 276 XXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFD 335
+ +IFTNT A +L F G+KS L+ +L QN RL L F ++
Sbjct: 389 LCFHYQT-RNIIIFTNTCATAQKLNFFCRNLGLKSICLHGKLTQNQRLSSLNSFKVNKYN 447
Query: 336 YLIAT 340
LI+T
Sbjct: 448 ILIST 452
Score = 108 (43.1 bits), Expect = 4.3e-32, Sum P(2) = 4.3e-32
Identities = 37/139 (26%), Positives = 74/139 (53%)
Query: 350 QSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGR 409
Q+ ++S K K+ + ++ G RG+D +++ VINF++ + Y+HR+GRT R
Sbjct: 431 QNQRLSSLNSFKVNKY-NILISTQVGA-RGLDLQDIKIVINFDIC-SCKEYIHRVGRTAR 487
Query: 410 AYNTGASVSLVSPDEMKIFEEIKSFVGDDENEDSNIIAPFPLLAQNAVESLRYRAEDV-A 468
A +G S++ V+ +++ F I E + + I F L +N V L Y + + A
Sbjct: 488 AGRSGKSITFVTQYDVENFLAI-------EKQLNKKIDKFTDLDENDV--LLYHEQTIEA 538
Query: 469 KSVTKIAVRESRAQDLRNE 487
+++I ++E++ +N+
Sbjct: 539 LRLSEIEMKENQELYKKNK 557
>UNIPROTKB|E1BGI6 [details] [associations]
symbol:DDX54 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0030331 "estrogen receptor binding" evidence=IEA]
[GO:0006396 "RNA processing" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IEA] [GO:0003714 "transcription corepressor activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012541 Pfam:PF00270 Pfam:PF00271
Pfam:PF08147 ProDom:PD024971 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003714 GO:GO:0005730
GO:GO:0003723 GO:GO:0006396 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 InterPro:IPR014014 PROSITE:PS51195
OMA:FYIPYRP GeneTree:ENSGT00550000075100 EMBL:DAAA02045421
IPI:IPI00690851 Ensembl:ENSBTAT00000029525 Uniprot:E1BGI6
Length = 877
Score = 304 (112.1 bits), Expect = 4.5e-32, Sum P(3) = 4.5e-32
Identities = 98/311 (31%), Positives = 145/311 (46%)
Query: 31 LGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFN 90
+GL + + KKG + PT IQ+ +IP+IL+GKDVVA A+TGSGKT +L+P+ RL
Sbjct: 101 MGLSYPVFKGIMKKGYKVPTPIQRKTIPMILDGKDVVAMARTGSGKTACFLIPMFERLKT 160
Query: 91 ESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAAL 150
S+ + AL+L PTREL Q EL K LK + D AAL
Sbjct: 161 HSA---QTGARALILSPTRELALQTMKFTK---ELGKF-TGLKTALILGGDKMEDQFAAL 213
Query: 151 AGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIP 210
PDI+IATPG + + V + S++ +V DEAD L G+ + L+ + +P
Sbjct: 214 HENPDIIIATPG---RLVHVAVEMNLKLQ-SVEYVVFDEADRLFEMGFAEQLQEIIGRLP 269
Query: 211 RGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKX 270
G Q +L SAT + + + L P ++ L DV ++ + F++ +
Sbjct: 270 GGHQTVLFSATLPKLLVEFARAGLTEPVLIRL----DVDSKLNEQLKTSFFLVREDAKAA 325
Query: 271 XXXXXXXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFN 330
Q + ++F T A L L G+ A + + L Q +R L F
Sbjct: 326 VLLHLLRNVVRPQDQTVVFVATKHHAEYLSELLATQGVSCAHIYSALDQTARKINLARFT 385
Query: 331 AGLFDYLIATD 341
G LI TD
Sbjct: 386 HGKCSALIVTD 396
Score = 118 (46.6 bits), Expect = 4.5e-32, Sum P(3) = 4.5e-32
Identities = 22/59 (37%), Positives = 35/59 (59%)
Query: 378 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVG 436
RG+D + VIN+ P ++HR+GR RA +G + SLV+PDE+ ++ F+G
Sbjct: 400 RGLDIPLLDNVINYSFPAKGKLFLHRVGRVARAGRSGTAYSLVAPDEVPYLLDLHLFLG 458
Score = 48 (22.0 bits), Expect = 4.5e-32, Sum P(3) = 4.5e-32
Identities = 15/50 (30%), Positives = 25/50 (50%)
Query: 556 RRQGPRRKFRKSDPLKSFSAEPTKRAGKGRMKREGRNGDDTGKHKKKKSL 605
RR+ + +F + LK SA +RA + + GR G + K K +K +
Sbjct: 829 RRRAQKMRFLQRGGLKQLSARNRRRAQELQQGAFGR-GAPSKKGKMRKRM 877
>UNIPROTKB|G3X7G8 [details] [associations]
symbol:DDX59 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005622 "intracellular" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GO:GO:0005622 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR007529 Pfam:PF04438 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00610000086076
CTD:83479 OMA:VTRPIID EMBL:DAAA02043967 EMBL:DAAA02043968
RefSeq:NP_001179318.1 UniGene:Bt.41740 Ensembl:ENSBTAT00000027398
GeneID:514901 KEGG:bta:514901 NextBio:20871562 Uniprot:G3X7G8
Length = 620
Score = 306 (112.8 bits), Expect = 4.8e-32, Sum P(2) = 4.8e-32
Identities = 96/303 (31%), Positives = 152/303 (50%)
Query: 41 LNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAP 100
L G + PT IQ IP+ L G+DV+A A TGSGKT A+LLP++ R ++S KS P
Sbjct: 219 LKASGYEVPTPIQMQMIPVGLLGRDVLASADTGSGKTAAFLLPVILRALSQS--KS---P 273
Query: 101 AALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIAT 160
+ LVL PTREL Q+ + EL G L+ L +PA R L ++IAT
Sbjct: 274 SGLVLTPTRELAIQIERQAK---ELMSGLPCLRTALLVGGLPAPPQRHRLRQRIQVIIAT 330
Query: 161 PGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMS 219
PG + L +++ +S S+KI+V+DEAD +L G++ + + +P CQ +L S
Sbjct: 331 PG---RLLD--IIKQRSVELGSIKIVVVDEADTMLKMGFQQQVLDVLEQLPHDCQTVLAS 385
Query: 220 ATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQ-QFWISCSERDKXXXXXXXXX 278
AT + V++L +L +P +T E ++ P Q W+ K
Sbjct: 386 ATIPASVEQLACQLLRDPVAITAGE----RNLPCPSVRQIVLWVE-EPAKKKKLFEILND 440
Query: 279 XXXVQKKALIFTNTIDMAFRLKLFLEKF-GIKSAILNAELPQNSRLHILEEFNAGLFDYL 337
+ L+F + A L ++K G+KS ++++ Q R +IL+ G +D +
Sbjct: 441 KKLFKPPVLVFVDCKLGADLLSEAVQKITGLKSTSVHSDKTQMERKNILKGLLEGDYDVV 500
Query: 338 IAT 340
++T
Sbjct: 501 VST 503
Score = 116 (45.9 bits), Expect = 4.8e-32, Sum P(2) = 4.8e-32
Identities = 22/58 (37%), Positives = 37/58 (63%)
Query: 375 GVV-RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEI 431
GV+ RG+D V V+NF+MP + YVH+IGR GR G +++ ++ + ++F +I
Sbjct: 504 GVLGRGLDLVGVKLVVNFDMPSSMDEYVHQIGRVGRLGQHGTAITFINNNSKRLFWDI 561
>FB|FBgn0035720 [details] [associations]
symbol:CG10077 species:7227 "Drosophila melanogaster"
[GO:0003724 "RNA helicase activity" evidence=ISS] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005875 "microtubule associated complex"
evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005875
EMBL:AE014296 GO:GO:0006200 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 GO:GO:0003724
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0016779 KO:K12823
GeneTree:ENSGT00660000095174 HSSP:P10081 UniGene:Dm.7301
GeneID:38756 KEGG:dme:Dmel_CG10077 FlyBase:FBgn0035720
ChiTaRS:CG10077 GenomeRNAi:38756 NextBio:810234 EMBL:AY102660
RefSeq:NP_648062.2 SMR:Q8MZI3 IntAct:Q8MZI3 MINT:MINT-863686
STRING:Q8MZI3 EnsemblMetazoa:FBtr0076940 EnsemblMetazoa:FBtr0333083
UCSC:CG10077-RA InParanoid:Q8MZI3 OMA:WRACAIH Uniprot:Q8MZI3
Length = 818
Score = 300 (110.7 bits), Expect = 6.4e-32, Sum P(2) = 6.4e-32
Identities = 91/307 (29%), Positives = 139/307 (45%)
Query: 37 LVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKS 96
+++ + K+G KPT IQ P+ + G+D+V A+TGSGKT AY+LP + + N+ +
Sbjct: 168 VMNEIRKQGFAKPTAIQAQGWPIAMSGRDLVGVAQTGSGKTLAYVLPAVVHINNQPRLER 227
Query: 97 KLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDI 156
P ALVL PTREL QQ+ IE ++ + P L +I
Sbjct: 228 GDGPIALVLAPTRELAQQIQQ---VAIEF-GSNTHVRNTCIFGGAPKGQQARDLERGVEI 283
Query: 157 VIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCL 216
VIATPG + L G K + LVLDEAD +L G+E ++ + I Q L
Sbjct: 284 VIATPGRLIDFLERGTTSLKRCT----YLVLDEADRMLDMGFEPQIRKIMQQIRPDRQVL 339
Query: 217 LMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKXXXXXXX 276
+ SAT +V +L + L+N YI +G + N+ Q C E +K
Sbjct: 340 MWSATWPKEVRQLAEEFLNN-YIQV--NIGSLSLSA-NHNILQIVDVCDENEKLMKLIKL 395
Query: 277 XXXXXVQK--KALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLF 334
+ K +IF T + + + G ++ ++ + Q R +L F G
Sbjct: 396 LTDISAENETKTIIFVETKKRVDEITRNISRQGWRACAIHGDKSQQERDFVLSSFRNGRH 455
Query: 335 DYLIATD 341
L+ATD
Sbjct: 456 SILVATD 462
Score = 127 (49.8 bits), Expect = 6.4e-32, Sum P(2) = 6.4e-32
Identities = 28/73 (38%), Positives = 44/73 (60%)
Query: 347 EKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGR 406
+K Q + + S ++ +H + L + RG+D +V VIN++ P N+ YVHRIGR
Sbjct: 437 DKSQQERDFVLSSFRNGRH--SILVATDVAARGLDVDDVKFVINYDYPSNSEDYVHRIGR 494
Query: 407 TGRAYNTGASVSL 419
TGR+ NTG + +L
Sbjct: 495 TGRSNNTGTAYTL 507
>MGI|MGI:1919240 [details] [associations]
symbol:Ddx54 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 54"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003714 "transcription corepressor activity" evidence=ISO]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=ISO] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005102 "receptor binding"
evidence=ISO] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0006396 "RNA processing" evidence=ISO]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0016070 "RNA metabolic process" evidence=ISO] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0016818 "hydrolase activity,
acting on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0030331 "estrogen receptor binding" evidence=ISO]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012541 Pfam:PF00270 Pfam:PF00271 Pfam:PF08147
ProDom:PD024971 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
MGI:MGI:1919240 GO:GO:0005524 GO:GO:0003714 GO:GO:0005730
GO:GO:0006355 GO:GO:0006351 GO:GO:0003723 GO:GO:0006396
GO:GO:0030331 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K14808 HOGENOM:HOG000246455 OMA:FYIPYRP
GeneTree:ENSGT00550000075100 CTD:79039 HOVERGEN:HBG051333
EMBL:AF319547 EMBL:BC043699 IPI:IPI00875042 RefSeq:NP_082317.1
UniGene:Mm.24495 ProteinModelPortal:Q8K4L0 SMR:Q8K4L0 STRING:Q8K4L0
PhosphoSite:Q8K4L0 PaxDb:Q8K4L0 PRIDE:Q8K4L0
Ensembl:ENSMUST00000031598 GeneID:71990 KEGG:mmu:71990
UCSC:uc008zhq.1 NextBio:335150 Bgee:Q8K4L0 CleanEx:MM_DDX54
Genevestigator:Q8K4L0 Uniprot:Q8K4L0
Length = 874
Score = 293 (108.2 bits), Expect = 8.3e-32, Sum P(3) = 8.3e-32
Identities = 100/312 (32%), Positives = 147/312 (47%)
Query: 31 LGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFN 90
+GL + + KKG + PT IQ+ +IP+IL+GKDVVA A+TGSGKT +LLP+ RL
Sbjct: 100 MGLSYPVFKGIMKKGYKVPTPIQRKTIPVILDGKDVVAMARTGSGKTACFLLPMFERLKA 159
Query: 91 ESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAAL 150
S+ + AL+L PTREL Q EL K LK + D AAL
Sbjct: 160 RSA---QTGARALILSPTRELALQTMKFTK---ELGKF-TGLKTALILGGDKMEDQFAAL 212
Query: 151 AGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIP 210
PDI+IATPG + + V + S++ +V DEAD L G+ + L+ + +P
Sbjct: 213 HENPDIIIATPG---RLVHVAVEMNLKLQ-SVEYVVFDEADRLFEMGFAEQLQEIIGRLP 268
Query: 211 RGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKX 270
G Q +L SAT + + + L P ++ L DV D + + ++ ++ E K
Sbjct: 269 GGHQTVLFSATLPKLLVEFARAGLTEPVLIRL----DV-DSKLNEQLKTSFLLVREDTKA 323
Query: 271 XXXXXXXXXXX-VQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEF 329
Q + ++F T A L L G+ A + + L Q +R L +F
Sbjct: 324 AVLLYLLQNVVRPQDQTVVFVATKHHAEYLTELLMGQGVSCAHIYSALDQTARKINLAKF 383
Query: 330 NAGLFDYLIATD 341
LI TD
Sbjct: 384 THNKCSTLIVTD 395
Score = 118 (46.6 bits), Expect = 8.3e-32, Sum P(3) = 8.3e-32
Identities = 22/59 (37%), Positives = 35/59 (59%)
Query: 378 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVG 436
RG+D + VIN+ P ++HR+GR RA +G + SLV+PDE+ ++ F+G
Sbjct: 399 RGLDIPLLDNVINYSFPAKGKLFLHRVGRVARAGRSGTAYSLVAPDEVPYLLDLHLFLG 457
Score = 58 (25.5 bits), Expect = 8.3e-32, Sum P(3) = 8.3e-32
Identities = 17/50 (34%), Positives = 26/50 (52%)
Query: 556 RRQGPRRKFRKSDPLKSFSAEPTKRAGKGRMKREGRNGDDTGKHKKKKSL 605
RRQ +++F + LK SA +RA + R GR G + K K +K +
Sbjct: 826 RRQAQKQRFLQRGGLKQLSARNRRRAQELRQGAFGR-GAPSRKGKMRKRM 874
>UNIPROTKB|Q5ZLN8 [details] [associations]
symbol:DDX55 "ATP-dependent RNA helicase DDX55"
species:9031 "Gallus gallus" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
InterPro:IPR025313 Pfam:PF13959 HSSP:P26196 CTD:57696
HOGENOM:HOG000268803 HOVERGEN:HBG107796 KO:K14809 OrthoDB:EOG4WH8KN
EMBL:AJ719696 IPI:IPI00590534 RefSeq:NP_001006185.1
UniGene:Gga.42731 ProteinModelPortal:Q5ZLN8 STRING:Q5ZLN8
PRIDE:Q5ZLN8 GeneID:416820 KEGG:gga:416820 InParanoid:Q5ZLN8
NextBio:20820225 Uniprot:Q5ZLN8
Length = 591
Score = 308 (113.5 bits), Expect = 8.7e-32, Sum P(2) = 8.7e-32
Identities = 92/312 (29%), Positives = 146/312 (46%)
Query: 37 LVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKS 96
++ AL G + T +Q A+IPL + KDV A A TGSGKT A+++P+L L
Sbjct: 20 VLRALQDLGFDRMTPVQSATIPLFMSNKDVAAEAVTGSGKTLAFVIPILEILLRREEKLK 79
Query: 97 KLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSM-PASDLRAALAGPPD 155
K+ A+++ PTREL Q+ EV L K + + L P D+ +
Sbjct: 80 KMQVGAIIITPTRELAIQI-DEV--LTHFTKHFPKFSQILLIGGRNPMEDVEKFKEHGGN 136
Query: 156 IVIATPGCMPKCLSTGV--LQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGC 213
I++ATPG + L S SL +LVLDEAD LL G+E L A+ A +P+
Sbjct: 137 IIVATPGRLEDLFRRKADGLDLASCVKSLDVLVLDEADRLLDMGFESSLNAILAFLPKQR 196
Query: 214 QCLLMSATSSSDVDKLKKLILHNPYILTLPEVG--DVKDEVIPKNVQQFWISCSERDKXX 271
+ L SAT + +V+ L + L NP +++ E G + P ++ +++ C + D+
Sbjct: 197 RTGLFSATQTQEVENLVRAGLRNPVRISVKEKGVAATNTQKTPTRLENYYMIC-KADEKF 255
Query: 272 XXXXXXXXXXVQKKALIFTNTIDMAFRLKLFLEKF--GIKSAILNAELPQNSRLHILEEF 329
Q+K L+F +T LE +K ++ ++ ++ R I EF
Sbjct: 256 NQLVHFLRQHKQEKHLVFFSTCACVEYYGKALESLIKQVKIMCIHGKM-KHKRNKIFTEF 314
Query: 330 NAGLFDYLIATD 341
L+ TD
Sbjct: 315 RRLAGGILVCTD 326
Score = 110 (43.8 bits), Expect = 8.7e-32, Sum P(2) = 8.7e-32
Identities = 20/49 (40%), Positives = 31/49 (63%)
Query: 376 VVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDE 424
+ RGID VH V+ ++ P +A+ +VHR GRT R N G+++ + P E
Sbjct: 328 MARGIDIPEVHWVLQYDPPSSASAFVHRCGRTARIGNAGSALVFLLPME 376
>ZFIN|ZDB-GENE-990415-272 [details] [associations]
symbol:vasa "vasa homolog" species:7955 "Danio
rerio" [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0043186 "P granule" evidence=IDA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0008406 "gonad development" evidence=IEP]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-990415-272 GO:GO:0005524 GO:GO:0008406
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043186
HSSP:Q58083 HOGENOM:HOG000268804 HOVERGEN:HBG015893 KO:K13982
EMBL:AB005147 IPI:IPI00495861 RefSeq:NP_571132.1 UniGene:Dr.559
ProteinModelPortal:O42107 SMR:O42107 STRING:O42107 PRIDE:O42107
GeneID:30263 KEGG:dre:30263 CTD:30263 InParanoid:O42107
NextBio:20806710 ArrayExpress:O42107 Bgee:O42107 Uniprot:O42107
Length = 716
Score = 287 (106.1 bits), Expect = 1.0e-31, Sum P(2) = 1.0e-31
Identities = 99/322 (30%), Positives = 153/322 (47%)
Query: 32 GLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNE 91
GL L ++K G KPT +Q+ IP+I G+D++A A+TGSGKT A+LLP+L R +
Sbjct: 283 GLCDSLSKNVSKSGYVKPTPVQKHGIPIISAGRDLMACAQTGSGKTAAFLLPILQRFMTD 342
Query: 92 SSPKSKLA----PAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLR 147
SK + P A+++ PTREL Q+Y E + G VV +R
Sbjct: 343 GVAASKFSEIQEPEAIIVAPTRELINQIYLEAR---KFAYGTCVRPVVVYGGINTGYTIR 399
Query: 148 AALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSA 207
L G +++ ATPG + + G K ++ LVLDEAD +L G+E +++ L A
Sbjct: 400 EVLKGC-NVLCATPGRLHDLIGRG----KIGLSKVRYLVLDEADRMLDMGFEPEMRKLVA 454
Query: 208 V--IP--RGCQCLLMSATSSSDVDKLKKLILHNPYI-LTLPEVG----DVKDEVIPKNVQ 258
+P Q L+ SAT D+ ++ L YI L + VG DV+ V+ V
Sbjct: 455 SPGMPSKEERQTLMFSATYPEDIQRMAADFLKVDYIFLAVGVVGGACSDVEQTVV--QVD 512
Query: 259 QFWISCSERDKXXXXXXXXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELP 318
Q+ S+RD+ ++ ++F T A + FL + I + ++ +
Sbjct: 513 QY----SKRDQLLELLRATG----NERTMVFVETKRSADFIATFLCQEKISTTSIHGDRE 564
Query: 319 QNSRLHILEEFNAGLFDYLIAT 340
Q R L +F G L+AT
Sbjct: 565 QREREKALSDFRLGHCPVLVAT 586
Score = 137 (53.3 bits), Expect = 1.0e-31, Sum P(2) = 1.0e-31
Identities = 25/46 (54%), Positives = 33/46 (71%)
Query: 378 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPD 423
RG+D + V V+NF+MP + YVHRIGRTGR NTG +VS +P+
Sbjct: 591 RGLDIEQVQHVVNFDMPSSIDEYVHRIGRTGRCGNTGRAVSFFNPE 636
>TIGR_CMR|GSU_0189 [details] [associations]
symbol:GSU_0189 "ATP-dependent RNA helicase DbpA"
species:243231 "Geobacter sulfurreducens PCA" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] [GO:0042254 "ribosome
biogenesis" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
EMBL:AE017180 GenomeReviews:AE017180_GR InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268809 KO:K05591 ProtClustDB:PRK11776
InterPro:IPR005580 Pfam:PF03880 RefSeq:NP_951250.1
ProteinModelPortal:Q74GQ7 GeneID:2687824 KEGG:gsu:GSU0189
PATRIC:22023124 OMA:VAIASHC BioCyc:GSUL243231:GH27-128-MONOMER
Uniprot:Q74GQ7
Length = 460
Score = 276 (102.2 bits), Expect = 1.2e-31, Sum P(2) = 1.2e-31
Identities = 81/215 (37%), Positives = 109/215 (50%)
Query: 31 LGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFN 90
L L ++ L G + T IQ S+PLIL GKDV+ARAKTGSGKT A+ + LL RL
Sbjct: 9 LRLKAPMLRNLASLGYAEMTPIQAHSLPLILAGKDVIARAKTGSGKTAAFGIGLLSRLDA 68
Query: 91 ESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAAL 150
S ALVL PTREL QV E+ L +K++ + +P +L
Sbjct: 69 LS-----FRVQALVLCPTRELADQVGKELRRLARFTDN---IKILTICGGVPFGPQLGSL 120
Query: 151 AGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIP 210
+VI TPG + L G L + L+ LVLDEAD +L G++DD+ AL A P
Sbjct: 121 EHGAHVVIGTPGRLLDHLRRGSLDLSA----LRTLVLDEADRMLDMGFQDDISALIAAAP 176
Query: 211 RGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEV 245
Q LL SAT + + + P +++ EV
Sbjct: 177 PKRQTLLFSATYPDSIAAMSAGVQREPVEVSVDEV 211
Score = 186 (70.5 bits), Expect = 5.0e-21, Sum P(2) = 5.0e-21
Identities = 71/242 (29%), Positives = 105/242 (43%)
Query: 102 ALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATP 161
ALVL PTREL QV E+ L +K++ + +P +L +VI TP
Sbjct: 75 ALVLCPTRELADQVGKELRRLARFTDN---IKILTICGGVPFGPQLGSLEHGAHVVIGTP 131
Query: 162 GCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSAT 221
G + L G L + L+ LVLDEAD +L G++DD+ AL A P Q LL SAT
Sbjct: 132 GRLLDHLRRGSLDLSA----LRTLVLDEADRMLDMGFQDDISALIAAAPPKRQTLLFSAT 187
Query: 222 SSSDVDKLKKLILHNPYILTLPEV-GDVKDEVIPKNVQQFW-ISCSERDKXXXXXXXXXX 279
+ + + P +++ EV G+ E Q F+ + +R +
Sbjct: 188 YPDSIAAMSAGVQREPVEVSVDEVHGEGAIE------QVFYEVDSGQRIEAVERILGHYR 241
Query: 280 XXVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIA 339
+ ALIF NT + L G + ++ +L Q R +L F L+A
Sbjct: 242 ---PESALIFCNTKLECQEVANALAVRGYAALAIHGDLDQRERDRVLVRFANRSASVLVA 298
Query: 340 TD 341
TD
Sbjct: 299 TD 300
Score = 137 (53.3 bits), Expect = 1.2e-31, Sum P(2) = 1.2e-31
Identities = 30/72 (41%), Positives = 42/72 (58%)
Query: 378 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGD 437
RG+D K + VIN+E+ +N + HRIGRTGRA G +VSLV+P E ++ I G
Sbjct: 304 RGLDIKELSAVINYELTRNPEVHTHRIGRTGRAGERGLAVSLVTPRESRLIAAIADVPGS 363
Query: 438 D-ENEDSNIIAP 448
D + +AP
Sbjct: 364 IIARGDLSTLAP 375
Score = 40 (19.1 bits), Expect = 1.7e-21, Sum P(2) = 1.7e-21
Identities = 7/15 (46%), Positives = 11/15 (73%)
Query: 310 SAILNAELPQNSRLH 324
SA++N EL +N +H
Sbjct: 312 SAVINYELTRNPEVH 326
>UNIPROTKB|F1P8J6 [details] [associations]
symbol:DDX55 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313
Pfam:PF13959 CTD:57696 KO:K14809 GeneTree:ENSGT00550000074969
EMBL:AAEX03014637 RefSeq:XP_543371.2 Ensembl:ENSCAFT00000011945
GeneID:486246 KEGG:cfa:486246 Uniprot:F1P8J6
Length = 599
Score = 308 (113.5 bits), Expect = 1.5e-31, Sum P(3) = 1.5e-31
Identities = 93/313 (29%), Positives = 150/313 (47%)
Query: 36 RLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPK 95
+++ AL + G T +Q A+IPL ++ KDV A A TGSGKT A+++P+L L
Sbjct: 19 QVLGALGQLGFPHMTPVQSATIPLFMKNKDVAAEAVTGSGKTLAFVIPILEILLRREEKL 78
Query: 96 SKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQL-KVVQLTSSMPASDLRAALAGPP 154
K A+++ PTREL QV EV+A K Q +++ + PA D+
Sbjct: 79 KKNQVGAIIITPTRELAIQV-DEVLA--HFTKSFPQFSQILWIGGRNPADDVSRFKEQGG 135
Query: 155 DIVIATPGCMPKCLSTGV--LQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRG 212
+I++ATPG + V L S SL++LVLDEAD LL G+E + + +P+
Sbjct: 136 NIIVATPGRLEDMFRRKVEGLDLASCVKSLEVLVLDEADRLLDMGFEASINTILEFLPKQ 195
Query: 213 CQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEV--IPKNVQQFWISCSERDKX 270
+ L SAT + +V+ L + L NP +++ E G P ++ +++ C + D+
Sbjct: 196 RRTGLFSATQTQEVESLVRAGLRNPVRISVKEKGVAASSTQKTPSRLENYYMVC-KADEK 254
Query: 271 XXXXXXXXXXXVQKKALIFTNTIDMAFRLKLFLEKF--GIKSAILNAELPQNSRLHILEE 328
Q+K LIF +T LE +K ++ ++ ++ R I E
Sbjct: 255 FNQLVHFLRNHKQEKHLIFFSTCACVEYYGKALEALVKSVKIMCIHGKM-KHKRNKIFME 313
Query: 329 FNAGLFDYLIATD 341
F L+ TD
Sbjct: 314 FRKLQSGILVCTD 326
Score = 96 (38.9 bits), Expect = 1.5e-31, Sum P(3) = 1.5e-31
Identities = 18/49 (36%), Positives = 31/49 (63%)
Query: 376 VVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDE 424
+ RGID V+ V+ ++ P +A+ +VHR GRT R + G+++ + P E
Sbjct: 328 MARGIDIPEVNWVLQYDPPSSASAFVHRCGRTARIGHGGSALVFLLPME 376
Score = 49 (22.3 bits), Expect = 1.5e-31, Sum P(3) = 1.5e-31
Identities = 22/77 (28%), Positives = 35/77 (45%)
Query: 524 RDVPDYL-LDAKTQEACKMVKLARAAMGNKNSSRRQGPRRKF--RKSDPLKSFSAEPTKR 580
R PD++ D T K+ R K R++ +R+ RK+ K++S + K+
Sbjct: 469 RQFPDFVPADVDTNNIPFKDKI-REKQRQKLLERQRKEKRENEGRKNIKNKAWSKQKAKK 527
Query: 581 AGKGRM--KREGRNGDD 595
K RM KR+ G D
Sbjct: 528 EKKKRMNEKRKREEGSD 544
>UNIPROTKB|F1NJA0 [details] [associations]
symbol:DDX55 "ATP-dependent RNA helicase DDX55"
species:9031 "Gallus gallus" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313
Pfam:PF13959 GeneTree:ENSGT00550000074969 IPI:IPI00590534
OMA:CACVEYW EMBL:AADN02034882 Ensembl:ENSGALT00000005224
Uniprot:F1NJA0
Length = 591
Score = 306 (112.8 bits), Expect = 1.5e-31, Sum P(2) = 1.5e-31
Identities = 92/309 (29%), Positives = 144/309 (46%)
Query: 40 ALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLA 99
AL G + T +Q A+IPL + KDV A A TGSGKT A+++P+L L K+
Sbjct: 23 ALQDLGFDRMTPVQSATIPLFMSNKDVAAEAVTGSGKTLAFVIPILEILLRREEKLKKMQ 82
Query: 100 PAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSM-PASDLRAALAGPPDIVI 158
A+++ PTREL Q+ EV L K + + L P D+ +I++
Sbjct: 83 VGAIIITPTRELAIQI-DEV--LTHFTKHFPKFSQILLIGGRNPMEDVEKFKEHGGNIIV 139
Query: 159 ATPGCMPKCLSTGV--LQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCL 216
ATPG + L S SL +LVLDEAD LL G+E L A+ A +P+ +
Sbjct: 140 ATPGRLEDLFRRKADGLDLASCVKSLDVLVLDEADRLLDMGFESSLNAILAFLPKQRRTG 199
Query: 217 LMSATSSSDVDKLKKLILHNPYILTLPEVG--DVKDEVIPKNVQQFWISCSERDKXXXXX 274
L SAT + +V+ L + L NP +++ E G + P ++ +++ C + D+
Sbjct: 200 LFSATQTQEVENLVRAGLRNPVRISVKEKGVAATNTQKTPTRLENYYMIC-KADEKFNQL 258
Query: 275 XXXXXXXVQKKALIFTNTIDMAFRLKLFLEKF--GIKSAILNAELPQNSRLHILEEFNAG 332
Q+K L+F +T LE +K ++ ++ ++ R I EF
Sbjct: 259 VHFLRQHKQEKHLVFFSTCACVEYYGKALESLIKQVKIMCIHGKM-KHKRNKIFTEFRRL 317
Query: 333 LFDYLIATD 341
L+ TD
Sbjct: 318 AGGILVCTD 326
Score = 110 (43.8 bits), Expect = 1.5e-31, Sum P(2) = 1.5e-31
Identities = 20/49 (40%), Positives = 31/49 (63%)
Query: 376 VVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDE 424
+ RGID VH V+ ++ P +A+ +VHR GRT R N G+++ + P E
Sbjct: 328 MARGIDIPEVHWVLQYDPPSSASAFVHRCGRTARIGNAGSALVFLLPME 376
>WB|WBGene00018776 [details] [associations]
symbol:F53H1.1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0040010 "positive regulation of growth rate"
evidence=IMP] [GO:0000003 "reproduction" evidence=IMP] [GO:0002009
"morphogenesis of an epithelium" evidence=IMP] [GO:0040035
"hermaphrodite genitalia development" evidence=IMP] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0006898 "receptor-mediated endocytosis" evidence=IMP]
[GO:0040018 "positive regulation of multicellular organism growth"
evidence=IMP] [GO:0040011 "locomotion" evidence=IMP] [GO:0040007
"growth" evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0009792
GO:GO:0002009 GO:GO:0006898 GO:GO:0040007 GO:GO:0040010
GO:GO:0002119 GO:GO:0040011 GO:GO:0040018 GO:GO:0003676
GO:GO:0040035 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HSSP:P10081 GeneTree:ENSGT00610000086076 KO:K12811
HOGENOM:HOG000007229 OMA:IEEENKF EMBL:FO081458
RefSeq:NP_001033411.1 ProteinModelPortal:Q965K2 SMR:Q965K2
PaxDb:Q965K2 PRIDE:Q965K2 EnsemblMetazoa:F53H1.1 GeneID:176943
KEGG:cel:CELE_F53H1.1 UCSC:F53H1.1 CTD:176943 WormBase:F53H1.1
InParanoid:Q965K2 NextBio:894678 ArrayExpress:Q965K2 Uniprot:Q965K2
Length = 970
Score = 306 (112.8 bits), Expect = 1.7e-31, Sum P(2) = 1.7e-31
Identities = 91/311 (29%), Positives = 151/311 (48%)
Query: 32 GLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNE 91
G++L++++ L K KPT IQ +IP I+ G+DV+ AKTGSGKT A+LLP+ + ++
Sbjct: 310 GVNLKMMNVLKKFEYSKPTSIQAQAIPSIMSGRDVIGIAKTGSGKTLAFLLPMFRHILDQ 369
Query: 92 SSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAALA 151
+ P A++L PTREL Q Y E + + LKV + S+ A L
Sbjct: 370 PELEEGDGPIAVILAPTRELAMQTYKEANKFAK----PLGLKVACTYGGVGISEQIADLK 425
Query: 152 GPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDL-KALSAVIP 210
+IV+ TPG M L+ + + + LVLDEAD + G+E + K ++ + P
Sbjct: 426 RGAEIVVCTPGRMIDVLAANSGKVTNLR-RVTYLVLDEADRMFDKGFEPQIMKVVNNIRP 484
Query: 211 RGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKX 270
Q +L SAT ++ L + +L P + VG V+ ++ Q + C+E K
Sbjct: 485 DK-QTVLFSATFPRHMEALARKVLDKPVEIL---VGG--KSVVCSDITQNAVICAEHQKF 538
Query: 271 XXXXXXXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGIKS-AILNAELPQNSRLHILEEF 329
+ +++F + + A + L + G S A L+ + Q+ R + +F
Sbjct: 539 LKLLELLGMYYEEGSSIVFVDKQEKADDIVDQLMRTGYNSVAPLHGGIDQHDRDSSIADF 598
Query: 330 NAGLFDYLIAT 340
G+ L+AT
Sbjct: 599 KTGVIKVLVAT 609
Score = 119 (46.9 bits), Expect = 1.7e-31, Sum P(2) = 1.7e-31
Identities = 24/55 (43%), Positives = 35/55 (63%)
Query: 378 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEM-KIFEEI 431
RG+D KN+ V+N++ P + YVHR+GRTGRA G + + V P+ K+ EI
Sbjct: 614 RGLDVKNLILVVNYDCPNHYEDYVHRVGRTGRAGRKGYAYTFVLPEHQEKMAGEI 668
>UNIPROTKB|P0A9P6 [details] [associations]
symbol:deaD "DeaD, DEAD-box RNA helicase" species:83333
"Escherichia coli K-12" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0030684 "preribosome" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0000027 "ribosomal large
subunit assembly" evidence=IMP] [GO:0004004 "ATP-dependent RNA
helicase activity" evidence=IDA] [GO:0006401 "RNA catabolic
process" evidence=IGI] [GO:0003724 "RNA helicase activity"
evidence=IDA] [GO:0070417 "cellular response to cold"
evidence=IEP;IMP] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR021046 Pfam:PF00270 Pfam:PF00271 Pfam:PF12343
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR EMBL:U18997 GO:GO:0003723 GO:GO:0006401
GO:GO:0070417 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 GO:GO:0000027 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268810 KO:K05592 InterPro:IPR005580
Pfam:PF03880 EMBL:M63288 EMBL:U03750 PIR:F65106 RefSeq:NP_417631.2
RefSeq:YP_491349.1 ProteinModelPortal:P0A9P6 SMR:P0A9P6
DIP:DIP-35752N IntAct:P0A9P6 MINT:MINT-1219396 SWISS-2DPAGE:P0A9P6
PaxDb:P0A9P6 PRIDE:P0A9P6 EnsemblBacteria:EBESCT00000000679
EnsemblBacteria:EBESCT00000014242 GeneID:12933435 GeneID:947674
KEGG:ecj:Y75_p3084 KEGG:eco:b3162 PATRIC:32121742 EchoBASE:EB0211
EcoGene:EG10215 OMA:ILFMTPR ProtClustDB:PRK11634
BioCyc:EcoCyc:EG10215-MONOMER BioCyc:ECOL316407:JW5531-MONOMER
Genevestigator:P0A9P6 GO:GO:0030684 Uniprot:P0A9P6
Length = 629
Score = 297 (109.6 bits), Expect = 1.9e-31, Sum P(3) = 1.9e-31
Identities = 84/208 (40%), Positives = 110/208 (52%)
Query: 31 LGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFN 90
LGL ++ ALN G +KP+ IQ IP +L G+DV+ A+TGSGKT A+ LPLL L
Sbjct: 11 LGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQNL-- 68
Query: 91 ESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPAS-DLRAA 149
P+ K AP LVL PTREL QV +E M + K + VV L LRA
Sbjct: 69 --DPELK-APQILVLAPTRELAVQV-AEAMT--DFSKHMRGVNVVALYGGQRYDVQLRAL 122
Query: 150 LAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVI 209
GP IV+ TPG + L G L S LVLDEAD +L G+ +D++ + A I
Sbjct: 123 RQGP-QIVVGTPGRLLDHLKRGTLDLSKLSG----LVLDEADEMLRMGFIEDVETIMAQI 177
Query: 210 PRGCQCLLMSATSSSDVDKLKKLILHNP 237
P G Q L SAT + ++ + + P
Sbjct: 178 PEGHQTALFSATMPEAIRRITRRFMKEP 205
Score = 232 (86.7 bits), Expect = 9.8e-24, Sum P(3) = 9.8e-24
Identities = 80/255 (31%), Positives = 109/255 (42%)
Query: 88 LFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPAS-DL 146
L P+ K AP LVL PTREL QV +E M + K + VV L L
Sbjct: 64 LLQNLDPELK-APQILVLAPTRELAVQV-AEAMT--DFSKHMRGVNVVALYGGQRYDVQL 119
Query: 147 RAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALS 206
RA GP IV+ TPG + L G L S LVLDEAD +L G+ +D++ +
Sbjct: 120 RALRQGP-QIVVGTPGRLLDHLKRGTLDLSKLSG----LVLDEADEMLRMGFIEDVETIM 174
Query: 207 AVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSE 266
A IP G Q L SAT + ++ + + P + + + ++ Q +W
Sbjct: 175 AQIPEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDIS----QSYWTVWGM 230
Query: 267 RDKXXXXXXXXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHIL 326
R A+IF T + + LE+ G SA LN ++ Q R L
Sbjct: 231 RKNEALVRFLEAEDF--DAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTL 288
Query: 327 EEFNAGLFDYLIATD 341
E G D LIATD
Sbjct: 289 ERLKDGRLDILIATD 303
Score = 121 (47.7 bits), Expect = 1.9e-31, Sum P(3) = 1.9e-31
Identities = 21/55 (38%), Positives = 35/55 (63%)
Query: 378 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIK 432
RG+D + + V+N+++P ++ YVHRIGRTGRA G ++ V E ++ I+
Sbjct: 307 RGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIE 361
Score = 38 (18.4 bits), Expect = 1.9e-31, Sum P(3) = 1.9e-31
Identities = 17/54 (31%), Positives = 26/54 (48%)
Query: 557 RQGPRRKF--RKSDPLKSFSAEPTKRA-GKGRM----KREGR---NGDDTGKHK 600
R+G R F + + ++FS E + G GR +REGR D TG+ +
Sbjct: 571 RRGGGRGFGGERREGGRNFSGERREGGRGDGRRFSGERREGRAPRRDDSTGRRR 624
>ZFIN|ZDB-GENE-050208-665 [details] [associations]
symbol:ddx59 "DEAD (Asp-Glu-Ala-Asp) box
polypeptide 59" species:7955 "Danio rerio" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-050208-665 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR007529
Pfam:PF04438 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00610000086076 OMA:VTRPIID EMBL:BX649292
IPI:IPI00786758 Ensembl:ENSDART00000105600 Bgee:F1R8P9
Uniprot:F1R8P9
Length = 584
Score = 287 (106.1 bits), Expect = 2.0e-31, Sum P(2) = 2.0e-31
Identities = 88/302 (29%), Positives = 145/302 (48%)
Query: 41 LNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAP 100
L G + PT +Q +P+ L G+DV+A A TGSGKT A+LLP++ R +S S P
Sbjct: 185 LKAAGYEAPTPVQMQMVPVGLTGRDVIATADTGSGKTVAFLLPVVMRAL-QSESASPSCP 243
Query: 101 AALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIAT 160
A L+L PTREL Q+ + EL +G ++ L MP L IVI T
Sbjct: 244 ACLILTPTRELAIQIEEQAK---ELMRGLPNMRTALLVGGMPLPPQLHRLKHNIKIVIGT 300
Query: 161 PGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSA 220
PG + + L +Q D ++ +V+DEAD +L G++ + + +P Q LL SA
Sbjct: 301 PGRLLEILKQKAVQL----DHVRTVVVDEADTMLKMGFQQQVLDILEQVPEDHQTLLTSA 356
Query: 221 TSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKXXXXXXXXXXX 280
T + +L + + H+P +T+ + K++ NV+Q + E K
Sbjct: 357 TIPTGTQQLAERLTHDPVTITIGQ----KNQPCA-NVRQIVLWVEEPSKKKKLFEILNDE 411
Query: 281 XV-QKKALIFTNTIDMAFRLKLFLEK-FGIKSAILNAELPQNSRLHILEEFNAGLFDYLI 338
+ Q ++F + A L ++K + + ++++ Q R I++ G FD +I
Sbjct: 412 KLYQPPVVVFVDCKLGADLLCEAVQKVMSLNTVAIHSDKMQWERNKIVKGLLEGQFDVVI 471
Query: 339 AT 340
+T
Sbjct: 472 ST 473
Score = 130 (50.8 bits), Expect = 2.0e-31, Sum P(2) = 2.0e-31
Identities = 30/85 (35%), Positives = 49/85 (57%)
Query: 356 HVDSRKSKKHP--KAKLDSEFGVV-------RGIDFKNVHTVINFEMPQNAAGYVHRIGR 406
H D + +++ K L+ +F VV RG+D NV VINF+MP N YVH+IGR
Sbjct: 447 HSDKMQWERNKIVKGLLEGQFDVVISTGILGRGLDLVNVKLVINFDMPSNMDEYVHQIGR 506
Query: 407 TGRAYNTGASVSLVSPDEMKIFEEI 431
GR + G +++ ++ + ++F E+
Sbjct: 507 AGRLGHRGTAITFMNNNNKRLFLEM 531
>SGD|S000002189 [details] [associations]
symbol:DBP10 "Putative ATP-dependent RNA helicase of the
DEAD-box protein family" species:4932 "Saccharomyces cerevisiae"
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0016818 "hydrolase activity,
acting on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISS] [GO:0030687 "preribosome, large subunit precursor"
evidence=IGI;IPI] [GO:0000463 "maturation of LSU-rRNA from
tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IMP] [GO:0000466 "maturation of 5.8S rRNA from
tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IMP] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006364 "rRNA processing" evidence=IEA]
[GO:0042254 "ribosome biogenesis" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA;IDA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012541
Pfam:PF00270 Pfam:PF00271 Pfam:PF08147 ProDom:PD024971
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 SGD:S000002189
GO:GO:0005524 GO:GO:0005730 EMBL:BK006938 GO:GO:0003723
GO:GO:0030687 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
EMBL:Z71781 GO:GO:0000463 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 KO:K14808 HOGENOM:HOG000246455
OMA:HLKVEMN OrthoDB:EOG4JWZP1 EMBL:Z74079 PIR:S67564
RefSeq:NP_010253.2 ProteinModelPortal:Q12389 SMR:Q12389
DIP:DIP-6387N IntAct:Q12389 MINT:MINT-613064 STRING:Q12389
PaxDb:Q12389 PeptideAtlas:Q12389 EnsemblFungi:YDL031W GeneID:851530
KEGG:sce:YDL031W CYGD:YDL031w GeneTree:ENSGT00550000075100
NextBio:968920 Genevestigator:Q12389 GermOnline:YDL031W
GO:GO:0000466 Uniprot:Q12389
Length = 995
Score = 294 (108.6 bits), Expect = 2.0e-31, Sum P(3) = 2.0e-31
Identities = 77/238 (32%), Positives = 131/238 (55%)
Query: 32 GLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNE 91
GL +++ + +KG ++PT IQ+ +IPLIL+ +D+V A+TGSGKT A++LP++ +L +
Sbjct: 143 GLSKIVLNNIKRKGFRQPTPIQRKTIPLILQSRDIVGMARTGSGKTAAFILPMVEKLKSH 202
Query: 92 SSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAALA 151
S K+ A++L P+REL Q ++ + +G +L+ V LT + +
Sbjct: 203 SG---KIGARAVILSPSRELAMQTFN---VFKDFARG-TELRSVLLTGGDSLEEQFGMMM 255
Query: 152 GPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPR 211
PD++IATPG + L V + S++ +V DEAD L G+++ L L A +P
Sbjct: 256 TNPDVIIATPG---RFLHLKVEMNLDLK-SVEYVVFDEADRLFEMGFQEQLNELLASLPT 311
Query: 212 GCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDK 269
Q LL SAT + + K L NP ++ L D + +V +N++ ++S D+
Sbjct: 312 TRQTLLFSATLPNSLVDFVKAGLVNPVLVRL----DAETKV-SENLEMLFLSSKNADR 364
Score = 118 (46.6 bits), Expect = 2.0e-31, Sum P(3) = 2.0e-31
Identities = 22/59 (37%), Positives = 39/59 (66%)
Query: 378 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVG 436
RG+D + VIN+ +P ++ +VHR+GRT RA N G + S+V+ +E+ +++ F+G
Sbjct: 494 RGVDIPMLANVINYTLPGSSKIFVHRVGRTARAGNKGWAYSIVAENELPYLLDLELFLG 552
Score = 56 (24.8 bits), Expect = 2.0e-31, Sum P(3) = 2.0e-31
Identities = 16/59 (27%), Positives = 25/59 (42%)
Query: 283 QKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATD 341
+K ++F T + L G + + L Q++R L F AGL L+ TD
Sbjct: 432 EKATILFVPTRHHVEYISQLLRDCGYLISYIYGTLDQHARKRQLYNFRAGLTSILVVTD 490
Score = 45 (20.9 bits), Expect = 7.1e-24, Sum P(3) = 7.1e-24
Identities = 14/48 (29%), Positives = 21/48 (43%)
Query: 395 QNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDDENED 442
+ AG H I + G + VS D +K FE+ + ENE+
Sbjct: 727 ERMAGLSHSIEDEILKGDDGETGYTVSEDALKEFEDADQLLEAQENEN 774
>WB|WBGene00012059 [details] [associations]
symbol:T26G10.1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0040010 "positive regulation of
growth rate" evidence=IMP] [GO:0010171 "body morphogenesis"
evidence=IMP] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0040035 "hermaphrodite genitalia
development" evidence=IMP] [GO:0006915 "apoptotic process"
evidence=IMP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0009792 GO:GO:0040007 GO:GO:0040010 GO:GO:0006915
GO:GO:0002119 GO:GO:0010171 GO:GO:0003723 GO:GO:0040035
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268802 GeneTree:ENSGT00670000098028 KO:K14777
OMA:IFIPSKF EMBL:Z29115 PIR:S40731 RefSeq:NP_499069.1
ProteinModelPortal:P34580 SMR:P34580 STRING:P34580 PaxDb:P34580
EnsemblMetazoa:T26G10.1 GeneID:176321 KEGG:cel:CELE_T26G10.1
UCSC:T26G10.1 CTD:176321 WormBase:T26G10.1 InParanoid:P34580
NextBio:892086 Uniprot:P34580
Length = 489
Score = 278 (102.9 bits), Expect = 2.1e-31, Sum P(2) = 2.1e-31
Identities = 76/208 (36%), Positives = 114/208 (54%)
Query: 31 LGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFN 90
LG+ L A + G KP+ IQQA++P L+GKDV+ A+TGSGKT A+ +P+L L +
Sbjct: 49 LGVSQPLCDACQRLGWMKPSKIQQAALPHALQGKDVIGLAETGSGKTGAFAIPVLQSLLD 108
Query: 91 ESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAAL 150
P++ LVL PTREL Q+ + AL + L + + + AL
Sbjct: 109 H--PQAFFC---LVLTPTRELAFQIGQQFEAL----GSGIGLIAAVIVGGVDMAAQAMAL 159
Query: 151 AGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLKALSAVI 209
A P I++ATPG + L +K F+ +LK L++DEAD +L+ +E +L + VI
Sbjct: 160 ARRPHIIVATPGRLVDHLEN----TKGFNLKALKFLIMDEADRILNMDFEVELDKILKVI 215
Query: 210 PRGCQCLLMSATSSSDVDKLKKLILHNP 237
PR + L SAT + V KL++ L +P
Sbjct: 216 PRERRTYLFSATMTKKVSKLERASLRDP 243
Score = 205 (77.2 bits), Expect = 7.4e-23, Sum P(2) = 7.4e-23
Identities = 66/240 (27%), Positives = 113/240 (47%)
Query: 103 LVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPG 162
LVL PTREL Q+ + AL + L + + + ALA P I++ATPG
Sbjct: 116 LVLTPTRELAFQIGQQFEAL----GSGIGLIAAVIVGGVDMAAQAMALARRPHIIVATPG 171
Query: 163 CMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSAT 221
+ L +K F+ +LK L++DEAD +L+ +E +L + VIPR + L SAT
Sbjct: 172 RLVDHLEN----TKGFNLKALKFLIMDEADRILNMDFEVELDKILKVIPRERRTYLFSAT 227
Query: 222 SSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKXXXXXXXXXXXX 281
+ V KL++ L +P +++ D N++Q +I + K
Sbjct: 228 MTKKVSKLERASLRDPARVSVSSRYKTVD-----NLKQHYIFVPNKYKETYLVYLLNEHA 282
Query: 282 VQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATD 341
A++F T ++ + L + G+++ L+ ++ Q RL L +F + + L+ TD
Sbjct: 283 -GNSAIVFCATCATTMQIAVMLRQLGMQAVPLHGQMSQEKRLGSLNKFKSKAREILVCTD 341
Score = 135 (52.6 bits), Expect = 2.1e-31, Sum P(2) = 2.1e-31
Identities = 29/93 (31%), Positives = 56/93 (60%)
Query: 378 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGD 437
RG+D +V VIN++MP + YVHR+GRT RA +G ++++V+ +++ +++I++ +G
Sbjct: 345 RGLDIPHVDMVINYDMPSQSKDYVHRVGRTARAGRSGIAITVVTQYDVEAYQKIEANLGK 404
Query: 438 --DENED-SNIIAPFPLLAQNAVESLRYRAEDV 467
DE + N + Q A E+ R +++
Sbjct: 405 KLDEYKCVENEVMVLVERTQEATENARIEMKEM 437
Score = 57 (25.1 bits), Expect = 3.0e-23, Sum P(2) = 3.0e-23
Identities = 22/76 (28%), Positives = 34/76 (44%)
Query: 530 LLDAKTQEACKMVKLARAAMGNKNSSRRQGPRRKFRKSDPLKSFSAEPTKRAGKGRMKRE 589
+L +TQEA + AR M + ++ G +R R++D + E R G
Sbjct: 418 VLVERTQEATEN---ARIEMKEMDEKKKSGKKR--RQNDDFGD-TEESGGRFKMGIKSMG 471
Query: 590 GRNGDDTGKHKKKKSL 605
GR G G+ KKK +
Sbjct: 472 GRGGSGGGRGGKKKKM 487
>ASPGD|ASPL0000055571 [details] [associations]
symbol:AN1266 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0044732 "mitotic spindle pole body" evidence=IEA]
[GO:0005829 "cytosol" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0008380
EMBL:BN001308 GO:GO:0006397 GO:GO:0003676 EMBL:AACD01000017
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 KO:K12811
OMA:SVVAPEI HOGENOM:HOG000007229 OrthoDB:EOG40CMR1
RefSeq:XP_658870.1 ProteinModelPortal:Q5BDW4
EnsemblFungi:CADANIAT00001356 GeneID:2877043 KEGG:ani:AN1266.2
Uniprot:Q5BDW4
Length = 1173
Score = 291 (107.5 bits), Expect = 2.1e-31, Sum P(2) = 2.1e-31
Identities = 91/315 (28%), Positives = 148/315 (46%)
Query: 32 GLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNE 91
GL ++ + ++K G T IQ +IP I+ G+DV+ AKTGSGKT A+L+P+ + ++
Sbjct: 547 GLGIQTLDVIDKLGFASLTSIQAQAIPAIMSGRDVIGVAKTGSGKTMAFLIPMFRHIKDQ 606
Query: 92 SSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAALA 151
++ P L++ PTREL Q++ + ++ + L+ V P D A L
Sbjct: 607 RPLENMEGPIGLIMTPTRELATQIHKDCKPFLKA----LNLRAVCAYGGAPIKDQIAELK 662
Query: 152 GPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDD-LKALSAVIP 210
+I++ TPG M L+ + + + +VLDEAD + G+E +K LS V P
Sbjct: 663 RGAEIIVCTPGRMIDLLAANAGRVTNLR-RVTYVVLDEADRMFDMGFEPQVMKILSNVRP 721
Query: 211 RGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKX 270
Q +L SAT +++ L + L P + VG + V P+ + Q C+E K
Sbjct: 722 DR-QTVLFSATFPRNMEALARKTLTKPIEIV---VGG-RSVVAPE-ITQIVEVCNEEKKF 775
Query: 271 XXXXXX-----XXXXXVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHI 325
++LIF + + A L L + G ++ Q R
Sbjct: 776 VRLLELLGNLYSTDENEDARSLIFVDRQEAADTLLRELMRKGYPCMSIHGGKDQIDRDST 835
Query: 326 LEEFNAGLFDYLIAT 340
+E+F AG+F LIAT
Sbjct: 836 IEDFKAGIFPVLIAT 850
Score = 137 (53.3 bits), Expect = 2.1e-31, Sum P(2) = 2.1e-31
Identities = 30/84 (35%), Positives = 46/84 (54%)
Query: 348 KDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRT 407
KDQ D ++ K+ P S RG+D K + V+N++ P + YVHR GRT
Sbjct: 827 KDQIDRDSTIEDFKAGIFPVLIATSV--AARGLDVKQLKLVVNYDAPNHLEDYVHRAGRT 884
Query: 408 GRAYNTGASVSLVSPDEMKIFEEI 431
GRA NTG +V+ ++ D+ + +I
Sbjct: 885 GRAGNTGTAVTFLTEDQERYSVDI 908
Score = 37 (18.1 bits), Expect = 5.9e-21, Sum P(2) = 5.9e-21
Identities = 10/23 (43%), Positives = 12/23 (52%)
Query: 375 GVVRGIDFKNVHTVINFEMPQNA 397
GV +GID TV E+ NA
Sbjct: 1009 GVPKGIDLDGKITVHKREVDPNA 1031
>UNIPROTKB|Q9NXZ2 [details] [associations]
symbol:DDX43 "Probable ATP-dependent RNA helicase DDX43"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=TAS] [GO:0005622 "intracellular"
evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR011545
Pfam:PF00013 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS50084 PROSITE:PS51194 SMART:SM00322 SMART:SM00490
GO:GO:0005524 GO:GO:0003723 GO:GO:0005622 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268804
HOVERGEN:HBG015893 EMBL:AJ278110 EMBL:AL136751 EMBL:BC066938
IPI:IPI00032899 RefSeq:NP_061135.2 UniGene:Hs.125507
ProteinModelPortal:Q9NXZ2 SMR:Q9NXZ2 STRING:Q9NXZ2
PhosphoSite:Q9NXZ2 DMDM:145559466 PRIDE:Q9NXZ2 DNASU:55510
Ensembl:ENST00000370336 GeneID:55510 KEGG:hsa:55510 UCSC:uc003pgw.3
CTD:55510 GeneCards:GC06P074161 HGNC:HGNC:18677 HPA:HPA031380
HPA:HPA031381 MIM:606286 neXtProt:NX_Q9NXZ2 PharmGKB:PA134988734
InParanoid:Q9NXZ2 OMA:VLDITHV OrthoDB:EOG43BMNQ PhylomeDB:Q9NXZ2
ChiTaRS:DDX43 GenomeRNAi:55510 NextBio:59918 ArrayExpress:Q9NXZ2
Bgee:Q9NXZ2 CleanEx:HS_DDX43 Genevestigator:Q9NXZ2
GermOnline:ENSG00000080007 Uniprot:Q9NXZ2
Length = 648
Score = 288 (106.4 bits), Expect = 2.1e-31, Sum P(2) = 2.1e-31
Identities = 99/306 (32%), Positives = 143/306 (46%)
Query: 41 LNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLP-LLHRLFNESSPKSKLA 99
+ K G QKPT IQ + P++L+G D++ A+TG+GKT YL+P +H + S +
Sbjct: 257 IKKAGFQKPTPIQSQAWPIVLQGIDLIGVAQTGTGKTLCYLMPGFIHLVLQPSLKGQRNR 316
Query: 100 PAALVLVPTRELCQQVYSEVMALIELCKGQVQ-LKVVQLTSSMPASDLRAALAGPPDIVI 158
P LVL PTREL QV E CK + L+ V + + L DI+I
Sbjct: 317 PGMLVLTPTRELALQVEGEC------CKYSYKGLRSVCVYGGGNRDEQIEELKKGVDIII 370
Query: 159 ATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDL-KALSAVIPRGCQCLL 217
ATPG + + + K+ + LVLDEAD +L G+E + K L V P Q ++
Sbjct: 371 ATPGRLNDLQMSNFVNLKNIT----YLVLDEADKMLDMGFEPQIMKILLDVRPDR-QTVM 425
Query: 218 MSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKXXXXXXXX 277
SAT V +L + L P I+ VG + D V +V+Q I +E +K
Sbjct: 426 TSATWPHSVHRLAQSYLKEPMIVY---VGTL-DLVAVSSVKQNIIVTTEEEKWSHMQTFL 481
Query: 278 XXXXVQKKALIFTNTIDMAFRLK--LFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFD 335
K ++F + +A L L L ++S L+ + Q R LE F G
Sbjct: 482 QSMSSTDKVIVFVSRKAVADHLSSDLILGNISVES--LHGDREQRDREKALENFKTGKVR 539
Query: 336 YLIATD 341
LIATD
Sbjct: 540 ILIATD 545
Score = 131 (51.2 bits), Expect = 2.1e-31, Sum P(2) = 2.1e-31
Identities = 24/54 (44%), Positives = 37/54 (68%)
Query: 378 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEI 431
RG+D +V V NF+ P+N YVHRIGRTGRA TG S++ ++ ++ ++ E+
Sbjct: 549 RGLDVHDVTHVYNFDFPRNIEEYVHRIGRTGRAGRTGVSITTLTRNDWRVASEL 602
>TAIR|locus:2159517 [details] [associations]
symbol:PDE340 "PIGMENT DEFECTIVE 340" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA;ISS] [GO:0009507 "chloroplast"
evidence=IDA] [GO:0009220 "pyrimidine ribonucleotide biosynthetic
process" evidence=RCA] InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:CP002688 GenomeReviews:BA000015_GR
GO:GO:0009507 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268799 EMBL:AB006697 EMBL:AJ010474
IPI:IPI00522710 PIR:T51747 RefSeq:NP_196478.2 UniGene:At.32551
ProteinModelPortal:Q9FNM7 SMR:Q9FNM7 STRING:Q9FNM7 PaxDb:Q9FNM7
PRIDE:Q9FNM7 EnsemblPlants:AT5G08610.1 GeneID:830762
KEGG:ath:AT5G08610 GeneFarm:949 TAIR:At5g08610 InParanoid:Q9FNM7
OMA:GRNDRNV PhylomeDB:Q9FNM7 ProtClustDB:CLSN2918084
Genevestigator:Q9FNM7 GermOnline:AT5G08610 Uniprot:Q9FNM7
Length = 850
Score = 313 (115.2 bits), Expect = 2.3e-31, Sum P(2) = 2.3e-31
Identities = 96/321 (29%), Positives = 161/321 (50%)
Query: 40 ALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLA 99
A+ G + T++Q+A++P+IL+GKDV+A+AKTG+GKT A+LLP + + +S P S+ +
Sbjct: 396 AIKDAGFETMTVVQEATLPIILQGKDVLAKAKTGTGKTVAFLLPAIEAVI-KSPPASRDS 454
Query: 100 --PAALVLV--PTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAALAGPPD 155
P +VLV PTREL Q +E L++ + ++VV + +P ++ R P
Sbjct: 455 RQPPIIVLVVCPTRELASQAAAEANTLLKY-HPSIGVQVVIGGTKLP-TEQRRMQTNPCQ 512
Query: 156 IVIATPGCMPKCL-STGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQ 214
I++ATPG + + +T ++ +K+LVLDEAD LL G+ D++ + A +P+ Q
Sbjct: 513 ILVATPGRLKDHIENTSGFATRLMG--VKVLVLDEADHLLDMGFRRDIERIIAAVPKQRQ 570
Query: 215 CLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSER--DKXXX 272
L SAT +V ++ + L + + V + E K Q + I+ +R
Sbjct: 571 TFLFSATVPEEVRQICHVALKRDHEF-INCVQEGSGETHQKVTQMYMIASLDRHFSLLHV 629
Query: 273 XXXXXXXXXVQKKALIFTNTIDMAFRLKL-FLEKFGIKSAILNAELPQNSRLHILEEFNA 331
V K +IF T M RL L + + +++ PQ+ R + +EF
Sbjct: 630 LLKEHIADNVDYKVIIFCTTA-MVTRLVADLLSQLSLNVREIHSRKPQSYRTRVSDEFRK 688
Query: 332 GLFDYLIATDDTQTKEKDQSD 352
L+ T D + D D
Sbjct: 689 SKAIILV-TSDVSARGVDYPD 708
Score = 108 (43.1 bits), Expect = 2.3e-31, Sum P(2) = 2.3e-31
Identities = 20/55 (36%), Positives = 31/55 (56%)
Query: 378 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIK 432
RG+D+ +V V+ +P + Y+HR+GRTGR G V L++P E +K
Sbjct: 702 RGVDYPDVSLVVQMGLPSDREQYIHRLGRTGRKGKEGEGVLLLAPWEEYFMSSVK 756
>ZFIN|ZDB-GENE-021212-1 [details] [associations]
symbol:ddx55 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
55" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0007275 "multicellular organismal development"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
ZFIN:ZDB-GENE-021212-1 GO:GO:0007275 GO:GO:0005524 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
InterPro:IPR025313 Pfam:PF13959 HSSP:P26196 CTD:57696
HOGENOM:HOG000268803 HOVERGEN:HBG107796 KO:K14809 OrthoDB:EOG4WH8KN
EMBL:AF506203 EMBL:BC059534 IPI:IPI00493927 RefSeq:NP_775336.1
UniGene:Dr.16883 ProteinModelPortal:Q8JHJ2 STRING:Q8JHJ2
GeneID:286745 KEGG:dre:286745 InParanoid:Q8JHJ2 NextBio:20806420
ArrayExpress:Q8JHJ2 Uniprot:Q8JHJ2
Length = 593
Score = 314 (115.6 bits), Expect = 2.4e-31, Sum P(2) = 2.4e-31
Identities = 90/313 (28%), Positives = 147/313 (46%)
Query: 37 LVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKS 96
++ L + G T +Q A IPL + KDV A A TGSGKT A+++P L L
Sbjct: 20 ILQTLKELGFTYMTPVQSACIPLFMSNKDVAAEAVTGSGKTLAFVIPALEILLKREEKLK 79
Query: 97 KLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQL-KVVQLTSSMPASDLRAALAGPPD 155
K+ AL++ PTREL Q+ SEVM +G Q +++ + S P D+ +
Sbjct: 80 KMQVGALIITPTRELAMQI-SEVMG--RFLQGFPQFTQILLIGGSNPIEDVEKLKTQGAN 136
Query: 156 IVIATPGCMPKCLSTGV--LQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGC 213
I+IATPG + L + SL +LVLDEAD LL G+E L + +P+
Sbjct: 137 IIIATPGRLEDMFRRKADGLDLATAVKSLDVLVLDEADRLLDMGFEASLNTILGYLPKQR 196
Query: 214 QCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEV--IPKNVQQFWISCSERDKXX 271
+ L SAT + +++KL + L NP +T+ E G V P + ++ C +K
Sbjct: 197 RTGLFSATQTQELEKLVRAGLRNPVRITVKEKGVAASSVQKTPAKLSNYYTMCRAEEKFN 256
Query: 272 XXXXXXXXXXVQKKALIFTNTIDMAF---RLKLFLEKFGIKSAILNAELPQNSRLHILEE 328
+K+ + F+ + + L++ ++ I ++ ++ ++ R I +
Sbjct: 257 TLVAFLRQHKHEKQLVFFSTCACVEYFGKALEVLVKNVSIHC--IHGKM-KHKRNKIFAD 313
Query: 329 FNAGLFDYLIATD 341
F A L+ TD
Sbjct: 314 FRALKSGILVCTD 326
Score = 99 (39.9 bits), Expect = 2.4e-31, Sum P(2) = 2.4e-31
Identities = 19/49 (38%), Positives = 30/49 (61%)
Query: 376 VVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDE 424
+ RGID V+ V+ ++ P +A+ +VHR GRT R N G ++ + P E
Sbjct: 328 MARGIDIPEVNWVLQYDPPSSASSFVHRCGRTARIGNQGNALVFLLPME 376
Score = 47 (21.6 bits), Expect = 6.7e-26, Sum P(2) = 6.7e-26
Identities = 9/14 (64%), Positives = 11/14 (78%)
Query: 360 RKSKKHPKAKLDSE 373
RK K+ PKAKLD +
Sbjct: 528 RKKKRLPKAKLDQD 541
>UNIPROTKB|Q3AFI3 [details] [associations]
symbol:CHY_0229 "ATP-dependent RNA helicase, DEAD box
family" species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268810 KO:K05592 RefSeq:YP_359101.1
ProteinModelPortal:Q3AFI3 STRING:Q3AFI3 GeneID:3727044
KEGG:chy:CHY_0229 PATRIC:21273641 OMA:YAAKGLH
BioCyc:CHYD246194:GJCN-230-MONOMER Uniprot:Q3AFI3
Length = 430
Score = 261 (96.9 bits), Expect = 2.5e-31, Sum P(2) = 2.5e-31
Identities = 75/205 (36%), Positives = 117/205 (57%)
Query: 31 LGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFN 90
LGL L+ A+N G + PT IQ+ +IPLILEG ++V +A TG+GKT AYLLP+L R+
Sbjct: 7 LGLITPLLKAVNDLGFEMPTPIQKEAIPLILEGHNLVGQAPTGTGKTAAYLLPVLQRI-- 64
Query: 91 ESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAAL 150
+ K+++ L++ PTREL QV EV L + K V+ V ++ +R
Sbjct: 65 QRGKKAQV----LIVTPTRELALQVADEVAKLGKYLK--VRALAVYGGQAIERQ-IRGLR 117
Query: 151 AGPPDIVIATPGCMPKCLSTGVLQSKSF-SDSLKILVLDEADLLLSYGYEDDLKALSAVI 209
G ++++ TPG + L + K+F + +KI++LDEAD +L G+ DD++A+ +
Sbjct: 118 QGV-EVIVGTPG---RILDH--IGRKTFPAAEIKIVILDEADEMLDMGFIDDIEAILNTL 171
Query: 210 PRGCQCLLMSATSSSDVDKLKKLIL 234
Q LL SAT + + + K L
Sbjct: 172 TNRQQTLLFSATLPAPIKTIIKKFL 196
Score = 171 (65.3 bits), Expect = 1.1e-20, Sum P(2) = 1.1e-20
Identities = 65/240 (27%), Positives = 114/240 (47%)
Query: 103 LVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPG 162
L++ PTREL QV EV L + K V+ V ++ +R G ++++ TPG
Sbjct: 73 LIVTPTRELALQVADEVAKLGKYLK--VRALAVYGGQAIERQ-IRGLRQGV-EVIVGTPG 128
Query: 163 CMPKCLSTGVLQSKSF-SDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSAT 221
+ L + K+F + +KI++LDEAD +L G+ DD++A+ + Q LL SAT
Sbjct: 129 ---RILDH--IGRKTFPAAEIKIVILDEADEMLDMGFIDDIEAILNTLTNRQQTLLFSAT 183
Query: 222 SSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKXXXXXXXXXXXX 281
+ + + K L Y T+ VG +++ +P ++Q + E +K
Sbjct: 184 LPAPIKTIIKKFLGG-Y-KTVKLVG--REKTVPA-IRQVYYELPETEKIEGLVSILNSE- 237
Query: 282 VQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATD 341
+ +A++F T + L G + L+ ++ Q R ++ F AG + L+ATD
Sbjct: 238 LPIQAIVFCRTKKRVDEVVEQLNFRGYAAKGLHGDMSQRERTQTIKSFKAGKTELLVATD 297
Score = 149 (57.5 bits), Expect = 2.5e-31, Sum P(2) = 2.5e-31
Identities = 40/116 (34%), Positives = 64/116 (55%)
Query: 361 KSKKHPKAKLDSEFGVV-RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSL 419
KS K K +L V RG+D +V VINF++PQN Y+HRIGRTGRA G +++L
Sbjct: 283 KSFKAGKTELLVATDVAARGLDIPDVSHVINFDIPQNPESYIHRIGRTGRAGREGKAITL 342
Query: 420 VSPDEMKIFEEIKSFVGDDENEDSNIIAPFPLLAQNAVESLRYR--AEDVAKSVTK 473
++ E K+ + I+ + + I P P+ +E R++ A+ + ++TK
Sbjct: 343 INYRERKLLKAIEEAINKRLKRE---ILPEPV----DLEEARFKKIAKKILDTITK 391
>TIGR_CMR|CHY_0229 [details] [associations]
symbol:CHY_0229 "ATP-dependent RNA helicase, DEAD box
family" species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268810 KO:K05592 RefSeq:YP_359101.1
ProteinModelPortal:Q3AFI3 STRING:Q3AFI3 GeneID:3727044
KEGG:chy:CHY_0229 PATRIC:21273641 OMA:YAAKGLH
BioCyc:CHYD246194:GJCN-230-MONOMER Uniprot:Q3AFI3
Length = 430
Score = 261 (96.9 bits), Expect = 2.5e-31, Sum P(2) = 2.5e-31
Identities = 75/205 (36%), Positives = 117/205 (57%)
Query: 31 LGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFN 90
LGL L+ A+N G + PT IQ+ +IPLILEG ++V +A TG+GKT AYLLP+L R+
Sbjct: 7 LGLITPLLKAVNDLGFEMPTPIQKEAIPLILEGHNLVGQAPTGTGKTAAYLLPVLQRI-- 64
Query: 91 ESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAAL 150
+ K+++ L++ PTREL QV EV L + K V+ V ++ +R
Sbjct: 65 QRGKKAQV----LIVTPTRELALQVADEVAKLGKYLK--VRALAVYGGQAIERQ-IRGLR 117
Query: 151 AGPPDIVIATPGCMPKCLSTGVLQSKSF-SDSLKILVLDEADLLLSYGYEDDLKALSAVI 209
G ++++ TPG + L + K+F + +KI++LDEAD +L G+ DD++A+ +
Sbjct: 118 QGV-EVIVGTPG---RILDH--IGRKTFPAAEIKIVILDEADEMLDMGFIDDIEAILNTL 171
Query: 210 PRGCQCLLMSATSSSDVDKLKKLIL 234
Q LL SAT + + + K L
Sbjct: 172 TNRQQTLLFSATLPAPIKTIIKKFL 196
Score = 171 (65.3 bits), Expect = 1.1e-20, Sum P(2) = 1.1e-20
Identities = 65/240 (27%), Positives = 114/240 (47%)
Query: 103 LVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPG 162
L++ PTREL QV EV L + K V+ V ++ +R G ++++ TPG
Sbjct: 73 LIVTPTRELALQVADEVAKLGKYLK--VRALAVYGGQAIERQ-IRGLRQGV-EVIVGTPG 128
Query: 163 CMPKCLSTGVLQSKSF-SDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSAT 221
+ L + K+F + +KI++LDEAD +L G+ DD++A+ + Q LL SAT
Sbjct: 129 ---RILDH--IGRKTFPAAEIKIVILDEADEMLDMGFIDDIEAILNTLTNRQQTLLFSAT 183
Query: 222 SSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKXXXXXXXXXXXX 281
+ + + K L Y T+ VG +++ +P ++Q + E +K
Sbjct: 184 LPAPIKTIIKKFLGG-Y-KTVKLVG--REKTVPA-IRQVYYELPETEKIEGLVSILNSE- 237
Query: 282 VQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATD 341
+ +A++F T + L G + L+ ++ Q R ++ F AG + L+ATD
Sbjct: 238 LPIQAIVFCRTKKRVDEVVEQLNFRGYAAKGLHGDMSQRERTQTIKSFKAGKTELLVATD 297
Score = 149 (57.5 bits), Expect = 2.5e-31, Sum P(2) = 2.5e-31
Identities = 40/116 (34%), Positives = 64/116 (55%)
Query: 361 KSKKHPKAKLDSEFGVV-RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSL 419
KS K K +L V RG+D +V VINF++PQN Y+HRIGRTGRA G +++L
Sbjct: 283 KSFKAGKTELLVATDVAARGLDIPDVSHVINFDIPQNPESYIHRIGRTGRAGREGKAITL 342
Query: 420 VSPDEMKIFEEIKSFVGDDENEDSNIIAPFPLLAQNAVESLRYR--AEDVAKSVTK 473
++ E K+ + I+ + + I P P+ +E R++ A+ + ++TK
Sbjct: 343 INYRERKLLKAIEEAINKRLKRE---ILPEPV----DLEEARFKKIAKKILDTITK 391
>WB|WBGene00019245 [details] [associations]
symbol:sacy-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0040007 "growth" evidence=IMP]
[GO:0002119 "nematode larval development" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0040010 "positive regulation of
growth rate" evidence=IMP] [GO:0002009 "morphogenesis of an
epithelium" evidence=IMP] [GO:0008340 "determination of adult
lifespan" evidence=IMP] [GO:0040035 "hermaphrodite genitalia
development" evidence=IMP] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR001878 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00343 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0008340 GO:GO:0009792 GO:GO:0002009 GO:GO:0005737
GO:GO:0040007 GO:GO:0040010 GO:GO:0002119 GO:GO:0008270
GO:GO:0003676 GO:GO:0040035 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00620000087942 HSSP:P10081 KO:K13116
OMA:KDQEERS HOGENOM:HOG000268792 EMBL:FO081567 RefSeq:NP_491962.1
ProteinModelPortal:Q9N5K1 SMR:Q9N5K1 PaxDb:Q9N5K1
EnsemblMetazoa:H27M09.1 GeneID:172413 KEGG:cel:CELE_H27M09.1
UCSC:H27M09.1 CTD:172413 WormBase:H27M09.1 InParanoid:Q9N5K1
NextBio:875413 Uniprot:Q9N5K1
Length = 630
Score = 264 (98.0 bits), Expect = 2.7e-31, Sum P(2) = 2.7e-31
Identities = 85/305 (27%), Positives = 142/305 (46%)
Query: 43 KKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNESS--PKSKL-A 99
+KGI PT IQ IP+ L G+D++ A TGSGKT ++LPL+ + P +
Sbjct: 207 QKGIVTPTAIQIQGIPVALSGRDMIGIASTGSGKTMTFVLPLVMFCLEQEMKLPFMRSEG 266
Query: 100 PAALVLVPTRELCQQVYSEVMALIE-LCK-GQVQLKVVQLTSSMPASDLRAALAGPPDIV 157
P L++VP+REL +Q++ ++ + + L K G +++ +P + + IV
Sbjct: 267 PFGLIIVPSRELARQIFDLIIEMFDALGKAGLPEMRAGLCIGGVPIGEQAKDVRDGIHIV 326
Query: 158 IATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLL 217
+ATPG + L+ ++ + + LVLDEAD +L G+ED++K++ Q LL
Sbjct: 327 VATPGRLSDMLTKKIINL----EVCRYLVLDEADRMLDMGFEDEIKSIFYFFKAQRQTLL 382
Query: 218 MSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKXXXXXXXX 277
SAT + K L P ++ + G V+ + +F R +
Sbjct: 383 FSATMPRKIQFFAKSALVKPIVVNVGRAGAASLNVLQE--LEF-----VRSENKLVRVLE 435
Query: 278 XXXXVQKKALIFTNT-IDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDY 336
K LIF +D+ + L K G++ A ++ Q+ R +E F D
Sbjct: 436 CLQKTSPKVLIFAEKKVDVDNIYEYLLVK-GVEVASIHGGKDQSDRHAGIEAFRKNEKDV 494
Query: 337 LIATD 341
L+ATD
Sbjct: 495 LVATD 499
Score = 156 (60.0 bits), Expect = 2.7e-31, Sum P(2) = 2.7e-31
Identities = 33/96 (34%), Positives = 55/96 (57%)
Query: 348 KDQSDEGGHVDS-RKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGR 406
KDQSD +++ RK++K D +G+DF+ + VINF+MP++ YVHRIGR
Sbjct: 475 KDQSDRHAGIEAFRKNEKDVLVATDV---ASKGLDFQGIEHVINFDMPEDIENYVHRIGR 531
Query: 407 TGRAYNTGASVSLVSP-DEMKIFEEIKSFVGDDENE 441
TGR+ G + + ++ EM + ++K + + E
Sbjct: 532 TGRSGRKGLATTFINKKSEMSVLSDLKQLLAEAGQE 567
>UNIPROTKB|I3LLD5 [details] [associations]
symbol:I3LLD5 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00530000062880 Ensembl:ENSSSCT00000032168 OMA:SKRERIM
Uniprot:I3LLD5
Length = 401
Score = 271 (100.5 bits), Expect = 2.9e-31, Sum P(2) = 2.9e-31
Identities = 89/314 (28%), Positives = 151/314 (48%)
Query: 31 LGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFN 90
+ L L+ + G +KP+ IQQ +I ++G DV+A+A++G+GKT + + +L ++
Sbjct: 37 MNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQI-- 94
Query: 91 ESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAAL 150
E K A ALVL PTREL QQ+ VMAL + + + ++++
Sbjct: 95 ELDLK---ATQALVLAPTRELAQQIQKVVMALGDYMGASCHACI---GGTNVRAEVQKLQ 148
Query: 151 AGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIP 210
P I++ TPG + L+ L K +K+ VLDEAD +LS G++D + + +
Sbjct: 149 MEAPHIIVGTPGRVFDMLNRRYLSPKY----IKMFVLDEADEMLSRGFKDQIYDIFQKLN 204
Query: 211 RGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKX 270
Q +L+SAT SDV ++ K + +P + L G ++QF+I+ +
Sbjct: 205 SNTQVVLLSATMPSDVLEVTKKFMRDPIRIXLTLEG----------IRQFYINVEREEWK 254
Query: 271 XXXXXXXXXXXVQKKALIFTNT---IDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILE 327
+A+IF NT +D K+ F + + ++ ++ Q R I+
Sbjct: 255 LDTLCDLYETLTITQAVIFINTRRKVDWLTE-KMHARDFTVSA--MHGDMDQKERDVIMR 311
Query: 328 EFNAGLFDYLIATD 341
EF +G LI TD
Sbjct: 312 EFRSGSSRVLITTD 325
Score = 131 (51.2 bits), Expect = 2.9e-31, Sum P(2) = 2.9e-31
Identities = 22/59 (37%), Positives = 39/59 (66%)
Query: 376 VVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSF 434
+ RGID + V VIN+++P N Y+HRIGR GR G ++++V+ ++ + +I++F
Sbjct: 327 LARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEEDKRTLRDIETF 385
>RGD|1311124 [details] [associations]
symbol:Ddx49 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 49"
species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 RGD:1311124 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 OMA:EVRTVEQ
GeneTree:ENSGT00670000098028 IPI:IPI00362462 PRIDE:E9PTF0
Ensembl:ENSRNOT00000004891 UCSC:RGD:1311124 Uniprot:E9PTF0
Length = 480
Score = 301 (111.0 bits), Expect = 3.1e-31, Sum P(2) = 3.1e-31
Identities = 101/318 (31%), Positives = 150/318 (47%)
Query: 31 LGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFN 90
L L LV + G+++PT +Q IP ILEG+D + AKTGSGKT A++LP+L +L
Sbjct: 7 LRLSSWLVEQCRQLGLKQPTPVQLGCIPAILEGRDCLGCAKTGSGKTAAFVLPILQKLSE 66
Query: 91 ESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAAL 150
+ P LVL PTREL Q+ + L + + LK + M L
Sbjct: 67 D--PYGIFC---LVLTPTRELAYQIAEQFRVLGK----PLGLKDCIIVGGMDMVTQALEL 117
Query: 151 AGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYED---DLKALS 206
+ P +VIATPG + L + S +F+ ++ LVLDEAD LL G D DL+ +
Sbjct: 118 SRKPHVVIATPGRLADHLRS----SNTFNMKKIRFLVLDEADRLLEQGCTDFTADLETIL 173
Query: 207 AVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSE 266
+ +P Q LL SAT + + +L+ L + P+ E V + + Q ++ E
Sbjct: 174 SAVPARRQTLLFSATLTDTLKELQGLATNQPFFW---EAQATVRTV--EQLDQRYLLVPE 228
Query: 267 RDKXXXXXXXXXXXXVQKK---ALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRL 323
+ K Q + +IFTNT L + L KF + L++ + Q R
Sbjct: 229 KVKDAYLVHLVQTFQDQLEDCSIIIFTNTCKTCQILCMMLRKFNFPTVALHSMMKQKERF 288
Query: 324 HILEEFNAGLFDYLIATD 341
L F + + LIATD
Sbjct: 289 AALARFKSSTYRILIATD 306
Score = 105 (42.0 bits), Expect = 3.1e-31, Sum P(2) = 3.1e-31
Identities = 24/73 (32%), Positives = 40/73 (54%)
Query: 378 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIF----EEIKS 433
RG+D V VIN P Y+HR+GRT RA G +++LV+ ++ + EEIK
Sbjct: 310 RGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRQGQAITLVTQYDIHLLHAIEEEIKQ 369
Query: 434 FVGDDENEDSNII 446
+ + E++ ++
Sbjct: 370 QLAELAVEEAQVL 382
>FB|FBgn0032919 [details] [associations]
symbol:CG9253 species:7227 "Drosophila melanogaster"
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081
EMBL:AY121677 ProteinModelPortal:Q8MRB7 SMR:Q8MRB7 STRING:Q8MRB7
PaxDb:Q8MRB7 PRIDE:Q8MRB7 FlyBase:FBgn0032919 InParanoid:Q8MRB7
OrthoDB:EOG4V41Q7 ArrayExpress:Q8MRB7 Bgee:Q8MRB7 Uniprot:Q8MRB7
Length = 507
Score = 274 (101.5 bits), Expect = 3.1e-31, Sum P(2) = 3.1e-31
Identities = 77/208 (37%), Positives = 114/208 (54%)
Query: 31 LGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFN 90
LGL+ L A ++ + P+ IQ+ +IP+ L+GKDV+ A+TGSGKT A+ LP+LH L
Sbjct: 66 LGLNEALCQACDELKWKAPSKIQREAIPVALQGKDVIGLAETGSGKTGAFALPILHALLE 125
Query: 91 ESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAAL 150
+P+ A LVL PTREL Q+ + AL + +K + M L
Sbjct: 126 --NPQRYFA---LVLTPTRELAFQIGEQFEAL----GSGIGIKCCVVVGGMDMVAQGLQL 176
Query: 151 AGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLKALSAVI 209
A P I+IATPG + L K F+ ++K LV+DEAD +L+ +E +L + V+
Sbjct: 177 AKKPHIIIATPGRLVDHLEN----MKGFNLKAIKYLVMDEADRILNMDFEVELDKILKVL 232
Query: 210 PRGCQCLLMSATSSSDVDKLKKLILHNP 237
PR + L SAT + V KL++ L +P
Sbjct: 233 PRERRTFLFSATMTKKVKKLQRASLKDP 260
Score = 205 (77.2 bits), Expect = 3.3e-23, Sum P(2) = 3.3e-23
Identities = 72/241 (29%), Positives = 114/241 (47%)
Query: 102 ALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATP 161
ALVL PTREL Q+ + AL + +K + M LA P I+IATP
Sbjct: 132 ALVLTPTRELAFQIGEQFEAL----GSGIGIKCCVVVGGMDMVAQGLQLAKKPHIIIATP 187
Query: 162 GCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSA 220
G + L K F+ ++K LV+DEAD +L+ +E +L + V+PR + L SA
Sbjct: 188 GRLVDHLEN----MKGFNLKAIKYLVMDEADRILNMDFEVELDKILKVLPRERRTFLFSA 243
Query: 221 TSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKXXXXXXXXXXX 280
T + V KL++ L +P + EV + K + + + +QQ ++ + K
Sbjct: 244 TMTKKVKKLQRASLKDPVKV---EVSN-KYQTV-EQLQQSYLFIPVKYKDVYLVHILNEL 298
Query: 281 XVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIAT 340
+IF +T + + L L G+ + L+ ++ QN RL L +F A LI+T
Sbjct: 299 A-GNSFMIFCSTCNNTVKTALMLRALGLAAIPLHGQMSQNKRLAALNKFKAKNRSILIST 357
Query: 341 D 341
D
Sbjct: 358 D 358
Score = 139 (54.0 bits), Expect = 3.1e-31, Sum P(2) = 3.1e-31
Identities = 22/59 (37%), Positives = 43/59 (72%)
Query: 378 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVG 436
RG+D +V V+NF++P ++ Y+HR+GRT RA +G +++LVS ++++++ I+ +G
Sbjct: 362 RGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITLVSQYDIELYQRIEHLLG 420
Score = 37 (18.1 bits), Expect = 2.8e-05, Sum P(2) = 2.8e-05
Identities = 10/43 (23%), Positives = 22/43 (51%)
Query: 341 DDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFK 383
+ TQ + D+ ++ G + ++ + + + DSE + G D K
Sbjct: 8 EQTQLQTSDEEEDLGSEEEQEDEDNNHKEGDSE-AALSGEDDK 49
>TAIR|locus:2222617 [details] [associations]
symbol:AT5G14610 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0009664
"plant-type cell wall organization" evidence=RCA] [GO:0042545 "cell
wall modification" evidence=RCA] InterPro:IPR000629
InterPro:IPR001202 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 Pfam:PF00397 PROSITE:PS00039
PROSITE:PS01159 PROSITE:PS50020 PROSITE:PS51194 SMART:SM00456
SMART:SM00490 GO:GO:0005524 EMBL:CP002688 GO:GO:0003676
Gene3D:2.20.70.10 SUPFAM:SSF51045 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
KO:K12823 IPI:IPI00992350 RefSeq:NP_196965.2 UniGene:At.43560
ProteinModelPortal:F4K6V1 SMR:F4K6V1 PRIDE:F4K6V1
EnsemblPlants:AT5G14610.1 GeneID:831313 KEGG:ath:AT5G14610
OMA:YLIPGFM Uniprot:F4K6V1
Length = 712
Score = 297 (109.6 bits), Expect = 3.4e-31, Sum P(2) = 3.4e-31
Identities = 93/302 (30%), Positives = 146/302 (48%)
Query: 45 GIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLP-LLH--RLFNESSPKSKLAPA 101
G P+ IQ S P+ ++ +D+VA AKTGSGKT YL+P +H R+ N+S ++ P
Sbjct: 248 GFSAPSPIQAQSWPIAMQNRDIVAIAKTGSGKTLGYLIPGFMHLQRIHNDS----RMGPT 303
Query: 102 ALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATP 161
LVL PTREL Q+ E + + K + L P + DIV+ATP
Sbjct: 304 ILVLSPTRELATQIQVEALKFGKSSK----ISCACLYGGAPKGPQLKEIERGVDIVVATP 359
Query: 162 GCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSA 220
G + +L+ K S + LVLDEAD +L G+E ++ + +P Q L+ +A
Sbjct: 360 GRL-----NDILEMKRISLHQVSYLVLDEADRMLDMGFEPQIRKIVNEVPTKRQTLMYTA 414
Query: 221 TSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKXXXXXXXXXXX 280
T +V K+ +L NP + +G+V + V K++ Q + +K
Sbjct: 415 TWPKEVRKIAADLLVNPAQVN---IGNVDELVANKSITQTIEVLAPMEKHSRLEQILRSQ 471
Query: 281 XVQKKALIFTNTIDMAFRLKLFLEK-FGIKSAILNAELPQNSRLHILEEFNAGLFDYLIA 339
K +IF +T M +L L + FG +A ++ + Q R +L +F +G L+A
Sbjct: 472 EPGSKIIIFCSTKRMCDQLARNLTRTFG--AAAIHGDKSQAERDDVLNQFRSGRTPVLVA 529
Query: 340 TD 341
TD
Sbjct: 530 TD 531
Score = 121 (47.7 bits), Expect = 3.4e-31, Sum P(2) = 3.4e-31
Identities = 26/80 (32%), Positives = 43/80 (53%)
Query: 347 EKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGR 406
+K Q++ ++ +S + P L + RG+D K++ V+N++ P YVHRIGR
Sbjct: 506 DKSQAERDDVLNQFRSGRTPV--LVATDVAARGLDVKDIRVVVNYDFPNGVEDYVHRIGR 563
Query: 407 TGRAYNTGASVSLVSPDEMK 426
TGRA TG + + + K
Sbjct: 564 TGRAGATGLAYTFFGDQDAK 583
>UNIPROTKB|E2R316 [details] [associations]
symbol:DDX55 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313
Pfam:PF13959 Ensembl:ENSCAFT00000035837 Uniprot:E2R316
Length = 483
Score = 308 (113.5 bits), Expect = 3.7e-31, Sum P(2) = 3.7e-31
Identities = 93/313 (29%), Positives = 150/313 (47%)
Query: 36 RLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPK 95
+++ AL + G T +Q A+IPL ++ KDV A A TGSGKT A+++P+L L
Sbjct: 19 QVLGALGQLGFPHMTPVQSATIPLFMKNKDVAAEAVTGSGKTLAFVIPILEILLRREEKL 78
Query: 96 SKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQL-KVVQLTSSMPASDLRAALAGPP 154
K A+++ PTREL QV EV+A K Q +++ + PA D+
Sbjct: 79 KKNQVGAIIITPTRELAIQV-DEVLA--HFTKSFPQFSQILWIGGRNPADDVSRFKEQGG 135
Query: 155 DIVIATPGCMPKCLSTGV--LQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRG 212
+I++ATPG + V L S SL++LVLDEAD LL G+E + + +P+
Sbjct: 136 NIIVATPGRLEDMFRRKVEGLDLASCVKSLEVLVLDEADRLLDMGFEASINTILEFLPKQ 195
Query: 213 CQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEV--IPKNVQQFWISCSERDKX 270
+ L SAT + +V+ L + L NP +++ E G P ++ +++ C + D+
Sbjct: 196 RRTGLFSATQTQEVESLVRAGLRNPVRISVKEKGVAASSTQKTPSRLENYYMVC-KADEK 254
Query: 271 XXXXXXXXXXXVQKKALIFTNTIDMAFRLKLFLEKF--GIKSAILNAELPQNSRLHILEE 328
Q+K LIF +T LE +K ++ ++ ++ R I E
Sbjct: 255 FNQLVHFLRNHKQEKHLIFFSTCACVEYYGKALEALVKSVKIMCIHGKM-KHKRNKIFME 313
Query: 329 FNAGLFDYLIATD 341
F L+ TD
Sbjct: 314 FRKLQSGILVCTD 326
Score = 96 (38.9 bits), Expect = 3.7e-31, Sum P(2) = 3.7e-31
Identities = 18/49 (36%), Positives = 31/49 (63%)
Query: 376 VVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDE 424
+ RGID V+ V+ ++ P +A+ +VHR GRT R + G+++ + P E
Sbjct: 328 MARGIDIPEVNWVLQYDPPSSASAFVHRCGRTARIGHGGSALVFLLPME 376
>FB|FBgn0003261 [details] [associations]
symbol:Rm62 "Rm62" species:7227 "Drosophila melanogaster"
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS;NAS]
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0005515 "protein
binding" evidence=IPI] [GO:0016246 "RNA interference" evidence=IMP]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0000381 "regulation of alternative mRNA
splicing, via spliceosome" evidence=IMP] [GO:0005634 "nucleus"
evidence=IC;IDA] [GO:0019730 "antimicrobial humoral response"
evidence=IMP] [GO:0005703 "polytene chromosome puff" evidence=IDA]
[GO:0005875 "microtubule associated complex" evidence=IDA]
[GO:0071011 "precatalytic spliceosome" evidence=IDA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IDA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IC] [GO:0005700 "polytene
chromosome" evidence=IDA] [GO:0022008 "neurogenesis" evidence=IMP]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 EMBL:AE014297 GO:GO:0005524 GO:GO:0005875
GO:GO:0006417 GO:GO:0016246 GO:GO:0022008 GO:GO:0003729
GO:GO:0019730 GO:GO:0071011 GO:GO:0000398 GO:GO:0071013
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GO:GO:0005703 GO:GO:0000381 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K12823 GeneTree:ENSGT00660000095174 EMBL:X52846
EMBL:BT001716 EMBL:BT011476 EMBL:BT015209 PIR:S11485
RefSeq:NP_001163528.1 RefSeq:NP_001189182.1 RefSeq:NP_524243.2
RefSeq:NP_731031.1 RefSeq:NP_731032.1 RefSeq:NP_731033.1
RefSeq:NP_731034.1 RefSeq:NP_731035.2 UniGene:Dm.1520
ProteinModelPortal:P19109 SMR:P19109 DIP:DIP-17867N IntAct:P19109
MINT:MINT-301207 STRING:P19109 PaxDb:P19109 PRIDE:P19109
EnsemblMetazoa:FBtr0078652 GeneID:40739 KEGG:dme:Dmel_CG10279
CTD:40739 FlyBase:FBgn0003261 InParanoid:P19109 OMA:HISNQPR
OrthoDB:EOG4QBZMP PhylomeDB:P19109 GenomeRNAi:40739 NextBio:820339
Bgee:P19109 GermOnline:CG10279 Uniprot:P19109
Length = 719
Score = 295 (108.9 bits), Expect = 3.7e-31, Sum P(2) = 3.7e-31
Identities = 93/305 (30%), Positives = 139/305 (45%)
Query: 41 LNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAP 100
+ ++G + PT IQ P+ + G + V AKTGSGKT Y+LP + + N+ + P
Sbjct: 296 IRRQGYKAPTAIQAQGWPIAMSGSNFVGIAKTGSGKTLGYILPAIVHINNQQPLQRGDGP 355
Query: 101 AALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIAT 160
ALVL PTREL QQ+ +V E + +R G +IVIAT
Sbjct: 356 IALVLAPTRELAQQI-QQVAT--EFGSSSYVRNTCVFGGAPKGGQMRDLQRGC-EIVIAT 411
Query: 161 PGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSA 220
PG + LS G K + LVLDEAD +L G+E ++ + + I Q L+ SA
Sbjct: 412 PGRLIDFLSAGSTNLKRCT----YLVLDEADRMLDMGFEPQIRKIVSQIRPDRQTLMWSA 467
Query: 221 TSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKXXXXXXXXX-- 278
T +V +L + L N YI +G ++ N++Q C E K
Sbjct: 468 TWPKEVKQLAEDFLGN-YIQI--NIGSLELSA-NHNIRQVVDVCDEFSKEEKLKTLLSDI 523
Query: 279 --XXXVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDY 336
K +IF T L F+ FG++ ++ + Q+ R +L EF +G +
Sbjct: 524 YDTSESPGKIIIFVETKRRVDNLVRFIRSFGVRCGAIHGDKSQSERDFVLREFRSGKSNI 583
Query: 337 LIATD 341
L+ATD
Sbjct: 584 LVATD 588
Score = 123 (48.4 bits), Expect = 3.7e-31, Sum P(2) = 3.7e-31
Identities = 31/80 (38%), Positives = 45/80 (56%)
Query: 378 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGD 437
RG+D + VINF+ PQN+ Y+HRIGRTGR+ G S + + + K + K+ V D
Sbjct: 592 RGLDVDGIKYVINFDYPQNSEDYIHRIGRTGRSNTKGTSFAFFTKNNAK---QAKALV-D 647
Query: 438 DENEDSNIIAP-FPLLAQNA 456
E + I P LA+N+
Sbjct: 648 VLREANQEINPALENLARNS 667
>DICTYBASE|DDB_G0292992 [details] [associations]
symbol:helA "putative RNA helicase" species:44689
"Dictyostelium discoideum" [GO:0016818 "hydrolase activity, acting
on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0042254 "ribosome
biogenesis" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0006364 "rRNA processing" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012541 Pfam:PF00270 Pfam:PF00271
Pfam:PF08147 ProDom:PD024971 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 dictyBase:DDB_G0292992 GO:GO:0005524
GenomeReviews:CM000155_GR GO:GO:0005730 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
EMBL:AAFI02000199 KO:K14808 HSSP:P10081 EMBL:X81822
RefSeq:XP_629281.1 ProteinModelPortal:Q54CD8 STRING:Q54CD8
EnsemblProtists:DDB0215372 GeneID:8629004 KEGG:ddi:DDB_G0292992
OMA:RLPKDGH ProtClustDB:CLSZ2429315 Uniprot:Q54CD8
Length = 1091
Score = 291 (107.5 bits), Expect = 4.3e-31, Sum P(3) = 4.3e-31
Identities = 77/213 (36%), Positives = 117/213 (54%)
Query: 31 LGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFN 90
+ L L+ A+ KKG PT IQ+ SIP+IL+G D+V A+TGSGKT A+++P++ +L +
Sbjct: 235 MDLTKNLLKAILKKGFNVPTPIQRKSIPMILDGHDIVGMARTGSGKTGAFVIPMIQKLGD 294
Query: 91 ESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAAL 150
S+ + A++L PTREL Q + V + +G QL+ + + D L
Sbjct: 295 HSTT---VGVRAVILSPTRELAIQTFKVVK---DFSQG-TQLRTILIVGGDSMEDQFTDL 347
Query: 151 AGPPDIVIATPG-CMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVI 209
A PDI+IATPG M L TG+ SK ++ +V DEAD L G+ + L + + +
Sbjct: 348 ARNPDIIIATPGRLMHHLLETGMSLSK-----VQYIVFDEADRLFEMGFNEQLTEILSKL 402
Query: 210 PRGCQCLLMSATSSSDVDKLKKLILHNPYILTL 242
Q LL SAT S + + L+NP ++ L
Sbjct: 403 SENRQTLLFSATLPSLLVDFVRAGLNNPKLINL 435
Score = 125 (49.1 bits), Expect = 4.3e-31, Sum P(3) = 4.3e-31
Identities = 24/59 (40%), Positives = 36/59 (61%)
Query: 378 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVG 436
RGID + VINF+ P ++HR+GR RA +G + SLVSPDE+ ++ ++G
Sbjct: 559 RGIDIPLLDNVINFDFPPKEKIFIHRVGRVARAGRSGIAYSLVSPDEVPYMIDLHLYLG 617
Score = 51 (23.0 bits), Expect = 4.3e-31, Sum P(3) = 4.3e-31
Identities = 17/61 (27%), Positives = 30/61 (49%)
Query: 283 QKKA--LIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIAT 340
QKK+ +IF +T + + LE+ GI S ++ L +R L +F + ++ T
Sbjct: 495 QKKSSTIIFVSTKYHVEFIHILLERAGIASTYIHGYLDPVARKINLAKFRSHQVGVMVVT 554
Query: 341 D 341
D
Sbjct: 555 D 555
Score = 50 (22.7 bits), Expect = 0.00030, Sum P(2) = 0.00030
Identities = 16/61 (26%), Positives = 33/61 (54%)
Query: 314 NAELPQNSRL-HILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKK-HPKAKLD 371
N E+ NS + ++FN+ ++ DD + +K ++ D++KSKK + K +++
Sbjct: 145 NDEVIDNSNFDNNGDQFNSEDEEFY---DDEKQAKKSNKNKNADADNKKSKKSNKKEEIE 201
Query: 372 S 372
S
Sbjct: 202 S 202
Score = 41 (19.5 bits), Expect = 2.1e-22, Sum P(3) = 2.1e-22
Identities = 9/27 (33%), Positives = 14/27 (51%)
Query: 347 EKDQSDEGGHVDSRKSKKHPKAKLDSE 373
E D DE G D + +++ K + D E
Sbjct: 827 ENDDDDEEGENDDDEEEENEKDEDDEE 853
Score = 39 (18.8 bits), Expect = 3.3e-22, Sum P(3) = 3.3e-22
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 341 DDTQTKEKDQSDEGGHVDSRKSK 363
D+ + EKD+ DE D K+K
Sbjct: 840 DEEEENEKDEDDEE---DENKNK 859
Score = 38 (18.4 bits), Expect = 4.2e-22, Sum P(3) = 4.2e-22
Identities = 7/16 (43%), Positives = 11/16 (68%)
Query: 429 EEIKSFVGDDENEDSN 444
++IK DDEN+D +
Sbjct: 817 KDIKMNENDDENDDDD 832
>UNIPROTKB|P54824 [details] [associations]
symbol:ddx6 "ATP-dependent RNA helicase ddx6" species:8355
"Xenopus laevis" [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0030529 "ribonucleoprotein complex" evidence=IPI]
[GO:0005654 "nucleoplasm" evidence=IDA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0007275
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0003723
GO:GO:0030529 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 KO:K12614 InterPro:IPR014014 PROSITE:PS51195
HOVERGEN:HBG106685 CTD:1656 EMBL:X92421 EMBL:BC170228 EMBL:BC170230
RefSeq:NP_001083721.1 UniGene:Xl.157 IntAct:P54824 PRIDE:P54824
GeneID:399080 KEGG:xla:399080 Xenbase:XB-GENE-922237 Uniprot:P54824
Length = 481
Score = 285 (105.4 bits), Expect = 4.3e-31, Sum P(2) = 4.3e-31
Identities = 80/212 (37%), Positives = 115/212 (54%)
Query: 33 LDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNES 92
L L+ + + G +KP+ IQ+ SIP+ L G+D++ARAK G+GK+ AYL+PLL RL
Sbjct: 102 LKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERL---- 157
Query: 93 SPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAALAG 152
K A+V+VPTREL QV S++ I++ K KV+ T D L
Sbjct: 158 -DLKKDCIQAMVIVPTRELALQV-SQIC--IQVSKHMGGAKVMATTGGTNLRDDIMRLDD 213
Query: 153 PPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRG 212
+VIATPG + + GV + D ++++VLDEAD LLS + ++ + +P+
Sbjct: 214 TVHVVIATPGRILDLIKKGVAKV----DHIQMIVLDEADKLLSQDFMQIMEDIIMTLPKN 269
Query: 213 CQCLLMSATSSSDVDKLKKLILHNPYILTLPE 244
Q LL SAT V K L L PY + L E
Sbjct: 270 RQILLYSATFPLSVQKFMTLHLQKPYEINLME 301
Score = 222 (83.2 bits), Expect = 1.4e-23, Sum P(2) = 1.4e-23
Identities = 72/240 (30%), Positives = 112/240 (46%)
Query: 102 ALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATP 161
A+V+VPTREL QV S++ I++ K KV+ T D L +VIATP
Sbjct: 166 AMVIVPTRELALQV-SQIC--IQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATP 222
Query: 162 GCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSAT 221
G + + GV + D ++++VLDEAD LLS + ++ + +P+ Q LL SAT
Sbjct: 223 GRILDLIKKGVAKV----DHIQMIVLDEADKLLSQDFMQIMEDIIMTLPKNRQILLYSAT 278
Query: 222 SSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKXXXXXXXXXXXX 281
V K L L PY + L E E+ K V Q++ +ER K
Sbjct: 279 FPLSVQKFMTLHLQKPYEINLME------ELTLKGVTQYYAYVTERQKVHCLNTLFSRLQ 332
Query: 282 VQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATD 341
+ + ++IF N+ L + + G ++A++ Q R + +F GL L+ TD
Sbjct: 333 INQ-SIIFCNSSQRVELLAKKISQLGYSCFYIHAKMRQEHRNRVFHDFRNGLCRNLVCTD 391
Score = 123 (48.4 bits), Expect = 4.3e-31, Sum P(2) = 4.3e-31
Identities = 24/61 (39%), Positives = 41/61 (67%)
Query: 378 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGD 437
RGID + V+ VINF+ P+ A Y+HRIGR+GR + G +++L++ D+ + I+ +G
Sbjct: 395 RGIDIQAVNVVINFDFPKLAETYLHRIGRSGRFGHLGLAINLITYDDRFNLKSIEEQLGT 454
Query: 438 D 438
+
Sbjct: 455 E 455
>UNIPROTKB|A4RN46 [details] [associations]
symbol:PRP5 "Pre-mRNA-processing ATP-dependent RNA helicase
PRP5" species:242507 "Magnaporthe oryzae 70-15" [GO:0043581
"mycelium development" evidence=IEP] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0008380 GO:GO:0006397 GO:GO:0003676
GO:GO:0043581 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
EMBL:CM001232 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 OrthoDB:EOG40CMR1 RefSeq:XP_003713486.1
ProteinModelPortal:A4RN46 EnsemblFungi:MGG_15532T0 GeneID:12987087
KEGG:mgr:MGG_15532 Uniprot:A4RN46
Length = 1012
Score = 288 (106.4 bits), Expect = 4.6e-31, Sum P(2) = 4.6e-31
Identities = 93/312 (29%), Positives = 141/312 (45%)
Query: 32 GLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNE 91
GL ++ + K KPT IQ ++P+I+ G+DVV AKTGSGKT A+LLP+ + ++
Sbjct: 384 GLTRPILDVIAKLEYDKPTAIQMQALPVIMSGRDVVGVAKTGSGKTMAFLLPMFRHIKDQ 443
Query: 92 SSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAALA 151
K P L+L PTREL Q++ + ++ + L+ V P D A L
Sbjct: 444 EPVKDNEGPIGLILTPTRELAVQIFRDCKPFLKT----LGLRAVCAYGGPPIKDQIADLK 499
Query: 152 GPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPR 211
+IV+AT G M L+ + S + I VLDEAD + G+E + + A +
Sbjct: 500 RGAEIVVATTGRMIDLLAANQGRVVSLRRTTYI-VLDEADRMFDMGFEPQVMKIFANVRP 558
Query: 212 GCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKXX 271
Q +L SAT +D L K +L NP + EVG V+ + Q E+ K
Sbjct: 559 DRQTVLFSATMPKIMDALVKKVLKNPVEI---EVGG--KSVVASEITQIVEIRDEKSKFN 613
Query: 272 XXXXXXXXXXVQK---KALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEE 328
++LIF + A L L + G L+ Q R + +
Sbjct: 614 RLLELLGELYKDDDDVRSLIFVERQEKADELLRELLRKGYGCMSLHGGKDQVDRDSTISD 673
Query: 329 FNAGLFDYLIAT 340
F +G+ +IAT
Sbjct: 674 FKSGVCPVMIAT 685
Score = 135 (52.6 bits), Expect = 4.6e-31, Sum P(2) = 4.6e-31
Identities = 30/77 (38%), Positives = 42/77 (54%)
Query: 348 KDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRT 407
KDQ D + KS P S RG+D K + V+N++ P + YVHR GRT
Sbjct: 662 KDQVDRDSTISDFKSGVCPVMIATSV--AARGLDVKQLKLVVNYDAPNHLEDYVHRAGRT 719
Query: 408 GRAYNTGASVSLVSPDE 424
GRA NTG +V+ V+ ++
Sbjct: 720 GRAGNTGTAVTFVTEEQ 736
>FB|FBgn0052344 [details] [associations]
symbol:CG32344 species:7227 "Drosophila melanogaster"
[GO:0004386 "helicase activity" evidence=ISS] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0005634
"nucleus" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0022008 "neurogenesis"
evidence=IMP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012541 Pfam:PF00270 Pfam:PF00271
Pfam:PF08147 ProDom:PD024971 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 EMBL:AE014296
GO:GO:0022008 GO:GO:0006200 GO:GO:0003723 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 KO:K14808
GeneTree:ENSGT00550000075100 HSSP:P10081 EMBL:AY075397
RefSeq:NP_612028.4 UniGene:Dm.796 SMR:Q8SY39 IntAct:Q8SY39
STRING:Q8SY39 EnsemblMetazoa:FBtr0072576 GeneID:326208
KEGG:dme:Dmel_CG32344 UCSC:CG32344-RA FlyBase:FBgn0052344
InParanoid:Q8SY39 OMA:NANDEMS OrthoDB:EOG40CFZ4 GenomeRNAi:326208
NextBio:847633 Uniprot:Q8SY39
Length = 827
Score = 299 (110.3 bits), Expect = 4.7e-31, Sum P(2) = 4.7e-31
Identities = 92/312 (29%), Positives = 148/312 (47%)
Query: 31 LGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFN 90
+GL L+ + K+G + PT IQ+ +IPLILEG+DVVA AKTGSGKT +L+PL +L
Sbjct: 44 MGLGFELIKGITKRGYKVPTPIQRKTIPLILEGRDVVAMAKTGSGKTACFLIPLFEKLQR 103
Query: 91 ESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAAL 150
K AL+L PTREL Q Y + L ++LK + + +A+
Sbjct: 104 REPTKGA---RALILSPTRELAVQTYKFIKELGRF----MELKSILVLGGDSMDSQFSAI 156
Query: 151 AGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIP 210
PD+++ATPG + L V + S++ +V DEAD L G+ + L +P
Sbjct: 157 HTCPDVIVATPG---RFLHLCVEMDLKLN-SIEYVVFDEADRLFEMGFGEQLNETLHRLP 212
Query: 211 RGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKX 270
Q ++ SAT + + + L++P ++ L DV+ + +P + ++ C D+
Sbjct: 213 SSRQTVMFSATLPKLLVEFARAGLNDPVLIRL----DVESK-LPDALALKFLYCRPDDRY 267
Query: 271 XXXXXXXXXXX-VQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEF 329
VQ + ++F T + L + GI +A + + L +R +F
Sbjct: 268 TALVVLLKYVIPVQSQTVVFAGTQHHVELISYILTEAGISNASVYSSLDPAARKINTAKF 327
Query: 330 NAGLFDYLIATD 341
LI TD
Sbjct: 328 VNKKVSVLIVTD 339
Score = 120 (47.3 bits), Expect = 4.7e-31, Sum P(2) = 4.7e-31
Identities = 30/94 (31%), Positives = 46/94 (48%)
Query: 378 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGD 437
RGID ++ V+N P +VHR+GR RA TG + S+VS D+ ++ F+
Sbjct: 343 RGIDIPSLDFVVNLHFPGKPKLFVHRVGRCARAGRTGTAYSIVSTDDTAHLLDLHLFLNR 402
Query: 438 DEN-EDSNIIAPFPLLAQNAVESLRYRAEDVAKS 470
N DS+ + P Q+ +E D+ KS
Sbjct: 403 PFNIHDSSALGTIP---QDLLEEEHLTVTDIKKS 433
>UNIPROTKB|E1BDM8 [details] [associations]
symbol:DDX6 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0033962 "cytoplasmic mRNA processing body assembly"
evidence=IEA] [GO:0016442 "RNA-induced silencing complex"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0000932 "cytoplasmic mRNA processing body"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GO:GO:0000932 GO:GO:0016442 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0010494 GO:GO:0033962
GO:GO:0008026 GeneTree:ENSGT00530000063986 KO:K12614 OMA:YSHARMK
InterPro:IPR014014 PROSITE:PS51195 CTD:1656 EMBL:DAAA02040478
EMBL:DAAA02040479 IPI:IPI00697295 RefSeq:NP_001137339.1
UniGene:Bt.12357 PRIDE:E1BDM8 Ensembl:ENSBTAT00000011952
GeneID:513906 KEGG:bta:513906 NextBio:20871085 Uniprot:E1BDM8
Length = 483
Score = 281 (104.0 bits), Expect = 6.9e-31, Sum P(2) = 6.9e-31
Identities = 79/212 (37%), Positives = 115/212 (54%)
Query: 33 LDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNES 92
L L+ + + G +KP+ IQ+ SIP+ L G+D++ARAK G+GK+ AYL+PLL RL
Sbjct: 103 LKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERL---D 159
Query: 93 SPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAALAG 152
K + A+V+VPTREL QV S++ I++ K KV+ T D L
Sbjct: 160 LKKDNIQ--AMVIVPTRELALQV-SQIC--IQVSKHMGGAKVMATTGGTNLRDDIMRLDD 214
Query: 153 PPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRG 212
+VIATPG + + GV + D ++++VLDEAD LLS + ++ + +P+
Sbjct: 215 TVHVVIATPGRILDLIKKGVAKV----DHVQMIVLDEADKLLSQDFVQIMEDIILTLPKN 270
Query: 213 CQCLLMSATSSSDVDKLKKLILHNPYILTLPE 244
Q LL SAT V K L PY + L E
Sbjct: 271 RQILLYSATFPLSVQKFMNSHLQKPYEINLME 302
Score = 216 (81.1 bits), Expect = 3.3e-23, Sum P(2) = 3.3e-23
Identities = 71/240 (29%), Positives = 111/240 (46%)
Query: 102 ALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATP 161
A+V+VPTREL QV S++ I++ K KV+ T D L +VIATP
Sbjct: 167 AMVIVPTRELALQV-SQIC--IQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATP 223
Query: 162 GCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSAT 221
G + + GV + D ++++VLDEAD LLS + ++ + +P+ Q LL SAT
Sbjct: 224 GRILDLIKKGVAKV----DHVQMIVLDEADKLLSQDFVQIMEDIILTLPKNRQILLYSAT 279
Query: 222 SSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKXXXXXXXXXXXX 281
V K L PY + L E E+ K V Q++ +ER K
Sbjct: 280 FPLSVQKFMNSHLQKPYEINLME------ELTLKGVTQYYAYVTERQKVHCLNTLFSRLQ 333
Query: 282 VQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATD 341
+ + ++IF N+ L + + G ++A++ Q R + +F GL L+ TD
Sbjct: 334 INQ-SIIFCNSSQRVELLAKKISQLGYSCFYIHAKMRQEHRNRVFHDFRNGLCRNLVCTD 392
Score = 126 (49.4 bits), Expect = 6.9e-31, Sum P(2) = 6.9e-31
Identities = 30/90 (33%), Positives = 50/90 (55%)
Query: 378 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGD 437
RGID + V+ VINF+ P+ A Y+HRIGR+GR + G +++L++ D+ + I+ +G
Sbjct: 396 RGIDIQAVNVVINFDFPKLAETYLHRIGRSGRFGHLGLAINLITYDDRFNLKSIEEQLGT 455
Query: 438 DENEDSNIIAPFPLLAQNAVESLRYRAEDV 467
+ I P P ++ Y +E V
Sbjct: 456 E-------IKPIPSNIDKSLYVAEYHSEPV 478
>UNIPROTKB|E2RR01 [details] [associations]
symbol:DDX6 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0033962 "cytoplasmic mRNA processing body
assembly" evidence=IEA] [GO:0016442 "RNA-induced silencing complex"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0000932 "cytoplasmic mRNA processing body"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GO:GO:0000932 GO:GO:0016442 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0010494 GO:GO:0033962
GO:GO:0008026 GeneTree:ENSGT00530000063986 KO:K12614 OMA:YSHARMK
InterPro:IPR014014 PROSITE:PS51195 CTD:1656 EMBL:AAEX03003444
RefSeq:XP_849975.1 Ensembl:ENSCAFT00000019743 GeneID:479414
KEGG:cfa:479414 NextBio:20854600 Uniprot:E2RR01
Length = 483
Score = 281 (104.0 bits), Expect = 6.9e-31, Sum P(2) = 6.9e-31
Identities = 79/212 (37%), Positives = 115/212 (54%)
Query: 33 LDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNES 92
L L+ + + G +KP+ IQ+ SIP+ L G+D++ARAK G+GK+ AYL+PLL RL
Sbjct: 103 LKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERL---D 159
Query: 93 SPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAALAG 152
K + A+V+VPTREL QV S++ I++ K KV+ T D L
Sbjct: 160 LKKDNIQ--AMVIVPTRELALQV-SQIC--IQVSKHMGGAKVMATTGGTNLRDDIMRLDD 214
Query: 153 PPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRG 212
+VIATPG + + GV + D ++++VLDEAD LLS + ++ + +P+
Sbjct: 215 TVHVVIATPGRILDLIKKGVAKV----DHVQMIVLDEADKLLSQDFVQIMEDIILTLPKN 270
Query: 213 CQCLLMSATSSSDVDKLKKLILHNPYILTLPE 244
Q LL SAT V K L PY + L E
Sbjct: 271 RQILLYSATFPLSVQKFMNSHLQKPYEINLME 302
Score = 216 (81.1 bits), Expect = 3.3e-23, Sum P(2) = 3.3e-23
Identities = 71/240 (29%), Positives = 111/240 (46%)
Query: 102 ALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATP 161
A+V+VPTREL QV S++ I++ K KV+ T D L +VIATP
Sbjct: 167 AMVIVPTRELALQV-SQIC--IQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATP 223
Query: 162 GCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSAT 221
G + + GV + D ++++VLDEAD LLS + ++ + +P+ Q LL SAT
Sbjct: 224 GRILDLIKKGVAKV----DHVQMIVLDEADKLLSQDFVQIMEDIILTLPKNRQILLYSAT 279
Query: 222 SSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKXXXXXXXXXXXX 281
V K L PY + L E E+ K V Q++ +ER K
Sbjct: 280 FPLSVQKFMNSHLQKPYEINLME------ELTLKGVTQYYAYVTERQKVHCLNTLFSRLQ 333
Query: 282 VQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATD 341
+ + ++IF N+ L + + G ++A++ Q R + +F GL L+ TD
Sbjct: 334 INQ-SIIFCNSSQRVELLAKKISQLGYSCFYIHAKMRQEHRNRVFHDFRNGLCRNLVCTD 392
Score = 126 (49.4 bits), Expect = 6.9e-31, Sum P(2) = 6.9e-31
Identities = 30/90 (33%), Positives = 50/90 (55%)
Query: 378 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGD 437
RGID + V+ VINF+ P+ A Y+HRIGR+GR + G +++L++ D+ + I+ +G
Sbjct: 396 RGIDIQAVNVVINFDFPKLAETYLHRIGRSGRFGHLGLAINLITYDDRFNLKSIEEQLGT 455
Query: 438 DENEDSNIIAPFPLLAQNAVESLRYRAEDV 467
+ I P P ++ Y +E V
Sbjct: 456 E-------IKPIPSNIDKSLYVAEYHSEPV 478
>UNIPROTKB|P26196 [details] [associations]
symbol:DDX6 "Probable ATP-dependent RNA helicase DDX6"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0010494 "cytoplasmic stress granule"
evidence=IDA] [GO:0000932 "cytoplasmic mRNA processing body"
evidence=IDA] [GO:0004386 "helicase activity" evidence=TAS]
[GO:0003724 "RNA helicase activity" evidence=TAS] [GO:0016442
"RNA-induced silencing complex" evidence=IDA] [GO:0033962
"cytoplasmic mRNA processing body assembly" evidence=IDA]
[GO:0000288 "nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=TAS] [GO:0005829 "cytosol"
evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0016070 "RNA metabolic process" evidence=TAS] [GO:0016071 "mRNA
metabolic process" evidence=TAS] [GO:0043928 "exonucleolytic
nuclear-transcribed mRNA catabolic process involved in
deadenylation-dependent decay" evidence=TAS] Reactome:REACT_71
Reactome:REACT_21257 InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005829 GO:GO:0005524
GO:GO:0010467 GO:GO:0003723 GO:GO:0000932 GO:GO:0016442
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0010494
GO:GO:0033962 GO:GO:0008026 eggNOG:COG0513 HOGENOM:HOG000268797
KO:K12614 OMA:YSHARMK GO:GO:0003724 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0043928 HOVERGEN:HBG106685 OrthoDB:EOG4J1182
EMBL:Z11685 EMBL:BC065007 EMBL:D17532 IPI:IPI00030320 PIR:S22651
RefSeq:NP_001244120.1 RefSeq:NP_004388.2 UniGene:Hs.408461 PDB:1VEC
PDB:2WAX PDB:2WAY PDBsum:1VEC PDBsum:2WAX PDBsum:2WAY
ProteinModelPortal:P26196 SMR:P26196 DIP:DIP-29195N IntAct:P26196
STRING:P26196 PhosphoSite:P26196 DMDM:116241327
DOSAC-COBS-2DPAGE:P26196 PaxDb:P26196 PeptideAtlas:P26196
PRIDE:P26196 DNASU:1656 Ensembl:ENST00000264018
Ensembl:ENST00000526070 Ensembl:ENST00000534980 GeneID:1656
KEGG:hsa:1656 UCSC:uc001pub.2 CTD:1656 GeneCards:GC11M118654
HGNC:HGNC:2747 HPA:CAB004668 HPA:HPA024201 HPA:HPA026644 MIM:600326
neXtProt:NX_P26196 PharmGKB:PA27229 InParanoid:P26196
PhylomeDB:P26196 ChiTaRS:DDX6 EvolutionaryTrace:P26196
GenomeRNAi:1656 NextBio:6820 ArrayExpress:P26196 Bgee:P26196
CleanEx:HS_DDX6 Genevestigator:P26196 GermOnline:ENSG00000110367
Uniprot:P26196
Length = 483
Score = 281 (104.0 bits), Expect = 6.9e-31, Sum P(2) = 6.9e-31
Identities = 79/212 (37%), Positives = 115/212 (54%)
Query: 33 LDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNES 92
L L+ + + G +KP+ IQ+ SIP+ L G+D++ARAK G+GK+ AYL+PLL RL
Sbjct: 103 LKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERL---D 159
Query: 93 SPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAALAG 152
K + A+V+VPTREL QV S++ I++ K KV+ T D L
Sbjct: 160 LKKDNIQ--AMVIVPTRELALQV-SQIC--IQVSKHMGGAKVMATTGGTNLRDDIMRLDD 214
Query: 153 PPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRG 212
+VIATPG + + GV + D ++++VLDEAD LLS + ++ + +P+
Sbjct: 215 TVHVVIATPGRILDLIKKGVAKV----DHVQMIVLDEADKLLSQDFVQIMEDIILTLPKN 270
Query: 213 CQCLLMSATSSSDVDKLKKLILHNPYILTLPE 244
Q LL SAT V K L PY + L E
Sbjct: 271 RQILLYSATFPLSVQKFMNSHLQKPYEINLME 302
Score = 216 (81.1 bits), Expect = 3.3e-23, Sum P(2) = 3.3e-23
Identities = 71/240 (29%), Positives = 111/240 (46%)
Query: 102 ALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATP 161
A+V+VPTREL QV S++ I++ K KV+ T D L +VIATP
Sbjct: 167 AMVIVPTRELALQV-SQIC--IQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATP 223
Query: 162 GCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSAT 221
G + + GV + D ++++VLDEAD LLS + ++ + +P+ Q LL SAT
Sbjct: 224 GRILDLIKKGVAKV----DHVQMIVLDEADKLLSQDFVQIMEDIILTLPKNRQILLYSAT 279
Query: 222 SSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKXXXXXXXXXXXX 281
V K L PY + L E E+ K V Q++ +ER K
Sbjct: 280 FPLSVQKFMNSHLQKPYEINLME------ELTLKGVTQYYAYVTERQKVHCLNTLFSRLQ 333
Query: 282 VQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATD 341
+ + ++IF N+ L + + G ++A++ Q R + +F GL L+ TD
Sbjct: 334 INQ-SIIFCNSSQRVELLAKKISQLGYSCFYIHAKMRQEHRNRVFHDFRNGLCRNLVCTD 392
Score = 126 (49.4 bits), Expect = 6.9e-31, Sum P(2) = 6.9e-31
Identities = 30/90 (33%), Positives = 50/90 (55%)
Query: 378 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGD 437
RGID + V+ VINF+ P+ A Y+HRIGR+GR + G +++L++ D+ + I+ +G
Sbjct: 396 RGIDIQAVNVVINFDFPKLAETYLHRIGRSGRFGHLGLAINLITYDDRFNLKSIEEQLGT 455
Query: 438 DENEDSNIIAPFPLLAQNAVESLRYRAEDV 467
+ I P P ++ Y +E V
Sbjct: 456 E-------IKPIPSNIDKSLYVAEYHSEPV 478
>UNIPROTKB|F1SAJ5 [details] [associations]
symbol:DDX6 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0033962 "cytoplasmic mRNA processing body assembly"
evidence=IEA] [GO:0016442 "RNA-induced silencing complex"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0000932 "cytoplasmic mRNA processing body"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GO:GO:0000932 GO:GO:0016442 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0010494 GO:GO:0033962
GO:GO:0008026 GeneTree:ENSGT00530000063986 KO:K12614 OMA:YSHARMK
InterPro:IPR014014 PROSITE:PS51195 CTD:1656 EMBL:FP089499
RefSeq:XP_003129962.1 RefSeq:XP_003357372.1 UniGene:Ssc.97711
Ensembl:ENSSSCT00000016463 GeneID:100515499 KEGG:ssc:100515499
Uniprot:F1SAJ5
Length = 483
Score = 281 (104.0 bits), Expect = 6.9e-31, Sum P(2) = 6.9e-31
Identities = 79/212 (37%), Positives = 115/212 (54%)
Query: 33 LDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNES 92
L L+ + + G +KP+ IQ+ SIP+ L G+D++ARAK G+GK+ AYL+PLL RL
Sbjct: 103 LKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERL---D 159
Query: 93 SPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAALAG 152
K + A+V+VPTREL QV S++ I++ K KV+ T D L
Sbjct: 160 LKKDNIQ--AMVIVPTRELALQV-SQIC--IQVSKHMGGAKVMATTGGTNLRDDIMRLDD 214
Query: 153 PPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRG 212
+VIATPG + + GV + D ++++VLDEAD LLS + ++ + +P+
Sbjct: 215 TVHVVIATPGRILDLIKKGVAKV----DHVQMIVLDEADKLLSQDFVQIMEDIILTLPKN 270
Query: 213 CQCLLMSATSSSDVDKLKKLILHNPYILTLPE 244
Q LL SAT V K L PY + L E
Sbjct: 271 RQILLYSATFPLSVQKFMNSHLQKPYEINLME 302
Score = 216 (81.1 bits), Expect = 3.3e-23, Sum P(2) = 3.3e-23
Identities = 71/240 (29%), Positives = 111/240 (46%)
Query: 102 ALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATP 161
A+V+VPTREL QV S++ I++ K KV+ T D L +VIATP
Sbjct: 167 AMVIVPTRELALQV-SQIC--IQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATP 223
Query: 162 GCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSAT 221
G + + GV + D ++++VLDEAD LLS + ++ + +P+ Q LL SAT
Sbjct: 224 GRILDLIKKGVAKV----DHVQMIVLDEADKLLSQDFVQIMEDIILTLPKNRQILLYSAT 279
Query: 222 SSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKXXXXXXXXXXXX 281
V K L PY + L E E+ K V Q++ +ER K
Sbjct: 280 FPLSVQKFMNSHLQKPYEINLME------ELTLKGVTQYYAYVTERQKVHCLNTLFSRLQ 333
Query: 282 VQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATD 341
+ + ++IF N+ L + + G ++A++ Q R + +F GL L+ TD
Sbjct: 334 INQ-SIIFCNSSQRVELLAKKISQLGYSCFYIHAKMRQEHRNRVFHDFRNGLCRNLVCTD 392
Score = 126 (49.4 bits), Expect = 6.9e-31, Sum P(2) = 6.9e-31
Identities = 30/90 (33%), Positives = 50/90 (55%)
Query: 378 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGD 437
RGID + V+ VINF+ P+ A Y+HRIGR+GR + G +++L++ D+ + I+ +G
Sbjct: 396 RGIDIQAVNVVINFDFPKLAETYLHRIGRSGRFGHLGLAINLITYDDRFNLKSIEEQLGT 455
Query: 438 DENEDSNIIAPFPLLAQNAVESLRYRAEDV 467
+ I P P ++ Y +E V
Sbjct: 456 E-------IKPIPSNIDKSLYVAEYHSEPV 478
>POMBASE|SPAC31A2.07c [details] [associations]
symbol:dbp10 "ATP-dependent RNA helicase Dbp10
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISO] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=ISO;IDA] [GO:0006364 "rRNA processing" evidence=IEA]
[GO:0042254 "ribosome biogenesis" evidence=ISO] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012541
Pfam:PF00270 Pfam:PF00271 Pfam:PF08147 ProDom:PD024971
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 PomBase:SPAC31A2.07c
GO:GO:0005524 EMBL:CU329670 GO:GO:0005730 GenomeReviews:CU329670_GR
GO:GO:0042254 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006364 GO:GO:0004004 InterPro:IPR014014
PROSITE:PS51195 KO:K14808 HOGENOM:HOG000246455 OrthoDB:EOG4JWZP1
EMBL:AB027882 PIR:S59645 RefSeq:NP_592919.1
ProteinModelPortal:Q09719 STRING:Q09719 EnsemblFungi:SPAC31A2.07c.1
GeneID:2543197 KEGG:spo:SPAC31A2.07c OMA:FYIPYRP NextBio:20804220
Uniprot:Q09719
Length = 848
Score = 294 (108.6 bits), Expect = 7.5e-31, Sum P(3) = 7.5e-31
Identities = 86/242 (35%), Positives = 129/242 (53%)
Query: 31 LGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFN 90
+GL+ L+ A+ KKG + PT IQ+ +IPL+LEG+DVV A+TGSGKT A+++P++ L
Sbjct: 74 MGLNQTLLRAIFKKGFKAPTPIQRKTIPLLLEGRDVVGMARTGSGKTAAFVIPMIEHL-- 131
Query: 91 ESSPKSKLAPA---ALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLR 147
KS LA + AL+L P REL Q V + + KG L+ V + + +
Sbjct: 132 ----KSTLANSNTRALILSPNRELALQT---VKVVKDFSKG-TDLRSVAIVGGVSLEEQF 183
Query: 148 AALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSA 207
+ L+G PDIV+ATPG + L V S S++ +V DEAD L G+ L +
Sbjct: 184 SLLSGKPDIVVATPG---RFLHLKVEMKLELS-SIEYVVFDEADRLFEMGFAAQLTEILH 239
Query: 208 VIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFW-ISCSE 266
+P Q LL SAT + K L +P ++ L DV+ +V F+ + +E
Sbjct: 240 ALPTSRQTLLFSATLPRTLVDFAKAGLQDPVLVRL----DVESKVSADLQSAFFSVKTAE 295
Query: 267 RD 268
R+
Sbjct: 296 RE 297
Score = 113 (44.8 bits), Expect = 7.5e-31, Sum P(3) = 7.5e-31
Identities = 35/121 (28%), Positives = 55/121 (45%)
Query: 378 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGD 437
RGID + VIN++ P +VHR+GRT RA TG + SLV ++ +++ F+
Sbjct: 408 RGIDIPLLANVINYDFPPQPKVFVHRVGRTARAGRTGWAYSLVRAEDAGYLLDLQLFLNR 467
Query: 438 DENEDSNII---APFPLLAQNAVESLRYR-AEDVAKSVTKIAVRESRAQDLRNEILNSEK 493
S + + Q + SL ++ + V +I R+ Q L N EK
Sbjct: 468 PLVTSSKQVKTDSDCDFTKQIVLGSLPQELVAELLEWVQRIVSRDVELQQLSNVAARGEK 527
Query: 494 L 494
L
Sbjct: 528 L 528
Score = 52 (23.4 bits), Expect = 7.5e-31, Sum P(3) = 7.5e-31
Identities = 22/103 (21%), Positives = 39/103 (37%)
Query: 239 ILTLPEVGDVKDEVIPKNVQQFWISCSERDKXXXXXXXXXXXXVQKKALIFTNTIDMAFR 298
I+ LP +KD V P+ + + +R + L+F T
Sbjct: 307 IIKLP----LKDNVRPREIGNV-NNPKKRKRALELALKGSESGSPDSTLVFVPTKHHVEY 361
Query: 299 LKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATD 341
+ L + G + + L Q +RL+ + F G + L+ TD
Sbjct: 362 VSELLVQAGYSVSKIYGSLDQEARLNEINNFRLGKTNLLVVTD 404
>UNIPROTKB|F1P0H1 [details] [associations]
symbol:DDX42 "ATP-dependent RNA helicase DDX42"
species:9031 "Gallus gallus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00610000086076 EMBL:AADN02056764
IPI:IPI00819332 Ensembl:ENSGALT00000040437 ArrayExpress:F1P0H1
Uniprot:F1P0H1
Length = 703
Score = 297 (109.6 bits), Expect = 8.3e-31, Sum P(2) = 8.3e-31
Identities = 91/320 (28%), Positives = 155/320 (48%)
Query: 32 GLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNE 91
G D +L+H + K +PT IQ +P+ + G+D++ AKTGSGKT A++ P+L + ++
Sbjct: 254 GFDEQLMHQIRKSEYTQPTPIQCQGVPVAMSGRDMIGIAKTGSGKTAAFIWPMLIHIMDQ 313
Query: 92 SSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCK--GQV-QLKVVQLTSSMPASDLRA 148
+ P A+++ PTRELCQQ++SE CK G+ L+ V + +
Sbjct: 314 KELEPGDGPIAVIVCPTRELCQQIHSE-------CKRFGKAYNLRSVAVYGGGSMWEQAK 366
Query: 149 ALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAV 208
AL +IV+ TPG L V + + + LV DEAD + G+E ++++++
Sbjct: 367 ALQEGAEIVVCTPGR----LIDHVKKKATNLQRVTYLVFDEADRMFDMGFEYQVRSIASH 422
Query: 209 IPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKD------EVIPKNVQQF-W 261
+ Q LL SAT ++KL + IL +P + ++G+ + E+ P ++ W
Sbjct: 423 VRPDRQTLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEIFPSGPSKWNW 482
Query: 262 ISCSERDKXXXXXXXXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNS 321
++ R V KKA N ++A LK G+ L+ ++ Q+
Sbjct: 483 LT---RRLVEFTSSGSVLLFVTKKA----NAEELANNLKQEDHNLGL----LHGDMDQSE 531
Query: 322 RLHILEEFNAGLFDYLIATD 341
R ++ EF L+ATD
Sbjct: 532 RNKVISEFKKKGIPILVATD 551
Score = 117 (46.2 bits), Expect = 8.3e-31, Sum P(2) = 8.3e-31
Identities = 27/101 (26%), Positives = 54/101 (53%)
Query: 347 EKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGR 406
+ DQS+ + K K P L + RG+D ++ TVIN+++ ++ + HRIGR
Sbjct: 526 DMDQSERNKVISEFKKKGIPI--LVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGR 583
Query: 407 TGRAYNTGASVSLVSPDEMKIFEE-IKSFVGDDENEDSNII 446
TGRA G + +L++P + + +++ G +++ ++
Sbjct: 584 TGRAGEKGVAYTLLTPKDSNFAGDLVRNLEGANQHVSKELL 624
>TIGR_CMR|CPS_1590 [details] [associations]
symbol:CPS_1590 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 RefSeq:YP_268332.1 ProteinModelPortal:Q485D3
STRING:Q485D3 GeneID:3522084 KEGG:cps:CPS_1590 PATRIC:21466379
OMA:AISECGY ProtClustDB:CLSK768209
BioCyc:CPSY167879:GI48-1671-MONOMER Uniprot:Q485D3
Length = 455
Score = 256 (95.2 bits), Expect = 8.4e-31, Sum P(2) = 8.4e-31
Identities = 93/326 (28%), Positives = 158/326 (48%)
Query: 31 LGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLF- 89
+GL L+ A+ G + T IQQ +IP+I +G D++A A+TG+GKT A+ LP+L +
Sbjct: 6 IGLSADLLKAVKACGYKNLTPIQQEAIPVIRQGVDLLASAQTGTGKTAAFSLPILDAIAK 65
Query: 90 ------------NESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLK--VV 135
+E+S + K A + +++ ++V I+ + +K VV
Sbjct: 66 ANHAAKSSTTSTDENSAEEKSASGQAIRALILTPTRELANQVADNIKQFSQYLPIKSGVV 125
Query: 136 QLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLS 195
M AS + G D+++ATPG + + L+ L++ S +K LVLDEAD +L
Sbjct: 126 YGGGKM-ASQTKMLKQGL-DVLVATPGRLLEHLA---LRNVDLSQ-VKFLVLDEADRMLD 179
Query: 196 YGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPK 255
G+ D++ L + Q L+ SAT S V L +L +P +++ + ++ K
Sbjct: 180 MGFLTDIEKLLLAVKHKHQTLMFSATFSDRVKSLANQLLKSPKTISVSKENTTSGKI--K 237
Query: 256 NVQQFWISCSERDKXXXXXXXXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNA 315
+W++ ER + Q L+F T + A L L+ GIK+A+ +
Sbjct: 238 QAV-YWVT-EERKRELLSELIGVNNWQQ--VLVFAGTKESANTLAKELKLDGIKAALCHG 293
Query: 316 ELPQNSRLHILEEFNAGLFDYLIATD 341
+ Q +R LE+F+ G L+ATD
Sbjct: 294 DKTQGARNKALEQFSEGKVRVLVATD 319
Score = 152 (58.6 bits), Expect = 8.4e-31, Sum P(2) = 8.4e-31
Identities = 37/118 (31%), Positives = 63/118 (53%)
Query: 378 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGD 437
RG+D ++ V+NF +P YVHR+GRTGRA +G ++SLVSP + + E I+ +
Sbjct: 323 RGLDIPDLAFVVNFHLPFLPEDYVHRVGRTGRAGKSGTAISLVSPKDERFLENIEQLI-- 380
Query: 438 DENEDSNIIAPFPLLAQNAVESLRYRAEDVAK-SVTKIAVRESRAQDLRNEILNSEKL 494
E + I+AP N +E+ Y+ V + S + + + Q+L + + + L
Sbjct: 381 -ERKFERIVAPG--YEFNRLEASEYQEATVKRDSKNRYRAAQEKNQNLAKKDVKIKSL 435
>UNIPROTKB|F8WDT8 [details] [associations]
symbol:DDX56 "Probable ATP-dependent RNA helicase DDX56"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] InterPro:IPR011545
Pfam:PF00270 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 EMBL:AC004938 HGNC:HGNC:18193 IPI:IPI00925990
ProteinModelPortal:F8WDT8 SMR:F8WDT8 Ensembl:ENST00000446987
ArrayExpress:F8WDT8 Bgee:F8WDT8 Uniprot:F8WDT8
Length = 185
Score = 343 (125.8 bits), Expect = 9.2e-31, P = 9.2e-31
Identities = 78/177 (44%), Positives = 112/177 (63%)
Query: 31 LGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFN 90
+GLD RL+ A+ G +PTLIQ+ +IPL LEGKD++ARA+TGSGKT AY +P+L L +
Sbjct: 12 MGLDPRLLQAVTDLGWSRPTLIQEKAIPLALEGKDLLARARTGSGKTAAYAIPMLQLLLH 71
Query: 91 ESS--PKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRA 148
+ P + A LVLVPT+EL +Q S + L C V +V ++++ + RA
Sbjct: 72 RKATGPVVEQAVRGLVLVPTKELARQAQSMIQQLATYCARDV--RVANVSAAEDSVSQRA 129
Query: 149 ALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKAL 205
L PD+V+ TP + LS S DSL++LV+DEADLL S+G+E++LK+L
Sbjct: 130 VLMEKPDVVVGTPS---RILSHLQQDSLKLRDSLELLVVDEADLLFSFGFEEELKSL 183
>UNIPROTKB|F1NQ09 [details] [associations]
symbol:DDX43 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00660000095174 EMBL:AADN02002507 EMBL:AADN02002508
IPI:IPI00819782 ProteinModelPortal:F1NQ09
Ensembl:ENSGALT00000037063 Uniprot:F1NQ09
Length = 451
Score = 270 (100.1 bits), Expect = 9.2e-31, Sum P(2) = 9.2e-31
Identities = 97/304 (31%), Positives = 140/304 (46%)
Query: 41 LNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLA- 99
+ K G QKPT IQ + P+IL+G D++ A+TG+GKT AYL+P L ++ PK K
Sbjct: 68 IRKTGFQKPTPIQSQAWPIILQGIDLIGIAQTGTGKTLAYLMPGFIHLASQPIPKDKRGG 127
Query: 100 PAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIA 159
P LVL PTREL QV +E + KG + + + + G DIVIA
Sbjct: 128 PGMLVLAPTRELALQVEAECLKYTY--KGFKSICIYG--GGDRKAQINVVTKGV-DIVIA 182
Query: 160 TPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDL-KALSAVIPRGCQCLLM 218
TPG + + KS + LVLDEAD +L G+E + K L V P Q ++M
Sbjct: 183 TPGRLNDLQMNNFINLKSIT----YLVLDEADRMLDMGFEPQIMKILIDVRPDR-QTVMM 237
Query: 219 SATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKXX-XXXXXX 277
SAT V +L K L NP I+ + + V+ K +Q F ++D
Sbjct: 238 SATWPDGVRRLAKSYLRNPMIVYVGTLDLAVSGVVLKYLQ-F-----DKDIFTWKYMQVN 291
Query: 278 XXXXVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYL 337
++F +A + L G+ L+ + Q R L++F G L
Sbjct: 292 AQSFCTDVVVVFVQLHVVADDIASDLGVQGVPVQSLHGDREQCDREQALDDFKKGKVRIL 351
Query: 338 IATD 341
+ATD
Sbjct: 352 VATD 355
Score = 135 (52.6 bits), Expect = 9.2e-31, Sum P(2) = 9.2e-31
Identities = 36/131 (27%), Positives = 67/131 (51%)
Query: 347 EKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGR 406
+++Q D +D K K + + ++ RG+D ++ V NF+ P+N YVHR+GR
Sbjct: 330 DREQCDREQALDDFKKGK-VRILVATDLAS-RGLDVHDITHVFNFDFPRNIEEYVHRVGR 387
Query: 407 TGRAYNTGASVSLVSPDEMKIFEEIKSFVGDDENEDSNIIAPFPLLAQNAVESLRYRAED 466
TGRA TG +V+L++ + K E+ + + + + P L++ + RY+
Sbjct: 388 TGRAGRTGKAVTLITKKDWKAASELIDIL-----QRAKQVVPDELISM----AERYKQHQ 438
Query: 467 VAKSVTKIAVR 477
+ K + K +R
Sbjct: 439 IRKEMEKDILR 449
>UNIPROTKB|Q86XP3 [details] [associations]
symbol:DDX42 "ATP-dependent RNA helicase DDX42"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0015030 "Cajal body"
evidence=IEA] [GO:0016607 "nuclear speck" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0008104 "protein
localization" evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 EMBL:AF083255 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0008104 GO:GO:0016607 GO:GO:0003723
EMBL:CH471109 GO:GO:0015030 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HSSP:P09052 CTD:11325 HOVERGEN:HBG081425 KO:K12835
OrthoDB:EOG47WNN9 EMBL:AB036090 EMBL:AK292908 EMBL:AC015651
EMBL:BC008208 EMBL:BC015505 EMBL:BC078667 EMBL:BC093081
EMBL:AL050096 EMBL:BK000566 IPI:IPI00409671 IPI:IPI00829889
PIR:T08745 RefSeq:NP_031398.2 RefSeq:NP_987095.1 UniGene:Hs.702010
ProteinModelPortal:Q86XP3 SMR:Q86XP3 IntAct:Q86XP3
MINT:MINT-1427725 STRING:Q86XP3 PhosphoSite:Q86XP3 DMDM:74750541
PaxDb:Q86XP3 PRIDE:Q86XP3 Ensembl:ENST00000359353
Ensembl:ENST00000389924 Ensembl:ENST00000457800
Ensembl:ENST00000578681 Ensembl:ENST00000583590 GeneID:11325
KEGG:hsa:11325 UCSC:uc002jbu.3 GeneCards:GC17P061851
HGNC:HGNC:18676 HPA:HPA023447 HPA:HPA023571 HPA:HPA025941
MIM:613369 neXtProt:NX_Q86XP3 PharmGKB:PA134875761
InParanoid:Q86XP3 OMA:QGVNNTA ChiTaRS:DDX42 GenomeRNAi:11325
NextBio:43019 ArrayExpress:Q86XP3 Bgee:Q86XP3 CleanEx:HS_DDX42
Genevestigator:Q86XP3 Uniprot:Q86XP3
Length = 938
Score = 295 (108.9 bits), Expect = 9.8e-31, Sum P(3) = 9.8e-31
Identities = 88/313 (28%), Positives = 150/313 (47%)
Query: 32 GLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNE 91
G D +L+H + K +PT IQ +P+ L G+D++ AKTGSGKT A++ P+L + ++
Sbjct: 259 GFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLIHIMDQ 318
Query: 92 SSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCK--GQV-QLKVVQLTSSMPASDLRA 148
+ P A+++ PTRELCQQ+++E CK G+ L+ V + +
Sbjct: 319 KELEPGDGPIAVIVCPTRELCQQIHAE-------CKRFGKAYNLRSVAVYGGGSMWEQAK 371
Query: 149 ALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAV 208
AL +IV+ TPG L V + + + LV DEAD + G+E ++++++
Sbjct: 372 ALQEGAEIVVCTPGR----LIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQVRSIASH 427
Query: 209 IPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERD 268
+ Q LL SAT ++KL + IL +P + ++G+ ++V Q I S
Sbjct: 428 VRPDRQTLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDV----TQIVEILHSGPS 483
Query: 269 KXXXXXXXXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEE 328
K L+F A L L++ G +L+ ++ Q+ R ++ +
Sbjct: 484 KWNWLTRRLVEFTSSGSVLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVISD 543
Query: 329 FNAGLFDYLIATD 341
F L+ATD
Sbjct: 544 FKKKDIPVLVATD 556
Score = 122 (48.0 bits), Expect = 9.8e-31, Sum P(3) = 9.8e-31
Identities = 31/111 (27%), Positives = 58/111 (52%)
Query: 347 EKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGR 406
+ DQS+ + K K P L + RG+D ++ TVIN+++ ++ + HRIGR
Sbjct: 531 DMDQSERNKVISDFKKKDIPV--LVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGR 588
Query: 407 TGRAYNTGASVSLVSPDEMKIFEE-IKSFVGDDENEDSNIIAPFPLLAQNA 456
TGRA G + +L++P + + +++ G +++ ++ L QNA
Sbjct: 589 TGRAGEKGVAYTLLTPKDSNFAGDLVRNLEGANQHVSKELL---DLAMQNA 636
Score = 43 (20.2 bits), Expect = 9.8e-31, Sum P(3) = 9.8e-31
Identities = 16/55 (29%), Positives = 24/55 (43%)
Query: 550 GNKNS-SRRQGPRRKFRKSDPLKSFSAEPTKRAGKGRMKREGRNGDDTGKHKKKK 603
GN++S S R G R D + E + R G E R+G G+H + +
Sbjct: 825 GNRHSDSPRHGDGG--RHGDGYRH--PESSSRHTDGHRHGENRHGGSAGRHGENR 875
Score = 41 (19.5 bits), Expect = 3.9e-22, Sum P(2) = 3.9e-22
Identities = 10/37 (27%), Positives = 18/37 (48%)
Query: 359 SRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQ 395
+R+SK PK + + + +D K T F +P+
Sbjct: 891 NRESKMEPKMEPKVDSSKMDKVDSKTDKTADGFAVPE 927
Score = 38 (18.4 bits), Expect = 3.2e-30, Sum P(3) = 3.2e-30
Identities = 7/15 (46%), Positives = 10/15 (66%)
Query: 580 RAGKGRMKREGRNGD 594
R G+ R +GRNG+
Sbjct: 870 RHGENRGANDGRNGE 884
>FB|FBgn0029979 [details] [associations]
symbol:CG10777 species:7227 "Drosophila melanogaster"
[GO:0003724 "RNA helicase activity" evidence=ISS] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:AE014298
GO:GO:0006200 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 GO:GO:0003724
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0016779
GeneTree:ENSGT00660000095174 HSSP:P10081 EMBL:AY060404
RefSeq:NP_572424.1 UniGene:Dm.101 SMR:Q9W3M7 DIP:DIP-18838N
MINT:MINT-850836 EnsemblMetazoa:FBtr0071132 GeneID:31707
KEGG:dme:Dmel_CG10777 UCSC:CG10777-RB FlyBase:FBgn0029979
InParanoid:Q9W3M7 OMA:FLENRNT OrthoDB:EOG4B8GV9 GenomeRNAi:31707
NextBio:774939 Uniprot:Q9W3M7
Length = 945
Score = 292 (107.8 bits), Expect = 1.1e-30, Sum P(2) = 1.1e-30
Identities = 96/319 (30%), Positives = 151/319 (47%)
Query: 33 LDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNES 92
L ++ + ++G KPT IQ P+ L G+D+V A+TGSGKT AY+LP + + N+
Sbjct: 244 LPAHVIEEMKRQGFTKPTAIQSQGWPIALSGRDLVGIAQTGSGKTLAYMLPAIVHIGNQP 303
Query: 93 SPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSS-MP-ASDLRAAL 150
P ALVL PTREL QQ+ S V LCK +++ + SS +P A DL +
Sbjct: 304 PIIRGEGPIALVLAPTRELAQQIQSVVRDYGHLCKPEIRHTCIFGGSSKVPQARDLDRGV 363
Query: 151 AGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLKALSAVI 209
+++IATPG + L++++ + LVLDEAD +L G+E ++ + I
Sbjct: 364 ----EVIIATPGRL-----IDFLENRNTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQI 414
Query: 210 PRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDK 269
Q ++ SAT +V L L N YI +G + N++Q C+E +K
Sbjct: 415 RPDRQVVMWSATWPKEVQALAGDFL-NDYIQI--NIGSMNLSA-NHNIRQIVEICTEIEK 470
Query: 270 XXXXXXXXXXXXVQK-------KALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSR 322
K K ++F T + + G + ++ + QN R
Sbjct: 471 PQRLVCLLNEISPIKNSGNNGNKIIVFVETKIKVEDILQIIRAEGYNATSIHGDKTQNER 530
Query: 323 LHILEEFNAGLFDYLIATD 341
+L++F G + LIATD
Sbjct: 531 DSVLKDFRNGKSNILIATD 549
Score = 126 (49.4 bits), Expect = 1.1e-30, Sum P(2) = 1.1e-30
Identities = 29/86 (33%), Positives = 46/86 (53%)
Query: 378 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGD 437
RG+D +++ VIN++ P ++ YVHRIGRTGR G + + +PD K E+ S + +
Sbjct: 553 RGLDVEDLQYVINYDYPNSSENYVHRIGRTGRCQQLGTAYTFFTPDNAKQARELISVLEE 612
Query: 438 DENEDSNIIAPFPLLAQNAVESLRYR 463
S + LA++ S YR
Sbjct: 613 AGQTPSQALLD---LARSMPSSGGYR 635
>SGD|S000005730 [details] [associations]
symbol:DED1 "ATP-dependent DEAD (Asp-Glu-Ala-Asp)-box RNA
helicase" species:4932 "Saccharomyces cerevisiae" [GO:0006413
"translational initiation" evidence=IEA;IMP] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA;IC]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=IMP;IDA]
[GO:0033592 "RNA strand annealing activity" evidence=IDA]
[GO:0003743 "translation initiation factor activity" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0006412 "translation" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 SGD:S000005730 GO:GO:0005524 GO:GO:0005737
EMBL:BK006948 GO:GO:0006413 GO:GO:0003743 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00620000087942
HOGENOM:HOG000268804 KO:K11594 OrthoDB:EOG4XPTQ4 OMA:GNWANAN
EMBL:X57278 EMBL:Z75110 EMBL:X03245 PIR:S13653 RefSeq:NP_014847.3
RefSeq:NP_014849.3 ProteinModelPortal:P06634 SMR:P06634
DIP:DIP-5820N IntAct:P06634 MINT:MINT-697363 STRING:P06634
PaxDb:P06634 PeptideAtlas:P06634 EnsemblFungi:YOR204W GeneID:854379
GeneID:854381 KEGG:sce:YOR204W KEGG:sce:YOR206W CYGD:YOR204w
KO:K14833 SABIO-RK:P06634 NextBio:976514 Genevestigator:P06634
GermOnline:YOR204W GO:GO:0033592 Uniprot:P06634
Length = 604
Score = 280 (103.6 bits), Expect = 1.3e-30, Sum P(2) = 1.3e-30
Identities = 95/322 (29%), Positives = 152/322 (47%)
Query: 33 LDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNES 92
LD L+ + KPT +Q+ S+P++ G+D++A A+TGSGKT +L P+L F
Sbjct: 149 LDGLLLENIKLARFTKPTPVQKYSVPIVANGRDLMACAQTGSGKTGGFLFPVLSESFKTG 208
Query: 93 ---SPKS-------KLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMP 142
P+S K P A+++ PTREL Q++ E + V+ VV S +
Sbjct: 209 PSPQPESQGSFYQRKAYPTAVIMAPTRELATQIFDEAKKFTY--RSWVKACVVYGGSPI- 265
Query: 143 ASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDL 202
+ LR G D+++ATPG + L G + S ++ +K LVLDEAD +L G+E +
Sbjct: 266 GNQLREIERGC-DLLVATPGRLNDLLERGKI---SLAN-VKYLVLDEADRMLDMGFEPQI 320
Query: 203 KALSA---VIPRG-CQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQ 258
+ + + P G Q L+ SAT +D+ L + L + L++ VG + N+
Sbjct: 321 RHIVEDCDMTPVGERQTLMFSATFPADIQHLARDFLSDYIFLSVGRVGSTSE-----NIT 375
Query: 259 QFWISCSERDKXXXXXXXXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELP 318
Q + +DK LIF T MA +L FL ++ ++ +
Sbjct: 376 QKVLYVENQDKKSALLDLLSAST-DGLTLIFVETKRMADQLTDFLIMQNFRATAIHGDRT 434
Query: 319 QNSRLHILEEFNAGLFDYLIAT 340
Q+ R L F +G L+AT
Sbjct: 435 QSERERALAAFRSGAATLLVAT 456
Score = 131 (51.2 bits), Expect = 1.3e-30, Sum P(2) = 1.3e-30
Identities = 25/64 (39%), Positives = 38/64 (59%)
Query: 378 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGD 437
RG+D NV VIN+++P + YVHRIGRTGRA NTG + + + + I + + + +
Sbjct: 461 RGLDIPNVTHVINYDLPSDVDDYVHRIGRTGRAGNTGLATAFFNSENSNIVKGLHEILTE 520
Query: 438 DENE 441
E
Sbjct: 521 ANQE 524
>UNIPROTKB|E2RFF1 [details] [associations]
symbol:DDX42 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008104 "protein localization" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0008104 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 OMA:QGVNNTA
GeneTree:ENSGT00610000086076 EMBL:AAEX03006359
Ensembl:ENSCAFT00000020366 Uniprot:E2RFF1
Length = 933
Score = 295 (108.9 bits), Expect = 1.3e-30, Sum P(2) = 1.3e-30
Identities = 88/313 (28%), Positives = 150/313 (47%)
Query: 32 GLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNE 91
G D +L+H + K +PT IQ +P+ L G+D++ AKTGSGKT A++ P+L + ++
Sbjct: 259 GFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLIHIMDQ 318
Query: 92 SSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCK--GQV-QLKVVQLTSSMPASDLRA 148
+ P A+++ PTRELCQQ+++E CK G+ L+ V + +
Sbjct: 319 KELEPGDGPIAVIVCPTRELCQQIHAE-------CKRFGKAYNLRSVAVYGGGSMWEQAK 371
Query: 149 ALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAV 208
AL +IV+ TPG L V + + + LV DEAD + G+E ++++++
Sbjct: 372 ALQEGAEIVVCTPGR----LIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQVRSIASH 427
Query: 209 IPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERD 268
+ Q LL SAT ++KL + IL +P + ++G+ ++V Q I S
Sbjct: 428 VRPDRQTLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDV----TQIVEILHSGPS 483
Query: 269 KXXXXXXXXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEE 328
K L+F A L L++ G +L+ ++ Q+ R ++ +
Sbjct: 484 KWNWLTRRLVEFTSSGSVLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVISD 543
Query: 329 FNAGLFDYLIATD 341
F L+ATD
Sbjct: 544 FKKKDIPVLVATD 556
Score = 122 (48.0 bits), Expect = 1.3e-30, Sum P(2) = 1.3e-30
Identities = 31/111 (27%), Positives = 58/111 (52%)
Query: 347 EKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGR 406
+ DQS+ + K K P L + RG+D ++ TVIN+++ ++ + HRIGR
Sbjct: 531 DMDQSERNKVISDFKKKDIPV--LVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGR 588
Query: 407 TGRAYNTGASVSLVSPDEMKIFEE-IKSFVGDDENEDSNIIAPFPLLAQNA 456
TGRA G + +L++P + + +++ G +++ ++ L QNA
Sbjct: 589 TGRAGEKGVAYTLLTPKDSNFAGDLVRNLEGANQHVSKELL---DLAMQNA 636
>MGI|MGI:104976 [details] [associations]
symbol:Ddx6 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 6"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000932 "cytoplasmic mRNA processing body"
evidence=ISO] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=ISO] [GO:0016442 "RNA-induced silencing complex"
evidence=ISO] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0033962 "cytoplasmic mRNA processing body assembly"
evidence=ISO] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 MGI:MGI:104976 GO:GO:0005524
GO:GO:0003723 GO:GO:0000932 GO:GO:0016442 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0010494 GO:GO:0033962
GO:GO:0008026 eggNOG:COG0513 GeneTree:ENSGT00530000063986
HOGENOM:HOG000268797 KO:K12614 OMA:YSHARMK InterPro:IPR014014
PROSITE:PS51195 HOVERGEN:HBG106685 OrthoDB:EOG4J1182 CTD:1656
EMBL:D50494 EMBL:AK054144 EMBL:AK148483 EMBL:BC021452 EMBL:AF038995
IPI:IPI00109932 RefSeq:NP_001104296.1 RefSeq:NP_031867.1
RefSeq:NP_851841.2 UniGene:Mm.267061 ProteinModelPortal:P54823
SMR:P54823 IntAct:P54823 STRING:P54823 PhosphoSite:P54823
PaxDb:P54823 PRIDE:P54823 Ensembl:ENSMUST00000170489 GeneID:13209
KEGG:mmu:13209 UCSC:uc009pdy.2 InParanoid:P54823 NextBio:283376
Bgee:P54823 CleanEx:MM_DDX6 Genevestigator:P54823
GermOnline:ENSMUSG00000032097 Uniprot:P54823
Length = 483
Score = 281 (104.0 bits), Expect = 1.4e-30, Sum P(2) = 1.4e-30
Identities = 79/212 (37%), Positives = 115/212 (54%)
Query: 33 LDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNES 92
L L+ + + G +KP+ IQ+ SIP+ L G+D++ARAK G+GK+ AYL+PLL RL
Sbjct: 103 LKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERL---D 159
Query: 93 SPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAALAG 152
K + A+V+VPTREL QV S++ I++ K KV+ T D L
Sbjct: 160 LKKDNIQ--AMVIVPTRELALQV-SQIC--IQVSKHMGGAKVMATTGGTNLRDDIMRLDD 214
Query: 153 PPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRG 212
+VIATPG + + GV + D ++++VLDEAD LLS + ++ + +P+
Sbjct: 215 TVHVVIATPGRILDLIKKGVAKV----DHVQMIVLDEADKLLSQDFVQIMEDIILTLPKN 270
Query: 213 CQCLLMSATSSSDVDKLKKLILHNPYILTLPE 244
Q LL SAT V K L PY + L E
Sbjct: 271 RQILLYSATFPLSVQKFMNSHLQKPYEINLME 302
Score = 216 (81.1 bits), Expect = 6.9e-23, Sum P(2) = 6.9e-23
Identities = 71/240 (29%), Positives = 111/240 (46%)
Query: 102 ALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATP 161
A+V+VPTREL QV S++ I++ K KV+ T D L +VIATP
Sbjct: 167 AMVIVPTRELALQV-SQIC--IQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATP 223
Query: 162 GCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSAT 221
G + + GV + D ++++VLDEAD LLS + ++ + +P+ Q LL SAT
Sbjct: 224 GRILDLIKKGVAKV----DHVQMIVLDEADKLLSQDFVQIMEDIILTLPKNRQILLYSAT 279
Query: 222 SSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKXXXXXXXXXXXX 281
V K L PY + L E E+ K V Q++ +ER K
Sbjct: 280 FPLSVQKFMNSHLQKPYEINLME------ELTLKGVTQYYAYVTERQKVHCLNTLFSRLQ 333
Query: 282 VQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATD 341
+ + ++IF N+ L + + G ++A++ Q R + +F GL L+ TD
Sbjct: 334 INQ-SIIFCNSSQRVELLAKKISQLGYSCFYIHAKMRQEHRNRVFHDFRNGLCRNLVCTD 392
Score = 123 (48.4 bits), Expect = 1.4e-30, Sum P(2) = 1.4e-30
Identities = 24/61 (39%), Positives = 41/61 (67%)
Query: 378 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGD 437
RGID + V+ VINF+ P+ A Y+HRIGR+GR + G +++L++ D+ + I+ +G
Sbjct: 396 RGIDIQAVNVVINFDFPKLAETYLHRIGRSGRFGHLGLAINLITYDDRFNLKSIEEQLGT 455
Query: 438 D 438
+
Sbjct: 456 E 456
>RGD|1564560 [details] [associations]
symbol:Ddx6 "DEAD (Asp-Glu-Ala-Asp) box helicase 6"
species:10116 "Rattus norvegicus" [GO:0000932 "cytoplasmic mRNA
processing body" evidence=IEA;ISO] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IEA;ISO] [GO:0016442 "RNA-induced silencing
complex" evidence=IEA;ISO] [GO:0033962 "cytoplasmic mRNA processing
body assembly" evidence=IEA;ISO] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 RGD:1564560
GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 EMBL:CH473975 GO:GO:0008026
GeneTree:ENSGT00530000063986 KO:K12614 OMA:YSHARMK
InterPro:IPR014014 PROSITE:PS51195 OrthoDB:EOG4J1182 CTD:1656
IPI:IPI00558056 RefSeq:NP_001102762.1 UniGene:Rn.231713
Ensembl:ENSRNOT00000017391 GeneID:500988 KEGG:rno:500988
UCSC:RGD:1564560 NextBio:707903 Uniprot:D3ZD73
Length = 483
Score = 281 (104.0 bits), Expect = 1.4e-30, Sum P(2) = 1.4e-30
Identities = 79/212 (37%), Positives = 115/212 (54%)
Query: 33 LDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNES 92
L L+ + + G +KP+ IQ+ SIP+ L G+D++ARAK G+GK+ AYL+PLL RL
Sbjct: 103 LKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERL---D 159
Query: 93 SPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAALAG 152
K + A+V+VPTREL QV S++ I++ K KV+ T D L
Sbjct: 160 LKKDNIQ--AMVIVPTRELALQV-SQIC--IQVSKHMGGAKVMATTGGTNLRDDIMRLDD 214
Query: 153 PPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRG 212
+VIATPG + + GV + D ++++VLDEAD LLS + ++ + +P+
Sbjct: 215 TVHVVIATPGRILDLIKKGVAKV----DHVQMIVLDEADKLLSQDFVQIMEDIILTLPKN 270
Query: 213 CQCLLMSATSSSDVDKLKKLILHNPYILTLPE 244
Q LL SAT V K L PY + L E
Sbjct: 271 RQILLYSATFPLSVQKFMNSHLQKPYEINLME 302
Score = 216 (81.1 bits), Expect = 6.9e-23, Sum P(2) = 6.9e-23
Identities = 71/240 (29%), Positives = 111/240 (46%)
Query: 102 ALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATP 161
A+V+VPTREL QV S++ I++ K KV+ T D L +VIATP
Sbjct: 167 AMVIVPTRELALQV-SQIC--IQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATP 223
Query: 162 GCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSAT 221
G + + GV + D ++++VLDEAD LLS + ++ + +P+ Q LL SAT
Sbjct: 224 GRILDLIKKGVAKV----DHVQMIVLDEADKLLSQDFVQIMEDIILTLPKNRQILLYSAT 279
Query: 222 SSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKXXXXXXXXXXXX 281
V K L PY + L E E+ K V Q++ +ER K
Sbjct: 280 FPLSVQKFMNSHLQKPYEINLME------ELTLKGVTQYYAYVTERQKVHCLNTLFSRLQ 333
Query: 282 VQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATD 341
+ + ++IF N+ L + + G ++A++ Q R + +F GL L+ TD
Sbjct: 334 INQ-SIIFCNSSQRVELLAKKISQLGYSCFYIHAKMRQEHRNRVFHDFRNGLCRNLVCTD 392
Score = 123 (48.4 bits), Expect = 1.4e-30, Sum P(2) = 1.4e-30
Identities = 24/61 (39%), Positives = 41/61 (67%)
Query: 378 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGD 437
RGID + V+ VINF+ P+ A Y+HRIGR+GR + G +++L++ D+ + I+ +G
Sbjct: 396 RGIDIQAVNVVINFDFPKLAETYLHRIGRSGRFGHLGLAINLITYDDRFNLKSIEEQLGT 455
Query: 438 D 438
+
Sbjct: 456 E 456
>TAIR|locus:2159527 [details] [associations]
symbol:STRS2 "STRESS RESPONSE SUPPRESSOR 2" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA;ISS] [GO:0003723 "RNA binding" evidence=IDA]
[GO:0009409 "response to cold" evidence=IEP] [GO:0009414 "response
to water deprivation" evidence=IMP] [GO:0009651 "response to salt
stress" evidence=IMP] [GO:0042991 "transcription factor import into
nucleus" evidence=RCA] InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:CP002688 GenomeReviews:BA000015_GR
GO:GO:0009651 GO:GO:0009409 GO:GO:0009414 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268799 EMBL:AB006697 EMBL:AJ010473 EMBL:AY035114
EMBL:AY142638 IPI:IPI00534387 PIR:T51348 RefSeq:NP_196479.1
UniGene:At.47465 ProteinModelPortal:Q94C75 SMR:Q94C75 STRING:Q94C75
PRIDE:Q94C75 EnsemblPlants:AT5G08620.1 GeneID:830763
KEGG:ath:AT5G08620 GeneFarm:945 TAIR:At5g08620 InParanoid:Q94C75
OMA:RELACQA PhylomeDB:Q94C75 ProtClustDB:CLSN2687472
Genevestigator:Q94C75 GermOnline:AT5G08620 Uniprot:Q94C75
Length = 563
Score = 298 (110.0 bits), Expect = 1.6e-30, Sum P(2) = 1.6e-30
Identities = 94/316 (29%), Positives = 159/316 (50%)
Query: 45 GIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSK--LAPAA 102
G + T++Q+A++PLIL+GKD++A+AKTG+GKT A+LLP + + ++ P S+ P
Sbjct: 99 GFKTMTVVQEATLPLILQGKDILAKAKTGTGKTVAFLLPSIEAVI-KAPPASRDNRHPPI 157
Query: 103 LVLV--PTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIAT 160
+VLV PTREL Q +E L++ + ++VV + +P ++ R P I++AT
Sbjct: 158 IVLVVCPTRELACQAAAEANILLKY-HPSIGVQVVIGGTKLP-TEQRRLQKSPCQILVAT 215
Query: 161 PGCMPKCL-STGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMS 219
PG + + +T ++ +K+LVLDEAD LL G+ +++ + A +P+ Q L S
Sbjct: 216 PGRLKDHIDNTSGFATRLMG--VKVLVLDEADHLLDMGFRREIERIIAAVPKQRQTFLFS 273
Query: 220 ATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSER--DKXXXXXXXX 277
AT S +V ++ + L + + V + E K Q + I+ +R
Sbjct: 274 ATVSDEVRQICHVALKRDHEF-VNCVQEGAGETHQKVSQMYMIASLDRHFSLLYGLLKKH 332
Query: 278 XXXXVQKKALIFTNTIDMAFRLKL-FLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDY 336
V K +IF T M RL L K + +++ PQ+ R + +EF
Sbjct: 333 ITDNVGYKVIIFCTTA-MVTRLVADLLGKLSLNVREIHSRKPQSYRTRVSDEFRKSK-SI 390
Query: 337 LIATDDTQTKEKDQSD 352
++ T D + D D
Sbjct: 391 ILVTSDVSARGVDYPD 406
Score = 108 (43.1 bits), Expect = 1.6e-30, Sum P(2) = 1.6e-30
Identities = 20/55 (36%), Positives = 31/55 (56%)
Query: 378 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIK 432
RG+D+ +V V+ +P + Y+HR+GRTGR G V L++P E +K
Sbjct: 400 RGVDYPDVSLVVQMGLPSDREQYIHRLGRTGRKGKEGEGVLLLAPWEEYFLSSVK 454
>SGD|S000002602 [details] [associations]
symbol:MSS116 "DEAD-box protein involved splicing of
mitochondrial introns" species:4932 "Saccharomyces cerevisiae"
[GO:0000373 "Group II intron splicing" evidence=IMP;IDA]
[GO:0003723 "RNA binding" evidence=IEA;IDA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0006417 "regulation of translation" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IEA;IDA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005759
"mitochondrial matrix" evidence=IEA;IMP] [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=IDA] [GO:0000372 "Group I intron
splicing" evidence=IMP] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0034337 "RNA folding" evidence=IMP] [GO:0033592
"RNA strand annealing activity" evidence=IDA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 SGD:S000002602
GO:GO:0005524 GO:GO:0006417 GO:GO:0005759 GO:GO:0006397
EMBL:BK006938 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 EMBL:Z48784 GO:GO:0000373 GO:GO:0000372
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00700000105515 GO:GO:0033592 OrthoDB:EOG437VPN
PIR:S02116 RefSeq:NP_010480.1 PDB:3I5X PDB:3I5Y PDB:3I61 PDB:3I62
PDB:3SQW PDB:3SQX PDB:4DB2 PDB:4DB4 PDBsum:3I5X PDBsum:3I5Y
PDBsum:3I61 PDBsum:3I62 PDBsum:3SQW PDBsum:3SQX PDBsum:4DB2
PDBsum:4DB4 ProteinModelPortal:P15424 SMR:P15424 DIP:DIP-5368N
IntAct:P15424 MINT:MINT-525340 STRING:P15424 PaxDb:P15424
PeptideAtlas:P15424 EnsemblFungi:YDR194C GeneID:851775
KEGG:sce:YDR194C CYGD:YDR194c HOGENOM:HOG000113654 OMA:PEAHENI
EvolutionaryTrace:P15424 NextBio:969573 Genevestigator:P15424
GermOnline:YDR194C GO:GO:0034337 Uniprot:P15424
Length = 664
Score = 279 (103.3 bits), Expect = 1.6e-30, Sum P(2) = 1.6e-30
Identities = 100/329 (30%), Positives = 149/329 (45%)
Query: 33 LDLRLVHALNKKGIQKPTLIQQASIPLIL--EGKDVVARAKTGSGKTFAYLLPLLHRLFN 90
LD + A+ + T +QQ +I IL E DV+ARAKTG+GKTFA+L+P+ L N
Sbjct: 113 LDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLIN 172
Query: 91 ESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAAL 150
+ A +V PTR+L Q+ +EV + ++ G LK S + +D RAA+
Sbjct: 173 TKFDSQYMVKAVIV-APTRDLALQIEAEVKKIHDMNYG---LKKYACVSLVGGTDFRAAM 228
Query: 151 AGP----PDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALS 206
P+IVIATPG + L S F + VLDEAD LL G+ DDL+ +S
Sbjct: 229 NKMNKLRPNIVIATPGRLIDVLEK---YSNKFFRFVDYKVLDEADRLLEIGFRDDLETIS 285
Query: 207 AVIPR-------GCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQ 259
++ + LL SAT V KL I++ L L V + E + Q
Sbjct: 286 GILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQS 345
Query: 260 FWISCSERDKXXXXXXXXXXXXVQK----KALIFTNTIDM-AFRLKLFLEKFGIKSAIL- 313
IS + ++ KA+IF T+ +F + +F IL
Sbjct: 346 VVISEKFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILE 405
Query: 314 -NAELPQNSRLHILEEFNAGLFDYLIATD 341
+ ++ QN R +++ F L+ TD
Sbjct: 406 FHGKITQNKRTSLVKRFKKDESGILVCTD 434
Score = 133 (51.9 bits), Expect = 1.6e-30, Sum P(2) = 1.6e-30
Identities = 24/55 (43%), Positives = 34/55 (61%)
Query: 378 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIK 432
RG+DF NVH V+ +P A Y+HRIGRT R+ G+SV + DE+ E++
Sbjct: 438 RGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDELPFVRELE 492
>UNIPROTKB|Q8TDD1 [details] [associations]
symbol:DDX54 "ATP-dependent RNA helicase DDX54"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=IDA] [GO:0003714
"transcription corepressor activity" evidence=IDA] [GO:0005102
"receptor binding" evidence=IDA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0006396
"RNA processing" evidence=IDA] [GO:0016070 "RNA metabolic process"
evidence=IDA] [GO:0030331 "estrogen receptor binding" evidence=IDA]
[GO:0030520 "intracellular estrogen receptor signaling pathway"
evidence=TAS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012541 Pfam:PF00270 Pfam:PF00271
Pfam:PF08147 ProDom:PD024971 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003714 GO:GO:0005730
GO:GO:0006355 GO:GO:0006351 GO:GO:0003723 GO:GO:0006396
GO:GO:0030331 GO:GO:0030520 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K14808 HOGENOM:HOG000246455 OMA:FYIPYRP
EMBL:AF478457 EMBL:AC089999 EMBL:AY148094 EMBL:BC005848
IPI:IPI00152510 IPI:IPI00879999 RefSeq:NP_001104792.1
RefSeq:NP_076977.3 UniGene:Hs.506861 ProteinModelPortal:Q8TDD1
SMR:Q8TDD1 IntAct:Q8TDD1 STRING:Q8TDD1 PhosphoSite:Q8TDD1
DMDM:46576615 SWISS-2DPAGE:Q8TDD1 PaxDb:Q8TDD1 PRIDE:Q8TDD1
DNASU:79039 Ensembl:ENST00000306014 Ensembl:ENST00000314045
GeneID:79039 KEGG:hsa:79039 UCSC:uc001tup.3 UCSC:uc001tuq.4
CTD:79039 GeneCards:GC12M113595 HGNC:HGNC:20084 HPA:HPA028244
MIM:611665 neXtProt:NX_Q8TDD1 PharmGKB:PA134992026
HOVERGEN:HBG051333 InParanoid:Q8TDD1 ChiTaRS:DDX54 GenomeRNAi:79039
NextBio:67773 ArrayExpress:Q8TDD1 Bgee:Q8TDD1 CleanEx:HS_DDX54
Genevestigator:Q8TDD1 GermOnline:ENSG00000123064 Uniprot:Q8TDD1
Length = 881
Score = 297 (109.6 bits), Expect = 1.7e-30, Sum P(3) = 1.7e-30
Identities = 99/311 (31%), Positives = 145/311 (46%)
Query: 31 LGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFN 90
+GL + + KKG + PT IQ+ +IP+IL+GKDVVA A+TGSGKT +LLP+ RL
Sbjct: 101 MGLSYPVFKGIMKKGYKVPTPIQRKTIPVILDGKDVVAMARTGSGKTACFLLPMFERLKT 160
Query: 91 ESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAAL 150
S+ + AL+L PTREL Q EL K LK + D AAL
Sbjct: 161 HSA---QTGARALILSPTRELALQTLKFTK---ELGKF-TGLKTALILGGDRMEDQFAAL 213
Query: 151 AGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIP 210
PDI+IATPG + + V S S++ +V DEAD L G+ + L+ + A +P
Sbjct: 214 HENPDIIIATPG---RLVHVAVEMSLKLQ-SVEYVVFDEADRLFEMGFAEQLQEIIARLP 269
Query: 211 RGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKX 270
G Q +L SAT + + + L P ++ L DV ++ + F++ +
Sbjct: 270 GGHQTVLFSATLPKLLVEFARAGLTEPVLIRL----DVDTKLNEQLKTSFFLVREDTKAA 325
Query: 271 XXXXXXXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFN 330
Q + ++F T A L L + A + + L +R L +F
Sbjct: 326 VLLHLLHNVVRPQDQTVVFVATKHHAEYLTELLTTQRVSCAHIYSALDPTARKINLAKFT 385
Query: 331 AGLFDYLIATD 341
G LI TD
Sbjct: 386 LGKCSTLIVTD 396
Score = 118 (46.6 bits), Expect = 1.7e-30, Sum P(3) = 1.7e-30
Identities = 22/59 (37%), Positives = 35/59 (59%)
Query: 378 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVG 436
RG+D + VIN+ P ++HR+GR RA +G + SLV+PDE+ ++ F+G
Sbjct: 400 RGLDIPLLDNVINYSFPAKGKLFLHRVGRVARAGRSGTAYSLVAPDEIPYLLDLHLFLG 458
Score = 41 (19.5 bits), Expect = 1.7e-30, Sum P(3) = 1.7e-30
Identities = 12/51 (23%), Positives = 23/51 (45%)
Query: 552 KNSSRRQGPRRKFRKSDPLKSFSAEPTKRAGKGRMKREGRNGDDTGKHKKK 602
+ +S R+GP R+ K D + S GR++ E + K +++
Sbjct: 785 EGASDRRGPERRGGKRDRGQGASRPHAPGTPAGRVRPELKTKQQILKQRRR 835
>CGD|CAL0000056 [details] [associations]
symbol:orf19.7546 species:5476 "Candida albicans" [GO:0005634
"nucleus" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0000462 "maturation of SSU-rRNA from tricistronic rRNA
transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA]
[GO:0008186 "RNA-dependent ATPase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0003723
EMBL:AACQ01000032 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K14777 EMBL:AR550432 RefSeq:XP_719308.1
ProteinModelPortal:Q5ACU6 SMR:Q5ACU6 STRING:Q5ACU6 GeneID:3639008
KEGG:cal:CaO19.7546 Uniprot:Q5ACU6
Length = 539
Score = 269 (99.8 bits), Expect = 1.9e-30, Sum P(2) = 1.9e-30
Identities = 75/218 (34%), Positives = 110/218 (50%)
Query: 37 LVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKS 96
L+ ++ KPT IQ +IP LEGKD++ A+TGSGKT A+ +P+L L++ P
Sbjct: 134 LLESIESMKFTKPTPIQSEAIPHALEGKDIIGLAQTGSGKTAAFAIPILQSLWHAQQPYF 193
Query: 97 KLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDI 156
ALVL PTREL Q+ AL + L+ + M D L P +
Sbjct: 194 -----ALVLAPTRELTFQIKDTFDAL----GSSMGLRSSCIVGGMDMMDQARDLMRKPHV 244
Query: 157 VIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQC 215
++ATPG + L +K FS +LK LV+DEAD LL + L + VIP
Sbjct: 245 IVATPGRIMDHLE----HTKGFSLKNLKYLVMDEADRLLDMDFGPALDKILKVIPIKRTT 300
Query: 216 LLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVI 253
L SAT ++ ++KL++ LHNP + + D ++
Sbjct: 301 YLFSATMTNKIEKLQRASLHNPVRVAVSSKYQTADNLV 338
Score = 210 (79.0 bits), Expect = 1.2e-23, Sum P(2) = 1.2e-23
Identities = 72/241 (29%), Positives = 109/241 (45%)
Query: 102 ALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATP 161
ALVL PTREL Q+ AL + L+ + M D L P +++ATP
Sbjct: 194 ALVLAPTRELTFQIKDTFDAL----GSSMGLRSSCIVGGMDMMDQARDLMRKPHVIVATP 249
Query: 162 GCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSA 220
G + L +K FS +LK LV+DEAD LL + L + VIP L SA
Sbjct: 250 GRIMDHLE----HTKGFSLKNLKYLVMDEADRLLDMDFGPALDKILKVIPIKRTTYLFSA 305
Query: 221 TSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKXXXXXXXXXXX 280
T ++ ++KL++ LHNP + + D N+ Q + ++ K
Sbjct: 306 TMTNKIEKLQRASLHNPVRVAVSSKYQTAD-----NLVQSMMLVNDGYKNTILIHLLNEF 360
Query: 281 XVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIAT 340
+ K ++FT T+ A R L G + L+ +L Q+ RL L +F + + L+AT
Sbjct: 361 -MGKSIIVFTRTVAHAQRTALLARILGFNAVPLHGQLSQSQRLGSLNKFKSNQANILVAT 419
Query: 341 D 341
D
Sbjct: 420 D 420
Score = 139 (54.0 bits), Expect = 1.9e-30, Sum P(2) = 1.9e-30
Identities = 23/59 (38%), Positives = 43/59 (72%)
Query: 378 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVG 436
RG+D +V VIN+++P ++ Y+HR+GRT RA +G S+SL++ +++++ I+S +G
Sbjct: 424 RGLDIPSVDVVINYDIPTDSKAYIHRVGRTARAGRSGKSISLITQYDLEMYLRIESVLG 482
>TAIR|locus:2064844 [details] [associations]
symbol:AT2G40700 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0006312
"mitotic recombination" evidence=RCA] [GO:0006406 "mRNA export from
nucleus" evidence=RCA] [GO:0006606 "protein import into nucleus"
evidence=RCA] [GO:0006626 "protein targeting to mitochondrion"
evidence=RCA] [GO:0009560 "embryo sac egg cell differentiation"
evidence=RCA] [GO:0009561 "megagametogenesis" evidence=RCA]
[GO:0009640 "photomorphogenesis" evidence=RCA] [GO:0010388 "cullin
deneddylation" evidence=RCA] [GO:0042991 "transcription factor
import into nucleus" evidence=RCA] [GO:0051604 "protein maturation"
evidence=RCA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
InterPro:IPR025313 Pfam:PF13959 KO:K14806 HOGENOM:HOG000268799
EMBL:AJ010468 IPI:IPI00518934 PIR:G84832 PIR:T51746
RefSeq:NP_181602.1 UniGene:At.47 ProteinModelPortal:Q7XJN0
SMR:Q7XJN0 STRING:Q7XJN0 PaxDb:Q7XJN0 PRIDE:Q7XJN0
EnsemblPlants:AT2G40700.1 GeneID:818665 KEGG:ath:AT2G40700
GeneFarm:934 TAIR:At2g40700 InParanoid:Q7XJN0 OMA:HRFHWIV
PhylomeDB:Q7XJN0 ProtClustDB:CLSN2683635 Genevestigator:Q7XJN0
GermOnline:AT2G40700 Uniprot:Q7XJN0
Length = 609
Score = 279 (103.3 bits), Expect = 2.0e-30, Sum P(4) = 2.0e-30
Identities = 88/232 (37%), Positives = 125/232 (53%)
Query: 31 LGLDLRLVHALNKK-GIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLF 89
LGLD +L L ++ G + PTL+Q +IP+IL G+DV+ A TG+GKT AYL PL+H L
Sbjct: 34 LGLDTKLSDQLKERMGFEAPTLVQAQAIPVILSGRDVLVNAPTGTGKTIAYLAPLIHHLQ 93
Query: 90 NESSPKSKLAPA--ALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLR 147
S PK + ALV+VPTRELC QVY + L+ V V + A + +
Sbjct: 94 GHS-PKVDRSHGTFALVIVPTRELCLQVYETLEKLLHRFHWIVPGYV--MGGEKKAKE-K 149
Query: 148 AALAGPPDIVIATPGCMPKCLSTGVLQSKSF-SDSLKILVLDEADLLLSYGY----EDDL 202
A L I+IATPG + L + SF +L+ ++ DEAD +L GY E +
Sbjct: 150 ARLRKGISILIATPGRLLDHLKN----TASFVHKNLRWVIFDEADSILELGYGKEIEQII 205
Query: 203 KALSA----------VIPRGCQC--LLMSATSSSDVDKLKKLILHNPYILTL 242
K L + ++P+G Q LL+SAT + V+ L KL L +P ++ L
Sbjct: 206 KLLGSGQNEQGEEDDIVPKGIQKQNLLLSATLNDKVNDLAKLSLDDPVMIGL 257
Score = 121 (47.7 bits), Expect = 2.0e-30, Sum P(4) = 2.0e-30
Identities = 28/84 (33%), Positives = 44/84 (52%)
Query: 349 DQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTG 408
+Q D + K++K +A L S RG+DF V +I ++ P A YVHR+GRT
Sbjct: 384 EQEDRRSAFGTFKTEK--QAVLLSTDVAARGLDFPKVRCIIQYDCPGEATEYVHRVGRTA 441
Query: 409 RAYNTGASVSLVSPDEMKIFEEIK 432
R G ++ + P E+ +E+K
Sbjct: 442 RIGEKGEALLFLQPIEIDYLKELK 465
Score = 46 (21.3 bits), Expect = 2.0e-30, Sum P(4) = 2.0e-30
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 448 PFPLLAQNAVESLRYRAEDVAKSVTKIA 475
P+ + Q A+ESL Y AE KS+ K A
Sbjct: 502 PWVISLQRALESLTY-AEPKMKSLAKNA 528
Score = 40 (19.1 bits), Expect = 0.00041, Sum P(4) = 0.00041
Identities = 9/28 (32%), Positives = 18/28 (64%)
Query: 244 EVGDVKDEVIPKNVQQ--FWISCSERDK 269
E G+ +D+++PK +Q+ +S + DK
Sbjct: 214 EQGE-EDDIVPKGIQKQNLLLSATLNDK 240
Score = 37 (18.1 bits), Expect = 2.0e-30, Sum P(4) = 2.0e-30
Identities = 8/20 (40%), Positives = 11/20 (55%)
Query: 585 RMKREGRNGDDTGKHKKKKS 604
+ KR+ R GK +KK S
Sbjct: 580 KRKRDERQKGQQGKKRKKMS 599
>UNIPROTKB|Q5ZKB9 [details] [associations]
symbol:DDX6 "Probable ATP-dependent RNA helicase DDX6"
species:9031 "Gallus gallus" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000932 "cytoplasmic
mRNA processing body" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IEA] [GO:0016442 "RNA-induced silencing complex"
evidence=IEA] [GO:0033962 "cytoplasmic mRNA processing body
assembly" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003723
GO:GO:0000932 GO:GO:0016442 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0010494 GO:GO:0033962 GO:GO:0008026
eggNOG:COG0513 GeneTree:ENSGT00530000063986 HOGENOM:HOG000268797
OMA:YSHARMK InterPro:IPR014014 PROSITE:PS51195 HSSP:P26196
EMBL:AJ720165 IPI:IPI00595692 UniGene:Gga.2331
ProteinModelPortal:Q5ZKB9 SMR:Q5ZKB9 Ensembl:ENSGALT00000012405
HOVERGEN:HBG106685 InParanoid:Q5ZKB9 OrthoDB:EOG4J1182
ArrayExpress:Q5ZKB9 Uniprot:Q5ZKB9
Length = 483
Score = 277 (102.6 bits), Expect = 2.1e-30, Sum P(2) = 2.1e-30
Identities = 78/212 (36%), Positives = 115/212 (54%)
Query: 33 LDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNES 92
L L+ + + G +KP+ IQ+ SIP+ L G+D++ARAK G+GK+ AYL+PLL RL
Sbjct: 103 LKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERL---D 159
Query: 93 SPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAALAG 152
K + A+V+VPTREL QV S++ I++ K KV+ T D L
Sbjct: 160 LKKDNIQ--AMVIVPTRELALQV-SQIC--IQVSKHMGGAKVMATTGGTNLRDDIMRLDD 214
Query: 153 PPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRG 212
+VIATPG + + GV + + ++++VLDEAD LLS + ++ + +P+
Sbjct: 215 TVHVVIATPGRILDLIKKGVAKV----EHVQMIVLDEADKLLSQDFVQIMEDIILTLPKN 270
Query: 213 CQCLLMSATSSSDVDKLKKLILHNPYILTLPE 244
Q LL SAT V K L PY + L E
Sbjct: 271 RQILLYSATFPLSVQKFMNSHLQKPYEINLME 302
Score = 212 (79.7 bits), Expect = 9.5e-23, Sum P(2) = 9.5e-23
Identities = 70/240 (29%), Positives = 111/240 (46%)
Query: 102 ALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATP 161
A+V+VPTREL QV S++ I++ K KV+ T D L +VIATP
Sbjct: 167 AMVIVPTRELALQV-SQIC--IQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATP 223
Query: 162 GCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSAT 221
G + + GV + + ++++VLDEAD LLS + ++ + +P+ Q LL SAT
Sbjct: 224 GRILDLIKKGVAKV----EHVQMIVLDEADKLLSQDFVQIMEDIILTLPKNRQILLYSAT 279
Query: 222 SSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKXXXXXXXXXXXX 281
V K L PY + L E E+ K V Q++ +ER K
Sbjct: 280 FPLSVQKFMNSHLQKPYEINLME------ELTLKGVTQYYAYVTERQKVHCLNTLFSRLQ 333
Query: 282 VQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATD 341
+ + ++IF N+ L + + G ++A++ Q R + +F GL L+ TD
Sbjct: 334 INQ-SIIFCNSSQRVELLAKKISQLGYSCFYIHAKMRQEHRNRVFHDFRNGLCRNLVCTD 392
Score = 126 (49.4 bits), Expect = 2.1e-30, Sum P(2) = 2.1e-30
Identities = 30/90 (33%), Positives = 50/90 (55%)
Query: 378 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGD 437
RGID + V+ VINF+ P+ A Y+HRIGR+GR + G +++L++ D+ + I+ +G
Sbjct: 396 RGIDIQAVNVVINFDFPKLAETYLHRIGRSGRFGHLGLAINLITYDDRFNLKSIEEQLGT 455
Query: 438 DENEDSNIIAPFPLLAQNAVESLRYRAEDV 467
+ I P P ++ Y +E V
Sbjct: 456 E-------IKPIPSNIDKSLYVAEYHSEPV 478
>ASPGD|ASPL0000013201 [details] [associations]
symbol:AN4233 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0003723 EMBL:BN001302
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0008026 EMBL:AACD01000068 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268802 KO:K14777 OMA:IFIPSKF
RefSeq:XP_661837.1 ProteinModelPortal:Q5B5E7 SMR:Q5B5E7
STRING:Q5B5E7 EnsemblFungi:CADANIAT00004427 GeneID:2873652
KEGG:ani:AN4233.2 OrthoDB:EOG4ZPJ3P Uniprot:Q5B5E7
Length = 465
Score = 279 (103.3 bits), Expect = 2.2e-30, Sum P(2) = 2.2e-30
Identities = 79/208 (37%), Positives = 112/208 (53%)
Query: 31 LGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFN 90
LG+ +L A G + PT IQ +IPL LEG+DV+ A+TGSGKT A+ LP+L L
Sbjct: 51 LGIIDQLCEACENMGYKAPTPIQSQAIPLALEGRDVIGLAETGSGKTAAFALPMLQALME 110
Query: 91 ESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAAL 150
+P++ LVL PTREL Q+ S+ + G V+ V+ M A + AL
Sbjct: 111 --APQTLFG---LVLAPTRELAYQI-SQAFETLGSTIG-VRCAVIVGGMDMVAQSI--AL 161
Query: 151 AGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLKALSAVI 209
P I++ATPG + L +K FS +LK L +DEAD LL + + L + ++
Sbjct: 162 GKKPHIIVATPGRLLDHLEN----TKGFSLRNLKYLAIDEADRLLDMDFGESLDKIIRIL 217
Query: 210 PRGCQCLLMSATSSSDVDKLKKLILHNP 237
PR L SAT S+ V+ L++ L NP
Sbjct: 218 PRTRHTYLFSATMSTKVESLQRASLSNP 245
Score = 220 (82.5 bits), Expect = 2.4e-23, Sum P(2) = 2.4e-23
Identities = 74/240 (30%), Positives = 114/240 (47%)
Query: 103 LVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPG 162
LVL PTREL Q+ S+ + G V+ V+ M A + AL P I++ATPG
Sbjct: 118 LVLAPTRELAYQI-SQAFETLGSTIG-VRCAVIVGGMDMVAQSI--ALGKKPHIIVATPG 173
Query: 163 CMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSAT 221
+ L +K FS +LK L +DEAD LL + + L + ++PR L SAT
Sbjct: 174 RLLDHLEN----TKGFSLRNLKYLAIDEADRLLDMDFGESLDKIIRILPRTRHTYLFSAT 229
Query: 222 SSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKXXXXXXXXXXXX 281
S+ V+ L++ L NP +++ K + + +Q +I + K
Sbjct: 230 MSTKVESLQRASLSNPVRVSVSS----KYQTV-STLQSSYICIPHKHKNLYLVYLLNEFA 284
Query: 282 VQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATD 341
Q A+IFT T+ R+ L G + L+ +L Q++RL L +F + D L+ATD
Sbjct: 285 GQS-AIIFTTTVHETQRVAFMLRALGFGAIPLHGQLSQSARLGALGKFRSRSRDILVATD 343
Score = 122 (48.0 bits), Expect = 2.2e-30, Sum P(2) = 2.2e-30
Identities = 20/55 (36%), Positives = 38/55 (69%)
Query: 378 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIK 432
RG+D +V V NF++P ++ Y+HR+GRT RA +G ++S V+ +++++ I+
Sbjct: 347 RGLDIPSVDVVFNFDLPMDSKTYIHRVGRTARAGKSGVAISFVTQYDVEVWLRIE 401
>TAIR|locus:2081061 [details] [associations]
symbol:AT3G06480 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0005773
"vacuole" evidence=IDA] [GO:0006635 "fatty acid beta-oxidation"
evidence=RCA] [GO:0016558 "protein import into peroxisome matrix"
evidence=RCA] InterPro:IPR000629 InterPro:IPR001202
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
Pfam:PF00397 PROSITE:PS00039 PROSITE:PS01159 PROSITE:PS50020
PROSITE:PS51194 SMART:SM00456 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0005773 EMBL:CP002686 GenomeReviews:BA000014_GR
GO:GO:0000184 GO:GO:0003723 EMBL:AC011623 Gene3D:2.20.70.10
SUPFAM:SSF51045 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K12823 IPI:IPI00528334 RefSeq:NP_187299.1
UniGene:At.27592 ProteinModelPortal:Q9SQV1 SMR:Q9SQV1 PaxDb:Q9SQV1
PRIDE:Q9SQV1 EnsemblPlants:AT3G06480.1 GeneID:819825
KEGG:ath:AT3G06480 GeneFarm:1016 TAIR:At3g06480
HOGENOM:HOG000154116 InParanoid:Q9SQV1 OMA:GMRENSF PhylomeDB:Q9SQV1
ProtClustDB:CLSN2915418 Genevestigator:Q9SQV1 GermOnline:AT3G06480
Uniprot:Q9SQV1
Length = 1088
Score = 294 (108.6 bits), Expect = 2.2e-30, Sum P(2) = 2.2e-30
Identities = 91/311 (29%), Positives = 141/311 (45%)
Query: 32 GLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNE 91
GL ++ L G PT IQ + P+ L+ +D+VA AKTGSGKT YL+P L
Sbjct: 441 GLPPEILRELLSAGFPSPTPIQAQTWPIALQSRDIVAIAKTGSGKTLGYLIPAFI-LLRH 499
Query: 92 SSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAALA 151
S+ P L+L PTREL Q+ E + + + L P L
Sbjct: 500 CRNDSRNGPTVLILAPTRELATQIQDEALRFGRSSR----ISCTCLYGGAPKGPQLKELE 555
Query: 152 GPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPR 211
DIV+ATPG + L ++ + S +LVLDEAD +L G+E ++ + IP
Sbjct: 556 RGADIVVATPGRLNDILEMKMIDFQQVS----LLVLDEADRMLDMGFEPQIRKIVNEIPP 611
Query: 212 GCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKXX 271
Q L+ +AT +V K+ +L NP + +G V + K + Q+ + +K
Sbjct: 612 RRQTLMYTATWPKEVRKIASDLLVNPVQVN---IGRVDELAANKAITQYVEVVPQMEKER 668
Query: 272 XXXXXXXXXXVQKKALIFTNTIDMAFRLKLFLEK-FGIKSAILNAELPQNSRLHILEEFN 330
K +IF +T + L + + FG + +++ + Q R +L +F
Sbjct: 669 RLEQILRSQERGSKVIIFCSTKRLCDHLARSVGRHFG--AVVIHGDKTQGERDWVLNQFR 726
Query: 331 AGLFDYLIATD 341
+G LIATD
Sbjct: 727 SGKSCVLIATD 737
Score = 123 (48.4 bits), Expect = 2.2e-30, Sum P(2) = 2.2e-30
Identities = 25/63 (39%), Positives = 37/63 (58%)
Query: 378 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEE-IKSFVG 436
RG+D K++ VIN++ P YVHRIGRTGRA TG + + + + K + IK G
Sbjct: 741 RGLDIKDIRVVINYDFPTGVEDYVHRIGRTGRAGATGVAFTFFTEQDWKYAPDLIKVLEG 800
Query: 437 DDE 439
++
Sbjct: 801 ANQ 803
Score = 62 (26.9 bits), Expect = 5.3e-24, Sum P(2) = 5.3e-24
Identities = 21/69 (30%), Positives = 29/69 (42%)
Query: 352 DEGGHVDSRKSKKHPKAKLDSEFGVVR--GIDFKN-VHTVINFEMPQNAAGYVHRIGRTG 408
D GGH SR + P + R G D K V +V+N +M NAA + + T
Sbjct: 1004 DRGGHNRSRSYSRSPSPVYERRDRAPRVSGFDIKPPVESVVNLDM--NAAAAIENVVPTS 1061
Query: 409 RAYNTGASV 417
+ G V
Sbjct: 1062 LSERQGNGV 1070
>UNIPROTKB|E1BII7 [details] [associations]
symbol:DDX43 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005622 "intracellular" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR011545 Pfam:PF00013 Pfam:PF00270
Pfam:PF00271 PROSITE:PS00039 PROSITE:PS50084 PROSITE:PS51194
SMART:SM00322 SMART:SM00490 GO:GO:0005524 GO:GO:0003723
GO:GO:0005622 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 EMBL:DAAA02025231 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00660000095174 EMBL:DAAA02025227 EMBL:DAAA02025228
EMBL:DAAA02025229 EMBL:DAAA02025230 IPI:IPI00712097
Ensembl:ENSBTAT00000029077 OMA:ANQNIPE Uniprot:E1BII7
Length = 647
Score = 271 (100.5 bits), Expect = 2.2e-30, Sum P(2) = 2.2e-30
Identities = 100/305 (32%), Positives = 143/305 (46%)
Query: 41 LNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLP-LLHRLFNESSPKSKLA 99
+ K G QKPT IQ + P+IL+G D++ A+TG+GKT +YL+P +H +++
Sbjct: 256 IEKAGFQKPTPIQSQAWPIILQGIDLIGVAQTGTGKTLSYLMPGFIHIDSQPVLQRARNG 315
Query: 100 PAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIA 159
P LVL PTREL QV +E +G LK V + L+ DI+IA
Sbjct: 316 PGMLVLTPTRELALQVDAECSEYSY--RG---LKSVCIYGGGDRDGQIKDLSKGADIIIA 370
Query: 160 TPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDL-KALSAVIPRGCQCLLM 218
TPG + + KS + LVLDEAD +L G+E + K L V P Q ++
Sbjct: 371 TPGRLHDLQMNNFVYLKSIT----YLVLDEADKMLDMGFEPQIMKILLDVRPDR-QTVMT 425
Query: 219 SATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKXXXXXXXXX 278
SAT V +L + L P I+ VG + D V V Q I +E +K
Sbjct: 426 SATWPYAVRRLAQSYLKEPMIVY---VGTL-DLVAVSTVTQNIIVTTEDEKRSHIQAFID 481
Query: 279 XXXVQKKALIFTNTIDMAFRLK--LFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDY 336
+ K +IF + +A L L + + ++S N E Q+ R L+ F G
Sbjct: 482 SMSPKDKVIIFVSRKAVADHLSSDLGIRRISVESLHGNRE--QSDRERALKSFKTGKVRI 539
Query: 337 LIATD 341
LIATD
Sbjct: 540 LIATD 544
Score = 140 (54.3 bits), Expect = 2.2e-30, Sum P(2) = 2.2e-30
Identities = 39/122 (31%), Positives = 68/122 (55%)
Query: 348 KDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRT 407
++QSD + S K+ K + + ++ RG+D +V V N++ P+N YVHR+GRT
Sbjct: 520 REQSDRERALKSFKTGK-VRILIATDLAS-RGLDVHDVTHVYNYDFPRNIEEYVHRVGRT 577
Query: 408 GRAYNTGASVSLVSPDEMKIFEEIKSFVGDDENEDSNIIAPFPLLAQNAVESLRYRAEDV 467
GRA TG S++L++ ++ KI E+ + + E +N P L++ + RY+A +
Sbjct: 578 GRAGRTGVSITLITRNDWKIAGELINIL-----ERANQSVPEDLVSM----AERYKANKL 628
Query: 468 AK 469
K
Sbjct: 629 KK 630
>MGI|MGI:1919297 [details] [associations]
symbol:Ddx42 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 42"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005737 "cytoplasm"
evidence=ISO] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008104 "protein localization" evidence=ISO]
[GO:0016787 "hydrolase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 MGI:MGI:1919297
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0008104
GO:GO:0016607 GO:GO:0003723 GO:GO:0015030 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 EMBL:AL604045 HSSP:P09052
CTD:11325 HOGENOM:HOG000268793 HOVERGEN:HBG081425 KO:K12835
OrthoDB:EOG47WNN9 OMA:QGVNNTA ChiTaRS:DDX42 EMBL:AK007805
EMBL:AK049311 EMBL:AK169816 EMBL:AK171730 EMBL:BC043036
IPI:IPI00329839 IPI:IPI00830514 RefSeq:NP_082350.3 UniGene:Mm.41367
ProteinModelPortal:Q810A7 SMR:Q810A7 IntAct:Q810A7 STRING:Q810A7
PhosphoSite:Q810A7 PaxDb:Q810A7 PRIDE:Q810A7
Ensembl:ENSMUST00000021046 GeneID:72047 KEGG:mmu:72047
UCSC:uc007lyk.2 UCSC:uc007lyl.2 GeneTree:ENSGT00610000086076
InParanoid:Q810A7 NextBio:335308 Bgee:Q810A7 CleanEx:MM_DDX42
Genevestigator:Q810A7 Uniprot:Q810A7
Length = 929
Score = 296 (109.3 bits), Expect = 2.3e-30, Sum P(3) = 2.3e-30
Identities = 88/313 (28%), Positives = 150/313 (47%)
Query: 32 GLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNE 91
G D +L+H + K +PT IQ +P+ L G+D++ AKTGSGKT A++ P+L + ++
Sbjct: 259 GFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLIHIMDQ 318
Query: 92 SSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCK--GQV-QLKVVQLTSSMPASDLRA 148
+ P A+++ PTRELCQQ+++E CK G+ L+ V + +
Sbjct: 319 KELEPGDGPIAVIVCPTRELCQQIHAE-------CKRFGKAYNLRSVAVYGGGSMWEQAK 371
Query: 149 ALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAV 208
AL +IV+ TPG L V + + + LV DEAD + G+E ++++++
Sbjct: 372 ALQEGAEIVVCTPGR----LIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQVRSIASH 427
Query: 209 IPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERD 268
+ Q LL SAT ++KL + IL +P + ++G+ ++V Q I S
Sbjct: 428 VRPDRQTLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDV----TQIVEILHSGPS 483
Query: 269 KXXXXXXXXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEE 328
K L+F A L L++ G +L+ ++ Q+ R ++ +
Sbjct: 484 KWNWLTRRLVEFTSSGSVLLFVTKKANAEELASNLKQEGHNLGLLHGDMDQSERNKVISD 543
Query: 329 FNAGLFDYLIATD 341
F L+ATD
Sbjct: 544 FKKKDIPVLVATD 556
Score = 122 (48.0 bits), Expect = 2.3e-30, Sum P(3) = 2.3e-30
Identities = 31/111 (27%), Positives = 58/111 (52%)
Query: 347 EKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGR 406
+ DQS+ + K K P L + RG+D ++ TVIN+++ ++ + HRIGR
Sbjct: 531 DMDQSERNKVISDFKKKDIPV--LVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGR 588
Query: 407 TGRAYNTGASVSLVSPDEMKIFEE-IKSFVGDDENEDSNIIAPFPLLAQNA 456
TGRA G + +L++P + + +++ G +++ ++ L QNA
Sbjct: 589 TGRAGEKGVAYTLLTPKDSNFAGDLVRNLEGANQHVSKELL---DLAMQNA 636
Score = 38 (18.4 bits), Expect = 2.3e-30, Sum P(3) = 2.3e-30
Identities = 7/15 (46%), Positives = 10/15 (66%)
Query: 580 RAGKGRMKREGRNGD 594
R G+ R +GRNG+
Sbjct: 865 RHGESRGANDGRNGE 879
>UNIPROTKB|Q8EGU0 [details] [associations]
symbol:SO_1501 "ATP-dependent RNA helicase DEAD box family"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 HOGENOM:HOG000268807
OMA:GGANMNP RefSeq:NP_717118.1 ProteinModelPortal:Q8EGU0
GeneID:1169311 KEGG:son:SO_1501 PATRIC:23522644
ProtClustDB:CLSK906294 Uniprot:Q8EGU0
Length = 456
Score = 261 (96.9 bits), Expect = 2.4e-30, Sum P(2) = 2.4e-30
Identities = 73/214 (34%), Positives = 114/214 (53%)
Query: 31 LGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFN 90
LGL L++A+ + G Q+ T +QQ IPL L GKD++A A+TG+GKT A+ LP+L +L
Sbjct: 6 LGLSSPLLNAITECGYQQLTQVQQQVIPLALVGKDIMACAQTGTGKTAAFALPVLEQL-- 63
Query: 91 ESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAAL 150
+ P K ALV+ PTREL QV + + + + LK + + + R +
Sbjct: 64 AAKPADKPLLRALVMTPTRELAIQVCANIQKYSQF----LPLKTLAVYGGANMNPQRKGV 119
Query: 151 AGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIP 210
DI++ATPG + + Q S+ LV+DEAD +L G+ D++ + +I
Sbjct: 120 EQGVDILVATPGRLFDIIG----QFNLDLSSVTTLVIDEADRMLDLGFVRDIEKVKRLIA 175
Query: 211 RGCQCLLMSATSSSDVDKLKKLILHNPYILTLPE 244
Q +L SAT S V +L +L+ P + + E
Sbjct: 176 PVHQTMLFSATYSDAVKQLSHKMLNQPQWVNVAE 209
Score = 192 (72.6 bits), Expect = 3.0e-22, Sum P(2) = 3.0e-22
Identities = 68/250 (27%), Positives = 113/250 (45%)
Query: 92 SSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAALA 151
+ P K ALV+ PTREL QV + + + + LK + + + R +
Sbjct: 65 AKPADKPLLRALVMTPTRELAIQVCANIQKYSQF----LPLKTLAVYGGANMNPQRKGVE 120
Query: 152 GPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPR 211
DI++ATPG + + Q S+ LV+DEAD +L G+ D++ + +I
Sbjct: 121 QGVDILVATPGRLFDIIG----QFNLDLSSVTTLVIDEADRMLDLGFVRDIEKVKRLIAP 176
Query: 212 GCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKXX 271
Q +L SAT S D +K+L H +L P+ +V + V+Q +R K
Sbjct: 177 VHQTMLFSATYS---DAVKQLS-HK--MLNQPQWVNVAENTTASTVEQLVYRVDKRRKAE 230
Query: 272 XXXXXXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNA 331
++ L+F +T + A L L GI + + + + Q +R +L++F A
Sbjct: 231 LLSELVGRNN-WRQVLVFASTKECAEHLLQELTLDGISAGVFHGDKTQGARNRVLDDFKA 289
Query: 332 GLFDYLIATD 341
G L+ATD
Sbjct: 290 GKLRVLVATD 299
Score = 142 (55.0 bits), Expect = 2.4e-30, Sum P(2) = 2.4e-30
Identities = 28/60 (46%), Positives = 42/60 (70%)
Query: 378 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGD 437
RG+D + + VIN E+P A YVHRIGRTGRA +G ++S VSP + ++ EI++ +G+
Sbjct: 303 RGLDIQALPLVINLELPFLAEDYVHRIGRTGRAGLSGRAISFVSPADDEMLAEIEALIGE 362
>TIGR_CMR|SO_1501 [details] [associations]
symbol:SO_1501 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 HOGENOM:HOG000268807
OMA:GGANMNP RefSeq:NP_717118.1 ProteinModelPortal:Q8EGU0
GeneID:1169311 KEGG:son:SO_1501 PATRIC:23522644
ProtClustDB:CLSK906294 Uniprot:Q8EGU0
Length = 456
Score = 261 (96.9 bits), Expect = 2.4e-30, Sum P(2) = 2.4e-30
Identities = 73/214 (34%), Positives = 114/214 (53%)
Query: 31 LGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFN 90
LGL L++A+ + G Q+ T +QQ IPL L GKD++A A+TG+GKT A+ LP+L +L
Sbjct: 6 LGLSSPLLNAITECGYQQLTQVQQQVIPLALVGKDIMACAQTGTGKTAAFALPVLEQL-- 63
Query: 91 ESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAAL 150
+ P K ALV+ PTREL QV + + + + LK + + + R +
Sbjct: 64 AAKPADKPLLRALVMTPTRELAIQVCANIQKYSQF----LPLKTLAVYGGANMNPQRKGV 119
Query: 151 AGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIP 210
DI++ATPG + + Q S+ LV+DEAD +L G+ D++ + +I
Sbjct: 120 EQGVDILVATPGRLFDIIG----QFNLDLSSVTTLVIDEADRMLDLGFVRDIEKVKRLIA 175
Query: 211 RGCQCLLMSATSSSDVDKLKKLILHNPYILTLPE 244
Q +L SAT S V +L +L+ P + + E
Sbjct: 176 PVHQTMLFSATYSDAVKQLSHKMLNQPQWVNVAE 209
Score = 192 (72.6 bits), Expect = 3.0e-22, Sum P(2) = 3.0e-22
Identities = 68/250 (27%), Positives = 113/250 (45%)
Query: 92 SSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAALA 151
+ P K ALV+ PTREL QV + + + + LK + + + R +
Sbjct: 65 AKPADKPLLRALVMTPTRELAIQVCANIQKYSQF----LPLKTLAVYGGANMNPQRKGVE 120
Query: 152 GPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPR 211
DI++ATPG + + Q S+ LV+DEAD +L G+ D++ + +I
Sbjct: 121 QGVDILVATPGRLFDIIG----QFNLDLSSVTTLVIDEADRMLDLGFVRDIEKVKRLIAP 176
Query: 212 GCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKXX 271
Q +L SAT S D +K+L H +L P+ +V + V+Q +R K
Sbjct: 177 VHQTMLFSATYS---DAVKQLS-HK--MLNQPQWVNVAENTTASTVEQLVYRVDKRRKAE 230
Query: 272 XXXXXXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNA 331
++ L+F +T + A L L GI + + + + Q +R +L++F A
Sbjct: 231 LLSELVGRNN-WRQVLVFASTKECAEHLLQELTLDGISAGVFHGDKTQGARNRVLDDFKA 289
Query: 332 GLFDYLIATD 341
G L+ATD
Sbjct: 290 GKLRVLVATD 299
Score = 142 (55.0 bits), Expect = 2.4e-30, Sum P(2) = 2.4e-30
Identities = 28/60 (46%), Positives = 42/60 (70%)
Query: 378 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGD 437
RG+D + + VIN E+P A YVHRIGRTGRA +G ++S VSP + ++ EI++ +G+
Sbjct: 303 RGLDIQALPLVINLELPFLAEDYVHRIGRTGRAGLSGRAISFVSPADDEMLAEIEALIGE 362
>UNIPROTKB|Q5F485 [details] [associations]
symbol:DDX42 "ATP-dependent RNA helicase DDX42"
species:9031 "Gallus gallus" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008104 "protein
localization" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0008104 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 HSSP:P09052
EMBL:AJ851415 IPI:IPI00576529 RefSeq:NP_001026097.1
UniGene:Gga.5156 ProteinModelPortal:Q5F485 STRING:Q5F485
GeneID:419959 KEGG:gga:419959 CTD:11325 HOGENOM:HOG000268793
HOVERGEN:HBG081425 InParanoid:Q5F485 KO:K12835 OrthoDB:EOG47WNN9
NextBio:20822943 Uniprot:Q5F485
Length = 944
Score = 297 (109.6 bits), Expect = 2.7e-30, Sum P(2) = 2.7e-30
Identities = 91/320 (28%), Positives = 155/320 (48%)
Query: 32 GLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNE 91
G D +L+H + K +PT IQ +P+ + G+D++ AKTGSGKT A++ P+L + ++
Sbjct: 259 GFDEQLMHQIRKSEYTQPTPIQCQGVPVAMSGRDMIGIAKTGSGKTAAFIWPMLIHIMDQ 318
Query: 92 SSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCK--GQV-QLKVVQLTSSMPASDLRA 148
+ P A+++ PTRELCQQ++SE CK G+ L+ V + +
Sbjct: 319 KELEPGDGPIAVIVCPTRELCQQIHSE-------CKRFGKAYNLRSVAVYGGGSMWEQAK 371
Query: 149 ALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAV 208
AL +IV+ TPG L V + + + LV DEAD + G+E ++++++
Sbjct: 372 ALQEGAEIVVCTPGR----LIDHVKKKATNLQRVTYLVFDEADRMFDMGFEYQVRSIASH 427
Query: 209 IPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKD------EVIPKNVQQF-W 261
+ Q LL SAT ++KL + IL +P + ++G+ + E+ P ++ W
Sbjct: 428 VRPDRQTLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEIFPSGPSKWNW 487
Query: 262 ISCSERDKXXXXXXXXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNS 321
++ R V KKA N ++A LK G+ L+ ++ Q+
Sbjct: 488 LT---RRLVEFTSSGSVLLFVTKKA----NAEELANNLKQEDHNLGL----LHGDMDQSE 536
Query: 322 RLHILEEFNAGLFDYLIATD 341
R ++ EF L+ATD
Sbjct: 537 RNKVISEFKKKGIPILVATD 556
Score = 117 (46.2 bits), Expect = 2.7e-30, Sum P(2) = 2.7e-30
Identities = 27/101 (26%), Positives = 54/101 (53%)
Query: 347 EKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGR 406
+ DQS+ + K K P L + RG+D ++ TVIN+++ ++ + HRIGR
Sbjct: 531 DMDQSERNKVISEFKKKGIPI--LVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGR 588
Query: 407 TGRAYNTGASVSLVSPDEMKIFEE-IKSFVGDDENEDSNII 446
TGRA G + +L++P + + +++ G +++ ++
Sbjct: 589 TGRAGEKGVAYTLLTPKDSNFAGDLVRNLEGANQHVSKELL 629
>UNIPROTKB|A4RGU2 [details] [associations]
symbol:DBP4 "ATP-dependent RNA helicase DBP4"
species:242507 "Magnaporthe oryzae 70-15" [GO:0043581 "mycelium
development" evidence=IEP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0003723 GO:GO:0043581 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 EMBL:CM001232 GO:GO:0006364 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 KO:K14776
InterPro:IPR025313 Pfam:PF13959 OrthoDB:EOG4R53B0
RefSeq:XP_003715000.1 ProteinModelPortal:A4RGU2 STRING:A4RGU2
EnsemblFungi:MGG_08049T0 GeneID:2678339 KEGG:mgr:MGG_08049
Uniprot:A4RGU2
Length = 798
Score = 291 (107.5 bits), Expect = 2.7e-30, Sum P(2) = 2.7e-30
Identities = 96/296 (32%), Positives = 147/296 (49%)
Query: 50 TLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNES-SPKSKLAPAALVLVPT 108
T IQ +IPL L+G+D++ AKTGSGKT A+L+PLL +L+ E + ++KL ALVL PT
Sbjct: 73 TDIQARAIPLALKGRDILGAAKTGSGKTLAFLVPLLEKLYREQWTQEAKLG--ALVLSPT 130
Query: 109 RELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCL 168
REL Q + +V+ I G+ L L + A +I+I TPG + + L
Sbjct: 131 RELAVQTF-QVLRKI----GRHHLFSAGLVIGGKSVREEAEALSRMNILIGTPGRILQHL 185
Query: 169 STGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVD 227
Q+ F D+L++LVLDEAD ++ G++ D+ AL +P Q LL SAT S V
Sbjct: 186 D----QTHGFDVDNLQLLVLDEADRIMDLGFQRDVDALVQHLPTTRQTLLFSATQSKKVS 241
Query: 228 KLKKLILHNP-YILTLPEVGDVKDEVIPKNVQQFWISCSERDKXXXXXXXXXXXXVQKKA 286
L +L L +P Y+ E P +QQ +I +K K
Sbjct: 242 DLARLSLKDPEYVSVHAEA----TTATPSTLQQHYIVTPLPEKLDTLWGFIKANLKSKMV 297
Query: 287 LIFTNTIDMAFRLKLFLE-KFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATD 341
+ ++ + F + F + + GI ++ Q +RL + + F++ L ATD
Sbjct: 298 VFLSSGKQVRFVYESFRQMQPGIPLLHMHGRQKQLARLDVTKRFDSSKHACLFATD 353
Score = 121 (47.7 bits), Expect = 2.7e-30, Sum P(2) = 2.7e-30
Identities = 58/248 (23%), Positives = 106/248 (42%)
Query: 362 SKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVS 421
S KH A L + + RGIDF V V+ + P++ Y+HR+GRT R G +V +
Sbjct: 343 SSKH--ACLFATDVIARGIDFTGVDWVVQVDAPEDTDDYIHRVGRTARYEREGKAVIFLD 400
Query: 422 PDE----MKIFEEIKSFVGDDENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVR 477
P E +K E K + +DS + ++ ++S+ +++ DV K +
Sbjct: 401 PSEEAGMLKRLERKKVPITKVTAKDSKKKS-----IRDELQSICWKSHDVKYLAQKAFIS 455
Query: 478 ESRAQDLRNEILNSEKLKAHFEVNPXXXXXXXXXXXXXXXPPASHLRDVPDYLLDAKTQE 537
+RA E EK H E + + L P K ++
Sbjct: 456 YARAVHRATE--RDEK---HNENSDQVFKFDKLDLEGFAK--SMGLAGAPQIKFQ-KGED 507
Query: 538 ACKMVKLARAAM--GNKNSSRRQGPRRKFRKSDPLKSFSAEPTKRAGKGRMKREGRNGDD 595
+M RA + G+++ S PRR RK D +++ + + +R + + + RN +
Sbjct: 508 VKRMKNAPRAPLSSGSEDESGDDKPRR--RKKDEVRTKADKMFERTNQDVLSKHYRNLVE 565
Query: 596 TGKHKKKK 603
G++ +++
Sbjct: 566 DGENDEEE 573
>UNIPROTKB|F1NJ40 [details] [associations]
symbol:DDX42 "ATP-dependent RNA helicase DDX42"
species:9031 "Gallus gallus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0008104 "protein localization" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0008104 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 IPI:IPI00576529 OMA:QGVNNTA
GeneTree:ENSGT00610000086076 EMBL:AADN02056764
Ensembl:ENSGALT00000000811 ArrayExpress:F1NJ40 Uniprot:F1NJ40
Length = 946
Score = 297 (109.6 bits), Expect = 2.7e-30, Sum P(2) = 2.7e-30
Identities = 91/320 (28%), Positives = 155/320 (48%)
Query: 32 GLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNE 91
G D +L+H + K +PT IQ +P+ + G+D++ AKTGSGKT A++ P+L + ++
Sbjct: 261 GFDEQLMHQIRKSEYTQPTPIQCQGVPVAMSGRDMIGIAKTGSGKTAAFIWPMLIHIMDQ 320
Query: 92 SSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCK--GQV-QLKVVQLTSSMPASDLRA 148
+ P A+++ PTRELCQQ++SE CK G+ L+ V + +
Sbjct: 321 KELEPGDGPIAVIVCPTRELCQQIHSE-------CKRFGKAYNLRSVAVYGGGSMWEQAK 373
Query: 149 ALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAV 208
AL +IV+ TPG L V + + + LV DEAD + G+E ++++++
Sbjct: 374 ALQEGAEIVVCTPGR----LIDHVKKKATNLQRVTYLVFDEADRMFDMGFEYQVRSIASH 429
Query: 209 IPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKD------EVIPKNVQQF-W 261
+ Q LL SAT ++KL + IL +P + ++G+ + E+ P ++ W
Sbjct: 430 VRPDRQTLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEIFPSGPSKWNW 489
Query: 262 ISCSERDKXXXXXXXXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNS 321
++ R V KKA N ++A LK G+ L+ ++ Q+
Sbjct: 490 LT---RRLVEFTSSGSVLLFVTKKA----NAEELANNLKQEDHNLGL----LHGDMDQSE 538
Query: 322 RLHILEEFNAGLFDYLIATD 341
R ++ EF L+ATD
Sbjct: 539 RNKVISEFKKKGIPILVATD 558
Score = 117 (46.2 bits), Expect = 2.7e-30, Sum P(2) = 2.7e-30
Identities = 27/101 (26%), Positives = 54/101 (53%)
Query: 347 EKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGR 406
+ DQS+ + K K P L + RG+D ++ TVIN+++ ++ + HRIGR
Sbjct: 533 DMDQSERNKVISEFKKKGIPI--LVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGR 590
Query: 407 TGRAYNTGASVSLVSPDEMKIFEE-IKSFVGDDENEDSNII 446
TGRA G + +L++P + + +++ G +++ ++
Sbjct: 591 TGRAGEKGVAYTLLTPKDSNFAGDLVRNLEGANQHVSKELL 631
>ASPGD|ASPL0000065093 [details] [associations]
symbol:AN7659 species:162425 "Emericella nidulans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0005934 "cellular bud tip" evidence=IEA] [GO:0044614 "nuclear
pore cytoplasmic filaments" evidence=IEA] [GO:0005844 "polysome"
evidence=IEA] [GO:0003724 "RNA helicase activity" evidence=IEA]
[GO:0000822 "inositol hexakisphosphate binding" evidence=IEA]
[GO:0008186 "RNA-dependent ATPase activity" evidence=IEA]
[GO:0006406 "mRNA export from nucleus" evidence=IEA] [GO:0006415
"translational termination" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 GO:GO:0015031 GO:GO:0031965 GO:GO:0005643
GO:GO:0003723 EMBL:BN001304 EMBL:AACD01000130 GO:GO:0051028
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 HOGENOM:HOG000268797 InterPro:IPR014014
PROSITE:PS51195 RefSeq:XP_680928.1 ProteinModelPortal:Q5AVM1
EnsemblFungi:CADANIAT00000783 GeneID:2869488 KEGG:ani:AN7659.2
OMA:PQAICLA OrthoDB:EOG4B2X5R Uniprot:Q5AVM1
Length = 477
Score = 294 (108.6 bits), Expect = 2.9e-30, Sum P(2) = 2.9e-30
Identities = 88/315 (27%), Positives = 157/315 (49%)
Query: 31 LGLDLRLVHALNKKGIQKPTLIQQASIPLILEG--KDVVARAKTGSGKTFAYLLPLLHRL 88
LGLD R++ L+ +KP+ IQ+ ++PL++ K++V ++++G+GKT A++L +L RL
Sbjct: 74 LGLDPRILQGLSAMNFRKPSKIQERALPLLMGNPPKNLVGQSQSGTGKTAAFVLNILSRL 133
Query: 89 FNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRA 148
+ SS +++ P AL+L PTREL +Q+ + + + G + + +++PA
Sbjct: 134 -DLSSEQAQKTPQALILAPTRELARQIVGVIQVMGKFLDG------LHIGTAVPADTNAR 186
Query: 149 ALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSY-GYEDDLKALSA 207
+V+ TPG + + ++ + LK++VLDEAD +L G D + A
Sbjct: 187 PTRMEASVVVGTPGTVMDMIKKRIMVAAK----LKVIVLDEADNMLDQQGLGDQCIRVKA 242
Query: 208 VIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISC-SE 266
++PR Q +L SAT + V + LTL +E+ + ++Q ++ C SE
Sbjct: 243 LLPRDIQVVLFSATFPAHVHQYASKFAPAANELTLQH-----EELTVEGIKQLYLDCASE 297
Query: 267 RDKXXXXXXXXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHIL 326
DK V ++IF T A ++ + G A L + + R I+
Sbjct: 298 EDKYRTLVQLYGLLTVGS-SIIFVKTRASAVEIERRMVAEGHTVASLTGGIEGSQRDQII 356
Query: 327 EEFNAGLFDYLIATD 341
++F AG LI T+
Sbjct: 357 DQFRAGHAKVLITTN 371
Score = 104 (41.7 bits), Expect = 2.9e-30, Sum P(2) = 2.9e-30
Identities = 28/86 (32%), Positives = 44/86 (51%)
Query: 365 HPKAKLDSEFGVVRGIDFKNVHTVINFEMPQ-----------NAAGYVHRIGRTGRAYNT 413
H K + + + RGID V VIN+++P+ + Y+HRIGRTGR
Sbjct: 363 HAKVLITTNV-LARGIDVSTVSMVINYDIPELHQPPNRPRQADFQTYLHRIGRTGRFGRV 421
Query: 414 GASVSLVSP-DEMKIFEEIKSFVGDD 438
G S+S VS +E ++ +I+ + D
Sbjct: 422 GVSISFVSNREEWEMLNQIQKYFNTD 447
>UNIPROTKB|Q5R7D1 [details] [associations]
symbol:DDX42 "ATP-dependent RNA helicase DDX42"
species:9601 "Pongo abelii" [GO:0005634 "nucleus" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISS] [GO:0008104 "protein
localization" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0008104 GO:GO:0016607 GO:GO:0003723
GO:GO:0015030 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 HSSP:P09052
CTD:11325 HOVERGEN:HBG081425 KO:K12835 EMBL:CR860187
RefSeq:NP_001126368.1 UniGene:Pab.3212 ProteinModelPortal:Q5R7D1
GeneID:100173349 KEGG:pon:100173349 Uniprot:Q5R7D1
Length = 942
Score = 291 (107.5 bits), Expect = 2.9e-30, Sum P(3) = 2.9e-30
Identities = 86/311 (27%), Positives = 148/311 (47%)
Query: 32 GLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNE 91
G D +L+H + K +PT IQ +P+ L G+D++ AKTGSGKT A++ P+L + ++
Sbjct: 259 GFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLIHIMDQ 318
Query: 92 SSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQV-QLKVVQLTSSMPASDLRAAL 150
+ P A+++ PTRELCQQ+++E G+ L+ V + + AL
Sbjct: 319 KELEPGDGPIAVIVCPTRELCQQIHAEGKRF-----GKAYNLRSVAVYGGGSMWEQAKAL 373
Query: 151 AGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIP 210
+IV+ TPG L V + + + LV DEAD + G+E ++++++ +
Sbjct: 374 QEGAEIVVCTPGR----LIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQVRSIASHVR 429
Query: 211 RGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKX 270
Q LL SAT ++KL + IL +P + ++G+ ++V Q I S K
Sbjct: 430 PDRQTLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDV----TQIVEILHSGPSKW 485
Query: 271 XXXXXXXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFN 330
L+F A L L++ G +L+ ++ Q+ R ++ +F
Sbjct: 486 NWLTRRLVEFTSSGSVLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFK 545
Query: 331 AGLFDYLIATD 341
L+ATD
Sbjct: 546 KKDIPVLVATD 556
Score = 122 (48.0 bits), Expect = 2.9e-30, Sum P(3) = 2.9e-30
Identities = 31/111 (27%), Positives = 58/111 (52%)
Query: 347 EKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGR 406
+ DQS+ + K K P L + RG+D ++ TVIN+++ ++ + HRIGR
Sbjct: 531 DMDQSERNKVISDFKKKDIPV--LVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGR 588
Query: 407 TGRAYNTGASVSLVSPDEMKIFEE-IKSFVGDDENEDSNIIAPFPLLAQNA 456
TGRA G + +L++P + + +++ G +++ ++ L QNA
Sbjct: 589 TGRAGEKGVAYTLLTPKDSNFAGDLVRNLEGANQHVSKELL---DLAMQNA 636
Score = 43 (20.2 bits), Expect = 2.9e-30, Sum P(3) = 2.9e-30
Identities = 16/55 (29%), Positives = 24/55 (43%)
Query: 550 GNKNS-SRRQGPRRKFRKSDPLKSFSAEPTKRAGKGRMKREGRNGDDTGKHKKKK 603
GN++S S R G R D + E + R G E R+G G+H + +
Sbjct: 825 GNRHSDSPRHGDGG--RHGDGYRH--PESSSRHTDGHRHGENRHGGSAGRHGENR 875
Score = 38 (18.4 bits), Expect = 9.7e-30, Sum P(3) = 9.7e-30
Identities = 7/15 (46%), Positives = 10/15 (66%)
Query: 580 RAGKGRMKREGRNGD 594
R G+ R +GRNG+
Sbjct: 870 RHGENRGANDGRNGE 884
>WB|WBGene00006888 [details] [associations]
symbol:vbh-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0040010 "positive regulation of
growth rate" evidence=IMP] [GO:0032502 "developmental process"
evidence=IMP] [GO:0040035 "hermaphrodite genitalia development"
evidence=IMP] [GO:0042006 "masculinization of hermaphroditic
germ-line" evidence=IMP] [GO:0042127 "regulation of cell
proliferation" evidence=IMP] [GO:0040020 "regulation of meiosis"
evidence=IMP] [GO:0007281 "germ cell development" evidence=IMP]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0043186 "P granule"
evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0009792
GO:GO:0040010 GO:GO:0003676 GO:GO:0042127 GO:GO:0040035
GO:GO:0007281 GO:GO:0040020 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0043186 GeneTree:ENSGT00620000087942
HOGENOM:HOG000268804 KO:K11594 OMA:DELLMEN EMBL:FO081614
GO:GO:0042006 RefSeq:NP_001021793.1 UniGene:Cel.16952
ProteinModelPortal:Q65XX1 SMR:Q65XX1 IntAct:Q65XX1
MINT:MINT-6669731 STRING:Q65XX1 PaxDb:Q65XX1 PRIDE:Q65XX1
EnsemblMetazoa:Y54E10A.9c.1 EnsemblMetazoa:Y54E10A.9c.2
GeneID:171888 KEGG:cel:CELE_Y54E10A.9 UCSC:Y54E10A.9a CTD:171888
WormBase:Y54E10A.9c InParanoid:Q65XX1 NextBio:873115
ArrayExpress:Q65XX1 Uniprot:Q65XX1
Length = 660
Score = 279 (103.3 bits), Expect = 3.3e-30, Sum P(2) = 3.3e-30
Identities = 93/323 (28%), Positives = 149/323 (46%)
Query: 32 GLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLF-- 89
G ++ +N+ G KPT +Q+ SIP +L +D+++ A+TGSGKT A+LLP++ +
Sbjct: 145 GFGPAVMENVNRSGYSKPTPVQKHSIPTLLANRDLMSCAQTGSGKTAAFLLPIIQHILAG 204
Query: 90 --NESSP------KSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSM 141
+ P + P ALVL PTREL Q++ E K +Q ++
Sbjct: 205 GPDMVKPPAFTNGRRTYYPCALVLSPTRELAIQIHKEATKFSY--KSNIQTAILYGGREN 262
Query: 142 PASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDD 201
+ AG I+IATPG + + G + + LVLDEAD +L G+E
Sbjct: 263 YRDQVNRLRAGT-HILIATPGRLIDIIEQGFIGLAG----CRYLVLDEADRMLDMGFEPQ 317
Query: 202 LKAL--SAVIPRGCQCLLM-SATSSSDVDKLKKLILHNPYI-LTLPEVGDVKDEVIPKNV 257
++ + + P+ + M SAT ++ L K L + YI L + VG + N+
Sbjct: 318 IRKIVGQGMPPKTARTTAMFSATFPKEIQVLAKDFLKDNYIFLAVGRVGSTSE-----NI 372
Query: 258 QQFWISCSERDKXXXXXXXXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAEL 317
+Q + +E +K + L+F T A L FL + I+S ++ +L
Sbjct: 373 EQRLLWVNEMEKRSNLMEILMNEHSENLVLVFVETKRGANELAYFLNRQQIRSVSIHGDL 432
Query: 318 PQNSRLHILEEFNAGLFDYLIAT 340
Q R LE F +G L+AT
Sbjct: 433 KQIERERNLELFRSGQCPILVAT 455
Score = 130 (50.8 bits), Expect = 3.3e-30, Sum P(2) = 3.3e-30
Identities = 25/64 (39%), Positives = 38/64 (59%)
Query: 378 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGD 437
RG+D NV VIN+++P ++ YVHRIGRTGR N G + S + I ++K+ + +
Sbjct: 460 RGLDIPNVRHVINYDLPGDSDEYVHRIGRTGRCGNLGIATSFFNDKNRGIGRDLKNLIVE 519
Query: 438 DENE 441
E
Sbjct: 520 SNQE 523
>UNIPROTKB|F1RSJ7 [details] [associations]
symbol:DDX42 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0008104 "protein localization" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0008104 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 OMA:QGVNNTA
GeneTree:ENSGT00610000086076 EMBL:CU466402 EMBL:CU466386
Ensembl:ENSSSCT00000018821 Uniprot:F1RSJ7
Length = 941
Score = 295 (108.9 bits), Expect = 3.3e-30, Sum P(3) = 3.3e-30
Identities = 88/313 (28%), Positives = 150/313 (47%)
Query: 32 GLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNE 91
G D +L+H + K +PT IQ +P+ L G+D++ AKTGSGKT A++ P+L + ++
Sbjct: 259 GFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLIHIMDQ 318
Query: 92 SSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCK--GQV-QLKVVQLTSSMPASDLRA 148
+ P A+++ PTRELCQQ+++E CK G+ L+ V + +
Sbjct: 319 KELEPGDGPIAVIVCPTRELCQQIHAE-------CKRFGKAYNLRSVAVYGGGSMWEQAK 371
Query: 149 ALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAV 208
AL +IV+ TPG L V + + + LV DEAD + G+E ++++++
Sbjct: 372 ALQEGAEIVVCTPGR----LIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQVRSIASH 427
Query: 209 IPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERD 268
+ Q LL SAT ++KL + IL +P + ++G+ ++V Q I S
Sbjct: 428 VRPDRQTLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDV----TQIVEILHSGPS 483
Query: 269 KXXXXXXXXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEE 328
K L+F A L L++ G +L+ ++ Q+ R ++ +
Sbjct: 484 KWNWLTRRLVEFTSSGSVLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVISD 543
Query: 329 FNAGLFDYLIATD 341
F L+ATD
Sbjct: 544 FKKKDIPVLVATD 556
Score = 122 (48.0 bits), Expect = 3.3e-30, Sum P(3) = 3.3e-30
Identities = 31/111 (27%), Positives = 58/111 (52%)
Query: 347 EKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGR 406
+ DQS+ + K K P L + RG+D ++ TVIN+++ ++ + HRIGR
Sbjct: 531 DMDQSERNKVISDFKKKDIPV--LVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGR 588
Query: 407 TGRAYNTGASVSLVSPDEMKIFEE-IKSFVGDDENEDSNIIAPFPLLAQNA 456
TGRA G + +L++P + + +++ G +++ ++ L QNA
Sbjct: 589 TGRAGEKGVAYTLLTPKDSNFAGDLVRNLEGANQHVSKELL---DLAMQNA 636
Score = 38 (18.4 bits), Expect = 3.3e-30, Sum P(3) = 3.3e-30
Identities = 8/25 (32%), Positives = 14/25 (56%)
Query: 580 RAGKGRMKREGRNGDDTGKHKKKKS 604
R G+ R +GRNG+ + ++S
Sbjct: 877 RHGESRGASDGRNGESRKESCNRES 901
>CGD|CAL0003204 [details] [associations]
symbol:DBP2 species:5476 "Candida albicans" [GO:0005730
"nucleolus" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0005739 "mitochondrion" evidence=IEA] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IEA] [GO:0006364 "rRNA processing" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 CGD:CAL0003204 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0000184 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 EMBL:AACQ01000245
EMBL:AACQ01000246 RefSeq:XP_710694.1 RefSeq:XP_710708.1
ProteinModelPortal:Q59LU0 PRIDE:Q59LU0 GeneID:3647692
GeneID:3647705 KEGG:cal:CaO19.171 KEGG:cal:CaO19.7804 KO:K12823
Uniprot:Q59LU0
Length = 562
Score = 274 (101.5 bits), Expect = 3.3e-30, Sum P(2) = 3.3e-30
Identities = 86/305 (28%), Positives = 139/305 (45%)
Query: 37 LVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKS 96
++ + +G KPT IQ P+ L G+D++ A TGSGKT +Y LP + + + +
Sbjct: 138 VLQEVKDQGFPKPTPIQCQGWPMALSGRDMIGIAATGSGKTLSYCLPSIVHINAQPQLQY 197
Query: 97 KLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDI 156
P LVL PTREL Q+ +E + K +++ + P LA +I
Sbjct: 198 GDGPIVLVLAPTRELAVQIQTECS---KFGKSS-RIRNTCVYGGAPKGPQIRDLARGVEI 253
Query: 157 VIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCL 216
IATPG + L G K + LVLDEAD +L G+E ++ + I Q L
Sbjct: 254 CIATPGRLIDMLEAGKTNLKRVT----YLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTL 309
Query: 217 LMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKXXXXXXX 276
+ SAT +V +L + L++P +T+ + I + V+ S+RD+
Sbjct: 310 MWSATWPKEVQQLTRDYLNDPIQVTIGSLELAASHTITQLVEVI-DEFSKRDRLVKHLES 368
Query: 277 XXXXXVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDY 336
K L+F +T + +L G + ++ + QN R +L+EF G
Sbjct: 369 ALNEK-DNKILVFASTKRTCDEITTYLRSDGWPALAIHGDKEQNERDWVLDEFRKGKTSI 427
Query: 337 LIATD 341
++ATD
Sbjct: 428 MVATD 432
Score = 132 (51.5 bits), Expect = 3.3e-30, Sum P(2) = 3.3e-30
Identities = 31/82 (37%), Positives = 44/82 (53%)
Query: 347 EKDQSDEGGHVDS-RKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIG 405
+K+Q++ +D RK K D RGID K + VIN++MP N YVHRIG
Sbjct: 407 DKEQNERDWVLDEFRKGKTSIMVATDV---AARGIDVKGITHVINYDMPGNIEDYVHRIG 463
Query: 406 RTGRAYNTGASVSLVSPDEMKI 427
RTGR +G ++S + K+
Sbjct: 464 RTGRGGASGTAISFFTEGNSKL 485
>UNIPROTKB|Q3MSQ8 [details] [associations]
symbol:ddx4 "Probable ATP-dependent RNA helicase DDX4"
species:45623 "Pelophylax lessonae" [GO:0071546 "pi-body"
evidence=ISS] [GO:0071547 "piP-body" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0007275 GO:GO:0005524 GO:GO:0005634
GO:GO:0030154 GO:GO:0048477 GO:GO:0007283 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0071546
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 HSSP:P09052
HOVERGEN:HBG015893 GO:GO:0071547 EMBL:AJ841700
ProteinModelPortal:Q3MSQ8 SMR:Q3MSQ8 Uniprot:Q3MSQ8
Length = 724
Score = 273 (101.2 bits), Expect = 3.4e-30, Sum P(2) = 3.4e-30
Identities = 96/306 (31%), Positives = 147/306 (48%)
Query: 43 KKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLL-HRLFN--ESSPKSKLA 99
K G K T IQ+ SIP+I+ G+D++A A+TGSGKT A+LLP+L H + ESS L
Sbjct: 303 KSGYVKLTPIQKHSIPIIVAGRDLMACAQTGSGKTAAFLLPILAHLMVKGVESSAFQTLK 362
Query: 100 -PAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVI 158
P A+++ PTREL Q+Y + + G VV + L+ G +I+
Sbjct: 363 EPEAIIVAPTRELINQIYLDAR---KFSYGTCVRPVVIYGGTQMFHSLKQISEGC-NILC 418
Query: 159 ATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKAL--SAVIP--RGCQ 214
ATPG + L + + K L+ LVLDEAD +L G+ +D++ L S+ +P Q
Sbjct: 419 ATPG---RLLDV-IRKEKIGLTKLRYLVLDEADRMLDMGFREDIENLLKSSGMPSKEERQ 474
Query: 215 CLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKXXXXX 274
L+ SAT S + L + IL Y+ + VG V +V+Q I E K
Sbjct: 475 TLMFSATFPSSIQSLAREILKPDYLFVV--VGQVGGAC--SDVEQMVIEVDEFGKKDKLM 530
Query: 275 XXXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLF 334
++ ++F T A + FL + + S ++ + Q R L +F G
Sbjct: 531 EILQEIG-SERTMVFVKTKKKADFIATFLCQEKVPSTSIHGDREQKERETALRDFRTGQC 589
Query: 335 DYLIAT 340
++AT
Sbjct: 590 PVIVAT 595
Score = 138 (53.6 bits), Expect = 3.4e-30, Sum P(2) = 3.4e-30
Identities = 29/67 (43%), Positives = 39/67 (58%)
Query: 378 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSP---DEMKIFEEIKSF 434
RG+D +NV VINF++P + YVHRIGRTGR NTG ++S DE +I +
Sbjct: 600 RGLDIENVSYVINFDIPDDIDEYVHRIGRTGRCGNTGRAISFFDKRGDDEQRIARSLVKV 659
Query: 435 VGDDENE 441
+ D E
Sbjct: 660 LSDAHQE 666
>RGD|1562539 [details] [associations]
symbol:Ddx54 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 54"
species:10116 "Rattus norvegicus" [GO:0003714 "transcription
corepressor activity" evidence=ISO] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISO] [GO:0005102 "receptor binding" evidence=ISO]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA;ISO] [GO:0005730 "nucleolus" evidence=ISO] [GO:0006396
"RNA processing" evidence=ISO] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0016070 "RNA metabolic process"
evidence=ISO] [GO:0030331 "estrogen receptor binding" evidence=ISO]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012541 Pfam:PF00270 Pfam:PF00271 Pfam:PF08147
ProDom:PD024971 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
RGD:1562539 GO:GO:0005524 GO:GO:0003714 GO:GO:0005730 GO:GO:0003723
GO:GO:0006396 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00550000075100 IPI:IPI00193685
Ensembl:ENSRNOT00000001859 UCSC:RGD:1562539 OrthoDB:EOG469QTB
Uniprot:D3ZHY6
Length = 906
Score = 294 (108.6 bits), Expect = 4.0e-30, Sum P(2) = 4.0e-30
Identities = 98/311 (31%), Positives = 145/311 (46%)
Query: 31 LGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFN 90
+GL + + KKG + PT IQ+ +IP+IL+GKDVVA A+TGSGKT +LLP+ RL
Sbjct: 100 MGLSYPVFKGIMKKGYKVPTPIQRKTIPVILDGKDVVAMARTGSGKTACFLLPMFERLKA 159
Query: 91 ESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAAL 150
S+ + AL+L PTREL Q EL K LK + D AAL
Sbjct: 160 RSA---QTGARALILSPTRELALQTMKFTK---ELGKF-TGLKTALILGGDKMEDQFAAL 212
Query: 151 AGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIP 210
PDI+IATPG + + V + S++ +V DEAD L G+ + L+ + +P
Sbjct: 213 HENPDIIIATPG---RLVHVAVEMNLKLQ-SVEYVVFDEADRLFEMGFAEQLQEIIGRLP 268
Query: 211 RGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKX 270
G Q +L SAT + + + L P ++ L DV ++ + F++ +
Sbjct: 269 GGHQTVLFSATLPKLLVEFARAGLTEPVLIRL----DVDSKLNEQLKTSFFLVREDTKTA 324
Query: 271 XXXXXXXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFN 330
Q + ++F T A L L G+ A + + L Q +R L +F
Sbjct: 325 VLLYLLQNVVRPQDQNVVFVATKHHAEYLTELLTGQGVSCAHIYSALDQTARKINLAKFT 384
Query: 331 AGLFDYLIATD 341
LI TD
Sbjct: 385 HNKCSTLIVTD 395
Score = 118 (46.6 bits), Expect = 4.0e-30, Sum P(2) = 4.0e-30
Identities = 22/59 (37%), Positives = 35/59 (59%)
Query: 378 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVG 436
RG+D + VIN+ P ++HR+GR RA +G + SLV+PDE+ ++ F+G
Sbjct: 399 RGLDIPLLDNVINYSFPAKGKLFLHRVGRVARAGRSGTAYSLVAPDEVPYLLDLHLFLG 457
>UNIPROTKB|Q9KKW0 [details] [associations]
symbol:VCA0990 "ATP-dependent RNA helicase, DEAD box
family" species:243277 "Vibrio cholerae O1 biovar El Tor str.
N16961" [GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
[GO:0008152 "metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GenomeReviews:AE003853_GR InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HSSP:P10081 OMA:IGAKENA ProtClustDB:CLSK869861
EMBL:AE004426 PIR:H82390 RefSeq:NP_233374.1
ProteinModelPortal:Q9KKW0 DNASU:2612329 GeneID:2612329
KEGG:vch:VCA0990 PATRIC:20086502 Uniprot:Q9KKW0
Length = 428
Score = 274 (101.5 bits), Expect = 4.2e-30, Sum P(2) = 4.2e-30
Identities = 83/200 (41%), Positives = 115/200 (57%)
Query: 31 LGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFN 90
L L L+ AL K I +P+ IQ IP +L GKDV A A TGSGKT AY LPLL RL
Sbjct: 28 LALSADLIQAL-PKAITEPSAIQTLVIPAMLTGKDVFALANTGSGKTLAYGLPLLERL-- 84
Query: 91 ESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAAL 150
++SP+ + ALVLVPTREL QV SEV+ + G L + L + ++ + AL
Sbjct: 85 KTSPEQQ----ALVLVPTRELAMQV-SEVLTHVGTALG---LNTLCLCGGVDKTEQQNAL 136
Query: 151 AGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIP 210
A P+I++AT G + +G+ ++ + LVLDEAD LL G+ ++AL++
Sbjct: 137 AENPNILVATTGRLFDLTQSGLRLNR-----VTTLVLDEADRLLDMGFWPQVQALASQTA 191
Query: 211 RGCQCLLMSATSSSDVDKLK 230
Q ++ SAT S D+ KLK
Sbjct: 192 GVRQTVMCSATFSDDL-KLK 210
Score = 190 (71.9 bits), Expect = 8.3e-12, P = 8.3e-12
Identities = 74/241 (30%), Positives = 115/241 (47%)
Query: 102 ALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATP 161
ALVLVPTREL QV SEV+ + G L + L + ++ + ALA P+I++AT
Sbjct: 92 ALVLVPTRELAMQV-SEVLTHVGTALG---LNTLCLCGGVDKTEQQNALAENPNILVATT 147
Query: 162 GCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSAT 221
G + +G+ ++ + LVLDEAD LL G+ ++AL++ Q ++ SAT
Sbjct: 148 GRLFDLTQSGLRLNR-----VTTLVLDEADRLLDMGFWPQVQALASQTAGVRQTVMCSAT 202
Query: 222 SSSDVDKLK-KLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKXXXXXXXXXXX 280
S D+ KLK + ++ P +V + I + VQ+ ++ K
Sbjct: 203 FSDDL-KLKAQQLMRAP-----TQVSANPENSINQAVQETLYLVNKGSKTQALVALLKQH 256
Query: 281 XVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIAT 340
+ L+F + A L L K GI + +L+ + Q+ R L EF G LIAT
Sbjct: 257 Q-WPQVLVFIGAKENADSLTKKLNKAGIVATVLHGDKSQSEREAALAEFKNGTTQVLIAT 315
Query: 341 D 341
D
Sbjct: 316 D 316
Score = 121 (47.7 bits), Expect = 4.2e-30, Sum P(2) = 4.2e-30
Identities = 46/143 (32%), Positives = 70/143 (48%)
Query: 291 NTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHIL----EEFNA-GLFDYLIATDDTQT 345
N+I+ A + L+L G K+ L A L Q+ +L + NA L L T
Sbjct: 227 NSINQAVQETLYLVNKGSKTQALVALLKQHQWPQVLVFIGAKENADSLTKKLNKAGIVAT 286
Query: 346 K---EKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVH 402
+K QS+ + K+ + + ++ + RGI + + VINFE+P +A YVH
Sbjct: 287 VLHGDKSQSEREAALAEFKNGT-TQVLIATDL-LARGIHIELLPVVINFELPMHAETYVH 344
Query: 403 RIGRTGRAYNTGASVSLVSPDEM 425
R+GRT RA G ++SLV EM
Sbjct: 345 RVGRTARAGQHGIALSLVCHGEM 367
>TIGR_CMR|VC_A0990 [details] [associations]
symbol:VC_A0990 "ATP-dependent RNA helicase, DEAD box
family" species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008152
"metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GenomeReviews:AE003853_GR InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HSSP:P10081 OMA:IGAKENA ProtClustDB:CLSK869861
EMBL:AE004426 PIR:H82390 RefSeq:NP_233374.1
ProteinModelPortal:Q9KKW0 DNASU:2612329 GeneID:2612329
KEGG:vch:VCA0990 PATRIC:20086502 Uniprot:Q9KKW0
Length = 428
Score = 274 (101.5 bits), Expect = 4.2e-30, Sum P(2) = 4.2e-30
Identities = 83/200 (41%), Positives = 115/200 (57%)
Query: 31 LGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFN 90
L L L+ AL K I +P+ IQ IP +L GKDV A A TGSGKT AY LPLL RL
Sbjct: 28 LALSADLIQAL-PKAITEPSAIQTLVIPAMLTGKDVFALANTGSGKTLAYGLPLLERL-- 84
Query: 91 ESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAAL 150
++SP+ + ALVLVPTREL QV SEV+ + G L + L + ++ + AL
Sbjct: 85 KTSPEQQ----ALVLVPTRELAMQV-SEVLTHVGTALG---LNTLCLCGGVDKTEQQNAL 136
Query: 151 AGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIP 210
A P+I++AT G + +G+ ++ + LVLDEAD LL G+ ++AL++
Sbjct: 137 AENPNILVATTGRLFDLTQSGLRLNR-----VTTLVLDEADRLLDMGFWPQVQALASQTA 191
Query: 211 RGCQCLLMSATSSSDVDKLK 230
Q ++ SAT S D+ KLK
Sbjct: 192 GVRQTVMCSATFSDDL-KLK 210
Score = 190 (71.9 bits), Expect = 8.3e-12, P = 8.3e-12
Identities = 74/241 (30%), Positives = 115/241 (47%)
Query: 102 ALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATP 161
ALVLVPTREL QV SEV+ + G L + L + ++ + ALA P+I++AT
Sbjct: 92 ALVLVPTRELAMQV-SEVLTHVGTALG---LNTLCLCGGVDKTEQQNALAENPNILVATT 147
Query: 162 GCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSAT 221
G + +G+ ++ + LVLDEAD LL G+ ++AL++ Q ++ SAT
Sbjct: 148 GRLFDLTQSGLRLNR-----VTTLVLDEADRLLDMGFWPQVQALASQTAGVRQTVMCSAT 202
Query: 222 SSSDVDKLK-KLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKXXXXXXXXXXX 280
S D+ KLK + ++ P +V + I + VQ+ ++ K
Sbjct: 203 FSDDL-KLKAQQLMRAP-----TQVSANPENSINQAVQETLYLVNKGSKTQALVALLKQH 256
Query: 281 XVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIAT 340
+ L+F + A L L K GI + +L+ + Q+ R L EF G LIAT
Sbjct: 257 Q-WPQVLVFIGAKENADSLTKKLNKAGIVATVLHGDKSQSEREAALAEFKNGTTQVLIAT 315
Query: 341 D 341
D
Sbjct: 316 D 316
Score = 121 (47.7 bits), Expect = 4.2e-30, Sum P(2) = 4.2e-30
Identities = 46/143 (32%), Positives = 70/143 (48%)
Query: 291 NTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHIL----EEFNA-GLFDYLIATDDTQT 345
N+I+ A + L+L G K+ L A L Q+ +L + NA L L T
Sbjct: 227 NSINQAVQETLYLVNKGSKTQALVALLKQHQWPQVLVFIGAKENADSLTKKLNKAGIVAT 286
Query: 346 K---EKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVH 402
+K QS+ + K+ + + ++ + RGI + + VINFE+P +A YVH
Sbjct: 287 VLHGDKSQSEREAALAEFKNGT-TQVLIATDL-LARGIHIELLPVVINFELPMHAETYVH 344
Query: 403 RIGRTGRAYNTGASVSLVSPDEM 425
R+GRT RA G ++SLV EM
Sbjct: 345 RVGRTARAGQHGIALSLVCHGEM 367
>WB|WBGene00019219 [details] [associations]
symbol:H20J04.4 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0040010 "positive regulation of growth rate"
evidence=IMP] [GO:0002009 "morphogenesis of an epithelium"
evidence=IMP] [GO:0000003 "reproduction" evidence=IMP] [GO:0040035
"hermaphrodite genitalia development" evidence=IMP]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0002009 GO:GO:0040010
GO:GO:0003676 GO:GO:0040035 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K14778 HOGENOM:HOG000268802
GeneTree:ENSGT00670000098028 OMA:CQLLSMT EMBL:FO080156
RefSeq:NP_001040789.1 ProteinModelPortal:Q2WF63 SMR:Q2WF63
PaxDb:Q2WF63 EnsemblMetazoa:H20J04.4b GeneID:186756
KEGG:cel:CELE_H20J04.4 UCSC:H20J04.4a CTD:186756 WormBase:H20J04.4b
InParanoid:Q2WF63 NextBio:932876 ArrayExpress:Q2WF63 Uniprot:Q2WF63
Length = 561
Score = 288 (106.4 bits), Expect = 4.5e-30, Sum P(2) = 4.5e-30
Identities = 89/314 (28%), Positives = 141/314 (44%)
Query: 31 LGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFN 90
LG+ + L I+ T +Q A IP ILEG D++ A+TG+GKT A+ +P+L +L
Sbjct: 94 LGVCSWITQQLQTMQIKTATPVQAACIPKILEGSDILGCARTGTGKTLAFAIPILQKL-- 151
Query: 91 ESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAAL 150
P A L+L PTREL Q+ + AL + + LK + L
Sbjct: 152 SVDPYGIYA---LILTPTRELAFQIAEQFTALGK----PITLKCSVIVGGRSLIHQAREL 204
Query: 151 AGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIP 210
+ P +V+ATPG + + + ++ VLDEAD +L Y D LK + I
Sbjct: 205 SERPHVVVATPGRLADLIESDPDTIAKVFKKIQFFVLDEADRMLEGQYNDQLKPIFESIS 264
Query: 211 RGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISC--SERD 268
Q LL+SAT +++++ L ++ PY + G DE ++Q ++ C + +D
Sbjct: 265 EKRQTLLLSATITNNINMLHRVSTRKPYFFE--DKGK-DDESTVDRLEQKYVVCPVAVKD 321
Query: 269 KXXXXXXXXXXXXVQKKA-LIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILE 327
K + +IF T L E G + L++++PQ RL L
Sbjct: 322 AYLVYVVKNYSEKNPKSSVMIFAQTCRECQALAYMFEGLGFRVGSLHSQIPQKQRLAALS 381
Query: 328 EFNAGLFDYLIATD 341
F + +I TD
Sbjct: 382 AFRSKTLQVIICTD 395
Score = 115 (45.5 bits), Expect = 4.5e-30, Sum P(2) = 4.5e-30
Identities = 20/64 (31%), Positives = 40/64 (62%)
Query: 378 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGD 437
RG+D +V V+N +PQ Y+HR+GR+ RA G+++S V+ ++++ + ++ +G
Sbjct: 399 RGLDIPHVDLVVNHNVPQCPKTYIHRVGRSARAGRFGSALSFVTQYDVELLQAVEQVIGK 458
Query: 438 DENE 441
+E
Sbjct: 459 KLDE 462
>ZFIN|ZDB-GENE-050706-53 [details] [associations]
symbol:ddx42 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
42" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
ZFIN:ZDB-GENE-050706-53 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00610000086076
EMBL:BX324157 IPI:IPI00774497 Ensembl:ENSDART00000076209
Uniprot:E7F401
Length = 910
Score = 299 (110.3 bits), Expect = 4.9e-30, Sum P(3) = 4.9e-30
Identities = 86/313 (27%), Positives = 149/313 (47%)
Query: 32 GLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNE 91
G D +L+H + K +PT IQ +P+ L G+D + AKTGSGKT A++ P+L + ++
Sbjct: 263 GFDEQLMHQIRKSEYTQPTPIQCQGVPIALSGRDAIGIAKTGSGKTAAFIWPILVHIMDQ 322
Query: 92 SSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCK--GQVQ-LKVVQLTSSMPASDLRA 148
+ P A+++ PTRELCQQ+++E CK G+ L+ V + +
Sbjct: 323 KELEPGEGPIAVIVCPTRELCQQIHAE-------CKRFGKAYGLRSVAVYGGGSMWEQAK 375
Query: 149 ALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAV 208
AL +IV+ TPG L V + + + LV DEAD + G+E ++++++
Sbjct: 376 ALQEGAEIVVCTPGR----LIDHVKKKATSLQRVTFLVFDEADRMFDMGFEYQVRSIASH 431
Query: 209 IPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERD 268
+ Q LL SAT ++KL + IL +P + ++G+ +++ Q + S +D
Sbjct: 432 VRPDRQTLLFSATFRKKIEKLARDILVDPIRVVQGDIGEANEDI----TQIVEVLQSGQD 487
Query: 269 KXXXXXXXXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEE 328
K L+F L L + G +L+ ++ Q+ R ++ +
Sbjct: 488 KWGWLTRRLVEFTSAGSVLVFVTKKANCEELATNLIQEGYSLGLLHGDMDQSERNKVIAD 547
Query: 329 FNAGLFDYLIATD 341
F L+ATD
Sbjct: 548 FKKKNLPVLVATD 560
Score = 111 (44.1 bits), Expect = 4.9e-30, Sum P(3) = 4.9e-30
Identities = 25/101 (24%), Positives = 54/101 (53%)
Query: 347 EKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGR 406
+ DQS+ + K K P L + RG+D ++ TV+N+++ ++ + HRIGR
Sbjct: 535 DMDQSERNKVIADFKKKNLPV--LVATDVAARGLDIPSIRTVVNYDVARDIDTHTHRIGR 592
Query: 407 TGRAYNTGASVSLVSPDEMKIFEE-IKSFVGDDENEDSNII 446
TGRA G + +L++ + + +++ G +++ +++
Sbjct: 593 TGRAGEKGVAYTLLTTKDTSFAGDLVRNLEGANQSVSKDLL 633
Score = 42 (19.8 bits), Expect = 4.9e-30, Sum P(3) = 4.9e-30
Identities = 11/36 (30%), Positives = 17/36 (47%)
Query: 564 FRKSDPLKSFSAEPTKRAGKGRMKREGRNGDDTGKH 599
F + L S S + + K + E R+ DD G+H
Sbjct: 787 FSSAGTLSSISDSYSSSSSKEPSRSE-RHSDDRGRH 821
>UNIPROTKB|Q11039 [details] [associations]
symbol:deaD "Cold-shock DEAD box protein A homolog"
species:1773 "Mycobacterium tuberculosis" [GO:0005618 "cell wall"
evidence=IDA] [GO:0005829 "cytosol" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005829 GO:GO:0005524 GO:GO:0005618
GO:GO:0006355 EMBL:AE000516 GenomeReviews:AE000516_GR
GenomeReviews:AL123456_GR EMBL:BX842576 GO:GO:0006351 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268810 KO:K05592 InterPro:IPR005580 Pfam:PF03880
PIR:E70752 RefSeq:NP_215769.1 RefSeq:NP_335736.1
RefSeq:YP_006514628.1 ProteinModelPortal:Q11039 SMR:Q11039
PRIDE:Q11039 EnsemblBacteria:EBMYCT00000002426
EnsemblBacteria:EBMYCT00000070115 GeneID:13319832 GeneID:887069
GeneID:924778 KEGG:mtc:MT1292 KEGG:mtu:Rv1253 KEGG:mtv:RVBD_1253
PATRIC:18124606 TubercuList:Rv1253 OMA:LPQGMPK
ProtClustDB:CLSK791051 Uniprot:Q11039
Length = 563
Score = 268 (99.4 bits), Expect = 5.1e-30, Sum P(2) = 5.1e-30
Identities = 78/223 (34%), Positives = 114/223 (51%)
Query: 36 RLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPK 95
R++ A+ G + PT IQ A+IP ++ G DVV A+TG+GKT A+ +P+L ++
Sbjct: 23 RVLRAIGDVGYESPTAIQAATIPALMAGSDVVGLAQTGTGKTAAFAIPMLSKI----DIT 78
Query: 96 SKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAALAGPPD 155
SK+ P ALVLVPTREL QV +E Q+ + + SS A L A L
Sbjct: 79 SKV-PQALVLVPTRELALQV-AEAFGRYGAYLSQLNVLPIYGGSSY-AVQL-AGLRRGAQ 134
Query: 156 IVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQC 215
+V+ TPG M L L + LVLDEAD +L+ G+ DD++ + + P Q
Sbjct: 135 VVVGTPGRMIDHLERATLDLSR----VDFLVLDEADEMLTMGFADDVERILSETPEYKQV 190
Query: 216 LLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQ 258
L SAT + KL LH+P+ +T V + + +Q
Sbjct: 191 ALFSATMPPAIRKLSAKYLHDPFEVTCKAKTAVAENISQSYIQ 233
Score = 190 (71.9 bits), Expect = 4.0e-21, Sum P(2) = 4.0e-21
Identities = 71/246 (28%), Positives = 105/246 (42%)
Query: 96 SKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAALAGPPD 155
SK+ P ALVLVPTREL QV +E Q+ + + SS A L A L
Sbjct: 79 SKV-PQALVLVPTRELALQV-AEAFGRYGAYLSQLNVLPIYGGSSY-AVQL-AGLRRGAQ 134
Query: 156 IVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQC 215
+V+ TPG M L L + LVLDEAD +L+ G+ DD++ + + P Q
Sbjct: 135 VVVGTPGRMIDHLERATLDLSR----VDFLVLDEADEMLTMGFADDVERILSETPEYKQV 190
Query: 216 LLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKXXXXXX 275
L SAT + KL LH+P+ EV + +N+ Q +I + +
Sbjct: 191 ALFSATMPPAIRKLSAKYLHDPF-----EVTCKAKTAVAENISQSYIQVARKMDALTRVL 245
Query: 276 XXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFD 335
++F T + L G +A ++ ++PQ R + G D
Sbjct: 246 EVEPFEAM---IVFVRTKQATEEIAEKLRARGFSAAAISGDVPQAQRERTITALRDGDID 302
Query: 336 YLIATD 341
L+ATD
Sbjct: 303 ILVATD 308
Score = 137 (53.3 bits), Expect = 5.1e-30, Sum P(2) = 5.1e-30
Identities = 24/55 (43%), Positives = 39/55 (70%)
Query: 378 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIK 432
RG+D + + V+N+++P + YVHRIGRTGRA +GA++ VSP E+ + + I+
Sbjct: 312 RGLDVERISHVLNYDIPHDTESYVHRIGRTGRAGRSGAALIFVSPRELHLLKAIE 366
>UNIPROTKB|E1BJD2 [details] [associations]
symbol:DDX42 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0008104 "protein localization" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0008104 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 OMA:QGVNNTA
GeneTree:ENSGT00610000086076 EMBL:DAAA02049325 IPI:IPI00701280
Ensembl:ENSBTAT00000028046 Uniprot:E1BJD2
Length = 946
Score = 292 (107.8 bits), Expect = 6.0e-30, Sum P(3) = 6.0e-30
Identities = 89/319 (27%), Positives = 155/319 (48%)
Query: 32 GLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNE 91
G D +L+H + K +PT IQ +P+ L G+D++ AKTGSGKT A++ P+L + ++
Sbjct: 259 GFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLIHIMDQ 318
Query: 92 SSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCK--GQV-QLKVVQLTSSMPASDLRA 148
+ P A+++ PTRELCQQ+++E CK G+ L+ V + +
Sbjct: 319 KELEPGDGPIAVIVCPTRELCQQIHAE-------CKRFGKAYNLRSVAVYGGGSMWEQAK 371
Query: 149 ALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAV 208
AL +IV+ TPG L V + + + LV DEAD + G+E ++++++
Sbjct: 372 ALQEGAEIVVCTPGR----LIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQVRSIASH 427
Query: 209 IPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKD------EVIPKNVQQFWI 262
+ Q LL SAT ++KL + IL +P + ++G+ + E++ + W+
Sbjct: 428 VRPDRQTLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEILHSGSKWNWL 487
Query: 263 SCSERDKXXXXXXXXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSR 322
+ R V KKA N ++A LK + G +L+ ++ Q+ R
Sbjct: 488 T---RRLVEFTSSGSVLLFVTKKA----NAEELANNLK----QEGHNLGLLHGDMDQSER 536
Query: 323 LHILEEFNAGLFDYLIATD 341
++ +F L+ATD
Sbjct: 537 NKVISDFKKKDIPVLVATD 555
Score = 122 (48.0 bits), Expect = 6.0e-30, Sum P(3) = 6.0e-30
Identities = 31/111 (27%), Positives = 58/111 (52%)
Query: 347 EKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGR 406
+ DQS+ + K K P L + RG+D ++ TVIN+++ ++ + HRIGR
Sbjct: 530 DMDQSERNKVISDFKKKDIPV--LVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGR 587
Query: 407 TGRAYNTGASVSLVSPDEMKIFEE-IKSFVGDDENEDSNIIAPFPLLAQNA 456
TGRA G + +L++P + + +++ G +++ ++ L QNA
Sbjct: 588 TGRAGEKGVAYTLLTPKDSNFAGDLVRNLEGANQHVSKELL---DLAMQNA 635
Score = 40 (19.1 bits), Expect = 1.1e-21, Sum P(2) = 1.1e-21
Identities = 13/51 (25%), Positives = 26/51 (50%)
Query: 347 EKDQSDEGGHVDSRKSKKHPKAKLDSEFGV--VRGIDFKNVHTVINFEMPQ 395
E +++G + +SRK + ++K+D + V +D K T F +P+
Sbjct: 885 ESRGANDGRNGESRKESCNRESKMDPKVDSPKVDKMDSKTDKTPDGFAVPE 935
Score = 39 (18.8 bits), Expect = 6.0e-30, Sum P(3) = 6.0e-30
Identities = 8/25 (32%), Positives = 14/25 (56%)
Query: 580 RAGKGRMKREGRNGDDTGKHKKKKS 604
R G+ R +GRNG+ + ++S
Sbjct: 882 RHGESRGANDGRNGESRKESCNRES 906
Score = 37 (18.1 bits), Expect = 9.7e-30, Sum P(3) = 9.7e-30
Identities = 9/35 (25%), Positives = 15/35 (42%)
Query: 569 PLKSFSAEPTKRAGKGRMKREGRNGDDTGKHKKKK 603
P S ++R G E R+G G+H + +
Sbjct: 853 PESSSRHTDSRRHADGHPHGENRHGGGGGRHGESR 887
>UNIPROTKB|Q4K8U0 [details] [associations]
symbol:deaD "Cold-shock DEAD box protein A" species:220664
"Pseudomonas protegens Pf-5" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0006950 "response to stress"
evidence=ISS] [GO:0008026 "ATP-dependent helicase activity"
evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0006950
GO:GO:0006355 GO:GO:0003723 EMBL:CP000076 GenomeReviews:CP000076_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268810 KO:K05592 InterPro:IPR005580 Pfam:PF03880
OMA:LPQGMPK RefSeq:YP_261343.1 ProteinModelPortal:Q4K8U0
GeneID:3477377 KEGG:pfl:PFL_4251 PATRIC:19877913
ProtClustDB:CLSK867560 BioCyc:PFLU220664:GIX8-4286-MONOMER
Uniprot:Q4K8U0
Length = 557
Score = 276 (102.2 bits), Expect = 6.1e-30, Sum P(2) = 6.1e-30
Identities = 75/207 (36%), Positives = 111/207 (53%)
Query: 31 LGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFN 90
L L +V A+ G ++P+ IQQ SIP+IL G D++ +A+TG+GKT A+ LP+LHR+
Sbjct: 11 LELHPNIVAAVVATGYEEPSAIQQQSIPIILAGHDMIGQAQTGTGKTAAFALPILHRI-- 68
Query: 91 ESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAAL 150
P SK P AL+L PTREL QV + A K + VV + P A+
Sbjct: 69 --DP-SKREPQALILAPTRELALQVAT---AFETYAKQMPGVTVVAVYGGAPMGPQLKAI 122
Query: 151 AGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIP 210
IV+ATPG + C + + + ++ LVLDEAD +L G+ DDL+ + +P
Sbjct: 123 RNGAQIVVATPGRL--C--DHLRRDEKVLATVNHLVLDEADEMLKLGFMDDLEVIFKAMP 178
Query: 211 RGCQCLLMSATSSSDVDKLKKLILHNP 237
Q +L SAT + + + L +P
Sbjct: 179 ETRQTVLFSATLPQSIRAIAERHLKDP 205
Score = 200 (75.5 bits), Expect = 3.2e-21, Sum P(2) = 3.2e-21
Identities = 67/246 (27%), Positives = 106/246 (43%)
Query: 96 SKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAALAGPPD 155
SK P AL+L PTREL QV + A K + VV + P A+
Sbjct: 71 SKREPQALILAPTRELALQVAT---AFETYAKQMPGVTVVAVYGGAPMGPQLKAIRNGAQ 127
Query: 156 IVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQC 215
IV+ATPG + C + + + ++ LVLDEAD +L G+ DDL+ + +P Q
Sbjct: 128 IVVATPGRL--C--DHLRRDEKVLATVNHLVLDEADEMLKLGFMDDLEVIFKAMPETRQT 183
Query: 216 LLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKXXXXXX 275
+L SAT + + + L +P + + K + + ++Q + K
Sbjct: 184 VLFSATLPQSIRAIAERHLKDPKHVKIQS----KTQTVTA-IEQAHLLVHADQKTSAVLS 238
Query: 276 XXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFD 335
++F T L LE G K+A LN ++ QN R +++ G D
Sbjct: 239 LLEVEDFDA-LIMFVRTKQATLDLASALEAKGYKAAALNGDIAQNQRERVIDSLKDGRLD 297
Query: 336 YLIATD 341
++ATD
Sbjct: 298 IVVATD 303
Score = 127 (49.8 bits), Expect = 6.1e-30, Sum P(2) = 6.1e-30
Identities = 25/59 (42%), Positives = 36/59 (61%)
Query: 378 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVG 436
RG+D + V N +MP + YVHRIGRTGRA G ++ LV+P E ++ + I+ G
Sbjct: 307 RGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQVIERVTG 365
>TAIR|locus:2127043 [details] [associations]
symbol:RH8 "RNAhelicase-like 8" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISM]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA;ISS]
[GO:0016032 "viral reproduction" evidence=IMP] [GO:0019048
"virus-host interaction" evidence=IPI] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0019048 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0006417
GO:GO:0006397 GO:GO:0003723 EMBL:AF058919 EMBL:AL161472
GO:GO:0000932 GO:GO:0051028 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 HOGENOM:HOG000268797
KO:K12614 InterPro:IPR014014 PROSITE:PS51195 OMA:QFMEKHL
ProtClustDB:CLSN2683443 EMBL:AJ010460 EMBL:AY080837 EMBL:AY113985
IPI:IPI00531108 PIR:T01230 PIR:T51741 RefSeq:NP_191975.2
RefSeq:NP_849535.1 UniGene:At.25593 UniGene:At.67100
UniGene:At.71300 ProteinModelPortal:Q8RXK6 SMR:Q8RXK6 STRING:Q8RXK6
PaxDb:Q8RXK6 PRIDE:Q8RXK6 EnsemblPlants:AT4G00660.1
EnsemblPlants:AT4G00660.2 GeneID:828042 KEGG:ath:AT4G00660
GeneFarm:919 TAIR:At4g00660 InParanoid:Q8RXK6 PhylomeDB:Q8RXK6
Genevestigator:Q8RXK6 GermOnline:AT4G00660 Uniprot:Q8RXK6
Length = 505
Score = 275 (101.9 bits), Expect = 6.8e-30, Sum P(2) = 6.8e-30
Identities = 72/210 (34%), Positives = 116/210 (55%)
Query: 33 LDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNES 92
L L+ + +KG ++P+ IQ+ SIP+ L G+D++ARAK G+GKT A+ +P+L ++ ++
Sbjct: 138 LKRELLMGIYEKGFERPSPIQEESIPIALTGRDILARAKNGTGKTAAFCIPVLEKIDQDN 197
Query: 93 SPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAALAG 152
+ A+++VPTREL Q S+V EL K ++++V+ T D L
Sbjct: 198 N-----VIQAVIIVPTRELALQT-SQVCK--ELGK-HLKIQVMVTTGGTSLKDDIMRLYQ 248
Query: 153 PPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRG 212
P +++ TPG + GV K S +LV+DEAD LLS ++ ++ L + +P
Sbjct: 249 PVHLLVGTPGRILDLTKKGVCVLKDCS----VLVMDEADKLLSQEFQPSVEHLISFLPES 304
Query: 213 CQCLLMSATSSSDVDKLKKLILHNPYILTL 242
Q L+ SAT V K L NPY++ L
Sbjct: 305 RQILMFSATFPVTVKDFKDRFLTNPYVINL 334
Score = 221 (82.9 bits), Expect = 1.4e-23, Sum P(2) = 1.4e-23
Identities = 69/240 (28%), Positives = 113/240 (47%)
Query: 102 ALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATP 161
A+++VPTREL Q S+V EL K ++++V+ T D L P +++ TP
Sbjct: 202 AVIIVPTRELALQT-SQVCK--ELGK-HLKIQVMVTTGGTSLKDDIMRLYQPVHLLVGTP 257
Query: 162 GCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSAT 221
G + GV K S +LV+DEAD LLS ++ ++ L + +P Q L+ SAT
Sbjct: 258 GRILDLTKKGVCVLKDCS----VLVMDEADKLLSQEFQPSVEHLISFLPESRQILMFSAT 313
Query: 222 SSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKXXXXXXXXXXXX 281
V K L NPY++ L DE+ K + QF+ ER K
Sbjct: 314 FPVTVKDFKDRFLTNPYVINL------MDELTLKGITQFYAFVEERQKIHCLNTLFSKLQ 367
Query: 282 VQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATD 341
+ + ++IF N+++ L + + G ++A++ Q+ R + +F G L+ TD
Sbjct: 368 INQ-SIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTD 426
Score = 125 (49.1 bits), Expect = 6.8e-30, Sum P(2) = 6.8e-30
Identities = 24/61 (39%), Positives = 41/61 (67%)
Query: 378 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGD 437
RGID + V+ VINF+ P+NA Y+HR+GR+GR + G +V+L++ ++ I+ +G
Sbjct: 430 RGIDIQAVNVVINFDFPKNAETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGT 489
Query: 438 D 438
+
Sbjct: 490 E 490
Score = 38 (18.4 bits), Expect = 8.5e-21, Sum P(2) = 8.5e-21
Identities = 6/28 (21%), Positives = 16/28 (57%)
Query: 310 SAILNAELPQNSRLHILEEFNAGLFDYL 337
+ ++N + P+N+ ++ +G F +L
Sbjct: 438 NVVINFDFPKNAETYLHRVGRSGRFGHL 465
>CGD|CAL0005460 [details] [associations]
symbol:DBP3 species:5476 "Candida albicans" [GO:0005730
"nucleolus" evidence=IEA] [GO:0030687 "preribosome, large subunit
precursor" evidence=IEA] [GO:0000464 "endonucleolytic cleavage in
ITS1 upstream of 5.8S rRNA from tricistronic rRNA transcript
(SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA] [GO:0008186
"RNA-dependent ATPase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 CGD:CAL0005460
GO:GO:0005524 GO:GO:0005730 GO:GO:0003723 EMBL:AACQ01000001
EMBL:AACQ01000002 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 RefSeq:XP_723365.1 RefSeq:XP_723554.1
ProteinModelPortal:Q5APT8 STRING:Q5APT8 GeneID:3634868
GeneID:3635070 KEGG:cal:CaO19.12334 KEGG:cal:CaO19.4870 KO:K14811
Uniprot:Q5APT8
Length = 564
Score = 287 (106.1 bits), Expect = 7.7e-30, Sum P(2) = 7.7e-30
Identities = 97/320 (30%), Positives = 154/320 (48%)
Query: 31 LGLD-LRLVHALNKK--GIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHR 87
L D ++L A+ K KPT IQ S P +L GKDV+ A+TGSGKTFA+ +P ++
Sbjct: 155 LSFDQVQLTSAITSKLSKFDKPTPIQSVSWPFLLSGKDVIGVAETGSGKTFAFGVPAINN 214
Query: 88 LFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLR 147
+ + K+ + L + PTREL Q+Y LIEL + V + + D
Sbjct: 215 IITTGNTKTL---SVLCISPTRELALQIYDN---LIELTADS-GVNCVAVYGGVSKDDQI 267
Query: 148 AALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKAL-S 206
+ ++V+ATPG + ++ G + + LVLDEAD +L G+E+D+K + S
Sbjct: 268 RKIK-TANVVVATPGRLVDLINDGAINL----GKVNYLVLDEADRMLEKGFEEDIKTIIS 322
Query: 207 AVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIP-KNVQQFWISCS 265
Q L+ +AT +V +L +++P +T VGD +DE+ K + Q +
Sbjct: 323 NTSNSERQTLMFTATWPKEVRELANNFMNSPVKVT---VGD-RDELSANKRITQVVEVIN 378
Query: 266 ERDKXXXXXXXXXXXXVQK----KALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNS 321
+ DK + K LIF A R++ FL++ A ++ +L Q
Sbjct: 379 KFDKEKKLIQLLRKYNANESSDNKILIFALYKKEASRIENFLKRNRFSVAAIHGDLSQQQ 438
Query: 322 RLHILEEFNAGLFDYLIATD 341
R L F +G + L+ATD
Sbjct: 439 RTAALSAFKSGQSNLLLATD 458
Score = 114 (45.2 bits), Expect = 7.7e-30, Sum P(2) = 7.7e-30
Identities = 24/47 (51%), Positives = 28/47 (59%)
Query: 378 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDE 424
RG+D NV VIN P YVHRIGRTGRA G + +L + DE
Sbjct: 462 RGLDIPNVKVVINLTFPLTIEDYVHRIGRTGRAGAKGTAHTLFTEDE 508
>UNIPROTKB|F1NL04 [details] [associations]
symbol:DDX4 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0000237 "leptotene" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0007141 "male meiosis I"
evidence=IEA] [GO:0007283 "spermatogenesis" evidence=IEA]
[GO:0030317 "sperm motility" evidence=IEA] [GO:0032880 "regulation
of protein localization" evidence=IEA] [GO:0033391 "chromatoid
body" evidence=IEA] [GO:0048471 "perinuclear region of cytoplasm"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0048471 GO:GO:0032880 GO:GO:0003676 GO:GO:0030317
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0033391
GO:GO:0007141 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 GO:GO:0000237 EMBL:AADN02054551
EMBL:AADN02054552 EMBL:AADN02054553 IPI:IPI00578446
Ensembl:ENSGALT00000038830 Uniprot:F1NL04
Length = 542
Score = 269 (99.8 bits), Expect = 8.2e-30, Sum P(2) = 8.2e-30
Identities = 92/310 (29%), Positives = 152/310 (49%)
Query: 41 LNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNE----SSPKS 96
++K G K T +Q+ SIP+I G+D+++ A+TGSGKT A+LLP++ R+ + S+ +
Sbjct: 182 ISKTGYSKLTPVQKHSIPVIQAGRDLMSCAQTGSGKTAAFLLPIVDRMMKDGVTASAFQK 241
Query: 97 KLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDI 156
+ P +++ PTREL Q++ E + G VV + +R + G +I
Sbjct: 242 QQEPQCIIVAPTRELINQIFLEARKFVY---GTCIRPVVIYGGTQTGHSIRQIMQGC-NI 297
Query: 157 VIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAV--IPRGC- 213
+ ATPG + + G + S + +K LVLDEAD +L G+ D+K L + +P
Sbjct: 298 LCATPGRLLDIIEKGKI---SLVE-VKYLVLDEADRMLDMGFGLDMKKLISYPEMPSKDR 353
Query: 214 -QCLLMSATSSSDVDKLKKLILHNPYI-LTLPEV-GDVKDEVIPKNVQQFWISCSERDKX 270
Q L+ SAT +V +L L YI L + G D + +N+ Q S+RDK
Sbjct: 354 RQTLMFSATFPEEVQRLAGEFLKTDYIFLVIGNTCGACSD--VQQNILQV-PRLSKRDKL 410
Query: 271 XXXXXXXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFN 330
++ ++F +T A L FL + + S ++ + Q R L +F
Sbjct: 411 IEILQSTGG----ERTMVFVDTKKKADYLAAFLCQENLPSTSIHGDREQREREIALRDFR 466
Query: 331 AGLFDYLIAT 340
+G L+AT
Sbjct: 467 SGKCQILVAT 476
Score = 133 (51.9 bits), Expect = 8.2e-30, Sum P(2) = 8.2e-30
Identities = 25/41 (60%), Positives = 30/41 (73%)
Query: 378 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVS 418
RG+D +NV VINF++P YVHRIGRTGR NTG +VS
Sbjct: 481 RGLDIENVQHVINFDLPNTIEDYVHRIGRTGRCGNTGKAVS 521
>UNIPROTKB|E1C8R1 [details] [associations]
symbol:DDX6 "Probable ATP-dependent RNA helicase DDX6"
species:9031 "Gallus gallus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GeneTree:ENSGT00530000063986 KO:K12614 InterPro:IPR014014
PROSITE:PS51195 UniGene:Gga.2331 CTD:1656 EMBL:AADN02058042
EMBL:AADN02058043 IPI:IPI00818395 RefSeq:NP_001006319.2
PRIDE:E1C8R1 Ensembl:ENSGALT00000040594 GeneID:419783
KEGG:gga:419783 NextBio:20822787 ArrayExpress:E1C8R1 Uniprot:E1C8R1
Length = 483
Score = 272 (100.8 bits), Expect = 8.6e-30, Sum P(2) = 8.6e-30
Identities = 77/212 (36%), Positives = 115/212 (54%)
Query: 33 LDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNES 92
L L+ + + G +KP+ IQ+ SIP+ L G+D++ARAK G+GK+ AYL+PLL RL
Sbjct: 103 LKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERL---D 159
Query: 93 SPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAALAG 152
K + A+V+VPTREL QV S++ I++ K KV+ T D L
Sbjct: 160 LKKDNIQ--AMVIVPTRELALQV-SQIC--IQVSKHMGGAKVMATTGGTNLRDDIMRLDD 214
Query: 153 PPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRG 212
+VIATPG + + GV + + ++++VLDEA+ LLS + ++ + +P+
Sbjct: 215 TVHVVIATPGRILDLIKKGVAKV----EHVQMIVLDEANKLLSQDFVQIMEDIILTLPKN 270
Query: 213 CQCLLMSATSSSDVDKLKKLILHNPYILTLPE 244
Q LL SAT V K L PY + L E
Sbjct: 271 RQILLYSATFPLSVQKFMNSHLQKPYEINLME 302
Score = 207 (77.9 bits), Expect = 3.6e-22, Sum P(2) = 3.6e-22
Identities = 69/240 (28%), Positives = 111/240 (46%)
Query: 102 ALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATP 161
A+V+VPTREL QV S++ I++ K KV+ T D L +VIATP
Sbjct: 167 AMVIVPTRELALQV-SQIC--IQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATP 223
Query: 162 GCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSAT 221
G + + GV + + ++++VLDEA+ LLS + ++ + +P+ Q LL SAT
Sbjct: 224 GRILDLIKKGVAKV----EHVQMIVLDEANKLLSQDFVQIMEDIILTLPKNRQILLYSAT 279
Query: 222 SSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKXXXXXXXXXXXX 281
V K L PY + L E E+ K V Q++ +ER K
Sbjct: 280 FPLSVQKFMNSHLQKPYEINLME------ELTLKGVTQYYAYVTERQKVHCLNTLFSRLQ 333
Query: 282 VQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATD 341
+ + ++IF N+ L + + G ++A++ Q R + +F GL L+ TD
Sbjct: 334 INQ-SIIFCNSSQRVELLAKKISQLGYSCFYIHAKMRQEHRNRVFHDFRNGLCRNLVCTD 392
Score = 126 (49.4 bits), Expect = 8.6e-30, Sum P(2) = 8.6e-30
Identities = 30/90 (33%), Positives = 50/90 (55%)
Query: 378 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGD 437
RGID + V+ VINF+ P+ A Y+HRIGR+GR + G +++L++ D+ + I+ +G
Sbjct: 396 RGIDIQAVNVVINFDFPKLAETYLHRIGRSGRFGHLGLAINLITYDDRFNLKSIEEQLGT 455
Query: 438 DENEDSNIIAPFPLLAQNAVESLRYRAEDV 467
+ I P P ++ Y +E V
Sbjct: 456 E-------IKPIPSNIDKSLYVAEYHSEPV 478
>TAIR|locus:2041549 [details] [associations]
symbol:AT2G42520 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA;ISS] [GO:0005777 "peroxisome" evidence=IDA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0005777 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
EMBL:AC007087 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268804 KO:K11594 ProtClustDB:CLSN2683925
EMBL:BT004111 IPI:IPI00545939 PIR:H84854 RefSeq:NP_181780.1
UniGene:At.43442 ProteinModelPortal:Q84W89 SMR:Q84W89 IntAct:Q84W89
PaxDb:Q84W89 PRIDE:Q84W89 EnsemblPlants:AT2G42520.1 GeneID:818852
KEGG:ath:AT2G42520 GeneFarm:1013 TAIR:At2g42520 InParanoid:Q84W89
OMA:ADSENTG PhylomeDB:Q84W89 Genevestigator:Q84W89
GermOnline:AT2G42520 Uniprot:Q84W89
Length = 633
Score = 291 (107.5 bits), Expect = 1.1e-29, Sum P(2) = 1.1e-29
Identities = 89/306 (29%), Positives = 146/306 (47%)
Query: 48 KPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNESS---PKSK--LAPAA 102
KPT +Q+ +IP++LEG+D++A A+TGSGKT A+ P++ + + P+ + P A
Sbjct: 181 KPTPVQRHAIPILLEGRDLMACAQTGSGKTAAFCFPIISGIMKDQHVQRPRGSRTVYPLA 240
Query: 103 LVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPG 162
++L PTREL Q++ E Q +KVV P + L DI++ATPG
Sbjct: 241 VILSPTRELASQIHDEAKKF----SYQTGVKVVVAYGGTPINQQLRELERGVDILVATPG 296
Query: 163 CMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVI---PRGC-QCLLM 218
+ L +++ ++ L LDEAD +L G+E ++ + + PRG Q LL
Sbjct: 297 RLNDLLE----RARVSMQMIRFLALDEADRMLDMGFEPQIRKIVEQMDMPPRGVRQTLLF 352
Query: 219 SATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKXXXXXXXXX 278
SAT ++ +L L N L + VG D ++ + +F + +R
Sbjct: 353 SATFPREIQRLAADFLANYIFLAVGRVGSSTDLIVQR--VEFVLDSDKRSHLMDLLHAQR 410
Query: 279 XXXVQKK---ALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFD 335
+Q K L+F T A L+ +L G + ++ + Q R L+ F +G
Sbjct: 411 ENGIQGKQALTLVFVETKRGADSLENWLCINGFPATSIHGDRTQQEREVALKAFKSGRTP 470
Query: 336 YLIATD 341
L+ATD
Sbjct: 471 ILVATD 476
Score = 111 (44.1 bits), Expect = 1.1e-29, Sum P(2) = 1.1e-29
Identities = 21/64 (32%), Positives = 35/64 (54%)
Query: 378 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGD 437
RG+D +V V+NF++P + YVHRIGRTGRA +G + + + + + + +
Sbjct: 480 RGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNDGNTSLARPLAELMQE 539
Query: 438 DENE 441
E
Sbjct: 540 ANQE 543
>UNIPROTKB|F1N991 [details] [associations]
symbol:DDX4 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000237 "leptotene"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0007141 "male
meiosis I" evidence=IEA] [GO:0007283 "spermatogenesis"
evidence=IEA] [GO:0030317 "sperm motility" evidence=IEA]
[GO:0032880 "regulation of protein localization" evidence=IEA]
[GO:0033391 "chromatoid body" evidence=IEA] [GO:0048471
"perinuclear region of cytoplasm" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0048471 GO:GO:0032880 GO:GO:0003676
GO:GO:0030317 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0033391 GO:GO:0007141 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00620000087942 GO:GO:0000237
OMA:GINFDKF EMBL:AADN02054551 EMBL:AADN02054552 EMBL:AADN02054553
IPI:IPI00819436 ProteinModelPortal:F1N991
Ensembl:ENSGALT00000023724 Uniprot:F1N991
Length = 568
Score = 269 (99.8 bits), Expect = 1.1e-29, Sum P(2) = 1.1e-29
Identities = 92/310 (29%), Positives = 152/310 (49%)
Query: 41 LNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNE----SSPKS 96
++K G K T +Q+ SIP+I G+D+++ A+TGSGKT A+LLP++ R+ + S+ +
Sbjct: 182 ISKTGYSKLTPVQKHSIPVIQAGRDLMSCAQTGSGKTAAFLLPIVDRMMKDGVTASAFQK 241
Query: 97 KLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDI 156
+ P +++ PTREL Q++ E + G VV + +R + G +I
Sbjct: 242 QQEPQCIIVAPTRELINQIFLEARKFVY---GTCIRPVVIYGGTQTGHSIRQIMQGC-NI 297
Query: 157 VIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAV--IPRGC- 213
+ ATPG + + G + S + +K LVLDEAD +L G+ D+K L + +P
Sbjct: 298 LCATPGRLLDIIEKGKI---SLVE-VKYLVLDEADRMLDMGFGLDMKKLISYPEMPSKDR 353
Query: 214 -QCLLMSATSSSDVDKLKKLILHNPYI-LTLPEV-GDVKDEVIPKNVQQFWISCSERDKX 270
Q L+ SAT +V +L L YI L + G D + +N+ Q S+RDK
Sbjct: 354 RQTLMFSATFPEEVQRLAGEFLKTDYIFLVIGNTCGACSD--VQQNILQV-PRLSKRDKL 410
Query: 271 XXXXXXXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFN 330
++ ++F +T A L FL + + S ++ + Q R L +F
Sbjct: 411 IEILQSTGG----ERTMVFVDTKKKADYLAAFLCQENLPSTSIHGDREQREREIALRDFR 466
Query: 331 AGLFDYLIAT 340
+G L+AT
Sbjct: 467 SGKCQILVAT 476
Score = 133 (51.9 bits), Expect = 1.1e-29, Sum P(2) = 1.1e-29
Identities = 25/41 (60%), Positives = 30/41 (73%)
Query: 378 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVS 418
RG+D +NV VINF++P YVHRIGRTGR NTG +VS
Sbjct: 481 RGLDIENVQHVINFDLPNTIEDYVHRIGRTGRCGNTGKAVS 521
>UNIPROTKB|J9NU36 [details] [associations]
symbol:EIF4A1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 GeneTree:ENSGT00530000062880 EMBL:AAEX03006506
EMBL:AAEX03006505 Ensembl:ENSCAFT00000049437 Uniprot:J9NU36
Length = 423
Score = 262 (97.3 bits), Expect = 1.2e-29, Sum P(2) = 1.2e-29
Identities = 85/296 (28%), Positives = 146/296 (49%)
Query: 49 PTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPT 108
P Q+A +P I +G DV+A+A++G+GKT + + +L ++ E K A ALVL PT
Sbjct: 73 PPTRQRAILPCI-KGYDVIAQAQSGTGKTATFAISILQQI--ELDLK---ATQALVLAPT 126
Query: 109 RELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCL 168
REL QQ+ VMAL + + + ++++ P I++ TPG + L
Sbjct: 127 RELAQQIQKVVMALGDYMGASCHACI---GGTNVRAEVQKLQMEAPHIIVGTPGRVFDML 183
Query: 169 STGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDK 228
+ L K +K+ VLDEAD +LS G++D + + + Q +L+SAT SDV +
Sbjct: 184 NRRYLSPKY----IKMFVLDEADEMLSRGFKDQIYDIFQKLNSNTQVVLLSATMPSDVLE 239
Query: 229 LKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKXXXXXXXXXXXXVQKKALI 288
+ K + +P + + K+E+ + ++QF+I+ + +A+I
Sbjct: 240 VTKKFMRDPIRILVK-----KEELTLEGIRQFYINVEREEWKLDTLCDLYETLTITQAVI 294
Query: 289 FTNT---IDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATD 341
F NT +D K+ F + + ++ ++ Q R I+ EF +G LI TD
Sbjct: 295 FINTRRKVDWLTE-KMHARDFTVSA--MHGDMDQKERDVIMREFRSGSSRVLITTD 347
Score = 131 (51.2 bits), Expect = 1.2e-29, Sum P(2) = 1.2e-29
Identities = 22/59 (37%), Positives = 39/59 (66%)
Query: 376 VVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSF 434
+ RGID + V VIN+++P N Y+HRIGR GR G ++++V+ ++ + +I++F
Sbjct: 349 LARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEEDKRTLRDIETF 407
>ZFIN|ZDB-GENE-021220-2 [details] [associations]
symbol:ddx54 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
54" species:7955 "Danio rerio" [GO:0016818 "hydrolase activity,
acting on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012541 Pfam:PF00270 Pfam:PF00271 Pfam:PF08147
ProDom:PD024971 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
ZFIN:ZDB-GENE-021220-2 GO:GO:0005524 GO:GO:0005634 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 KO:K14808
HOGENOM:HOG000246455 GeneTree:ENSGT00550000075100 CTD:79039
HOVERGEN:HBG051333 OrthoDB:EOG469QTB EMBL:CU929062 EMBL:FP236447
EMBL:AY099535 IPI:IPI00481864 RefSeq:NP_775375.1 UniGene:Dr.18320
STRING:Q8JGR2 Ensembl:ENSDART00000026416 Ensembl:ENSDART00000128587
GeneID:286777 KEGG:dre:286777 NextBio:20806437 Uniprot:Q8JGR2
Length = 862
Score = 293 (108.2 bits), Expect = 1.2e-29, Sum P(3) = 1.2e-29
Identities = 97/313 (30%), Positives = 149/313 (47%)
Query: 31 LGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFN 90
+GL + + KKG + PT IQ+ +IP+IL+GKDVVA A+TGSGKT A+L+PL +L
Sbjct: 83 MGLSYPVYKGIMKKGYKVPTPIQRKTIPVILDGKDVVAMARTGSGKTAAFLVPLFEKL-- 140
Query: 91 ESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAAL 150
+P+++ AL+L PTREL Q EL K L+ + D AAL
Sbjct: 141 -KAPQAQTGARALILTPTRELALQTMKFTK---ELGKF-TGLRTALILGGDSMDDQFAAL 195
Query: 151 AGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLKALSAVI 209
PDI+I TPG + V+Q + S++ +V DEAD L G+ + L+ + +
Sbjct: 196 HENPDIIIGTPGRLMH-----VIQEMNLKLQSVEYVVFDEADRLFEMGFAEQLQEIIRRL 250
Query: 210 PRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDK 269
P Q LL SAT + + + L P ++ L DV D + + ++ + S DK
Sbjct: 251 PDARQTLLFSATLPKLIVEFARAGLTEPVLIRL----DV-DTKLSEQLKLSFFSLRLDDK 305
Query: 270 -XXXXXXXXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEE 328
Q++ ++F T LK L G+ + + + L Q +R +
Sbjct: 306 PALLLHLLRNVVKPQEQTVVFVATKHHVEYLKELLSAEGVDCSCIYSALDQTARKISIGR 365
Query: 329 FNAGLFDYLIATD 341
F L+ TD
Sbjct: 366 FVHRKVMLLLVTD 378
Score = 113 (44.8 bits), Expect = 1.2e-29, Sum P(3) = 1.2e-29
Identities = 23/59 (38%), Positives = 33/59 (55%)
Query: 378 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVG 436
RGID + VIN+ P ++HR+GR RA G + SLV PDE+ ++ F+G
Sbjct: 382 RGIDIPLLDNVINYNFPCKPKLFLHRVGRVARAGRGGTAYSLVCPDEVPYLYDLHLFLG 440
Score = 42 (19.8 bits), Expect = 1.2e-29, Sum P(3) = 1.2e-29
Identities = 16/62 (25%), Positives = 28/62 (45%)
Query: 546 RAAMGNKNSSRRQGPRRKFRKSDPLKSFSAEPTKRAGKGRMKRE-----GRNGDDTGKHK 600
R+ + N+ +Q R++ K L+S + + GK R++ GR GK +
Sbjct: 802 RSELKNRQQILKQ--RKRKAKQQFLQSGGMKKLRNKGKQRLREVMKSGFGRGAVKKGKMR 859
Query: 601 KK 602
KK
Sbjct: 860 KK 861
Score = 39 (18.8 bits), Expect = 2.4e-29, Sum P(3) = 2.4e-29
Identities = 12/55 (21%), Positives = 20/55 (36%)
Query: 550 GNKNSSRRQGPRRKFRKSDPLKSFSAEPTKRAGKGRMKREGRNGDDTGKHKKKKS 604
G R RR + A P + G ++ E +N K +K+K+
Sbjct: 765 GGAQRGRGSAGRRGRGRGRSAAGSQATPAQHQGGSGVRSELKNRQQILKQRKRKA 819
>WB|WBGene00022378 [details] [associations]
symbol:Y94H6A.5 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0016818 "hydrolase activity, acting on
acid anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0016021 "integral to membrane" evidence=IEA] [GO:0040010
"positive regulation of growth rate" evidence=IMP]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012541 Pfam:PF00270 Pfam:PF00271 Pfam:PF08147
ProDom:PD024971 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0040010 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 KO:K14808 HOGENOM:HOG000246455
OMA:FYIPYRP GeneTree:ENSGT00550000075100 EMBL:FO081810
GeneID:177054 KEGG:cel:CELE_Y94H6A.5 UCSC:Y94H6A.5a CTD:177054
NextBio:895136 RefSeq:NP_741347.2 ProteinModelPortal:Q688Z4
SMR:Q688Z4 STRING:Q688Z4 PRIDE:Q688Z4 EnsemblMetazoa:Y94H6A.5b
WormBase:Y94H6A.5b InParanoid:Q688Z4 ArrayExpress:Q688Z4
Uniprot:Q688Z4
Length = 871
Score = 283 (104.7 bits), Expect = 1.2e-29, Sum P(2) = 1.2e-29
Identities = 91/311 (29%), Positives = 148/311 (47%)
Query: 31 LGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFN 90
+GLD + A+ KKG +PT IQ+ +IP I++GKDVVA ++TGSGKT A+++P+L +L
Sbjct: 29 IGLDHSVYKAIEKKGFNQPTPIQRKTIPCIMDGKDVVAMSRTGSGKTAAFVIPMLQKLKR 88
Query: 91 ESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAAL 150
+ + AL++ PTREL Q + V L G L+ L + + +
Sbjct: 89 RDTTGIR----ALMVSPTRELALQTFKVVKELGRFT-G---LRCACLVGGDQIEEQFSTI 140
Query: 151 AGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIP 210
PDI++ATPG + L V S ++ +V DEAD L G++D L IP
Sbjct: 141 HENPDILLATPG---RLLHVIVEMDLRLS-YVQYVVFDEADRLFEMGFQDQLTETLKRIP 196
Query: 211 RGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKX 270
Q LL SAT + K L +P ++ L DV ++V K F + +
Sbjct: 197 ESRQTLLFSATLPKMLVDFAKAGLTDPMLVRL----DVDEKVSDKLSMVFCMCRPDEKLF 252
Query: 271 XXXXXXXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFN 330
K+ ++F T+ + L + GI + + ++L +R +++F+
Sbjct: 253 ALLHLCRRMDRENKQTVVFCATMKHVEYVVGILHRAGIDCSFVYSQLDATARKMNIQKFH 312
Query: 331 AGLFDYLIATD 341
+ L+ TD
Sbjct: 313 EKQNNILVVTD 323
Score = 125 (49.1 bits), Expect = 1.2e-29, Sum P(2) = 1.2e-29
Identities = 24/63 (38%), Positives = 37/63 (58%)
Query: 378 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGD 437
RG+D + TVIN P A +VHR+GR RA +G ++SL++ DE+ ++ F+G
Sbjct: 327 RGVDIPLLDTVINLHFPPKAKLFVHRVGRVARAGRSGTAISLIANDELPYLTDLFMFLGK 386
Query: 438 DEN 440
N
Sbjct: 387 PIN 389
>ASPGD|ASPL0000054300 [details] [associations]
symbol:AN0583 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012541
Pfam:PF00270 Pfam:PF00271 Pfam:PF08147 ProDom:PD024971
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005730 EMBL:BN001308 EMBL:AACD01000007 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K14808 RefSeq:XP_658187.1 ProteinModelPortal:Q5BFU7
STRING:Q5BFU7 EnsemblFungi:CADANIAT00002094 GeneID:2876361
KEGG:ani:AN0583.2 HOGENOM:HOG000246455 OMA:HLKVEMN
OrthoDB:EOG4JWZP1 Uniprot:Q5BFU7
Length = 936
Score = 296 (109.3 bits), Expect = 1.3e-29, Sum P(3) = 1.3e-29
Identities = 84/239 (35%), Positives = 127/239 (53%)
Query: 31 LGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFN 90
+GL+ L+ A+ +KG PT IQ+ +IP+I+E +DVV A+TGSGKT A+++P++ +L +
Sbjct: 96 MGLNANLLKAIARKGFSVPTPIQRKTIPVIMEDQDVVGMARTGSGKTAAFVIPMIEKLKS 155
Query: 91 ESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAAL 150
S+ K L+L P+REL Q V EL KG LK V L + +
Sbjct: 156 HST---KFGARGLILSPSRELALQTLKVVK---ELGKG-TDLKSVLLVGGDSLEEQFGMM 208
Query: 151 AGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIP 210
AG PDIVIATPG + L V + S S+K +V DEAD L G+ L + +P
Sbjct: 209 AGNPDIVIATPG---RFLHLKVEMNLDLS-SIKYVVFDEADRLFEMGFAAQLTEILHGLP 264
Query: 211 RGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDK 269
Q LL SAT + + + L +P ++ L D + ++ P ++Q + S +K
Sbjct: 265 STRQTLLFSATLPKSLVEFARAGLQDPTLVRL----DTESKISP-DLQNAFFSVKSAEK 318
Score = 106 (42.4 bits), Expect = 1.3e-29, Sum P(3) = 1.3e-29
Identities = 23/59 (38%), Positives = 33/59 (55%)
Query: 378 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVG 436
RGID + VIN++ P +VHR+GRT RA G S SLV + +++ F+G
Sbjct: 435 RGIDIPILANVINYDFPSQPKIFVHRVGRTARAGRKGWSYSLVRDADAPYLLDLQLFLG 493
Score = 47 (21.6 bits), Expect = 1.3e-29, Sum P(3) = 1.3e-29
Identities = 13/55 (23%), Positives = 24/55 (43%)
Query: 287 LIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATD 341
++F T L L + G + + L Q +R ++ F G+ + L+ TD
Sbjct: 377 IVFAATKHHVDYLYSLLREAGFAVSYVYGSLDQTARKIQVQNFRTGISNILVVTD 431
>TAIR|locus:2050715 [details] [associations]
symbol:AT2G45810 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0005829
"cytosol" evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005829 GO:GO:0005524
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0006417 GO:GO:0006397
GO:GO:0003723 GO:GO:0000932 GO:GO:0051028 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:AC004665 GO:GO:0008026
eggNOG:COG0513 HOGENOM:HOG000268797 KO:K12614 InterPro:IPR014014
PROSITE:PS51195 OMA:HIDPARF ProtClustDB:CLSN2683443 EMBL:AY039862
EMBL:BT002709 EMBL:AJ010459 IPI:IPI00528597 PIR:T02466 PIR:T51740
RefSeq:NP_182105.1 UniGene:At.46 ProteinModelPortal:Q94BV4
SMR:Q94BV4 IntAct:Q94BV4 STRING:Q94BV4 PaxDb:Q94BV4 PRIDE:Q94BV4
EnsemblPlants:AT2G45810.1 GeneID:819189 KEGG:ath:AT2G45810
GeneFarm:917 TAIR:At2g45810 InParanoid:Q94BV4 PhylomeDB:Q94BV4
Genevestigator:Q94BV4 GermOnline:AT2G45810 Uniprot:Q94BV4
Length = 528
Score = 271 (100.5 bits), Expect = 1.3e-29, Sum P(2) = 1.3e-29
Identities = 73/206 (35%), Positives = 112/206 (54%)
Query: 37 LVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKS 96
L+ + +KG +KP+ IQ+ SIP+ L G D++ARAK G+GKT A+ +P L ++ P++
Sbjct: 165 LLRGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGKTGAFCIPTLEKI----DPEN 220
Query: 97 KLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDI 156
+ A ++LVPTREL Q S+V EL K ++++V+ T D L P +
Sbjct: 221 NVIQA-VILVPTRELALQT-SQVCK--ELSK-YLKIEVMVTTGGTSLRDDIMRLYQPVHL 275
Query: 157 VIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCL 216
++ TPG + GV K + +LV+DEAD LLS ++ ++ L +P Q L
Sbjct: 276 LVGTPGRILDLAKKGVCVLKDCA----MLVMDEADKLLSVEFQPSIEELIQFLPESRQIL 331
Query: 217 LMSATSSSDVDKLKKLILHNPYILTL 242
+ SAT V K L PYI+ L
Sbjct: 332 MFSATFPVTVKSFKDRYLKKPYIINL 357
Score = 204 (76.9 bits), Expect = 7.2e-22, Sum P(2) = 7.2e-22
Identities = 67/240 (27%), Positives = 110/240 (45%)
Query: 102 ALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATP 161
A++LVPTREL Q S+V EL K ++++V+ T D L P +++ TP
Sbjct: 225 AVILVPTRELALQT-SQVCK--ELSK-YLKIEVMVTTGGTSLRDDIMRLYQPVHLLVGTP 280
Query: 162 GCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSAT 221
G + GV K + +LV+DEAD LLS ++ ++ L +P Q L+ SAT
Sbjct: 281 GRILDLAKKGVCVLKDCA----MLVMDEADKLLSVEFQPSIEELIQFLPESRQILMFSAT 336
Query: 222 SSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKXXXXXXXXXXXX 281
V K L PYI+ L D++ V Q++ ER K
Sbjct: 337 FPVTVKSFKDRYLKKPYIINL------MDQLTLMGVTQYYAFVEERQKVHCLNTLFSKLQ 390
Query: 282 VQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATD 341
+ + ++IF N+++ L + + G ++A++ Q+ R + +F G L+ TD
Sbjct: 391 INQ-SIIFCNSVNRVELLAKKITELGYSCFYIHAKMVQDHRNRVFHDFRNGACRNLVCTD 449
Score = 128 (50.1 bits), Expect = 1.3e-29, Sum P(2) = 1.3e-29
Identities = 30/81 (37%), Positives = 46/81 (56%)
Query: 378 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVS-PDEMKIFEEIKSFVG 436
RGID + V+ VINF+ P+ + Y+HR+GR+GR + G +V+LV+ D K+++
Sbjct: 453 RGIDIQAVNVVINFDFPRTSESYLHRVGRSGRFGHLGLAVNLVTYEDRFKMYQT------ 506
Query: 437 DDENEDSNIIAPFPLLAQNAV 457
E E I P P L A+
Sbjct: 507 --EQELGTEIKPIPSLIDKAI 525
>UNIPROTKB|F1NTK9 [details] [associations]
symbol:DDX54 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003714 "transcription corepressor
activity" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0006396 "RNA processing" evidence=IEA] [GO:0030331 "estrogen
receptor binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012541
Pfam:PF00270 Pfam:PF00271 Pfam:PF08147 ProDom:PD024971
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003714 GO:GO:0005730 GO:GO:0003723 GO:GO:0006396
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00550000075100
EMBL:AADN02043183 IPI:IPI00582285 ProteinModelPortal:F1NTK9
Ensembl:ENSGALT00000012108 Uniprot:F1NTK9
Length = 822
Score = 281 (104.0 bits), Expect = 1.3e-29, Sum P(3) = 1.3e-29
Identities = 97/311 (31%), Positives = 143/311 (45%)
Query: 31 LGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFN 90
+GL + + KKG + PT IQ+ +IP+IL G+DVVA A+TGSGKT +LLP+ RL
Sbjct: 41 MGLSYPVFKGVMKKGYKVPTPIQRKTIPVILRGRDVVAMARTGSGKTACFLLPMFERL-K 99
Query: 91 ESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAAL 150
SP AL+L PTREL Q EL K LK + D AAL
Sbjct: 100 APSPSGA---RALILSPTRELALQTLKFTK---ELGKF-TGLKTALVLGGDKMEDQFAAL 152
Query: 151 AGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIP 210
PDI+IATPG + + V + S++ +V DEAD L G+ + L+ + A +P
Sbjct: 153 HENPDIIIATPG---RLVHVAVEMNLKLQ-SVEYVVFDEADRLFEMGFAEQLQEILARLP 208
Query: 211 RGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKX 270
Q +L SAT + + + L P ++ L DV+ ++ + F+ +
Sbjct: 209 GSHQTVLFSATLPKLLVEFARAGLTEPMLIRL----DVESKLSEQLKLAFFHVRGDDKPA 264
Query: 271 XXXXXXXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFN 330
Q + ++F T LK L GI + + L Q +R + +F
Sbjct: 265 VLLHLLRCVVKPQDQTVVFVATKHHTEYLKELLTSQGICCTHIYSSLDQTARKINIAKFA 324
Query: 331 AGLFDYLIATD 341
G L+ TD
Sbjct: 325 HGKCQVLLVTD 335
Score = 124 (48.7 bits), Expect = 1.3e-29, Sum P(3) = 1.3e-29
Identities = 23/59 (38%), Positives = 36/59 (61%)
Query: 378 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVG 436
RG+D + VIN+ P + ++HR+GR RA +G + SLV+PDEM ++ F+G
Sbjct: 339 RGLDIPMLDNVINYSFPAKSKLFLHRVGRVARAGRSGTAYSLVAPDEMPYIFDLHLFLG 397
Score = 43 (20.2 bits), Expect = 1.3e-29, Sum P(3) = 1.3e-29
Identities = 15/63 (23%), Positives = 27/63 (42%)
Query: 546 RAAMGNKNS---SRRQGPRRKFRKSDPLKSFSAEPTKRAGKGRMKREGRNGDDTGKHKKK 602
R+ + NK R+ +++F + LK A +R + + GR T K K +
Sbjct: 760 RSELKNKQQILKQRKAAAKQRFLQRGGLKRLKARNRQRVQELQQMAFGRRVGATKKGKLR 819
Query: 603 KSL 605
K +
Sbjct: 820 KKM 822
>DICTYBASE|DDB_G0293168 [details] [associations]
symbol:ddx17 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0008186 "RNA-dependent ATPase
activity" evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
[GO:0005634 "nucleus" evidence=IEA;ISS] [GO:0003724 "RNA helicase
activity" evidence=ISS] [GO:0003723 "RNA binding" evidence=IEA;ISS]
[GO:0042254 "ribosome biogenesis" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0006364 "rRNA processing"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0044351 "macropinocytosis" evidence=RCA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
dictyBase:DDB_G0293168 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
GenomeReviews:CM000155_GR GO:GO:0000184 GO:GO:0003723 GO:GO:0006396
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0008026 eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014
PROSITE:PS51195 EMBL:AAFI02000199 KO:K12823 GO:GO:0008186
RefSeq:XP_629279.1 HSSP:P09052 ProteinModelPortal:Q54CE0
PRIDE:Q54CE0 EnsemblProtists:DDB0233431 GeneID:8629001
KEGG:ddi:DDB_G0293168 Uniprot:Q54CE0
Length = 785
Score = 281 (104.0 bits), Expect = 1.3e-29, Sum P(2) = 1.3e-29
Identities = 91/298 (30%), Positives = 136/298 (45%)
Query: 45 GIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALV 104
G PT IQ + P+ L+G+D++ AKTGSGKT A+LLP + + + + P LV
Sbjct: 403 GFPNPTPIQSQAWPIALKGRDIIGLAKTGSGKTLAFLLPSIVHINAQPVLREDDGPIVLV 462
Query: 105 LVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCM 164
L PTREL Q+ E G Q+ + AAL +IVIATPG +
Sbjct: 463 LAPTRELALQIQEETNKF----GGTSQISNTCVYGGASKHTQVAALKKGVEIVIATPGRL 518
Query: 165 PKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSS 224
L +G K+ + LVLDEAD +L G+E ++ + + I Q L+ SAT
Sbjct: 519 IDILESG----KTNLRRVTYLVLDEADRMLDMGFEPQIRKIISQIRPDRQTLMFSATWPK 574
Query: 225 DVDKLKKLILHNPYILTLPEVGDVKDEVIPK-NVQQFWISCSERDKXXXXXXXXXXXXVQ 283
+V L L + +I +G E+ NV+Q C + +K
Sbjct: 575 EVQALAHDFLTD-HIQV--HIGST--EITANHNVRQIVEVCQDFEKKERMLSFLGSVGRD 629
Query: 284 KKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATD 341
+K ++F T L+ L+ G KS ++ Q R +L +F G+ +IATD
Sbjct: 630 EKVIVFAETRKGVDDLQRVLQFSGFKSIGIHGNKSQPERDFVLSQFKNGMVPIMIATD 687
Score = 125 (49.1 bits), Expect = 1.3e-29, Sum P(2) = 1.3e-29
Identities = 22/54 (40%), Positives = 35/54 (64%)
Query: 378 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEI 431
RG+D K++ V+N++ P Y+HRIGRT RA +G S SL++ D ++ E+
Sbjct: 691 RGLDIKDIKYVVNYDFPNTIEVYIHRIGRTARAGASGVSYSLLTTDNARLANEL 744
>GENEDB_PFALCIPARUM|PFF1500c [details] [associations]
symbol:PFF1500c "DEAD/DEAH box ATP-dependent RNA
helicase, putative" species:5833 "Plasmodium falciparum"
[GO:0016070 "RNA metabolic process" evidence=ISS] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003723 GO:GO:0016070
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
EMBL:AL844505 InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313
Pfam:PF13959 HOGENOM:HOG000268799 KO:K13179 OMA:KDGYRSY
RefSeq:XP_966291.1 ProteinModelPortal:C6KTE4
EnsemblProtists:PFF1500c:mRNA GeneID:3885813 KEGG:pfa:PFF1500c
EuPathDB:PlasmoDB:PF3D7_0630900 ProtClustDB:CLSZ2514457
Uniprot:C6KTE4
Length = 601
Score = 295 (108.9 bits), Expect = 1.5e-29, Sum P(2) = 1.5e-29
Identities = 100/316 (31%), Positives = 160/316 (50%)
Query: 34 DLRLVHALNKKGIQK---PTL--IQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRL 88
+L + AL KKG+++ TL IQ IP L GKD++ AKTGSGKT A+L+P ++ L
Sbjct: 152 ELNICDAL-KKGLKELNFVTLTEIQAKCIPHFLSGKDILGAAKTGSGKTLAFLVPSINIL 210
Query: 89 FN-ESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLR 147
+N + PK+ L++ PTRELC Q+Y +V +LCK Q + + M ++ +
Sbjct: 211 YNIKFLPKN--GTGVLIISPTRELCLQIY-QVCK--DLCKYIPQTNGI-IIGGMSRNEEK 264
Query: 148 AALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLKALS 206
+I+IATPG L + +K F +L L++DEAD LL G+E+++ +
Sbjct: 265 KKFIHGINILIATPGR----LLDHMQNTKEFIYKNLICLIIDEADRLLQIGFEEEINLII 320
Query: 207 AVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSE 266
+P+ Q L SAT ++ V+ L +L L P + EV K + + +QQ + E
Sbjct: 321 KRLPKKRQTALFSATQTTKVESLIRLSLQKPIFI---EV-TTKIATVER-LQQGYALVDE 375
Query: 267 RDKXXXXXXXXXXXXVQKKALIF-TNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHI 325
DK + KK ++F N + + F L L I + ++ + QN RL
Sbjct: 376 -DKRFLLLFTFLKKNMSKKIMVFFNNCMSVQFYNDL-LNYIDIPTYCIHGKKKQNKRLKS 433
Query: 326 LEEFNAGLFDYLIATD 341
+F+A L+ T+
Sbjct: 434 FHDFSAAKCAILLCTN 449
Score = 104 (41.7 bits), Expect = 1.5e-29, Sum P(2) = 1.5e-29
Identities = 18/58 (31%), Positives = 36/58 (62%)
Query: 378 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNT-GASVSLVSPDEMKIFEEIKSF 434
RG+D NV+ +I ++ P ++ Y+HR+GRT R ++ G+++ + E+K +K +
Sbjct: 453 RGLDIPNVNYIIQYDPPDDSKEYIHRVGRTCRGQDSNGSAIIFLMKHELKFLNYLKFY 510
>UNIPROTKB|C6KTE4 [details] [associations]
symbol:PFF1500c "DEAD/DEAH box ATP-dependent RNA helicase,
putative" species:36329 "Plasmodium falciparum 3D7" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003723 GO:GO:0016070 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 EMBL:AL844505 InterPro:IPR014014
PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
HOGENOM:HOG000268799 KO:K13179 OMA:KDGYRSY RefSeq:XP_966291.1
ProteinModelPortal:C6KTE4 EnsemblProtists:PFF1500c:mRNA
GeneID:3885813 KEGG:pfa:PFF1500c EuPathDB:PlasmoDB:PF3D7_0630900
ProtClustDB:CLSZ2514457 Uniprot:C6KTE4
Length = 601
Score = 295 (108.9 bits), Expect = 1.5e-29, Sum P(2) = 1.5e-29
Identities = 100/316 (31%), Positives = 160/316 (50%)
Query: 34 DLRLVHALNKKGIQK---PTL--IQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRL 88
+L + AL KKG+++ TL IQ IP L GKD++ AKTGSGKT A+L+P ++ L
Sbjct: 152 ELNICDAL-KKGLKELNFVTLTEIQAKCIPHFLSGKDILGAAKTGSGKTLAFLVPSINIL 210
Query: 89 FN-ESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLR 147
+N + PK+ L++ PTRELC Q+Y +V +LCK Q + + M ++ +
Sbjct: 211 YNIKFLPKN--GTGVLIISPTRELCLQIY-QVCK--DLCKYIPQTNGI-IIGGMSRNEEK 264
Query: 148 AALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLKALS 206
+I+IATPG L + +K F +L L++DEAD LL G+E+++ +
Sbjct: 265 KKFIHGINILIATPGR----LLDHMQNTKEFIYKNLICLIIDEADRLLQIGFEEEINLII 320
Query: 207 AVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSE 266
+P+ Q L SAT ++ V+ L +L L P + EV K + + +QQ + E
Sbjct: 321 KRLPKKRQTALFSATQTTKVESLIRLSLQKPIFI---EV-TTKIATVER-LQQGYALVDE 375
Query: 267 RDKXXXXXXXXXXXXVQKKALIF-TNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHI 325
DK + KK ++F N + + F L L I + ++ + QN RL
Sbjct: 376 -DKRFLLLFTFLKKNMSKKIMVFFNNCMSVQFYNDL-LNYIDIPTYCIHGKKKQNKRLKS 433
Query: 326 LEEFNAGLFDYLIATD 341
+F+A L+ T+
Sbjct: 434 FHDFSAAKCAILLCTN 449
Score = 104 (41.7 bits), Expect = 1.5e-29, Sum P(2) = 1.5e-29
Identities = 18/58 (31%), Positives = 36/58 (62%)
Query: 378 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNT-GASVSLVSPDEMKIFEEIKSF 434
RG+D NV+ +I ++ P ++ Y+HR+GRT R ++ G+++ + E+K +K +
Sbjct: 453 RGLDIPNVNYIIQYDPPDDSKEYIHRVGRTCRGQDSNGSAIIFLMKHELKFLNYLKFY 510
>UNIPROTKB|I3L976 [details] [associations]
symbol:DDX47 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0008380 "RNA splicing" evidence=IEA] [GO:0006915
"apoptotic process" evidence=IEA] [GO:0006364 "rRNA processing"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0006915
GO:GO:0005730 GO:GO:0008380 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00670000098028
OMA:IFIPSKF Ensembl:ENSSSCT00000025539 Uniprot:I3L976
Length = 456
Score = 289 (106.8 bits), Expect = 1.5e-29, Sum P(2) = 1.5e-29
Identities = 79/208 (37%), Positives = 116/208 (55%)
Query: 31 LGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFN 90
LG+ L A ++ G KPT IQ +IPL L+G+D++ A+TGSGKT A+ LP+L+ L
Sbjct: 28 LGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLE 87
Query: 91 ESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAAL 150
+P+ A LVL PTREL Q+ + AL + ++ + + + AL
Sbjct: 88 --TPQRLFA---LVLTPTRELAFQISEQFEAL----GSSIGVQCAVIVGGIDSMSQSLAL 138
Query: 151 AGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLKALSAVI 209
A P IVIATPG + L +K F+ +LK LV+DEAD +L+ +E ++ + VI
Sbjct: 139 AKKPHIVIATPGRLIDHLEN----TKGFNLRALKYLVMDEADRILNMDFETEVDKILKVI 194
Query: 210 PRGCQCLLMSATSSSDVDKLKKLILHNP 237
PR + L SAT + V KL++ L NP
Sbjct: 195 PRDRKTFLFSATMTKKVQKLQRAALKNP 222
Score = 227 (85.0 bits), Expect = 5.3e-22, Sum P(2) = 5.3e-22
Identities = 73/241 (30%), Positives = 114/241 (47%)
Query: 102 ALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATP 161
ALVL PTREL Q+ + AL + ++ + + + ALA P IVIATP
Sbjct: 94 ALVLTPTRELAFQISEQFEAL----GSSIGVQCAVIVGGIDSMSQSLALAKKPHIVIATP 149
Query: 162 GCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSA 220
G + L +K F+ +LK LV+DEAD +L+ +E ++ + VIPR + L SA
Sbjct: 150 GRLIDHLEN----TKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKTFLFSA 205
Query: 221 TSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKXXXXXXXXXXX 280
T + V KL++ L NP + K + + K +QQ+++ + K
Sbjct: 206 TMTKKVQKLQRAALKNPVKCAVSS----KYQTVEK-LQQYYLFIPSKFKDTYLVYILNEL 260
Query: 281 XVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIAT 340
+IF +T + R L L G + L+ ++ Q+ RL L +F A L+AT
Sbjct: 261 A-GNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSILLAT 319
Query: 341 D 341
D
Sbjct: 320 D 320
Score = 101 (40.6 bits), Expect = 1.5e-29, Sum P(2) = 1.5e-29
Identities = 16/33 (48%), Positives = 25/33 (75%)
Query: 378 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRA 410
RG+D +V V+NF++P ++ Y+HR+GRT RA
Sbjct: 324 RGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARA 356
>UNIPROTKB|B7Z5N6 [details] [associations]
symbol:DDX59 "cDNA FLJ56549, highly similar to Homo sapiens
DEAD (Asp-Glu-Ala-Asp) box polypeptide 59 (DDX59), transcript
variant 2, mRNA" species:9606 "Homo sapiens" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR007529
Pfam:PF04438 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
EMBL:AL445483 UniGene:Hs.497332 HGNC:HGNC:25360
HOGENOM:HOG000006599 HOVERGEN:HBG106120 OrthoDB:EOG4K9BBZ
EMBL:AK299219 IPI:IPI00514037 SMR:B7Z5N6 Ensembl:ENST00000367348
UCSC:uc010ppl.1 Uniprot:B7Z5N6
Length = 567
Score = 320 (117.7 bits), Expect = 1.7e-29, Sum P(2) = 1.7e-29
Identities = 99/310 (31%), Positives = 156/310 (50%)
Query: 37 LVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKS 96
L H L K G + PT IQ IP+ L G+D++A A TGSGKT A+LLP++ R ES
Sbjct: 214 LNHNLKKSGYEVPTPIQMQMIPVGLLGRDILASADTGSGKTAAFLLPVIMRALFESK--- 270
Query: 97 KLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDI 156
P+AL+L PTREL Q+ + EL G ++K V L +P L +
Sbjct: 271 --TPSALILTPTRELAIQIERQAK---ELMSGLPRMKTVLLVGGLPLPPQLYRLQQHVKV 325
Query: 157 VIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCL 216
+IATPG + L + QS +KI+V+DEAD +L G++ + + IP CQ +
Sbjct: 326 IIATPG---RLLDI-IKQSSVELCGVKIVVVDEADTMLKMGFQQQVLDILENIPNDCQTI 381
Query: 217 LMSATSSSDVDKLKKLILHNPY-ILT----LPEVGDVKDEVIPKNVQQFWISCSERDKXX 271
L+SAT + +++L +LHNP I+T LP +V+ ++ W+ + K
Sbjct: 382 LVSATIPTSIEQLASQLLHNPVRIITGEKNLP-CANVRQIIL-------WVEDPAKKKKL 433
Query: 272 XXXXXXXXXXVQKKALIFTNTIDMAFRLKLFLEKF-GIKSAILNAELPQNSRLHILEEFN 330
+ L+F + A L ++K G+KS +++E Q R +IL+
Sbjct: 434 FEILNDKKLF-KPPVLVFVDCKLGADLLSEAVQKITGLKSISIHSEKSQIERKNILKGLL 492
Query: 331 AGLFDYLIAT 340
G ++ +++T
Sbjct: 493 EGDYEVVVST 502
Score = 73 (30.8 bits), Expect = 1.7e-29, Sum P(2) = 1.7e-29
Identities = 14/31 (45%), Positives = 22/31 (70%)
Query: 375 GVV-RGIDFKNVHTVINFEMPQNAAGYVHRI 404
GV+ RG+D +V V+NF+MP + YVH++
Sbjct: 503 GVLGRGLDLISVRLVVNFDMPSSMDEYVHQL 533
>RGD|1304909 [details] [associations]
symbol:Ddx42 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 42"
species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0005737 "cytoplasm"
evidence=IEA;ISO] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008104 "protein localization" evidence=IEA;ISO]
[GO:0005730 "nucleolus" evidence=ISO] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 RGD:1304909
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0008104
GO:GO:0003676 EMBL:CH473948 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
CTD:11325 KO:K12835 OrthoDB:EOG47WNN9 GeneTree:ENSGT00610000086076
IPI:IPI00361283 RefSeq:NP_001100529.1 UniGene:Rn.154550
Ensembl:ENSRNOT00000013046 GeneID:303607 KEGG:rno:303607
UCSC:RGD:1304909 NextBio:651732 Uniprot:D4A031
Length = 929
Score = 292 (107.8 bits), Expect = 1.8e-29, Sum P(3) = 1.8e-29
Identities = 88/313 (28%), Positives = 150/313 (47%)
Query: 32 GLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNE 91
G D +L+H + K +PT IQ +P+ L G+D++ AKTGSGKT A++ P+L + ++
Sbjct: 259 GFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLIHIMDQ 318
Query: 92 SSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCK--GQV-QLKVVQLTSSMPASDLRA 148
+ P A+++ PTRELCQQ+++E CK G+ L+ V + +
Sbjct: 319 KELEPGDGPIAVIVCPTRELCQQIHAE-------CKRFGKAYNLRSVAVYGGGSMWEQAK 371
Query: 149 ALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAV 208
AL +IV+ TPG L V + + + LV DEAD + G+E ++++++
Sbjct: 372 ALQEGAEIVVCTPGR----LIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQVRSIASH 427
Query: 209 IPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERD 268
+ Q LL SAT ++KL + IL +P + ++G+ ++V Q I S
Sbjct: 428 VRPDRQTLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDV----TQIVEILHSGPS 483
Query: 269 KXXXXXXXXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEE 328
K L+F A L L++ G +L+ ++ Q+ R ++ +
Sbjct: 484 KWNWLTRRLVEFTSSGSVLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVILD 543
Query: 329 FNAGLFDYLIATD 341
F L+ATD
Sbjct: 544 FKKKDIPVLVATD 556
Score = 118 (46.6 bits), Expect = 1.8e-29, Sum P(3) = 1.8e-29
Identities = 31/111 (27%), Positives = 58/111 (52%)
Query: 347 EKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGR 406
+ DQS+ + K K P L + RG+D ++ TVIN+++ ++ + HRIGR
Sbjct: 531 DMDQSERNKVILDFKKKDIPV--LVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGR 588
Query: 407 TGRAYNTGASVSLVSPDEMKIFEE-IKSFVGDDENEDSNIIAPFPLLAQNA 456
TGRA G + +L++P + + +++ G +++ ++ L QNA
Sbjct: 589 TGRAGEKGVAYTLLTPKDSNFAGDLVRNLEGANQHVSKELL---DLAMQNA 636
Score = 38 (18.4 bits), Expect = 1.8e-29, Sum P(3) = 1.8e-29
Identities = 7/15 (46%), Positives = 10/15 (66%)
Query: 580 RAGKGRMKREGRNGD 594
R G+ R +GRNG+
Sbjct: 865 RHGESRGANDGRNGE 879
>TIGR_CMR|SO_4034 [details] [associations]
symbol:SO_4034 "ATP-dependent RNA helicase DeaD"
species:211586 "Shewanella oneidensis MR-1" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0009631 "cold
acclimation" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
EMBL:AE014299 GenomeReviews:AE014299_GR InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268810 KO:K05592 InterPro:IPR005580
Pfam:PF03880 HSSP:P10081 OMA:LPQGMPK RefSeq:NP_719564.1
ProteinModelPortal:Q8EA75 GeneID:1171660 KEGG:son:SO_4034
PATRIC:23527732 ProtClustDB:CLSK907463 Uniprot:Q8EA75
Length = 623
Score = 271 (100.5 bits), Expect = 2.1e-29, Sum P(2) = 2.1e-29
Identities = 75/228 (32%), Positives = 120/228 (52%)
Query: 31 LGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFN 90
LGL L+ AL++ G +KPT IQ ASI ++ GKD++ +A+TG+GKT A+ LPLL+++ +
Sbjct: 11 LGLSENLLRALDELGYEKPTPIQSASIDPLMAGKDILGQAQTGTGKTGAFALPLLNKVTS 70
Query: 91 ESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAAL 150
+++P+ LVL PTREL QV +E A K V+ + AL
Sbjct: 71 QTTPQ------ILVLAPTRELAVQV-AE--AFSSYAKFMKNFHVLPIYGGQSMQQQLNAL 121
Query: 151 AGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIP 210
P +++ TPG + + G L+ ++L+ LVLDEAD +L G+ DD++ + P
Sbjct: 122 KRGPQVIVGTPGRVMDHMRRGTLKL----ETLQALVLDEADEMLKMGFIDDIEWILEHTP 177
Query: 211 RGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQ 258
Q L SAT + ++ L N +++ D + + VQ
Sbjct: 178 PQRQLALFSATMPEQIKRVANKHLKNATNISIAASHTTVDSIEQRFVQ 225
Score = 195 (73.7 bits), Expect = 8.4e-21, Sum P(2) = 8.4e-21
Identities = 66/246 (26%), Positives = 109/246 (44%)
Query: 96 SKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAALAGPPD 155
S+ P LVL PTREL QV +E A K V+ + AL P
Sbjct: 70 SQTTPQILVLAPTRELAVQV-AE--AFSSYAKFMKNFHVLPIYGGQSMQQQLNALKRGPQ 126
Query: 156 IVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQC 215
+++ TPG + + G L+ ++L+ LVLDEAD +L G+ DD++ + P Q
Sbjct: 127 VIVGTPGRVMDHMRRGTLKL----ETLQALVLDEADEMLKMGFIDDIEWILEHTPPQRQL 182
Query: 216 LLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKXXXXXX 275
L SAT +++K++ N ++ + +++Q ++ S+ +K
Sbjct: 183 ALFSATMP---EQIKRVA--NKHLKNATNISIAASHTTVDSIEQRFVQVSQHNKLEALVR 237
Query: 276 XXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFD 335
+ +IF T + L LE G S+ L+ ++ Q +R +E+ G D
Sbjct: 238 VLEVENTEG-IIIFVRTRNSCVELAEKLEARGYASSPLHGDMNQQARERAVEQLKNGKLD 296
Query: 336 YLIATD 341
LIATD
Sbjct: 297 ILIATD 302
Score = 130 (50.8 bits), Expect = 2.1e-29, Sum P(2) = 2.1e-29
Identities = 23/55 (41%), Positives = 37/55 (67%)
Query: 378 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIK 432
RG+D + + V+N+++P + YVHRIGRTGRA TG ++ V+ EM++ I+
Sbjct: 306 RGLDVERIGHVVNYDIPYDTEAYVHRIGRTGRAGRTGMAILFVTSREMRMLRTIE 360
>ASPGD|ASPL0000006660 [details] [associations]
symbol:AN5931 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0000184 GO:GO:0003723 EMBL:BN001301
EMBL:AACD01000101 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268804 KO:K12823 RefSeq:XP_663535.1
ProteinModelPortal:Q5B0J9 STRING:Q5B0J9 PRIDE:Q5B0J9
EnsemblFungi:CADANIAT00007099 GeneID:2870997 KEGG:ani:AN5931.2
OMA:IDAMSGY OrthoDB:EOG47SWP6 Uniprot:Q5B0J9
Length = 563
Score = 270 (100.1 bits), Expect = 2.6e-29, Sum P(2) = 2.6e-29
Identities = 88/312 (28%), Positives = 142/312 (45%)
Query: 32 GLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNE 91
G ++ + +G +KPT IQ P+ L G+DVV A+TGSGKT +Y LP + + +
Sbjct: 146 GFPQYVLSEVKAQGFEKPTAIQSQGWPMALSGRDVVGIAETGSGKTLSYCLPAIVHINAQ 205
Query: 92 SSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAALA 151
P L+L PTREL Q+ +E+ + K +++ + +P L+
Sbjct: 206 PLLAPGDGPIVLILAPTRELAVQIQAEIS---KFGKSS-RIRNTCVYGGVPKGPQIRDLS 261
Query: 152 GPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPR 211
++ IATPG + L G + + LVLDEAD +L G+E ++ + + I
Sbjct: 262 RGVEVCIATPGRLIDMLEAGRTNLRRVT----YLVLDEADRMLDMGFEPQIRKIISQIRP 317
Query: 212 GCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKXX 271
Q + SAT +V +L L+N YI +G + D + Q SE +K
Sbjct: 318 DRQTCMWSATWPKEVRQLASDFLNN-YIQV--NIGSM-DLSANHRITQIVEVISEFEKRD 373
Query: 272 XXXXXXXXXXVQK--KALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEF 329
+ K L+FT T +A + FL + G + ++ + Q R +L EF
Sbjct: 374 RMIKHLEKIMENRGNKCLVFTGTKRIADEITRFLRQDGWPALSIHGDKQQQERDWVLNEF 433
Query: 330 NAGLFDYLIATD 341
G ++ATD
Sbjct: 434 KTGKSPIMVATD 445
Score = 128 (50.1 bits), Expect = 2.6e-29, Sum P(2) = 2.6e-29
Identities = 28/95 (29%), Positives = 53/95 (55%)
Query: 347 EKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGR 406
+K Q + ++ K+ K P + ++ RGID +++ VIN++ P N+ YVHRIGR
Sbjct: 420 DKQQQERDWVLNEFKTGKSP-IMVATDVAS-RGIDVRDITHVINYDYPNNSEDYVHRIGR 477
Query: 407 TGRAYNTGASVSLVSPDEMKIFEEIKSFVGDDENE 441
TGRA G +++ + D K ++ + + + + +
Sbjct: 478 TGRAGAKGTAITFFTTDNAKQARDLVTILSEAKQQ 512
>ASPGD|ASPL0000042587 [details] [associations]
symbol:AN1750 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005730
"nucleolus" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005730 EMBL:AACD01000027 EMBL:BN001307 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K14805 HOGENOM:HOG000290702 RefSeq:XP_659354.1
ProteinModelPortal:Q5BCI0 STRING:Q5BCI0 PRIDE:Q5BCI0
EnsemblFungi:CADANIAT00008396 GeneID:2875695 KEGG:ani:AN1750.2
OMA:VEEGYFA OrthoDB:EOG44J5S7 Uniprot:Q5BCI0
Length = 770
Score = 252 (93.8 bits), Expect = 2.8e-29, Sum P(3) = 2.8e-29
Identities = 73/189 (38%), Positives = 99/189 (52%)
Query: 31 LGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLL-HRLF 89
LGL + +L+K PT +Q++ IP IL+G DV+ +A TGSGKT A+ LP+L H L
Sbjct: 202 LGLSPETLTSLSKLKFSTPTSVQKSCIPPILDGHDVIGKASTGSGKTLAFGLPILEHYLE 261
Query: 90 NE------SSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPA 143
E S + + P AL+L PTREL Q+ + LI G V + LT +
Sbjct: 262 RERRKTIDSEEEKEKIPIALILSPTRELAHQLQKHIYGLISNAPG-VNARTALLTGGLSV 320
Query: 144 SDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGY----E 199
+ L DIVI TPG + + L TG + +K LV+DEAD LLS G+ E
Sbjct: 321 QKQQRLLE-TADIVIGTPGRVWEVLRTGQGLIRRMQ-GIKFLVIDEADRLLSEGHFKEVE 378
Query: 200 DDLKALSAV 208
D L +L V
Sbjct: 379 DILSSLDRV 387
Score = 121 (47.7 bits), Expect = 2.8e-29, Sum P(3) = 2.8e-29
Identities = 24/48 (50%), Positives = 32/48 (66%)
Query: 378 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEM 425
RG+D K + VI++ P+ A YVHR GRT RA +G SV + SP+EM
Sbjct: 564 RGLDIKGIDFVIHYHAPRTADTYVHRSGRTARAGASGKSVIICSPEEM 611
Score = 74 (31.1 bits), Expect = 2.8e-29, Sum P(3) = 2.8e-29
Identities = 17/60 (28%), Positives = 33/60 (55%)
Query: 285 KALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFD---YLIATD 341
+ L+FTN+I R+ L+ + + L++ + Q +RL +E F++ + L+ATD
Sbjct: 501 RTLVFTNSISAVRRITQLLQTLQLPALALHSSMAQKARLRSVERFSSSTANPGTILVATD 560
>UNIPROTKB|E1C2R8 [details] [associations]
symbol:DDX17 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0009791 "post-embryonic
development" evidence=IEA] [GO:0072358 "cardiovascular system
development" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00660000095174
OMA:QQFPQPP EMBL:AADN02006148 EMBL:AADN02006147 IPI:IPI00594176
Ensembl:ENSGALT00000020002 Uniprot:E1C2R8
Length = 496
Score = 272 (100.8 bits), Expect = 2.8e-29, Sum P(2) = 2.8e-29
Identities = 96/307 (31%), Positives = 140/307 (45%)
Query: 37 LVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKS 96
++ AL + +PT IQ PL L G+D+V A+TGSGKT AYLLP + + ++ +
Sbjct: 101 VMDALMDQNFTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAIVHINHQPYLER 160
Query: 97 KLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDI 156
P LVL PTREL QQV +V C +LK + P L +I
Sbjct: 161 GDGPICLVLAPTRELAQQV-QQVADDYGKCS---RLKSTCIYGGAPKGPQIRDLERGVEI 216
Query: 157 VIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCL 216
IATPG + L G K+ LVLDEAD +L G+E ++ + I Q L
Sbjct: 217 CIATPGRLIDFLEAG----KTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTL 272
Query: 217 LMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKXXXXXXX 276
+ SAT +V +L + L + Y+ VG+++ N+ Q C E +K
Sbjct: 273 MWSATWPKEVRQLAEDFLQD-YVQI--NVGNLELSA-NHNILQIVDVCMESEKDHKLIQL 328
Query: 277 XXXXXVQK--KALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLF 334
+K K +IF T L + + G + ++ + Q R +L EF +G
Sbjct: 329 MEEIMAEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKA 388
Query: 335 DYLIATD 341
LIATD
Sbjct: 389 PILIATD 395
Score = 122 (48.0 bits), Expect = 2.8e-29, Sum P(2) = 2.8e-29
Identities = 24/67 (35%), Positives = 41/67 (61%)
Query: 378 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGD 437
RG+D ++V VIN++ P ++ YVHRIGRT R+ N G + + +P +K E+ + +
Sbjct: 399 RGLDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLKQARELIKVL-E 457
Query: 438 DENEDSN 444
+ N+ N
Sbjct: 458 EANQAIN 464
>UNIPROTKB|E1BXX5 [details] [associations]
symbol:DDX59 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005622 "intracellular"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GO:GO:0005622 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR007529 Pfam:PF04438 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00610000086076
CTD:83479 OMA:VTRPIID EMBL:AADN02033796 IPI:IPI00587299
RefSeq:XP_422189.2 ProteinModelPortal:E1BXX5
Ensembl:ENSGALT00000003389 GeneID:424346 KEGG:gga:424346
NextBio:20826688 Uniprot:E1BXX5
Length = 625
Score = 270 (100.1 bits), Expect = 3.5e-29, Sum P(2) = 3.5e-29
Identities = 71/204 (34%), Positives = 107/204 (52%)
Query: 41 LNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAP 100
L G + PT IQ IP+ L G+D+VA A TGSGKT A+LLP++ ++ NE+ P
Sbjct: 224 LKNSGYEVPTPIQMQMIPVGLLGRDIVASADTGSGKTAAFLLPVIMKVLNETE-----TP 278
Query: 101 AALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIAT 160
+AL+L PTREL Q+ + EL G ++ V L +P L ++IAT
Sbjct: 279 SALILAPTRELAIQIERQAK---ELMAGLPNMRTVLLVGGLPLPPQLHRLKQSVKVIIAT 335
Query: 161 PGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSA 220
PG + + L QS +KI+V+DE D +L G++ + + I Q +L+SA
Sbjct: 336 PGRLLEILR----QSSVQLHGIKIVVVDEVDTMLKMGFQQQVLDILEDISHDHQTILVSA 391
Query: 221 TSSSDVDKLKKLILHNPYILTLPE 244
T ++ L +LHN +T+ E
Sbjct: 392 TIPVGIEHLANQLLHNFVRITIGE 415
Score = 129 (50.5 bits), Expect = 3.5e-29, Sum P(2) = 3.5e-29
Identities = 33/122 (27%), Positives = 63/122 (51%)
Query: 375 GVV-RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKS 433
GV+ RG+D NV V+NF+MP + YVH++GR GR ++G +++ ++ + K+F ++
Sbjct: 509 GVLGRGLDLVNVKLVVNFDMPSSMDEYVHQVGRAGRLGHSGTAITFINNNSKKLFWDVVK 568
Query: 434 FVGDDENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDL--RNEILNS 491
V + + I P LL + + R + K + V D+ +++ NS
Sbjct: 569 RV-----KPTGTILPPQLLNSPYLHDQKRREQQRLKQLENSLVTGDNIMDIIRKHDKNNS 623
Query: 492 EK 493
++
Sbjct: 624 QR 625
WARNING: HSPs involving 618 database sequences were not reported due to the
limiting value of parameter B = 250.
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.316 0.133 0.373 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 605 557 0.00098 119 3 11 22 0.42 34
35 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 868
No. of states in DFA: 607 (65 KB)
Total size of DFA: 267 KB (2142 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 48.94u 0.09s 49.03t Elapsed: 00:00:03
Total cpu time: 49.00u 0.09s 49.09t Elapsed: 00:00:03
Start: Tue May 21 02:19:42 2013 End: Tue May 21 02:19:45 2013
WARNINGS ISSUED: 2